BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003769
(796 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P42730|CLPB1_ARATH Chaperone protein ClpB1 OS=Arabidopsis thaliana GN=CLPB1 PE=1 SV=2
Length = 911
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 141/312 (45%), Gaps = 60/312 (19%)
Query: 9 PQALTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQW 68
P+ T + + A LA GHAQ TPLH+A A+++ PTG+ +A + +
Sbjct: 3 PEKFTHKTNETIATAHELAVNAGHAQFTPLHLAGALISDPTGIFPQAISSAGGEN---AA 59
Query: 69 KALELCFNVALNRLPASTITSPLLGPHRHSPRPS---LSNALVAAFKRAQAHQR-RGSIE 124
++ E N AL +LP+ SP P S++L+ +RAQA Q+ RG
Sbjct: 60 QSAERVINQALKKLPS------------QSPPPDDIPASSSLIKVIRRAQAAQKSRGDTH 107
Query: 125 NQQQQQQQPVLALKIEVEQLVISILDDPSVSRVMREAGFSSSQVKIKVE-----ENVPLG 179
+ V+QL++ +L+D + ++ E G ++++VK +VE E +
Sbjct: 108 --------------LAVDQLIMGLLEDSQIRDLLNEVGVATARVKSEVEKLRGKEGKKVE 153
Query: 180 ICSQSTN----KSLGRDSDDVMSVLNALINK---------------KRNTVIVGGNLAAI 220
S TN K+ GRD + L+ +I + K N V++G
Sbjct: 154 SASGDTNFQALKTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGK 213
Query: 221 EGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGR 278
V+ G+ + +G VP L + ISL + + +K GE E++L + V+ G+
Sbjct: 214 TAVVEGLAQRIVKGDVPNSLTDVRLISLDMGALVAGAKYRGEFEERLKSVLKEVEDAEGK 273
Query: 279 GIVLYLGDLKWV 290
++L++ ++ V
Sbjct: 274 -VILFIDEIHLV 284
>sp|Q6F2Y7|CLPB1_ORYSJ Chaperone protein ClpB1 OS=Oryza sativa subsp. japonica GN=CLPB1
PE=2 SV=1
Length = 912
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 139/299 (46%), Gaps = 66/299 (22%)
Query: 26 LAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKALELCFNVALNRLPAS 85
+A GHAQ+TPLH+ A+ A G+LR+A + S + E + AL +LP+
Sbjct: 20 IASEAGHAQLTPLHLVAALAADKGGILRQAISQASGGDAG-APDSFERVVSGALKKLPS- 77
Query: 86 TITSPLLGPHRHSPRPS---LSNALVAAFKRAQ-AHQRRGSIENQQQQQQQPVLALKIEV 141
SP P S AL+ +RAQ A ++RG + V
Sbjct: 78 -----------QSPPPDSVPASTALIKVIRRAQSAQKKRGDSH--------------LAV 112
Query: 142 EQLVISILDDPSVSRVMREAGFSSSQVKIKVE-----ENVPLGICSQSTN----KSLGRD 192
+QL++ +L+D +S ++EAG S+++V+ ++E E + S TN K+ GRD
Sbjct: 113 DQLLLGLLEDSLISDCLKEAGVSAARVRAELEKLRGGEGRKVESASGDTNFQALKTYGRD 172
Query: 193 SDDVMSVLNALINK---------------KRNTVIVG----GNLAAIEGVIRGIIDQFER 233
+ L+ +I + K N V++G G A +EG+ + I+ R
Sbjct: 173 LVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIV----R 228
Query: 234 GQVPGDLRYAQFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGDLKWV 290
G VP +L + I+L + + +K GE E++L + V+ G+ ++L++ ++ V
Sbjct: 229 GDVPSNLLDVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGK-VILFIDEIHLV 286
>sp|Q7WSY8|CLPB_PROFC Chaperone protein ClpB OS=Propionibacterium freudenreichii subsp.
shermanii (strain ATCC 9614 / CIP 103027 / CIRM-BIA1)
GN=clpB PE=2 SV=2
Length = 866
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 130/303 (42%), Gaps = 44/303 (14%)
Query: 10 QALTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTG----LLRRACTHHSHSHHP 65
+ LT + V AV LA +G+ P+H+ AML P LL+ +
Sbjct: 4 EKLTTMSRDAVTAAVRLALTKGNPTAEPVHLLHAMLMVPESSVAPLLKAVGADAAR---- 59
Query: 66 LQWKALELCFNVALNRLPASTITSPLLGPHRHSPRPSLSNALVAAFKRAQAHQRRGSIEN 125
++ + A+++LP+S+ +S +P LS AL A A R + +
Sbjct: 60 -----VDGAASAAIDKLPSSSGSS--------VAQPQLSGALARVL--ADAETRADKLGD 104
Query: 126 QQQQQQQPVLALKIEVEQLVISILDDPSVSRVMREAGFSSSQVKIKVE-----------E 174
Q + ++AL EV+ +IL V+ E F+ S+ ++ +
Sbjct: 105 QFVSTEHLLIALA-EVDSDAKNILASNGVTTAALEKAFNDSRGDKRITSAESEGGESALD 163
Query: 175 NVPLGICSQSTNKSL----GRDSDDVMSVLNALINK-KRNTVIVGGNLAAIEGVIRGIID 229
+ + ++ + L GRDS+ + V L + K N V++G V+ G+
Sbjct: 164 KYSIDLTQRAKDGKLDPVIGRDSE-IRRVAQVLSRRTKNNPVLIGEAGVGKTAVVEGLAQ 222
Query: 230 QFERGQVPGDLRYAQFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGDL 287
+ +G VP L+ + +SL L S +K GE E++L + +KS G+ I+ ++ +L
Sbjct: 223 RIVKGDVPDSLKGRRLVSLDLASMVAGAKYRGEFEERLKAVLNEIKSAEGQ-IITFIDEL 281
Query: 288 KWV 290
V
Sbjct: 282 HTV 284
>sp|F4JVJ1|CLPB2_ARATH Putative chaperone protein ClpB2, chloroplastic OS=Arabidopsis
thaliana GN=CLPB2 PE=2 SV=1
Length = 623
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 20/167 (11%)
Query: 138 KIEVEQLVISILDDPSVSRVMREAGFSSSQVKIKVEENVPLGICSQSTNKSLGRDSDDVM 197
K+ V LVIS+L+D +S V++EAG +VK +VE+ G K+ G D +
Sbjct: 83 KVGVAVLVISLLEDSQISDVLKEAGVVPEKVKSEVEK--LRGEVILRALKTYGTDLVEQA 140
Query: 198 SVLNALINKKR---------------NTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRY 242
L+ +I + R N V++G V+ G+ + +G VP +L
Sbjct: 141 GKLDPVIGRHREIRRVIEVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRILKGDVPINLTG 200
Query: 243 AQFISLPLFSFRNQS--KGEVEQKLVELSCHVKSYMGRGIVLYLGDL 287
+ ISL + + +G+ E++L + V+ G+ +VL++ ++
Sbjct: 201 VKLISLEFGAMVAGTTLRGQFEERLKSVLKAVEEAQGK-VVLFIDEI 246
>sp|Q7MVE7|CLPB_PORGI Chaperone protein ClpB OS=Porphyromonas gingivalis (strain ATCC
BAA-308 / W83) GN=clpB PE=3 SV=1
Length = 863
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/313 (22%), Positives = 130/313 (41%), Gaps = 79/313 (25%)
Query: 13 TVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKALE 72
T+++ ++QAV L +R G + P H+ A++ Q ++L
Sbjct: 7 TIKSQEALQQAVELTRRHGQQAIEPQHLLKAVMD--------------------QGESLT 46
Query: 73 --LCFNVALNRLPASTITSPLLG--PHRHSPRPSLSNALVAAFKRAQ--AHQRRGSIENQ 126
L + LN+ +T L+ PH P LS+ + A+ AH+ +
Sbjct: 47 DFLFAKMGLNKGSIATAVDKLIEKLPHVSGGEPYLSHETNQVLQAAEDAAHRMKDKY--- 103
Query: 127 QQQQQQPVLALKIEVEQLVISILDDP-SVSRVMREAGFSSSQVKIKVEE-----NV---- 176
+ +E +V++IL S ++++AG + ++ +EE NV
Sbjct: 104 ------------VSLEHIVLAILTTRCEASTLLKDAGATEQLLQSAIEELRKGRNVTSQS 151
Query: 177 -----------PLGICSQSTNKSL----GRDSDDVMSVLNALINK-KRNTVIVG----GN 216
+ +C ++ + L GRD D++ VL L + K N +++G G
Sbjct: 152 AEEQYNALEKYAVNLCQRARDGKLDPVIGRD-DEIRRVLQILSRRTKNNPILIGEPGVGK 210
