Query 003769
Match_columns 796
No_of_seqs 322 out of 1900
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 11:42:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003769.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003769hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0542 clpA ATP-binding subun 100.0 1E-123 3E-128 1082.7 42.3 592 11-733 1-644 (786)
2 KOG1051 Chaperone HSP104 and r 100.0 3E-117 6E-122 1040.9 52.0 658 1-736 1-714 (898)
3 CHL00095 clpC Clp protease ATP 100.0 5.7E-91 1.2E-95 841.3 50.2 591 8-733 1-662 (821)
4 TIGR03345 VI_ClpV1 type VI sec 100.0 1.2E-89 2.5E-94 827.7 49.0 612 12-733 1-719 (852)
5 TIGR03346 chaperone_ClpB ATP-d 100.0 3.4E-84 7.3E-89 784.6 52.5 631 12-733 1-718 (852)
6 PRK10865 protein disaggregatio 100.0 9E-83 2E-87 769.9 47.8 617 7-733 1-721 (857)
7 TIGR02639 ClpA ATP-dependent C 100.0 2.6E-82 5.7E-87 758.1 44.3 598 12-792 1-648 (731)
8 PRK11034 clpA ATP-dependent Cl 100.0 4.6E-79 9.9E-84 724.1 45.6 557 12-733 2-608 (758)
9 PF07724 AAA_2: AAA domain (Cd 99.9 3.2E-25 6.9E-30 221.6 7.5 114 602-732 1-129 (171)
10 TIGR00382 clpX endopeptidase C 99.8 7.8E-20 1.7E-24 204.9 12.9 144 567-732 67-247 (413)
11 KOG0733 Nuclear AAA ATPase (VC 99.7 1.8E-17 3.8E-22 186.7 14.2 135 206-369 222-364 (802)
12 TIGR01243 CDC48 AAA family ATP 99.7 2.7E-16 5.8E-21 189.9 25.3 133 207-369 212-347 (733)
13 PRK05342 clpX ATP-dependent pr 99.7 1.8E-17 3.9E-22 186.6 12.3 201 567-792 61-311 (412)
14 KOG0730 AAA+-type ATPase [Post 99.7 2.1E-15 4.6E-20 172.3 19.6 132 206-366 217-349 (693)
15 KOG0736 Peroxisome assembly fa 99.6 2.9E-15 6.2E-20 172.7 10.7 147 192-365 680-840 (953)
16 COG1222 RPT1 ATP-dependent 26S 99.5 6.3E-14 1.4E-18 151.1 10.4 140 206-371 184-325 (406)
17 KOG0734 AAA+-type ATPase conta 99.5 1.8E-13 3.8E-18 152.8 12.1 148 193-372 313-475 (752)
18 KOG0741 AAA+-type ATPase [Post 99.5 2.4E-12 5.2E-17 143.7 19.1 137 199-361 247-395 (744)
19 KOG0730 AAA+-type ATPase [Post 99.4 2.9E-13 6.2E-18 155.1 10.2 136 206-373 467-607 (693)
20 TIGR00763 lon ATP-dependent pr 99.4 8.2E-13 1.8E-17 160.5 12.6 154 565-734 308-474 (775)
21 KOG0738 AAA+-type ATPase [Post 99.4 5.2E-13 1.1E-17 144.8 9.2 135 206-368 244-382 (491)
22 COG2256 MGS1 ATPase related to 99.3 2.2E-12 4.7E-17 141.3 9.4 106 206-357 47-154 (436)
23 TIGR03689 pup_AAA proteasome A 99.3 6.1E-12 1.3E-16 144.8 13.0 146 206-370 215-367 (512)
24 COG0464 SpoVK ATPases of the A 99.3 4.6E-12 9.9E-17 146.8 11.4 137 208-373 277-415 (494)
25 KOG0739 AAA+-type ATPase [Post 99.3 3.8E-12 8.1E-17 134.1 8.8 134 207-369 166-300 (439)
26 PLN00020 ribulose bisphosphate 99.3 6.4E-12 1.4E-16 137.6 11.0 135 206-367 147-299 (413)
27 PF00004 AAA: ATPase family as 99.3 2E-11 4.4E-16 114.5 12.8 123 210-359 1-125 (132)
28 KOG0733 Nuclear AAA ATPase (VC 99.3 1E-11 2.2E-16 140.9 10.6 123 206-359 544-671 (802)
29 PRK03992 proteasome-activating 99.3 1.8E-11 3.9E-16 137.8 12.4 138 206-372 164-306 (389)
30 CHL00195 ycf46 Ycf46; Provisio 99.3 2.5E-11 5.4E-16 139.7 12.4 135 206-371 258-395 (489)
31 COG1223 Predicted ATPase (AAA+ 99.2 1.6E-11 3.5E-16 127.5 8.8 124 206-359 150-276 (368)
32 TIGR01243 CDC48 AAA family ATP 99.2 3.8E-11 8.2E-16 145.5 13.3 139 206-372 486-626 (733)
33 TIGR01241 FtsH_fam ATP-depende 99.2 4.8E-11 1E-15 138.4 12.8 137 206-371 87-228 (495)
34 TIGR02881 spore_V_K stage V sp 99.2 4.5E-11 9.6E-16 127.4 11.2 136 207-368 42-178 (261)
35 PTZ00454 26S protease regulato 99.2 5.5E-11 1.2E-15 134.0 12.2 136 206-370 178-318 (398)
36 CHL00181 cbbX CbbX; Provisiona 99.2 5E-11 1.1E-15 128.9 10.9 139 207-369 59-197 (287)
37 TIGR02880 cbbX_cfxQ probable R 99.2 9.9E-11 2.2E-15 126.5 12.0 139 207-369 58-196 (284)
38 CHL00176 ftsH cell division pr 99.2 1.2E-10 2.5E-15 138.1 12.9 152 192-372 191-357 (638)
39 PTZ00361 26 proteosome regulat 99.2 1.4E-10 3.1E-15 131.8 11.7 135 206-369 216-355 (438)
40 KOG0731 AAA+-type ATPase conta 99.1 1.5E-10 3.2E-15 136.7 10.7 153 192-372 319-486 (774)
41 KOG0735 AAA+-type ATPase [Post 99.1 1.6E-10 3.6E-15 132.9 9.2 120 206-356 700-822 (952)
42 TIGR01242 26Sp45 26S proteasom 99.1 8E-10 1.7E-14 123.4 12.9 136 207-371 156-296 (364)
43 PF05496 RuvB_N: Holliday junc 99.0 8.6E-10 1.9E-14 114.1 10.4 82 192-293 28-116 (233)
44 CHL00206 ycf2 Ycf2; Provisiona 99.0 6.2E-10 1.3E-14 139.9 9.5 125 206-368 1629-1804(2281)
45 PRK10733 hflB ATP-dependent me 99.0 1.8E-09 4E-14 128.9 13.1 135 207-370 185-324 (644)
46 COG0465 HflB ATP-dependent Zn 99.0 8.5E-10 1.8E-14 128.1 9.9 151 192-371 158-323 (596)
47 KOG0727 26S proteasome regulat 99.0 8.5E-10 1.9E-14 114.2 8.4 141 187-356 158-313 (408)
48 KOG0737 AAA+-type ATPase [Post 99.0 1.4E-09 3.1E-14 118.3 9.4 137 203-368 123-261 (386)
49 PRK10787 DNA-binding ATP-depen 99.0 3.2E-09 7E-14 128.9 13.2 152 566-733 311-475 (784)
50 KOG0736 Peroxisome assembly fa 99.0 2E-08 4.3E-13 117.2 18.5 149 192-372 406-567 (953)
51 KOG0740 AAA+-type ATPase [Post 99.0 1.4E-09 3.1E-14 121.7 8.8 133 206-369 185-321 (428)
52 KOG2028 ATPase related to the 98.9 1.9E-09 4E-14 116.6 7.2 112 206-358 161-273 (554)
53 KOG0729 26S proteasome regulat 98.9 4.2E-09 9.2E-14 109.8 8.6 126 206-356 210-335 (435)
54 KOG0726 26S proteasome regulat 98.9 1.9E-09 4.2E-14 113.6 6.1 126 206-356 218-343 (440)
55 PF07728 AAA_5: AAA domain (dy 98.8 3.6E-09 7.8E-14 101.5 6.2 113 607-734 2-125 (139)
56 KOG2170 ATPase of the AAA+ sup 98.8 1.5E-08 3.2E-13 107.9 11.2 142 567-733 72-225 (344)
57 PF05496 RuvB_N: Holliday junc 98.8 2.5E-08 5.3E-13 103.4 12.3 123 581-731 26-158 (233)
58 KOG0728 26S proteasome regulat 98.8 1.5E-08 3.3E-13 105.0 10.6 145 199-369 172-319 (404)
59 COG0714 MoxR-like ATPases [Gen 98.8 2.1E-08 4.6E-13 110.6 10.6 140 566-731 13-162 (329)
60 KOG0732 AAA+-type ATPase conta 98.8 6.7E-09 1.5E-13 125.8 7.2 127 206-356 298-425 (1080)
61 PRK12323 DNA polymerase III su 98.8 2.7E-08 5.8E-13 116.6 11.7 133 581-732 18-163 (700)
62 PRK13531 regulatory ATPase Rav 98.8 3.6E-08 7.8E-13 112.5 12.3 147 565-733 8-157 (498)
63 PRK13342 recombination factor 98.8 4.3E-08 9.4E-13 111.4 13.1 121 199-367 27-150 (413)
64 TIGR02640 gas_vesic_GvpN gas v 98.8 5.3E-08 1.2E-12 104.1 12.8 130 585-732 4-160 (262)
65 PRK07003 DNA polymerase III su 98.8 4E-08 8.7E-13 116.5 12.9 131 581-732 18-158 (830)
66 KOG0651 26S proteasome regulat 98.8 2.6E-08 5.5E-13 106.3 9.2 123 206-356 165-290 (388)
67 COG0464 SpoVK ATPases of the A 98.7 7.2E-07 1.6E-11 103.7 21.7 127 200-356 10-137 (494)
68 PRK05201 hslU ATP-dependent pr 98.7 5.1E-08 1.1E-12 109.5 11.0 71 568-646 6-86 (443)
69 KOG0652 26S proteasome regulat 98.7 2.4E-08 5.3E-13 104.0 7.8 140 192-356 176-329 (424)
70 cd00009 AAA The AAA+ (ATPases 98.7 2.2E-07 4.9E-12 87.0 12.5 141 192-366 3-150 (151)
71 PRK14956 DNA polymerase III su 98.7 8.8E-08 1.9E-12 109.6 11.3 130 581-732 20-160 (484)
72 PRK14958 DNA polymerase III su 98.7 1.1E-07 2.4E-12 110.6 12.3 126 581-731 18-157 (509)
73 PRK07940 DNA polymerase III su 98.7 1.3E-07 2.8E-12 106.7 12.2 133 581-732 7-156 (394)
74 PRK14957 DNA polymerase III su 98.7 1.2E-07 2.6E-12 110.7 12.1 126 581-731 18-157 (546)
75 PRK14960 DNA polymerase III su 98.7 1.3E-07 2.8E-12 111.2 12.0 116 581-731 17-156 (702)
76 PF00158 Sigma54_activat: Sigm 98.7 1.2E-07 2.6E-12 95.0 10.2 139 581-731 1-142 (168)
77 PRK14961 DNA polymerase III su 98.6 1.9E-07 4.1E-12 104.5 12.7 131 581-732 18-158 (363)
78 PTZ00112 origin recognition co 98.6 2E-07 4.4E-12 111.1 13.4 152 192-367 760-935 (1164)
79 PRK14952 DNA polymerase III su 98.6 2E-07 4.3E-12 109.8 13.1 133 581-732 15-157 (584)
80 PRK14951 DNA polymerase III su 98.6 1.7E-07 3.6E-12 110.9 12.0 132 581-731 18-162 (618)
81 PRK14949 DNA polymerase III su 98.6 1.8E-07 3.8E-12 113.0 12.0 132 581-732 18-158 (944)
82 PF02861 Clp_N: Clp amino term 98.6 5.8E-08 1.2E-12 77.9 5.4 53 23-80 1-53 (53)
83 PRK00411 cdc6 cell division co 98.6 3.1E-07 6.7E-12 103.2 13.3 149 192-367 35-206 (394)
84 PRK07994 DNA polymerase III su 98.6 1.7E-07 3.6E-12 111.2 11.4 132 581-732 18-158 (647)
85 PRK13341 recombination factor 98.6 2.1E-07 4.6E-12 112.1 12.3 122 201-367 45-167 (725)
86 CHL00181 cbbX CbbX; Provisiona 98.6 2.2E-07 4.8E-12 100.8 10.9 138 565-731 11-169 (287)
87 PRK14959 DNA polymerase III su 98.6 2.1E-07 4.6E-12 109.5 11.3 133 581-732 18-158 (624)
88 PRK14965 DNA polymerase III su 98.6 3E-07 6.5E-12 108.7 12.7 128 581-732 18-158 (576)
89 COG0466 Lon ATP-dependent Lon 98.6 2.3E-07 5E-12 108.3 11.2 158 566-737 312-480 (782)
90 TIGR02902 spore_lonB ATP-depen 98.6 4.2E-07 9.1E-12 106.5 13.4 122 581-712 67-205 (531)
91 TIGR02928 orc1/cdc6 family rep 98.6 5.9E-07 1.3E-11 99.8 13.9 153 192-368 20-199 (365)
92 PLN03025 replication factor C 98.6 3.9E-07 8.4E-12 100.2 12.1 116 581-732 15-138 (319)
93 TIGR02640 gas_vesic_GvpN gas v 98.6 2.6E-07 5.6E-12 98.8 10.3 126 206-367 20-186 (262)
94 KOG0744 AAA+-type ATPase [Post 98.6 2.3E-07 4.9E-12 99.6 9.5 132 210-357 180-317 (423)
95 PRK07764 DNA polymerase III su 98.5 3.5E-07 7.6E-12 111.5 12.2 134 581-733 17-160 (824)
96 PRK14964 DNA polymerase III su 98.5 4.7E-07 1E-11 104.5 12.6 117 581-732 15-155 (491)
97 PRK08691 DNA polymerase III su 98.5 4E-07 8.7E-12 107.9 12.0 129 581-731 18-157 (709)
98 PRK05563 DNA polymerase III su 98.5 5.2E-07 1.1E-11 106.3 12.9 116 581-731 18-157 (559)
99 TIGR02397 dnaX_nterm DNA polym 98.5 6.1E-07 1.3E-11 99.3 12.7 129 581-732 16-156 (355)
100 PRK14955 DNA polymerase III su 98.5 6.4E-07 1.4E-11 101.4 12.6 129 581-731 18-165 (397)
101 PF05621 TniB: Bacterial TniB 98.5 7.4E-07 1.6E-11 96.3 12.3 137 206-367 60-212 (302)
102 TIGR01650 PD_CobS cobaltochela 98.5 6.5E-07 1.4E-11 98.1 12.1 116 606-736 66-191 (327)
103 PRK14962 DNA polymerase III su 98.5 5.4E-07 1.2E-11 104.0 12.0 126 581-731 16-155 (472)
104 TIGR00635 ruvB Holliday juncti 98.5 5.1E-07 1.1E-11 98.0 10.7 82 192-293 9-96 (305)
105 PRK06305 DNA polymerase III su 98.5 6.9E-07 1.5E-11 102.7 11.8 131 581-732 19-160 (451)
106 TIGR01817 nifA Nif-specific re 98.5 7.1E-07 1.5E-11 104.8 12.1 139 581-732 198-340 (534)
107 PRK14969 DNA polymerase III su 98.5 8.9E-07 1.9E-11 103.7 12.9 130 581-731 18-157 (527)
108 TIGR02880 cbbX_cfxQ probable R 98.5 8.6E-07 1.9E-11 96.0 11.8 136 567-731 12-168 (284)
109 COG2255 RuvB Holliday junction 98.5 5.9E-07 1.3E-11 95.3 10.0 82 192-293 30-118 (332)
110 PRK05896 DNA polymerase III su 98.5 7.2E-07 1.6E-11 104.7 11.8 132 581-732 18-158 (605)
111 PF06309 Torsin: Torsin; Inte 98.5 6.8E-07 1.5E-11 85.0 9.4 102 567-685 15-127 (127)
112 PRK14970 DNA polymerase III su 98.5 8.9E-07 1.9E-11 99.0 12.0 118 581-731 19-146 (367)
113 cd00009 AAA The AAA+ (ATPases 98.5 1E-06 2.3E-11 82.4 10.6 129 582-732 1-129 (151)
114 PRK09111 DNA polymerase III su 98.5 8.5E-07 1.9E-11 104.9 12.2 132 581-732 26-171 (598)
115 PRK14963 DNA polymerase III su 98.5 1.1E-06 2.3E-11 102.4 12.8 132 581-732 16-155 (504)
116 PRK07471 DNA polymerase III su 98.5 1E-06 2.2E-11 98.7 11.9 133 581-732 21-180 (365)
117 PRK08084 DNA replication initi 98.5 8.9E-07 1.9E-11 93.3 10.7 125 193-358 29-156 (235)
118 PRK11331 5-methylcytosine-spec 98.4 4.4E-07 9.5E-12 103.0 8.6 158 192-365 180-357 (459)
119 PRK14954 DNA polymerase III su 98.4 1.3E-06 2.8E-11 103.7 12.1 132 581-732 18-166 (620)
120 PRK07133 DNA polymerase III su 98.4 1.5E-06 3.3E-11 103.9 12.6 132 581-732 20-157 (725)
121 PF13177 DNA_pol3_delta2: DNA 98.4 6.1E-07 1.3E-11 89.2 7.8 128 583-732 1-141 (162)
122 PRK08451 DNA polymerase III su 98.4 2E-06 4.4E-11 100.1 13.0 131 581-731 16-155 (535)
123 PHA02244 ATPase-like protein 98.4 3.5E-06 7.6E-11 93.6 14.1 131 581-732 98-230 (383)
124 PRK06645 DNA polymerase III su 98.4 1.9E-06 4.2E-11 100.1 12.6 131 581-731 23-166 (507)
125 PRK14953 DNA polymerase III su 98.4 1.9E-06 4.1E-11 99.9 12.5 132 581-732 18-158 (486)
126 PF00004 AAA: ATPase family as 98.4 4.5E-07 9.8E-12 85.0 6.0 99 607-732 1-111 (132)
127 PF07726 AAA_3: ATPase family 98.4 9.6E-07 2.1E-11 84.3 8.0 105 607-732 2-112 (131)
128 smart00382 AAA ATPases associa 98.4 2E-06 4.3E-11 79.5 10.1 78 207-293 2-93 (148)
129 PRK12402 replication factor C 98.4 2.3E-06 4.9E-11 93.9 11.9 129 581-731 17-163 (337)
130 PF07728 AAA_5: AAA domain (dy 98.3 1.6E-07 3.5E-12 90.0 1.6 113 209-358 1-139 (139)
131 PRK11331 5-methylcytosine-spec 98.3 3.6E-06 7.7E-11 95.7 12.4 141 581-734 177-336 (459)
132 PRK14971 DNA polymerase III su 98.3 3.8E-06 8.2E-11 100.0 13.1 130 581-731 19-159 (614)
133 PRK00080 ruvB Holliday junctio 98.3 2.5E-06 5.4E-11 94.1 10.9 82 192-293 30-117 (328)
134 PRK14950 DNA polymerase III su 98.3 3.4E-06 7.3E-11 100.2 12.6 131 581-733 18-160 (585)
135 TIGR00635 ruvB Holliday juncti 98.3 4.8E-06 1E-10 90.4 12.6 104 581-712 6-111 (305)
136 PHA02544 44 clamp loader, smal 98.3 5.4E-06 1.2E-10 90.5 13.1 134 192-367 26-161 (316)
137 PRK03992 proteasome-activating 98.3 3.4E-06 7.3E-11 95.4 11.6 129 581-734 133-281 (389)
138 PRK00080 ruvB Holliday junctio 98.3 6.1E-06 1.3E-10 91.0 13.2 125 581-732 27-159 (328)
139 PRK05564 DNA polymerase III su 98.3 4.1E-06 9E-11 91.8 11.7 123 581-732 6-132 (313)
140 TIGR02881 spore_V_K stage V sp 98.3 4.3E-06 9.3E-11 89.3 11.4 124 581-731 8-151 (261)
141 PRK14948 DNA polymerase III su 98.3 4E-06 8.7E-11 99.8 11.9 132 581-731 18-159 (620)
142 TIGR02974 phageshock_pspF psp 98.3 4.4E-06 9.6E-11 92.4 11.4 138 581-731 1-142 (329)
143 PRK06647 DNA polymerase III su 98.3 5.4E-06 1.2E-10 97.7 12.6 128 581-732 18-158 (563)
144 TIGR00763 lon ATP-dependent pr 98.3 3.1E-06 6.8E-11 103.6 10.9 125 207-369 347-493 (775)
145 PF05673 DUF815: Protein of un 98.3 7.6E-06 1.7E-10 86.1 12.1 66 206-288 51-116 (249)
146 KOG0989 Replication factor C, 98.3 4E-06 8.7E-11 89.9 10.1 122 581-733 38-169 (346)
147 TIGR03420 DnaA_homol_Hda DnaA 98.2 4.9E-06 1.1E-10 86.1 10.1 80 194-292 23-104 (226)
148 PRK07399 DNA polymerase III su 98.2 5.5E-06 1.2E-10 91.0 11.0 131 581-732 6-162 (314)
149 COG2256 MGS1 ATPase related to 98.2 2.2E-06 4.8E-11 94.8 7.2 105 581-712 26-134 (436)
150 PRK08903 DnaA regulatory inact 98.2 8.5E-06 1.8E-10 84.9 11.2 78 192-292 24-104 (227)
151 PRK14956 DNA polymerase III su 98.2 1.1E-05 2.4E-10 92.6 12.9 137 194-365 24-182 (484)
152 KOG2004 Mitochondrial ATP-depe 98.2 9.2E-06 2E-10 94.9 12.2 156 567-734 401-565 (906)
153 PRK05342 clpX ATP-dependent pr 98.2 5.9E-06 1.3E-10 93.9 10.6 76 206-293 107-188 (412)
154 TIGR00678 holB DNA polymerase 98.2 7.8E-06 1.7E-10 82.7 10.3 115 601-731 11-134 (188)
155 smart00382 AAA ATPases associa 98.2 3.1E-06 6.8E-11 78.2 6.7 118 605-732 3-125 (148)
156 PRK09112 DNA polymerase III su 98.2 1E-05 2.2E-10 90.2 11.7 131 581-731 25-179 (351)
157 PRK00440 rfc replication facto 98.2 9.3E-06 2E-10 88.3 11.0 115 581-732 19-141 (319)
158 CHL00195 ycf46 Ycf46; Provisio 98.2 8.5E-06 1.8E-10 94.4 11.2 100 605-733 260-370 (489)
159 COG0470 HolB ATPase involved i 98.2 1E-05 2.3E-10 87.9 11.2 121 581-732 3-148 (325)
160 PRK05642 DNA replication initi 98.2 1.1E-05 2.4E-10 84.9 11.0 110 208-358 46-155 (234)
161 COG1474 CDC6 Cdc6-related prot 98.1 2.3E-05 4.9E-10 87.9 13.6 146 192-367 22-189 (366)
162 PRK08181 transposase; Validate 98.1 9.6E-06 2.1E-10 87.2 9.9 130 139-292 40-181 (269)
163 PRK09183 transposase/IS protei 98.1 2.9E-05 6.2E-10 83.2 13.2 128 139-290 37-176 (259)
164 PRK14962 DNA polymerase III su 98.1 2.8E-05 6E-10 90.0 13.9 136 194-366 20-174 (472)
165 PHA02544 44 clamp loader, smal 98.1 1.9E-05 4E-10 86.3 11.9 113 581-732 23-140 (316)
166 PRK06893 DNA replication initi 98.1 1.7E-05 3.7E-10 83.2 11.0 65 210-293 42-106 (229)
167 PF01637 Arch_ATPase: Archaeal 98.1 1.3E-05 2.9E-10 82.0 10.0 97 192-291 4-131 (234)
168 PRK05022 anaerobic nitric oxid 98.1 2E-05 4.3E-10 92.2 12.6 139 581-732 189-331 (509)
169 PRK13342 recombination factor 98.1 9.2E-06 2E-10 92.5 9.4 100 581-710 14-120 (413)
170 PF13191 AAA_16: AAA ATPase do 98.1 5.5E-06 1.2E-10 82.3 6.7 43 192-234 5-51 (185)
171 PRK08058 DNA polymerase III su 98.1 1.4E-05 3E-10 88.4 10.5 130 581-732 7-149 (329)
172 KOG0742 AAA+-type ATPase [Post 98.1 1.8E-05 4E-10 87.3 10.5 134 208-372 385-519 (630)
173 PRK11388 DNA-binding transcrip 98.1 1.3E-05 2.7E-10 96.3 10.1 138 581-732 327-466 (638)
174 PRK06526 transposase; Provisio 98.1 2.3E-05 4.9E-10 83.8 11.0 75 206-291 97-172 (254)
175 PRK05707 DNA polymerase III su 98.1 2.7E-05 5.9E-10 86.1 11.8 128 581-732 5-145 (328)
176 COG1219 ClpX ATP-dependent pro 98.1 5.9E-06 1.3E-10 88.9 6.2 78 206-293 96-177 (408)
177 PRK10923 glnG nitrogen regulat 98.0 1.6E-05 3.4E-10 91.7 10.1 138 581-731 140-281 (469)
178 PRK12402 replication factor C 98.0 4.9E-05 1.1E-09 83.4 13.2 96 192-292 20-139 (337)
179 PRK04195 replication factor C 98.0 2.6E-05 5.6E-10 90.7 11.5 111 581-708 16-128 (482)
180 TIGR01242 26Sp45 26S proteasom 98.0 1.4E-05 3.1E-10 89.4 9.1 127 581-733 124-271 (364)
181 TIGR02442 Cob-chelat-sub cobal 98.0 1.6E-05 3.5E-10 95.3 9.9 126 581-731 6-177 (633)
182 COG1219 ClpX ATP-dependent pro 98.0 2.3E-05 4.9E-10 84.5 9.8 145 568-732 52-228 (408)
183 PRK13407 bchI magnesium chelat 98.0 1.5E-05 3.2E-10 88.3 8.8 139 581-732 10-180 (334)
184 PRK09376 rho transcription ter 98.0 2.5E-05 5.4E-10 87.4 10.4 137 195-339 155-317 (416)
185 PRK15429 formate hydrogenlyase 98.0 5.2E-05 1.1E-09 91.8 14.0 138 581-731 378-519 (686)
186 COG3854 SpoIIIAA ncharacterize 98.0 3.2E-05 7E-10 80.1 10.2 132 199-364 128-274 (308)
187 smart00763 AAA_PrkA PrkA AAA d 98.0 3.5E-05 7.6E-10 85.6 10.9 49 578-630 52-102 (361)
188 PRK11608 pspF phage shock prot 98.0 3.6E-05 7.8E-10 85.1 10.9 138 581-732 8-150 (326)
189 KOG0745 Putative ATP-dependent 98.0 2.1E-05 4.6E-10 87.5 8.9 78 206-293 225-306 (564)
190 TIGR02903 spore_lon_C ATP-depe 98.0 5E-05 1.1E-09 90.7 12.8 62 192-253 159-221 (615)
191 TIGR01241 FtsH_fam ATP-depende 98.0 2.5E-05 5.3E-10 91.1 10.0 128 581-733 57-203 (495)
192 PRK00149 dnaA chromosomal repl 98.0 2.5E-05 5.3E-10 90.0 9.9 144 196-371 133-283 (450)
193 PRK14949 DNA polymerase III su 98.0 6.5E-05 1.4E-09 91.3 13.7 115 199-344 28-161 (944)
194 TIGR02030 BchI-ChlI magnesium 98.0 2.9E-05 6.3E-10 86.1 9.9 139 580-731 5-182 (337)
195 PRK10820 DNA-binding transcrip 98.0 3.8E-05 8.2E-10 90.1 11.3 138 581-731 206-347 (520)
196 PRK10787 DNA-binding ATP-depen 98.0 2.8E-05 6E-10 95.1 10.5 118 207-361 349-488 (784)
197 PTZ00454 26S protease regulato 98.0 3.8E-05 8.2E-10 87.1 10.9 128 581-733 147-294 (398)
198 PF13401 AAA_22: AAA domain; P 97.9 5.5E-05 1.2E-09 71.2 10.1 107 206-341 3-125 (131)
199 PRK08769 DNA polymerase III su 97.9 4.8E-05 1E-09 83.8 11.0 132 580-732 5-152 (319)
200 COG1484 DnaC DNA replication p 97.9 9.5E-06 2.1E-10 86.6 5.1 72 206-291 104-180 (254)
201 TIGR00362 DnaA chromosomal rep 97.9 3.1E-05 6.8E-10 87.9 9.5 142 196-370 121-270 (405)
202 TIGR02902 spore_lonB ATP-depen 97.9 3.3E-05 7.1E-10 90.8 9.8 60 192-252 70-131 (531)
203 TIGR00382 clpX endopeptidase C 97.9 1.6E-05 3.6E-10 90.1 7.0 76 206-293 115-196 (413)
204 cd01128 rho_factor Transcripti 97.9 7.2E-05 1.6E-09 79.7 11.2 133 197-338 4-163 (249)
205 COG1220 HslU ATP-dependent pro 97.9 2.5E-05 5.4E-10 84.7 7.5 124 569-714 7-171 (444)
206 CHL00176 ftsH cell division pr 97.9 5.9E-05 1.3E-09 90.2 11.5 127 581-732 185-330 (638)
207 PRK08727 hypothetical protein; 97.9 0.00011 2.3E-09 77.4 12.3 69 206-293 40-108 (233)
208 TIGR03689 pup_AAA proteasome A 97.9 5E-05 1.1E-09 88.3 10.5 129 581-733 184-343 (512)
209 PRK08699 DNA polymerase III su 97.9 0.00011 2.3E-09 81.3 12.6 130 581-732 3-152 (325)
210 PRK12422 chromosomal replicati 97.9 3.7E-05 7.9E-10 88.4 9.1 129 208-370 142-273 (445)
211 COG2255 RuvB Holliday junction 97.9 5.8E-05 1.3E-09 80.5 9.6 105 581-712 28-133 (332)
212 TIGR00390 hslU ATP-dependent p 97.9 2.7E-05 5.9E-10 87.9 7.5 69 569-646 4-83 (441)
213 KOG0745 Putative ATP-dependent 97.9 7.1E-05 1.5E-09 83.5 10.6 127 567-713 135-335 (564)
214 TIGR01650 PD_CobS cobaltochela 97.9 3.8E-05 8.2E-10 84.4 8.5 140 192-367 50-221 (327)
215 PRK12377 putative replication 97.9 2.6E-05 5.7E-10 83.0 7.0 74 206-290 100-175 (248)
216 PRK14960 DNA polymerase III su 97.9 0.00014 2.9E-09 86.3 13.5 119 193-341 21-157 (702)
217 CHL00081 chlI Mg-protoporyphyr 97.9 6.3E-05 1.4E-09 83.7 10.3 139 581-731 19-195 (350)
218 PRK07940 DNA polymerase III su 97.9 0.00013 2.8E-09 82.7 12.9 126 208-369 37-177 (394)
219 PRK13531 regulatory ATPase Rav 97.9 1.6E-05 3.5E-10 91.2 5.7 42 192-234 25-66 (498)
220 PLN03025 replication factor C 97.9 0.0001 2.3E-09 81.0 11.8 94 193-293 18-114 (319)
221 PRK06871 DNA polymerase III su 97.8 0.00011 2.5E-09 81.0 11.9 130 581-732 4-146 (325)
222 PRK13341 recombination factor 97.8 5E-05 1.1E-09 91.9 9.8 108 581-711 30-138 (725)
223 TIGR00368 Mg chelatase-related 97.8 7.2E-05 1.6E-09 87.1 10.7 138 581-732 194-347 (499)
224 PRK06090 DNA polymerase III su 97.8 0.00012 2.6E-09 80.7 11.8 129 581-732 5-147 (319)
225 PHA02244 ATPase-like protein 97.8 5.1E-05 1.1E-09 84.5 8.9 123 206-366 118-261 (383)
226 PRK04195 replication factor C 97.8 7.8E-05 1.7E-09 86.7 11.0 85 192-292 19-112 (482)
227 PRK14088 dnaA chromosomal repl 97.8 5.8E-05 1.3E-09 86.7 9.7 78 208-293 131-209 (440)
228 PRK07003 DNA polymerase III su 97.8 0.00016 3.6E-09 86.5 13.5 130 194-358 23-170 (830)
229 PRK12323 DNA polymerase III su 97.8 0.00012 2.7E-09 86.5 12.3 115 197-342 26-164 (700)
230 COG1223 Predicted ATPase (AAA+ 97.8 2.6E-05 5.7E-10 82.0 5.8 113 576-707 120-247 (368)
231 PRK12608 transcription termina 97.8 0.00017 3.7E-09 80.5 12.5 137 194-339 118-281 (380)
232 PRK11361 acetoacetate metaboli 97.8 9.6E-05 2.1E-09 84.7 10.9 138 581-731 145-286 (457)
233 TIGR03420 DnaA_homol_Hda DnaA 97.8 5E-05 1.1E-09 78.6 7.7 97 584-708 22-118 (226)
234 PTZ00361 26 proteosome regulat 97.8 7E-05 1.5E-09 85.8 9.5 125 581-733 185-332 (438)
235 COG0466 Lon ATP-dependent Lon 97.8 5E-05 1.1E-09 89.3 8.3 73 208-293 351-432 (782)
236 PF01078 Mg_chelatase: Magnesi 97.8 4.3E-05 9.4E-10 78.8 7.0 134 581-732 5-158 (206)
237 PF13173 AAA_14: AAA domain 97.8 9E-05 2E-09 70.5 8.7 112 207-358 2-114 (128)
238 TIGR02639 ClpA ATP-dependent C 97.8 4.8E-05 1E-09 92.7 8.6 59 103-174 1-59 (731)
239 TIGR01818 ntrC nitrogen regula 97.8 8.6E-05 1.9E-09 85.4 10.2 140 581-731 136-277 (463)
240 TIGR02928 orc1/cdc6 family rep 97.8 0.0001 2.2E-09 82.1 10.3 142 581-732 17-174 (365)
241 PRK14958 DNA polymerase III su 97.8 0.00023 5E-09 83.3 13.6 92 196-293 25-134 (509)
242 PRK14087 dnaA chromosomal repl 97.8 8.2E-05 1.8E-09 85.8 9.4 76 208-292 142-220 (450)
243 PRK06893 DNA replication initi 97.8 0.0001 2.2E-09 77.4 9.4 98 602-732 37-134 (229)
244 PRK06921 hypothetical protein; 97.7 9.4E-05 2E-09 79.5 9.1 72 207-289 117-188 (266)
245 TIGR02329 propionate_PrpR prop 97.7 0.00016 3.4E-09 84.9 11.4 140 581-731 214-356 (526)
246 TIGR02903 spore_lon_C ATP-depe 97.7 0.00015 3.3E-09 86.6 11.6 122 581-712 156-295 (615)
247 PRK07952 DNA replication prote 97.7 5.7E-05 1.2E-09 80.2 6.9 73 208-291 100-175 (244)
248 COG1222 RPT1 ATP-dependent 26S 97.7 0.00014 3E-09 79.8 9.8 108 601-734 183-301 (406)
249 PRK15424 propionate catabolism 97.7 0.0002 4.3E-09 84.1 11.7 137 581-731 221-371 (538)
250 PRK07993 DNA polymerase III su 97.7 0.00022 4.7E-09 79.2 11.4 130 581-732 4-147 (334)
251 COG0714 MoxR-like ATPases [Gen 97.7 7.1E-05 1.5E-09 82.7 7.3 134 192-358 29-180 (329)
252 PRK07994 DNA polymerase III su 97.7 0.00037 7.9E-09 83.3 13.7 113 198-341 27-158 (647)
253 TIGR02915 PEP_resp_reg putativ 97.7 0.00016 3.4E-09 82.8 10.2 138 581-732 141-283 (445)
254 KOG0743 AAA+-type ATPase [Post 97.7 8.3E-05 1.8E-09 83.7 7.6 69 206-294 234-302 (457)
255 PRK08116 hypothetical protein; 97.7 8.2E-05 1.8E-09 80.1 7.3 70 209-289 116-189 (268)
256 PF02861 Clp_N: Clp amino term 97.7 4.2E-05 9.1E-10 61.2 3.7 49 114-175 1-51 (53)
257 PF01695 IstB_IS21: IstB-like 97.7 1.6E-05 3.5E-10 80.4 1.6 73 206-289 46-119 (178)
258 TIGR02974 phageshock_pspF psp 97.6 0.00021 4.6E-09 79.1 10.3 87 195-293 7-108 (329)
259 COG2812 DnaX DNA polymerase II 97.6 6.2E-05 1.4E-09 87.2 6.2 130 581-731 18-157 (515)
260 KOG2004 Mitochondrial ATP-depe 97.6 0.0001 2.3E-09 86.4 7.9 87 192-291 416-518 (906)
261 TIGR00767 rho transcription te 97.6 0.00011 2.4E-09 82.6 7.8 93 197-295 156-272 (415)
262 PRK14964 DNA polymerase III su 97.6 0.0006 1.3E-08 79.2 14.0 93 194-292 19-130 (491)
263 PRK14961 DNA polymerase III su 97.6 0.00069 1.5E-08 76.0 14.2 135 197-368 26-178 (363)
264 PRK08903 DnaA regulatory inact 97.6 0.00026 5.7E-09 73.7 10.2 90 603-731 41-130 (227)
265 PF00308 Bac_DnaA: Bacterial d 97.6 0.00012 2.6E-09 76.5 7.2 93 192-293 15-112 (219)
266 TIGR03015 pepcterm_ATPase puta 97.6 0.00025 5.4E-09 75.4 9.7 95 193-292 25-137 (269)
267 smart00350 MCM minichromosome 97.6 0.00027 5.8E-09 82.8 10.7 150 566-732 192-352 (509)
268 PRK06620 hypothetical protein; 97.6 0.00019 4.2E-09 74.7 8.4 108 193-359 24-137 (214)
269 PRK14086 dnaA chromosomal repl 97.6 0.00015 3.3E-09 85.6 8.5 77 208-293 315-392 (617)
270 PRK07764 DNA polymerase III su 97.6 0.0006 1.3E-08 83.7 13.9 116 196-341 24-159 (824)
271 PRK14957 DNA polymerase III su 97.6 0.00073 1.6E-08 79.5 13.5 127 196-357 25-169 (546)
272 PRK15115 response regulator Gl 97.6 0.00032 7E-09 80.3 10.3 140 581-731 136-277 (444)
273 PRK11608 pspF phage shock prot 97.5 0.00043 9.3E-09 76.6 10.8 142 192-367 11-178 (326)
274 KOG0741 AAA+-type ATPase [Post 97.5 0.0022 4.7E-08 73.5 16.2 174 137-354 476-663 (744)
275 KOG0727 26S proteasome regulat 97.5 0.00017 3.7E-09 75.5 6.9 107 601-733 187-304 (408)
276 TIGR03345 VI_ClpV1 type VI sec 97.5 0.00019 4.2E-09 88.7 8.5 59 103-174 1-61 (852)
277 PRK14952 DNA polymerase III su 97.5 0.00097 2.1E-08 79.1 13.9 119 194-342 19-158 (584)
278 KOG2028 ATPase related to the 97.5 7.9E-05 1.7E-09 81.5 4.4 112 581-713 140-253 (554)
279 PRK06964 DNA polymerase III su 97.5 0.00028 6.1E-09 78.5 8.8 131 581-732 3-171 (342)
280 PRK08116 hypothetical protein; 97.5 0.00024 5.2E-09 76.5 7.9 101 605-731 115-219 (268)
281 PRK06835 DNA replication prote 97.5 0.0002 4.2E-09 79.4 7.4 75 206-291 182-259 (329)
282 TIGR00390 hslU ATP-dependent p 97.5 0.00042 9.1E-09 78.5 10.0 70 206-294 46-117 (441)
283 PRK08691 DNA polymerase III su 97.5 0.00087 1.9E-08 80.2 12.9 92 195-292 24-133 (709)
284 PRK10865 protein disaggregatio 97.5 0.00028 6E-09 87.4 9.2 59 102-173 5-65 (857)
285 PLN00020 ribulose bisphosphate 97.5 0.00055 1.2E-08 76.2 10.4 111 602-734 146-279 (413)
286 PF07724 AAA_2: AAA domain (Cd 97.5 5.4E-05 1.2E-09 76.1 2.4 78 207-293 3-83 (171)
287 PRK06645 DNA polymerase III su 97.5 0.0011 2.4E-08 77.4 13.5 94 193-292 26-142 (507)
288 PRK08939 primosomal protein Dn 97.5 0.00011 2.4E-09 80.6 4.9 72 207-289 156-228 (306)
289 PF13173 AAA_14: AAA domain 97.5 0.0003 6.4E-09 66.9 7.2 81 606-709 4-87 (128)
290 PRK09862 putative ATP-dependen 97.5 0.00027 5.9E-09 82.2 8.1 138 581-732 193-346 (506)
291 TIGR00678 holB DNA polymerase 97.5 0.0014 2.9E-08 66.4 12.2 87 200-293 5-111 (188)
292 PRK10733 hflB ATP-dependent me 97.4 0.00042 9.2E-09 83.3 9.8 102 607-733 188-300 (644)
293 PRK14970 DNA polymerase III su 97.4 0.0011 2.5E-08 74.1 12.7 94 193-292 23-122 (367)
294 PRK14959 DNA polymerase III su 97.4 0.0013 2.8E-08 78.1 13.6 81 207-293 38-134 (624)
295 PF12775 AAA_7: P-loop contain 97.4 0.00025 5.5E-09 76.5 7.1 140 197-367 23-181 (272)
296 TIGR02397 dnaX_nterm DNA polym 97.4 0.0015 3.3E-08 72.3 13.5 95 192-292 19-131 (355)
297 PRK14969 DNA polymerase III su 97.4 0.0014 3.1E-08 77.0 13.6 119 194-342 22-159 (527)
298 PRK04132 replication factor C 97.4 0.00039 8.4E-09 85.1 8.8 99 603-733 563-670 (846)
299 TIGR01817 nifA Nif-specific re 97.4 0.00052 1.1E-08 80.9 9.4 90 192-293 201-305 (534)
300 PRK05563 DNA polymerase III su 97.4 0.0015 3.2E-08 77.5 13.2 91 196-292 25-133 (559)
301 PHA00729 NTP-binding motif con 97.4 0.00042 9E-09 72.7 7.5 36 197-232 6-42 (226)
302 PRK06526 transposase; Provisio 97.4 0.00018 3.9E-09 76.9 4.9 88 605-708 99-187 (254)
303 PRK11034 clpA ATP-dependent Cl 97.4 0.0005 1.1E-08 83.8 9.3 59 103-174 2-60 (758)
304 PRK05201 hslU ATP-dependent pr 97.4 0.00058 1.3E-08 77.4 9.0 58 207-274 50-109 (443)
305 PRK05917 DNA polymerase III su 97.4 0.00079 1.7E-08 73.2 9.8 111 601-732 16-134 (290)
306 PRK14951 DNA polymerase III su 97.4 0.0014 3E-08 78.2 12.5 91 197-293 26-139 (618)
307 TIGR02031 BchD-ChlD magnesium 97.3 0.00097 2.1E-08 79.5 10.9 122 594-732 6-136 (589)
308 PF14532 Sigma54_activ_2: Sigm 97.3 0.00036 7.8E-09 67.2 5.6 125 197-367 11-137 (138)
309 PRK07952 DNA replication prote 97.3 0.00069 1.5E-08 72.0 8.2 105 604-732 99-204 (244)
310 PRK08084 DNA replication initi 97.3 0.00094 2E-08 70.4 9.1 82 604-709 45-130 (235)
311 PF01078 Mg_chelatase: Magnesi 97.3 0.00016 3.5E-09 74.6 3.1 38 193-230 8-45 (206)
312 PRK15429 formate hydrogenlyase 97.3 0.0019 4.1E-08 78.5 12.7 89 192-293 381-485 (686)
313 PF14532 Sigma54_activ_2: Sigm 97.3 0.0011 2.4E-08 63.8 8.7 108 582-731 1-108 (138)
314 PRK07133 DNA polymerase III su 97.3 0.0033 7.1E-08 75.9 14.4 130 199-365 30-174 (725)
315 PF05673 DUF815: Protein of un 97.3 0.0023 4.9E-08 67.7 11.5 121 581-732 29-150 (249)
316 TIGR03346 chaperone_ClpB ATP-d 97.3 0.00068 1.5E-08 84.2 8.8 59 103-174 1-61 (852)
317 KOG0735 AAA+-type ATPase [Post 97.2 0.0022 4.8E-08 75.6 12.2 80 206-293 430-509 (952)
318 PRK00411 cdc6 cell division co 97.2 0.0019 4E-08 72.8 11.4 141 577-732 30-182 (394)
319 KOG0989 Replication factor C, 97.2 0.0018 3.8E-08 70.1 10.1 95 193-293 42-144 (346)
320 PRK10536 hypothetical protein; 97.2 0.0064 1.4E-07 65.0 14.3 45 189-234 57-102 (262)
321 cd01120 RecA-like_NTPases RecA 97.2 0.0029 6.2E-08 60.8 10.8 24 210-233 2-25 (165)
322 PRK09111 DNA polymerase III su 97.2 0.0035 7.5E-08 74.8 13.6 95 192-292 29-146 (598)
323 PRK14963 DNA polymerase III su 97.2 0.0054 1.2E-07 71.8 15.0 93 194-292 20-130 (504)
324 PRK11388 DNA-binding transcrip 97.2 0.0017 3.7E-08 78.2 11.1 87 192-293 330-431 (638)
325 PRK14948 DNA polymerase III su 97.2 0.0027 5.9E-08 76.0 12.6 131 193-358 21-172 (620)
326 COG1221 PspF Transcriptional r 97.2 0.00069 1.5E-08 76.4 7.2 132 205-373 99-252 (403)
327 PF00158 Sigma54_activat: Sigm 97.2 0.00093 2E-08 67.1 7.5 85 194-293 6-108 (168)
328 PF05729 NACHT: NACHT domain 97.2 0.0011 2.5E-08 64.2 7.8 82 210-293 3-96 (166)
329 PRK10365 transcriptional regul 97.2 0.0016 3.4E-08 74.4 10.1 137 581-731 141-282 (441)
330 COG2204 AtoC Response regulato 97.2 0.0018 3.8E-08 74.4 10.2 136 576-732 140-285 (464)
331 KOG0738 AAA+-type ATPase [Post 97.2 0.0019 4E-08 71.7 9.9 108 601-733 242-361 (491)
332 PRK00440 rfc replication facto 97.2 0.0013 2.8E-08 71.6 8.7 94 192-292 22-116 (319)
333 cd01131 PilT Pilus retraction 97.1 0.0025 5.4E-08 65.5 10.2 97 605-710 2-100 (198)
334 COG2607 Predicted ATPase (AAA+ 97.1 0.0013 2.9E-08 68.9 8.0 66 206-288 84-149 (287)
335 PRK14965 DNA polymerase III su 97.1 0.0043 9.4E-08 73.8 13.5 93 194-292 22-133 (576)
336 PF00931 NB-ARC: NB-ARC domain 97.1 0.00095 2.1E-08 71.4 7.3 92 192-291 1-114 (287)
337 PTZ00111 DNA replication licen 97.1 0.0037 8.1E-08 76.6 12.9 148 566-732 439-609 (915)
338 PRK06835 DNA replication prote 97.1 0.0012 2.5E-08 73.3 7.9 104 604-732 183-288 (329)
339 PRK12377 putative replication 97.1 0.0017 3.6E-08 69.3 8.4 90 604-709 101-192 (248)
340 PRK08451 DNA polymerase III su 97.1 0.0051 1.1E-07 72.2 13.1 94 194-293 20-132 (535)
341 PRK05022 anaerobic nitric oxid 97.1 0.0032 6.9E-08 73.9 11.5 56 192-254 192-250 (509)
342 PRK09087 hypothetical protein; 97.1 0.0022 4.8E-08 67.4 9.0 113 193-358 29-142 (226)
343 PRK05896 DNA polymerase III su 97.0 0.0073 1.6E-07 71.6 14.0 137 193-366 22-176 (605)
344 TIGR00764 lon_rel lon-related 97.0 0.0014 3.1E-08 78.3 8.3 52 572-633 13-64 (608)
345 PRK08181 transposase; Validate 97.0 0.0015 3.2E-08 70.5 7.6 102 605-732 107-208 (269)
346 PTZ00112 origin recognition co 97.0 0.0046 9.9E-08 75.2 12.3 145 575-734 753-913 (1164)
347 PRK05642 DNA replication initi 97.0 0.0025 5.5E-08 67.2 9.2 93 605-731 46-138 (234)
348 PRK14955 DNA polymerase III su 97.0 0.0076 1.6E-07 68.6 13.6 40 194-233 22-64 (397)
349 COG1221 PspF Transcriptional r 97.0 0.0023 5E-08 72.3 9.1 137 581-732 80-223 (403)
350 PRK08727 hypothetical protein; 97.0 0.0042 9.1E-08 65.4 10.3 82 603-709 40-122 (233)
351 TIGR00602 rad24 checkpoint pro 97.0 0.0027 5.8E-08 76.0 9.5 23 210-232 113-135 (637)
352 PRK06647 DNA polymerase III su 96.9 0.0083 1.8E-07 71.2 13.5 125 199-358 28-170 (563)
353 PRK05818 DNA polymerase III su 96.9 0.0019 4.1E-08 69.0 7.4 107 605-732 8-127 (261)
354 PRK14950 DNA polymerase III su 96.9 0.01 2.2E-07 70.9 14.2 93 194-292 22-134 (585)
355 PRK06305 DNA polymerase III su 96.9 0.012 2.7E-07 68.0 14.4 136 194-366 24-178 (451)
356 PRK13407 bchI magnesium chelat 96.9 0.002 4.3E-08 71.6 7.6 39 193-231 13-53 (334)
357 TIGR00368 Mg chelatase-related 96.9 0.0022 4.7E-08 74.9 8.2 39 192-230 196-234 (499)
358 TIGR02442 Cob-chelat-sub cobal 96.9 0.0033 7.1E-08 75.7 9.6 39 193-231 9-49 (633)
359 TIGR00362 DnaA chromosomal rep 96.9 0.002 4.4E-08 73.2 7.3 90 604-707 136-226 (405)
360 COG1224 TIP49 DNA helicase TIP 96.9 0.0027 5.8E-08 69.9 7.7 62 581-646 41-103 (450)
361 COG3604 FhlA Transcriptional r 96.8 0.0044 9.6E-08 70.9 9.6 132 581-732 225-367 (550)
362 COG0470 HolB ATPase involved i 96.8 0.017 3.6E-07 62.9 13.9 120 194-340 8-147 (325)
363 PRK14953 DNA polymerase III su 96.8 0.014 3E-07 68.2 13.9 81 206-292 36-133 (486)
364 PF00910 RNA_helicase: RNA hel 96.8 0.0043 9.3E-08 57.4 7.9 98 608-731 2-106 (107)
365 KOG0739 AAA+-type ATPase [Post 96.8 0.0015 3.2E-08 70.3 5.3 75 601-691 163-237 (439)
366 KOG0734 AAA+-type ATPase conta 96.8 0.0024 5.2E-08 73.2 7.2 91 581-690 306-407 (752)
367 PRK15424 propionate catabolism 96.8 0.0068 1.5E-07 71.4 11.0 63 192-254 224-290 (538)
368 KOG0651 26S proteasome regulat 96.7 0.0052 1.1E-07 66.6 8.5 107 602-734 164-282 (388)
369 KOG0731 AAA+-type ATPase conta 96.7 0.0025 5.4E-08 76.6 6.8 128 581-732 313-459 (774)
370 PF02562 PhoH: PhoH-like prote 96.7 0.0082 1.8E-07 62.2 9.7 120 189-340 2-156 (205)
371 CHL00081 chlI Mg-protoporyphyr 96.7 0.0035 7.6E-08 70.0 7.5 42 192-233 21-64 (350)
372 PRK07471 DNA polymerase III su 96.7 0.026 5.6E-07 63.6 14.5 37 197-233 29-67 (365)
373 PRK00771 signal recognition pa 96.7 0.029 6.3E-07 64.6 15.0 80 154-234 30-122 (437)
374 PRK07276 DNA polymerase III su 96.7 0.0052 1.1E-07 66.9 8.4 126 583-732 6-143 (290)
375 CHL00095 clpC Clp protease ATP 96.7 0.0043 9.3E-08 76.9 8.6 66 11-81 79-144 (821)
376 PF06068 TIP49: TIP49 C-termin 96.7 0.0039 8.4E-08 69.4 7.2 61 581-645 26-87 (398)
377 KOG0991 Replication factor C, 96.6 0.0037 8E-08 65.3 6.5 94 192-292 31-127 (333)
378 COG0703 AroK Shikimate kinase 96.6 0.0028 6.1E-08 63.7 5.5 33 207-249 2-34 (172)
379 KOG1969 DNA replication checkp 96.6 0.0037 8E-08 74.1 7.1 71 206-288 325-397 (877)
380 TIGR02329 propionate_PrpR prop 96.6 0.008 1.7E-07 70.7 10.1 56 192-254 217-275 (526)
381 PRK10820 DNA-binding transcrip 96.6 0.011 2.3E-07 69.7 11.0 56 192-254 209-267 (520)
382 PRK09112 DNA polymerase III su 96.6 0.034 7.4E-07 62.3 14.2 41 194-234 30-72 (351)
383 TIGR02915 PEP_resp_reg putativ 96.6 0.0068 1.5E-07 69.5 8.9 86 196-293 151-248 (445)
384 PF13401 AAA_22: AAA domain; P 96.6 0.00098 2.1E-08 62.6 1.7 100 603-707 3-113 (131)
385 PF00437 T2SE: Type II/IV secr 96.6 0.0046 9.9E-08 66.2 7.0 98 603-712 126-224 (270)
386 COG1474 CDC6 Cdc6-related prot 96.6 0.011 2.4E-07 66.6 10.3 138 581-732 19-165 (366)
387 PRK14954 DNA polymerase III su 96.5 0.021 4.7E-07 68.3 13.0 25 209-233 40-64 (620)
388 KOG2035 Replication factor C, 96.5 0.006 1.3E-07 65.3 7.4 136 604-771 34-190 (351)
389 CHL00206 ycf2 Ycf2; Provisiona 96.5 0.0042 9.2E-08 80.3 7.3 118 602-732 1628-1781(2281)
390 TIGR00602 rad24 checkpoint pro 96.5 0.0074 1.6E-07 72.3 9.0 48 581-630 86-134 (637)
391 PRK08939 primosomal protein Dn 96.5 0.0062 1.3E-07 67.0 7.7 106 603-732 155-260 (306)
392 TIGR02031 BchD-ChlD magnesium 96.5 0.0059 1.3E-07 72.9 8.0 122 206-361 15-154 (589)
393 PRK07132 DNA polymerase III su 96.5 0.026 5.6E-07 61.9 12.1 109 601-732 15-129 (299)
394 PRK06921 hypothetical protein; 96.5 0.0059 1.3E-07 65.8 7.0 101 603-732 116-224 (266)
395 PF13207 AAA_17: AAA domain; P 96.5 0.0032 7E-08 58.5 4.3 31 210-250 2-32 (121)
396 PF07693 KAP_NTPase: KAP famil 96.5 0.051 1.1E-06 59.4 14.4 70 277-369 171-251 (325)
397 TIGR01420 pilT_fam pilus retra 96.4 0.013 2.9E-07 65.3 9.9 102 602-711 120-222 (343)
398 PLN02199 shikimate kinase 96.4 0.012 2.6E-07 64.1 9.1 53 187-249 79-134 (303)
399 TIGR03574 selen_PSTK L-seryl-t 96.4 0.0077 1.7E-07 63.8 7.3 76 210-292 2-81 (249)
400 COG0563 Adk Adenylate kinase a 96.4 0.0018 4E-08 65.6 2.5 63 209-288 2-64 (178)
401 PRK05564 DNA polymerase III su 96.4 0.052 1.1E-06 59.6 14.0 90 197-292 14-107 (313)
402 PTZ00111 DNA replication licen 96.4 0.0023 5.1E-08 78.4 3.5 130 209-368 494-644 (915)
403 cd01129 PulE-GspE PulE/GspE Th 96.3 0.014 3.1E-07 62.8 9.0 99 602-712 78-177 (264)
404 PRK10923 glnG nitrogen regulat 96.3 0.017 3.8E-07 66.7 10.3 55 192-253 143-200 (469)
405 PRK08118 topology modulation p 96.3 0.0068 1.5E-07 60.7 5.9 32 208-249 2-33 (167)
406 TIGR01618 phage_P_loop phage n 96.3 0.0077 1.7E-07 63.1 6.4 87 602-702 10-101 (220)
407 COG1224 TIP49 DNA helicase TIP 96.3 0.0094 2E-07 65.8 7.1 44 206-250 64-108 (450)
408 TIGR02030 BchI-ChlI magnesium 96.3 0.0081 1.8E-07 66.9 6.8 38 194-231 10-49 (337)
409 smart00350 MCM minichromosome 96.2 0.0024 5.2E-08 74.9 2.7 23 209-231 238-260 (509)
410 TIGR02524 dot_icm_DotB Dot/Icm 96.2 0.014 3.1E-07 65.5 8.7 102 602-712 132-240 (358)
411 PRK00131 aroK shikimate kinase 96.2 0.0099 2.1E-07 58.5 6.7 26 206-231 3-28 (175)
412 COG0465 HflB ATP-dependent Zn 96.2 0.0079 1.7E-07 71.0 6.7 94 581-691 152-254 (596)
413 PRK13949 shikimate kinase; Pro 96.2 0.0082 1.8E-07 60.2 6.0 32 208-249 2-33 (169)
414 TIGR02688 conserved hypothetic 96.2 0.013 2.8E-07 66.7 8.0 25 206-230 208-232 (449)
415 PF13604 AAA_30: AAA domain; P 96.2 0.017 3.7E-07 59.3 8.4 110 193-337 3-128 (196)
416 PRK09183 transposase/IS protei 96.2 0.0084 1.8E-07 64.3 6.3 90 605-708 103-192 (259)
417 PF12780 AAA_8: P-loop contain 96.2 0.025 5.5E-07 61.0 9.8 81 195-288 19-99 (268)
418 cd01121 Sms Sms (bacterial rad 96.2 0.033 7.3E-07 62.9 11.2 79 206-293 81-173 (372)
419 PF01695 IstB_IS21: IstB-like 96.1 0.0079 1.7E-07 60.9 5.4 91 604-709 47-137 (178)
420 COG3267 ExeA Type II secretory 96.1 0.051 1.1E-06 57.8 11.4 94 192-293 35-146 (269)
421 PRK13947 shikimate kinase; Pro 96.1 0.0053 1.2E-07 60.8 4.0 32 208-249 2-33 (171)
422 PRK15455 PrkA family serine pr 96.1 0.0074 1.6E-07 70.8 5.6 48 581-630 78-127 (644)
423 PRK14971 DNA polymerase III su 96.1 0.055 1.2E-06 65.0 13.0 125 199-358 29-172 (614)
424 cd00046 DEXDc DEAD-like helica 96.1 0.021 4.5E-07 52.5 7.5 26 208-233 1-26 (144)
425 PRK11361 acetoacetate metaboli 96.0 0.03 6.5E-07 64.3 10.4 88 194-293 150-252 (457)
426 PRK06217 hypothetical protein; 96.0 0.014 3E-07 59.0 6.7 54 209-274 3-63 (183)
427 PRK08058 DNA polymerase III su 96.0 0.062 1.4E-06 59.6 12.4 29 206-234 26-55 (329)
428 PF00931 NB-ARC: NB-ARC domain 96.0 0.0085 1.8E-07 64.1 5.4 100 586-691 3-113 (287)
429 KOG1051 Chaperone HSP104 and r 96.0 0.027 5.9E-07 69.3 10.1 87 193-290 568-672 (898)
430 PF00308 Bac_DnaA: Bacterial d 96.0 0.01 2.3E-07 62.0 5.8 125 581-731 11-138 (219)
431 PRK15115 response regulator Gl 96.0 0.022 4.8E-07 65.3 8.9 87 192-293 139-243 (444)
432 PRK00625 shikimate kinase; Pro 96.0 0.0062 1.4E-07 61.4 3.7 31 209-249 2-32 (173)
433 PF14516 AAA_35: AAA-like doma 96.0 0.048 1.1E-06 60.6 11.1 94 192-293 16-142 (331)
434 COG2909 MalT ATP-dependent tra 95.9 0.034 7.3E-07 67.4 10.1 89 198-293 26-144 (894)
435 KOG0729 26S proteasome regulat 95.9 0.017 3.7E-07 61.4 6.8 106 601-732 209-325 (435)
436 cd01130 VirB11-like_ATPase Typ 95.9 0.026 5.6E-07 57.2 7.9 95 603-709 24-124 (186)
437 KOG0744 AAA+-type ATPase [Post 95.9 0.026 5.7E-07 61.6 8.1 122 588-733 155-307 (423)
438 PRK05057 aroK shikimate kinase 95.9 0.022 4.8E-07 57.2 7.2 34 206-249 3-36 (172)
439 PRK13900 type IV secretion sys 95.8 0.027 6E-07 62.6 8.6 85 194-288 147-245 (332)
440 PRK04296 thymidine kinase; Pro 95.8 0.017 3.6E-07 59.0 6.3 24 210-233 5-28 (190)
441 PRK14088 dnaA chromosomal repl 95.8 0.029 6.3E-07 64.8 8.9 75 605-691 131-206 (440)
442 TIGR03015 pepcterm_ATPase puta 95.8 0.023 5.1E-07 60.3 7.6 96 603-707 42-148 (269)
443 PF01583 APS_kinase: Adenylyls 95.8 0.028 6E-07 55.9 7.5 67 209-285 4-80 (156)
444 cd00464 SK Shikimate kinase (S 95.8 0.021 4.5E-07 55.2 6.6 31 209-249 1-31 (154)
445 COG4650 RtcR Sigma54-dependent 95.8 0.025 5.4E-07 60.9 7.6 137 558-712 169-312 (531)
446 cd01130 VirB11-like_ATPase Typ 95.8 0.011 2.4E-07 59.9 4.8 39 194-232 12-50 (186)
447 COG3829 RocR Transcriptional r 95.8 0.051 1.1E-06 63.2 10.5 131 581-732 247-390 (560)
448 COG1484 DnaC DNA replication p 95.8 0.019 4.1E-07 61.5 6.7 104 604-732 105-208 (254)
449 PRK05537 bifunctional sulfate 95.8 0.062 1.3E-06 64.0 11.6 63 186-254 364-433 (568)
450 cd01124 KaiC KaiC is a circadi 95.8 0.04 8.6E-07 55.0 8.6 25 209-233 1-25 (187)
451 PRK00149 dnaA chromosomal repl 95.8 0.018 4E-07 66.5 7.0 90 603-707 147-238 (450)
452 PRK07261 topology modulation p 95.7 0.019 4.2E-07 57.5 6.3 23 209-231 2-24 (171)
453 COG2204 AtoC Response regulato 95.7 0.0062 1.3E-07 70.0 3.0 57 192-255 146-205 (464)
454 PRK05703 flhF flagellar biosyn 95.7 0.27 5.7E-06 56.7 16.2 68 155-232 167-246 (424)
455 TIGR00064 ftsY signal recognit 95.7 0.067 1.4E-06 57.9 10.7 60 584-646 43-111 (272)
456 PRK06067 flagellar accessory p 95.7 0.092 2E-06 55.0 11.5 77 206-292 24-134 (234)
457 COG4088 Predicted nucleotide k 95.7 0.024 5.2E-07 58.5 6.7 81 210-294 4-89 (261)
458 TIGR02782 TrbB_P P-type conjug 95.7 0.045 9.8E-07 60.0 9.4 84 193-287 118-213 (299)
459 PRK14086 dnaA chromosomal repl 95.7 0.026 5.6E-07 67.1 7.9 112 581-708 291-405 (617)
460 PRK14974 cell division protein 95.7 0.18 3.8E-06 56.3 14.0 160 154-343 70-267 (336)
461 PRK13833 conjugal transfer pro 95.7 0.046 1E-06 60.5 9.4 86 194-288 131-225 (323)
462 KOG1514 Origin recognition com 95.7 0.09 2E-06 62.6 12.1 98 192-293 401-523 (767)
463 COG3604 FhlA Transcriptional r 95.7 0.025 5.5E-07 64.9 7.4 57 192-255 228-287 (550)
464 cd03283 ABC_MutS-like MutS-lik 95.7 0.11 2.4E-06 53.5 11.6 127 206-356 24-162 (199)
465 PRK09862 putative ATP-dependen 95.7 0.0096 2.1E-07 69.6 4.2 37 194-230 197-233 (506)
466 PRK11823 DNA repair protein Ra 95.6 0.11 2.3E-06 60.2 12.7 79 206-293 79-171 (446)
467 PF00437 T2SE: Type II/IV secr 95.6 0.026 5.6E-07 60.4 7.0 43 192-234 112-154 (270)
468 PLN02165 adenylate isopentenyl 95.6 0.012 2.6E-07 65.1 4.5 45 187-231 21-67 (334)
469 KOG0737 AAA+-type ATPase [Post 95.6 0.014 3E-07 64.8 4.8 132 567-732 96-240 (386)
470 TIGR02237 recomb_radB DNA repa 95.6 0.038 8.3E-07 56.6 7.9 78 207-293 12-112 (209)
471 COG1239 ChlI Mg-chelatase subu 95.6 0.11 2.4E-06 58.8 12.0 143 574-731 14-195 (423)
472 TIGR02533 type_II_gspE general 95.6 0.036 7.9E-07 64.7 8.6 100 601-712 239-339 (486)
473 TIGR01618 phage_P_loop phage n 95.6 0.012 2.7E-07 61.6 4.2 78 205-294 10-97 (220)
474 TIGR01818 ntrC nitrogen regula 95.6 0.041 8.8E-07 63.4 8.9 55 192-253 142-196 (463)
475 PRK03839 putative kinase; Prov 95.6 0.011 2.4E-07 59.2 3.8 23 209-231 2-24 (180)
476 cd01129 PulE-GspE PulE/GspE Th 95.5 0.03 6.5E-07 60.3 7.2 28 206-233 79-106 (264)
477 PF06068 TIP49: TIP49 C-termin 95.5 0.028 6.1E-07 62.8 7.0 70 193-274 29-105 (398)
478 cd00227 CPT Chloramphenicol (C 95.5 0.016 3.5E-07 58.0 4.7 25 207-231 2-26 (175)
479 cd02020 CMPK Cytidine monophos 95.5 0.03 6.6E-07 53.4 6.4 22 210-231 2-23 (147)
480 PRK13948 shikimate kinase; Pro 95.5 0.029 6.3E-07 57.1 6.6 34 206-249 9-42 (182)
481 COG1220 HslU ATP-dependent pro 95.5 0.024 5.2E-07 62.2 6.1 56 206-271 49-106 (444)
482 cd02019 NK Nucleoside/nucleoti 95.5 0.043 9.2E-07 46.7 6.5 22 210-231 2-23 (69)
483 PRK12422 chromosomal replicati 95.5 0.029 6.4E-07 64.8 7.2 89 604-707 141-229 (445)
484 PRK04296 thymidine kinase; Pro 95.5 0.067 1.5E-06 54.6 9.1 109 606-721 4-118 (190)
485 PRK13946 shikimate kinase; Pro 95.5 0.026 5.6E-07 57.2 6.0 35 206-250 9-43 (184)
486 TIGR00150 HI0065_YjeE ATPase, 95.4 0.021 4.4E-07 55.4 4.9 40 193-232 5-47 (133)
487 PF00910 RNA_helicase: RNA hel 95.4 0.027 5.9E-07 52.0 5.6 25 210-234 1-25 (107)
488 PF13177 DNA_pol3_delta2: DNA 95.4 0.2 4.4E-06 49.8 12.2 95 195-293 4-117 (162)
489 cd00071 GMPK Guanosine monopho 95.4 0.013 2.8E-07 56.7 3.4 23 210-232 2-24 (137)
490 TIGR01425 SRP54_euk signal rec 95.4 0.092 2E-06 60.3 10.8 87 602-691 98-194 (429)
491 TIGR03499 FlhF flagellar biosy 95.4 0.09 1.9E-06 57.2 10.2 79 604-687 194-280 (282)
492 KOG0726 26S proteasome regulat 95.4 0.034 7.4E-07 59.9 6.6 110 601-734 217-335 (440)
493 PF08433 KTI12: Chromatin asso 95.4 0.043 9.3E-07 59.4 7.6 78 210-294 4-86 (270)
494 PRK05703 flhF flagellar biosyn 95.3 0.15 3.2E-06 58.8 12.3 113 605-731 222-341 (424)
495 PF13671 AAA_33: AAA domain; P 95.3 0.014 2.9E-07 55.8 3.3 22 210-231 2-23 (143)
496 TIGR02538 type_IV_pilB type IV 95.3 0.053 1.2E-06 64.5 9.0 100 601-712 313-413 (564)
497 PRK10365 transcriptional regul 95.3 0.052 1.1E-06 62.0 8.5 88 194-293 146-248 (441)
498 PRK10436 hypothetical protein; 95.3 0.062 1.4E-06 62.4 9.1 100 601-712 215-315 (462)
499 KOG0991 Replication factor C, 95.3 0.056 1.2E-06 56.8 7.7 121 581-733 29-153 (333)
500 KOG0728 26S proteasome regulat 95.3 0.042 9E-07 58.1 6.7 109 601-735 179-298 (404)
No 1
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-123 Score=1082.73 Aligned_cols=592 Identities=19% Similarity=0.267 Sum_probs=485.9
Q ss_pred hccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHhhcCCCChhhHHHHHHHHHHHhccCCCCCCCCC
Q 003769 11 ALTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKALELCFNVALNRLPASTITSP 90 (796)
Q Consensus 11 rfT~~A~~vL~~A~~~Ar~~gh~~VtpeHLLlaLL~~~~g~l~~iL~~~~gi~~~~d~~aL~~~l~~~L~rlp~~~~~~~ 90 (796)
+||++++++|..|+++|++++|.+|+++|||++|+.++.+. .++.. +|+ +. +.++..++..+.++|...+
T Consensus 1 ~~~~~~~~~l~~a~~~a~~~~h~~~~~eHll~~ll~~~~~~--~~l~~-~~~-~~---~~l~~~~~~~~~~~~~~~~--- 70 (786)
T COG0542 1 KLTERAQKALELAQELARMRRHEYVTPEHLLLALLDQPKGD--ELLNL-CGI-DL---DKLRQELEEFIDKLPKVLG--- 70 (786)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHcCCchH--HHHHH-cCC-CH---HHHHHHHHHHHhccCCCCC---
Confidence 59999999999999999999999999999999999999887 88998 998 65 9999999999999886532
Q ss_pred CCCCCCCCCCCcccHHHHHHHHHHHHHHHhccchhhhhhhcccccccccCHHHHHHHHhcCC--hHHHHHHHcCCChHHH
Q 003769 91 LLGPHRHSPRPSLSNALVAAFKRAQAHQRRGSIENQQQQQQQPVLALKIEVEQLVISILDDP--SVSRVMREAGFSSSQV 168 (796)
Q Consensus 91 ~~~~~~~~~~~~~S~~l~~aL~~A~~~a~~~~lg~~~~~~~~~~l~~kI~~eHLLLALL~d~--~~a~vL~~~Gis~~~l 168 (796)
.+.+|+.+.++++.|+.+++. .+++| |+++|||++++.++ .+.++|..+|++...+
T Consensus 71 ---------~~~~s~~~~~~~~~a~~~a~~--~~~~~-----------v~~~~llla~~~~~~~~~~~~l~~~~~~~~~~ 128 (786)
T COG0542 71 ---------SPYLSPRLKRVLERAWLLAQS--LGDEY-----------VSTEHLLLALLNEPESVAAYILKKLGVTRKDV 128 (786)
T ss_pred ---------CCCCCHHHHHHHHHHHHHHHh--ccCcc-----------ccHHHHHHHHhcccchHHHHHHHhccCCHHHH
Confidence 267899999999999999987 68888 99999999999975 4789999999999987
Q ss_pred HHHHHhhccC--CCCCC-------------------CCCCCCCC---ChHHHHHHHHHHhh-ccCceEEEcCCcccHHHH
Q 003769 169 KIKVEENVPL--GICSQ-------------------STNKSLGR---DSDDVMSVLNALIN-KKRNTVIVGGNLAAIEGV 223 (796)
Q Consensus 169 ~~~v~~~v~~--~~~s~-------------------~p~g~ldp---r~~ei~~vi~~L~r-~k~n~vLvGepGvGKTai 223 (796)
.+.+. .++. ..+++ +.+|++|| ||+||+|++++|+| +|||||||||||||||||
T Consensus 129 ~~~~~-~~~~~~~~~~~~~~~~~~~L~~y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAI 207 (786)
T COG0542 129 EELIE-ELRGGNEVDSKNAEEDQDALEKYTRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAI 207 (786)
T ss_pred HHHHH-HHhcccccCCcccccchhhHHHHhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHH
Confidence 55554 3331 11111 12799999 99999999999999 999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCceEEEeecccccc--cchHHHHHHHHHHHHHHHhccCCCEEEEEcchhhhhhhhcccCCCC
Q 003769 224 IRGIIDQFERGQVPGDLRYAQFISLPLFSFRN--QSKGEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGD 301 (796)
Q Consensus 224 v~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a--~~rge~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~ 301 (796)
|+|||+||.+|+||+.|+++++++||+++|++ +||||||+|||.+++++++. + ++||||||+|+|+|+ |++
T Consensus 208 vEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~-~-~vILFIDEiHtiVGA-----G~~ 280 (786)
T COG0542 208 VEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKS-K-NVILFIDEIHTIVGA-----GAT 280 (786)
T ss_pred HHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcC-C-CeEEEEechhhhcCC-----Ccc
Confidence 99999999999999999999999999999999 89999999999999999985 4 999999999999999 776
Q ss_pred ccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccccccceecccCCCCcccccc---c-C
Q 003769 302 EQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTIPVGSLSLSLN---I-D 377 (796)
Q Consensus 302 ~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp~~~l~~sl~---~-~ 377 (796)
+| . +||++|+ |||.| +||+|+||||||++||+|||+||+||+||| |+|.|.+|+...++. + .
T Consensus 281 ~G------~-a~DAaNi-LKPaL----ARGeL~~IGATT~~EYRk~iEKD~AL~RRF--Q~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 281 EG------G-AMDAANL-LKPAL----ARGELRCIGATTLDEYRKYIEKDAALERRF--QKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred cc------c-ccchhhh-hHHHH----hcCCeEEEEeccHHHHHHHhhhchHHHhcC--ceeeCCCCCHHHHHHHHHHHH
Confidence 65 1 6999999 99766 499999999999999999999999999996 788887777666532 1 2
Q ss_pred CCCCCccceEeccchhcccccCCCccccchhhcchhhhhhhhhccccchhhhhHHHHhhhhhhHhHHHHhcC------Cc
Q 003769 378 SDSPPTHQFITTNKVQRDGLISWPLLESGAEHLNHLNCSSNVSVNYFNREGQSMATSIIHKKKSAVAVAKST------LP 451 (796)
Q Consensus 378 s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~e~~~l~~~~~~~~~~~~~~~~~~------lp 451 (796)
..++.||+|.+++. ++.+|+..|.+|..+ ..+|+|+++++|++.+. .|
T Consensus 347 ~~yE~hH~V~i~D~--------------------Al~aAv~LS~RYI~d------R~LPDKAIDLiDeA~a~~~l~~~~p 400 (786)
T COG0542 347 ERYEAHHGVRITDE--------------------ALVAAVTLSDRYIPD------RFLPDKAIDLLDEAGARVRLEIDKP 400 (786)
T ss_pred HHHHHccCceecHH--------------------HHHHHHHHHHhhccc------CCCCchHHHHHHHHHHHHHhcccCC
Confidence 23488999997642 344778889999863 24799999999887642 35
Q ss_pred hHHHhhHHHHHhhhhhhhHHHHHH-------HHHHhhccccccccCCCCCCcccchhHhhhccccccccccccccccccc
Q 003769 452 SWLQQYKEESRRNSNMINDNQDLC-------EKWNSFGNKQTHFSSSSPSSISVSSQECKQLLPKEHQFWVCEGYESSLR 524 (796)
Q Consensus 452 ~~l~~~~~~~~~~~~~~~~~~~L~-------~kw~~~~~~~l~~~s~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (796)
..++....+ ...+..+...+. ++....-. .+.- ..+...+.. .... ..+..++++.
T Consensus 401 ~~l~~~~~~---~~~l~~e~~~~~~e~~~~~k~~~~~~~-~~~~-------~~~~~~~~~-----~~~~-v~~~~Ia~vv 463 (786)
T COG0542 401 EELDELERE---LAQLEIEKEALEREQDEKEKKLIDEII-KLKE-------GRIPELEKE-----LEAE-VDEDDIAEVV 463 (786)
T ss_pred cchhHHHHH---HHHHHHHHHHHhhhhhHHHHHHHHHHH-HHhh-------hhhhhHHHH-----Hhhc-cCHHHHHHHH
Confidence 444332211 000000000110 00000000 0000 000000000 0000 1111223455
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHhhc----
Q 003769 525 SNHHPKPDLLSNPNSSPNSASSSEAAEEDSDCLNSFNKFTDENLKVLSDALERKAVVPWQKEIMPEIARTILECRS---- 600 (796)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~rs---- 600 (796)
+.|+++| +.++.+.+.++|++|++.|+++ |+||++||.+|+++|+++|+
T Consensus 464 ~~~TgIP-------------------------v~~l~~~e~~kll~le~~L~~r--ViGQd~AV~avs~aIrraRaGL~d 516 (786)
T COG0542 464 ARWTGIP-------------------------VAKLLEDEKEKLLNLERRLKKR--VIGQDEAVEAVSDAIRRARAGLGD 516 (786)
T ss_pred HHHHCCC-------------------------hhhhchhhHHHHHHHHHHHhcc--eeChHHHHHHHHHHHHHHhcCCCC
Confidence 6666554 2467788899999999999999 99999999999999999999
Q ss_pred -cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCC-CCCCCCCchhhHHHHHHhC
Q 003769 601 -KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD-VELGCCSYIERLGLALNEN 678 (796)
Q Consensus 601 -~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~-~~~~~~~~~~~L~eavr~~ 678 (796)
+||+|||||+|||| ||||||||+||++|||++ .+||||||||| ||+|+++|++|+ |||+|++..|+|||+||+|
T Consensus 517 p~rPigsFlF~GPTG--VGKTELAkaLA~~Lfg~e-~aliR~DMSEy-~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~ 592 (786)
T COG0542 517 PNRPIGSFLFLGPTG--VGKTELAKALAEALFGDE-QALIRIDMSEY-MEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRK 592 (786)
T ss_pred CCCCceEEEeeCCCc--ccHHHHHHHHHHHhcCCC-ccceeechHHH-HHHHHHHHHhCCCCCCceeccccchhHhhhcC
Confidence 89999999999999 999999999999999999 99999999999 999999999996 7999999899999999999
Q ss_pred CCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCCC
Q 003769 679 PHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDSL 733 (796)
Q Consensus 679 P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~~ 733 (796)
||||||||||||| || +|+|+|||+||+|+|||++||+|||+|||||||||..
T Consensus 593 PySViLlDEIEKA--Hp-dV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~G 644 (786)
T COG0542 593 PYSVILLDEIEKA--HP-DVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAG 644 (786)
T ss_pred CCeEEEechhhhc--CH-HHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccc
Confidence 9999999999999 99 9999999999999999999999999999999999964
No 2
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-117 Score=1040.89 Aligned_cols=658 Identities=35% Similarity=0.536 Sum_probs=508.7
Q ss_pred CCCccccchhhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHhhcCCCChhhHHHHHHHHHHHhc
Q 003769 1 MRAGLCAVPQALTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKALELCFNVALN 80 (796)
Q Consensus 1 mr~~~~~~~erfT~~A~~vL~~A~~~Ar~~gh~~VtpeHLLlaLL~~~~g~l~~iL~~~~gi~~~~d~~aL~~~l~~~L~ 80 (796)
||+|+|++++.||++|+.+|..|+.+|+++||++|||+|++.+||.+++|+++++|.+ ++ ++||.+++.|+++.|+
T Consensus 1 m~t~~~t~~q~lT~~Aa~~L~~a~~~Arrrgh~qvtplH~~~~LLs~~t~~lr~ac~~-~~---~l~~ralelc~~v~l~ 76 (898)
T KOG1051|consen 1 MRTGVYTVQQTLTEEAATVLKQAVTEARRRGHAQVTPLHVASTLLSSPTGILRRACIK-SH---PLQCRALELCFNVSLN 76 (898)
T ss_pred CCCcccchHhhhCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHcCCchHHHHHHHh-cC---cccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 65 2678999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHhccchhhhhhhcccccccccCHHHHHHHHhcCChHHHHHHH
Q 003769 81 RLPASTITSPLLGPHRHSPRPSLSNALVAAFKRAQAHQRRGSIENQQQQQQQPVLALKIEVEQLVISILDDPSVSRVMRE 160 (796)
Q Consensus 81 rlp~~~~~~~~~~~~~~~~~~~~S~~l~~aL~~A~~~a~~~~lg~~~~~~~~~~l~~kI~~eHLLLALL~d~~~a~vL~~ 160 (796)
|+|++. .|+.++.+..+|++++++|++++ -++ ++. +|||+.++|++++++||+++++|++
T Consensus 77 rlpt~~-------------~p~~sn~l~aalkr~qa~qrr~~--~~~---~~~--~vkvE~~~li~silDdp~vsrv~re 136 (898)
T KOG1051|consen 77 RLPTSY-------------GPPVSNALMAALKRAQAHQRRGC--EEQ---QQQ--AVKVELEQLILSILDDPSVSRVMRE 136 (898)
T ss_pred hccCCC-------------CCccchHhHHHHHHHHHHHHhcc--hhh---ccc--hhhHhHHhhheeeecCchHHHHHHH
Confidence 999753 37899999999999999999843 222 122 7888888899999999999999999
Q ss_pred cCCChHHHHHHHHhhccC-CCCC----------------CCC---CCCCCC---C-hHHHHHHHHHHhh-ccCceEEEcC
Q 003769 161 AGFSSSQVKIKVEENVPL-GICS----------------QST---NKSLGR---D-SDDVMSVLNALIN-KKRNTVIVGG 215 (796)
Q Consensus 161 ~Gis~~~l~~~v~~~v~~-~~~s----------------~~p---~g~ldp---r-~~ei~~vi~~L~r-~k~n~vLvGe 215 (796)
+|+++.+++..|++.+.. +..+ .+| +|++|| | ++||+|++++|+| +||||||||+
T Consensus 137 ag~~s~~vK~~ve~~~g~~~~~~~~~~~~~~~L~~~~~dl~p~a~~gkldPvigr~deeirRvi~iL~Rrtk~NPvLVG~ 216 (898)
T KOG1051|consen 137 AGFSSSAVKSAVEQPVGQFRSPSRGPLWPLLFLENYGTDLTPRARQGKLDPVIGRHDEEIRRVIEILSRKTKNNPVLVGE 216 (898)
T ss_pred hcCChHHHHHHHHhhccccCCCCcCCccchhHHHhcccccChhhhccCCCCccCCchHHHHHHHHHHhccCCCCceEEec
Confidence 999999999999976641 1111 112 588999 6 9999999999999 9999999999
Q ss_pred CcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc--cchHHHHHHHHHHHHHHHhccCCCEEEEEcchhhhhhh
Q 003769 216 NLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN--QSKGEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 216 pGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a--~~rge~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~ 293 (796)
||+|||++|+++|+||.+|+||..|+++++++||++++++ +||||||+|+++++++|+.. ++++|||||||||++++
T Consensus 217 ~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~-~~gvILfigelh~lvg~ 295 (898)
T KOG1051|consen 217 PGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESG-GGGVILFLGELHWLVGS 295 (898)
T ss_pred CCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcC-CCcEEEEecceeeeecC
Confidence 9999999999999999999999999999999999998887 89999999999999999964 78999999999999987
Q ss_pred hcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccccccceecccCCCCc-cc
Q 003769 294 WANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTIPVGSL-SL 372 (796)
Q Consensus 294 ~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp~~~l-~~ 372 (796)
|+. |+++|++|+ ||+++ .+|.||||||||++||+|||++||||||||++|.|++|+.+- ..
T Consensus 296 -----g~~--------~~~~d~~nl-Lkp~L----~rg~l~~IGatT~e~Y~k~iekdPalErrw~l~~v~~pS~~~~~~ 357 (898)
T KOG1051|consen 296 -----GSN--------YGAIDAANL-LKPLL----ARGGLWCIGATTLETYRKCIEKDPALERRWQLVLVPIPSVENLSL 357 (898)
T ss_pred -----CCc--------chHHHHHHh-hHHHH----hcCCeEEEecccHHHHHHHHhhCcchhhCcceeEeccCcccchhh
Confidence 544 349999999 99888 488899999999999999999999999999999999998542 22
Q ss_pred ccccC-CCCCCccceEeccchhcccccCCCccccchhhcchhhhhhhhhccccchhhhhHHHHhhhhhhHhHHHHhcCCc
Q 003769 373 SLNID-SDSPPTHQFITTNKVQRDGLISWPLLESGAEHLNHLNCSSNVSVNYFNREGQSMATSIIHKKKSAVAVAKSTLP 451 (796)
Q Consensus 373 sl~~~-s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~e~~~l~~~~~~~~~~~~~~~~~~lp 451 (796)
.|... ..++-|||+.+++.+.+.+. .+... ...+.||.+|+..|+. |+... +..+...+|
T Consensus 358 iL~~l~~~~e~~hg~~~s~~a~~~a~----~~s~~---~~t~r~lpd~aidl~d-Ea~a~-----------~~~~~~~lP 418 (898)
T KOG1051|consen 358 ILPGLSERYEVHHGVRISDESLFSAA----QLSAR---YITLSFLPDCAIDLED-EAAAL-----------VKSQAESLP 418 (898)
T ss_pred hhhhhhhhhccccCCccccccccccc----chhhh---hcccCcCchhcccHHH-HHHHH-----------HhhhhhhCC
Confidence 23221 12478899998876554431 11111 3345699999988864 33211 122335899
Q ss_pred hHHHhhHHHHHhhhhhhhHHHHHHHHHHhhccccccccCCCC--C-C-cccchhHhh-hc--ccccccccccccc-ccc-
Q 003769 452 SWLQQYKEESRRNSNMINDNQDLCEKWNSFGNKQTHFSSSSP--S-S-ISVSSQECK-QL--LPKEHQFWVCEGY-ESS- 522 (796)
Q Consensus 452 ~~l~~~~~~~~~~~~~~~~~~~L~~kw~~~~~~~l~~~s~~~--~-~-~s~s~~~~~-~~--~~~~~~~~~~~~~-~~~- 522 (796)
+|||++...+. .+..++..|+++|+..-...+++....+ + . +.-.+++.. .. ..+.-+.+..... .++
T Consensus 419 ~wL~~~~~~~~---~~~~e~~~L~kk~d~~~h~r~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~~~~~~~~~~~~~~k~ 495 (898)
T KOG1051|consen 419 PWLQNLERVDI---KLQDEISELQKKWNQALHKRPSLESLAPSKPTQQPLSASVDSERSVIEELKLKKNSLDRNSLLAKA 495 (898)
T ss_pred HHHHhhhhhhh---hhHHHHHHHHHhhhhhhccccccccccccccccccchhhhccchhHHhhhccccCCcccchhhhcc
Confidence 99999865311 2345788999999932221121211000 0 0 000001000 00 0000001110000 000
Q ss_pred cccCCCCCC-CCC--CCCC-CCCCCCCCCcccccccc-c--------ccccccccHHHHHHHHHHhhcCCCCCCcchHHH
Q 003769 523 LRSNHHPKP-DLL--SNPN-SSPNSASSSEAAEEDSD-C--------LNSFNKFTDENLKVLSDALERKAVVPWQKEIMP 589 (796)
Q Consensus 523 ~~~~~~~~~-~~~--~~~~-~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~e~L~~l~~~L~~~~~v~gQ~~av~ 589 (796)
.+..-.... +.- ..|. .+. .+..+..++.++. . +.++++.+.++|+.|++.|+++ |+||++||+
T Consensus 496 ~r~~d~~~~~~l~~~~~p~~~~~-~~~~~~~~~~~i~~~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~--V~gQ~eAv~ 572 (898)
T KOG1051|consen 496 HRPNDYTRETDLRYGRIPDELSE-KSNDNQGGESDISEVVSRWTGIPVDRLAEAEAERLKKLEERLHER--VIGQDEAVA 572 (898)
T ss_pred cCCCCcchhhhccccccchhhhh-hcccccCCccchhhhhhhhcCCchhhhhhhHHHHHHHHHHHHHhh--ccchHHHHH
Confidence 000000000 000 0000 000 0000000111111 1 2344455678999999999999 999999999
Q ss_pred HHHHHHHHhhc--c--CCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCC-CCCCC
Q 003769 590 EIARTILECRS--K--KEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD-VELGC 664 (796)
Q Consensus 590 ~ia~~i~~~rs--~--~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~-~~~~~ 664 (796)
+||.+|++||+ . +|++||||+|||| ||||+|||+||++|||++ ++|||||||+| ++ ++|++++ |||+|
T Consensus 573 aIa~AI~~sr~gl~~~~~~awflflGpdg--vGKt~lAkaLA~~~Fgse-~~~IriDmse~-~e---vskligsp~gyvG 645 (898)
T KOG1051|consen 573 AIAAAIRRSRAGLKDPNPDAWFLFLGPDG--VGKTELAKALAEYVFGSE-ENFIRLDMSEF-QE---VSKLIGSPPGYVG 645 (898)
T ss_pred HHHHHHHhhhcccCCCCCCeEEEEECCCc--hhHHHHHHHHHHHHcCCc-cceEEechhhh-hh---hhhccCCCccccc
Confidence 99999999997 3 3899999999999 999999999999999999 99999999999 56 7899986 68999
Q ss_pred CCchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCCCCCC
Q 003769 665 CSYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDSLDSV 736 (796)
Q Consensus 665 ~~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~~~~~ 736 (796)
+..+|+|||+||++||+|||||||||| || +|+|.|+|++|+||+||++||+|||+|||||||||.+.+.
T Consensus 646 ~e~gg~LteavrrrP~sVVLfdeIEkA--h~-~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~~~ 714 (898)
T KOG1051|consen 646 KEEGGQLTEAVKRRPYSVVLFEEIEKA--HP-DVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGSSA 714 (898)
T ss_pred chhHHHHHHHHhcCCceEEEEechhhc--CH-HHHHHHHHHHhcCccccCCCcEeeccceEEEEecccchHh
Confidence 999999999999999999999999999 99 9999999999999999999999999999999999986443
No 3
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=5.7e-91 Score=841.34 Aligned_cols=591 Identities=17% Similarity=0.250 Sum_probs=464.7
Q ss_pred chhhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHhhcCCCChhhHHHHHHHHHHHhccCCCCCC
Q 003769 8 VPQALTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKALELCFNVALNRLPASTI 87 (796)
Q Consensus 8 ~~erfT~~A~~vL~~A~~~Ar~~gh~~VtpeHLLlaLL~~~~g~l~~iL~~~~gi~~~~d~~aL~~~l~~~L~rlp~~~~ 87 (796)
|+++||++++++|..|+++|++++|++|+|+|||+|||.++.|.+.++|.. +|+ +. +.++..++..+.+.+...
T Consensus 1 m~~rfT~~a~~vL~~A~~~A~~~~h~~V~~EHLLLaLL~~~~~~a~~iL~~-~gi-d~---~~l~~~l~~~l~~~~~~~- 74 (821)
T CHL00095 1 MFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAARALKS-MGV-TL---KDARIEVEKIIGRGTGFV- 74 (821)
T ss_pred ChhhHhHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHhCCCchHHHHHHH-cCC-CH---HHHHHHHHHHHhcCCCCC-
Confidence 678999999999999999999999999999999999999999999999999 999 76 889999988887643211
Q ss_pred CCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHhccchhhhhhhcccccccccCHHHHHHHHhcCC--hHHHHHHHcCCCh
Q 003769 88 TSPLLGPHRHSPRPSLSNALVAAFKRAQAHQRRGSIENQQQQQQQPVLALKIEVEQLVISILDDP--SVSRVMREAGFSS 165 (796)
Q Consensus 88 ~~~~~~~~~~~~~~~~S~~l~~aL~~A~~~a~~~~lg~~~~~~~~~~l~~kI~~eHLLLALL~d~--~~a~vL~~~Gis~ 165 (796)
.. .++||+.++++|..|+.+|.. +++++ |+++|||+||++++ .+.++|+.+|++.
T Consensus 75 ------~~----~~~~S~~~~~vL~~A~~~A~~--~~~~~-----------I~~eHLLlALL~~~ds~a~~iL~~~gvd~ 131 (821)
T CHL00095 75 ------AV----EIPFTPRAKRVLEMSLEEARD--LGHNY-----------IGTEHLLLALLEEGEGVAARVLENLGVDL 131 (821)
T ss_pred ------cc----ccccCHHHHHHHHHHHHHHHH--hCCCc-----------ccHHHHHHHHHhCCCchHHHHHHHcCCCH
Confidence 11 588999999999999999987 78887 99999999999974 3578999999999
Q ss_pred HHHHHHHHhhccCC---CC------CCCC--------------CCCCCC---ChHHHHHHHHHHhh-ccCceEEEcCCcc
Q 003769 166 SQVKIKVEENVPLG---IC------SQST--------------NKSLGR---DSDDVMSVLNALIN-KKRNTVIVGGNLA 218 (796)
Q Consensus 166 ~~l~~~v~~~v~~~---~~------s~~p--------------~g~ldp---r~~ei~~vi~~L~r-~k~n~vLvGepGv 218 (796)
..++..+.+.+... .. +..| +|++|| |++||++++++|+| +++||+|+|||||
T Consensus 132 ~~L~~~l~~~l~~~~e~~~~~~~~~~~~~~l~~~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGv 211 (821)
T CHL00095 132 SKIRSLILNLIGEIIEAILGAEQSRSKTPTLEEFGTNLTKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGV 211 (821)
T ss_pred HHHHHHHHHHhccccccccccccccccchHHHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCC
Confidence 99988876443211 10 0111 688999 99999999999999 9999999999999
Q ss_pred cHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc--cchHHHHHHHHHHHHHHHhccCCCEEEEEcchhhhhhhhcc
Q 003769 219 AIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN--QSKGEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWAN 296 (796)
Q Consensus 219 GKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a--~~rge~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~ 296 (796)
|||++|++||++|.+++||..|++++|+++|++++++ +|+||||+|+++++++++. .+++||||||+|+|+++
T Consensus 212 GKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~--~~~~ILfiDEih~l~~~--- 286 (821)
T CHL00095 212 GKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQE--NNNIILVIDEVHTLIGA--- 286 (821)
T ss_pred CHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHh--cCCeEEEEecHHHHhcC---
Confidence 9999999999999999999999999999999999986 8999999999999999986 56899999999999987
Q ss_pred cCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccccccceecccCCCCcccc--c
Q 003769 297 YYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTIPVGSLSLS--L 374 (796)
Q Consensus 297 ~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp~~~l~~s--l 374 (796)
|+++| .+|++|+ ||+.+ ++|+|+||||||+++|++|+++||+|.+||+ +|.+++++.... +
T Consensus 287 --g~~~g--------~~~~a~l-Lkp~l----~rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~--~I~v~ep~~~e~~aI 349 (821)
T CHL00095 287 --GAAEG--------AIDAANI-LKPAL----ARGELQCIGATTLDEYRKHIEKDPALERRFQ--PVYVGEPSVEETIEI 349 (821)
T ss_pred --CCCCC--------cccHHHH-hHHHH----hCCCcEEEEeCCHHHHHHHHhcCHHHHhcce--EEecCCCCHHHHHHH
Confidence 55554 5689999 99777 4999999999999999999999999999975 555555443322 1
Q ss_pred -c-cCCCCCCccceEeccchhcccccCCCccccchhhcchhhhhhhhhccccchhhhhHHHHhhhhhhHhHHHHhc----
Q 003769 375 -N-IDSDSPPTHQFITTNKVQRDGLISWPLLESGAEHLNHLNCSSNVSVNYFNREGQSMATSIIHKKKSAVAVAKS---- 448 (796)
Q Consensus 375 -~-~~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~e~~~l~~~~~~~~~~~~~~~~~---- 448 (796)
. ....++.+|++.+++ ..+..+...+.+|..+ ..+|+|+++++|++.+
T Consensus 350 Lr~l~~~~e~~~~v~i~d--------------------eal~~i~~ls~~yi~~------r~lPdkaidlld~a~a~~~~ 403 (821)
T CHL00095 350 LFGLRSRYEKHHNLSISD--------------------KALEAAAKLSDQYIAD------RFLPDKAIDLLDEAGSRVRL 403 (821)
T ss_pred HHHHHHHHHHHcCCCCCH--------------------HHHHHHHHHhhccCcc------ccCchHHHHHHHHHHHHHHh
Confidence 1 001113455544321 1223455666777643 2357778887776653
Q ss_pred ---CCchHHHhhHHH------HHh-----------------hhhhhhHHHHHHHHHHhhccccccccCCCCCCcccchhH
Q 003769 449 ---TLPSWLQQYKEE------SRR-----------------NSNMINDNQDLCEKWNSFGNKQTHFSSSSPSSISVSSQE 502 (796)
Q Consensus 449 ---~lp~~l~~~~~~------~~~-----------------~~~~~~~~~~L~~kw~~~~~~~l~~~s~~~~~~s~s~~~ 502 (796)
..|..+...... ++. ...+..++..+...|...... +
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-------- 466 (821)
T CHL00095 404 INSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKKTEEEK---------R-------- 466 (821)
T ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---------c--------
Confidence 234332221100 000 000111111222222211000 0
Q ss_pred hhhccccccccccccccccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccHHHHHHHHHHhhcCCCCC
Q 003769 503 CKQLLPKEHQFWVCEGYESSLRSNHHPKPDLLSNPNSSPNSASSSEAAEEDSDCLNSFNKFTDENLKVLSDALERKAVVP 582 (796)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~l~~~L~~~~~v~ 582 (796)
......-..+..++.+.|+++| +.++.+.+.++|.+|++.|+++ |+
T Consensus 467 -------~~~~~v~~~~i~~~~~~~tgip-------------------------~~~~~~~~~~~l~~l~~~L~~~--v~ 512 (821)
T CHL00095 467 -------LEVPVVTEEDIAEIVSAWTGIP-------------------------VNKLTKSESEKLLHMEETLHKR--II 512 (821)
T ss_pred -------ccCCccCHHHHHHHHHHHHCCC-------------------------chhhchhHHHHHHHHHHHhcCc--Cc
Confidence 0000000011122333333332 2455567788999999999999 99
Q ss_pred CcchHHHHHHHHHHHhhc-----cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccC
Q 003769 583 WQKEIMPEIARTILECRS-----KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRS 657 (796)
Q Consensus 583 gQ~~av~~ia~~i~~~rs-----~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~ 657 (796)
||++||..|+.+|.++|+ +||.+||||+||+| ||||+||++||+.+||+. .+|+++||++| ++.|++++++
T Consensus 513 GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~G--vGKt~lA~~LA~~l~~~~-~~~~~~d~s~~-~~~~~~~~l~ 588 (821)
T CHL00095 513 GQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTG--VGKTELTKALASYFFGSE-DAMIRLDMSEY-MEKHTVSKLI 588 (821)
T ss_pred ChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCC--CcHHHHHHHHHHHhcCCc-cceEEEEchhc-cccccHHHhc
Confidence 999999999999999988 68999999999999 999999999999999998 99999999999 7889999999
Q ss_pred CC-CCCCCCCchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCCC
Q 003769 658 RD-VELGCCSYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDSL 733 (796)
Q Consensus 658 ~~-~~~~~~~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~~ 733 (796)
|+ |||.|++..++|+++++++||+|||||||||| || ++++.|+|+||+|+++|+.|++|||+|||||||||.+
T Consensus 589 g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka--~~-~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g 662 (821)
T CHL00095 589 GSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA--HP-DIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLG 662 (821)
T ss_pred CCCCcccCcCccchHHHHHHhCCCeEEEECChhhC--CH-HHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcc
Confidence 86 68888877789999999999999999999999 99 9999999999999999999999999999999999964
No 4
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=1.2e-89 Score=827.70 Aligned_cols=612 Identities=17% Similarity=0.256 Sum_probs=463.4
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHhhcCCCChhhHHHHHHHHHHHhccCCCCCCCCCC
Q 003769 12 LTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKALELCFNVALNRLPASTITSPL 91 (796)
Q Consensus 12 fT~~A~~vL~~A~~~Ar~~gh~~VtpeHLLlaLL~~~~g~l~~iL~~~~gi~~~~d~~aL~~~l~~~L~rlp~~~~~~~~ 91 (796)
||+.++++|..|+++|++++|++|+|+|||+|||.++++.+..+|.. +|+ ++ +.|+..++.++.+.|...+
T Consensus 1 Lt~~a~~~L~~A~~~A~~~~h~~I~~eHLLlaLL~~~~~~~~~iL~~-~Gv-d~---~~Lr~~le~~l~~~p~~~~---- 71 (852)
T TIGR03345 1 LNPTSRRALEQAAALCVARGHPEVELEHWLLALLDQPDSDLAAILRH-FGV-DL---GRLKADLARALDKLPRGNT---- 71 (852)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhccCcHHHHHHHH-cCC-CH---HHHHHHHHHHhccCCCCCC----
Confidence 68999999999999999999999999999999999988999999999 999 76 8999999999887664211
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHHHH-HHhccchhhhhhhcccccccccCHHHHHHHHhcCCh----HHHHHHHc-CCCh
Q 003769 92 LGPHRHSPRPSLSNALVAAFKRAQAH-QRRGSIENQQQQQQQPVLALKIEVEQLVISILDDPS----VSRVMREA-GFSS 165 (796)
Q Consensus 92 ~~~~~~~~~~~~S~~l~~aL~~A~~~-a~~~~lg~~~~~~~~~~l~~kI~~eHLLLALL~d~~----~a~vL~~~-Gis~ 165 (796)
. .+++|+.++++|+.|+.+ +.. +|++| |+++|||+||++++. +..++..+ |++.
T Consensus 72 ---~----~~~~S~~l~~vL~~A~~~~a~~--~g~~~-----------I~teHLLlALl~e~~~~~~~~~~~~~~~~~~~ 131 (852)
T TIGR03345 72 ---R----TPVFSPHLVELLQEAWLLASLE--LGDGR-----------IRSGHLLLALLTDPELRRLLGSISPELAKIDR 131 (852)
T ss_pred ---C----CCCcCHHHHHHHHHHHHHHHHH--cCCCc-----------ccHHHHHHHHHccccchhHHHHHHHHHhCCCH
Confidence 1 578999999999999974 433 67887 999999999999742 35578887 9999
Q ss_pred HHHHHHHHhhcc--C-CC-----------C---CCC--------------CCCCCCC---ChHHHHHHHHHHhh-ccCce
Q 003769 166 SQVKIKVEENVP--L-GI-----------C---SQS--------------TNKSLGR---DSDDVMSVLNALIN-KKRNT 210 (796)
Q Consensus 166 ~~l~~~v~~~v~--~-~~-----------~---s~~--------------p~g~ldp---r~~ei~~vi~~L~r-~k~n~ 210 (796)
+.+++.+.+... . .. . ... ..|++|| |++||++++++|+| +++||
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~ 211 (852)
T TIGR03345 132 EALREALPALVEGSAEASAAAADAGPAAAAAGAAGTSALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNP 211 (852)
T ss_pred HHHHHHHHHHhcCCccccccccccccccccccccchhhHHHHhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCce
Confidence 999887753211 0 00 0 000 1588999 99999999999999 99999
Q ss_pred EEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc--cchHHHHHHHHHHHHHHHhccCCCEEEEEcchh
Q 003769 211 VIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN--QSKGEVEQKLVELSCHVKSYMGRGIVLYLGDLK 288 (796)
Q Consensus 211 vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a--~~rge~E~rl~~l~~~v~~~~~~~~ILfIDElh 288 (796)
||+||||||||++|++||++|..++||..|.+.++++++++++.+ +|+|+||++|++++++++.. ++++||||||+|
T Consensus 212 lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~-~~~~ILfIDEih 290 (852)
T TIGR03345 212 ILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKAS-PQPIILFIDEAH 290 (852)
T ss_pred eEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhc-CCCeEEEEeChH
Confidence 999999999999999999999999999999999999999999986 79999999999999999864 678999999999
Q ss_pred hhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccccccceecccCCC
Q 003769 289 WVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTIPVG 368 (796)
Q Consensus 289 ~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp~~ 368 (796)
+|+++ |++.| .+|++|+ ||+.+ ++|+|.||||||++||++|+++||||.||| |.|.|++|
T Consensus 291 ~l~~~-----g~~~~--------~~d~~n~-Lkp~l----~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf--~~i~v~ep 350 (852)
T TIGR03345 291 TLIGA-----GGQAG--------QGDAANL-LKPAL----ARGELRTIAATTWAEYKKYFEKDPALTRRF--QVVKVEEP 350 (852)
T ss_pred HhccC-----CCccc--------cccHHHH-hhHHh----hCCCeEEEEecCHHHHhhhhhccHHHHHhC--eEEEeCCC
Confidence 99998 55444 5688999 99877 599999999999999999999999999998 56666666
Q ss_pred Ccccccc----cCCCCCCccceEeccchhcccccCCCccccchhhcchhhhhhhhhccccchhhhhHHHHhhhhhhHhHH
Q 003769 369 SLSLSLN----IDSDSPPTHQFITTNKVQRDGLISWPLLESGAEHLNHLNCSSNVSVNYFNREGQSMATSIIHKKKSAVA 444 (796)
Q Consensus 369 ~l~~sl~----~~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~e~~~l~~~~~~~~~~~~~ 444 (796)
+...++. ....++.+|++.+++.+ +..+...+.+|..+ ..+|+|+++++|
T Consensus 351 s~~~~~~iL~~~~~~~e~~~~v~i~d~a--------------------l~~~~~ls~ryi~~------r~LPDKAIdlld 404 (852)
T TIGR03345 351 DEETAIRMLRGLAPVLEKHHGVLILDEA--------------------VVAAVELSHRYIPG------RQLPDKAVSLLD 404 (852)
T ss_pred CHHHHHHHHHHHHHhhhhcCCCeeCHHH--------------------HHHHHHHccccccc------ccCccHHHHHHH
Confidence 5443321 12223567888776522 22344445555432 124566666555
Q ss_pred HHhc-------CCchHHHhhHH-------H---------------------HHhhhhhhhHHHHHHHHHHhhcccc--c-
Q 003769 445 VAKS-------TLPSWLQQYKE-------E---------------------SRRNSNMINDNQDLCEKWNSFGNKQ--T- 486 (796)
Q Consensus 445 ~~~~-------~lp~~l~~~~~-------~---------------------~~~~~~~~~~~~~L~~kw~~~~~~~--l- 486 (796)
++.. +.|..+..... + ......+..++..+..+|...+... +
T Consensus 405 ea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (852)
T TIGR03345 405 TACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKELVEAIL 484 (852)
T ss_pred HHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5431 12221111000 0 0001122334455666675432210 0
Q ss_pred --cccCCCCCCcccchhHh-hhccccccc-------------cccccccccccccCCCCCCCCCCCCCCCCCCCCCCccc
Q 003769 487 --HFSSSSPSSISVSSQEC-KQLLPKEHQ-------------FWVCEGYESSLRSNHHPKPDLLSNPNSSPNSASSSEAA 550 (796)
Q Consensus 487 --~~~s~~~~~~s~s~~~~-~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (796)
...............+. ...++...+ .+.-...++++.+.|++
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tg--------------------- 543 (852)
T TIGR03345 485 ALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTG--------------------- 543 (852)
T ss_pred HHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHHHHC---------------------
Confidence 00000000000000000 000000000 00000011122222222
Q ss_pred ccccccccccccccHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHhhc-----cCCCeEEEEecCCCCCchHHHHHHH
Q 003769 551 EEDSDCLNSFNKFTDENLKVLSDALERKAVVPWQKEIMPEIARTILECRS-----KKEQTWLLFLGADDHNHGKEKIARE 625 (796)
Q Consensus 551 ~~~~~~~~~~~~~~~e~L~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~rs-----~~~~~~~lf~Gp~g~~vGKt~lAk~ 625 (796)
+| +.++...+.++|.+|++.|+++ |+||++||..|+++|+++|+ .||.+||||+||+| ||||++|++
T Consensus 544 -ip---~~~~~~~e~~~l~~l~~~L~~~--v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~G--vGKT~lA~~ 615 (852)
T TIGR03345 544 -IP---VGRMVRDEIEAVLSLPDRLAER--VIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSG--VGKTETALA 615 (852)
T ss_pred -CC---chhhchhHHHHHHHHHHHhcCe--EcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCC--CCHHHHHHH
Confidence 22 2455566788999999999999 99999999999999999988 68999999999999 999999999
Q ss_pred HHHHHcCCCCCceEEecCCCCccccccccccCCC-CCCCCCCchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHH
Q 003769 626 IAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD-VELGCCSYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQ 704 (796)
Q Consensus 626 LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~-~~~~~~~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q 704 (796)
||+.+||+. ..|+++|||+| ++.|++++++|+ |||.|++..|.|+++|+++||+|||||||||| || +++++|+|
T Consensus 616 La~~l~~~~-~~~~~~dmse~-~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka--~~-~v~~~Llq 690 (852)
T TIGR03345 616 LAELLYGGE-QNLITINMSEF-QEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKA--HP-DVLELFYQ 690 (852)
T ss_pred HHHHHhCCC-cceEEEeHHHh-hhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhc--CH-HHHHHHHH
Confidence 999999998 99999999999 789999999996 68888877789999999999999999999999 99 99999999
Q ss_pred HHHcceEecCCCceecCCcEEEEeeCCCC
Q 003769 705 AIENGCIALADGEIVPLKDSIIIFSCDSL 733 (796)
Q Consensus 705 ~~d~G~l~d~~G~~v~~~n~IiilTsn~~ 733 (796)
+||+|+++|+.|++|||+|||||||||.+
T Consensus 691 ~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg 719 (852)
T TIGR03345 691 VFDKGVMEDGEGREIDFKNTVILLTSNAG 719 (852)
T ss_pred HhhcceeecCCCcEEeccccEEEEeCCCc
Confidence 99999999999999999999999999974
No 5
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=3.4e-84 Score=784.56 Aligned_cols=631 Identities=17% Similarity=0.271 Sum_probs=465.5
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHhhcCCCChhhHHHHHHHHHHHhccCCCCCCCCCC
Q 003769 12 LTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKALELCFNVALNRLPASTITSPL 91 (796)
Q Consensus 12 fT~~A~~vL~~A~~~Ar~~gh~~VtpeHLLlaLL~~~~g~l~~iL~~~~gi~~~~d~~aL~~~l~~~L~rlp~~~~~~~~ 91 (796)
||+.++++|..|+.+|++++|++|+|+|||+||+.+++|.+.++|++ +|+ ++ +.++..++..+++.|...+.
T Consensus 1 fT~~a~~vL~~A~~~A~~~~h~~V~~EHLLlaLl~~~~g~a~~iL~~-~Gv-d~---~~l~~~l~~~l~~~~~~~~~--- 72 (852)
T TIGR03346 1 FTEKFQEALQAAQSLALGRDHQQIEPEHLLKALLDQEGGLARRLLQK-AGV-NV---GALRQALEKELEKLPKVSGP--- 72 (852)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCccHHHHHHHH-cCC-CH---HHHHHHHHHHhcccccCCCC---
Confidence 89999999999999999999999999999999999999999999999 999 76 89999999998876643221
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHHHHHHhccchhhhhhhcccccccccCHHHHHHHHhcCC-hHHHHHHHcCCChHHHHH
Q 003769 92 LGPHRHSPRPSLSNALVAAFKRAQAHQRRGSIENQQQQQQQPVLALKIEVEQLVISILDDP-SVSRVMREAGFSSSQVKI 170 (796)
Q Consensus 92 ~~~~~~~~~~~~S~~l~~aL~~A~~~a~~~~lg~~~~~~~~~~l~~kI~~eHLLLALL~d~-~~a~vL~~~Gis~~~l~~ 170 (796)
+. .++||+.++++|+.|+.++.. +|+++ |+++|||+||++++ ...++|..+|++.+.+++
T Consensus 73 --~~----~~~~S~~~~~vLe~A~~~A~~--~g~~~-----------I~teHLLlALl~e~~~a~~iL~~~gi~~~~l~~ 133 (852)
T TIGR03346 73 --GG----QVYLSPELNRLLNLAEKLAQK--RGDEF-----------ISSEHLLLALLDDKGTLGKLLKEAGATADALEA 133 (852)
T ss_pred --CC----CCCcCHHHHHHHHHHHHHHHH--cCCCc-----------ccHHHHHHHHHcCCccHHHHHHHcCCCHHHHHH
Confidence 11 588999999999999999987 78888 99999999999974 356899999999999988
Q ss_pred HHHhhcc-CCCC-----C--------------CCCCCCCCC---ChHHHHHHHHHHhh-ccCceEEEcCCcccHHHHHHH
Q 003769 171 KVEENVP-LGIC-----S--------------QSTNKSLGR---DSDDVMSVLNALIN-KKRNTVIVGGNLAAIEGVIRG 226 (796)
Q Consensus 171 ~v~~~v~-~~~~-----s--------------~~p~g~ldp---r~~ei~~vi~~L~r-~k~n~vLvGepGvGKTaiv~~ 226 (796)
.+.+... .... . ...+|++|| |++||++++++|+| +++||||+||||||||++|++
T Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 134 AINAVRGGQKVTSANAEDQYEALEKYARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred HHHhhccCccccccccccchhHHHHHhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 8753211 1110 0 112689999 99999999999999 999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCCceEEEeecccccc--cchHHHHHHHHHHHHHHHhccCCCEEEEEcchhhhhhhhcccCCCCccc
Q 003769 227 IIDQFERGQVPGDLRYAQFISLPLFSFRN--QSKGEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQK 304 (796)
Q Consensus 227 la~ri~~~~vp~~L~~~~v~~l~~~~l~a--~~rge~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~ 304 (796)
||++|.+++||..|++++++.+|++++++ +|+|+||++++.+++++... ++++||||||+|.|+++ |+++|
T Consensus 214 la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~-~~~~ILfIDEih~l~~~-----g~~~~- 286 (852)
T TIGR03346 214 LAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKS-EGQIILFIDELHTLVGA-----GKAEG- 286 (852)
T ss_pred HHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhc-CCCeEEEeccHHHhhcC-----CCCcc-
Confidence 99999999999999999999999999985 79999999999999999764 56899999999999987 65555
Q ss_pred cCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccccccceecccCCCCcccccc----cCCCC
Q 003769 305 RNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTIPVGSLSLSLN----IDSDS 380 (796)
Q Consensus 305 ~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp~~~l~~sl~----~~s~~ 380 (796)
++|++|+ ||+++ ++|+|.|||+||+++|++|+++||+|.||| |+|.|+.|+...++. ....+
T Consensus 287 -------~~d~~~~-Lk~~l----~~g~i~~IgaTt~~e~r~~~~~d~al~rRf--~~i~v~~p~~~~~~~iL~~~~~~~ 352 (852)
T TIGR03346 287 -------AMDAGNM-LKPAL----ARGELHCIGATTLDEYRKYIEKDAALERRF--QPVFVDEPTVEDTISILRGLKERY 352 (852)
T ss_pred -------hhHHHHH-hchhh----hcCceEEEEeCcHHHHHHHhhcCHHHHhcC--CEEEeCCCCHHHHHHHHHHHHHHh
Confidence 6789999 99877 499999999999999999999999999997 566666665444321 11223
Q ss_pred CCccceEeccchhcccccCCCccccchhhcchhhhhhhhhccccchhhhhHHHHhhhhhhHhHHHHhc-------CCchH
Q 003769 381 PPTHQFITTNKVQRDGLISWPLLESGAEHLNHLNCSSNVSVNYFNREGQSMATSIIHKKKSAVAVAKS-------TLPSW 453 (796)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~e~~~l~~~~~~~~~~~~~~~~~-------~lp~~ 453 (796)
+.+|++.+.+. .+..|...+.+|..+ ..+|+|+++++|++.+ ..|.-
T Consensus 353 e~~~~v~~~d~--------------------~i~~~~~ls~~yi~~------r~lPdkAidlld~a~a~~~~~~~~~~~~ 406 (852)
T TIGR03346 353 EVHHGVRITDP--------------------AIVAAATLSHRYITD------RFLPDKAIDLIDEAAARIRMEIDSKPEE 406 (852)
T ss_pred ccccCCCCCHH--------------------HHHHHHHhccccccc------cCCchHHHHHHHHHHHHHHhhccCCchh
Confidence 56677664431 122445556666542 2356777777766542 23332
Q ss_pred HHhhHH-------H--------H-----------HhhhhhhhHHHHHHHHHHhhccc--cc-cccCC----C---CCCcc
Q 003769 454 LQQYKE-------E--------S-----------RRNSNMINDNQDLCEKWNSFGNK--QT-HFSSS----S---PSSIS 497 (796)
Q Consensus 454 l~~~~~-------~--------~-----------~~~~~~~~~~~~L~~kw~~~~~~--~l-~~~s~----~---~~~~s 497 (796)
+..... + + .....+..++..+...|...... .+ .+... . .....
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (852)
T TIGR03346 407 LDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQVRLELEQAER 486 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 221100 0 0 00011222333445555443210 00 00000 0 00000
Q ss_pred cchhHhh-----hcccccccccc-ccccccc-cccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccHHHHHH
Q 003769 498 VSSQECK-----QLLPKEHQFWV-CEGYESS-LRSNHHPKPDLLSNPNSSPNSASSSEAAEEDSDCLNSFNKFTDENLKV 570 (796)
Q Consensus 498 ~s~~~~~-----~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~ 570 (796)
...+... ..++....... .+....+ ........+ .... .-..+.+.+ ++ +| +.++.+.+.++|.+
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-v~~~-~i~~v~~~~-tg--ip---~~~~~~~e~~~l~~ 558 (852)
T TIGR03346 487 EGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREE-VTAE-EIAEVVSRW-TG--IP---VSKMLEGEREKLLH 558 (852)
T ss_pred hhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCC-cCHH-HHHHHHHHh-cC--CC---cccccHHHHHHHHH
Confidence 0000000 00000000000 0000000 000000000 0000 000000111 11 23 23455667889999
Q ss_pred HHHHhhcCCCCCCcchHHHHHHHHHHHhhc-----cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCC
Q 003769 571 LSDALERKAVVPWQKEIMPEIARTILECRS-----KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQ 645 (796)
Q Consensus 571 l~~~L~~~~~v~gQ~~av~~ia~~i~~~rs-----~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~ 645 (796)
|++.|.++ |+||++||..|+.+|.++|+ +||.++|||+||+| ||||++|++||+.+|++. ..|+++|||+
T Consensus 559 l~~~l~~~--v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G--vGKt~lA~~La~~l~~~~-~~~i~~d~s~ 633 (852)
T TIGR03346 559 MEEVLHER--VVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTG--VGKTELAKALAEFLFDDE-DAMVRIDMSE 633 (852)
T ss_pred HHHHhhcc--cCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCC--CCHHHHHHHHHHHhcCCC-CcEEEEechh
Confidence 99999999 99999999999999999987 58999999999999 999999999999999998 9999999999
Q ss_pred CccccccccccCCC-CCCCCCCchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcE
Q 003769 646 SRQDDCRTKKRSRD-VELGCCSYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDS 724 (796)
Q Consensus 646 ~~~~~~~~~k~~~~-~~~~~~~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~ 724 (796)
| ++.|.+++++|+ |||.|+...++|+++++++||+|||||||||| || ++++.|+|+||+|+++|+.|++|||+||
T Consensus 634 ~-~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka--~~-~v~~~Ll~~l~~g~l~d~~g~~vd~rn~ 709 (852)
T TIGR03346 634 Y-MEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA--HP-DVFNVLLQVLDDGRLTDGQGRTVDFRNT 709 (852)
T ss_pred h-cccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC--CH-HHHHHHHHHHhcCceecCCCeEEecCCc
Confidence 9 678888888886 67887766789999999999999999999999 99 9999999999999999999999999999
Q ss_pred EEEeeCCCC
Q 003769 725 IIIFSCDSL 733 (796)
Q Consensus 725 IiilTsn~~ 733 (796)
|||||||.+
T Consensus 710 iiI~TSn~g 718 (852)
T TIGR03346 710 VIIMTSNLG 718 (852)
T ss_pred EEEEeCCcc
Confidence 999999954
No 6
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=9e-83 Score=769.88 Aligned_cols=617 Identities=17% Similarity=0.254 Sum_probs=464.9
Q ss_pred cchhhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHhhcCCCChhhHHHHHHHHHHHhccCCCCC
Q 003769 7 AVPQALTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKALELCFNVALNRLPAST 86 (796)
Q Consensus 7 ~~~erfT~~A~~vL~~A~~~Ar~~gh~~VtpeHLLlaLL~~~~g~l~~iL~~~~gi~~~~d~~aL~~~l~~~L~rlp~~~ 86 (796)
|++++||+.++.+|..|+.+|++++|.+|+++|||++|+.++.|.+..+|.. +|+ +. +.|+..++.++.+.|...
T Consensus 1 ~~~~~~~~~~~~~l~~a~~~a~~~~~~~~~~~hll~~l~~~~~~~~~~~l~~-~~~-~~---~~l~~~~~~~~~~~~~~~ 75 (857)
T PRK10865 1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVRPLLTS-AGI-NA---GQLRTDINQALSRLPQVE 75 (857)
T ss_pred CChHHhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCccHHHHHHHH-cCC-CH---HHHHHHHHHHHhhCCCCC
Confidence 4578999999999999999999999999999999999999999999999999 999 65 899999999998877532
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHhccchhhhhhhcccccccccCHHHHHHHHhcCC-hHHHHHHHcCCCh
Q 003769 87 ITSPLLGPHRHSPRPSLSNALVAAFKRAQAHQRRGSIENQQQQQQQPVLALKIEVEQLVISILDDP-SVSRVMREAGFSS 165 (796)
Q Consensus 87 ~~~~~~~~~~~~~~~~~S~~l~~aL~~A~~~a~~~~lg~~~~~~~~~~l~~kI~~eHLLLALL~d~-~~a~vL~~~Gis~ 165 (796)
+. +. .+++|+.++++|+.|+.+++. +++.+ |+++|||+++++++ ..+.+|..+|++.
T Consensus 76 ~~-----~~----~~~~~~~~~~~l~~a~~~~~~--~~~~~-----------i~~~~ll~~~~~~~~~~~~~l~~~~~~~ 133 (857)
T PRK10865 76 GT-----GG----DVQPSQDLVRVLNLCDKLAQK--RGDNF-----------ISSELFVLAALESRGTLADILKAAGATT 133 (857)
T ss_pred CC-----CC----CCCcCHHHHHHHHHHHHHHHH--cCCCc-----------ccHHHHHHHHHcCcchHHHHHHHcCCCH
Confidence 21 11 578999999999999999986 67777 99999999999974 4567899999999
Q ss_pred HHHHHHHHhhcc-CCCC-----CC--------------CCCCCCCC---ChHHHHHHHHHHhh-ccCceEEEcCCcccHH
Q 003769 166 SQVKIKVEENVP-LGIC-----SQ--------------STNKSLGR---DSDDVMSVLNALIN-KKRNTVIVGGNLAAIE 221 (796)
Q Consensus 166 ~~l~~~v~~~v~-~~~~-----s~--------------~p~g~ldp---r~~ei~~vi~~L~r-~k~n~vLvGepGvGKT 221 (796)
+.+++.+.+... .... .. ..+|++|| |+.||++++++|+| +++|+||+||||||||
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT 213 (857)
T PRK10865 134 ANITQAIEQMRGGESVNDQGAEDQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKT 213 (857)
T ss_pred HHHHHHHHHhhccccccccccccchhHHHHHhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHH
Confidence 999887753211 1110 00 11589999 99999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCceEEEeecccccc--cchHHHHHHHHHHHHHHHhccCCCEEEEEcchhhhhhhhcccCC
Q 003769 222 GVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN--QSKGEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYG 299 (796)
Q Consensus 222 aiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a--~~rge~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G 299 (796)
++|++||+++.+|+||+.|++++++.++++++++ +|+|+||+|++++++++... ++++||||||+|+|+++ |
T Consensus 214 ~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~-~~~~ILfIDEih~l~~~-----~ 287 (857)
T PRK10865 214 AIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQ-EGNVILFIDELHTMVGA-----G 287 (857)
T ss_pred HHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHc-CCCeEEEEecHHHhccC-----C
Confidence 9999999999999999999999999999999986 79999999999999998764 67899999999999988 6
Q ss_pred CCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccccccceecccCCCCcccccc----
Q 003769 300 GDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTIPVGSLSLSLN---- 375 (796)
Q Consensus 300 ~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp~~~l~~sl~---- 375 (796)
+++| ++|++|+ ||+.+ ++|+|.||||||+++|++|+++||||.|||+ +|.|+.|+...++.