Query: 217 LAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSF--RNQSKGEVEQKLVELSCHVKS 274
A EG+ I+ RG VP +LR Q SL + + + KGE E++L + V
Sbjct: 211 TAIAEGLAYRIV----RGDVPENLRNKQIFSLDMGALIAGAKYKGEFEERLKAVVNEVTG 266
Query: 275 YMGRGIVLYLGDL 287
G I+L++ ++
Sbjct: 267 AEGE-IILFIDEI 278
>sp|Q89YY3|CLPB_BACTN Chaperone protein ClpB OS=Bacteroides thetaiotaomicron (strain ATCC
29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=clpB
PE=3 SV=1
Length = 862
Score = 42.4 bits (98), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 61/308 (19%), Positives = 124/308 (40%), Gaps = 67/308 (21%)
Query: 12 LTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKAL 71
T+++ V++AVNL + RG + P H+ ++ T+ + + +
Sbjct: 6 FTIKSQEAVQEAVNLVQSRGQQAIEPAHILHGVMKVGEN-----VTNFIFQKLGMNGQQV 60
Query: 72 ELCFNVALNRLPASTITSPLLGPHRHSPRPSLSNALVAAFKRAQAHQRRGSIENQQQQQQ 131
L + + LP + P LS ++A + + E
Sbjct: 61 ALVVDKQIESLPKVS-----------GGEPYLSRESNEVLQKATQYSKEMGDEF------ 103
Query: 132 QPVLALKIEVEQLVISILDDPS-VSRVMREAGFSSSQVKIKVEE---------------- 174
+ +E +++++L S VS ++++AG + +++ + E
Sbjct: 104 -------VSLEHILLALLTVKSTVSTILKDAGMTEKELRNAINELRKGEKVTSQSSEDNY 156
Query: 175 --------NVPLGICSQSTNKSLGRDSDDVMSVLNALINK-KRNTVIVG----GNLAAIE 221
N+ S + +GRD +++ VL L + K N +++G G A +E
Sbjct: 157 QSLEKYAINLNEAARSGKLDPVIGRD-EEIRRVLQILSRRTKNNPILIGEPGTGKTAIVE 215
Query: 222 GVIRGIIDQFERGQVPGDLRYAQFISLPLFSF--RNQSKGEVEQKLVELSCHVKSYMGRG 279
G+ I+ RG VP +L+ Q SL + + + KGE E++L + VK G
Sbjct: 216 GLAHRIL----RGDVPENLKNKQVYSLDMGALVAGAKYKGEFEERLKSVVNEVKKSEG-D 270
Query: 280 IVLYLGDL 287
I+L++ ++
Sbjct: 271 IILFIDEI 278
>sp|O83110|CLPB_TREPA Chaperone protein ClpB OS=Treponema pallidum (strain Nichols)
GN=clpB PE=3 SV=1
Length = 878
Score = 42.4 bits (98), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 129/309 (41%), Gaps = 69/309 (22%)
Query: 13 TVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKALE 72
TV+A+ + A++LA+ H QV H+ A+L+ G++ + + L
Sbjct: 7 TVKASEALNDAISLAEAENHGQVEEEHLLHALLSQKDGIIS-PLIEKIGAKPDFLYDELL 65
Query: 73 LCFNVALNRLPASTITSPLLGPHRHSP-RPSLSNALVAAFKRAQAHQRRGSIENQQQQQQ 131
C L R P T GP + P+LS A A R +++NQ +
Sbjct: 66 QC----LRRKPRVT------GPAAQTRCAPTLSKAC--------ARAERLALKNQDEY-- 105
Query: 132 QPVLALKIEVEQLVISILD-DPSVSRVMREAGFSSSQVKIKVEE---------------- 174
+ E L+++I + D + +R++ G +S + +++
Sbjct: 106 -------VSCEHLLLAISETDSNTARLLHSQGITSKTISAALKDIRGSKRVTSQDPESTF 158
Query: 175 --------NVPLGICSQSTNKSLGRDSD--DVMSVLNALINKKRNTVIVG----GNLAAI 220
++ + + +GRD + VM VL+ K N V++G G A +
Sbjct: 159 QCLEKYCRDLTTLAREEKIDPVIGRDEEIRRVMQVLSR--RTKNNPVLIGEPGVGKTAIV 216
Query: 221 EGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGR 278
EG+ R I+ G VP L+ + +SL L + +K GE E++L + V+ G
Sbjct: 217 EGLARRIVS----GDVPESLKGKRLLSLDLGALVAGAKFRGEFEERLKAVIEAVQKSDG- 271
Query: 279 GIVLYLGDL 287
G++L++ +L
Sbjct: 272 GVILFIDEL 280
>sp|Q8G4X4|CLPB_BIFLO Chaperone protein ClpB OS=Bifidobacterium longum (strain NCC 2705)
GN=clpB PE=3 SV=1
Length = 889
Score = 41.2 bits (95), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 76/314 (24%), Positives = 132/314 (42%), Gaps = 65/314 (20%)
Query: 10 QALTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWK 69
Q T A V A+ A G+AQV LHV A+L G+ R + P +
Sbjct: 3 QKFTTMAQEAVGDAIQSASAAGNAQVETLHVMDALLRQENGVARSLI--EAAGGDP---Q 57
Query: 70 ALELCFNVALNRLPASTITSPLLGPHRHSPRPSLSNALVAAFKRAQAHQRRGSIENQQQQ 129
A+ AL LP+++ +S + +P S L AA +A E + QQ
Sbjct: 58 AIGAAVRNALVALPSASGSS--------TSQPQASRQLTAAIAQA---------EKEMQQ 100
Query: 130 QQQPVLALKIEVEQLVISIL-DDPSVS-RVMREAGFSSSQVKIKVEENVPLGIC-----S 182
+ E L+I I P+ S ++ + G +++ ++ K V G +
Sbjct: 101 MGDEY----VSTEHLLIGIAASKPNQSAEILEKNGVTAASLR-KAVPGVRGGAKVTSPDA 155
Query: 183 QSTNKSLGRDSDDVMSV-----LNALINK---------------KRNTVIVG----GNLA 218
+ + K+L + S D+ + L+ +I + K N V++G G A
Sbjct: 156 EGSYKALEKYSTDLTAAAKEGKLDPVIGRDQEIRRVIQILSRRTKNNPVLIGEPGVGKTA 215
Query: 219 AIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYM 276
+EG+ + I+ G VP L+ + ISL L S SK GE E++L + +K+
Sbjct: 216 VVEGLAQRIV----AGDVPTTLQGKKLISLDLGSMVAGSKYRGEFEERLKSVLNEIKNAD 271
Query: 277 GRGIVLYLGDLKWV 290
G+ I+ ++ ++ +
Sbjct: 272 GQ-IITFIDEIHTI 284
>sp|Q9CI09|CLPE_LACLA ATP-dependent Clp protease ATP-binding subunit ClpE OS=Lactococcus
lactis subsp. lactis (strain IL1403) GN=clpE PE=3 SV=1
Length = 748
Score = 41.2 bits (95), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 21/177 (11%)
Query: 566 ENLKVLSDALERKAVVPWQKEIMPEIARTILECR---SKKEQTWLLFLGADDHNHGKEKI 622
E ++++ A + KA V Q E + +IA+ I R K + FL GK ++
Sbjct: 431 EQTQLINLADDLKAHVIGQDEAVDKIAKAIRRSRVGLGKPNRPIGSFLFVGPTGVGKTEL 490
Query: 623 AREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVEL-----GCCSYIE--RLGLAL 675
A+++AK +FGS S S R D ++ +L G Y E +L +
Sbjct: 491 AKQLAKELFGS--------SESMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERV 542
Query: 676 NENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732
NP+ + +++++ D + Q +E+G + A G V KDS+II + ++
Sbjct: 543 RRNPYSLILLDEIEKAHPDVMHM---FLQILEDGRLTDAQGRTVSFKDSLIIMTSNA 596
>sp|Q9ZMH1|CLPB_HELPJ Chaperone protein ClpB OS=Helicobacter pylori (strain J99) GN=clpB
PE=3 SV=1
Length = 856
Score = 40.8 bits (94), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 132/298 (44%), Gaps = 43/298 (14%)
Query: 23 AVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKALELCFNVALNRL 82
A+ LA +A+VTP+H+ AML G+L +A P+ +AL+L LN+
Sbjct: 18 AIALALHHKNAEVTPMHMLFAMLNNSQGILIQAL-----QKMPVDIEALKLSVQSELNKF 72
Query: 83 PASTITSPLLGPHRHSPRPSLSNALVAAFKRAQA-HQRRG-----------SIENQQQQQ 130
+ S L+ AL+ + + AQ +RG + N +
Sbjct: 73 AKVSQIS--------KQNIQLNQALIQSLENAQGLMAKRGDSFIATDAYLLANMNLFESV 124
Query: 131 QQPVLALKIEVEQLVISILDDPSVSRVMREAGFSSSQVKIKVEENVPLGICSQSTNKSLG 190
+P L K E+++ + S+ ++ ++ S + K ++ + +G
Sbjct: 125 LKPYLDTK-ELQKTLESLRKGRTIQDKNDDSNLESLE---KFGIDLTQKALENKLDPVIG 180
Query: 191 RDSDDVMSVLNALINK-KRNTVIVG----GNLAAIEGVIRGIIDQFERGQVPGDLRYAQF 245
RD ++++ ++ LI K K N +++G G A +EG+ + I+++ +VP L +
Sbjct: 181 RD-EEIIRMMQILIRKTKNNPILLGEPGVGKTAVVEGLAQRIVNK----EVPKTLLNKRV 235
Query: 246 ISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGD 301
++L L +K GE E++L ++ VK ++L++ ++ + A+ G D
Sbjct: 236 VALDLSLLVAGAKYRGEFEERLKKVIEEVKK--SANVILFIDEIHTIVGAGASEGGMD 291
>sp|Q73K92|CLPB_TREDE Chaperone protein ClpB OS=Treponema denticola (strain ATCC 35405 /
CIP 103919 / DSM 14222) GN=clpB PE=3 SV=1
Length = 859
Score = 40.0 bits (92), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 15/107 (14%)
Query: 189 LGRDSD--DVMSVLNALINKKRNTVIVG----GNLAAIEGVIRGIIDQFERGQVPGDLRY 242
+GRD + VM VL+ K N V++G G A +EG+ R I+ G VP L+
Sbjct: 181 IGRDEEIRRVMQVLSR--RTKNNPVLIGEPGVGKTAIVEGLARRIVS----GDVPDSLKG 234
Query: 243 AQFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGDL 287
+ +SL L + +K GE E++L + V+ GR ++L++ +L
Sbjct: 235 KRLLSLDLGALVAGAKFRGEFEERLKAVISEVQKSEGR-VILFIDEL 280
>sp|Q826F2|CLPB2_STRAW Chaperone protein ClpB 2 OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=clpB2 PE=3 SV=1
Length = 879
Score = 39.7 bits (91), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 13/109 (11%)
Query: 189 LGRDSDDVMSVLNALINK-KRNTVIVG----GNLAAIEGVIRGIIDQFERGQVPGDLRYA 243
+GRD++ + V L K K N V++G G A +EG+ + I+ RG VP LR
Sbjct: 186 IGRDAE-IRRVTQILSRKTKNNPVLIGDPGVGKTAIVEGLAQRIV----RGDVPEGLRDK 240
Query: 244 QFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGDLKWV 290
+L + S +K GE E++L + VK+ GR I+L++ +L V
Sbjct: 241 TVFALDMGSLVAGAKYRGEFEERLKAVLSEVKAAEGR-ILLFVDELHTV 288
>sp|Q9S5Z2|CLPE_LACLM ATP-dependent Clp protease ATP-binding subunit ClpE OS=Lactococcus
lactis subsp. cremoris (strain MG1363) GN=clpE PE=1 SV=2
Length = 748
Score = 39.7 bits (91), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 21/177 (11%)
Query: 566 ENLKVLSDALERKAVVPWQKEIMPEIARTILECR---SKKEQTWLLFLGADDHNHGKEKI 622
E ++++ A + KA V Q E + +I++ I R K + FL GK ++
Sbjct: 431 EQTQLINLADDLKAHVIGQDEAVDKISKAIRRSRVGLGKPNRPIGSFLFVGPTGVGKTEL 490
Query: 623 AREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVEL-----GCCSYIE--RLGLAL 675
A+++AK +FGS S S R D ++ +L G Y E +L +
Sbjct: 491 AKQLAKELFGS--------SESMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERV 542
Query: 676 NENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732
NP+ + +++++ D + Q +E+G + A G V KDS+II + ++
Sbjct: 543 RRNPYSLILLDEIEKAHPDVMHM---FLQILEDGRLTDAQGRTVSFKDSLIIMTSNA 596
>sp|Q9PGC1|CLPB_XYLFA Chaperone protein ClpB OS=Xylella fastidiosa (strain 9a5c) GN=clpB
PE=3 SV=1
Length = 861
Score = 39.7 bits (91), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 127/308 (41%), Gaps = 65/308 (21%)
Query: 12 LTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKAL 71
LT + + A +LA R H + P+HV +A+L G S PL +A
Sbjct: 6 LTSRFQNALADAQSLAVGRDHTIIEPVHVFSALLDQQGG-----------STRPLLMQA- 53
Query: 72 ELCFNVALNRLPASTITSPLLGPHRHSPRPSLSNALVAAFKRAQAHQRRGSIENQQQQQQ 131
NV L R + I L + S SN L F R + QQ
Sbjct: 54 --GVNVPLLRERLTEILEALPKVSGQTVNVSPSNELSRLFHRT---------DKLAQQHG 102
Query: 132 QPVLALKIEVEQLVISILDDPS-VSRVMREAGFSSSQVKIKVE----------------- 173
+A E V++++DD + + +R AG +++ ++
Sbjct: 103 DQFMA----SEWFVLAVVDDSGGLGQALRAAGAEKKKIEAAIDKLRGGETVQTENAEEQR 158
Query: 174 ---ENVPLGICSQSTNKSL----GRDSDDVMSVLNALINK-KRNTVIVG----GNLAAIE 221
E + + +++ + L GRD +++ + L + K N V++G G A +E
Sbjct: 159 QALEKYTIDLTARAESGKLDPVIGRD-EEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVE 217
Query: 222 GVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRG 279
G+ + I++ G+VP LR + +SL L + +K GE E++L + + GR
Sbjct: 218 GLAQRIVN----GEVPEGLRSKRLLSLDLGALIAGAKFRGEFEERLKGVLNDLAKNEGR- 272
Query: 280 IVLYLGDL 287
++L++ +L
Sbjct: 273 VILFIDEL 280
>sp|P31543|CLP_TRYBB Heat shock protein 100 OS=Trypanosoma brucei brucei GN=HSP100 PE=3
SV=1
Length = 868
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 72/320 (22%), Positives = 118/320 (36%), Gaps = 77/320 (24%)
Query: 16 AASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKALELCF 75
A + + AV A++ + V P H+A + GL R
Sbjct: 12 AQTALSDAVESARKHNNGFVDPAHLALVLFKNEDGLASRV-------------------- 51
Query: 76 NVALNRLPASTITSPL------LGPHRHSPRPSL--SNALVAAFKRAQAHQRRGSIENQQ 127
L +L A T+ PL L R PR S+ A +RA+A++ S+
Sbjct: 52 ---LRKLNAGTVLEPLAARVGALPEQRPRPRSITFSSDGGCAQHRRAEANRVGDSL---- 104
Query: 128 QQQQQPVLALKIEVEQLVISILDDPSVSRVMREAGFSSSQV-----------KIKVE--- 173
I V+ L+I + + V +M+ A S V K+ E
Sbjct: 105 -----------IAVDHLLIGLFECKEVEAIMKAAHASKKAVEGALLELRKGKKVTSEFQE 153
Query: 174 ------ENVPLGICSQSTNKSL----GRDSDDVMSVLNALINK-KRNTVIVGGNLAAIEG 222
E +C + L GR +D+V+ + L + K N +++G
Sbjct: 154 ENYQALEKYATDLCKLAEEGKLDPVIGR-TDEVLRTIRVLSRRTKNNPILIGEPGVGKTA 212
Query: 223 VIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQS--KGEVEQKLVELSCHVKSYMGRGI 280
+ GI + RG VP L + SL L + S +GE E++L + VK G+
Sbjct: 213 IAEGIAQRIVRGDVPDTLLNTRLFSLDLGALIAGSSLRGEFEERLKSVLNEVKES-SNGV 271
Query: 281 VLYLGDLKWVAEFWANYYGG 300
+L++ ++ V A GG
Sbjct: 272 ILFIDEIHLV--LGAGKSGG 289
>sp|Q7VBL0|CLPB_PROMA Chaperone protein ClpB OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=clpB PE=3 SV=1
Length = 864
Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 15/119 (12%)
Query: 189 LGRDSDDVMSVLNALINK-KRNTVIVG----GNLAAIEGVIRGIIDQFERGQVPGDLRYA 243
+GRD D++ + L + K N V++G G A +EG+ + II+ G VP L+
Sbjct: 182 IGRD-DEIRRTIQILSRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN----GDVPSALQNR 236
Query: 244 QFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGG 300
Q I+L + + +K GE E++L + V S G+ IVL++ ++ V A GG