T Consensus 288 ~~~~--------~~d~~~~-lkp~l----~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~--~i~v~eP~~~~~~~iL~~ 352 (857)
T PRK10865 288 KADG--------AMDAGNM-LKPAL----ARGELHCVGATTLDEYRQYIEKDAALERRFQ--KVFVAEPSVEDTIAILRG 352 (857)
T ss_pred CCcc--------chhHHHH-hcchh----hcCCCeEEEcCCCHHHHHHhhhcHHHHhhCC--EEEeCCCCHHHHHHHHHH
Confidence 5555 7899999 99777 5999999999999999999999999999985 56666555443321
Q ss_pred cCCCCCCccceEeccchhcccccCCCccccchhhcchhhhhhhhhccccchhhhhHHHHhhhhhhHhHHHHhc-------
Q 003769 376 IDSDSPPTHQFITTNKVQRDGLISWPLLESGAEHLNHLNCSSNVSVNYFNREGQSMATSIIHKKKSAVAVAKS------- 448 (796)
Q Consensus 376 ~~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~e~~~l~~~~~~~~~~~~~~~~~------- 448 (796)
....++.+|++.+++.+ +..+...+.+|..+ ..+|+|++++++++.+
T Consensus 353 l~~~~e~~~~v~~~d~a--------------------~~~a~~ls~ry~~~------~~~pdkAi~LiD~aaa~~rl~~~ 406 (857)
T PRK10865 353 LKERYELHHHVQITDPA--------------------IVAAATLSHRYIAD------RQLPDKAIDLIDEAASSIRMQID 406 (857)
T ss_pred HhhhhccCCCCCcCHHH--------------------HHHHHHHhhccccC------CCCChHHHHHHHHHhcccccccc
Confidence 11223567777765421 11222334444321 1245555555544432
Q ss_pred CCchHHHhhHH--------------H------------HHhhhhhhhHHHHHHHHHHhhcccccc----ccC--------
Q 003769 449 TLPSWLQQYKE--------------E------------SRRNSNMINDNQDLCEKWNSFGNKQTH----FSS-------- 490 (796)
Q Consensus 449 ~lp~~l~~~~~--------------~------------~~~~~~~~~~~~~L~~kw~~~~~~~l~----~~s-------- 490 (796)
..|.-|+.... + .+....+..++..|..+|...... +. ...
T Consensus 407 ~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~e-l~~~~~~~~ele~l~~k 485 (857)
T PRK10865 407 SKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKAS-LSGTQTIKAELEQAKIA 485 (857)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHH
Confidence 12222211100 0 000011223334456666554321 00 000
Q ss_pred ----CCC-CCcccchhHhhhcccccccc-----------------ccccccccccccCCCCCCCCCCCCCCCCCCCCCCc
Q 003769 491 ----SSP-SSISVSSQECKQLLPKEHQF-----------------WVCEGYESSLRSNHHPKPDLLSNPNSSPNSASSSE 548 (796)
Q Consensus 491 ----~~~-~~~s~s~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (796)
... .....+..+ ...++..... ..-+.+++++.+.|++
T Consensus 486 ie~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tg------------------- 545 (857)
T PRK10865 486 IEQARRVGDLARMSELQ-YGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAEVLARWTG------------------- 545 (857)
T ss_pred HHHHHhhhhhhhHHHhh-hhhhHHHHHHHHHHHhhhccccccccCccCHHHHHHHHHHHHC-------------------
Confidence 000 000000000 0000000000 0000000111112211
Q ss_pred ccccccccccccccccHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHhhc-----cCCCeEEEEecCCCCCchHHHHH
Q 003769 549 AAEEDSDCLNSFNKFTDENLKVLSDALERKAVVPWQKEIMPEIARTILECRS-----KKEQTWLLFLGADDHNHGKEKIA 623 (796)
Q Consensus 549 ~~~~~~~~~~~~~~~~~e~L~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~rs-----~~~~~~~lf~Gp~g~~vGKt~lA 623 (796)
+| +.++.+.+.++|.+|++.|.++ |+||++||..|+.+|.++|+ +||.+||||+||+| +|||++|
T Consensus 546 ---ip---~~~~~~~~~~~l~~l~~~l~~~--viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G--~GKT~lA 615 (857)
T PRK10865 546 ---IP---VSRMLESEREKLLRMEQELHHR--VIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTG--VGKTELC 615 (857)
T ss_pred ---CC---chhhhhhHHHHHHHHHHHhCCe--EeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCC--CCHHHHH
Confidence 23 2455566788999999999999 99999999999999999986 67889999999999 9999999
Q ss_pred HHHHHHHcCCCCCceEEecCCCCccccccccccCCC-CCCCCCCchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHH
Q 003769 624 REIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD-VELGCCSYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGL 702 (796)
Q Consensus 624 k~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~-~~~~~~~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l 702 (796)
++||+.+|++. ..|+++||++| ++.+..++++|+ |+|.|+...+.|+++++++||+|||||||||+ || ++++.|
T Consensus 616 ~aLa~~l~~~~-~~~i~id~se~-~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka--~~-~v~~~L 690 (857)
T PRK10865 616 KALANFMFDSD-DAMVRIDMSEF-MEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA--HP-DVFNIL 690 (857)
T ss_pred HHHHHHhhcCC-CcEEEEEhHHh-hhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC--CH-HHHHHH
Confidence 99999999998 89999999998 577777888885 67877766789999999999999999999999 99 999999
Q ss_pred HHHHHcceEecCCCceecCCcEEEEeeCCCC
Q 003769 703 KQAIENGCIALADGEIVPLKDSIIIFSCDSL 733 (796)
Q Consensus 703 ~q~~d~G~l~d~~G~~v~~~n~IiilTsn~~ 733 (796)
+|+||+|+++|+.|++|||+|||||||||..
T Consensus 691 l~ile~g~l~d~~gr~vd~rn~iiI~TSN~g 721 (857)
T PRK10865 691 LQVLDDGRLTDGQGRTVDFRNTVVIMTSNLG 721 (857)
T ss_pred HHHHhhCceecCCceEEeecccEEEEeCCcc
Confidence 9999999999999999999999999999953
No 7
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=2.6e-82 Score=758.14 Aligned_cols=598 Identities=17% Similarity=0.269 Sum_probs=460.8
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHhhcCCCChhhHHHHHHHHHHHhc-cCCCCCCCCC
Q 003769 12 LTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKALELCFNVALN-RLPASTITSP 90 (796)
Q Consensus 12 fT~~A~~vL~~A~~~Ar~~gh~~VtpeHLLlaLL~~~~g~l~~iL~~~~gi~~~~d~~aL~~~l~~~L~-rlp~~~~~~~ 90 (796)
||+.++++|..|+++|++++|++|+|+|||+|||.+++ +.++|+. +|+ +. +.++..++..+. +.|...+..
T Consensus 1 ~~~~a~~~L~~A~~~A~~~~h~~V~~EHLLlaLL~~~~--~~~iL~~-~gi-d~---~~l~~~l~~~l~~~~p~~~~~~- 72 (731)
T TIGR02639 1 ISEELERILDAALEEAKKRRHEFVTLEHILLALLFDSD--AIEILEE-CGG-DV---EALRKDLEDYLENNLPSITEEN- 72 (731)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHcCch--HHHHHHH-cCC-CH---HHHHHHHHHHHhhcCCCCCCCC-
Confidence 68999999999999999999999999999999999765 5689999 999 65 899999998887 455432210
Q ss_pred CCCCCCCCCCCcccHHHHHHHHHHHHHHHhccchhhhhhhcccccccccCHHHHHHHHhcCC--hHHHHHHHcCCChHHH
Q 003769 91 LLGPHRHSPRPSLSNALVAAFKRAQAHQRRGSIENQQQQQQQPVLALKIEVEQLVISILDDP--SVSRVMREAGFSSSQV 168 (796)
Q Consensus 91 ~~~~~~~~~~~~~S~~l~~aL~~A~~~a~~~~lg~~~~~~~~~~l~~kI~~eHLLLALL~d~--~~a~vL~~~Gis~~~l 168 (796)
+. .+++|+.++++|+.|+.+|.. +|+++ |+++|||+||++++ .+.++|..+|++.+.+
T Consensus 73 ---~~----~~~~S~~lk~vL~~A~~~A~~--~g~~~-----------I~teHLLLALl~~~~~~a~~lL~~~gi~~~~l 132 (731)
T TIGR02639 73 ---EA----DPEQTVGVQRVLQRALLHVKS--AGKKE-----------IGIGDILVALFDEEDSHASYFLKSQGITRLDI 132 (731)
T ss_pred ---CC----CCCcCHHHHHHHHHHHHHHHH--cCCCc-----------cCHHHHHHHHhcCcccHHHHHHHHcCCCHHHH
Confidence 11 578999999999999999987 88888 99999999999873 3467999999999999
Q ss_pred HHHHHhhcc----C-CC------C---CCC--------------CCCCCCC---ChHHHHHHHHHHhh-ccCceEEEcCC
Q 003769 169 KIKVEENVP----L-GI------C---SQS--------------TNKSLGR---DSDDVMSVLNALIN-KKRNTVIVGGN 216 (796)
Q Consensus 169 ~~~v~~~v~----~-~~------~---s~~--------------p~g~ldp---r~~ei~~vi~~L~r-~k~n~vLvGep 216 (796)
.+.+..... . .. . .+. ..|++|| |++||++++++|+| +++||||+|||
T Consensus 133 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~p 212 (731)
T TIGR02639 133 LEYISHGIPKDDGKNRDAEEAGKEEAKKQEDALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEP 212 (731)
T ss_pred HHHHHhhcccccccccccccccccccccchhHHHHHhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCC
Confidence 887752111 0 00 0 000 1588999 99999999999999 99999999999
Q ss_pred cccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc--cchHHHHHHHHHHHHHHHhccCCCEEEEEcchhhhhhhh
Q 003769 217 LAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN--QSKGEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFW 294 (796)
Q Consensus 217 GvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a--~~rge~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~~ 294 (796)
|||||++|++||+++..++||..|++++++++|++++++ +|+|+||+++++++++++. .+++||||||+|.|+++
T Consensus 213 G~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~--~~~~ILfiDEih~l~~~- 289 (731)
T TIGR02639 213 GVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEK--EPNAILFIDEIHTIVGA- 289 (731)
T ss_pred CCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhc--cCCeEEEEecHHHHhcc-
Confidence 999999999999999999999999999999999999986 8999999999999999986 46899999999999987
Q ss_pred cccCCCC-ccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccccccceecccCCCCcccc
Q 003769 295 ANYYGGD-EQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTIPVGSLSLS 373 (796)
Q Consensus 295 ~~~~G~~-~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp~~~l~~s 373 (796)
|.. +| .+|++++ ||+.+ ++|+|.||||||+++|++|+++||||.|||+ +|.|++|+...+
T Consensus 290 ----g~~~~~--------~~~~~~~-L~~~l----~~g~i~~IgaTt~~e~~~~~~~d~al~rRf~--~i~v~~p~~~~~ 350 (731)
T TIGR02639 290 ----GATSGG--------SMDASNL-LKPAL----SSGKLRCIGSTTYEEYKNHFEKDRALSRRFQ--KIDVGEPSIEET 350 (731)
T ss_pred ----CCCCCc--------cHHHHHH-HHHHH----hCCCeEEEEecCHHHHHHHhhhhHHHHHhCc--eEEeCCCCHHHH
Confidence 432 22 5788898 99777 4999999999999999999999999999984 666666654433
Q ss_pred cc----cCCCCCCccceEeccchhcccccCCCccccchhhcchhhhhhhhhccccchhhhhHHHHhhhhhhHhHHHHhcC
Q 003769 374 LN----IDSDSPPTHQFITTNKVQRDGLISWPLLESGAEHLNHLNCSSNVSVNYFNREGQSMATSIIHKKKSAVAVAKST 449 (796)
Q Consensus 374 l~----~~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~e~~~l~~~~~~~~~~~~~~~~~~ 449 (796)
+. ....++.+|++.+++ . .+..|...+.+|..+ ..+|+|++++++++.+.
T Consensus 351 ~~il~~~~~~~e~~~~v~i~~--------------~------al~~~~~ls~ryi~~------r~~P~kai~lld~a~a~ 404 (731)
T TIGR02639 351 VKILKGLKEKYEEFHHVKYSD--------------E------ALEAAVELSARYIND------RFLPDKAIDVIDEAGAS 404 (731)
T ss_pred HHHHHHHHHHHHhccCcccCH--------------H------HHHHHHHhhhccccc------ccCCHHHHHHHHHhhhh
Confidence 21 011124566655432 1 223455666777542 13466666665543321
Q ss_pred CchHHHhhHHHHHhhhhhhhHHHHHHHHHHhhccccccccCCCCCCcccchhHhhhccccccccccccccccccccCCCC
Q 003769 450 LPSWLQQYKEESRRNSNMINDNQDLCEKWNSFGNKQTHFSSSSPSSISVSSQECKQLLPKEHQFWVCEGYESSLRSNHHP 529 (796)
Q Consensus 450 lp~~l~~~~~~~~~~~~~~~~~~~L~~kw~~~~~~~l~~~s~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (796)
. .+++. . .+...++ . .+..++.+.|++
T Consensus 405 ~--~~~~~--------------------------------~--~~~~~v~-~----------------~~i~~~i~~~tg 431 (731)
T TIGR02639 405 F--RLRPK--------------------------------A--KKKANVS-V----------------KDIENVVAKMAH 431 (731)
T ss_pred h--hcCcc--------------------------------c--ccccccC-H----------------HHHHHHHHHHhC
Confidence 0 00000 0 0000011 0 000112222333
Q ss_pred CCCCCCCCCCCCCCCCCCcccccccccccccccccHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHhhc-----cCCC
Q 003769 530 KPDLLSNPNSSPNSASSSEAAEEDSDCLNSFNKFTDENLKVLSDALERKAVVPWQKEIMPEIARTILECRS-----KKEQ 604 (796)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~rs-----~~~~ 604 (796)
+| +.+++..+.++|.+|++.|+++ |+||++||..|+.+|.++|+ +||.
T Consensus 432 iP-------------------------~~~~~~~~~~~l~~l~~~l~~~--v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~ 484 (731)
T TIGR02639 432 IP-------------------------VKTVSVDDREKLKNLEKNLKAK--IFGQDEAIDSLVSSIKRSRAGLGNPNKPV 484 (731)
T ss_pred CC-------------------------hhhhhhHHHHHHHHHHHHHhcc--eeCcHHHHHHHHHHHHHHhcCCCCCCCCc
Confidence 32 1234455678999999999999 99999999999999999987 5899
Q ss_pred eEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCC-CCCCCCCchhhHHHHHHhCCCEEE
Q 003769 605 TWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD-VELGCCSYIERLGLALNENPHRVF 683 (796)
Q Consensus 605 ~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~-~~~~~~~~~~~L~eavr~~P~~Vv 683 (796)
++|||+||+| ||||+|||+||+.++ .+|+++|||+| ++.|++++++|+ +||.|++..++|+++++++||+||
T Consensus 485 ~~~lf~Gp~G--vGKT~lA~~la~~l~----~~~~~~d~se~-~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~Vv 557 (731)
T TIGR02639 485 GSFLFTGPTG--VGKTELAKQLAEALG----VHLERFDMSEY-MEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVL 557 (731)
T ss_pred eeEEEECCCC--ccHHHHHHHHHHHhc----CCeEEEeCchh-hhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEE
Confidence 9999999999 999999999999994 45999999999 788888999986 688888878899999999999999
Q ss_pred EEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCCCCCCCCcCCCCCCCCCcccCCCCCccceeec
Q 003769 684 FMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDSLDSVPSACSHQNKRPKTEEKDDDCNLSLDLN 763 (796)
Q Consensus 684 l~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~l~ 763 (796)
|||||||| || ++++.|+|+||+|+++|+.|++|||+|+|||||||.+. .. .. ....+|.-.
T Consensus 558 llDEieka--~~-~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~---~~---~~----------~~~~~f~~~ 618 (731)
T TIGR02639 558 LLDEIEKA--HP-DIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGA---SE---MS----------KPPIGFGSE 618 (731)
T ss_pred EEechhhc--CH-HHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcch---hh---hh----------hccCCcchh
Confidence 99999999 99 99999999999999999999999999999999999641 10 10 001234211
Q ss_pred ccccccccccccc--chhhhhhcceEEEeec
Q 003769 764 IAIEDEDDRSVGD--IRNILESVDKQIIFKT 792 (796)
Q Consensus 764 ~~~~~~~~~~~~~--~~~~~~~vd~~~~f~~ 792 (796)
..++...+.+.+ .|+|+|++|.+|.|+-
T Consensus 619 -~~~~~~~~~~~~~f~pef~~Rid~Vi~F~p 648 (731)
T TIGR02639 619 -NVESKSDKAIKKLFSPEFRNRLDAIIHFNP 648 (731)
T ss_pred -hhHHHHHHHHHhhcChHHHhcCCeEEEcCC
Confidence 001100011111 2999999999999984
No 8
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-79 Score=724.11 Aligned_cols=557 Identities=16% Similarity=0.232 Sum_probs=444.4
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHhhcCCCChhhHHHHHHHHHHHhcc-CCCCCCCCC
Q 003769 12 LTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKALELCFNVALNR-LPASTITSP 90 (796)
Q Consensus 12 fT~~A~~vL~~A~~~Ar~~gh~~VtpeHLLlaLL~~~~g~l~~iL~~~~gi~~~~d~~aL~~~l~~~L~r-lp~~~~~~~ 90 (796)
||+.+..+|..|+.+|++++|.+|+++|||++||.++. +..+|.. +|+ +. +.++..++..+.. .|...+..
T Consensus 2 ~~~~~~~~l~~a~~~a~~~~~~~~~~~h~l~~l~~~~~--~~~~~~~-~~~-~~---~~~~~~~~~~~~~~~~~~~~~~- 73 (758)
T PRK11034 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPS--AREALEA-CSV-DL---VALRQELEAFIEQTTPVLPASE- 73 (758)
T ss_pred cCHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHcChh--HHHHHHH-cCC-CH---HHHHHHHHHHHhhcCCcCCCCC-
Confidence 78999999999999999999999999999999998754 8899999 998 65 8899999988863 33211110
Q ss_pred CCCCCCCCCCCcccHHHHHHHHHHHHHHHhccchhhhhhhcccccccccCHHHHHHHHhcCC--hHHHHHHHcCCChHHH
Q 003769 91 LLGPHRHSPRPSLSNALVAAFKRAQAHQRRGSIENQQQQQQQPVLALKIEVEQLVISILDDP--SVSRVMREAGFSSSQV 168 (796)
Q Consensus 91 ~~~~~~~~~~~~~S~~l~~aL~~A~~~a~~~~lg~~~~~~~~~~l~~kI~~eHLLLALL~d~--~~a~vL~~~Gis~~~l 168 (796)
. +. .++++..++++|+.|+.+++. +++.+ |+++|||+||++++ .+..+|..+|++...+
T Consensus 74 ~--~~----~~~~~~~~~~~l~~a~~~~~~--~~~~~-----------i~~~~ll~a~~~~~~~~~~~~l~~~~~~~~~~ 134 (758)
T PRK11034 74 E--ER----DTQPTLSFQRVLQRAVFHVQS--SGRSE-----------VTGANVLVAIFSEQESQAAYLLRKHEVSRLDV 134 (758)
T ss_pred C--cC----CcCCCHHHHHHHHHHHHHHHH--cCCCc-----------ccHHHHHHHHhcCCcchHHHHHHHcCCCHHHH
Confidence 0 01 367888999999999999986 67777 99999999999874 3567899999998887
Q ss_pred HHHHHhhccC--CC-----------C---CC--------------CCCCCCCC---ChHHHHHHHHHHhh-ccCceEEEc
Q 003769 169 KIKVEENVPL--GI-----------C---SQ--------------STNKSLGR---DSDDVMSVLNALIN-KKRNTVIVG 214 (796)
Q Consensus 169 ~~~v~~~v~~--~~-----------~---s~--------------~p~g~ldp---r~~ei~~vi~~L~r-~k~n~vLvG 214 (796)
...+...... .. . .. +.+|++|| |+++|++++++|+| +++||+|+|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvG 214 (758)
T PRK11034 135 VNFISHGTRKDEPSQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVG 214 (758)
T ss_pred HHHHHhCCccccccccccccccccccccccchhHHHHHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEEC
Confidence 6665421100 00 0 00 01699999 99999999999999 999999999
Q ss_pred CCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc--cchHHHHHHHHHHHHHHHhccCCCEEEEEcchhhhhh
Q 003769 215 GNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN--QSKGEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAE 292 (796)
Q Consensus 215 epGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a--~~rge~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~ 292 (796)
|||||||++|+++++++..+++|..+.+.++++++++++++ +|+|+||+|++.++++++. .+++||||||+|.|++
T Consensus 215 ppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~--~~~~ILfIDEIh~L~g 292 (758)
T PRK11034 215 ESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ--DTNSILFIDEIHTIIG 292 (758)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHh--cCCCEEEeccHHHHhc
Confidence 99999999999999999999999999999999999999986 7999999999999999986 4678999999999998
Q ss_pred hhcccCCCC-ccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccccccceecccCCCCcc
Q 003769 293 FWANYYGGD-EQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTIPVGSLS 371 (796)
Q Consensus 293 ~~~~~~G~~-~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp~~~l~ 371 (796)
+ |++ +| .+|++|+ ||+++ ++|++.||||||+++|++++++||||.||| |+|.||+|+..
T Consensus 293 ~-----g~~~~g--------~~d~~nl-Lkp~L----~~g~i~vIgATt~~E~~~~~~~D~AL~rRF--q~I~v~ePs~~ 352 (758)
T PRK11034 293 A-----GAASGG--------QVDAANL-IKPLL----SSGKIRVIGSTTYQEFSNIFEKDRALARRF--QKIDITEPSIE 352 (758)
T ss_pred c-----CCCCCc--------HHHHHHH-HHHHH----hCCCeEEEecCChHHHHHHhhccHHHHhhC--cEEEeCCCCHH
Confidence 7 432 33 6789999 99888 499999999999999999999999999998 57777777655
Q ss_pred ccc---cc-CCCCCCccceEeccchhcccccCCCccccchhhcchhhhhhhhhccccchhhhhHHHHhhhhhhHhHHHHh
Q 003769 372 LSL---NI-DSDSPPTHQFITTNKVQRDGLISWPLLESGAEHLNHLNCSSNVSVNYFNREGQSMATSIIHKKKSAVAVAK 447 (796)
Q Consensus 372 ~sl---~~-~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~e~~~l~~~~~~~~~~~~~~~~ 447 (796)
.++ .. ...++.+|++.+++. ++.++...+.+|..+ ..+|+|++++++++.
T Consensus 353 ~~~~IL~~~~~~ye~~h~v~i~~~--------------------al~~a~~ls~ryi~~------r~lPdKaidlldea~ 406 (758)
T PRK11034 353 ETVQIINGLKPKYEAHHDVRYTAK--------------------AVRAAVELAVKYIND------RHLPDKAIDVIDEAG 406 (758)
T ss_pred HHHHHHHHHHHHhhhccCCCcCHH--------------------HHHHHHHHhhccccC------ccChHHHHHHHHHHH
Confidence 442 11 122366777775431 223556667787643 235777777766654
Q ss_pred cCCchHHHhhHHHHHhhhhhhhHHHHHHHHHHhhccccccccCCCCCCcccchhHhhhccccccccccccccccccccCC
Q 003769 448 STLPSWLQQYKEESRRNSNMINDNQDLCEKWNSFGNKQTHFSSSSPSSISVSSQECKQLLPKEHQFWVCEGYESSLRSNH 527 (796)
Q Consensus 448 ~~lp~~l~~~~~~~~~~~~~~~~~~~L~~kw~~~~~~~l~~~s~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (796)
... .+... . . .+ ..++ ..++.++.+.|
T Consensus 407 a~~--~~~~~--------~-~--------------~~-----------~~v~-----------------~~~i~~v~~~~ 433 (758)
T PRK11034 407 ARA--RLMPV--------S-K--------------RK-----------KTVN-----------------VADIESVVARI 433 (758)
T ss_pred Hhh--ccCcc--------c-c--------------cc-----------cccC-----------------hhhHHHHHHHH
Confidence 310 00000 0 0 00 0000 00112234445
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccccccccccccccccHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHhhc-----cC
Q 003769 528 HPKPDLLSNPNSSPNSASSSEAAEEDSDCLNSFNKFTDENLKVLSDALERKAVVPWQKEIMPEIARTILECRS-----KK 602 (796)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~rs-----~~ 602 (796)
+++| +.++.+.+.++|+.|++.|+++ |+||++||..|+.+|.++|+ +|
T Consensus 434 tgip-------------------------~~~~~~~~~~~l~~l~~~L~~~--ViGQ~~ai~~l~~~i~~~~~gl~~~~k 486 (758)
T PRK11034 434 ARIP-------------------------EKSVSQSDRDTLKNLGDRLKML--VFGQDKAIEALTEAIKMSRAGLGHEHK 486 (758)
T ss_pred hCCC-------------------------hhhhhhhHHHHHHHHHHHhcce--EeCcHHHHHHHHHHHHHHhccccCCCC
Confidence 5444 1234455678999999999999 99999999999999999987 68
Q ss_pred CCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCC-CCCCCCCchhhHHHHHHhCCCE
Q 003769 603 EQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD-VELGCCSYIERLGLALNENPHR 681 (796)
Q Consensus 603 ~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~-~~~~~~~~~~~L~eavr~~P~~ 681 (796)
|.++|||+||+| +|||++|++||+.+ + .+|+++||++| ++.|.+++++|+ +||.|+.-.+.|+++|+++||+
T Consensus 487 p~~~~Lf~GP~G--vGKT~lAk~LA~~l-~---~~~i~id~se~-~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~s 559 (758)
T PRK11034 487 PVGSFLFAGPTG--VGKTEVTVQLSKAL-G---IELLRFDMSEY-MERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHA 559 (758)
T ss_pred CcceEEEECCCC--CCHHHHHHHHHHHh-C---CCcEEeechhh-cccccHHHHcCCCCCcccccccchHHHHHHhCCCc
Confidence 999999999999 99999999999998 3 45999999999 678888888886 5787766567999999999999
Q ss_pred EEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCCC
Q 003769 682 VFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDSL 733 (796)
Q Consensus 682 Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~~ 733 (796)
|||||||||| || +|++.|+|+||+|+++|+.|++|||+|||||||||..
T Consensus 560 VlllDEieka--~~-~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g 608 (758)
T PRK11034 560 VLLLDEIEKA--HP-DVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAG 608 (758)
T ss_pred EEEeccHhhh--hH-HHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcC
Confidence 9999999999 99 9999999999999999999999999999999999953
No 9
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.91 E-value=3.2e-25 Score=221.64 Aligned_cols=114 Identities=20% Similarity=0.374 Sum_probs=96.8
Q ss_pred CCCeEEEEecCCCCCchHHHHHHHHHHHHc-CCCCCceEEecCCCCccc----cccccccCCCCCCCCCCchhhHHHHHH
Q 003769 602 KEQTWLLFLGADDHNHGKEKIAREIAKVVF-GSHSNNFTNLSSSQSRQD----DCRTKKRSRDVELGCCSYIERLGLALN 676 (796)
Q Consensus 602 ~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~f-g~~~~~~i~~dms~~~~~----~~~~~k~~~~~~~~~~~~~~~L~eavr 676 (796)
||.++|||+||+| ||||+||++||+++| |++ .+|+++||++|+ + ++.+.++.++++ +|+ .
T Consensus 1 ~p~~~~ll~GpsG--vGKT~la~~la~~l~~~~~-~~~~~~d~s~~~-~~~~~~~~~~~l~~~~~----~~v-------~ 65 (171)
T PF07724_consen 1 RPKSNFLLAGPSG--VGKTELAKALAELLFVGSE-RPLIRIDMSEYS-EGDDVESSVSKLLGSPP----GYV-------G 65 (171)
T ss_dssp S-SEEEEEESSTT--SSHHHHHHHHHHHHT-SSC-CEEEEEEGGGHC-SHHHCSCHCHHHHHHTT----CHH-------H
T ss_pred CCEEEEEEECCCC--CCHHHHHHHHHHHhccCCc-cchHHHhhhccc-ccchHHhhhhhhhhccc----cee-------e
Confidence 7999999999999 999999999999999 898 999999999994 4 555556555431 222 2
Q ss_pred hCCCEEEEEcccccCCCCh----------HHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 677 ENPHRVFFMEDLDDHKVDS----------CYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 677 ~~P~~Vvl~deieka~~~~----------~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
..++.|||||||||| |+ ..||+.|||+||+|+++|++|++|||+|+|||||||.
T Consensus 66 ~~~~gVVllDEidKa--~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~ 129 (171)
T PF07724_consen 66 AEEGGVVLLDEIDKA--HPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNF 129 (171)
T ss_dssp HHHHTEEEEETGGGC--SHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESS
T ss_pred ccchhhhhhHHHhhc--cccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccc
Confidence 222339999999999 98 6899999999999999999999999999999999994
No 10
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.81 E-value=7.8e-20 Score=204.88 Aligned_cols=144 Identities=17% Similarity=0.217 Sum_probs=117.8
Q ss_pred HHHHHHHHhhcCCCCCCcchHHHHHHHHHHHhhc---c---C--------CCeEEEEecCCCCCchHHHHHHHHHHHHcC
Q 003769 567 NLKVLSDALERKAVVPWQKEIMPEIARTILECRS---K---K--------EQTWLLFLGADDHNHGKEKIAREIAKVVFG 632 (796)
Q Consensus 567 ~L~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~rs---~---~--------~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg 632 (796)
..+.|.+.|.+. |+||++|+..++.+|...+. . + +.+.+||.||+| +|||++|++||+.+ +
T Consensus 67 ~p~~i~~~L~~~--ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~G--sGKT~lAraLA~~l-~ 141 (413)
T TIGR00382 67 TPKEIKAHLDEY--VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTG--SGKTLLAQTLARIL-N 141 (413)
T ss_pred CHHHHHHHhcce--ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCC--cCHHHHHHHHHHhc-C
Confidence 356789999999 99999999999999954333 1 1 147899999999 99999999999877 4
Q ss_pred CCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCE-------EEEEcccccCCCChH---------
Q 003769 633 SHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHR-------VFFMEDLDDHKVDSC--------- 696 (796)
Q Consensus 633 ~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~-------Vvl~deieka~~~~~--------- 696 (796)
-.|+.+|++... .++|.|.+..+.|+++++..|+. |||||||||+ ++.
T Consensus 142 ---~pf~~~da~~L~-----------~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl--~~~~~~~s~~~d 205 (413)
T TIGR00382 142 ---VPFAIADATTLT-----------EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKI--SRKSENPSITRD 205 (413)
T ss_pred ---CCeEEechhhcc-----------ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchh--chhhcccccccc
Confidence 347777765331 14566665556889998888775 8999999999 761
Q ss_pred ----HHHHHHHHHHHcceEec---CCCceecCCcEEEEeeCCC
Q 003769 697 ----YCQKGLKQAIENGCIAL---ADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 697 ----~v~~~l~q~~d~G~l~d---~~G~~v~~~n~IiilTsn~ 732 (796)
.||+.|||++ +|+++| ..|++++|+|+|+|||||.
T Consensus 206 vsg~~vq~~LL~iL-eG~~~~v~~~~gr~~~~~~~i~i~TsNi 247 (413)
T TIGR00382 206 VSGEGVQQALLKII-EGTVANVPPQGGRKHPYQEFIQIDTSNI 247 (413)
T ss_pred ccchhHHHHHHHHh-hccceecccCCCccccCCCeEEEEcCCc
Confidence 5999999999 599998 7889999999999999998
No 11
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.8e-17 Score=186.72 Aligned_cols=135 Identities=15% Similarity=0.236 Sum_probs=102.2
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
-.+.++|+||||||||.+++++|..+ ++.|++++...+++.+-||.|+++++||+.+++ ..|+|+|||
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel----------~vPf~~isApeivSGvSGESEkkiRelF~~A~~--~aPcivFiD 289 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGEL----------GVPFLSISAPEIVSGVSGESEKKIRELFDQAKS--NAPCIVFID 289 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhc----------CCceEeecchhhhcccCcccHHHHHHHHHHHhc--cCCeEEEee
Confidence 56899999999999999999999865 578999999999999999999999999999998 579999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhH-HHHHHHHHHHhhhcCC----CCcEEEEEecChHHHHHhhhcCccccc--cc
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVE-EYVVMEIKRLVFEIGE----SERVWIMGIASFQTYTRCKAGHPSLEN--MW 358 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~-d~~~~eLk~L~~~~~~----~G~l~~IGatT~~ey~k~~~~dpaLer--rf 358 (796)
||+.+.+.|.. ++. -| ..+|..|-..+.++.. +..+.+||||+.-. ..||||-| ||
T Consensus 290 eIDAI~pkRe~---aqr---------eMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPD-----slDpaLRRaGRF 352 (802)
T KOG0733|consen 290 EIDAITPKREE---AQR---------EMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPD-----SLDPALRRAGRF 352 (802)
T ss_pred cccccccchhh---HHH---------HHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCc-----ccCHHHhccccc
Confidence 99999998742 111 23 2444433333333321 23599999998532 57888887 66
Q ss_pred cc-eecccCCCC
Q 003769 359 KL-HPFTIPVGS 369 (796)
Q Consensus 359 ~l-q~V~vp~~~ 369 (796)
+- +-+.||+..
T Consensus 353 drEI~l~vP~e~ 364 (802)
T KOG0733|consen 353 DREICLGVPSET 364 (802)
T ss_pred cceeeecCCchH
Confidence 51 345667653
No 12
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.73 E-value=2.7e-16 Score=189.93 Aligned_cols=133 Identities=17% Similarity=0.206 Sum_probs=97.7
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEcc
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLGD 286 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfIDE 286 (796)
.++++|+||||||||++++.+|..+ +..++.++...+..+|.|+.+++++++++.+.. ..+.||||||
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~----------~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~--~~p~il~iDE 279 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEA----------GAYFISINGPEIMSKYYGESEERLREIFKEAEE--NAPSIIFIDE 279 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHh----------CCeEEEEecHHHhcccccHHHHHHHHHHHHHHh--cCCcEEEeeh
Confidence 4789999999999999999999865 357899998888889999999999999999887 5689999999
Q ss_pred hhhhhhhhcccCCCCccccCCCcchhHH-HHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccc--cccceec
Q 003769 287 LKWVAEFWANYYGGDEQKRNNNNYCVEE-YVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLEN--MWKLHPF 363 (796)
Q Consensus 287 lh~l~~~~~~~~G~~~g~~~~~~~~~~d-~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLer--rf~lq~V 363 (796)
++.+.+.+.. ..+ .++ .+...|..++.++..++.+.+||+|+..+ ..||+|.| ||+. .+
T Consensus 280 id~l~~~r~~----~~~--------~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~-----~ld~al~r~gRfd~-~i 341 (733)
T TIGR01243 280 IDAIAPKREE----VTG--------EVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPD-----ALDPALRRPGRFDR-EI 341 (733)
T ss_pred hhhhcccccC----Ccc--------hHHHHHHHHHHHHhhccccCCCEEEEeecCChh-----hcCHHHhCchhccE-EE
Confidence 9999876421 111 121 22222444443332478899999998653 35899987 6643 34
Q ss_pred ccCCCC
Q 003769 364 TIPVGS 369 (796)
Q Consensus 364 ~vp~~~ 369 (796)
.++.|+
T Consensus 342 ~i~~P~ 347 (733)
T TIGR01243 342 VIRVPD 347 (733)
T ss_pred EeCCcC
Confidence 454443
No 13
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.72 E-value=1.8e-17 Score=186.60 Aligned_cols=201 Identities=11% Similarity=0.168 Sum_probs=137.5
Q ss_pred HHHHHHHHhhcCCCCCCcchHHHHHHHHHHHh----hc--------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCC
Q 003769 567 NLKVLSDALERKAVVPWQKEIMPEIARTILEC----RS--------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSH 634 (796)
Q Consensus 567 ~L~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~----rs--------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~ 634 (796)
..+.+...|.+. |+||++|+..++.+|... +. ..+...+||.||+| +|||.+|++||+.+ +
T Consensus 61 ~p~~i~~~L~~~--ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~G--tGKT~lAr~lA~~l-~-- 133 (412)
T PRK05342 61 TPKEIKAHLDQY--VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTG--SGKTLLAQTLARIL-D-- 133 (412)
T ss_pred CHHHHHHHHhhH--eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCC--CCHHHHHHHHHHHh-C--
Confidence 456789999999 999999999999988432 22 12458899999999 99999999999887 3
Q ss_pred CCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHH-------HHhCCCEEEEEcccccCCCChH-----------
Q 003769 635 SNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLA-------LNENPHRVFFMEDLDDHKVDSC----------- 696 (796)
Q Consensus 635 ~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~ea-------vr~~P~~Vvl~deieka~~~~~----------- 696 (796)
..|+++|++.+. + .+|.|.+....|+.. +.+.++.|||||||||+ ++.
T Consensus 134 -~pf~~id~~~l~-~----------~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl--~~~~~~~~~~~d~s 199 (412)
T PRK05342 134 -VPFAIADATTLT-E----------AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKI--ARKSENPSITRDVS 199 (412)
T ss_pred -CCceecchhhcc-c----------CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhh--ccccCCCCcCCCcc
Confidence 459999998652 1 245555433344443 34568899999999999 651
Q ss_pred --HHHHHHHHHHHcce--EecCCCceecCCcEEEEeeCCC-CC-CCCCcCCCCCCCCCcccCCCCCccceeecccccccc
Q 003769 697 --YCQKGLKQAIENGC--IALADGEIVPLKDSIIIFSCDS-LD-SVPSACSHQNKRPKTEEKDDDCNLSLDLNIAIEDED 770 (796)
Q Consensus 697 --~v~~~l~q~~d~G~--l~d~~G~~v~~~n~IiilTsn~-~~-~~s~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 770 (796)
.||+.||++||.+. ++|..|++.+|.++|+|+|||. |- ..+-.+....+.++ .+....+|.-+.....+.
T Consensus 200 ~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r----~~~~~~gf~~~~~~~~~~ 275 (412)
T PRK05342 200 GEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQR----LGKKGIGFGAEVKSKKEK 275 (412)
T ss_pred cHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHH----HhhcccCCcccccccccc
Confidence 39999999998543 4778899999999999999998 42 11111111101111 012456665432211110
Q ss_pred ---c---ccc-cc-------chhhhhhcceEEEeec
Q 003769 771 ---D---RSV-GD-------IRNILESVDKQIIFKT 792 (796)
Q Consensus 771 ---~---~~~-~~-------~~~~~~~vd~~~~f~~ 792 (796)
+ +.+ .+ .|||+||+|.++.|+-
T Consensus 276 ~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~ 311 (412)
T PRK05342 276 RTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEE 311 (412)
T ss_pred chhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCC
Confidence 1 111 11 3999999999999963
No 14
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.1e-15 Score=172.35 Aligned_cols=132 Identities=14% Similarity=0.217 Sum_probs=107.3
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
-+++++++||||+|||.+++++|++- +++++.++...++.+|-||.|..|+++++++.+. ..|.|+|||
T Consensus 217 ~prg~Ll~gppg~Gkt~l~~aVa~e~----------~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~-~~psii~Id 285 (693)
T KOG0730|consen 217 PPRGLLLYGPPGTGKTFLVRAVANEY----------GAFLFLINGPELISKFPGETESNLRKAFAEALKF-QVPSIIFID 285 (693)
T ss_pred CCCCccccCCCCCChHHHHHHHHHHh----------CceeEecccHHHHHhcccchHHHHHHHHHHHhcc-CCCeeEeHH
Confidence 56899999999999999999999873 5789999999999999999999999999999984 239999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccc-cccceecc
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLEN-MWKLHPFT 364 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLer-rf~lq~V~ 364 (796)
||+.|++.+. +..+ ..+..+.+|..|+.++..++.+.||++|+.. -..||+|-| ||+ +-|.
T Consensus 286 Eld~l~p~r~----~~~~--------~e~Rv~sqlltL~dg~~~~~~vivl~atnrp-----~sld~alRRgRfd-~ev~ 347 (693)
T KOG0730|consen 286 ELDALCPKRE----GADD--------VESRVVSQLLTLLDGLKPDAKVIVLAATNRP-----DSLDPALRRGRFD-REVE 347 (693)
T ss_pred hHhhhCCccc----ccch--------HHHHHHHHHHHHHhhCcCcCcEEEEEecCCc-----cccChhhhcCCCc-ceee
Confidence 9999998753 1111 2445566677888777667889999999743 368999988 886 5565
Q ss_pred cC
Q 003769 365 IP 366 (796)
Q Consensus 365 vp 366 (796)
|-
T Consensus 348 Ig 349 (693)
T KOG0730|consen 348 IG 349 (693)
T ss_pred ec
Confidence 53
No 15
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.9e-15 Score=172.72 Aligned_cols=147 Identities=14% Similarity=0.204 Sum_probs=118.3
Q ss_pred ChHHHHHHHHH-------Hhh---ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHH
Q 003769 192 DSDDVMSVLNA-------LIN---KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEV 261 (796)
Q Consensus 192 r~~ei~~vi~~-------L~r---~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~ 261 (796)
-..||...|+. ++. ++..++|+||||||||-+|+++|... ...|+++..-.|++||.||.
T Consensus 680 vK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc----------sL~FlSVKGPELLNMYVGqS 749 (953)
T KOG0736|consen 680 VKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGPELLNMYVGQS 749 (953)
T ss_pred HHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc----------eeeEEeecCHHHHHHHhcch
Confidence 45666666665 333 47788899999999999999999875 46899999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC--CCCcEEEEEec
Q 003769 262 EQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG--ESERVWIMGIA 339 (796)
Q Consensus 262 E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~--~~G~l~~IGat 339 (796)
|+.++++|+.+++ ..|||||+|||+.|++.|++. |+++| .||..|..|.+=+.+|. ..-.+.+||||
T Consensus 750 E~NVR~VFerAR~--A~PCVIFFDELDSlAP~RG~s-GDSGG--------VMDRVVSQLLAELDgls~~~s~~VFViGAT 818 (953)
T KOG0736|consen 750 EENVREVFERARS--AAPCVIFFDELDSLAPNRGRS-GDSGG--------VMDRVVSQLLAELDGLSDSSSQDVFVIGAT 818 (953)
T ss_pred HHHHHHHHHHhhc--cCCeEEEeccccccCccCCCC-CCccc--------cHHHHHHHHHHHhhcccCCCCCceEEEecC
Confidence 9999999999998 579999999999999998654 66666 89999886655444442 24569999999
Q ss_pred ChHHHHHhhhcCccccc--cccceeccc
Q 003769 340 SFQTYTRCKAGHPSLEN--MWKLHPFTI 365 (796)
Q Consensus 340 T~~ey~k~~~~dpaLer--rf~lq~V~v 365 (796)
+.-. -.||||-| ||+. .|.|
T Consensus 819 NRPD-----LLDpALLRPGRFDK-Lvyv 840 (953)
T KOG0736|consen 819 NRPD-----LLDPALLRPGRFDK-LVYV 840 (953)
T ss_pred CCcc-----ccChhhcCCCccce-eEEe
Confidence 9653 37999998 7763 4444
No 16
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=6.3e-14 Score=151.07 Aligned_cols=140 Identities=11% Similarity=0.113 Sum_probs=108.2
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
-++.++|+||||||||-+|+++|.+. ++.|+.+..+.|+.+|.||--.=++++|+.++. +.|+|+|||
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T----------~AtFIrvvgSElVqKYiGEGaRlVRelF~lAre--kaPsIIFiD 251 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQT----------DATFIRVVGSELVQKYIGEGARLVRELFELARE--KAPSIIFID 251 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhcc----------CceEEEeccHHHHHHHhccchHHHHHHHHHHhh--cCCeEEEEe
Confidence 67899999999999999999999874 689999999999999999999999999999998 689999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccc--cccceec
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLEN--MWKLHPF 363 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLer--rf~lq~V 363 (796)
||+.+...|-.. |. +| + .=+...-+||-.=+.+.+.+|++.+|+||+.-. -.||||-| ||+ ..|
T Consensus 252 EIDAIg~kR~d~-~t-~g--D----rEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D-----~LDPALLRPGR~D-RkI 317 (406)
T COG1222 252 EIDAIGAKRFDS-GT-SG--D----REVQRTMLELLNQLDGFDPRGNVKVIMATNRPD-----ILDPALLRPGRFD-RKI 317 (406)
T ss_pred chhhhhcccccC-CC-Cc--h----HHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc-----ccChhhcCCCccc-cee
Confidence 999999887432 11 11 0 023344343333333444699999999998532 47999998 765 456
Q ss_pred ccCCCCcc
Q 003769 364 TIPVGSLS 371 (796)
Q Consensus 364 ~vp~~~l~ 371 (796)
.+|-|+..
T Consensus 318 EfplPd~~ 325 (406)
T COG1222 318 EFPLPDEE 325 (406)
T ss_pred ecCCCCHH
Confidence 66655544
No 17
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.8e-13 Score=152.77 Aligned_cols=148 Identities=14% Similarity=0.231 Sum_probs=118.5
Q ss_pred hHHHHHHHHHHh------h----ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHH
Q 003769 193 SDDVMSVLNALI------N----KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVE 262 (796)
Q Consensus 193 ~~ei~~vi~~L~------r----~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E 262 (796)
..|+..|++.|- | -++.++|+||||+|||.+++++|.. .++.|+....+.|-.+|.|.-.
T Consensus 313 K~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE----------A~VPFF~~sGSEFdEm~VGvGA 382 (752)
T KOG0734|consen 313 KQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE----------AGVPFFYASGSEFDEMFVGVGA 382 (752)
T ss_pred HHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc----------cCCCeEeccccchhhhhhcccH
Confidence 467888888874 2 4589999999999999999999864 2567999988888889999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC---CCCcEEEEEec
Q 003769 263 QKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG---ESERVWIMGIA 339 (796)
Q Consensus 263 ~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~---~~G~l~~IGat 339 (796)
.|+++||..+++ ..|||+|||||+.+-+.|.. . .+-+++..|..|+..|+ .+-.|.+||||
T Consensus 383 rRVRdLF~aAk~--~APcIIFIDEiDavG~kR~~----~----------~~~y~kqTlNQLLvEmDGF~qNeGiIvigAT 446 (752)
T KOG0734|consen 383 RRVRDLFAAAKA--RAPCIIFIDEIDAVGGKRNP----S----------DQHYAKQTLNQLLVEMDGFKQNEGIIVIGAT 446 (752)
T ss_pred HHHHHHHHHHHh--cCCeEEEEechhhhcccCCc----c----------HHHHHHHHHHHHHHHhcCcCcCCceEEEecc
Confidence 999999999998 57999999999998766421 1 33478887888887775 24459999999
Q ss_pred ChHHHHHhhhcCccccc--cccceecccCCCCccc
Q 003769 340 SFQTYTRCKAGHPSLEN--MWKLHPFTIPVGSLSL 372 (796)
Q Consensus 340 T~~ey~k~~~~dpaLer--rf~lq~V~vp~~~l~~ 372 (796)
++-+ ..|+||-| ||+. .|.||.|.+.-
T Consensus 447 Nfpe-----~LD~AL~RPGRFD~-~v~Vp~PDv~G 475 (752)
T KOG0734|consen 447 NFPE-----ALDKALTRPGRFDR-HVTVPLPDVRG 475 (752)
T ss_pred CChh-----hhhHHhcCCCccce-eEecCCCCccc
Confidence 9865 46899998 8884 57788776553
No 18
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2.4e-12 Score=143.75 Aligned_cols=137 Identities=13% Similarity=0.170 Sum_probs=94.7
Q ss_pred HHHHHhh-ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhcc-
Q 003769 199 VLNALIN-KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYM- 276 (796)
Q Consensus 199 vi~~L~r-~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~- 276 (796)
+++-|.- .-+.++|+||||||||-+++.+...+...+ |.. ++...+.++|.||.|+.+++|+..+++-.
T Consensus 247 vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNAre-PKI--------VNGPeIL~KYVGeSE~NvR~LFaDAEeE~r 317 (744)
T KOG0741|consen 247 VIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNARE-PKI--------VNGPEILNKYVGESEENVRKLFADAEEEQR 317 (744)
T ss_pred HHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCC-Ccc--------cCcHHHHHHhhcccHHHHHHHHHhHHHHHH
Confidence 3445555 667999999999999999999998775443 433 23345677999999999999998887521
Q ss_pred ----C-CCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC---CCCcEEEEEecChHHHHHhh
Q 003769 277 ----G-RGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG---ESERVWIMGIASFQTYTRCK 348 (796)
Q Consensus 277 ----~-~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~---~~G~l~~IGatT~~ey~k~~ 348 (796)
+ +=-|+++|||+.++..| |+..| +.| .-|..+ ..||..|+ .=..+-+||-|+....
T Consensus 318 ~~g~~SgLHIIIFDEiDAICKqR----GS~~g--~TG---VhD~VV---NQLLsKmDGVeqLNNILVIGMTNR~Dl---- 381 (744)
T KOG0741|consen 318 RLGANSGLHIIIFDEIDAICKQR----GSMAG--STG---VHDTVV---NQLLSKMDGVEQLNNILVIGMTNRKDL---- 381 (744)
T ss_pred hhCccCCceEEEehhhHHHHHhc----CCCCC--CCC---ccHHHH---HHHHHhcccHHhhhcEEEEeccCchhh----
Confidence 1 22488899999999987 43322 112 223332 24665443 2246999999996543
Q ss_pred hcCccccc--cccce
Q 003769 349 AGHPSLEN--MWKLH 361 (796)
Q Consensus 349 ~~dpaLer--rf~lq 361 (796)
.|-||-| ||+.|
T Consensus 382 -IDEALLRPGRlEVq 395 (744)
T KOG0741|consen 382 -IDEALLRPGRLEVQ 395 (744)
T ss_pred -HHHHhcCCCceEEE
Confidence 5778887 77654
No 19
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=2.9e-13 Score=155.13 Aligned_cols=136 Identities=13% Similarity=0.209 Sum_probs=111.1
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
.++.++|+||||||||++|+++|..- +..|+++....|..+|.||.|.-++++|+.+++. .|+|+|+|
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne~----------~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~--aP~IiFfD 534 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANEA----------GMNFLSVKGPELFSKYVGESERAIREVFRKARQV--APCIIFFD 534 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhhh----------cCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhc--CCeEEehh
Confidence 67899999999999999999999863 5789999999999999999999999999999984 67999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC---CCCcEEEEEecChHHHHHhhhcCccccc--cccc
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG---ESERVWIMGIASFQTYTRCKAGHPSLEN--MWKL 360 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~---~~G~l~~IGatT~~ey~k~~~~dpaLer--rf~l 360 (796)
||+.+++.|+ |++.| +.|+. |..||..|+ ....+.+||||+.. -..||||-| ||+
T Consensus 535 EiDsi~~~R~---g~~~~--------v~~RV---lsqLLtEmDG~e~~k~V~ViAATNRp-----d~ID~ALlRPGRlD- 594 (693)
T KOG0730|consen 535 EIDALAGSRG---GSSSG--------VTDRV---LSQLLTEMDGLEALKNVLVIAATNRP-----DMIDPALLRPGRLD- 594 (693)
T ss_pred hHHhHhhccC---CCccc--------hHHHH---HHHHHHHcccccccCcEEEEeccCCh-----hhcCHHHcCCcccc-
Confidence 9999999984 32222 55665 446665553 46679999999854 268999999 987
Q ss_pred eecccCCCCcccc
Q 003769 361 HPFTIPVGSLSLS 373 (796)
Q Consensus 361 q~V~vp~~~l~~s 373 (796)
+.+.||-|.+.-+
T Consensus 595 ~iiyVplPD~~aR 607 (693)
T KOG0730|consen 595 RIIYVPLPDLEAR 607 (693)
T ss_pred eeEeecCccHHHH
Confidence 6777877665443
No 20
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.41 E-value=8.2e-13 Score=160.50 Aligned_cols=154 Identities=20% Similarity=0.273 Sum_probs=112.9
Q ss_pred HHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHhhc--cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEec
Q 003769 565 DENLKVLSDALERKAVVPWQKEIMPEIARTILECRS--KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLS 642 (796)
Q Consensus 565 ~e~L~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~rs--~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~d 642 (796)
..+++.+.+.|.+. ++||+++...|..-+...+. ......+||.||+| +|||.+|++||+.+ + ..|++++
T Consensus 308 ~~~~~~~~~~l~~~--~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG--~GKT~lAk~iA~~l-~---~~~~~i~ 379 (775)
T TIGR00763 308 NLDLKRAKEILDED--HYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPG--VGKTSLGKSIAKAL-N---RKFVRFS 379 (775)
T ss_pred hhhHHHHHHHhhhh--cCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCC--CCHHHHHHHHHHHh-c---CCeEEEe
Confidence 45789999999999 99999999999885543332 21223799999999 99999999999998 3 4599998
Q ss_pred CCCCccccccccccCCCCCCCCC--Cch-hhHHHHHHhCCCEEEEEcccccCCCChHH----HHHHHHHHHHc---ceEe
Q 003769 643 SSQSRQDDCRTKKRSRDVELGCC--SYI-ERLGLALNENPHRVFFMEDLDDHKVDSCY----CQKGLKQAIEN---GCIA 712 (796)
Q Consensus 643 ms~~~~~~~~~~k~~~~~~~~~~--~~~-~~L~eavr~~P~~Vvl~deieka~~~~~~----v~~~l~q~~d~---G~l~ 712 (796)
++... +... .+.. ...|.|. +++ +.|.++.+.+| |||||||||+ ++ . ..+.|++++|. +.++
T Consensus 380 ~~~~~-~~~~-i~g~-~~~~~g~~~g~i~~~l~~~~~~~~--villDEidk~--~~-~~~~~~~~aLl~~ld~~~~~~f~ 451 (775)
T TIGR00763 380 LGGVR-DEAE-IRGH-RRTYVGAMPGRIIQGLKKAKTKNP--LFLLDEIDKI--GS-SFRGDPASALLEVLDPEQNNAFS 451 (775)
T ss_pred CCCcc-cHHH-HcCC-CCceeCCCCchHHHHHHHhCcCCC--EEEEechhhc--CC-ccCCCHHHHHHHhcCHHhcCccc
Confidence 87431 1110 0110 1224433 222 34555555666 9999999999 65 4 45899999995 7888
Q ss_pred cCC-CceecCCcEEEEeeCCCCC
Q 003769 713 LAD-GEIVPLKDSIIIFSCDSLD 734 (796)
Q Consensus 713 d~~-G~~v~~~n~IiilTsn~~~ 734 (796)
|.. |..+||+++|||+|+|..+
T Consensus 452 d~~~~~~~d~s~v~~I~TtN~~~ 474 (775)
T TIGR00763 452 DHYLDVPFDLSKVIFIATANSID 474 (775)
T ss_pred cccCCceeccCCEEEEEecCCch
Confidence 875 7899999999999999753
No 21
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=5.2e-13 Score=144.83 Aligned_cols=135 Identities=13% Similarity=0.205 Sum_probs=100.1
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
-=+.++++||||+|||.+++++|..- +..|+.++.+.|.++||||.|+-++=||+.++.+ .|.++|||
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATEc----------~tTFFNVSsstltSKwRGeSEKlvRlLFemARfy--APStIFiD 311 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVATEC----------GTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFY--APSTIFID 311 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHHhh----------cCeEEEechhhhhhhhccchHHHHHHHHHHHHHh--CCceeehh
Confidence 44789999999999999999999863 6899999999999999999999999999999985 68999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC---CCCc-EEEEEecChHHHHHhhhcCccccccccce
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG---ESER-VWIMGIASFQTYTRCKAGHPSLENMWKLH 361 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~---~~G~-l~~IGatT~~ey~k~~~~dpaLerrf~lq 361 (796)
||+.|+..| |++.- .++-...-.||.-.+.+++ ++.+ +.|++||++ .| +.|-||-|||+.
T Consensus 312 EIDslcs~R----G~s~E------HEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~-PW----diDEAlrRRlEK- 375 (491)
T KOG0738|consen 312 EIDSLCSQR----GGSSE------HEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNF-PW----DIDEALRRRLEK- 375 (491)
T ss_pred hHHHHHhcC----CCccc------hhHHHHHHHHHHHHhhccccccccceeEEEEeccCC-Cc----chHHHHHHHHhh-
Confidence 999999987 33221 2344443333333334433 1223 555555554 34 689999999984
Q ss_pred ecccCCC
Q 003769 362 PFTIPVG 368 (796)
Q Consensus 362 ~V~vp~~ 368 (796)
.+.||=|
T Consensus 376 RIyIPLP 382 (491)
T KOG0738|consen 376 RIYIPLP 382 (491)
T ss_pred heeeeCC
Confidence 5555544
No 22
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.34 E-value=2.2e-12 Score=141.29 Aligned_cols=106 Identities=17% Similarity=0.194 Sum_probs=82.1
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhcc--CCCEEEE
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYM--GRGIVLY 283 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~--~~~~ILf 283 (796)
.-.+.||+||||||||++++.||+.. +..|..++. ..+. .. .+++++++.+... ++..|||
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~~----------~~~f~~~sA--v~~g-vk----dlr~i~e~a~~~~~~gr~tiLf 109 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGTT----------NAAFEALSA--VTSG-VK----DLREIIEEARKNRLLGRRTILF 109 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHhh----------CCceEEecc--cccc-HH----HHHHHHHHHHHHHhcCCceEEE
Confidence 67899999999999999999999965 467888874 3331 22 3666666665432 5689999
Q ss_pred EcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCcccccc
Q 003769 284 LGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLENM 357 (796)
Q Consensus 284 IDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLerr 357 (796)
|||||.+.... + |+ |-+.+ ++|.|.+|||||.+.|. +.+|||-+|
T Consensus 110 lDEIHRfnK~Q--------Q----------D~----lLp~v----E~G~iilIGATTENPsF---~ln~ALlSR 154 (436)
T COG2256 110 LDEIHRFNKAQ--------Q----------DA----LLPHV----ENGTIILIGATTENPSF---ELNPALLSR 154 (436)
T ss_pred EehhhhcChhh--------h----------hh----hhhhh----cCCeEEEEeccCCCCCe---eecHHHhhh
Confidence 99999998762 1 33 44555 69999999999999984 899999876
No 23
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.34 E-value=6.1e-12 Score=144.84 Aligned_cols=146 Identities=11% Similarity=0.183 Sum_probs=100.7
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhcc--CCCEEEE
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYM--GRGIVLY 283 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~--~~~~ILf 283 (796)
.+++++|+||||||||++++++|..+...-.-.......|+.++...+..+|.|+.+.+++.+++.++... +.++|||
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIf 294 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVF 294 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEE
Confidence 46789999999999999999999987532110011123456666677888999999999999999887531 4689999
Q ss_pred EcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC---CCCcEEEEEecChHHHHHhhhcCccccc--cc
Q 003769 284 LGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG---ESERVWIMGIASFQTYTRCKAGHPSLEN--MW 358 (796)
Q Consensus 284 IDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~---~~G~l~~IGatT~~ey~k~~~~dpaLer--rf 358 (796)
|||++.+++.|.. |.+. .++.. + +..|+..++ ..+.+.+||||+..+ ..||||-| ||
T Consensus 295 IDEiD~L~~~R~~--~~s~---------d~e~~-i-l~~LL~~LDgl~~~~~ViVI~ATN~~d-----~LDpALlRpGRf 356 (512)
T TIGR03689 295 FDEMDSIFRTRGS--GVSS---------DVETT-V-VPQLLSELDGVESLDNVIVIGASNRED-----MIDPAILRPGRL 356 (512)
T ss_pred EehhhhhhcccCC--Cccc---------hHHHH-H-HHHHHHHhcccccCCceEEEeccCChh-----hCCHhhcCcccc
Confidence 9999999987521 1111 12211 1 334544332 357799999998754 36999999 88
Q ss_pred cceecccCCCCc
Q 003769 359 KLHPFTIPVGSL 370 (796)
Q Consensus 359 ~lq~V~vp~~~l 370 (796)
+. .|.+|.|+.
T Consensus 357 D~-~I~~~~Pd~ 367 (512)
T TIGR03689 357 DV-KIRIERPDA 367 (512)
T ss_pred ce-EEEeCCCCH
Confidence 75 366665553
No 24
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=4.6e-12 Score=146.76 Aligned_cols=137 Identities=15% Similarity=0.160 Sum_probs=105.6
Q ss_pred CceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEcch
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLGDL 287 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfIDEl 287 (796)
..++|+||||||||.+++++|... +.+|++++.+.+.++|.||.|+++++++..+++ ..++||||||+
T Consensus 277 ~giLl~GpPGtGKT~lAkava~~~----------~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~--~~p~iiFiDEi 344 (494)
T COG0464 277 KGVLLYGPPGTGKTLLAKAVALES----------RSRFISVKGSELLSKWVGESEKNIRELFEKARK--LAPSIIFIDEI 344 (494)
T ss_pred CeeEEECCCCCCHHHHHHHHHhhC----------CCeEEEeeCHHHhccccchHHHHHHHHHHHHHc--CCCcEEEEEch
Confidence 468899999999999999999842 578999999999999999999999999999997 57999999999
Q ss_pred hhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccc--cccceeccc
Q 003769 288 KWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLEN--MWKLHPFTI 365 (796)
Q Consensus 288 h~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLer--rf~lq~V~v 365 (796)
+.++..+. .++. .+.+.++.+|...+.++.....+.+||||+.-. ..|||+-| ||+ -.+.|
T Consensus 345 Ds~~~~r~----~~~~-------~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~-----~ld~a~lR~gRfd-~~i~v 407 (494)
T COG0464 345 DSLASGRG----PSED-------GSGRRVVGQLLTELDGIEKAEGVLVIAATNRPD-----DLDPALLRPGRFD-RLIYV 407 (494)
T ss_pred hhhhccCC----CCCc-------hHHHHHHHHHHHHhcCCCccCceEEEecCCCcc-----ccCHhhcccCccc-eEeec
Confidence 99998763 2221 023344433554443333345588999998653 57999999 986 46677
Q ss_pred CCCCcccc
Q 003769 366 PVGSLSLS 373 (796)
Q Consensus 366 p~~~l~~s 373 (796)
|.|+...+
T Consensus 408 ~~pd~~~r 415 (494)
T COG0464 408 PLPDLEER 415 (494)
T ss_pred CCCCHHHH
Confidence 77766554
No 25
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=3.8e-12 Score=134.08 Aligned_cols=134 Identities=11% Similarity=0.221 Sum_probs=101.7
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEcc
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLGD 286 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfIDE 286 (796)
-+.++|+||||+||+-+++++|... |-.|++++-+.|++++-||.|.-++.|++.+++ ++|.|+||||
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEA----------nSTFFSvSSSDLvSKWmGESEkLVknLFemARe--~kPSIIFiDE 233 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEA----------NSTFFSVSSSDLVSKWMGESEKLVKNLFEMARE--NKPSIIFIDE 233 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhc----------CCceEEeehHHHHHHHhccHHHHHHHHHHHHHh--cCCcEEEeeh
Confidence 4689999999999999999999863 578999999999999999999999999999998 6899999999
Q ss_pred hhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC-CCCcEEEEEecChHHHHHhhhcCccccccccceeccc
Q 003769 287 LKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG-ESERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTI 365 (796)
Q Consensus 287 lh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~-~~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~v 365 (796)
|+.+++.|. + .+. ++.+..-.|+.--+++.| .+..+-++|||+.. | ..|.|+-|||+ ..+.|
T Consensus 234 iDslcg~r~---e-nEs-------easRRIKTEfLVQMqGVG~d~~gvLVLgATNiP-w----~LDsAIRRRFe-kRIYI 296 (439)
T KOG0739|consen 234 IDSLCGSRS---E-NES-------EASRRIKTEFLVQMQGVGNDNDGVLVLGATNIP-W----VLDSAIRRRFE-KRIYI 296 (439)
T ss_pred hhhhccCCC---C-Cch-------HHHHHHHHHHHHhhhccccCCCceEEEecCCCc-h----hHHHHHHHHhh-cceec
Confidence 999998853 1 121 244443222222223444 23448889998753 2 57889999997 46666
Q ss_pred CCCC
Q 003769 366 PVGS 369 (796)
Q Consensus 366 p~~~ 369 (796)
|-|.
T Consensus 297 PLPe 300 (439)
T KOG0739|consen 297 PLPE 300 (439)
T ss_pred cCCc
Confidence 6543
No 26
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.31 E-value=6.4e-12 Score=137.62 Aligned_cols=135 Identities=14% Similarity=0.053 Sum_probs=100.0
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhcc---CCCEEE
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYM---GRGIVL 282 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~---~~~~IL 282 (796)
.++-++|+||||||||.+++++|..+ |..++.++.+.|.++|.||-|+++++++++++... ++++||
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~el----------g~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVL 216 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKM----------GIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCL 216 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHc----------CCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEE
Confidence 55667789999999999999999976 57899999999999999999999999999987521 579999
Q ss_pred EEcchhhhhhhhcccCCCCccccCCCcchhHHHH-HHHHHHHhhhc------------CCCCcEEEEEecChHHHHHhhh
Q 003769 283 YLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYV-VMEIKRLVFEI------------GESERVWIMGIASFQTYTRCKA 349 (796)
Q Consensus 283 fIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~-~~eLk~L~~~~------------~~~G~l~~IGatT~~ey~k~~~ 349 (796)
|||||+.+++.+ |++++ ...+.. +.+|-.++.+. ...+++.+|+||+- .-.
T Consensus 217 FIDEIDA~~g~r----~~~~~-------tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNr-----pd~ 280 (413)
T PLN00020 217 FINDLDAGAGRF----GTTQY-------TVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGND-----FST 280 (413)
T ss_pred EEehhhhcCCCC----CCCCc-------chHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCC-----ccc
Confidence 999999999875 32221 122232 23344443210 12566889999863 225
Q ss_pred cCccccc--cccceecccCC
Q 003769 350 GHPSLEN--MWKLHPFTIPV 367 (796)
Q Consensus 350 ~dpaLer--rf~lq~V~vp~ 367 (796)
.||+|-| ||+. -+.+|+
T Consensus 281 LDpALlRpGRfDk-~i~lPd 299 (413)
T PLN00020 281 LYAPLIRDGRMEK-FYWAPT 299 (413)
T ss_pred CCHhHcCCCCCCc-eeCCCC
Confidence 7999999 8875 355565
No 27
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.31 E-value=2e-11 Score=114.53 Aligned_cols=123 Identities=13% Similarity=0.150 Sum_probs=90.0
Q ss_pred eEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEcchhh
Q 003769 210 TVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLGDLKW 289 (796)
Q Consensus 210 ~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfIDElh~ 289 (796)
++|+||||+|||++|+.+|+.+ +.+++.++...+.+.+.++.++++.++++.++.. ..++||||||+|.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l----------~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~vl~iDe~d~ 69 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL----------GFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKS-AKPCVLFIDEIDK 69 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT----------TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHT-STSEEEEEETGGG
T ss_pred CEEECcCCCCeeHHHHHHHhhc----------cccccccccccccccccccccccccccccccccc-ccceeeeeccchh
Confidence 5899999999999999999986 4789999999999889999999999999999874 2389999999999
Q ss_pred hhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC-CCCcEEEEEecChHHHHHhhhcCcccc-cccc
Q 003769 290 VAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG-ESERVWIMGIASFQTYTRCKAGHPSLE-NMWK 359 (796)
Q Consensus 290 l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~-~~G~l~~IGatT~~ey~k~~~~dpaLe-rrf~ 359 (796)
+.+... ..... ........ |..++.... ..+.+.+|++|+. + -..+|+|. .||+
T Consensus 70 l~~~~~---~~~~~-------~~~~~~~~-L~~~l~~~~~~~~~~~vI~ttn~--~---~~i~~~l~~~rf~ 125 (132)
T PF00004_consen 70 LFPKSQ---PSSSS-------FEQRLLNQ-LLSLLDNPSSKNSRVIVIATTNS--P---DKIDPALLRSRFD 125 (132)
T ss_dssp TSHHCS---TSSSH-------HHHHHHHH-HHHHHHTTTTTSSSEEEEEEESS--G---GGSCHHHHSTTSE
T ss_pred cccccc---ccccc-------ccccccce-eeecccccccccccceeEEeeCC--h---hhCCHhHHhCCCc
Confidence 998720 01110 01111121 333332221 2356999999986 1 25788888 7775
No 28
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1e-11 Score=140.85 Aligned_cols=123 Identities=14% Similarity=0.197 Sum_probs=100.0
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
.+..++|+||||||||-+++++|..- +..|+++....|++||.||.|.-++.+|..++. ..|||+|+|
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa----------g~NFisVKGPELlNkYVGESErAVR~vFqRAR~--saPCVIFFD 611 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA----------GANFISVKGPELLNKYVGESERAVRQVFQRARA--SAPCVIFFD 611 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc----------cCceEeecCHHHHHHHhhhHHHHHHHHHHHhhc--CCCeEEEec
Confidence 67899999999999999999999863 578999999999999999999999999999997 579999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC---CCCcEEEEEecChHHHHHhhhcCccccc--ccc
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG---ESERVWIMGIASFQTYTRCKAGHPSLEN--MWK 359 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~---~~G~l~~IGatT~~ey~k~~~~dpaLer--rf~ 359 (796)
|++.|++.|+. ++++. +...+|. ||..|+ +|-.+.+||||+.-. -.|||+-| ||+
T Consensus 612 EiDaL~p~R~~--~~s~~--------s~RvvNq----LLtElDGl~~R~gV~viaATNRPD-----iIDpAiLRPGRlD 671 (802)
T KOG0733|consen 612 EIDALVPRRSD--EGSSV--------SSRVVNQ----LLTELDGLEERRGVYVIAATNRPD-----IIDPAILRPGRLD 671 (802)
T ss_pred chhhcCcccCC--CCchh--------HHHHHHH----HHHHhcccccccceEEEeecCCCc-----ccchhhcCCCccC
Confidence 99999998743 11221 3444444 665543 466699999998543 47899987 665
No 29
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.28 E-value=1.8e-11 Score=137.79 Aligned_cols=138 Identities=12% Similarity=0.129 Sum_probs=101.5
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
.+++++|+||||||||++|+++|.+. +..|+.++.+.+..+|.|+.+..++++++.++. ..++|||||
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~----------~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~--~~p~IlfiD 231 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRVVGSELVQKFIGEGARLVRELFELARE--KAPSIIFID 231 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHh----------CCCEEEeehHHHhHhhccchHHHHHHHHHHHHh--cCCeEEEEe
Confidence 46789999999999999999999875 356899998888889999999999999999887 568999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC---CCCcEEEEEecChHHHHHhhhcCccccc--cccc
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG---ESERVWIMGIASFQTYTRCKAGHPSLEN--MWKL 360 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~---~~G~l~~IGatT~~ey~k~~~~dpaLer--rf~l 360 (796)
|++.+.+.+... + ..+ ..+.... |..|+..++ ..+.+++||||+... ..||+|-| ||+.
T Consensus 232 EiD~l~~~r~~~-~-~~~--------~~~~~~~-l~~lL~~ld~~~~~~~v~VI~aTn~~~-----~ld~allRpgRfd~ 295 (389)
T PRK03992 232 EIDAIAAKRTDS-G-TSG--------DREVQRT-LMQLLAEMDGFDPRGNVKIIAATNRID-----ILDPAILRPGRFDR 295 (389)
T ss_pred chhhhhcccccC-C-CCc--------cHHHHHH-HHHHHHhccccCCCCCEEEEEecCChh-----hCCHHHcCCccCce
Confidence 999999775311 1 010 1111111 334543332 356899999998653 47899987 8864
Q ss_pred eecccCCCCccc
Q 003769 361 HPFTIPVGSLSL 372 (796)
Q Consensus 361 q~V~vp~~~l~~ 372 (796)
.|.+|.|+...
T Consensus 296 -~I~v~~P~~~~ 306 (389)
T PRK03992 296 -IIEVPLPDEEG 306 (389)
T ss_pred -EEEECCCCHHH
Confidence 46777666544
No 30
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.26 E-value=2.5e-11 Score=139.72 Aligned_cols=135 Identities=10% Similarity=0.128 Sum_probs=99.4
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
.+++++|+||||||||.+|+++|... +..++.++.+.+.++|.|+.|.+++++++.++. ..|+|||||
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~----------~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~--~~P~IL~ID 325 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDW----------QLPLLRLDVGKLFGGIVGESESRMRQMIRIAEA--LSPCILWID 325 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEEhHHhcccccChHHHHHHHHHHHHHh--cCCcEEEeh
Confidence 45789999999999999999999975 467999999999999999999999999999887 579999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC-CCCcEEEEEecChHHHHHhhhcCccccc--ccccee
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG-ESERVWIMGIASFQTYTRCKAGHPSLEN--MWKLHP 362 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~-~~G~l~~IGatT~~ey~k~~~~dpaLer--rf~lq~ 362 (796)
|++.+...+. +..++ + .... + +..++.++. ....+.+||||+.-. ..||+|-| ||+. .
T Consensus 326 EID~~~~~~~---~~~d~----~---~~~r--v-l~~lL~~l~~~~~~V~vIaTTN~~~-----~Ld~allR~GRFD~-~ 386 (489)
T CHL00195 326 EIDKAFSNSE---SKGDS----G---TTNR--V-LATFITWLSEKKSPVFVVATANNID-----LLPLEILRKGRFDE-I 386 (489)
T ss_pred hhhhhhcccc---CCCCc----h---HHHH--H-HHHHHHHHhcCCCceEEEEecCChh-----hCCHHHhCCCcCCe-E
Confidence 9999876421 11111 1 1112 1 445555543 255688998887532 57899988 8863 4
Q ss_pred cccCCCCcc
Q 003769 363 FTIPVGSLS 371 (796)
Q Consensus 363 V~vp~~~l~ 371 (796)
+.||-|+..
T Consensus 387 i~v~lP~~~ 395 (489)
T CHL00195 387 FFLDLPSLE 395 (489)
T ss_pred EEeCCcCHH
Confidence 445544433
No 31
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.25 E-value=1.6e-11 Score=127.47 Aligned_cols=124 Identities=14% Similarity=0.182 Sum_probs=97.6
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
.++|++++||||||||.++++||... +..++.+....|+..|.|+-.+++.++.+.+++ ..|||+|||
T Consensus 150 APknVLFyGppGTGKTm~Akalane~----------kvp~l~vkat~liGehVGdgar~Ihely~rA~~--~aPcivFiD 217 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEA----------KVPLLLVKATELIGEHVGDGARRIHELYERARK--AAPCIVFID 217 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhccc----------CCceEEechHHHHHHHhhhHHHHHHHHHHHHHh--cCCeEEEeh
Confidence 67899999999999999999999753 356899999999999999999999999999998 579999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC---CCCcEEEEEecChHHHHHhhhcCcccccccc
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG---ESERVWIMGIASFQTYTRCKAGHPSLENMWK 359 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~---~~G~l~~IGatT~~ey~k~~~~dpaLerrf~ 359 (796)
|++.|.=.|. -.+= +| +..+..| +|++.++ ++-.+..|+||+.-+ ..|||.-+||+
T Consensus 218 E~DAiaLdRr----yQel---RG--DVsEiVN----ALLTelDgi~eneGVvtIaaTN~p~-----~LD~aiRsRFE 276 (368)
T COG1223 218 ELDAIALDRR----YQEL---RG--DVSEIVN----ALLTELDGIKENEGVVTIAATNRPE-----LLDPAIRSRFE 276 (368)
T ss_pred hhhhhhhhhh----HHHh---cc--cHHHHHH----HHHHhccCcccCCceEEEeecCChh-----hcCHHHHhhhh
Confidence 9999986541 0110 11 1344444 4665553 455699999998654 37999999996
No 32
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.24 E-value=3.8e-11 Score=145.48 Aligned_cols=139 Identities=12% Similarity=0.138 Sum_probs=103.5
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
.+++++|+||||||||++++++|... +..|+.++.+.+..+|.|+.|+.++++++.++. ..++|||||
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~----------~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~--~~p~iifiD 553 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATES----------GANFIAVRGPEILSKWVGESEKAIREIFRKARQ--AAPAIIFFD 553 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEehHHHhhcccCcHHHHHHHHHHHHHh--cCCEEEEEE
Confidence 45679999999999999999999864 467999999889999999999999999999987 578999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccc--cccceec
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLEN--MWKLHPF 363 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLer--rf~lq~V 363 (796)
|++.|++.+. +..+ ....+.++.+|...+.++...+.+.+||||+.-. ..|||+-| ||+. .+
T Consensus 554 Eid~l~~~r~----~~~~------~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~-----~ld~allRpgRfd~-~i 617 (733)
T TIGR01243 554 EIDAIAPARG----ARFD------TSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPD-----ILDPALLRPGRFDR-LI 617 (733)
T ss_pred ChhhhhccCC----CCCC------ccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChh-----hCCHhhcCCCccce-EE
Confidence 9999998752 1111 0123333222322222222456799999998643 47999998 8874 56
Q ss_pred ccCCCCccc
Q 003769 364 TIPVGSLSL 372 (796)
Q Consensus 364 ~vp~~~l~~ 372 (796)
.+|.|....
T Consensus 618 ~v~~Pd~~~ 626 (733)
T TIGR01243 618 LVPPPDEEA 626 (733)
T ss_pred EeCCcCHHH
Confidence 777665443
No 33
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.23 E-value=4.8e-11 Score=138.39 Aligned_cols=137 Identities=12% Similarity=0.167 Sum_probs=100.2
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
.+++++|+||||||||++++++|... +..++.++.+.+..++.|+.+.+++++++.++. ..|+|||||
T Consensus 87 ~~~giLL~GppGtGKT~la~alA~~~----------~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~--~~p~Il~iD 154 (495)
T TIGR01241 87 IPKGVLLVGPPGTGKTLLAKAVAGEA----------GVPFFSISGSDFVEMFVGVGASRVRDLFEQAKK--NAPCIIFID 154 (495)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHc----------CCCeeeccHHHHHHHHhcccHHHHHHHHHHHHh--cCCCEEEEe
Confidence 46789999999999999999999763 467899998888888899999999999999987 578999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC---CCCcEEEEEecChHHHHHhhhcCccccc--cccc
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG---ESERVWIMGIASFQTYTRCKAGHPSLEN--MWKL 360 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~---~~G~l~~IGatT~~ey~k~~~~dpaLer--rf~l 360 (796)
|++.+...+.. |.+.+ ....+. . +..|+..|+ .++.+.+||||+..+ ..||+|-| ||+
T Consensus 155 Eid~l~~~r~~--~~~~~------~~~~~~--~-~~~lL~~~d~~~~~~~v~vI~aTn~~~-----~ld~al~r~gRfd- 217 (495)
T TIGR01241 155 EIDAVGRQRGA--GLGGG------NDEREQ--T-LNQLLVEMDGFGTNTGVIVIAATNRPD-----VLDPALLRPGRFD- 217 (495)
T ss_pred chhhhhhcccc--CcCCc------cHHHHH--H-HHHHHhhhccccCCCCeEEEEecCChh-----hcCHHHhcCCcce-
Confidence 99999987531 10000 001111 1 334554442 356699999998643 57899988 786
Q ss_pred eecccCCCCcc
Q 003769 361 HPFTIPVGSLS 371 (796)
Q Consensus 361 q~V~vp~~~l~ 371 (796)
..+.+|.|+..
T Consensus 218 ~~i~i~~Pd~~ 228 (495)
T TIGR01241 218 RQVVVDLPDIK 228 (495)
T ss_pred EEEEcCCCCHH
Confidence 34666665543
No 34
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.22 E-value=4.5e-11 Score=127.45 Aligned_cols=136 Identities=15% Similarity=0.110 Sum_probs=97.6
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEcc
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLGD 286 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfIDE 286 (796)
..|++|+||||||||++++.+|..+..-. .+....++.++.+.+...|.|+.+.+++++++.+. +.||||||
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~---~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~-----~~VL~IDE 113 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMN---VLSKGHLIEVERADLVGEYIGHTAQKTREVIKKAL-----GGVLFIDE 113 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcC---cccCCceEEecHHHhhhhhccchHHHHHHHHHhcc-----CCEEEEec
Confidence 45789999999999999999999875422 23345688899888888999999999998886543 35999999
Q ss_pred hhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC-CCCcEEEEEecChHHHHHhhhcCccccccccceeccc
Q 003769 287 LKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG-ESERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTI 365 (796)
Q Consensus 287 lh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~-~~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~v 365 (796)
+|.|... |...- ..+..+ .|+..|+ .++.+.+|+++++.+...+...+|+|.+||. ..|..
T Consensus 114 ~~~L~~~-----~~~~~--------~~~~i~----~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~-~~i~f 175 (261)
T TIGR02881 114 AYSLARG-----GEKDF--------GKEAID----TLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFP-ISIDF 175 (261)
T ss_pred hhhhccC-----Cccch--------HHHHHH----HHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccc-eEEEE
Confidence 9999642 11110 122322 2343332 2677899988887777677788999999984 34566
Q ss_pred CCC
Q 003769 366 PVG 368 (796)
Q Consensus 366 p~~ 368 (796)
|..
T Consensus 176 ~~~ 178 (261)
T TIGR02881 176 PDY 178 (261)
T ss_pred CCC
Confidence 653
No 35
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.22 E-value=5.5e-11 Score=133.98 Aligned_cols=136 Identities=10% Similarity=0.125 Sum_probs=98.4
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
.+++++|+||||||||++++++|... +..++.+..+.+..+|.|+.+..+++++..++. ..|+|||||
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l----------~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~--~~P~ILfID 245 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHT----------TATFIRVVGSEFVQKYLGEGPRMVRDVFRLARE--NAPSIIFID 245 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEehHHHHHHhcchhHHHHHHHHHHHHh--cCCeEEEEE
Confidence 46889999999999999999999864 356888887778888999999999999999987 578999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC---CCCcEEEEEecChHHHHHhhhcCccccc--cccc
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG---ESERVWIMGIASFQTYTRCKAGHPSLEN--MWKL 360 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~---~~G~l~~IGatT~~ey~k~~~~dpaLer--rf~l 360 (796)
|++.+...+.. ...+ ....+... +..|+..++ ..+.+.+|++|+..+ ..||||-| ||+.
T Consensus 246 EID~i~~~r~~---~~~~-----~d~~~~r~---l~~LL~~ld~~~~~~~v~VI~aTN~~d-----~LDpAllR~GRfd~ 309 (398)
T PTZ00454 246 EVDSIATKRFD---AQTG-----ADREVQRI---LLELLNQMDGFDQTTNVKVIMATNRAD-----TLDPALLRPGRLDR 309 (398)
T ss_pred CHhhhcccccc---ccCC-----ccHHHHHH---HHHHHHHhhccCCCCCEEEEEecCCch-----hCCHHHcCCCcccE
Confidence 99999876421 1111 00112222 334443332 346799999998542 68999988 7763
Q ss_pred eecccCCCCc
Q 003769 361 HPFTIPVGSL 370 (796)
Q Consensus 361 q~V~vp~~~l 370 (796)
.|.+|.|+.
T Consensus 310 -~I~~~~P~~ 318 (398)
T PTZ00454 310 -KIEFPLPDR 318 (398)
T ss_pred -EEEeCCcCH
Confidence 456665543
No 36
>CHL00181 cbbX CbbX; Provisional
Probab=99.21 E-value=5e-11 Score=128.94 Aligned_cols=139 Identities=12% Similarity=0.139 Sum_probs=98.2
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEcc
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLGD 286 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfIDE 286 (796)
..+++|+||||||||++++.+|.....- ..+...+++.++...+++.|.|+.+.+.+++++... +.||||||
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~---g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~-----ggVLfIDE 130 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKL---GYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAM-----GGVLFIDE 130 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc---CCCCCCceEEecHHHHHHHHhccchHHHHHHHHHcc-----CCEEEEEc
Confidence 3468899999999999999999976532 123345689999888888899998888877776532 35999999
Q ss_pred hhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccccccceecccC
Q 003769 287 LKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTIP 366 (796)
Q Consensus 287 lh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp 366 (796)
+|.+.... +... + .-+.... |..++.. .++.+.+|++++.+...+++..+|+|.+||. ..|..|
T Consensus 131 ~~~l~~~~-----~~~~------~-~~e~~~~-L~~~me~--~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~-~~i~F~ 194 (287)
T CHL00181 131 AYYLYKPD-----NERD------Y-GSEAIEI-LLQVMEN--QRDDLVVIFAGYKDRMDKFYESNPGLSSRIA-NHVDFP 194 (287)
T ss_pred cchhccCC-----Cccc------h-HHHHHHH-HHHHHhc--CCCCEEEEEeCCcHHHHHHHhcCHHHHHhCC-ceEEcC
Confidence 99997541 1110 1 1222222 4444421 2577999999988877788888999999985 345556
Q ss_pred CCC
Q 003769 367 VGS 369 (796)
Q Consensus 367 ~~~ 369 (796)
..+
T Consensus 195 ~~t 197 (287)
T CHL00181 195 DYT 197 (287)
T ss_pred CcC
Confidence 543
No 37
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.19 E-value=9.9e-11 Score=126.50 Aligned_cols=139 Identities=13% Similarity=0.134 Sum_probs=98.3
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEcc
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLGD 286 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfIDE 286 (796)
..+++|+||||||||++|+++|+.+..-. .+....++.++...++..|.|+.+.+++++++.+. +.||||||
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g---~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~-----~gvL~iDE 129 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLG---YVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAM-----GGVLFIDE 129 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcC---CcccceEEEecHHHHhHhhcccchHHHHHHHHHcc-----CcEEEEec
Confidence 34788999999999999999999876421 22334688888888887888888888877776543 46999999
Q ss_pred hhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccccccceecccC
Q 003769 287 LKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTIP 366 (796)
Q Consensus 287 lh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp 366 (796)
+++|.+.+ +... + +.+..+. |-.++.. .++++.+|++++.+.-..+...+|+|.+||. ..+.+|
T Consensus 130 i~~L~~~~-----~~~~------~-~~~~~~~-Ll~~le~--~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~-~~i~fp 193 (284)
T TIGR02880 130 AYYLYRPD-----NERD------Y-GQEAIEI-LLQVMEN--QRDDLVVILAGYKDRMDSFFESNPGFSSRVA-HHVDFP 193 (284)
T ss_pred hhhhccCC-----Cccc------h-HHHHHHH-HHHHHhc--CCCCEEEEEeCCcHHHHHHHhhCHHHHhhCC-cEEEeC
Confidence 99996431 1110 0 1222222 3334321 2678999999998877777788999999986 457777
Q ss_pred CCC
Q 003769 367 VGS 369 (796)
Q Consensus 367 ~~~ 369 (796)
+.+
T Consensus 194 ~l~ 196 (284)
T TIGR02880 194 DYS 196 (284)
T ss_pred CcC
Confidence 643
No 38
>CHL00176 ftsH cell division protein; Validated
Probab=99.18 E-value=1.2e-10 Score=138.12 Aligned_cols=152 Identities=13% Similarity=0.146 Sum_probs=107.0
Q ss_pred ChHHHHHHHHHHhh--c--------cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHH
Q 003769 192 DSDDVMSVLNALIN--K--------KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEV 261 (796)
Q Consensus 192 r~~ei~~vi~~L~r--~--------k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~ 261 (796)
-.++++.+++.|.. . +++++|+||||||||++++++|... +..++.++.+.+..++.|..
T Consensus 191 ~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~----------~~p~i~is~s~f~~~~~g~~ 260 (638)
T CHL00176 191 AKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------EVPFFSISGSEFVEMFVGVG 260 (638)
T ss_pred HHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeeeccHHHHHHHhhhhh
Confidence 45666666666553 2 4689999999999999999999864 46789999888888888888
Q ss_pred HHHHHHHHHHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC---CCCcEEEEEe
Q 003769 262 EQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG---ESERVWIMGI 338 (796)
Q Consensus 262 E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~---~~G~l~~IGa 338 (796)
..+++++++.++. ..|+||||||+|.+...+. ...+. +. ...+. . |..|+..++ .+..+.+||+
T Consensus 261 ~~~vr~lF~~A~~--~~P~ILfIDEID~l~~~r~----~~~~~---~~-~e~~~--~-L~~LL~~~dg~~~~~~ViVIaa 327 (638)
T CHL00176 261 AARVRDLFKKAKE--NSPCIVFIDEIDAVGRQRG----AGIGG---GN-DEREQ--T-LNQLLTEMDGFKGNKGVIVIAA 327 (638)
T ss_pred HHHHHHHHHHHhc--CCCcEEEEecchhhhhccc----CCCCC---Cc-HHHHH--H-HHHHHhhhccccCCCCeeEEEe
Confidence 8999999999887 5789999999999987652 11110 00 01111 1 445654442 3456999999
Q ss_pred cChHHHHHhhhcCccccc--cccceecccCCCCccc
Q 003769 339 ASFQTYTRCKAGHPSLEN--MWKLHPFTIPVGSLSL 372 (796)
Q Consensus 339 tT~~ey~k~~~~dpaLer--rf~lq~V~vp~~~l~~ 372 (796)
|+..+ ..||||-| ||+. .|.++.|++..
T Consensus 328 TN~~~-----~LD~ALlRpGRFd~-~I~v~lPd~~~ 357 (638)
T CHL00176 328 TNRVD-----ILDAALLRPGRFDR-QITVSLPDREG 357 (638)
T ss_pred cCchH-----hhhhhhhccccCce-EEEECCCCHHH
Confidence 98754 35789987 6754 45555555443
No 39
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.15 E-value=1.4e-10 Score=131.80 Aligned_cols=135 Identities=8% Similarity=0.081 Sum_probs=96.1
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
.+++++|+||||||||++++++|.++ +..|+.++.+.+..+|.|+.+..++++++.++. +.++|||||
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el----------~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~--~~P~ILfID 283 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANET----------SATFLRVVGSELIQKYLGDGPKLVRELFRVAEE--NAPSIVFID 283 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh----------CCCEEEEecchhhhhhcchHHHHHHHHHHHHHh--CCCcEEeHH
Confidence 35689999999999999999999875 246788888888889999999999999998887 578999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhc---CCCCcEEEEEecChHHHHHhhhcCccccc--cccc
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEI---GESERVWIMGIASFQTYTRCKAGHPSLEN--MWKL 360 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~---~~~G~l~~IGatT~~ey~k~~~~dpaLer--rf~l 360 (796)
|++.+...+... .+++ .. .+... |..|+..+ ...+.+.+|+||+.-+ ..||+|-| ||+
T Consensus 284 EID~l~~kR~~~--~sgg-----~~-e~qr~---ll~LL~~Ldg~~~~~~V~VI~ATNr~d-----~LDpaLlRpGRfd- 346 (438)
T PTZ00361 284 EIDAIGTKRYDA--TSGG-----EK-EIQRT---MLELLNQLDGFDSRGDVKVIMATNRIE-----SLDPALIRPGRID- 346 (438)
T ss_pred HHHHHhccCCCC--CCcc-----cH-HHHHH---HHHHHHHHhhhcccCCeEEEEecCChH-----HhhHHhccCCeeE-
Confidence 999998765210 0111 00 11111 22333222 2356799999998533 34889876 775
Q ss_pred eecccCCCC
Q 003769 361 HPFTIPVGS 369 (796)
Q Consensus 361 q~V~vp~~~ 369 (796)
..|.+|.|+
T Consensus 347 ~~I~~~~Pd 355 (438)
T PTZ00361 347 RKIEFPNPD 355 (438)
T ss_pred EEEEeCCCC
Confidence 346666654
No 40
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.5e-10 Score=136.67 Aligned_cols=153 Identities=14% Similarity=0.190 Sum_probs=115.8
Q ss_pred ChHHHHHHHHHHhh----------ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHH
Q 003769 192 DSDDVMSVLNALIN----------KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEV 261 (796)
Q Consensus 192 r~~ei~~vi~~L~r----------~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~ 261 (796)
-.+||+.++..|-. -++.++|+||||||||-+|+++|.. .|+.|++++.+.|+.++.|--
T Consensus 319 AK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGE----------AgVPF~svSGSEFvE~~~g~~ 388 (774)
T KOG0731|consen 319 AKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGE----------AGVPFFSVSGSEFVEMFVGVG 388 (774)
T ss_pred HHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcc----------cCCceeeechHHHHHHhcccc
Confidence 35788888888742 5689999999999999999999974 257799999999999888888
Q ss_pred HHHHHHHHHHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC---CCCcEEEEEe
Q 003769 262 EQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG---ESERVWIMGI 338 (796)
Q Consensus 262 E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~---~~G~l~~IGa 338 (796)
..|+++|+...+. ..|+|+|||||+.+...|. |...+ ++ .-++... |..|+..|+ ..+.+.+|++
T Consensus 389 asrvr~lf~~ar~--~aP~iifideida~~~~r~---G~~~~---~~---~~e~e~t-lnQll~emDgf~~~~~vi~~a~ 456 (774)
T KOG0731|consen 389 ASRVRDLFPLARK--NAPSIIFIDEIDAVGRKRG---GKGTG---GG---QDEREQT-LNQLLVEMDGFETSKGVIVLAA 456 (774)
T ss_pred hHHHHHHHHHhhc--cCCeEEEeccccccccccc---ccccC---CC---ChHHHHH-HHHHHHHhcCCcCCCcEEEEec
Confidence 9999999999998 6899999999999988763 11110 01 2244444 677876654 3566999999
Q ss_pred cChHHHHHhhhcCccccc--cccceecccCCCCccc
Q 003769 339 ASFQTYTRCKAGHPSLEN--MWKLHPFTIPVGSLSL 372 (796)
Q Consensus 339 tT~~ey~k~~~~dpaLer--rf~lq~V~vp~~~l~~ 372 (796)
|+.. =..||||-| ||+- .|.|+.|.+..
T Consensus 457 tnr~-----d~ld~allrpGRfdr-~i~i~~p~~~~ 486 (774)
T KOG0731|consen 457 TNRP-----DILDPALLRPGRFDR-QIQIDLPDVKG 486 (774)
T ss_pred cCCc-----cccCHHhcCCCcccc-ceeccCCchhh
Confidence 9853 257899987 7763 45565555443
No 41
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.6e-10 Score=132.95 Aligned_cols=120 Identities=18% Similarity=0.216 Sum_probs=97.5
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
.+.+++|+||||||||.+|.++|... +.+|+++....|.++|.|..|+.+++||..+++ .+|||||+|
T Consensus 700 ~~~giLLyGppGcGKT~la~a~a~~~----------~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~--a~PCiLFFD 767 (952)
T KOG0735|consen 700 LRTGILLYGPPGCGKTLLASAIASNS----------NLRFISVKGPELLSKYIGASEQNVRDLFERAQS--AKPCILFFD 767 (952)
T ss_pred cccceEEECCCCCcHHHHHHHHHhhC----------CeeEEEecCHHHHHHHhcccHHHHHHHHHHhhc--cCCeEEEec
Confidence 56799999999999999999999753 689999999999999999999999999999998 489999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC-CCC--cEEEEEecChHHHHHhhhcCccccc
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG-ESE--RVWIMGIASFQTYTRCKAGHPSLEN 356 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~-~~G--~l~~IGatT~~ey~k~~~~dpaLer 356 (796)
|++.+++.|+. ++.| ..|..+- .|+++|+ ..| .+.++|||+.-. -.||||-|
T Consensus 768 EfdSiAPkRGh---DsTG--------VTDRVVN---QlLTelDG~Egl~GV~i~aaTsRpd-----liDpALLR 822 (952)
T KOG0735|consen 768 EFDSIAPKRGH---DSTG--------VTDRVVN---QLLTELDGAEGLDGVYILAATSRPD-----LIDPALLR 822 (952)
T ss_pred cccccCcccCC---CCCC--------chHHHHH---HHHHhhccccccceEEEEEecCCcc-----ccCHhhcC
Confidence 99999998731 2333 5666544 4665553 222 388999998654 37999988
No 42
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.07 E-value=8e-10 Score=123.41 Aligned_cols=136 Identities=13% Similarity=0.166 Sum_probs=94.3
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEcc
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLGD 286 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfIDE 286 (796)
+++++|+||||||||++|++++.++ +..++.+..+.+...|.|+.+..++.+++.++. ..++||||||
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l----------~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~--~~p~il~iDE 223 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRVVGSELVRKYIGEGARLVREIFELAKE--KAPSIIFIDE 223 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhC----------CCCEEecchHHHHHHhhhHHHHHHHHHHHHHHh--cCCcEEEhhh
Confidence 5679999999999999999999875 245777777777778999999999999998876 5689999999
Q ss_pred hhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC---CCCcEEEEEecChHHHHHhhhcCccccc--cccce
Q 003769 287 LKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG---ESERVWIMGIASFQTYTRCKAGHPSLEN--MWKLH 361 (796)
Q Consensus 287 lh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~---~~G~l~~IGatT~~ey~k~~~~dpaLer--rf~lq 361 (796)
++.+...+.. ...+ + ..+ .+..+..++..++ ..+.+.+|++|+..+ ..||+|-| ||+.
T Consensus 224 iD~l~~~~~~---~~~~----~---~~~-~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~-----~ld~al~r~grfd~- 286 (364)
T TIGR01242 224 IDAIAAKRTD---SGTS----G---DRE-VQRTLMQLLAELDGFDPRGNVKVIAATNRPD-----ILDPALLRPGRFDR- 286 (364)
T ss_pred hhhhcccccc---CCCC----c---cHH-HHHHHHHHHHHhhCCCCCCCEEEEEecCChh-----hCChhhcCcccCce-
Confidence 9999876421 1110 0 001 1111334443332 356799999998653 46888877 5542
Q ss_pred ecccCCCCcc
Q 003769 362 PFTIPVGSLS 371 (796)
Q Consensus 362 ~V~vp~~~l~ 371 (796)
.|.+|.|+..
T Consensus 287 ~i~v~~P~~~ 296 (364)
T TIGR01242 287 IIEVPLPDFE 296 (364)
T ss_pred EEEeCCcCHH
Confidence 3555655543
No 43
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.04 E-value=8.6e-10 Score=114.12 Aligned_cols=82 Identities=15% Similarity=0.223 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHHhh--c-----cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHH
Q 003769 192 DSDDVMSVLNALIN--K-----KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQK 264 (796)
Q Consensus 192 r~~ei~~vi~~L~r--~-----k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~r 264 (796)
..+++..-+.++.+ + -.+++|+||||+|||++++.+|+.. +..|..++...+.. .++
T Consensus 28 GQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~----------~~~~~~~sg~~i~k--~~d---- 91 (233)
T PF05496_consen 28 GQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL----------GVNFKITSGPAIEK--AGD---- 91 (233)
T ss_dssp S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC----------T--EEEEECCC--S--CHH----
T ss_pred CcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc----------CCCeEeccchhhhh--HHH----
Confidence 56777766666644 2 2478999999999999999999975 46677776543321 222
Q ss_pred HHHHHHHHHhccCCCEEEEEcchhhhhhh
Q 003769 265 LVELSCHVKSYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 265 l~~l~~~v~~~~~~~~ILfIDElh~l~~~ 293 (796)
+..++ ... ..+.||||||||.+...
T Consensus 92 l~~il---~~l-~~~~ILFIDEIHRlnk~ 116 (233)
T PF05496_consen 92 LAAIL---TNL-KEGDILFIDEIHRLNKA 116 (233)
T ss_dssp HHHHH---HT---TT-EEEECTCCC--HH
T ss_pred HHHHH---Hhc-CCCcEEEEechhhccHH
Confidence 23333 332 45689999999999876
No 44
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.01 E-value=6.2e-10 Score=139.90 Aligned_cols=125 Identities=10% Similarity=0.092 Sum_probs=88.4
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccc----------------------------
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQS---------------------------- 257 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~---------------------------- 257 (796)
-+++++|+||||||||.+|++||... ++.|++++++.++.++
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es----------~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~ 1698 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS----------YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLD 1698 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc----------CCceEEEEHHHHhhcccccccccccccccccccccccccccccc
Confidence 67899999999999999999999853 4668888888877533
Q ss_pred ---------------hHHHHHHHHHHHHHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHH
Q 003769 258 ---------------KGEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKR 322 (796)
Q Consensus 258 ---------------rge~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~ 322 (796)
.++-..|++.+++.+++ ..||||||||||.|.... .. ... |..
T Consensus 1699 ~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk--~SPCIIFIDEIDaL~~~d-------s~----------~lt---L~q 1756 (2281)
T CHL00206 1699 TELLTMMNALTMDMMPKIDRFYITLQFELAKA--MSPCIIWIPNIHDLNVNE-------SN----------YLS---LGL 1756 (2281)
T ss_pred hhhhhhcchhhhhhhhhhhHHHHHHHHHHHHH--CCCeEEEEEchhhcCCCc-------cc----------eeh---HHH
Confidence 11122358999999998 689999999999997541 10 010 223
Q ss_pred HhhhcC------CCCcEEEEEecChHHHHHhhhcCccccc--cccceecccCCC
Q 003769 323 LVFEIG------ESERVWIMGIASFQTYTRCKAGHPSLEN--MWKLHPFTIPVG 368 (796)
Q Consensus 323 L~~~~~------~~G~l~~IGatT~~ey~k~~~~dpaLer--rf~lq~V~vp~~ 368 (796)
|+..|+ ....+.|||||+.. -..||||-| ||+ ..|.|+.|
T Consensus 1757 LLneLDg~~~~~s~~~VIVIAATNRP-----D~LDPALLRPGRFD-R~I~Ir~P 1804 (2281)
T CHL00206 1757 LVNSLSRDCERCSTRNILVIASTHIP-----QKVDPALIAPNKLN-TCIKIRRL 1804 (2281)
T ss_pred HHHHhccccccCCCCCEEEEEeCCCc-----ccCCHhHcCCCCCC-eEEEeCCC
Confidence 333332 13459999999853 268999998 997 45555443
No 45
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.01 E-value=1.8e-09 Score=128.87 Aligned_cols=135 Identities=10% Similarity=0.185 Sum_probs=97.5
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEcc
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLGD 286 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfIDE 286 (796)
+++++|+||||+|||++++.++.+. +..|+.++.+.+..++.|..+.+++++++.++. ..|+||||||
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~----------~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~--~~P~IifIDE 252 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEA----------KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKK--AAPCIIFIDE 252 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEehHHhHHhhhcccHHHHHHHHHHHHh--cCCcEEEehh
Confidence 6789999999999999999999865 467899998888888899999999999999886 5789999999
Q ss_pred hhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC---CCCcEEEEEecChHHHHHhhhcCccccc--cccce
Q 003769 287 LKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG---ESERVWIMGIASFQTYTRCKAGHPSLEN--MWKLH 361 (796)
Q Consensus 287 lh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~---~~G~l~~IGatT~~ey~k~~~~dpaLer--rf~lq 361 (796)
++.+...+.. | ..| . ....-.. |..|+..|+ .+..+.+||||+..+ ..||||-| ||+ .
T Consensus 253 iD~l~~~r~~--~-~~g-----~--~~~~~~~-ln~lL~~mdg~~~~~~vivIaaTN~p~-----~lD~Al~RpgRfd-r 315 (644)
T PRK10733 253 IDAVGRQRGA--G-LGG-----G--HDEREQT-LNQMLVEMDGFEGNEGIIVIAATNRPD-----VLDPALLRPGRFD-R 315 (644)
T ss_pred HhhhhhccCC--C-CCC-----C--chHHHHH-HHHHHHhhhcccCCCCeeEEEecCChh-----hcCHHHhCCcccc-e
Confidence 9999876531 1 111 0 1111111 445554443 244589999998653 46899987 775 3
Q ss_pred ecccCCCCc
Q 003769 362 PFTIPVGSL 370 (796)
Q Consensus 362 ~V~vp~~~l 370 (796)
.|.+|-|+.
T Consensus 316 ~i~v~~Pd~ 324 (644)
T PRK10733 316 QVVVGLPDV 324 (644)
T ss_pred EEEcCCCCH
Confidence 445554443
No 46
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=8.5e-10 Score=128.13 Aligned_cols=151 Identities=13% Similarity=0.189 Sum_probs=110.3
Q ss_pred ChHHHHHHHHHHhh----------ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHH
Q 003769 192 DSDDVMSVLNALIN----------KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEV 261 (796)
Q Consensus 192 r~~ei~~vi~~L~r----------~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~ 261 (796)
-.+|+..+++-|-. -++.++|+||||||||.+++++|... ++.|++++.++|+.+|-|-=
T Consensus 158 akeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA----------~VPFf~iSGS~FVemfVGvG 227 (596)
T COG0465 158 AKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------GVPFFSISGSDFVEMFVGVG 227 (596)
T ss_pred HHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc----------CCCceeccchhhhhhhcCCC
Confidence 34566666666652 46799999999999999999998642 46799999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC---CCCcEEEEEe
Q 003769 262 EQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG---ESERVWIMGI 338 (796)
Q Consensus 262 E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~---~~G~l~~IGa 338 (796)
..|+++++...++ ..|||+|||||+.+...| |.+.|.| .+--+. . |-.|+..|+ .+..+.+|+|
T Consensus 228 AsRVRdLF~qAkk--~aP~IIFIDEiDAvGr~R----g~g~Ggg----nderEQ--T-LNQlLvEmDGF~~~~gviviaa 294 (596)
T COG0465 228 ASRVRDLFEQAKK--NAPCIIFIDEIDAVGRQR----GAGLGGG----NDEREQ--T-LNQLLVEMDGFGGNEGVIVIAA 294 (596)
T ss_pred cHHHHHHHHHhhc--cCCCeEEEehhhhccccc----CCCCCCC----chHHHH--H-HHHHHhhhccCCCCCceEEEec
Confidence 9999999999998 578999999999998776 3222211 111111 1 557776665 2335999999
Q ss_pred cChHHHHHhhhcCccccc--cccceecccCCCCcc
Q 003769 339 ASFQTYTRCKAGHPSLEN--MWKLHPFTIPVGSLS 371 (796)
Q Consensus 339 tT~~ey~k~~~~dpaLer--rf~lq~V~vp~~~l~ 371 (796)
|+..+- .||||-| ||+ ..|.|+-|.+.
T Consensus 295 TNRpdV-----lD~ALlRpgRFD-RqI~V~~PDi~ 323 (596)
T COG0465 295 TNRPDV-----LDPALLRPGRFD-RQILVELPDIK 323 (596)
T ss_pred CCCccc-----chHhhcCCCCcc-eeeecCCcchh
Confidence 997543 6899987 775 44555544433
No 47
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=8.5e-10 Score=114.19 Aligned_cols=141 Identities=12% Similarity=0.181 Sum_probs=105.4
Q ss_pred CCCCCChHHHHHHHHH------Hhh-----ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc
Q 003769 187 KSLGRDSDDVMSVLNA------LIN-----KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN 255 (796)
Q Consensus 187 g~ldpr~~ei~~vi~~------L~r-----~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a 255 (796)
|-+|--..||+..++. |.+ -++.++|+||||||||.+|+++|..- ...|+.+..+.|+.
T Consensus 158 ggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t----------~a~firvvgsefvq 227 (408)
T KOG0727|consen 158 GGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT----------TAAFIRVVGSEFVQ 227 (408)
T ss_pred ccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc----------chheeeeccHHHHH
Confidence 3445467788877664 333 67899999999999999999999753 35688888899999
Q ss_pred cchHHHHHHHHHHHHHHHhccCCCEEEEEcchhhhhhhhcc-cCCCCccccCCCcchhHHHHHHHHHHHhhhcC---CCC
Q 003769 256 QSKGEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWAN-YYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG---ESE 331 (796)
Q Consensus 256 ~~rge~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~-~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~---~~G 331 (796)
+|.||--.-+++++..+++ +.|.|+||||++.++-.|-. ..|+ .. -+... |-.|+.+|+ ..-
T Consensus 228 kylgegprmvrdvfrlake--napsiifideidaiatkrfdaqtga-dr--------evqri---l~ellnqmdgfdq~~ 293 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKE--NAPSIIFIDEIDAIATKRFDAQTGA-DR--------EVQRI---LIELLNQMDGFDQTT 293 (408)
T ss_pred HHhccCcHHHHHHHHHHhc--cCCcEEEeehhhhHhhhhccccccc-cH--------HHHHH---HHHHHHhccCcCccc
Confidence 9999999999999999998 68999999999999977622 1121 11 22333 335555553 466
Q ss_pred cEEEEEecChHHHHHhhhcCccccc
Q 003769 332 RVWIMGIASFQTYTRCKAGHPSLEN 356 (796)
Q Consensus 332 ~l~~IGatT~~ey~k~~~~dpaLer 356 (796)
.+.+|-||+.+. ..||||-|
T Consensus 294 nvkvimatnrad-----tldpallr 313 (408)
T KOG0727|consen 294 NVKVIMATNRAD-----TLDPALLR 313 (408)
T ss_pred ceEEEEecCccc-----ccCHhhcC
Confidence 799999998642 46888876
No 48
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.4e-09 Score=118.34 Aligned_cols=137 Identities=12% Similarity=0.141 Sum_probs=101.6
Q ss_pred HhhccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEE
Q 003769 203 LINKKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVL 282 (796)
Q Consensus 203 L~r~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~IL 282 (796)
|.+..++++|.||||+|||.+++++|.+- +..|+.++++.+..++.||-+.-++.+|-...+. .|+|+
T Consensus 123 Ll~p~kGiLL~GPpG~GKTmlAKA~Akea----------ga~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl--~P~iI 190 (386)
T KOG0737|consen 123 LLRPPKGILLYGPPGTGKTMLAKAIAKEA----------GANFINVSVSNLTSKWFGEAQKLVKAVFSLASKL--QPSII 190 (386)
T ss_pred cccCCccceecCCCCchHHHHHHHHHHHc----------CCCcceeeccccchhhHHHHHHHHHHHHhhhhhc--Cccee
Confidence 33467899999999999999999999873 6789999999999999999999999999998874 79999
Q ss_pred EEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCC--CCcEEEEEecChHHHHHhhhcCccccccccc
Q 003769 283 YLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGE--SERVWIMGIASFQTYTRCKAGHPSLENMWKL 360 (796)
Q Consensus 283 fIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~--~G~l~~IGatT~~ey~k~~~~dpaLerrf~l 360 (796)
||||+..+.+.|+ .++ .+++.-++.|+..+=.+... +-++-++|||+. =+..|.|.-||+.
T Consensus 191 FIDEvds~L~~R~----s~d-------HEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNR-----P~DlDeAiiRR~p- 253 (386)
T KOG0737|consen 191 FIDEVDSFLGQRR----STD-------HEATAMMKNEFMALWDGLSSKDSERVLVLGATNR-----PFDLDEAIIRRLP- 253 (386)
T ss_pred ehhhHHHHHhhcc----cch-------HHHHHHHHHHHHHHhccccCCCCceEEEEeCCCC-----CccHHHHHHHhCc-
Confidence 9999999999872 122 12444434434333333322 335999999984 2466777777763
Q ss_pred eecccCCC
Q 003769 361 HPFTIPVG 368 (796)
Q Consensus 361 q~V~vp~~ 368 (796)
+.+.|+-|
T Consensus 254 ~rf~V~lP 261 (386)
T KOG0737|consen 254 RRFHVGLP 261 (386)
T ss_pred ceeeeCCC
Confidence 44445433
No 49
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.97 E-value=3.2e-09 Score=128.86 Aligned_cols=152 Identities=14% Similarity=0.203 Sum_probs=109.6
Q ss_pred HHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHh-hcc-CCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecC
Q 003769 566 ENLKVLSDALERKAVVPWQKEIMPEIARTILEC-RSK-KEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSS 643 (796)
Q Consensus 566 e~L~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~-rs~-~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dm 643 (796)
..|..-...|.+. .+|++++-..|..-+... +.. .+.-.++|.||+| +|||.+|+.+|+.+ +. +|+++++
T Consensus 311 ~~~~~~~~~l~~~--~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG--~GKTtl~~~ia~~l-~~---~~~~i~~ 382 (784)
T PRK10787 311 KDLRQAQEILDTD--HYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPG--VGKTSLGQSIAKAT-GR---KYVRMAL 382 (784)
T ss_pred ccHHHHHHHhhhh--ccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCC--CCHHHHHHHHHHHh-CC---CEEEEEc
Confidence 3677788899999 999999999998766522 222 2233589999999 99999999999987 43 4899988
Q ss_pred CCCccccccccccCCC-CCCCCCCchhhHHHHHHhC--CCEEEEEcccccCCCChHHH----HHHHHHHHHcc---eEec
Q 003769 644 SQSRQDDCRTKKRSRD-VELGCCSYIERLGLALNEN--PHRVFFMEDLDDHKVDSCYC----QKGLKQAIENG---CIAL 713 (796)
Q Consensus 644 s~~~~~~~~~~k~~~~-~~~~~~~~~~~L~eavr~~--P~~Vvl~deieka~~~~~~v----~~~l~q~~d~G---~l~d 713 (796)
+... +... ..+. ..|.|. ..|.+..++++- ...|||||||||+ ++ +. ++.|++++|.+ .++|
T Consensus 383 ~~~~-d~~~---i~g~~~~~~g~-~~G~~~~~l~~~~~~~~villDEidk~--~~-~~~g~~~~aLlevld~~~~~~~~d 454 (784)
T PRK10787 383 GGVR-DEAE---IRGHRRTYIGS-MPGKLIQKMAKVGVKNPLFLLDEIDKM--SS-DMRGDPASALLEVLDPEQNVAFSD 454 (784)
T ss_pred CCCC-CHHH---hccchhccCCC-CCcHHHHHHHhcCCCCCEEEEEChhhc--cc-ccCCCHHHHHHHHhccccEEEEec
Confidence 7542 2111 1111 123333 234555555541 2349999999999 77 65 59999999986 7888
Q ss_pred CCC-ceecCCcEEEEeeCCCC
Q 003769 714 ADG-EIVPLKDSIIIFSCDSL 733 (796)
Q Consensus 714 ~~G-~~v~~~n~IiilTsn~~ 733 (796)
... -.+|+++.+||+|+|++
T Consensus 455 ~~~~~~~dls~v~~i~TaN~~ 475 (784)
T PRK10787 455 HYLEVDYDLSDVMFVATSNSM 475 (784)
T ss_pred ccccccccCCceEEEEcCCCC
Confidence 664 46899999999999976
No 50
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=2e-08 Score=117.21 Aligned_cols=149 Identities=15% Similarity=0.174 Sum_probs=101.9
Q ss_pred ChHHHHHHHHHHhh---------ccC-ceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHH
Q 003769 192 DSDDVMSVLNALIN---------KKR-NTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEV 261 (796)
Q Consensus 192 r~~ei~~vi~~L~r---------~k~-n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~ 261 (796)
++.-+..+.++|.- +.+ .++|.|+||+|||++|+.+|.++ |.+++.+|..+|++...+-.
T Consensus 406 ~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l----------g~h~~evdc~el~~~s~~~~ 475 (953)
T KOG0736|consen 406 LEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL----------GLHLLEVDCYELVAESASHT 475 (953)
T ss_pred chHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHh----------CCceEeccHHHHhhcccchh
Confidence 77777778888752 122 34578999999999999999986 68999999999999889999
Q ss_pred HHHHHHHHHHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhh-hcC--CCCcEEEEEe
Q 003769 262 EQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVF-EIG--ESERVWIMGI 338 (796)
Q Consensus 262 E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~-~~~--~~G~l~~IGa 338 (796)
|.++...+..++.+ .++|||+-.++-+... .+| | .....+-. +.-++. ... ..+.+.+||+
T Consensus 476 etkl~~~f~~a~~~--~pavifl~~~dvl~id-------~dg----g--ed~rl~~~-i~~~ls~e~~~~~~~~~ivv~t 539 (953)
T KOG0736|consen 476 ETKLQAIFSRARRC--SPAVLFLRNLDVLGID-------QDG----G--EDARLLKV-IRHLLSNEDFKFSCPPVIVVAT 539 (953)
T ss_pred HHHHHHHHHHHhhc--CceEEEEeccceeeec-------CCC----c--hhHHHHHH-HHHHHhcccccCCCCceEEEEe
Confidence 99999999999974 7899999999887643 222 0 01111111 112332 111 2577999999
Q ss_pred cChHHHHHhhhcCccccccccceecccCCCCccc
Q 003769 339 ASFQTYTRCKAGHPSLENMWKLHPFTIPVGSLSL 372 (796)
Q Consensus 339 tT~~ey~k~~~~dpaLerrf~lq~V~vp~~~l~~ 372 (796)
|+..+ .=|+--+.--++.+.+|.++-..
T Consensus 540 ~~s~~------~lp~~i~~~f~~ei~~~~lse~q 567 (953)
T KOG0736|consen 540 TSSIE------DLPADIQSLFLHEIEVPALSEEQ 567 (953)
T ss_pred ccccc------cCCHHHHHhhhhhccCCCCCHHH
Confidence 87643 33333332225677777655433
No 51
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.4e-09 Score=121.73 Aligned_cols=133 Identities=14% Similarity=0.151 Sum_probs=100.7
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
-.+.++|+||||+|||++++++|... +..|+.+..++|.++|.||-|.-++.|+..++. ..+.|+|||
T Consensus 185 p~rglLLfGPpgtGKtmL~~aiAsE~----------~atff~iSassLtsK~~Ge~eK~vralf~vAr~--~qPsvifid 252 (428)
T KOG0740|consen 185 PVRGLLLFGPPGTGKTMLAKAIATES----------GATFFNISASSLTSKYVGESEKLVRALFKVARS--LQPSVIFID 252 (428)
T ss_pred ccchhheecCCCCchHHHHHHHHhhh----------cceEeeccHHHhhhhccChHHHHHHHHHHHHHh--cCCeEEEec
Confidence 55688999999999999999999863 578999999999999999999999999999987 689999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC----CCCcEEEEEecChHHHHHhhhcCccccccccce
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG----ESERVWIMGIASFQTYTRCKAGHPSLENMWKLH 361 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~----~~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq 361 (796)
|++.++..|. .+..- ....+- ...|++..+ ...++.+||||+. ..+.|-|+-|||.-
T Consensus 253 Eidslls~Rs---~~e~e--------~srr~k--tefLiq~~~~~s~~~drvlvigaTN~-----P~e~Dea~~Rrf~k- 313 (428)
T KOG0740|consen 253 EIDSLLSKRS---DNEHE--------SSRRLK--TEFLLQFDGKNSAPDDRVLVIGATNR-----PWELDEAARRRFVK- 313 (428)
T ss_pred hhHHHHhhcC---Ccccc--------cchhhh--hHHHhhhccccCCCCCeEEEEecCCC-----chHHHHHHHHHhhc-
Confidence 9999999873 22111 222222 224554433 2568999999984 35778888888742
Q ss_pred ecccCCCC
Q 003769 362 PFTIPVGS 369 (796)
Q Consensus 362 ~V~vp~~~ 369 (796)
.+.||-|.
T Consensus 314 r~yiplPd 321 (428)
T KOG0740|consen 314 RLYIPLPD 321 (428)
T ss_pred eeeecCCC
Confidence 33355443
No 52
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.91 E-value=1.9e-09 Score=116.60 Aligned_cols=112 Identities=13% Similarity=0.128 Sum_probs=73.6
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc-cchHHHHHHHHHHHHHHHhccCCCEEEEE
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN-QSKGEVEQKLVELSCHVKSYMGRGIVLYL 284 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a-~~rge~E~rl~~l~~~v~~~~~~~~ILfI 284 (796)
+-+++||+||||||||++++.|+.--... .++|++++...-.- -.|+-||+--++. .-. ++..||||
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~-------SyrfvelSAt~a~t~dvR~ife~aq~~~----~l~-krkTilFi 228 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKH-------SYRFVELSATNAKTNDVRDIFEQAQNEK----SLT-KRKTILFI 228 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCC-------ceEEEEEeccccchHHHHHHHHHHHHHH----hhh-cceeEEEe
Confidence 67899999999999999999998643221 36788887532211 2333333321111 111 56799999
Q ss_pred cchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccccc
Q 003769 285 GDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLENMW 358 (796)
Q Consensus 285 DElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLerrf 358 (796)
||||.+.... + |. +.+.+ +.|.|.+|||||.+.-. ..+.||-.|-
T Consensus 229 DEiHRFNksQ--------Q----------D~----fLP~V----E~G~I~lIGATTENPSF---qln~aLlSRC 273 (554)
T KOG2028|consen 229 DEIHRFNKSQ--------Q----------DT----FLPHV----ENGDITLIGATTENPSF---QLNAALLSRC 273 (554)
T ss_pred HHhhhhhhhh--------h----------hc----cccee----ccCceEEEecccCCCcc---chhHHHHhcc
Confidence 9999997751 1 21 33444 59999999999987654 4566776653
No 53
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=4.2e-09 Score=109.83 Aligned_cols=126 Identities=10% Similarity=0.115 Sum_probs=94.6
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
-++.++|+||||+|||-.++++|.|- +.-|+.+=.+.|+.+|.||-..-+++|++-++. .+-||+|+|
T Consensus 210 ppkgvllygppgtgktl~aravanrt----------dacfirvigselvqkyvgegarmvrelf~mart--kkaciiffd 277 (435)
T KOG0729|consen 210 PPKGVLLYGPPGTGKTLCARAVANRT----------DACFIRVIGSELVQKYVGEGARMVRELFEMART--KKACIIFFD 277 (435)
T ss_pred CCCceEEeCCCCCchhHHHHHHhccc----------CceEEeehhHHHHHHHhhhhHHHHHHHHHHhcc--cceEEEEee
Confidence 57899999999999999999999874 467887777888889999999999999999986 677999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccc
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLEN 356 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLer 356 (796)
|++.+-++|-.- |. +| .. -+...-.||-.-+.+.+.||.|.++-||+... ..||||-|
T Consensus 278 eidaiggarfdd-g~-gg-----dn-evqrtmleli~qldgfdprgnikvlmatnrpd-----tldpallr 335 (435)
T KOG0729|consen 278 EIDAIGGARFDD-GA-GG-----DN-EVQRTMLELINQLDGFDPRGNIKVLMATNRPD-----TLDPALLR 335 (435)
T ss_pred ccccccCccccC-CC-CC-----cH-HHHHHHHHHHHhccCCCCCCCeEEEeecCCCC-----CcCHhhcC
Confidence 999998886210 11 11 11 23343344443344455699999999987421 35777765
No 54
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.9e-09 Score=113.59 Aligned_cols=126 Identities=9% Similarity=0.079 Sum_probs=93.5
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
-++.++|+|+||+|||-+++++|+.- ...|+.+-.+.|+.+|.|+--.-+++||+-+.. ..|.|+|||
T Consensus 218 pPKGVIlyG~PGTGKTLLAKAVANqT----------SATFlRvvGseLiQkylGdGpklvRqlF~vA~e--~apSIvFiD 285 (440)
T KOG0726|consen 218 PPKGVILYGEPGTGKTLLAKAVANQT----------SATFLRVVGSELIQKYLGDGPKLVRELFRVAEE--HAPSIVFID 285 (440)
T ss_pred CCCeeEEeCCCCCchhHHHHHHhccc----------chhhhhhhhHHHHHHHhccchHHHHHHHHHHHh--cCCceEEee
Confidence 67899999999999999999999753 356666666778889999999999999999988 578999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccc
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLEN 356 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLer 356 (796)
||+.+-..|-+. +++|. --+...-.||.--+.+.+.||++.+|-||+. .-..||||-|
T Consensus 286 EIdAiGtKRyds--~Sgge------rEiQrtmLELLNQldGFdsrgDvKvimATnr-----ie~LDPaLiR 343 (440)
T KOG0726|consen 286 EIDAIGTKRYDS--NSGGE------REIQRTMLELLNQLDGFDSRGDVKVIMATNR-----IETLDPALIR 343 (440)
T ss_pred hhhhhccccccC--CCccH------HHHHHHHHHHHHhccCccccCCeEEEEeccc-----ccccCHhhcC
Confidence 999987766221 11110 0233333333323344447999999999984 3358999987
No 55
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.85 E-value=3.6e-09 Score=101.45 Aligned_cols=113 Identities=19% Similarity=0.297 Sum_probs=77.3
Q ss_pred EEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCC-CCC-Cch-hhHHHHHHhCCCEEE
Q 003769 607 LLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVEL-GCC-SYI-ERLGLALNENPHRVF 683 (796)
Q Consensus 607 ~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~-~~~-~~~-~~L~eavr~~P~~Vv 683 (796)
+|+.||+| +|||++|++||+.+ + ..++.+.++.....+. +.+.... .+. .+. +.|+.+++ .-.|+
T Consensus 2 vlL~G~~G--~GKt~l~~~la~~~-~---~~~~~i~~~~~~~~~d----l~g~~~~~~~~~~~~~~~l~~a~~--~~~il 69 (139)
T PF07728_consen 2 VLLVGPPG--TGKTTLARELAALL-G---RPVIRINCSSDTTEED----LIGSYDPSNGQFEFKDGPLVRAMR--KGGIL 69 (139)
T ss_dssp EEEEESSS--SSHHHHHHHHHHHH-T---CEEEEEE-TTTSTHHH----HHCEEET-TTTTCEEE-CCCTTHH--EEEEE
T ss_pred EEEECCCC--CCHHHHHHHHHHHh-h---cceEEEEecccccccc----ceeeeeeccccccccccccccccc--ceeEE
Confidence 68999999 99999999999999 4 5588899986532222 1121100 111 222 46666666 55789
Q ss_pred EEcccccCCCChHHHHHHHHHHHHcceEecCC-CceecCCc-------EEEEeeCCCCC
Q 003769 684 FMEDLDDHKVDSCYCQKGLKQAIENGCIALAD-GEIVPLKD-------SIIIFSCDSLD 734 (796)
Q Consensus 684 l~deieka~~~~~~v~~~l~q~~d~G~l~d~~-G~~v~~~n-------~IiilTsn~~~ 734 (796)
+||||++| ++ .++..|+++++++++.-.. ++.+...+ ..||+|+|..+
T Consensus 70 ~lDEin~a--~~-~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~ 125 (139)
T PF07728_consen 70 VLDEINRA--PP-EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD 125 (139)
T ss_dssp EESSCGG----H-HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST
T ss_pred EECCcccC--CH-HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC
Confidence 99999999 99 9999999999999998443 34555543 89999999543
No 56
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.85 E-value=1.5e-08 Score=107.88 Aligned_cols=142 Identities=18% Similarity=0.203 Sum_probs=105.7
Q ss_pred HHHHHHHHhhcCCCCCCcchHHHHHHHHHHHhhc---cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCC-CceEEec
Q 003769 567 NLKVLSDALERKAVVPWQKEIMPEIARTILECRS---KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHS-NNFTNLS 642 (796)
Q Consensus 567 ~L~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~rs---~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~-~~~i~~d 642 (796)
++..|+..|+.. ++||--|..-|..+|+--.. .+..-.+=|.|++| +||..+|+-||+.+|-+-. .++|+.