Sbjct: 237 QLIALDMGALIAGAKYRGEFEERLKAVLKEVTSSQGQ-IVLFIDEIHTVV--GAGATGG 292
>sp|Q72AW6|CLPB_DESVH Chaperone protein ClpB OS=Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB 8303) GN=clpB PE=3
SV=1
Length = 865
Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 65/300 (21%), Positives = 119/300 (39%), Gaps = 58/300 (19%)
Query: 22 QAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKALELCFNVALNR 81
+A N+A R GH +V H+A A++ GL+ R + +A L +
Sbjct: 16 EAQNIAVRFGHQEVDAEHLADALVRQEQGLVPRLLDRMGQ-----KPEAFAEALERELGK 70
Query: 82 LPASTITSPLLGPHRHSPRPSLSNALVAAFKRAQAHQRRGSIENQQQQQQQPVLALKIEV 141
PA + GP + +S L A +AQ R+ E + V
Sbjct: 71 RPAVS------GPGAAPGQIFVSKRLNAVLVKAQDFARQLKDEY-------------VSV 111
Query: 142 EQLVISILDDPS---VSRVMREAGFSSSQVKIKVEENVPLGICSQSTNKS---------- 188
E + +L++P+ + R+ RE S +V + V E+V S N
Sbjct: 112 EHIFCVLLEEPASTIMGRIAREFSLSREKV-LGVLEDVRGSQRVTSANPEDTYEALQKYG 170
Query: 189 ---------------LGRDSDDVMSVLNALINK-KRNTVIVGGNLAAIEGVIRGIIDQFE 232
+GRD+ ++ V+ L + K N V++G ++ G+ +
Sbjct: 171 RDLVEEARKGKLDPVIGRDA-EIRRVIRILSRRTKNNPVLIGEAGVGKTAIVEGLAHRIL 229
Query: 233 RGQVPGDLRYAQFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGDLKWV 290
+G VP L+ +L + + +K GE E++L + V+ GR I++++ +L +
Sbjct: 230 KGDVPEGLKERGLFALDMGALIAGAKYRGEFEERLKAVLKEVEKSEGR-IIMFIDELHTI 288
>sp|Q7NAZ3|CLPB_MYCGA Chaperone protein ClpB OS=Mycoplasma gallisepticum (strain R(low /
passage 15 / clone 2)) GN=clpB PE=3 SV=1
Length = 717
Score = 38.5 bits (88), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 64/124 (51%), Gaps = 13/124 (10%)
Query: 180 ICSQSTNKSLGRDSDDVMSVLNALINK-KRNTVIVG----GNLAAIEGVIRGIIDQFERG 234
I + + ++GR+ +++ ++ L K K N V++G G A +EG R I++ G
Sbjct: 25 IARNAIDPTIGRE-EEIRRLIEILSRKNKNNPVLIGEPGVGKTAIVEGFARKIVN----G 79
Query: 235 QVPGDLRYAQFISLPLFSF--RNQSKGEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAE 292
VP +L+ + + L L S Q +G E++L ++ VK+ G+ ++L++ ++ +
Sbjct: 80 DVPDNLKDVEVVELSLSSLIAGTQFQGSFEERLNKILKEVKNSSGK-VILFIDEIHQLVG 138
Query: 293 FWAN 296
N
Sbjct: 139 MGKN 142
>sp|Q74FF1|CLPB_GEOSL Chaperone protein ClpB OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=clpB PE=3 SV=1
Length = 865
Score = 38.5 bits (88), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 128/298 (42%), Gaps = 38/298 (12%)
Query: 9 PQALTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQW 68
P+ +T++ + A LA R+G+ + P H+ ++L GL+ A P
Sbjct: 4 PEKMTIKTQEALAGAQQLAARQGNGSIEPEHLLVSLLEQEGGLI--APIIQKVGGAP--- 58
Query: 69 KALELCFNVALNRLP---ASTITSPLLGPHRHSPRPSLSNALVAAFKRAQA--------- 116
AL +V + RLP +T + L P+L+ L AA + A
Sbjct: 59 AALRSAADVLVKRLPQVSGATAQAYL--------SPALNRILDAAQREADTMKDEFVSTE 110
Query: 117 HQRRGSIENQQQQQQQPVLALKIEVEQLVISILDDPSVSRVMREAGFSSSQVKIKVEENV 176
H G ++Q + +L + + ++ ++++ RV + + Q K ++
Sbjct: 111 HLLLGFFADRQCAAARALLDAGVSRDNVLAALMEIRGGERVTDQNPEDTYQALAKYARDL 170
Query: 177 PLGICSQSTNKSLGRDSDDVMSVLNALINK-KRNTVIVG----GNLAAIEGVIRGIIDQF 231
+ +GRD D++ VL L + K N V++G G A +EG+ + I+
Sbjct: 171 TDLARQGKLDPVIGRD-DEIRRVLQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVS-- 227
Query: 232 ERGQVPGDLRYAQFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGDL 287
G VP L+ + ++L + + +K GE E++L + V G+ ++L++ +L
Sbjct: 228 --GDVPETLKDKRLVALDMGALIAGAKYRGEFEERLKAVIREVAKSEGK-VILFIDEL 282
>sp|Q8KA87|CLPB2_CHLTE Probable chaperone protein ClpB 2 OS=Chlorobium tepidum (strain
ATCC 49652 / DSM 12025 / TLS) GN=clpB2 PE=3 SV=1
Length = 442
Score = 38.1 bits (87), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 123/301 (40%), Gaps = 44/301 (14%)
Query: 9 PQALTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQW 68
P TV+A ++ A LA + + Q+ P H+ + ML + AC P+
Sbjct: 5 PNKFTVKAQEALQAASMLASSKQNQQIEPEHLLSVMLGDHDNI---ACQIARKLETPVDT 61
Query: 69 KALELCFNVALNRLPASTITSPLLGPHRHSPRPSLSNALVAAFKRAQAHQRRGSIENQQQ 128
L + ++R+P T S G + S L A K A+ ++++
Sbjct: 62 --LLSVVDREIDRIPKVTGASAT-GQYISS---DLGKVFDTALKEAE------QLKDEYI 109
Query: 129 QQQQPVLALKIEVEQLVISILDDPSVSR---------------VMREAGFSSSQVKIKVE 173
+ +A+ E V +L D + R V + S Q K
Sbjct: 110 SSEHLFIAMS-EAGVKVSKLLKDAGIDRNAILKVLTSFRGSQRVTSQNAEESYQSLKKYS 168
Query: 174 ENVPLGICSQSTNKSLGRDSDDVMSVLNALINK-KRNTVIVG----GNLAAIEGVIRGII 228
N+ + + +GRD D++ VL L + K N V++G G A +EG+ + I+
Sbjct: 169 RNLNDLVIKGKLDPVIGRD-DEIRRVLQILSRRTKNNPVLIGEPGVGKTAIVEGIAQRIV 227
Query: 229 DQFERGQVPGDLRYAQFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGD 286
G VP +L+ Q +L + + +K GE E++L L V++ G ++L++ +
Sbjct: 228 G----GDVPENLKSKQIAALDIAALVAGTKFRGEFEERLKALVKEVQASDGE-VILFIDE 282
Query: 287 L 287
L
Sbjct: 283 L 283
>sp|Q8YUL9|CLPB1_NOSS1 Chaperone protein ClpB 1 OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=clpB1 PE=3 SV=1
Length = 880
Score = 37.7 bits (86), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 85/195 (43%), Gaps = 40/195 (20%)
Query: 139 IEVEQLVISILDDPSVSRVMREAGFSSSQVKI-----------KVEENVP---------L 178
I VE ++++ +DD V R + + GF+ KI KV + P
Sbjct: 108 ISVEHMLLAFVDDERVGRKVLK-GFNVDSAKIEASIKAVRGSQKVTDQNPESRYEALQKF 166
Query: 179 G--ICSQSTNKSL----GRDSDDVMSVLNALINK-KRNTVIVG----GNLAAIEGVIRGI 227
G + Q+ + L GRD D++ V+ L + K N V++G G A E + + I
Sbjct: 167 GRDLTEQAKSGKLDPVIGRD-DEIRRVIQVLSRRSKNNPVLIGEPGVGKTAIAEALAQRI 225
Query: 228 IDQFERGQVPGDLRYAQFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLG 285
++ G VP L+ Q ISL + S +K GE E +L + V G IVL++
Sbjct: 226 VN----GDVPESLKNRQLISLDIGSLIAGAKYRGEFEDRLKAVLREVTESNG-NIVLFID 280
Query: 286 DLKWVAEFWANYYGG 300
+L V +N G
Sbjct: 281 ELHTVVGTGSNQQGA 295
>sp|Q88VX7|CLPB_LACPL Chaperone protein ClpB OS=Lactobacillus plantarum (strain ATCC
BAA-793 / NCIMB 8826 / WCFS1) GN=clpB PE=3 SV=1
Length = 867
Score = 37.7 bits (86), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 13/106 (12%)
Query: 189 LGRDSDDVMSVLNALINK-KRNTVIVG----GNLAAIEGVIRGIIDQFERGQVPGDLRYA 243
+GRD ++++ V+ L K K N V++G G A +EG+ + I+ RG VP +L+
Sbjct: 183 IGRD-EEILDVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIV----RGDVPENLKDK 237
Query: 244 QFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGDL 287
SL + S +K GE E++L + +K G+ I++++ ++
Sbjct: 238 TLFSLDMGSLIAGAKYRGEFEERLKAVLKEIKKSDGQ-IIMFIDEI 282
>sp|Q7V2A3|CLPB_PROMP Chaperone protein ClpB OS=Prochlorococcus marinus subsp. pastoris
(strain CCMP1986 / MED4) GN=clpB PE=3 SV=1
Length = 860
Score = 37.4 bits (85), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 15/119 (12%)
Query: 189 LGRDSDDVMSVLNALINK-KRNTVIVG----GNLAAIEGVIRGIIDQFERGQVPGDLRYA 243
+GRD +++ + L + K N V++G G A +EG+ + I++ G VP L
Sbjct: 179 IGRD-EEIRRTIQILSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN----GDVPSSLNNR 233
Query: 244 QFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGG 300
Q IS+ + S +K GE E+++ + VKS G+ I+L++ ++ V A GG
Sbjct: 234 QLISIDMGSLIAGAKYRGEFEERIKNVLKKVKSSEGK-IILFIDEIHTVV--GAGATGG 289
Score = 33.5 bits (75), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 6/125 (4%)
Query: 607 LLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCS 666
LFLG GK ++++ IAK +F S+S+ T L S+ + +K
Sbjct: 604 FLFLGP--TGVGKTELSKVIAKTIFDSNSS-ITRLDMSEYMEKHSVSKIIGAPPGYLGFE 660
Query: 667 YIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSII 726
+L A+ +NP+ + +++++ D L Q +++G I G + K+SII
Sbjct: 661 SGGQLTEAVRKNPYSLILLDEIEKAHKDVLDV---LLQVLDDGIITDGQGRTISFKNSII 717
Query: 727 IFSCD 731
+ + +
Sbjct: 718 VLTSN 722
>sp|P31540|HSP98_NEUCR Heat shock protein hsp98 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=hsp98
PE=1 SV=2
Length = 927
Score = 37.4 bits (85), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 70/333 (21%), Positives = 130/333 (39%), Gaps = 72/333 (21%)
Query: 12 LTVEAASIVKQAVNLAKRRGHAQVTPLHVATAML--------------ACPTGLLRRACT 57
T A ++ A+ LA++ H+Q+ P+H+A A+L A T L R
Sbjct: 7 FTDRAKKALEDAMALAEQYAHSQLLPVHLAVALLDPLPDPSKDQQNAPAGATSSLFRQVI 66
Query: 58 HHSHSHHPLQWKALELCFNVALNRLPASTITSPLLGPHRHSPRPSLSNALVAAFKRAQAH 117
+H L +AL+ AL RLP+ P P S PS L A
Sbjct: 67 ERAHGDPQLFDRALK----KALVRLPSQ--DPP---PDHVSMAPSFHTVLRKA------- 110
Query: 118 QRRGSIENQQQQQQQPVLALKIEVEQLVISILDDPSVSRVMREAGFSSSQVKIKV----- 172
N+ Q+ Q+ I V+ L+ ++ ++PS+ ++EA ++
Sbjct: 111 -------NELQKTQKDTY---IAVDHLITALAEEPSIMNALKEANIPKPKLVTDAIQAIR 160
Query: 173 ---------------EENVPLGICSQST-------NKSLGRDSDDVMSVLNALINK-KRN 209
EN+ + + +GR+ +++ V+ L + K N
Sbjct: 161 GTKRVDSRNADTEEEHENLAKFTIDMTAMAREGKIDPVIGRE-EEIRRVIRILSRRTKNN 219
Query: 210 TVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSK--GEVEQKLVE 267
V++G V+ G+ + VP +L + +SL + + SK GE E+++
Sbjct: 220 PVLIGEPGVGKTTVVEGLAQRIVNADVPDNLANCKLLSLDVGALVAGSKYRGEFEERMKG 279
Query: 268 LSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGG 300
+ + S I+L++ ++ + A+ GG
Sbjct: 280 VLKEI-SESKEMIILFIDEIHLLMGAGASGEGG 311
>sp|Q87AX8|CLPB_XYLFT Chaperone protein ClpB OS=Xylella fastidiosa (strain Temecula1 /
ATCC 700964) GN=clpB PE=3 SV=1
Length = 861
Score = 37.4 bits (85), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 126/308 (40%), Gaps = 65/308 (21%)
Query: 12 LTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKAL 71
LT + + A +LA R H + P+HV + +L G S PL +A
Sbjct: 6 LTSRFQNALADAQSLAVGRDHTIIEPVHVFSVLLDQQGG-----------STRPLLVQA- 53
Query: 72 ELCFNVALNRLPASTITSPLLGPHRHSPRPSLSNALVAAFKRAQAHQRRGSIENQQQQQQ 131
NV L R + I L + S SN L F R + QQ
Sbjct: 54 --GVNVPLLRERLTEILEALPKVSGQTVNVSPSNELSRLFHRT---------DKLAQQHG 102
Query: 132 QPVLALKIEVEQLVISILDDPS-VSRVMREAGFSSSQVKIKVE----------------- 173
+A E V++++DD + + +R AG +++ ++
Sbjct: 103 DQFMA----SEWFVLAVVDDSGGLGQALRAAGAEKKKIEAAIDKLRGGETVQTENAEEQR 158
Query: 174 ---ENVPLGICSQSTNKSL----GRDSDDVMSVLNALINK-KRNTVIVG----GNLAAIE 221
E + + +++ + L GRD +++ + L + K N V++G G A +E
Sbjct: 159 QALEKYTIDLTARAESGKLDPVIGRD-EEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVE 217
Query: 222 GVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRG 279
G+ + I++ G+VP LR + +SL L + +K GE E++L + + GR
Sbjct: 218 GLAQRIVN----GEVPEGLRSKRLLSLDLGALIAGAKFRGEFEERLKGVLNDLAKNEGR- 272
Query: 280 IVLYLGDL 287
++L++ +L
Sbjct: 273 VILFIDEL 280
>sp|Q7V8B1|CLPB_PROMM Chaperone protein ClpB OS=Prochlorococcus marinus (strain MIT 9313)
GN=clpB PE=3 SV=1
Length = 865
Score = 37.0 bits (84), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 87/194 (44%), Gaps = 40/194 (20%)
Query: 139 IEVEQLVISILDDPSVSR-VMREAGFSSSQVKI---------KVEENVPLGICSQ----- 183
I +E L++++ D R ++ +AG + ++K+ KV + P G
Sbjct: 107 ISIEHLLLALAGDNRCGRKLLNQAGVDAGKLKVAIDAVRGNQKVTDQNPEGTYESLEKYG 166
Query: 184 ----------STNKSLGRDSDDVMSVLNALINK-KRNTVIVG----GNLAAIEGVIRGII 228
+ +GRD D++ + L + K N V++G G A +EG+ + I+
Sbjct: 167 RDLSAAAREGKLDPVIGRD-DEIRRTIQILSRRTKNNPVLIGEPGVGKTAIVEGLAQRIV 225
Query: 229 DQFERGQVPGDLRYAQFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGD 286
+ G VP L+ Q I+L + + +K GE E++L + V + G+ IVL++ +
Sbjct: 226 N----GDVPAALQNRQLITLDMGALIAGAKYRGEFEERLKAVLKEVTASEGQ-IVLFIDE 280
Query: 287 LKWVAEFWANYYGG 300
+ V A GG
Sbjct: 281 IHTV--VGAGATGG 292
>sp|O94641|HS104_SCHPO Heat shock protein 104 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=hsp104 PE=3 SV=1
Length = 905
Score = 36.6 bits (83), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 112/289 (38%), Gaps = 67/289 (23%)
Query: 12 LTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACP----TGLLRRACTHHSHSHHPLQ 67
T +AA + A ++A+ GH+Q+TP+H+A A+L+ T LLR
Sbjct: 6 FTDKAAKTLSDAYSIAQSYGHSQLTPIHIAAALLSDSDSNGTTLLRTIVDKAGGD----- 60
Query: 68 WKALELCFNVALNRLPASTITSPLLGPHRHSPRPSLSNALVAAFKRAQAHQRRGSIENQQ 127