T Consensus 72 ~~~~Le~dL~~~--lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tG--TGKN~Va~iiA~n~~~~Gl~S~~V~~- 146 (344)
T KOG2170|consen 72 DLDGLEKDLARA--LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTG--TGKNYVAEIIAENLYRGGLRSPFVHH- 146 (344)
T ss_pred cchHHHHHHHHH--hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCC--CchhHHHHHHHHHHHhccccchhHHH-
Confidence 477899999999 99999999999999987766 33346778999999 9999999999999995430 112111
Q ss_pred CCCCccccccccccCCCCCCCCC----Cchh----hHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecC
Q 003769 643 SSQSRQDDCRTKKRSRDVELGCC----SYIE----RLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALA 714 (796)
Q Consensus 643 ms~~~~~~~~~~k~~~~~~~~~~----~~~~----~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~ 714 (796)
| +.+ -.|.-. .|-+ ++.+-++.-+.++++|||+||. || .+++.|.--+|.--
T Consensus 147 ---f----vat------~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm--p~-gLld~lkpfLdyyp---- 206 (344)
T KOG2170|consen 147 ---F----VAT------LHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL--PP-GLLDVLKPFLDYYP---- 206 (344)
T ss_pred ---h----hhh------ccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc--CH-hHHHHHhhhhcccc----
Confidence 1 000 011112 2333 5555666789999999999999 99 88888888887632
Q ss_pred CCceecCCcEEEEeeCCCC
Q 003769 715 DGEIVPLKDSIIIFSCDSL 733 (796)
Q Consensus 715 ~G~~v~~~n~IiilTsn~~ 733 (796)
.+..|||++||+|+=||..
T Consensus 207 ~v~gv~frkaIFIfLSN~g 225 (344)
T KOG2170|consen 207 QVSGVDFRKAIFIFLSNAG 225 (344)
T ss_pred ccccccccceEEEEEcCCc
Confidence 3334999999999999964
No 57
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.84 E-value=2.5e-08 Score=103.42 Aligned_cols=123 Identities=21% Similarity=0.297 Sum_probs=77.1
Q ss_pred CCCcchHHHHHHHHHHHhhc-cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCC
Q 003769 581 VPWQKEIMPEIARTILECRS-KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs-~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~ 659 (796)
++||++++....-.+..++. +.+...+||.||+| +|||.||.-+|..+ |.+ |..+....-
T Consensus 26 fiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG--~GKTTLA~IIA~e~-~~~---~~~~sg~~i------------- 86 (233)
T PF05496_consen 26 FIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPG--LGKTTLARIIANEL-GVN---FKITSGPAI------------- 86 (233)
T ss_dssp S-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTT--SSHHHHHHHHHHHC-T-----EEEEECCC--------------
T ss_pred ccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCc--cchhHHHHHHHhcc-CCC---eEeccchhh-------------
Confidence 79999999987766666665 56788999999999 99999999999998 443 543322100
Q ss_pred CCCCCCCchhhHHHHHHh-CCCEEEEEcccccCCCChHHHHHHHHHHHHcceEec--CCC---ceec--CCcEEEE-eeC
Q 003769 660 VELGCCSYIERLGLALNE-NPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIAL--ADG---EIVP--LKDSIII-FSC 730 (796)
Q Consensus 660 ~~~~~~~~~~~L~eavr~-~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d--~~G---~~v~--~~n~Iii-lTs 730 (796)
... +.|...+.. ++..|+|+|||..- .+ .+++.|+.+||+|+++- +.| |.+. +..--+| -|+
T Consensus 87 ---~k~---~dl~~il~~l~~~~ILFIDEIHRl--nk-~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATT 157 (233)
T PF05496_consen 87 ---EKA---GDLAAILTNLKEGDILFIDEIHRL--NK-AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATT 157 (233)
T ss_dssp ----SC---HHHHHHHHT--TT-EEEECTCCC----H-HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEES
T ss_pred ---hhH---HHHHHHHHhcCCCcEEEEechhhc--cH-HHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeec
Confidence 001 223333333 57789999999999 99 99999999999999852 333 4444 4443444 455
Q ss_pred C
Q 003769 731 D 731 (796)
Q Consensus 731 n 731 (796)
.
T Consensus 158 r 158 (233)
T PF05496_consen 158 R 158 (233)
T ss_dssp S
T ss_pred c
Confidence 4
No 58
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.5e-08 Score=104.98 Aligned_cols=145 Identities=10% Similarity=0.132 Sum_probs=105.5
Q ss_pred HHHHHhh-ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccC
Q 003769 199 VLNALIN-KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMG 277 (796)
Q Consensus 199 vi~~L~r-~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~ 277 (796)
+.+.|.- .++.++|.||||+|||-+++++|..- .+.|+.++.+.|+.+|.||-..-+++||--++. .
T Consensus 172 LF~aLGIaQPKGvlLygppgtGktLlaraVahht----------~c~firvsgselvqk~igegsrmvrelfvmare--h 239 (404)
T KOG0728|consen 172 LFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTFIRVSGSELVQKYIGEGSRMVRELFVMARE--H 239 (404)
T ss_pred HHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc----------ceEEEEechHHHHHHHhhhhHHHHHHHHHHHHh--c
Confidence 3455666 89999999999999999999999753 578999999999999999999999999999988 6
Q ss_pred CCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccc-
Q 003769 278 RGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLEN- 356 (796)
Q Consensus 278 ~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLer- 356 (796)
.|.|+|.|||+.+-..|... +++| . +-+...-.||.--+.+..+...+.+|-||+.= =-.||||-|
T Consensus 240 apsiifmdeidsigs~r~e~--~~gg-----d-sevqrtmlellnqldgfeatknikvimatnri-----dild~allrp 306 (404)
T KOG0728|consen 240 APSIIFMDEIDSIGSSRVES--GSGG-----D-SEVQRTMLELLNQLDGFEATKNIKVIMATNRI-----DILDPALLRP 306 (404)
T ss_pred CCceEeeecccccccccccC--CCCc-----c-HHHHHHHHHHHHhccccccccceEEEEecccc-----ccccHhhcCC
Confidence 79999999999998876431 1111 1 13334333333223333346779999999842 246899876
Q ss_pred -cccceecccCCCC
Q 003769 357 -MWKLHPFTIPVGS 369 (796)
Q Consensus 357 -rf~lq~V~vp~~~ 369 (796)
|.+ ..+..|.|+
T Consensus 307 grid-rkiefp~p~ 319 (404)
T KOG0728|consen 307 GRID-RKIEFPPPN 319 (404)
T ss_pred Cccc-ccccCCCCC
Confidence 222 244556554
No 59
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.79 E-value=2.1e-08 Score=110.55 Aligned_cols=140 Identities=17% Similarity=0.241 Sum_probs=101.7
Q ss_pred HHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCC
Q 003769 566 ENLKVLSDALERKAVVPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQ 645 (796)
Q Consensus 566 e~L~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~ 645 (796)
..+..+...+.+. ++|+++++..+-.+++ ..+-+||.||+| +|||.+|+.+|+.+. -+|+++.+..
T Consensus 13 ~~~~~~~~~~~~~--~~g~~~~~~~~l~a~~------~~~~vll~G~PG--~gKT~la~~lA~~l~----~~~~~i~~t~ 78 (329)
T COG0714 13 EILGKIRSELEKV--VVGDEEVIELALLALL------AGGHVLLEGPPG--VGKTLLARALARALG----LPFVRIQCTP 78 (329)
T ss_pred hHHHHHHhhcCCe--eeccHHHHHHHHHHHH------cCCCEEEECCCC--ccHHHHHHHHHHHhC----CCeEEEecCC
Confidence 3566678888888 9999998888877777 445789999999 999999999999995 3489999875
Q ss_pred CccccccccccCCCCCCCC----C---Cch-hhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCc
Q 003769 646 SRQDDCRTKKRSRDVELGC----C---SYI-ERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGE 717 (796)
Q Consensus 646 ~~~~~~~~~k~~~~~~~~~----~---~~~-~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~ 717 (796)
+..... ..|...|.- . -+. +-|+.+++ .|+|+|||.+| +| .+++.|+++|++++++. .|.
T Consensus 79 ~l~p~d----~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~DEInra--~p-~~q~aLl~~l~e~~vtv-~~~ 146 (329)
T COG0714 79 DLLPSD----LLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLLDEINRA--PP-EVQNALLEALEERQVTV-PGL 146 (329)
T ss_pred CCCHHH----hcCchhHhhhhccCCeEEEecCCcccccc----eEEEEeccccC--CH-HHHHHHHHHHhCcEEEE-CCc
Confidence 422111 111111110 0 011 34566666 89999999999 99 99999999999999996 334
Q ss_pred e-ecCCcEEEE-eeCC
Q 003769 718 I-VPLKDSIII-FSCD 731 (796)
Q Consensus 718 ~-v~~~n~Iii-lTsn 731 (796)
. +.+..-.+| .|+|
T Consensus 147 ~~~~~~~~f~viaT~N 162 (329)
T COG0714 147 TTIRLPPPFIVIATQN 162 (329)
T ss_pred CCcCCCCCCEEEEccC
Confidence 4 677665555 4667
No 60
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=6.7e-09 Score=125.81 Aligned_cols=127 Identities=17% Similarity=0.181 Sum_probs=99.8
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
.++.+++.||||+|||.++++||.....| .+..-|+.-+..+..+++.||.|+.++-++++++. ..+.|+|+|
T Consensus 298 pPrgvL~~GppGTGkTl~araLa~~~s~~-----~~kisffmrkgaD~lskwvgEaERqlrllFeeA~k--~qPSIIffd 370 (1080)
T KOG0732|consen 298 PPRGVLFHGPPGTGKTLMARALAAACSRG-----NRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQK--TQPSIIFFD 370 (1080)
T ss_pred CCcceeecCCCCCchhHHHHhhhhhhccc-----ccccchhhhcCchhhccccCcHHHHHHHHHHHHhc--cCceEEecc
Confidence 46789999999999999999999877665 34455666666777789999999999999999998 589999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHH-HHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccc
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEE-YVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLEN 356 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d-~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLer 356 (796)
||+=|++.|+.. .++ +- -.+.-|-+|+.+++.||.+.+||||+...| .||||-|
T Consensus 371 eIdGlapvrSsk---qEq---------ih~SIvSTLLaLmdGldsRgqVvvigATnRpda-----~dpaLRR 425 (1080)
T KOG0732|consen 371 EIDGLAPVRSSK---QEQ---------IHASIVSTLLALMDGLDSRGQVVVIGATNRPDA-----IDPALRR 425 (1080)
T ss_pred ccccccccccch---HHH---------hhhhHHHHHHHhccCCCCCCceEEEcccCCccc-----cchhhcC
Confidence 999998886421 122 11 122335577788878999999999998766 4788865
No 61
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=2.7e-08 Score=116.62 Aligned_cols=133 Identities=14% Similarity=0.177 Sum_probs=85.6
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCC---CceEEecCCCC------ccccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHS---NNFTNLSSSQS------RQDDC 651 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~---~~~i~~dms~~------~~~~~ 651 (796)
|+||+.++..+.+++...| ..--+||.||.| +|||.+|+.||+.+++... ..+..--+... ..+.|
T Consensus 18 VIGQe~vv~~L~~al~~gR---LpHA~LFtGP~G--vGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~h 92 (700)
T PRK12323 18 LVGQEHVVRALTHALEQQR---LHHAYLFTGTRG--VGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRF 92 (700)
T ss_pred HcCcHHHHHHHHHHHHhCC---CceEEEEECCCC--CCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCC
Confidence 8999999998888886443 334578999999 9999999999999987420 11100000000 00111
Q ss_pred cccccCCCCCCCCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEE
Q 003769 652 RTKKRSRDVELGCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIII 727 (796)
Q Consensus 652 ~~~k~~~~~~~~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~Iii 727 (796)
.-.-.+......|-+.+..|.+.+...| |+|++|||+|.. +. ..+|.||..||+ .-++++||
T Consensus 93 pDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~L--s~-~AaNALLKTLEE-----------PP~~v~FI 158 (700)
T PRK12323 93 VDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML--TN-HAFNAMLKTLEE-----------PPEHVKFI 158 (700)
T ss_pred CcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhc--CH-HHHHHHHHhhcc-----------CCCCceEE
Confidence 0000000000011122335666666555 799999999999 99 999999999987 34788999
Q ss_pred eeCCC
Q 003769 728 FSCDS 732 (796)
Q Consensus 728 lTsn~ 732 (796)
|+||.
T Consensus 159 LaTte 163 (700)
T PRK12323 159 LATTD 163 (700)
T ss_pred EEeCC
Confidence 98874
No 62
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.78 E-value=3.6e-08 Score=112.52 Aligned_cols=147 Identities=15% Similarity=0.145 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCC
Q 003769 565 DENLKVLSDALERKAVVPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSS 644 (796)
Q Consensus 565 ~e~L~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms 644 (796)
.+++..|.+.|++. |+||+++|..+..+++ ..+.+||.||+| +|||.+|++||..+-. . ..|..+...
T Consensus 8 ~~~i~~l~~~l~~~--i~gre~vI~lll~aal------ag~hVLL~GpPG--TGKT~LAraLa~~~~~-~-~~F~~~~~~ 75 (498)
T PRK13531 8 AERISRLSSALEKG--LYERSHAIRLCLLAAL------SGESVFLLGPPG--IAKSLIARRLKFAFQN-A-RAFEYLMTR 75 (498)
T ss_pred HHHHHHHHHHHhhh--ccCcHHHHHHHHHHHc------cCCCEEEECCCC--hhHHHHHHHHHHHhcc-c-Ccceeeeee
Confidence 46888999999999 9999999999988887 567899999999 9999999999998632 2 223322221
Q ss_pred CCccccccccccCCCCCCCCCCchhhHHHHHHhCC---CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecC
Q 003769 645 QSRQDDCRTKKRSRDVELGCCSYIERLGLALNENP---HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPL 721 (796)
Q Consensus 645 ~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P---~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~ 721 (796)
+++. ..+.|...+....--+++. ..+..| ..|+|+|||.++ .| .+++.|+++|+++.++. .|++..+
T Consensus 76 -fttp----~DLfG~l~i~~~~~~g~f~-r~~~G~L~~A~lLfLDEI~ra--sp-~~QsaLLeam~Er~~t~-g~~~~~l 145 (498)
T PRK13531 76 -FSTP----EEVFGPLSIQALKDEGRYQ-RLTSGYLPEAEIVFLDEIWKA--GP-AILNTLLTAINERRFRN-GAHEEKI 145 (498)
T ss_pred -ecCc----HHhcCcHHHhhhhhcCchh-hhcCCccccccEEeecccccC--CH-HHHHHHHHHHHhCeEec-CCeEEeC
Confidence 1000 0111100000000001111 122222 239999999999 99 99999999999999996 6788888
Q ss_pred CcEEEEeeCCCC
Q 003769 722 KDSIIIFSCDSL 733 (796)
Q Consensus 722 ~n~IiilTsn~~ 733 (796)
.-=+||++||..
T Consensus 146 p~rfiv~ATN~L 157 (498)
T PRK13531 146 PMRLLVTASNEL 157 (498)
T ss_pred CCcEEEEECCCC
Confidence 888899988854
No 63
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.78 E-value=4.3e-08 Score=111.43 Aligned_cols=121 Identities=14% Similarity=0.165 Sum_probs=80.7
Q ss_pred HHHHHhh-ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhcc-
Q 003769 199 VLNALIN-KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYM- 276 (796)
Q Consensus 199 vi~~L~r-~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~- 276 (796)
+...+.. ...+++|+||||||||++++.++... +..++.++.... ... .++++++.+....
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~----------~~~~~~l~a~~~---~~~----~ir~ii~~~~~~~~ 89 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT----------DAPFEALSAVTS---GVK----DLREVIEEARQRRS 89 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecccc---cHH----HHHHHHHHHHHhhh
Confidence 3344445 66789999999999999999999864 346777764321 112 2344444443210
Q ss_pred -CCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCcccc
Q 003769 277 -GRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLE 355 (796)
Q Consensus 277 -~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLe 355 (796)
+++.||||||+|.+... ..++ |.+.+ ++|.+.+||+||.+.+. ..+|+|-
T Consensus 90 ~g~~~vL~IDEi~~l~~~------------------~q~~----LL~~l----e~~~iilI~att~n~~~---~l~~aL~ 140 (413)
T PRK13342 90 AGRRTILFIDEIHRFNKA------------------QQDA----LLPHV----EDGTITLIGATTENPSF---EVNPALL 140 (413)
T ss_pred cCCceEEEEechhhhCHH------------------HHHH----HHHHh----hcCcEEEEEeCCCChhh---hccHHHh
Confidence 46789999999988654 1122 44444 37899999999987664 4679999
Q ss_pred ccccceecccCC
Q 003769 356 NMWKLHPFTIPV 367 (796)
Q Consensus 356 rrf~lq~V~vp~ 367 (796)
+|+. .+.++.
T Consensus 141 SR~~--~~~~~~ 150 (413)
T PRK13342 141 SRAQ--VFELKP 150 (413)
T ss_pred ccce--eeEeCC
Confidence 9974 444443
No 64
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.78 E-value=5.3e-08 Score=104.11 Aligned_cols=130 Identities=14% Similarity=0.193 Sum_probs=85.9
Q ss_pred chHHHHHHHHHHHhhc-cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCC-CCC
Q 003769 585 KEIMPEIARTILECRS-KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD-VEL 662 (796)
Q Consensus 585 ~~av~~ia~~i~~~rs-~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~-~~~ 662 (796)
...+..+-+.++++-. ++ -+|+.||+| +|||.+|++||+.+ |.. ++++++++.. ... .+.|. .++
T Consensus 4 t~~~~~l~~~~l~~l~~g~---~vLL~G~~G--tGKT~lA~~la~~l-g~~---~~~i~~~~~~-~~~---dllg~~~~~ 70 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKSGY---PVHLRGPAG--TGKTTLAMHVARKR-DRP---VMLINGDAEL-TTS---DLVGSYAGY 70 (262)
T ss_pred CHHHHHHHHHHHHHHhcCC---eEEEEcCCC--CCHHHHHHHHHHHh-CCC---EEEEeCCccC-CHH---HHhhhhccc
Confidence 3455555555554433 33 467899999 99999999999955 644 9999887531 111 11110 000
Q ss_pred -------------------CCCCch-hhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCC----ce
Q 003769 663 -------------------GCCSYI-ERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADG----EI 718 (796)
Q Consensus 663 -------------------~~~~~~-~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G----~~ 718 (796)
.+..+. +.|+.|.++ + .+++||||+++ ++ ++++.|++++++|.++-..+ +.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~-g-~~lllDEi~r~--~~-~~q~~Ll~~Le~~~~~i~~~~~~~~~ 145 (262)
T TIGR02640 71 TRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAVRE-G-FTLVYDEFTRS--KP-ETNNVLLSVFEEGVLELPGKRGTSRY 145 (262)
T ss_pred chhhHHHHHHHHhhhhhcccceeecCchHHHHHHc-C-CEEEEcchhhC--CH-HHHHHHHHHhcCCeEEccCCCCCCce
Confidence 000111 467777764 3 49999999999 99 99999999999999886443 23
Q ss_pred ec-CCcEEEEeeCCC
Q 003769 719 VP-LKDSIIIFSCDS 732 (796)
Q Consensus 719 v~-~~n~IiilTsn~ 732 (796)
+. -.+..||+|+|.
T Consensus 146 i~~~~~frvIaTsN~ 160 (262)
T TIGR02640 146 VDVHPEFRVIFTSNP 160 (262)
T ss_pred EecCCCCEEEEeeCC
Confidence 31 135569999994
No 65
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.78 E-value=4e-08 Score=116.51 Aligned_cols=131 Identities=11% Similarity=0.133 Sum_probs=83.3
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCC------CCcccccccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSS------QSRQDDCRTK 654 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms------~~~~~~~~~~ 654 (796)
|+||+.++..+.+.|.. ++..-.+||.||.| +|||.+|+.||+.++... . .....+. ....+.|.-.
T Consensus 18 VIGQe~Vv~~L~~aL~~---gRL~HAyLFtGPpG--vGKTTlAriLAKaLnCe~-~-~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 18 LVGQEHVVRALTHALDG---GRLHHAYLFTGTRG--VGKTTLSRIFAKALNCET-G-VTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred HcCcHHHHHHHHHHHhc---CCCCeEEEEECCCC--CCHHHHHHHHHHHhcCcc-C-CCCCCCcccHHHHHHhcCCCceE
Confidence 79999999988877653 33444678999999 999999999999998642 1 1000000 0000011000
Q ss_pred ccCCCCCCCCCCchhhHHHHHHhC----CCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeC
Q 003769 655 KRSRDVELGCCSYIERLGLALNEN----PHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSC 730 (796)
Q Consensus 655 k~~~~~~~~~~~~~~~L~eavr~~----P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTs 730 (796)
-.+......|-+.+..|.+.+... .|.|++|||+|.. +. ..+|.|+..||+ .-.+++|||+|
T Consensus 91 iEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L--T~-~A~NALLKtLEE-----------PP~~v~FILaT 156 (830)
T PRK07003 91 VEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHML--TN-HAFNAMLKTLEE-----------PPPHVKFILAT 156 (830)
T ss_pred EEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhC--CH-HHHHHHHHHHHh-----------cCCCeEEEEEE
Confidence 000000001111223444554443 5789999999999 99 999999999987 34689999998
Q ss_pred CC
Q 003769 731 DS 732 (796)
Q Consensus 731 n~ 732 (796)
|.
T Consensus 157 td 158 (830)
T PRK07003 157 TD 158 (830)
T ss_pred CC
Confidence 74
No 66
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2.6e-08 Score=106.32 Aligned_cols=123 Identities=10% Similarity=0.121 Sum_probs=92.2
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
-+..++|+||||+|||-+++++|..+ |+.|+.+..+.++.+|.||-..-+++.+..++. ..+||||+|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~m----------g~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~--~~pciifmd 232 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATM----------GVNFLKVVSSALVDKYIGESARLIRDMFRYARE--VIPCIIFMD 232 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhc----------CCceEEeeHhhhhhhhcccHHHHHHHHHHHHhh--hCceEEeeh
Confidence 35567789999999999999999876 678999999999999999999999999999998 578999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC---CCCcEEEEEecChHHHHHhhhcCccccc
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG---ESERVWIMGIASFQTYTRCKAGHPSLEN 356 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~---~~G~l~~IGatT~~ey~k~~~~dpaLer 356 (796)
||+.+.+.+- +++..+ +. -+.+..| .|+.+|+ .-|++.+|-||+.- =..||||-|
T Consensus 233 eiDAigGRr~-----se~Ts~--dr-eiqrTLM---eLlnqmdgfd~l~rVk~ImatNrp-----dtLdpaLlR 290 (388)
T KOG0651|consen 233 EIDAIGGRRF-----SEGTSS--DR-EIQRTLM---ELLNQMDGFDTLHRVKTIMATNRP-----DTLDPALLR 290 (388)
T ss_pred hhhhhccEEe-----ccccch--hH-HHHHHHH---HHHHhhccchhcccccEEEecCCc-----cccchhhcC
Confidence 9999987652 222100 00 1222223 4454443 47899999999732 145777765
No 67
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=7.2e-07 Score=103.66 Aligned_cols=127 Identities=17% Similarity=0.203 Sum_probs=87.1
Q ss_pred HHHHhh-ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCC
Q 003769 200 LNALIN-KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGR 278 (796)
Q Consensus 200 i~~L~r-~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~ 278 (796)
.+.+.. ...++++.|+||+|||.++++++.. +..+..++......++.|+.+.++..+++.++.. .
T Consensus 10 ~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~--~ 76 (494)
T COG0464 10 FKKLGIEPPKGVLLHGPPGTGKTLLARALANE-----------GAEFLSINGPEILSKYVGESELRLRELFEEAEKL--A 76 (494)
T ss_pred HHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-----------cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHh--C
Confidence 344555 7889999999999999999999986 1223556666667799999999999999999984 5
Q ss_pred CEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccc
Q 003769 279 GIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLEN 356 (796)
Q Consensus 279 ~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLer 356 (796)
+.|+|+||++.+.+.+.. ..+. ..+.....|-.++.++. +|.+.++|+|.. ....||++-+
T Consensus 77 ~~ii~~d~~~~~~~~~~~---~~~~--------~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~-----~~~~~~a~~~ 137 (494)
T COG0464 77 PSIIFIDEIDALAPKRSS---DQGE--------VERRVVAQLLALMDGLK-RGQVIVIGATNR-----PDGLDPAKRR 137 (494)
T ss_pred CCeEeechhhhcccCccc---cccc--------hhhHHHHHHHHhccccc-CCceEEEeecCC-----ccccChhHhC
Confidence 699999999999988631 0111 22333333445554443 566666664443 2345555543
No 68
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.72 E-value=5.1e-08 Score=109.48 Aligned_cols=71 Identities=20% Similarity=0.305 Sum_probs=59.1
Q ss_pred HHHHHHHhhcCCCCCCcchHHHHHHHHHHHh--hc-----c---CCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCc
Q 003769 568 LKVLSDALERKAVVPWQKEIMPEIARTILEC--RS-----K---KEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNN 637 (796)
Q Consensus 568 L~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~--rs-----~---~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~ 637 (796)
.+.+.+.|.+. |+||++|+..++.++... |. . .+...+||.||+| +|||++|++||+.+ + .+
T Consensus 6 p~~I~~~Ld~~--IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G--~GKT~LAr~LAk~l-~---~~ 77 (443)
T PRK05201 6 PREIVSELDKY--IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTG--VGKTEIARRLAKLA-N---AP 77 (443)
T ss_pred HHHHHHHhccc--cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCC--CCHHHHHHHHHHHh-C---Ch
Confidence 35678999999 999999999999999652 22 1 1137899999999 99999999999998 4 56
Q ss_pred eEEecCCCC
Q 003769 638 FTNLSSSQS 646 (796)
Q Consensus 638 ~i~~dms~~ 646 (796)
|+++||+++
T Consensus 78 fi~vD~t~f 86 (443)
T PRK05201 78 FIKVEATKF 86 (443)
T ss_pred heeecchhh
Confidence 999999865
No 69
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2.4e-08 Score=103.98 Aligned_cols=140 Identities=11% Similarity=0.141 Sum_probs=99.3
Q ss_pred ChHHHHHHHHHHh-------------h-ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccc
Q 003769 192 DSDDVMSVLNALI-------------N-KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQS 257 (796)
Q Consensus 192 r~~ei~~vi~~L~-------------r-~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~ 257 (796)
-|..|..+++.+. - .++.++++||||+|||.++++.|..- +..|+.|-...|+.+|
T Consensus 176 ldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT----------~aTFLKLAgPQLVQMf 245 (424)
T KOG0652|consen 176 LDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT----------NATFLKLAGPQLVQMF 245 (424)
T ss_pred HHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc----------cchHHHhcchHHHhhh
Confidence 4566666666542 1 46789999999999999999998753 4567777777888899
Q ss_pred hHHHHHHHHHHHHHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEE
Q 003769 258 KGEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMG 337 (796)
Q Consensus 258 rge~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IG 337 (796)
.|+-..-+++.|..++. ..|+|+|||||+.+--.|- +++..|++- +...-.||.--+.+.....++.+|+
T Consensus 246 IGdGAkLVRDAFaLAKE--kaP~IIFIDElDAIGtKRf----DSek~GDRE----VQRTMLELLNQLDGFss~~~vKviA 315 (424)
T KOG0652|consen 246 IGDGAKLVRDAFALAKE--KAPTIIFIDELDAIGTKRF----DSEKAGDRE----VQRTMLELLNQLDGFSSDDRVKVIA 315 (424)
T ss_pred hcchHHHHHHHHHHhhc--cCCeEEEEechhhhccccc----cccccccHH----HHHHHHHHHHhhcCCCCccceEEEe
Confidence 99999999999999998 6799999999999876652 233322211 2222222332222222467899999
Q ss_pred ecChHHHHHhhhcCccccc
Q 003769 338 IASFQTYTRCKAGHPSLEN 356 (796)
Q Consensus 338 atT~~ey~k~~~~dpaLer 356 (796)
||+.-. -.||||-|
T Consensus 316 ATNRvD-----iLDPALlR 329 (424)
T KOG0652|consen 316 ATNRVD-----ILDPALLR 329 (424)
T ss_pred eccccc-----ccCHHHhh
Confidence 998532 46888876
No 70
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.68 E-value=2.2e-07 Score=86.97 Aligned_cols=141 Identities=15% Similarity=0.153 Sum_probs=84.1
Q ss_pred ChHHHHHHHHHHhh-ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHH--HHH
Q 003769 192 DSDDVMSVLNALIN-KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKL--VEL 268 (796)
Q Consensus 192 r~~ei~~vi~~L~r-~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl--~~l 268 (796)
++..+..+...+.. ..++++++||||+|||++++.++..+.. .+..++.++................ ...
T Consensus 3 ~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (151)
T cd00009 3 QEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR-------PGAPFLYLNASDLLEGLVVAELFGHFLVRL 75 (151)
T ss_pred hHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc-------CCCCeEEEehhhhhhhhHHHHHhhhhhHhH
Confidence 56677777777776 6888999999999999999999998752 2467888887665542222211110 111
Q ss_pred HHHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhc-C---CCCcEEEEEecChHHH
Q 003769 269 SCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEI-G---ESERVWIMGIASFQTY 344 (796)
Q Consensus 269 ~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~-~---~~G~l~~IGatT~~ey 344 (796)
....... ..+.+|+|||++.+... .... +..++... . ..+.+.+|++++...-
T Consensus 76 ~~~~~~~-~~~~~lilDe~~~~~~~------------------~~~~----~~~~i~~~~~~~~~~~~~~ii~~~~~~~~ 132 (151)
T cd00009 76 LFELAEK-AKPGVLFIDEIDSLSRG------------------AQNA----LLRVLETLNDLRIDRENVRVIGATNRPLL 132 (151)
T ss_pred HHHhhcc-CCCeEEEEeChhhhhHH------------------HHHH----HHHHHHhcCceeccCCCeEEEEecCcccc
Confidence 1111111 45789999999987322 0111 22222111 0 1367899998886542
Q ss_pred HHhhhcCccccccccceecccC
Q 003769 345 TRCKAGHPSLENMWKLHPFTIP 366 (796)
Q Consensus 345 ~k~~~~dpaLerrf~lq~V~vp 366 (796)
...++.+..||. +.+.+|
T Consensus 133 ---~~~~~~~~~r~~-~~i~~~ 150 (151)
T cd00009 133 ---GDLDRALYDRLD-IRIVIP 150 (151)
T ss_pred ---CCcChhHHhhhc-cEeecC
Confidence 344556666764 444443
No 71
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=8.8e-08 Score=109.59 Aligned_cols=130 Identities=15% Similarity=0.142 Sum_probs=82.7
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCC-
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD- 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~- 659 (796)
|+||+.++..+..++.. ++....+||.||.| +|||.+|+.||+.++......... +....+ -..+..+...
T Consensus 20 vVGQe~iv~~L~~~i~~---~ri~ha~Lf~GP~G--tGKTTlAriLAk~Lnce~~~~~~p--Cg~C~s-C~~i~~g~~~d 91 (484)
T PRK14956 20 VIHQDLAIGALQNALKS---GKIGHAYIFFGPRG--VGKTTIARILAKRLNCENPIGNEP--CNECTS-CLEITKGISSD 91 (484)
T ss_pred HhChHHHHHHHHHHHHc---CCCCeEEEEECCCC--CCHHHHHHHHHHhcCcccccCccc--cCCCcH-HHHHHccCCcc
Confidence 79999999887777653 33334689999999 999999999999998643010000 000000 0000000000
Q ss_pred ------CCCCCCCchhhHHHHHHh----CCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEee
Q 003769 660 ------VELGCCSYIERLGLALNE----NPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFS 729 (796)
Q Consensus 660 ------~~~~~~~~~~~L~eavr~----~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilT 729 (796)
....|...+-.|.+.+.. ..|.|++|||++.. +. +.+|.|+..+|+- -.++||||+
T Consensus 92 viEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L--s~-~A~NALLKtLEEP-----------p~~viFILa 157 (484)
T PRK14956 92 VLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML--TD-QSFNALLKTLEEP-----------PAHIVFILA 157 (484)
T ss_pred ceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc--CH-HHHHHHHHHhhcC-----------CCceEEEee
Confidence 000111222345555553 45789999999999 99 9999999999752 268899998
Q ss_pred CCC
Q 003769 730 CDS 732 (796)
Q Consensus 730 sn~ 732 (796)
|+.
T Consensus 158 Tte 160 (484)
T PRK14956 158 TTE 160 (484)
T ss_pred cCC
Confidence 874
No 72
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=1.1e-07 Score=110.56 Aligned_cols=126 Identities=14% Similarity=0.157 Sum_probs=83.1
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCc----------eEEecCCCCcccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNN----------FTNLSSSQSRQDD 650 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~----------~i~~dms~~~~~~ 650 (796)
|+||+.++..+..++... +....+||.||.| +|||.+|+.||+.+++.. .. ...|+.+.+ .+-
T Consensus 18 ivGq~~v~~~L~~~~~~~---~l~ha~Lf~Gp~G--~GKTt~A~~lAk~l~c~~-~~~~~pCg~C~~C~~i~~g~~-~d~ 90 (509)
T PRK14958 18 VIGQAPVVRALSNALDQQ---YLHHAYLFTGTRG--VGKTTISRILAKCLNCEK-GVSANPCNDCENCREIDEGRF-PDL 90 (509)
T ss_pred hcCCHHHHHHHHHHHHhC---CCCeeEEEECCCC--CCHHHHHHHHHHHhcCCC-CCCcccCCCCHHHHHHhcCCC-ceE
Confidence 899999999888888643 3445788999999 999999999999998753 10 001111100 000
Q ss_pred ccccccCCCCCCCCCCchhhHHHHHHh----CCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEE
Q 003769 651 CRTKKRSRDVELGCCSYIERLGLALNE----NPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSII 726 (796)
Q Consensus 651 ~~~~k~~~~~~~~~~~~~~~L~eavr~----~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~Ii 726 (796)
+.+ ......|-+.+..+.+.+.. .+|.|++|||++.. ++ ..+|.|+..||+ .=.+++|
T Consensus 91 ~ei----daas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~l--s~-~a~naLLk~LEe-----------pp~~~~f 152 (509)
T PRK14958 91 FEV----DAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHML--SG-HSFNALLKTLEE-----------PPSHVKF 152 (509)
T ss_pred EEE----cccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhc--CH-HHHHHHHHHHhc-----------cCCCeEE
Confidence 000 00001111122344455443 45789999999999 99 999999999986 2367889
Q ss_pred EeeCC
Q 003769 727 IFSCD 731 (796)
Q Consensus 727 ilTsn 731 (796)
||+|+
T Consensus 153 Ilatt 157 (509)
T PRK14958 153 ILATT 157 (509)
T ss_pred EEEEC
Confidence 98775
No 73
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=1.3e-07 Score=106.74 Aligned_cols=133 Identities=15% Similarity=0.157 Sum_probs=88.0
Q ss_pred CCCcchHHHHHHHHHHHhhc------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCC------cc
Q 003769 581 VPWQKEIMPEIARTILECRS------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQS------RQ 648 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~------~~ 648 (796)
|+||+.++..+.++|..-|. .+....+||.||+| +|||.+|+++|+.++... ..- -.+.+. ..
T Consensus 7 IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G--~GKt~lA~~lA~~l~c~~-~~~--~~Cg~C~~C~~~~~ 81 (394)
T PRK07940 7 LVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPG--SGRSVAARAFAAALQCTD-PDE--PGCGECRACRTVLA 81 (394)
T ss_pred ccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCC--CcHHHHHHHHHHHhCCCC-CCC--CCCCCCHHHHHHhc
Confidence 89999999999999987663 23456788999999 999999999999998764 210 011100 01
Q ss_pred ccccccccCCCCC-CCCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCc
Q 003769 649 DDCRTKKRSRDVE-LGCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKD 723 (796)
Q Consensus 649 ~~~~~~k~~~~~~-~~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n 723 (796)
+.|.-.....+.+ ..+-+.+..+.+.+...| ++|++|||+|+. .+ ..+|.|+..+|+. =.+
T Consensus 82 ~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m--~~-~aanaLLk~LEep-----------~~~ 147 (394)
T PRK07940 82 GTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRL--TE-RAANALLKAVEEP-----------PPR 147 (394)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhc--CH-HHHHHHHHHhhcC-----------CCC
Confidence 1121111111110 001112235666666666 589999999999 99 9999999999873 245
Q ss_pred EEEEeeCCC
Q 003769 724 SIIIFSCDS 732 (796)
Q Consensus 724 ~IiilTsn~ 732 (796)
++|||+|+.
T Consensus 148 ~~fIL~a~~ 156 (394)
T PRK07940 148 TVWLLCAPS 156 (394)
T ss_pred CeEEEEECC
Confidence 777776654
No 74
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=1.2e-07 Score=110.73 Aligned_cols=126 Identities=13% Similarity=0.138 Sum_probs=82.6
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCc----------eEEecCCCCcccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNN----------FTNLSSSQSRQDD 650 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~----------~i~~dms~~~~~~ 650 (796)
|+||+.++..+..++.. .+....+||.||.| +|||.+|+.||+.+++.. .. ...+++..+ .+-
T Consensus 18 iiGq~~~v~~L~~~i~~---~rl~ha~Lf~Gp~G--vGKTTlAr~lAk~L~c~~-~~~~~pCg~C~sC~~i~~~~~-~dl 90 (546)
T PRK14957 18 VAGQQHALNSLVHALET---QKVHHAYLFTGTRG--VGKTTLGRLLAKCLNCKT-GVTAEPCNKCENCVAINNNSF-IDL 90 (546)
T ss_pred hcCcHHHHHHHHHHHHc---CCCCeEEEEECCCC--CCHHHHHHHHHHHhCCCC-CCCCCCCcccHHHHHHhcCCC-Cce
Confidence 79999999988877753 34445688999999 999999999999998632 10 000111100 000
Q ss_pred ccccccCCCCCCCCCCchhhHHHHHHhC----CCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEE
Q 003769 651 CRTKKRSRDVELGCCSYIERLGLALNEN----PHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSII 726 (796)
Q Consensus 651 ~~~~k~~~~~~~~~~~~~~~L~eavr~~----P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~Ii 726 (796)
... .+ ....|...+..+.+.+... .|.||+|||+++. .. ..+|.|+..||+. -.+++|
T Consensus 91 iei---da-as~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l--s~-~a~naLLK~LEep-----------p~~v~f 152 (546)
T PRK14957 91 IEI---DA-ASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHML--SK-QSFNALLKTLEEP-----------PEYVKF 152 (546)
T ss_pred EEe---ec-ccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhc--cH-HHHHHHHHHHhcC-----------CCCceE
Confidence 000 00 0011122233555555554 4789999999999 99 9999999999984 256778
Q ss_pred EeeCC
Q 003769 727 IFSCD 731 (796)
Q Consensus 727 ilTsn 731 (796)
||+|+
T Consensus 153 IL~Tt 157 (546)
T PRK14957 153 ILATT 157 (546)
T ss_pred EEEEC
Confidence 87664
No 75
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=1.3e-07 Score=111.23 Aligned_cols=116 Identities=14% Similarity=0.189 Sum_probs=81.5
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCC--------------------CceEE
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHS--------------------NNFTN 640 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~--------------------~~~i~ 640 (796)
|+||+.++..+.++|.. ++....+||.||.| +|||.+|+.||+.+.+... -+++.
T Consensus 17 VIGQe~vv~~L~~aI~~---grl~HAyLF~GPpG--vGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviE 91 (702)
T PRK14960 17 LVGQNHVSRALSSALER---GRLHHAYLFTGTRG--VGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIE 91 (702)
T ss_pred hcCcHHHHHHHHHHHHc---CCCCeEEEEECCCC--CCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEE
Confidence 89999999998888763 34446789999999 9999999999999976420 01111
Q ss_pred ecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhC----CCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCC
Q 003769 641 LSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNEN----PHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADG 716 (796)
Q Consensus 641 ~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~----P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G 716 (796)
+|.+. ..+-..+..+.+.++.. .|.|++|||++.. +. ..+|.|+..+++-
T Consensus 92 IDAAs----------------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~L--S~-~A~NALLKtLEEP------- 145 (702)
T PRK14960 92 IDAAS----------------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHML--ST-HSFNALLKTLEEP------- 145 (702)
T ss_pred ecccc----------------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhc--CH-HHHHHHHHHHhcC-------
Confidence 11110 01111122344444433 5789999999999 99 9999999999862
Q ss_pred ceecCCcEEEEeeCC
Q 003769 717 EIVPLKDSIIIFSCD 731 (796)
Q Consensus 717 ~~v~~~n~IiilTsn 731 (796)
-.+++|||+|+
T Consensus 146 ----P~~v~FILaTt 156 (702)
T PRK14960 146 ----PEHVKFLFATT 156 (702)
T ss_pred ----CCCcEEEEEEC
Confidence 25678888776
No 76
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.65 E-value=1.2e-07 Score=94.99 Aligned_cols=139 Identities=17% Similarity=0.180 Sum_probs=93.7
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCC-
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD- 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~- 659 (796)
++|++.++..+.+.+.+.-. ...-+|+.|++| +||+.+|+++-+.-.-.. ..||.+|++.+. ++..-..+-|.
T Consensus 1 liG~s~~m~~~~~~~~~~a~--~~~pVlI~GE~G--tGK~~lA~~IH~~s~r~~-~pfi~vnc~~~~-~~~~e~~LFG~~ 74 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS--SDLPVLITGETG--TGKELLARAIHNNSPRKN-GPFISVNCAALP-EELLESELFGHE 74 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT--STS-EEEECSTT--SSHHHHHHHHHHCSTTTT-S-EEEEETTTS--HHHHHHHHHEBC
T ss_pred CEeCCHHHHHHHHHHHHHhC--CCCCEEEEcCCC--CcHHHHHHHHHHhhhccc-CCeEEEehhhhh-cchhhhhhhccc
Confidence 57888888888777765433 236788999999 999999999999776566 789999999773 23211222222
Q ss_pred C-CCCCCCchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCC-ceecCCcEEEEeeCC
Q 003769 660 V-ELGCCSYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADG-EIVPLKDSIIIFSCD 731 (796)
Q Consensus 660 ~-~~~~~~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G-~~v~~~n~IiilTsn 731 (796)
. .|.|... .-...+..--.-.++|||||.. .+ .+|.-|+++|++|.++--.+ +.+. -|+-||.||+
T Consensus 75 ~~~~~~~~~--~~~G~l~~A~~GtL~Ld~I~~L--~~-~~Q~~Ll~~l~~~~~~~~g~~~~~~-~~~RiI~st~ 142 (168)
T PF00158_consen 75 KGAFTGARS--DKKGLLEQANGGTLFLDEIEDL--PP-ELQAKLLRVLEEGKFTRLGSDKPVP-VDVRIIASTS 142 (168)
T ss_dssp SSSSTTTSS--EBEHHHHHTTTSEEEEETGGGS---H-HHHHHHHHHHHHSEEECCTSSSEEE---EEEEEEES
T ss_pred ccccccccc--ccCCceeeccceEEeecchhhh--HH-HHHHHHHHHHhhchhcccccccccc-ccceEEeecC
Confidence 1 1222211 1124556667789999999999 99 99999999999999986444 3444 3778999876
No 77
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=1.9e-07 Score=104.48 Aligned_cols=131 Identities=15% Similarity=0.168 Sum_probs=82.2
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceE--E---ecCCCCccccccccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFT--N---LSSSQSRQDDCRTKK 655 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i--~---~dms~~~~~~~~~~k 655 (796)
|+||+.++..+.+++... +..-.+||.||.| +|||.+|+++|+.+++.. ..-. + ..+.+...+.|.-.-
T Consensus 18 iiGq~~~~~~l~~~~~~~---~~~h~~L~~Gp~G--~GKTtla~~la~~l~c~~-~~~~~pc~~c~~c~~~~~~~~~d~~ 91 (363)
T PRK14961 18 IIGQKHIVTAISNGLSLG---RIHHAWLLSGTRG--VGKTTIARLLAKSLNCQN-GITSNPCRKCIICKEIEKGLCLDLI 91 (363)
T ss_pred ccChHHHHHHHHHHHHcC---CCCeEEEEecCCC--CCHHHHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHhcCCCCceE
Confidence 899999999888777643 3334678999999 999999999999998642 1000 0 000000000010000
Q ss_pred cCCCCC-CCCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeC
Q 003769 656 RSRDVE-LGCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSC 730 (796)
Q Consensus 656 ~~~~~~-~~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTs 730 (796)
.. .+. ..+...+..+.+.+...| +.||+|||+++. .. ..++.|+..+++- -.+++|||+|
T Consensus 92 ~~-~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l--~~-~a~naLLk~lEe~-----------~~~~~fIl~t 156 (363)
T PRK14961 92 EI-DAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHML--SR-HSFNALLKTLEEP-----------PQHIKFILAT 156 (363)
T ss_pred Ee-cccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhc--CH-HHHHHHHHHHhcC-----------CCCeEEEEEc
Confidence 00 000 011122345666666555 679999999999 88 8999999999872 2367788877
Q ss_pred CC
Q 003769 731 DS 732 (796)
Q Consensus 731 n~ 732 (796)
+.
T Consensus 157 ~~ 158 (363)
T PRK14961 157 TD 158 (363)
T ss_pred CC
Confidence 53
No 78
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.65 E-value=2e-07 Score=111.13 Aligned_cols=152 Identities=9% Similarity=0.033 Sum_probs=95.5
Q ss_pred ChHHHHHHHHHHhh-----ccCceE-EEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeeccccccc---c-----
Q 003769 192 DSDDVMSVLNALIN-----KKRNTV-IVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQ---S----- 257 (796)
Q Consensus 192 r~~ei~~vi~~L~r-----~k~n~v-LvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~---~----- 257 (796)
||+|++++...|.. ..++++ |.|+||||||++|+.+++++...---..+....++.++...+... |
T Consensus 760 REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~q 839 (1164)
T PTZ00112 760 REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYK 839 (1164)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHH
Confidence 99999999999875 334554 899999999999999998875321011233467888886433221 1
Q ss_pred --------hH-HHHHHHHHHHHHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC
Q 003769 258 --------KG-EVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG 328 (796)
Q Consensus 258 --------rg-e~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~ 328 (796)
+| ...+.+..++..+........||+|||||.|.... + +. |-.|..+..
T Consensus 840 qL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~-------Q-----------DV----LYnLFR~~~ 897 (1164)
T PTZ00112 840 QLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT-------Q-----------KV----LFTLFDWPT 897 (1164)
T ss_pred HHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH-------H-----------HH----HHHHHHHhh
Confidence 11 12345566666653320334699999999998641 1 11 223332221
Q ss_pred -CCCcEEEEEecChHHHHHhhhcCccccccccceecccCC
Q 003769 329 -ESERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTIPV 367 (796)
Q Consensus 329 -~~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp~ 367 (796)
..+.|.+||+++.-.+.. ..+|.+..||....+..|+
T Consensus 898 ~s~SKLiLIGISNdlDLpe--rLdPRLRSRLg~eeIvF~P 935 (1164)
T PTZ00112 898 KINSKLVLIAISNTMDLPE--RLIPRCRSRLAFGRLVFSP 935 (1164)
T ss_pred ccCCeEEEEEecCchhcch--hhhhhhhhccccccccCCC
Confidence 367899999998655544 3468888887655455554
No 79
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=2e-07 Score=109.75 Aligned_cols=133 Identities=15% Similarity=0.125 Sum_probs=83.5
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCce-EEecCC---CCcc--cccccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNF-TNLSSS---QSRQ--DDCRTK 654 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~-i~~dms---~~~~--~~~~~~ 654 (796)
|+||+.++..+.+.|.. .+..-.+||.||.| +|||.+|+.||+.+++...... -+-.+. .... +.+.-.
T Consensus 15 ivGq~~i~~~L~~~i~~---~r~~ha~Lf~Gp~G--~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dv 89 (584)
T PRK14952 15 VVGQEHVTEPLSSALDA---GRINHAYLFSGPRG--CGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDV 89 (584)
T ss_pred hcCcHHHHHHHHHHHHc---CCCCeEEEEECCCC--CCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceE
Confidence 79999999998888753 44445688999999 9999999999999996320000 000000 0000 000000
Q ss_pred ccCCCCCCCCCCchhhHHHHHHh----CCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeC
Q 003769 655 KRSRDVELGCCSYIERLGLALNE----NPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSC 730 (796)
Q Consensus 655 k~~~~~~~~~~~~~~~L~eavr~----~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTs 730 (796)
..+-.....|-+.+..|-+.+.. .+|.||+|||++.. +. ..+|.|+..||+ .=.+++|||++
T Consensus 90 ieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~L--t~-~A~NALLK~LEE-----------pp~~~~fIL~t 155 (584)
T PRK14952 90 VELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMV--TT-AGFNALLKIVEE-----------PPEHLIFIFAT 155 (584)
T ss_pred EEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcC--CH-HHHHHHHHHHhc-----------CCCCeEEEEEe
Confidence 00000000112223345455544 45889999999999 99 999999999987 33588899977
Q ss_pred CC
Q 003769 731 DS 732 (796)
Q Consensus 731 n~ 732 (796)
+-
T Consensus 156 te 157 (584)
T PRK14952 156 TE 157 (584)
T ss_pred CC
Confidence 53
No 80
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=1.7e-07 Score=110.89 Aligned_cols=132 Identities=12% Similarity=0.173 Sum_probs=84.5
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEec---CCC------Cccccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLS---SSQ------SRQDDC 651 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~d---ms~------~~~~~~ 651 (796)
|+||+.++..+.+.+...| -.-.+||.||.| +|||.+|+.||+.++....+..-.++ +.. ...+.|
T Consensus 18 viGQe~vv~~L~~~l~~~r---l~ha~Lf~Gp~G--vGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h 92 (618)
T PRK14951 18 MVGQEHVVQALTNALTQQR---LHHAYLFTGTRG--VGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRF 92 (618)
T ss_pred hcCcHHHHHHHHHHHHcCC---CCeEEEEECCCC--CCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCC
Confidence 7899999998888776443 345788999999 99999999999999853201000000 000 000111
Q ss_pred cccccCCCCCCCCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEE
Q 003769 652 RTKKRSRDVELGCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIII 727 (796)
Q Consensus 652 ~~~k~~~~~~~~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~Iii 727 (796)
.-..-+......|-+.+..+.+.+...| |.|++|||+|.. +. ..+|.|+..+|+ .-.+++||
T Consensus 93 ~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L--s~-~a~NaLLKtLEE-----------PP~~~~fI 158 (618)
T PRK14951 93 VDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHML--TN-TAFNAMLKTLEE-----------PPEYLKFV 158 (618)
T ss_pred CceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhC--CH-HHHHHHHHhccc-----------CCCCeEEE
Confidence 0000000000011123345667777666 799999999999 99 999999999986 23678888
Q ss_pred eeCC
Q 003769 728 FSCD 731 (796)
Q Consensus 728 lTsn 731 (796)
|+|+
T Consensus 159 L~Tt 162 (618)
T PRK14951 159 LATT 162 (618)
T ss_pred EEEC
Confidence 8775
No 81
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=1.8e-07 Score=113.00 Aligned_cols=132 Identities=13% Similarity=0.128 Sum_probs=83.8
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCC-c-eEEecCC---CCccccccccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSN-N-FTNLSSS---QSRQDDCRTKK 655 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~-~-~i~~dms---~~~~~~~~~~k 655 (796)
|+||+.++..+.++|... |-.-.+||.||.| +|||.+|+.||+.+++.. . . ..+-.+. +.....|....
T Consensus 18 IIGQe~Iv~~LknaI~~~---rl~HAyLFtGPpG--tGKTTLARiLAk~Lnce~-~~~~~pCg~C~sC~~i~~g~~~Dvi 91 (944)
T PRK14949 18 MVGQSHVLHALTNALTQQ---RLHHAYLFTGTRG--VGKTSLARLFAKGLNCEQ-GVTATPCGVCSSCVEIAQGRFVDLI 91 (944)
T ss_pred hcCcHHHHHHHHHHHHhC---CCCeEEEEECCCC--CCHHHHHHHHHHhccCcc-CCCCCCCCCchHHHHHhcCCCceEE
Confidence 899999999888777543 3344568999999 999999999999998753 1 0 0000000 00000010000
Q ss_pred cCCCCCCCCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCC
Q 003769 656 RSRDVELGCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 656 ~~~~~~~~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn 731 (796)
-.-.....+-..+..|.+.++..| |.||+|||+++. .. ..+|.|+..||+- =.+++|||+|+
T Consensus 92 EidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L--T~-eAqNALLKtLEEP-----------P~~vrFILaTT 157 (944)
T PRK14949 92 EVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML--SR-SSFNALLKTLEEP-----------PEHVKFLLATT 157 (944)
T ss_pred EeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc--CH-HHHHHHHHHHhcc-----------CCCeEEEEECC
Confidence 000000111222345666666555 789999999999 99 9999999999972 24677888775
Q ss_pred C
Q 003769 732 S 732 (796)
Q Consensus 732 ~ 732 (796)
-
T Consensus 158 e 158 (944)
T PRK14949 158 D 158 (944)
T ss_pred C
Confidence 3
No 82
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=98.61 E-value=5.8e-08 Score=77.91 Aligned_cols=53 Identities=30% Similarity=0.471 Sum_probs=47.9
Q ss_pred HHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHhhcCCCChhhHHHHHHHHHHHhc
Q 003769 23 AVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKALELCFNVALN 80 (796)
Q Consensus 23 A~~~Ar~~gh~~VtpeHLLlaLL~~~~g~l~~iL~~~~gi~~~~d~~aL~~~l~~~L~ 80 (796)
|+++|+++||.+|+|+|||++|+.+++|.+.++|++ +|+ ++ +.++..++..++
T Consensus 1 A~~~A~~~~~~~i~~eHlL~all~~~~~~~~~il~~-~~i-d~---~~l~~~i~~~lg 53 (53)
T PF02861_consen 1 AQELARERGHQYISPEHLLLALLEDPDSIAARILKK-LGI-DP---EQLKAAIEKALG 53 (53)
T ss_dssp HHHHHHHTTBSSE-HHHHHHHHHHHTTSHHHHHHHH-TTC-HH---HHHHHHHHHHHC
T ss_pred CHHHHHHcCCCcccHHHHHHHHHhhhhHHHHHHHHH-cCC-CH---HHHHHHHHHHhC
Confidence 789999999999999999999999999999999999 999 66 999998887753
No 83
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.61 E-value=3.1e-07 Score=103.21 Aligned_cols=149 Identities=16% Similarity=0.237 Sum_probs=94.1
Q ss_pred ChHHHHHHHHHHhh-----ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc----------c
Q 003769 192 DSDDVMSVLNALIN-----KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN----------Q 256 (796)
Q Consensus 192 r~~ei~~vi~~L~r-----~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a----------~ 256 (796)
|++|++.+...|.. ...|++|+|+||+|||++++.+++.+.+.. .+..++.++...... .
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-----~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-----VKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-----CCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 99999999999854 447899999999999999999999876432 246677777542211 0
Q ss_pred -------chH-HHHHHHHHHHHHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC
Q 003769 257 -------SKG-EVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG 328 (796)
Q Consensus 257 -------~rg-e~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~ 328 (796)
.+| .+++-+..+.+.++.. +.++||+|||++.+.... + . +.... |-.+....
T Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~viviDE~d~l~~~~----~--~-----------~~l~~-l~~~~~~~- 169 (394)
T PRK00411 110 LFGHPPPSSGLSFDELFDKIAEYLDER-DRVLIVALDDINYLFEKE----G--N-----------DVLYS-LLRAHEEY- 169 (394)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhc-CCEEEEEECCHhHhhccC----C--c-----------hHHHH-HHHhhhcc-
Confidence 011 2344445555555543 567999999999998320 1 1 11111 22222111
Q ss_pred CCCcEEEEEecChHHHHHhhhcCccccccccceecccCC
Q 003769 329 ESERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTIPV 367 (796)
Q Consensus 329 ~~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp~ 367 (796)
....+.+|++++....... .+|.+.++|..+.|..|.
T Consensus 170 ~~~~v~vI~i~~~~~~~~~--l~~~~~s~~~~~~i~f~p 206 (394)
T PRK00411 170 PGARIGVIGISSDLTFLYI--LDPRVKSVFRPEEIYFPP 206 (394)
T ss_pred CCCeEEEEEEECCcchhhh--cCHHHHhcCCcceeecCC
Confidence 1236889999887655543 467777776555566655
No 84
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.61 E-value=1.7e-07 Score=111.18 Aligned_cols=132 Identities=15% Similarity=0.123 Sum_probs=83.5
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCc--eEEecCC---CCccccccccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNN--FTNLSSS---QSRQDDCRTKK 655 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~--~i~~dms---~~~~~~~~~~k 655 (796)
|+||+.++..+..++...| -.-.+||.||.| +|||.+|+.+|+.+++.. .. .-+..+. +...+.|.-..
T Consensus 18 ivGQe~vv~~L~~~l~~~r---l~hAyLf~Gp~G--vGKTTlAr~lAk~L~c~~-~~~~~pCg~C~~C~~i~~g~~~D~i 91 (647)
T PRK07994 18 VVGQEHVLTALANALDLGR---LHHAYLFSGTRG--VGKTTIARLLAKGLNCET-GITATPCGECDNCREIEQGRFVDLI 91 (647)
T ss_pred hcCcHHHHHHHHHHHHcCC---CCeEEEEECCCC--CCHHHHHHHHHHhhhhcc-CCCCCCCCCCHHHHHHHcCCCCCce
Confidence 7999999998887776433 334568999999 999999999999998743 10 0000000 00000110000
Q ss_pred cCCCCCCCCCCchhhHHHHHHhC----CCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCC
Q 003769 656 RSRDVELGCCSYIERLGLALNEN----PHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 656 ~~~~~~~~~~~~~~~L~eavr~~----P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn 731 (796)
.+......+-+.+..|.+.+... +|.|++|||+++. .. ..+|.||..||+ .-.+++|||+|+
T Consensus 92 eidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L--s~-~a~NALLKtLEE-----------Pp~~v~FIL~Tt 157 (647)
T PRK07994 92 EIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML--SR-HSFNALLKTLEE-----------PPEHVKFLLATT 157 (647)
T ss_pred eecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC--CH-HHHHHHHHHHHc-----------CCCCeEEEEecC
Confidence 00000001112223455555544 5789999999999 99 999999999997 346888999876
Q ss_pred C
Q 003769 732 S 732 (796)
Q Consensus 732 ~ 732 (796)
-
T Consensus 158 ~ 158 (647)
T PRK07994 158 D 158 (647)
T ss_pred C
Confidence 3
No 85
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.60 E-value=2.1e-07 Score=112.06 Aligned_cols=122 Identities=13% Similarity=0.196 Sum_probs=76.9
Q ss_pred HHHhh-ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCC
Q 003769 201 NALIN-KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRG 279 (796)
Q Consensus 201 ~~L~r-~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~ 279 (796)
..+.. +..+++|+||||||||++++.++..+. ..++.++.. .. ...++.+.+..+...+... +..
T Consensus 45 ~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~----------~~f~~lna~--~~-~i~dir~~i~~a~~~l~~~-~~~ 110 (725)
T PRK13341 45 RAIKADRVGSLILYGPPGVGKTTLARIIANHTR----------AHFSSLNAV--LA-GVKDLRAEVDRAKERLERH-GKR 110 (725)
T ss_pred HHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc----------Ccceeehhh--hh-hhHHHHHHHHHHHHHhhhc-CCc
Confidence 33444 566899999999999999999998642 345666532 11 1122222333332222222 456
Q ss_pred EEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCcccccccc
Q 003769 280 IVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLENMWK 359 (796)
Q Consensus 280 ~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLerrf~ 359 (796)
.||||||+|.+... ..++ |.+.+ ++|.+.+||+||.+.|.+ .+++|-+|.
T Consensus 111 ~IL~IDEIh~Ln~~------------------qQda----LL~~l----E~g~IiLI~aTTenp~~~---l~~aL~SR~- 160 (725)
T PRK13341 111 TILFIDEVHRFNKA------------------QQDA----LLPWV----ENGTITLIGATTENPYFE---VNKALVSRS- 160 (725)
T ss_pred eEEEEeChhhCCHH------------------HHHH----HHHHh----cCceEEEEEecCCChHhh---hhhHhhccc-
Confidence 89999999998654 1122 33444 489999999999987764 457777764
Q ss_pred ceecccCC
Q 003769 360 LHPFTIPV 367 (796)
Q Consensus 360 lq~V~vp~ 367 (796)
+.+.+|.
T Consensus 161 -~v~~l~p 167 (725)
T PRK13341 161 -RLFRLKS 167 (725)
T ss_pred -cceecCC
Confidence 3444544
No 86
>CHL00181 cbbX CbbX; Provisional
Probab=98.59 E-value=2.2e-07 Score=100.78 Aligned_cols=138 Identities=16% Similarity=0.200 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhhcCCCCCCcchHHHHHHHH---HHHh--hc----cC--CCeEEEEecCCCCCchHHHHHHHHHHHHcCC
Q 003769 565 DENLKVLSDALERKAVVPWQKEIMPEIART---ILEC--RS----KK--EQTWLLFLGADDHNHGKEKIAREIAKVVFGS 633 (796)
Q Consensus 565 ~e~L~~l~~~L~~~~~v~gQ~~av~~ia~~---i~~~--rs----~~--~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~ 633 (796)
...++.+.+.|.+. ++|++++-..|-.. +... |. .. +.--++|.||+| +|||.+|+.+|+.++..
T Consensus 11 ~~~~~~~~~~l~~~--l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pG--tGKT~lAr~la~~~~~~ 86 (287)
T CHL00181 11 KTQIQEVLDILDEE--LVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPG--TGKTTVALKMADILYKL 86 (287)
T ss_pred ccCHHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCC--CCHHHHHHHHHHHHHHc
Confidence 34677889999999 99987776655443 3222 22 22 223489999999 99999999999998742
Q ss_pred C---CCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCEEEEEcccccC-------CCChHHHHHHHH
Q 003769 634 H---SNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHRVFFMEDLDDH-------KVDSCYCQKGLK 703 (796)
Q Consensus 634 ~---~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vvl~deieka-------~~~~~~v~~~l~ 703 (796)
. ...++.++.++. + ..|.|... ....+.+.+-...|+||||++.- +..+ ++++.|+
T Consensus 87 g~~~~~~~~~v~~~~l------~------~~~~g~~~-~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~-e~~~~L~ 152 (287)
T CHL00181 87 GYIKKGHLLTVTRDDL------V------GQYIGHTA-PKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGS-EAIEILL 152 (287)
T ss_pred CCCCCCceEEecHHHH------H------HHHhccch-HHHHHHHHHccCCEEEEEccchhccCCCccchHH-HHHHHHH
Confidence 1 023555554321 0 01223221 23345556666789999999862 1246 8999999
Q ss_pred HHHHcceEecCCCceecCCcEEEEeeCC
Q 003769 704 QAIENGCIALADGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 704 q~~d~G~l~d~~G~~v~~~n~IiilTsn 731 (796)
+.|++++ .+.+||++++
T Consensus 153 ~~me~~~-----------~~~~vI~ag~ 169 (287)
T CHL00181 153 QVMENQR-----------DDLVVIFAGY 169 (287)
T ss_pred HHHhcCC-----------CCEEEEEeCC
Confidence 9998753 5688888764
No 87
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=2.1e-07 Score=109.51 Aligned_cols=133 Identities=17% Similarity=0.136 Sum_probs=83.4
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCC-CceEEecCCCC---cccccccccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHS-NNFTNLSSSQS---RQDDCRTKKR 656 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~-~~~i~~dms~~---~~~~~~~~k~ 656 (796)
|+||+.++..+.+++... +-.-.+||.||.| +|||.+|+.||+.++.... ....+-.+... ..+.|.....
T Consensus 18 IiGQe~v~~~L~~ai~~~---ri~ha~Lf~GPpG--~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~e 92 (624)
T PRK14959 18 VAGQETVKAILSRAAQEN---RVAPAYLFSGTRG--VGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVE 92 (624)
T ss_pred hcCCHHHHHHHHHHHHcC---CCCceEEEECCCC--CCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 789999988888777643 3234788999999 9999999999999986420 00000000000 0001100000
Q ss_pred CCCCCCCCCCchhhHHHHHHhC----CCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 657 SRDVELGCCSYIERLGLALNEN----PHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 657 ~~~~~~~~~~~~~~L~eavr~~----P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
+-.....+-..+..|.+.+... +|.||+|||+++. +. ..++.|++.+|+- -.+++|||+|+.
T Consensus 93 Id~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~L--t~-~a~naLLk~LEEP-----------~~~~ifILaTt~ 158 (624)
T PRK14959 93 IDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHML--TR-EAFNALLKTLEEP-----------PARVTFVLATTE 158 (624)
T ss_pred EecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhC--CH-HHHHHHHHHhhcc-----------CCCEEEEEecCC
Confidence 0000001112234566666644 4799999999999 99 9999999999872 246889997763
No 88
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=3e-07 Score=108.69 Aligned_cols=128 Identities=16% Similarity=0.196 Sum_probs=85.6
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCc-e-------EEecCCCCcccccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNN-F-------TNLSSSQSRQDDCR 652 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~-~-------i~~dms~~~~~~~~ 652 (796)
|+||++++..+...|.. ++..-.+||.||.| +|||++|+.||+.+++.. .. - .+..+... .+.
T Consensus 18 iiGq~~v~~~L~~~i~~---~~~~hayLf~Gp~G--~GKtt~A~~lak~l~c~~-~~~~~~c~~c~~c~~i~~g---~~~ 88 (576)
T PRK14965 18 LTGQEHVSRTLQNAIDT---GRVAHAFLFTGARG--VGKTSTARILAKALNCEQ-GLTAEPCNVCPPCVEITEG---RSV 88 (576)
T ss_pred ccCcHHHHHHHHHHHHc---CCCCeEEEEECCCC--CCHHHHHHHHHHhhcCCC-CCCCCCCCccHHHHHHhcC---CCC
Confidence 89999999888877754 34445678999999 999999999999998653 10 0 00000000 000
Q ss_pred -ccccCCCCCCCCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEE
Q 003769 653 -TKKRSRDVELGCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIII 727 (796)
Q Consensus 653 -~~k~~~~~~~~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~Iii 727 (796)
+...-+ .+..|-+.+..|.+.++..| |+|++|||+++. +. ..+|.|+..||+ .-.+++||
T Consensus 89 d~~eid~-~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~L--t~-~a~naLLk~LEe-----------pp~~~~fI 153 (576)
T PRK14965 89 DVFEIDG-ASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHML--ST-NAFNALLKTLEE-----------PPPHVKFI 153 (576)
T ss_pred Ceeeeec-cCccCHHHHHHHHHHHHhccccCCceEEEEEChhhC--CH-HHHHHHHHHHHc-----------CCCCeEEE
Confidence 000000 00111223346667776666 689999999999 99 999999999997 24688999
Q ss_pred eeCCC
Q 003769 728 FSCDS 732 (796)
Q Consensus 728 lTsn~ 732 (796)
|+|+.
T Consensus 154 l~t~~ 158 (576)
T PRK14965 154 FATTE 158 (576)
T ss_pred EEeCC
Confidence 98863
No 89
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2.3e-07 Score=108.33 Aligned_cols=158 Identities=20% Similarity=0.288 Sum_probs=110.0
Q ss_pred HHHHHHHHHhhcCCCCCCcchHHHHHHHHH--HHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecC
Q 003769 566 ENLKVLSDALERKAVVPWQKEIMPEIARTI--LECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSS 643 (796)
Q Consensus 566 e~L~~l~~~L~~~~~v~gQ~~av~~ia~~i--~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dm 643 (796)
-.|++..+.|.+. =.|=+++-+.|-.-+ +..+.....--++|.||+| ||||.|+|.+|+.+ |. .|+||.+
T Consensus 312 ~Dl~~a~~iLd~d--HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPG--VGKTSLgkSIA~al-~R---kfvR~sL 383 (782)
T COG0466 312 LDLKKAEKILDKD--HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPG--VGKTSLGKSIAKAL-GR---KFVRISL 383 (782)
T ss_pred hhHHHHHHHhccc--ccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCC--CCchhHHHHHHHHh-CC---CEEEEec
Confidence 3678888999998 899998888888854 3333333335789999999 99999999999999 54 4999988
Q ss_pred CCCccccccccccCCCCCCCCCCchhhHHHHHHh----CCCEEEEEcccccCCCCh-HHHHHHHHHHHH---cceEecCC
Q 003769 644 SQSRQDDCRTKKRSRDVELGCCSYIERLGLALNE----NPHRVFFMEDLDDHKVDS-CYCQKGLKQAIE---NGCIALAD 715 (796)
Q Consensus 644 s~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~----~P~~Vvl~deieka~~~~-~~v~~~l~q~~d---~G~l~d~~ 715 (796)
.--. ++.- .|+-| +-|.|+ -.|++..++++ || |||||||||.+.+. -|=-..||.++| +-.++|..
T Consensus 384 GGvr-DEAE-IRGHR-RTYIGa-mPGrIiQ~mkka~~~NP--v~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhY 457 (782)
T COG0466 384 GGVR-DEAE-IRGHR-RTYIGA-MPGKIIQGMKKAGVKNP--VFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHY 457 (782)
T ss_pred Cccc-cHHH-hcccc-cccccc-CChHHHHHHHHhCCcCC--eEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhcc
Confidence 7321 1111 12211 224443 22566666654 66 99999999873220 022347899987 46677765
Q ss_pred -CceecCCcEEEEeeCCCCCCCC
Q 003769 716 -GEIVPLKDSIIIFSCDSLDSVP 737 (796)
Q Consensus 716 -G~~v~~~n~IiilTsn~~~~~s 737 (796)
.-..|+++.+||.|+|+.+..+
T Consensus 458 Lev~yDLS~VmFiaTANsl~tIP 480 (782)
T COG0466 458 LEVPYDLSKVMFIATANSLDTIP 480 (782)
T ss_pred ccCccchhheEEEeecCccccCC
Confidence 4678999999999999876553
No 90
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.57 E-value=4.2e-07 Score=106.52 Aligned_cols=122 Identities=12% Similarity=0.165 Sum_probs=81.4
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHH-------cCCCCCceEEecCCCCc-ccccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVV-------FGSHSNNFTNLSSSQSR-QDDCR 652 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~-------fg~~~~~~i~~dms~~~-~~~~~ 652 (796)
++||++++..+-.++ .+..+ .-+||.||+| +|||.+|+.+.+.. |... ..|+.+|++... .++..
T Consensus 67 iiGqs~~i~~l~~al---~~~~~-~~vLi~Ge~G--tGKt~lAr~i~~~~~~~~~s~~~~~-~~fi~id~~~~~~~~~~~ 139 (531)
T TIGR02902 67 IIGQEEGIKALKAAL---CGPNP-QHVIIYGPPG--VGKTAAARLVLEEAKKNPASPFKEG-AAFVEIDATTARFDERGI 139 (531)
T ss_pred eeCcHHHHHHHHHHH---hCCCC-ceEEEECCCC--CCHHHHHHHHHHHhhhccCCCcCCC-CCEEEEccccccCCcccc
Confidence 799999998776543 12333 4568999999 99999999998753 4434 679999986311 11110
Q ss_pred ccccCCC---CCCCCC------CchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEe
Q 003769 653 TKKRSRD---VELGCC------SYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIA 712 (796)
Q Consensus 653 ~~k~~~~---~~~~~~------~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~ 712 (796)
...+.++ |.|.|. ++.+....++.+....+++||||++. ++ +.|+.|++++++|++.
T Consensus 140 ~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L--~~-~~q~~LL~~Le~~~~~ 205 (531)
T TIGR02902 140 ADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGEL--HP-VQMNKLLKVLEDRKVF 205 (531)
T ss_pred chhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhC--CH-HHHHHHHHHHHhCeee
Confidence 0111121 212222 11122234566677899999999999 99 9999999999999764
No 91
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.57 E-value=5.9e-07 Score=99.83 Aligned_cols=153 Identities=12% Similarity=0.217 Sum_probs=93.7
Q ss_pred ChHHHHHHHHHHhh-----ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCC-CCCCceEEEeeccccccc---------
Q 003769 192 DSDDVMSVLNALIN-----KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPG-DLRYAQFISLPLFSFRNQ--------- 256 (796)
Q Consensus 192 r~~ei~~vi~~L~r-----~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~-~L~~~~v~~l~~~~l~a~--------- 256 (796)
|++|+..+...|.. +..+++|+||||+|||++++.++..+.... +. .. ...++.++.......
T Consensus 20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~-~~~~~-~~~~v~in~~~~~~~~~~~~~i~~ 97 (365)
T TIGR02928 20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAA-EDRDV-RVVTVYVNCQILDTLYQVLVELAN 97 (365)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHh-hccCC-ceEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999863 457899999999999999999998775310 10 01 146677775332110
Q ss_pred ----------chH-HHHHHHHHHHHHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhh
Q 003769 257 ----------SKG-EVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVF 325 (796)
Q Consensus 257 ----------~rg-e~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~ 325 (796)
.+| .+++.++.+++.+... ++++||+|||++.|.+. . . +... +|..+..
T Consensus 98 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~vlvIDE~d~L~~~-----~--~-----------~~L~-~l~~~~~ 157 (365)
T TIGR02928 98 QLRGSGEEVPTTGLSTSEVFRRLYKELNER-GDSLIIVLDEIDYLVGD-----D--D-----------DLLY-QLSRARS 157 (365)
T ss_pred HHhhcCCCCCCCCCCHHHHHHHHHHHHHhc-CCeEEEEECchhhhccC-----C--c-----------HHHH-hHhcccc
Confidence 011 1334455666666543 56799999999999843 1 1 1111 1222210
Q ss_pred hcC-CCCcEEEEEecChHHHHHhhhcCccccccccceecccCCC
Q 003769 326 EIG-ESERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTIPVG 368 (796)
Q Consensus 326 ~~~-~~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp~~ 368 (796)
... ....+.+|++++.-.+.. ..++.+.++|..+.|..|+.
T Consensus 158 ~~~~~~~~v~lI~i~n~~~~~~--~l~~~~~s~~~~~~i~f~p~ 199 (365)
T TIGR02928 158 NGDLDNAKVGVIGISNDLKFRE--NLDPRVKSSLCEEEIIFPPY 199 (365)
T ss_pred ccCCCCCeEEEEEEECCcchHh--hcCHHHhccCCcceeeeCCC
Confidence 001 136789999987655543 35677777775445555553
No 92
>PLN03025 replication factor C subunit; Provisional
Probab=98.56 E-value=3.9e-07 Score=100.15 Aligned_cols=116 Identities=14% Similarity=0.252 Sum_probs=78.3
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCC-CCceEEecCCCCccccccccccCCC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSH-SNNFTNLSSSQSRQDDCRTKKRSRD 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~-~~~~i~~dms~~~~~~~~~~k~~~~ 659 (796)
|+||++++..+...+. .....++||.||+| +|||.+|+++|+.+||.. ...++.++.|+..
T Consensus 15 ~~g~~~~~~~L~~~~~----~~~~~~lll~Gp~G--~GKTtla~~la~~l~~~~~~~~~~eln~sd~~------------ 76 (319)
T PLN03025 15 IVGNEDAVSRLQVIAR----DGNMPNLILSGPPG--TGKTTSILALAHELLGPNYKEAVLELNASDDR------------ 76 (319)
T ss_pred hcCcHHHHHHHHHHHh----cCCCceEEEECCCC--CCHHHHHHHHHHHHhcccCccceeeecccccc------------
Confidence 7899998887765443 22234689999999 999999999999999863 1234444443220
Q ss_pred CCCCCCCchhhHHHH-H------HhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 660 VELGCCSYIERLGLA-L------NENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 660 ~~~~~~~~~~~L~ea-v------r~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
|.+.+..+.+. . ...++.||+|||+|.. .. ..++.|++.++.- . +++.|||+||.
T Consensus 77 ----~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~l--t~-~aq~aL~~~lE~~--~---------~~t~~il~~n~ 138 (319)
T PLN03025 77 ----GIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSM--TS-GAQQALRRTMEIY--S---------NTTRFALACNT 138 (319)
T ss_pred ----cHHHHHHHHHHHHhccccCCCCCeEEEEEechhhc--CH-HHHHHHHHHHhcc--c---------CCceEEEEeCC
Confidence 11111111111 0 1235899999999999 99 9999999999741 1 34668898884
No 93
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.56 E-value=2.6e-07 Score=98.83 Aligned_cols=126 Identities=10% Similarity=0.032 Sum_probs=75.2
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecc------cccccchHH-----HHHHHH--------
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLF------SFRNQSKGE-----VEQKLV-------- 266 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~------~l~a~~rge-----~E~rl~-------- 266 (796)
...+++|.||||||||++|+.||.++ |.+++.++.. .++..+.+. ..+-+.
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~l----------g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~ 89 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKR----------DRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDI 89 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHh----------CCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcc
Confidence 66788999999999999999999854 3456665432 222222111 011000
Q ss_pred --------HHHHHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhh--c---CC----
Q 003769 267 --------ELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFE--I---GE---- 329 (796)
Q Consensus 267 --------~l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~--~---~~---- 329 (796)
-+...++ .+.+|+|||++.+-+. .-+. |..++.. + +.
T Consensus 90 ~~~~~~~g~l~~A~~----~g~~lllDEi~r~~~~---------------------~q~~-Ll~~Le~~~~~i~~~~~~~ 143 (262)
T TIGR02640 90 VRQNWVDNRLTLAVR----EGFTLVYDEFTRSKPE---------------------TNNV-LLSVFEEGVLELPGKRGTS 143 (262)
T ss_pred cceeecCchHHHHHH----cCCEEEEcchhhCCHH---------------------HHHH-HHHHhcCCeEEccCCCCCC
Confidence 1222222 3469999999975433 1122 3334411 0 00
Q ss_pred -----CCcEEEEEecChHHHHHhhhcCccccccccceecccCC
Q 003769 330 -----SERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTIPV 367 (796)
Q Consensus 330 -----~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp~ 367 (796)
.-.+++|+++++..|.--.+.+++|-+||-...+..|+
T Consensus 144 ~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~ 186 (262)
T TIGR02640 144 RYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPD 186 (262)
T ss_pred ceEecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCCC
Confidence 12578999999887765556789999997655555554
No 94
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=2.3e-07 Score=99.62 Aligned_cols=132 Identities=9% Similarity=0.110 Sum_probs=86.9
Q ss_pred eEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhcc---CCCEEEEEcc
Q 003769 210 TVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYM---GRGIVLYLGD 286 (796)
Q Consensus 210 ~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~---~~~~ILfIDE 286 (796)
++|+||||||||+++++|||++.=. .-+.....++++++..++.+++-+|.-+-+.++++.+.... +.=|-+.|||
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSIR-~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDE 258 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSIR-TNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDE 258 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhheee-ecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHH
Confidence 5678999999999999999987533 12345566899999999999988887777777776665431 2336677999
Q ss_pred hhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC---CCCcEEEEEecChHHHHHhhhcCcccccc
Q 003769 287 LKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG---ESERVWIMGIASFQTYTRCKAGHPSLENM 357 (796)
Q Consensus 287 lh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~---~~G~l~~IGatT~~ey~k~~~~dpaLerr 357 (796)
+..|.-+|.+.+.+.|. .++++..|. |+++++ ....+.++++.+..+ ..|-||-.|
T Consensus 259 VESLa~aR~s~~S~~Ep------sDaIRvVNa----lLTQlDrlK~~~NvliL~TSNl~~-----siD~AfVDR 317 (423)
T KOG0744|consen 259 VESLAAARTSASSRNEP------SDAIRVVNA----LLTQLDRLKRYPNVLILATSNLTD-----SIDVAFVDR 317 (423)
T ss_pred HHHHHHHHHhhhcCCCC------chHHHHHHH----HHHHHHHhccCCCEEEEeccchHH-----HHHHHhhhH
Confidence 99999988321111221 246666665 665554 234454444444332 345566554
No 95
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.55 E-value=3.5e-07 Score=111.53 Aligned_cols=134 Identities=14% Similarity=0.123 Sum_probs=82.4
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCce-EEecCC---CCccc--ccccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNF-TNLSSS---QSRQD--DCRTK 654 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~-i~~dms---~~~~~--~~~~~ 654 (796)
|+||+.++..|.+.|... +..-.+||.||.| +|||.+|+.||+.|+..+.... -+-.+. ....+ .+.-.
T Consensus 17 iiGqe~v~~~L~~~i~~~---ri~Ha~Lf~Gp~G--~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv 91 (824)
T PRK07764 17 VIGQEHVTEPLSTALDSG---RINHAYLFSGPRG--CGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDV 91 (824)
T ss_pred hcCcHHHHHHHHHHHHhC---CCCceEEEECCCC--CCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcE
Confidence 899999999888887643 3335689999999 9999999999999986320000 000000 00000 00000
Q ss_pred ccCCCCCCCCCCchhhHHHHH----HhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeC
Q 003769 655 KRSRDVELGCCSYIERLGLAL----NENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSC 730 (796)
Q Consensus 655 k~~~~~~~~~~~~~~~L~eav----r~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTs 730 (796)
..+-.....|-+.+..|.+.+ ....|.||+|||+|+. +. ..+|.||..||+ .=.+++|||+|
T Consensus 92 ~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l--t~-~a~NaLLK~LEE-----------pP~~~~fIl~t 157 (824)
T PRK07764 92 TEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMV--TP-QGFNALLKIVEE-----------PPEHLKFIFAT 157 (824)
T ss_pred EEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhc--CH-HHHHHHHHHHhC-----------CCCCeEEEEEe
Confidence 000000000111112233332 2467789999999999 99 999999999987 22588999987
Q ss_pred CCC
Q 003769 731 DSL 733 (796)
Q Consensus 731 n~~ 733 (796)
+..
T Consensus 158 t~~ 160 (824)
T PRK07764 158 TEP 160 (824)
T ss_pred CCh
Confidence 643
No 96
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=4.7e-07 Score=104.46 Aligned_cols=117 Identities=15% Similarity=0.165 Sum_probs=83.4
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCC--------------------CceEE
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHS--------------------NNFTN 640 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~--------------------~~~i~ 640 (796)
|+||+.++..+..++.. +|..-.+||.||.| +|||++|+.+|+.+..... .+++.
T Consensus 15 liGQe~vv~~L~~a~~~---~ri~ha~Lf~Gp~G--~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~e 89 (491)
T PRK14964 15 LVGQDVLVRILRNAFTL---NKIPQSILLVGASG--VGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIE 89 (491)
T ss_pred hcCcHHHHHHHHHHHHc---CCCCceEEEECCCC--ccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEE
Confidence 79999988877766653 34445788999999 9999999999998853220 12222
Q ss_pred ecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCC
Q 003769 641 LSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADG 716 (796)
Q Consensus 641 ~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G 716 (796)
+|.+. ..|-+.+..+.+.+...| |.|++|||++.. +. ..+|.|+..||+-
T Consensus 90 idaas----------------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~L--s~-~A~NaLLK~LEeP------- 143 (491)
T PRK14964 90 IDAAS----------------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHML--SN-SAFNALLKTLEEP------- 143 (491)
T ss_pred Eeccc----------------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhC--CH-HHHHHHHHHHhCC-------
Confidence 22210 112233445667777666 579999999999 99 9999999999972
Q ss_pred ceecCCcEEEEeeCCC
Q 003769 717 EIVPLKDSIIIFSCDS 732 (796)
Q Consensus 717 ~~v~~~n~IiilTsn~ 732 (796)
=.+++|||+++.
T Consensus 144 ----p~~v~fIlatte 155 (491)
T PRK14964 144 ----APHVKFILATTE 155 (491)
T ss_pred ----CCCeEEEEEeCC
Confidence 257889998763
No 97
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=4e-07 Score=107.88 Aligned_cols=129 Identities=12% Similarity=0.125 Sum_probs=82.2
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCC------cccccc-c
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQS------RQDDCR-T 653 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~------~~~~~~-~ 653 (796)
|+||+.++..+...+.. ++....+||.||.| +|||.+|+.||+.+++.. . ....-+... ..+.|. +
T Consensus 18 IIGQe~vv~~L~~ai~~---~rl~Ha~Lf~GP~G--vGKTTlAriLAk~LnC~~-~-~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 18 LVGQEHVVKALQNALDE---GRLHHAYLLTGTRG--VGKTTIARILAKSLNCEN-A-QHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred HcCcHHHHHHHHHHHHc---CCCCeEEEEECCCC--CcHHHHHHHHHHHhcccC-C-CCCCCCcccHHHHHHhccCccce
Confidence 79999999988888763 34445689999999 999999999999998753 1 100000000 000010 0
Q ss_pred cccCCCCCCCCCCchhhHHHHHHhC----CCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEee
Q 003769 654 KKRSRDVELGCCSYIERLGLALNEN----PHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFS 729 (796)
Q Consensus 654 ~k~~~~~~~~~~~~~~~L~eavr~~----P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilT 729 (796)
..... ....|-+.+..+.+.+... .|+||+|||+++. .. ..+|.|++.|++ .-.+++|||+
T Consensus 91 lEida-As~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L--s~-~A~NALLKtLEE-----------Pp~~v~fILa 155 (709)
T PRK08691 91 LEIDA-ASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML--SK-SAFNAMLKTLEE-----------PPEHVKFILA 155 (709)
T ss_pred EEEec-cccCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc--CH-HHHHHHHHHHHh-----------CCCCcEEEEE
Confidence 00000 0001112223444544443 4689999999999 88 999999999986 1256889998
Q ss_pred CC
Q 003769 730 CD 731 (796)
Q Consensus 730 sn 731 (796)
|+
T Consensus 156 Tt 157 (709)
T PRK08691 156 TT 157 (709)
T ss_pred eC
Confidence 86
No 98
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=5.2e-07 Score=106.30 Aligned_cols=116 Identities=18% Similarity=0.222 Sum_probs=84.6
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCC--------------------CceEE
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHS--------------------NNFTN 640 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~--------------------~~~i~ 640 (796)
|+||+.++..+-.++.. .+..-.+||.||.| +|||.+|+.+|+.+++... .+++.
T Consensus 18 viGq~~v~~~L~~~i~~---~~~~hayLf~Gp~G--tGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~e 92 (559)
T PRK05563 18 VVGQEHITKTLKNAIKQ---GKISHAYLFSGPRG--TGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIE 92 (559)
T ss_pred ccCcHHHHHHHHHHHHc---CCCCeEEEEECCCC--CCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEE
Confidence 89999999888777764 34445788999999 9999999999999985430 11122
Q ss_pred ecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCC
Q 003769 641 LSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADG 716 (796)
Q Consensus 641 ~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G 716 (796)
||.+ ...|...+..+.+.+...| |.||+|||+++. .. .-+|.|+..+++-
T Consensus 93 idaa----------------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~L--t~-~a~naLLKtLEep------- 146 (559)
T PRK05563 93 IDAA----------------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHML--ST-GAFNALLKTLEEP------- 146 (559)
T ss_pred eecc----------------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccC--CH-HHHHHHHHHhcCC-------
Confidence 2111 0112233456777777555 789999999999 98 9999999999764
Q ss_pred ceecCCcEEEEeeCC
Q 003769 717 EIVPLKDSIIIFSCD 731 (796)
Q Consensus 717 ~~v~~~n~IiilTsn 731 (796)
-.++||||+++
T Consensus 147 ----p~~~ifIlatt 157 (559)
T PRK05563 147 ----PAHVIFILATT 157 (559)
T ss_pred ----CCCeEEEEEeC
Confidence 25789999775
No 99
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.53 E-value=6.1e-07 Score=99.26 Aligned_cols=129 Identities=16% Similarity=0.191 Sum_probs=83.4
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCC-ceEEecCCCCc------ccccc-
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSN-NFTNLSSSQSR------QDDCR- 652 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~-~~i~~dms~~~------~~~~~- 652 (796)
|+||++++..+.+.+.. .+....+||.||+| +|||.+|+.+|+.+++.. . ..- .+.... ...|.
T Consensus 16 iig~~~~~~~l~~~~~~---~~~~~~~Ll~G~~G--~GKt~~a~~la~~l~~~~-~~~~~--~c~~c~~c~~~~~~~~~~ 87 (355)
T TIGR02397 16 VIGQEHIVQTLKNAIKN---GRIAHAYLFSGPRG--TGKTSIARIFAKALNCQN-GPDGE--PCNECESCKEINSGSSLD 87 (355)
T ss_pred ccCcHHHHHHHHHHHHc---CCCCeEEEEECCCC--CCHHHHHHHHHHHhcCCC-CCCCC--CCCCCHHHHHHhcCCCCC
Confidence 79999999988887753 44456789999999 999999999999998653 1 110 000000 00000
Q ss_pred ccccCCCCCCCCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEe
Q 003769 653 TKKRSRDVELGCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIF 728 (796)
Q Consensus 653 ~~k~~~~~~~~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~Iiil 728 (796)
....-+ .+..+...+..+.+.+...| ++||++||+|+. .. ..++.|+..+++- -.+++||+
T Consensus 88 ~~~~~~-~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l--~~-~~~~~Ll~~le~~-----------~~~~~lIl 152 (355)
T TIGR02397 88 VIEIDA-ASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHML--SK-SAFNALLKTLEEP-----------PEHVVFIL 152 (355)
T ss_pred EEEeec-cccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhc--CH-HHHHHHHHHHhCC-----------ccceeEEE
Confidence 000000 00011122345666666655 579999999999 88 8999999999762 24688888
Q ss_pred eCCC
Q 003769 729 SCDS 732 (796)
Q Consensus 729 Tsn~ 732 (796)
+++.
T Consensus 153 ~~~~ 156 (355)
T TIGR02397 153 ATTE 156 (355)
T ss_pred EeCC
Confidence 8764
No 100
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=6.4e-07 Score=101.44 Aligned_cols=129 Identities=17% Similarity=0.229 Sum_probs=80.5
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEE------ecCC--CCc-----
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTN------LSSS--QSR----- 647 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~------~dms--~~~----- 647 (796)
|+||+.++..+.+.+.. ++-.-.+||.||+| +|||.+|+.+|+.+++.. . ... .+.. ...
T Consensus 18 iiGq~~~~~~L~~~~~~---~~~~ha~lf~Gp~G--~GKtt~A~~~a~~l~c~~-~-~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 18 ITAQEHITRTIQNSLRM---GRVGHGYIFSGLRG--VGKTTAARVFAKAVNCQR-M-IDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred ccChHHHHHHHHHHHHh---CCcceeEEEECCCC--CCHHHHHHHHHHHhcCCC-C-cCcccccccCCCCCCCCHHHHHH
Confidence 89999999877666653 33344678999999 999999999999998742 0 000 0000 000
Q ss_pred -ccccc-ccccCCCCCCCCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecC
Q 003769 648 -QDDCR-TKKRSRDVELGCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPL 721 (796)
Q Consensus 648 -~~~~~-~~k~~~~~~~~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~ 721 (796)
.+.|. ....-+ .+..+-..+..+.+.+...| |+||++||+++. +. .-++.|+..+++ .-
T Consensus 91 ~~~~~~n~~~~~~-~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l--~~-~~~~~LLk~LEe-----------p~ 155 (397)
T PRK14955 91 DAGTSLNISEFDA-ASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHML--SI-AAFNAFLKTLEE-----------PP 155 (397)
T ss_pred hcCCCCCeEeecc-cccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhC--CH-HHHHHHHHHHhc-----------CC
Confidence 00000 000000 00011122345667776555 689999999999 88 889999999975 23
Q ss_pred CcEEEEeeCC
Q 003769 722 KDSIIIFSCD 731 (796)
Q Consensus 722 ~n~IiilTsn 731 (796)
..++||++++
T Consensus 156 ~~t~~Il~t~ 165 (397)
T PRK14955 156 PHAIFIFATT 165 (397)
T ss_pred CCeEEEEEeC
Confidence 4777888765
No 101
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.52 E-value=7.4e-07 Score=96.26 Aligned_cols=137 Identities=14% Similarity=0.222 Sum_probs=90.6
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecc--------------cccc--cchHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLF--------------SFRN--QSKGEVEQKLVELS 269 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~--------------~l~a--~~rge~E~rl~~l~ 269 (796)
+..|.+|||+++.|||+|++-.+..--...-++ -....|+.+.+- +|.+ +.+....++-..++
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~-~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~ 138 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED-AERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVL 138 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC-CccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHH
Confidence 668999999999999999998887432221111 123467777641 2222 22333333333344
Q ss_pred HHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhh
Q 003769 270 CHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKA 349 (796)
Q Consensus 270 ~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~ 349 (796)
..++.. +.=+|+|||+|.+.- |+... .-+..|. ||.|. ..-.+-+||++|.+.|. .+.
T Consensus 139 ~llr~~--~vrmLIIDE~H~lLa------Gs~~~--------qr~~Ln~-LK~L~----NeL~ipiV~vGt~~A~~-al~ 196 (302)
T PF05621_consen 139 RLLRRL--GVRMLIIDEFHNLLA------GSYRK--------QREFLNA-LKFLG----NELQIPIVGVGTREAYR-ALR 196 (302)
T ss_pred HHHHHc--CCcEEEeechHHHhc------ccHHH--------HHHHHHH-HHHHh----hccCCCeEEeccHHHHH-Hhc
Confidence 555542 446999999999764 33221 2356666 88775 35679999999999998 689
Q ss_pred cCccccccccceecccCC
Q 003769 350 GHPSLENMWKLHPFTIPV 367 (796)
Q Consensus 350 ~dpaLerrf~lq~V~vp~ 367 (796)
.||-|++|| .++.+|.
T Consensus 197 ~D~QLa~RF--~~~~Lp~ 212 (302)
T PF05621_consen 197 TDPQLASRF--EPFELPR 212 (302)
T ss_pred cCHHHHhcc--CCccCCC
Confidence 999999997 5666664
No 102
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.52 E-value=6.5e-07 Score=98.09 Aligned_cols=116 Identities=11% Similarity=0.135 Sum_probs=85.2
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCC---CCC---Cch-hhHHHHHHhC
Q 003769 606 WLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVEL---GCC---SYI-ERLGLALNEN 678 (796)
Q Consensus 606 ~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~---~~~---~~~-~~L~eavr~~ 678 (796)
-+|+.||+| +|||.+|+.||+.+ |- .++++++++. ... ..++|...+ .|. .+. |-|+.|.+++
T Consensus 66 ~ilL~G~pG--tGKTtla~~lA~~l-~~---~~~rV~~~~~-l~~---~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g 135 (327)
T TIGR01650 66 RVMVQGYHG--TGKSTHIEQIAARL-NW---PCVRVNLDSH-VSR---IDLVGKDAIVLKDGKQITEFRDGILPWALQHN 135 (327)
T ss_pred cEEEEeCCC--ChHHHHHHHHHHHH-CC---CeEEEEecCC-CCh---hhcCCCceeeccCCcceeEEecCcchhHHhCC
Confidence 589999999 99999999999999 43 4899998754 111 122332111 111 112 5688888755
Q ss_pred CCEEEEEcccccCCCChHHHHHHHHHHHH-cceEec-CCCceecC-CcEEEEeeCCCCCCC
Q 003769 679 PHRVFFMEDLDDHKVDSCYCQKGLKQAIE-NGCIAL-ADGEIVPL-KDSIIIFSCDSLDSV 736 (796)
Q Consensus 679 P~~Vvl~deieka~~~~~~v~~~l~q~~d-~G~l~d-~~G~~v~~-~n~IiilTsn~~~~~ 736 (796)
.++|||||+.| +| ++++.|..++| +|.++- ..|+.+.- .+-.+|.|.|...+.
T Consensus 136 --~illlDEin~a--~p-~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~G 191 (327)
T TIGR01650 136 --VALCFDEYDAG--RP-DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLG 191 (327)
T ss_pred --eEEEechhhcc--CH-HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcC
Confidence 67999999999 99 99999999999 568875 45788844 478899999976544
No 103
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=5.4e-07 Score=103.99 Aligned_cols=126 Identities=14% Similarity=0.180 Sum_probs=80.1
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceE----------EecCCCCcccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFT----------NLSSSQSRQDD 650 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i----------~~dms~~~~~~ 650 (796)
|+||++++..+...+. +++....+||.||+| +|||++|+.+|+.++... .... .++.... .+-
T Consensus 16 ivGq~~i~~~L~~~i~---~~~l~~~~Lf~GPpG--tGKTTlA~~lA~~l~~~~-~~~~~pc~~c~~c~~i~~g~~-~dv 88 (472)
T PRK14962 16 VVGQDHVKKLIINALK---KNSISHAYIFAGPRG--TGKTTVARILAKSLNCEN-RKGVEPCNECRACRSIDEGTF-MDV 88 (472)
T ss_pred ccCcHHHHHHHHHHHH---cCCCCeEEEEECCCC--CCHHHHHHHHHHHhcccc-CCCCCCCcccHHHHHHhcCCC-Ccc
Confidence 8999998776665554 234445689999999 999999999999998643 1100 0111100 000
Q ss_pred ccccccCCCCCCCCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEE
Q 003769 651 CRTKKRSRDVELGCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSII 726 (796)
Q Consensus 651 ~~~~k~~~~~~~~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~Ii 726 (796)
. .... ....|-+.+..+.+.++..| +.||++||++.. .. ..++.|+..+++- -.++++
T Consensus 89 ~---el~a-a~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~L--t~-~a~~~LLk~LE~p-----------~~~vv~ 150 (472)
T PRK14962 89 I---ELDA-ASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHML--TK-EAFNALLKTLEEP-----------PSHVVF 150 (472)
T ss_pred E---EEeC-cccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHh--HH-HHHHHHHHHHHhC-----------CCcEEE
Confidence 0 0000 00112222345666666555 689999999999 88 8999999999851 135778
Q ss_pred EeeCC
Q 003769 727 IFSCD 731 (796)
Q Consensus 727 ilTsn 731 (796)
|++|+
T Consensus 151 Ilatt 155 (472)
T PRK14962 151 VLATT 155 (472)
T ss_pred EEEeC
Confidence 87665
No 104
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.50 E-value=5.1e-07 Score=98.01 Aligned_cols=82 Identities=9% Similarity=0.095 Sum_probs=49.9
Q ss_pred ChHHHHHHHHHHh-----h-ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHH
Q 003769 192 DSDDVMSVLNALI-----N-KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKL 265 (796)
Q Consensus 192 r~~ei~~vi~~L~-----r-~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl 265 (796)
+++.+..+...+. . ..++++|+||||||||++++.+|..+. ..+..++...+. ..++
T Consensus 9 ~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~----------~~~~~~~~~~~~--~~~~----- 71 (305)
T TIGR00635 9 QEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMG----------VNLKITSGPALE--KPGD----- 71 (305)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC----------CCEEEeccchhc--Cchh-----
Confidence 4455555544443 1 345789999999999999999998763 223333322111 1222
Q ss_pred HHHHHHHHhccCCCEEEEEcchhhhhhh
Q 003769 266 VELSCHVKSYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 266 ~~l~~~v~~~~~~~~ILfIDElh~l~~~ 293 (796)
+...+... +.+.||||||+|.+.+.
T Consensus 72 --l~~~l~~~-~~~~vl~iDEi~~l~~~ 96 (305)
T TIGR00635 72 --LAAILTNL-EEGDVLFIDEIHRLSPA 96 (305)
T ss_pred --HHHHHHhc-ccCCEEEEehHhhhCHH
Confidence 22223332 45689999999988654
No 105
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.49 E-value=6.9e-07 Score=102.74 Aligned_cols=131 Identities=11% Similarity=0.116 Sum_probs=84.3
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCce---E---EecCCCCcccccc-c
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNF---T---NLSSSQSRQDDCR-T 653 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~---i---~~dms~~~~~~~~-~ 653 (796)
|+||+.++..+-+.+.. ++....+||.||+| +|||++|+.+|+.+++.. ..- . +.++.....+.|. .
T Consensus 19 iiGq~~~v~~L~~~i~~---~~i~ha~Lf~Gp~G--~GKtt~A~~lAk~l~c~~-~~~~~~~c~~c~~C~~i~~~~~~d~ 92 (451)
T PRK06305 19 ILGQDAVVAVLKNALRF---NRAAHAYLFSGIRG--TGKTTLARIFAKALNCQN-PTEDQEPCNQCASCKEISSGTSLDV 92 (451)
T ss_pred hcCcHHHHHHHHHHHHc---CCCceEEEEEcCCC--CCHHHHHHHHHHHhcCCC-cccCCCCCcccHHHHHHhcCCCCce
Confidence 89999999887777753 34446788999999 999999999999999753 110 0 0000000001110 0
Q ss_pred cccCCCCCCCCCCchhhHHHHHHh----CCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEee
Q 003769 654 KKRSRDVELGCCSYIERLGLALNE----NPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFS 729 (796)
Q Consensus 654 ~k~~~~~~~~~~~~~~~L~eavr~----~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilT 729 (796)
....|. ...|...+..+.+.+.. .+|+||+|||+++. .. ..++.|++.+++- . .+++||++
T Consensus 93 ~~i~g~-~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~l--t~-~~~n~LLk~lEep-----~------~~~~~Il~ 157 (451)
T PRK06305 93 LEIDGA-SHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHML--TK-EAFNSLLKTLEEP-----P------QHVKFFLA 157 (451)
T ss_pred EEeecc-ccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhh--CH-HHHHHHHHHhhcC-----C------CCceEEEE
Confidence 011111 01122333456666654 46899999999999 98 9999999999871 1 36688887
Q ss_pred CCC
Q 003769 730 CDS 732 (796)
Q Consensus 730 sn~ 732 (796)
||.
T Consensus 158 t~~ 160 (451)
T PRK06305 158 TTE 160 (451)
T ss_pred eCC
Confidence 763
No 106
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.48 E-value=7.1e-07 Score=104.81 Aligned_cols=139 Identities=12% Similarity=0.156 Sum_probs=97.1
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCC-
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD- 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~- 659 (796)
++|+..++..+.+.+.+.- +...++|+.|++| +||+.+|+.|........ ..|+.+|++... +....+.+.|.
T Consensus 198 liG~s~~~~~~~~~~~~~a--~~~~pvli~Ge~G--tGK~~lA~~ih~~s~r~~-~pfv~i~c~~~~-~~~~~~~lfg~~ 271 (534)
T TIGR01817 198 IIGKSPAMRQVVDQARVVA--RSNSTVLLRGESG--TGKELIAKAIHYLSPRAK-RPFVKVNCAALS-ETLLESELFGHE 271 (534)
T ss_pred eEECCHHHHHHHHHHHHHh--CcCCCEEEECCCC--ccHHHHHHHHHHhCCCCC-CCeEEeecCCCC-HHHHHHHHcCCC
Confidence 8999999999988887664 3456889999999 999999999999887666 789999998662 22211112121
Q ss_pred C-CCCCCC--chhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 660 V-ELGCCS--YIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 660 ~-~~~~~~--~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
. .|.|.. ..|.+. .--..+++|||||+. ++ .+|..|++++++|.++-..|.+.---|+-||+||+.
T Consensus 272 ~~~~~~~~~~~~g~~~----~a~~GtL~ldei~~L--~~-~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 272 KGAFTGAIAQRKGRFE----LADGGTLFLDEIGEI--SP-AFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNR 340 (534)
T ss_pred CCccCCCCcCCCCccc----ccCCCeEEEechhhC--CH-HHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCC
Confidence 1 111110 011222 122578999999999 99 999999999999998754442222235567887763
No 107
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=8.9e-07 Score=103.66 Aligned_cols=130 Identities=12% Similarity=0.154 Sum_probs=82.2
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCC------cccccccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQS------RQDDCRTK 654 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~------~~~~~~~~ 654 (796)
|+||+.++..+..++.. ++..-.+||.||.| +|||.+|+.+|+.+++.. . ...-.+... ..+.|.-.
T Consensus 18 ivGq~~v~~~L~~~i~~---~~~~ha~Lf~Gp~G--~GKTt~A~~lAk~l~c~~-~-~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 18 LVGQEHVVRALTNALEQ---QRLHHAYLFTGTRG--VGKTTLARILAKSLNCET-G-VTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred hcCcHHHHHHHHHHHHc---CCCCEEEEEECCCC--CCHHHHHHHHHHHhcCCC-C-CCCCCCCCCHHHHHHhcCCCCce
Confidence 78999999988888764 33444678999999 999999999999998743 1 000000000 00001000
Q ss_pred ccCCCCCCCCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeC
Q 003769 655 KRSRDVELGCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSC 730 (796)
Q Consensus 655 k~~~~~~~~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTs 730 (796)
-........+...+..|.+.+...| |.||+|||+|+. .. ..+|.|+..+|+- -.+++|||+|
T Consensus 91 ~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l--s~-~a~naLLK~LEep-----------p~~~~fIL~t 156 (527)
T PRK14969 91 IEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHML--SK-SAFNAMLKTLEEP-----------PEHVKFILAT 156 (527)
T ss_pred eEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccC--CH-HHHHHHHHHHhCC-----------CCCEEEEEEe
Confidence 0000000011112234555565555 589999999999 88 8999999999872 2578888877
Q ss_pred C
Q 003769 731 D 731 (796)
Q Consensus 731 n 731 (796)
+
T Consensus 157 ~ 157 (527)
T PRK14969 157 T 157 (527)
T ss_pred C
Confidence 5
No 108
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.48 E-value=8.6e-07 Score=96.03 Aligned_cols=136 Identities=15% Similarity=0.172 Sum_probs=89.1
Q ss_pred HHHHHHHHhhcCCCCCCcchHHHHHHHHHHH-----hhc------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCC-
Q 003769 567 NLKVLSDALERKAVVPWQKEIMPEIARTILE-----CRS------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSH- 634 (796)
Q Consensus 567 ~L~~l~~~L~~~~~v~gQ~~av~~ia~~i~~-----~rs------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~- 634 (796)
.++.+.+.|... ++|++++-..|.+.+.. .|. ..|..-++|.||+| +|||.+|+++|+.++...
T Consensus 12 ~~~~~~~~l~~~--l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pG--TGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 12 GITEVLDQLDRE--LIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPG--TGKTTVALRMAQILHRLGY 87 (284)
T ss_pred cHHHHHHHHHHh--ccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCC--CCHHHHHHHHHHHHHHcCC
Confidence 466677788888 89988877776554332 222 22334689999999 999999999999987421
Q ss_pred --CCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCEEEEEcccccC-------CCChHHHHHHHHHH
Q 003769 635 --SNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHRVFFMEDLDDH-------KVDSCYCQKGLKQA 705 (796)
Q Consensus 635 --~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vvl~deieka-------~~~~~~v~~~l~q~ 705 (796)
...|+.++.++. +. .|.|... ..+.+.+.+--..|++||||+.. +... ++++.|++.
T Consensus 88 ~~~~~~v~v~~~~l------~~------~~~g~~~-~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~-~~~~~Ll~~ 153 (284)
T TIGR02880 88 VRKGHLVSVTRDDL------VG------QYIGHTA-PKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQ-EAIEILLQV 153 (284)
T ss_pred cccceEEEecHHHH------hH------hhcccch-HHHHHHHHHccCcEEEEechhhhccCCCccchHH-HHHHHHHHH
Confidence 024777765321 00 1223221 23334444434489999999854 1235 788999999
Q ss_pred HHcceEecCCCceecCCcEEEEeeCC
Q 003769 706 IENGCIALADGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 706 ~d~G~l~d~~G~~v~~~n~IiilTsn 731 (796)
|++++ .+.+||++++
T Consensus 154 le~~~-----------~~~~vI~a~~ 168 (284)
T TIGR02880 154 MENQR-----------DDLVVILAGY 168 (284)
T ss_pred HhcCC-----------CCEEEEEeCC
Confidence 98753 6778888764
No 109
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.48 E-value=5.9e-07 Score=95.29 Aligned_cols=82 Identities=12% Similarity=0.170 Sum_probs=56.1
Q ss_pred ChHHHHHHHHHHhh-------ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHH
Q 003769 192 DSDDVMSVLNALIN-------KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQK 264 (796)
Q Consensus 192 r~~ei~~vi~~L~r-------~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~r 264 (796)
..+.++.-+++.-+ .--+++|+||||.|||+++.-+|..+. +.+...+...+. |
T Consensus 30 GQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg----------vn~k~tsGp~le---------K 90 (332)
T COG2255 30 GQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELG----------VNLKITSGPALE---------K 90 (332)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhc----------CCeEeccccccc---------C
Confidence 45777777777654 234789999999999999999999873 344444433322 2
Q ss_pred HHHHHHHHHhccCCCEEEEEcchhhhhhh
Q 003769 265 LVELSCHVKSYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 265 l~~l~~~v~~~~~~~~ILfIDElh~l~~~ 293 (796)
-.+|...+... ..+-||||||||.+...
T Consensus 91 ~gDlaaiLt~L-e~~DVLFIDEIHrl~~~ 118 (332)
T COG2255 91 PGDLAAILTNL-EEGDVLFIDEIHRLSPA 118 (332)
T ss_pred hhhHHHHHhcC-CcCCeEEEehhhhcChh
Confidence 33444444433 45789999999999764
No 110
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.47 E-value=7.2e-07 Score=104.67 Aligned_cols=132 Identities=18% Similarity=0.168 Sum_probs=85.5
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCc-----cccccccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSR-----QDDCRTKK 655 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~-----~~~~~~~k 655 (796)
|+||+.++..+.+++... +..-.+||.||.| +|||.+|+.+|+.+++.. ..-........+ ...|.-..
T Consensus 18 IIGQe~iv~~L~~aI~~~---rl~hA~Lf~GP~G--vGKTTlA~~lAk~L~C~~-~~~~~~Cg~C~sCr~i~~~~h~Dii 91 (605)
T PRK05896 18 IIGQELIKKILVNAILNN---KLTHAYIFSGPRG--IGKTSIAKIFAKAINCLN-PKDGDCCNSCSVCESINTNQSVDIV 91 (605)
T ss_pred hcCcHHHHHHHHHHHHcC---CCCceEEEECCCC--CCHHHHHHHHHHHhcCCC-CCCCCCCcccHHHHHHHcCCCCceE
Confidence 789999998888777543 3335788999999 999999999999998643 110000000000 00000000
Q ss_pred cCCCCCCCCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCC
Q 003769 656 RSRDVELGCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 656 ~~~~~~~~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn 731 (796)
.+......|-+.+..+.+.+...| |+||+|||++.. +. ..++.|+..+|+. -.++++||+|+
T Consensus 92 eIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~L--t~-~A~NaLLKtLEEP-----------p~~tvfIL~Tt 157 (605)
T PRK05896 92 ELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHML--ST-SAWNALLKTLEEP-----------PKHVVFIFATT 157 (605)
T ss_pred EeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhC--CH-HHHHHHHHHHHhC-----------CCcEEEEEECC
Confidence 000000112233456667677666 589999999999 99 9999999999872 35788998886
Q ss_pred C
Q 003769 732 S 732 (796)
Q Consensus 732 ~ 732 (796)
.
T Consensus 158 ~ 158 (605)
T PRK05896 158 E 158 (605)
T ss_pred C
Confidence 4
No 111
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.47 E-value=6.8e-07 Score=84.97 Aligned_cols=102 Identities=20% Similarity=0.248 Sum_probs=75.4
Q ss_pred HHHHHHHHhhcCCCCCCcchHHHHHHHHHHHhhc----cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCC--CCCceEE
Q 003769 567 NLKVLSDALERKAVVPWQKEIMPEIARTILECRS----KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGS--HSNNFTN 640 (796)
Q Consensus 567 ~L~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~rs----~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~--~~~~~i~ 640 (796)
++..|+..|+++ +.||.-|++.|.++|..--. +|| -.+-|.||+| +||+.+|+-||+.+|.+ . .+++.
T Consensus 15 ~~~~L~~~L~~~--l~GQhla~~~v~~ai~~~l~~~~p~Kp-LVlSfHG~tG--tGKn~v~~liA~~ly~~G~~-S~~V~ 88 (127)
T PF06309_consen 15 NITGLEKDLQRN--LFGQHLAVEVVVNAIKGHLANPNPRKP-LVLSFHGWTG--TGKNFVSRLIAEHLYKSGMK-SPFVH 88 (127)
T ss_pred CHHHHHHHHHHH--ccCcHHHHHHHHHHHHHHHcCCCCCCC-EEEEeecCCC--CcHHHHHHHHHHHHHhcccC-CCcee
Confidence 567799999999 99999999999999987765 445 7889999999 99999999999999965 3 44555
Q ss_pred ecCCCC-ccccccccccCCCCCCCCCCch----hhHHHHHHhCCCEEEEE
Q 003769 641 LSSSQS-RQDDCRTKKRSRDVELGCCSYI----ERLGLALNENPHRVFFM 685 (796)
Q Consensus 641 ~dms~~-~~~~~~~~k~~~~~~~~~~~~~----~~L~eavr~~P~~Vvl~ 685 (796)
.=++.. ..... .-..|- ..+.+.|++-|.++++|
T Consensus 89 ~f~~~~hFP~~~-----------~v~~Yk~~L~~~I~~~v~~C~rslFIF 127 (127)
T PF06309_consen 89 QFIATHHFPHNS-----------NVDEYKEQLKSWIRGNVSRCPRSLFIF 127 (127)
T ss_pred eecccccCCCch-----------HHHHHHHHHHHHHHHHHHhCCcCeeeC
Confidence 333211 00000 001343 46777788889999876
No 112
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=8.9e-07 Score=98.97 Aligned_cols=118 Identities=19% Similarity=0.249 Sum_probs=81.5
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCC----C--ceEEecCCCCcccccccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHS----N--NFTNLSSSQSRQDDCRTK 654 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~----~--~~i~~dms~~~~~~~~~~ 654 (796)
|+||++++..+.+.+.. ++..-.+||.||+| +|||++|+++|+.+++... + ++..+++...
T Consensus 19 iig~~~~~~~l~~~i~~---~~~~~~~L~~G~~G--~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~-------- 85 (367)
T PRK14970 19 VVGQSHITNTLLNAIEN---NHLAQALLFCGPRG--VGKTTCARILARKINQPGYDDPNEDFSFNIFELDAA-------- 85 (367)
T ss_pred cCCcHHHHHHHHHHHHc---CCCCeEEEEECCCC--CCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccc--------
Confidence 79999999888887753 33445899999999 9999999999999986310 1 1111111100
Q ss_pred ccCCCCCCCCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeC
Q 003769 655 KRSRDVELGCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSC 730 (796)
Q Consensus 655 k~~~~~~~~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTs 730 (796)
+..+...+..+.+.++..| ++||++||+++. +. ..++.|+..+++ .-.+++||+++
T Consensus 86 ------~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l--~~-~~~~~ll~~le~-----------~~~~~~~Il~~ 145 (367)
T PRK14970 86 ------SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHML--SS-AAFNAFLKTLEE-----------PPAHAIFILAT 145 (367)
T ss_pred ------cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhc--CH-HHHHHHHHHHhC-----------CCCceEEEEEe
Confidence 0011122345555555544 689999999999 88 889999998875 13468888887
Q ss_pred C
Q 003769 731 D 731 (796)
Q Consensus 731 n 731 (796)
+
T Consensus 146 ~ 146 (367)
T PRK14970 146 T 146 (367)
T ss_pred C
Confidence 5
No 113
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.47 E-value=1e-06 Score=82.43 Aligned_cols=129 Identities=19% Similarity=0.179 Sum_probs=86.5
Q ss_pred CCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCC
Q 003769 582 PWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVE 661 (796)
Q Consensus 582 ~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~ 661 (796)
+||+.++..|...+.. ....++++.||+| +|||.+++++++.++... ..++.++.++...... ...
T Consensus 1 ~~~~~~~~~i~~~~~~----~~~~~v~i~G~~G--~GKT~l~~~i~~~~~~~~-~~v~~~~~~~~~~~~~-~~~------ 66 (151)
T cd00009 1 VGQEEAIEALREALEL----PPPKNLLLYGPPG--TGKTTLARAIANELFRPG-APFLYLNASDLLEGLV-VAE------ 66 (151)
T ss_pred CchHHHHHHHHHHHhC----CCCCeEEEECCCC--CCHHHHHHHHHHHhhcCC-CCeEEEehhhhhhhhH-HHH------
Confidence 4677777777666542 2445899999999 999999999999997666 7788888875421111 000
Q ss_pred CCCCCchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 662 LGCCSYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 662 ~~~~~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
..+.............+...+|++||++.. .+ .....+++.++.....- ....++.||+|+|.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~lilDe~~~~--~~-~~~~~~~~~i~~~~~~~-----~~~~~~~ii~~~~~ 129 (151)
T cd00009 67 LFGHFLVRLLFELAEKAKPGVLFIDEIDSL--SR-GAQNALLRVLETLNDLR-----IDRENVRVIGATNR 129 (151)
T ss_pred HhhhhhHhHHHHhhccCCCeEEEEeChhhh--hH-HHHHHHHHHHHhcCcee-----ccCCCeEEEEecCc
Confidence 000000011122334456789999999999 88 88888999888764431 33467889998874
No 114
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.47 E-value=8.5e-07 Score=104.92 Aligned_cols=132 Identities=11% Similarity=0.140 Sum_probs=87.9
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCc---eEEecCCCCc-------ccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNN---FTNLSSSQSR-------QDD 650 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~---~i~~dms~~~-------~~~ 650 (796)
|+||+.++..+.+++.. .|..-.+||.||.| +|||.+|+.||+.++... .. -.++++.... .+.
T Consensus 26 liGq~~~v~~L~~~~~~---gri~ha~L~~Gp~G--vGKTt~Ar~lAk~L~c~~-~~~~~~~~~~~cg~c~~C~~i~~g~ 99 (598)
T PRK09111 26 LIGQEAMVRTLTNAFET---GRIAQAFMLTGVRG--VGKTTTARILARALNYEG-PDGDGGPTIDLCGVGEHCQAIMEGR 99 (598)
T ss_pred hcCcHHHHHHHHHHHHc---CCCCceEEEECCCC--CCHHHHHHHHHHhhCcCC-ccccCCCccccCcccHHHHHHhcCC
Confidence 89999999999888764 33344677999999 999999999999998653 11 1122222110 011
Q ss_pred ccccccCCCCCCCCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEE
Q 003769 651 CRTKKRSRDVELGCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSII 726 (796)
Q Consensus 651 ~~~~k~~~~~~~~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~Ii 726 (796)
|.-..........|-+.+..+.+.++..| |+||++||++.. .. .-+|.|+..+++ .-.+++|
T Consensus 100 h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~L--s~-~a~naLLKtLEe-----------Pp~~~~f 165 (598)
T PRK09111 100 HVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHML--ST-AAFNALLKTLEE-----------PPPHVKF 165 (598)
T ss_pred CCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhC--CH-HHHHHHHHHHHh-----------CCCCeEE
Confidence 11000000001112233346777787776 789999999999 98 999999999987 3457889
Q ss_pred EeeCCC
Q 003769 727 IFSCDS 732 (796)
Q Consensus 727 ilTsn~ 732 (796)
||+++.
T Consensus 166 Il~tte 171 (598)
T PRK09111 166 IFATTE 171 (598)
T ss_pred EEEeCC
Confidence 998753
No 115
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=1.1e-06 Score=102.38 Aligned_cols=132 Identities=16% Similarity=0.143 Sum_probs=82.4
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCce-EEecCC---CCcccccccccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNF-TNLSSS---QSRQDDCRTKKR 656 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~-i~~dms---~~~~~~~~~~k~ 656 (796)
|+||+.++..+-+.+.. ++....+||.||+| +|||.+|+.+|+.++... ... .+-.+. ......|.....
T Consensus 16 vvGq~~v~~~L~~~i~~---~~l~ha~Lf~GppG--tGKTTlA~~lA~~l~c~~-~~~~~cg~C~sc~~i~~~~h~dv~e 89 (504)
T PRK14963 16 VVGQEHVKEVLLAALRQ---GRLGHAYLFSGPRG--VGKTTTARLIAMAVNCSG-EDPKPCGECESCLAVRRGAHPDVLE 89 (504)
T ss_pred hcChHHHHHHHHHHHHc---CCCCeEEEEECCCC--CCHHHHHHHHHHHHhccC-CCCCCCCcChhhHHHhcCCCCceEE
Confidence 89999998888777664 33445678999999 999999999999997532 110 000000 000000100000
Q ss_pred CCCCCCCCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 657 SRDVELGCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 657 ~~~~~~~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
+...+..+-..+..+.+.+...| +.||+|||++.. .. ..++.|+..+++. -.+++||++++.
T Consensus 90 l~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l--s~-~a~naLLk~LEep-----------~~~t~~Il~t~~ 155 (504)
T PRK14963 90 IDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM--SK-SAFNALLKTLEEP-----------PEHVIFILATTE 155 (504)
T ss_pred ecccccCCHHHHHHHHHHHhhccccCCCeEEEEECcccc--CH-HHHHHHHHHHHhC-----------CCCEEEEEEcCC
Confidence 00000111122345666666544 679999999999 88 8999999999872 257888888763
No 116
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=1e-06 Score=98.71 Aligned_cols=133 Identities=12% Similarity=0.104 Sum_probs=83.5
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCce-------EEecCCCCc------
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNF-------TNLSSSQSR------ 647 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~-------i~~dms~~~------ 647 (796)
|+||++++..+.+++.+-|- .-.+||.||.| +||+.+|.++|+.+++.....- ..++.....
T Consensus 21 iiGq~~~~~~L~~~~~~~rl---~HA~Lf~Gp~G--~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i 95 (365)
T PRK07471 21 LFGHAAAEAALLDAYRSGRL---HHAWLIGGPQG--IGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRI 95 (365)
T ss_pred ccChHHHHHHHHHHHHcCCC---CceEEEECCCC--CCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHH
Confidence 89999999999988775443 33566999999 9999999999999997541110 011111000
Q ss_pred -cccccccccCCC-CCCCCC---C--chh---hHHHHHHh----CCCEEEEEcccccCCCChHHHHHHHHHHHHcceEec
Q 003769 648 -QDDCRTKKRSRD-VELGCC---S--YIE---RLGLALNE----NPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIAL 713 (796)
Q Consensus 648 -~~~~~~~k~~~~-~~~~~~---~--~~~---~L~eavr~----~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d 713 (796)
.+.|.-...+.. +...+. . .++ .|.+.+.. ..+.||+|||+|.. ++ ..+|.|+..+++-.
T Consensus 96 ~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m--~~-~aanaLLK~LEepp--- 169 (365)
T PRK07471 96 AAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM--NA-NAANALLKVLEEPP--- 169 (365)
T ss_pred HccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc--CH-HHHHHHHHHHhcCC---
Confidence 011110000100 001110 0 122 33344333 55689999999999 99 99999999998743
Q ss_pred CCCceecCCcEEEEeeCCC
Q 003769 714 ADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 714 ~~G~~v~~~n~IiilTsn~ 732 (796)
.+++|||+|+.
T Consensus 170 --------~~~~~IL~t~~ 180 (365)
T PRK07471 170 --------ARSLFLLVSHA 180 (365)
T ss_pred --------CCeEEEEEECC
Confidence 67788888764
No 117
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.45 E-value=8.9e-07 Score=93.26 Aligned_cols=125 Identities=12% Similarity=0.132 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHhh--ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHH
Q 003769 193 SDDVMSVLNALIN--KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSC 270 (796)
Q Consensus 193 ~~ei~~vi~~L~r--~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~ 270 (796)
+..+...++-+.. ..++++|+||||+|||+++.+++..+.+. +.+++.+++..... ...++++
T Consensus 29 n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~-------~~~v~y~~~~~~~~--------~~~~~~~ 93 (235)
T PRK08084 29 NDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR-------GRAVGYVPLDKRAW--------FVPEVLE 93 (235)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEEHHHHhh--------hhHHHHH
Confidence 3444455554543 55788999999999999999999987642 45666666543222 2234444
Q ss_pred HHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHH-HHHHHHHhhhcCCCCcEEEEEecChHHHHHhhh
Q 003769 271 HVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYV-VMEIKRLVFEIGESERVWIMGIASFQTYTRCKA 349 (796)
Q Consensus 271 ~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~-~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~ 349 (796)
.+++. .+|||||+|.+.+. .+ ..+.. .. +..+. ++|..++|++++ ..+...-.
T Consensus 94 ~~~~~----dlliiDdi~~~~~~-------~~---------~~~~lf~l-~n~~~----e~g~~~li~ts~-~~p~~l~~ 147 (235)
T PRK08084 94 GMEQL----SLVCIDNIECIAGD-------EL---------WEMAIFDL-YNRIL----ESGRTRLLITGD-RPPRQLNL 147 (235)
T ss_pred HhhhC----CEEEEeChhhhcCC-------HH---------HHHHHHHH-HHHHH----HcCCCeEEEeCC-CChHHcCc
Confidence 44432 48999999988653 11 01111 11 22343 367788888887 44444444
Q ss_pred cCccccccc
Q 003769 350 GHPSLENMW 358 (796)
Q Consensus 350 ~dpaLerrf 358 (796)
..|.|.+|+
T Consensus 148 ~~~~L~SRl 156 (235)
T PRK08084 148 GLPDLASRL 156 (235)
T ss_pred ccHHHHHHH
Confidence 679999986
No 118
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.44 E-value=4.4e-07 Score=103.00 Aligned_cols=158 Identities=13% Similarity=0.145 Sum_probs=87.7
Q ss_pred ChHHHHHHHHHHhhccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeec----ccccccchH---HHH--
Q 003769 192 DSDDVMSVLNALINKKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPL----FSFRNQSKG---EVE-- 262 (796)
Q Consensus 192 r~~ei~~vi~~L~r~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~----~~l~a~~rg---e~E-- 262 (796)
.++++..++..|. .+.|++|.|+||||||++|+.||..+.....+. ....+.++. ..++..++- .++
T Consensus 180 ~e~~le~l~~~L~-~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~---~v~~VtFHpsySYeDFI~G~rP~~vgy~~~ 255 (459)
T PRK11331 180 PETTIETILKRLT-IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQ---RVNMVQFHQSYSYEDFIQGYRPNGVGFRRK 255 (459)
T ss_pred CHHHHHHHHHHHh-cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccc---eeeEEeecccccHHHHhcccCCCCCCeEec
Confidence 6778888877776 688999999999999999999999875332221 122333321 122221110 011
Q ss_pred -HHHHHHHHHHHhccCCCEEEEEcchhhhhhhhcccCCCC----ccccCCCcchhHHHHHHHHHHHh-hh-----cCCCC
Q 003769 263 -QKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGD----EQKRNNNNYCVEEYVVMEIKRLV-FE-----IGESE 331 (796)
Q Consensus 263 -~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~----~g~~~~~~~~~~d~~~~eLk~L~-~~-----~~~~G 331 (796)
.-+.+++..++.....+.||||||+...--... +|.- +. +.++. ... + +|. .. +.--.
T Consensus 256 ~G~f~~~~~~A~~~p~~~~vliIDEINRani~ki--FGel~~lLE~-~~rg~--~~~-----v-~l~y~e~d~e~f~iP~ 324 (459)
T PRK11331 256 DGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKV--FGEVMMLMEH-DKRGE--NWS-----V-PLTYSENDEERFYVPE 324 (459)
T ss_pred CchHHHHHHHHHhcccCCcEEEEehhhccCHHHh--hhhhhhhccc-ccccc--ccc-----e-eeeccccccccccCCC
Confidence 123444555543213579999999975542210 0110 00 00000 000 0 111 00 00134
Q ss_pred cEEEEEecChHHHHHhhhcCccccccccceeccc
Q 003769 332 RVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTI 365 (796)
Q Consensus 332 ~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~v 365 (796)
.+.+|||++... +.....|+||.|||.++.+..
T Consensus 325 Nl~IIgTMNt~D-rs~~~lD~AlrRRF~fi~i~p 357 (459)
T PRK11331 325 NVYIIGLMNTAD-RSLAVVDYALRRRFSFIDIEP 357 (459)
T ss_pred CeEEEEecCccc-cchhhccHHHHhhhheEEecC
Confidence 699999987655 233468999999998877664
No 119
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=1.3e-06 Score=103.68 Aligned_cols=132 Identities=17% Similarity=0.226 Sum_probs=82.5
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCC---ceEE--ec-CCCC------cc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSN---NFTN--LS-SSQS------RQ 648 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~---~~i~--~d-ms~~------~~ 648 (796)
|+||+.++..+.+++.. ++-.-.+||.||.| +|||++|+.||+.++..... .+.+ .+ +... ..
T Consensus 18 ivGQe~i~~~L~~~i~~---~ri~ha~Lf~Gp~G--vGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~ 92 (620)
T PRK14954 18 ITAQEHITHTIQNSLRM---DRVGHGYIFSGLRG--VGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDA 92 (620)
T ss_pred hcCcHHHHHHHHHHHHc---CCCCeeEEEECCCC--CCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhc
Confidence 78999999988776653 33334578999999 99999999999999873200 0000 00 0000 00
Q ss_pred cccc-ccccCCCCCCCCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCc
Q 003769 649 DDCR-TKKRSRDVELGCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKD 723 (796)
Q Consensus 649 ~~~~-~~k~~~~~~~~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n 723 (796)
+.|. +...-+ ....+-+.+..|.+.++..| |+||++||+++. .. .-+|.|+..+++ .=.+
T Consensus 93 g~~~n~~~~d~-~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~L--t~-~a~naLLK~LEe-----------Pp~~ 157 (620)
T PRK14954 93 GTSLNISEFDA-ASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHML--ST-AAFNAFLKTLEE-----------PPPH 157 (620)
T ss_pred cCCCCeEEecc-cccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhc--CH-HHHHHHHHHHhC-----------CCCC
Confidence 0000 000000 00011123345667776555 689999999999 88 899999999987 2356
Q ss_pred EEEEeeCCC
Q 003769 724 SIIIFSCDS 732 (796)
Q Consensus 724 ~IiilTsn~ 732 (796)
++|||+++.
T Consensus 158 tv~IL~t~~ 166 (620)
T PRK14954 158 AIFIFATTE 166 (620)
T ss_pred eEEEEEeCC
Confidence 888887753
No 120
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=1.5e-06 Score=103.87 Aligned_cols=132 Identities=16% Similarity=0.179 Sum_probs=86.5
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCc--cccccccccCC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSR--QDDCRTKKRSR 658 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~--~~~~~~~k~~~ 658 (796)
|+||+.++..+..+|.. ++..-.+||.||.| +|||.+|+.||+.+++.. .....--+.... .+.|...-...
T Consensus 20 IiGQe~~v~~L~~aI~~---~rl~HAYLF~GP~G--tGKTt~AriLAk~LnC~~-~~~~~~pC~~C~~~~~~~~Dvieid 93 (725)
T PRK07133 20 IVGQDHIVQTLKNIIKS---NKISHAYLFSGPRG--TGKTSVAKIFANALNCSH-KTDLLEPCQECIENVNNSLDIIEMD 93 (725)
T ss_pred hcCcHHHHHHHHHHHHc---CCCCeEEEEECCCC--CcHHHHHHHHHHHhcccc-cCCCCCchhHHHHhhcCCCcEEEEe
Confidence 89999999888887753 34455689999999 999999999999999754 211000000000 00010000000
Q ss_pred CCCCCCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 659 DVELGCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 659 ~~~~~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
..+..|.+.+..|.+.+...| |.|++|||++.. .. ..++.|+..||+- =.+++|||+|+.
T Consensus 94 aasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~L--T~-~A~NALLKtLEEP-----------P~~tifILaTte 157 (725)
T PRK07133 94 AASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHML--SK-SAFNALLKTLEEP-----------PKHVIFILATTE 157 (725)
T ss_pred ccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhC--CH-HHHHHHHHHhhcC-----------CCceEEEEEcCC
Confidence 000112233457888888766 589999999999 99 9999999999863 256788887753
No 121
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.41 E-value=6.1e-07 Score=89.23 Aligned_cols=128 Identities=20% Similarity=0.230 Sum_probs=78.0
Q ss_pred CcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceE---------EecCCCCccccccc
Q 003769 583 WQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFT---------NLSSSQSRQDDCRT 653 (796)
Q Consensus 583 gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i---------~~dms~~~~~~~~~ 653 (796)
||++++..+.+.+.. ++-.-.+||.||+| .||+++|+++|+.+++.. ..-. .++...+ .+-+.+
T Consensus 1 gq~~~~~~L~~~~~~---~~l~ha~L~~G~~g--~gk~~~a~~~a~~ll~~~-~~~~~c~~c~~c~~~~~~~~-~d~~~~ 73 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS---GRLPHALLFHGPSG--SGKKTLALAFARALLCSN-PNEDPCGECRSCRRIEEGNH-PDFIII 73 (162)
T ss_dssp S-HHHHHHHHHHHHC---TC--SEEEEECSTT--SSHHHHHHHHHHHHC-TT--CTT--SSSHHHHHHHTT-C-TTEEEE
T ss_pred CcHHHHHHHHHHHHc---CCcceeEEEECCCC--CCHHHHHHHHHHHHcCCC-CCCCCCCCCHHHHHHHhccC-cceEEE
Confidence 898888888877753 33334677999999 999999999999999987 3211 0111111 111100
Q ss_pred cccCCCCCCCCCCchhhHHHHHH----hCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEee
Q 003769 654 KKRSRDVELGCCSYIERLGLALN----ENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFS 729 (796)
Q Consensus 654 ~k~~~~~~~~~~~~~~~L~eavr----~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilT 729 (796)
+..+.....+-+.+..+.+.+. .++|+|++||++|+. .. +.+|.||..||+- =.|++|||+
T Consensus 74 -~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l--~~-~a~NaLLK~LEep-----------p~~~~fiL~ 138 (162)
T PF13177_consen 74 -KPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL--TE-EAQNALLKTLEEP-----------PENTYFILI 138 (162)
T ss_dssp -ETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS---H-HHHHHHHHHHHST-----------TTTEEEEEE
T ss_pred -ecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh--hH-HHHHHHHHHhcCC-----------CCCEEEEEE
Confidence 0000000001112223333333 356889999999999 99 9999999999863 378999998
Q ss_pred CCC
Q 003769 730 CDS 732 (796)
Q Consensus 730 sn~ 732 (796)
|+.
T Consensus 139 t~~ 141 (162)
T PF13177_consen 139 TNN 141 (162)
T ss_dssp ES-
T ss_pred ECC
Confidence 863
No 122
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=2e-06 Score=100.14 Aligned_cols=131 Identities=13% Similarity=0.132 Sum_probs=81.3
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCce----EEecCCCCcccccc-ccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNF----TNLSSSQSRQDDCR-TKK 655 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~----i~~dms~~~~~~~~-~~k 655 (796)
|+||+.++..+...|. +++-.-.+||.||.| +|||.+|+.||+.+++...... ++-.+.......|. +..
T Consensus 16 iiGqe~v~~~L~~~I~---~grl~hayLf~Gp~G--~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~e 90 (535)
T PRK08451 16 LIGQESVSKTLSLALD---NNRLAHAYLFSGLRG--SGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIE 90 (535)
T ss_pred ccCcHHHHHHHHHHHH---cCCCCeeEEEECCCC--CcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEE
Confidence 8999999988888774 344455779999999 9999999999999986430110 00000000000010 000
Q ss_pred cCCCCCCCCCCchhhHHHHHHhC----CCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCC
Q 003769 656 RSRDVELGCCSYIERLGLALNEN----PHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 656 ~~~~~~~~~~~~~~~L~eavr~~----P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn 731 (796)
.-++. ..|-..+..+.+.++.. +|.||+|||++.. +. +.+|.|+..+|+ .=.+++|||+|+
T Consensus 91 ldaas-~~gId~IRelie~~~~~P~~~~~KVvIIDEad~L--t~-~A~NALLK~LEE-----------pp~~t~FIL~tt 155 (535)
T PRK08451 91 MDAAS-NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHML--TK-EAFNALLKTLEE-----------PPSYVKFILATT 155 (535)
T ss_pred ecccc-ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccC--CH-HHHHHHHHHHhh-----------cCCceEEEEEEC
Confidence 00000 01111222333333334 4789999999999 99 999999999987 235688898876
No 123
>PHA02244 ATPase-like protein
Probab=98.40 E-value=3.5e-06 Score=93.60 Aligned_cols=131 Identities=16% Similarity=0.213 Sum_probs=89.4
Q ss_pred CCCcchHHHHHHHHHHHhhc-cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCC
Q 003769 581 VPWQKEIMPEIARTILECRS-KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs-~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~ 659 (796)
.+|+...+......+.+.-. ..| +|+.||+| +|||.+|++||..+ |- .|++++.. ++.. .+.|.
T Consensus 98 ~ig~sp~~~~~~~ri~r~l~~~~P---VLL~GppG--tGKTtLA~aLA~~l-g~---pfv~In~l---~d~~---~L~G~ 162 (383)
T PHA02244 98 KIASNPTFHYETADIAKIVNANIP---VFLKGGAG--SGKNHIAEQIAEAL-DL---DFYFMNAI---MDEF---ELKGF 162 (383)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCC---EEEECCCC--CCHHHHHHHHHHHh-CC---CEEEEecC---hHHH---hhccc
Confidence 35555555444444433222 333 67899999 99999999999986 43 48887632 1111 11121
Q ss_pred CCCCCCCch-hhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 660 VELGCCSYI-ERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 660 ~~~~~~~~~-~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
....| .+. +.|+.|+++ ..|++||||+.| +| +++..|..+++++.+.-..|+..--.|.-||+|+|.
T Consensus 163 i~~~g-~~~dgpLl~A~~~--GgvLiLDEId~a--~p-~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~ 230 (383)
T PHA02244 163 IDANG-KFHETPFYEAFKK--GGLFFIDEIDAS--IP-EALIIINSAIANKFFDFADERVTAHEDFRVISAGNT 230 (383)
T ss_pred ccccc-cccchHHHHHhhc--CCEEEEeCcCcC--CH-HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCC
Confidence 11111 222 588898754 579999999999 99 999999999999988876665445578889999996
No 124
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=1.9e-06 Score=100.05 Aligned_cols=131 Identities=20% Similarity=0.215 Sum_probs=82.3
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCc-----eEEecC----CCCccccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNN-----FTNLSS----SQSRQDDC 651 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~-----~i~~dm----s~~~~~~~ 651 (796)
++||+.++..+..++.. ++....+||.||.| +|||.+|+.+|+.+.... .. +..... -......|
T Consensus 23 liGq~~vv~~L~~ai~~---~ri~~a~Lf~Gp~G--~GKTT~ArilAk~Lnc~~-~~~~~~~~~~C~~C~~C~~i~~~~h 96 (507)
T PRK06645 23 LQGQEVLVKVLSYTILN---DRLAGGYLLTGIRG--VGKTTSARIIAKAVNCSA-LITENTTIKTCEQCTNCISFNNHNH 96 (507)
T ss_pred hcCcHHHHHHHHHHHHc---CCCCceEEEECCCC--CCHHHHHHHHHHHhcCcc-ccccCcCcCCCCCChHHHHHhcCCC
Confidence 79999999887777653 34445778999999 999999999999997642 10 000000 00000001
Q ss_pred cccccCCCCCCCCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEE
Q 003769 652 RTKKRSRDVELGCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIII 727 (796)
Q Consensus 652 ~~~k~~~~~~~~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~Iii 727 (796)
.-.-........|-+.+..+.+.+...| |.||+|||++.. .. ..++.|+..+++ .=.+++||
T Consensus 97 ~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~L--s~-~a~naLLk~LEe-----------pp~~~vfI 162 (507)
T PRK06645 97 PDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHML--SK-GAFNALLKTLEE-----------PPPHIIFI 162 (507)
T ss_pred CcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhc--CH-HHHHHHHHHHhh-----------cCCCEEEE
Confidence 0000000000011222345666666555 689999999999 98 999999999985 23578888
Q ss_pred eeCC
Q 003769 728 FSCD 731 (796)
Q Consensus 728 lTsn 731 (796)
++++
T Consensus 163 ~aTt 166 (507)
T PRK06645 163 FATT 166 (507)
T ss_pred EEeC
Confidence 8765
No 125
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=1.9e-06 Score=99.89 Aligned_cols=132 Identities=16% Similarity=0.146 Sum_probs=83.9
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCce-----EEecCCCCccccccccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNF-----TNLSSSQSRQDDCRTKK 655 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~-----i~~dms~~~~~~~~~~k 655 (796)
|+||+.++..+..+|.. ++....+||.||.| +|||++|+.+|+.+++.. ..- .+.++.....+.+.-.-
T Consensus 18 iiGq~~i~~~L~~~i~~---~~i~hayLf~Gp~G--~GKTtlAr~lAk~L~c~~-~~~~~pc~~c~nc~~i~~g~~~d~~ 91 (486)
T PRK14953 18 VIGQEIVVRILKNAVKL---QRVSHAYIFAGPRG--TGKTTIARILAKVLNCLN-PQEGEPCGKCENCVEIDKGSFPDLI 91 (486)
T ss_pred ccChHHHHHHHHHHHHc---CCCCeEEEEECCCC--CCHHHHHHHHHHHhcCcC-CCCCCCCCccHHHHHHhcCCCCcEE
Confidence 78999999888777754 34445788999999 999999999999998532 100 00000000000000000
Q ss_pred cCCCCCCCCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCC
Q 003769 656 RSRDVELGCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 656 ~~~~~~~~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn 731 (796)
.+-.....|.+.+..+.+.++..| |.||++||+++. .. ..+|.|+..+++- -.+++|||+++
T Consensus 92 eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~L--t~-~a~naLLk~LEep-----------p~~~v~Il~tt 157 (486)
T PRK14953 92 EIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHML--TK-EAFNALLKTLEEP-----------PPRTIFILCTT 157 (486)
T ss_pred EEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhc--CH-HHHHHHHHHHhcC-----------CCCeEEEEEEC
Confidence 000000112233457778887776 569999999999 88 8999999999763 24667777665
Q ss_pred C
Q 003769 732 S 732 (796)
Q Consensus 732 ~ 732 (796)
-
T Consensus 158 ~ 158 (486)
T PRK14953 158 E 158 (486)
T ss_pred C
Confidence 3
No 126
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.39 E-value=4.5e-07 Score=84.97 Aligned_cols=99 Identities=19% Similarity=0.267 Sum_probs=68.7
Q ss_pred EEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCC-CEEEEE
Q 003769 607 LLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENP-HRVFFM 685 (796)
Q Consensus 607 ~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P-~~Vvl~ 685 (796)
+|+.||.| +|||.+|+.||+.+ | ..++.+|+++.. .. . .+ ........+...++++. .+||+|
T Consensus 1 ill~G~~G--~GKT~l~~~la~~l-~---~~~~~i~~~~~~-~~-~-------~~-~~~~~i~~~~~~~~~~~~~~vl~i 64 (132)
T PF00004_consen 1 ILLHGPPG--TGKTTLARALAQYL-G---FPFIEIDGSELI-SS-Y-------AG-DSEQKIRDFFKKAKKSAKPCVLFI 64 (132)
T ss_dssp EEEESSTT--SSHHHHHHHHHHHT-T---SEEEEEETTHHH-TS-S-------TT-HHHHHHHHHHHHHHHTSTSEEEEE
T ss_pred CEEECcCC--CCeeHHHHHHHhhc-c---cccccccccccc-cc-c-------cc-ccccccccccccccccccceeeee
Confidence 58999999 99999999999998 4 458999987431 00 0 00 00112234445555554 599999
Q ss_pred cccccCCCChHHH-----------HHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 686 EDLDDHKVDSCYC-----------QKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 686 deieka~~~~~~v-----------~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
||+|+. -+ .. .+.|+..+++-.-. -++.+||+|||.
T Consensus 65 De~d~l--~~-~~~~~~~~~~~~~~~~L~~~l~~~~~~--------~~~~~vI~ttn~ 111 (132)
T PF00004_consen 65 DEIDKL--FP-KSQPSSSSFEQRLLNQLLSLLDNPSSK--------NSRVIVIATTNS 111 (132)
T ss_dssp ETGGGT--SH-HCSTSSSHHHHHHHHHHHHHHHTTTTT--------SSSEEEEEEESS
T ss_pred ccchhc--cc-ccccccccccccccceeeecccccccc--------cccceeEEeeCC
Confidence 999988 66 43 77888888654322 356899999984
No 127
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.38 E-value=9.6e-07 Score=84.26 Aligned_cols=105 Identities=17% Similarity=0.291 Sum_probs=63.1
Q ss_pred EEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCC-CCch----hhHHHHHHhCCCE
Q 003769 607 LLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGC-CSYI----ERLGLALNENPHR 681 (796)
Q Consensus 607 ~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~-~~~~----~~L~eavr~~P~~ 681 (796)
+|+.|+.| +|||.+|++||+.+ |-. |.||.+..+-+ .+...|.+-|.. .+.. |-+. -.
T Consensus 2 vLleg~PG--~GKT~la~~lA~~~-~~~---f~RIq~tpdll----PsDi~G~~v~~~~~~~f~~~~GPif-------~~ 64 (131)
T PF07726_consen 2 VLLEGVPG--VGKTTLAKALARSL-GLS---FKRIQFTPDLL----PSDILGFPVYDQETGEFEFRPGPIF-------TN 64 (131)
T ss_dssp EEEES-----HHHHHHHHHHHHHT-T-----EEEEE--TT------HHHHHEEEEEETTTTEEEEEE-TT--------SS
T ss_pred EeeECCCc--cHHHHHHHHHHHHc-CCc---eeEEEecCCCC----cccceeeeeeccCCCeeEeecChhh-------hc
Confidence 58999999 99999999999998 433 78887763211 011111110000 0000 1111 24
Q ss_pred EEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcE-EEEeeCCC
Q 003769 682 VFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDS-IIIFSCDS 732 (796)
Q Consensus 682 Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~-IiilTsn~ 732 (796)
|+|+|||-.| -| .+|..|+++|++++++- .|++..+-+- +||-|-|-
T Consensus 65 ill~DEiNra--pp-ktQsAlLeam~Er~Vt~-~g~~~~lp~pf~ViATqNp 112 (131)
T PF07726_consen 65 ILLADEINRA--PP-KTQSALLEAMEERQVTI-DGQTYPLPDPFFVIATQNP 112 (131)
T ss_dssp EEEEETGGGS---H-HHHHHHHHHHHHSEEEE-TTEEEE--SS-EEEEEE-T
T ss_pred eeeecccccC--CH-HHHHHHHHHHHcCeEEe-CCEEEECCCcEEEEEecCc
Confidence 9999999999 99 99999999999999996 6788888884 45557673
No 128
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.38 E-value=2e-06 Score=79.50 Aligned_cols=78 Identities=14% Similarity=0.097 Sum_probs=55.8
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeeccccccc--------------chHHHHHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQ--------------SKGEVEQKLVELSCHV 272 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~--------------~rge~E~rl~~l~~~v 272 (796)
+++++|+||||+|||++++.++..+.... ..++.++....... ....-...+..+++.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-------GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-------CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999998765331 24677776544321 1223455666777777
Q ss_pred HhccCCCEEEEEcchhhhhhh
Q 003769 273 KSYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 273 ~~~~~~~~ILfIDElh~l~~~ 293 (796)
+. ....||||||++.+...
T Consensus 75 ~~--~~~~viiiDei~~~~~~ 93 (148)
T smart00382 75 RK--LKPDVLILDEITSLLDA 93 (148)
T ss_pred Hh--cCCCEEEEECCcccCCH
Confidence 75 34699999999998765
No 129
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.37 E-value=2.3e-06 Score=93.88 Aligned_cols=129 Identities=18% Similarity=0.280 Sum_probs=82.2
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCC-CCceEEecCCCCccccccccccCCC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSH-SNNFTNLSSSQSRQDDCRTKKRSRD 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~-~~~~i~~dms~~~~~~~~~~k~~~~ 659 (796)
++||++++..+.+.+.. ++ ...+||.||+| +|||.+|+++|+.+++.. ...++.++++++......... ..
T Consensus 17 ~~g~~~~~~~L~~~~~~---~~-~~~lll~Gp~G--tGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~ 88 (337)
T PRK12402 17 ILGQDEVVERLSRAVDS---PN-LPHLLVQGPPG--SGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLV--ED 88 (337)
T ss_pred hcCCHHHHHHHHHHHhC---CC-CceEEEECCCC--CCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhh--cC
Confidence 68999988888776642 22 23688999999 999999999999998752 145788888754211000000 00
Q ss_pred CCC---CCC------CchhhHHHHH----Hh----CCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCC
Q 003769 660 VEL---GCC------SYIERLGLAL----NE----NPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLK 722 (796)
Q Consensus 660 ~~~---~~~------~~~~~L~eav----r~----~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~ 722 (796)
+.+ .+. ...+.+-+.+ +. .++.||+|||++.. ++ ..++.|+..+++.. +
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l--~~-~~~~~L~~~le~~~-----------~ 154 (337)
T PRK12402 89 PRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEAL--RE-DAQQALRRIMEQYS-----------R 154 (337)
T ss_pred cchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccC--CH-HHHHHHHHHHHhcc-----------C
Confidence 100 000 0112222222 21 45789999999999 88 89999999988631 3
Q ss_pred cEEEEeeCC
Q 003769 723 DSIIIFSCD 731 (796)
Q Consensus 723 n~IiilTsn 731 (796)
++.||+|++
T Consensus 155 ~~~~Il~~~ 163 (337)
T PRK12402 155 TCRFIIATR 163 (337)
T ss_pred CCeEEEEeC
Confidence 456777765
No 130
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.33 E-value=1.6e-07 Score=90.02 Aligned_cols=113 Identities=19% Similarity=0.168 Sum_probs=63.4
Q ss_pred ceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc------cch---HHHHHHHHHHHHHHHhccCCC
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN------QSK---GEVEQKLVELSCHVKSYMGRG 279 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a------~~r---ge~E~rl~~l~~~v~~~~~~~ 279 (796)
+++|+||||+|||++++.+|..+ +.+++.+.+.+... .|. +.++-+-..+...++ .+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~----------~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~----~~ 66 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL----------GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR----KG 66 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH----------TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH----EE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh----------hcceEEEEeccccccccceeeeeeccccccccccccccccc----ce
Confidence 58999999999999999999987 35666666554322 111 111111111111121 47
Q ss_pred EEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhh--cC---------CCC------cEEEEEecChH
Q 003769 280 IVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFE--IG---------ESE------RVWIMGIASFQ 342 (796)
Q Consensus 280 ~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~--~~---------~~G------~l~~IGatT~~ 342 (796)
.|+||||++..-.. ..+. |..++.. +. ... .+++|+++++.
T Consensus 67 ~il~lDEin~a~~~------------------v~~~----L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~ 124 (139)
T PF07728_consen 67 GILVLDEINRAPPE------------------VLES----LLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPR 124 (139)
T ss_dssp EEEEESSCGG--HH------------------HHHT----THHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSS
T ss_pred eEEEECCcccCCHH------------------HHHH----HHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCC
Confidence 99999999965432 1111 2223310 00 011 38999999988
Q ss_pred HHHHhhhcCccccccc
Q 003769 343 TYTRCKAGHPSLENMW 358 (796)
Q Consensus 343 ey~k~~~~dpaLerrf 358 (796)
.+. ...-++||.+||
T Consensus 125 ~~~-~~~l~~al~~Rf 139 (139)
T PF07728_consen 125 DKG-RKELSPALLDRF 139 (139)
T ss_dssp T---TTTTCHHHHTT-
T ss_pred CCC-cCcCCHHHHhhC
Confidence 733 337889999887
No 131
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.33 E-value=3.6e-06 Score=95.73 Aligned_cols=141 Identities=13% Similarity=0.119 Sum_probs=93.7
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccC-CC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRS-RD 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~-~~ 659 (796)
+++-++.++.+..++.. ..-++|.||+| +|||.+|+.||..+.+. ..+.+++|-+++ ..++....+ |.
T Consensus 177 ~~i~e~~le~l~~~L~~------~~~iil~GppG--tGKT~lA~~la~~l~~~--~~~~~v~~VtFH-psySYeDFI~G~ 245 (459)
T PRK11331 177 LFIPETTIETILKRLTI------KKNIILQGPPG--VGKTFVARRLAYLLTGE--KAPQRVNMVQFH-QSYSYEDFIQGY 245 (459)
T ss_pred ccCCHHHHHHHHHHHhc------CCCEEEECCCC--CCHHHHHHHHHHHhcCC--cccceeeEEeec-ccccHHHHhccc
Confidence 45556666777666652 24788999999 99999999999999764 456777776553 222222222 21
Q ss_pred -CCCCCCCch-h---hHHHHHHhCC--CEEEEEcccccCCCChHHHHHHHHHHHHcce------Ee----cCCCce-ecC
Q 003769 660 -VELGCCSYI-E---RLGLALNENP--HRVFFMEDLDDHKVDSCYCQKGLKQAIENGC------IA----LADGEI-VPL 721 (796)
Q Consensus 660 -~~~~~~~~~-~---~L~eavr~~P--~~Vvl~deieka~~~~~~v~~~l~q~~d~G~------l~----d~~G~~-v~~ 721 (796)
|++.|.... | ++++..+++| ..|++||||+.| +++.++.-+++.||.+. +. ...++. .--
T Consensus 246 rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa--ni~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP 323 (459)
T PRK11331 246 RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA--NLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVP 323 (459)
T ss_pred CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhcc--CHHHhhhhhhhhccccccccccceeeeccccccccccCC
Confidence 333332211 2 4566777777 479999999999 98678999999999642 11 111222 224
Q ss_pred CcEEEEeeCCCCC
Q 003769 722 KDSIIIFSCDSLD 734 (796)
Q Consensus 722 ~n~IiilTsn~~~ 734 (796)
.|..||-|.|.-|
T Consensus 324 ~Nl~IIgTMNt~D 336 (459)
T PRK11331 324 ENVYIIGLMNTAD 336 (459)
T ss_pred CCeEEEEecCccc
Confidence 8999999999765
No 132
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=3.8e-06 Score=100.01 Aligned_cols=130 Identities=15% Similarity=0.149 Sum_probs=83.1
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCc---eEEecCC---CCcccccc-c
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNN---FTNLSSS---QSRQDDCR-T 653 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~---~i~~dms---~~~~~~~~-~ 653 (796)
|+||+.++..+...|.. ++-.-.+||.||.| +|||++|+.+|+.++... .. .-+-.+. ......|. +
T Consensus 19 viGq~~~~~~L~~~i~~---~~l~hayLf~Gp~G--~GKtt~A~~lAk~l~c~~-~~~~~~~Cg~C~sC~~~~~~~~~n~ 92 (614)
T PRK14971 19 VVGQEALTTTLKNAIAT---NKLAHAYLFCGPRG--VGKTTCARIFAKTINCQN-LTADGEACNECESCVAFNEQRSYNI 92 (614)
T ss_pred hcCcHHHHHHHHHHHHc---CCCCeeEEEECCCC--CCHHHHHHHHHHHhCCCC-CCCCCCCCCcchHHHHHhcCCCCce
Confidence 89999999988887753 44556789999999 999999999999998532 10 0000000 00000000 0
Q ss_pred cccCCCCCCCCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEee
Q 003769 654 KKRSRDVELGCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFS 729 (796)
Q Consensus 654 ~k~~~~~~~~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilT 729 (796)
...-+. +..+...+..+.+.++..| |+||+|||++.. .. .-+|.|+..||+- =.+++|||+
T Consensus 93 ~~ld~~-~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~L--s~-~a~naLLK~LEep-----------p~~tifIL~ 157 (614)
T PRK14971 93 HELDAA-SNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHML--SQ-AAFNAFLKTLEEP-----------PSYAIFILA 157 (614)
T ss_pred EEeccc-ccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccC--CH-HHHHHHHHHHhCC-----------CCCeEEEEE
Confidence 000000 0001112334555556666 899999999999 98 9999999999862 257889997
Q ss_pred CC
Q 003769 730 CD 731 (796)
Q Consensus 730 sn 731 (796)
|+
T Consensus 158 tt 159 (614)
T PRK14971 158 TT 159 (614)
T ss_pred eC
Confidence 75
No 133
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.32 E-value=2.5e-06 Score=94.13 Aligned_cols=82 Identities=9% Similarity=0.106 Sum_probs=52.4
Q ss_pred ChHHHHHHHHHHhh------ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHH
Q 003769 192 DSDDVMSVLNALIN------KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKL 265 (796)
Q Consensus 192 r~~ei~~vi~~L~r------~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl 265 (796)
+++++..+...+.. ..++++|+||||+|||++++.+|..+. ..++..+...+. ..++ +
T Consensus 30 ~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~----------~~~~~~~~~~~~--~~~~----l 93 (328)
T PRK00080 30 QEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG----------VNIRITSGPALE--KPGD----L 93 (328)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhC----------CCeEEEeccccc--ChHH----H
Confidence 66666666555542 346889999999999999999999762 334433332221 1222 3
Q ss_pred HHHHHHHHhccCCCEEEEEcchhhhhhh
Q 003769 266 VELSCHVKSYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 266 ~~l~~~v~~~~~~~~ILfIDElh~l~~~ 293 (796)
..++..+ ..+.||||||+|.+...
T Consensus 94 ~~~l~~l----~~~~vl~IDEi~~l~~~ 117 (328)
T PRK00080 94 AAILTNL----EEGDVLFIDEIHRLSPV 117 (328)
T ss_pred HHHHHhc----ccCCEEEEecHhhcchH
Confidence 3333332 34689999999988643
No 134
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=3.4e-06 Score=100.18 Aligned_cols=131 Identities=15% Similarity=0.201 Sum_probs=82.8
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEec-CCCCc------ccccc-
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLS-SSQSR------QDDCR- 652 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~d-ms~~~------~~~~~- 652 (796)
|+||+.++..+-..+... +....+||.||.| +|||.+|+.||+.+++.. .. -..+ +.... .+.|.
T Consensus 18 iiGq~~~~~~L~~~i~~~---~i~~a~Lf~Gp~G--~GKTtlA~~lA~~l~c~~-~~-~~~~~c~~c~~c~~i~~~~~~d 90 (585)
T PRK14950 18 LVGQEHVVQTLRNAIAEG---RVAHAYLFTGPRG--VGKTSTARILAKAVNCTT-ND-PKGRPCGTCEMCRAIAEGSAVD 90 (585)
T ss_pred hcCCHHHHHHHHHHHHhC---CCceEEEEECCCC--CCHHHHHHHHHHHhcCCC-CC-CCCCCCccCHHHHHHhcCCCCe
Confidence 899999999887777543 3334678999999 999999999999998543 11 0000 00000 00000
Q ss_pred ccccCCCCCCCCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEe
Q 003769 653 TKKRSRDVELGCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIF 728 (796)
Q Consensus 653 ~~k~~~~~~~~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~Iiil 728 (796)
+... ......+.+.+..+.+.+...| +.||+|||+++. +. ..+|.|+..+++- -.+++||+
T Consensus 91 ~~~i-~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L--~~-~a~naLLk~LEep-----------p~~tv~Il 155 (585)
T PRK14950 91 VIEM-DAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHML--ST-AAFNALLKTLEEP-----------PPHAIFIL 155 (585)
T ss_pred EEEE-eccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhC--CH-HHHHHHHHHHhcC-----------CCCeEEEE
Confidence 0000 0000111122235556666555 689999999999 98 8999999999873 14788888
Q ss_pred eCCCC
Q 003769 729 SCDSL 733 (796)
Q Consensus 729 Tsn~~ 733 (796)
+++..
T Consensus 156 ~t~~~ 160 (585)
T PRK14950 156 ATTEV 160 (585)
T ss_pred EeCCh
Confidence 77643
No 135
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.31 E-value=4.8e-06 Score=90.45 Aligned_cols=104 Identities=18% Similarity=0.189 Sum_probs=74.3
Q ss_pred CCCcchHHHHHHHHHHHhhc-cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCC
Q 003769 581 VPWQKEIMPEIARTILECRS-KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs-~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~ 659 (796)
++||++++..+...+...+- +.+...++|.||+| +|||.+|+++|..+- . .+..++.+..
T Consensus 6 ~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G--~GKT~la~~ia~~~~-~---~~~~~~~~~~------------- 66 (305)
T TIGR00635 6 FIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPG--LGKTTLAHIIANEMG-V---NLKITSGPAL------------- 66 (305)
T ss_pred HcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCC--CCHHHHHHHHHHHhC-C---CEEEeccchh-------------
Confidence 79999999998888865544 34456799999999 999999999999873 2 2333332210
Q ss_pred CCCCCCCchhhHHHHHHh-CCCEEEEEcccccCCCChHHHHHHHHHHHHcceEe
Q 003769 660 VELGCCSYIERLGLALNE-NPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIA 712 (796)
Q Consensus 660 ~~~~~~~~~~~L~eavr~-~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~ 712 (796)
... +.|.+.++. ....|++||||++. .+ ..+..|+.++++++..
T Consensus 67 ---~~~---~~l~~~l~~~~~~~vl~iDEi~~l--~~-~~~e~l~~~~~~~~~~ 111 (305)
T TIGR00635 67 ---EKP---GDLAAILTNLEEGDVLFIDEIHRL--SP-AVEELLYPAMEDFRLD 111 (305)
T ss_pred ---cCc---hhHHHHHHhcccCCEEEEehHhhh--CH-HHHHHhhHHHhhhhee
Confidence 001 123333322 34579999999999 99 9999999999988743
No 136
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.31 E-value=5.4e-06 Score=90.48 Aligned_cols=134 Identities=11% Similarity=0.117 Sum_probs=79.1
Q ss_pred ChHHHHHHHHHHhh-ccCceEE-EcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHH
Q 003769 192 DSDDVMSVLNALIN-KKRNTVI-VGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELS 269 (796)
Q Consensus 192 r~~ei~~vi~~L~r-~k~n~vL-vGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~ 269 (796)
.++.+..+...+.+ +..|++| +||||+|||++++.++..+ +..++.++.+. .. .......+.+..
T Consensus 26 ~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~----------~~~~~~i~~~~--~~-~~~i~~~l~~~~ 92 (316)
T PHA02544 26 PAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV----------GAEVLFVNGSD--CR-IDFVRNRLTRFA 92 (316)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh----------CccceEeccCc--cc-HHHHHHHHHHHH
Confidence 34444444444555 5567777 7999999999999999875 23466666554 11 233333344433
Q ss_pred HHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhh
Q 003769 270 CHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKA 349 (796)
Q Consensus 270 ~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~ 349 (796)
...... +.+-||||||+|.+... .++..|+.++... .+..++|.+++.. . .
T Consensus 93 ~~~~~~-~~~~vliiDe~d~l~~~---------------------~~~~~L~~~le~~--~~~~~~Ilt~n~~--~---~ 143 (316)
T PHA02544 93 STVSLT-GGGKVIIIDEFDRLGLA---------------------DAQRHLRSFMEAY--SKNCSFIITANNK--N---G 143 (316)
T ss_pred Hhhccc-CCCeEEEEECcccccCH---------------------HHHHHHHHHHHhc--CCCceEEEEcCCh--h---h
Confidence 333221 35679999999877321 1112266655322 4567888877632 2 3
Q ss_pred cCccccccccceecccCC
Q 003769 350 GHPSLENMWKLHPFTIPV 367 (796)
Q Consensus 350 ~dpaLerrf~lq~V~vp~ 367 (796)
..|+|.+|+....++.|+
T Consensus 144 l~~~l~sR~~~i~~~~p~ 161 (316)
T PHA02544 144 IIEPLRSRCRVIDFGVPT 161 (316)
T ss_pred chHHHHhhceEEEeCCCC
Confidence 568899998544444444
No 137
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.30 E-value=3.4e-06 Score=95.39 Aligned_cols=129 Identities=18% Similarity=0.186 Sum_probs=88.2
Q ss_pred CCCcchHHHHHHHHHHHhhc---------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccc
Q 003769 581 VPWQKEIMPEIARTILECRS---------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDC 651 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs---------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~ 651 (796)
|.|-++.+..|...|..--. -.|..-+||.||+| +|||.+||++|..+ + ..|++++.++..
T Consensus 133 i~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppG--tGKT~lAkaia~~~-~---~~~i~v~~~~l~---- 202 (389)
T PRK03992 133 IGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPG--TGKTLLAKAVAHET-N---ATFIRVVGSELV---- 202 (389)
T ss_pred hCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCC--CChHHHHHHHHHHh-C---CCEEEeehHHHh----
Confidence 67888888888888754211 23445678999999 99999999999987 3 348888876441
Q ss_pred cccccCCCCCCCCC--CchhhHHHHHHhCCCEEEEEcccccCC---------CChHHHHHHHHHHHHcceEecCCCceec
Q 003769 652 RTKKRSRDVELGCC--SYIERLGLALNENPHRVFFMEDLDDHK---------VDSCYCQKGLKQAIENGCIALADGEIVP 720 (796)
Q Consensus 652 ~~~k~~~~~~~~~~--~~~~~L~eavr~~P~~Vvl~deieka~---------~~~~~v~~~l~q~~d~G~l~d~~G~~v~ 720 (796)
.+ |.|. ..+..+.+..+.+..+||||||||... -++ .++..+.+.+..-.-. .+
T Consensus 203 --~~------~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~-~~~~~l~~lL~~ld~~------~~ 267 (389)
T PRK03992 203 --QK------FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDR-EVQRTLMQLLAEMDGF------DP 267 (389)
T ss_pred --Hh------hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccH-HHHHHHHHHHHhcccc------CC
Confidence 01 2222 233466777778888999999999731 145 7777888877541111 12
Q ss_pred CCcEEEEeeCCCCC
Q 003769 721 LKDSIIIFSCDSLD 734 (796)
Q Consensus 721 ~~n~IiilTsn~~~ 734 (796)
..+.+||+|||..+
T Consensus 268 ~~~v~VI~aTn~~~ 281 (389)
T PRK03992 268 RGNVKIIAATNRID 281 (389)
T ss_pred CCCEEEEEecCChh
Confidence 24778999998653
No 138
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.30 E-value=6.1e-06 Score=91.02 Aligned_cols=125 Identities=16% Similarity=0.189 Sum_probs=85.1
Q ss_pred CCCcchHHHHHHHHHHHhhc-cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCC
Q 003769 581 VPWQKEIMPEIARTILECRS-KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs-~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~ 659 (796)
++||++++..+...+..++. +.+...+||.||+| +|||.+|+.+|+.+ |.. +..++.....
T Consensus 27 ~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG--~GKT~la~~ia~~l-~~~---~~~~~~~~~~------------ 88 (328)
T PRK00080 27 FIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPG--LGKTTLANIIANEM-GVN---IRITSGPALE------------ 88 (328)
T ss_pred hcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCC--ccHHHHHHHHHHHh-CCC---eEEEeccccc------------
Confidence 79999999999988877665 55667889999999 99999999999998 322 3333322110
Q ss_pred CCCCCCCchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEec--CCC---cee--cCCcEEEEeeCCC
Q 003769 660 VELGCCSYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIAL--ADG---EIV--PLKDSIIIFSCDS 732 (796)
Q Consensus 660 ~~~~~~~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d--~~G---~~v--~~~n~IiilTsn~ 732 (796)
..+....+...+ .+..||+||||+.. .+ ..++.|+.++++.++.- ..| +.+ ...+.++|.++|-
T Consensus 89 ----~~~~l~~~l~~l--~~~~vl~IDEi~~l--~~-~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~ 159 (328)
T PRK00080 89 ----KPGDLAAILTNL--EEGDVLFIDEIHRL--SP-VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTR 159 (328)
T ss_pred ----ChHHHHHHHHhc--ccCCEEEEecHhhc--ch-HHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCC
Confidence 011111222222 46789999999999 88 89999999999887531 122 222 3345566776653
No 139
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=4.1e-06 Score=91.78 Aligned_cols=123 Identities=20% Similarity=0.310 Sum_probs=82.4
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDV 660 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~ 660 (796)
|+||+.++..+.+.+.. ++-.-.+||.||.| +|||.+|+++|+.+++.. ..-.+.|+-.....+ + .
T Consensus 6 i~g~~~~~~~l~~~~~~---~~~~ha~Lf~G~~G--~Gk~~la~~~a~~l~c~~-~~~~h~D~~~~~~~~-------~-~ 71 (313)
T PRK05564 6 IIGHENIKNRIKNSIIK---NRFSHAHIIVGEDG--IGKSLLAKEIALKILGKS-QQREYVDIIEFKPIN-------K-K 71 (313)
T ss_pred ccCcHHHHHHHHHHHHc---CCCCceEEeECCCC--CCHHHHHHHHHHHHcCCC-CCCCCCCeEEecccc-------C-C
Confidence 78999999998888743 33444778999999 999999999999998753 211111221110000 0 0
Q ss_pred CCCCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 661 ELGCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 661 ~~~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
..+.+.+-.+.+.+...| ++||++|++|+. +. ..+|.|+..+|+ .=.+|+|||+|+.
T Consensus 72 -~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m--~~-~a~naLLK~LEe-----------pp~~t~~il~~~~ 132 (313)
T PRK05564 72 -SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM--TE-QAQNAFLKTIEE-----------PPKGVFIILLCEN 132 (313)
T ss_pred -CCCHHHHHHHHHHHhcCcccCCceEEEEechhhc--CH-HHHHHHHHHhcC-----------CCCCeEEEEEeCC
Confidence 001112233444444555 579999999999 99 999999999975 2267889988754
No 140
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.29 E-value=4.3e-06 Score=89.31 Aligned_cols=124 Identities=14% Similarity=0.172 Sum_probs=76.9
Q ss_pred CCCcchHHHHHH---HHHHHhh--c------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCC---CCceEEecCCCC
Q 003769 581 VPWQKEIMPEIA---RTILECR--S------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSH---SNNFTNLSSSQS 646 (796)
Q Consensus 581 v~gQ~~av~~ia---~~i~~~r--s------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~---~~~~i~~dms~~ 646 (796)
++|++++-..|- ..+..+. . ......++|.||+| +|||.+|+.+|+.++... ..+++.++.++.
T Consensus 8 ~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppG--tGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l 85 (261)
T TIGR02881 8 MVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPG--TGKTTVARILGKLFKEMNVLSKGHLIEVERADL 85 (261)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCC--CCHHHHHHHHHHHHHhcCcccCCceEEecHHHh
Confidence 577766655543 4443321 1 22346789999999 999999999999886321 034555544322
Q ss_pred ccccccccccCCCCCCCCCCchhhHHHHHHhCCCEEEEEcccccCC------CChHHHHHHHHHHHHcceEecCCCceec
Q 003769 647 RQDDCRTKKRSRDVELGCCSYIERLGLALNENPHRVFFMEDLDDHK------VDSCYCQKGLKQAIENGCIALADGEIVP 720 (796)
Q Consensus 647 ~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vvl~deieka~------~~~~~v~~~l~q~~d~G~l~d~~G~~v~ 720 (796)
.+ .|.|.. ...+-+.+.+....|||||||+... ... +.++.|++.+++++
T Consensus 86 ----------~~--~~~g~~-~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~-~~i~~Ll~~~e~~~---------- 141 (261)
T TIGR02881 86 ----------VG--EYIGHT-AQKTREVIKKALGGVLFIDEAYSLARGGEKDFGK-EAIDTLVKGMEDNR---------- 141 (261)
T ss_pred ----------hh--hhccch-HHHHHHHHHhccCCEEEEechhhhccCCccchHH-HHHHHHHHHHhccC----------
Confidence 00 122221 2345566666677899999998640 024 67889999998752
Q ss_pred CCcEEEEeeCC
Q 003769 721 LKDSIIIFSCD 731 (796)
Q Consensus 721 ~~n~IiilTsn 731 (796)
.+.+||+++.
T Consensus 142 -~~~~vila~~ 151 (261)
T TIGR02881 142 -NEFVLILAGY 151 (261)
T ss_pred -CCEEEEecCC
Confidence 4457777654
No 141
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=4e-06 Score=99.84 Aligned_cols=132 Identities=15% Similarity=0.160 Sum_probs=82.1
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCC------cccccccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQS------RQDDCRTK 654 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~------~~~~~~~~ 654 (796)
|+||++++..+...+...|- .-.+||.||.| +|||.+|+.+|+.+++.......---+... ..+.|.-.
T Consensus 18 liGq~~i~~~L~~~l~~~rl---~~a~Lf~Gp~G--~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~ 92 (620)
T PRK14948 18 LVGQEAIATTLKNALISNRI---APAYLFTGPRG--TGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDV 92 (620)
T ss_pred ccChHHHHHHHHHHHHcCCC---CceEEEECCCC--CChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccE
Confidence 79999999988887764332 23578999999 999999999999999854110000000000 00001000
Q ss_pred ccCCCCCCCCCCchhhHHHHHHhC----CCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeC
Q 003769 655 KRSRDVELGCCSYIERLGLALNEN----PHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSC 730 (796)
Q Consensus 655 k~~~~~~~~~~~~~~~L~eavr~~----P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTs 730 (796)
.........+-..+..+.+.++.. +|+||+|||+|+. +. ..+|.|+..||+ .-.+++|||++
T Consensus 93 ~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L--t~-~a~naLLK~LEe-----------Pp~~tvfIL~t 158 (620)
T PRK14948 93 IEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHML--ST-AAFNALLKTLEE-----------PPPRVVFVLAT 158 (620)
T ss_pred EEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc--CH-HHHHHHHHHHhc-----------CCcCeEEEEEe
Confidence 000000001112223555555554 5789999999999 99 999999999983 22568899877
Q ss_pred C
Q 003769 731 D 731 (796)
Q Consensus 731 n 731 (796)
+
T Consensus 159 ~ 159 (620)
T PRK14948 159 T 159 (620)
T ss_pred C
Confidence 5
No 142
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.27 E-value=4.4e-06 Score=92.38 Aligned_cols=138 Identities=14% Similarity=0.153 Sum_probs=95.0
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCC-
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD- 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~- 659 (796)
++|+..++..+.+.+.++- +....+|+.|.+| +||+.+|++|-..-.... ..|+.+|++... +..-.+.+-|.
T Consensus 1 liG~S~~m~~~~~~~~~~a--~~~~pVLI~GE~G--tGK~~lAr~iH~~s~r~~-~pfv~vnc~~~~-~~~l~~~lfG~~ 74 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA--PLDRPVLIIGERG--TGKELIAARLHYLSKRWQ-GPLVKLNCAALS-ENLLDSELFGHE 74 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh--CCCCCEEEECCCC--ChHHHHHHHHHHhcCccC-CCeEEEeCCCCC-hHHHHHHHhccc
Confidence 4788888888888877664 3456789999999 999999999988766555 789999998542 21111111111
Q ss_pred -CCCCCCC--chhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCC
Q 003769 660 -VELGCCS--YIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 660 -~~~~~~~--~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn 731 (796)
..|.|.. -.|. +..--..+++||||+.. .+ .+|.-|++++++|.++--.|...--.|+-||.||+
T Consensus 75 ~g~~~ga~~~~~G~----~~~a~gGtL~Ldei~~L--~~-~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~ 142 (329)
T TIGR02974 75 AGAFTGAQKRHQGR----FERADGGTLFLDELATA--SL-LVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATN 142 (329)
T ss_pred cccccCcccccCCc----hhhCCCCEEEeCChHhC--CH-HHHHHHHHHHHcCcEEecCCCceeccceEEEEech
Confidence 0122221 0112 22334678999999999 99 99999999999999875444333335667888876
No 143
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=5.4e-06 Score=97.68 Aligned_cols=128 Identities=15% Similarity=0.223 Sum_probs=81.8
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCC-CceEEecCCCCccccccccccCCC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHS-NNFTNLSSSQSRQDDCRTKKRSRD 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~-~~~i~~dms~~~~~~~~~~k~~~~ 659 (796)
|+||+.++..+-.+|.. ++..-.+||.||.| +|||.+|+.||+.+++... ...-+-.+. +.-. +..+. .
T Consensus 18 iiGqe~iv~~L~~~i~~---~~i~hayLf~Gp~G--~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~--~C~~--i~~~~-~ 87 (563)
T PRK06647 18 LEGQDFVVETLKHSIES---NKIANAYIFSGPRG--VGKTSSARAFARCLNCVNGPTPMPCGECS--SCKS--IDNDN-S 87 (563)
T ss_pred ccCcHHHHHHHHHHHHc---CCCCeEEEEECCCC--CCHHHHHHHHHHhhccccCCCCCCCccch--HHHH--HHcCC-C
Confidence 89999999988777753 34445799999999 9999999999999987420 111000000 0000 00000 0
Q ss_pred CC---CCCC--Cchh---hHHHHHHh----CCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEE
Q 003769 660 VE---LGCC--SYIE---RLGLALNE----NPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIII 727 (796)
Q Consensus 660 ~~---~~~~--~~~~---~L~eavr~----~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~Iii 727 (796)
++ +.|. ..++ .+.+.+.. .+|.|+++||++.. .. ..+|.|+..+++ .-.+++||
T Consensus 88 ~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L--s~-~a~naLLK~LEe-----------pp~~~vfI 153 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML--SN-SAFNALLKTIEE-----------PPPYIVFI 153 (563)
T ss_pred CCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc--CH-HHHHHHHHhhcc-----------CCCCEEEE
Confidence 10 1111 1122 34444443 56789999999999 98 899999999986 22588899
Q ss_pred eeCCC
Q 003769 728 FSCDS 732 (796)
Q Consensus 728 lTsn~ 732 (796)
|+++-
T Consensus 154 ~~tte 158 (563)
T PRK06647 154 FATTE 158 (563)
T ss_pred EecCC
Confidence 97753
No 144
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.26 E-value=3.1e-06 Score=103.56 Aligned_cols=125 Identities=10% Similarity=0.124 Sum_probs=78.1
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeeccccc---------ccchHHHHHHHHHHHHHHHhccC
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFR---------NQSKGEVEQKLVELSCHVKSYMG 277 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~---------a~~rge~E~rl~~l~~~v~~~~~ 277 (796)
+.+++|+||||||||++++.||..+ +..++.++++.+. ..|.|....++.+.+..+..
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l----------~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~--- 413 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKAL----------NRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKT--- 413 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh----------cCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCc---
Confidence 3468899999999999999999976 3456766654432 14666666777776665543
Q ss_pred CCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhh---------h-cC---CCCcEEEEEecChHHH
Q 003769 278 RGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVF---------E-IG---ESERVWIMGIASFQTY 344 (796)
Q Consensus 278 ~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~---------~-~~---~~G~l~~IGatT~~ey 344 (796)
.+.|+||||++.+.... .| ++.++ |-.++. . ++ .-+.+.+|+||+.-
T Consensus 414 ~~~villDEidk~~~~~-------~~-------~~~~a----Ll~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~-- 473 (775)
T TIGR00763 414 KNPLFLLDEIDKIGSSF-------RG-------DPASA----LLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSI-- 473 (775)
T ss_pred CCCEEEEechhhcCCcc-------CC-------CHHHH----HHHhcCHHhcCccccccCCceeccCCEEEEEecCCc--
Confidence 23478999999997531 11 12222 222221 1 01 01467888877652
Q ss_pred HHhhhcCccccccccceecccCCCC
Q 003769 345 TRCKAGHPSLENMWKLHPFTIPVGS 369 (796)
Q Consensus 345 ~k~~~~dpaLerrf~lq~V~vp~~~ 369 (796)
-..+|+|-+||++ |.+|..+
T Consensus 474 ---~~i~~~L~~R~~v--i~~~~~~ 493 (775)
T TIGR00763 474 ---DTIPRPLLDRMEV--IELSGYT 493 (775)
T ss_pred ---hhCCHHHhCCeeE--EecCCCC
Confidence 2468999999854 4555433
No 145
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.26 E-value=7.6e-06 Score=86.11 Aligned_cols=66 Identities=14% Similarity=0.271 Sum_probs=56.2
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
.-+|++|.|+.|||||++|+++..+.... |.++|.++-..|.. |.+|++.++.. ....|||+|
T Consensus 51 pannvLL~G~rGtGKSSlVkall~~y~~~-------GLRlIev~k~~L~~---------l~~l~~~l~~~-~~kFIlf~D 113 (249)
T PF05673_consen 51 PANNVLLWGARGTGKSSLVKALLNEYADQ-------GLRLIEVSKEDLGD---------LPELLDLLRDR-PYKFILFCD 113 (249)
T ss_pred CCcceEEecCCCCCHHHHHHHHHHHHhhc-------CceEEEECHHHhcc---------HHHHHHHHhcC-CCCEEEEec
Confidence 77999999999999999999999988643 57899998776665 77888888865 668999999
Q ss_pred chh
Q 003769 286 DLK 288 (796)
Q Consensus 286 Elh 288 (796)
||.
T Consensus 114 DLs 116 (249)
T PF05673_consen 114 DLS 116 (249)
T ss_pred CCC
Confidence 985
No 146
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.26 E-value=4e-06 Score=89.92 Aligned_cols=122 Identities=20% Similarity=0.339 Sum_probs=84.6
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCce----EEecCCCCcccccccccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNF----TNLSSSQSRQDDCRTKKR 656 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~----i~~dms~~~~~~~~~~k~ 656 (796)
+.||+.+|..+-+++.+ | -.--+||.||.| +|||..|+++|+.+||-+ .| ..++-|.. .+...+
T Consensus 38 ~~gQe~vV~~L~~a~~~-~---~lp~~LFyGPpG--TGKTStalafar~L~~~~--~~~~rvl~lnaSde-rGisvv--- 105 (346)
T KOG0989|consen 38 LAGQEHVVQVLKNALLR-R---ILPHYLFYGPPG--TGKTSTALAFARALNCEQ--LFPCRVLELNASDE-RGISVV--- 105 (346)
T ss_pred hcchHHHHHHHHHHHhh-c---CCceEEeeCCCC--CcHhHHHHHHHHHhcCcc--ccccchhhhccccc-ccccch---
Confidence 79999999999999987 2 334899999999 999999999999999932 22 22232321 111100
Q ss_pred CCCCCCCCCCchhhHHHHH------HhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeC
Q 003769 657 SRDVELGCCSYIERLGLAL------NENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSC 730 (796)
Q Consensus 657 ~~~~~~~~~~~~~~L~eav------r~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTs 730 (796)
+ ..-..| .+|+-.. --.||.||+|||.|-. .. +.|+.|.+.||+ . -+++.|||-|
T Consensus 106 ---r-~Kik~f-akl~~~~~~~~~~~~~~fKiiIlDEcdsm--ts-daq~aLrr~mE~--~---------s~~trFiLIc 166 (346)
T KOG0989|consen 106 ---R-EKIKNF-AKLTVLLKRSDGYPCPPFKIIILDECDSM--TS-DAQAALRRTMED--F---------SRTTRFILIC 166 (346)
T ss_pred ---h-hhhcCH-HHHhhccccccCCCCCcceEEEEechhhh--hH-HHHHHHHHHHhc--c---------ccceEEEEEc
Confidence 0 000011 1222222 1257899999999999 88 999999999986 1 2678899989
Q ss_pred CCC
Q 003769 731 DSL 733 (796)
Q Consensus 731 n~~ 733 (796)
|..
T Consensus 167 nyl 169 (346)
T KOG0989|consen 167 NYL 169 (346)
T ss_pred CCh
Confidence 864
No 147
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.24 E-value=4.9e-06 Score=86.08 Aligned_cols=80 Identities=16% Similarity=0.166 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhh--ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHH
Q 003769 194 DDVMSVLNALIN--KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCH 271 (796)
Q Consensus 194 ~ei~~vi~~L~r--~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~ 271 (796)
+.+...+..+.. ..++++|+||||||||++++.++.+.... +..++.++...+.. +..+++..
T Consensus 23 ~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~-------~~~~~~i~~~~~~~--------~~~~~~~~ 87 (226)
T TIGR03420 23 AELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER-------GKSAIYLPLAELAQ--------ADPEVLEG 87 (226)
T ss_pred HHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc-------CCcEEEEeHHHHHH--------hHHHHHhh
Confidence 334444444433 67788899999999999999999886532 35677787665543 22344444
Q ss_pred HHhccCCCEEEEEcchhhhhh
Q 003769 272 VKSYMGRGIVLYLGDLKWVAE 292 (796)
Q Consensus 272 v~~~~~~~~ILfIDElh~l~~ 292 (796)
++. ..+|||||+|++-.
T Consensus 88 ~~~----~~lLvIDdi~~l~~ 104 (226)
T TIGR03420 88 LEQ----ADLVCLDDVEAIAG 104 (226)
T ss_pred ccc----CCEEEEeChhhhcC
Confidence 432 34899999999864
No 148
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=5.5e-06 Score=91.04 Aligned_cols=131 Identities=15% Similarity=0.140 Sum_probs=84.6
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCc--eEEecCCCCc-ccccccc---
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNN--FTNLSSSQSR-QDDCRTK--- 654 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~--~i~~dms~~~-~~~~~~~--- 654 (796)
|+||++++..+.+++..-|- .-.+||.||.| +||+.+|+++|+.+++.. .. -.+..+.... ++-+.+.
T Consensus 6 iiGq~~~~~~L~~~i~~~rl---~ha~Lf~G~~G--~Gk~~~A~~~a~~llc~~-~c~~c~~~~~~~~~hPDl~~i~p~~ 79 (314)
T PRK07399 6 LIGQPLAIELLTAAIKQNRI---APAYLFAGPEG--VGRKLAALCFIEGLLSQG-SPSKNIRRRLEEGNHPDLLWVEPTY 79 (314)
T ss_pred hCCHHHHHHHHHHHHHhCCC---CceEEEECCCC--CCHHHHHHHHHHHHcCCC-CCCCcHhcccccCCCCCEEEEeccc
Confidence 89999999999888875443 23677999999 999999999999999863 10 0000011000 0001000
Q ss_pred --cc--C------------CCCCCCCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecC
Q 003769 655 --KR--S------------RDVELGCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALA 714 (796)
Q Consensus 655 --k~--~------------~~~~~~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~ 714 (796)
++ . .+++..+-+.+..+.+.+...| |+||+||++|+. +. ...|.|+..+|+
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m--~~-~aaNaLLK~LEE------ 150 (314)
T PRK07399 80 QHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM--NE-AAANALLKTLEE------ 150 (314)
T ss_pred cccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc--CH-HHHHHHHHHHhC------
Confidence 00 0 0000000112235667676555 589999999999 99 999999999987
Q ss_pred CCceecCCcEEEEeeCCC
Q 003769 715 DGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 715 ~G~~v~~~n~IiilTsn~ 732 (796)
-+ +++|||+|+.
T Consensus 151 ----Pp--~~~fILi~~~ 162 (314)
T PRK07399 151 ----PG--NGTLILIAPS 162 (314)
T ss_pred ----CC--CCeEEEEECC
Confidence 22 6778887763
No 149
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.21 E-value=2.2e-06 Score=94.81 Aligned_cols=105 Identities=21% Similarity=0.325 Sum_probs=77.4
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDV 660 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~ 660 (796)
|+||+..+-. -..|+|.-......+++|+||+| +|||++|+.||... +. +|..|+-.-.+
T Consensus 26 ~vGQ~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG--~GKTTlA~liA~~~-~~---~f~~~sAv~~g------------- 85 (436)
T COG2256 26 VVGQEHLLGE-GKPLRRAVEAGHLHSMILWGPPG--TGKTTLARLIAGTT-NA---AFEALSAVTSG------------- 85 (436)
T ss_pred hcChHhhhCC-CchHHHHHhcCCCceeEEECCCC--CCHHHHHHHHHHhh-CC---ceEEecccccc-------------
Confidence 7999998855 34444444477889999999999 99999999999965 43 48877654221
Q ss_pred CCCCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEe
Q 003769 661 ELGCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIA 712 (796)
Q Consensus 661 ~~~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~ 712 (796)
-.-+....|.-+++- ..|+|+|||-.- +. .-|+.||-.+|+|.++
T Consensus 86 ----vkdlr~i~e~a~~~~~~gr~tiLflDEIHRf--nK-~QQD~lLp~vE~G~ii 134 (436)
T COG2256 86 ----VKDLREIIEEARKNRLLGRRTILFLDEIHRF--NK-AQQDALLPHVENGTII 134 (436)
T ss_pred ----HHHHHHHHHHHHHHHhcCCceEEEEehhhhc--Ch-hhhhhhhhhhcCCeEE
Confidence 111223333333322 478999999999 99 9999999999999987
No 150
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.21 E-value=8.5e-06 Score=84.87 Aligned_cols=78 Identities=10% Similarity=0.048 Sum_probs=53.3
Q ss_pred ChHHHHHHHHHHhh---ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHH
Q 003769 192 DSDDVMSVLNALIN---KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVEL 268 (796)
Q Consensus 192 r~~ei~~vi~~L~r---~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l 268 (796)
+++++...+..+.. ..++++|+||||||||+++.+++...... +..++.++...+.. .
T Consensus 24 ~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-------~~~~~~i~~~~~~~--------~---- 84 (227)
T PRK08903 24 ENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-------GRNARYLDAASPLL--------A---- 84 (227)
T ss_pred CcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCcEEEEehHHhHH--------H----
Confidence 45566666666644 45678899999999999999999976543 45677777654321 1
Q ss_pred HHHHHhccCCCEEEEEcchhhhhh
Q 003769 269 SCHVKSYMGRGIVLYLGDLKWVAE 292 (796)
Q Consensus 269 ~~~v~~~~~~~~ILfIDElh~l~~ 292 (796)
+... ...-+|||||+|++-.
T Consensus 85 ~~~~----~~~~~liiDdi~~l~~ 104 (227)
T PRK08903 85 FDFD----PEAELYAVDDVERLDD 104 (227)
T ss_pred Hhhc----ccCCEEEEeChhhcCc
Confidence 1111 2346899999998743
No 151
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=1.1e-05 Score=92.61 Aligned_cols=137 Identities=12% Similarity=0.123 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhh--ccCc-eEEEcCCcccHHHHHHHHHHHHHcCCCCC--------------CCCCceEEEeeccccccc
Q 003769 194 DDVMSVLNALIN--KKRN-TVIVGGNLAAIEGVIRGIIDQFERGQVPG--------------DLRYAQFISLPLFSFRNQ 256 (796)
Q Consensus 194 ~ei~~vi~~L~r--~k~n-~vLvGepGvGKTaiv~~la~ri~~~~vp~--------------~L~~~~v~~l~~~~l~a~ 256 (796)
+.+...+..+.+ +-.+ .+|+||||||||++++.+|+.+....-+. ......|+.+|.++
T Consensus 24 e~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas---- 99 (484)
T PRK14956 24 DLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAAS---- 99 (484)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhh----
Confidence 444444443333 3333 68999999999999999999875421110 01112455555422
Q ss_pred chHHHHHHHHHHHHHHHhcc--CCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEE
Q 003769 257 SKGEVEQKLVELSCHVKSYM--GRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVW 334 (796)
Q Consensus 257 ~rge~E~rl~~l~~~v~~~~--~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~ 334 (796)
.+| -..++++++.+.... ++..|+||||+|.|-.. +.|.-||.|-. -.+.+.
T Consensus 100 ~~g--Vd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~---------------------A~NALLKtLEE---Pp~~vi 153 (484)
T PRK14956 100 NRG--IENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQ---------------------SFNALLKTLEE---PPAHIV 153 (484)
T ss_pred ccc--HHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHH---------------------HHHHHHHHhhc---CCCceE
Confidence 111 123455666555321 45679999999998653 33331333321 147899
Q ss_pred EEEecChHHHHHhhhcCcccccc---ccceeccc
Q 003769 335 IMGIASFQTYTRCKAGHPSLENM---WKLHPFTI 365 (796)
Q Consensus 335 ~IGatT~~ey~k~~~~dpaLerr---f~lq~V~v 365 (796)
+|.+||. +. ...|++-+| |.|.+++.
T Consensus 154 FILaTte--~~---kI~~TI~SRCq~~~f~~ls~ 182 (484)
T PRK14956 154 FILATTE--FH---KIPETILSRCQDFIFKKVPL 182 (484)
T ss_pred EEeecCC--hh---hccHHHHhhhheeeecCCCH
Confidence 9999986 33 344677777 55555544
No 152
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=9.2e-06 Score=94.91 Aligned_cols=156 Identities=16% Similarity=0.186 Sum_probs=106.8
Q ss_pred HHHHHHHHhhcCCCCCCcchHHHHHHHHHHHhhc--cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCC
Q 003769 567 NLKVLSDALERKAVVPWQKEIMPEIARTILECRS--KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSS 644 (796)
Q Consensus 567 ~L~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~rs--~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms 644 (796)
.|..-...|.+. =.|=++.-+.|-.-|.-++. .-.---++|.||+| ||||.+||.+|+.| |.+ |.||...
T Consensus 401 dl~~Ak~iLdeD--HYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPG--VGKTSI~kSIA~AL-nRk---FfRfSvG 472 (906)
T KOG2004|consen 401 DLARAKEILDED--HYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPG--VGKTSIAKSIARAL-NRK---FFRFSVG 472 (906)
T ss_pred hHHHHHHhhccc--ccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCC--CCcccHHHHHHHHh-CCc---eEEEecc
Confidence 345556677777 78888888888887766666 33345789999999 99999999999999 554 9999876
Q ss_pred CCccccccccccCCCCCCCCCCchhhHHHHHHhC--CCEEEEEcccccCCC-ChHHHHHHHHHHHHc---ceEecCC-Cc
Q 003769 645 QSRQDDCRTKKRSRDVELGCCSYIERLGLALNEN--PHRVFFMEDLDDHKV-DSCYCQKGLKQAIEN---GCIALAD-GE 717 (796)
Q Consensus 645 ~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~--P~~Vvl~deieka~~-~~~~v~~~l~q~~d~---G~l~d~~-G~ 717 (796)
-- ++ .+-.|+-+ +-|+|+ -.|++.+++++- -.-|||||||||-|- |.-|=-..||..+|- -.+.|.. .-
T Consensus 473 G~-tD-vAeIkGHR-RTYVGA-MPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdV 548 (906)
T KOG2004|consen 473 GM-TD-VAEIKGHR-RTYVGA-MPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDV 548 (906)
T ss_pred cc-cc-HHhhcccc-eeeecc-CChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhcccc
Confidence 32 11 11122222 224443 236888888752 223899999998754 111334578888873 4555544 35
Q ss_pred eecCCcEEEEeeCCCCC
Q 003769 718 IVPLKDSIIIFSCDSLD 734 (796)
Q Consensus 718 ~v~~~n~IiilTsn~~~ 734 (796)
.+|++..+||+|.|..+
T Consensus 549 p~DLSkVLFicTAN~id 565 (906)
T KOG2004|consen 549 PVDLSKVLFICTANVID 565 (906)
T ss_pred ccchhheEEEEeccccc
Confidence 79999999999999754
No 153
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.20 E-value=5.9e-06 Score=93.88 Aligned_cols=76 Identities=17% Similarity=0.238 Sum_probs=58.6
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc-cchHH-HHHHHHHHHHH----HHhccCCC
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN-QSKGE-VEQKLVELSCH----VKSYMGRG 279 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a-~~rge-~E~rl~~l~~~----v~~~~~~~ 279 (796)
.+.|++|+||||||||++++.||.++ +..|+.+|...+.. .|.|+ .+..+..+++. ++. ..+
T Consensus 107 ~~~~iLl~Gp~GtGKT~lAr~lA~~l----------~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~--a~~ 174 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLAQTLARIL----------DVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEK--AQR 174 (412)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh----------CCCceecchhhcccCCcccchHHHHHHHHHHhccccHHH--cCC
Confidence 46899999999999999999999865 35688888877764 67776 55556665543 222 356
Q ss_pred EEEEEcchhhhhhh
Q 003769 280 IVLYLGDLKWVAEF 293 (796)
Q Consensus 280 ~ILfIDElh~l~~~ 293 (796)
.||||||++.+...
T Consensus 175 gIi~iDEIdkl~~~ 188 (412)
T PRK05342 175 GIVYIDEIDKIARK 188 (412)
T ss_pred cEEEEechhhhccc
Confidence 89999999999875
No 154
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.20 E-value=7.8e-06 Score=82.73 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=69.0
Q ss_pred cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEec-C---CCCccccccccccCCCC-CCCCCCchhhHHHHH
Q 003769 601 KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLS-S---SQSRQDDCRTKKRSRDV-ELGCCSYIERLGLAL 675 (796)
Q Consensus 601 ~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~d-m---s~~~~~~~~~~k~~~~~-~~~~~~~~~~L~eav 675 (796)
++....+||.||+| +|||++|+.+|+.+++.....-.... + .......|.-....... ...+...+..+.+.+
T Consensus 11 ~~~~~~~L~~G~~G--~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~ 88 (188)
T TIGR00678 11 GRLAHAYLFAGPEG--VGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFL 88 (188)
T ss_pred CCCCeEEEEECCCC--CCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHH
Confidence 45557899999999 99999999999999975201000000 0 00000000000000000 000111223446666
Q ss_pred Hh----CCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCC
Q 003769 676 NE----NPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 676 r~----~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn 731 (796)
.. .+++||++||+|+. .. +.++.|+..+++. -.+++|||+++
T Consensus 89 ~~~~~~~~~kviiide~~~l--~~-~~~~~Ll~~le~~-----------~~~~~~il~~~ 134 (188)
T TIGR00678 89 SRTPQESGRRVVIIEDAERM--NE-AAANALLKTLEEP-----------PPNTLFILITP 134 (188)
T ss_pred ccCcccCCeEEEEEechhhh--CH-HHHHHHHHHhcCC-----------CCCeEEEEEEC
Confidence 65 55789999999999 99 9999999999652 15788888876
No 155
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.19 E-value=3.1e-06 Score=78.16 Aligned_cols=118 Identities=11% Similarity=0.070 Sum_probs=72.9
Q ss_pred eEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCcccccccc---ccCC--CCCCCCCCchhhHHHHHHhCC
Q 003769 605 TWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTK---KRSR--DVELGCCSYIERLGLALNENP 679 (796)
Q Consensus 605 ~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~---k~~~--~~~~~~~~~~~~L~eavr~~P 679 (796)
..++|.||+| +|||.++++||..++... ..++.++++.. ....... .... .....+......+.+.++.++
T Consensus 3 ~~~~l~G~~G--~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPG--SGKTTLARALARELGPPG-GGVIYIDGEDI-LEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCC--CcHHHHHHHHHhccCCCC-CCEEEECCEEc-cccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 4578999999 999999999999998764 46888888743 1111000 0000 011111223357888888888
Q ss_pred CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 680 HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 680 ~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
+.||++||+... .. ............ ....-......+..+|+++|.
T Consensus 79 ~~viiiDei~~~--~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 79 PDVLILDEITSL--LD-AEQEALLLLLEE---LRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCEEEEECCccc--CC-HHHHHHHHhhhh---hHHHHHHHhcCCCEEEEEeCC
Confidence 999999999999 65 333332222111 111112344577888888883
No 156
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=1e-05 Score=90.21 Aligned_cols=131 Identities=18% Similarity=0.242 Sum_probs=82.2
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCc-e--EEecCCC-Cc-------cc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNN-F--TNLSSSQ-SR-------QD 649 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~-~--i~~dms~-~~-------~~ 649 (796)
|+||++++..+..++...|. |- -+||.||.| +|||.+|+.+|+.+++.. .. . ..+.-.. .. .+
T Consensus 25 l~Gh~~a~~~L~~a~~~grl--~h-a~L~~G~~G--~GKttlA~~lA~~Llc~~-~~~~~~~~~~~~~~~c~~c~~i~~~ 98 (351)
T PRK09112 25 LFGHEEAEAFLAQAYREGKL--HH-ALLFEGPEG--IGKATLAFHLANHILSHP-DPAEAPETLADPDPASPVWRQIAQG 98 (351)
T ss_pred ccCcHHHHHHHHHHHHcCCC--Ce-eEeeECCCC--CCHHHHHHHHHHHHcCCC-ccccCccccCCCCCCCHHHHHHHcC
Confidence 89999999999888864432 33 455999999 999999999999999843 11 1 1111000 00 01
Q ss_pred cccccccC-CCCCCC-C-------CCchhhHHHHHH----hCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCC
Q 003769 650 DCRTKKRS-RDVELG-C-------CSYIERLGLALN----ENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADG 716 (796)
Q Consensus 650 ~~~~~k~~-~~~~~~-~-------~~~~~~L~eavr----~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G 716 (796)
.|.-.... ++.+.. | -+.+-.+.+.+. ...|+||++||+|+. ++ ..+|.|+..+|+..
T Consensus 99 ~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l--~~-~aanaLLk~LEEpp------ 169 (351)
T PRK09112 99 AHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM--NR-NAANAILKTLEEPP------ 169 (351)
T ss_pred CCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc--CH-HHHHHHHHHHhcCC------
Confidence 11000000 000000 0 011224555554 457899999999999 99 99999999998732
Q ss_pred ceecCCcEEEEeeCC
Q 003769 717 EIVPLKDSIIIFSCD 731 (796)
Q Consensus 717 ~~v~~~n~IiilTsn 731 (796)
.+++|||.|+
T Consensus 170 -----~~~~fiLit~ 179 (351)
T PRK09112 170 -----ARALFILISH 179 (351)
T ss_pred -----CCceEEEEEC
Confidence 4678888765
No 157
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.17 E-value=9.3e-06 Score=88.25 Aligned_cols=115 Identities=26% Similarity=0.453 Sum_probs=78.6
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCC--ceEEecCCCCccccccccccCC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSN--NFTNLSSSQSRQDDCRTKKRSR 658 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~--~~i~~dms~~~~~~~~~~k~~~ 658 (796)
++||++++..+...+.. .+. .-++|.||.| +|||.+|+.+++.+++.. . +++.++.+...
T Consensus 19 ~~g~~~~~~~l~~~i~~---~~~-~~~ll~G~~G--~GKt~~~~~l~~~l~~~~-~~~~~i~~~~~~~~----------- 80 (319)
T PRK00440 19 IVGQEEIVERLKSYVKE---KNM-PHLLFAGPPG--TGKTTAALALARELYGED-WRENFLELNASDER----------- 80 (319)
T ss_pred hcCcHHHHHHHHHHHhC---CCC-CeEEEECCCC--CCHHHHHHHHHHHHcCCc-cccceEEecccccc-----------
Confidence 67999999888877743 111 2369999999 999999999999998764 3 34444433210
Q ss_pred CCCCCCCCch-hhHHHHHHh-----CCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 659 DVELGCCSYI-ERLGLALNE-----NPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 659 ~~~~~~~~~~-~~L~eavr~-----~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
+.... ..+.+..+. .++.||++||++.. .. +.++.|++.+++.. .++++|+++|.
T Consensus 81 -----~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l--~~-~~~~~L~~~le~~~-----------~~~~lIl~~~~ 141 (319)
T PRK00440 81 -----GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNL--TS-DAQQALRRTMEMYS-----------QNTRFILSCNY 141 (319)
T ss_pred -----chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccC--CH-HHHHHHHHHHhcCC-----------CCCeEEEEeCC
Confidence 01111 233333333 45679999999999 88 88999999987531 35678888863
No 158
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.17 E-value=8.5e-06 Score=94.44 Aligned_cols=100 Identities=13% Similarity=0.124 Sum_probs=68.1
Q ss_pred eEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCC--chhhHHHHHHhCCCEE
Q 003769 605 TWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCS--YIERLGLALNENPHRV 682 (796)
Q Consensus 605 ~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~--~~~~L~eavr~~P~~V 682 (796)
--+||.||+| +|||.+||++|..+ | -.|+++|++... .+|.|.+ .+.++....+...-+|
T Consensus 260 kGILL~GPpG--TGKTllAkaiA~e~-~---~~~~~l~~~~l~------------~~~vGese~~l~~~f~~A~~~~P~I 321 (489)
T CHL00195 260 RGLLLVGIQG--TGKSLTAKAIANDW-Q---LPLLRLDVGKLF------------GGIVGESESRMRQMIRIAEALSPCI 321 (489)
T ss_pred ceEEEECCCC--CcHHHHHHHHHHHh-C---CCEEEEEhHHhc------------ccccChHHHHHHHHHHHHHhcCCcE
Confidence 3467999999 99999999999987 4 459999987431 0123332 2346666667777899
Q ss_pred EEEcccccCCC------Ch---HHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCCC
Q 003769 683 FFMEDLDDHKV------DS---CYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDSL 733 (796)
Q Consensus 683 vl~deieka~~------~~---~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~~ 733 (796)
|+|||||++-- +. ..+++.|++.+++. -++.+||+|||..
T Consensus 322 L~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~-----------~~~V~vIaTTN~~ 370 (489)
T CHL00195 322 LWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK-----------KSPVFVVATANNI 370 (489)
T ss_pred EEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC-----------CCceEEEEecCCh
Confidence 99999997511 10 13555666666531 1457888999854
No 159
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.16 E-value=1e-05 Score=87.87 Aligned_cols=121 Identities=22% Similarity=0.291 Sum_probs=81.0
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCe-EEEEecCCCCCchHHHHHHHHHHHHcCCCC--------------------CceE
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQT-WLLFLGADDHNHGKEKIAREIAKVVFGSHS--------------------NNFT 639 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~-~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~--------------------~~~i 639 (796)
+.++.+++..+-..+.... ... -+||.||+| +|||.+|.+||+.+||... .+++
T Consensus 3 ~~~~~~~~~~l~~~~~~~~---~~~halL~~Gp~G--~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 3 LVPWQEAVKRLLVQALESG---RLPHALLFYGPPG--VGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred cccchhHHHHHHHHHHhcC---CCCceeeeeCCCC--CCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 4555555555555544222 222 488999999 9999999999999998651 2333
Q ss_pred EecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhC----CCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCC
Q 003769 640 NLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNEN----PHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALAD 715 (796)
Q Consensus 640 ~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~----P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~ 715 (796)
.++-|....-. ..-..+..+.+..... ++.||++||+|+- ++ +.+|.++..+++
T Consensus 78 el~~s~~~~~~------------i~~~~vr~~~~~~~~~~~~~~~kviiidead~m--t~-~A~nallk~lEe------- 135 (325)
T COG0470 78 ELNPSDLRKID------------IIVEQVRELAEFLSESPLEGGYKVVIIDEADKL--TE-DAANALLKTLEE------- 135 (325)
T ss_pred EecccccCCCc------------chHHHHHHHHHHhccCCCCCCceEEEeCcHHHH--hH-HHHHHHHHHhcc-------
Confidence 33333211000 0112233444444444 5899999999999 99 999999999964
Q ss_pred CceecCCcEEEEeeCCC
Q 003769 716 GEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 716 G~~v~~~n~IiilTsn~ 732 (796)
.=.|+.|||+||.
T Consensus 136 ----p~~~~~~il~~n~ 148 (325)
T COG0470 136 ----PPKNTRFILITND 148 (325)
T ss_pred ----CCCCeEEEEEcCC
Confidence 4489999999984
No 160
>PRK05642 DNA replication initiation factor; Validated
Probab=98.16 E-value=1.1e-05 Score=84.94 Aligned_cols=110 Identities=17% Similarity=0.180 Sum_probs=72.4
Q ss_pred CceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEcch
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLGDL 287 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfIDEl 287 (796)
++++|+|++|+|||+++.+++..+.+. +.+++.++...+... ..++++.++.. -+|+|||+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~-------~~~v~y~~~~~~~~~--------~~~~~~~~~~~----d~LiiDDi 106 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR-------GEPAVYLPLAELLDR--------GPELLDNLEQY----ELVCLDDL 106 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC-------CCcEEEeeHHHHHhh--------hHHHHHhhhhC----CEEEEech
Confidence 566789999999999999999887532 467788886665542 23455555542 47999999
Q ss_pred hhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccccc
Q 003769 288 KWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLENMW 358 (796)
Q Consensus 288 h~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLerrf 358 (796)
+.+.+. .. .. .+|..+....-++|...+|++++...+.. ...|.|.+||
T Consensus 107 ~~~~~~-------~~---------~~----~~Lf~l~n~~~~~g~~ilits~~~p~~l~--~~~~~L~SRl 155 (234)
T PRK05642 107 DVIAGK-------AD---------WE----EALFHLFNRLRDSGRRLLLAASKSPRELP--IKLPDLKSRL 155 (234)
T ss_pred hhhcCC-------hH---------HH----HHHHHHHHHHHhcCCEEEEeCCCCHHHcC--ccCccHHHHH
Confidence 987643 11 00 11443332211478888999987655432 3578899986
No 161
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=2.3e-05 Score=87.92 Aligned_cols=146 Identities=14% Similarity=0.263 Sum_probs=96.9
Q ss_pred ChHHHHHHHHHHhh-----ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccc---------
Q 003769 192 DSDDVMSVLNALIN-----KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQS--------- 257 (796)
Q Consensus 192 r~~ei~~vi~~L~r-----~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~--------- 257 (796)
||+|+.++..+|.- .+.|+++.|+||||||++++-+++++.... + +..++.+|.-.....|
T Consensus 22 Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~-~----~~~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 22 REEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESS-A----NVEVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred cHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhh-c----cCceEEEeeeeCCCHHHHHHHHHHH
Confidence 99999999999863 788999999999999999999999987541 1 2226777743221100
Q ss_pred ------hH-HHHHHHHHHHHHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCC-
Q 003769 258 ------KG-EVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGE- 329 (796)
Q Consensus 258 ------rg-e~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~- 329 (796)
.| -.-+-++.+.+.+... +..+|+++||++.|+... | + . |=.|.+..++
T Consensus 97 ~~~~p~~g~~~~~~~~~l~~~~~~~-~~~~IvvLDEid~L~~~~----~--~---------~-------LY~L~r~~~~~ 153 (366)
T COG1474 97 LGKVPLTGDSSLEILKRLYDNLSKK-GKTVIVILDEVDALVDKD----G--E---------V-------LYSLLRAPGEN 153 (366)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHhc-CCeEEEEEcchhhhcccc----c--h---------H-------HHHHHhhcccc
Confidence 00 1222333344444443 678999999999999761 1 1 1 2234432221
Q ss_pred CCcEEEEEecChHHHHHhhhcCccccccccceecccCC
Q 003769 330 SERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTIPV 367 (796)
Q Consensus 330 ~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp~ 367 (796)
..++-+||.++...|..+ -||.+..+|....|..|+
T Consensus 154 ~~~v~vi~i~n~~~~~~~--ld~rv~s~l~~~~I~F~p 189 (366)
T COG1474 154 KVKVSIIAVSNDDKFLDY--LDPRVKSSLGPSEIVFPP 189 (366)
T ss_pred ceeEEEEEEeccHHHHHH--hhhhhhhccCcceeeeCC
Confidence 355788999888888654 678888887766666665
No 162
>PRK08181 transposase; Validated
Probab=98.13 E-value=9.6e-06 Score=87.23 Aligned_cols=130 Identities=13% Similarity=0.142 Sum_probs=77.7
Q ss_pred cCHHHHHHHHhcCC-------hHHHHHHHcCCChHHHHHHHHhhccCCCCCCCCCCCCCC--ChHHHHHHHHH--Hhhcc
Q 003769 139 IEVEQLVISILDDP-------SVSRVMREAGFSSSQVKIKVEENVPLGICSQSTNKSLGR--DSDDVMSVLNA--LINKK 207 (796)
Q Consensus 139 I~~eHLLLALL~d~-------~~a~vL~~~Gis~~~l~~~v~~~v~~~~~s~~p~g~ldp--r~~ei~~vi~~--L~r~k 207 (796)
.+.+..|..|++.. ...+.|+.+++.... .++. + +-...| ....+..+..+ ....+
T Consensus 40 ~~~~e~L~~ll~~E~~~R~~~~~~r~lk~A~~p~~~---tle~-f---------d~~~~~~~~~~~~~~L~~~~~~~~~~ 106 (269)
T PRK08181 40 WPAARFLAAIAEHELAERARRRIERHLAEAHLPPGK---TLDS-F---------DFEAVPMVSKAQVMAIAAGDSWLAKG 106 (269)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC---CHhh-C---------CccCCCCCCHHHHHHHHHHHHHHhcC
Confidence 55567777777632 245678888876431 2221 1 000112 22333333222 12277
Q ss_pred CceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccch-HHHHHHHHHHHHHHHhccCCCEEEEEcc
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSK-GEVEQKLVELSCHVKSYMGRGIVLYLGD 286 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~r-ge~E~rl~~l~~~v~~~~~~~~ILfIDE 286 (796)
.|++|+||||||||+++.+++..+.+. |+.++.+++..|+...+ ..-+..+.++++.+.. .-+|+|||
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~-------g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~----~dLLIIDD 175 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIEN-------GWRVLFTRTTDLVQKLQVARRELQLESAIAKLDK----FDLLILDD 175 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHc-------CCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhc----CCEEEEec
Confidence 899999999999999999999987643 57788888777766221 1122334445555543 46999999
Q ss_pred hhhhhh
Q 003769 287 LKWVAE 292 (796)
Q Consensus 287 lh~l~~ 292 (796)
++.+..
T Consensus 176 lg~~~~ 181 (269)
T PRK08181 176 LAYVTK 181 (269)
T ss_pred cccccC
Confidence 987543
No 163
>PRK09183 transposase/IS protein; Provisional
Probab=98.12 E-value=2.9e-05 Score=83.16 Aligned_cols=128 Identities=9% Similarity=0.061 Sum_probs=74.0
Q ss_pred cCHHHHHHHHhcCC-------hHHHHHHHcCCChHHHHHHHHhhccCCCCCCCCCCCCCC-ChH-HHHHHHHHHh--hcc
Q 003769 139 IEVEQLVISILDDP-------SVSRVMREAGFSSSQVKIKVEENVPLGICSQSTNKSLGR-DSD-DVMSVLNALI--NKK 207 (796)
Q Consensus 139 I~~eHLLLALL~d~-------~~a~vL~~~Gis~~~l~~~v~~~v~~~~~s~~p~g~ldp-r~~-ei~~vi~~L~--r~k 207 (796)
.+.+++|..|++.. ...+.++.+++....-.+.+. =...| .+. -+..+ ..+. ...
T Consensus 37 ~~~~e~l~~ll~~E~~~R~~~~~~~~~k~a~~p~~~~l~~fd-------------~~~~~~~~~~~i~~L-~~~~~i~~~ 102 (259)
T PRK09183 37 WSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYD-------------FTFATGAPQKQLQSL-RSLSFIERN 102 (259)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcHhhcc-------------cccCCCCCHHHHHHH-hcCCchhcC
Confidence 66677788887742 245667777776542222111 01122 222 22222 2222 167
Q ss_pred CceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccch-HHHHHHHHHHHHHHHhccCCCEEEEEcc
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSK-GEVEQKLVELSCHVKSYMGRGIVLYLGD 286 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~r-ge~E~rl~~l~~~v~~~~~~~~ILfIDE 286 (796)
.|++|+||||+|||+++.+|+..... +|.++..++...+...+. ...+.++..++.... ....+|+|||
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~-------~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~---~~~dlLiiDd 172 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVR-------AGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGV---MAPRLLIIDE 172 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH-------cCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHh---cCCCEEEEcc
Confidence 89999999999999999999887542 256777777666654221 112223444443321 2457999999
Q ss_pred hhhh
Q 003769 287 LKWV 290 (796)
Q Consensus 287 lh~l 290 (796)
++.+
T Consensus 173 lg~~ 176 (259)
T PRK09183 173 IGYL 176 (259)
T ss_pred cccC
Confidence 9764
No 164
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=2.8e-05 Score=89.98 Aligned_cols=136 Identities=13% Similarity=0.115 Sum_probs=77.5
Q ss_pred HHHHHHHHH-Hhh-ccCc-eEEEcCCcccHHHHHHHHHHHHHcCCCCC--------------CCCCceEEEeeccccccc
Q 003769 194 DDVMSVLNA-LIN-KKRN-TVIVGGNLAAIEGVIRGIIDQFERGQVPG--------------DLRYAQFISLPLFSFRNQ 256 (796)
Q Consensus 194 ~ei~~vi~~-L~r-~k~n-~vLvGepGvGKTaiv~~la~ri~~~~vp~--------------~L~~~~v~~l~~~~l~a~ 256 (796)
+.+...+.. +.+ +-.+ .+|+||||||||++|+.+|..+.....+. ......++.++.++ ..
T Consensus 20 ~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~--~~ 97 (472)
T PRK14962 20 DHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAAS--NR 97 (472)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcc--cC
Confidence 444444433 343 3333 68999999999999999999875321110 01122466666432 11
Q ss_pred chHHHHHHHHHHHHHHHhcc--CCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEE
Q 003769 257 SKGEVEQKLVELSCHVKSYM--GRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVW 334 (796)
Q Consensus 257 ~rge~E~rl~~l~~~v~~~~--~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~ 334 (796)
...+ ++++.+.+.... +..-|+||||+|.+... +.++ |...+.. ..+.+.
T Consensus 98 gid~----iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~------------------a~~~----LLk~LE~--p~~~vv 149 (472)
T PRK14962 98 GIDE----IRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE------------------AFNA----LLKTLEE--PPSHVV 149 (472)
T ss_pred CHHH----HHHHHHHHhhChhcCCeEEEEEEChHHhHHH------------------HHHH----HHHHHHh--CCCcEE
Confidence 2222 445555554321 34579999999999653 2222 3333311 147788
Q ss_pred EEEecChHHHHHhhhcCccccccccceecccC
Q 003769 335 IMGIASFQTYTRCKAGHPSLENMWKLHPFTIP 366 (796)
Q Consensus 335 ~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp 366 (796)
+|++||... ...|+|.+|+. .+..+
T Consensus 150 ~Ilattn~~-----kl~~~L~SR~~--vv~f~ 174 (472)
T PRK14962 150 FVLATTNLE-----KVPPTIISRCQ--VIEFR 174 (472)
T ss_pred EEEEeCChH-----hhhHHHhcCcE--EEEEC
Confidence 888887421 34788888864 44443
No 165
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.11 E-value=1.9e-05 Score=86.30 Aligned_cols=113 Identities=15% Similarity=0.232 Sum_probs=78.5
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDV 660 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~ 660 (796)
|+||++++..+...+.. .+....+||.||.| +|||.+|+++++.+ + ..++.++.++. ..
T Consensus 23 ~~~~~~~~~~l~~~~~~---~~~~~~lll~G~~G--~GKT~la~~l~~~~-~---~~~~~i~~~~~---~~--------- 81 (316)
T PHA02544 23 CILPAADKETFKSIVKK---GRIPNMLLHSPSPG--TGKTTVAKALCNEV-G---AEVLFVNGSDC---RI--------- 81 (316)
T ss_pred hcCcHHHHHHHHHHHhc---CCCCeEEEeeCcCC--CCHHHHHHHHHHHh-C---ccceEeccCcc---cH---------
Confidence 79999998887777652 33446777899999 99999999999987 3 33666766531 00
Q ss_pred CCCCCCch-hhHHHHHHh----CCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 661 ELGCCSYI-ERLGLALNE----NPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 661 ~~~~~~~~-~~L~eavr~----~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
..+ +.+.+.... .+++||+|||+|+. ...+.++.|+..+++-. +++.||+|||.
T Consensus 82 -----~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l--~~~~~~~~L~~~le~~~-----------~~~~~Ilt~n~ 140 (316)
T PHA02544 82 -----DFVRNRLTRFASTVSLTGGGKVIIIDEFDRL--GLADAQRHLRSFMEAYS-----------KNCSFIITANN 140 (316)
T ss_pred -----HHHHHHHHHHHHhhcccCCCeEEEEECcccc--cCHHHHHHHHHHHHhcC-----------CCceEEEEcCC
Confidence 001 112222222 36899999999977 54367888888887521 56789999984
No 166
>PRK06893 DNA replication initiation factor; Validated
Probab=98.10 E-value=1.7e-05 Score=83.20 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=42.8
Q ss_pred eEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEcchhh
Q 003769 210 TVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLGDLKW 289 (796)
Q Consensus 210 ~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfIDElh~ 289 (796)
.+|+||||+|||+++.+++..+.+. +.++..+++... +....++++.+++ .-+|+|||+|.
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~~-------~~~~~y~~~~~~--------~~~~~~~~~~~~~----~dlLilDDi~~ 102 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLLN-------QRTAIYIPLSKS--------QYFSPAVLENLEQ----QDLVCLDDLQA 102 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc-------CCCeEEeeHHHh--------hhhhHHHHhhccc----CCEEEEeChhh
Confidence 4788999999999999999987643 234444443221 1122334444443 36999999998
Q ss_pred hhhh
Q 003769 290 VAEF 293 (796)
Q Consensus 290 l~~~ 293 (796)
+.+.
T Consensus 103 ~~~~ 106 (229)
T PRK06893 103 VIGN 106 (229)
T ss_pred hcCC
Confidence 8643
No 167
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.10 E-value=1.3e-05 Score=81.98 Aligned_cols=97 Identities=12% Similarity=0.214 Sum_probs=61.6
Q ss_pred ChHHHHHHHHHHhh-ccCceEEEcCCcccHHHHHHHHHHHHHcCCCC----CCCCCceEEEeecccc-------------
Q 003769 192 DSDDVMSVLNALIN-KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVP----GDLRYAQFISLPLFSF------------- 253 (796)
Q Consensus 192 r~~ei~~vi~~L~r-~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp----~~L~~~~v~~l~~~~l------------- 253 (796)
|++|++++.+.+.+ ....++|+||.|+|||++++.+..++.....+ ..+...... .+..+
T Consensus 4 R~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~l~~~ 81 (234)
T PF01637_consen 4 REKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNES--SLRSFIEETSLADELSEA 81 (234)
T ss_dssp -HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHH--HHHHHHHHHHHHCHCHHH
T ss_pred HHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhh--HHHHHHHHHHHHHHHHHH
Confidence 89999999999987 67888899999999999999999987432211 111111000 00000
Q ss_pred cc-------------cchHHHHHHHHHHHHHHHhccCCCEEEEEcchhhhh
Q 003769 254 RN-------------QSKGEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVA 291 (796)
Q Consensus 254 ~a-------------~~rge~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~ 291 (796)
.. .........+..+++.+... +..+||+|||++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~iiviDe~~~~~ 131 (234)
T PF01637_consen 82 LGISIPSITLEKISKDLSEDSFSALERLLEKLKKK-GKKVIIVIDEFQYLA 131 (234)
T ss_dssp HHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHC-HCCEEEEEETGGGGG
T ss_pred HhhhcccccchhhhhcchhhHHHHHHHHHHHHHhc-CCcEEEEEecHHHHh
Confidence 00 01234567788888888874 445999999999999
No 168
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.10 E-value=2e-05 Score=92.21 Aligned_cols=139 Identities=14% Similarity=0.141 Sum_probs=94.9
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCC-
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD- 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~- 659 (796)
++||..++..+.+.|.+.-. ....+|+.|++| +||+.+|++|-..-.-.. ..|+.+|++... +..--+.+-|.
T Consensus 189 iig~s~~~~~~~~~i~~~a~--~~~pVlI~Ge~G--tGK~~~A~~ih~~s~r~~-~p~v~v~c~~~~-~~~~e~~lfG~~ 262 (509)
T PRK05022 189 MIGQSPAMQQLKKEIEVVAA--SDLNVLILGETG--VGKELVARAIHAASPRAD-KPLVYLNCAALP-ESLAESELFGHV 262 (509)
T ss_pred eeecCHHHHHHHHHHHHHhC--CCCcEEEECCCC--ccHHHHHHHHHHhCCcCC-CCeEEEEcccCC-hHHHHHHhcCcc
Confidence 89999999999999987543 345788999999 999999999999876666 789999999663 21111111111
Q ss_pred -CCCCCCC--chhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 660 -VELGCCS--YIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 660 -~~~~~~~--~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
..|.|.. ..|.+ ..---.+++|||||.. .+ .+|.-|++++++|.++--.|...-=-|+=||.||+.
T Consensus 263 ~g~~~ga~~~~~g~~----~~a~gGtL~ldeI~~L--~~-~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 263 KGAFTGAISNRSGKF----ELADGGTLFLDEIGEL--PL-ALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred ccccCCCcccCCcch----hhcCCCEEEecChhhC--CH-HHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 0111211 11222 1222467899999999 99 999999999999987643332211234557777763
No 169
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.10 E-value=9.2e-06 Score=92.55 Aligned_cols=100 Identities=20% Similarity=0.292 Sum_probs=72.0
Q ss_pred CCCcchHHHH---HHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccC
Q 003769 581 VPWQKEIMPE---IARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRS 657 (796)
Q Consensus 581 v~gQ~~av~~---ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~ 657 (796)
++||++++.. +.+.|. ......++|.||.| +|||.+|+.||+.+- ..|+.++.+...
T Consensus 14 ~vGq~~~v~~~~~L~~~i~----~~~~~~ilL~GppG--tGKTtLA~~ia~~~~----~~~~~l~a~~~~---------- 73 (413)
T PRK13342 14 VVGQEHLLGPGKPLRRMIE----AGRLSSMILWGPPG--TGKTTLARIIAGATD----APFEALSAVTSG---------- 73 (413)
T ss_pred hcCcHHHhCcchHHHHHHH----cCCCceEEEECCCC--CCHHHHHHHHHHHhC----CCEEEEeccccc----------
Confidence 7999998876 555553 22334788999999 999999999999872 347777765221
Q ss_pred CCCCCCCCCchhhHHHHH----HhCCCEEEEEcccccCCCChHHHHHHHHHHHHcce
Q 003769 658 RDVELGCCSYIERLGLAL----NENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGC 710 (796)
Q Consensus 658 ~~~~~~~~~~~~~L~eav----r~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~ 710 (796)
...+..+.+.. ..+.+.||+||||+.. .. ..++.|+..+++|.
T Consensus 74 -------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l--~~-~~q~~LL~~le~~~ 120 (413)
T PRK13342 74 -------VKDLREVIEEARQRRSAGRRTILFIDEIHRF--NK-AQQDALLPHVEDGT 120 (413)
T ss_pred -------HHHHHHHHHHHHHhhhcCCceEEEEechhhh--CH-HHHHHHHHHhhcCc
Confidence 01112233333 2346789999999999 99 99999999998764
No 170
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.09 E-value=5.5e-06 Score=82.34 Aligned_cols=43 Identities=14% Similarity=0.343 Sum_probs=32.6
Q ss_pred ChHHHHHHHHHHh--h--ccCceEEEcCCcccHHHHHHHHHHHHHcC
Q 003769 192 DSDDVMSVLNALI--N--KKRNTVIVGGNLAAIEGVIRGIIDQFERG 234 (796)
Q Consensus 192 r~~ei~~vi~~L~--r--~k~n~vLvGepGvGKTaiv~~la~ri~~~ 234 (796)
|++|+.++...|. . .+++++|+|++|+|||++++.++.++...
T Consensus 5 R~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 5 REEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999993 3 77889999999999999999999988765
No 171
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=1.4e-05 Score=88.41 Aligned_cols=130 Identities=15% Similarity=0.149 Sum_probs=82.6
Q ss_pred CCC-cchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCC-CceEEecCC---CCccccccccc
Q 003769 581 VPW-QKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHS-NNFTNLSSS---QSRQDDCRTKK 655 (796)
Q Consensus 581 v~g-Q~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~-~~~i~~dms---~~~~~~~~~~k 655 (796)
|+| |+.++..+...+. +++..-.+||.||.| +||+++|+.+|+.+++... ....+-.+. ......|.-..
T Consensus 7 i~~~q~~~~~~L~~~~~---~~~l~ha~Lf~G~~G--~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~ 81 (329)
T PRK08058 7 LTALQPVVVKMLQNSIA---KNRLSHAYLFEGAKG--TGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVH 81 (329)
T ss_pred HHhhHHHHHHHHHHHHH---cCCCCceEEEECCCC--CCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEE
Confidence 677 9999998888775 344556778999999 9999999999999997530 010000000 00001110000
Q ss_pred cCCCCCCCCCC-chh---hHHHHHHh----CCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEE
Q 003769 656 RSRDVELGCCS-YIE---RLGLALNE----NPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIII 727 (796)
Q Consensus 656 ~~~~~~~~~~~-~~~---~L~eavr~----~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~Iii 727 (796)
.+ .+ .|.. -++ .+.+.+.. .+++||+|||+|+. .. ..+|.|+..+|+- =++++||
T Consensus 82 ~i-~~--~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~--~~-~a~NaLLK~LEEP-----------p~~~~~I 144 (329)
T PRK08058 82 LV-AP--DGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM--TA-SAANSLLKFLEEP-----------SGGTTAI 144 (329)
T ss_pred Ee-cc--ccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh--CH-HHHHHHHHHhcCC-----------CCCceEE
Confidence 00 01 1111 123 34455543 35789999999999 99 9999999999761 2688899
Q ss_pred eeCCC
Q 003769 728 FSCDS 732 (796)
Q Consensus 728 lTsn~ 732 (796)
|+|+.
T Consensus 145 l~t~~ 149 (329)
T PRK08058 145 LLTEN 149 (329)
T ss_pred EEeCC
Confidence 98763
No 172
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.8e-05 Score=87.32 Aligned_cols=134 Identities=10% Similarity=0.059 Sum_probs=85.1
Q ss_pred CceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEcch
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLGDL 287 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfIDEl 287 (796)
+|++++||||+|||.+++.||++ .| ...--+..+. ++..-.+---++.+||+-.+.. .++.+|||||.
T Consensus 385 RNilfyGPPGTGKTm~ArelAr~--SG--------lDYA~mTGGD-VAPlG~qaVTkiH~lFDWakkS-~rGLllFIDEA 452 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFARELARH--SG--------LDYAIMTGGD-VAPLGAQAVTKIHKLFDWAKKS-RRGLLLFIDEA 452 (630)
T ss_pred hheeeeCCCCCCchHHHHHHHhh--cC--------CceehhcCCC-ccccchHHHHHHHHHHHHHhhc-ccceEEEehhh
Confidence 69999999999999999999986 22 1111111121 1112224446799999999986 78999999999
Q ss_pred hhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHh-hhcCCCCcEEEEEecChHHHHHhhhcCccccccccceecccC
Q 003769 288 KWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLV-FEIGESERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTIP 366 (796)
Q Consensus 288 h~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~-~~~~~~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp 366 (796)
+.++-.|.. .. ...+...+ |.+|| ..-+.+.+|.++-||+..+ .-|.|...|++ +.|..|
T Consensus 453 DAFLceRnk-----ty-----mSEaqRsa---LNAlLfRTGdqSrdivLvlAtNrpg-----dlDsAV~DRid-e~veFp 513 (630)
T KOG0742|consen 453 DAFLCERNK-----TY-----MSEAQRSA---LNALLFRTGDQSRDIVLVLATNRPG-----DLDSAVNDRID-EVVEFP 513 (630)
T ss_pred HHHHHHhch-----hh-----hcHHHHHH---HHHHHHHhcccccceEEEeccCCcc-----chhHHHHhhhh-heeecC
Confidence 998876531 11 11122222 66777 2222356688888887432 35677777775 455556
Q ss_pred CCCccc
Q 003769 367 VGSLSL 372 (796)
Q Consensus 367 ~~~l~~ 372 (796)
-|+-.+
T Consensus 514 LPGeEE 519 (630)
T KOG0742|consen 514 LPGEEE 519 (630)
T ss_pred CCChHH
Confidence 665443
No 173
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.06 E-value=1.3e-05 Score=96.32 Aligned_cols=138 Identities=15% Similarity=0.190 Sum_probs=93.9
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDV 660 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~ 660 (796)
++|++.++..+.+.+.+. .+...++|+.|++| +||+.+|++|-....... ..|+.+|++... ++.-.+.+.|+.
T Consensus 327 l~g~s~~~~~~~~~~~~~--a~~~~pvli~Ge~G--tGK~~~A~~ih~~s~r~~-~pfv~vnc~~~~-~~~~~~elfg~~ 400 (638)
T PRK11388 327 MPQDSPQMRRLIHFGRQA--AKSSFPVLLCGEEG--VGKALLAQAIHNESERAA-GPYIAVNCQLYP-DEALAEEFLGSD 400 (638)
T ss_pred eEECCHHHHHHHHHHHHH--hCcCCCEEEECCCC--cCHHHHHHHHHHhCCccC-CCeEEEECCCCC-hHHHHHHhcCCC
Confidence 678888887776666544 33455789999999 999999999999887666 789999998663 221111222221
Q ss_pred -CCCCCCchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCc-eecCCcEEEEeeCCC
Q 003769 661 -ELGCCSYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGE-IVPLKDSIIIFSCDS 732 (796)
Q Consensus 661 -~~~~~~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~-~v~~~n~IiilTsn~ 732 (796)
+....+..+.+ ..-...+++|||||.. .+ ++|..|++++++|.++--.|. .+. -|+-||.||+.
T Consensus 401 ~~~~~~~~~g~~----~~a~~GtL~ldei~~l--~~-~~Q~~Ll~~l~~~~~~~~~~~~~~~-~~~riI~~t~~ 466 (638)
T PRK11388 401 RTDSENGRLSKF----ELAHGGTLFLEKVEYL--SP-ELQSALLQVLKTGVITRLDSRRLIP-VDVRVIATTTA 466 (638)
T ss_pred CcCccCCCCCce----eECCCCEEEEcChhhC--CH-HHHHHHHHHHhcCcEEeCCCCceEE-eeEEEEEeccC
Confidence 10011111222 2334688999999999 99 999999999999998854432 221 13458888763
No 174
>PRK06526 transposase; Provisional
Probab=98.06 E-value=2.3e-05 Score=83.76 Aligned_cols=75 Identities=12% Similarity=0.107 Sum_probs=49.5
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccch-HHHHHHHHHHHHHHHhccCCCEEEEE
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSK-GEVEQKLVELSCHVKSYMGRGIVLYL 284 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~r-ge~E~rl~~l~~~v~~~~~~~~ILfI 284 (796)
.+.|++|+||||||||+++.+|+..+.+. |.+++......++.... ......+.+.+..+ .+.-+|+|
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~-------g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l----~~~dlLII 165 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQA-------GHRVLFATAAQWVARLAAAHHAGRLQAELVKL----GRYPLLIV 165 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHC-------CCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh----ccCCEEEE
Confidence 67899999999999999999999987643 45666666655554211 11111222223333 23469999
Q ss_pred cchhhhh
Q 003769 285 GDLKWVA 291 (796)
Q Consensus 285 DElh~l~ 291 (796)
||++.+.
T Consensus 166 DD~g~~~ 172 (254)
T PRK06526 166 DEVGYIP 172 (254)
T ss_pred cccccCC
Confidence 9998764
No 175
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=2.7e-05 Score=86.13 Aligned_cols=128 Identities=15% Similarity=0.228 Sum_probs=82.7
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCc-e-EEecCC---CCccccccccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNN-F-TNLSSS---QSRQDDCRTKK 655 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~-~-i~~dms---~~~~~~~~~~k 655 (796)
.|||...-..+.+. .|..-.+||.||.| +||+.+|+.+|+.++... .. . .+=.+. ....+.|.-..
T Consensus 5 yPWl~~~~~~~~~~------~r~~ha~Lf~G~~G--~GK~~~A~~~A~~llC~~-~~~~~~Cg~C~sC~~~~~g~HPD~~ 75 (328)
T PRK05707 5 YPWQQSLWQQLAGR------GRHPHAYLLHGPAG--IGKRALAERLAAALLCEA-PQGGGACGSCKGCQLLRAGSHPDNF 75 (328)
T ss_pred CCCcHHHHHHHHHC------CCcceeeeeECCCC--CCHHHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHhcCCCCCEE
Confidence 59998888887543 55556778999999 999999999999999754 21 0 000000 00011111000
Q ss_pred cCCCCCCC----CCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEE
Q 003769 656 RSRDVELG----CCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIII 727 (796)
Q Consensus 656 ~~~~~~~~----~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~Iii 727 (796)
.. .|... +-+.+..|.+.+...| ++|++||++|+. +. .-.|.|+..+|+= + .+++||
T Consensus 76 ~i-~~~~~~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m--~~-~aaNaLLK~LEEP----------p-~~~~fi 140 (328)
T PRK05707 76 VL-EPEEADKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAM--NR-NAANALLKSLEEP----------S-GDTVLL 140 (328)
T ss_pred EE-eccCCCCCCCHHHHHHHHHHHhhccccCCCeEEEECChhhC--CH-HHHHHHHHHHhCC----------C-CCeEEE
Confidence 00 11111 1123345666666555 789999999999 99 9999999999761 1 578899
Q ss_pred eeCCC
Q 003769 728 FSCDS 732 (796)
Q Consensus 728 lTsn~ 732 (796)
|+|+.
T Consensus 141 L~t~~ 145 (328)
T PRK05707 141 LISHQ 145 (328)
T ss_pred EEECC
Confidence 98864
No 176
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=5.9e-06 Score=88.92 Aligned_cols=78 Identities=15% Similarity=0.204 Sum_probs=62.8
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc-cchHH-HHHHHHHHHHHHHhcc--CCCEE
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN-QSKGE-VEQKLVELSCHVKSYM--GRGIV 281 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a-~~rge-~E~rl~~l~~~v~~~~--~~~~I 281 (796)
.|.|++|+||.|+|||-+++.||+.+ ++.|---|..+|.. .|.|| +|.-|.+|+....-.- ...-|
T Consensus 96 ~KSNILLiGPTGsGKTlLAqTLAk~L----------nVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGI 165 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQTLAKIL----------NVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGI 165 (408)
T ss_pred eeccEEEECCCCCcHHHHHHHHHHHh----------CCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCe
Confidence 69999999999999999999999876 45577788878865 89987 8888888876543100 23569
Q ss_pred EEEcchhhhhhh
Q 003769 282 LYLGDLKWVAEF 293 (796)
Q Consensus 282 LfIDElh~l~~~ 293 (796)
+|||||+.+...
T Consensus 166 IyIDEIDKIark 177 (408)
T COG1219 166 IYIDEIDKIARK 177 (408)
T ss_pred EEEechhhhhcc
Confidence 999999999876
No 177
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.04 E-value=1.6e-05 Score=91.69 Aligned_cols=138 Identities=16% Similarity=0.167 Sum_probs=94.9
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDV 660 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~ 660 (796)
++|...++..+.+.+.+ ..+....+|+.|.+| +||+.+|+.|....+... ..|+.+||+... +....+.+.|..
T Consensus 140 lig~s~~~~~l~~~~~~--~~~~~~~vli~Ge~G--tGK~~lA~~ih~~s~~~~-~~~i~i~c~~~~-~~~~~~~lfg~~ 213 (469)
T PRK10923 140 IIGEAPAMQDVFRIIGR--LSRSSISVLINGESG--TGKELVAHALHRHSPRAK-APFIALNMAAIP-KDLIESELFGHE 213 (469)
T ss_pred ceecCHHHHHHHHHHHH--HhccCCeEEEEeCCC--CcHHHHHHHHHhcCCCCC-CCeEeeeCCCCC-HHHHHHHhcCCC
Confidence 67777777777666643 234456789999999 999999999999988777 889999998662 221111222211
Q ss_pred --CCCCCCc--hhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCC
Q 003769 661 --ELGCCSY--IERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 661 --~~~~~~~--~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn 731 (796)
.|.|..- .+. +.......++|||||.. .+ .+|.-|++++++|.++...|...-.-|+-||+||+
T Consensus 214 ~g~~~~~~~~~~g~----~~~a~~Gtl~l~~i~~l--~~-~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~ 281 (469)
T PRK10923 214 KGAFTGANTIRQGR----FEQADGGTLFLDEIGDM--PL-DVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATH 281 (469)
T ss_pred CCCCCCCCcCCCCC----eeECCCCEEEEeccccC--CH-HHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCC
Confidence 1111110 011 11223456899999999 99 99999999999999987665443345777999886
No 178
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.03 E-value=4.9e-05 Score=83.37 Aligned_cols=96 Identities=13% Similarity=0.135 Sum_probs=57.9
Q ss_pred ChHHHHHHHHHHhh-ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccc-------------
Q 003769 192 DSDDVMSVLNALIN-KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQS------------- 257 (796)
Q Consensus 192 r~~ei~~vi~~L~r-~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~------------- 257 (796)
+++.++++.+.+.+ ...+++|+||||||||++++.+++.+.... .+..++.++...+....
T Consensus 20 ~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 94 (337)
T PRK12402 20 QDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDP-----WENNFTEFNVADFFDQGKKYLVEDPRFAHF 94 (337)
T ss_pred CHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc-----cccceEEechhhhhhcchhhhhcCcchhhh
Confidence 55555555555554 444789999999999999999999875321 12346677765543211
Q ss_pred hHH-------HHHHHHHHHHHHHhcc---CCCEEEEEcchhhhhh
Q 003769 258 KGE-------VEQKLVELSCHVKSYM---GRGIVLYLGDLKWVAE 292 (796)
Q Consensus 258 rge-------~E~rl~~l~~~v~~~~---~~~~ILfIDElh~l~~ 292 (796)
.+. ....++++++...... +..-+|||||+|.+-+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~ 139 (337)
T PRK12402 95 LGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE 139 (337)
T ss_pred hhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH
Confidence 111 1223444444443321 2345999999998754
No 179
>PRK04195 replication factor C large subunit; Provisional
Probab=98.02 E-value=2.6e-05 Score=90.65 Aligned_cols=111 Identities=17% Similarity=0.230 Sum_probs=73.3
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDV 660 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~ 660 (796)
++||++++..+..-+......+|.-.+||.||+| +|||.+|++||+.+ | -.++.++.|++.... .+....+..
T Consensus 16 lvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG--~GKTtla~ala~el-~---~~~ielnasd~r~~~-~i~~~i~~~ 88 (482)
T PRK04195 16 VVGNEKAKEQLREWIESWLKGKPKKALLLYGPPG--VGKTSLAHALANDY-G---WEVIELNASDQRTAD-VIERVAGEA 88 (482)
T ss_pred hcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCC--CCHHHHHHHHHHHc-C---CCEEEEcccccccHH-HHHHHHHHh
Confidence 7899999999988887655555667899999999 99999999999998 3 347888877542111 010000000
Q ss_pred CCCCCCchhhHHHHHHhCCCEEEEEcccccCCC--ChHHHHHHHHHHHHc
Q 003769 661 ELGCCSYIERLGLALNENPHRVFFMEDLDDHKV--DSCYCQKGLKQAIEN 708 (796)
Q Consensus 661 ~~~~~~~~~~L~eavr~~P~~Vvl~deieka~~--~~~~v~~~l~q~~d~ 708 (796)
..+ ..+. .+++.||+|||+|.... +. ..++.|++.+++
T Consensus 89 ----~~~-~sl~----~~~~kvIiIDEaD~L~~~~d~-~~~~aL~~~l~~ 128 (482)
T PRK04195 89 ----ATS-GSLF----GARRKLILLDEVDGIHGNEDR-GGARAILELIKK 128 (482)
T ss_pred ----hcc-Cccc----CCCCeEEEEecCcccccccch-hHHHHHHHHHHc
Confidence 000 0011 14789999999996510 33 456778888874
No 180
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.02 E-value=1.4e-05 Score=89.38 Aligned_cols=127 Identities=17% Similarity=0.199 Sum_probs=83.9
Q ss_pred CCCcchHHHHHHHHHHHhhc----------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCcccc
Q 003769 581 VPWQKEIMPEIARTILECRS----------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDD 650 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs----------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~ 650 (796)
|.|.++.+..|...|...-. ..|.+ +||.||+| +|||.+|+++|..+. ..|+++..++..
T Consensus 124 i~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~g-vLL~GppG--tGKT~lakaia~~l~----~~~~~v~~~~l~--- 193 (364)
T TIGR01242 124 IGGLEEQIREIREAVELPLKHPELFEEVGIEPPKG-VLLYGPPG--TGKTLLAKAVAHETN----ATFIRVVGSELV--- 193 (364)
T ss_pred hCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCce-EEEECCCC--CCHHHHHHHHHHhCC----CCEEecchHHHH---
Confidence 78999999999888854322 23444 67889999 999999999999873 347777654321
Q ss_pred ccccccCCCCCCCCC--CchhhHHHHHHhCCCEEEEEcccccCC---------CChHHHHHHHHHHHHcceEecCCCcee
Q 003769 651 CRTKKRSRDVELGCC--SYIERLGLALNENPHRVFFMEDLDDHK---------VDSCYCQKGLKQAIENGCIALADGEIV 719 (796)
Q Consensus 651 ~~~~k~~~~~~~~~~--~~~~~L~eavr~~P~~Vvl~deieka~---------~~~~~v~~~l~q~~d~G~l~d~~G~~v 719 (796)
.+ |.|. .....+.+..+.+.-+||+|||||... .++ .++..+.+.+..- | | ..
T Consensus 194 ---~~------~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~-~~~~~l~~ll~~l---d--~-~~ 257 (364)
T TIGR01242 194 ---RK------YIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDR-EVQRTLMQLLAEL---D--G-FD 257 (364)
T ss_pred ---HH------hhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccH-HHHHHHHHHHHHh---h--C-CC
Confidence 01 2222 233456666677777899999999741 145 6777777776541 1 1 01
Q ss_pred cCCcEEEEeeCCCC
Q 003769 720 PLKDSIIIFSCDSL 733 (796)
Q Consensus 720 ~~~n~IiilTsn~~ 733 (796)
+..+..||+|||..
T Consensus 258 ~~~~v~vI~ttn~~ 271 (364)
T TIGR01242 258 PRGNVKVIAATNRP 271 (364)
T ss_pred CCCCEEEEEecCCh
Confidence 12477899999854
No 181
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.02 E-value=1.6e-05 Score=95.28 Aligned_cols=126 Identities=17% Similarity=0.201 Sum_probs=78.9
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHc----------C-C----------------
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVF----------G-S---------------- 633 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~f----------g-~---------------- 633 (796)
|+||++++.++. .+-.+...+.+||.|+.| +|||.+|+.|+.++- + .