+ E L RLPA P P + + P + L R + E Q+
Sbjct: 61 GQKFERSVTSRLVRLPAQ--DPP---PEQVTLSPESAKLL------------RNAHELQK 103
Query: 128 QQQQQPVLALKIEVEQLVISILDDPSVSRVMREAGFSSSQVKIKVEENVPLGICSQSTNK 187
Q+ I + + D ++ ++ EAG + + V NV S N
Sbjct: 104 TQKDS-----YIAQDHFIAVFTKDDTLKSLLAEAGVTPKAFEFAV-NNVRGNKRIDSKNA 157
Query: 188 SLGRDSDDVMSV----------LNALINK---------------KRNTVIVG----GNLA 218
G D+ + +V L+ +I + K N V++G G +
Sbjct: 158 EEGFDALNKFTVDLTELARNGQLDPVIGREDEIRRTIRVLSRRTKNNPVLIGEPGVGKTS 217
Query: 219 AIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSK--GEVEQKL 265
EG+ R IID VP +L + +SL + S SK GE E+++
Sbjct: 218 IAEGLARRIIDD----DVPANLSNCKLLSLDVGSLVAGSKFRGEFEERI 262
>sp|Q6NF05|CLPB_CORDI Chaperone protein ClpB OS=Corynebacterium diphtheriae (strain ATCC
700971 / NCTC 13129 / Biotype gravis) GN=clpB PE=3 SV=1
Length = 849
Score = 36.6 bits (83), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 13/109 (11%)
Query: 189 LGRDSDDVMSVLNALINK-KRNTVIVG----GNLAAIEGVIRGIIDQFERGQVPGDLRYA 243
+GRD + + V+ L + K N V++G G A +EG+ R I+ G VP L+
Sbjct: 182 IGRDQE-IRRVVQVLSRRTKNNPVLIGEPGVGKTAIVEGLARRIV----AGDVPESLKGK 236
Query: 244 QFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGDLKWV 290
ISL L S +K GE E++L + +KS G I+ ++ +L +
Sbjct: 237 TLISLDLGSMVAGAKYRGEFEERLKAVLDEIKSAEGE-IITFIDELHTI 284
>sp|Q6LMY0|CLPB_PHOPR Chaperone protein ClpB OS=Photobacterium profundum GN=clpB PE=3
SV=2
Length = 857
Score = 36.6 bits (83), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 13/106 (12%)
Query: 189 LGRDSDDVMSVLNALINK-KRNTVIVG----GNLAAIEGVIRGIIDQFERGQVPGDLRYA 243
+GRD D++ + L + K N VI+G G A +EG+ + I++ G+VP LR+
Sbjct: 181 IGRD-DEIRRTIQVLQRRTKNNPVIIGQPGVGKTAIVEGLAQRIVN----GEVPEGLRHK 235
Query: 244 QFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGDL 287
+ +SL + S +K GE E++L + + G ++L++ +L
Sbjct: 236 RVLSLDMGSLIAGAKYRGEFEERLKSVLNELSQEEG-SVILFIDEL 280
>sp|P35594|CLPE_STRPN ATP-dependent Clp protease ATP-binding subunit ClpE
OS=Streptococcus pneumoniae serotype 4 (strain ATCC
BAA-334 / TIGR4) GN=clpE PE=3 SV=2
Length = 752
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 14/110 (12%)
Query: 189 LGRDSDDVMSVLNALINK-KRNTVIVG----GNLAAIEGVIRGIIDQFERGQVPGDLRYA 243
+GRD D+++ V+ L + K N V++G G A +EG+ + I+D G VP L+
Sbjct: 133 IGRD-DEIIRVIEILNRRTKNNPVLIGEPGVGKTAVVEGLAQKIVD----GDVPHKLQGK 187
Query: 244 QFISLPLFSFRNQS--KGEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVA 291
Q I L + S + +G+ E+++ +L ++ I+L++ ++ +
Sbjct: 188 QVIRLDVVSLVQGTGIRGQFEERMQKLMEEIRKR--EDIILFIDEIHEIV 235
>sp|Q9RA63|CLPB_THET8 Chaperone protein ClpB OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=clpB PE=1 SV=2
Length = 854
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 13/109 (11%)
Query: 189 LGRDSDDVMSVLNALINK-KRNTVIVG----GNLAAIEGVIRGIIDQFERGQVPGDLRYA 243
+GRD +++ V+ L+ + K N V++G G A +EG+ + I+ +G VP L+
Sbjct: 173 IGRD-EEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIV----KGDVPEGLKGK 227
Query: 244 QFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGDLKWV 290
+ +SL + S +K GE E++L + V G ++L++ +L V
Sbjct: 228 RIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGE-VILFIDELHTV 275
>sp|Q72IK9|CLPB_THET2 Chaperone protein ClpB OS=Thermus thermophilus (strain HB27 / ATCC
BAA-163 / DSM 7039) GN=clpB PE=3 SV=1
Length = 854
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 13/109 (11%)
Query: 189 LGRDSDDVMSVLNALINK-KRNTVIVG----GNLAAIEGVIRGIIDQFERGQVPGDLRYA 243
+GRD +++ V+ L+ + K N V++G G A +EG+ + I+ +G VP L+
Sbjct: 173 IGRD-EEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIV----KGDVPEGLKGK 227
Query: 244 QFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGDLKWV 290
+ +SL + S +K GE E++L + V G ++L++ +L V
Sbjct: 228 RIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGE-VILFIDELHTV 275
>sp|Q82EU9|CLPB1_STRAW Chaperone protein ClpB 1 OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=clpB1 PE=3 SV=1
Length = 870
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 16/120 (13%)
Query: 189 LGRDSDDVMSVLNALINK-KRNTVIVG----GNLAAIEGVIRGIIDQFERGQVPGDLRYA 243
+GRD + + V+ L + K N V++G G A +EG+ + I+ +G VP L+
Sbjct: 182 IGRDQE-IRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIV----KGDVPESLKNK 236
Query: 244 QFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGD 301
+ ++L L + +K GE E++L + +K G+ I+ ++ +L V A GGD
Sbjct: 237 RLVALDLGAMVAGAKYRGEFEERLKTVLAEIKDSDGQ-IITFIDELHTVVGAGA---GGD 292
>sp|O68185|CLPB_LACLM Chaperone protein ClpB OS=Lactococcus lactis subsp. cremoris
(strain MG1363) GN=clpB PE=2 SV=3
Length = 867
Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 15/119 (12%)
Query: 180 ICSQSTNKSLGRDSD--DVMSVLNALINKKRNTVIVG----GNLAAIEGVIRGIIDQFER 233
+ S + + +GRD + DV+ VL+ K N V++G G A +EG+ + I+ R
Sbjct: 174 VKSGNQDPVIGRDEEIRDVIRVLSR--KTKNNPVLIGEPGVGKTAIVEGLAQRIV----R 227
Query: 234 GQVPGDLRYAQFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGDLKWV 290
VP +L+ SL + + +K GE E++L + VK G+ I+L++ +L +
Sbjct: 228 KDVPENLKDKTIFSLDMGALIAGAKYRGEFEERLKAVLNEVKKADGQ-IILFIDELHTI 285
>sp|P74459|CLPB1_SYNY3 Chaperone protein ClpB 1 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=clpB1 PE=3 SV=1
Length = 898
Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 13/109 (11%)
Query: 189 LGRDSDDVMSVLNALINK-KRNTVIVG----GNLAAIEGVIRGIIDQFERGQVPGDLRYA 243
+GRD +++ V+ L + K N V++G G A EG+ + II+ G VP L+
Sbjct: 183 IGRD-EEIRRVIQVLSRRSKNNPVLIGEPGVGKTAIAEGLAQRIIN----GDVPESLKNR 237
Query: 244 QFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGDLKWV 290
Q ISL + S +K GE E++L + V + G+ I+L++ ++ V
Sbjct: 238 QLISLDMGSLIAGAKYRGEFEERLRSVMKEVTNSDGQ-IILFIDEVHTV 285