T Consensus 6 ivGq~~~~~al~----~~av~~~~g~vli~G~~G--tgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~ 79 (633)
T TIGR02442 6 IVGQEDLKLALL----LNAVDPRIGGVLIRGEKG--TAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYR 79 (633)
T ss_pred hcChHHHHHHHH----HHhhCCCCCeEEEEcCCC--CcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhccc
Confidence 899999885543 333343467899999999 999999999999982 1 0
Q ss_pred -----CCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHH------------hCCCEEEEEcccccCCCChH
Q 003769 634 -----HSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALN------------ENPHRVFFMEDLDDHKVDSC 696 (796)
Q Consensus 634 -----~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr------------~~P~~Vvl~deieka~~~~~ 696 (796)
. ..|+.+..+.. +. .+. |. . -+..+++ +-...|++||||++. .+
T Consensus 80 ~~~~~~-~pfv~~p~~~t--~~----~l~------G~--~-d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l--~~- 140 (633)
T TIGR02442 80 PSEQRP-VPFVNLPLGAT--ED----RVV------GS--L-DIERALREGEKAFQPGLLAEAHRGILYIDEVNLL--DD- 140 (633)
T ss_pred ccccCC-CCeeeCCCCCc--HH----HcC------Cc--c-cHHHHhhcCCeeecCcceeecCCCeEEeChhhhC--CH-
Confidence 1 12222221100 00 000 10 0 1122221 223369999999999 99
Q ss_pred HHHHHHHHHHHcceEec-CCCceecC-CcEEEEeeCC
Q 003769 697 YCQKGLKQAIENGCIAL-ADGEIVPL-KDSIIIFSCD 731 (796)
Q Consensus 697 ~v~~~l~q~~d~G~l~d-~~G~~v~~-~n~IiilTsn 731 (796)
.+++.|+++|++|.++- ..|....+ .+.++|.|+|
T Consensus 141 ~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~n 177 (633)
T TIGR02442 141 HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMN 177 (633)
T ss_pred HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecC
Confidence 99999999999996431 23333333 5677888877
No 182
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=2.3e-05 Score=84.53 Aligned_cols=145 Identities=17% Similarity=0.246 Sum_probs=95.7
Q ss_pred HHHHHHHhhcCCCCCCcchHHHHHHHHHHH----hhc--cC-----CCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCC
Q 003769 568 LKVLSDALERKAVVPWQKEIMPEIARTILE----CRS--KK-----EQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSN 636 (796)
Q Consensus 568 L~~l~~~L~~~~~v~gQ~~av~~ia~~i~~----~rs--~~-----~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~ 636 (796)
.+.+...|.+- |+||+.|-..++-+|.- .+. .+ .-.-.|+.|||| .|||-||+.||+.+ .-
T Consensus 52 P~eik~~Ld~Y--VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTG--sGKTlLAqTLAk~L-nV--- 123 (408)
T COG1219 52 PKEIKAHLDEY--VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTG--SGKTLLAQTLAKIL-NV--- 123 (408)
T ss_pred hHHHHHHhhhh--eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCC--CcHHHHHHHHHHHh-CC---
Confidence 35678899999 99999999888877732 232 11 125689999999 99999999999999 32
Q ss_pred ceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCC-------CEEEEEcccccC-----------CCChHHH
Q 003769 637 NFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENP-------HRVFFMEDLDDH-----------KVDSCYC 698 (796)
Q Consensus 637 ~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P-------~~Vvl~deieka-----------~~~~~~v 698 (796)
.|.--|...- +| .||+|-+.-.-|...+..-- .-+|.+|||||- |+.-+.|
T Consensus 124 PFaiADATtL-TE----------AGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGV 192 (408)
T COG1219 124 PFAIADATTL-TE----------AGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGV 192 (408)
T ss_pred Ceeeccccch-hh----------ccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHH
Confidence 2433333211 11 34555442234444444444 457999999984 2233468
Q ss_pred HHHHHHHHHcceEec---CCCceecCCcEEEEeeCCC
Q 003769 699 QKGLKQAIENGCIAL---ADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 699 ~~~l~q~~d~G~l~d---~~G~~v~~~n~IiilTsn~ 732 (796)
|..||.++| |.+.. ..||+=+-.+.|-|=|||.
T Consensus 193 QQALLKiiE-GTvasVPPqGGRKHP~Qe~iqvDT~NI 228 (408)
T COG1219 193 QQALLKIIE-GTVASVPPQGGRKHPQQEFIQVDTSNI 228 (408)
T ss_pred HHHHHHHHc-CceeccCCCCCCCCCccceEEEcccce
Confidence 999999985 66665 4568766666666666665
No 183
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.02 E-value=1.5e-05 Score=88.32 Aligned_cols=139 Identities=12% Similarity=0.121 Sum_probs=80.6
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHc------CCCCCceEEecCC----CCcccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVF------GSHSNNFTNLSSS----QSRQDD 650 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~f------g~~~~~~i~~dms----~~~~~~ 650 (796)
|+||++++..+.-+... ...+-+||.||.| +|||.+||+||.++= |.+ -+++++.+. +.+..+
T Consensus 10 i~Gq~~~~~~l~~~~~~----~~~~~vLl~G~pG--~gKT~lar~la~llP~~~~~e~~~-~~~~~~~~~~~~~~~~~~~ 82 (334)
T PRK13407 10 IVGQEEMKQAMVLTAID----PGIGGVLVFGDRG--TGKSTAVRALAALLPLIKAVEGCP-VNSARPEDCPEWAHVSSTT 82 (334)
T ss_pred hCCHHHHHHHHHHHHhc----cCCCcEEEEcCCC--CCHHHHHHHHHHHCCCcchhcccc-cccCcccCCcccccccCCc
Confidence 78999998877654432 2346799999999 999999999999982 111 122222221 110000
Q ss_pred c----c-ccccCCC--CC-CCCCCchhhHHHH-------HHhCC-----CEEEEEcccccCCCChHHHHHHHHHHHHcce
Q 003769 651 C----R-TKKRSRD--VE-LGCCSYIERLGLA-------LNENP-----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGC 710 (796)
Q Consensus 651 ~----~-~~k~~~~--~~-~~~~~~~~~L~ea-------vr~~P-----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~ 710 (796)
. . ..+.+.. .+ ..|.- -+..+ .+.-| ..|+++|||+.+ .+ .++..|+++|++|.
T Consensus 83 ~~~~~~p~~~~p~~~t~~~l~G~~---d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl--~~-~~q~~Lle~mee~~ 156 (334)
T PRK13407 83 MIERPTPVVDLPLGVTEDRVVGAL---DIERALTRGEKAFEPGLLARANRGYLYIDEVNLL--ED-HIVDLLLDVAQSGE 156 (334)
T ss_pred ccccCCccccCCCCCCcceeecch---hhhhhhhcCCeeecCCceEEcCCCeEEecChHhC--CH-HHHHHHHHHHHcCC
Confidence 0 0 0001100 00 11110 11111 11111 248999999999 99 99999999999998
Q ss_pred Ee-cCCCceecCC-cEEEEeeCCC
Q 003769 711 IA-LADGEIVPLK-DSIIIFSCDS 732 (796)
Q Consensus 711 l~-d~~G~~v~~~-n~IiilTsn~ 732 (796)
++ -..|....+. ..++|.|.|.
T Consensus 157 v~v~r~G~~~~~p~rfiviAt~NP 180 (334)
T PRK13407 157 NVVEREGLSIRHPARFVLVGSGNP 180 (334)
T ss_pred eEEEECCeEEecCCCEEEEecCCc
Confidence 54 2244444443 5677777774
No 184
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.01 E-value=2.5e-05 Score=87.42 Aligned_cols=137 Identities=15% Similarity=0.146 Sum_probs=78.8
Q ss_pred HHHHHHHHHhh--ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeeccc---------------ccc-c
Q 003769 195 DVMSVLNALIN--KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFS---------------FRN-Q 256 (796)
Q Consensus 195 ei~~vi~~L~r--~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~---------------l~a-~ 256 (796)
--.|+|+.|+- +....+|+||||||||++++.|+..+.... + +..++.+-.+. +++ .
T Consensus 155 ~~~rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~nh-F----Dv~~~VvLIgER~~EVtdiqrsIlg~vv~st 229 (416)
T PRK09376 155 LSTRIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTNH-P----EVHLIVLLIDERPEEVTDMQRSVKGEVVAST 229 (416)
T ss_pred cceeeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhhc-C----CeEEEEEEeCCchhHHHHHHHHhcCcEEEEC
Confidence 34578888887 788899999999999999999999887641 1 23322221111 122 2
Q ss_pred chHHHHHHHH---HHHHHHHhc--cCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhc---C
Q 003769 257 SKGEVEQKLV---ELSCHVKSY--MGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEI---G 328 (796)
Q Consensus 257 ~rge~E~rl~---~l~~~v~~~--~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~---~ 328 (796)
+-+..+.+++ .+++.++.. .+..++|||||||.++.+.... +.+.|.--.+.|++ .+.-. +|.+.... .
T Consensus 230 ~d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~arAqrev-~~~sG~~~sgG~~~-~~~~~-~~r~f~~Arn~e 306 (416)
T PRK09376 230 FDEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTV-VPSSGKVLSGGVDA-NALHR-PKRFFGAARNIE 306 (416)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHHHHHHHHhh-hhccCCCCCCCCCh-hHhhh-hHHHHHhhcCCC
Confidence 2333334444 233333221 1779999999999999886432 11111101123433 22222 66776322 2
Q ss_pred CCCcEEEEEec
Q 003769 329 ESERVWIMGIA 339 (796)
Q Consensus 329 ~~G~l~~IGat 339 (796)
+.|.|+.|++.
T Consensus 307 ~~GSlT~i~T~ 317 (416)
T PRK09376 307 EGGSLTIIATA 317 (416)
T ss_pred CCcceEEEEEE
Confidence 46888888873
No 185
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.01 E-value=5.2e-05 Score=91.84 Aligned_cols=138 Identities=15% Similarity=0.173 Sum_probs=94.6
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCC-
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD- 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~- 659 (796)
++|+..++..+.+.+.+. .+....+|+.|++| +|||.+|++|...-.... ..|+.+|++... +......+-|.
T Consensus 378 liG~S~~~~~~~~~~~~~--a~~~~pVLI~GE~G--TGK~~lA~~ih~~s~r~~-~~~v~i~c~~~~-~~~~~~~lfg~~ 451 (686)
T PRK15429 378 IIGRSEAMYSVLKQVEMV--AQSDSTVLILGETG--TGKELIARAIHNLSGRNN-RRMVKMNCAAMP-AGLLESDLFGHE 451 (686)
T ss_pred eeecCHHHHHHHHHHHHH--hCCCCCEEEECCCC--cCHHHHHHHHHHhcCCCC-CCeEEEecccCC-hhHhhhhhcCcc
Confidence 789999888887777654 33445789999999 999999999998776555 789999998542 11100111110
Q ss_pred -CCCCCCC--chhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCC
Q 003769 660 -VELGCCS--YIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 660 -~~~~~~~--~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn 731 (796)
..+.|.. ..+.+ ...-..+++||||+.. .+ ++|.-|++++++|.++-..|...--.|+-||.||+
T Consensus 452 ~~~~~g~~~~~~g~l----e~a~~GtL~Ldei~~L--~~-~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~ 519 (686)
T PRK15429 452 RGAFTGASAQRIGRF----ELADKSSLFLDEVGDM--PL-ELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATN 519 (686)
T ss_pred cccccccccchhhHH----HhcCCCeEEEechhhC--CH-HHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCC
Confidence 0122211 12233 2233589999999999 99 99999999999998876444333334666888876
No 186
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=98.00 E-value=3.2e-05 Score=80.14 Aligned_cols=132 Identities=13% Similarity=0.127 Sum_probs=92.3
Q ss_pred HHHHHhh-ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc-----cchHHHHHH--------
Q 003769 199 VLNALIN-KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN-----QSKGEVEQK-------- 264 (796)
Q Consensus 199 vi~~L~r-~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a-----~~rge~E~r-------- 264 (796)
++..|.. ..-|.+++||||||||++.+.+|+-+..|-- ....+++.-+|-.+=++ ...=++-.|
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~--~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cp 205 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGIN--QFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCP 205 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhcccc--ccCCceEEEEeccchhhccccCCchhhhhhhhhhcccch
Confidence 6667777 8889999999999999999999998877631 34467888888654433 122223333
Q ss_pred -HHHHHHHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHH
Q 003769 265 -LVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQT 343 (796)
Q Consensus 265 -l~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~e 343 (796)
-.-++..+++ ..|-|+++|||.+--++ .++ +.++ ++| +.+|+++.-..
T Consensus 206 k~~gmmmaIrs--m~PEViIvDEIGt~~d~--------------------~A~---~ta~-----~~G-Vkli~TaHG~~ 254 (308)
T COG3854 206 KAEGMMMAIRS--MSPEVIIVDEIGTEEDA--------------------LAI---LTAL-----HAG-VKLITTAHGNG 254 (308)
T ss_pred HHHHHHHHHHh--cCCcEEEEeccccHHHH--------------------HHH---HHHH-----hcC-cEEEEeecccc
Confidence 3456677776 57889999999654433 111 2233 256 99999987666
Q ss_pred HHHhhhcCccccccccceecc
Q 003769 344 YTRCKAGHPSLENMWKLHPFT 364 (796)
Q Consensus 344 y~k~~~~dpaLerrf~lq~V~ 364 (796)
.... .+.|+|.+.|+.|.+.
T Consensus 255 iedl-~krp~lkdlv~i~af~ 274 (308)
T COG3854 255 IEDL-IKRPTLKDLVEIQAFD 274 (308)
T ss_pred HHHh-hcChhHHHHHhhhHHH
Confidence 6554 6899999988777665
No 187
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.98 E-value=3.5e-05 Score=85.61 Aligned_cols=49 Identities=12% Similarity=0.179 Sum_probs=41.8
Q ss_pred CCCCCCcchHHHHHHHHHHHhhc--cCCCeEEEEecCCCCCchHHHHHHHHHHHH
Q 003769 578 KAVVPWQKEIMPEIARTILECRS--KKEQTWLLFLGADDHNHGKEKIAREIAKVV 630 (796)
Q Consensus 578 ~~~v~gQ~~av~~ia~~i~~~rs--~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~ 630 (796)
. |+||++++..+++.+..... ..+.-.++|.||+| +|||++|++||+.+
T Consensus 52 ~--~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPG--sGKStla~~La~~l 102 (361)
T smart00763 52 D--FFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVG--GGKSSLVECLKRGL 102 (361)
T ss_pred h--ccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCC--CCHHHHHHHHHHHH
Confidence 7 99999999999998876654 22345689999999 99999999999887
No 188
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.98 E-value=3.6e-05 Score=85.09 Aligned_cols=138 Identities=14% Similarity=0.186 Sum_probs=93.7
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCC-
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD- 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~- 659 (796)
++|+..++..+.+.+.+.- +....+|+.|.+| +||+.+|+++-..-.... ..|+.+|++... +..-...+-|.
T Consensus 8 liG~S~~~~~~~~~i~~~a--~~~~pVlI~GE~G--tGK~~lA~~iH~~s~r~~-~pfv~v~c~~~~-~~~~~~~lfg~~ 81 (326)
T PRK11608 8 LLGEANSFLEVLEQVSRLA--PLDKPVLIIGERG--TGKELIASRLHYLSSRWQ-GPFISLNCAALN-ENLLDSELFGHE 81 (326)
T ss_pred cEECCHHHHHHHHHHHHHh--CCCCCEEEECCCC--CcHHHHHHHHHHhCCccC-CCeEEEeCCCCC-HHHHHHHHcccc
Confidence 7899999988888887663 3346788999999 999999999987665445 789999999652 22100111111
Q ss_pred C-CCCCCC--chhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCC-ceecCCcEEEEeeCCC
Q 003769 660 V-ELGCCS--YIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADG-EIVPLKDSIIIFSCDS 732 (796)
Q Consensus 660 ~-~~~~~~--~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G-~~v~~~n~IiilTsn~ 732 (796)
. .+.|.. ..+.| ..---.+++|||||.. .+ .+|.-|++++++|.++-..| +.+. .|+-||.||+.
T Consensus 82 ~~~~~g~~~~~~g~l----~~a~gGtL~l~~i~~L--~~-~~Q~~L~~~l~~~~~~~~g~~~~~~-~~~RiI~~s~~ 150 (326)
T PRK11608 82 AGAFTGAQKRHPGRF----ERADGGTLFLDELATA--PM-LVQEKLLRVIEYGELERVGGSQPLQ-VNVRLVCATNA 150 (326)
T ss_pred ccccCCcccccCCch----hccCCCeEEeCChhhC--CH-HHHHHHHHHHhcCcEEeCCCCceee-ccEEEEEeCch
Confidence 0 111211 11223 2233568999999999 99 99999999999999774333 3333 35678887753
No 189
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=2.1e-05 Score=87.52 Aligned_cols=78 Identities=13% Similarity=0.175 Sum_probs=63.9
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc-cchHH-HHHHHHHHHHHHHhcc--CCCEE
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN-QSKGE-VEQKLVELSCHVKSYM--GRGIV 281 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a-~~rge-~E~rl~~l~~~v~~~~--~~~~I 281 (796)
.|.|++|+||+|+|||-+++.||+-+ ++.|.-.|...|.. .|.|| +|--|.+|+.++.-.- ...-|
T Consensus 225 eKSNvLllGPtGsGKTllaqTLAr~l----------dVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGI 294 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQTLARVL----------DVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGI 294 (564)
T ss_pred ecccEEEECCCCCchhHHHHHHHHHh----------CCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCe
Confidence 79999999999999999999999754 46688888888865 89987 8888888887764210 24579
Q ss_pred EEEcchhhhhhh
Q 003769 282 LYLGDLKWVAEF 293 (796)
Q Consensus 282 LfIDElh~l~~~ 293 (796)
+||||++.|...
T Consensus 295 VflDEvDKi~~~ 306 (564)
T KOG0745|consen 295 VFLDEVDKITKK 306 (564)
T ss_pred EEEehhhhhccc
Confidence 999999999854
No 190
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.97 E-value=5e-05 Score=90.72 Aligned_cols=62 Identities=8% Similarity=0.077 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHhh-ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccc
Q 003769 192 DSDDVMSVLNALIN-KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSF 253 (796)
Q Consensus 192 r~~ei~~vi~~L~r-~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l 253 (796)
++..+.++++.+.. ...+++|+||||||||++++.+............-.+..|+.++...+
T Consensus 159 qs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 159 QERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred CcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence 66777777777776 777899999999999999999987543211100112457888886544
No 191
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.97 E-value=2.5e-05 Score=91.11 Aligned_cols=128 Identities=18% Similarity=0.182 Sum_probs=78.0
Q ss_pred CCCcchHHHHHHHHHHHhhc--------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCcccccc
Q 003769 581 VPWQKEIMPEIARTILECRS--------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCR 652 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs--------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~ 652 (796)
|+|++++...+-..+...+. .++..-+||.||+| +|||.+||+||... + -.|+.++.+++. +..
T Consensus 57 i~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppG--tGKT~la~alA~~~-~---~~~~~i~~~~~~-~~~- 128 (495)
T TIGR01241 57 VAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPG--TGKTLLAKAVAGEA-G---VPFFSISGSDFV-EMF- 128 (495)
T ss_pred hCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCC--CCHHHHHHHHHHHc-C---CCeeeccHHHHH-HHH-
Confidence 67777776666655543322 23334588999999 99999999999886 3 458888776441 110
Q ss_pred ccccCCCCCCCCCCchhhHHHHHHhCCCEEEEEcccccCC---------CCh--HHHHHHHHHHHHcceEecCCCceecC
Q 003769 653 TKKRSRDVELGCCSYIERLGLALNENPHRVFFMEDLDDHK---------VDS--CYCQKGLKQAIENGCIALADGEIVPL 721 (796)
Q Consensus 653 ~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vvl~deieka~---------~~~--~~v~~~l~q~~d~G~l~d~~G~~v~~ 721 (796)
.+ .+...+..+.+..+.+.-+||||||||... .+. ..+.+-|+.-+|. +.+ -
T Consensus 129 -------~g-~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~--~~~-------~ 191 (495)
T TIGR01241 129 -------VG-VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG--FGT-------N 191 (495)
T ss_pred -------hc-ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcc--ccC-------C
Confidence 10 011233466667777777899999998631 021 0244445555532 111 1
Q ss_pred CcEEEEeeCCCC
Q 003769 722 KDSIIIFSCDSL 733 (796)
Q Consensus 722 ~n~IiilTsn~~ 733 (796)
.+.+||.|||-.
T Consensus 192 ~~v~vI~aTn~~ 203 (495)
T TIGR01241 192 TGVIVIAATNRP 203 (495)
T ss_pred CCeEEEEecCCh
Confidence 346888888864
No 192
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.97 E-value=2.5e-05 Score=90.01 Aligned_cols=144 Identities=15% Similarity=0.147 Sum_probs=83.0
Q ss_pred HHHHHHHHhh----ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHH-HHHHHHH
Q 003769 196 VMSVLNALIN----KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQ-KLVELSC 270 (796)
Q Consensus 196 i~~vi~~L~r----~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~-rl~~l~~ 270 (796)
....+..++. ..+.++|+|+||+|||+++++++..+.+.. | +.+++.++...+...+...+.. .+.++.+
T Consensus 133 a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~-~----~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~ 207 (450)
T PRK00149 133 AHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKN-P----NAKVVYVTSEKFTNDFVNALRNNTMEEFKE 207 (450)
T ss_pred HHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhC-C----CCeEEEEEHHHHHHHHHHHHHcCcHHHHHH
Confidence 4444444443 124567889999999999999999987532 2 5778888877765543333321 2233444
Q ss_pred HHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecCh-HHHHHhhh
Q 003769 271 HVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASF-QTYTRCKA 349 (796)
Q Consensus 271 ~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~-~ey~k~~~ 349 (796)
.++. ..+|+|||+|.+.+.. .. ..+.... +..+. ++|...+|+++.+ .+...
T Consensus 208 ~~~~----~dlLiiDDi~~l~~~~-------~~--------~~~l~~~-~n~l~----~~~~~iiits~~~p~~l~~--- 260 (450)
T PRK00149 208 KYRS----VDVLLIDDIQFLAGKE-------RT--------QEEFFHT-FNALH----EAGKQIVLTSDRPPKELPG--- 260 (450)
T ss_pred HHhc----CCEEEEehhhhhcCCH-------HH--------HHHHHHH-HHHHH----HCCCcEEEECCCCHHHHHH---
Confidence 4443 3599999999986541 00 0111111 22343 3566666666543 33322
Q ss_pred cCccccccccc-eecccCCCCcc
Q 003769 350 GHPSLENMWKL-HPFTIPVGSLS 371 (796)
Q Consensus 350 ~dpaLerrf~l-q~V~vp~~~l~ 371 (796)
.+|.|..||.- ..|.++.|+..
T Consensus 261 l~~~l~SRl~~gl~v~i~~pd~~ 283 (450)
T PRK00149 261 LEERLRSRFEWGLTVDIEPPDLE 283 (450)
T ss_pred HHHHHHhHhcCCeeEEecCCCHH
Confidence 45788888742 34555444433
No 193
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=6.5e-05 Score=91.35 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=67.2
Q ss_pred HHHHHhh-ccCce-EEEcCCcccHHHHHHHHHHHHHcCCC----CCC----------CCCceEEEeecccccccchHHHH
Q 003769 199 VLNALIN-KKRNT-VIVGGNLAAIEGVIRGIIDQFERGQV----PGD----------LRYAQFISLPLFSFRNQSKGEVE 262 (796)
Q Consensus 199 vi~~L~r-~k~n~-vLvGepGvGKTaiv~~la~ri~~~~v----p~~----------L~~~~v~~l~~~~l~a~~rge~E 262 (796)
+...+.. +-.+. ||+||||||||++++.+|+.+..... |-. .....++.+|..+- ....+
T Consensus 28 LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~--~kVDd-- 103 (944)
T PRK14949 28 LTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASR--TKVDD-- 103 (944)
T ss_pred HHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccc--cCHHH--
Confidence 3334444 55565 78999999999999999999864321 100 11223444543221 11222
Q ss_pred HHHHHHHHHHHhc--cCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCC-CCcEEEEEec
Q 003769 263 QKLVELSCHVKSY--MGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGE-SERVWIMGIA 339 (796)
Q Consensus 263 ~rl~~l~~~v~~~--~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~-~G~l~~IGat 339 (796)
+++|++.+... .++.-|+||||+|.|-.. +.|. |.+.+ .+ .+.+++|++|
T Consensus 104 --IReLie~v~~~P~~gk~KViIIDEAh~LT~e---------------------AqNA-LLKtL---EEPP~~vrFILaT 156 (944)
T PRK14949 104 --TRELLDNVQYRPSRGRFKVYLIDEVHMLSRS---------------------SFNA-LLKTL---EEPPEHVKFLLAT 156 (944)
T ss_pred --HHHHHHHHHhhhhcCCcEEEEEechHhcCHH---------------------HHHH-HHHHH---hccCCCeEEEEEC
Confidence 34555555421 145689999999999643 3333 33333 22 5789999998
Q ss_pred ChHHH
Q 003769 340 SFQTY 344 (796)
Q Consensus 340 T~~ey 344 (796)
|....
T Consensus 157 Te~~k 161 (944)
T PRK14949 157 TDPQK 161 (944)
T ss_pred CCchh
Confidence 86543
No 194
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=97.96 E-value=2.9e-05 Score=86.10 Aligned_cols=139 Identities=12% Similarity=0.139 Sum_probs=80.2
Q ss_pred CCCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHH----------cCCC-C-CceEEecCC---
Q 003769 580 VVPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVV----------FGSH-S-NNFTNLSSS--- 644 (796)
Q Consensus 580 ~v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~----------fg~~-~-~~~i~~dms--- 644 (796)
+|+||++++.++.-++. ....+++++.|+.| +|||.++++|+.++ |+.. . ..+++.++.
T Consensus 5 ~ivgq~~~~~al~~~~~----~~~~g~vli~G~~G--~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 78 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVI----DPKIGGVMVMGDRG--TGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRV 78 (337)
T ss_pred ccccHHHHHHHHHHHhc----CCCCCeEEEEcCCC--CCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhh
Confidence 58999999877655554 33478999999999 99999999999998 3310 0 111111111
Q ss_pred CCcccccccc----ccCCCCC------CCCCCchhhHHHHHH------------hCCCEEEEEcccccCCCChHHHHHHH
Q 003769 645 QSRQDDCRTK----KRSRDVE------LGCCSYIERLGLALN------------ENPHRVFFMEDLDDHKVDSCYCQKGL 702 (796)
Q Consensus 645 ~~~~~~~~~~----k~~~~~~------~~~~~~~~~L~eavr------------~~P~~Vvl~deieka~~~~~~v~~~l 702 (796)
++. +..+.. +.+..|. ..|.- -+..+++ +--..|+++|||+.+ .+ .+|..|
T Consensus 79 ~~~-~~~~~~~~~~~~~~lP~~~t~d~l~G~~---d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L--~~-~~Q~~L 151 (337)
T TIGR02030 79 DSQ-EPLSIIKKPVPVVDLPLGATEDRVCGTL---DIERALTEGVKAFEPGLLARANRGILYIDEVNLL--ED-HLVDVL 151 (337)
T ss_pred hcc-cccccccCCCCcCCCCCCCcccceecch---hHhhHhhcCCEEeecCcceeccCCEEEecChHhC--CH-HHHHHH
Confidence 000 000000 0011111 11110 1222221 111259999999999 99 999999
Q ss_pred HHHHHcceEe-cCCCceecCC-cEEEEeeCC
Q 003769 703 KQAIENGCIA-LADGEIVPLK-DSIIIFSCD 731 (796)
Q Consensus 703 ~q~~d~G~l~-d~~G~~v~~~-n~IiilTsn 731 (796)
++++++|.++ -..|....+. +.|+|.|.|
T Consensus 152 l~~l~~g~~~v~r~G~~~~~~~r~iviat~n 182 (337)
T TIGR02030 152 LDVAASGWNVVEREGISIRHPARFVLVGSGN 182 (337)
T ss_pred HHHHHhCCeEEEECCEEEEcCCCEEEEeccc
Confidence 9999999633 1234444443 456666665
No 195
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.96 E-value=3.8e-05 Score=90.11 Aligned_cols=138 Identities=12% Similarity=0.083 Sum_probs=91.8
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCC-
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD- 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~- 659 (796)
++|+..++..+.+.+.+. .+....+|+.|.+| +||+.+|+++-..-.... ..|+.+|++... +..--+-+.|+
T Consensus 206 ~ig~s~~~~~~~~~~~~~--A~~~~pvlI~GE~G--tGK~~lA~aiH~~s~r~~-~pfv~inca~~~-~~~~e~elFG~~ 279 (520)
T PRK10820 206 IVAVSPKMRQVVEQARKL--AMLDAPLLITGDTG--TGKDLLAYACHLRSPRGK-KPFLALNCASIP-DDVVESELFGHA 279 (520)
T ss_pred eeECCHHHHHHHHHHHHH--hCCCCCEEEECCCC--ccHHHHHHHHHHhCCCCC-CCeEEeccccCC-HHHHHHHhcCCC
Confidence 889998888777766543 33345689999999 999999999987766666 789999998663 22111111221
Q ss_pred CC-CCCC--CchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCC
Q 003769 660 VE-LGCC--SYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 660 ~~-~~~~--~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn 731 (796)
++ |.|. +..|.| ..---..++||||+.. .+ .+|.-|++.+++|.++-..+...---|+-||.||+
T Consensus 280 ~~~~~~~~~~~~g~~----e~a~~GtL~LdeI~~L--~~-~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~ 347 (520)
T PRK10820 280 PGAYPNALEGKKGFF----EQANGGSVLLDEIGEM--SP-RMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQ 347 (520)
T ss_pred CCCcCCcccCCCChh----hhcCCCEEEEeChhhC--CH-HHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecC
Confidence 11 1111 001111 1223468899999999 99 99999999999998876443322223556777765
No 196
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.96 E-value=2.8e-05 Score=95.07 Aligned_cols=118 Identities=10% Similarity=0.084 Sum_probs=73.1
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc---------cchHHHHHHHHHHHHHHHhccC
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN---------QSKGEVEQKLVELSCHVKSYMG 277 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a---------~~rge~E~rl~~l~~~v~~~~~ 277 (796)
...++|+||||+|||++++.+|..+ +..++.++++.+.. .|.|....++...+..+..
T Consensus 349 g~~i~l~GppG~GKTtl~~~ia~~l----------~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~--- 415 (784)
T PRK10787 349 GPILCLVGPPGVGKTSLGQSIAKAT----------GRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGV--- 415 (784)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCC---
Confidence 4467899999999999999999865 34577777665432 2445555555544444332
Q ss_pred CCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhh----------cC---CCCcEEEEEecChHHH
Q 003769 278 RGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFE----------IG---ESERVWIMGIASFQTY 344 (796)
Q Consensus 278 ~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~----------~~---~~G~l~~IGatT~~ey 344 (796)
.+.|+||||+|.+.... .| ++.++ |-.++.. ++ .-+.+.+|+||++
T Consensus 416 ~~~villDEidk~~~~~-------~g-------~~~~a----Llevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~--- 474 (784)
T PRK10787 416 KNPLFLLDEIDKMSSDM-------RG-------DPASA----LLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNS--- 474 (784)
T ss_pred CCCEEEEEChhhccccc-------CC-------CHHHH----HHHHhccccEEEEecccccccccCCceEEEEcCCC---
Confidence 24578999999886531 11 13333 3333310 00 0267888886643
Q ss_pred HHhhhcCccccccccce
Q 003769 345 TRCKAGHPSLENMWKLH 361 (796)
Q Consensus 345 ~k~~~~dpaLerrf~lq 361 (796)
+..+|+|-.|+++.
T Consensus 475 ---~~i~~aLl~R~~ii 488 (784)
T PRK10787 475 ---MNIPAPLLDRMEVI 488 (784)
T ss_pred ---CCCCHHHhcceeee
Confidence 25899999998653
No 197
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.95 E-value=3.8e-05 Score=87.08 Aligned_cols=128 Identities=15% Similarity=0.132 Sum_probs=81.2
Q ss_pred CCCcchHHHHHHHHHHHhhc---------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccc
Q 003769 581 VPWQKEIMPEIARTILECRS---------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDC 651 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs---------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~ 651 (796)
|.|.+..+..|-.+|..--. -.|..-+||.||+| +|||.+|+++|..+. ..|+++..+++.
T Consensus 147 igGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppG--TGKT~LAkalA~~l~----~~fi~i~~s~l~---- 216 (398)
T PTZ00454 147 IGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPG--TGKTMLAKAVAHHTT----ATFIRVVGSEFV---- 216 (398)
T ss_pred cCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCC--CCHHHHHHHHHHhcC----CCEEEEehHHHH----
Confidence 67888888888887753211 12334466889999 999999999999873 448888665331
Q ss_pred cccccCCCCCCCCC--CchhhHHHHHHhCCCEEEEEcccccC---------CCChHHHHHHHHHHHHcceEecCCCceec
Q 003769 652 RTKKRSRDVELGCC--SYIERLGLALNENPHRVFFMEDLDDH---------KVDSCYCQKGLKQAIENGCIALADGEIVP 720 (796)
Q Consensus 652 ~~~k~~~~~~~~~~--~~~~~L~eavr~~P~~Vvl~deieka---------~~~~~~v~~~l~q~~d~G~l~d~~G~~v~ 720 (796)
.+ |.|. ..+..+....+.+--+||||||||.. +.+. .++..+.+.+..- |+.. .
T Consensus 217 --~k------~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~-~~~r~l~~LL~~l---d~~~---~ 281 (398)
T PTZ00454 217 --QK------YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADR-EVQRILLELLNQM---DGFD---Q 281 (398)
T ss_pred --HH------hcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccH-HHHHHHHHHHHHh---hccC---C
Confidence 11 2222 22345666667777799999999952 1244 5666666665431 1110 1
Q ss_pred CCcEEEEeeCCCC
Q 003769 721 LKDSIIIFSCDSL 733 (796)
Q Consensus 721 ~~n~IiilTsn~~ 733 (796)
-.+.+||+|||..
T Consensus 282 ~~~v~VI~aTN~~ 294 (398)
T PTZ00454 282 TTNVKVIMATNRA 294 (398)
T ss_pred CCCEEEEEecCCc
Confidence 2467899999853
No 198
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.94 E-value=5.5e-05 Score=71.16 Aligned_cols=107 Identities=15% Similarity=0.145 Sum_probs=62.7
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc----------------cchHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN----------------QSKGEVEQKLVELS 269 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a----------------~~rge~E~rl~~l~ 269 (796)
+++.++++||||+|||++++.+++.......+.. ...++.+++..... ......++-.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKN--HPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC--CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccC--CCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHH
Confidence 4677889999999999999999998753100000 35677776533221 11123444555666
Q ss_pred HHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecCh
Q 003769 270 CHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASF 341 (796)
Q Consensus 270 ~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~ 341 (796)
+.++. .+..+|+|||+|.+. .. + .++. |+.|+ .+..+++|-++++
T Consensus 81 ~~l~~--~~~~~lviDe~~~l~-~~-------~---------~l~~----l~~l~----~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDR--RRVVLLVIDEADHLF-SD-------E---------FLEF----LRSLL----NESNIKVVLVGTP 125 (131)
T ss_dssp HHHHH--CTEEEEEEETTHHHH-TH-------H---------HHHH----HHHHT----CSCBEEEEEEESS
T ss_pred HHHHh--cCCeEEEEeChHhcC-CH-------H---------HHHH----HHHHH----hCCCCeEEEEECh
Confidence 66665 344799999999985 21 0 2222 66776 2556777766665
No 199
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.94 E-value=4.8e-05 Score=83.79 Aligned_cols=132 Identities=15% Similarity=0.193 Sum_probs=87.1
Q ss_pred CCCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCC---Ccccccccccc
Q 003769 580 VVPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQ---SRQDDCRTKKR 656 (796)
Q Consensus 580 ~v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~---~~~~~~~~~k~ 656 (796)
..|||..+...+.+++.+-|- .-.+||.||.| +||+.+|+++|+.++... ..-.. ++.. ...+.|.-...
T Consensus 5 ~yPW~~~~~~~l~~~~~~~rl---~HA~Lf~Gp~G--~GK~~lA~~lA~~LlC~~-~~~~~-~c~~c~~~~~g~HPD~~~ 77 (319)
T PRK08769 5 FSPWQQRAYDQTVAALDAGRL---GHGLLICGPEG--LGKRAVALALAEHVLASG-PDPAA-AQRTRQLIAAGTHPDLQL 77 (319)
T ss_pred ccccHHHHHHHHHHHHHcCCc---ceeEeeECCCC--CCHHHHHHHHHHHHhCCC-CCCCC-cchHHHHHhcCCCCCEEE
Confidence 369999999998888764443 34677999999 999999999999999864 21000 0000 00111211111
Q ss_pred CC-CCCCCCC--------CchhhHHHHHHhCCC----EEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCc
Q 003769 657 SR-DVELGCC--------SYIERLGLALNENPH----RVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKD 723 (796)
Q Consensus 657 ~~-~~~~~~~--------~~~~~L~eavr~~P~----~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n 723 (796)
+. .|...|. +.+-.+.+.+...|+ +||+||+.|+. .. .-.|.||..+|+ .=.+
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m--~~-~AaNaLLKtLEE-----------Pp~~ 143 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI--NR-AACNALLKTLEE-----------PSPG 143 (319)
T ss_pred EecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhh--CH-HHHHHHHHHhhC-----------CCCC
Confidence 10 1221111 122356666666665 89999999999 99 999999999975 2368
Q ss_pred EEEEeeCCC
Q 003769 724 SIIIFSCDS 732 (796)
Q Consensus 724 ~IiilTsn~ 732 (796)
++|||+|+.
T Consensus 144 ~~fiL~~~~ 152 (319)
T PRK08769 144 RYLWLISAQ 152 (319)
T ss_pred CeEEEEECC
Confidence 889998864
No 200
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.93 E-value=9.5e-06 Score=86.61 Aligned_cols=72 Identities=17% Similarity=0.232 Sum_probs=55.1
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccch-----HHHHHHHHHHHHHHHhccCCCE
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSK-----GEVEQKLVELSCHVKSYMGRGI 280 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~r-----ge~E~rl~~l~~~v~~~~~~~~ 280 (796)
++.|++|+|+||||||.++-+++.++.+. |.+++.+....|+...+ |..+.+|. +.++.. -
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~-------g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~---~~l~~~----d 169 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKA-------GISVLFITAPDLLSKLKAAFDEGRLEEKLL---RELKKV----D 169 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHc-------CCeEEEEEHHHHHHHHHHHHhcCchHHHHH---HHhhcC----C
Confidence 78999999999999999999999999843 78899999888876222 34444444 334432 5
Q ss_pred EEEEcchhhhh
Q 003769 281 VLYLGDLKWVA 291 (796)
Q Consensus 281 ILfIDElh~l~ 291 (796)
+|+||||.+.-
T Consensus 170 lLIiDDlG~~~ 180 (254)
T COG1484 170 LLIIDDIGYEP 180 (254)
T ss_pred EEEEecccCcc
Confidence 99999997654
No 201
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.92 E-value=3.1e-05 Score=87.89 Aligned_cols=142 Identities=15% Similarity=0.155 Sum_probs=79.9
Q ss_pred HHHHHHHHhh---cc-CceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHH-HHHHHHHH
Q 003769 196 VMSVLNALIN---KK-RNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVE-QKLVELSC 270 (796)
Q Consensus 196 i~~vi~~L~r---~k-~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E-~rl~~l~~ 270 (796)
...++..++. .. +.++|+|+||+|||+++++++..+.+.. .+..++.++...+...+...+. ..+.++.+
T Consensus 121 a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~-----~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~ 195 (405)
T TIGR00362 121 AHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENN-----PNAKVVYVSSEKFTNDFVNALRNNKMEEFKE 195 (405)
T ss_pred HHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhC-----CCCcEEEEEHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444444443 12 3456899999999999999999887541 2467888887665543222221 12333344
Q ss_pred HHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHH-HHHHHHHHHhhhcCCCCcEEEEEec-ChHHHHHhh
Q 003769 271 HVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEE-YVVMEIKRLVFEIGESERVWIMGIA-SFQTYTRCK 348 (796)
Q Consensus 271 ~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d-~~~~eLk~L~~~~~~~G~l~~IGat-T~~ey~k~~ 348 (796)
.++. .-+|+|||+|.+.+.. . ..+ .... +..+. ++|...+|+++ .+.+...
T Consensus 196 ~~~~----~dlLiiDDi~~l~~~~--------~--------~~~~l~~~-~n~~~----~~~~~iiits~~~p~~l~~-- 248 (405)
T TIGR00362 196 KYRS----VDLLLIDDIQFLAGKE--------R--------TQEEFFHT-FNALH----ENGKQIVLTSDRPPKELPG-- 248 (405)
T ss_pred HHHh----CCEEEEehhhhhcCCH--------H--------HHHHHHHH-HHHHH----HCCCCEEEecCCCHHHHhh--
Confidence 4443 3589999999886541 0 111 1111 22333 25554555554 3444432
Q ss_pred hcCccccccccc-eecccCCCCc
Q 003769 349 AGHPSLENMWKL-HPFTIPVGSL 370 (796)
Q Consensus 349 ~~dpaLerrf~l-q~V~vp~~~l 370 (796)
.++.|-+||.- ..|.++.|..
T Consensus 249 -l~~~l~SRl~~g~~v~i~~pd~ 270 (405)
T TIGR00362 249 -LEERLRSRFEWGLVVDIEPPDL 270 (405)
T ss_pred -hhhhhhhhccCCeEEEeCCCCH
Confidence 47788888753 3455555443
No 202
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.92 E-value=3.3e-05 Score=90.81 Aligned_cols=60 Identities=12% Similarity=0.235 Sum_probs=41.5
Q ss_pred ChHHHHHHHHHHhh-ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCC-CCceEEEeeccc
Q 003769 192 DSDDVMSVLNALIN-KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDL-RYAQFISLPLFS 252 (796)
Q Consensus 192 r~~ei~~vi~~L~r-~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L-~~~~v~~l~~~~ 252 (796)
.++.+..+...+.. ...+++|+||||||||++|+.+.+...+... ... .+..|+.+|...
T Consensus 70 qs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~-s~~~~~~~fi~id~~~ 131 (531)
T TIGR02902 70 QEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPA-SPFKEGAAFVEIDATT 131 (531)
T ss_pred cHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccC-CCcCCCCCEEEEcccc
Confidence 45566666666665 6788999999999999999999765432211 112 246789898653
No 203
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.91 E-value=1.6e-05 Score=90.12 Aligned_cols=76 Identities=16% Similarity=0.236 Sum_probs=56.6
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc-cchHH-HHHHHHHHHHH----HHhccCCC
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN-QSKGE-VEQKLVELSCH----VKSYMGRG 279 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a-~~rge-~E~rl~~l~~~----v~~~~~~~ 279 (796)
.+.|++|+||||||||++|+.||.++ +..|+.++...+.. .|.|+ .+..+..++.. +.. ..+
T Consensus 115 ~~~~iLL~GP~GsGKT~lAraLA~~l----------~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~--a~~ 182 (413)
T TIGR00382 115 SKSNILLIGPTGSGKTLLAQTLARIL----------NVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEK--AQK 182 (413)
T ss_pred CCceEEEECCCCcCHHHHHHHHHHhc----------CCCeEEechhhccccccccccHHHHHHHHHHhCcccHHh--ccc
Confidence 46799999999999999999999765 34577778777654 67776 45666665542 222 245
Q ss_pred EEEEEcchhhhhhh
Q 003769 280 IVLYLGDLKWVAEF 293 (796)
Q Consensus 280 ~ILfIDElh~l~~~ 293 (796)
.||||||++.+...
T Consensus 183 gIV~lDEIdkl~~~ 196 (413)
T TIGR00382 183 GIIYIDEIDKISRK 196 (413)
T ss_pred ceEEecccchhchh
Confidence 69999999999875
No 204
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.90 E-value=7.2e-05 Score=79.68 Aligned_cols=133 Identities=14% Similarity=0.112 Sum_probs=71.0
Q ss_pred HHHHHHHhh--ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCce-EEEeecc--------------cc-cccch
Q 003769 197 MSVLNALIN--KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQ-FISLPLF--------------SF-RNQSK 258 (796)
Q Consensus 197 ~~vi~~L~r--~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~-v~~l~~~--------------~l-~a~~r 258 (796)
.++|+.|.. +....+++||+|+|||++++.++..+.... .+.. ++.+-.. .+ .+..-
T Consensus 4 ~~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~-----fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~ 78 (249)
T cd01128 4 TRVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNH-----PEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFD 78 (249)
T ss_pred hhheeeecccCCCCEEEEECCCCCCHHHHHHHHHhcccccc-----CCeEEEEEEccCCCccHHHHHHHhccEEEEecCC
Confidence 366777776 788899999999999999999998765431 1122 2221110 00 11111
Q ss_pred HHHHHHHH---HHHHHHH---hccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC---C
Q 003769 259 GEVEQKLV---ELSCHVK---SYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG---E 329 (796)
Q Consensus 259 ge~E~rl~---~l~~~v~---~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~---~ 329 (796)
..-..|++ .+...++ .. +.++||||||++.+..+-....|. .|..-.++|.+ ..... ++.++.-.+ .
T Consensus 79 ~~~~~~~~~~~~~~~~a~~~~~~-G~~vll~iDei~r~a~a~~ev~~~-~G~~~sgG~~~-~~~~~-~~q~~~~Ar~~~~ 154 (249)
T cd01128 79 EPPERHVQVAEMVLEKAKRLVEH-GKDVVILLDSITRLARAYNTVVPP-SGKILSGGVDA-NALHK-PKRFFGAARNIEE 154 (249)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEECHHHhhhhhhhcccc-CCCCCCCCcCh-hhhhh-hHHHHHHhcCCCC
Confidence 11222222 2222222 22 779999999999998875332121 11111223322 22222 565552111 3
Q ss_pred CCcEEEEEe
Q 003769 330 SERVWIMGI 338 (796)
Q Consensus 330 ~G~l~~IGa 338 (796)
+|.||.+.|
T Consensus 155 ~gsIt~l~T 163 (249)
T cd01128 155 GGSLTIIAT 163 (249)
T ss_pred CCceEEeee
Confidence 788888844
No 205
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=2.5e-05 Score=84.74 Aligned_cols=124 Identities=20% Similarity=0.284 Sum_probs=85.9
Q ss_pred HHHHHHhhcCCCCCCcchHHHHHHHHHHHh--hc------cC--CCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCce
Q 003769 569 KVLSDALERKAVVPWQKEIMPEIARTILEC--RS------KK--EQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNF 638 (796)
Q Consensus 569 ~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~--rs------~~--~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~ 638 (796)
+.+.+.|.+. |+||++|-.+||=+++-. |. .. -.--.|+.|||| |||||+|+.||++. |.+ |
T Consensus 7 reIV~eLd~y--IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTG--VGKTEIARRLAkl~-~aP---F 78 (444)
T COG1220 7 REIVSELDRY--IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTG--VGKTEIARRLAKLA-GAP---F 78 (444)
T ss_pred HHHHHHHHhH--hcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCC--CcHHHHHHHHHHHh-CCC---e
Confidence 4578889999 999999999999998532 33 11 124688999999 99999999999999 655 9
Q ss_pred EEecCCCCccccccccccCCCCCCCCCCc---h----------------------------hhHHHHHHhCCCEEEEEcc
Q 003769 639 TNLSSSQSRQDDCRTKKRSRDVELGCCSY---I----------------------------ERLGLALNENPHRVFFMED 687 (796)
Q Consensus 639 i~~dms~~~~~~~~~~k~~~~~~~~~~~~---~----------------------------~~L~eavr~~P~~Vvl~de 687 (796)
|.+.-+-| +| .||+|.+. + +++.+++--.+..-.=+++
T Consensus 79 iKVEATKf-TE----------VGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~ 147 (444)
T COG1220 79 IKVEATKF-TE----------VGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSE 147 (444)
T ss_pred EEEEeeee-ee----------cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCc
Confidence 99988766 22 45666642 0 2444444333222111222
Q ss_pred cccCCCChHHHHHHHHHHHHcceEecC
Q 003769 688 LDDHKVDSCYCQKGLKQAIENGCIALA 714 (796)
Q Consensus 688 ieka~~~~~~v~~~l~q~~d~G~l~d~ 714 (796)
=+++ ++ ....-|.+-+.+|.|-|.
T Consensus 148 ~~~~--~~-~~r~~~rkkLr~GeLdd~ 171 (444)
T COG1220 148 NKQE--SS-ATREKFRKKLREGELDDK 171 (444)
T ss_pred cccc--ch-HHHHHHHHHHHcCCCCcc
Confidence 2445 66 888889999999999874
No 206
>CHL00176 ftsH cell division protein; Validated
Probab=97.89 E-value=5.9e-05 Score=90.20 Aligned_cols=127 Identities=20% Similarity=0.214 Sum_probs=77.3
Q ss_pred CCCcchHHHHHHHHHHHhhc--------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCcccccc
Q 003769 581 VPWQKEIMPEIARTILECRS--------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCR 652 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs--------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~ 652 (796)
|.|.+++...+...+...+. .++..-+||.||+| +|||.+||+||... | ..|+.++.+++. +..
T Consensus 185 v~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpG--TGKT~LAralA~e~-~---~p~i~is~s~f~-~~~- 256 (638)
T CHL00176 185 IAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPG--TGKTLLAKAIAGEA-E---VPFFSISGSEFV-EMF- 256 (638)
T ss_pred ccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCC--CCHHHHHHHHHHHh-C---CCeeeccHHHHH-HHh-
Confidence 55666666555554433222 23334588999999 99999999999976 3 458888887651 111
Q ss_pred ccccCCCCCCCCCCchhhHHHHHHhCCCEEEEEcccccCC---------CChHHHHHHHHHHHHc--ceEecCCCceecC
Q 003769 653 TKKRSRDVELGCCSYIERLGLALNENPHRVFFMEDLDDHK---------VDSCYCQKGLKQAIEN--GCIALADGEIVPL 721 (796)
Q Consensus 653 ~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vvl~deieka~---------~~~~~v~~~l~q~~d~--G~l~d~~G~~v~~ 721 (796)
.+ .+...+..+.+..+.+..+||||||||... .+. .....+.+.+.. |.. +=
T Consensus 257 -------~g-~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~-e~~~~L~~LL~~~dg~~--------~~ 319 (638)
T CHL00176 257 -------VG-VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGND-EREQTLNQLLTEMDGFK--------GN 319 (638)
T ss_pred -------hh-hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcH-HHHHHHHHHHhhhcccc--------CC
Confidence 11 112234456666777777999999998651 133 344444444422 211 11
Q ss_pred CcEEEEeeCCC
Q 003769 722 KDSIIIFSCDS 732 (796)
Q Consensus 722 ~n~IiilTsn~ 732 (796)
++.+||.|||.
T Consensus 320 ~~ViVIaaTN~ 330 (638)
T CHL00176 320 KGVIVIAATNR 330 (638)
T ss_pred CCeeEEEecCc
Confidence 35788888885
No 207
>PRK08727 hypothetical protein; Validated
Probab=97.89 E-value=0.00011 Score=77.44 Aligned_cols=69 Identities=13% Similarity=0.051 Sum_probs=50.3
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
..+.++|+|++|+|||+++.+++....+. +.+++.+++. ++..++.++++.+.. .-+|+||
T Consensus 40 ~~~~l~l~G~~G~GKThL~~a~~~~~~~~-------~~~~~y~~~~--------~~~~~~~~~~~~l~~----~dlLiID 100 (233)
T PRK08727 40 SSDWLYLSGPAGTGKTHLALALCAAAEQA-------GRSSAYLPLQ--------AAAGRLRDALEALEG----RSLVALD 100 (233)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEEeHH--------HhhhhHHHHHHHHhc----CCEEEEe
Confidence 33457889999999999999999887653 4566666643 344456666666654 3599999
Q ss_pred chhhhhhh
Q 003769 286 DLKWVAEF 293 (796)
Q Consensus 286 Elh~l~~~ 293 (796)
|++++.+.
T Consensus 101 Di~~l~~~ 108 (233)
T PRK08727 101 GLESIAGQ 108 (233)
T ss_pred CcccccCC
Confidence 99988754
No 208
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.89 E-value=5e-05 Score=88.32 Aligned_cols=129 Identities=17% Similarity=0.161 Sum_probs=74.0
Q ss_pred CCCcchHHHHHHHHHHHhh-------c--cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCC-------CCCceEEecCC
Q 003769 581 VPWQKEIMPEIARTILECR-------S--KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGS-------HSNNFTNLSSS 644 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~r-------s--~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~-------~~~~~i~~dms 644 (796)
|.|+++.+..|-.+|..-- . -+|..-+||.||+| +|||.+||++|..+... . ..|+.+..+
T Consensus 184 IgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPG--TGKT~LAKAlA~eL~~~i~~~~~~~-~~fl~v~~~ 260 (512)
T TIGR03689 184 IGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPG--CGKTLIAKAVANSLAQRIGAETGDK-SYFLNIKGP 260 (512)
T ss_pred cCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCC--CcHHHHHHHHHHhhccccccccCCc-eeEEeccch
Confidence 5567777777777764321 1 23444588999999 99999999999987422 1 223333322
Q ss_pred CCccccccccccCCCCCCCCCCc--hhhHHHHHHh----CCCEEEEEcccccCC------CCh---HHHHHHHHHHHHcc
Q 003769 645 QSRQDDCRTKKRSRDVELGCCSY--IERLGLALNE----NPHRVFFMEDLDDHK------VDS---CYCQKGLKQAIENG 709 (796)
Q Consensus 645 ~~~~~~~~~~k~~~~~~~~~~~~--~~~L~eavr~----~P~~Vvl~deieka~------~~~---~~v~~~l~q~~d~G 709 (796)
+. ..+ |.|... +..+.+..++ +..+||||||||..- .+. ..+.+-|++.||.-
T Consensus 261 eL------l~k------yvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 261 EL------LNK------YVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred hh------ccc------ccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccc
Confidence 11 001 222211 1244444444 357899999999530 011 02345566666421
Q ss_pred eEecCCCceecCCcEEEEeeCCCC
Q 003769 710 CIALADGEIVPLKDSIIIFSCDSL 733 (796)
Q Consensus 710 ~l~d~~G~~v~~~n~IiilTsn~~ 733 (796)
-+..+.+||+|||-.
T Consensus 329 ---------~~~~~ViVI~ATN~~ 343 (512)
T TIGR03689 329 ---------ESLDNVIVIGASNRE 343 (512)
T ss_pred ---------ccCCceEEEeccCCh
Confidence 123578999999963
No 209
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.89 E-value=0.00011 Score=81.34 Aligned_cols=130 Identities=14% Similarity=0.128 Sum_probs=82.5
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCc---eEEecCC---CCcccccccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNN---FTNLSSS---QSRQDDCRTK 654 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~---~i~~dms---~~~~~~~~~~ 654 (796)
.|||..+-..+... ..|-...+||.||.| +|||.+|+.+|+.+.... .. --+-.+. ....+.|.-.
T Consensus 3 yPW~~~~w~~l~~~-----~~r~~hA~Lf~G~~G--~GK~~la~~~a~~llC~~-~~~~~~~Cg~C~~C~~~~~~~HpD~ 74 (325)
T PRK08699 3 YPWHQEQWRQIAEH-----WERRPNAWLFAGKKG--IGKTAFARFAAQALLCET-PAPGHKPCGECMSCHLFGQGSHPDF 74 (325)
T ss_pred CCccHHHHHHHHHh-----cCCcceEEEeECCCC--CCHHHHHHHHHHHHcCCC-CCCCCCCCCcCHHHHHHhcCCCCCE
Confidence 59999998888766 235556788999999 999999999999998643 10 0000000 0001111100
Q ss_pred ccCCCC---CC-------CCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceec
Q 003769 655 KRSRDV---EL-------GCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVP 720 (796)
Q Consensus 655 k~~~~~---~~-------~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~ 720 (796)
..+.+. +. .+-+.+-.|.+.+...| ++||++|+++.- ++ ..+|.|++.+++..
T Consensus 75 ~~~~p~~~~~~~g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~L--d~-~a~naLLk~LEep~---------- 141 (325)
T PRK08699 75 YEITPLSDEPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESM--NL-QAANSLLKVLEEPP---------- 141 (325)
T ss_pred EEEecccccccccccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhC--CH-HHHHHHHHHHHhCc----------
Confidence 001000 00 11122346777887766 579999999999 99 99999999999862
Q ss_pred CCcEEEEeeCCC
Q 003769 721 LKDSIIIFSCDS 732 (796)
Q Consensus 721 ~~n~IiilTsn~ 732 (796)
.+++||++|+.
T Consensus 142 -~~~~~Ilvth~ 152 (325)
T PRK08699 142 -PQVVFLLVSHA 152 (325)
T ss_pred -CCCEEEEEeCC
Confidence 23556666653
No 210
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.88 E-value=3.7e-05 Score=88.44 Aligned_cols=129 Identities=8% Similarity=0.097 Sum_probs=74.8
Q ss_pred CceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHH-HHHHHHHHHHhccCCCEEEEEcc
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQ-KLVELSCHVKSYMGRGIVLYLGD 286 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~-rl~~l~~~v~~~~~~~~ILfIDE 286 (796)
|.++|+||||+|||+++++++..+.+. +.+++.++...+...+...+.. .+..+....+ ..-+|+|||
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~-------~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~----~~dvLiIDD 210 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES-------GGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR----NVDALFIED 210 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc-------CCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc----cCCEEEEcc
Confidence 446689999999999999999988643 4678888866554432222221 1112222222 346999999
Q ss_pred hhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecC-hHHHHHhhhcCccccccccc-eecc
Q 003769 287 LKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIAS-FQTYTRCKAGHPSLENMWKL-HPFT 364 (796)
Q Consensus 287 lh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT-~~ey~k~~~~dpaLerrf~l-q~V~ 364 (796)
+|.+.+.. .. .-+.... +..+. .+|...+|++++ +.++. ..++.|.+||.- ..+.
T Consensus 211 iq~l~~k~-------~~--------qeelf~l-~N~l~----~~~k~IIlts~~~p~~l~---~l~~rL~SR~~~Gl~~~ 267 (445)
T PRK12422 211 IEVFSGKG-------AT--------QEEFFHT-FNSLH----TEGKLIVISSTCAPQDLK---AMEERLISRFEWGIAIP 267 (445)
T ss_pred hhhhcCCh-------hh--------HHHHHHH-HHHHH----HCCCcEEEecCCCHHHHh---hhHHHHHhhhcCCeEEe
Confidence 99986531 10 0111111 22343 256666666644 56654 357889998741 3455
Q ss_pred cCCCCc
Q 003769 365 IPVGSL 370 (796)
Q Consensus 365 vp~~~l 370 (796)
++.|+.
T Consensus 268 l~~pd~ 273 (445)
T PRK12422 268 LHPLTK 273 (445)
T ss_pred cCCCCH
Confidence 554443
No 211
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.87 E-value=5.8e-05 Score=80.48 Aligned_cols=105 Identities=17% Similarity=0.220 Sum_probs=80.0
Q ss_pred CCCcchHHHHHHHHHHHhhc-cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCC
Q 003769 581 VPWQKEIMPEIARTILECRS-KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs-~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~ 659 (796)
.+||+++-+.+.=.|.-++. +...--.||.||+| .|||+||.-+|..+ |.+ +++-- +.+ .-|
T Consensus 28 fiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPG--lGKTTLA~IIA~Em-gvn----~k~ts-----Gp~-leK---- 90 (332)
T COG2255 28 FIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPG--LGKTTLAHIIANEL-GVN----LKITS-----GPA-LEK---- 90 (332)
T ss_pred hcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCC--CcHHHHHHHHHHHh-cCC----eEecc-----ccc-ccC----
Confidence 69999999999888887777 55677888999999 99999999999999 544 22211 111 000
Q ss_pred CCCCCCCchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEe
Q 003769 660 VELGCCSYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIA 712 (796)
Q Consensus 660 ~~~~~~~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~ 712 (796)
| ++....||. -.|+.|+|+|||... .| .|..+|+-+||+-++-
T Consensus 91 ~----gDlaaiLt~---Le~~DVLFIDEIHrl--~~-~vEE~LYpaMEDf~lD 133 (332)
T COG2255 91 P----GDLAAILTN---LEEGDVLFIDEIHRL--SP-AVEEVLYPAMEDFRLD 133 (332)
T ss_pred h----hhHHHHHhc---CCcCCeEEEehhhhc--Ch-hHHHHhhhhhhheeEE
Confidence 1 122233332 489999999999999 99 9999999999999886
No 212
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.87 E-value=2.7e-05 Score=87.87 Aligned_cols=69 Identities=22% Similarity=0.342 Sum_probs=57.9
Q ss_pred HHHHHHhhcCCCCCCcchHHHHHHHHHHHh--hc---------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCc
Q 003769 569 KVLSDALERKAVVPWQKEIMPEIARTILEC--RS---------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNN 637 (796)
Q Consensus 569 ~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~--rs---------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~ 637 (796)
+.+.+.|.+. |+||++|+..++-+++.. |. .+| ..+||.||+| +|||++|++||+.+ + -+
T Consensus 4 ~~I~~~Ld~~--IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p-~~ILLiGppG--~GKT~lAraLA~~l-~---~~ 74 (441)
T TIGR00390 4 REIVAELDKY--IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTP-KNILMIGPTG--VGKTEIARRLAKLA-N---AP 74 (441)
T ss_pred HHHHHHHhhh--ccCHHHHHHHHHHHHHhhhhhhccccccccccCC-ceEEEECCCC--CCHHHHHHHHHHHh-C---Ce
Confidence 4678899999 999999999999999853 22 123 6789999999 99999999999998 4 45
Q ss_pred eEEecCCCC
Q 003769 638 FTNLSSSQS 646 (796)
Q Consensus 638 ~i~~dms~~ 646 (796)
|+++|++++
T Consensus 75 fi~vdat~~ 83 (441)
T TIGR00390 75 FIKVEATKF 83 (441)
T ss_pred EEEeeccee
Confidence 999998854
No 213
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=7.1e-05 Score=83.48 Aligned_cols=127 Identities=18% Similarity=0.255 Sum_probs=84.2
Q ss_pred HHHHHHHHhhcCCCCCCcchHHHHHHHHHHHh-hc------------------cC-------------CC----------
Q 003769 567 NLKVLSDALERKAVVPWQKEIMPEIARTILEC-RS------------------KK-------------EQ---------- 604 (796)
Q Consensus 567 ~L~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~-rs------------------~~-------------~~---------- 604 (796)
-.+.+|+.|.+- |+||+.|-.-++-+|... |. .+ +.
T Consensus 135 ~PkeI~~~Ldk~--VVGQe~AKKvLsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~~ 212 (564)
T KOG0745|consen 135 TPKEICEYLDKF--VVGQEKAKKVLSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQIA 212 (564)
T ss_pred ChHHHHHHhhhh--eechhhhhheeeehhhHHHHHHhcchHHHHHHHhhhhhcccCCCCcccccccccccccccccchhc
Confidence 457799999999 999999987777666332 11 00 01
Q ss_pred --------------eEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCch--
Q 003769 605 --------------TWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYI-- 668 (796)
Q Consensus 605 --------------~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~-- 668 (796)
.-+|++|||| .|||-||+.||+.| . -.|.-.|+..-. -.||+|-+.-
T Consensus 213 ~~ld~~~~dv~LeKSNvLllGPtG--sGKTllaqTLAr~l-d---VPfaIcDcTtLT-----------QAGYVGeDVEsv 275 (564)
T KOG0745|consen 213 KALDEDDEDVELEKSNVLLLGPTG--SGKTLLAQTLARVL-D---VPFAICDCTTLT-----------QAGYVGEDVESV 275 (564)
T ss_pred ccccccccceeeecccEEEECCCC--CchhHHHHHHHHHh-C---CCeEEecccchh-----------hcccccccHHHH
Confidence 2479999999 99999999999999 3 347667775321 1345555321
Q ss_pred -h-hHHHH---HHhCCCEEEEEcccccCC-----------CChHHHHHHHHHHHHcceEec
Q 003769 669 -E-RLGLA---LNENPHRVFFMEDLDDHK-----------VDSCYCQKGLKQAIENGCIAL 713 (796)
Q Consensus 669 -~-~L~ea---vr~~P~~Vvl~deieka~-----------~~~~~v~~~l~q~~d~G~l~d 713 (796)
. .|++| |-+--.-+|+||||||-. +.=+.||..||..+| |.+..
T Consensus 276 i~KLl~~A~~nVekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllE-GtvVn 335 (564)
T KOG0745|consen 276 IQKLLQEAEYNVEKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLE-GTVVN 335 (564)
T ss_pred HHHHHHHccCCHHHHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhc-ccEEc
Confidence 1 23332 333445689999999752 222368999999885 55543
No 214
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.86 E-value=3.8e-05 Score=84.41 Aligned_cols=140 Identities=11% Similarity=0.086 Sum_probs=81.9
Q ss_pred ChHHHHHHHHHHhhccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeeccccccc--chHHHH-------
Q 003769 192 DSDDVMSVLNALINKKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQ--SKGEVE------- 262 (796)
Q Consensus 192 r~~ei~~vi~~L~r~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~--~rge~E------- 262 (796)
+.+-++.++..|. ..++++|.|+||+|||++++.||.++. ..++.+++..-+.. .-|...
T Consensus 50 ~~~~~~~vl~~l~-~~~~ilL~G~pGtGKTtla~~lA~~l~----------~~~~rV~~~~~l~~~DliG~~~~~l~~g~ 118 (327)
T TIGR01650 50 DKATTKAICAGFA-YDRRVMVQGYHGTGKSTHIEQIAARLN----------WPCVRVNLDSHVSRIDLVGKDAIVLKDGK 118 (327)
T ss_pred CHHHHHHHHHHHh-cCCcEEEEeCCCChHHHHHHHHHHHHC----------CCeEEEEecCCCChhhcCCCceeeccCCc
Confidence 5555565665555 577899999999999999999999873 44555544322220 111100
Q ss_pred --HH-HHHHHHHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhh-----c-C-----
Q 003769 263 --QK-LVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFE-----I-G----- 328 (796)
Q Consensus 263 --~r-l~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~-----~-~----- 328 (796)
.. ....+-.+. ..+.+|++||+..+-+. .+.. |-+++.. + +
T Consensus 119 ~~~~f~~GpL~~A~---~~g~illlDEin~a~p~------------------~~~~----L~~lLE~~~~l~i~~~~~~i 173 (327)
T TIGR01650 119 QITEFRDGILPWAL---QHNVALCFDEYDAGRPD------------------VMFV----IQRVLEAGGKLTLLDQNRVI 173 (327)
T ss_pred ceeEEecCcchhHH---hCCeEEEechhhccCHH------------------HHHH----HHHHhccCCeEEECCCceEe
Confidence 00 011222222 24689999999865332 2222 3334421 1 0
Q ss_pred -CCCcEEEEEecChHH-------HHHhhhcCccccccccce-ecccCC
Q 003769 329 -ESERVWIMGIASFQT-------YTRCKAGHPSLENMWKLH-PFTIPV 367 (796)
Q Consensus 329 -~~G~l~~IGatT~~e-------y~k~~~~dpaLerrf~lq-~V~vp~ 367 (796)
....+++|+++++.+ |.-...-+.|+-.||-+. .+.-|+
T Consensus 174 ~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~ 221 (327)
T TIGR01650 174 RAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLE 221 (327)
T ss_pred cCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCC
Confidence 123588899988866 777777888888888532 343344
No 215
>PRK12377 putative replication protein; Provisional
Probab=97.86 E-value=2.6e-05 Score=82.96 Aligned_cols=74 Identities=9% Similarity=-0.015 Sum_probs=51.6
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHH--HHHHHHHHHHhccCCCEEEE
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQ--KLVELSCHVKSYMGRGIVLY 283 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~--rl~~l~~~v~~~~~~~~ILf 283 (796)
...+++|.|+||||||+++.+++..+.+. +..++.+++..++...+..+.. ...++++.+.. .-+|+
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~-------g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~----~dLLi 168 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK-------GRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCK----VDLLV 168 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcC----CCEEE
Confidence 34689999999999999999999998743 5677777776766633322211 12344555543 47999
Q ss_pred Ecchhhh
Q 003769 284 LGDLKWV 290 (796)
Q Consensus 284 IDElh~l 290 (796)
||||...
T Consensus 169 IDDlg~~ 175 (248)
T PRK12377 169 LDEIGIQ 175 (248)
T ss_pred EcCCCCC
Confidence 9999654
No 216
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00014 Score=86.30 Aligned_cols=119 Identities=14% Similarity=0.100 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHhh-ccCce-EEEcCCcccHHHHHHHHHHHHHcCCC----C----------CCCCCceEEEeeccccccc
Q 003769 193 SDDVMSVLNALIN-KKRNT-VIVGGNLAAIEGVIRGIIDQFERGQV----P----------GDLRYAQFISLPLFSFRNQ 256 (796)
Q Consensus 193 ~~ei~~vi~~L~r-~k~n~-vLvGepGvGKTaiv~~la~ri~~~~v----p----------~~L~~~~v~~l~~~~l~a~ 256 (796)
+.-++.+...+.+ +..+. +|.||||||||++++.+|+.+....- | ..-....|+.+|.++-.
T Consensus 21 e~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~-- 98 (702)
T PRK14960 21 NHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRT-- 98 (702)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccC--
Confidence 3444555555555 43444 88899999999999999998853211 1 01122356777754311
Q ss_pred chHHHHHHHHHHHHHHHhcc--CCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEE
Q 003769 257 SKGEVEQKLVELSCHVKSYM--GRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVW 334 (796)
Q Consensus 257 ~rge~E~rl~~l~~~v~~~~--~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~ 334 (796)
... .++++++.+.... ++.-|+||||+|.|-.. +.|. |.+.+.. ..+.+.
T Consensus 99 ~Vd----dIReli~~~~y~P~~gk~KV~IIDEVh~LS~~---------------------A~NA-LLKtLEE--PP~~v~ 150 (702)
T PRK14960 99 KVE----DTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH---------------------SFNA-LLKTLEE--PPEHVK 150 (702)
T ss_pred CHH----HHHHHHHHHhhhhhcCCcEEEEEechHhcCHH---------------------HHHH-HHHHHhc--CCCCcE
Confidence 122 3555665554211 45679999999988653 2333 4444421 146678
Q ss_pred EEEecCh
Q 003769 335 IMGIASF 341 (796)
Q Consensus 335 ~IGatT~ 341 (796)
+|.+||.
T Consensus 151 FILaTtd 157 (702)
T PRK14960 151 FLFATTD 157 (702)
T ss_pred EEEEECC
Confidence 8888865
No 217
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=97.86 E-value=6.3e-05 Score=83.71 Aligned_cols=139 Identities=12% Similarity=0.124 Sum_probs=78.6
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEE---ecCCCCccccc------
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTN---LSSSQSRQDDC------ 651 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~---~dms~~~~~~~------ 651 (796)
|+||+++..++..++. +..++-+||.||.| +|||.+||.+++++-... .+. |+...+..+..
T Consensus 19 ivGq~~~k~al~~~~~----~p~~~~vli~G~~G--tGKs~~ar~~~~~l~~~~---~~~~~pf~~~p~~p~~~~~~~~~ 89 (350)
T CHL00081 19 IVGQEEMKLALILNVI----DPKIGGVMIMGDRG--TGKSTTIRALVDLLPEIE---VVKDDPFNSHPSDPELMSDEVRE 89 (350)
T ss_pred HhChHHHHHHHHHhcc----CCCCCeEEEEcCCC--CCHHHHHHHHHHHHhhcC---ccCCCCCCCCCCChhhhchhhhh
Confidence 8999988776655443 34557788999999 999999999999986321 111 11000000000
Q ss_pred --------cccccCC----CCCCCCCC-chh--hHHHHHH------------hCCCEEEEEcccccCCCChHHHHHHHHH
Q 003769 652 --------RTKKRSR----DVELGCCS-YIE--RLGLALN------------ENPHRVFFMEDLDDHKVDSCYCQKGLKQ 704 (796)
Q Consensus 652 --------~~~k~~~----~~~~~~~~-~~~--~L~eavr------------~~P~~Vvl~deieka~~~~~~v~~~l~q 704 (796)
...++.- -|.....+ .+| -+..+++ +--..|+++|||+.+ .+ .+|..|++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL--~~-~~Q~~LLe 166 (350)
T CHL00081 90 AIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL--DD-HLVDILLD 166 (350)
T ss_pred hhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC--CH-HHHHHHHH
Confidence 0000000 01000000 001 1222221 112369999999999 99 99999999
Q ss_pred HHHcceEe-cCCCceecCC-cEEEEeeCC
Q 003769 705 AIENGCIA-LADGEIVPLK-DSIIIFSCD 731 (796)
Q Consensus 705 ~~d~G~l~-d~~G~~v~~~-n~IiilTsn 731 (796)
+|++|..+ ...|....+. ..|+|.|.|
T Consensus 167 am~e~~~~ier~G~s~~~p~rfiviaT~n 195 (350)
T CHL00081 167 SAASGWNTVEREGISIRHPARFVLVGSGN 195 (350)
T ss_pred HHHhCCeEEeeCCeeeecCCCEEEEeccC
Confidence 99998654 2234443332 556666666
No 218
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.86 E-value=0.00013 Score=82.72 Aligned_cols=126 Identities=12% Similarity=0.051 Sum_probs=73.0
Q ss_pred CceEEEcCCcccHHHHHHHHHHHHHcCCC---CC----------CCCCceEEEeecccccccchHHHHHHHHHHHHHHHh
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQFERGQV---PG----------DLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKS 274 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri~~~~v---p~----------~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~ 274 (796)
...+|.||||+|||++++.+|+.+...+. |- ......++.+.... .....++ ++++++.+..
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~-~~i~i~~----iR~l~~~~~~ 111 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEG-LSIGVDE----VRELVTIAAR 111 (394)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEecccc-ccCCHHH----HHHHHHHHHh
Confidence 34778899999999999999998754321 10 00011122222111 0112222 5667666653
Q ss_pred cc--CCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCc
Q 003769 275 YM--GRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHP 352 (796)
Q Consensus 275 ~~--~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dp 352 (796)
.. ++.-|+||||+|.+... ++|.-||.|-.. ..+.+++++|++++ ...|
T Consensus 112 ~p~~~~~kViiIDead~m~~~---------------------aanaLLk~LEep--~~~~~fIL~a~~~~------~llp 162 (394)
T PRK07940 112 RPSTGRWRIVVIEDADRLTER---------------------AANALLKAVEEP--PPRTVWLLCAPSPE------DVLP 162 (394)
T ss_pred CcccCCcEEEEEechhhcCHH---------------------HHHHHHHHhhcC--CCCCeEEEEECChH------HChH
Confidence 21 44569999999999654 334413333210 14778899888854 4568
Q ss_pred cccccccceecccCCCC
Q 003769 353 SLENMWKLHPFTIPVGS 369 (796)
Q Consensus 353 aLerrf~lq~V~vp~~~ 369 (796)
++-+|. |.+.++.++
T Consensus 163 TIrSRc--~~i~f~~~~ 177 (394)
T PRK07940 163 TIRSRC--RHVALRTPS 177 (394)
T ss_pred HHHhhC--eEEECCCCC
Confidence 888885 555555443
No 219
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.86 E-value=1.6e-05 Score=91.17 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=37.7
Q ss_pred ChHHHHHHHHHHhhccCceEEEcCCcccHHHHHHHHHHHHHcC
Q 003769 192 DSDDVMSVLNALINKKRNTVIVGGNLAAIEGVIRGIIDQFERG 234 (796)
Q Consensus 192 r~~ei~~vi~~L~r~k~n~vLvGepGvGKTaiv~~la~ri~~~ 234 (796)
|++.|+.++.++. ...|++|.||||||||++|+.|+..+...
T Consensus 25 re~vI~lll~aal-ag~hVLL~GpPGTGKT~LAraLa~~~~~~ 66 (498)
T PRK13531 25 RSHAIRLCLLAAL-SGESVFLLGPPGIAKSLIARRLKFAFQNA 66 (498)
T ss_pred cHHHHHHHHHHHc-cCCCEEEECCCChhHHHHHHHHHHHhccc
Confidence 8899999988887 69999999999999999999999987543
No 220
>PLN03025 replication factor C subunit; Provisional
Probab=97.85 E-value=0.0001 Score=81.03 Aligned_cols=94 Identities=14% Similarity=0.127 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHhh--ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHH
Q 003769 193 SDDVMSVLNALIN--KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSC 270 (796)
Q Consensus 193 ~~ei~~vi~~L~r--~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~ 270 (796)
++++...+..+.. +..+.+|+||||+|||++++++|..+..... ...++.++.+... ..+.+.+.++....
T Consensus 18 ~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~-----~~~~~eln~sd~~--~~~~vr~~i~~~~~ 90 (319)
T PLN03025 18 NEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNY-----KEAVLELNASDDR--GIDVVRNKIKMFAQ 90 (319)
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccC-----ccceeeecccccc--cHHHHHHHHHHHHh
Confidence 4454444444444 5568899999999999999999998753211 1246666654332 23334444443221
Q ss_pred HHHhc-cCCCEEEEEcchhhhhhh
Q 003769 271 HVKSY-MGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 271 ~v~~~-~~~~~ILfIDElh~l~~~ 293 (796)
..... .++.-|++|||+|.+...
T Consensus 91 ~~~~~~~~~~kviiiDE~d~lt~~ 114 (319)
T PLN03025 91 KKVTLPPGRHKIVILDEADSMTSG 114 (319)
T ss_pred ccccCCCCCeEEEEEechhhcCHH
Confidence 11000 023579999999998754
No 221
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.00011 Score=80.98 Aligned_cols=130 Identities=12% Similarity=0.230 Sum_probs=85.5
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCC------cccccccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQS------RQDDCRTK 654 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~------~~~~~~~~ 654 (796)
.|||..+-..+.+++.+-|- .-.+||.||+| +||+.+|+++|+.++... ..=.. -+... ..+.|.-.
T Consensus 4 yPW~~~~~~~l~~~~~~~rl---~HA~Lf~G~~G--~GK~~lA~~~A~~llC~~-~~~~~-~Cg~C~sC~~~~~g~HPD~ 76 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLG---HHALLFKADSG--LGTEQLIRALAQWLMCQT-PQGDQ-PCGQCHSCHLFQAGNHPDF 76 (325)
T ss_pred CcchHHHHHHHHHHHHcCCc---ceeEEeECCCC--CCHHHHHHHHHHHHcCCC-CCCCC-CCCCCHHHHHHhcCCCCCE
Confidence 59999998888888765443 34677999999 999999999999999854 21000 01000 01112100
Q ss_pred ccCCCCC---CCCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEE
Q 003769 655 KRSRDVE---LGCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIII 727 (796)
Q Consensus 655 k~~~~~~---~~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~Iii 727 (796)
..+. |. ..+-+.+-.|.+.+...| |+|+++|++|+. .. ...|.||..+|+ +=.+++||
T Consensus 77 ~~i~-p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m--~~-~AaNaLLKtLEE-----------Pp~~~~fi 141 (325)
T PRK06871 77 HILE-PIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERL--TE-AAANALLKTLEE-----------PRPNTYFL 141 (325)
T ss_pred EEEc-cccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhh--CH-HHHHHHHHHhcC-----------CCCCeEEE
Confidence 0000 10 011122235556665555 589999999999 99 999999999976 23788999
Q ss_pred eeCCC
Q 003769 728 FSCDS 732 (796)
Q Consensus 728 lTsn~ 732 (796)
|+|+.
T Consensus 142 L~t~~ 146 (325)
T PRK06871 142 LQADL 146 (325)
T ss_pred EEECC
Confidence 98864
No 222
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.84 E-value=5e-05 Score=91.90 Aligned_cols=108 Identities=22% Similarity=0.321 Sum_probs=70.8
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDV 660 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~ 660 (796)
++||+.++.. -..+++.-......+++|.||+| +|||.+|+.+|+.+ + ..|+.++.+.....+ . .
T Consensus 30 ~vGQe~ii~~-~~~L~~~i~~~~~~slLL~GPpG--tGKTTLA~aIA~~~-~---~~f~~lna~~~~i~d--i------r 94 (725)
T PRK13341 30 FVGQDHILGE-GRLLRRAIKADRVGSLILYGPPG--VGKTTLARIIANHT-R---AHFSSLNAVLAGVKD--L------R 94 (725)
T ss_pred hcCcHHHhhh-hHHHHHHHhcCCCceEEEECCCC--CCHHHHHHHHHHHh-c---CcceeehhhhhhhHH--H------H
Confidence 7899998854 23333333345567899999999 99999999999876 2 346666654211000 0 0
Q ss_pred CCCCCCchhhHHHHHHh-CCCEEEEEcccccCCCChHHHHHHHHHHHHcceE
Q 003769 661 ELGCCSYIERLGLALNE-NPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCI 711 (796)
Q Consensus 661 ~~~~~~~~~~L~eavr~-~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l 711 (796)
...+...+.+.. ..+.|++||||+.. .. ..++.|+..+++|.+
T Consensus 95 -----~~i~~a~~~l~~~~~~~IL~IDEIh~L--n~-~qQdaLL~~lE~g~I 138 (725)
T PRK13341 95 -----AEVDRAKERLERHGKRTILFIDEVHRF--NK-AQQDALLPWVENGTI 138 (725)
T ss_pred -----HHHHHHHHHhhhcCCceEEEEeChhhC--CH-HHHHHHHHHhcCceE
Confidence 001111111221 34679999999999 88 899999999987753
No 223
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.84 E-value=7.2e-05 Score=87.11 Aligned_cols=138 Identities=15% Similarity=0.205 Sum_probs=85.2
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCC-cc-ccc----ccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQS-RQ-DDC----RTK 654 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~-~~-~~~----~~~ 654 (796)
|.||..++..+.-++. ...-++|.||+| +|||.+|+.|+.++.... . -+.++.+.. +. +.. ...
T Consensus 194 v~Gq~~~~~al~~aa~------~g~~vlliG~pG--sGKTtlar~l~~llp~~~-~-~~~le~~~i~s~~g~~~~~~~~~ 263 (499)
T TIGR00368 194 IKGQQHAKRALEIAAA------GGHNLLLFGPPG--SGKTMLASRLQGILPPLT-N-EEAIETARIWSLVGKLIDRKQIK 263 (499)
T ss_pred hcCcHHHHhhhhhhcc------CCCEEEEEecCC--CCHHHHHHHHhcccCCCC-C-cEEEeccccccchhhhccccccc
Confidence 8999988766554442 334688999999 999999999999887543 1 123333211 00 000 000
Q ss_pred ccC-CC-------CCCCCCCchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEec-CCCceecC-CcE
Q 003769 655 KRS-RD-------VELGCCSYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIAL-ADGEIVPL-KDS 724 (796)
Q Consensus 655 k~~-~~-------~~~~~~~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d-~~G~~v~~-~n~ 724 (796)
.++ ++ ....|++-.-+ -..+..-..-|+|||||++. .+ .+++.|+|.||+|.++- ..|..+.| .+.
T Consensus 264 ~~Pf~~p~~s~s~~~~~ggg~~~~-pG~i~lA~~GvLfLDEi~e~--~~-~~~~~L~~~LE~~~v~i~r~g~~~~~pa~f 339 (499)
T TIGR00368 264 QRPFRSPHHSASKPALVGGGPIPL-PGEISLAHNGVLFLDELPEF--KR-SVLDALREPIEDGSISISRASAKIFYPARF 339 (499)
T ss_pred cCCccccccccchhhhhCCccccc-hhhhhccCCCeEecCChhhC--CH-HHHHHHHHHHHcCcEEEEecCcceeccCCe
Confidence 111 00 11112221101 11233345589999999999 99 99999999999999863 33444444 578
Q ss_pred EEEeeCCC
Q 003769 725 IIIFSCDS 732 (796)
Q Consensus 725 IiilTsn~ 732 (796)
.+|.++|.
T Consensus 340 rlIaa~Np 347 (499)
T TIGR00368 340 QLVAAMNP 347 (499)
T ss_pred EEEEecCC
Confidence 88988884
No 224
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.00012 Score=80.66 Aligned_cols=129 Identities=12% Similarity=0.192 Sum_probs=86.7
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCC------cccccccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQS------RQDDCRTK 654 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~------~~~~~~~~ 654 (796)
.|||.++-..+.+++.+- |-.-.+||.||.| +||+.+|+.+|+.++... ..- --+... ..+.|.-.
T Consensus 5 yPWl~~~~~~l~~~~~~~---rl~hA~L~~G~~G--~Gk~~lA~~~a~~llC~~-~~~--~~Cg~C~sC~~~~~g~HPD~ 76 (319)
T PRK06090 5 YPWLVPVWQNWKAGLDAG---RIPGALLLQSDEG--LGVESLVELFSRALLCQN-YQS--EACGFCHSCELMQSGNHPDL 76 (319)
T ss_pred cccHHHHHHHHHHHHHcC---CcceeEeeECCCC--CCHHHHHHHHHHHHcCCC-CCC--CCCCCCHHHHHHHcCCCCCE
Confidence 699999998888777543 3445788999999 999999999999999865 321 001100 01122111
Q ss_pred ccCCCCCCCCC----CchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEE
Q 003769 655 KRSRDVELGCC----SYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSII 726 (796)
Q Consensus 655 k~~~~~~~~~~----~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~Ii 726 (796)
..+. |...|. +.+..+.+.+...| |+|++||++|+. .. ...|.||..+|+ +-.|++|
T Consensus 77 ~~i~-p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m--~~-~AaNaLLKtLEE-----------Pp~~t~f 141 (319)
T PRK06090 77 HVIK-PEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAM--NE-SASNALLKTLEE-----------PAPNCLF 141 (319)
T ss_pred EEEe-cCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhh--CH-HHHHHHHHHhcC-----------CCCCeEE
Confidence 1111 111111 12235555665555 899999999999 99 999999999975 3478999
Q ss_pred EeeCCC
Q 003769 727 IFSCDS 732 (796)
Q Consensus 727 ilTsn~ 732 (796)
||+|+.
T Consensus 142 iL~t~~ 147 (319)
T PRK06090 142 LLVTHN 147 (319)
T ss_pred EEEECC
Confidence 998764
No 225
>PHA02244 ATPase-like protein
Probab=97.83 E-value=5.1e-05 Score=84.51 Aligned_cols=123 Identities=8% Similarity=0.091 Sum_probs=70.4
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecc----cccc--cchHHHHHHHHHHHHHHHhccCCC
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLF----SFRN--QSKGEVEQKLVELSCHVKSYMGRG 279 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~----~l~a--~~rge~E~rl~~l~~~v~~~~~~~ 279 (796)
...+++|+||||||||++|+.++..+ +.+++.++.- .+.. ...|.|+ -..++..++ .+
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~l----------g~pfv~In~l~d~~~L~G~i~~~g~~~--dgpLl~A~~----~G 181 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEAL----------DLDFYFMNAIMDEFELKGFIDANGKFH--ETPFYEAFK----KG 181 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecChHHHhhccccccccccc--chHHHHHhh----cC
Confidence 67788999999999999999999874 3456666521 0110 0111121 112333333 36
Q ss_pred EEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhh-----hcC----CCCcEEEEEecChH--HHHHh-
Q 003769 280 IVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVF-----EIG----ESERVWIMGIASFQ--TYTRC- 347 (796)
Q Consensus 280 ~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~-----~~~----~~G~l~~IGatT~~--ey~k~- 347 (796)
.+|||||++.+-.. .... |.+++. -.+ ...++++|+++++. .|...
T Consensus 182 gvLiLDEId~a~p~------------------vq~~----L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y 239 (383)
T PHA02244 182 GLFFIDEIDASIPE------------------ALII----INSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIY 239 (383)
T ss_pred CEEEEeCcCcCCHH------------------HHHH----HHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCccccc
Confidence 79999999866443 1111 333331 111 13568999998873 23211
Q ss_pred ---hhcCccccccccceecccC
Q 003769 348 ---KAGHPSLENMWKLHPFTIP 366 (796)
Q Consensus 348 ---~~~dpaLerrf~lq~V~vp 366 (796)
-..++|+-.||-.+.+.-|
T Consensus 240 ~G~k~L~~AllDRFv~I~~dyp 261 (383)
T PHA02244 240 VARNKIDGATLDRFAPIEFDYD 261 (383)
T ss_pred CCCcccCHHHHhhcEEeeCCCC
Confidence 2568888888754333334
No 226
>PRK04195 replication factor C large subunit; Provisional
Probab=97.83 E-value=7.8e-05 Score=86.67 Aligned_cols=85 Identities=9% Similarity=0.119 Sum_probs=57.1
Q ss_pred ChHHHHHHHHHHhh-c----cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHH
Q 003769 192 DSDDVMSVLNALIN-K----KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLV 266 (796)
Q Consensus 192 r~~ei~~vi~~L~r-~----k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~ 266 (796)
.++.+..+.+.+.+ . .++++|+||||+|||++|+.||+.+ +..++.++.+.... .. .+.
T Consensus 19 ~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el----------~~~~ielnasd~r~--~~----~i~ 82 (482)
T PRK04195 19 NEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY----------GWEVIELNASDQRT--AD----VIE 82 (482)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEccccccc--HH----HHH
Confidence 45555555555554 2 6788899999999999999999976 36788888765432 12 233
Q ss_pred HHHHHHHhcc---C-CCEEEEEcchhhhhh
Q 003769 267 ELSCHVKSYM---G-RGIVLYLGDLKWVAE 292 (796)
Q Consensus 267 ~l~~~v~~~~---~-~~~ILfIDElh~l~~ 292 (796)
.++....... + .+.||+|||++.+.+
T Consensus 83 ~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~ 112 (482)
T PRK04195 83 RVAGEAATSGSLFGARRKLILLDEVDGIHG 112 (482)
T ss_pred HHHHHhhccCcccCCCCeEEEEecCccccc
Confidence 3333333210 2 468999999998865
No 227
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.83 E-value=5.8e-05 Score=86.75 Aligned_cols=78 Identities=18% Similarity=0.205 Sum_probs=51.6
Q ss_pred CceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHH-HHHHHHHHHHHHhccCCCEEEEEcc
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEV-EQKLVELSCHVKSYMGRGIVLYLGD 286 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~-E~rl~~l~~~v~~~~~~~~ILfIDE 286 (796)
++.+|+||||+|||+++.+++..+.+.. | +.+++.++...|...+...+ ...+.++.+..+ ...-+|+|||
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~-~----~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~---~~~dvLlIDD 202 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNE-P----DLRVMYITSEKFLNDLVDSMKEGKLNEFREKYR---KKVDVLLIDD 202 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhC-C----CCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHH---hcCCEEEEec
Confidence 5677899999999999999999886532 2 46788888766554221111 112333333333 1356999999
Q ss_pred hhhhhhh
Q 003769 287 LKWVAEF 293 (796)
Q Consensus 287 lh~l~~~ 293 (796)
++.+.+.
T Consensus 203 i~~l~~~ 209 (440)
T PRK14088 203 VQFLIGK 209 (440)
T ss_pred hhhhcCc
Confidence 9998754
No 228
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=0.00016 Score=86.53 Aligned_cols=130 Identities=12% Similarity=0.089 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhh-ccCce-EEEcCCcccHHHHHHHHHHHHHcCC-CCCC-------------CCCceEEEeecccccccc
Q 003769 194 DDVMSVLNALIN-KKRNT-VIVGGNLAAIEGVIRGIIDQFERGQ-VPGD-------------LRYAQFISLPLFSFRNQS 257 (796)
Q Consensus 194 ~ei~~vi~~L~r-~k~n~-vLvGepGvGKTaiv~~la~ri~~~~-vp~~-------------L~~~~v~~l~~~~l~a~~ 257 (796)
.-++.+...+.. +..+. ||+|++|||||++++.|++.+.... +... -....++.+|..+ ...
T Consensus 23 ~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas--~rg 100 (830)
T PRK07003 23 HVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAAS--NRG 100 (830)
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccc--ccc
Confidence 333444444554 44555 7889999999999999999885321 0000 0112467776542 122
Q ss_pred hHHHHHHHHHHHHHHHhcc--CCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEE
Q 003769 258 KGEVEQKLVELSCHVKSYM--GRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWI 335 (796)
Q Consensus 258 rge~E~rl~~l~~~v~~~~--~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~ 335 (796)
..+ ++++++.+.... ++.-|+||||+|+|... +.|.-||.|-. ....+.+
T Consensus 101 VDd----IReLIe~a~~~P~~gr~KVIIIDEah~LT~~---------------------A~NALLKtLEE---PP~~v~F 152 (830)
T PRK07003 101 VDE----MAALLERAVYAPVDARFKVYMIDEVHMLTNH---------------------AFNAMLKTLEE---PPPHVKF 152 (830)
T ss_pred HHH----HHHHHHHHHhccccCCceEEEEeChhhCCHH---------------------HHHHHHHHHHh---cCCCeEE
Confidence 233 444555443210 34579999999999653 23442554431 1467888
Q ss_pred EEecChHHHHHhhhcCccccccc
Q 003769 336 MGIASFQTYTRCKAGHPSLENMW 358 (796)
Q Consensus 336 IGatT~~ey~k~~~~dpaLerrf 358 (796)
|.+||.. .|. -+.+-+|+
T Consensus 153 ILaTtd~--~KI---p~TIrSRC 170 (830)
T PRK07003 153 ILATTDP--QKI---PVTVLSRC 170 (830)
T ss_pred EEEECCh--hhc---cchhhhhe
Confidence 8888753 232 35566664
No 229
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00012 Score=86.47 Aligned_cols=115 Identities=16% Similarity=0.162 Sum_probs=68.8
Q ss_pred HHHHHHHhh-ccCce-EEEcCCcccHHHHHHHHHHHHHcCC------C---CC----------CCCCceEEEeecccccc
Q 003769 197 MSVLNALIN-KKRNT-VIVGGNLAAIEGVIRGIIDQFERGQ------V---PG----------DLRYAQFISLPLFSFRN 255 (796)
Q Consensus 197 ~~vi~~L~r-~k~n~-vLvGepGvGKTaiv~~la~ri~~~~------v---p~----------~L~~~~v~~l~~~~l~a 255 (796)
+.+.+.+.+ +..+. +|+|++|+|||++++.||+.+.... + |- .-+...++.+|.++-
T Consensus 26 ~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~-- 103 (700)
T PRK12323 26 RALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASN-- 103 (700)
T ss_pred HHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEeccccc--
Confidence 334444544 55555 7889999999999999999886411 0 10 001125667765421
Q ss_pred cchHHHHHHHHHHHHHHHhcc--CCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCC-CCc
Q 003769 256 QSKGEVEQKLVELSCHVKSYM--GRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGE-SER 332 (796)
Q Consensus 256 ~~rge~E~rl~~l~~~v~~~~--~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~-~G~ 332 (796)
...++ ++++++.+.... ++.-|+||||+|.|... +.|.-||.|= + .+.
T Consensus 104 ~gVDd----IReLie~~~~~P~~gr~KViIIDEah~Ls~~---------------------AaNALLKTLE----EPP~~ 154 (700)
T PRK12323 104 RGVDE----MAQLLDKAVYAPTAGRFKVYMIDEVHMLTNH---------------------AFNAMLKTLE----EPPEH 154 (700)
T ss_pred CCHHH----HHHHHHHHHhchhcCCceEEEEEChHhcCHH---------------------HHHHHHHhhc----cCCCC
Confidence 12333 445555544211 45679999999999653 3444244332 2 477
Q ss_pred EEEEEecChH
Q 003769 333 VWIMGIASFQ 342 (796)
Q Consensus 333 l~~IGatT~~ 342 (796)
+.+|.+||..
T Consensus 155 v~FILaTtep 164 (700)
T PRK12323 155 VKFILATTDP 164 (700)
T ss_pred ceEEEEeCCh
Confidence 8888888853
No 230
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.81 E-value=2.6e-05 Score=81.96 Aligned_cols=113 Identities=19% Similarity=0.219 Sum_probs=74.5
Q ss_pred hcCCCCCCcchHHHHHHHHHHHhhc------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccc
Q 003769 576 ERKAVVPWQKEIMPEIARTILECRS------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQD 649 (796)
Q Consensus 576 ~~~~~v~gQ~~av~~ia~~i~~~rs------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~ 649 (796)
-.. |+||++|-.. |+-|...-- .-..-..||.||+| +|||-|||+||... +..|+.+.-.+- -+
T Consensus 120 ~dd--ViGqEeAK~k-crli~~yLenPe~Fg~WAPknVLFyGppG--TGKTm~Akalane~----kvp~l~vkat~l-iG 189 (368)
T COG1223 120 LDD--VIGQEEAKRK-CRLIMEYLENPERFGDWAPKNVLFYGPPG--TGKTMMAKALANEA----KVPLLLVKATEL-IG 189 (368)
T ss_pred Hhh--hhchHHHHHH-HHHHHHHhhChHHhcccCcceeEEECCCC--ccHHHHHHHHhccc----CCceEEechHHH-HH
Confidence 355 8999998543 333333311 11123578999999 99999999999765 255777665432 22
Q ss_pred cccccccCCCCCCCCCCchhhHHHHHHhCCCEEEEEcccccCCCCh---------HHHHHHHHHHHH
Q 003769 650 DCRTKKRSRDVELGCCSYIERLGLALNENPHRVFFMEDLDDHKVDS---------CYCQKGLKQAIE 707 (796)
Q Consensus 650 ~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vvl~deieka~~~~---------~~v~~~l~q~~d 707 (796)
+| +| -|+-.+-+|++.-|+---+||||||+|--++|. |++-|.||.-+|
T Consensus 190 eh--------VG-dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelD 247 (368)
T COG1223 190 EH--------VG-DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELD 247 (368)
T ss_pred HH--------hh-hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhcc
Confidence 22 11 122334689999999999999999999654443 456677776664
No 231
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.81 E-value=0.00017 Score=80.53 Aligned_cols=137 Identities=17% Similarity=0.163 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhh--ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEE--eec-------------cccccc
Q 003769 194 DDVMSVLNALIN--KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFIS--LPL-------------FSFRNQ 256 (796)
Q Consensus 194 ~ei~~vi~~L~r--~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~--l~~-------------~~l~a~ 256 (796)
.-..|+|+.|.- +....+|+||||||||++++.|++.+.++. | +..++. ++- ..+++.
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~-~----dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANH-P----EVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhcC-C----CceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 455679999986 778899999999999999999999987651 1 222222 110 111110
Q ss_pred -------chHHHHHHHHHHHHHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC-
Q 003769 257 -------SKGEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG- 328 (796)
Q Consensus 257 -------~rge~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~- 328 (796)
.+-..-.-+.++.+..... +..|||++||++.++.+.... |.+.|.--.+.|.+ .+ -..+++|+..-+
T Consensus 193 t~de~~~~~~~v~~~~~~~Ae~f~~~-GkdVVLvlDsltr~A~A~rei-~~~~G~~~s~G~~~-s~-~~~~~rl~~~A~~ 268 (380)
T PRK12608 193 TFDRPPDEHIRVAELVLERAKRLVEQ-GKDVVILLDSLTRLARAYNNE-VESSGRTLSGGVDA-RA-LQRPKRLFGAARN 268 (380)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEeCcHHHHHHHHhh-hcccCCCCCCCcCh-HH-HhhhHHHHHhcCC
Confidence 1111112223344444443 789999999999999886332 21111100122333 22 223677873221
Q ss_pred --CCCcEEEEEec
Q 003769 329 --ESERVWIMGIA 339 (796)
Q Consensus 329 --~~G~l~~IGat 339 (796)
+.|.|..|.+.
T Consensus 269 ~~~~GSiT~i~Tv 281 (380)
T PRK12608 269 IEEGGSLTIIATA 281 (380)
T ss_pred CCCCcchhheEEE
Confidence 24666665554
No 232
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.80 E-value=9.6e-05 Score=84.75 Aligned_cols=138 Identities=14% Similarity=0.122 Sum_probs=91.4
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCC-
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD- 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~- 659 (796)
++|+..++..+.+.+.+.. .....+|+.|++| +||+.+|+.+...-.... ..|+.+|++... +....+.+.|.
T Consensus 145 ii~~S~~~~~~~~~~~~~a--~~~~~vli~Ge~G--tGK~~lA~~ih~~s~~~~-~~~~~i~c~~~~-~~~~~~~lfg~~ 218 (457)
T PRK11361 145 ILTNSPAMMDICKDTAKIA--LSQASVLISGESG--TGKELIARAIHYNSRRAK-GPFIKVNCAALP-ESLLESELFGHE 218 (457)
T ss_pred eecccHHHhHHHHHHHHHc--CCCcEEEEEcCCC--ccHHHHHHHHHHhCCCCC-CCeEEEECCCCC-HHHHHHHhcCCC
Confidence 6777777777766655443 3446788999999 999999999988776666 789999998652 22111111111
Q ss_pred -CCCCCCC--chhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCC
Q 003769 660 -VELGCCS--YIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 660 -~~~~~~~--~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn 731 (796)
..+.|.. ..+. +..--..+++|||||+. ++ .+|+-|++++++|.++--.|.+.--.|+-||+||+
T Consensus 219 ~~~~~~~~~~~~g~----~~~a~~gtl~ld~i~~l--~~-~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~ 286 (457)
T PRK11361 219 KGAFTGAQTLRQGL----FERANEGTLLLDEIGEM--PL-VLQAKLLRILQEREFERIGGHQTIKVDIRIIAATN 286 (457)
T ss_pred CCCCCCCCCCCCCc----eEECCCCEEEEechhhC--CH-HHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCC
Confidence 0111110 0111 22233578999999999 99 99999999999998774333222223566888886
No 233
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.80 E-value=5e-05 Score=78.59 Aligned_cols=97 Identities=11% Similarity=0.152 Sum_probs=64.1
Q ss_pred cchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCC
Q 003769 584 QKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELG 663 (796)
Q Consensus 584 Q~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~ 663 (796)
++.++..+.+.+. .+...+++|.||+| +|||.+|+.+++..+... ..++.++++... ...
T Consensus 22 ~~~~~~~l~~~~~----~~~~~~lll~G~~G--~GKT~la~~~~~~~~~~~-~~~~~i~~~~~~-~~~------------ 81 (226)
T TIGR03420 22 NAELLAALRQLAA----GKGDRFLYLWGESG--SGKSHLLQAACAAAEERG-KSAIYLPLAELA-QAD------------ 81 (226)
T ss_pred cHHHHHHHHHHHh----cCCCCeEEEECCCC--CCHHHHHHHHHHHHHhcC-CcEEEEeHHHHH-HhH------------
Confidence 4444444443322 34567999999999 999999999999988655 678888876542 110
Q ss_pred CCCchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHc
Q 003769 664 CCSYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIEN 708 (796)
Q Consensus 664 ~~~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~ 708 (796)
..+.+.+. .+.||+||||+..+.+. ..+..|.++++.
T Consensus 82 -----~~~~~~~~--~~~lLvIDdi~~l~~~~-~~~~~L~~~l~~ 118 (226)
T TIGR03420 82 -----PEVLEGLE--QADLVCLDDVEAIAGQP-EWQEALFHLYNR 118 (226)
T ss_pred -----HHHHhhcc--cCCEEEEeChhhhcCCh-HHHHHHHHHHHH
Confidence 11222222 24699999999983333 347788888864
No 234
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.80 E-value=7e-05 Score=85.78 Aligned_cols=125 Identities=16% Similarity=0.235 Sum_probs=80.8
Q ss_pred CCCcchHHHHHHHHHHHh-hc---------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCcccc
Q 003769 581 VPWQKEIMPEIARTILEC-RS---------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDD 650 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~-rs---------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~ 650 (796)
|.|.++.+..|..+|..- .. ..|.+ +||.||+| +|||.+||++|..+ + ..|++++.++.. .
T Consensus 185 IgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~g-VLL~GPPG--TGKT~LAraIA~el-~---~~fi~V~~seL~-~- 255 (438)
T PTZ00361 185 IGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKG-VILYGPPG--TGKTLLAKAVANET-S---ATFLRVVGSELI-Q- 255 (438)
T ss_pred hcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcE-EEEECCCC--CCHHHHHHHHHHhh-C---CCEEEEecchhh-h-
Confidence 578888888888888532 11 34445 56789999 99999999999987 2 458888776431 1
Q ss_pred ccccccCCCCCCCCCC--chhhHHHHHHhCCCEEEEEcccccCC---------CChHHHHHHHHHHHHc--ceEecCCCc
Q 003769 651 CRTKKRSRDVELGCCS--YIERLGLALNENPHRVFFMEDLDDHK---------VDSCYCQKGLKQAIEN--GCIALADGE 717 (796)
Q Consensus 651 ~~~~k~~~~~~~~~~~--~~~~L~eavr~~P~~Vvl~deieka~---------~~~~~v~~~l~q~~d~--G~l~d~~G~ 717 (796)
+ |.|.+ .+..+.+..+.+-.+||||||||... -+. .++..+++.+.. |..
T Consensus 256 ----k------~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~-e~qr~ll~LL~~Ldg~~------ 318 (438)
T PTZ00361 256 ----K------YLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEK-EIQRTMLELLNQLDGFD------ 318 (438)
T ss_pred ----h------hcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccH-HHHHHHHHHHHHHhhhc------
Confidence 1 22222 23455666666777899999998531 123 455555555532 211
Q ss_pred eecCCcEEEEeeCCCC
Q 003769 718 IVPLKDSIIIFSCDSL 733 (796)
Q Consensus 718 ~v~~~n~IiilTsn~~ 733 (796)
.-.+.+||+|||..
T Consensus 319 --~~~~V~VI~ATNr~ 332 (438)
T PTZ00361 319 --SRGDVKVIMATNRI 332 (438)
T ss_pred --ccCCeEEEEecCCh
Confidence 11367899999864
No 235
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=5e-05 Score=89.32 Aligned_cols=73 Identities=14% Similarity=0.172 Sum_probs=57.2
Q ss_pred CceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc---------cchHHHHHHHHHHHHHHHhccCC
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN---------QSKGEVEQKLVELSCHVKSYMGR 278 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a---------~~rge~E~rl~~l~~~v~~~~~~ 278 (796)
.=.|||||||||||++++.+|+.+ |++|+.++++-+.. -|.|-+--|+-+-++.+.. .
T Consensus 351 pILcLVGPPGVGKTSLgkSIA~al----------~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~---~ 417 (782)
T COG0466 351 PILCLVGPPGVGKTSLGKSIAKAL----------GRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGV---K 417 (782)
T ss_pred cEEEEECCCCCCchhHHHHHHHHh----------CCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCC---c
Confidence 345589999999999999999986 57899999987754 2667777777766666664 4
Q ss_pred CEEEEEcchhhhhhh
Q 003769 279 GIVLYLGDLKWVAEF 293 (796)
Q Consensus 279 ~~ILfIDElh~l~~~ 293 (796)
+-++.||||+.+...
T Consensus 418 NPv~LLDEIDKm~ss 432 (782)
T COG0466 418 NPVFLLDEIDKMGSS 432 (782)
T ss_pred CCeEEeechhhccCC
Confidence 567889999998654
No 236
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=97.79 E-value=4.3e-05 Score=78.75 Aligned_cols=134 Identities=16% Similarity=0.223 Sum_probs=77.4
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCcccccccc------
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTK------ 654 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~------ 654 (796)
|+||++|..++--+.. . ..-+||.||.| +|||.+|+.|+.+|=. +..-.+-+.. .-+++.
T Consensus 5 I~GQe~aKrAL~iAAa----G--~h~lLl~GppG--tGKTmlA~~l~~lLP~-----l~~~e~le~~-~i~s~~~~~~~~ 70 (206)
T PF01078_consen 5 IVGQEEAKRALEIAAA----G--GHHLLLIGPPG--TGKTMLARRLPSLLPP-----LTEEEALEVS-KIYSVAGLGPDE 70 (206)
T ss_dssp SSSTHHHHHHHHHHHH----C--C--EEEES-CC--CTHHHHHHHHHHCS-------CCEECCESS---S-TT---S---
T ss_pred hcCcHHHHHHHHHHHc----C--CCCeEEECCCC--CCHHHHHHHHHHhCCC-----CchHHHhhhc-cccccccCCCCC
Confidence 8999988776654443 2 35899999999 9999999999988732 2222221110 000000
Q ss_pred ccCCCCCCC------------CCCchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCC-CceecC
Q 003769 655 KRSRDVELG------------CCSYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALAD-GEIVPL 721 (796)
Q Consensus 655 k~~~~~~~~------------~~~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~-G~~v~~ 721 (796)
..+..++|. |++.. ----.|..--+-|++|||+=.- ++ .+.+.|+|.+++|+++-.. |..+.|
T Consensus 71 ~~~~~~Pfr~phhs~s~~~liGgg~~-~~PGeislAh~GVLflDE~~ef--~~-~vld~Lr~ple~g~v~i~R~~~~~~~ 146 (206)
T PF01078_consen 71 GLIRQRPFRAPHHSASEAALIGGGRP-PRPGEISLAHRGVLFLDELNEF--DR-SVLDALRQPLEDGEVTISRAGGSVTY 146 (206)
T ss_dssp EEEE---EEEE-TT--HHHHHEEGGG-EEE-CGGGGTTSEEEECETTTS---H-HHHHHHHHHHHHSBEEEEETTEEEEE
T ss_pred ceecCCCcccCCCCcCHHHHhCCCcC-CCcCHHHHhcCCEEEechhhhc--CH-HHHHHHHHHHHCCeEEEEECCceEEE
Confidence 000111111 11100 0001233345679999999999 99 9999999999999998643 555554
Q ss_pred -CcEEEEeeCCC
Q 003769 722 -KDSIIIFSCDS 732 (796)
Q Consensus 722 -~n~IiilTsn~ 732 (796)
-|.++|.|.|-
T Consensus 147 Pa~f~lv~a~NP 158 (206)
T PF01078_consen 147 PARFLLVAAMNP 158 (206)
T ss_dssp B--EEEEEEE-S
T ss_pred ecccEEEEEecc
Confidence 37788999884
No 237
>PF13173 AAA_14: AAA domain
Probab=97.79 E-value=9e-05 Score=70.48 Aligned_cols=112 Identities=11% Similarity=0.161 Sum_probs=66.1
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEcc
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLGD 286 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfIDE 286 (796)
++.++|.|+.|||||++++.+++... ...+++.+|+.........+.+ +.+.+..... .++.+|||||
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~--------~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~i~iDE 69 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL--------PPENILYINFDDPRDRRLADPD--LLEYFLELIK--PGKKYIFIDE 69 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc--------ccccceeeccCCHHHHHHhhhh--hHHHHHHhhc--cCCcEEEEeh
Confidence 45678899999999999999998764 1346777776544331111111 2222222211 3578999999
Q ss_pred hhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCC-cEEEEEecChHHHHHhhhcCccccccc
Q 003769 287 LKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESE-RVWIMGIASFQTYTRCKAGHPSLENMW 358 (796)
Q Consensus 287 lh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G-~l~~IGatT~~ey~k~~~~dpaLerrf 358 (796)
+|.+-.. .+. +|.+.. ++ .+.+|-+++......- +....|..|+
T Consensus 70 iq~~~~~-------------------~~~----lk~l~d----~~~~~~ii~tgS~~~~l~~-~~~~~l~gr~ 114 (128)
T PF13173_consen 70 IQYLPDW-------------------EDA----LKFLVD----NGPNIKIILTGSSSSLLSK-DIAESLAGRV 114 (128)
T ss_pred hhhhccH-------------------HHH----HHHHHH----hccCceEEEEccchHHHhh-cccccCCCeE
Confidence 9987432 112 666763 33 4666666665444422 4455666664
No 238
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.79 E-value=4.8e-05 Score=92.73 Aligned_cols=59 Identities=15% Similarity=0.341 Sum_probs=54.0
Q ss_pred ccHHHHHHHHHHHHHHHhccchhhhhhhcccccccccCHHHHHHHHhcCChHHHHHHHcCCChHHHHHHHHh
Q 003769 103 LSNALVAAFKRAQAHQRRGSIENQQQQQQQPVLALKIEVEQLVISILDDPSVSRVMREAGFSSSQVKIKVEE 174 (796)
Q Consensus 103 ~S~~l~~aL~~A~~~a~~~~lg~~~~~~~~~~l~~kI~~eHLLLALL~d~~~a~vL~~~Gis~~~l~~~v~~ 174 (796)
||+.+..+|..|..+|++ ++|.| |+++|||+|||+++.+.++|+.+|++.+.+++.+..
T Consensus 1 ~~~~a~~~L~~A~~~A~~--~~h~~-----------V~~EHLLlaLL~~~~~~~iL~~~gid~~~l~~~l~~ 59 (731)
T TIGR02639 1 ISEELERILDAALEEAKK--RRHEF-----------VTLEHILLALLFDSDAIEILEECGGDVEALRKDLED 59 (731)
T ss_pred CCHHHHHHHHHHHHHHHH--hCCCc-----------CcHHHHHHHHHcCchHHHHHHHcCCCHHHHHHHHHH
Confidence 578999999999999998 89999 999999999999887889999999999999888763
No 239
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.78 E-value=8.6e-05 Score=85.35 Aligned_cols=140 Identities=17% Similarity=0.182 Sum_probs=93.7
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCC-
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD- 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~- 659 (796)
++|...++..+.+.+.+. +.. ....++.|.+| +||+.+|+.+.+.-+... ..|+.+|++... ++.-.+.+-|.
T Consensus 136 lig~s~~~~~v~~~i~~~-a~~-~~~vli~Ge~G--tGK~~~A~~ih~~~~~~~-~~~~~~~c~~~~-~~~~~~~lfg~~ 209 (463)
T TIGR01818 136 LIGEAPAMQEVFRAIGRL-SRS-DITVLINGESG--TGKELVARALHRHSPRAN-GPFIALNMAAIP-KDLIESELFGHE 209 (463)
T ss_pred eeecCHHHHHHHHHHHHH-hCc-CCeEEEECCCC--CCHHHHHHHHHHhCCCCC-CCeEEEeCCCCC-HHHHHHHhcCCC
Confidence 677777777887777652 233 34678999999 999999999999988777 899999998552 21111111111
Q ss_pred C-CCCCCCchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCC
Q 003769 660 V-ELGCCSYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 660 ~-~~~~~~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn 731 (796)
. .|.|.. ..-...+..-....++||||+.. ++ .+|.-|++.+++|.++...|...--.|+-||+||+
T Consensus 210 ~~~~~~~~--~~~~g~~~~a~~gtl~l~ei~~l--~~-~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~ 277 (463)
T TIGR01818 210 KGAFTGAN--TRRQGRFEQADGGTLFLDEIGDM--PL-DAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATH 277 (463)
T ss_pred CCCCCCcc--cCCCCcEEECCCCeEEEEchhhC--CH-HHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCC
Confidence 0 111110 00001122223467999999999 99 99999999999999887555443334666888886
No 240
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.78 E-value=0.0001 Score=82.07 Aligned_cols=142 Identities=12% Similarity=0.043 Sum_probs=84.1
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCC-----CceEEecCCCCccccccc--
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHS-----NNFTNLSSSQSRQDDCRT-- 653 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~-----~~~i~~dms~~~~~~~~~-- 653 (796)
++|.++-+..|...+..+-......++++.||+| +|||.+++++++.+-.... -.++.+++........-.
T Consensus 17 l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~G--tGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 17 IVHRDEQIEELAKALRPILRGSRPSNVFIYGKTG--TGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCC--CCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 8999999999999988765544446789999999 9999999999988743220 146778876542211100
Q ss_pred --cccC--CC-CCCCCCCc---hhhHHHHHH-hCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcE
Q 003769 654 --KKRS--RD-VELGCCSY---IERLGLALN-ENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDS 724 (796)
Q Consensus 654 --~k~~--~~-~~~~~~~~---~~~L~eavr-~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~ 724 (796)
..+. +. ....|.+. ...+.+.+. .++..||+|||+|.. .. ....+|.+.++-..... ..-.+.
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L--~~-~~~~~L~~l~~~~~~~~-----~~~~~v 166 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL--VG-DDDDLLYQLSRARSNGD-----LDNAKV 166 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh--cc-CCcHHHHhHhccccccC-----CCCCeE
Confidence 0110 10 11112222 134555555 356778999999988 43 33334555442211111 122466
Q ss_pred EEEeeCCC
Q 003769 725 IIIFSCDS 732 (796)
Q Consensus 725 IiilTsn~ 732 (796)
++|+.+|.
T Consensus 167 ~lI~i~n~ 174 (365)
T TIGR02928 167 GVIGISND 174 (365)
T ss_pred EEEEEECC
Confidence 77777764
No 241
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00023 Score=83.27 Aligned_cols=92 Identities=14% Similarity=0.109 Sum_probs=55.8
Q ss_pred HHHHHHHHhh-ccCce-EEEcCCcccHHHHHHHHHHHHHcCCCCC--------------CCCCceEEEeecccccccchH
Q 003769 196 VMSVLNALIN-KKRNT-VIVGGNLAAIEGVIRGIIDQFERGQVPG--------------DLRYAQFISLPLFSFRNQSKG 259 (796)
Q Consensus 196 i~~vi~~L~r-~k~n~-vLvGepGvGKTaiv~~la~ri~~~~vp~--------------~L~~~~v~~l~~~~l~a~~rg 259 (796)
++.+...+.. +..+. +|.||||||||++++.+|+.+....-+. .-+...|+.+|.++- ....
T Consensus 25 ~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~--~~v~ 102 (509)
T PRK14958 25 VRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASR--TKVE 102 (509)
T ss_pred HHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEccccc--CCHH
Confidence 3444444545 55564 7889999999999999999885322111 011224777775421 1222
Q ss_pred HHHHHHHHHHHHHHhcc--CCCEEEEEcchhhhhhh
Q 003769 260 EVEQKLVELSCHVKSYM--GRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 260 e~E~rl~~l~~~v~~~~--~~~~ILfIDElh~l~~~ 293 (796)
+ ++++++.+.... ++.-|+||||+|.|...
T Consensus 103 ~----iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~ 134 (509)
T PRK14958 103 D----TRELLDNIPYAPTKGRFKVYLIDEVHMLSGH 134 (509)
T ss_pred H----HHHHHHHHhhccccCCcEEEEEEChHhcCHH
Confidence 2 455555554321 34569999999999754
No 242
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.76 E-value=8.2e-05 Score=85.75 Aligned_cols=76 Identities=9% Similarity=0.132 Sum_probs=52.5
Q ss_pred CceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHH---HHHHHHHHHHhccCCCEEEEE
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQ---KLVELSCHVKSYMGRGIVLYL 284 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~---rl~~l~~~v~~~~~~~~ILfI 284 (796)
+.++|+|++|+|||+++++++..+.... .+.+++.++...|...+...+.. .+.++.+.++ ...+|+|
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~-----~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~----~~dvLiI 212 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNF-----SDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEIC----QNDVLII 212 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhC-----CCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhc----cCCEEEE
Confidence 3455899999999999999999876432 25788888887776644433332 2333333333 3469999
Q ss_pred cchhhhhh
Q 003769 285 GDLKWVAE 292 (796)
Q Consensus 285 DElh~l~~ 292 (796)
||+|.+.+
T Consensus 213 DDiq~l~~ 220 (450)
T PRK14087 213 DDVQFLSY 220 (450)
T ss_pred eccccccC
Confidence 99998864
No 243
>PRK06893 DNA replication initiation factor; Validated
Probab=97.76 E-value=0.0001 Score=77.37 Aligned_cols=98 Identities=11% Similarity=0.187 Sum_probs=61.1
Q ss_pred CCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCE
Q 003769 602 KEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHR 681 (796)
Q Consensus 602 ~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~ 681 (796)
....+|+|.||+| +|||.|+.++|..+.... ...+.+.++... . +...+.+.+ ..+.
T Consensus 37 ~~~~~l~l~G~~G--~GKThL~~ai~~~~~~~~-~~~~y~~~~~~~--~----------------~~~~~~~~~--~~~d 93 (229)
T PRK06893 37 LQQPFFYIWGGKS--SGKSHLLKAVSNHYLLNQ-RTAIYIPLSKSQ--Y----------------FSPAVLENL--EQQD 93 (229)
T ss_pred cCCCeEEEECCCC--CCHHHHHHHHHHHHHHcC-CCeEEeeHHHhh--h----------------hhHHHHhhc--ccCC
Confidence 3445899999999 999999999999886544 444555553210 0 001122222 2457
Q ss_pred EEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 682 VFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 682 Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
+++||||+.-.-++ .....|++.|+.-+ + + +..|||+|+|.
T Consensus 94 lLilDDi~~~~~~~-~~~~~l~~l~n~~~--~-~------~~~illits~~ 134 (229)
T PRK06893 94 LVCLDDLQAVIGNE-EWELAIFDLFNRIK--E-Q------GKTLLLISADC 134 (229)
T ss_pred EEEEeChhhhcCCh-HHHHHHHHHHHHHH--H-c------CCcEEEEeCCC
Confidence 99999999752244 55556777776432 1 1 34567888874
No 244
>PRK06921 hypothetical protein; Provisional
Probab=97.75 E-value=9.4e-05 Score=79.55 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=49.6
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEcc
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLGD 286 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfIDE 286 (796)
.+|++|+|+||+|||+++.++|..+.+. .+..++.++...+....+..+ ..+.+.++.+.. --+|+|||
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~------~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~~~----~dlLiIDD 185 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRK------KGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRMKK----VEVLFIDD 185 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhh------cCceEEEEEHHHHHHHHHHHH-HHHHHHHHHhcC----CCEEEEec
Confidence 5789999999999999999999987642 156777777666555333323 223334444443 46999999
Q ss_pred hhh
Q 003769 287 LKW 289 (796)
Q Consensus 287 lh~ 289 (796)
|+.
T Consensus 186 l~~ 188 (266)
T PRK06921 186 LFK 188 (266)
T ss_pred ccc
Confidence 965
No 245
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=97.74 E-value=0.00016 Score=84.88 Aligned_cols=140 Identities=14% Similarity=0.165 Sum_probs=91.4
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDV 660 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~ 660 (796)
++|+..++..+-+.+.+.- +...++|+.|.+| +||+.+|+.|-..-.... ..|+.+|++... +..--+-+-|..
T Consensus 214 iiG~S~~m~~~~~~i~~~A--~~~~pVLI~GE~G--TGKe~lA~~IH~~S~r~~-~pfv~inC~~l~-e~lleseLFG~~ 287 (526)
T TIGR02329 214 LLGASAPMEQVRALVRLYA--RSDATVLILGESG--TGKELVAQAIHQLSGRRD-FPFVAINCGAIA-ESLLEAELFGYE 287 (526)
T ss_pred eeeCCHHHHHHHHHHHHHh--CCCCcEEEECCCC--cCHHHHHHHHHHhcCcCC-CCEEEeccccCC-hhHHHHHhcCCc
Confidence 7899999988888776543 3446899999999 999999999987765555 789999998652 221111111211
Q ss_pred --CCCCCCchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCC-ceecCCcEEEEeeCC
Q 003769 661 --ELGCCSYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADG-EIVPLKDSIIIFSCD 731 (796)
Q Consensus 661 --~~~~~~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G-~~v~~~n~IiilTsn 731 (796)
.|.|..-.+. ...+..--...+|||||+.. .+ .+|.-|++++++|.++--.| +.+.+ |+=||.||+
T Consensus 288 ~gaftga~~~~~-~Gl~e~A~gGTLfLdeI~~L--p~-~~Q~~Ll~~L~~~~~~r~g~~~~~~~-dvRiIaat~ 356 (526)
T TIGR02329 288 EGAFTGARRGGR-TGLIEAAHRGTLFLDEIGEM--PL-PLQTRLLRVLEEREVVRVGGTEPVPV-DVRVVAATH 356 (526)
T ss_pred cccccccccccc-ccchhhcCCceEEecChHhC--CH-HHHHHHHHHHhcCcEEecCCCceeee-cceEEeccC
Confidence 1112110000 00111222568999999999 99 99999999999998875333 22222 344777665
No 246
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.74 E-value=0.00015 Score=86.58 Aligned_cols=122 Identities=14% Similarity=0.157 Sum_probs=76.2
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcC-------CCCCceEEecCCCCccccccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFG-------SHSNNFTNLSSSQSRQDDCRT 653 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg-------~~~~~~i~~dms~~~~~~~~~ 653 (796)
++||+.++..+.+.+. +..+ ..++|.||+| +|||.+|+.++..... .. ..|+.+|.+....+....
T Consensus 156 iiGqs~~~~~l~~~ia---~~~~-~~vlL~Gp~G--tGKTTLAr~i~~~~~~~~~~~~~~~-~~fv~i~~~~l~~d~~~i 228 (615)
T TIGR02903 156 IVGQERAIKALLAKVA---SPFP-QHIILYGPPG--VGKTTAARLALEEAKKLKHTPFAED-APFVEVDGTTLRWDPREV 228 (615)
T ss_pred ceeCcHHHHHHHHHHh---cCCC-CeEEEECCCC--CCHHHHHHHHHHhhhhccCCcccCC-CCeEEEechhccCCHHHH
Confidence 6899999998765552 2333 4688999999 9999999999987731 23 568999986442111000
Q ss_pred -cccCCC---CCCCCC-------CchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEe
Q 003769 654 -KKRSRD---VELGCC-------SYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIA 712 (796)
Q Consensus 654 -~k~~~~---~~~~~~-------~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~ 712 (796)
....+. +.+.+. +..+.....+.+-...|+||||++.. ++ ..++.|++.+++|++.
T Consensus 229 ~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L--d~-~~Q~~Ll~~Le~~~v~ 295 (615)
T TIGR02903 229 TNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL--DP-LLQNKLLKVLEDKRVE 295 (615)
T ss_pred hHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC--CH-HHHHHHHHHHhhCeEE
Confidence 000010 000000 00000011122333569999999999 99 9999999999999854
No 247
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.73 E-value=5.7e-05 Score=80.23 Aligned_cols=73 Identities=7% Similarity=0.036 Sum_probs=53.9
Q ss_pred CceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHH---HHHHHHHHHHHhccCCCEEEEE
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVE---QKLVELSCHVKSYMGRGIVLYL 284 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E---~rl~~l~~~v~~~~~~~~ILfI 284 (796)
.+++|.|+||||||+++.+++..+... +..++.+++..+....++.+. ....++++.+.. .-+|+|
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~-------g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~----~dlLvI 168 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLR-------GKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSN----VDLLVI 168 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhcc----CCEEEE
Confidence 578999999999999999999988653 578888888877765444432 223455566553 359999
Q ss_pred cchhhhh
Q 003769 285 GDLKWVA 291 (796)
Q Consensus 285 DElh~l~ 291 (796)
||++...
T Consensus 169 DDig~~~ 175 (244)
T PRK07952 169 DEIGVQT 175 (244)
T ss_pred eCCCCCC
Confidence 9997653
No 248
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00014 Score=79.83 Aligned_cols=108 Identities=19% Similarity=0.272 Sum_probs=80.3
Q ss_pred cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCC--CchhhHHHHHHhC
Q 003769 601 KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCC--SYIERLGLALNEN 678 (796)
Q Consensus 601 ~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~--~~~~~L~eavr~~ 678 (796)
..|-|.+ +.||+| +|||-||||.|..- . ..|||+-.|+. +-| |.|- -.+-.|.+.-|++
T Consensus 183 ~PPKGVL-LYGPPG--TGKTLLAkAVA~~T---~-AtFIrvvgSEl------VqK------YiGEGaRlVRelF~lArek 243 (406)
T COG1222 183 DPPKGVL-LYGPPG--TGKTLLAKAVANQT---D-ATFIRVVGSEL------VQK------YIGEGARLVRELFELAREK 243 (406)
T ss_pred CCCCceE-eeCCCC--CcHHHHHHHHHhcc---C-ceEEEeccHHH------HHH------HhccchHHHHHHHHHHhhc
Confidence 4555655 899999 99999999999876 2 67999988765 122 3333 3456788999999
Q ss_pred CCEEEEEccccc---------CCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCCCC
Q 003769 679 PHRVFFMEDLDD---------HKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDSLD 734 (796)
Q Consensus 679 P~~Vvl~deiek---------a~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~~~ 734 (796)
-=|+|||||||- .+-|. +||..++|.+.+= +|= =+..|.=|||.+|-+|
T Consensus 244 aPsIIFiDEIDAIg~kR~d~~t~gDr-EVQRTmleLL~ql-----DGF-D~~~nvKVI~ATNR~D 301 (406)
T COG1222 244 APSIIFIDEIDAIGAKRFDSGTSGDR-EVQRTMLELLNQL-----DGF-DPRGNVKVIMATNRPD 301 (406)
T ss_pred CCeEEEEechhhhhcccccCCCCchH-HHHHHHHHHHHhc-----cCC-CCCCCeEEEEecCCcc
Confidence 999999999982 13388 9999999998641 220 0146777999999754
No 249
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=97.71 E-value=0.0002 Score=84.08 Aligned_cols=137 Identities=18% Similarity=0.201 Sum_probs=91.7
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHc--------CCCCCceEEecCCCCcccccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVF--------GSHSNNFTNLSSSQSRQDDCR 652 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~f--------g~~~~~~i~~dms~~~~~~~~ 652 (796)
++|+..++..+-+.+.+.- +....+|+.|++| +||+.+|+.|-..++ ... ..|+.+|++... +..-
T Consensus 221 iiG~S~~m~~~~~~i~~~A--~s~~pVLI~GE~G--TGKe~~A~~IH~~~~~~~~~~S~r~~-~pfv~inCaal~-e~ll 294 (538)
T PRK15424 221 LLGQSPQMEQVRQTILLYA--RSSAAVLIQGETG--TGKELAAQAIHREYFARHDARQGKKS-HPFVAVNCGAIA-ESLL 294 (538)
T ss_pred eeeCCHHHHHHHHHHHHHh--CCCCcEEEECCCC--CCHHHHHHHHHHhhcccccccCccCC-CCeEEeecccCC-hhhH
Confidence 7999999998888887543 3446889999999 999999999998743 234 689999998652 2211
Q ss_pred ccccCCCC--CCCCCC---chhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCC-ceecCCcEEE
Q 003769 653 TKKRSRDV--ELGCCS---YIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADG-EIVPLKDSII 726 (796)
Q Consensus 653 ~~k~~~~~--~~~~~~---~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G-~~v~~~n~Ii 726 (796)
-+.+-|+. .|.|.. -.| +. ..--...+|||||+.. .+ .+|.-|++++++|.++--.| +.+.+ |+-|
T Consensus 295 eseLFG~~~gaftga~~~~~~G-l~---e~A~gGTLfLdeI~~L--p~-~~Q~kLl~~L~e~~~~r~G~~~~~~~-dvRi 366 (538)
T PRK15424 295 EAELFGYEEGAFTGSRRGGRAG-LF---EIAHGGTLFLDEIGEM--PL-PLQTRLLRVLEEKEVTRVGGHQPVPV-DVRV 366 (538)
T ss_pred HHHhcCCccccccCccccccCC-ch---hccCCCEEEEcChHhC--CH-HHHHHHHhhhhcCeEEecCCCceecc-ceEE
Confidence 11122211 111210 001 11 1223568999999999 99 99999999999999875333 22322 3447
Q ss_pred EeeCC
Q 003769 727 IFSCD 731 (796)
Q Consensus 727 ilTsn 731 (796)
|.+||
T Consensus 367 Iaat~ 371 (538)
T PRK15424 367 ISATH 371 (538)
T ss_pred EEecC
Confidence 77765
No 250
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.71 E-value=0.00022 Score=79.24 Aligned_cols=130 Identities=12% Similarity=0.193 Sum_probs=86.4
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCC------cccccccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQS------RQDDCRTK 654 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~------~~~~~~~~ 654 (796)
.|||..+-..+.+++..-| -.-.+||.||.| +||+.+|+++|+.++......-. .+... ..+.|.-.
T Consensus 4 yPWl~~~~~~l~~~~~~~r---l~HA~Lf~G~~G--~Gk~~lA~~~A~~LlC~~~~~~~--~Cg~C~sC~~~~~g~HPD~ 76 (334)
T PRK07993 4 YPWLRPDYEQLVGSYQAGR---GHHALLIQALPG--MGDDALIYALSRWLMCQQPQGHK--SCGHCRGCQLMQAGTHPDY 76 (334)
T ss_pred CCCChHHHHHHHHHHHcCC---cceEEeeECCCC--CCHHHHHHHHHHHHcCCCCCCCC--CCCCCHHHHHHHcCCCCCE
Confidence 6999999988888776544 344778999999 99999999999999985411110 11100 01122111
Q ss_pred ccCCCCCC----CCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEE
Q 003769 655 KRSRDVEL----GCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSII 726 (796)
Q Consensus 655 k~~~~~~~----~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~Ii 726 (796)
..+ .|.. .+-+.+..|.+.+...| |+|++||+.|+. .. .-.|.||..+|+= =.+|+|
T Consensus 77 ~~i-~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m--~~-~AaNaLLKtLEEP-----------p~~t~f 141 (334)
T PRK07993 77 YTL-TPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALL--TD-AAANALLKTLEEP-----------PENTWF 141 (334)
T ss_pred EEE-ecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhh--CH-HHHHHHHHHhcCC-----------CCCeEE
Confidence 111 1110 11122345666666554 679999999999 99 9999999999862 268899
Q ss_pred EeeCCC
Q 003769 727 IFSCDS 732 (796)
Q Consensus 727 ilTsn~ 732 (796)
||+|+.
T Consensus 142 iL~t~~ 147 (334)
T PRK07993 142 FLACRE 147 (334)
T ss_pred EEEECC
Confidence 998864
No 251
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.69 E-value=7.1e-05 Score=82.70 Aligned_cols=134 Identities=11% Similarity=0.059 Sum_probs=80.0
Q ss_pred ChHHHHHHHHHHhhccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc----cchHHHHHHHHH
Q 003769 192 DSDDVMSVLNALINKKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN----QSKGEVEQKLVE 267 (796)
Q Consensus 192 r~~ei~~vi~~L~r~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a----~~rge~E~rl~~ 267 (796)
+++.+..++..+. .+.+++|.|+||||||.+|+.+|..+. ..++.+.+..-.. -+.-.+..+.++
T Consensus 29 ~~~~~~~~l~a~~-~~~~vll~G~PG~gKT~la~~lA~~l~----------~~~~~i~~t~~l~p~d~~G~~~~~~~~~~ 97 (329)
T COG0714 29 DEEVIELALLALL-AGGHVLLEGPPGVGKTLLARALARALG----------LPFVRIQCTPDLLPSDLLGTYAYAALLLE 97 (329)
T ss_pred cHHHHHHHHHHHH-cCCCEEEECCCCccHHHHHHHHHHHhC----------CCeEEEecCCCCCHHHhcCchhHhhhhcc
Confidence 6677777666666 689999999999999999999999873 4566666543332 122223333221
Q ss_pred --HHHHHHhccCCC--EEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhh----cCC-C-----CcE
Q 003769 268 --LSCHVKSYMGRG--IVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFE----IGE-S-----ERV 333 (796)
Q Consensus 268 --l~~~v~~~~~~~--~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~----~~~-~-----G~l 333 (796)
.+..+.-.--.. +|||+|||...-+. .-|. |-.++.. ++. + ..+
T Consensus 98 ~~~~~~~~gpl~~~~~~ill~DEInra~p~---------------------~q~a-Ll~~l~e~~vtv~~~~~~~~~~~f 155 (329)
T COG0714 98 PGEFRFVPGPLFAAVRVILLLDEINRAPPE---------------------VQNA-LLEALEERQVTVPGLTTIRLPPPF 155 (329)
T ss_pred CCeEEEecCCcccccceEEEEeccccCCHH---------------------HHHH-HHHHHhCcEEEECCcCCcCCCCCC
Confidence 111111000012 39999999765432 2222 3322211 111 2 447
Q ss_pred EEEEecChHHHHHhhhcCccccccc
Q 003769 334 WIMGIASFQTYTRCKAGHPSLENMW 358 (796)
Q Consensus 334 ~~IGatT~~ey~k~~~~dpaLerrf 358 (796)
.+|++.++-+|.--.....|+-+||
T Consensus 156 ~viaT~Np~e~~g~~~l~eA~ldRf 180 (329)
T COG0714 156 IVIATQNPGEYEGTYPLPEALLDRF 180 (329)
T ss_pred EEEEccCccccCCCcCCCHHHHhhE
Confidence 7888878888876666788898998
No 252
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.69 E-value=0.00037 Score=83.26 Aligned_cols=113 Identities=18% Similarity=0.137 Sum_probs=66.5
Q ss_pred HHHHHHhh-ccCce-EEEcCCcccHHHHHHHHHHHHHcCCC----CC----------CCCCceEEEeecccccccchHHH
Q 003769 198 SVLNALIN-KKRNT-VIVGGNLAAIEGVIRGIIDQFERGQV----PG----------DLRYAQFISLPLFSFRNQSKGEV 261 (796)
Q Consensus 198 ~vi~~L~r-~k~n~-vLvGepGvGKTaiv~~la~ri~~~~v----p~----------~L~~~~v~~l~~~~l~a~~rge~ 261 (796)
.+...+.. +-.+. +|+|++|||||++++.+|+.+..... |- .-+...++.+|.++- ....
T Consensus 27 ~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~--~~Vd-- 102 (647)
T PRK07994 27 ALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASR--TKVE-- 102 (647)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeeccccc--CCHH--
Confidence 33344443 44454 78999999999999999998865311 10 001123455554320 1112
Q ss_pred HHHHHHHHHHHHhc--cCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCC-CCcEEEEEe
Q 003769 262 EQKLVELSCHVKSY--MGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGE-SERVWIMGI 338 (796)
Q Consensus 262 E~rl~~l~~~v~~~--~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~-~G~l~~IGa 338 (796)
-+++|++.+... .++.-|+||||+|.|... +.|.-||.|- + .+.+.+|.+
T Consensus 103 --diR~li~~~~~~p~~g~~KV~IIDEah~Ls~~---------------------a~NALLKtLE----EPp~~v~FIL~ 155 (647)
T PRK07994 103 --DTRELLDNVQYAPARGRFKVYLIDEVHMLSRH---------------------SFNALLKTLE----EPPEHVKFLLA 155 (647)
T ss_pred --HHHHHHHHHHhhhhcCCCEEEEEechHhCCHH---------------------HHHHHHHHHH----cCCCCeEEEEe
Confidence 245566555432 145679999999998653 3444244443 2 477888888
Q ss_pred cCh
Q 003769 339 ASF 341 (796)
Q Consensus 339 tT~ 341 (796)
||.
T Consensus 156 Tt~ 158 (647)
T PRK07994 156 TTD 158 (647)
T ss_pred cCC
Confidence 875
No 253
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=97.68 E-value=0.00016 Score=82.85 Aligned_cols=138 Identities=17% Similarity=0.231 Sum_probs=90.4
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCC-
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD- 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~- 659 (796)
++|+...+..+...+.+. .....++++.|++| +||+.+|+.+-..-.... ..|+.+|++... +..-.+.+-|.
T Consensus 141 lig~s~~~~~l~~~i~~~--a~~~~~vli~Ge~G--tGK~~lA~~ih~~s~~~~-~~~v~v~c~~~~-~~~~~~~lfg~~ 214 (445)
T TIGR02915 141 LITSSPGMQKICRTIEKI--APSDITVLLLGESG--TGKEVLARALHQLSDRKD-KRFVAINCAAIP-ENLLESELFGYE 214 (445)
T ss_pred eeecCHHHHHHHHHHHHH--hCCCCCEEEECCCC--cCHHHHHHHHHHhCCcCC-CCeEEEECCCCC-hHHHHHHhcCCC
Confidence 677777777777666532 23345677899999 999999999998876666 789999998652 22111111111
Q ss_pred C-CCCCC--CchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCc-eecCCcEEEEeeCCC
Q 003769 660 V-ELGCC--SYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGE-IVPLKDSIIIFSCDS 732 (796)
Q Consensus 660 ~-~~~~~--~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~-~v~~~n~IiilTsn~ 732 (796)
. .|.|. ...|. +..--..+++|||||.. ++ .+|.-|++++++|.++--.|. .+. -|+-||.||+.
T Consensus 215 ~~~~~~~~~~~~g~----~~~a~~gtl~l~~i~~l--~~-~~q~~l~~~l~~~~~~~~~~~~~~~-~~~rii~~~~~ 283 (445)
T TIGR02915 215 KGAFTGAVKQTLGK----IEYAHGGTLFLDEIGDL--PL-NLQAKLLRFLQERVIERLGGREEIP-VDVRIVCATNQ 283 (445)
T ss_pred CCCcCCCccCCCCc----eeECCCCEEEEechhhC--CH-HHHHHHHHHHhhCeEEeCCCCceee-eceEEEEecCC
Confidence 0 11111 00111 22223578999999999 99 999999999999988653332 222 36678888763
No 254
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=8.3e-05 Score=83.75 Aligned_cols=69 Identities=14% Similarity=0.173 Sum_probs=54.5
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
=||.=+|.||||||||+++.++|..+ +..|+-|++.+... ..| |+.|+-.. ...-||+|.
T Consensus 234 wKRGYLLYGPPGTGKSS~IaAmAn~L----------~ydIydLeLt~v~~----n~d--Lr~LL~~t----~~kSIivIE 293 (457)
T KOG0743|consen 234 WKRGYLLYGPPGTGKSSFIAAMANYL----------NYDIYDLELTEVKL----DSD--LRHLLLAT----PNKSILLIE 293 (457)
T ss_pred hhccceeeCCCCCCHHHHHHHHHhhc----------CCceEEeeeccccC----cHH--HHHHHHhC----CCCcEEEEe
Confidence 46899999999999999999999865 57899999876543 233 66666554 346899999
Q ss_pred chhhhhhhh
Q 003769 286 DLKWVAEFW 294 (796)
Q Consensus 286 Elh~l~~~~ 294 (796)
||+.-+..+
T Consensus 294 DIDcs~~l~ 302 (457)
T KOG0743|consen 294 DIDCSFDLR 302 (457)
T ss_pred ecccccccc
Confidence 999988754
No 255
>PRK08116 hypothetical protein; Validated
Probab=97.68 E-value=8.2e-05 Score=80.10 Aligned_cols=70 Identities=14% Similarity=0.070 Sum_probs=49.9
Q ss_pred ceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHH----HHHHHHHHHHHHhccCCCEEEEE
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEV----EQKLVELSCHVKSYMGRGIVLYL 284 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~----E~rl~~l~~~v~~~~~~~~ILfI 284 (796)
.++|+|+||+|||+++.+++..+.+. +..++.++...+...++..+ .....++++.+.. .-+|+|
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~-------~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~----~dlLvi 184 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEK-------GVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVN----ADLLIL 184 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcC----CCEEEE
Confidence 38899999999999999999998753 46788888777665333222 2233455565554 248999
Q ss_pred cchhh
Q 003769 285 GDLKW 289 (796)
Q Consensus 285 DElh~ 289 (796)
|||+.
T Consensus 185 DDlg~ 189 (268)
T PRK08116 185 DDLGA 189 (268)
T ss_pred ecccC
Confidence 99964
No 256
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=97.67 E-value=4.2e-05 Score=61.22 Aligned_cols=49 Identities=31% Similarity=0.554 Sum_probs=41.1
Q ss_pred HHHHHHhccchhhhhhhcccccccccCHHHHHHHHhcCC--hHHHHHHHcCCChHHHHHHHHhh
Q 003769 114 AQAHQRRGSIENQQQQQQQPVLALKIEVEQLVISILDDP--SVSRVMREAGFSSSQVKIKVEEN 175 (796)
Q Consensus 114 A~~~a~~~~lg~~~~~~~~~~l~~kI~~eHLLLALL~d~--~~a~vL~~~Gis~~~l~~~v~~~ 175 (796)
|+..|++ ++++| |+++|||+||++++ .+.++|+++|++++.+++.+.+.
T Consensus 1 A~~~A~~--~~~~~-----------i~~eHlL~all~~~~~~~~~il~~~~id~~~l~~~i~~~ 51 (53)
T PF02861_consen 1 AQELARE--RGHQY-----------ISPEHLLLALLEDPDSIAARILKKLGIDPEQLKAAIEKA 51 (53)
T ss_dssp HHHHHHH--TTBSS-----------E-HHHHHHHHHHHTTSHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHH--cCCCc-----------ccHHHHHHHHHhhhhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4566766 78888 99999999999964 68999999999999999998754
No 257
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.66 E-value=1.6e-05 Score=80.35 Aligned_cols=73 Identities=16% Similarity=0.131 Sum_probs=48.7
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchH-HHHHHHHHHHHHHHhccCCCEEEEE
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKG-EVEQKLVELSCHVKSYMGRGIVLYL 284 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rg-e~E~rl~~l~~~v~~~~~~~~ILfI 284 (796)
.+.|++|+|+||+|||+++-+++.++.+. |..++.++...|+...+. ....+..++++.+.. .-+|+|
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~-------g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~----~dlLil 114 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRK-------GYSVLFITASDLLDELKQSRSDGSYEELLKRLKR----VDLLIL 114 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHT-------T--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT----SSCEEE
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccC-------CcceeEeecCceeccccccccccchhhhcCcccc----ccEecc
Confidence 67899999999999999999999988753 577888888777661110 011223344555554 358999
Q ss_pred cchhh
Q 003769 285 GDLKW 289 (796)
Q Consensus 285 DElh~ 289 (796)
||+..
T Consensus 115 DDlG~ 119 (178)
T PF01695_consen 115 DDLGY 119 (178)
T ss_dssp ETCTS
T ss_pred cccce
Confidence 99953
No 258
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.65 E-value=0.00021 Score=79.11 Aligned_cols=87 Identities=15% Similarity=0.200 Sum_probs=53.4
Q ss_pred HHHHHHHHHhh---ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHH----
Q 003769 195 DVMSVLNALIN---KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVE---- 267 (796)
Q Consensus 195 ei~~vi~~L~r---~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~---- 267 (796)
-++++.+.+.+ ...+++|.||+||||+.+|+.+-..-.+ ++..|+.+|.+.+-. ..++..+-.
T Consensus 7 ~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r-------~~~pfv~vnc~~~~~---~~l~~~lfG~~~g 76 (329)
T TIGR02974 7 AFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKR-------WQGPLVKLNCAALSE---NLLDSELFGHEAG 76 (329)
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCc-------cCCCeEEEeCCCCCh---HHHHHHHhccccc
Confidence 34444455444 6677888999999999999988653222 356899999876532 122221100
Q ss_pred H--------HHHHHhccCCCEEEEEcchhhhhhh
Q 003769 268 L--------SCHVKSYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 268 l--------~~~v~~~~~~~~ILfIDElh~l~~~ 293 (796)
. ...+.. ..+-.|||||++.|-..
T Consensus 77 ~~~ga~~~~~G~~~~--a~gGtL~Ldei~~L~~~ 108 (329)
T TIGR02974 77 AFTGAQKRHQGRFER--ADGGTLFLDELATASLL 108 (329)
T ss_pred cccCcccccCCchhh--CCCCEEEeCChHhCCHH
Confidence 0 001222 23567999999988654
No 259
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.64 E-value=6.2e-05 Score=87.18 Aligned_cols=130 Identities=16% Similarity=0.178 Sum_probs=89.9
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCC-CceEEecCCCC---cccccccccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHS-NNFTNLSSSQS---RQDDCRTKKR 656 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~-~~~i~~dms~~---~~~~~~~~k~ 656 (796)
|+||+.++..+..++..-|-. --+||.||.| ||||.+||-+|+.+=.... ..=.+..+... ..+.+ .-.
T Consensus 18 vvGQe~v~~~L~nal~~~ri~---hAYlfsG~RG--vGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~--~Dv 90 (515)
T COG2812 18 VVGQEHVVKTLSNALENGRIA---HAYLFSGPRG--VGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSL--IDV 90 (515)
T ss_pred hcccHHHHHHHHHHHHhCcch---hhhhhcCCCC--cCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCc--ccc
Confidence 799999999999998876653 3567999999 9999999999999854320 00111111100 00000 000
Q ss_pred CC--CCCCCCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeC
Q 003769 657 SR--DVELGCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSC 730 (796)
Q Consensus 657 ~~--~~~~~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTs 730 (796)
+- ...-.|-+++..|-|.+.-.| |.|.++||+... .. ..||.||.-+|+ ...+.+|||.+
T Consensus 91 iEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML--S~-~afNALLKTLEE-----------PP~hV~FIlAT 156 (515)
T COG2812 91 IEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML--SK-QAFNALLKTLEE-----------PPSHVKFILAT 156 (515)
T ss_pred hhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh--hH-HHHHHHhccccc-----------CccCeEEEEec
Confidence 00 001123456678999999888 569999999999 99 999999998864 68999999966
Q ss_pred C
Q 003769 731 D 731 (796)
Q Consensus 731 n 731 (796)
.
T Consensus 157 T 157 (515)
T COG2812 157 T 157 (515)
T ss_pred C
Confidence 4
No 260
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.0001 Score=86.38 Aligned_cols=87 Identities=11% Similarity=0.198 Sum_probs=68.1
Q ss_pred ChHHHHHHHHHHh----h---ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc---------
Q 003769 192 DSDDVMSVLNALI----N---KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN--------- 255 (796)
Q Consensus 192 r~~ei~~vi~~L~----r---~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a--------- 255 (796)
-++-=.|+++.++ | +..=++++||||||||+|++.+|..+ |++|+.++++-+..
T Consensus 416 m~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL----------nRkFfRfSvGG~tDvAeIkGHRR 485 (906)
T KOG2004|consen 416 MEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL----------NRKFFRFSVGGMTDVAEIKGHRR 485 (906)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh----------CCceEEEeccccccHHhhcccce
Confidence 3445568888876 2 44556789999999999999999976 67899999887743
Q ss_pred cchHHHHHHHHHHHHHHHhccCCCEEEEEcchhhhh
Q 003769 256 QSKGEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVA 291 (796)
Q Consensus 256 ~~rge~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~ 291 (796)
-|.|-+--|+-+-++.++- .+-++.|||++.+-
T Consensus 486 TYVGAMPGkiIq~LK~v~t---~NPliLiDEvDKlG 518 (906)
T KOG2004|consen 486 TYVGAMPGKIIQCLKKVKT---ENPLILIDEVDKLG 518 (906)
T ss_pred eeeccCChHHHHHHHhhCC---CCceEEeehhhhhC
Confidence 3778888888888888875 35677799999985
No 261
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.64 E-value=0.00011 Score=82.64 Aligned_cols=93 Identities=16% Similarity=0.207 Sum_probs=56.6
Q ss_pred HHHHHHHhh--ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCce-EEEeec--------------ccccc----
Q 003769 197 MSVLNALIN--KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQ-FISLPL--------------FSFRN---- 255 (796)
Q Consensus 197 ~~vi~~L~r--~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~-v~~l~~--------------~~l~a---- 255 (796)
.|+|+++.. +...++|+||||+|||++++.+++.+.... + +.. ++.+-- +.+++
T Consensus 156 ~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nh-f----dv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d 230 (415)
T TIGR00767 156 TRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNH-P----EVELIVLLIDERPEEVTDMQRSVKGEVVASTFD 230 (415)
T ss_pred eeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcccC-C----ceEEEEEEcCCCCccHHHHHHHhhceEEEecCC
Confidence 356677777 777888999999999999999999876541 1 112 222210 11111
Q ss_pred ---cchHHHHHHHHHHHHHHHhccCCCEEEEEcchhhhhhhhc
Q 003769 256 ---QSKGEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWA 295 (796)
Q Consensus 256 ---~~rge~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~~~ 295 (796)
..+-.+-+.+.+..+..... +..+||||||+|.++.+..
T Consensus 231 ~p~~~~~~va~~v~e~Ae~~~~~-GkdVVLlIDEitR~arAqr 272 (415)
T TIGR00767 231 EPASRHVQVAEMVIEKAKRLVEH-KKDVVILLDSITRLARAYN 272 (415)
T ss_pred CChHHHHHHHHHHHHHHHHHHHc-CCCeEEEEEChhHHHHHHH
Confidence 11112222222333333333 7799999999999998763
No 262
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=0.0006 Score=79.16 Aligned_cols=93 Identities=14% Similarity=0.104 Sum_probs=58.5
Q ss_pred HHHHHHHH-HHhh-c-cCceEEEcCCcccHHHHHHHHHHHHHcCCCCC--------------CCCCceEEEeeccccccc
Q 003769 194 DDVMSVLN-ALIN-K-KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPG--------------DLRYAQFISLPLFSFRNQ 256 (796)
Q Consensus 194 ~ei~~vi~-~L~r-~-k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~--------------~L~~~~v~~l~~~~l~a~ 256 (796)
+.+.+.+. .+.. + ....+|.||+|+|||++++.+|+.+....-|. ......|+.+|.++-.
T Consensus 19 e~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~-- 96 (491)
T PRK14964 19 DVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNT-- 96 (491)
T ss_pred HHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCC--
Confidence 44444443 3343 3 34688999999999999999999875322121 1235567888865322
Q ss_pred chHHHHHHHHHHHHHHHhcc--CCCEEEEEcchhhhhh
Q 003769 257 SKGEVEQKLVELSCHVKSYM--GRGIVLYLGDLKWVAE 292 (796)
Q Consensus 257 ~rge~E~rl~~l~~~v~~~~--~~~~ILfIDElh~l~~ 292 (796)
..+ .++++++.+.... +..-|++|||+|.|..
T Consensus 97 ~vd----dIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~ 130 (491)
T PRK14964 97 SVD----DIKVILENSCYLPISSKFKVYIIDEVHMLSN 130 (491)
T ss_pred CHH----HHHHHHHHHHhccccCCceEEEEeChHhCCH
Confidence 122 2566666665321 3456999999998854
No 263
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.00069 Score=76.05 Aligned_cols=135 Identities=9% Similarity=0.044 Sum_probs=73.9
Q ss_pred HHHHHHHhh-ccCce-EEEcCCcccHHHHHHHHHHHHHcCC--CCCC----------C--CCceEEEeecccccccchHH
Q 003769 197 MSVLNALIN-KKRNT-VIVGGNLAAIEGVIRGIIDQFERGQ--VPGD----------L--RYAQFISLPLFSFRNQSKGE 260 (796)
Q Consensus 197 ~~vi~~L~r-~k~n~-vLvGepGvGKTaiv~~la~ri~~~~--vp~~----------L--~~~~v~~l~~~~l~a~~rge 260 (796)
+.+...+.. +-.+. +|+||||+|||++++.+|+.+.... .+.. . ....++.++.++- ....
T Consensus 26 ~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~--~~v~- 102 (363)
T PRK14961 26 TAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASR--TKVE- 102 (363)
T ss_pred HHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEeccccc--CCHH-
Confidence 333444444 44454 7899999999999999999875211 0100 0 0123455543210 1111
Q ss_pred HHHHHHHHHHHHHhcc--CCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEe
Q 003769 261 VEQKLVELSCHVKSYM--GRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGI 338 (796)
Q Consensus 261 ~E~rl~~l~~~v~~~~--~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGa 338 (796)
-++++++.+.... +..-|+||||+|.+... +.|.-||.|-. ..+.+.+|.+
T Consensus 103 ---~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~---------------------a~naLLk~lEe---~~~~~~fIl~ 155 (363)
T PRK14961 103 ---EMREILDNIYYSPSKSRFKVYLIDEVHMLSRH---------------------SFNALLKTLEE---PPQHIKFILA 155 (363)
T ss_pred ---HHHHHHHHHhcCcccCCceEEEEEChhhcCHH---------------------HHHHHHHHHhc---CCCCeEEEEE
Confidence 2556665554321 33569999999988543 22321333321 1467888888
Q ss_pred cChHHHHHhhhcCccccccccceecccCCC
Q 003769 339 ASFQTYTRCKAGHPSLENMWKLHPFTIPVG 368 (796)
Q Consensus 339 tT~~ey~k~~~~dpaLerrf~lq~V~vp~~ 368 (796)
||.. .+ -.+++..|+ +.+.++..
T Consensus 156 t~~~--~~---l~~tI~SRc--~~~~~~~l 178 (363)
T PRK14961 156 TTDV--EK---IPKTILSRC--LQFKLKII 178 (363)
T ss_pred cCCh--Hh---hhHHHHhhc--eEEeCCCC
Confidence 7642 22 346777775 55555543
No 264
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.63 E-value=0.00026 Score=73.70 Aligned_cols=90 Identities=9% Similarity=0.151 Sum_probs=65.2
Q ss_pred CCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCEE
Q 003769 603 EQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHRV 682 (796)
Q Consensus 603 ~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~V 682 (796)
+..+++|.||+| +|||.||++++..++... ..++.+++++.. +.. . . ...+.+
T Consensus 41 ~~~~~~l~G~~G--~GKT~La~ai~~~~~~~~-~~~~~i~~~~~~-~~~--------------~--------~-~~~~~~ 93 (227)
T PRK08903 41 ADRFFYLWGEAG--SGRSHLLQALVADASYGG-RNARYLDAASPL-LAF--------------D--------F-DPEAEL 93 (227)
T ss_pred CCCeEEEECCCC--CCHHHHHHHHHHHHHhCC-CcEEEEehHHhH-HHH--------------h--------h-cccCCE
Confidence 446899999999 999999999999987766 678888876431 100 0 0 123578
Q ss_pred EEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCC
Q 003769 683 FFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 683 vl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn 731 (796)
|++|||+.. ++ ..+..|++.++.-+- . +..+||+|++
T Consensus 94 liiDdi~~l--~~-~~~~~L~~~~~~~~~---~------~~~~vl~~~~ 130 (227)
T PRK08903 94 YAVDDVERL--DD-AQQIALFNLFNRVRA---H------GQGALLVAGP 130 (227)
T ss_pred EEEeChhhc--Cc-hHHHHHHHHHHHHHH---c------CCcEEEEeCC
Confidence 999999998 88 888899998865321 1 2345777776
No 265
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.61 E-value=0.00012 Score=76.45 Aligned_cols=93 Identities=12% Similarity=0.190 Sum_probs=62.6
Q ss_pred ChHHHHHHHHHHhh-cc--Cce-EEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHH-HHHH
Q 003769 192 DSDDVMSVLNALIN-KK--RNT-VIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVE-QKLV 266 (796)
Q Consensus 192 r~~ei~~vi~~L~r-~k--~n~-vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E-~rl~ 266 (796)
.++.....++.++. .. .|| +|.|++|+|||++..+++.++.+.. .+.+++.++...|...+..-+. ..+.
T Consensus 15 ~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~-----~~~~v~y~~~~~f~~~~~~~~~~~~~~ 89 (219)
T PF00308_consen 15 SNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQH-----PGKRVVYLSAEEFIREFADALRDGEIE 89 (219)
T ss_dssp TTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHC-----TTS-EEEEEHHHHHHHHHHHHHTTSHH
T ss_pred cHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhcc-----ccccceeecHHHHHHHHHHHHHcccch
Confidence 45667777777776 22 244 6789999999999999999886421 2578999987666542222111 2334
Q ss_pred HHHHHHHhccCCCEEEEEcchhhhhhh
Q 003769 267 ELSCHVKSYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 267 ~l~~~v~~~~~~~~ILfIDElh~l~~~ 293 (796)
++++.++. --+|+|||+|.+.+.
T Consensus 90 ~~~~~~~~----~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 90 EFKDRLRS----ADLLIIDDIQFLAGK 112 (219)
T ss_dssp HHHHHHCT----SSEEEEETGGGGTTH
T ss_pred hhhhhhhc----CCEEEEecchhhcCc
Confidence 45555554 369999999998765
No 266
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.61 E-value=0.00025 Score=75.38 Aligned_cols=95 Identities=14% Similarity=0.205 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHh---h-ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEE--eeccccc-------c----
Q 003769 193 SDDVMSVLNALI---N-KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFIS--LPLFSFR-------N---- 255 (796)
Q Consensus 193 ~~ei~~vi~~L~---r-~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~--l~~~~l~-------a---- 255 (796)
....++++..|. + ....++|+||+|+|||++++.++..+..+.+. -..++. ++...+. .
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~----~~~~~~~~~~~~~~l~~i~~~lG~~~~ 100 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQERVV----AAKLVNTRVDAEDLLRMVAADFGLETE 100 (269)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeE----EeeeeCCCCCHHHHHHHHHHHcCCCCC
Confidence 344444444443 3 34468899999999999999999876533211 001111 1111110 0
Q ss_pred -cchHHHHHHHHHHHHHHHhccCCCEEEEEcchhhhhh
Q 003769 256 -QSKGEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAE 292 (796)
Q Consensus 256 -~~rge~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~ 292 (796)
..+.+.-.++.+.+...... ++.+||+|||+|++-.
T Consensus 101 ~~~~~~~~~~l~~~l~~~~~~-~~~~vliiDe~~~l~~ 137 (269)
T TIGR03015 101 GRDKAALLRELEDFLIEQFAA-GKRALLVVDEAQNLTP 137 (269)
T ss_pred CCCHHHHHHHHHHHHHHHHhC-CCCeEEEEECcccCCH
Confidence 11222233444433333222 6679999999998754
No 267
>smart00350 MCM minichromosome maintenance proteins.
Probab=97.60 E-value=0.00027 Score=82.80 Aligned_cols=150 Identities=17% Similarity=0.208 Sum_probs=94.5
Q ss_pred HHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHhhc--------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCc
Q 003769 566 ENLKVLSDALERKAVVPWQKEIMPEIARTILECRS--------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNN 637 (796)
Q Consensus 566 e~L~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~rs--------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~ 637 (796)
.-+..|.+.+... |.||+.+-.+|+-++.-.-. -+...++|+.|++| +|||.+||.+++..-.. .
T Consensus 192 ~~~~~l~~si~p~--i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pG--tGKs~lar~l~~~~~r~---~ 264 (509)
T smart00350 192 DIYERLSRSLAPS--IYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPG--TAKSQLLKYVEKTAPRA---V 264 (509)
T ss_pred HHHHHHHHhhCcc--ccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCC--hhHHHHHHHHHHHcCcc---e
Confidence 3456788899999 99999886666665544321 12335899999999 99999999999986322 2
Q ss_pred eEEecCCCCcccc-ccccccCCCCCCCCCCchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecC-C
Q 003769 638 FTNLSSSQSRQDD-CRTKKRSRDVELGCCSYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALA-D 715 (796)
Q Consensus 638 ~i~~dms~~~~~~-~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~-~ 715 (796)
++...++.. .+- ....+ .+ ..| .+. .-..++-.--..|+++|||++. .+ ..+..|+++|++|+++=. .
T Consensus 265 ~~~~~~~~~-~~l~~~~~~---~~-~~g-~~~-~~~G~l~~A~~Gil~iDEi~~l--~~-~~q~~L~e~me~~~i~i~k~ 334 (509)
T smart00350 265 YTTGKGSSA-VGLTAAVTR---DP-ETR-EFT-LEGGALVLADNGVCCIDEFDKM--DD-SDRTAIHEAMEQQTISIAKA 334 (509)
T ss_pred EcCCCCCCc-CCccccceE---cc-Ccc-eEE-ecCccEEecCCCEEEEechhhC--CH-HHHHHHHHHHhcCEEEEEeC
Confidence 433211110 000 00000 01 001 110 0001122233459999999999 99 999999999999998743 4
Q ss_pred CceecCC-cEEEEeeCCC
Q 003769 716 GEIVPLK-DSIIIFSCDS 732 (796)
Q Consensus 716 G~~v~~~-n~IiilTsn~ 732 (796)
|-...+. ++-||.|+|-
T Consensus 335 G~~~~l~~~~~viAa~NP 352 (509)
T smart00350 335 GITTTLNARCSVLAAANP 352 (509)
T ss_pred CEEEEecCCcEEEEEeCC
Confidence 6555553 6778888884
No 268
>PRK06620 hypothetical protein; Validated
Probab=97.59 E-value=0.00019 Score=74.67 Aligned_cols=108 Identities=11% Similarity=0.012 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHhh-c-----cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHH
Q 003769 193 SDDVMSVLNALIN-K-----KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLV 266 (796)
Q Consensus 193 ~~ei~~vi~~L~r-~-----k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~ 266 (796)
++.....++.+.+ - ++.++|+||||+|||+++++++... +..+++ ... .. .
T Consensus 24 N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~----------~~~~~~--~~~---~~--------~ 80 (214)
T PRK06620 24 NDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS----------NAYIIK--DIF---FN--------E 80 (214)
T ss_pred HHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc----------CCEEcc--hhh---hc--------h
Confidence 5556666666664 1 2456899999999999999887642 111211 000 00 0
Q ss_pred HHHHHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHH
Q 003769 267 ELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTR 346 (796)
Q Consensus 267 ~l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k 346 (796)
+..+ ...+|+|||+|.+-+. .+-+ + +..+. ++|...+|+++|+..+..
T Consensus 81 ---~~~~----~~d~lliDdi~~~~~~------------------~lf~--l-~N~~~----e~g~~ilits~~~p~~l~ 128 (214)
T PRK06620 81 ---EILE----KYNAFIIEDIENWQEP------------------ALLH--I-FNIIN----EKQKYLLLTSSDKSRNFT 128 (214)
T ss_pred ---hHHh----cCCEEEEeccccchHH------------------HHHH--H-HHHHH----hcCCEEEEEcCCCccccc
Confidence 1112 2368999999943111 1111 1 22233 478899999999888653
Q ss_pred hhhcCcccccccc
Q 003769 347 CKAGHPSLENMWK 359 (796)
Q Consensus 347 ~~~~dpaLerrf~ 359 (796)
. |.|..|+.
T Consensus 129 ---l-~~L~SRl~ 137 (214)
T PRK06620 129 ---L-PDLSSRIK 137 (214)
T ss_pred ---h-HHHHHHHh
Confidence 3 88999864
No 269
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.59 E-value=0.00015 Score=85.56 Aligned_cols=77 Identities=12% Similarity=0.075 Sum_probs=53.0
Q ss_pred CceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHH-HHHHHHHHHHhccCCCEEEEEcc
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQ-KLVELSCHVKSYMGRGIVLYLGD 286 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~-rl~~l~~~v~~~~~~~~ILfIDE 286 (796)
|.++|+|++|+|||+++.+++..+.+. -.+++++.++...|...+...+.. .+.++.+.++. .-+|+|||
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~-----~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~----~DLLlIDD 385 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRL-----YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYRE----MDILLVDD 385 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHh-----CCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhc----CCEEEEeh
Confidence 346678999999999999999988642 135788889887776543333222 23333344443 36899999
Q ss_pred hhhhhhh
Q 003769 287 LKWVAEF 293 (796)
Q Consensus 287 lh~l~~~ 293 (796)
|+.+.+.
T Consensus 386 Iq~l~gk 392 (617)
T PRK14086 386 IQFLEDK 392 (617)
T ss_pred hccccCC
Confidence 9988754
No 270
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.59 E-value=0.0006 Score=83.74 Aligned_cols=116 Identities=11% Similarity=0.006 Sum_probs=67.6
Q ss_pred HHHHHHHHhh-ccCc-eEEEcCCcccHHHHHHHHHHHHHcCCCCCC----------------CCCceEEEeecccccccc
Q 003769 196 VMSVLNALIN-KKRN-TVIVGGNLAAIEGVIRGIIDQFERGQVPGD----------------LRYAQFISLPLFSFRNQS 257 (796)
Q Consensus 196 i~~vi~~L~r-~k~n-~vLvGepGvGKTaiv~~la~ri~~~~vp~~----------------L~~~~v~~l~~~~l~a~~ 257 (796)
+..+...|.. +.++ .||.|++|+|||++++.||+.+...+-+.. -....|+.+|.++.. .
T Consensus 24 ~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~--~ 101 (824)
T PRK07764 24 TEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHG--G 101 (824)
T ss_pred HHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccC--C
Confidence 3334444444 6667 478899999999999999999863221100 023456667654321 1
Q ss_pred hHHHHHHHHHHHHHHHhc--cCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEE
Q 003769 258 KGEVEQKLVELSCHVKSY--MGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWI 335 (796)
Q Consensus 258 rge~E~rl~~l~~~v~~~--~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~ 335 (796)
..+ +++|++.+... .++.-|+||||+|.|... +.|. |..++... ...+.+
T Consensus 102 Vd~----iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~---------------------a~Na-LLK~LEEp--P~~~~f 153 (824)
T PRK07764 102 VDD----ARELRERAFFAPAESRYKIFIIDEAHMVTPQ---------------------GFNA-LLKIVEEP--PEHLKF 153 (824)
T ss_pred HHH----HHHHHHHHHhchhcCCceEEEEechhhcCHH---------------------HHHH-HHHHHhCC--CCCeEE
Confidence 222 33444443321 144569999999999754 3444 44454211 466888
Q ss_pred EEecCh
Q 003769 336 MGIASF 341 (796)
Q Consensus 336 IGatT~ 341 (796)
|.+||.
T Consensus 154 Il~tt~ 159 (824)
T PRK07764 154 IFATTE 159 (824)
T ss_pred EEEeCC
Confidence 877764
No 271
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.56 E-value=0.00073 Score=79.47 Aligned_cols=127 Identities=14% Similarity=0.126 Sum_probs=71.5
Q ss_pred HHHHHHHHhh-ccCc-eEEEcCCcccHHHHHHHHHHHHHcCC-C---CC----------CCCCceEEEeecccccccchH
Q 003769 196 VMSVLNALIN-KKRN-TVIVGGNLAAIEGVIRGIIDQFERGQ-V---PG----------DLRYAQFISLPLFSFRNQSKG 259 (796)
Q Consensus 196 i~~vi~~L~r-~k~n-~vLvGepGvGKTaiv~~la~ri~~~~-v---p~----------~L~~~~v~~l~~~~l~a~~rg 259 (796)
+..+...+.. +..+ .+|+||||+|||++++.+|+.+.... + |- ......++.+|..+-. ...
T Consensus 25 v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~--gvd 102 (546)
T PRK14957 25 LNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRT--GVE 102 (546)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeeccccc--CHH
Confidence 3344444444 4444 57899999999999999999876321 1 10 0112345666543211 122
Q ss_pred HHHHHHHHHHHHHHhcc--CCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEE
Q 003769 260 EVEQKLVELSCHVKSYM--GRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMG 337 (796)
Q Consensus 260 e~E~rl~~l~~~v~~~~--~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IG 337 (796)
.++++++.+.... ++.-|+||||+|.+... +.|. |.+.+.. -.+.+.+|.
T Consensus 103 ----~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~---------------------a~na-LLK~LEe--pp~~v~fIL 154 (546)
T PRK14957 103 ----ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQ---------------------SFNA-LLKTLEE--PPEYVKFIL 154 (546)
T ss_pred ----HHHHHHHHHHhhhhcCCcEEEEEechhhccHH---------------------HHHH-HHHHHhc--CCCCceEEE
Confidence 2455555554311 45679999999988653 2333 4444421 136788888
Q ss_pred ecChHHHHHhhhcCcccccc
Q 003769 338 IASFQTYTRCKAGHPSLENM 357 (796)
Q Consensus 338 atT~~ey~k~~~~dpaLerr 357 (796)
+||. +++.+ +.+..|
T Consensus 155 ~Ttd--~~kil---~tI~SR 169 (546)
T PRK14957 155 ATTD--YHKIP---VTILSR 169 (546)
T ss_pred EECC--hhhhh---hhHHHh
Confidence 8875 44332 446555
No 272
>PRK15115 response regulator GlrR; Provisional
Probab=97.55 E-value=0.00032 Score=80.26 Aligned_cols=140 Identities=11% Similarity=0.088 Sum_probs=86.4
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCC-
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD- 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~- 659 (796)
++|+...+..+...+... .+...++++.|++| +||+.+|+.+...-.... ..|+.+|++... ++.-.+.+.|.
T Consensus 136 lig~s~~~~~~~~~~~~~--a~~~~~vli~Ge~G--tGk~~lA~~ih~~s~r~~-~~f~~i~c~~~~-~~~~~~~lfg~~ 209 (444)
T PRK15115 136 IVTRSPLMLRLLEQARMV--AQSDVSVLINGQSG--TGKEILAQAIHNASPRAS-KPFIAINCGALP-EQLLESELFGHA 209 (444)
T ss_pred ccccCHHHHHHHHHHHhh--ccCCCeEEEEcCCc--chHHHHHHHHHHhcCCCC-CCeEEEeCCCCC-HHHHHHHhcCCC
Confidence 556655544443333222 33455788999999 999999999999887666 789999998552 21111111111
Q ss_pred C-CCCCCCchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCC
Q 003769 660 V-ELGCCSYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 660 ~-~~~~~~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn 731 (796)
. .|.|.. ..-...+...-...++|||||.. .+ .+|..|++++++|.++--.|.+.---|+.||.||+
T Consensus 210 ~~~~~~~~--~~~~g~~~~a~~gtl~l~~i~~l--~~-~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~ 277 (444)
T PRK15115 210 RGAFTGAV--SNREGLFQAAEGGTLFLDEIGDM--PA-PLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATH 277 (444)
T ss_pred cCCCCCCc--cCCCCcEEECCCCEEEEEccccC--CH-HHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCC
Confidence 0 111110 00000111222468999999999 99 99999999999998864333222223677888876
No 273
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.54 E-value=0.00043 Score=76.62 Aligned_cols=142 Identities=14% Similarity=0.155 Sum_probs=81.0
Q ss_pred ChHHHHHHHHHHhh---ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHH-
Q 003769 192 DSDDVMSVLNALIN---KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVE- 267 (796)
Q Consensus 192 r~~ei~~vi~~L~r---~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~- 267 (796)
++..++++++.+.+ ...+++|+||+||||+++|+.+-..-. -.+..|+.+|.+.+-. ..++..+-.
T Consensus 11 ~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~-------r~~~pfv~v~c~~~~~---~~~~~~lfg~ 80 (326)
T PRK11608 11 EANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSS-------RWQGPFISLNCAALNE---NLLDSELFGH 80 (326)
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCC-------ccCCCeEEEeCCCCCH---HHHHHHHccc
Confidence 55666666666666 566777889999999999998864211 1346799999876532 222222100
Q ss_pred -----------HHHHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhh--c---C---
Q 003769 268 -----------LSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFE--I---G--- 328 (796)
Q Consensus 268 -----------l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~--~---~--- 328 (796)
-...+.. ..+-.|||||++.|-..-. .. |-.++.. + |
T Consensus 81 ~~~~~~g~~~~~~g~l~~--a~gGtL~l~~i~~L~~~~Q------------------~~----L~~~l~~~~~~~~g~~~ 136 (326)
T PRK11608 81 EAGAFTGAQKRHPGRFER--ADGGTLFLDELATAPMLVQ------------------EK----LLRVIEYGELERVGGSQ 136 (326)
T ss_pred cccccCCcccccCCchhc--cCCCeEEeCChhhCCHHHH------------------HH----HHHHHhcCcEEeCCCCc
Confidence 0011222 2345799999998865410 01 2223311 0 0
Q ss_pred -CCCcEEEEEecChHHHH--HhhhcCccccccccceecccCC
Q 003769 329 -ESERVWIMGIASFQTYT--RCKAGHPSLENMWKLHPFTIPV 367 (796)
Q Consensus 329 -~~G~l~~IGatT~~ey~--k~~~~dpaLerrf~lq~V~vp~ 367 (796)
..-++++|.+|+.+--. ..-.-.+.|-.+|....|.+|+
T Consensus 137 ~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPp 178 (326)
T PRK11608 137 PLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPP 178 (326)
T ss_pred eeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCC
Confidence 01258999998865322 1112234566676666777776
No 274
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0022 Score=73.47 Aligned_cols=174 Identities=10% Similarity=0.111 Sum_probs=103.3
Q ss_pred cccCHHHHHHHHhcCChHHHHHHHcCCChHHHHHHHHhhccCCCCCCCCCCCCC--CCh----HHHHHHHHHHh---h-c
Q 003769 137 LKIEVEQLVISILDDPSVSRVMREAGFSSSQVKIKVEENVPLGICSQSTNKSLG--RDS----DDVMSVLNALI---N-K 206 (796)
Q Consensus 137 ~kI~~eHLLLALL~d~~~a~vL~~~Gis~~~l~~~v~~~v~~~~~s~~p~g~ld--pr~----~ei~~vi~~L~---r-~ 206 (796)
+||..+++|-||-+-. -.+|++.+.+...+.. |-++ |+- ++=..+++.+- | .
T Consensus 476 lkV~r~DFl~aL~dVk------PAFG~see~l~~~~~~------------Gmi~~g~~v~~il~~G~llv~qvk~s~~s~ 537 (744)
T KOG0741|consen 476 LKVTRGDFLNALEDVK------PAFGISEEDLERFVMN------------GMINWGPPVTRILDDGKLLVQQVKNSERSP 537 (744)
T ss_pred eeecHHHHHHHHHhcC------cccCCCHHHHHHHHhC------------CceeecccHHHHHhhHHHHHHHhhccccCc
Confidence 6788888888876421 2468888888777662 2221 111 22223333332 2 4
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEcc
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLGD 286 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfIDE 286 (796)
-.+++|.||||+||||++-.+|.. .+.| -.++ ++...++....-.-=.-++++++.+.+ ..-.||+||+
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~---S~FP----FvKi--iSpe~miG~sEsaKc~~i~k~F~DAYk--S~lsiivvDd 606 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALS---SDFP----FVKI--ISPEDMIGLSESAKCAHIKKIFEDAYK--SPLSIIVVDD 606 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhh---cCCC----eEEE--eChHHccCccHHHHHHHHHHHHHHhhc--CcceEEEEcc
Confidence 457889999999999999888863 2333 2233 333355554444444567788877765 3557999999
Q ss_pred hhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC----CCCcEEEEEecChHHHHHhhhcCccc
Q 003769 287 LKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG----ESERVWIMGIASFQTYTRCKAGHPSL 354 (796)
Q Consensus 287 lh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~----~~G~l~~IGatT~~ey~k~~~~dpaL 354 (796)
|..|++. ..-+. +..|+-|.+|+--+. ..-+|.++|+|+.-++.+-...-.+|
T Consensus 607 iErLiD~-----vpIGP----------RfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F 663 (744)
T KOG0741|consen 607 IERLLDY-----VPIGP----------RFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCF 663 (744)
T ss_pred hhhhhcc-----cccCc----------hhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhh
Confidence 9999986 22111 233332333331111 13469999999988887654443333
No 275
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00017 Score=75.52 Aligned_cols=107 Identities=16% Similarity=0.210 Sum_probs=77.5
Q ss_pred cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCC--CCchhhHHHHHHhC
Q 003769 601 KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGC--CSYIERLGLALNEN 678 (796)
Q Consensus 601 ~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~--~~~~~~L~eavr~~ 678 (796)
..|.|.+ +.||+| +|||-|||+.|..-- .+|||+..|++- . | |.| .-.+.-+...-++|
T Consensus 187 dpprgvl-lygppg--~gktml~kava~~t~----a~firvvgsefv-q-----k------ylgegprmvrdvfrlaken 247 (408)
T KOG0727|consen 187 DPPRGVL-LYGPPG--TGKTMLAKAVANHTT----AAFIRVVGSEFV-Q-----K------YLGEGPRMVRDVFRLAKEN 247 (408)
T ss_pred CCCcceE-EeCCCC--CcHHHHHHHHhhccc----hheeeeccHHHH-H-----H------HhccCcHHHHHHHHHHhcc
Confidence 5566665 679999 999999999998652 779999999772 1 2 222 22345566778999
Q ss_pred CCEEEEEccccc---------CCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCCC
Q 003769 679 PHRVFFMEDLDD---------HKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDSL 733 (796)
Q Consensus 679 P~~Vvl~deiek---------a~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~~ 733 (796)
--++||+||||- -+-|. +|+.+|+..+.. .|+-... .|.=+||.+|--
T Consensus 248 apsiifideidaiatkrfdaqtgadr-evqril~ellnq---mdgfdq~---~nvkvimatnra 304 (408)
T KOG0727|consen 248 APSIIFIDEIDAIATKRFDAQTGADR-EVQRILIELLNQ---MDGFDQT---TNVKVIMATNRA 304 (408)
T ss_pred CCcEEEeehhhhHhhhhccccccccH-HHHHHHHHHHHh---ccCcCcc---cceEEEEecCcc
Confidence 999999999983 12389 999999998853 2222223 466699999853
No 276
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.53 E-value=0.00019 Score=88.69 Aligned_cols=59 Identities=20% Similarity=0.385 Sum_probs=52.6
Q ss_pred ccHHHHHHHHHHHHHHHhccchhhhhhhcccccccccCHHHHHHHHhcCC--hHHHHHHHcCCChHHHHHHHHh
Q 003769 103 LSNALVAAFKRAQAHQRRGSIENQQQQQQQPVLALKIEVEQLVISILDDP--SVSRVMREAGFSSSQVKIKVEE 174 (796)
Q Consensus 103 ~S~~l~~aL~~A~~~a~~~~lg~~~~~~~~~~l~~kI~~eHLLLALL~d~--~~a~vL~~~Gis~~~l~~~v~~ 174 (796)
+++.+.++|..|..+|++ ++|+| |+++|||+||++++ .+..+|..+|++...+++.+..
T Consensus 1 Lt~~a~~~L~~A~~~A~~--~~h~~-----------I~~eHLLlaLL~~~~~~~~~iL~~~Gvd~~~Lr~~le~ 61 (852)
T TIGR03345 1 LNPTSRRALEQAAALCVA--RGHPE-----------VELEHWLLALLDQPDSDLAAILRHFGVDLGRLKADLAR 61 (852)
T ss_pred CCHHHHHHHHHHHHHHHH--hCCCc-----------ccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 578899999999999998 89999 99999999999863 4688999999999999888763
No 277
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.52 E-value=0.00097 Score=79.07 Aligned_cols=119 Identities=13% Similarity=0.068 Sum_probs=70.0
Q ss_pred HHHHH-HHHHHhh-ccCce-EEEcCCcccHHHHHHHHHHHHHcCCCCC----------------CCCCceEEEeeccccc
Q 003769 194 DDVMS-VLNALIN-KKRNT-VIVGGNLAAIEGVIRGIIDQFERGQVPG----------------DLRYAQFISLPLFSFR 254 (796)
Q Consensus 194 ~ei~~-vi~~L~r-~k~n~-vLvGepGvGKTaiv~~la~ri~~~~vp~----------------~L~~~~v~~l~~~~l~ 254 (796)
+.|.+ +...+.+ +..+. +|.||+|+|||++++.+|..+....-|. .-....|+.+|.++-.
T Consensus 19 ~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~ 98 (584)
T PRK14952 19 EHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHG 98 (584)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEecccccc
Confidence 34444 3333444 66675 7889999999999999999886321110 0112467777754322
Q ss_pred ccchHHHHHHHHHHHHHHHhcc--CCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCc
Q 003769 255 NQSKGEVEQKLVELSCHVKSYM--GRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESER 332 (796)
Q Consensus 255 a~~rge~E~rl~~l~~~v~~~~--~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~ 332 (796)
...+ +++|++.+.... +..-|++|||+|.+-.. +.|. |...+.. -.+.
T Consensus 99 --gvd~----iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~---------------------A~NA-LLK~LEE--pp~~ 148 (584)
T PRK14952 99 --GVDD----TRELRDRAFYAPAQSRYRIFIVDEAHMVTTA---------------------GFNA-LLKIVEE--PPEH 148 (584)
T ss_pred --CHHH----HHHHHHHHHhhhhcCCceEEEEECCCcCCHH---------------------HHHH-HHHHHhc--CCCC
Confidence 1222 345555554311 34569999999988643 3344 3333321 1577
Q ss_pred EEEEEecChH
Q 003769 333 VWIMGIASFQ 342 (796)
Q Consensus 333 l~~IGatT~~ 342 (796)
+.+|.+||..
T Consensus 149 ~~fIL~tte~ 158 (584)
T PRK14952 149 LIFIFATTEP 158 (584)
T ss_pred eEEEEEeCCh
Confidence 8888888654
No 278
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.52 E-value=7.9e-05 Score=81.50 Aligned_cols=112 Identities=19% Similarity=0.283 Sum_probs=74.8
Q ss_pred CCCcchHHHHHHHHHHHhhc-cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCC
Q 003769 581 VPWQKEIMPEIARTILECRS-KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs-~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~ 659 (796)
++||++++.. +.+++.-- ...+-+++|+||.| +|||.||+.||..-=... -.||.+.-......+.
T Consensus 140 yvGQ~hlv~q--~gllrs~ieq~~ipSmIlWGppG--~GKTtlArlia~tsk~~S-yrfvelSAt~a~t~dv-------- 206 (554)
T KOG2028|consen 140 YVGQSHLVGQ--DGLLRSLIEQNRIPSMILWGPPG--TGKTTLARLIASTSKKHS-YRFVELSATNAKTNDV-------- 206 (554)
T ss_pred hcchhhhcCc--chHHHHHHHcCCCCceEEecCCC--CchHHHHHHHHhhcCCCc-eEEEEEeccccchHHH--------
Confidence 6899999877 56655544 45667999999999 999999999998653222 3355543321100000
Q ss_pred CCCCCCCchh-hHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEec
Q 003769 660 VELGCCSYIE-RLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIAL 713 (796)
Q Consensus 660 ~~~~~~~~~~-~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d 713 (796)
+ +.++ .=-+...-+-..|+|||||..- .. .-|+.||-.+|+|.++-
T Consensus 207 R-----~ife~aq~~~~l~krkTilFiDEiHRF--Nk-sQQD~fLP~VE~G~I~l 253 (554)
T KOG2028|consen 207 R-----DIFEQAQNEKSLTKRKTILFIDEIHRF--NK-SQQDTFLPHVENGDITL 253 (554)
T ss_pred H-----HHHHHHHHHHhhhcceeEEEeHHhhhh--hh-hhhhcccceeccCceEE
Confidence 0 1111 0111122345689999999998 88 88999999999999984
No 279
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.51 E-value=0.00028 Score=78.48 Aligned_cols=131 Identities=15% Similarity=0.138 Sum_probs=82.0
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCc-e-EEecCC---CCccccccccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNN-F-TNLSSS---QSRQDDCRTKK 655 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~-~-i~~dms---~~~~~~~~~~k 655 (796)
.|||.++=..+... + +|-.-.+||.||+| +||+.+|+.+|+.+....... - -+-.+. ....+.|.-..
T Consensus 3 yPW~~~~~~~l~~~----~-~rl~ha~Lf~Gp~G--~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~ 75 (342)
T PRK06964 3 YPWQTDDWNRLQAL----R-ARLPHALLLHGQAG--IGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYR 75 (342)
T ss_pred CcccHHHHHHHHHh----c-CCcceEEEEECCCC--CCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEE
Confidence 59999988888773 2 34455777999999 999999999999998753010 0 000000 00001111000
Q ss_pred cCCC----------------------------C-CCCCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHH
Q 003769 656 RSRD----------------------------V-ELGCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGL 702 (796)
Q Consensus 656 ~~~~----------------------------~-~~~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l 702 (796)
.+.+ + ...+-+.+..|.+.+...| |+|++||+.|+. +. .-.|.|
T Consensus 76 ~i~p~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m--~~-~AaNaL 152 (342)
T PRK06964 76 IVRPEALAAEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL--NV-AAANAL 152 (342)
T ss_pred EEecccccccccccccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc--CH-HHHHHH
Confidence 0000 0 0011122235566665555 679999999999 99 999999
Q ss_pred HHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 703 KQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 703 ~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
|..+|+ .=.+++|||+|+.
T Consensus 153 LKtLEE-----------Pp~~t~fiL~t~~ 171 (342)
T PRK06964 153 LKTLEE-----------PPPGTVFLLVSAR 171 (342)
T ss_pred HHHhcC-----------CCcCcEEEEEECC
Confidence 999984 2378889997764
No 280
>PRK08116 hypothetical protein; Validated
Probab=97.50 E-value=0.00024 Score=76.53 Aligned_cols=101 Identities=16% Similarity=0.192 Sum_probs=66.5
Q ss_pred eEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCC--CchhhHHHHHHhCCCEE
Q 003769 605 TWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCC--SYIERLGLALNENPHRV 682 (796)
Q Consensus 605 ~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~--~~~~~L~eavr~~P~~V 682 (796)
.+++|.||+| +|||.||.++|..+-... ..++.+++++. .... + . .|.+. .....+.+.+... .|
T Consensus 115 ~gl~l~G~~G--tGKThLa~aia~~l~~~~-~~v~~~~~~~l-l~~i---~--~--~~~~~~~~~~~~~~~~l~~~--dl 181 (268)
T PRK08116 115 VGLLLWGSVG--TGKTYLAACIANELIEKG-VPVIFVNFPQL-LNRI---K--S--TYKSSGKEDENEIIRSLVNA--DL 181 (268)
T ss_pred ceEEEECCCC--CCHHHHHHHHHHHHHHcC-CeEEEEEHHHH-HHHH---H--H--HHhccccccHHHHHHHhcCC--CE
Confidence 4799999999 999999999999986544 55677776543 1111 0 0 01111 1112445555544 59
Q ss_pred EEEccc--ccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCC
Q 003769 683 FFMEDL--DDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 683 vl~dei--eka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn 731 (796)
++|||+ |+. .. ..+..|.++|+... . +|+ -+|+|||
T Consensus 182 LviDDlg~e~~--t~-~~~~~l~~iin~r~-~--~~~-------~~IiTsN 219 (268)
T PRK08116 182 LILDDLGAERD--TE-WAREKVYNIIDSRY-R--KGL-------PTIVTTN 219 (268)
T ss_pred EEEecccCCCC--CH-HHHHHHHHHHHHHH-H--CCC-------CEEEECC
Confidence 999999 777 77 88888999998642 2 232 2888898
No 281
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.50 E-value=0.0002 Score=79.37 Aligned_cols=75 Identities=12% Similarity=0.000 Sum_probs=52.1
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHH-HH--HHHHHHHHHHHhccCCCEEE
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGE-VE--QKLVELSCHVKSYMGRGIVL 282 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge-~E--~rl~~l~~~v~~~~~~~~IL 282 (796)
.+.|++|+|+||||||+++.++|..+.+. |..|+.++...|....+.. ++ ......++.+.. --+|
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~-------g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~----~DLL 250 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDR-------GKSVIYRTADELIEILREIRFNNDKELEEVYDLLIN----CDLL 250 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHC-------CCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhcc----CCEE
Confidence 45899999999999999999999988753 6788888887776522211 11 111222444443 2589
Q ss_pred EEcchhhhh
Q 003769 283 YLGDLKWVA 291 (796)
Q Consensus 283 fIDElh~l~ 291 (796)
+||||+...
T Consensus 251 IIDDlG~e~ 259 (329)
T PRK06835 251 IIDDLGTEK 259 (329)
T ss_pred EEeccCCCC
Confidence 999998764
No 282
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.50 E-value=0.00042 Score=78.46 Aligned_cols=70 Identities=16% Similarity=0.224 Sum_probs=58.1
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc-cchH-HHHHHHHHHHHHHHhccCCCEEEE
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN-QSKG-EVEQKLVELSCHVKSYMGRGIVLY 283 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a-~~rg-e~E~rl~~l~~~v~~~~~~~~ILf 283 (796)
.++|++|+||||||||++++.||..+ +..|+.+|...+.. .|.| +.|+.++.+++.... +
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l----------~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~--------~ 107 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLA----------NAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVK--------L 107 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh----------CCeEEEeecceeecCCcccCCHHHHHHHHHHHHHH--------H
Confidence 46899999999999999999999875 57899999887774 6877 799999999998764 1
Q ss_pred Ecchhhhhhhh
Q 003769 284 LGDLKWVAEFW 294 (796)
Q Consensus 284 IDElh~l~~~~ 294 (796)
+ +++.+.+.+
T Consensus 108 i-~~d~i~~~r 117 (441)
T TIGR00390 108 V-KEEAIEKVR 117 (441)
T ss_pred H-HHHHHhHHH
Confidence 3 468888775
No 283
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.49 E-value=0.00087 Score=80.18 Aligned_cols=92 Identities=13% Similarity=0.168 Sum_probs=53.4
Q ss_pred HHHHHHHHHhh-c-cCceEEEcCCcccHHHHHHHHHHHHHcCCCCC-C-------------CCCceEEEeecccccccch
Q 003769 195 DVMSVLNALIN-K-KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPG-D-------------LRYAQFISLPLFSFRNQSK 258 (796)
Q Consensus 195 ei~~vi~~L~r-~-k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~-~-------------L~~~~v~~l~~~~l~a~~r 258 (796)
-++.+...+.. + ....+|+|++|+|||++++.||+.+.....+. . -+...++.+|.++- ...
T Consensus 24 vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~--~gV 101 (709)
T PRK08691 24 VVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASN--TGI 101 (709)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEecccc--CCH
Confidence 33444444444 3 34578999999999999999999875321110 0 01123455554321 112
Q ss_pred HHHHHHHHHHHHHHHhcc--CCCEEEEEcchhhhhh
Q 003769 259 GEVEQKLVELSCHVKSYM--GRGIVLYLGDLKWVAE 292 (796)
Q Consensus 259 ge~E~rl~~l~~~v~~~~--~~~~ILfIDElh~l~~ 292 (796)
..++++++.+.... ++.-|+||||+|.|-.
T Consensus 102 ----d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~ 133 (709)
T PRK08691 102 ----DNIREVLENAQYAPTAGKYKVYIIDEVHMLSK 133 (709)
T ss_pred ----HHHHHHHHHHHhhhhhCCcEEEEEECccccCH
Confidence 24566666544210 4457999999997754
No 284
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.48 E-value=0.00028 Score=87.44 Aligned_cols=59 Identities=27% Similarity=0.386 Sum_probs=53.4
Q ss_pred cccHHHHHHHHHHHHHHHhccchhhhhhhcccccccccCHHHHHHHHhcCC--hHHHHHHHcCCChHHHHHHHH
Q 003769 102 SLSNALVAAFKRAQAHQRRGSIENQQQQQQQPVLALKIEVEQLVISILDDP--SVSRVMREAGFSSSQVKIKVE 173 (796)
Q Consensus 102 ~~S~~l~~aL~~A~~~a~~~~lg~~~~~~~~~~l~~kI~~eHLLLALL~d~--~~a~vL~~~Gis~~~l~~~v~ 173 (796)
.||+.+..+|+.|...|++ ++|.| |+++|||++|++++ .+..+|..+|++...+++.+.
T Consensus 5 ~~~~~~~~~l~~a~~~a~~--~~~~~-----------~~~~hll~~l~~~~~~~~~~~l~~~~~~~~~l~~~~~ 65 (857)
T PRK10865 5 RLTNKFQLALADAQSLALG--HDNQF-----------IEPLHLMSALLNQEGGSVRPLLTSAGINAGQLRTDIN 65 (857)
T ss_pred HhCHHHHHHHHHHHHHHHH--cCCCc-----------ccHHHHHHHHHhCCccHHHHHHHHcCCCHHHHHHHHH
Confidence 4899999999999999988 88998 99999999999964 478899999999999888776
No 285
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.48 E-value=0.00055 Score=76.22 Aligned_cols=111 Identities=19% Similarity=0.172 Sum_probs=68.5
Q ss_pred CCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCc--h-hhHHHHH---
Q 003769 602 KEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSY--I-ERLGLAL--- 675 (796)
Q Consensus 602 ~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~--~-~~L~eav--- 675 (796)
++.--+++.||.| +|||.+|+++|..+ |- +||.++.++-. ++ |.|.+. + +.+.+|-
T Consensus 146 k~PlgllL~GPPG--cGKTllAraiA~el-g~---~~i~vsa~eL~------sk------~vGEsEk~IR~~F~~A~~~a 207 (413)
T PLN00020 146 KVPLILGIWGGKG--QGKSFQCELVFKKM-GI---EPIVMSAGELE------SE------NAGEPGKLIRQRYREAADII 207 (413)
T ss_pred CCCeEEEeeCCCC--CCHHHHHHHHHHHc-CC---CeEEEEHHHhh------cC------cCCcHHHHHHHHHHHHHHHh
Confidence 5556677899999 99999999999998 54 48998886431 11 333321 1 2333332
Q ss_pred -HhCCCEEEEEcccccCC---------CChHHHHHHHHHHHHc-------ceEecCCCceecCCcEEEEeeCCCCC
Q 003769 676 -NENPHRVFFMEDLDDHK---------VDSCYCQKGLKQAIEN-------GCIALADGEIVPLKDSIIIFSCDSLD 734 (796)
Q Consensus 676 -r~~P~~Vvl~deieka~---------~~~~~v~~~l~q~~d~-------G~l~d~~G~~v~~~n~IiilTsn~~~ 734 (796)
++.--+||||||||..- +...-|...|+..+|. |..++ .-.-++..||.|+|-++
T Consensus 208 ~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~----~~~~~~V~VIaTTNrpd 279 (413)
T PLN00020 208 KKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWRE----KEEIPRVPIIVTGNDFS 279 (413)
T ss_pred hccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccc----cccCCCceEEEeCCCcc
Confidence 13344999999999540 0010123567777774 32111 11235688999999764
No 286
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.47 E-value=5.4e-05 Score=76.13 Aligned_cols=78 Identities=14% Similarity=0.221 Sum_probs=53.3
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHH-cCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhcc--CCCEEEE
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFE-RGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYM--GRGIVLY 283 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~-~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~--~~~~ILf 283 (796)
+.|++|+||+|||||.+++.||+.+. .. ...++.+|++.+.. .++.+.-+..++.....+. ...-|+|
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~-------~~~~~~~d~s~~~~--~~~~~~~~~~l~~~~~~~v~~~~~gVVl 73 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGS-------ERPLIRIDMSEYSE--GDDVESSVSKLLGSPPGYVGAEEGGVVL 73 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SS-------CCEEEEEEGGGHCS--HHHCSCHCHHHHHHTTCHHHHHHHTEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCC-------ccchHHHhhhcccc--cchHHhhhhhhhhcccceeeccchhhhh
Confidence 56889999999999999999999886 33 35799999987765 2233333333332211000 1123999
Q ss_pred Ecchhhhhhh
Q 003769 284 LGDLKWVAEF 293 (796)
Q Consensus 284 IDElh~l~~~ 293 (796)
+||++.+...
T Consensus 74 lDEidKa~~~ 83 (171)
T PF07724_consen 74 LDEIDKAHPS 83 (171)
T ss_dssp EETGGGCSHT
T ss_pred hHHHhhcccc
Confidence 9999998874
No 287
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.47 E-value=0.0011 Score=77.37 Aligned_cols=94 Identities=11% Similarity=0.129 Sum_probs=57.1
Q ss_pred hHHHHHHHHH-Hhh--ccCceEEEcCCcccHHHHHHHHHHHHHcCCC--------C----------CCCCCceEEEeecc
Q 003769 193 SDDVMSVLNA-LIN--KKRNTVIVGGNLAAIEGVIRGIIDQFERGQV--------P----------GDLRYAQFISLPLF 251 (796)
Q Consensus 193 ~~ei~~vi~~-L~r--~k~n~vLvGepGvGKTaiv~~la~ri~~~~v--------p----------~~L~~~~v~~l~~~ 251 (796)
.+.+.+.+.. +.+ -..+.+|.||||||||++++.+|..+....- | .......++.+|.+
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaa 105 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAA 105 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeecc
Confidence 3444444443 333 2357889999999999999999998864210 1 01122356666653
Q ss_pred cccccchHHHHHHHHHHHHHHHhcc--CCCEEEEEcchhhhhh
Q 003769 252 SFRNQSKGEVEQKLVELSCHVKSYM--GRGIVLYLGDLKWVAE 292 (796)
Q Consensus 252 ~l~a~~rge~E~rl~~l~~~v~~~~--~~~~ILfIDElh~l~~ 292 (796)
+- ...+ .++++++.+.... +..-|+||||+|.+..
T Consensus 106 s~--~~vd----~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~ 142 (507)
T PRK06645 106 SK--TSVD----DIRRIIESAEYKPLQGKHKIFIIDEVHMLSK 142 (507)
T ss_pred CC--CCHH----HHHHHHHHHHhccccCCcEEEEEEChhhcCH
Confidence 21 2233 3556666665321 4467999999998854
No 288
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.47 E-value=0.00011 Score=80.55 Aligned_cols=72 Identities=17% Similarity=0.128 Sum_probs=50.6
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHH-HHHHHHHHHHHhccCCCEEEEEc
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVE-QKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E-~rl~~l~~~v~~~~~~~~ILfID 285 (796)
.++++|+|+||||||.++.++|..+.+. |..+..+.+..|+...+.-+. ..+.+.++.++. --+|+||
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~-------g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~----~dlLiID 224 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKK-------GVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKE----APVLMLD 224 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcC----CCEEEEe
Confidence 5689999999999999999999998753 566777776666552222111 124455555554 3699999
Q ss_pred chhh
Q 003769 286 DLKW 289 (796)
Q Consensus 286 Elh~ 289 (796)
||..
T Consensus 225 DiG~ 228 (306)
T PRK08939 225 DIGA 228 (306)
T ss_pred cCCC
Confidence 9964
No 289
>PF13173 AAA_14: AAA domain
Probab=97.47 E-value=0.0003 Score=66.93 Aligned_cols=81 Identities=20% Similarity=0.298 Sum_probs=58.8
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhC---CCEE
Q 003769 606 WLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNEN---PHRV 682 (796)
Q Consensus 606 ~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~---P~~V 682 (796)
+.++.||.| ||||++++.+++.+. .. ++.+.+|+.+.. .... . .+ . +.+.+++. ...+
T Consensus 4 ~~~l~G~R~--vGKTtll~~~~~~~~-~~-~~~~yi~~~~~~-~~~~--~---~~-----~----~~~~~~~~~~~~~~~ 64 (128)
T PF13173_consen 4 IIILTGPRG--VGKTTLLKQLAKDLL-PP-ENILYINFDDPR-DRRL--A---DP-----D----LLEYFLELIKPGKKY 64 (128)
T ss_pred eEEEECCCC--CCHHHHHHHHHHHhc-cc-ccceeeccCCHH-HHHH--h---hh-----h----hHHHHHHhhccCCcE
Confidence 578999999 999999999999887 44 678999997542 1100 0 00 0 33334433 4678
Q ss_pred EEEcccccCCCChHHHHHHHHHHHHcc
Q 003769 683 FFMEDLDDHKVDSCYCQKGLKQAIENG 709 (796)
Q Consensus 683 vl~deieka~~~~~~v~~~l~q~~d~G 709 (796)
|+||||.+. .+.+..++...|++
T Consensus 65 i~iDEiq~~----~~~~~~lk~l~d~~ 87 (128)
T PF13173_consen 65 IFIDEIQYL----PDWEDALKFLVDNG 87 (128)
T ss_pred EEEehhhhh----ccHHHHHHHHHHhc
Confidence 999999998 48889999999855
No 290
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.45 E-value=0.00027 Score=82.24 Aligned_cols=138 Identities=18% Similarity=0.194 Sum_probs=85.3
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCC-Cc-ccc---c-ccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQ-SR-QDD---C-RTK 654 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~-~~-~~~---~-~~~ 654 (796)
++||..++..+.-++ .+...++|.||+| .|||.+|+.|+.++.... . =+.++.+. |+ .+. . ...
T Consensus 193 v~Gq~~~~~al~laa------~~G~~llliG~~G--sGKTtLak~L~gllpp~~-g-~e~le~~~i~s~~g~~~~~~~~~ 262 (506)
T PRK09862 193 VIGQEQGKRGLEITA------AGGHNLLLIGPPG--TGKTMLASRINGLLPDLS-N-EEALESAAILSLVNAESVQKQWR 262 (506)
T ss_pred EECcHHHHhhhheec------cCCcEEEEECCCC--CcHHHHHHHHhccCCCCC-C-cEEEecchhhhhhccccccCCcC
Confidence 689987776643222 2445778999999 999999999999886443 1 23344432 10 000 0 001
Q ss_pred ccC-CCC-------CCCCCCchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEec-CCCceec-CCcE
Q 003769 655 KRS-RDV-------ELGCCSYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIAL-ADGEIVP-LKDS 724 (796)
Q Consensus 655 k~~-~~~-------~~~~~~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d-~~G~~v~-~~n~ 724 (796)
++| ++| +..|+|..-+ -..+..--.-|+|+|||+.. .+ .++..|+|.||+|.++- ..|..+. =.+.
T Consensus 263 ~rPfr~ph~~~s~~~l~GGg~~~~-pG~l~~A~gGvLfLDEi~e~--~~-~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f 338 (506)
T PRK09862 263 QRPFRSPHHSASLTAMVGGGAIPG-PGEISLAHNGVLFLDELPEF--ER-RTLDALREPIESGQIHLSRTRAKITYPARF 338 (506)
T ss_pred CCCccCCCccchHHHHhCCCceeh-hhHhhhccCCEEecCCchhC--CH-HHHHHHHHHHHcCcEEEecCCcceeccCCE
Confidence 111 111 1222222101 12344445579999999999 99 99999999999999973 3343332 3677
Q ss_pred EEEeeCCC
Q 003769 725 IIIFSCDS 732 (796)
Q Consensus 725 IiilTsn~ 732 (796)
.+|.|+|.
T Consensus 339 ~lIAa~NP 346 (506)
T PRK09862 339 QLVAAMNP 346 (506)
T ss_pred EEEEeecC
Confidence 89999985
No 291
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.45 E-value=0.0014 Score=66.42 Aligned_cols=87 Identities=14% Similarity=0.027 Sum_probs=50.8
Q ss_pred HHHHhh-c-cCceEEEcCCcccHHHHHHHHHHHHHcCC----CCC------------CCCCceEEEeecccccccchHHH
Q 003769 200 LNALIN-K-KRNTVIVGGNLAAIEGVIRGIIDQFERGQ----VPG------------DLRYAQFISLPLFSFRNQSKGEV 261 (796)
Q Consensus 200 i~~L~r-~-k~n~vLvGepGvGKTaiv~~la~ri~~~~----vp~------------~L~~~~v~~l~~~~l~a~~rge~ 261 (796)
.+.+.+ + ..+.+|.||+|+|||++++.++..+.... .|- .-.+..++..+... ...
T Consensus 5 ~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~---~~~--- 78 (188)
T TIGR00678 5 KRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQS---IKV--- 78 (188)
T ss_pred HHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCc---CCH---
Confidence 344444 3 35578899999999999999999986420 010 00112222222111 111
Q ss_pred HHHHHHHHHHHHhcc--CCCEEEEEcchhhhhhh
Q 003769 262 EQKLVELSCHVKSYM--GRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 262 E~rl~~l~~~v~~~~--~~~~ILfIDElh~l~~~ 293 (796)
+.++++++.+.... +..-|++|||+|.+...
T Consensus 79 -~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~ 111 (188)
T TIGR00678 79 -DQVRELVEFLSRTPQESGRRVVIIEDAERMNEA 111 (188)
T ss_pred -HHHHHHHHHHccCcccCCeEEEEEechhhhCHH
Confidence 34555666665421 45679999999988654
No 292
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.44 E-value=0.00042 Score=83.35 Aligned_cols=102 Identities=17% Similarity=0.200 Sum_probs=66.1
Q ss_pred EEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCEEEEEc
Q 003769 607 LLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHRVFFME 686 (796)
Q Consensus 607 ~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vvl~d 686 (796)
+||.||+| +|||.+|+++|..+ + -.|+.++.+++. +.. .+ .+...+..+.+..+.++.+|||||
T Consensus 188 ill~G~~G--~GKt~~~~~~a~~~-~---~~f~~is~~~~~-~~~--------~g-~~~~~~~~~f~~a~~~~P~IifID 251 (644)
T PRK10733 188 VLMVGPPG--TGKTLLAKAIAGEA-K---VPFFTISGSDFV-EMF--------VG-VGASRVRDMFEQAKKAAPCIIFID 251 (644)
T ss_pred EEEECCCC--CCHHHHHHHHHHHc-C---CCEEEEehHHhH-Hhh--------hc-ccHHHHHHHHHHHHhcCCcEEEeh
Confidence 88999999 99999999999987 3 458888877552 111 11 122234456666777778999999
Q ss_pred ccccCCC---------Ch--HHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCCC
Q 003769 687 DLDDHKV---------DS--CYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDSL 733 (796)
Q Consensus 687 eieka~~---------~~--~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~~ 733 (796)
|||..+- |. ..+.+-|+.-+| |. . +-.+.|||.|||.-
T Consensus 252 EiD~l~~~r~~~~~g~~~~~~~~ln~lL~~md-g~-~-------~~~~vivIaaTN~p 300 (644)
T PRK10733 252 EIDAVGRQRGAGLGGGHDEREQTLNQMLVEMD-GF-E-------GNEGIIVIAATNRP 300 (644)
T ss_pred hHhhhhhccCCCCCCCchHHHHHHHHHHHhhh-cc-c-------CCCCeeEEEecCCh
Confidence 9997511 22 024444554443 21 1 12457888999863
No 293
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.44 E-value=0.0011 Score=74.10 Aligned_cols=94 Identities=14% Similarity=0.082 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHhh--ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCC--CCCceEEEeecccccccchHHHHHHHHHH
Q 003769 193 SDDVMSVLNALIN--KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGD--LRYAQFISLPLFSFRNQSKGEVEQKLVEL 268 (796)
Q Consensus 193 ~~ei~~vi~~L~r--~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~--L~~~~v~~l~~~~l~a~~rge~E~rl~~l 268 (796)
+.-++.+.+.+.. -..+.+|+||||+|||++++.++..+.....+.. --+..++.++.... .. .+.++++
T Consensus 23 ~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~----~~~i~~l 96 (367)
T PRK14970 23 SHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASN--NS----VDDIRNL 96 (367)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccC--CC----HHHHHHH
Confidence 3444445555554 3346778999999999999999998865322211 11234444442211 11 1335566
Q ss_pred HHHHHhcc--CCCEEEEEcchhhhhh
Q 003769 269 SCHVKSYM--GRGIVLYLGDLKWVAE 292 (796)
Q Consensus 269 ~~~v~~~~--~~~~ILfIDElh~l~~ 292 (796)
++++.... ++.-|+||||++.+..
T Consensus 97 ~~~~~~~p~~~~~kiviIDE~~~l~~ 122 (367)
T PRK14970 97 IDQVRIPPQTGKYKIYIIDEVHMLSS 122 (367)
T ss_pred HHHHhhccccCCcEEEEEeChhhcCH
Confidence 66554321 3457999999997754
No 294
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.44 E-value=0.0013 Score=78.14 Aligned_cols=81 Identities=11% Similarity=0.060 Sum_probs=47.8
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCC--------------CCCCceEEEeecccccccchHHHHHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPG--------------DLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHV 272 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~--------------~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v 272 (796)
..+.+|.||||||||++++.||+.+....-+. .-....++.+|... .....+ +++|++.+
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~--~~~Id~----iR~L~~~~ 111 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGAS--NRGIDD----AKRLKEAI 111 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEeccc--ccCHHH----HHHHHHHH
Confidence 35677899999999999999999886321010 00122356665321 112222 33344443
Q ss_pred Hhc--cCCCEEEEEcchhhhhhh
Q 003769 273 KSY--MGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 273 ~~~--~~~~~ILfIDElh~l~~~ 293 (796)
... .++..|+||||+|.+...
T Consensus 112 ~~~p~~g~~kVIIIDEad~Lt~~ 134 (624)
T PRK14959 112 GYAPMEGRYKVFIIDEAHMLTRE 134 (624)
T ss_pred HhhhhcCCceEEEEEChHhCCHH
Confidence 321 145679999999998653
No 295
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.44 E-value=0.00025 Score=76.51 Aligned_cols=140 Identities=16% Similarity=0.264 Sum_probs=70.6
Q ss_pred HHHHHHHhhccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHH-HHhc
Q 003769 197 MSVLNALINKKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCH-VKSY 275 (796)
Q Consensus 197 ~~vi~~L~r~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~-v~~~ 275 (796)
..+++.|...+++++|+||+|+|||++++...+.+... ...+..++.++... -..++++++. +.+.
T Consensus 23 ~~ll~~l~~~~~pvLl~G~~GtGKT~li~~~l~~l~~~-------~~~~~~~~~s~~Tt------s~~~q~~ie~~l~k~ 89 (272)
T PF12775_consen 23 SYLLDLLLSNGRPVLLVGPSGTGKTSLIQNFLSSLDSD-------KYLVITINFSAQTT------SNQLQKIIESKLEKR 89 (272)
T ss_dssp HHHHHHHHHCTEEEEEESSTTSSHHHHHHHHHHCSTTC-------CEEEEEEES-TTHH------HHHHHHCCCTTECEC
T ss_pred HHHHHHHHHcCCcEEEECCCCCchhHHHHhhhccCCcc-------ccceeEeeccCCCC------HHHHHHHHhhcEEcC
Confidence 34555565578899999999999999999876543211 12244455443221 1122222211 0000
Q ss_pred c--------CCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC--CC--------CcEEEEE
Q 003769 276 M--------GRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG--ES--------ERVWIMG 337 (796)
Q Consensus 276 ~--------~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~--~~--------G~l~~IG 337 (796)
. ++.+|+||||++.-.... +|... +++. |+.++.+-| .+ -++.+||
T Consensus 90 ~~~~~gP~~~k~lv~fiDDlN~p~~d~---ygtq~---------~iEl----LRQ~i~~~g~yd~~~~~~~~i~~i~~va 153 (272)
T PF12775_consen 90 RGRVYGPPGGKKLVLFIDDLNMPQPDK---YGTQP---------PIEL----LRQLIDYGGFYDRKKLEWKSIEDIQFVA 153 (272)
T ss_dssp TTEEEEEESSSEEEEEEETTT-S---T---TS--H---------HHHH----HHHHHHCSEEECTTTTEEEEECSEEEEE
T ss_pred CCCCCCCCCCcEEEEEecccCCCCCCC---CCCcC---------HHHH----HHHHHHhcCcccCCCcEEEEEeeeEEEE
Confidence 0 457899999999765431 12211 2222 445663322 11 1378899
Q ss_pred ecChHHHHHhhhcCccccccccceecccCC
Q 003769 338 IASFQTYTRCKAGHPSLENMWKLHPFTIPV 367 (796)
Q Consensus 338 atT~~ey~k~~~~dpaLerrf~lq~V~vp~ 367 (796)
|.++.. -+ ....|.|-|.|....++.|+
T Consensus 154 a~~p~~-Gr-~~is~R~~r~f~i~~~~~p~ 181 (272)
T PF12775_consen 154 AMNPTG-GR-NPISPRFLRHFNILNIPYPS 181 (272)
T ss_dssp EESSTT-T---SHHHHHHTTEEEEE----T
T ss_pred ecCCCC-CC-CCCChHHhhheEEEEecCCC
Confidence 987642 11 13456777776544444454
No 296
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.43 E-value=0.0015 Score=72.27 Aligned_cols=95 Identities=15% Similarity=0.131 Sum_probs=57.1
Q ss_pred ChHHHHHHHHHHhh-cc-CceEEEcCCcccHHHHHHHHHHHHHcCCCCC--------------CCCCceEEEeecccccc
Q 003769 192 DSDDVMSVLNALIN-KK-RNTVIVGGNLAAIEGVIRGIIDQFERGQVPG--------------DLRYAQFISLPLFSFRN 255 (796)
Q Consensus 192 r~~ei~~vi~~L~r-~k-~n~vLvGepGvGKTaiv~~la~ri~~~~vp~--------------~L~~~~v~~l~~~~l~a 255 (796)
.++.+..+.+.+.+ +. +..+|+||||+|||++++.+++.+...+.+. ......++.++....
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~~-- 96 (355)
T TIGR02397 19 QEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAASN-- 96 (355)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeecccc--
Confidence 45555666666655 33 3467899999999999999999886443221 011234555554311
Q ss_pred cchHHHHHHHHHHHHHHHhcc--CCCEEEEEcchhhhhh
Q 003769 256 QSKGEVEQKLVELSCHVKSYM--GRGIVLYLGDLKWVAE 292 (796)
Q Consensus 256 ~~rge~E~rl~~l~~~v~~~~--~~~~ILfIDElh~l~~ 292 (796)
.... .++++++.+.... ++.-|++|||++.+..
T Consensus 97 ~~~~----~~~~l~~~~~~~p~~~~~~vviidea~~l~~ 131 (355)
T TIGR02397 97 NGVD----DIREILDNVKYAPSSGKYKVYIIDEVHMLSK 131 (355)
T ss_pred CCHH----HHHHHHHHHhcCcccCCceEEEEeChhhcCH
Confidence 1122 2456666655321 3456999999987744
No 297
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.42 E-value=0.0014 Score=77.01 Aligned_cols=119 Identities=17% Similarity=0.154 Sum_probs=67.1
Q ss_pred HHHHHHHH-HHhh-ccCce-EEEcCCcccHHHHHHHHHHHHHcCCC----CC----------CCCCceEEEeeccccccc
Q 003769 194 DDVMSVLN-ALIN-KKRNT-VIVGGNLAAIEGVIRGIIDQFERGQV----PG----------DLRYAQFISLPLFSFRNQ 256 (796)
Q Consensus 194 ~ei~~vi~-~L~r-~k~n~-vLvGepGvGKTaiv~~la~ri~~~~v----p~----------~L~~~~v~~l~~~~l~a~ 256 (796)
+.+.+.+. .+.. +..+. +|.||||+|||++++.+|+.+....- |- .-....++.+|.++ ..
T Consensus 22 ~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~--~~ 99 (527)
T PRK14969 22 EHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAAS--NT 99 (527)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccc--cC
Confidence 34433333 3333 44555 78899999999999999998843110 10 00112455555432 11
Q ss_pred chHHHHHHHHHHHHHHHhcc--CCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEE
Q 003769 257 SKGEVEQKLVELSCHVKSYM--GRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVW 334 (796)
Q Consensus 257 ~rge~E~rl~~l~~~v~~~~--~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~ 334 (796)
.. ..++++++.+.... ++.-|+||||+|.+... +.|.-||.|-. -.+.+.
T Consensus 100 ~v----d~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~---------------------a~naLLK~LEe---pp~~~~ 151 (527)
T PRK14969 100 QV----DAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKS---------------------AFNAMLKTLEE---PPEHVK 151 (527)
T ss_pred CH----HHHHHHHHHHhhCcccCCceEEEEcCcccCCHH---------------------HHHHHHHHHhC---CCCCEE
Confidence 11 23556666654321 34579999999988543 33441333321 146788
Q ss_pred EEEecChH
Q 003769 335 IMGIASFQ 342 (796)
Q Consensus 335 ~IGatT~~ 342 (796)
+|.+||..
T Consensus 152 fIL~t~d~ 159 (527)
T PRK14969 152 FILATTDP 159 (527)
T ss_pred EEEEeCCh
Confidence 88888753
No 298
>PRK04132 replication factor C small subunit; Provisional
Probab=97.40 E-value=0.00039 Score=85.10 Aligned_cols=99 Identities=19% Similarity=0.291 Sum_probs=70.6
Q ss_pred CCeEEEEec--CCCCCchHHHHHHHHHHHHcCCC-CCceEEecCCCCccccccccccCCCCCCCCCCchh-hHHHHHHh-
Q 003769 603 EQTWLLFLG--ADDHNHGKEKIAREIAKVVFGSH-SNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIE-RLGLALNE- 677 (796)
Q Consensus 603 ~~~~~lf~G--p~g~~vGKt~lAk~LA~~~fg~~-~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~-~L~eavr~- 677 (796)
|.---|+.| |.+ +|||++|++||+.+||.. ..+++.+|-|+.. .-. -+. .+-++.+.
T Consensus 563 ~~~~~~~~G~lPh~--lGKTT~A~ala~~l~g~~~~~~~lElNASd~r-gid---------------~IR~iIk~~a~~~ 624 (846)
T PRK04132 563 PGYHNFIGGNLPTV--LHNTTAALALARELFGENWRHNFLELNASDER-GIN---------------VIREKVKEFARTK 624 (846)
T ss_pred CchhhhhcCCCCCc--ccHHHHHHHHHHhhhcccccCeEEEEeCCCcc-cHH---------------HHHHHHHHHHhcC
Confidence 433445678 888 999999999999999962 1578999988541 111 111 11121211
Q ss_pred ----CCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCCC
Q 003769 678 ----NPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDSL 733 (796)
Q Consensus 678 ----~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~~ 733 (796)
.+|.||+|||+|+. .. +.|+.|+..||+ .=.++.|||+||..
T Consensus 625 ~~~~~~~KVvIIDEaD~L--t~-~AQnALLk~lEe-----------p~~~~~FILi~N~~ 670 (846)
T PRK04132 625 PIGGASFKIIFLDEADAL--TQ-DAQQALRRTMEM-----------FSSNVRFILSCNYS 670 (846)
T ss_pred CcCCCCCEEEEEECcccC--CH-HHHHHHHHHhhC-----------CCCCeEEEEEeCCh
Confidence 35789999999999 99 999999999986 11467899999853
No 299
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.38 E-value=0.00052 Score=80.86 Aligned_cols=90 Identities=13% Similarity=0.141 Sum_probs=58.9
Q ss_pred ChHHHHHHHHHHhh---ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHH---
Q 003769 192 DSDDVMSVLNALIN---KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKL--- 265 (796)
Q Consensus 192 r~~ei~~vi~~L~r---~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl--- 265 (796)
.+..++++++.+.+ ...+++|+||+|||||.+|+.|...-.+ ++..|+.+|.+.+.. ..++..|
T Consensus 201 ~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r-------~~~pfv~i~c~~~~~---~~~~~~lfg~ 270 (534)
T TIGR01817 201 KSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPR-------AKRPFVKVNCAALSE---TLLESELFGH 270 (534)
T ss_pred CCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCC-------CCCCeEEeecCCCCH---HHHHHHHcCC
Confidence 67777777777766 6667888899999999999999875322 356899999877632 1122211
Q ss_pred -HHH--------HHHHHhccCCCEEEEEcchhhhhhh
Q 003769 266 -VEL--------SCHVKSYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 266 -~~l--------~~~v~~~~~~~~ILfIDElh~l~~~ 293 (796)
+.. ...+.. ..+-.|||||++.|-..
T Consensus 271 ~~~~~~~~~~~~~g~~~~--a~~GtL~ldei~~L~~~ 305 (534)
T TIGR01817 271 EKGAFTGAIAQRKGRFEL--ADGGTLFLDEIGEISPA 305 (534)
T ss_pred CCCccCCCCcCCCCcccc--cCCCeEEEechhhCCHH
Confidence 000 000112 23567999999988654
No 300
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.38 E-value=0.0015 Score=77.46 Aligned_cols=91 Identities=12% Similarity=0.107 Sum_probs=56.8
Q ss_pred HHHHHHHHhh-ccCc-eEEEcCCcccHHHHHHHHHHHHHcCCCCC--------------CCCCceEEEeecccccccchH
Q 003769 196 VMSVLNALIN-KKRN-TVIVGGNLAAIEGVIRGIIDQFERGQVPG--------------DLRYAQFISLPLFSFRNQSKG 259 (796)
Q Consensus 196 i~~vi~~L~r-~k~n-~vLvGepGvGKTaiv~~la~ri~~~~vp~--------------~L~~~~v~~l~~~~l~a~~rg 259 (796)
++.+.+.+.. +-.+ .+|.||+|+|||++++.+|+.+....-+. ......|+.+|.++-. |
T Consensus 25 ~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas~~----~ 100 (559)
T PRK05563 25 TKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAASNN----G 100 (559)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccccC----C
Confidence 3334444444 4445 56799999999999999999886432111 0223456777754311 1
Q ss_pred HHHHHHHHHHHHHHhcc--CCCEEEEEcchhhhhh
Q 003769 260 EVEQKLVELSCHVKSYM--GRGIVLYLGDLKWVAE 292 (796)
Q Consensus 260 e~E~rl~~l~~~v~~~~--~~~~ILfIDElh~l~~ 292 (796)
-..++++++.+.... ++.-|+||||+|.|..
T Consensus 101 --vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~ 133 (559)
T PRK05563 101 --VDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST 133 (559)
T ss_pred --HHHHHHHHHHHhhCcccCCeEEEEEECcccCCH
Confidence 124567777766421 4567999999998854
No 301
>PHA00729 NTP-binding motif containing protein
Probab=97.38 E-value=0.00042 Score=72.65 Aligned_cols=36 Identities=14% Similarity=0.044 Sum_probs=31.0
Q ss_pred HHHHHHHhh-ccCceEEEcCCcccHHHHHHHHHHHHH
Q 003769 197 MSVLNALIN-KKRNTVIVGGNLAAIEGVIRGIIDQFE 232 (796)
Q Consensus 197 ~~vi~~L~r-~k~n~vLvGepGvGKTaiv~~la~ri~ 232 (796)
+++++.|.. ...|++|+|+||||||+++.+|+.++.
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456677766 677999999999999999999999874
No 302
>PRK06526 transposase; Provisional
Probab=97.37 E-value=0.00018 Score=76.88 Aligned_cols=88 Identities=13% Similarity=0.136 Sum_probs=56.6
Q ss_pred eEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHh-CCCEEE
Q 003769 605 TWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNE-NPHRVF 683 (796)
Q Consensus 605 ~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~-~P~~Vv 683 (796)
..++|+||+| +|||.||.+|+..+.... ....-+.+++. .+...... . . +.+.+.+++ ..+.||
T Consensus 99 ~nlll~Gp~G--tGKThLa~al~~~a~~~g-~~v~f~t~~~l-~~~l~~~~----~---~----~~~~~~l~~l~~~dlL 163 (254)
T PRK06526 99 ENVVFLGPPG--TGKTHLAIGLGIRACQAG-HRVLFATAAQW-VARLAAAH----H---A----GRLQAELVKLGRYPLL 163 (254)
T ss_pred ceEEEEeCCC--CchHHHHHHHHHHHHHCC-CchhhhhHHHH-HHHHHHHH----h---c----CcHHHHHHHhccCCEE
Confidence 4689999999 999999999998876443 33333333322 11111100 0 0 122223332 457899
Q ss_pred EEcccccCCCChHHHHHHHHHHHHc
Q 003769 684 FMEDLDDHKVDSCYCQKGLKQAIEN 708 (796)
Q Consensus 684 l~deieka~~~~~~v~~~l~q~~d~ 708 (796)
+|||+.....++ ...+.|.++++.
T Consensus 164 IIDD~g~~~~~~-~~~~~L~~li~~ 187 (254)
T PRK06526 164 IVDEVGYIPFEP-EAANLFFQLVSS 187 (254)
T ss_pred EEcccccCCCCH-HHHHHHHHHHHH
Confidence 999999775578 888999999974
No 303
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.37 E-value=0.0005 Score=83.79 Aligned_cols=59 Identities=20% Similarity=0.371 Sum_probs=53.5
Q ss_pred ccHHHHHHHHHHHHHHHhccchhhhhhhcccccccccCHHHHHHHHhcCChHHHHHHHcCCChHHHHHHHHh
Q 003769 103 LSNALVAAFKRAQAHQRRGSIENQQQQQQQPVLALKIEVEQLVISILDDPSVSRVMREAGFSSSQVKIKVEE 174 (796)
Q Consensus 103 ~S~~l~~aL~~A~~~a~~~~lg~~~~~~~~~~l~~kI~~eHLLLALL~d~~~a~vL~~~Gis~~~l~~~v~~ 174 (796)
+++.+..+|..|...|++ ++|.+ |+++|||++|++++.+..+|+++|++...+++.+..
T Consensus 2 ~~~~~~~~l~~a~~~a~~--~~~~~-----------~~~~h~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (758)
T PRK11034 2 LNQELELSLNMAFARARE--HRHEF-----------MTVEHLLLALLSNPSAREALEACSVDLVALRQELEA 60 (758)
T ss_pred cCHHHHHHHHHHHHHHHH--cCCCc-----------chHHHHHHHHHcChhHHHHHHHcCCCHHHHHHHHHH
Confidence 688999999999999998 88998 999999999999877889999999999988887763
No 304
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.37 E-value=0.00058 Score=77.38 Aligned_cols=58 Identities=19% Similarity=0.250 Sum_probs=51.3
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc-cchH-HHHHHHHHHHHHHHh
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN-QSKG-EVEQKLVELSCHVKS 274 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a-~~rg-e~E~rl~~l~~~v~~ 274 (796)
+.|++|+||||||||++++.||..+ +..|+.+|...+.. .|.| +.|..++++++.+..
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l----------~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~ 109 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLA----------NAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVK 109 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh----------CChheeecchhhccCCcccCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999875 46799999888886 7888 889999999998864
No 305
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.36 E-value=0.00079 Score=73.17 Aligned_cols=111 Identities=13% Similarity=0.150 Sum_probs=73.0
Q ss_pred cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCC----CCchhhHHHHHH
Q 003769 601 KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGC----CSYIERLGLALN 676 (796)
Q Consensus 601 ~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~----~~~~~~L~eavr 676 (796)
+|-.-.+||.||+| +||+.+|.++|+.++... ..-.+.-|. ...|.-...+. |...+ -+.+..|-+.+.
T Consensus 16 ~rl~HAyLf~G~~G--~Gk~~lA~~~A~~llC~~-~~~~c~~~~---~~~HPD~~~i~-p~~~~~~I~idqiR~l~~~~~ 88 (290)
T PRK05917 16 QKVPSAIILHGQDL--SNLSARAYELASLILKET-SPEAAYKIS---QKIHPDIHEFS-PQGKGRLHSIETPRAIKKQIW 88 (290)
T ss_pred CCcCeeEeeECCCC--CcHHHHHHHHHHHHhCCC-CccHHHHHh---cCCCCCEEEEe-cCCCCCcCcHHHHHHHHHHHh
Confidence 44455788999999 999999999999999854 221111111 11121110011 11111 112235666666
Q ss_pred hCCC----EEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 677 ENPH----RVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 677 ~~P~----~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
..|+ +|++||++|+. ++ +.+|.||..+|+ +=.+++|||.|+.
T Consensus 89 ~~p~e~~~kv~ii~~ad~m--t~-~AaNaLLK~LEE-----------Pp~~~~fiL~~~~ 134 (290)
T PRK05917 89 IHPYESPYKIYIIHEADRM--TL-DAISAFLKVLED-----------PPQHGVIILTSAK 134 (290)
T ss_pred hCccCCCceEEEEechhhc--CH-HHHHHHHHHhhc-----------CCCCeEEEEEeCC
Confidence 6665 89999999999 99 999999999976 3478999998864
No 306
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.36 E-value=0.0014 Score=78.16 Aligned_cols=91 Identities=15% Similarity=0.177 Sum_probs=53.4
Q ss_pred HHHHHHHhh-ccCce-EEEcCCcccHHHHHHHHHHHHHcCCC---------C----------CCCCCceEEEeecccccc
Q 003769 197 MSVLNALIN-KKRNT-VIVGGNLAAIEGVIRGIIDQFERGQV---------P----------GDLRYAQFISLPLFSFRN 255 (796)
Q Consensus 197 ~~vi~~L~r-~k~n~-vLvGepGvGKTaiv~~la~ri~~~~v---------p----------~~L~~~~v~~l~~~~l~a 255 (796)
+.+.+.+.. +..+. +|.|++|+|||++++.||+.+....- | +.-....++.+|.++-
T Consensus 26 ~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas~-- 103 (618)
T PRK14951 26 QALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAASN-- 103 (618)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCcccc--
Confidence 333444444 44455 78899999999999999998863210 1 0011224566654321
Q ss_pred cchHHHHHHHHHHHHHHHhcc--CCCEEEEEcchhhhhhh
Q 003769 256 QSKGEVEQKLVELSCHVKSYM--GRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 256 ~~rge~E~rl~~l~~~v~~~~--~~~~ILfIDElh~l~~~ 293 (796)
...+ -++++++.+.... ++.-|++|||+|.|...
T Consensus 104 ~~Vd----~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~ 139 (618)
T PRK14951 104 RGVD----EVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT 139 (618)
T ss_pred cCHH----HHHHHHHHHHhCcccCCceEEEEEChhhCCHH
Confidence 1122 2455555554321 34569999999998654
No 307
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.33 E-value=0.00097 Score=79.46 Aligned_cols=122 Identities=18% Similarity=0.214 Sum_probs=79.0
Q ss_pred HHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCC----C-CCC-C-
Q 003769 594 TILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVE----L-GCC-S- 666 (796)
Q Consensus 594 ~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~----~-~~~-~- 666 (796)
+++.+-.+..+|-+|+.|+.| +|||.+|+.|+..+-+ . ..|+++..+.. +. .+.|..+ . .|. .
T Consensus 6 Al~l~av~p~~g~vLl~G~~G--tgKs~lar~l~~~~~~-~-~pfv~i~~~~t--~d----~L~G~idl~~~~~~g~~~~ 75 (589)
T TIGR02031 6 ALTLLAVDPSLGGVAIRARAG--TGKTALARALAEILPP-I-MPFVELPLGVT--ED----RLIGGIDVEESLAGGQRVT 75 (589)
T ss_pred HHHHhccCCCcceEEEEcCCC--cHHHHHHHHHHHhCCc-C-CCeEecCcccc--hh----hcccchhhhhhhhcCcccC
Confidence 333333344589999999999 9999999999998744 2 45888885311 11 1111110 0 000 0
Q ss_pred chhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEec-CCCceecC-CcEEEEeeCCC
Q 003769 667 YIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIAL-ADGEIVPL-KDSIIIFSCDS 732 (796)
Q Consensus 667 ~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d-~~G~~v~~-~n~IiilTsn~ 732 (796)
..|.|.+ -...|+++|||+.+ .+ .+++.|+++|++|.++- ..|....+ .++.||.|+|.
T Consensus 76 ~~G~L~~----A~~GvL~lDEi~rl--~~-~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np 136 (589)
T TIGR02031 76 QPGLLDE----APRGVLYVDMANLL--DD-GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDP 136 (589)
T ss_pred CCCCeee----CCCCcEeccchhhC--CH-HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCC
Confidence 0122222 23369999999999 99 99999999999999653 23544443 36778888873
No 308
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.30 E-value=0.00036 Score=67.25 Aligned_cols=125 Identities=18% Similarity=0.158 Sum_probs=68.1
Q ss_pred HHHHHHHhhccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhcc
Q 003769 197 MSVLNALINKKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYM 276 (796)
Q Consensus 197 ~~vi~~L~r~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~ 276 (796)
++-+..++....+++|+||||+||+.+|+.|...-... ...|+.++...+- .++++.+
T Consensus 11 ~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~-------~~~~~~~~~~~~~-----------~~~l~~a---- 68 (138)
T PF14532_consen 11 RRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRA-------NGPFIVIDCASLP-----------AELLEQA---- 68 (138)
T ss_dssp HHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTC-------CS-CCCCCHHCTC-----------HHHHHHC----
T ss_pred HHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCcc-------CCCeEEechhhCc-----------HHHHHHc----
Confidence 33344444477788899999999999999888743221 2234444433322 2333332
Q ss_pred CCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChH--HHHHhhhcCccc
Q 003769 277 GRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQ--TYTRCKAGHPSL 354 (796)
Q Consensus 277 ~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~--ey~k~~~~dpaL 354 (796)
.+..|||+|++.|-... -.. |-.++... .+.++++|.+++.+ +..+--.-++.|
T Consensus 69 -~~gtL~l~~i~~L~~~~------------------Q~~----L~~~l~~~-~~~~~RlI~ss~~~l~~l~~~~~~~~~L 124 (138)
T PF14532_consen 69 -KGGTLYLKNIDRLSPEA------------------QRR----LLDLLKRQ-ERSNVRLIASSSQDLEELVEEGRFSPDL 124 (138)
T ss_dssp -TTSEEEEECGCCS-HHH------------------HHH----HHHHHHHC-TTTTSEEEEEECC-CCCHHHHSTHHHHH
T ss_pred -CCCEEEECChHHCCHHH------------------HHH----HHHHHHhc-CCCCeEEEEEeCCCHHHHhhccchhHHH
Confidence 35689999999887641 111 22233211 24567888887643 322222345666
Q ss_pred cccccceecccCC
Q 003769 355 ENMWKLHPFTIPV 367 (796)
Q Consensus 355 errf~lq~V~vp~ 367 (796)
-.++.-..|.+|+
T Consensus 125 ~~~l~~~~i~lPp 137 (138)
T PF14532_consen 125 YYRLSQLEIHLPP 137 (138)
T ss_dssp HHHCSTCEEEE--
T ss_pred HHHhCCCEEeCCC
Confidence 6666666666664
No 309
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.30 E-value=0.00069 Score=72.04 Aligned_cols=105 Identities=12% Similarity=0.148 Sum_probs=66.8
Q ss_pred CeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCc-hhhHHHHHHhCCCEE
Q 003769 604 QTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSY-IERLGLALNENPHRV 682 (796)
Q Consensus 604 ~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~-~~~L~eavr~~P~~V 682 (796)
..+|+|.||+| +|||.||.+||..+.... ...+.+++++. .... + . .|..... ...+.+.+. -++|
T Consensus 99 ~~~~~l~G~~G--tGKThLa~aia~~l~~~g-~~v~~it~~~l-~~~l---~--~--~~~~~~~~~~~~l~~l~--~~dl 165 (244)
T PRK07952 99 IASFIFSGKPG--TGKNHLAAAICNELLLRG-KSVLIITVADI-MSAM---K--D--TFSNSETSEEQLLNDLS--NVDL 165 (244)
T ss_pred CceEEEECCCC--CCHHHHHHHHHHHHHhcC-CeEEEEEHHHH-HHHH---H--H--HHhhccccHHHHHHHhc--cCCE
Confidence 35899999999 999999999999887655 56777776543 1111 0 0 0110111 134555555 3779
Q ss_pred EEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 683 FFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 683 vl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
++||||....... ....+|.++++. |.. + +--+|+|||.
T Consensus 166 LvIDDig~~~~s~-~~~~~l~~Ii~~-Ry~--~-------~~~tiitSNl 204 (244)
T PRK07952 166 LVIDEIGVQTESR-YEKVIINQIVDR-RSS--S-------KRPTGMLTNS 204 (244)
T ss_pred EEEeCCCCCCCCH-HHHHHHHHHHHH-HHh--C-------CCCEEEeCCC
Confidence 9999998763344 556688889976 333 1 1236778883
No 310
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.29 E-value=0.00094 Score=70.44 Aligned_cols=82 Identities=5% Similarity=0.144 Sum_probs=48.8
Q ss_pred CeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCEEE
Q 003769 604 QTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHRVF 683 (796)
Q Consensus 604 ~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vv 683 (796)
..+++|.||.| +|||.|+.+++..+.... .....+.+.... .+...+-+.+++ +.+|
T Consensus 45 ~~~l~l~Gp~G--~GKThLl~a~~~~~~~~~-~~v~y~~~~~~~------------------~~~~~~~~~~~~--~dll 101 (235)
T PRK08084 45 SGYIYLWSREG--AGRSHLLHAACAELSQRG-RAVGYVPLDKRA------------------WFVPEVLEGMEQ--LSLV 101 (235)
T ss_pred CCeEEEECCCC--CCHHHHHHHHHHHHHhCC-CeEEEEEHHHHh------------------hhhHHHHHHhhh--CCEE
Confidence 35899999999 999999999998876432 333334332110 011122333332 4799
Q ss_pred EEcccccCCCChHH----HHHHHHHHHHcc
Q 003769 684 FMEDLDDHKVDSCY----CQKGLKQAIENG 709 (796)
Q Consensus 684 l~deieka~~~~~~----v~~~l~q~~d~G 709 (796)
+||||+.-..++ . +|.+|....+.|
T Consensus 102 iiDdi~~~~~~~-~~~~~lf~l~n~~~e~g 130 (235)
T PRK08084 102 CIDNIECIAGDE-LWEMAIFDLYNRILESG 130 (235)
T ss_pred EEeChhhhcCCH-HHHHHHHHHHHHHHHcC
Confidence 999998652233 3 345555555443
No 311
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=97.28 E-value=0.00016 Score=74.58 Aligned_cols=38 Identities=8% Similarity=0.098 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHhhccCceEEEcCCcccHHHHHHHHHHH
Q 003769 193 SDDVMSVLNALINKKRNTVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 193 ~~ei~~vi~~L~r~k~n~vLvGepGvGKTaiv~~la~r 230 (796)
.++.++.+++=+-...|++|+||||+|||++++.+..-
T Consensus 8 Qe~aKrAL~iAAaG~h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 8 QEEAKRALEIAAAGGHHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp THHHHHHHHHHHHCC--EEEES-CCCTHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHcCCCCeEEECCCCCCHHHHHHHHHHh
Confidence 46667777665556789999999999999999999863
No 312
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.27 E-value=0.0019 Score=78.49 Aligned_cols=89 Identities=15% Similarity=0.153 Sum_probs=58.1
Q ss_pred ChHHHHHHHHHHhh---ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc-cch---------
Q 003769 192 DSDDVMSVLNALIN---KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN-QSK--------- 258 (796)
Q Consensus 192 r~~ei~~vi~~L~r---~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a-~~r--------- 258 (796)
+..-++++++.+.+ ...+++|+||+|||||.+|++|-..-. .++..|+.+|...+.. .+.
T Consensus 381 ~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~-------r~~~~~v~i~c~~~~~~~~~~~lfg~~~~ 453 (686)
T PRK15429 381 RSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG-------RNNRRMVKMNCAAMPAGLLESDLFGHERG 453 (686)
T ss_pred cCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC-------CCCCCeEEEecccCChhHhhhhhcCcccc
Confidence 67777777766665 556788889999999999999976432 2457899999876532 111
Q ss_pred ---HHHHHHHHHHHHHHHhccCCCEEEEEcchhhhhhh
Q 003769 259 ---GEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 259 ---ge~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~ 293 (796)
|....++. .+.. ..+-.|||||++.|-..
T Consensus 454 ~~~g~~~~~~g----~le~--a~~GtL~Ldei~~L~~~ 485 (686)
T PRK15429 454 AFTGASAQRIG----RFEL--ADKSSLFLDEVGDMPLE 485 (686)
T ss_pred cccccccchhh----HHHh--cCCCeEEEechhhCCHH
Confidence 11111222 2222 23468999999987553
No 313
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.27 E-value=0.0011 Score=63.82 Aligned_cols=108 Identities=14% Similarity=0.190 Sum_probs=75.5
Q ss_pred CCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCC
Q 003769 582 PWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVE 661 (796)
Q Consensus 582 ~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~ 661 (796)
+|+..++..+.+.+.+... ....+|+.|+.| +||+.+|+.|...-.... ..|+.+|+....
T Consensus 1 vG~S~~~~~l~~~l~~~a~--~~~pvli~GE~G--tGK~~~A~~lh~~~~~~~-~~~~~~~~~~~~-------------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK--SSSPVLITGEPG--TGKSLLARALHRYSGRAN-GPFIVIDCASLP-------------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC--SSS-EEEECCTT--SSHHHHHHCCHHTTTTCC-S-CCCCCHHCTC--------------
T ss_pred CCCCHHHHHHHHHHHHHhC--CCCcEEEEcCCC--CCHHHHHHHHHhhcCccC-CCeEEechhhCc--------------
Confidence 5778888888888877654 233578999999 999999999999876655 666666664320
Q ss_pred CCCCCchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCC
Q 003769 662 LGCCSYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 662 ~~~~~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn 731 (796)
.+.+.+-.-..++|+|||.. ++ +.|..|++.++... . .|+=+|+||.
T Consensus 62 ----------~~~l~~a~~gtL~l~~i~~L--~~-~~Q~~L~~~l~~~~-------~---~~~RlI~ss~ 108 (138)
T PF14532_consen 62 ----------AELLEQAKGGTLYLKNIDRL--SP-EAQRRLLDLLKRQE-------R---SNVRLIASSS 108 (138)
T ss_dssp ----------HHHHHHCTTSEEEEECGCCS---H-HHHHHHHHHHHHCT-------T---TTSEEEEEEC
T ss_pred ----------HHHHHHcCCCEEEECChHHC--CH-HHHHHHHHHHHhcC-------C---CCeEEEEEeC
Confidence 22222235667899999999 99 99999999998832 1 2335777764
No 314
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.27 E-value=0.0033 Score=75.92 Aligned_cols=130 Identities=11% Similarity=0.080 Sum_probs=72.2
Q ss_pred HHHHHhh-ccCce-EEEcCCcccHHHHHHHHHHHHHcCCCCCC-----------CCCceEEEeecccccccchHHHHHHH
Q 003769 199 VLNALIN-KKRNT-VIVGGNLAAIEGVIRGIIDQFERGQVPGD-----------LRYAQFISLPLFSFRNQSKGEVEQKL 265 (796)
Q Consensus 199 vi~~L~r-~k~n~-vLvGepGvGKTaiv~~la~ri~~~~vp~~-----------L~~~~v~~l~~~~l~a~~rge~E~rl 265 (796)
+...+.. +-.+. ++.||+|+|||++++.+|+.+....-+.. -.+..++.++.++ ..... -+
T Consensus 30 L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaas--n~~vd----~I 103 (725)
T PRK07133 30 LKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAAS--NNGVD----EI 103 (725)
T ss_pred HHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccc--cCCHH----HH
Confidence 3344444 43444 78899999999999999998864321100 1122344444321 01112 25
Q ss_pred HHHHHHHHhcc--CCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHH
Q 003769 266 VELSCHVKSYM--GRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQT 343 (796)
Q Consensus 266 ~~l~~~v~~~~--~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~e 343 (796)
++|++.+.... ++.-|++|||+|.+... +.|. |...+.. -.+...+|.+||..
T Consensus 104 ReLie~~~~~P~~g~~KV~IIDEa~~LT~~---------------------A~NA-LLKtLEE--PP~~tifILaTte~- 158 (725)
T PRK07133 104 RELIENVKNLPTQSKYKIYIIDEVHMLSKS---------------------AFNA-LLKTLEE--PPKHVIFILATTEV- 158 (725)
T ss_pred HHHHHHHHhchhcCCCEEEEEEChhhCCHH---------------------HHHH-HHHHhhc--CCCceEEEEEcCCh-
Confidence 66777666421 44579999999988643 3333 3333311 14667778777632
Q ss_pred HHHhhhcCccccccccceeccc
Q 003769 344 YTRCKAGHPSLENMWKLHPFTI 365 (796)
Q Consensus 344 y~k~~~~dpaLerrf~lq~V~v 365 (796)
.+ .-|.+.+|. |.|..
T Consensus 159 -~K---Ll~TI~SRc--q~ieF 174 (725)
T PRK07133 159 -HK---IPLTILSRV--QRFNF 174 (725)
T ss_pred -hh---hhHHHHhhc--eeEEc
Confidence 12 245666664 45544
No 315
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.27 E-value=0.0023 Score=67.74 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=86.4
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDV 660 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~ 660 (796)
++|-++-...|.+...+.-..+|.--.|+.|+.| +|||.+.|+|...+.... =.+|.++-. .
T Consensus 29 L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rG--tGKSSlVkall~~y~~~G-LRlIev~k~-----~---------- 90 (249)
T PF05673_consen 29 LIGIERQKEALIENTEQFLQGLPANNVLLWGARG--TGKSSLVKALLNEYADQG-LRLIEVSKE-----D---------- 90 (249)
T ss_pred hcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCC--CCHHHHHHHHHHHHhhcC-ceEEEECHH-----H----------
Confidence 3455555556666677677777888899999999 999999999998886554 233333211 1
Q ss_pred CCCCCCchhhHHHHHHhCCCE-EEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 661 ELGCCSYIERLGLALNENPHR-VFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 661 ~~~~~~~~~~L~eavr~~P~~-Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
-.+...|.+.++.+|++ |||+|++--- ....-++.|+-++|-|--. + =.|++|..|||-
T Consensus 91 ----L~~l~~l~~~l~~~~~kFIlf~DDLsFe--~~d~~yk~LKs~LeGgle~----~---P~NvliyATSNR 150 (249)
T PF05673_consen 91 ----LGDLPELLDLLRDRPYKFILFCDDLSFE--EGDTEYKALKSVLEGGLEA----R---PDNVLIYATSNR 150 (249)
T ss_pred ----hccHHHHHHHHhcCCCCEEEEecCCCCC--CCcHHHHHHHHHhcCcccc----C---CCcEEEEEecch
Confidence 13456899999999998 5788998644 3225678888888765422 2 389999999995
No 316
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.26 E-value=0.00068 Score=84.15 Aligned_cols=59 Identities=25% Similarity=0.412 Sum_probs=53.4
Q ss_pred ccHHHHHHHHHHHHHHHhccchhhhhhhcccccccccCHHHHHHHHhcCC--hHHHHHHHcCCChHHHHHHHHh
Q 003769 103 LSNALVAAFKRAQAHQRRGSIENQQQQQQQPVLALKIEVEQLVISILDDP--SVSRVMREAGFSSSQVKIKVEE 174 (796)
Q Consensus 103 ~S~~l~~aL~~A~~~a~~~~lg~~~~~~~~~~l~~kI~~eHLLLALL~d~--~~a~vL~~~Gis~~~l~~~v~~ 174 (796)
||+.+..+|..|..+|++ ++|.| |+++|||+||++++ .+.++|..+|+++..+++.+..