>sp|Q9CFF3|CLPB_LACLA Chaperone protein ClpB OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=clpB PE=3 SV=1
Length = 867
Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 180 ICSQSTNKSLGRDSD--DVMSVLNALINKKRNTVIVG----GNLAAIEGVIRGIIDQFER 233
+ S + +GRD + DV+ VL+ K N V++G G A +EG+ + I+ R
Sbjct: 174 VKSGKQDPVIGRDEEIRDVIRVLSR--KTKNNPVLIGEPGVGKTAIVEGLAQRIV----R 227
Query: 234 GQVPGDLRYAQFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVA 291
VP +L+ SL + + +K GE E++L + VK G+ I+L++ +L +
Sbjct: 228 KDVPENLKDKTIFSLDMGALIAGAKYRGEFEERLKAVLNEVKKSDGQ-IILFIDELHTIV 286
>sp|Q8CJV9|CLPB_STRCO Chaperone protein ClpB OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=clpB PE=3 SV=1
Length = 865
Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 16/120 (13%)
Query: 189 LGRDSDDVMSVLNALINK-KRNTVIVG----GNLAAIEGVIRGIIDQFERGQVPGDLRYA 243
+GRD + + V+ L + K N V++G G A +EG+ + I+ +G VP L+
Sbjct: 182 IGRDQE-IRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIV----KGDVPESLKDK 236
Query: 244 QFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGD 301
+ ++L L + +K GE E++L + +K G+ +V ++ +L V A GGD
Sbjct: 237 RLVALDLGAMVAGAKYRGEFEERLKTVLAEIKDSDGQ-VVTFIDELHTVVGAGA---GGD 292
>sp|Q8DG71|CLPB2_THEEB Chaperone protein ClpB 2 OS=Thermosynechococcus elongatus (strain
BP-1) GN=clpB2 PE=3 SV=1
Length = 887
Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 13/115 (11%)
Query: 189 LGRDSDDVMSVLNALINK-KRNTVIVG----GNLAAIEGVIRGIIDQFERGQVPGDLRYA 243
+GRD +++ V+ L + K N V++G G A EG+ + II+ G VP L+
Sbjct: 182 IGRD-EEIRRVIQVLSRRTKNNPVLIGEPGVGKTAIAEGLAQRIIN----GDVPESLKNR 236
Query: 244 QFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWAN 296
+ ISL L S +K G+ E +L + V G+ IVL++ +L V AN
Sbjct: 237 RLISLDLGSLVAGAKFRGDFEDRLKAVLHEVTHSEGQ-IVLFIDELHTVVGAGAN 290
>sp|Q9Z6E4|CLPB_STRAL Chaperone protein ClpB OS=Streptomyces albus G GN=clpB PE=2 SV=1
Length = 857
Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 189 LGRDSDDVMSVLNALINK-KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFIS 247
+GRD + + V+ L + K N V++G V+ G+ + +G VP L+ + +S
Sbjct: 182 IGRDQE-IRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDVPESLKDKRLVS 240
Query: 248 LPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGDLKWV 290
L L + +K GE E++L + +K G+ IV ++ +L V
Sbjct: 241 LDLGAMVAGAKYRGEFEERLKTVLSEIKESDGQ-IVTFIDELHTV 284
>sp|P0A5L6|NADE_MYCTU Glutamine-dependent NAD(+) synthetase OS=Mycobacterium tuberculosis
GN=nadE PE=1 SV=1
Length = 679
Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 279 GIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGE 329
GIVL GDL +A W+ Y GD+ N N V + ++ + R V GE
Sbjct: 475 GIVLGTGDLSELALGWSTYGVGDQMSHYNVNAGVPKTLIQHLIRWVISAGE 525
>sp|P0A5L7|NADE_MYCBO Glutamine-dependent NAD(+) synthetase OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=nadE PE=3 SV=1
Length = 679
Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 279 GIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGE 329
GIVL GDL +A W+ Y GD+ N N V + ++ + R V GE
Sbjct: 475 GIVLGTGDLSELALGWSTYGVGDQMSHYNVNAGVPKTLIQHLIRWVISAGE 525
>sp|Q96UX5|HSP78_CANAL Heat shock protein 78, mitochondrial OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=HSP78 PE=3 SV=1
Length = 812
Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 11/105 (10%)
Query: 189 LGRDSDDVMSVLNALINKKRNTVIVG----GNLAAIEGVIRGIIDQFERGQVPGDLRYAQ 244
+GRD + ++ K N V++G G A +EG+ + II RG+VP ++ Q
Sbjct: 108 IGRDHEIRRTIQILSRRTKNNPVLIGNAGTGKTAVMEGLAQRII----RGEVPDSMKDKQ 163
Query: 245 FISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGDL 287
I+L L + +K G+ E KL + V+ G+ ++L++ +
Sbjct: 164 IITLDLAGIISGAKYRGDFESKLKSILKEVEEKNGK-VILFIDEF 207
>sp|Q8FM94|CLPB_COREF Chaperone protein ClpB OS=Corynebacterium efficiens (strain DSM
44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
GN=clpB PE=3 SV=1
Length = 852
Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 13/109 (11%)
Query: 189 LGRDSDDVMSVLNALINK-KRNTVIVG----GNLAAIEGVIRGIIDQFERGQVPGDLRYA 243
+GRD + + V+ L + K N V++G G A +EG+ R I+ G VP L+
Sbjct: 182 IGRDQE-IRRVVQVLSRRTKNNPVLIGEPGVGKTAIVEGLARRIV----AGDVPESLKGK 236
Query: 244 QFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGDLKWV 290
ISL L S +K GE E++L + +K G IV ++ +L +
Sbjct: 237 TLISLDLGSMVAGAKYRGEFEERLKAVLDEIKGANGE-IVTFIDELHTI 284
>sp|Q889C2|CLPB_PSESM Chaperone protein ClpB OS=Pseudomonas syringae pv. tomato (strain
DC3000) GN=clpB PE=3 SV=1
Length = 854
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 13/106 (12%)
Query: 189 LGRDSDDVMSVLNALINK-KRNTVIVG----GNLAAIEGVIRGIIDQFERGQVPGDLRYA 243
+GRD D++ + L + K N V++G G A EG+ + II+ G+VP LR
Sbjct: 181 IGRD-DEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIAEGLAQRIIN----GEVPDGLRGK 235
Query: 244 QFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGDL 287
+ +SL + + +K GE E++L L + G+ I+L++ +L
Sbjct: 236 RLLSLDMGALIAGAKYRGEFEERLKSLLNELSKQEGQ-IILFIDEL 280
>sp|Q7X2S8|CLPB_MEIRU Chaperone protein ClpB OS=Meiothermus ruber GN=clpB PE=3 SV=1
Length = 854
Score = 35.0 bits (79), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 58/109 (53%), Gaps = 13/109 (11%)
Query: 189 LGRDSDDVMSVLNALINK-KRNTVIVG----GNLAAIEGVIRGIIDQFERGQVPGDLRYA 243
+GRD +++ V+ L+ + K N V++G G A +EG+ + I+ +G VP L+
Sbjct: 173 IGRD-EEIRRVIQILLRRTKNNPVLIGEPGVGKTAVVEGLAQRIV----KGDVPEGLKGK 227
Query: 244 QFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGDLKWV 290
+ +SL + S +K GE E++L + G+ I+L++ ++ V
Sbjct: 228 RIVSLQMGSLLAGAKYRGEFEERLKAVIQETVQSAGQ-IILFIDEIHTV 275
>sp|A9A9P8|RL6_METM6 50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=rpl6p PE=3 SV=1
Length = 182
Score = 35.0 bits (79), Expect = 2.2, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 15/101 (14%)