T Consensus 1 fT~~a~~vL~~A~~~A~~--~~h~~-----------V~~EHLLlaLl~~~~g~a~~iL~~~Gvd~~~l~~~l~~ 61 (852)
T TIGR03346 1 FTEKFQEALQAAQSLALG--RDHQQ-----------IEPEHLLKALLDQEGGLARRLLQKAGVNVGALRQALEK 61 (852)
T ss_pred CCHHHHHHHHHHHHHHHH--cCCCc-----------ccHHHHHHHHHhCCccHHHHHHHHcCCCHHHHHHHHHH
Confidence 688999999999999998 89999 99999999999975 4689999999999999888773
No 317
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.0022 Score=75.56 Aligned_cols=80 Identities=13% Similarity=0.178 Sum_probs=60.4
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
+..|++|.|++|+|||.+|++++....+.. .++|..+|.+.+....-.-+..-+..++.+.-. ..|.|+++|
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~------~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~--~~PSiIvLD 501 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDL------IAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALW--YAPSIIVLD 501 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhcccc------ceEEEEEechhccchhHHHHHHHHHHHHHHHHh--hCCcEEEEc
Confidence 688999999999999999999999887432 356667777666554344455555555555554 579999999
Q ss_pred chhhhhhh
Q 003769 286 DLKWVAEF 293 (796)
Q Consensus 286 Elh~l~~~ 293 (796)
++|.|+++
T Consensus 502 dld~l~~~ 509 (952)
T KOG0735|consen 502 DLDCLASA 509 (952)
T ss_pred chhhhhcc
Confidence 99999984
No 318
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.24 E-value=0.0019 Score=72.81 Aligned_cols=141 Identities=13% Similarity=0.122 Sum_probs=82.6
Q ss_pred cCCCCCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCC-CCceEEecCCCCcccccc---
Q 003769 577 RKAVVPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSH-SNNFTNLSSSQSRQDDCR--- 652 (796)
Q Consensus 577 ~~~~v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~-~~~~i~~dms~~~~~~~~--- 652 (796)
+. ++|.++-+..|...+...-.......+++.||+| +|||.+++.+++.+-... .-.++.+++..+.....-
T Consensus 30 ~~--l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~G--tGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 30 EN--LPHREEQIEELAFALRPALRGSRPLNVLIYGPPG--TGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred CC--CCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCC--CCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 55 7888888888888886654433335688999999 999999999998874321 134678887654221110
Q ss_pred c-cccCC-CCCCCCCCc---hhhHHHHHHh-CCCEEEEEcccccCC--CChHHHHHHHHHHHHcceEecCCCceecCCcE
Q 003769 653 T-KKRSR-DVELGCCSY---IERLGLALNE-NPHRVFFMEDLDDHK--VDSCYCQKGLKQAIENGCIALADGEIVPLKDS 724 (796)
Q Consensus 653 ~-~k~~~-~~~~~~~~~---~~~L~eavr~-~P~~Vvl~deieka~--~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~ 724 (796)
. ....+ .....|..+ ...+.+.+.+ +.+.||+|||++... -.. +++..|++.+++- .+ .+.
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~-~~l~~l~~~~~~~-----~~-----~~v 174 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGN-DVLYSLLRAHEEY-----PG-----ARI 174 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCc-hHHHHHHHhhhcc-----CC-----CeE
Confidence 0 01111 111222222 2455556554 456789999999861 013 4555555555431 12 256
Q ss_pred EEEeeCCC
Q 003769 725 IIIFSCDS 732 (796)
Q Consensus 725 IiilTsn~ 732 (796)
.||+++|-
T Consensus 175 ~vI~i~~~ 182 (394)
T PRK00411 175 GVIGISSD 182 (394)
T ss_pred EEEEEECC
Confidence 67776653
No 319
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.21 E-value=0.0018 Score=70.10 Aligned_cols=95 Identities=13% Similarity=0.028 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHhh-ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHH
Q 003769 193 SDDVMSVLNALIN-KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCH 271 (796)
Q Consensus 193 ~~ei~~vi~~L~r-~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~ 271 (796)
+..|..+...+.| .-.|.+++||||||||+.+.++|..+.- +.++-.++.+++.+...... -.-++++..-+.
T Consensus 42 e~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~----~~~~~~rvl~lnaSderGis--vvr~Kik~fakl 115 (346)
T KOG0989|consen 42 EHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC----EQLFPCRVLELNASDERGIS--VVREKIKNFAKL 115 (346)
T ss_pred HHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC----ccccccchhhhccccccccc--chhhhhcCHHHH
Confidence 4455555556666 6678899999999999999999998753 46677888888887665521 122233322111
Q ss_pred HHhc-------cCCCEEEEEcchhhhhhh
Q 003769 272 VKSY-------MGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 272 v~~~-------~~~~~ILfIDElh~l~~~ 293 (796)
.-.. +...-|++|||.+.+...
T Consensus 116 ~~~~~~~~~~~~~~fKiiIlDEcdsmtsd 144 (346)
T KOG0989|consen 116 TVLLKRSDGYPCPPFKIIILDECDSMTSD 144 (346)
T ss_pred hhccccccCCCCCcceEEEEechhhhhHH
Confidence 1110 012269999999999754
No 320
>PRK10536 hypothetical protein; Provisional
Probab=97.21 E-value=0.0064 Score=65.02 Aligned_cols=45 Identities=9% Similarity=0.005 Sum_probs=37.1
Q ss_pred CCCChHHHHHHHHHHhhccCceEEEcCCcccHHHHHHHHHHH-HHcC
Q 003769 189 LGRDSDDVMSVLNALINKKRNTVIVGGNLAAIEGVIRGIIDQ-FERG 234 (796)
Q Consensus 189 ldpr~~ei~~vi~~L~r~k~n~vLvGepGvGKTaiv~~la~r-i~~~ 234 (796)
+.||+.....++..|.+ ...++++||+|||||.++.+++.. +.++
T Consensus 57 i~p~n~~Q~~~l~al~~-~~lV~i~G~aGTGKT~La~a~a~~~l~~~ 102 (262)
T PRK10536 57 ILARNEAQAHYLKAIES-KQLIFATGEAGCGKTWISAAKAAEALIHK 102 (262)
T ss_pred ccCCCHHHHHHHHHHhc-CCeEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 55688999999998875 458889999999999999999984 4344
No 321
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.21 E-value=0.0029 Score=60.83 Aligned_cols=24 Identities=4% Similarity=0.018 Sum_probs=21.4
Q ss_pred eEEEcCCcccHHHHHHHHHHHHHc
Q 003769 210 TVIVGGNLAAIEGVIRGIIDQFER 233 (796)
Q Consensus 210 ~vLvGepGvGKTaiv~~la~ri~~ 233 (796)
++|+|+||+|||+++..++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh
Confidence 578999999999999999988764
No 322
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.20 E-value=0.0035 Score=74.77 Aligned_cols=95 Identities=13% Similarity=0.110 Sum_probs=58.4
Q ss_pred ChHHHHHHHHHHhh-c-cCceEEEcCCcccHHHHHHHHHHHHHcCC--C---C----C----------CCCCceEEEeec
Q 003769 192 DSDDVMSVLNALIN-K-KRNTVIVGGNLAAIEGVIRGIIDQFERGQ--V---P----G----------DLRYAQFISLPL 250 (796)
Q Consensus 192 r~~ei~~vi~~L~r-~-k~n~vLvGepGvGKTaiv~~la~ri~~~~--v---p----~----------~L~~~~v~~l~~ 250 (796)
.+.-++.+...+.+ + ....+|.||+|+|||++++.+|+.+.... . | . .-....|+.++.
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a 108 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDA 108 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecc
Confidence 44555555566665 4 34578899999999999999999885321 0 0 0 011234566654
Q ss_pred ccccccchHHHHHHHHHHHHHHHhcc--CCCEEEEEcchhhhhh
Q 003769 251 FSFRNQSKGEVEQKLVELSCHVKSYM--GRGIVLYLGDLKWVAE 292 (796)
Q Consensus 251 ~~l~a~~rge~E~rl~~l~~~v~~~~--~~~~ILfIDElh~l~~ 292 (796)
.+-. ..+ .+++|++.++... +..-|++|||+|.+..
T Consensus 109 ~s~~--gvd----~IReIie~~~~~P~~a~~KVvIIDEad~Ls~ 146 (598)
T PRK09111 109 ASHT--GVD----DIREIIESVRYRPVSARYKVYIIDEVHMLST 146 (598)
T ss_pred cccC--CHH----HHHHHHHHHHhchhcCCcEEEEEEChHhCCH
Confidence 4211 122 3666776665421 3456899999998864
No 323
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.20 E-value=0.0054 Score=71.79 Aligned_cols=93 Identities=18% Similarity=0.148 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhh--ccCce-EEEcCCcccHHHHHHHHHHHHHc-CCCCC------------CCCCceEEEeecccccccc
Q 003769 194 DDVMSVLNALIN--KKRNT-VIVGGNLAAIEGVIRGIIDQFER-GQVPG------------DLRYAQFISLPLFSFRNQS 257 (796)
Q Consensus 194 ~ei~~vi~~L~r--~k~n~-vLvGepGvGKTaiv~~la~ri~~-~~vp~------------~L~~~~v~~l~~~~l~a~~ 257 (796)
+.+...+....+ +..+. +|+||||+|||++++.+|..+.. +..+. ......|+.++... ...
T Consensus 20 ~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~--~~~ 97 (504)
T PRK14963 20 EHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAAS--NNS 97 (504)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccc--cCC
Confidence 344443333333 44444 88999999999999999999863 21110 01223466666432 111
Q ss_pred hHHHHHHHHHHHHHHHhcc--CCCEEEEEcchhhhhh
Q 003769 258 KGEVEQKLVELSCHVKSYM--GRGIVLYLGDLKWVAE 292 (796)
Q Consensus 258 rge~E~rl~~l~~~v~~~~--~~~~ILfIDElh~l~~ 292 (796)
.. .++++.+.+.... +..-|+||||+|.+..
T Consensus 98 vd----~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~ 130 (504)
T PRK14963 98 VE----DVRDLREKVLLAPLRGGRKVYILDEAHMMSK 130 (504)
T ss_pred HH----HHHHHHHHHhhccccCCCeEEEEECccccCH
Confidence 22 2455555554321 4567999999987643
No 324
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=97.20 E-value=0.0017 Score=78.19 Aligned_cols=87 Identities=13% Similarity=0.193 Sum_probs=56.9
Q ss_pred ChHHHHHHHHHHhh---ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHH
Q 003769 192 DSDDVMSVLNALIN---KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVEL 268 (796)
Q Consensus 192 r~~ei~~vi~~L~r---~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l 268 (796)
.+..++++++.+.+ ...+++|.||+||||+++|+.+-..-.+ ++..|+.+|.+.+-. ..++. ++
T Consensus 330 ~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r-------~~~pfv~vnc~~~~~---~~~~~---el 396 (638)
T PRK11388 330 DSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESER-------AAGPYIAVNCQLYPD---EALAE---EF 396 (638)
T ss_pred CCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCc-------cCCCeEEEECCCCCh---HHHHH---Hh
Confidence 56666666666665 5566888999999999999999764322 346799999876542 11221 12
Q ss_pred HH------------HHHhccCCCEEEEEcchhhhhhh
Q 003769 269 SC------------HVKSYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 269 ~~------------~v~~~~~~~~ILfIDElh~l~~~ 293 (796)
+. .+.. ..+-.|||||++.|-..
T Consensus 397 fg~~~~~~~~~~~g~~~~--a~~GtL~ldei~~l~~~ 431 (638)
T PRK11388 397 LGSDRTDSENGRLSKFEL--AHGGTLFLEKVEYLSPE 431 (638)
T ss_pred cCCCCcCccCCCCCceeE--CCCCEEEEcChhhCCHH
Confidence 21 1212 23567999999987654
No 325
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.19 E-value=0.0027 Score=76.05 Aligned_cols=131 Identities=11% Similarity=0.036 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHhh-c--cCceEEEcCCcccHHHHHHHHHHHHHcCCC--C---CCC-----------CCceEEEeecccc
Q 003769 193 SDDVMSVLNALIN-K--KRNTVIVGGNLAAIEGVIRGIIDQFERGQV--P---GDL-----------RYAQFISLPLFSF 253 (796)
Q Consensus 193 ~~ei~~vi~~L~r-~--k~n~vLvGepGvGKTaiv~~la~ri~~~~v--p---~~L-----------~~~~v~~l~~~~l 253 (796)
.+++...+..+.+ . ....+|+||+|+|||++++.+|+.+..... + ... ....++.++...
T Consensus 21 q~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~- 99 (620)
T PRK14948 21 QEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAAS- 99 (620)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccc-
Confidence 3444444443333 2 246688999999999999999998864211 0 000 111344444321
Q ss_pred cccchHHHHHHHHHHHHHHHhcc--CCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCC
Q 003769 254 RNQSKGEVEQKLVELSCHVKSYM--GRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESE 331 (796)
Q Consensus 254 ~a~~rge~E~rl~~l~~~v~~~~--~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G 331 (796)
+..-+.++++++.+.... ++.-|+||||+|.|-.. ++|. |...+.. -.+
T Consensus 100 -----~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~---------------------a~na-LLK~LEe--Pp~ 150 (620)
T PRK14948 100 -----NTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTA---------------------AFNA-LLKTLEE--PPP 150 (620)
T ss_pred -----cCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHH---------------------HHHH-HHHHHhc--CCc
Confidence 111245677776665321 34579999999988543 3343 3333311 146
Q ss_pred cEEEEEecChHHHHHhhhcCccccccc
Q 003769 332 RVWIMGIASFQTYTRCKAGHPSLENMW 358 (796)
Q Consensus 332 ~l~~IGatT~~ey~k~~~~dpaLerrf 358 (796)
.+.+|++|+. .+ + .-|.|..|.
T Consensus 151 ~tvfIL~t~~-~~-~---llpTIrSRc 172 (620)
T PRK14948 151 RVVFVLATTD-PQ-R---VLPTIISRC 172 (620)
T ss_pred CeEEEEEeCC-hh-h---hhHHHHhhe
Confidence 7888888863 22 1 335666654
No 326
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.19 E-value=0.00069 Score=76.40 Aligned_cols=132 Identities=21% Similarity=0.249 Sum_probs=82.1
Q ss_pred hccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhc---------
Q 003769 205 NKKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSY--------- 275 (796)
Q Consensus 205 r~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~--------- 275 (796)
....++++.||+||||+-+++.+- .+.... .+..|+++|.+.+-.. .-+.| ||-..+-+
T Consensus 99 p~~~~vLi~GetGtGKel~A~~iH-~~s~r~-----~~~PFI~~NCa~~~en-~~~~e-----LFG~~kGaftGa~~~k~ 166 (403)
T COG1221 99 PSGLPVLIIGETGTGKELFARLIH-ALSARR-----AEAPFIAFNCAAYSEN-LQEAE-----LFGHEKGAFTGAQGGKA 166 (403)
T ss_pred CCCCcEEEecCCCccHHHHHHHHH-Hhhhcc-----cCCCEEEEEHHHhCcC-HHHHH-----HhccccceeecccCCcC
Confidence 377899999999999999999887 454431 3568999998766441 11111 22211100
Q ss_pred ----cCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhh-----cCC----CCcEEEEEecChH
Q 003769 276 ----MGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFE-----IGE----SERVWIMGIASFQ 342 (796)
Q Consensus 276 ----~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~-----~~~----~G~l~~IGatT~~ 342 (796)
...+-+||+||||.|-.. | .+ . |-.+++. +|. .-.+++|+|||.+
T Consensus 167 Glfe~A~GGtLfLDEI~~LP~~-----~-Q~---------------k-Ll~~le~g~~~rvG~~~~~~~dVRli~AT~~~ 224 (403)
T COG1221 167 GLFEQANGGTLFLDEIHRLPPE-----G-QE---------------K-LLRVLEEGEYRRVGGSQPRPVDVRLICATTED 224 (403)
T ss_pred chheecCCCEEehhhhhhCCHh-----H-HH---------------H-HHHHHHcCceEecCCCCCcCCCceeeeccccC
Confidence 023678999999999764 1 00 0 3334421 221 2359999999998
Q ss_pred HHHHhhhcCccccccccceecccCCCCcccc
Q 003769 343 TYTRCKAGHPSLENMWKLHPFTIPVGSLSLS 373 (796)
Q Consensus 343 ey~k~~~~dpaLerrf~lq~V~vp~~~l~~s 373 (796)
-=...+.+ .-|.+|--...|.+|+ |+++
T Consensus 225 l~~~~~~g-~dl~~rl~~~~I~LPp--LrER 252 (403)
T COG1221 225 LEEAVLAG-ADLTRRLNILTITLPP--LRER 252 (403)
T ss_pred HHHHHHhh-cchhhhhcCceecCCC--hhhc
Confidence 87777777 5666653345555565 6654
No 327
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.19 E-value=0.00093 Score=67.06 Aligned_cols=85 Identities=15% Similarity=0.155 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhh---ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHH-
Q 003769 194 DDVMSVLNALIN---KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELS- 269 (796)
Q Consensus 194 ~ei~~vi~~L~r---~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~- 269 (796)
..++++++.+.+ ...+++|.||+||||+.+|+.+=..-. -++..|+.+|.+.+-. ..+|.. |+
T Consensus 6 ~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~-------r~~~pfi~vnc~~~~~---~~~e~~---LFG 72 (168)
T PF00158_consen 6 PAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSP-------RKNGPFISVNCAALPE---ELLESE---LFG 72 (168)
T ss_dssp HHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCST-------TTTS-EEEEETTTS-H---HHHHHH---HHE
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhh-------cccCCeEEEehhhhhc---chhhhh---hhc
Confidence 344445554444 667888899999999999998876322 1357899999886632 122221 21
Q ss_pred --------------HHHHhccCCCEEEEEcchhhhhhh
Q 003769 270 --------------CHVKSYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 270 --------------~~v~~~~~~~~ILfIDElh~l~~~ 293 (796)
-.+.+ ..+-.||||||+.|-..
T Consensus 73 ~~~~~~~~~~~~~~G~l~~--A~~GtL~Ld~I~~L~~~ 108 (168)
T PF00158_consen 73 HEKGAFTGARSDKKGLLEQ--ANGGTLFLDEIEDLPPE 108 (168)
T ss_dssp BCSSSSTTTSSEBEHHHHH--TTTSEEEEETGGGS-HH
T ss_pred cccccccccccccCCceee--ccceEEeecchhhhHHH
Confidence 12222 24568999999998765
No 328
>PF05729 NACHT: NACHT domain
Probab=97.18 E-value=0.0011 Score=64.17 Aligned_cols=82 Identities=16% Similarity=0.179 Sum_probs=47.6
Q ss_pred eEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc-c-----------chHHHHHHHHHHHHHHHhccC
Q 003769 210 TVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN-Q-----------SKGEVEQKLVELSCHVKSYMG 277 (796)
Q Consensus 210 ~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a-~-----------~rge~E~rl~~l~~~v~~~~~ 277 (796)
++|+|+||+|||+++..++.++..+.-+.. +..-++.++...... . ...+....+.+....+... .
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~ 80 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPS-KFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEK-N 80 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCcccc-cceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHc-C
Confidence 578899999999999999999988753321 112233444333222 0 0001111111112222222 5
Q ss_pred CCEEEEEcchhhhhhh
Q 003769 278 RGIVLYLGDLKWVAEF 293 (796)
Q Consensus 278 ~~~ILfIDElh~l~~~ 293 (796)
+.++|+||-++.+.+.
T Consensus 81 ~~~llilDglDE~~~~ 96 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQ 96 (166)
T ss_pred CceEEEEechHhcccc
Confidence 6899999999998874
No 329
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.17 E-value=0.0016 Score=74.43 Aligned_cols=137 Identities=16% Similarity=0.179 Sum_probs=85.2
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCC-
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD- 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~- 659 (796)
++|....+..+.+.+... .+...++++.|.+| +||+.+|+.|-..-.... ..|+.+|++... +......+.|.
T Consensus 141 lig~s~~~~~~~~~i~~~--~~~~~~vli~ge~g--~gk~~~a~~ih~~s~~~~-~~~i~~~c~~~~-~~~~~~~lfg~~ 214 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALV--APSEATVLIHGDSG--TGKELVARAIHASSARSE-KPLVTLNCAALN-ESLLESELFGHE 214 (441)
T ss_pred eEecCHHHHHHHHHHhhc--cCCCCeEEEEecCC--CCHHHHHHHHHHcCCCCC-CCeeeeeCCCCC-HHHHHHHhcCCC
Confidence 445555555554444322 33446677899999 999999999998887776 889999998552 22111111111
Q ss_pred CC-CCCCCc--hhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCC-ceecCCcEEEEeeCC
Q 003769 660 VE-LGCCSY--IERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADG-EIVPLKDSIIIFSCD 731 (796)
Q Consensus 660 ~~-~~~~~~--~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G-~~v~~~n~IiilTsn 731 (796)
.+ +.|... .|. +..--..+++|||||.. ++ .+|..|++.+++|.++.-.+ +.+. -|+-||.||+
T Consensus 215 ~~~~~~~~~~~~g~----~~~a~~gtl~ldei~~l--~~-~~q~~l~~~l~~~~~~~~~~~~~~~-~~~rii~~t~ 282 (441)
T PRK10365 215 KGAFTGADKRREGR----FVEADGGTLFLDEIGDI--SP-MMQVRLLRAIQEREVQRVGSNQTIS-VDVRLIAATH 282 (441)
T ss_pred CCCcCCCCcCCCCc----eeECCCCEEEEeccccC--CH-HHHHHHHHHHccCcEEeCCCCceee-eceEEEEeCC
Confidence 10 111100 111 12223568999999999 99 99999999999998764333 2222 2455676664
No 330
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.16 E-value=0.0018 Score=74.43 Aligned_cols=136 Identities=15% Similarity=0.195 Sum_probs=96.6
Q ss_pred hcCCCCCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccc
Q 003769 576 ERKAVVPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKK 655 (796)
Q Consensus 576 ~~~~~v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k 655 (796)
... ++|+..++..+-+.|.+. .......|+.|.+| +||.-+|++|=+.==-.. ..||.++|.... +..--+-
T Consensus 140 ~~~--liG~S~am~~l~~~i~kv--A~s~a~VLI~GESG--tGKElvAr~IH~~S~R~~-~PFVavNcaAip-~~l~ESE 211 (464)
T COG2204 140 GGE--LVGESPAMQQLRRLIAKV--APSDASVLITGESG--TGKELVARAIHQASPRAK-GPFIAVNCAAIP-ENLLESE 211 (464)
T ss_pred cCC--ceecCHHHHHHHHHHHHH--hCCCCCEEEECCCC--CcHHHHHHHHHhhCcccC-CCceeeecccCC-HHHHHHH
Confidence 456 899999999988888644 44556789999999 999999999988764444 789999998652 2211111
Q ss_pred cCCCCCCCCCCchhhHHHHHHhCC-------CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCc---eecCCcEE
Q 003769 656 RSRDVELGCCSYIERLGLALNENP-------HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGE---IVPLKDSI 725 (796)
Q Consensus 656 ~~~~~~~~~~~~~~~L~eavr~~P-------~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~---~v~~~n~I 725 (796)
+-| |. -|-+|.|..++. --.+|||||+.. .. ++|.-|++++++|.++-=.|+ +||.+
T Consensus 212 LFG------he-kGAFTGA~~~r~G~fE~A~GGTLfLDEI~~m--pl-~~Q~kLLRvLqe~~~~rvG~~~~i~vdvR--- 278 (464)
T COG2204 212 LFG------HE-KGAFTGAITRRIGRFEQANGGTLFLDEIGEM--PL-ELQVKLLRVLQEREFERVGGNKPIKVDVR--- 278 (464)
T ss_pred hhc------cc-ccCcCCcccccCcceeEcCCceEEeeccccC--CH-HHHHHHHHHHHcCeeEecCCCcccceeeE---
Confidence 111 10 123344443333 337899999999 99 999999999999999965553 34444
Q ss_pred EEeeCCC
Q 003769 726 IIFSCDS 732 (796)
Q Consensus 726 iilTsn~ 732 (796)
||.+||.
T Consensus 279 iIaaT~~ 285 (464)
T COG2204 279 IIAATNR 285 (464)
T ss_pred EEeecCc
Confidence 8888873
No 331
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0019 Score=71.73 Aligned_cols=108 Identities=16% Similarity=0.237 Sum_probs=71.9
Q ss_pred cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCC--chhhHHHHHHhC
Q 003769 601 KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCS--YIERLGLALNEN 678 (796)
Q Consensus 601 ~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~--~~~~L~eavr~~ 678 (796)
.+|.--+|+.||+| +|||-|||++|-.- |.. | |+.|... . +|| |.|-+ .+-.|.|--|.+
T Consensus 242 rrPWkgvLm~GPPG--TGKTlLAKAvATEc-~tT---F--FNVSsst---l-tSK------wRGeSEKlvRlLFemARfy 303 (491)
T KOG0738|consen 242 RRPWKGVLMVGPPG--TGKTLLAKAVATEC-GTT---F--FNVSSST---L-TSK------WRGESEKLVRLLFEMARFY 303 (491)
T ss_pred ccccceeeeeCCCC--CcHHHHHHHHHHhh-cCe---E--EEechhh---h-hhh------hccchHHHHHHHHHHHHHh
Confidence 68988899999999 99999999999876 332 4 4444221 1 233 33332 346889999999
Q ss_pred CCEEEEEcccccC-------CC---ChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCCC
Q 003769 679 PHRVFFMEDLDDH-------KV---DSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDSL 733 (796)
Q Consensus 679 P~~Vvl~deieka-------~~---~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~~ 733 (796)
--++|||||||-- +- .. .|.+=||+-|| +-|.+..-...++||.+.-|
T Consensus 304 APStIFiDEIDslcs~RG~s~EHEaSR-RvKsELLvQmD------G~~~t~e~~k~VmVLAATN~ 361 (491)
T KOG0738|consen 304 APSTIFIDEIDSLCSQRGGSSEHEASR-RVKSELLVQMD------GVQGTLENSKVVMVLAATNF 361 (491)
T ss_pred CCceeehhhHHHHHhcCCCccchhHHH-HHHHHHHHHhh------ccccccccceeEEEEeccCC
Confidence 9999999999831 00 44 67777887774 22223333456777754334
No 332
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.15 E-value=0.0013 Score=71.56 Aligned_cols=94 Identities=9% Similarity=0.051 Sum_probs=54.4
Q ss_pred ChHHHHHHHHHHhh-ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHH
Q 003769 192 DSDDVMSVLNALIN-KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSC 270 (796)
Q Consensus 192 r~~ei~~vi~~L~r-~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~ 270 (796)
+++.+..+...+.. +..+++|+||||+|||++++.++..+..... ...++.++.+.-.. ..-+.+.++++..
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~-----~~~~i~~~~~~~~~--~~~~~~~i~~~~~ 94 (319)
T PRK00440 22 QEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDW-----RENFLELNASDERG--IDVIRNKIKEFAR 94 (319)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc-----ccceEEeccccccc--hHHHHHHHHHHHh
Confidence 55666666655555 5567899999999999999999998753311 12345554332111 1112223333222
Q ss_pred HHHhccCCCEEEEEcchhhhhh
Q 003769 271 HVKSYMGRGIVLYLGDLKWVAE 292 (796)
Q Consensus 271 ~v~~~~~~~~ILfIDElh~l~~ 292 (796)
..-......-+++|||+|.+..
T Consensus 95 ~~~~~~~~~~vviiDe~~~l~~ 116 (319)
T PRK00440 95 TAPVGGAPFKIIFLDEADNLTS 116 (319)
T ss_pred cCCCCCCCceEEEEeCcccCCH
Confidence 1101001356999999998854
No 333
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.14 E-value=0.0025 Score=65.48 Aligned_cols=97 Identities=18% Similarity=0.273 Sum_probs=61.5
Q ss_pred eEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCC-CCccccccc-cccCCCCCCCCCCchhhHHHHHHhCCCEE
Q 003769 605 TWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSS-QSRQDDCRT-KKRSRDVELGCCSYIERLGLALNENPHRV 682 (796)
Q Consensus 605 ~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms-~~~~~~~~~-~k~~~~~~~~~~~~~~~L~eavr~~P~~V 682 (796)
|.++|.||+| .|||+++++|+..+-...+..++.+.-. ++. ..... .-.....+.....|.+.+..++|.+|. +
T Consensus 2 GlilI~GptG--SGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~-~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd-~ 77 (198)
T cd01131 2 GLVLVTGPTG--SGKSTTLAAMIDYINKNKTHHILTIEDPIEFV-HESKRSLINQREVGLDTLSFENALKAALRQDPD-V 77 (198)
T ss_pred cEEEEECCCC--CCHHHHHHHHHHHhhhcCCcEEEEEcCCcccc-ccCccceeeecccCCCccCHHHHHHHHhcCCcC-E
Confidence 7899999999 9999999999988853321345555433 221 11100 000011122223566788889999885 8
Q ss_pred EEEcccccCCCChHHHHHHHHHHHHcce
Q 003769 683 FFMEDLDDHKVDSCYCQKGLKQAIENGC 710 (796)
Q Consensus 683 vl~deieka~~~~~~v~~~l~q~~d~G~ 710 (796)
|++||+- ++ +....++++...|.
T Consensus 78 ii~gEir----d~-e~~~~~l~~a~~G~ 100 (198)
T cd01131 78 ILVGEMR----DL-ETIRLALTAAETGH 100 (198)
T ss_pred EEEcCCC----CH-HHHHHHHHHHHcCC
Confidence 9999994 45 66677778877664
No 334
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.13 E-value=0.0013 Score=68.86 Aligned_cols=66 Identities=11% Similarity=0.272 Sum_probs=55.5
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
.-||++|.|-=|+||+++|+++-..+... +.++|+++-..+.. |-.|++.++.. ...+|||+|
T Consensus 84 pANnVLLwGaRGtGKSSLVKA~~~e~~~~-------glrLVEV~k~dl~~---------Lp~l~~~Lr~~-~~kFIlFcD 146 (287)
T COG2607 84 PANNVLLWGARGTGKSSLVKALLNEYADE-------GLRLVEVDKEDLAT---------LPDLVELLRAR-PEKFILFCD 146 (287)
T ss_pred cccceEEecCCCCChHHHHHHHHHHHHhc-------CCeEEEEcHHHHhh---------HHHHHHHHhcC-CceEEEEec
Confidence 67999999999999999999999887643 56799998666554 67788888876 678999999
Q ss_pred chh
Q 003769 286 DLK 288 (796)
Q Consensus 286 Elh 288 (796)
|+-
T Consensus 147 DLS 149 (287)
T COG2607 147 DLS 149 (287)
T ss_pred CCC
Confidence 995
No 335
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.13 E-value=0.0043 Score=73.85 Aligned_cols=93 Identities=14% Similarity=0.120 Sum_probs=54.2
Q ss_pred HHHHHHHH-HHhh-ccCc-eEEEcCCcccHHHHHHHHHHHHHcCCCCC--------------CCCCceEEEeeccccccc
Q 003769 194 DDVMSVLN-ALIN-KKRN-TVIVGGNLAAIEGVIRGIIDQFERGQVPG--------------DLRYAQFISLPLFSFRNQ 256 (796)
Q Consensus 194 ~ei~~vi~-~L~r-~k~n-~vLvGepGvGKTaiv~~la~ri~~~~vp~--------------~L~~~~v~~l~~~~l~a~ 256 (796)
+++.+.+. .+.. +-.+ .+|.||+|+|||++++.+|..+...+-+. ......++.+|..+-.
T Consensus 22 ~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~~-- 99 (576)
T PRK14965 22 EHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGASNT-- 99 (576)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccCcc--
Confidence 34444333 3444 4344 47899999999999999999886322110 0112235555543211
Q ss_pred chHHHHHHHHHHHHHHHhcc--CCCEEEEEcchhhhhh
Q 003769 257 SKGEVEQKLVELSCHVKSYM--GRGIVLYLGDLKWVAE 292 (796)
Q Consensus 257 ~rge~E~rl~~l~~~v~~~~--~~~~ILfIDElh~l~~ 292 (796)
.. +.+++|++.++... +..-|++|||+|.+..
T Consensus 100 ~v----~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~ 133 (576)
T PRK14965 100 GV----DDIRELRENVKYLPSRSRYKIFIIDEVHMLST 133 (576)
T ss_pred CH----HHHHHHHHHHHhccccCCceEEEEEChhhCCH
Confidence 11 22566666665321 3346899999998864
No 336
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.13 E-value=0.00095 Score=71.44 Aligned_cols=92 Identities=15% Similarity=0.133 Sum_probs=58.1
Q ss_pred ChHHHHHHHHHHhh---ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeeccccc----------c---
Q 003769 192 DSDDVMSVLNALIN---KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFR----------N--- 255 (796)
Q Consensus 192 r~~ei~~vi~~L~r---~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~----------a--- 255 (796)
||.++.++.+.|.. ..+-+.|+|++|+|||++|..+++..... ... + .++.++++.-. .
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~---~~f-~-~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIK---NRF-D-GVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHC---CCC-T-EEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccc---ccc-c-ccccccccccccccccccccccccc
Confidence 79999999999987 34445578999999999999999873311 122 1 23334432110 0
Q ss_pred -c-----chHHHHHHHHHHHHHHHhccCCCEEEEEcchhhhh
Q 003769 256 -Q-----SKGEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVA 291 (796)
Q Consensus 256 -~-----~rge~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~ 291 (796)
. ...+.++....|.+.++ +++++|++|++....
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~---~~~~LlVlDdv~~~~ 114 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLK---DKRCLLVLDDVWDEE 114 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHC---CTSEEEEEEEE-SHH
T ss_pred ccccccccccccccccccchhhhc---cccceeeeeeecccc
Confidence 1 12234555555666555 458999999986544
No 337
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.11 E-value=0.0037 Score=76.65 Aligned_cols=148 Identities=13% Similarity=0.143 Sum_probs=95.7
Q ss_pred HHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHhhc-----------------cCCCeEEEEecCCCCCchHHHHHHHHHH
Q 003769 566 ENLKVLSDALERKAVVPWQKEIMPEIARTILECRS-----------------KKEQTWLLFLGADDHNHGKEKIAREIAK 628 (796)
Q Consensus 566 e~L~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~rs-----------------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~ 628 (796)
.-+..|.+.+.-. |.|++++..+|+=++.-.-. -|...++|+.|.+| +||+.+|+.+++
T Consensus 439 ~i~~~L~~SiaP~--I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPG--TGKSqLAr~Ih~ 514 (915)
T PTZ00111 439 MIYRILLDSFAPS--IKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPG--TAKSQLLHYTHL 514 (915)
T ss_pred HHHHHHHHHhCCe--EECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCC--ccHHHHHHHHHH
Confidence 4566788889999 99999999888766644321 13455999999999 999999999998
Q ss_pred HHc----CCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHH
Q 003769 629 VVF----GSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQ 704 (796)
Q Consensus 629 ~~f----g~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q 704 (796)
.-. .+- ..++.+++.... . .+.. ..|. +. .=..++-.----+++||||++. .+ ..+..|++
T Consensus 515 lspR~~ytsG-~~~s~vgLTa~~-~----~~d~----~tG~-~~-le~GaLvlAdgGtL~IDEidkm--s~-~~Q~aLlE 579 (915)
T PTZ00111 515 LSPRSIYTSG-KSSSSVGLTASI-K----FNES----DNGR-AM-IQPGAVVLANGGVCCIDELDKC--HN-ESRLSLYE 579 (915)
T ss_pred hCCccccCCC-CCCccccccchh-h----hccc----ccCc-cc-ccCCcEEEcCCCeEEecchhhC--CH-HHHHHHHH
Confidence 532 222 234444443220 0 0000 0000 00 0000112222358999999999 99 99999999
Q ss_pred HHHcceEec-CCCceecC-CcEEEEeeCCC
Q 003769 705 AIENGCIAL-ADGEIVPL-KDSIIIFSCDS 732 (796)
Q Consensus 705 ~~d~G~l~d-~~G~~v~~-~n~IiilTsn~ 732 (796)
+|+++.++= ..|-...+ .+|-||.|+|.
T Consensus 580 aMEqqtIsI~KaGi~~tL~ar~rVIAAaNP 609 (915)
T PTZ00111 580 VMEQQTVTIAKAGIVATLKAETAILASCNP 609 (915)
T ss_pred HHhCCEEEEecCCcceecCCCeEEEEEcCC
Confidence 999999973 34644444 47778888885
No 338
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.11 E-value=0.0012 Score=73.28 Aligned_cols=104 Identities=17% Similarity=0.227 Sum_probs=65.7
Q ss_pred CeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCEEE
Q 003769 604 QTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHRVF 683 (796)
Q Consensus 604 ~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vv 683 (796)
..+++|.||+| +|||.||.++|..+.... ...+.+++.+. .......+ +..........+.+.+ ..|+
T Consensus 183 ~~~Lll~G~~G--tGKThLa~aIa~~l~~~g-~~V~y~t~~~l-~~~l~~~~------~~~~~~~~~~~~~l~~--~DLL 250 (329)
T PRK06835 183 NENLLFYGNTG--TGKTFLSNCIAKELLDRG-KSVIYRTADEL-IEILREIR------FNNDKELEEVYDLLIN--CDLL 250 (329)
T ss_pred CCcEEEECCCC--CcHHHHHHHHHHHHHHCC-CeEEEEEHHHH-HHHHHHHH------hccchhHHHHHHHhcc--CCEE
Confidence 37899999999 999999999999887665 56666766543 11110000 0001111111333433 3799
Q ss_pred EEccc--ccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 684 FMEDL--DDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 684 l~dei--eka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
+|||+ |.. ++ .....|.++|+.-... |+. +|+|||.
T Consensus 251 IIDDlG~e~~--t~-~~~~~Lf~iin~R~~~---~k~-------tIiTSNl 288 (329)
T PRK06835 251 IIDDLGTEKI--TE-FSKSELFNLINKRLLR---QKK-------MIISTNL 288 (329)
T ss_pred EEeccCCCCC--CH-HHHHHHHHHHHHHHHC---CCC-------EEEECCC
Confidence 99999 555 77 7788888888764332 211 7788884
No 339
>PRK12377 putative replication protein; Provisional
Probab=97.08 E-value=0.0017 Score=69.28 Aligned_cols=90 Identities=14% Similarity=0.165 Sum_probs=58.7
Q ss_pred CeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCEEE
Q 003769 604 QTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHRVF 683 (796)
Q Consensus 604 ~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vv 683 (796)
..+|+|.||+| +|||.||.+||..+-... ..++.+.+.+. .... + ..|........+.+.+ .-..|+
T Consensus 101 ~~~l~l~G~~G--tGKThLa~AIa~~l~~~g-~~v~~i~~~~l-~~~l---~----~~~~~~~~~~~~l~~l--~~~dLL 167 (248)
T PRK12377 101 CTNFVFSGKPG--TGKNHLAAAIGNRLLAKG-RSVIVVTVPDV-MSRL---H----ESYDNGQSGEKFLQEL--CKVDLL 167 (248)
T ss_pred CCeEEEECCCC--CCHHHHHHHHHHHHHHcC-CCeEEEEHHHH-HHHH---H----HHHhccchHHHHHHHh--cCCCEE
Confidence 46999999999 999999999999887544 45566666432 1111 1 0011111112333333 346799
Q ss_pred EEccc--ccCCCChHHHHHHHHHHHHcc
Q 003769 684 FMEDL--DDHKVDSCYCQKGLKQAIENG 709 (796)
Q Consensus 684 l~dei--eka~~~~~~v~~~l~q~~d~G 709 (796)
+|||| +.. .. ..+..|.++++.-
T Consensus 168 iIDDlg~~~~--s~-~~~~~l~~ii~~R 192 (248)
T PRK12377 168 VLDEIGIQRE--TK-NEQVVLNQIIDRR 192 (248)
T ss_pred EEcCCCCCCC--CH-HHHHHHHHHHHHH
Confidence 99999 555 77 7888999999753
No 340
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.08 E-value=0.0051 Score=72.20 Aligned_cols=94 Identities=17% Similarity=0.141 Sum_probs=53.0
Q ss_pred HHHHHHHH-HHhh-ccCce-EEEcCCcccHHHHHHHHHHHHHcCCCCC--------------CCCCceEEEeeccccccc
Q 003769 194 DDVMSVLN-ALIN-KKRNT-VIVGGNLAAIEGVIRGIIDQFERGQVPG--------------DLRYAQFISLPLFSFRNQ 256 (796)
Q Consensus 194 ~ei~~vi~-~L~r-~k~n~-vLvGepGvGKTaiv~~la~ri~~~~vp~--------------~L~~~~v~~l~~~~l~a~ 256 (796)
+.+...+. .+.. +-.+. +|+||+|+|||++++.+|+.+...+-+. ...+..++.++.++- .
T Consensus 20 e~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~--~ 97 (535)
T PRK08451 20 ESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASN--R 97 (535)
T ss_pred HHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccc--c
Confidence 44433333 3333 33444 7899999999999999999986432111 112345666653321 1
Q ss_pred chHHHHHHHHHHHHHHHhcc--CCCEEEEEcchhhhhhh
Q 003769 257 SKGEVEQKLVELSCHVKSYM--GRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 257 ~rge~E~rl~~l~~~v~~~~--~~~~ILfIDElh~l~~~ 293 (796)
...+ ++++++.+.... +..-|++|||+|.+...
T Consensus 98 gId~----IRelie~~~~~P~~~~~KVvIIDEad~Lt~~ 132 (535)
T PRK08451 98 GIDD----IRELIEQTKYKPSMARFKIFIIDEVHMLTKE 132 (535)
T ss_pred CHHH----HHHHHHHHhhCcccCCeEEEEEECcccCCHH
Confidence 1222 344443332110 34569999999988653
No 341
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.07 E-value=0.0032 Score=73.87 Aligned_cols=56 Identities=18% Similarity=0.132 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHhh---ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeeccccc
Q 003769 192 DSDDVMSVLNALIN---KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFR 254 (796)
Q Consensus 192 r~~ei~~vi~~L~r---~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~ 254 (796)
+...++++.+.+.+ ...+++|.||+|||||.+++.|-..-.+ ++..|+.+|.+.+-
T Consensus 192 ~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r-------~~~p~v~v~c~~~~ 250 (509)
T PRK05022 192 QSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPR-------ADKPLVYLNCAALP 250 (509)
T ss_pred cCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCc-------CCCCeEEEEcccCC
Confidence 77788888887776 6677778899999999999999875322 35689999987653
No 342
>PRK09087 hypothetical protein; Validated
Probab=97.05 E-value=0.0022 Score=67.38 Aligned_cols=113 Identities=10% Similarity=-0.002 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHhhccCc-eEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHH
Q 003769 193 SDDVMSVLNALINKKRN-TVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCH 271 (796)
Q Consensus 193 ~~ei~~vi~~L~r~k~n-~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~ 271 (796)
+..+..+++.+....++ ++|+|++|+|||+++++++... +.. .++...+. .+++..
T Consensus 29 N~~a~~~l~~~~~~~~~~l~l~G~~GsGKThLl~~~~~~~----------~~~--~i~~~~~~-----------~~~~~~ 85 (226)
T PRK09087 29 NRAAVSLVDHWPNWPSPVVVLAGPVGSGKTHLASIWREKS----------DAL--LIHPNEIG-----------SDAANA 85 (226)
T ss_pred hHHHHHHHHhcccCCCCeEEEECCCCCCHHHHHHHHHHhc----------CCE--EecHHHcc-----------hHHHHh
Confidence 44444443333321233 6899999999999999888642 223 33322222 122222
Q ss_pred HHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcC
Q 003769 272 VKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGH 351 (796)
Q Consensus 272 v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~d 351 (796)
+.. -+|+|||++.+... +. . .... +..+. ++|...+|++++...|... ..
T Consensus 86 ~~~-----~~l~iDDi~~~~~~--------~~--------~--lf~l-~n~~~----~~g~~ilits~~~p~~~~~--~~ 135 (226)
T PRK09087 86 AAE-----GPVLIEDIDAGGFD--------ET--------G--LFHL-INSVR----QAGTSLLMTSRLWPSSWNV--KL 135 (226)
T ss_pred hhc-----CeEEEECCCCCCCC--------HH--------H--HHHH-HHHHH----hCCCeEEEECCCChHHhcc--cc
Confidence 221 37888999965211 11 1 1111 22344 3788999999887777643 46
Q ss_pred ccccccc
Q 003769 352 PSLENMW 358 (796)
Q Consensus 352 paLerrf 358 (796)
|.|..|+
T Consensus 136 ~dL~SRl 142 (226)
T PRK09087 136 PDLKSRL 142 (226)
T ss_pred ccHHHHH
Confidence 8888886
No 343
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.04 E-value=0.0073 Score=71.64 Aligned_cols=137 Identities=8% Similarity=0.007 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHhh-ccC-ceEEEcCCcccHHHHHHHHHHHHHcCCC----C----------CCCCCceEEEeeccccccc
Q 003769 193 SDDVMSVLNALIN-KKR-NTVIVGGNLAAIEGVIRGIIDQFERGQV----P----------GDLRYAQFISLPLFSFRNQ 256 (796)
Q Consensus 193 ~~ei~~vi~~L~r-~k~-n~vLvGepGvGKTaiv~~la~ri~~~~v----p----------~~L~~~~v~~l~~~~l~a~ 256 (796)
+.-++.+...+.. +.. ..++.||+|+|||++++.+|+.+....- | .......++.+|.++-.
T Consensus 22 e~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas~i-- 99 (605)
T PRK05896 22 ELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAASNN-- 99 (605)
T ss_pred HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEecccccc--
Confidence 3334444455544 334 4668899999999999999998853211 1 00112356666643311
Q ss_pred chHHHHHHHHHHHHHHHhcc--CCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEE
Q 003769 257 SKGEVEQKLVELSCHVKSYM--GRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVW 334 (796)
Q Consensus 257 ~rge~E~rl~~l~~~v~~~~--~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~ 334 (796)
..++ ++++++.+.... ++.-|++|||+|.+... +.|. |...+.. -.+...
T Consensus 100 gVd~----IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~---------------------A~Na-LLKtLEE--Pp~~tv 151 (605)
T PRK05896 100 GVDE----IRNIIDNINYLPTTFKYKVYIIDEAHMLSTS---------------------AWNA-LLKTLEE--PPKHVV 151 (605)
T ss_pred CHHH----HHHHHHHHHhchhhCCcEEEEEechHhCCHH---------------------HHHH-HHHHHHh--CCCcEE
Confidence 2233 455555554321 33458999999988532 2233 4444421 146677
Q ss_pred EEEecChHHHHHhhhcCccccccccceecccC
Q 003769 335 IMGIASFQTYTRCKAGHPSLENMWKLHPFTIP 366 (796)
Q Consensus 335 ~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp 366 (796)
+|.+||. +.+ ..|++.+|. |.+..+
T Consensus 152 fIL~Tt~--~~K---Ll~TI~SRc--q~ieF~ 176 (605)
T PRK05896 152 FIFATTE--FQK---IPLTIISRC--QRYNFK 176 (605)
T ss_pred EEEECCC--hHh---hhHHHHhhh--hhcccC
Confidence 7777763 222 346777774 445443
No 344
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.04 E-value=0.0014 Score=78.27 Aligned_cols=52 Identities=23% Similarity=0.310 Sum_probs=44.3
Q ss_pred HHHhhcCCCCCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCC
Q 003769 572 SDALERKAVVPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGS 633 (796)
Q Consensus 572 ~~~L~~~~~v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~ 633 (796)
.+.|-.. |+||++++..+..++...+ .++|.||+| +|||.+|++||+.+...
T Consensus 13 ~~~~~~~--viG~~~a~~~l~~a~~~~~------~~ll~G~pG--~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 13 PERLIDQ--VIGQEEAVEIIKKAAKQKR------NVLLIGEPG--VGKSMLAKAMAELLPDE 64 (608)
T ss_pred chhhHhh--ccCHHHHHHHHHHHHHcCC------CEEEECCCC--CCHHHHHHHHHHHcCch
Confidence 4567788 9999999998887776432 778999999 99999999999999765
No 345
>PRK08181 transposase; Validated
Probab=97.04 E-value=0.0015 Score=70.54 Aligned_cols=102 Identities=15% Similarity=0.134 Sum_probs=63.9
Q ss_pred eEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCEEEE
Q 003769 605 TWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHRVFF 684 (796)
Q Consensus 605 ~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vvl 684 (796)
..++|+||+| +|||.||.++|..+-... ...+.+.+.+. ....... .. .+....+.+.+. -+.|++
T Consensus 107 ~nlll~Gp~G--tGKTHLa~Aia~~a~~~g-~~v~f~~~~~L-~~~l~~a-------~~-~~~~~~~l~~l~--~~dLLI 172 (269)
T PRK08181 107 ANLLLFGPPG--GGKSHLAAAIGLALIENG-WRVLFTRTTDL-VQKLQVA-------RR-ELQLESAIAKLD--KFDLLI 172 (269)
T ss_pred ceEEEEecCC--CcHHHHHHHHHHHHHHcC-CceeeeeHHHH-HHHHHHH-------Hh-CCcHHHHHHHHh--cCCEEE
Confidence 4699999999 999999999998776443 44555555432 1111100 00 011123333333 357999
Q ss_pred EcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 685 MEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 685 ~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
|||+.....+. .....|.++++ .|.. ++ =+|+|||.
T Consensus 173 IDDlg~~~~~~-~~~~~Lf~lin-~R~~--~~--------s~IiTSN~ 208 (269)
T PRK08181 173 LDDLAYVTKDQ-AETSVLFELIS-ARYE--RR--------SILITANQ 208 (269)
T ss_pred EeccccccCCH-HHHHHHHHHHH-HHHh--CC--------CEEEEcCC
Confidence 99998775577 77789999997 3322 11 16778884
No 346
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.03 E-value=0.0046 Score=75.17 Aligned_cols=145 Identities=12% Similarity=0.121 Sum_probs=89.7
Q ss_pred hhcCCCCCCcchHHHHHHHHHHHhhc-cCCCeEEEEecCCCCCchHHHHHHHHHHHHcC-----CC-CCceEEecCCCCc
Q 003769 575 LERKAVVPWQKEIMPEIARTILECRS-KKEQTWLLFLGADDHNHGKEKIAREIAKVVFG-----SH-SNNFTNLSSSQSR 647 (796)
Q Consensus 575 L~~~~~v~gQ~~av~~ia~~i~~~rs-~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg-----~~-~~~~i~~dms~~~ 647 (796)
.-++ +|+-++=+..|+..|.-+-. ..|...+++.||+| +|||.+++.+.+.|=. .. .-.++.|++....
T Consensus 753 VPD~--LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PG--TGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Ls 828 (1164)
T PTZ00112 753 VPKY--LPCREKEIKEVHGFLESGIKQSGSNQILYISGMPG--TGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVV 828 (1164)
T ss_pred CCCc--CCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCC--CCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccC
Confidence 3456 78999999999999987755 45556778999999 9999999999877621 00 0135778875321
Q ss_pred cccc--c-c-cccCCCCCCCCC---CchhhHHHHHH--hCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCce
Q 003769 648 QDDC--R-T-KKRSRDVELGCC---SYIERLGLALN--ENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEI 718 (796)
Q Consensus 648 ~~~~--~-~-~k~~~~~~~~~~---~~~~~L~eavr--~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~ 718 (796)
.... . + .++.+.....|. .+...|.+.+. ..+..||+|||||.. -. .-+.+|++.|+--... +
T Consensus 829 tp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L--~k-K~QDVLYnLFR~~~~s---~-- 900 (1164)
T PTZ00112 829 HPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYL--IT-KTQKVLFTLFDWPTKI---N-- 900 (1164)
T ss_pred CHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhh--Cc-cHHHHHHHHHHHhhcc---C--
Confidence 1110 0 0 011111111222 23345555552 245679999999988 65 5677888888753221 2
Q ss_pred ecCCcEEEEeeCCCCC
Q 003769 719 VPLKDSIIIFSCDSLD 734 (796)
Q Consensus 719 v~~~n~IiilTsn~~~ 734 (796)
...+||..||.++
T Consensus 901 ---SKLiLIGISNdlD 913 (1164)
T PTZ00112 901 ---SKLVLIAISNTMD 913 (1164)
T ss_pred ---CeEEEEEecCchh
Confidence 2467888888643
No 347
>PRK05642 DNA replication initiation factor; Validated
Probab=97.03 E-value=0.0025 Score=67.17 Aligned_cols=93 Identities=12% Similarity=0.120 Sum_probs=59.1
Q ss_pred eEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCEEEE
Q 003769 605 TWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHRVFF 684 (796)
Q Consensus 605 ~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vvl 684 (796)
..+++.||+| +|||.|+.+++..+-... ...+.+++.+.. . +...+-+.++. +.+++
T Consensus 46 ~~l~l~G~~G--~GKTHLl~a~~~~~~~~~-~~v~y~~~~~~~-~-----------------~~~~~~~~~~~--~d~Li 102 (234)
T PRK05642 46 SLIYLWGKDG--VGRSHLLQAACLRFEQRG-EPAVYLPLAELL-D-----------------RGPELLDNLEQ--YELVC 102 (234)
T ss_pred CeEEEECCCC--CCHHHHHHHHHHHHHhCC-CcEEEeeHHHHH-h-----------------hhHHHHHhhhh--CCEEE
Confidence 4688999999 999999999998776443 455666654321 0 01234444553 46899
Q ss_pred EcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCC
Q 003769 685 MEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 685 ~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn 731 (796)
+|||+.-.-.+ ..+..|+.+++. +.+ + +..+|+||+
T Consensus 103 iDDi~~~~~~~-~~~~~Lf~l~n~--~~~-~-------g~~ilits~ 138 (234)
T PRK05642 103 LDDLDVIAGKA-DWEEALFHLFNR--LRD-S-------GRRLLLAAS 138 (234)
T ss_pred EechhhhcCCh-HHHHHHHHHHHH--HHh-c-------CCEEEEeCC
Confidence 99998542245 556667777754 111 1 234788886
No 348
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.02 E-value=0.0076 Score=68.56 Aligned_cols=40 Identities=5% Similarity=0.064 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhh--ccCc-eEEEcCCcccHHHHHHHHHHHHHc
Q 003769 194 DDVMSVLNALIN--KKRN-TVIVGGNLAAIEGVIRGIIDQFER 233 (796)
Q Consensus 194 ~ei~~vi~~L~r--~k~n-~vLvGepGvGKTaiv~~la~ri~~ 233 (796)
+.+...+..+.+ +-.+ .+|.||||+|||++++.+|+.+..
T Consensus 22 ~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 22 EHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred HHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444444444433 4444 678899999999999999998854
No 349
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.01 E-value=0.0023 Score=72.29 Aligned_cols=137 Identities=15% Similarity=0.144 Sum_probs=90.6
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcC-CCCCceEEecCCCCccccccccccCCC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFG-SHSNNFTNLSSSQSRQDDCRTKKRSRD 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg-~~~~~~i~~dms~~~~~~~~~~k~~~~ 659 (796)
++|.......+-+.|.+ -..-.-..|+.|+|| +||+-+|+.|...-=. .. ..||+|+++.|+ +...-+.+-|.
T Consensus 80 LIG~~~~~~~~~eqik~--~ap~~~~vLi~GetG--tGKel~A~~iH~~s~r~~~-~PFI~~NCa~~~-en~~~~eLFG~ 153 (403)
T COG1221 80 LIGESPSLQELREQIKA--YAPSGLPVLIIGETG--TGKELFARLIHALSARRAE-APFIAFNCAAYS-ENLQEAELFGH 153 (403)
T ss_pred hhccCHHHHHHHHHHHh--hCCCCCcEEEecCCC--ccHHHHHHHHHHhhhcccC-CCEEEEEHHHhC-cCHHHHHHhcc
Confidence 78888888877777765 333445788999999 9999999999933322 24 689999999884 32222222221
Q ss_pred --CCCCCCCch-hhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEec---CCCceecCCcEEEEeeCCC
Q 003769 660 --VELGCCSYI-ERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIAL---ADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 660 --~~~~~~~~~-~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d---~~G~~v~~~n~IiilTsn~ 732 (796)
-.|.|..+. .-+.|... --.+|||||-.. -+ ..|..|++++|+|.++- .+.+.+|++ +|..++.
T Consensus 154 ~kGaftGa~~~k~Glfe~A~---GGtLfLDEI~~L--P~-~~Q~kLl~~le~g~~~rvG~~~~~~~dVR---li~AT~~ 223 (403)
T COG1221 154 EKGAFTGAQGGKAGLFEQAN---GGTLFLDEIHRL--PP-EGQEKLLRVLEEGEYRRVGGSQPRPVDVR---LICATTE 223 (403)
T ss_pred ccceeecccCCcCchheecC---CCEEehhhhhhC--CH-hHHHHHHHHHHcCceEecCCCCCcCCCce---eeecccc
Confidence 012232111 01111111 236899999999 99 99999999999999984 334555555 7776664
No 350
>PRK08727 hypothetical protein; Validated
Probab=96.97 E-value=0.0042 Score=65.44 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=52.8
Q ss_pred CCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHh-CCCE
Q 003769 603 EQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNE-NPHR 681 (796)
Q Consensus 603 ~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~-~P~~ 681 (796)
..-|++|.||+| +|||.|+.+++..+.... ...+.+.+.+.. ..+.+.+.. .-+.
T Consensus 40 ~~~~l~l~G~~G--~GKThL~~a~~~~~~~~~-~~~~y~~~~~~~---------------------~~~~~~~~~l~~~d 95 (233)
T PRK08727 40 SSDWLYLSGPAG--TGKTHLALALCAAAEQAG-RSSAYLPLQAAA---------------------GRLRDALEALEGRS 95 (233)
T ss_pred CCCeEEEECCCC--CCHHHHHHHHHHHHHHcC-CcEEEEeHHHhh---------------------hhHHHHHHHHhcCC
Confidence 346899999999 999999999998876543 344455543220 112222222 3456
Q ss_pred EEEEcccccCCCChHHHHHHHHHHHHcc
Q 003769 682 VFFMEDLDDHKVDSCYCQKGLKQAIENG 709 (796)
Q Consensus 682 Vvl~deieka~~~~~~v~~~l~q~~d~G 709 (796)
||+||||+....++ .-+..+++.++..
T Consensus 96 lLiIDDi~~l~~~~-~~~~~lf~l~n~~ 122 (233)
T PRK08727 96 LVALDGLESIAGQR-EDEVALFDFHNRA 122 (233)
T ss_pred EEEEeCcccccCCh-HHHHHHHHHHHHH
Confidence 99999999763345 4455666666554
No 351
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.96 E-value=0.0027 Score=75.99 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=20.6
Q ss_pred eEEEcCCcccHHHHHHHHHHHHH
Q 003769 210 TVIVGGNLAAIEGVIRGIIDQFE 232 (796)
Q Consensus 210 ~vLvGepGvGKTaiv~~la~ri~ 232 (796)
++|+||||+|||++++.+|..+.
T Consensus 113 llL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 113 LLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 78899999999999999998653
No 352
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.95 E-value=0.0083 Score=71.16 Aligned_cols=125 Identities=10% Similarity=0.035 Sum_probs=68.3
Q ss_pred HHHHHhh-ccCc-eEEEcCCcccHHHHHHHHHHHHHcCCCCC--------------CCCCceEEEeecccccccchHHHH
Q 003769 199 VLNALIN-KKRN-TVIVGGNLAAIEGVIRGIIDQFERGQVPG--------------DLRYAQFISLPLFSFRNQSKGEVE 262 (796)
Q Consensus 199 vi~~L~r-~k~n-~vLvGepGvGKTaiv~~la~ri~~~~vp~--------------~L~~~~v~~l~~~~l~a~~rge~E 262 (796)
+...+.+ +-.+ .+|.||||+|||++++.+|+.+....-+. ......++.++..+ .....+
T Consensus 28 L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas--~~~vdd-- 103 (563)
T PRK06647 28 LKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGAS--NTSVQD-- 103 (563)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcc--cCCHHH--
Confidence 3333433 3334 57889999999999999999886321111 11123455555321 011122
Q ss_pred HHHHHHHHHHHhcc--CCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecC
Q 003769 263 QKLVELSCHVKSYM--GRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIAS 340 (796)
Q Consensus 263 ~rl~~l~~~v~~~~--~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT 340 (796)
++++++.+.... ++.-|++|||+|.+... +.|. |...+.. -.+...+|.+||
T Consensus 104 --Ir~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~---------------------a~na-LLK~LEe--pp~~~vfI~~tt 157 (563)
T PRK06647 104 --VRQIKEEIMFPPASSRYRVYIIDEVHMLSNS---------------------AFNA-LLKTIEE--PPPYIVFIFATT 157 (563)
T ss_pred --HHHHHHHHHhchhcCCCEEEEEEChhhcCHH---------------------HHHH-HHHhhcc--CCCCEEEEEecC
Confidence 344444444311 45679999999988543 2333 3223311 146788888776
Q ss_pred hHHHHHhhhcCccccccc
Q 003769 341 FQTYTRCKAGHPSLENMW 358 (796)
Q Consensus 341 ~~ey~k~~~~dpaLerrf 358 (796)
.- .+ ..++|..|.
T Consensus 158 e~--~k---L~~tI~SRc 170 (563)
T PRK06647 158 EV--HK---LPATIKSRC 170 (563)
T ss_pred Ch--HH---hHHHHHHhc
Confidence 42 33 236677764
No 353
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=96.95 E-value=0.0019 Score=69.04 Aligned_cols=107 Identities=13% Similarity=0.058 Sum_probs=70.3
Q ss_pred eEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCC------ccccccccccCCCCCC--CCCCchhhHHHHHH
Q 003769 605 TWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQS------RQDDCRTKKRSRDVEL--GCCSYIERLGLALN 676 (796)
Q Consensus 605 ~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~------~~~~~~~~k~~~~~~~--~~~~~~~~L~eavr 676 (796)
-.+||.||.| .||..+|.++|+.++... ..- .+... ....|.-..... |.. .+-+.+..+.+.+.
T Consensus 8 HA~Lf~G~~G--~G~~~lA~~~A~~llC~~-~~~---~Cg~C~sC~~i~~~~HPDl~~i~-p~~~~I~id~ir~l~~~l~ 80 (261)
T PRK05818 8 HPLLLIERKG--SFLKPFLYEYLTSIVCTK-ANG---FCKTCESCLKILNGKYNDFYLIF-DQKNPIKKEDALSIINKLN 80 (261)
T ss_pred cceeeeCCCC--CcHHHHHHHHHHHHcCCC-CCC---CCCCCHHHHHHhcCCCCCEEEec-CCcccCCHHHHHHHHHHHc
Confidence 4567999999 999999999999999875 321 11110 011221111110 100 11122235555554
Q ss_pred h-----CCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 677 E-----NPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 677 ~-----~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
. .+|+|++++++|+. +. ...|.||..+|+ +-.+++|||+|+.
T Consensus 81 ~~s~e~~~~KV~II~~ae~m--~~-~AaNaLLK~LEE-----------Pp~~t~fiLit~~ 127 (261)
T PRK05818 81 RPSVESNGKKIYIIYGIEKL--NK-QSANSLLKLIEE-----------PPKNTYGIFTTRN 127 (261)
T ss_pred cCchhcCCCEEEEeccHhhh--CH-HHHHHHHHhhcC-----------CCCCeEEEEEECC
Confidence 3 35899999999999 99 999999999975 3589999998864
No 354
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.93 E-value=0.01 Score=70.91 Aligned_cols=93 Identities=14% Similarity=0.133 Sum_probs=52.7
Q ss_pred HHHHH-HHHHHhh-ccCc-eEEEcCCcccHHHHHHHHHHHHHcCCC-CC--------------CCCCceEEEeecccccc
Q 003769 194 DDVMS-VLNALIN-KKRN-TVIVGGNLAAIEGVIRGIIDQFERGQV-PG--------------DLRYAQFISLPLFSFRN 255 (796)
Q Consensus 194 ~ei~~-vi~~L~r-~k~n-~vLvGepGvGKTaiv~~la~ri~~~~v-p~--------------~L~~~~v~~l~~~~l~a 255 (796)
+.+.. +...+.+ +..+ .||+||||+|||++++.+|+.+....- +. .-.+..++.++.+...
T Consensus 22 ~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~- 100 (585)
T PRK14950 22 EHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHT- 100 (585)
T ss_pred HHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccC-
Confidence 34443 3344444 3334 478999999999999999998752110 00 0012345555543211
Q ss_pred cchHHHHHHHHHHHHHHHhcc--CCCEEEEEcchhhhhh
Q 003769 256 QSKGEVEQKLVELSCHVKSYM--GRGIVLYLGDLKWVAE 292 (796)
Q Consensus 256 ~~rge~E~rl~~l~~~v~~~~--~~~~ILfIDElh~l~~ 292 (796)
...+ ++++++.+.... +..-|+||||+|.|..
T Consensus 101 -~vd~----ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~ 134 (585)
T PRK14950 101 -SVDD----AREIIERVQFRPALARYKVYIIDEVHMLST 134 (585)
T ss_pred -CHHH----HHHHHHHHhhCcccCCeEEEEEeChHhCCH
Confidence 1222 455555554321 3457999999998754
No 355
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.92 E-value=0.012 Score=67.99 Aligned_cols=136 Identities=10% Similarity=0.003 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhh-c-cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCC---------------CCCceEEEeeccccccc
Q 003769 194 DDVMSVLNALIN-K-KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGD---------------LRYAQFISLPLFSFRNQ 256 (796)
Q Consensus 194 ~ei~~vi~~L~r-~-k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~---------------L~~~~v~~l~~~~l~a~ 256 (796)
.-+..+...+.+ + +...+|+||||+|||++++.+|+.+....-.+. .....++.++...-.
T Consensus 24 ~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~~~-- 101 (451)
T PRK06305 24 AVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGASHR-- 101 (451)
T ss_pred HHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeeccccC--
Confidence 334444444544 3 345678999999999999999998864210000 011234445422111
Q ss_pred chHHHHHHHHHHHHHHHhc--cCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEE
Q 003769 257 SKGEVEQKLVELSCHVKSY--MGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVW 334 (796)
Q Consensus 257 ~rge~E~rl~~l~~~v~~~--~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~ 334 (796)
...+ ++++.+.+... .+..-|+||||+|.+... +.|. |...+.. -.+...
T Consensus 102 gid~----ir~i~~~l~~~~~~~~~kvvIIdead~lt~~---------------------~~n~-LLk~lEe--p~~~~~ 153 (451)
T PRK06305 102 GIED----IRQINETVLFTPSKSRYKIYIIDEVHMLTKE---------------------AFNS-LLKTLEE--PPQHVK 153 (451)
T ss_pred CHHH----HHHHHHHHHhhhhcCCCEEEEEecHHhhCHH---------------------HHHH-HHHHhhc--CCCCce
Confidence 1122 33333333311 045679999999988653 2233 3334321 146777
Q ss_pred EEEecChHHHHHhhhcCccccccccceecccC
Q 003769 335 IMGIASFQTYTRCKAGHPSLENMWKLHPFTIP 366 (796)
Q Consensus 335 ~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp 366 (796)
+|.+|+.. . ..-+++.+|. +.|.++
T Consensus 154 ~Il~t~~~--~---kl~~tI~sRc--~~v~f~ 178 (451)
T PRK06305 154 FFLATTEI--H---KIPGTILSRC--QKMHLK 178 (451)
T ss_pred EEEEeCCh--H---hcchHHHHhc--eEEeCC
Confidence 77777532 2 2446777775 344443
No 356
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.92 E-value=0.002 Score=71.58 Aligned_cols=39 Identities=8% Similarity=0.213 Sum_probs=28.7
Q ss_pred hHHHHHHHH-HHhh-ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 193 SDDVMSVLN-ALIN-KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 193 ~~ei~~vi~-~L~r-~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
.+++.+.+. .+.- ...+++|.|+||+|||+++++++.-+
T Consensus 13 q~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 13 QEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 445444333 3332 45789999999999999999999865
No 357
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=96.92 E-value=0.0022 Score=74.93 Aligned_cols=39 Identities=8% Similarity=0.020 Sum_probs=30.1
Q ss_pred ChHHHHHHHHHHhhccCceEEEcCCcccHHHHHHHHHHH
Q 003769 192 DSDDVMSVLNALINKKRNTVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 192 r~~ei~~vi~~L~r~k~n~vLvGepGvGKTaiv~~la~r 230 (796)
..+.+.+-+++-.....|++|+||||+|||++++.++.-
T Consensus 196 Gq~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~l 234 (499)
T TIGR00368 196 GQQHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGI 234 (499)
T ss_pred CcHHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcc
Confidence 455555655555546789999999999999999998763
No 358
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=96.89 E-value=0.0033 Score=75.72 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHhh--ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 193 SDDVMSVLNALIN--KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 193 ~~ei~~vi~~L~r--~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
.+++.+.+.+++- +-.+++|.|+||+|||++|++|+..+
T Consensus 9 q~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~l 49 (633)
T TIGR02442 9 QEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALL 49 (633)
T ss_pred hHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhC
Confidence 4556666655554 33578999999999999999999876
No 359
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.87 E-value=0.002 Score=73.22 Aligned_cols=90 Identities=12% Similarity=0.176 Sum_probs=55.0
Q ss_pred CeEEEEecCCCCCchHHHHHHHHHHHHcCCC-CCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCEE
Q 003769 604 QTWLLFLGADDHNHGKEKIAREIAKVVFGSH-SNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHRV 682 (796)
Q Consensus 604 ~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~-~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~V 682 (796)
..+++|.||+| +|||.|+++++..+.... ...++.++..++. .+... .. ..+-.+.+.+.++. ..|
T Consensus 136 ~n~l~l~G~~G--~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~-~~~~~-----~~---~~~~~~~~~~~~~~--~dl 202 (405)
T TIGR00362 136 YNPLFIYGGVG--LGKTHLLHAIGNEILENNPNAKVVYVSSEKFT-NDFVN-----AL---RNNKMEEFKEKYRS--VDL 202 (405)
T ss_pred CCeEEEECCCC--CcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHH-HHHHH-----HH---HcCCHHHHHHHHHh--CCE
Confidence 45799999999 999999999999987541 0456677665431 11100 00 01112345555553 579
Q ss_pred EEEcccccCCCChHHHHHHHHHHHH
Q 003769 683 FFMEDLDDHKVDSCYCQKGLKQAIE 707 (796)
Q Consensus 683 vl~deieka~~~~~~v~~~l~q~~d 707 (796)
++||||+...-.. ..+..|+..|+
T Consensus 203 LiiDDi~~l~~~~-~~~~~l~~~~n 226 (405)
T TIGR00362 203 LLIDDIQFLAGKE-RTQEEFFHTFN 226 (405)
T ss_pred EEEehhhhhcCCH-HHHHHHHHHHH
Confidence 9999999642233 44555555554
No 360
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.86 E-value=0.0027 Score=69.89 Aligned_cols=62 Identities=23% Similarity=0.272 Sum_probs=50.1
Q ss_pred CCCcchHHHHHHHHHHHhhccC-CCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCC
Q 003769 581 VPWQKEIMPEIARTILECRSKK-EQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQS 646 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~-~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~ 646 (796)
++||.+|=++-.=.+..-++.| .---.||.||+| .|||.||-.+|+.| |.. -.|+.+..||.
T Consensus 41 ~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~Gppg--TGKTAlA~gIa~eL-G~d-vPF~~isgsEi 103 (450)
T COG1224 41 LVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPG--TGKTALAMGIAREL-GED-VPFVAISGSEI 103 (450)
T ss_pred ccchHHHHHhhhHHHHHHHhCcccccEEEEECCCC--CcHHHHHHHHHHHh-CCC-CCceeecccee
Confidence 7999988776655556566643 334688999999 99999999999999 776 88999999863
No 361
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=96.85 E-value=0.0044 Score=70.87 Aligned_cols=132 Identities=19% Similarity=0.255 Sum_probs=101.4
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDV 660 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~ 660 (796)
+|||..|+..+-+.|..- .+.....|++|-|| +||.-+||++=++=--.. +.||.++++.. .|..--|-
T Consensus 225 iIG~S~am~~ll~~i~~V--A~Sd~tVLi~GETG--tGKElvAraIH~~S~R~~-kPfV~~NCAAl-PesLlESE----- 293 (550)
T COG3604 225 IIGRSPAMRQLLKEIEVV--AKSDSTVLIRGETG--TGKELVARAIHQLSPRRD-KPFVKLNCAAL-PESLLESE----- 293 (550)
T ss_pred ceecCHHHHHHHHHHHHH--hcCCCeEEEecCCC--ccHHHHHHHHHhhCcccC-CCceeeecccc-chHHHHHH-----
Confidence 899999999998888532 34455788999999 999999999999886666 99999999854 22221111
Q ss_pred CCCCCCch-hhHHHHHHhCCCE-------EEEEcccccCCCChHHHHHHHHHHHHcceEecCCC---ceecCCcEEEEee
Q 003769 661 ELGCCSYI-ERLGLALNENPHR-------VFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADG---EIVPLKDSIIIFS 729 (796)
Q Consensus 661 ~~~~~~~~-~~L~eavr~~P~~-------Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G---~~v~~~n~IiilT 729 (796)
.- ||. |-+|.|++.++=+ -+|||||=.- -. .+|.-||+++.+|.+.-=.| -+||-+ ||..
T Consensus 294 -LF--GHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel--PL-~lQaKLLRvLQegEieRvG~~r~ikVDVR---iIAA 364 (550)
T COG3604 294 -LF--GHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL--PL-ALQAKLLRVLQEGEIERVGGDRTIKVDVR---VIAA 364 (550)
T ss_pred -Hh--cccccccccchhccCcceeecCCCeEechhhccC--CH-HHHHHHHHHHhhcceeecCCCceeEEEEE---EEec
Confidence 11 222 5788888888866 5899999988 99 99999999999999986444 345555 8888
Q ss_pred CCC
Q 003769 730 CDS 732 (796)
Q Consensus 730 sn~ 732 (796)
+|-
T Consensus 365 TNR 367 (550)
T COG3604 365 TNR 367 (550)
T ss_pred cch
Confidence 873
No 362
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.84 E-value=0.017 Score=62.87 Aligned_cols=120 Identities=13% Similarity=0.123 Sum_probs=73.6
Q ss_pred HHHHHHHHHHh-h-ccCc-eEEEcCCcccHHHHHHHHHHHHHcCCCCCCCC---------------CceEEEeecccccc
Q 003769 194 DDVMSVLNALI-N-KKRN-TVIVGGNLAAIEGVIRGIIDQFERGQVPGDLR---------------YAQFISLPLFSFRN 255 (796)
Q Consensus 194 ~ei~~vi~~L~-r-~k~n-~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~---------------~~~v~~l~~~~l~a 255 (796)
+.+.++..... . +..+ .+|.||||+|||+++..||..+..-. |.... ...|+.++.+....
T Consensus 8 ~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~ 86 (325)
T COG0470 8 EAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCEN-PTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRK 86 (325)
T ss_pred hHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCC-cccCCcccchhhhhHHhhcCCCceEEecccccCC
Confidence 33444444444 3 4556 78899999999999999999886332 21111 23677777654433
Q ss_pred cchHHHHHHHHHHHHHHHhcc--CCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcE
Q 003769 256 QSKGEVEQKLVELSCHVKSYM--GRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERV 333 (796)
Q Consensus 256 ~~rge~E~rl~~l~~~v~~~~--~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l 333 (796)
. .-..+.++++.+...... ++.-|++|||++.+... ++|. |.+.+.. .....
T Consensus 87 ~--~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~---------------------A~na-llk~lEe--p~~~~ 140 (325)
T COG0470 87 I--DIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTED---------------------AANA-LLKTLEE--PPKNT 140 (325)
T ss_pred C--cchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHH---------------------HHHH-HHHHhcc--CCCCe
Confidence 1 124445666666554431 34679999999988653 5666 4433311 15667
Q ss_pred EEEEecC
Q 003769 334 WIMGIAS 340 (796)
Q Consensus 334 ~~IGatT 340 (796)
++|-+|+
T Consensus 141 ~~il~~n 147 (325)
T COG0470 141 RFILITN 147 (325)
T ss_pred EEEEEcC
Confidence 8888877
No 363
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.83 E-value=0.014 Score=68.23 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=48.0
Q ss_pred ccCce-EEEcCCcccHHHHHHHHHHHHHc--CCC--CC----------CCCCceEEEeecccccccchHHHHHHHHHHHH
Q 003769 206 KKRNT-VIVGGNLAAIEGVIRGIIDQFER--GQV--PG----------DLRYAQFISLPLFSFRNQSKGEVEQKLVELSC 270 (796)
Q Consensus 206 ~k~n~-vLvGepGvGKTaiv~~la~ri~~--~~v--p~----------~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~ 270 (796)
+-.++ +|.||+|+|||++++.+|..+.. +.- |- ......++.+|.++-. ...+ ++++.+
T Consensus 36 ~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~--gvd~----ir~I~~ 109 (486)
T PRK14953 36 RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNR--GIDD----IRALRD 109 (486)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCC--CHHH----HHHHHH
Confidence 44554 57899999999999999998752 111 10 0111245556543211 1112 345555
Q ss_pred HHHhcc--CCCEEEEEcchhhhhh
Q 003769 271 HVKSYM--GRGIVLYLGDLKWVAE 292 (796)
Q Consensus 271 ~v~~~~--~~~~ILfIDElh~l~~ 292 (796)
.+.... +..-|++|||+|.+..
T Consensus 110 ~~~~~P~~~~~KVvIIDEad~Lt~ 133 (486)
T PRK14953 110 AVSYTPIKGKYKVYIIDEAHMLTK 133 (486)
T ss_pred HHHhCcccCCeeEEEEEChhhcCH
Confidence 554321 4457999999998754
No 364
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.83 E-value=0.0043 Score=57.35 Aligned_cols=98 Identities=16% Similarity=0.299 Sum_probs=61.6
Q ss_pred EEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCEEEEEcc
Q 003769 608 LFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHRVFFMED 687 (796)
Q Consensus 608 lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vvl~de 687 (796)
+|.||+| +|||.+|+.||+.+.... ..+- ..... .+.+.. .|. .+|.+ +.||++||
T Consensus 2 ~i~G~~G--~GKS~l~~~l~~~l~~~~-----~~~~----~~~vy-~~~~~~-~~w-~gY~~----------q~vvi~DD 57 (107)
T PF00910_consen 2 WIYGPPG--IGKSTLAKELAKDLLKHI-----GEPT----KDSVY-TRNPGD-KFW-DGYQG----------QPVVIIDD 57 (107)
T ss_pred EEECCCC--CCHHHHHHHHHHHHHHHh-----ccCC----CCcEE-eCCCcc-chh-hccCC----------CcEEEEee
Confidence 5899999 999999999999986321 0000 00111 111111 111 12322 35899999
Q ss_pred cccCCCChH---HHHHHHHHHHHcceEecC----CCceecCCcEEEEeeCC
Q 003769 688 LDDHKVDSC---YCQKGLKQAIENGCIALA----DGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 688 ieka~~~~~---~v~~~l~q~~d~G~l~d~----~G~~v~~~n~IiilTsn 731 (796)
+-.. ... .....|+++++.-.+.-. ..+..-|.--+||+|||
T Consensus 58 ~~~~--~~~~~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN 106 (107)
T PF00910_consen 58 FGQD--NDGYNYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSN 106 (107)
T ss_pred cCcc--ccccchHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCC
Confidence 9988 430 367889999998877642 12236677789999998
No 365
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0015 Score=70.26 Aligned_cols=75 Identities=24% Similarity=0.343 Sum_probs=54.4
Q ss_pred cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCC
Q 003769 601 KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPH 680 (796)
Q Consensus 601 ~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~ 680 (796)
.+|.--+|+.||+| +||++|||++|-.- +|. |.++..|+- ++|--|- .--.+-+|.|.-|+|--
T Consensus 163 R~PwrgiLLyGPPG--TGKSYLAKAVATEA-nST---FFSvSSSDL------vSKWmGE----SEkLVknLFemARe~kP 226 (439)
T KOG0739|consen 163 RKPWRGILLYGPPG--TGKSYLAKAVATEA-NST---FFSVSSSDL------VSKWMGE----SEKLVKNLFEMARENKP 226 (439)
T ss_pred CCcceeEEEeCCCC--CcHHHHHHHHHhhc-CCc---eEEeehHHH------HHHHhcc----HHHHHHHHHHHHHhcCC
Confidence 56888899999999 99999999999776 343 655554321 2331110 01234689999999999
Q ss_pred EEEEEcccccC
Q 003769 681 RVFFMEDLDDH 691 (796)
Q Consensus 681 ~Vvl~deieka 691 (796)
|+||+||||-.
T Consensus 227 SIIFiDEiDsl 237 (439)
T KOG0739|consen 227 SIIFIDEIDSL 237 (439)
T ss_pred cEEEeehhhhh
Confidence 99999999843
No 366
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0024 Score=73.20 Aligned_cols=91 Identities=22% Similarity=0.269 Sum_probs=63.4
Q ss_pred CCCcchHHHHHHHHHHHhhc---------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccc
Q 003769 581 VPWQKEIMPEIARTILECRS---------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDC 651 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs---------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~ 651 (796)
|-|=+||-.++-..|--.|. +=|-|. |+.||+| +|||-|||++|-.- | -.|.....||+ ++.
T Consensus 306 VkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGV-LLvGPPG--TGKTlLARAvAGEA-~---VPFF~~sGSEF--dEm 376 (752)
T KOG0734|consen 306 VKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGV-LLVGPPG--TGKTLLARAVAGEA-G---VPFFYASGSEF--DEM 376 (752)
T ss_pred ccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCce-EEeCCCC--CchhHHHHHhhccc-C---CCeEeccccch--hhh
Confidence 66666666666666655554 335555 5899999 99999999999443 2 34655555565 232
Q ss_pred cccccCCCCCCCCCC--chhhHHHHHHhCCCEEEEEccccc
Q 003769 652 RTKKRSRDVELGCCS--YIERLGLALNENPHRVFFMEDLDD 690 (796)
Q Consensus 652 ~~~k~~~~~~~~~~~--~~~~L~eavr~~P~~Vvl~deiek 690 (796)
|+|.| -+--|..+-+.+--+||||||||-
T Consensus 377 ----------~VGvGArRVRdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 377 ----------FVGVGARRVRDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred ----------hhcccHHHHHHHHHHHHhcCCeEEEEechhh
Confidence 34443 346789999999999999999993
No 367
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=96.79 E-value=0.0068 Score=71.41 Aligned_cols=63 Identities=13% Similarity=0.133 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHHhh---ccCceEEEcCCcccHHHHHHHHHHHHH-cCCCCCCCCCceEEEeeccccc
Q 003769 192 DSDDVMSVLNALIN---KKRNTVIVGGNLAAIEGVIRGIIDQFE-RGQVPGDLRYAQFISLPLFSFR 254 (796)
Q Consensus 192 r~~ei~~vi~~L~r---~k~n~vLvGepGvGKTaiv~~la~ri~-~~~vp~~L~~~~v~~l~~~~l~ 254 (796)
....++++.+.+.+ ...+++|.||+||||+.+|+.+-.... ....+..-++..|+.+|.+.+-
T Consensus 224 ~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~ 290 (538)
T PRK15424 224 QSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIA 290 (538)
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCC
Confidence 55556666666544 667888899999999999999876411 1111112246789999988764
No 368
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0052 Score=66.60 Aligned_cols=107 Identities=25% Similarity=0.313 Sum_probs=71.0
Q ss_pred CCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCch-hhHHHHHHhCCC
Q 003769 602 KEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYI-ERLGLALNENPH 680 (796)
Q Consensus 602 ~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~-~~L~eavr~~P~ 680 (796)
+|.--+++.||.| .|||-+|+++|..+ | -+|+..-+|+. ++|.+|-+ +-.+ ++...|=..-|
T Consensus 164 k~Pkg~ll~GppG--tGKTlla~~Vaa~m-g---~nfl~v~ss~l------v~kyiGEs----aRlIRemf~yA~~~~p- 226 (388)
T KOG0651|consen 164 KPPKGLLLYGPPG--TGKTLLARAVAATM-G---VNFLKVVSSAL------VDKYIGES----ARLIRDMFRYAREVIP- 226 (388)
T ss_pred CCCceeEEeCCCC--CchhHHHHHHHHhc-C---CceEEeeHhhh------hhhhcccH----HHHHHHHHHHHhhhCc-
Confidence 4555677999999 99999999999999 4 34776655532 12222211 0111 34444444455
Q ss_pred EEEEEccccc-----------CCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCCCC
Q 003769 681 RVFFMEDLDD-----------HKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDSLD 734 (796)
Q Consensus 681 ~Vvl~deiek-----------a~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~~~ 734 (796)
++||+||||- + +. .|+..|++.++.=.=-|. +...=+|||+|-||
T Consensus 227 ciifmdeiDAigGRr~se~Ts~--dr-eiqrTLMeLlnqmdgfd~------l~rVk~ImatNrpd 282 (388)
T KOG0651|consen 227 CIIFMDEIDAIGGRRFSEGTSS--DR-EIQRTLMELLNQMDGFDT------LHRVKTIMATNRPD 282 (388)
T ss_pred eEEeehhhhhhccEEeccccch--hH-HHHHHHHHHHHhhccchh------cccccEEEecCCcc
Confidence 9999999984 5 78 999999999983222222 34455999999763
No 369
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0025 Score=76.58 Aligned_cols=128 Identities=20% Similarity=0.216 Sum_probs=87.6
Q ss_pred CCCcchHHHHHHHHHHHhhc--------cC-CCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccc
Q 003769 581 VPWQKEIMPEIARTILECRS--------KK-EQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDC 651 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs--------~~-~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~ 651 (796)
|-|.++|-.+|-.-|.-.+. .| |-|. |++||+| +|||-||||+|-.= | =.|+.+..||+ .|-.
T Consensus 313 VAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGv-LL~GPPG--TGKTLLAKAiAGEA-g---VPF~svSGSEF-vE~~ 384 (774)
T KOG0731|consen 313 VAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGV-LLVGPPG--TGKTLLAKAIAGEA-G---VPFFSVSGSEF-VEMF 384 (774)
T ss_pred ccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCce-EEECCCC--CcHHHHHHHHhccc-C---CceeeechHHH-HHHh
Confidence 88999999998888876666 34 4455 5899999 99999999999654 3 45888888777 3322
Q ss_pred cccccCCCCCCCCCCchhhHHHHHHhCCCEEEEEcccccCC----------CChHHHHHHHHHHHHcceEecCCCceecC
Q 003769 652 RTKKRSRDVELGCCSYIERLGLALNENPHRVFFMEDLDDHK----------VDSCYCQKGLKQAIENGCIALADGEIVPL 721 (796)
Q Consensus 652 ~~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vvl~deieka~----------~~~~~v~~~l~q~~d~G~l~d~~G~~v~~ 721 (796)
+ ..|..-+.-|...-|.|--++|++||||--+ -+. +--..|-|.+-+ -+|-..+
T Consensus 385 ---~------g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~-e~e~tlnQll~e-----mDgf~~~- 448 (774)
T KOG0731|consen 385 ---V------GVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQD-EREQTLNQLLVE-----MDGFETS- 448 (774)
T ss_pred ---c------ccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCCh-HHHHHHHHHHHH-----hcCCcCC-
Confidence 1 1233445688999999999999999999430 012 223344444421 2333333
Q ss_pred CcEEEEeeCCC
Q 003769 722 KDSIIIFSCDS 732 (796)
Q Consensus 722 ~n~IiilTsn~ 732 (796)
++.||+-+||-
T Consensus 449 ~~vi~~a~tnr 459 (774)
T KOG0731|consen 449 KGVIVLAATNR 459 (774)
T ss_pred CcEEEEeccCC
Confidence 67888888885
No 370
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.72 E-value=0.0082 Score=62.23 Aligned_cols=120 Identities=16% Similarity=0.228 Sum_probs=57.8
Q ss_pred CCCChHHHHHHHHHHhhccCceEEEcCCcccHHHHHHHHHHHHH-cCCCCCCCCCceEEEe-ecccccc---cchHHHHH
Q 003769 189 LGRDSDDVMSVLNALINKKRNTVIVGGNLAAIEGVIRGIIDQFE-RGQVPGDLRYAQFISL-PLFSFRN---QSKGEVEQ 263 (796)
Q Consensus 189 ldpr~~ei~~vi~~L~r~k~n~vLvGepGvGKTaiv~~la~ri~-~~~vp~~L~~~~v~~l-~~~~l~a---~~rge~E~ 263 (796)
+.|++.+=...++.|. ....+++.|++|||||.++-+.|.... +|.+ .+++-. +...... -.-|+.++
T Consensus 2 I~p~~~~Q~~~~~al~-~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~------~kiii~Rp~v~~~~~lGflpG~~~e 74 (205)
T PF02562_consen 2 IKPKNEEQKFALDALL-NNDLVIVNGPAGTGKTFLALAAALELVKEGEY------DKIIITRPPVEAGEDLGFLPGDLEE 74 (205)
T ss_dssp ----SHHHHHHHHHHH-H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-------SEEEEEE-S--TT----SS------
T ss_pred ccCCCHHHHHHHHHHH-hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCC------cEEEEEecCCCCccccccCCCCHHH
Confidence 4567778888888888 566788899999999999998886544 4432 233333 2211111 23366666
Q ss_pred HHHHHH----HHHHh------------c----------c-C---CCEEEEEcchhhhhhhhcccCCCCccccCCCcchhH
Q 003769 264 KLVELS----CHVKS------------Y----------M-G---RGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVE 313 (796)
Q Consensus 264 rl~~l~----~~v~~------------~----------~-~---~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~ 313 (796)
|+.-.+ +.+.. . . + .+.+++|||...+...
T Consensus 75 K~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~-------------------- 134 (205)
T PF02562_consen 75 KMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPE-------------------- 134 (205)
T ss_dssp ---TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HH--------------------
T ss_pred HHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHH--------------------
Confidence 653321 11111 0 0 1 2578888887755432
Q ss_pred HHHHHHHHHHhhhcCCCCcEEEEEecC
Q 003769 314 EYVVMEIKRLVFEIGESERVWIMGIAS 340 (796)
Q Consensus 314 d~~~~eLk~L~~~~~~~G~l~~IGatT 340 (796)
++|.+++.+|++.++.|+|=.+
T Consensus 135 -----~~k~ilTR~g~~skii~~GD~~ 156 (205)
T PF02562_consen 135 -----ELKMILTRIGEGSKIIITGDPS 156 (205)
T ss_dssp -----HHHHHHTTB-TT-EEEEEE---
T ss_pred -----HHHHHHcccCCCcEEEEecCce
Confidence 3787887777777888888654
No 371
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.71 E-value=0.0035 Score=69.99 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=31.4
Q ss_pred ChHHHHHHHHHH-hh-ccCceEEEcCCcccHHHHHHHHHHHHHc
Q 003769 192 DSDDVMSVLNAL-IN-KKRNTVIVGGNLAAIEGVIRGIIDQFER 233 (796)
Q Consensus 192 r~~ei~~vi~~L-~r-~k~n~vLvGepGvGKTaiv~~la~ri~~ 233 (796)
..+++.+.+-.. .. +-.+++|.|++|+|||++++.++.-+..
T Consensus 21 Gq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~ 64 (350)
T CHL00081 21 GQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPE 64 (350)
T ss_pred ChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 455555544443 34 6678999999999999999999887654
No 372
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.71 E-value=0.026 Score=63.62 Aligned_cols=37 Identities=11% Similarity=0.039 Sum_probs=28.8
Q ss_pred HHHHHHHhh-ccCc-eEEEcCCcccHHHHHHHHHHHHHc
Q 003769 197 MSVLNALIN-KKRN-TVIVGGNLAAIEGVIRGIIDQFER 233 (796)
Q Consensus 197 ~~vi~~L~r-~k~n-~vLvGepGvGKTaiv~~la~ri~~ 233 (796)
..+.+.+.+ +..+ .+|.||+|+||++++..+|+.+..
T Consensus 29 ~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc 67 (365)
T PRK07471 29 AALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLA 67 (365)
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhC
Confidence 445555565 5555 668899999999999999999864
No 373
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.71 E-value=0.029 Score=64.59 Aligned_cols=80 Identities=15% Similarity=0.181 Sum_probs=46.7
Q ss_pred HHHHHHHcCCChHHHHHHHHhhccCCCCCCCCCCCCCCChHHHHHHHHHHhh-------------ccCceEEEcCCcccH
Q 003769 154 VSRVMREAGFSSSQVKIKVEENVPLGICSQSTNKSLGRDSDDVMSVLNALIN-------------KKRNTVIVGGNLAAI 220 (796)
Q Consensus 154 ~a~vL~~~Gis~~~l~~~v~~~v~~~~~s~~p~g~ldpr~~ei~~vi~~L~r-------------~k~n~vLvGepGvGK 220 (796)
+...|-+++++...+++.+. .+........+...+.|++.-++.+.+.|.+ .++.++++|++|+||
T Consensus 30 i~~aLl~adV~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~~~~~p~vI~lvG~~GsGK 108 (437)
T PRK00771 30 IQRALLQADVNVKLVKELSK-SIKERALEEEPPKGLTPREHVIKIVYEELVKLLGEETEPLVLPLKPQTIMLVGLQGSGK 108 (437)
T ss_pred HHHHHHHCCCCHHHHHHHHH-HHHHHHhcccccccCCcHHHHHHHHHHHHHHHhCCCccccccCCCCeEEEEECCCCCcH
Confidence 34556666777666555444 2211100001112234455556655555543 245678899999999
Q ss_pred HHHHHHHHHHHHcC
Q 003769 221 EGVIRGIIDQFERG 234 (796)
Q Consensus 221 Taiv~~la~ri~~~ 234 (796)
|+++..||..+.+.
T Consensus 109 TTtaakLA~~L~~~ 122 (437)
T PRK00771 109 TTTAAKLARYFKKK 122 (437)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999988753
No 374
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=96.68 E-value=0.0052 Score=66.94 Aligned_cols=126 Identities=15% Similarity=0.186 Sum_probs=76.8
Q ss_pred CcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCce-EEecCC---CCccccccccccCC
Q 003769 583 WQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNF-TNLSSS---QSRQDDCRTKKRSR 658 (796)
Q Consensus 583 gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~-i~~dms---~~~~~~~~~~k~~~ 658 (796)
+|..++..+..++.+- |-.-.+||.|| +||+.+|+.+|+.++....... -+-.+. ....+.|.-...+.
T Consensus 6 ~q~~~~~~L~~~~~~~---rl~hAyLf~G~----~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~ 78 (290)
T PRK07276 6 KQPKVFQRFQTILEQD---RLNHAYLFSGD----FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIE 78 (290)
T ss_pred HHHHHHHHHHHHHHcC---CcceeeeeeCC----ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeec
Confidence 4666666666666543 44456779994 6799999999999998651110 000000 00011221111111
Q ss_pred CCCCCCC----CchhhHHHHHHhC----CCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeC
Q 003769 659 DVELGCC----SYIERLGLALNEN----PHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSC 730 (796)
Q Consensus 659 ~~~~~~~----~~~~~L~eavr~~----P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTs 730 (796)
|. |. +.+-.|.+.+... +++|++||++|+. +. ...|.||..+|+ +=.+++|||+|
T Consensus 79 -p~--~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m--~~-~AaNaLLKtLEE-----------Pp~~t~~iL~t 141 (290)
T PRK07276 79 -PQ--GQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKM--HV-NAANSLLKVIEE-----------PQSEIYIFLLT 141 (290)
T ss_pred -CC--CCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhc--CH-HHHHHHHHHhcC-----------CCCCeEEEEEE
Confidence 10 11 1223455555544 4699999999999 99 999999999976 23689999988
Q ss_pred CC
Q 003769 731 DS 732 (796)
Q Consensus 731 n~ 732 (796)
+.
T Consensus 142 ~~ 143 (290)
T PRK07276 142 ND 143 (290)
T ss_pred CC
Confidence 64
No 375
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.67 E-value=0.0043 Score=76.90 Aligned_cols=66 Identities=15% Similarity=0.182 Sum_probs=59.5
Q ss_pred hccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHhhcCCCChhhHHHHHHHHHHHhcc
Q 003769 11 ALTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKALELCFNVALNR 81 (796)
Q Consensus 11 rfT~~A~~vL~~A~~~Ar~~gh~~VtpeHLLlaLL~~~~g~l~~iL~~~~gi~~~~d~~aL~~~l~~~L~r 81 (796)
.||+.+.++|..|..+|..++|.+|+++|||+||+.++++.+..+|.. +|+ +. ..++..+...+..
T Consensus 79 ~~S~~~~~vL~~A~~~A~~~~~~~I~~eHLLlALL~~~ds~a~~iL~~-~gv-d~---~~L~~~l~~~l~~ 144 (821)
T CHL00095 79 PFTPRAKRVLEMSLEEARDLGHNYIGTEHLLLALLEEGEGVAARVLEN-LGV-DL---SKIRSLILNLIGE 144 (821)
T ss_pred ccCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhCCCchHHHHHHH-cCC-CH---HHHHHHHHHHhcc
Confidence 599999999999999999999999999999999999989999999999 998 66 7888777766543
No 376
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.66 E-value=0.0039 Score=69.44 Aligned_cols=61 Identities=23% Similarity=0.260 Sum_probs=47.1
Q ss_pred CCCcchHHHHHHHHHHHhhccC-CCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCC
Q 003769 581 VPWQKEIMPEIARTILECRSKK-EQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQ 645 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~-~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~ 645 (796)
.+||.+|=++..=.+..-+..| .---+||.||+| .|||.||-++|+.| |.. -.|+.+..||
T Consensus 26 lVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppG--tGKTAlA~~ia~eL-G~~-~PF~~isgSE 87 (398)
T PF06068_consen 26 LVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPG--TGKTALAMAIAKEL-GED-VPFVSISGSE 87 (398)
T ss_dssp EES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TT--SSHHHHHHHHHHHC-TTT-S-EEEEEGGG
T ss_pred ccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCC--CCchHHHHHHHHHh-CCC-CCeeEcccce
Confidence 7999888777766666667744 334788999999 99999999999999 666 8999999986
No 377
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.65 E-value=0.0037 Score=65.28 Aligned_cols=94 Identities=15% Similarity=0.156 Sum_probs=59.1
Q ss_pred ChHHHHHHHHHHhh--ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHH
Q 003769 192 DSDDVMSVLNALIN--KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELS 269 (796)
Q Consensus 192 r~~ei~~vi~~L~r--~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~ 269 (796)
.+++...-++++++ .-.|+++.||||+|||+-+..||.++--. ..+. -+.+|+.+.=.. ..-+..++|-.-
T Consensus 31 GNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~----~~ke-~vLELNASdeRG--IDvVRn~IK~FA 103 (333)
T KOG0991|consen 31 GNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGD----SYKE-AVLELNASDERG--IDVVRNKIKMFA 103 (333)
T ss_pred CCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhCh----hhhh-HhhhccCccccc--cHHHHHHHHHHH
Confidence 45677777788887 78899999999999999999999987422 2222 256666554222 122333333222
Q ss_pred HH-HHhccCCCEEEEEcchhhhhh
Q 003769 270 CH-VKSYMGRGIVLYLGDLKWVAE 292 (796)
Q Consensus 270 ~~-v~~~~~~~~ILfIDElh~l~~ 292 (796)
+. |.--.+..-|+++||.+.+..
T Consensus 104 Q~kv~lp~grhKIiILDEADSMT~ 127 (333)
T KOG0991|consen 104 QKKVTLPPGRHKIIILDEADSMTA 127 (333)
T ss_pred HhhccCCCCceeEEEeeccchhhh
Confidence 11 110003456999999998875
No 378
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.65 E-value=0.0028 Score=63.72 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=29.3
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEee
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLP 249 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~ 249 (796)
..|++|||.+|+|||||-+.||+++ |.+|+-.|
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L----------~~~F~D~D 34 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKAL----------NLPFIDTD 34 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHc----------CCCcccch
Confidence 5789999999999999999999987 56787777
No 379
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.63 E-value=0.0037 Score=74.06 Aligned_cols=71 Identities=13% Similarity=0.103 Sum_probs=53.3
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhc-c-CCCEEEE
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSY-M-GRGIVLY 283 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~-~-~~~~ILf 283 (796)
.++=.+|.||||.|||++|+-+|.. .|+.|+.++.+.=.+ -..+++|+..++.-=.-. + .+|+-|+
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkq----------aGYsVvEINASDeRt--~~~v~~kI~~avq~~s~l~adsrP~CLV 392 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQ----------AGYSVVEINASDERT--APMVKEKIENAVQNHSVLDADSRPVCLV 392 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHh----------cCceEEEeccccccc--HHHHHHHHHHHHhhccccccCCCcceEE
Confidence 7777889999999999999999985 379999999876443 445666766555432211 1 4689999
Q ss_pred Ecchh
Q 003769 284 LGDLK 288 (796)
Q Consensus 284 IDElh 288 (796)
||||+
T Consensus 393 iDEID 397 (877)
T KOG1969|consen 393 IDEID 397 (877)
T ss_pred Eeccc
Confidence 99997
No 380
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=96.63 E-value=0.008 Score=70.75 Aligned_cols=56 Identities=16% Similarity=0.077 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHhh---ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeeccccc
Q 003769 192 DSDDVMSVLNALIN---KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFR 254 (796)
Q Consensus 192 r~~ei~~vi~~L~r---~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~ 254 (796)
...-++++.+.+.+ ...+++|.||+||||+.+|+.+-..=. -++..|+.+|.+++-
T Consensus 217 ~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~-------r~~~pfv~inC~~l~ 275 (526)
T TIGR02329 217 ASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSG-------RRDFPFVAINCGAIA 275 (526)
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcC-------cCCCCEEEeccccCC
Confidence 55556666666544 667888899999999999999865321 235689999987764
No 381
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=96.60 E-value=0.011 Score=69.67 Aligned_cols=56 Identities=14% Similarity=0.049 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHHhh---ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeeccccc
Q 003769 192 DSDDVMSVLNALIN---KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFR 254 (796)
Q Consensus 192 r~~ei~~vi~~L~r---~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~ 254 (796)
...-++++++.+.+ ....++|.||+||||+.+|+++-..-.+ ++..|+.+|.+.+-
T Consensus 209 ~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r-------~~~pfv~inca~~~ 267 (520)
T PRK10820 209 VSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPR-------GKKPFLALNCASIP 267 (520)
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCC-------CCCCeEEeccccCC
Confidence 56666666666655 6666788999999999999997543222 24678999987653
No 382
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.58 E-value=0.034 Score=62.35 Aligned_cols=41 Identities=7% Similarity=-0.025 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhh-ccC-ceEEEcCCcccHHHHHHHHHHHHHcC
Q 003769 194 DDVMSVLNALIN-KKR-NTVIVGGNLAAIEGVIRGIIDQFERG 234 (796)
Q Consensus 194 ~ei~~vi~~L~r-~k~-n~vLvGepGvGKTaiv~~la~ri~~~ 234 (796)
+-+..+...+.+ +.. ..+|.||+|+|||+++..+|+.+...
T Consensus 30 ~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 30 EAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred HHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 334555555555 433 57788999999999999999998763
No 383
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=96.58 E-value=0.0068 Score=69.49 Aligned_cols=86 Identities=12% Similarity=0.211 Sum_probs=51.5
Q ss_pred HHHHHHHHhhccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHH----------
Q 003769 196 VMSVLNALINKKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKL---------- 265 (796)
Q Consensus 196 i~~vi~~L~r~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl---------- 265 (796)
+.+.+..++....+++|.||+|+||+++++.+-..-.. .+..|+.+|.+.+.. ..++..|
T Consensus 151 l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~-------~~~~~v~v~c~~~~~---~~~~~~lfg~~~~~~~~ 220 (445)
T TIGR02915 151 ICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDR-------KDKRFVAINCAAIPE---NLLESELFGYEKGAFTG 220 (445)
T ss_pred HHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCc-------CCCCeEEEECCCCCh---HHHHHHhcCCCCCCcCC
Confidence 33333333336678889999999999999988754221 245789999877632 1111111
Q ss_pred --HHHHHHHHhccCCCEEEEEcchhhhhhh
Q 003769 266 --VELSCHVKSYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 266 --~~l~~~v~~~~~~~~ILfIDElh~l~~~ 293 (796)
+.....+.. ..+-.|||||++.|-..
T Consensus 221 ~~~~~~g~~~~--a~~gtl~l~~i~~l~~~ 248 (445)
T TIGR02915 221 AVKQTLGKIEY--AHGGTLFLDEIGDLPLN 248 (445)
T ss_pred CccCCCCceeE--CCCCEEEEechhhCCHH
Confidence 000011222 23567999999988654
No 384
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.57 E-value=0.00098 Score=62.59 Aligned_cols=100 Identities=15% Similarity=0.134 Sum_probs=63.6
Q ss_pred CCeEEEEecCCCCCchHHHHHHHHHHHHcCC-----CCCceEEecCCCCcc-ccc--cccccCCCCCCCCC---CchhhH
Q 003769 603 EQTWLLFLGADDHNHGKEKIAREIAKVVFGS-----HSNNFTNLSSSQSRQ-DDC--RTKKRSRDVELGCC---SYIERL 671 (796)
Q Consensus 603 ~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~-----~~~~~i~~dms~~~~-~~~--~~~k~~~~~~~~~~---~~~~~L 671 (796)
..+.+++.||+| +|||.+++.+++.+... . ..++.+++..... ... ....-.+.+.-.+. ...+.+
T Consensus 3 ~~~~~~i~G~~G--~GKT~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~ 79 (131)
T PF13401_consen 3 SQRILVISGPPG--SGKTTLIKRLARQLNAEAEIKNH-PDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLL 79 (131)
T ss_dssp ----EEEEE-TT--SSHHHHHHHHHHHHHHHHHHCCC-EEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHH
T ss_pred CCcccEEEcCCC--CCHHHHHHHHHHHhHHhhhccCC-CcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHH
Confidence 446789999999 99999999999988521 2 5577887763311 111 00000111100001 223689
Q ss_pred HHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHH
Q 003769 672 GLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIE 707 (796)
Q Consensus 672 ~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d 707 (796)
.+.++++...||+|||++... .. .+++.|+..++
T Consensus 80 ~~~l~~~~~~~lviDe~~~l~-~~-~~l~~l~~l~~ 113 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEADHLF-SD-EFLEFLRSLLN 113 (131)
T ss_dssp HHHHHHCTEEEEEEETTHHHH-TH-HHHHHHHHHTC
T ss_pred HHHHHhcCCeEEEEeChHhcC-CH-HHHHHHHHHHh
Confidence 999999999999999999873 46 88888888877
No 385
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.57 E-value=0.0046 Score=66.22 Aligned_cols=98 Identities=16% Similarity=0.244 Sum_probs=64.4
Q ss_pred CCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCC-CCccccccccccCCCCCCCCCCchhhHHHHHHhCCCE
Q 003769 603 EQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSS-QSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHR 681 (796)
Q Consensus 603 ~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms-~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~ 681 (796)
.-+.++|.||+| .|||++.++|...+-... ..++.+.-. |+........... ..-.+.+|...|..++|.+|.
T Consensus 126 ~~~~ili~G~tG--SGKTT~l~all~~i~~~~-~~iv~iEd~~E~~l~~~~~~~~~--~~~~~~~~~~~l~~~LR~~pD- 199 (270)
T PF00437_consen 126 GRGNILISGPTG--SGKTTLLNALLEEIPPED-ERIVTIEDPPELRLPGPNQIQIQ--TRRDEISYEDLLKSALRQDPD- 199 (270)
T ss_dssp TTEEEEEEESTT--SSHHHHHHHHHHHCHTTT-SEEEEEESSS-S--SCSSEEEEE--EETTTBSHHHHHHHHTTS--S-
T ss_pred cceEEEEECCCc--cccchHHHHHhhhccccc-cceEEeccccceeecccceEEEE--eecCcccHHHHHHHHhcCCCC-
Confidence 458999999999 999999999999997774 567776533 3321110000000 001234667889999999995
Q ss_pred EEEEcccccCCCChHHHHHHHHHHHHcceEe
Q 003769 682 VFFMEDLDDHKVDSCYCQKGLKQAIENGCIA 712 (796)
Q Consensus 682 Vvl~deieka~~~~~~v~~~l~q~~d~G~l~ 712 (796)
+|++.||-.. +.+.. ++++..|...
T Consensus 200 ~iiigEiR~~-----e~~~~-~~a~~tGh~~ 224 (270)
T PF00437_consen 200 VIIIGEIRDP-----EAAEA-IQAANTGHLG 224 (270)
T ss_dssp EEEESCE-SC-----HHHHH-HHHHHTT-EE
T ss_pred cccccccCCH-----hHHHH-HHhhccCCce
Confidence 8889999877 77777 8899887653
No 386
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.011 Score=66.58 Aligned_cols=138 Identities=14% Similarity=0.119 Sum_probs=85.3
Q ss_pred CCCcchHHHHHHHHHHHhhc-cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCc-eEEecCCCCcccccccccc--
Q 003769 581 VPWQKEIMPEIARTILECRS-KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNN-FTNLSSSQSRQDDCRTKKR-- 656 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs-~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~-~i~~dms~~~~~~~~~~k~-- 656 (796)
+++=++-+..++..+.-.-. .+|. .+++.||+| +|||.++|.+++.+..+.... .+.||+-.+.+......+.
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~-n~~iyG~~G--TGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPS-NIIIYGPTG--TGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCc-cEEEECCCC--CCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHH
Confidence 44446666666666544333 4454 488999999 999999999999999874233 5889987663222111111
Q ss_pred -CCCCCCCCC---CchhhHHHHHHh-CCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCC
Q 003769 657 -SRDVELGCC---SYIERLGLALNE-NPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 657 -~~~~~~~~~---~~~~~L~eavr~-~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn 731 (796)
.+.+...|- .+...|.+.+.. +..-||.||||+.- -. .-.+.|++.+.-..-- -...+||+.+|
T Consensus 96 ~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L--~~-~~~~~LY~L~r~~~~~--------~~~v~vi~i~n 164 (366)
T COG1474 96 KLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDAL--VD-KDGEVLYSLLRAPGEN--------KVKVSIIAVSN 164 (366)
T ss_pred HcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhh--cc-ccchHHHHHHhhcccc--------ceeEEEEEEec
Confidence 111112233 233678888877 66778999999977 33 2225666666432211 24567788888
Q ss_pred C
Q 003769 732 S 732 (796)
Q Consensus 732 ~ 732 (796)
.
T Consensus 165 ~ 165 (366)
T COG1474 165 D 165 (366)
T ss_pred c
Confidence 6
No 387
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.55 E-value=0.021 Score=68.34 Aligned_cols=25 Identities=8% Similarity=-0.037 Sum_probs=22.3
Q ss_pred ceEEEcCCcccHHHHHHHHHHHHHc
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQFER 233 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri~~ 233 (796)
..+|.||+|||||++++.+|+.+..
T Consensus 40 a~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4778999999999999999998854
No 388
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.54 E-value=0.006 Score=65.26 Aligned_cols=136 Identities=13% Similarity=0.185 Sum_probs=88.8
Q ss_pred CeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccc------cccc---cCCCCCCCCC-C-ch-hhH
Q 003769 604 QTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDC------RTKK---RSRDVELGCC-S-YI-ERL 671 (796)
Q Consensus 604 ~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~------~~~k---~~~~~~~~~~-~-~~-~~L 671 (796)
.--+||.||+| .||++.+.+|-+.+||.- -.=++|++..+-+... +++- +--.|...|. + ++ +.|
T Consensus 34 ~PHll~yGPSG--aGKKTrimclL~elYG~g-veklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQel 110 (351)
T KOG2035|consen 34 FPHLLVYGPSG--AGKKTRIMCLLRELYGVG-VEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQEL 110 (351)
T ss_pred CCeEEEECCCC--CCchhhHHHHHHHHhCCC-chheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHH
Confidence 35799999999 999999999999999955 4456777754321111 0000 0001221121 1 11 222
Q ss_pred H---------HHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCCCCCCCCcCCC
Q 003769 672 G---------LALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDSLDSVPSACSH 742 (796)
Q Consensus 672 ~---------eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~~~~~s~~~s~ 742 (796)
. |---++||.||++-|.|+. .. |-|..|.+-||. --+||=+||.||+. |+.--|
T Consensus 111 lKevAQt~qie~~~qr~fKvvvi~ead~L--T~-dAQ~aLRRTMEk-----------Ys~~~RlIl~cns~---SriIep 173 (351)
T KOG2035|consen 111 LKEVAQTQQIETQGQRPFKVVVINEADEL--TR-DAQHALRRTMEK-----------YSSNCRLILVCNST---SRIIEP 173 (351)
T ss_pred HHHHHhhcchhhccccceEEEEEechHhh--hH-HHHHHHHHHHHH-----------HhcCceEEEEecCc---ccchhH
Confidence 2 2234569999999999999 99 999999999964 34678899999843 333223
Q ss_pred CCCCCCcccCCCCCccceeeccccccccc
Q 003769 743 QNKRPKTEEKDDDCNLSLDLNIAIEDEDD 771 (796)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 771 (796)
. +++||-+..++-.+++
T Consensus 174 I------------rSRCl~iRvpaps~ee 190 (351)
T KOG2035|consen 174 I------------RSRCLFIRVPAPSDEE 190 (351)
T ss_pred H------------hhheeEEeCCCCCHHH
Confidence 3 3789999888744444
No 389
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.53 E-value=0.0042 Score=80.35 Aligned_cols=118 Identities=13% Similarity=0.129 Sum_probs=70.7
Q ss_pred CCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCcccccc---cccc--CC------------------
Q 003769 602 KEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCR---TKKR--SR------------------ 658 (796)
Q Consensus 602 ~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~---~~k~--~~------------------ 658 (796)
+|.--.|+.||.| +|||.|||+||.... -+|+++.+++.- +... .... .|
T Consensus 1628 ~pPKGILLiGPPG--TGKTlLAKALA~es~----VPFIsISgs~fl-~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e 1700 (2281)
T CHL00206 1628 SPSRGILVIGSIG--TGRSYLVKYLATNSY----VPFITVFLNKFL-DNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTE 1700 (2281)
T ss_pred CCCCceEEECCCC--CCHHHHHHHHHHhcC----CceEEEEHHHHh-hcccccccccccccccccccccccccccccchh
Confidence 3444566999999 999999999999763 569999988541 1100 0000 00
Q ss_pred -------CCCCCCCC----chhhHHHHHHhCCCEEEEEcccccCCCChHH--HHHHHHHHHHcceEecCCCceecCCcEE
Q 003769 659 -------DVELGCCS----YIERLGLALNENPHRVFFMEDLDDHKVDSCY--CQKGLKQAIENGCIALADGEIVPLKDSI 725 (796)
Q Consensus 659 -------~~~~~~~~----~~~~L~eavr~~P~~Vvl~deieka~~~~~~--v~~~l~q~~d~G~l~d~~G~~v~~~n~I 725 (796)
..++.+.+ ++..+.+..|++.=+||+|||||..+.+.+. ..+.|+.-|+... ..-+-++.|
T Consensus 1701 ~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~------~~~s~~~VI 1774 (2281)
T CHL00206 1701 LLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDC------ERCSTRNIL 1774 (2281)
T ss_pred hhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhcccc------ccCCCCCEE
Confidence 00001111 1334677778888899999999987332211 2456666664311 111235788
Q ss_pred EEeeCCC
Q 003769 726 IIFSCDS 732 (796)
Q Consensus 726 iilTsn~ 732 (796)
||.+||-
T Consensus 1775 VIAATNR 1781 (2281)
T CHL00206 1775 VIASTHI 1781 (2281)
T ss_pred EEEeCCC
Confidence 8888885
No 390
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.53 E-value=0.0074 Score=72.30 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=39.3
Q ss_pred CCCcchHHHHHHHHHHHhhc-cCCCeEEEEecCCCCCchHHHHHHHHHHHH
Q 003769 581 VPWQKEIMPEIARTILECRS-KKEQTWLLFLGADDHNHGKEKIAREIAKVV 630 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs-~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~ 630 (796)
|.||++.|..|...+..... .++.--++|.||+| +|||.+++.||+.+
T Consensus 86 l~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~G--sGKTTl~~~la~~l 134 (637)
T TIGR00602 86 LAVHKKKIEEVETWLKAQVLENAPKRILLITGPSG--CGKSTTIKILSKEL 134 (637)
T ss_pred hcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCC--CCHHHHHHHHHHHh
Confidence 79999999988877765433 34445689999999 99999999999876
No 391
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.52 E-value=0.0062 Score=66.97 Aligned_cols=106 Identities=14% Similarity=0.127 Sum_probs=63.4
Q ss_pred CCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCEE
Q 003769 603 EQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHRV 682 (796)
Q Consensus 603 ~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~V 682 (796)
..-.++|.||+| +|||.||.+||..+-... ...+-+.+.++ ..+...+ +.... ...+.+.++ -..|
T Consensus 155 ~~~gl~L~G~~G--~GKThLa~Aia~~l~~~g-~~v~~~~~~~l-~~~lk~~-------~~~~~-~~~~l~~l~--~~dl 220 (306)
T PRK08939 155 KVKGLYLYGDFG--VGKSYLLAAIANELAKKG-VSSTLLHFPEF-IRELKNS-------ISDGS-VKEKIDAVK--EAPV 220 (306)
T ss_pred CCCeEEEECCCC--CCHHHHHHHHHHHHHHcC-CCEEEEEHHHH-HHHHHHH-------HhcCc-HHHHHHHhc--CCCE
Confidence 345799999999 999999999999886433 44455555433 1111100 11111 234444444 4679
Q ss_pred EEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 683 FFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 683 vl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
++||||-.-...+ .+.+-++..|-+.|+.. +-=.|+|||.
T Consensus 221 LiIDDiG~e~~s~-~~~~~ll~~Il~~R~~~---------~~~ti~TSNl 260 (306)
T PRK08939 221 LMLDDIGAEQMSS-WVRDEVLGVILQYRMQE---------ELPTFFTSNF 260 (306)
T ss_pred EEEecCCCccccH-HHHHHHHHHHHHHHHHC---------CCeEEEECCC
Confidence 9999996442366 55555666554555431 1226889993
No 392
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=96.50 E-value=0.0059 Score=72.87 Aligned_cols=122 Identities=13% Similarity=0.125 Sum_probs=66.3
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHH--HHHHHHH---HH--HHHhccCC
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEV--EQKLVEL---SC--HVKSYMGR 278 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~--E~rl~~l---~~--~v~~~~~~ 278 (796)
.-.+++|.|+||+|||++++.|+..+.. ...|+.++.+......-|.. +..++.= ++ .+.. ..
T Consensus 15 ~~g~vLl~G~~GtgKs~lar~l~~~~~~--------~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~--A~ 84 (589)
T TIGR02031 15 SLGGVAIRARAGTGKTALARALAEILPP--------IMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDE--AP 84 (589)
T ss_pred CcceEEEEcCCCcHHHHHHHHHHHhCCc--------CCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeee--CC
Confidence 3347889999999999999999986432 12456555432222222221 1111100 00 0111 23
Q ss_pred CEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHh-hh---c---C----CCCcEEEEEecChHHHHHh
Q 003769 279 GIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLV-FE---I---G----ESERVWIMGIASFQTYTRC 347 (796)
Q Consensus 279 ~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~-~~---~---~----~~G~l~~IGatT~~ey~k~ 347 (796)
+-||||||++.+-.. .... |-.++ .+ + | ..-.+++|+++++.+...
T Consensus 85 ~GvL~lDEi~rl~~~------------------~q~~----Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g- 141 (589)
T TIGR02031 85 RGVLYVDMANLLDDG------------------LSNR----LLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGG- 141 (589)
T ss_pred CCcEeccchhhCCHH------------------HHHH----HHHHHHcCCeEEEECCCceeecCceEEEEecCCccccC-
Confidence 468999999988654 1111 22222 11 0 0 013589999888775322
Q ss_pred hhcCccccccccce
Q 003769 348 KAGHPSLENMWKLH 361 (796)
Q Consensus 348 ~~~dpaLerrf~lq 361 (796)
.-.++|-.||.++
T Consensus 142 -~L~~~LldRf~l~ 154 (589)
T TIGR02031 142 -GLPDHLLDRLALH 154 (589)
T ss_pred -CCCHHHHHhccCe
Confidence 4567788888774
No 393
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.47 E-value=0.026 Score=61.89 Aligned_cols=109 Identities=9% Similarity=0.031 Sum_probs=69.2
Q ss_pred cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCC-ccccccccccCCCCCCCCCCchhhHHHHHHh--
Q 003769 601 KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQS-RQDDCRTKKRSRDVELGCCSYIERLGLALNE-- 677 (796)
Q Consensus 601 ~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~-~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~-- 677 (796)
++-.-.+||.|+.| .||+++|+++|+.++... .. ++... ...........+. ..+...+-.+.+.+..
T Consensus 15 ~~l~haYLf~G~eg--~gk~~~a~~~a~~l~c~~-~~----~~~~~~~p~n~~~~d~~g~--~i~vd~Ir~l~~~~~~~~ 85 (299)
T PRK07132 15 NKISHSFLLKSNYN--EDIDEKILYFLNKFNNLQ-IT----NLNEQELPANIILFDIFDK--DLSKSEFLSAINKLYFSS 85 (299)
T ss_pred CCCCeEEEEeCCCC--CCHHHHHHHHHHHHcCcC-CC----CCCCCCCCcceEEeccCCC--cCCHHHHHHHHHHhccCC
Confidence 45567899999999 999999999999998743 11 11100 0000000000000 0001112244444432
Q ss_pred ---CCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 678 ---NPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 678 ---~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
.+++||++|++|+. .. ..+|.|+..+|+ .=.+|+|||+|+.
T Consensus 86 ~~~~~~KvvII~~~e~m--~~-~a~NaLLK~LEE-----------Pp~~t~~il~~~~ 129 (299)
T PRK07132 86 FVQSQKKILIIKNIEKT--SN-SLLNALLKTIEE-----------PPKDTYFLLTTKN 129 (299)
T ss_pred cccCCceEEEEeccccc--CH-HHHHHHHHHhhC-----------CCCCeEEEEEeCC
Confidence 36889999999999 98 999999999976 2378999997753
No 394
>PRK06921 hypothetical protein; Provisional
Probab=96.46 E-value=0.0059 Score=65.79 Aligned_cols=101 Identities=14% Similarity=0.187 Sum_probs=59.1
Q ss_pred CCeEEEEecCCCCCchHHHHHHHHHHHHcCC-CCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCE
Q 003769 603 EQTWLLFLGADDHNHGKEKIAREIAKVVFGS-HSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHR 681 (796)
Q Consensus 603 ~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~-~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~ 681 (796)
...|++|.||+| +|||.||.++|..+-.. . ...+.+...+. .... + ..+ +..+...+.+. -..
T Consensus 116 ~~~~l~l~G~~G--~GKThLa~aia~~l~~~~g-~~v~y~~~~~l-~~~l---~----~~~---~~~~~~~~~~~--~~d 179 (266)
T PRK06921 116 RKNSIALLGQPG--SGKTHLLTAAANELMRKKG-VPVLYFPFVEG-FGDL---K----DDF---DLLEAKLNRMK--KVE 179 (266)
T ss_pred CCCeEEEECCCC--CcHHHHHHHHHHHHhhhcC-ceEEEEEHHHH-HHHH---H----HHH---HHHHHHHHHhc--CCC
Confidence 457999999999 99999999999988653 2 34455554321 0110 0 001 01112223333 357
Q ss_pred EEEEccccc-------CCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 682 VFFMEDLDD-------HKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 682 Vvl~deiek-------a~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
|++|||+.. + .. .....|.++++.- .. +|+. +|+|||.
T Consensus 180 lLiIDDl~~~~~g~e~~--t~-~~~~~lf~iin~R-~~--~~k~-------tIitsn~ 224 (266)
T PRK06921 180 VLFIDDLFKPVNGKPRA--TE-WQIEQMYSVLNYR-YL--NHKP-------ILISSEL 224 (266)
T ss_pred EEEEeccccccCCCccC--CH-HHHHHHHHHHHHH-HH--CCCC-------EEEECCC
Confidence 999999933 4 44 4556677777543 22 1221 5778984
No 395
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.45 E-value=0.0032 Score=58.48 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=25.8
Q ss_pred eEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeec
Q 003769 210 TVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPL 250 (796)
Q Consensus 210 ~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~ 250 (796)
++|+|+||+||||+++.||+++ |..++.+|.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~----------~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL----------GFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH----------TCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH----------CCeEEEecc
Confidence 5789999999999999999986 456666663
No 396
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.45 E-value=0.051 Score=59.37 Aligned_cols=70 Identities=20% Similarity=0.263 Sum_probs=46.9
Q ss_pred CCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCcc---
Q 003769 277 GRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPS--- 353 (796)
Q Consensus 277 ~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpa--- 353 (796)
..++|+|||||+.+-+.. .++.... +|.++ .--.+++|-+..++-..+.++..-.