Query: 154 VSRVMREAGFSSSQVKIKVEENVPLGICSQSTNKSLGRD---------SDDVMSVLNALI 204
V+ ++RE + V +++ N + +S K L RD ++D V+
Sbjct: 3 VAALIREEIEIPANVNVEINGNT---VAVKSGAKELKRDLLYPGIEISTEDGKVVIECTF 59
Query: 205 NKKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQF 245
+K T IVG + I+ +I+G+ D FE V +RYA F
Sbjct: 60 PRKAQTAIVGTYRSHIQNMIKGVTDGFEYKLV---IRYAHF 97
>sp|P63288|CLPB_MYCTU Chaperone protein ClpB OS=Mycobacterium tuberculosis GN=clpB PE=3
SV=1
Length = 848
Score = 35.0 bits (79), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 13/118 (11%)
Query: 189 LGRDSDDVMSVLNALINK-KRNTVIVG----GNLAAIEGVIRGIIDQFERGQVPGDLRYA 243
+GRD +++ V+ L + K N V++G G A +EG+ + I+ G VP LR
Sbjct: 181 IGRD-NEIRRVVQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIV----AGDVPESLRDK 235
Query: 244 QFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYG 299
++L L S SK GE E++L + +K+ G+ I+ ++ +L + A G
Sbjct: 236 TIVALDLGSMVAGSKYRGEFEERLKAVLDDIKNSAGQ-IITFIDELHTIVGAGATGEG 292
>sp|P63287|CLPB_MYCBO Chaperone protein ClpB OS=Mycobacterium bovis (strain ATCC BAA-935
/ AF2122/97) GN=clpB PE=3 SV=1
Length = 848
Score = 35.0 bits (79), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 13/118 (11%)
Query: 189 LGRDSDDVMSVLNALINK-KRNTVIVG----GNLAAIEGVIRGIIDQFERGQVPGDLRYA 243
+GRD +++ V+ L + K N V++G G A +EG+ + I+ G VP LR
Sbjct: 181 IGRD-NEIRRVVQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIV----AGDVPESLRDK 235
Query: 244 QFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYG 299
++L L S SK GE E++L + +K+ G+ I+ ++ +L + A G
Sbjct: 236 TIVALDLGSMVAGSKYRGEFEERLKAVLDDIKNSAGQ-IITFIDELHTIVGAGATGEG 292
>sp|Q929G7|CLPB_LISIN Chaperone protein ClpB OS=Listeria innocua serovar 6a (strain CLIP
11262) GN=clpB PE=3 SV=1
Length = 866
Score = 35.0 bits (79), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 134/315 (42%), Gaps = 65/315 (20%)
Query: 10 QALTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWK 69
Q T + + A NLA H ++ +HV +L + +RA + + +
Sbjct: 4 QKFTQQVQQTIADAQNLAIASEHQEIDVIHVFKVLL-TESDFAKRA-----YDVAEVNVE 57
Query: 70 ALELCFNVALNRLPASTITSPLLGPHRHSPRPSLSNALVAAFKRAQAHQRRGSIENQQQQ 129
AL+ + +L ++P + + G ++S AL + A E +Q+Q
Sbjct: 58 ALQKVVDESLRKIPVVSGSGVNYGQ-------AMSQALFQLMRDA---------EKEQKQ 101
Query: 130 QQQPVLALKIEVEQLVISILDDPS--VSRVMREAGFSSSQV-----KIK---------VE 173
++ E L+++++D S ++ +++ S Q+ KI+ E
Sbjct: 102 LDDDFVS----TEHLILAVMDQKSNPITVELKKQNKSKKQINEAILKIRGGKKVTSQNAE 157
Query: 174 EN----------VPLGICSQSTNKSLGRDSDDVMSVLNALINK-KRNTVIVG----GNLA 218
EN + + S + +GRD++ + +V+ L K K N V++G G A
Sbjct: 158 ENYEALTKYGRDLVAEVRSGKLDPVIGRDAE-IRNVIRILSRKTKNNPVLIGEPGVGKTA 216
Query: 219 AIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYM 276
+EG+ + I+ R VP L+ ISL + S +K GE E++L + VK
Sbjct: 217 IVEGLAQRIV----RKDVPEGLKDKTIISLDIGSLIAGAKYRGEFEERLKAVLQEVKQSD 272
Query: 277 GRGIVLYLGDLKWVA 291
G+ I+L++ ++ +
Sbjct: 273 GQ-ILLFIDEIHTIV 286
>sp|P47597|CLPB_MYCGE Chaperone protein ClpB OS=Mycoplasma genitalium (strain ATCC 33530
/ G-37 / NCTC 10195) GN=clpB PE=3 SV=1
Length = 714
Score = 35.0 bits (79), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 116/596 (19%), Positives = 223/596 (37%), Gaps = 103/596 (17%)
Query: 189 LGRDSDDVMSVLNALINK-KRNTVIVG----GNLAAIEGVIRGIIDQFERGQVPGDLRYA 243
+GRD +++ ++ L K K N V++G G A +EG +R ++ VP +LR
Sbjct: 35 IGRD-NEIRRLIEILSRKSKNNPVLIGEPGVGKTAIVEGFVRRVVSN----DVPLNLRDV 89
Query: 244 QFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGD 301
+ L L +K GE E+++ + VK GR I+L++ ++ + N G
Sbjct: 90 EIYELSLSGLIAGTKFQGEFEKRINTILKQVKESNGR-IILFIDEIHQIVGLGRNSSSG- 147
Query: 302 EQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLENMWKLH 361
M+I ++ + + ++G + + Y +LE ++
Sbjct: 148 ---------------AMDIANILKPMLARGEIKVIGATTLKEYREYIEKDGALERRFQ-- 190
Query: 362 PFTIPVGSLSLSLNIDSDSPPTHQFITTNKVQRDGLISWPLLESGAEHLNHLNCSSNVSV 421
I + P + + +T + R W L + + L + +S
Sbjct: 191 -------------KILINEPSSQEALT---IMRGLKTRWELFHNITIFDSALVAAVEMST 234
Query: 422 NYFN-REGQSMATSIIHKKKSAVAVAKSTLPSWLQQYKEE--------SRRNSNMINDNQ 472
Y N R A +I + + + S+ P + K E + + NDN+
Sbjct: 235 RYINERNLPDKAIDLIDEAAAKIKTEMSSEPVAIDSLKREIINLETEYAALKQDKENDNK 294
Query: 473 D---------------LCEKWNSFGNKQTHFSSSSPSSISVSSQECKQLLPKEHQFWVCE 517
L +K +S N+ + +I+ +E ++ K +
Sbjct: 295 QSKKEYLEKLKKQLDALKQKRDSLINEWKK-EKADFENINKLKKEIEEFQTKLETYQSEG 353
Query: 518 GYESSLRSNHHPKPDLLSNPNSSPNSASSS------------EAAEEDSDCLN-SFNKFT 564
YES+ + + P L S+ ++S E AE S K
Sbjct: 354 NYESASKILYSDIPRLKKELESAQQKYATSKHDLFKTEVSENEIAEVISQTTGIPLKKLL 413
Query: 565 D-ENLKVLSDALERKAVVPWQKEIMPEIARTILECR-----SKKEQTWLLFLGADDHNHG 618
+ E K+L E K V Q E + + T++ R K +FLG+ G
Sbjct: 414 ESEKDKLLHLGDEIKKRVKGQDEAIDAVVNTVIRGRVNINDPNKPIGSFIFLGS--TGVG 471
Query: 619 KEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGL---AL 675
K ++A+ +A+V+F N + S + + + G Y E+ GL A+
Sbjct: 472 KTELAKSLAEVLF---DNEKALIRFDMSEYMEKHSVAKLIGAPPGYIGY-EQSGLLTEAV 527
Query: 676 NENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCD 731
P+ V ++++ D L Q +++G + + G +V K+++II + +
Sbjct: 528 RRKPYSVLLFDEIEKAHPDVTNV---LLQVLDDGTLKDSQGRVVNFKNTLIIMTSN 580
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 293,654,496
Number of Sequences: 539616
Number of extensions: 12523975
Number of successful extensions: 46656
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 133
Number of HSP's that attempted gapping in prelim test: 46352
Number of HSP's gapped (non-prelim): 397
length of query: 796
length of database: 191,569,459
effective HSP length: 126
effective length of query: 670
effective length of database: 123,577,843
effective search space: 82797154810
effective search space used: 82797154810
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)