T Consensus 171 ~~~iViiIDdLDR~~~~~-----------------i~~~l~~-ik~~~----~~~~i~~Il~~D~~~l~~ai~~~~~~~~ 228 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCSPEE-----------------IVELLEA-IKLLL----DFPNIIFILAFDPEILEKAIEKNYGEGF 228 (325)
T ss_pred CceEEEEEcchhcCCcHH-----------------HHHHHHH-HHHhc----CCCCeEEEEEecHHHHHHHHHhhcCccc
Confidence 568999999999885541 4444444 55666 2356888888888777777665432
Q ss_pred --------ccccccceecccCCCC
Q 003769 354 --------LENMWKLHPFTIPVGS 369 (796)
Q Consensus 354 --------Lerrf~lq~V~vp~~~ 369 (796)
|++.++ .++.+|.++
T Consensus 229 ~~~~~~~yLeKiiq-~~~~lP~~~ 251 (325)
T PF07693_consen 229 DEIDGREYLEKIIQ-VPFSLPPPS 251 (325)
T ss_pred ccccHHHHHHhhcC-eEEEeCCCC
Confidence 667765 367777654
No 397
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.45 E-value=0.013 Score=65.34 Aligned_cols=102 Identities=19% Similarity=0.296 Sum_probs=63.5
Q ss_pred CCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCC-CCccccccccccCCCCCCCCCCchhhHHHHHHhCCC
Q 003769 602 KEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSS-QSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPH 680 (796)
Q Consensus 602 ~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms-~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~ 680 (796)
++.+.++|+||+| .|||++.++|...+-......++.+.-. |+........-.....+....+|...|..++|.+|.
T Consensus 120 ~~~g~ili~G~tG--SGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd 197 (343)
T TIGR01420 120 RPRGLILVTGPTG--SGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPD 197 (343)
T ss_pred hcCcEEEEECCCC--CCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCC
Confidence 4568999999999 9999999999988742211445555322 331101000000011222233566788888998885
Q ss_pred EEEEEcccccCCCChHHHHHHHHHHHHcceE
Q 003769 681 RVFFMEDLDDHKVDSCYCQKGLKQAIENGCI 711 (796)
Q Consensus 681 ~Vvl~deieka~~~~~~v~~~l~q~~d~G~l 711 (796)
||++|||- |+ ......+++...|.+
T Consensus 198 -~i~vgEir----d~-~~~~~~l~aa~tGh~ 222 (343)
T TIGR01420 198 -VILIGEMR----DL-ETVELALTAAETGHL 222 (343)
T ss_pred -EEEEeCCC----CH-HHHHHHHHHHHcCCc
Confidence 67799995 55 666677777766644
No 398
>PLN02199 shikimate kinase
Probab=96.43 E-value=0.012 Score=64.06 Aligned_cols=53 Identities=15% Similarity=0.030 Sum_probs=42.8
Q ss_pred CCCCC-ChHHHHHHHHHHhh--ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEee
Q 003769 187 KSLGR-DSDDVMSVLNALIN--KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLP 249 (796)
Q Consensus 187 g~ldp-r~~ei~~vi~~L~r--~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~ 249 (796)
|.+.| .++.+....+.+.. ..+|++|+|.+|+|||++.+.||+.+ |..|+..|
T Consensus 79 ~~~~~~de~~Lk~~a~~i~~~l~~~~I~LIG~~GSGKSTVgr~LA~~L----------g~~fIDtD 134 (303)
T PLN02199 79 GSVYPFDEDILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVL----------GYTFFDCD 134 (303)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh----------CCCEEehH
Confidence 45557 56667777777766 67899999999999999999999875 56788777
No 399
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.39 E-value=0.0077 Score=63.84 Aligned_cols=76 Identities=11% Similarity=0.109 Sum_probs=43.5
Q ss_pred eEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeeccccccc---chHHHHHHHHHHH-HHHHhccCCCEEEEEc
Q 003769 210 TVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQ---SKGEVEQKLVELS-CHVKSYMGRGIVLYLG 285 (796)
Q Consensus 210 ~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~---~rge~E~rl~~l~-~~v~~~~~~~~ILfID 285 (796)
++|+|.||+|||++++.|+.++... +..++.++...+... +....+..+++.. ..++.....+.++++|
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~-------~~~v~~i~~D~lr~~~~~~~~~~e~~~~~~~~~~i~~~l~~~~~VI~D 74 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEK-------NIDVIILGTDLIRESFPVWKEKYEEFIRDSTLYLIKTALKNKYSVIVD 74 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc-------CCceEEEccHHHHHHhHHhhHHhHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 5889999999999999999988643 345555554334221 2223333333221 1222211335668888
Q ss_pred chhhhhh
Q 003769 286 DLKWVAE 292 (796)
Q Consensus 286 Elh~l~~ 292 (796)
...+.-+
T Consensus 75 ~~~~~~~ 81 (249)
T TIGR03574 75 DTNYYNS 81 (249)
T ss_pred ccchHHH
Confidence 8655443
No 400
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.39 E-value=0.0018 Score=65.58 Aligned_cols=63 Identities=16% Similarity=0.287 Sum_probs=40.2
Q ss_pred ceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEcchh
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLGDLK 288 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfIDElh 288 (796)
+++++|+||+||||.++.||+++ .+..+|.+.+ +|+...++ .++..+++.+..++- |+.|++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~------------~i~hlstgd~---~r~~~~~~-t~lg~~~k~~i~~g~-lv~d~i~ 64 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL------------GLPHLDTGDI---LRAAIAER-TELGEEIKKYIDKGE-LVPDEIV 64 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh------------CCcEEcHhHH---hHhhhccC-ChHHHHHHHHHHcCC-ccchHHH
Confidence 68999999999999999999973 3555664443 44444444 444455444221222 6666665
No 401
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.38 E-value=0.052 Score=59.61 Aligned_cols=90 Identities=14% Similarity=0.169 Sum_probs=50.4
Q ss_pred HHHHHHHhh-ccCce-EEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHh
Q 003769 197 MSVLNALIN-KKRNT-VIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKS 274 (796)
Q Consensus 197 ~~vi~~L~r-~k~n~-vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~ 274 (796)
+.+.+.+.. +-.++ ++.||+|+|||++++.+|+.+.....+..- ..++.+... ..+.. ..+ .++++.+.+..
T Consensus 14 ~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h--~D~~~~~~~--~~~~i-~v~-~ir~~~~~~~~ 87 (313)
T PRK05564 14 NRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREY--VDIIEFKPI--NKKSI-GVD-DIRNIIEEVNK 87 (313)
T ss_pred HHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCC--CCeEEeccc--cCCCC-CHH-HHHHHHHHHhc
Confidence 334444554 44555 678999999999999999987543222111 122222210 01100 011 25666665543
Q ss_pred cc--CCCEEEEEcchhhhhh
Q 003769 275 YM--GRGIVLYLGDLKWVAE 292 (796)
Q Consensus 275 ~~--~~~~ILfIDElh~l~~ 292 (796)
.. ++.-|++||+.+.+..
T Consensus 88 ~p~~~~~kv~iI~~ad~m~~ 107 (313)
T PRK05564 88 KPYEGDKKVIIIYNSEKMTE 107 (313)
T ss_pred CcccCCceEEEEechhhcCH
Confidence 21 4557999999987754
No 402
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=96.35 E-value=0.0023 Score=78.38 Aligned_cols=130 Identities=13% Similarity=-0.001 Sum_probs=71.0
Q ss_pred ceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc-c--chHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN-Q--SKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a-~--~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
|++|+|+||||||.+++.+.+--.++. .-.|..+..+++.+... . ..|++-.+-. ..+ . ..+-+||||
T Consensus 494 hVLLvGDPGTGKSqLAr~Ih~lspR~~---ytsG~~~s~vgLTa~~~~~d~~tG~~~le~G---aLv-l--AdgGtL~ID 564 (915)
T PTZ00111 494 NVLLCGDPGTAKSQLLHYTHLLSPRSI---YTSGKSSSSVGLTASIKFNESDNGRAMIQPG---AVV-L--ANGGVCCID 564 (915)
T ss_pred eEEEeCCCCccHHHHHHHHHHhCCccc---cCCCCCCccccccchhhhcccccCcccccCC---cEE-E--cCCCeEEec
Confidence 889999999999999999987432221 01122333333333221 0 0121110000 011 1 234699999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhh-c-----C----CCCcEEEEEecChHHHH--------Hh
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFE-I-----G----ESERVWIMGIASFQTYT--------RC 347 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~-~-----~----~~G~l~~IGatT~~ey~--------k~ 347 (796)
|+..+-..- ..+. +.+|-++ + | -.-+..+|+|+++..-+ .-
T Consensus 565 Eidkms~~~-------------------Q~aL--lEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~en 623 (915)
T PTZ00111 565 ELDKCHNES-------------------RLSL--YEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIEN 623 (915)
T ss_pred chhhCCHHH-------------------HHHH--HHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccc
Confidence 999875430 1111 1122111 0 1 13468999999986332 34
Q ss_pred hhcCccccccccceecccCCC
Q 003769 348 KAGHPSLENMWKLHPFTIPVG 368 (796)
Q Consensus 348 ~~~dpaLerrf~lq~V~vp~~ 368 (796)
+...|+|-.||+|.-+..+.+
T Consensus 624 i~Lp~~LLSRFDLIf~l~D~~ 644 (915)
T PTZ00111 624 INISPSLFTRFDLIYLVLDHI 644 (915)
T ss_pred cCCChHHhhhhcEEEEecCCC
Confidence 566788889999888877554
No 403
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.34 E-value=0.014 Score=62.79 Aligned_cols=99 Identities=14% Similarity=0.179 Sum_probs=67.3
Q ss_pred CCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCC-CCccccccccccCCCCCCCCCCchhhHHHHHHhCCC
Q 003769 602 KEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSS-QSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPH 680 (796)
Q Consensus 602 ~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms-~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~ 680 (796)
++.+.++|.|||| .|||++.++|...+.... ..++.+.-. |+......... .....+.+|.+-+..++|.+|.
T Consensus 78 ~~~GlilisG~tG--SGKTT~l~all~~i~~~~-~~iitiEdp~E~~~~~~~q~~---v~~~~~~~~~~~l~~~lR~~PD 151 (264)
T cd01129 78 KPHGIILVTGPTG--SGKTTTLYSALSELNTPE-KNIITVEDPVEYQIPGINQVQ---VNEKAGLTFARGLRAILRQDPD 151 (264)
T ss_pred cCCCEEEEECCCC--CcHHHHHHHHHhhhCCCC-CeEEEECCCceecCCCceEEE---eCCcCCcCHHHHHHHHhccCCC
Confidence 4568999999999 999999999988886544 567777433 33111000000 0112234677888889988885
Q ss_pred EEEEEcccccCCCChHHHHHHHHHHHHcceEe
Q 003769 681 RVFFMEDLDDHKVDSCYCQKGLKQAIENGCIA 712 (796)
Q Consensus 681 ~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~ 712 (796)
||+++||-.. +....++++..+|.+.
T Consensus 152 -~i~vgEiR~~-----e~a~~~~~aa~tGh~v 177 (264)
T cd01129 152 -IIMVGEIRDA-----ETAEIAVQAALTGHLV 177 (264)
T ss_pred -EEEeccCCCH-----HHHHHHHHHHHcCCcE
Confidence 6678999866 6666788888888653
No 404
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=96.33 E-value=0.017 Score=66.66 Aligned_cols=55 Identities=18% Similarity=0.208 Sum_probs=39.2
Q ss_pred ChHHHHHHHHHHhh---ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccc
Q 003769 192 DSDDVMSVLNALIN---KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSF 253 (796)
Q Consensus 192 r~~ei~~vi~~L~r---~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l 253 (796)
+...+.++.+.+.+ ....+++.||+|||||.+++.+...-.. .+..|+.+|.+.+
T Consensus 143 ~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~-------~~~~~i~i~c~~~ 200 (469)
T PRK10923 143 EAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPR-------AKAPFIALNMAAI 200 (469)
T ss_pred cCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCC-------CCCCeEeeeCCCC
Confidence 44555555555443 6667888999999999999988774322 3567999998766
No 405
>PRK08118 topology modulation protein; Reviewed
Probab=96.30 E-value=0.0068 Score=60.66 Aligned_cols=32 Identities=9% Similarity=0.224 Sum_probs=26.7
Q ss_pred CceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEee
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLP 249 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~ 249 (796)
..++++|+||+||||+++.|+.++ +..++++|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l----------~~~~~~lD 33 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL----------NIPVHHLD 33 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh----------CCCceecc
Confidence 458899999999999999999876 35566666
No 406
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.28 E-value=0.0077 Score=63.13 Aligned_cols=87 Identities=9% Similarity=0.116 Sum_probs=50.9
Q ss_pred CCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCcc---ccccccccCCCCCCCCCCchhhHHHHHH--
Q 003769 602 KEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQ---DDCRTKKRSRDVELGCCSYIERLGLALN-- 676 (796)
Q Consensus 602 ~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~---~~~~~~k~~~~~~~~~~~~~~~L~eavr-- 676 (796)
+...++||+|++| +|||.+|+.|+ .. .-++..|++...- +...+... .+...-..+.+.| +.+.
T Consensus 10 ~~~~~~liyG~~G--~GKtt~a~~~~-----~~-~~~~~~d~~~~~l~g~~~~~v~~~--d~~~~~~~~~d~l-~~~~~~ 78 (220)
T TIGR01618 10 RIPNMYLIYGKPG--TGKTSTIKYLP-----GK-TLVLSFDMSSKVLIGDENVDIADH--DDMPPIQAMVEFY-VMQNIQ 78 (220)
T ss_pred CCCcEEEEECCCC--CCHHHHHHhcC-----CC-CEEEeccccchhccCCCCCceeec--CCCCCHHHHHHHH-HHHHhc
Confidence 4347899999999 99999999986 22 4577788863210 00111000 0000001122333 2333
Q ss_pred hCCCEEEEEcccccCCCChHHHHHHH
Q 003769 677 ENPHRVFFMEDLDDHKVDSCYCQKGL 702 (796)
Q Consensus 677 ~~P~~Vvl~deieka~~~~~~v~~~l 702 (796)
.++|.+|++|.|+++ -. .++..+
T Consensus 79 ~~~ydtVVIDsI~~l--~~-~~~~~~ 101 (220)
T TIGR01618 79 AVKYDNIVIDNISAL--QN-LWLENI 101 (220)
T ss_pred cccCCEEEEecHHHH--HH-HHHHHH
Confidence 366999999999999 66 554444
No 407
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.26 E-value=0.0094 Score=65.75 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=32.5
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCC-CCCCCceEEEeec
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVP-GDLRYAQFISLPL 250 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp-~~L~~~~v~~l~~ 250 (796)
..+.++++||||+||||++-|+|+.+-. ++| -.+.+-.+|++.+
T Consensus 64 aGrgiLi~GppgTGKTAlA~gIa~eLG~-dvPF~~isgsEiYS~E~ 108 (450)
T COG1224 64 AGRGILIVGPPGTGKTALAMGIARELGE-DVPFVAISGSEIYSLEV 108 (450)
T ss_pred cccEEEEECCCCCcHHHHHHHHHHHhCC-CCCceeeccceeeeecc
Confidence 5688999999999999999999998743 355 3444444554443
No 408
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.26 E-value=0.0081 Score=66.89 Aligned_cols=38 Identities=16% Similarity=0.328 Sum_probs=28.5
Q ss_pred HHHH-HHHHHHhh-ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 194 DDVM-SVLNALIN-KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 194 ~ei~-~vi~~L~r-~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
+++. .++-.+.. ...+++|.|+||+|||+++++++.-+
T Consensus 10 ~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 10 DEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred HHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 3443 33344444 56789999999999999999999766
No 409
>smart00350 MCM minichromosome maintenance proteins.
Probab=96.25 E-value=0.0024 Score=74.89 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=21.1
Q ss_pred ceEEEcCCcccHHHHHHHHHHHH
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri 231 (796)
|++|+|+||+|||.+++.++...
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~ 260 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTA 260 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHc
Confidence 89999999999999999998753
No 410
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.24 E-value=0.014 Score=65.45 Aligned_cols=102 Identities=16% Similarity=0.214 Sum_probs=65.2
Q ss_pred CCCeEEEEecCCCCCchHHHHHHHHHHHHc---CCCCCceEEe-cCCCCcccccccc-cc--CCCCCCCCCCchhhHHHH
Q 003769 602 KEQTWLLFLGADDHNHGKEKIAREIAKVVF---GSHSNNFTNL-SSSQSRQDDCRTK-KR--SRDVELGCCSYIERLGLA 674 (796)
Q Consensus 602 ~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~f---g~~~~~~i~~-dms~~~~~~~~~~-k~--~~~~~~~~~~~~~~L~ea 674 (796)
++.+-++++|||| .|||++.++|.+++- +.. ..++.+ |--|+.-...... .. ....+-...+|...|-.+
T Consensus 132 ~~~glilI~GpTG--SGKTTtL~aLl~~i~~~~~~~-~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~a 208 (358)
T TIGR02524 132 PQEGIVFITGATG--SGKSTLLAAIIRELAEAPDSH-RKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNA 208 (358)
T ss_pred ccCCEEEEECCCC--CCHHHHHHHHHHHHhhcCCCC-cEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHH
Confidence 3678999999999 999999999999983 222 345444 2223311110000 00 000111123566788899
Q ss_pred HHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEe
Q 003769 675 LNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIA 712 (796)
Q Consensus 675 vr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~ 712 (796)
+|.+|+ +|++.||... +.....+++...|.+.
T Consensus 209 LR~~Pd-~i~vGEiRd~-----et~~~al~aa~tGh~v 240 (358)
T TIGR02524 209 LRRKPH-AILVGEARDA-----ETISAALEAALTGHPV 240 (358)
T ss_pred hccCCC-EEeeeeeCCH-----HHHHHHHHHHHcCCcE
Confidence 999999 7888887655 7777788898888654
No 411
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.24 E-value=0.0099 Score=58.49 Aligned_cols=26 Identities=23% Similarity=0.172 Sum_probs=23.5
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
.+.+++|+|+||+|||++++.||+++
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 35688999999999999999999986
No 412
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.0079 Score=70.99 Aligned_cols=94 Identities=21% Similarity=0.234 Sum_probs=65.9
Q ss_pred CCCcchHHHHHHHHHHHhhc---------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccc
Q 003769 581 VPWQKEIMPEIARTILECRS---------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDC 651 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs---------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~ 651 (796)
|-|.+||..++.+.|--.+. .=|.||+ +.||+| +|||-|||+.|-.- + -.|..+..|++ -|-+
T Consensus 152 VAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvl-LvGpPG--TGKTLLAkAvAgEA-~---VPFf~iSGS~F-Vemf 223 (596)
T COG0465 152 VAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVL-LVGPPG--TGKTLLAKAVAGEA-G---VPFFSISGSDF-VEMF 223 (596)
T ss_pred hcCcHHHHHHHHHHHHHHhCchhhHhccccccccee-EecCCC--CCcHHHHHHHhccc-C---CCceeccchhh-hhhh
Confidence 77888888888888877665 2366776 899999 99999999999554 2 34655555554 2221
Q ss_pred cccccCCCCCCCCCCchhhHHHHHHhCCCEEEEEcccccC
Q 003769 652 RTKKRSRDVELGCCSYIERLGLALNENPHRVFFMEDLDDH 691 (796)
Q Consensus 652 ~~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vvl~deieka 691 (796)
+ .+|+..+-.|.+.-++|--++|++||||..
T Consensus 224 --------V-GvGAsRVRdLF~qAkk~aP~IIFIDEiDAv 254 (596)
T COG0465 224 --------V-GVGASRVRDLFEQAKKNAPCIIFIDEIDAV 254 (596)
T ss_pred --------c-CCCcHHHHHHHHHhhccCCCeEEEehhhhc
Confidence 1 245556655666556555599999999965
No 413
>PRK13949 shikimate kinase; Provisional
Probab=96.21 E-value=0.0082 Score=60.19 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=27.5
Q ss_pred CceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEee
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLP 249 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~ 249 (796)
++++|+|+||+|||++++.||.++ +..++.+|
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l----------~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL----------GLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc----------CCCeeccc
Confidence 579999999999999999999976 35677777
No 414
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.20 E-value=0.013 Score=66.70 Aligned_cols=25 Identities=8% Similarity=0.021 Sum_probs=23.6
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~r 230 (796)
+..|+|++||+|||||+++.+|...
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHH
Confidence 7899999999999999999998877
No 415
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.20 E-value=0.017 Score=59.27 Aligned_cols=110 Identities=13% Similarity=0.238 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhh-ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHH-------
Q 003769 193 SDDVMSVLNALIN-KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQK------- 264 (796)
Q Consensus 193 ~~ei~~vi~~L~r-~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~r------- 264 (796)
+++=+..++.+.. ..+-.+|.|+||||||+++..++..+... +.+|+-+ +...+-..++.++
T Consensus 3 ~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~-------g~~v~~~---apT~~Aa~~L~~~~~~~a~T 72 (196)
T PF13604_consen 3 NEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAA-------GKRVIGL---APTNKAAKELREKTGIEAQT 72 (196)
T ss_dssp -HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHT-------T--EEEE---ESSHHHHHHHHHHHTS-EEE
T ss_pred CHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhC-------CCeEEEE---CCcHHHHHHHHHhhCcchhh
Q ss_pred HHHHHHHHHh--------ccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEE
Q 003769 265 LVELSCHVKS--------YMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIM 336 (796)
Q Consensus 265 l~~l~~~v~~--------~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~I 336 (796)
+..++..... . ...-+|+|||..++-.. .+..... +-.-. ..+|.++
T Consensus 73 i~~~l~~~~~~~~~~~~~~-~~~~vliVDEasmv~~~------------------~~~~ll~-~~~~~-----~~klilv 127 (196)
T PF13604_consen 73 IHSFLYRIPNGDDEGRPEL-PKKDVLIVDEASMVDSR------------------QLARLLR-LAKKS-----GAKLILV 127 (196)
T ss_dssp HHHHTTEECCEECCSSCC--TSTSEEEESSGGG-BHH------------------HHHHHHH-HS-T------T-EEEEE
T ss_pred HHHHHhcCCcccccccccC-CcccEEEEecccccCHH------------------HHHHHHH-HHHhc-----CCEEEEE
Q ss_pred E
Q 003769 337 G 337 (796)
Q Consensus 337 G 337 (796)
|
T Consensus 128 G 128 (196)
T PF13604_consen 128 G 128 (196)
T ss_dssp E
T ss_pred C
No 416
>PRK09183 transposase/IS protein; Provisional
Probab=96.18 E-value=0.0084 Score=64.31 Aligned_cols=90 Identities=11% Similarity=0.046 Sum_probs=52.6
Q ss_pred eEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCEEEE
Q 003769 605 TWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHRVFF 684 (796)
Q Consensus 605 ~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vvl 684 (796)
..++|.||+| +|||.||.+|+...-... .....+++.+.. ...... .....+ +...... -....|++
T Consensus 103 ~~v~l~Gp~G--tGKThLa~al~~~a~~~G-~~v~~~~~~~l~-~~l~~a-------~~~~~~-~~~~~~~-~~~~dlLi 169 (259)
T PRK09183 103 ENIVLLGPSG--VGKTHLAIALGYEAVRAG-IKVRFTTAADLL-LQLSTA-------QRQGRY-KTTLQRG-VMAPRLLI 169 (259)
T ss_pred CeEEEEeCCC--CCHHHHHHHHHHHHHHcC-CeEEEEeHHHHH-HHHHHH-------HHCCcH-HHHHHHH-hcCCCEEE
Confidence 4677999999 999999999987653222 234444443221 010000 000111 1111111 13457999
Q ss_pred EcccccCCCChHHHHHHHHHHHHc
Q 003769 685 MEDLDDHKVDSCYCQKGLKQAIEN 708 (796)
Q Consensus 685 ~deieka~~~~~~v~~~l~q~~d~ 708 (796)
|||+.....+. +..+.|+++++.
T Consensus 170 iDdlg~~~~~~-~~~~~lf~li~~ 192 (259)
T PRK09183 170 IDEIGYLPFSQ-EEANLFFQVIAK 192 (259)
T ss_pred EcccccCCCCh-HHHHHHHHHHHH
Confidence 99998755577 777889999876
No 417
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.16 E-value=0.025 Score=61.03 Aligned_cols=81 Identities=12% Similarity=0.161 Sum_probs=57.6
Q ss_pred HHHHHHHHHhhccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHh
Q 003769 195 DVMSVLNALINKKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKS 274 (796)
Q Consensus 195 ei~~vi~~L~r~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~ 274 (796)
-|-|+..+|...+.|.+|||.+|+||.++++ ||.-| .+.+++.+.+.. .-...+|.+-||.++..+--
T Consensus 19 hi~ri~RvL~~~~Gh~LLvG~~GsGr~sl~r-Laa~i---------~~~~~~~i~~~~--~y~~~~f~~dLk~~~~~ag~ 86 (268)
T PF12780_consen 19 HIARISRVLSQPRGHALLVGVGGSGRQSLAR-LAAFI---------CGYEVFQIEITK--GYSIKDFKEDLKKALQKAGI 86 (268)
T ss_dssp HHHHHHHHHCSTTEEEEEECTTTSCHHHHHH-HHHHH---------TTEEEE-TTTST--TTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCCeEEecCCCccHHHHHH-HHHHH---------hccceEEEEeeC--CcCHHHHHHHHHHHHHHHhc
Confidence 3556667776667899999999999999999 44444 367888887543 12356788888888877654
Q ss_pred ccCCCEEEEEcchh
Q 003769 275 YMGRGIVLYLGDLK 288 (796)
Q Consensus 275 ~~~~~~ILfIDElh 288 (796)
. +.+++++|.|-+
T Consensus 87 ~-~~~~vfll~d~q 99 (268)
T PF12780_consen 87 K-GKPTVFLLTDSQ 99 (268)
T ss_dssp S--S-EEEEEECCC
T ss_pred c-CCCeEEEecCcc
Confidence 3 678999998854
No 418
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.16 E-value=0.033 Score=62.86 Aligned_cols=79 Identities=6% Similarity=0.052 Sum_probs=50.4
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc--cchH--------H----HHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN--QSKG--------E----VEQKLVELSCH 271 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a--~~rg--------e----~E~rl~~l~~~ 271 (796)
...-++|.|+||+|||+++..++..+.+. +.+++.++...-.. +.|. + .+..+.++++.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~-------g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~ 153 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKR-------GGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILAS 153 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhc-------CCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHH
Confidence 45566678999999999999999887653 34565555321100 0000 0 12234566666
Q ss_pred HHhccCCCEEEEEcchhhhhhh
Q 003769 272 VKSYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 272 v~~~~~~~~ILfIDElh~l~~~ 293 (796)
++. .++-+|+||+|+++...
T Consensus 154 i~~--~~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 154 IEE--LKPDLVIIDSIQTVYSS 173 (372)
T ss_pred HHh--cCCcEEEEcchHHhhcc
Confidence 665 46789999999999643
No 419
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.13 E-value=0.0079 Score=60.92 Aligned_cols=91 Identities=18% Similarity=0.214 Sum_probs=58.3
Q ss_pred CeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCEEE
Q 003769 604 QTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHRVF 683 (796)
Q Consensus 604 ~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vv 683 (796)
..+++|.||+| +|||.||.+++..+.... ....-+++++. .+.... + +. .+-.+.+...+.+ ..|+
T Consensus 47 ~~~l~l~G~~G--~GKThLa~ai~~~~~~~g-~~v~f~~~~~L-~~~l~~-----~--~~-~~~~~~~~~~l~~--~dlL 112 (178)
T PF01695_consen 47 GENLILYGPPG--TGKTHLAVAIANEAIRKG-YSVLFITASDL-LDELKQ-----S--RS-DGSYEELLKRLKR--VDLL 112 (178)
T ss_dssp --EEEEEESTT--SSHHHHHHHHHHHHHHTT---EEEEEHHHH-HHHHHC-----C--HC-CTTHCHHHHHHHT--SSCE
T ss_pred CeEEEEEhhHh--HHHHHHHHHHHHHhccCC-cceeEeecCce-eccccc-----c--cc-ccchhhhcCcccc--ccEe
Confidence 35899999999 999999999998776654 55566666533 111111 1 11 1122456666664 4788
Q ss_pred EEcccccCCCChHHHHHHHHHHHHcc
Q 003769 684 FMEDLDDHKVDSCYCQKGLKQAIENG 709 (796)
Q Consensus 684 l~deieka~~~~~~v~~~l~q~~d~G 709 (796)
+|||+-...... ...+.|.++|+.-
T Consensus 113 ilDDlG~~~~~~-~~~~~l~~ii~~R 137 (178)
T PF01695_consen 113 ILDDLGYEPLSE-WEAELLFEIIDER 137 (178)
T ss_dssp EEETCTSS---H-HHHHCTHHHHHHH
T ss_pred cccccceeeecc-cccccchhhhhHh
Confidence 899998765567 7888999999774
No 420
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.11 E-value=0.051 Score=57.79 Aligned_cols=94 Identities=18% Similarity=0.214 Sum_probs=59.7
Q ss_pred ChHHHHHHHHHHhh-ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccc-------------cc--
Q 003769 192 DSDDVMSVLNALIN-KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSF-------------RN-- 255 (796)
Q Consensus 192 r~~ei~~vi~~L~r-~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l-------------~a-- 255 (796)
...+....+.-..+ ...-..++|+-|+|||.+++++..-...+++ -++.+|--.+ .+
T Consensus 35 ~h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~-------~~v~i~~~~~s~~~~~~ai~~~l~~~p 107 (269)
T COG3267 35 DHNEALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNEDQV-------AVVVIDKPTLSDATLLEAIVADLESQP 107 (269)
T ss_pred hhhHHHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCCCce-------EEEEecCcchhHHHHHHHHHHHhccCc
Confidence 34444444444444 5556778899999999999977665554432 1234442111 11
Q ss_pred --cchHHHHHHHHHHHHHHHhccCCCEEEEEcchhhhhhh
Q 003769 256 --QSKGEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 256 --~~rge~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~ 293 (796)
....-.|++-+.|..+++.. ..++++++||.|-+...
T Consensus 108 ~~~~~~~~e~~~~~L~al~~~g-~r~v~l~vdEah~L~~~ 146 (269)
T COG3267 108 KVNVNAVLEQIDRELAALVKKG-KRPVVLMVDEAHDLNDS 146 (269)
T ss_pred cchhHHHHHHHHHHHHHHHHhC-CCCeEEeehhHhhhChh
Confidence 12335677777788888874 45699999999998754
No 421
>PRK13947 shikimate kinase; Provisional
Probab=96.10 E-value=0.0053 Score=60.76 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=27.9
Q ss_pred CceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEee
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLP 249 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~ 249 (796)
+|++|+|+||+|||++++.||.++ +.+|+..|
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~l----------g~~~id~d 33 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTL----------SFGFIDTD 33 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh----------CCCEEECc
Confidence 479999999999999999999986 46677766
No 422
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.09 E-value=0.0074 Score=70.84 Aligned_cols=48 Identities=17% Similarity=0.272 Sum_probs=41.1
Q ss_pred CCCcchHHHHHHHHHHHhhc--cCCCeEEEEecCCCCCchHHHHHHHHHHHH
Q 003769 581 VPWQKEIMPEIARTILECRS--KKEQTWLLFLGADDHNHGKEKIAREIAKVV 630 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs--~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~ 630 (796)
++|+++++..|.+-++.+.. ..+...|+|+||+| +|||+||+.||+.+
T Consensus 78 ~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG--~GKSsLa~~la~~l 127 (644)
T PRK15455 78 FYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVG--GGKSSLAERLKSLM 127 (644)
T ss_pred ccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCC--CCchHHHHHHHHHH
Confidence 58999999999998866544 33445899999999 99999999999987
No 423
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.07 E-value=0.055 Score=64.98 Aligned_cols=125 Identities=11% Similarity=0.054 Sum_probs=69.6
Q ss_pred HHHHHhh-ccCc-eEEEcCCcccHHHHHHHHHHHHHcCCCC---------------CCCCCceEEEeecccccccchHHH
Q 003769 199 VLNALIN-KKRN-TVIVGGNLAAIEGVIRGIIDQFERGQVP---------------GDLRYAQFISLPLFSFRNQSKGEV 261 (796)
Q Consensus 199 vi~~L~r-~k~n-~vLvGepGvGKTaiv~~la~ri~~~~vp---------------~~L~~~~v~~l~~~~l~a~~rge~ 261 (796)
+...+.. +-.+ .+|.||+|+|||++++.+|..+...... +......++.+|.+.- ...
T Consensus 29 L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~~--~~v--- 103 (614)
T PRK14971 29 LKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAASN--NSV--- 103 (614)
T ss_pred HHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEeccccc--CCH---
Confidence 3344443 4445 5788999999999999999988522100 1112344566654321 112
Q ss_pred HHHHHHHHHHHHhcc--CCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEec
Q 003769 262 EQKLVELSCHVKSYM--GRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIA 339 (796)
Q Consensus 262 E~rl~~l~~~v~~~~--~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGat 339 (796)
.-++++++.+.... ++.-|++|||+|.+... +.|. |...+... .+...+|.+|
T Consensus 104 -d~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~---------------------a~na-LLK~LEep--p~~tifIL~t 158 (614)
T PRK14971 104 -DDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQA---------------------AFNA-FLKTLEEP--PSYAIFILAT 158 (614)
T ss_pred -HHHHHHHHHHhhCcccCCcEEEEEECcccCCHH---------------------HHHH-HHHHHhCC--CCCeEEEEEe
Confidence 23555555554321 34568999999988543 3333 44444211 3557778777
Q ss_pred ChHHHHHhhhcCccccccc
Q 003769 340 SFQTYTRCKAGHPSLENMW 358 (796)
Q Consensus 340 T~~ey~k~~~~dpaLerrf 358 (796)
|.. . ..-|+|.+|-
T Consensus 159 t~~--~---kIl~tI~SRc 172 (614)
T PRK14971 159 TEK--H---KILPTILSRC 172 (614)
T ss_pred CCc--h---hchHHHHhhh
Confidence 632 2 2335666664
No 424
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.06 E-value=0.021 Score=52.53 Aligned_cols=26 Identities=8% Similarity=-0.096 Sum_probs=22.9
Q ss_pred CceEEEcCCcccHHHHHHHHHHHHHc
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQFER 233 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri~~ 233 (796)
+|.++.|++|+|||.++-.++.+...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHh
Confidence 47899999999999999998888764
No 425
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=96.05 E-value=0.03 Score=64.32 Aligned_cols=88 Identities=14% Similarity=0.122 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhh---ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHH---
Q 003769 194 DDVMSVLNALIN---KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVE--- 267 (796)
Q Consensus 194 ~ei~~vi~~L~r---~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~--- 267 (796)
..++.+.+.+.+ ...++++.|++|+||+++++.+...-. -.+..|+.+|...+-. ..++..|-.
T Consensus 150 ~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~-------~~~~~~~~i~c~~~~~---~~~~~~lfg~~~ 219 (457)
T PRK11361 150 PAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSR-------RAKGPFIKVNCAALPE---SLLESELFGHEK 219 (457)
T ss_pred HHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCC-------CCCCCeEEEECCCCCH---HHHHHHhcCCCC
Confidence 344444444443 667888899999999999999866321 1346789999876532 111111100
Q ss_pred -H--------HHHHHhccCCCEEEEEcchhhhhhh
Q 003769 268 -L--------SCHVKSYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 268 -l--------~~~v~~~~~~~~ILfIDElh~l~~~ 293 (796)
. ...+.. ..+-+|||||++.|-..
T Consensus 220 ~~~~~~~~~~~g~~~~--a~~gtl~ld~i~~l~~~ 252 (457)
T PRK11361 220 GAFTGAQTLRQGLFER--ANEGTLLLDEIGEMPLV 252 (457)
T ss_pred CCCCCCCCCCCCceEE--CCCCEEEEechhhCCHH
Confidence 0 001112 23457999999988654
No 426
>PRK06217 hypothetical protein; Validated
Probab=96.04 E-value=0.014 Score=58.95 Aligned_cols=54 Identities=11% Similarity=0.123 Sum_probs=37.9
Q ss_pred ceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc-------cchHHHHHHHHHHHHHHHh
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN-------QSKGEVEQKLVELSCHVKS 274 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a-------~~rge~E~rl~~l~~~v~~ 274 (796)
+++|+|.||+||||+++.|+.++ |..++++| .+.- ..++..+.++..+.+.+..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l----------~~~~~~~D--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL----------DIPHLDTD--DYFWLPTDPPFTTKRPPEERLRLLLEDLRP 63 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc----------CCcEEEcC--ceeeccCCCCccccCCHHHHHHHHHHHHhc
Confidence 58999999999999999999875 34566666 2321 1234556677766776653
No 427
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.04 E-value=0.062 Score=59.64 Aligned_cols=29 Identities=3% Similarity=-0.061 Sum_probs=24.1
Q ss_pred ccCce-EEEcCCcccHHHHHHHHHHHHHcC
Q 003769 206 KKRNT-VIVGGNLAAIEGVIRGIIDQFERG 234 (796)
Q Consensus 206 ~k~n~-vLvGepGvGKTaiv~~la~ri~~~ 234 (796)
+-.+. +|.||+|+||+++++.+|+.+...
T Consensus 26 ~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~ 55 (329)
T PRK08058 26 RLSHAYLFEGAKGTGKKATALWLAKSLFCL 55 (329)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHCCC
Confidence 44555 788999999999999999988643
No 428
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.02 E-value=0.0085 Score=64.13 Aligned_cols=100 Identities=14% Similarity=0.216 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHH--HcCCCCCceEEecCCCCccccc---cccccCCCC
Q 003769 586 EIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKV--VFGSHSNNFTNLSSSQSRQDDC---RTKKRSRDV 660 (796)
Q Consensus 586 ~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~--~fg~~~~~~i~~dms~~~~~~~---~~~k~~~~~ 660 (796)
.-+..|.+.+...+ .+...+.+.|+.| +|||.||+++++. +-... +..+-++.+....... .+.+..+..
T Consensus 3 ~~~~~l~~~L~~~~--~~~~~v~I~G~~G--~GKT~LA~~~~~~~~~~~~f-~~v~wv~~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 3 KEIEKLKDWLLDNS--NEVRVVAIVGMGG--IGKTTLARQVARDLRIKNRF-DGVIWVSLSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp HHHHHHHHHHHTTT--TSSEEEEEEESTT--SSHHHHHHHHHCHHHHCCCC-TEEEEEEEES-SCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhhCCC--CCeEEEEEEcCCc--CCcceeeeeccccccccccc-cccccccccccccccccccccccccccc
Confidence 34566666666444 6778999999999 9999999999977 43444 4456666663322111 011111111
Q ss_pred --CCCCCC----chhhHHHHHHhCCCEEEEEcccccC
Q 003769 661 --ELGCCS----YIERLGLALNENPHRVFFMEDLDDH 691 (796)
Q Consensus 661 --~~~~~~----~~~~L~eavr~~P~~Vvl~deieka 691 (796)
...... ....|.+.++++ ..+|+||+|+..
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~L~~~-~~LlVlDdv~~~ 113 (287)
T PF00931_consen 78 DSSISDPKDIEELQDQLRELLKDK-RCLLVLDDVWDE 113 (287)
T ss_dssp -STSSCCSSHHHHHHHHHHHHCCT-SEEEEEEEE-SH
T ss_pred ccccccccccccccccchhhhccc-cceeeeeeeccc
Confidence 010111 125777777777 788999999877
No 429
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.027 Score=69.25 Aligned_cols=87 Identities=14% Similarity=0.158 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHhh-c----c----CceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeeccc------ccc--
Q 003769 193 SDDVMSVLNALIN-K----K----RNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFS------FRN-- 255 (796)
Q Consensus 193 ~~ei~~vi~~L~r-~----k----~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~------l~a-- 255 (796)
++-|..|.+.+.+ + + -..++.||.|||||-++++||.-+-.. ..-++.+|++. +..
T Consensus 568 ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgs-------e~~~IriDmse~~evskligsp 640 (898)
T KOG1051|consen 568 DEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGS-------EENFIRLDMSEFQEVSKLIGSP 640 (898)
T ss_pred HHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCC-------ccceEEechhhhhhhhhccCCC
Confidence 4455566666654 1 2 134678999999999999999987554 35789999985 333
Q ss_pred -cchHHHHHHHHHHHHHHHhccCCCEEEEEcchhhh
Q 003769 256 -QSKGEVEQKLVELSCHVKSYMGRGIVLYLGDLKWV 290 (796)
Q Consensus 256 -~~rge~E~rl~~l~~~v~~~~~~~~ILfIDElh~l 290 (796)
+|+|--+- ..|-+.|+. .+.+|++||||...
T Consensus 641 ~gyvG~e~g--g~Lteavrr--rP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 641 PGYVGKEEG--GQLTEAVKR--RPYSVVLFEEIEKA 672 (898)
T ss_pred cccccchhH--HHHHHHHhc--CCceEEEEechhhc
Confidence 58886443 356677776 56799999999743
No 430
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.01 E-value=0.01 Score=61.96 Aligned_cols=125 Identities=18% Similarity=0.167 Sum_probs=72.8
Q ss_pred CCCc-chHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCC--CCCceEEecCCCCccccccccccC
Q 003769 581 VPWQ-KEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGS--HSNNFTNLSSSQSRQDDCRTKKRS 657 (796)
Q Consensus 581 v~gQ-~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~--~~~~~i~~dms~~~~~~~~~~k~~ 657 (796)
|+|. .+.+-..+.+|... ......++++.||+| +|||.|..+++..+-.. . ...+.++..++. .......
T Consensus 11 v~g~~N~~a~~~~~~ia~~-~~~~~~~l~l~G~~G--~GKTHLL~Ai~~~~~~~~~~-~~v~y~~~~~f~-~~~~~~~-- 83 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAEN-PGERYNPLFLYGPSG--LGKTHLLQAIANEAQKQHPG-KRVVYLSAEEFI-REFADAL-- 83 (219)
T ss_dssp --TTTTHHHHHHHHHHHHS-TTTSSSEEEEEESTT--SSHHHHHHHHHHHHHHHCTT-S-EEEEEHHHHH-HHHHHHH--
T ss_pred CcCCcHHHHHHHHHHHHhc-CCCCCCceEEECCCC--CCHHHHHHHHHHHHHhcccc-ccceeecHHHHH-HHHHHHH--
Confidence 4454 33333444444332 122334688999999 99999999999887643 3 457777765542 1111000
Q ss_pred CCCCCCCCCchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCC
Q 003769 658 RDVELGCCSYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 658 ~~~~~~~~~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn 731 (796)
-.+....+-+.++ .+.|++||+|+.-.-.+ ..+..|...++.=+- .| .-+|+||+
T Consensus 84 ------~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~~-~~q~~lf~l~n~~~~---~~-------k~li~ts~ 138 (219)
T PF00308_consen 84 ------RDGEIEEFKDRLR--SADLLIIDDIQFLAGKQ-RTQEELFHLFNRLIE---SG-------KQLILTSD 138 (219)
T ss_dssp ------HTTSHHHHHHHHC--TSSEEEEETGGGGTTHH-HHHHHHHHHHHHHHH---TT-------SEEEEEES
T ss_pred ------Hcccchhhhhhhh--cCCEEEEecchhhcCch-HHHHHHHHHHHHHHh---hC-------CeEEEEeC
Confidence 0122234444444 78999999999874455 667777777765331 12 23788886
No 431
>PRK15115 response regulator GlrR; Provisional
Probab=95.98 E-value=0.022 Score=65.26 Aligned_cols=87 Identities=18% Similarity=0.185 Sum_probs=54.6
Q ss_pred ChHHHHHHHHHHhh---ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHH
Q 003769 192 DSDDVMSVLNALIN---KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVEL 268 (796)
Q Consensus 192 r~~ei~~vi~~L~r---~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l 268 (796)
+...++++++...+ ...++++.|++|+|||++++.+...-.+ .+..|+.+|...+.. ..++. .+
T Consensus 139 ~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r-------~~~~f~~i~c~~~~~---~~~~~---~l 205 (444)
T PRK15115 139 RSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPR-------ASKPFIAINCGALPE---QLLES---EL 205 (444)
T ss_pred cCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCC-------CCCCeEEEeCCCCCH---HHHHH---Hh
Confidence 44555555555443 5667889999999999999988764221 356799999876532 11111 11
Q ss_pred HHH---------------HHhccCCCEEEEEcchhhhhhh
Q 003769 269 SCH---------------VKSYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 269 ~~~---------------v~~~~~~~~ILfIDElh~l~~~ 293 (796)
+.. ... ..+-.|||||++.|-..
T Consensus 206 fg~~~~~~~~~~~~~~g~~~~--a~~gtl~l~~i~~l~~~ 243 (444)
T PRK15115 206 FGHARGAFTGAVSNREGLFQA--AEGGTLFLDEIGDMPAP 243 (444)
T ss_pred cCCCcCCCCCCccCCCCcEEE--CCCCEEEEEccccCCHH
Confidence 111 111 23458999999998765
No 432
>PRK00625 shikimate kinase; Provisional
Probab=95.95 E-value=0.0062 Score=61.44 Aligned_cols=31 Identities=6% Similarity=0.064 Sum_probs=27.2
Q ss_pred ceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEee
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLP 249 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~ 249 (796)
|++|+|.||+|||++++.||+++ +..++.+|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l----------~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL----------SLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----------CCCEEEhh
Confidence 78999999999999999999986 46677776
No 433
>PF14516 AAA_35: AAA-like domain
Probab=95.95 E-value=0.048 Score=60.56 Aligned_cols=94 Identities=7% Similarity=0.167 Sum_probs=64.0
Q ss_pred ChHHHHHHHHHHhhccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc---cchHH--------
Q 003769 192 DSDDVMSVLNALINKKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN---QSKGE-------- 260 (796)
Q Consensus 192 r~~ei~~vi~~L~r~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a---~~rge-------- 260 (796)
|..--+.+.+.|.+.+..+.+.||-.+|||++...+++++.+. |.+.+.+|+..+.. ....+
T Consensus 16 R~~~e~~~~~~i~~~G~~~~I~apRq~GKTSll~~l~~~l~~~-------~~~~v~id~~~~~~~~~~~~~~f~~~~~~~ 88 (331)
T PF14516_consen 16 RPPAEQECYQEIVQPGSYIRIKAPRQMGKTSLLLRLLERLQQQ-------GYRCVYIDLQQLGSAIFSDLEQFLRWFCEE 88 (331)
T ss_pred chHHHHHHHHHHhcCCCEEEEECcccCCHHHHHHHHHHHHHHC-------CCEEEEEEeecCCCcccCCHHHHHHHHHHH
Confidence 7755666777777557888899999999999999999988653 57888888765422 00100
Q ss_pred HH--------------------HHHHHHHHH--HHhccCCCEEEEEcchhhhhhh
Q 003769 261 VE--------------------QKLVELSCH--VKSYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 261 ~E--------------------~rl~~l~~~--v~~~~~~~~ILfIDElh~l~~~ 293 (796)
+. .++...+++ ++.. .+++||||||++.+.+.
T Consensus 89 i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~-~~~lVL~iDEiD~l~~~ 142 (331)
T PF14516_consen 89 ISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQI-DKPLVLFIDEIDRLFEY 142 (331)
T ss_pred HHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcC-CCCEEEEEechhhhccC
Confidence 00 123333333 2222 67999999999999874
No 434
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.91 E-value=0.034 Score=67.38 Aligned_cols=89 Identities=18% Similarity=0.161 Sum_probs=61.7
Q ss_pred HHHHHHhh--ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeeccc-----c----cc-----------
Q 003769 198 SVLNALIN--KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFS-----F----RN----------- 255 (796)
Q Consensus 198 ~vi~~L~r--~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~-----l----~a----------- 255 (796)
++++.|.+ ..+=++|..|.|.|||+++-.++.+...| .++--+++|-+. | ++
T Consensus 26 rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~~~------~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~ 99 (894)
T COG2909 26 RLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELAADG------AAVAWLSLDESDNDPARFLSYLIAALQQATPTLGD 99 (894)
T ss_pred HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcCcc------cceeEeecCCccCCHHHHHHHHHHHHHHhCccccH
Confidence 56677877 55666777999999999999998855433 233445555211 1 00
Q ss_pred --------cchHHHHHHHHHHHHHHHhccCCCEEEEEcchhhhhhh
Q 003769 256 --------QSKGEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 256 --------~~rge~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~ 293 (796)
.-+..++.-+..++.++.++ .+|++|||||.|.+-+.
T Consensus 100 ~a~~l~q~~~~~~l~~l~~~L~~Ela~~-~~pl~LVlDDyHli~~~ 144 (894)
T COG2909 100 EAQTLLQKHQYVSLESLLSSLLNELASY-EGPLYLVLDDYHLISDP 144 (894)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhh-cCceEEEeccccccCcc
Confidence 11122556778899999887 88999999999988665
No 435
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.017 Score=61.36 Aligned_cols=106 Identities=16% Similarity=0.180 Sum_probs=75.4
Q ss_pred cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCC--chhhHHHHHHhC
Q 003769 601 KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCS--YIERLGLALNEN 678 (796)
Q Consensus 601 ~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~--~~~~L~eavr~~ 678 (796)
..|-|. |+.||.| .|||-+|+++|.-- + .-|||+=.|+- +-| |+|.| .+..|.+.-|.+
T Consensus 209 dppkgv-llygppg--tgktl~aravanrt-d---acfirvigsel------vqk------yvgegarmvrelf~martk 269 (435)
T KOG0729|consen 209 DPPKGV-LLYGPPG--TGKTLCARAVANRT-D---ACFIRVIGSEL------VQK------YVGEGARMVRELFEMARTK 269 (435)
T ss_pred CCCCce-EEeCCCC--CchhHHHHHHhccc-C---ceEEeehhHHH------HHH------HhhhhHHHHHHHHHHhccc
Confidence 445555 4789999 99999999999754 2 45888766643 112 34433 346899999999
Q ss_pred CCEEEEEccccc---------CCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 679 PHRVFFMEDLDD---------HKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 679 P~~Vvl~deiek---------a~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
--++|||||||- ||-|. +||..+|..+..=-=-|..| |.=+.|.+|-
T Consensus 270 kaciiffdeidaiggarfddg~ggdn-evqrtmleli~qldgfdprg------nikvlmatnr 325 (435)
T KOG0729|consen 270 KACIIFFDEIDAIGGARFDDGAGGDN-EVQRTMLELINQLDGFDPRG------NIKVLMATNR 325 (435)
T ss_pred ceEEEEeeccccccCccccCCCCCcH-HHHHHHHHHHHhccCCCCCC------CeEEEeecCC
Confidence 999999999983 35688 99999999986422223343 5557788873
No 436
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.88 E-value=0.026 Score=57.24 Aligned_cols=95 Identities=15% Similarity=0.205 Sum_probs=59.2
Q ss_pred CCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCC-CCcc-ccccccccC-CCC---CCCCCCchhhHHHHHH
Q 003769 603 EQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSS-QSRQ-DDCRTKKRS-RDV---ELGCCSYIERLGLALN 676 (796)
Q Consensus 603 ~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms-~~~~-~~~~~~k~~-~~~---~~~~~~~~~~L~eavr 676 (796)
+..+++|.||+| .|||++.++|+.++-.+ ...+.+.-. +... +...+ ... ... ++...++.+.+..++|
T Consensus 24 ~g~~i~I~G~tG--SGKTTll~aL~~~i~~~--~~~i~ied~~E~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~lR 98 (186)
T cd01130 24 ARKNILISGGTG--SGKTTLLNALLAFIPPD--ERIITIEDTAELQLPHPNWV-RLVTRPGNVEGSGEVTMADLLRSALR 98 (186)
T ss_pred CCCEEEEECCCC--CCHHHHHHHHHhhcCCC--CCEEEECCccccCCCCCCEE-EEEEecCCCCCCCccCHHHHHHHHhc
Confidence 346899999999 99999999999998643 455655322 2211 11100 000 001 1112345567778899
Q ss_pred hCCCEEEEEcccccCCCChHHHHHHHHHHHHcc
Q 003769 677 ENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENG 709 (796)
Q Consensus 677 ~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G 709 (796)
.+| .+|++.||-.. +.+. ++++...|
T Consensus 99 ~~p-d~i~igEir~~-----ea~~-~~~a~~tG 124 (186)
T cd01130 99 MRP-DRIIVGEVRGG-----EALD-LLQAMNTG 124 (186)
T ss_pred cCC-CEEEEEccCcH-----HHHH-HHHHHhcC
Confidence 999 66779999644 5555 66788776
No 437
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.026 Score=61.62 Aligned_cols=122 Identities=11% Similarity=0.224 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhhc---cCCCeE---EEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccc------cccc-c
Q 003769 588 MPEIARTILECRS---KKEQTW---LLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQD------DCRT-K 654 (796)
Q Consensus 588 v~~ia~~i~~~rs---~~~~~~---~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~------~~~~-~ 654 (796)
..-++.+++-++- .+-++| +|+.||+| +|||.|+|+||+-+= ||..-+ |+.. .|+. +
T Consensus 155 l~Ya~s~l~fsek~vntnlIt~NRliLlhGPPG--TGKTSLCKaLaQkLS-------IR~~~~-y~~~~liEinshsLFS 224 (423)
T KOG0744|consen 155 LSYAASALLFSEKKVNTNLITWNRLILLHGPPG--TGKTSLCKALAQKLS-------IRTNDR-YYKGQLIEINSHSLFS 224 (423)
T ss_pred HHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCC--CChhHHHHHHHHhhe-------eeecCc-cccceEEEEehhHHHH
Confidence 3455666666655 344555 89999999 999999999998872 332222 2100 1110 1
Q ss_pred ccCCCCCCCCCC-ch----hhHHHHHHhCCCEE-EEEcccccC---------CCCh---HHHHHHHHHHHHcceEecCCC
Q 003769 655 KRSRDVELGCCS-YI----ERLGLALNENPHRV-FFMEDLDDH---------KVDS---CYCQKGLKQAIENGCIALADG 716 (796)
Q Consensus 655 k~~~~~~~~~~~-~~----~~L~eavr~~P~~V-vl~deieka---------~~~~---~~v~~~l~q~~d~G~l~d~~G 716 (796)
|- |...| .+ .++.|.+...-.=| ||+||||-- +-.| =.|-|.++.-+|.=+
T Consensus 225 KW-----FsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK------ 293 (423)
T KOG0744|consen 225 KW-----FSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK------ 293 (423)
T ss_pred HH-----HhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc------
Confidence 10 11111 11 45666666644445 799999943 0001 146778887777432
Q ss_pred ceecCCcEEEEeeCCCC
Q 003769 717 EIVPLKDSIIIFSCDSL 733 (796)
Q Consensus 717 ~~v~~~n~IiilTsn~~ 733 (796)
...|.+|..|||.-
T Consensus 294 ---~~~NvliL~TSNl~ 307 (423)
T KOG0744|consen 294 ---RYPNVLILATSNLT 307 (423)
T ss_pred ---cCCCEEEEeccchH
Confidence 25789999999964
No 438
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.86 E-value=0.022 Score=57.22 Aligned_cols=34 Identities=26% Similarity=0.300 Sum_probs=28.6
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEee
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLP 249 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~ 249 (796)
.+.+++|+|++|+|||++++.|+.++ +..++..|
T Consensus 3 ~~~~I~liG~~GaGKStl~~~La~~l----------~~~~vd~D 36 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQL----------NMEFYDSD 36 (172)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHc----------CCcEEECC
Confidence 36789999999999999999999875 45677776
No 439
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.85 E-value=0.027 Score=62.60 Aligned_cols=85 Identities=15% Similarity=0.248 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEee------c------ccccc-c-chH
Q 003769 194 DDVMSVLNALINKKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLP------L------FSFRN-Q-SKG 259 (796)
Q Consensus 194 ~ei~~vi~~L~r~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~------~------~~l~a-~-~rg 259 (796)
.++..++..+.+.+.|++++|++|+|||+++++|+..|... .+++.+. + -.+.. . ..|
T Consensus 147 ~~~~~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~ip~~--------~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~ 218 (332)
T PRK13900 147 KKIKEFLEHAVISKKNIIISGGTSTGKTTFTNAALREIPAI--------ERLITVEDAREIVLSNHPNRVHLLASKGGQG 218 (332)
T ss_pred HHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhCCCC--------CeEEEecCCCccccccCCCEEEEEecCCCCC
Confidence 35556666666688999999999999999999999877533 2343331 1 00111 0 011
Q ss_pred HHHHHHHHHHHHHHhccCCCEEEEEcchh
Q 003769 260 EVEQKLVELSCHVKSYMGRGIVLYLGDLK 288 (796)
Q Consensus 260 e~E~rl~~l~~~v~~~~~~~~ILfIDElh 288 (796)
.-+-.+.++++..-. ..|-+++|+|+.
T Consensus 219 ~~~~~~~~ll~~~LR--~~PD~IivGEiR 245 (332)
T PRK13900 219 RAKVTTQDLIEACLR--LRPDRIIVGELR 245 (332)
T ss_pred cCcCcHHHHHHHHhc--cCCCeEEEEecC
Confidence 112234556655554 467899999996
No 440
>PRK04296 thymidine kinase; Provisional
Probab=95.83 E-value=0.017 Score=59.03 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=21.0
Q ss_pred eEEEcCCcccHHHHHHHHHHHHHc
Q 003769 210 TVIVGGNLAAIEGVIRGIIDQFER 233 (796)
Q Consensus 210 ~vLvGepGvGKTaiv~~la~ri~~ 233 (796)
.+++||||+|||+++-+++.+...
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~ 28 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEE 28 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHH
Confidence 467899999999999999998754
No 441
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.82 E-value=0.029 Score=64.77 Aligned_cols=75 Identities=13% Similarity=0.177 Sum_probs=44.9
Q ss_pred eEEEEecCCCCCchHHHHHHHHHHHHcCCC-CCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCEEE
Q 003769 605 TWLLFLGADDHNHGKEKIAREIAKVVFGSH-SNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHRVF 683 (796)
Q Consensus 605 ~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~-~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vv 683 (796)
-+++|.||+| +|||.|+.++|..+-... ...++.++..++ ..+... + . ..+-...+.+..+. ...|+
T Consensus 131 n~l~lyG~~G--~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f-~~~~~~-----~--~-~~~~~~~f~~~~~~-~~dvL 198 (440)
T PRK14088 131 NPLFIYGGVG--LGKTHLLQSIGNYVVQNEPDLRVMYITSEKF-LNDLVD-----S--M-KEGKLNEFREKYRK-KVDVL 198 (440)
T ss_pred CeEEEEcCCC--CcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH-HHHHHH-----H--H-hcccHHHHHHHHHh-cCCEE
Confidence 3599999999 999999999998874321 024566665433 111100 0 0 01112344444443 45799
Q ss_pred EEcccccC
Q 003769 684 FMEDLDDH 691 (796)
Q Consensus 684 l~deieka 691 (796)
|||||+..
T Consensus 199 lIDDi~~l 206 (440)
T PRK14088 199 LIDDVQFL 206 (440)
T ss_pred EEechhhh
Confidence 99999854
No 442
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.82 E-value=0.023 Score=60.28 Aligned_cols=96 Identities=9% Similarity=0.122 Sum_probs=54.9
Q ss_pred CCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEec--CCCCccccc--cccccCCCCCCCCCC---chhhHH---
Q 003769 603 EQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLS--SSQSRQDDC--RTKKRSRDVELGCCS---YIERLG--- 672 (796)
Q Consensus 603 ~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~d--ms~~~~~~~--~~~k~~~~~~~~~~~---~~~~L~--- 672 (796)
+.+++++.||.| +|||++++.++..+-.. .++... .+.....+. ......|.+ ..+.. ...+|.
T Consensus 42 ~~~~~~l~G~~G--~GKTtl~~~l~~~l~~~---~~~~~~~~~~~~~~~~~l~~i~~~lG~~-~~~~~~~~~~~~l~~~l 115 (269)
T TIGR03015 42 REGFILITGEVG--AGKTTLIRNLLKRLDQE---RVVAAKLVNTRVDAEDLLRMVAADFGLE-TEGRDKAALLRELEDFL 115 (269)
T ss_pred CCCEEEEEcCCC--CCHHHHHHHHHHhcCCC---CeEEeeeeCCCCCHHHHHHHHHHHcCCC-CCCCCHHHHHHHHHHHH
Confidence 457899999999 99999999999887522 233222 111111110 000001111 11111 112333
Q ss_pred -HHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHH
Q 003769 673 -LALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIE 707 (796)
Q Consensus 673 -eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d 707 (796)
....++...||++||++.. ++ ..++.+....+
T Consensus 116 ~~~~~~~~~~vliiDe~~~l--~~-~~~~~l~~l~~ 148 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNL--TP-ELLEELRMLSN 148 (269)
T ss_pred HHHHhCCCCeEEEEECcccC--CH-HHHHHHHHHhC
Confidence 3344666679999999999 98 88777765543
No 443
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.82 E-value=0.028 Score=55.93 Aligned_cols=67 Identities=12% Similarity=0.140 Sum_probs=44.8
Q ss_pred ceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc----------cchHHHHHHHHHHHHHHHhccCC
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN----------QSKGEVEQKLVELSCHVKSYMGR 278 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a----------~~rge~E~rl~~l~~~v~~~~~~ 278 (796)
-+.|.|.||+|||+|++.|.+++... |.+++.||...+.. ..|.|.-.|+.++-..+.. .
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~-------g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~---~ 73 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFAR-------GIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLAD---Q 73 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT-------TS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHH---T
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHh---C
Confidence 35688999999999999999999764 67899999876654 1233333444444444443 3
Q ss_pred CEEEEEc
Q 003769 279 GIVLYLG 285 (796)
Q Consensus 279 ~~ILfID 285 (796)
++|+++.
T Consensus 74 G~ivIva 80 (156)
T PF01583_consen 74 GIIVIVA 80 (156)
T ss_dssp TSEEEEE
T ss_pred CCeEEEe
Confidence 5555554
No 444
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.81 E-value=0.021 Score=55.24 Aligned_cols=31 Identities=26% Similarity=0.223 Sum_probs=26.4
Q ss_pred ceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEee
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLP 249 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~ 249 (796)
|++|+|+||+|||++++.|+.++ +..++..|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l----------~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL----------GLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh----------CCCEEEch
Confidence 68999999999999999999875 45666666
No 445
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=95.81 E-value=0.025 Score=60.86 Aligned_cols=137 Identities=20% Similarity=0.309 Sum_probs=86.0
Q ss_pred cccccccHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHH-----HHHHcC
Q 003769 558 NSFNKFTDENLKVLSDALERKAVVPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREI-----AKVVFG 632 (796)
Q Consensus 558 ~~~~~~~~e~L~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~L-----A~~~fg 632 (796)
++|.+...+.|.-|...+..+ -|.=...|+.|-+.-.++|+ | +|+.|||| .||+.||+.+ |+.-|.
T Consensus 169 srfa~ere~tl~~lksgiatr--np~fnrmieqierva~rsr~--p---~ll~gptg--agksflarriyelk~arhq~s 239 (531)
T COG4650 169 SRFAEEREQTLDFLKSGIATR--NPHFNRMIEQIERVAIRSRA--P---ILLNGPTG--AGKSFLARRIYELKQARHQFS 239 (531)
T ss_pred HHHHHHHHHHHHHHHhccccc--ChHHHHHHHHHHHHHhhccC--C---eEeecCCC--cchhHHHHHHHHHHHHHHhcC
Confidence 445444445666666666666 55555555555554444443 3 78999999 9999999865 666776
Q ss_pred CCCCceEEecCCCCccccccccccCCCC--CCCCCCchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcce
Q 003769 633 SHSNNFTNLSSSQSRQDDCRTKKRSRDV--ELGCCSYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGC 710 (796)
Q Consensus 633 ~~~~~~i~~dms~~~~~~~~~~k~~~~~--~~~~~~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~ 710 (796)
.. |+-+++..-. ++...+-+-|-+ .|.|. .+.=...+|.----.+|||||-.. .. |-+.+|+.+|++-|
T Consensus 240 g~---fvevncatlr-gd~amsalfghvkgaftga--~~~r~gllrsadggmlfldeigel--ga-deqamllkaieekr 310 (531)
T COG4650 240 GA---FVEVNCATLR-GDTAMSALFGHVKGAFTGA--RESREGLLRSADGGMLFLDEIGEL--GA-DEQAMLLKAIEEKR 310 (531)
T ss_pred Cc---eEEEeeeeec-CchHHHHHHhhhccccccc--hhhhhhhhccCCCceEehHhhhhc--Cc-cHHHHHHHHHHhhc
Confidence 55 9999887331 222222222211 12222 122233456666678999999988 66 77889999999988
Q ss_pred Ee
Q 003769 711 IA 712 (796)
Q Consensus 711 l~ 712 (796)
+-
T Consensus 311 f~ 312 (531)
T COG4650 311 FY 312 (531)
T ss_pred cC
Confidence 75
No 446
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.79 E-value=0.011 Score=59.92 Aligned_cols=39 Identities=13% Similarity=0.210 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhccCceEEEcCCcccHHHHHHHHHHHHH
Q 003769 194 DDVMSVLNALINKKRNTVIVGGNLAAIEGVIRGIIDQFE 232 (796)
Q Consensus 194 ~ei~~vi~~L~r~k~n~vLvGepGvGKTaiv~~la~ri~ 232 (796)
+++..++....+.+.+++++|++|+|||++.+.|+..+.
T Consensus 12 ~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 12 PLQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 566666666666778999999999999999999998663
No 447
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=95.79 E-value=0.051 Score=63.18 Aligned_cols=131 Identities=17% Similarity=0.208 Sum_probs=92.0
Q ss_pred CCCcchHHHHHHHHHHHhhc-cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCC
Q 003769 581 VPWQKEIMPEIARTILECRS-KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs-~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~ 659 (796)
++|...++.. .+..++. ++.....|+.|-|| +||.-+|+++=..==-.. ..||++++..- ++..--|-+-|
T Consensus 247 Iig~S~~m~~---~~~~akr~A~tdstVLi~GESG--TGKElfA~~IH~~S~R~~-~PFIaiNCaAi-Pe~LlESELFG- 318 (560)
T COG3829 247 IIGESPAMLR---VLELAKRIAKTDSTVLILGESG--TGKELFARAIHNLSPRAN-GPFIAINCAAI-PETLLESELFG- 318 (560)
T ss_pred hccCCHHHHH---HHHHHHhhcCCCCcEEEecCCC--ccHHHHHHHHHhcCcccC-CCeEEEecccC-CHHHHHHHHhC-
Confidence 6666665544 4444444 67788999999999 999999999988775556 88999999854 22111111111
Q ss_pred CCCCCCCch-hhHHHHHHh-CC-------CEEEEEcccccCCCChHHHHHHHHHHHHcceEec---CCCceecCCcEEEE
Q 003769 660 VELGCCSYI-ERLGLALNE-NP-------HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIAL---ADGEIVPLKDSIII 727 (796)
Q Consensus 660 ~~~~~~~~~-~~L~eavr~-~P-------~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d---~~G~~v~~~n~Iii 727 (796)
|. |-+|.|.+. +| .-=+|||||=.. .. ..|.-||+++.++.+.- .....||++ ||
T Consensus 319 -------ye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgem--pl-~LQaKLLRVLQEkei~rvG~t~~~~vDVR---II 385 (560)
T COG3829 319 -------YEKGAFTGASKGGKPGLFELANGGTLFLDEIGEM--PL-PLQAKLLRVLQEKEIERVGGTKPIPVDVR---II 385 (560)
T ss_pred -------cCCccccccccCCCCcceeeccCCeEEehhhccC--CH-HHHHHHHHHHhhceEEecCCCCceeeEEE---EE
Confidence 21 345555554 33 335899999999 88 99999999999998885 334667777 89
Q ss_pred eeCCC
Q 003769 728 FSCDS 732 (796)
Q Consensus 728 lTsn~ 732 (796)
-++|-
T Consensus 386 AATN~ 390 (560)
T COG3829 386 AATNR 390 (560)
T ss_pred eccCc
Confidence 98884
No 448
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.77 E-value=0.019 Score=61.51 Aligned_cols=104 Identities=14% Similarity=0.142 Sum_probs=62.7
Q ss_pred CeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCEEE
Q 003769 604 QTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHRVF 683 (796)
Q Consensus 604 ~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vv 683 (796)
...++|.||+| ||||.||-+||..+-... -..+-+...+. .. ++..+..+ ...-++|... -..+.|+
T Consensus 105 ~~nl~l~G~~G--~GKThLa~Ai~~~l~~~g-~sv~f~~~~el-~~-----~Lk~~~~~--~~~~~~l~~~--l~~~dlL 171 (254)
T COG1484 105 GENLVLLGPPG--VGKTHLAIAIGNELLKAG-ISVLFITAPDL-LS-----KLKAAFDE--GRLEEKLLRE--LKKVDLL 171 (254)
T ss_pred CCcEEEECCCC--CcHHHHHHHHHHHHHHcC-CeEEEEEHHHH-HH-----HHHHHHhc--CchHHHHHHH--hhcCCEE
Confidence 35788999999 999999999998886333 34444554432 11 11111111 1111233332 3678899
Q ss_pred EEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 684 FMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 684 l~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
+||||=.--.++ ..-+.+.|+|..=+.+ +. + |+|||.
T Consensus 172 IiDDlG~~~~~~-~~~~~~~q~I~~r~~~---------~~-~-~~tsN~ 208 (254)
T COG1484 172 IIDDIGYEPFSQ-EEADLLFQLISRRYES---------RS-L-IITSNL 208 (254)
T ss_pred EEecccCccCCH-HHHHHHHHHHHHHHhh---------cc-c-eeecCC
Confidence 999996532266 6778888877664443 12 2 888984
No 449
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.76 E-value=0.062 Score=63.98 Aligned_cols=63 Identities=11% Similarity=-0.032 Sum_probs=43.1
Q ss_pred CCCCCC---ChHHHHHHHHHHhh----ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeeccccc
Q 003769 186 NKSLGR---DSDDVMSVLNALIN----KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFR 254 (796)
Q Consensus 186 ~g~ldp---r~~ei~~vi~~L~r----~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~ 254 (796)
+|..-| --.||-.++.-+.. ++..++|+|.||+|||++++.|+.++... .+..++.+|...+.
T Consensus 364 ~G~~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~------~g~~~~~lD~D~vr 433 (568)
T PRK05537 364 EGLEIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEM------RGRPVTLLDGDVVR 433 (568)
T ss_pred CCCCCChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhc------cCceEEEeCCcHHH
Confidence 566666 44555556666543 44467889999999999999999998631 13456666665443
No 450
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.75 E-value=0.04 Score=55.04 Aligned_cols=25 Identities=12% Similarity=0.016 Sum_probs=20.9
Q ss_pred ceEEEcCCcccHHHHHHHHHHHHHc
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQFER 233 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri~~ 233 (796)
.+++.||||+|||+++..++....+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~ 25 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA 25 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3678999999999999988876653
No 451
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.75 E-value=0.018 Score=66.48 Aligned_cols=90 Identities=13% Similarity=0.186 Sum_probs=53.6
Q ss_pred CCeEEEEecCCCCCchHHHHHHHHHHHHcCC--CCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCC
Q 003769 603 EQTWLLFLGADDHNHGKEKIAREIAKVVFGS--HSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPH 680 (796)
Q Consensus 603 ~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~--~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~ 680 (796)
+..+++|.||+| +|||.|+++++..+... . ..++.++..++ ..+.. .. . ..+-...+.+.++ -+
T Consensus 147 ~~~~l~l~G~~G--~GKThL~~ai~~~~~~~~~~-~~v~yi~~~~~-~~~~~--~~-----~-~~~~~~~~~~~~~--~~ 212 (450)
T PRK00149 147 AYNPLFIYGGVG--LGKTHLLHAIGNYILEKNPN-AKVVYVTSEKF-TNDFV--NA-----L-RNNTMEEFKEKYR--SV 212 (450)
T ss_pred cCCeEEEECCCC--CCHHHHHHHHHHHHHHhCCC-CeEEEEEHHHH-HHHHH--HH-----H-HcCcHHHHHHHHh--cC
Confidence 346899999999 99999999999998643 2 34566665543 11110 00 0 0111234555555 37
Q ss_pred EEEEEcccccCCCChHHHHHHHHHHHH
Q 003769 681 RVFFMEDLDDHKVDSCYCQKGLKQAIE 707 (796)
Q Consensus 681 ~Vvl~deieka~~~~~~v~~~l~q~~d 707 (796)
.|++||||+.-.-.. ..+..|+..|+
T Consensus 213 dlLiiDDi~~l~~~~-~~~~~l~~~~n 238 (450)
T PRK00149 213 DVLLIDDIQFLAGKE-RTQEEFFHTFN 238 (450)
T ss_pred CEEEEehhhhhcCCH-HHHHHHHHHHH
Confidence 799999998641133 34444555443
No 452
>PRK07261 topology modulation protein; Provisional
Probab=95.75 E-value=0.019 Score=57.55 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=20.7
Q ss_pred ceEEEcCCcccHHHHHHHHHHHH
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri 231 (796)
.++++|+||+||||+++.|+.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 453
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=95.74 E-value=0.0062 Score=70.04 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=40.7
Q ss_pred ChHHHHHHHHHH---hhccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc
Q 003769 192 DSDDVMSVLNAL---INKKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN 255 (796)
Q Consensus 192 r~~ei~~vi~~L---~r~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a 255 (796)
+..-+.++.+.+ +.+..++++.||+||||+.++++|=+.=.+ .+..|+.+|.+++-.
T Consensus 146 ~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R-------~~~PFVavNcaAip~ 205 (464)
T COG2204 146 ESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPR-------AKGPFIAVNCAAIPE 205 (464)
T ss_pred cCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcc-------cCCCceeeecccCCH
Confidence 444444444444 448888999999999999999988653222 256899999887643
No 454
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.74 E-value=0.27 Score=56.67 Aligned_cols=68 Identities=10% Similarity=0.152 Sum_probs=42.6
Q ss_pred HHHHHHcCCChHHHHHHHHhhccCCCCCCCCCCCCCCCh-HHHHHHHHHHhh-----------ccCceEEEcCCcccHHH
Q 003769 155 SRVMREAGFSSSQVKIKVEENVPLGICSQSTNKSLGRDS-DDVMSVLNALIN-----------KKRNTVIVGGNLAAIEG 222 (796)
Q Consensus 155 a~vL~~~Gis~~~l~~~v~~~v~~~~~s~~p~g~ldpr~-~ei~~vi~~L~r-----------~k~n~vLvGepGvGKTa 222 (796)
.+.|...|++..-+.+.+.. +. ...+..+ .-...+.+.|.+ .+..++|+||+|||||+
T Consensus 167 ~~~L~~~gv~~~~~~~l~~~-~~---------~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~i~~vGptGvGKTT 236 (424)
T PRK05703 167 YKRLKRSGLSPEIAEKLLKL-LL---------EHMPPRERTAWRYLLELLANMIPVRVEDILKQGGVVALVGPTGVGKTT 236 (424)
T ss_pred HHHHHHCCCCHHHHHHHHHH-HH---------HHhhhhHHHHHHHHHHHHHHHhCccccccccCCcEEEEECCCCCCHHH
Confidence 46677788887766665542 21 0111111 133444444443 14578899999999999
Q ss_pred HHHHHHHHHH
Q 003769 223 VIRGIIDQFE 232 (796)
Q Consensus 223 iv~~la~ri~ 232 (796)
++-.||.++.
T Consensus 237 t~~kLA~~~~ 246 (424)
T PRK05703 237 TLAKLAARYA 246 (424)
T ss_pred HHHHHHHHHH
Confidence 9999998876
No 455
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.73 E-value=0.067 Score=57.91 Aligned_cols=60 Identities=12% Similarity=0.151 Sum_probs=39.5
Q ss_pred cchHHHHHHHHHHHhhc---------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCC
Q 003769 584 QKEIMPEIARTILECRS---------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQS 646 (796)
Q Consensus 584 Q~~av~~ia~~i~~~rs---------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~ 646 (796)
+..+...+.+.+...+. .++...++|+||+| +|||+++..||..+-... ....-+|+.-|
T Consensus 43 ~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G--~GKTTt~akLA~~l~~~g-~~V~li~~D~~ 111 (272)
T TIGR00064 43 AELLKEILKEYLKEILKETDLELIVEENKPNVILFVGVNG--VGKTTTIAKLANKLKKQG-KSVLLAAGDTF 111 (272)
T ss_pred HHHHHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCC--CcHHHHHHHHHHHHHhcC-CEEEEEeCCCC
Confidence 34555555565555432 34457899999999 999999999998775433 34444555433
No 456
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.72 E-value=0.092 Score=55.04 Aligned_cols=77 Identities=14% Similarity=0.052 Sum_probs=48.5
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHH-cCCCCCCCCCceEEEeeccc------------------ccc-----------
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFE-RGQVPGDLRYAQFISLPLFS------------------FRN----------- 255 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~-~~~vp~~L~~~~v~~l~~~~------------------l~a----------- 255 (796)
++..+++.|+||+|||+++..++.... +| .+++.++... ...
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g--------~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~ 95 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQG--------KKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNT 95 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCC--------CEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccc
Confidence 566667789999999999999976543 33 3333333210 000
Q ss_pred ----cchHHHHHHHHHHHHHHHhccCCCEEEEEcchhhhhh
Q 003769 256 ----QSKGEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAE 292 (796)
Q Consensus 256 ----~~rge~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~ 292 (796)
......++.+..+.+.+++ .++-+++||++-.+..
T Consensus 96 ~~~~~~~~~~~~ll~~l~~~i~~--~~~~~iviDs~t~~~~ 134 (234)
T PRK06067 96 EGFEWNSTLANKLLELIIEFIKS--KREDVIIIDSLTIFAT 134 (234)
T ss_pred cccccCcchHHHHHHHHHHHHHh--cCCCEEEEecHHHHHh
Confidence 0112345666667777765 3567999999997754
No 457
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.71 E-value=0.024 Score=58.52 Aligned_cols=81 Identities=7% Similarity=-0.022 Sum_probs=50.9
Q ss_pred eEEEcCCcccHHHHHHHHHHHHHcC--CCCCCCCCceEEEeeccccc---ccchHHHHHHHHHHHHHHHhccCCCEEEEE
Q 003769 210 TVIVGGNLAAIEGVIRGIIDQFERG--QVPGDLRYAQFISLPLFSFR---NQSKGEVEQKLVELSCHVKSYMGRGIVLYL 284 (796)
Q Consensus 210 ~vLvGepGvGKTaiv~~la~ri~~~--~vp~~L~~~~v~~l~~~~l~---a~~rge~E~rl~~l~~~v~~~~~~~~ILfI 284 (796)
++|.|.||+|||+.++.||+.+.+. +|+..=+++.+..+.-.++- ..|+.-+-++...++..+- ++.++++
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSal----kn~~VIv 79 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLKSVERLLDSAL----KNYLVIV 79 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHHHHHHHHHHHHh----cceEEEE
Confidence 5788999999999999999988755 23322222223223222221 1466665555554444333 3578999
Q ss_pred cchhhhhhhh
Q 003769 285 GDLKWVAEFW 294 (796)
Q Consensus 285 DElh~l~~~~ 294 (796)
|++-++-+.|
T Consensus 80 DdtNYyksmR 89 (261)
T COG4088 80 DDTNYYKSMR 89 (261)
T ss_pred ecccHHHHHH
Confidence 9998887764
No 458
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.69 E-value=0.045 Score=60.00 Aligned_cols=84 Identities=12% Similarity=0.178 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhccCceEEEcCCcccHHHHHHHHHHHHHcC----------CCCC-CCCCceEEEeeccccc-ccchHH
Q 003769 193 SDDVMSVLNALINKKRNTVIVGGNLAAIEGVIRGIIDQFERG----------QVPG-DLRYAQFISLPLFSFR-NQSKGE 260 (796)
Q Consensus 193 ~~ei~~vi~~L~r~k~n~vLvGepGvGKTaiv~~la~ri~~~----------~vp~-~L~~~~v~~l~~~~l~-a~~rge 260 (796)
.++....+..+.+.+.|++++|++|+|||+++++|+..|... +.++ .+.+...+.+....=. .
T Consensus 118 ~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~----- 192 (299)
T TIGR02782 118 TAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAIS----- 192 (299)
T ss_pred CHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCC-----
Q ss_pred HHHHHHHHHHHHHhccCCCEEEEEcch
Q 003769 261 VEQKLVELSCHVKSYMGRGIVLYLGDL 287 (796)
Q Consensus 261 ~E~rl~~l~~~v~~~~~~~~ILfIDEl 287 (796)
+.++++..-. ..|-+++++|+
T Consensus 193 ----~~~~l~~aLR--~~pD~iivGEi 213 (299)
T TIGR02782 193 ----MTRLLKATLR--LRPDRIIVGEV 213 (299)
T ss_pred ----HHHHHHHHhc--CCCCEEEEecc
No 459
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.69 E-value=0.026 Score=67.14 Aligned_cols=112 Identities=13% Similarity=0.106 Sum_probs=61.3
Q ss_pred CCCcchH-HHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCC--CCCceEEecCCCCccccccccccC
Q 003769 581 VPWQKEI-MPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGS--HSNNFTNLSSSQSRQDDCRTKKRS 657 (796)
Q Consensus 581 v~gQ~~a-v~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~--~~~~~i~~dms~~~~~~~~~~k~~ 657 (796)
|+|.... +-..+.++..+- .+..-+++|.|++| +|||-|+.+++..+-.. . ...+.+.+.++. .+...
T Consensus 291 vvG~sN~~A~aaa~avae~~-~~~~NpL~LyG~sG--sGKTHLL~AIa~~a~~~~~g-~~V~Yitaeef~-~el~~---- 361 (617)
T PRK14086 291 VIGASNRFAHAAAVAVAEAP-AKAYNPLFIYGESG--LGKTHLLHAIGHYARRLYPG-TRVRYVSSEEFT-NEFIN---- 361 (617)
T ss_pred cCCCccHHHHHHHHHHHhCc-cccCCcEEEECCCC--CCHHHHHHHHHHHHHHhCCC-CeEEEeeHHHHH-HHHHH----
Confidence 5555432 333444443321 22233589999999 99999999999987431 2 345666665431 11100
Q ss_pred CCCCCCCCCchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHc
Q 003769 658 RDVELGCCSYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIEN 708 (796)
Q Consensus 658 ~~~~~~~~~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~ 708 (796)
. .. .+-.+.+-+.+++ +.|++||||+...... ..+..|+.+|+.
T Consensus 362 -a--l~-~~~~~~f~~~y~~--~DLLlIDDIq~l~gke-~tqeeLF~l~N~ 405 (617)
T PRK14086 362 -S--IR-DGKGDSFRRRYRE--MDILLVDDIQFLEDKE-STQEEFFHTFNT 405 (617)
T ss_pred -H--HH-hccHHHHHHHhhc--CCEEEEehhccccCCH-HHHHHHHHHHHH
Confidence 0 00 0112234444443 5899999998663344 444555555544
No 460
>PRK14974 cell division protein FtsY; Provisional
Probab=95.68 E-value=0.18 Score=56.35 Aligned_cols=160 Identities=11% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHcCCChHHHHHHHHhhccCCCCCCCCCCCCCC----ChHHHHHHHHHHhh-c-------------cCceEEEcC
Q 003769 154 VSRVMREAGFSSSQVKIKVEENVPLGICSQSTNKSLGR----DSDDVMSVLNALIN-K-------------KRNTVIVGG 215 (796)
Q Consensus 154 ~a~vL~~~Gis~~~l~~~v~~~v~~~~~s~~p~g~ldp----r~~ei~~vi~~L~r-~-------------k~n~vLvGe 215 (796)
+...|-+.+++.+.+++.+. .+.............++ ++-=-..+.++|.. . +.-++++|+
T Consensus 70 l~~~Ll~~dv~~~~a~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~vi~~~G~ 148 (336)
T PRK14974 70 LELELLESDVALEVAEEILE-SLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSVGDLFDLIEEIKSKGKPVVIVFVGV 148 (336)
T ss_pred HHHHHHHCCCCHHHHHHHHH-HHHHHHhhccCCCccCHHHHHHHHHHHHHHHHhCCCcchhhhhhhhccCCCeEEEEEcC
Q ss_pred CcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHH--------------------HHHHHHHHHHHhc
Q 003769 216 NLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVE--------------------QKLVELSCHVKSY 275 (796)
Q Consensus 216 pGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E--------------------~rl~~l~~~v~~~ 275 (796)
||+|||+++..||..+... +.++.-++...+......++. .-+.+.++.++.
T Consensus 149 ~GvGKTTtiakLA~~l~~~-------g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~- 220 (336)
T PRK14974 149 NGTGKTTTIAKLAYYLKKN-------GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKA- 220 (336)
T ss_pred CCCCHHHHHHHHHHHHHHc-------CCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHh-
Q ss_pred cCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHH
Q 003769 276 MGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQT 343 (796)
Q Consensus 276 ~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~e 343 (796)
.+--+++||..+.+-.. .....||+.+.........+.++-++|-+.
T Consensus 221 -~~~DvVLIDTaGr~~~~--------------------~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d 267 (336)
T PRK14974 221 -RGIDVVLIDTAGRMHTD--------------------ANLMDELKKIVRVTKPDLVIFVGDALAGND 267 (336)
T ss_pred -CCCCEEEEECCCccCCc--------------------HHHHHHHHHHHHhhCCceEEEeeccccchh
No 461
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.68 E-value=0.046 Score=60.54 Aligned_cols=86 Identities=15% Similarity=0.192 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhhccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecc--------cccc-cchHHHHHH
Q 003769 194 DDVMSVLNALINKKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLF--------SFRN-QSKGEVEQK 264 (796)
Q Consensus 194 ~ei~~vi~~L~r~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~--------~l~a-~~rge~E~r 264 (796)
.+....+..+.+.+.|+++.|++|+|||++.++|+..+... |. +.+++.+.-. ..+. .+++. -.
T Consensus 131 ~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~--~~---~~rivtiEd~~El~~~~~n~v~l~~~~~--~~ 203 (323)
T PRK13833 131 EAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVAS--AP---EDRLVILEDTAEIQCAAENAVALHTSDT--VD 203 (323)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcC--CC---CceEEEecCCcccccCCCCEEEeccCCC--cC
Confidence 44555666666666789999999999999999999987421 11 2233333210 0011 11111 12
Q ss_pred HHHHHHHHHhccCCCEEEEEcchh
Q 003769 265 LVELSCHVKSYMGRGIVLYLGDLK 288 (796)
Q Consensus 265 l~~l~~~v~~~~~~~~ILfIDElh 288 (796)
+.++++..-. ..|-+++++|+-
T Consensus 204 ~~~lv~~aLR--~~PD~IivGEiR 225 (323)
T PRK13833 204 MARLLKSTMR--LRPDRIIVGEVR 225 (323)
T ss_pred HHHHHHHHhC--CCCCEEEEeecC
Confidence 4455544433 468899999995
No 462
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.66 E-value=0.09 Score=62.58 Aligned_cols=98 Identities=8% Similarity=0.123 Sum_probs=62.6
Q ss_pred ChHHHHHHHHHHhh------ccCceEEEcCCcccHHHHHHHHHHHHH----cCCCCCCCCCceEEEeecccccc---cch
Q 003769 192 DSDDVMSVLNALIN------KKRNTVIVGGNLAAIEGVIRGIIDQFE----RGQVPGDLRYAQFISLPLFSFRN---QSK 258 (796)
Q Consensus 192 r~~ei~~vi~~L~r------~k~n~vLvGepGvGKTaiv~~la~ri~----~~~vp~~L~~~~v~~l~~~~l~a---~~r 258 (796)
|+.|-..+-..+-. ....+.+.|-||+|||+.|..++..+. ++++|. ..++.+|.-.|.. -|-
T Consensus 401 Re~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~----f~yveINgm~l~~~~~~Y~ 476 (767)
T KOG1514|consen 401 RENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPK----FDYVEINGLRLASPREIYE 476 (767)
T ss_pred hhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCC----ccEEEEcceeecCHHHHHH
Confidence 88887776665532 344677889999999999999999654 566663 4567777544432 122
Q ss_pred HH----------HHHHHHHHHHHHH--hccCCCEEEEEcchhhhhhh
Q 003769 259 GE----------VEQKLVELSCHVK--SYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 259 ge----------~E~rl~~l~~~v~--~~~~~~~ILfIDElh~l~~~ 293 (796)
+= +...+..|-.... ......+||.|||++.|+..
T Consensus 477 ~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr 523 (767)
T KOG1514|consen 477 KIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTR 523 (767)
T ss_pred HHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcc
Confidence 21 2233333333322 11145799999999999975
No 463
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=95.66 E-value=0.025 Score=64.92 Aligned_cols=57 Identities=21% Similarity=0.204 Sum_probs=44.3
Q ss_pred ChHHHHHHHHHHhh---ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc
Q 003769 192 DSDDVMSVLNALIN---KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN 255 (796)
Q Consensus 192 r~~ei~~vi~~L~r---~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a 255 (796)
+...++.+++.+.. +..+++|.||+||||+-++++|=+.=-+ +++.||.+|.++|-.
T Consensus 228 ~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R-------~~kPfV~~NCAAlPe 287 (550)
T COG3604 228 RSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPR-------RDKPFVKLNCAALPE 287 (550)
T ss_pred cCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcc-------cCCCceeeeccccch
Confidence 77778888777665 6677888899999999999988664222 467899999887754
No 464
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.66 E-value=0.11 Score=53.45 Aligned_cols=127 Identities=17% Similarity=0.122 Sum_probs=67.1
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHH---cC-CCCCC---CC-CceEEEeecccccc----cchHHHHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFE---RG-QVPGD---LR-YAQFISLPLFSFRN----QSKGEVEQKLVELSCHVK 273 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~---~~-~vp~~---L~-~~~v~~l~~~~l~a----~~rge~E~rl~~l~~~v~ 273 (796)
.++-++|+||+|+|||++.+.++..+. .| .||.. +. ...+..+....-+. .+..+. +++.++++.+.
T Consensus 24 ~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~-~~~~~iL~~~~ 102 (199)
T cd03283 24 KKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAEL-RRLKEIVEKAK 102 (199)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHH-HHHHHHHHhcc
Confidence 345678999999999999999987652 22 23321 11 11122222211111 233444 45666666665
Q ss_pred hccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCcc
Q 003769 274 SYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPS 353 (796)
Q Consensus 274 ~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpa 353 (796)
. .++-+|++||.-.-.... . .......-++.+. ..| ..+|-+|..-+..++++.++.
T Consensus 103 ~--~~p~llllDEp~~glD~~-------~---------~~~l~~~ll~~l~----~~~-~tiiivTH~~~~~~~~~~~~~ 159 (199)
T cd03283 103 K--GEPVLFLLDEIFKGTNSR-------E---------RQAASAAVLKFLK----NKN-TIGIISTHDLELADLLDLDSA 159 (199)
T ss_pred C--CCCeEEEEecccCCCCHH-------H---------HHHHHHHHHHHHH----HCC-CEEEEEcCcHHHHHhhhcCCC
Confidence 3 268999999984222210 0 0011111033443 134 566666666666667776776
Q ss_pred ccc
Q 003769 354 LEN 356 (796)
Q Consensus 354 Ler 356 (796)
...
T Consensus 160 v~~ 162 (199)
T cd03283 160 VRN 162 (199)
T ss_pred eEE
Confidence 654
No 465
>PRK09862 putative ATP-dependent protease; Provisional
Probab=95.66 E-value=0.0096 Score=69.56 Aligned_cols=37 Identities=11% Similarity=0.005 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhccCceEEEcCCcccHHHHHHHHHHH
Q 003769 194 DDVMSVLNALINKKRNTVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 194 ~ei~~vi~~L~r~k~n~vLvGepGvGKTaiv~~la~r 230 (796)
..+.+-+.+-.....+.+|+|+||+|||++++.+..-
T Consensus 197 ~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gl 233 (506)
T PRK09862 197 EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGL 233 (506)
T ss_pred HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhcc
Confidence 3444444433337788999999999999999988753
No 466
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.64 E-value=0.11 Score=60.21 Aligned_cols=79 Identities=8% Similarity=0.054 Sum_probs=51.3
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeeccccccc--chHH------------HHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQ--SKGE------------VEQKLVELSCH 271 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~--~rge------------~E~rl~~l~~~ 271 (796)
...-++|.|+||+|||+++..++..+.+. +.+++.++...-... .|.+ .+..+.++++.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-------g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~ 151 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAA-------GGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILAT 151 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHH
Confidence 45566778999999999999999887632 356666664321110 0000 01234566677
Q ss_pred HHhccCCCEEEEEcchhhhhhh
Q 003769 272 VKSYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 272 v~~~~~~~~ILfIDElh~l~~~ 293 (796)
+++ .++-+++||++..+...
T Consensus 152 i~~--~~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 152 IEE--EKPDLVVIDSIQTMYSP 171 (446)
T ss_pred HHh--hCCCEEEEechhhhccc
Confidence 765 45779999999998753
No 467
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.61 E-value=0.026 Score=60.44 Aligned_cols=43 Identities=9% Similarity=0.269 Sum_probs=35.7
Q ss_pred ChHHHHHHHHHHhhccCceEEEcCCcccHHHHHHHHHHHHHcC
Q 003769 192 DSDDVMSVLNALINKKRNTVIVGGNLAAIEGVIRGIIDQFERG 234 (796)
Q Consensus 192 r~~ei~~vi~~L~r~k~n~vLvGepGvGKTaiv~~la~ri~~~ 234 (796)
-.+++..++..+.+.+.|+++.|++|+|||++...++..+...
T Consensus 112 ~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 112 IPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp CHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred hHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcccc
Confidence 4566777776666678999999999999999999999988644
No 468
>PLN02165 adenylate isopentenyltransferase
Probab=95.60 E-value=0.012 Score=65.11 Aligned_cols=45 Identities=20% Similarity=0.215 Sum_probs=32.5
Q ss_pred CCCCC-ChHHHHHHHHHHhh-ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 187 KSLGR-DSDDVMSVLNALIN-KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 187 g~ldp-r~~ei~~vi~~L~r-~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
.++.| |+++-+.-...+.. ++..++|+||+|+|||+++..||.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 21 RKLPPPRSVVTMTSVAMEQNCKDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred ccCCCCcccccccccccccCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 34555 55544443333444 77789999999999999999999986
No 469
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.014 Score=64.79 Aligned_cols=132 Identities=20% Similarity=0.341 Sum_probs=80.7
Q ss_pred HHHHHHHHhhcCCCCCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCC
Q 003769 567 NLKVLSDALERKAVVPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQS 646 (796)
Q Consensus 567 ~L~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~ 646 (796)
.|....+.|++.+++|=|. -+-.+ ..+--+|.-=.|+.||.| +|||.+||++|+.- | .+||.++||.-
T Consensus 96 gLe~v~~~L~e~VilPlr~--pelF~----~g~Ll~p~kGiLL~GPpG--~GKTmlAKA~Akea-g---a~fInv~~s~l 163 (386)
T KOG0737|consen 96 GLEEVKDALQELVILPLRR--PELFA----KGKLLRPPKGILLYGPPG--TGKTMLAKAIAKEA-G---ANFINVSVSNL 163 (386)
T ss_pred chHHHHHHHHHHHhhcccc--hhhhc----ccccccCCccceecCCCC--chHHHHHHHHHHHc-C---CCcceeecccc
Confidence 5677788888882223221 11111 122233444455779999 99999999999987 4 45999999854
Q ss_pred ccccccccccCCCCCCCCCCchhhHHHHHHhCCC----EEEEEcccccC-----CCChHHHHHHHHHHH---HcceEecC
Q 003769 647 RQDDCRTKKRSRDVELGCCSYIERLGLALNENPH----RVFFMEDLDDH-----KVDSCYCQKGLKQAI---ENGCIALA 714 (796)
Q Consensus 647 ~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~----~Vvl~deieka-----~~~~~~v~~~l~q~~---d~G~l~d~ 714 (796)
+++- | |..+.|+.||---|+ ++|++||||.- --++ +....++.-| =+|-.++.
T Consensus 164 -t~KW----------f---gE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dH-Ea~a~mK~eFM~~WDGl~s~~ 228 (386)
T KOG0737|consen 164 -TSKW----------F---GEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDH-EATAMMKNEFMALWDGLSSKD 228 (386)
T ss_pred -chhh----------H---HHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchH-HHHHHHHHHHHHHhccccCCC
Confidence 2211 2 344678888877666 47999999842 1134 4544444433 24666643
Q ss_pred CCceecCCcEEEEe-eCCC
Q 003769 715 DGEIVPLKDSIIIF-SCDS 732 (796)
Q Consensus 715 ~G~~v~~~n~Iiil-Tsn~ 732 (796)
+- .|+|| .+|.
T Consensus 229 ~~-------rVlVlgATNR 240 (386)
T KOG0737|consen 229 SE-------RVLVLGATNR 240 (386)
T ss_pred Cc-------eEEEEeCCCC
Confidence 32 36666 5554
No 470
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.59 E-value=0.038 Score=56.64 Aligned_cols=78 Identities=8% Similarity=-0.016 Sum_probs=50.4
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc-cc----------------------hHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN-QS----------------------KGEVEQ 263 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a-~~----------------------rge~E~ 263 (796)
..-+.++||||+|||+++..++...... +.+++.++...+.. .. -.+.+.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~-------g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 84 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ-------GKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGV 84 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHH
Confidence 3445578999999999999998876532 45677777654211 00 123333
Q ss_pred HHHHHHHHHHhccCCCEEEEEcchhhhhhh
Q 003769 264 KLVELSCHVKSYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 264 rl~~l~~~v~~~~~~~~ILfIDElh~l~~~ 293 (796)
.+..+.+.+.+ .+.-+|+||-|..+...
T Consensus 85 ~~~~l~~~~~~--~~~~lvVIDSis~l~~~ 112 (209)
T TIGR02237 85 AIQKTSKFIDR--DSASLVVVDSFTALYRL 112 (209)
T ss_pred HHHHHHHHHhh--cCccEEEEeCcHHHhHH
Confidence 45555555554 35679999999988753
No 471
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=95.58 E-value=0.11 Score=58.80 Aligned_cols=143 Identities=14% Similarity=0.151 Sum_probs=88.0
Q ss_pred HhhcCCCCCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCC--CC--cc-
Q 003769 574 ALERKAVVPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSS--QS--RQ- 648 (796)
Q Consensus 574 ~L~~~~~v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms--~~--~~- 648 (796)
.+..- |.||+.. =.++..+--+..++-.|..|+-| +|||++||+||.+|=.-. .+ +++- ++ ..
T Consensus 14 ~pf~a--ivGqd~l----k~aL~l~av~P~iggvLI~G~kG--taKSt~~Rala~LLp~~~---~V-~gc~f~cdP~~P~ 81 (423)
T COG1239 14 LPFTA--IVGQDPL----KLALGLNAVDPQIGGALIAGEKG--TAKSTLARALADLLPEIE---VV-IGCPFNCDPDDPE 81 (423)
T ss_pred cchhh--hcCchHH----HHHHhhhhcccccceeEEecCCC--ccHHHHHHHHHHhCCccc---ee-cCCCCCCCCCChh
Confidence 44556 8999754 34455553366788899999999 999999999999994322 22 2331 10 00
Q ss_pred ---ccc----------ccccc----CCCCCCCCCC-chh--hHHHHHHhCCC------------EEEEEcccccCCCChH
Q 003769 649 ---DDC----------RTKKR----SRDVELGCCS-YIE--RLGLALNENPH------------RVFFMEDLDDHKVDSC 696 (796)
Q Consensus 649 ---~~~----------~~~k~----~~~~~~~~~~-~~~--~L~eavr~~P~------------~Vvl~deieka~~~~~ 696 (796)
+.+ .+.++ ...|...-.+ .+| -+..+++..|. -|+.+|||--. |.
T Consensus 82 ~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL--~d- 158 (423)
T COG1239 82 EMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL--DD- 158 (423)
T ss_pred hhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccc--cH-
Confidence 000 00010 0112100001 111 24455555444 39999999999 99
Q ss_pred HHHHHHHHHHHcc-eEecCCCceecC-CcEEEEeeCC
Q 003769 697 YCQKGLKQAIENG-CIALADGEIVPL-KDSIIIFSCD 731 (796)
Q Consensus 697 ~v~~~l~q~~d~G-~l~d~~G~~v~~-~n~IiilTsn 731 (796)
.+++.||+++++| ...--.|-.+.. -|.++|-|-|
T Consensus 159 ~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmN 195 (423)
T COG1239 159 HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMN 195 (423)
T ss_pred HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecC
Confidence 9999999999999 455567744443 3678888888
No 472
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.58 E-value=0.036 Score=64.72 Aligned_cols=100 Identities=12% Similarity=0.154 Sum_probs=68.8
Q ss_pred cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEec-CCCCccccccccccCCCCCCCCCCchhhHHHHHHhCC
Q 003769 601 KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLS-SSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENP 679 (796)
Q Consensus 601 ~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~d-ms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P 679 (796)
.++.|.++|.|||| .|||++..++-..+-... .+++.+. --||...... ...-.+ -.|.+|..-|..++|.+|
T Consensus 239 ~~~~GlilitGptG--SGKTTtL~a~L~~l~~~~-~~iiTiEDpvE~~~~~~~--q~~v~~-~~g~~f~~~lr~~LR~dP 312 (486)
T TIGR02533 239 RRPHGIILVTGPTG--SGKTTTLYAALSRLNTPE-RNILTVEDPVEYQIEGIG--QIQVNP-KIGLTFAAGLRAILRQDP 312 (486)
T ss_pred hcCCCEEEEEcCCC--CCHHHHHHHHHhccCCCC-CcEEEEcCCeeeecCCCc--eEEEcc-ccCccHHHHHHHHHhcCC
Confidence 35778999999999 999999998766664444 5666663 2244211110 000011 224567788999999999
Q ss_pred CEEEEEcccccCCCChHHHHHHHHHHHHcceEe
Q 003769 680 HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIA 712 (796)
Q Consensus 680 ~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~ 712 (796)
. ||++.||-.. +.....+++..+|.+.
T Consensus 313 D-vI~vGEiRd~-----eta~~a~~aa~tGHlv 339 (486)
T TIGR02533 313 D-IIMVGEIRDL-----ETAQIAIQASLTGHLV 339 (486)
T ss_pred C-EEEEeCCCCH-----HHHHHHHHHHHhCCcE
Confidence 5 7889999866 6777889999999874
No 473
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=95.58 E-value=0.012 Score=61.62 Aligned_cols=78 Identities=12% Similarity=0.097 Sum_probs=45.6
Q ss_pred hccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccc----------cccchHHHHHHHHHHHHHHHh
Q 003769 205 NKKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSF----------RNQSKGEVEQKLVELSCHVKS 274 (796)
Q Consensus 205 r~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l----------~a~~rge~E~rl~~l~~~v~~ 274 (796)
+.+++++++|+||+|||++++.++.+ .-++..|.++- ....+....+.+.+.+.++..
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~~------------~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~ 77 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPGK------------TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNI 77 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCCC------------CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHh
Confidence 34677899999999999999988531 23344443210 000111122344444555543
Q ss_pred ccCCCEEEEEcchhhhhhhh
Q 003769 275 YMGRGIVLYLGDLKWVAEFW 294 (796)
Q Consensus 275 ~~~~~~ILfIDElh~l~~~~ 294 (796)
....--+||||.+.+|-..|
T Consensus 78 ~~~~ydtVVIDsI~~l~~~~ 97 (220)
T TIGR01618 78 QAVKYDNIVIDNISALQNLW 97 (220)
T ss_pred ccccCCEEEEecHHHHHHHH
Confidence 21234689999999987744
No 474
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=95.57 E-value=0.041 Score=63.40 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=38.4
Q ss_pred ChHHHHHHHHHHhhccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccc
Q 003769 192 DSDDVMSVLNALINKKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSF 253 (796)
Q Consensus 192 r~~ei~~vi~~L~r~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l 253 (796)
...++.+.+..++...-++++.|++|+||+++++.+...-.+ .+..|+.+|.+.+
T Consensus 142 ~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~-------~~~~~~~~~c~~~ 196 (463)
T TIGR01818 142 AMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPR-------ANGPFIALNMAAI 196 (463)
T ss_pred HHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCC-------CCCCeEEEeCCCC
Confidence 444455555444446667888999999999999888764221 2467999998766
No 475
>PRK03839 putative kinase; Provisional
Probab=95.56 E-value=0.011 Score=59.22 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=21.4
Q ss_pred ceEEEcCCcccHHHHHHHHHHHH
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri 231 (796)
.++|+|+||+||||+++.||+++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999986
No 476
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.54 E-value=0.03 Score=60.30 Aligned_cols=28 Identities=4% Similarity=0.100 Sum_probs=24.3
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFER 233 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~ 233 (796)
.+..+++.|++|+|||++...+...+..
T Consensus 79 ~~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 5667889999999999999999888753
No 477
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.54 E-value=0.028 Score=62.80 Aligned_cols=70 Identities=13% Similarity=0.147 Sum_probs=43.7
Q ss_pred hHHHHHHHHHH---hh----ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHH
Q 003769 193 SDDVMSVLNAL---IN----KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKL 265 (796)
Q Consensus 193 ~~ei~~vi~~L---~r----~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl 265 (796)
..+.|+...++ .+ ..+.++|.||||+||||++-++|+.+-. +..|+.++.+.+.+.-.. |.
T Consensus 29 Q~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~--------~~PF~~isgSEiyS~e~k----KT 96 (398)
T PF06068_consen 29 QEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGE--------DVPFVSISGSEIYSSEVK----KT 96 (398)
T ss_dssp -HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTT--------TS-EEEEEGGGG-BTTC-----HH
T ss_pred hHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCC--------CCCeeEcccceeeecccC----ch
Confidence 44555544443 33 3588999999999999999999998752 466899988877662111 23
Q ss_pred HHHHHHHHh
Q 003769 266 VELSCHVKS 274 (796)
Q Consensus 266 ~~l~~~v~~ 274 (796)
.-|.+.++.
T Consensus 97 E~L~qa~Rr 105 (398)
T PF06068_consen 97 EALTQAFRR 105 (398)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 345555554
No 478
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.52 E-value=0.016 Score=58.03 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=22.2
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
.+.++|.|+||+|||++++.|+.+.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4568899999999999999999875
No 479
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.51 E-value=0.03 Score=53.42 Aligned_cols=22 Identities=14% Similarity=0.099 Sum_probs=20.0
Q ss_pred eEEEcCCcccHHHHHHHHHHHH
Q 003769 210 TVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 210 ~vLvGepGvGKTaiv~~la~ri 231 (796)
++++|+||+|||++++.|+.+.
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999875
No 480
>PRK13948 shikimate kinase; Provisional
Probab=95.51 E-value=0.029 Score=57.10 Aligned_cols=34 Identities=9% Similarity=-0.018 Sum_probs=30.0
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEee
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLP 249 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~ 249 (796)
.+.|++|+|.+|+|||++.+.||+++ +..|+.+|
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l----------g~~~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL----------MLHFIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc----------CCCEEECC
Confidence 56899999999999999999999976 46788777
No 481
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.024 Score=62.23 Aligned_cols=56 Identities=20% Similarity=0.263 Sum_probs=46.6
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc-cchH-HHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN-QSKG-EVEQKLVELSCH 271 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a-~~rg-e~E~rl~~l~~~ 271 (796)
.++|++.+||.|||||-|++-||.- .+..|+.+....|.. .|.| ++|.-+++|.+.
T Consensus 49 ~PKNILMIGpTGVGKTEIARRLAkl----------~~aPFiKVEATKfTEVGYVGrDVesivRDLve~ 106 (444)
T COG1220 49 TPKNILMIGPTGVGKTEIARRLAKL----------AGAPFIKVEATKFTEVGYVGRDVESIIRDLVEI 106 (444)
T ss_pred CccceEEECCCCCcHHHHHHHHHHH----------hCCCeEEEEeeeeeecccccccHHHHHHHHHHH
Confidence 7999999999999999999999973 467899999888877 6777 477777777654
No 482
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.47 E-value=0.043 Score=46.68 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=20.4
Q ss_pred eEEEcCCcccHHHHHHHHHHHH
Q 003769 210 TVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 210 ~vLvGepGvGKTaiv~~la~ri 231 (796)
+++.|+||+|||++++.|+.++
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999987
No 483
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.47 E-value=0.029 Score=64.79 Aligned_cols=89 Identities=11% Similarity=0.167 Sum_probs=51.3
Q ss_pred CeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCEEE
Q 003769 604 QTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHRVF 683 (796)
Q Consensus 604 ~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vv 683 (796)
.-+++|.||+| +|||.|+++++..+.... ..++.+++.++. .... .. + ..+..+.+-+..+ -..|+
T Consensus 141 ~npl~L~G~~G--~GKTHLl~Ai~~~l~~~~-~~v~yi~~~~f~-~~~~-----~~--l-~~~~~~~f~~~~~--~~dvL 206 (445)
T PRK12422 141 FNPIYLFGPEG--SGKTHLMQAAVHALRESG-GKILYVRSELFT-EHLV-----SA--I-RSGEMQRFRQFYR--NVDAL 206 (445)
T ss_pred CceEEEEcCCC--CCHHHHHHHHHHHHHHcC-CCEEEeeHHHHH-HHHH-----HH--H-hcchHHHHHHHcc--cCCEE
Confidence 35799999999 999999999999886433 456666654331 1110 00 0 0111222333232 35699
Q ss_pred EEcccccCCCChHHHHHHHHHHHH
Q 003769 684 FMEDLDDHKVDSCYCQKGLKQAIE 707 (796)
Q Consensus 684 l~deieka~~~~~~v~~~l~q~~d 707 (796)
+||||+.-.-.. ..+..|+..|+
T Consensus 207 iIDDiq~l~~k~-~~qeelf~l~N 229 (445)
T PRK12422 207 FIEDIEVFSGKG-ATQEEFFHTFN 229 (445)
T ss_pred EEcchhhhcCCh-hhHHHHHHHHH
Confidence 999998642223 44555555554
No 484
>PRK04296 thymidine kinase; Provisional
Probab=95.47 E-value=0.067 Score=54.60 Aligned_cols=109 Identities=9% Similarity=-0.051 Sum_probs=60.8
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecC--CCCccccccccccCCCCCCCC--CCchhhHHHHH--HhCC
Q 003769 606 WLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSS--SQSRQDDCRTKKRSRDVELGC--CSYIERLGLAL--NENP 679 (796)
Q Consensus 606 ~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dm--s~~~~~~~~~~k~~~~~~~~~--~~~~~~L~eav--r~~P 679 (796)
..++.||.| .|||++|..++..+-+.. ...+-+.- ... ..........+.. ... ......+.+.+ ..+.
T Consensus 4 i~litG~~G--sGKTT~~l~~~~~~~~~g-~~v~i~k~~~d~~-~~~~~i~~~lg~~-~~~~~~~~~~~~~~~~~~~~~~ 78 (190)
T PRK04296 4 LEFIYGAMN--SGKSTELLQRAYNYEERG-MKVLVFKPAIDDR-YGEGKVVSRIGLS-REAIPVSSDTDIFELIEEEGEK 78 (190)
T ss_pred EEEEECCCC--CHHHHHHHHHHHHHHHcC-CeEEEEecccccc-ccCCcEecCCCCc-ccceEeCChHHHHHHHHhhCCC
Confidence 357899999 999999988887765544 44444421 111 1122122222210 000 01123344444 3467
Q ss_pred CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecC
Q 003769 680 HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPL 721 (796)
Q Consensus 680 ~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~ 721 (796)
+.||++||+.-- +..++..++..+-+.|.-.-..|+.-||
T Consensus 79 ~dvviIDEaq~l--~~~~v~~l~~~l~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 79 IDCVLIDEAQFL--DKEQVVQLAEVLDDLGIPVICYGLDTDF 118 (190)
T ss_pred CCEEEEEccccC--CHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 899999999877 7724777776666777444434444333
No 485
>PRK13946 shikimate kinase; Provisional
Probab=95.45 E-value=0.026 Score=57.17 Aligned_cols=35 Identities=26% Similarity=0.190 Sum_probs=29.9
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeec
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPL 250 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~ 250 (796)
.+++++|+|.||+|||++++.||+++ |..|+..|.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~L----------g~~~id~D~ 43 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATML----------GLPFLDADT 43 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc----------CCCeECcCH
Confidence 57899999999999999999999986 456777663
No 486
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.45 E-value=0.021 Score=55.36 Aligned_cols=40 Identities=10% Similarity=0.138 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHhh--cc-CceEEEcCCcccHHHHHHHHHHHHH
Q 003769 193 SDDVMSVLNALIN--KK-RNTVIVGGNLAAIEGVIRGIIDQFE 232 (796)
Q Consensus 193 ~~ei~~vi~~L~r--~k-~n~vLvGepGvGKTaiv~~la~ri~ 232 (796)
.++..++.+.|++ .+ ..++|.|+.|+|||++++++++.+.
T Consensus 5 ~~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 5 EKAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 5778888888887 33 4566889999999999999999863
No 487
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.44 E-value=0.027 Score=51.99 Aligned_cols=25 Identities=8% Similarity=0.041 Sum_probs=22.3
Q ss_pred eEEEcCCcccHHHHHHHHHHHHHcC
Q 003769 210 TVIVGGNLAAIEGVIRGIIDQFERG 234 (796)
Q Consensus 210 ~vLvGepGvGKTaiv~~la~ri~~~ 234 (796)
+.|.|+||+|||.+++.|+..+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4689999999999999999988754
No 488
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.42 E-value=0.2 Score=49.80 Aligned_cols=95 Identities=8% Similarity=0.082 Sum_probs=52.7
Q ss_pred HHHHHHHH-Hhh-ccCc-eEEEcCCcccHHHHHHHHHHHHHcCCCCC-------------CCCCceEEEeeccccc-ccc
Q 003769 195 DVMSVLNA-LIN-KKRN-TVIVGGNLAAIEGVIRGIIDQFERGQVPG-------------DLRYAQFISLPLFSFR-NQS 257 (796)
Q Consensus 195 ei~~vi~~-L~r-~k~n-~vLvGepGvGKTaiv~~la~ri~~~~vp~-------------~L~~~~v~~l~~~~l~-a~~ 257 (796)
++...+.. +.. +-.+ .+|.||+|+||++++..+|+.|...+... ......++.++-..-. ...
T Consensus 4 ~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~ 83 (162)
T PF13177_consen 4 EIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIK 83 (162)
T ss_dssp HHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBS
T ss_pred HHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhh
Confidence 33444443 444 4455 58889999999999999999887654321 1223445555433221 111
Q ss_pred hHHHHHHHHHHHHHHHhcc--CCCEEEEEcchhhhhhh
Q 003769 258 KGEVEQKLVELSCHVKSYM--GRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 258 rge~E~rl~~l~~~v~~~~--~~~~ILfIDElh~l~~~ 293 (796)
. +.++++.+.+.... ++.=|++|||++.+...
T Consensus 84 i----~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~ 117 (162)
T PF13177_consen 84 I----DQIREIIEFLSLSPSEGKYKVIIIDEADKLTEE 117 (162)
T ss_dssp H----HHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HH
T ss_pred H----HHHHHHHHHHHHHHhcCCceEEEeehHhhhhHH
Confidence 2 23445555554321 34569999999988654
No 489
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.39 E-value=0.013 Score=56.75 Aligned_cols=23 Identities=13% Similarity=0.432 Sum_probs=20.3
Q ss_pred eEEEcCCcccHHHHHHHHHHHHH
Q 003769 210 TVIVGGNLAAIEGVIRGIIDQFE 232 (796)
Q Consensus 210 ~vLvGepGvGKTaiv~~la~ri~ 232 (796)
++|+||+|+|||++++.|++.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 57899999999999999998753
No 490
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.39 E-value=0.092 Score=60.28 Aligned_cols=87 Identities=11% Similarity=0.130 Sum_probs=48.9
Q ss_pred CCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCcccccc----ccccCCCCCCC---CCCchhhH---
Q 003769 602 KEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCR----TKKRSRDVELG---CCSYIERL--- 671 (796)
Q Consensus 602 ~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~----~~k~~~~~~~~---~~~~~~~L--- 671 (796)
++.+.++|+||+| +|||++|..||.++-... ....-++...|.....- ..+..+.|-|. +.+.+...
T Consensus 98 ~~~~vi~lvG~~G--vGKTTtaaKLA~~l~~~G-~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~ 174 (429)
T TIGR01425 98 GKQNVIMFVGLQG--SGKTTTCTKLAYYYQRKG-FKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEG 174 (429)
T ss_pred CCCeEEEEECCCC--CCHHHHHHHHHHHHHHCC-CCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHH
Confidence 4468999999999 999999999998774332 33444454434211110 01122222111 11212222
Q ss_pred HHHHHhCCCEEEEEcccccC
Q 003769 672 GLALNENPHRVFFMEDLDDH 691 (796)
Q Consensus 672 ~eavr~~P~~Vvl~deieka 691 (796)
.+..+.+.|.|||+|=-=..
T Consensus 175 l~~~~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 175 VEKFKKENFDIIIVDTSGRH 194 (429)
T ss_pred HHHHHhCCCCEEEEECCCCC
Confidence 23345578999999976544
No 491
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.36 E-value=0.09 Score=57.16 Aligned_cols=79 Identities=13% Similarity=0.099 Sum_probs=44.6
Q ss_pred CeEEEEecCCCCCchHHHHHHHHHHHHc---CCCCCceEEecCCCCcccccc----ccccCCCCCCCCCCchhhHHHHHH
Q 003769 604 QTWLLFLGADDHNHGKEKIAREIAKVVF---GSHSNNFTNLSSSQSRQDDCR----TKKRSRDVELGCCSYIERLGLALN 676 (796)
Q Consensus 604 ~~~~lf~Gp~g~~vGKt~lAk~LA~~~f---g~~~~~~i~~dms~~~~~~~~----~~k~~~~~~~~~~~~~~~L~eavr 676 (796)
...++|+||+| +|||+++..||..+- |..+-.+|.+|. |...... ..+..+-|-+. ......|.++++
T Consensus 194 ~~vi~~vGptG--vGKTTt~~kLa~~~~~~~g~~~V~li~~D~--~r~~a~eql~~~~~~~~~p~~~-~~~~~~l~~~l~ 268 (282)
T TIGR03499 194 GGVIALVGPTG--VGKTTTLAKLAARFVLEHGNKKVALITTDT--YRIGAVEQLKTYAKILGVPVKV-ARDPKELRKALD 268 (282)
T ss_pred CeEEEEECCCC--CCHHHHHHHHHHHHHHHcCCCeEEEEECCc--cchhHHHHHHHHHHHhCCceec-cCCHHHHHHHHH
Confidence 46899999999 999999999997763 433134555553 3211110 01111112111 111235666666
Q ss_pred hCC-CEEEEEcc
Q 003769 677 ENP-HRVFFMED 687 (796)
Q Consensus 677 ~~P-~~Vvl~de 687 (796)
+.. +.+||+|.
T Consensus 269 ~~~~~d~vliDt 280 (282)
T TIGR03499 269 RLRDKDLILIDT 280 (282)
T ss_pred HccCCCEEEEeC
Confidence 533 78999985
No 492
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.034 Score=59.94 Aligned_cols=110 Identities=15% Similarity=0.205 Sum_probs=73.9
Q ss_pred cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCC
Q 003769 601 KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPH 680 (796)
Q Consensus 601 ~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~ 680 (796)
+.|-|. ++.|++| +|||-|||++|..- +.-|+|+-.|+- +-| +. .-|.-.+-+|...-.++--
T Consensus 217 kpPKGV-IlyG~PG--TGKTLLAKAVANqT----SATFlRvvGseL------iQk---yl-GdGpklvRqlF~vA~e~ap 279 (440)
T KOG0726|consen 217 KPPKGV-ILYGEPG--TGKTLLAKAVANQT----SATFLRVVGSEL------IQK---YL-GDGPKLVRELFRVAEEHAP 279 (440)
T ss_pred CCCCee-EEeCCCC--CchhHHHHHHhccc----chhhhhhhhHHH------HHH---Hh-ccchHHHHHHHHHHHhcCC
Confidence 344454 5899999 99999999999754 256788776633 111 01 1233455788888889999
Q ss_pred EEEEEcccccCC---------CChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCCCC
Q 003769 681 RVFFMEDLDDHK---------VDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDSLD 734 (796)
Q Consensus 681 ~Vvl~deieka~---------~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~~~ 734 (796)
|+||+||||--| -.. ++|..+|..+..=-=-|+. .|.=|||.+|-.+
T Consensus 280 SIvFiDEIdAiGtKRyds~Sgger-EiQrtmLELLNQldGFdsr------gDvKvimATnrie 335 (440)
T KOG0726|consen 280 SIVFIDEIDAIGTKRYDSNSGGER-EIQRTMLELLNQLDGFDSR------GDVKVIMATNRIE 335 (440)
T ss_pred ceEEeehhhhhccccccCCCccHH-HHHHHHHHHHHhccCcccc------CCeEEEEeccccc
Confidence 999999999431 135 7888888877542111223 3556999998653
No 493
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.35 E-value=0.043 Score=59.36 Aligned_cols=78 Identities=10% Similarity=0.127 Sum_probs=40.4
Q ss_pred eEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc---cch-HHHHHHHHH-HHHHHHhccCCCEEEEE
Q 003769 210 TVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN---QSK-GEVEQKLVE-LSCHVKSYMGRGIVLYL 284 (796)
Q Consensus 210 ~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a---~~r-ge~E~rl~~-l~~~v~~~~~~~~ILfI 284 (796)
+||.|-||+|||++++.|++.+... +.+++.++-.++.- .|. ..-|+.++. +...|+...+...|+++
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~-------~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~ 76 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEK-------GKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVIL 76 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHT-------T--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhc-------CCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEE
Confidence 5788999999999999999998873 45566665444431 221 111222221 22222221145678899
Q ss_pred cchhhhhhhh
Q 003769 285 GDLKWVAEFW 294 (796)
Q Consensus 285 DElh~l~~~~ 294 (796)
|+.-++-+.|
T Consensus 77 Dd~nYiKg~R 86 (270)
T PF08433_consen 77 DDNNYIKGMR 86 (270)
T ss_dssp -S---SHHHH
T ss_pred eCCchHHHHH
Confidence 9999888775
No 494
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.34 E-value=0.15 Score=58.76 Aligned_cols=113 Identities=17% Similarity=0.128 Sum_probs=63.4
Q ss_pred eEEEEecCCCCCchHHHHHHHHHHHHc--CCCCCceEEecCCCCccccccc----cccCCCCCCCCCCchhhHHHHHHh-
Q 003769 605 TWLLFLGADDHNHGKEKIAREIAKVVF--GSHSNNFTNLSSSQSRQDDCRT----KKRSRDVELGCCSYIERLGLALNE- 677 (796)
Q Consensus 605 ~~~lf~Gp~g~~vGKt~lAk~LA~~~f--g~~~~~~i~~dms~~~~~~~~~----~k~~~~~~~~~~~~~~~L~eavr~- 677 (796)
..++|+||+| +|||+++..||..+- ... ....-+|+..|....... .+..+-|-+... ....|..++++
T Consensus 222 ~~i~~vGptG--vGKTTt~~kLA~~~~~~~~g-~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~-~~~~l~~~l~~~ 297 (424)
T PRK05703 222 GVVALVGPTG--VGKTTTLAKLAARYALLYGK-KKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVY-DPKELAKALEQL 297 (424)
T ss_pred cEEEEECCCC--CCHHHHHHHHHHHHHHhcCC-CeEEEEECCccHHHHHHHHHHHHHHhCCceEccC-CHHhHHHHHHHh
Confidence 5799999999 999999999986653 222 334445555442111100 011111211111 12456666654
Q ss_pred CCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCC
Q 003769 678 NPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 678 ~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn 731 (796)
..+.+||+|..=....+. .-..-|.+.++. .+.. -..++||+++
T Consensus 298 ~~~DlVlIDt~G~~~~d~-~~~~~L~~ll~~------~~~~---~~~~LVl~a~ 341 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDK-RLIEELKALIEF------SGEP---IDVYLVLSAT 341 (424)
T ss_pred CCCCEEEEeCCCCCCCCH-HHHHHHHHHHhc------cCCC---CeEEEEEECC
Confidence 468999999553321166 566667777772 1111 3567778775
No 495
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.33 E-value=0.014 Score=55.77 Aligned_cols=22 Identities=5% Similarity=0.188 Sum_probs=19.7
Q ss_pred eEEEcCCcccHHHHHHHHHHHH
Q 003769 210 TVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 210 ~vLvGepGvGKTaiv~~la~ri 231 (796)
++++|+||+|||++++.|+.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 5789999999999999999764
No 496
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.33 E-value=0.053 Score=64.54 Aligned_cols=100 Identities=13% Similarity=0.144 Sum_probs=69.1
Q ss_pred cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEe-cCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCC
Q 003769 601 KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNL-SSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENP 679 (796)
Q Consensus 601 ~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~-dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P 679 (796)
.++.|.+||+|||| .|||++..++.+.+-... .+++.+ |--||...... ...- ..-.|.+|..-|-.++|.+|
T Consensus 313 ~~~~Glilv~G~tG--SGKTTtl~a~l~~~~~~~-~~i~tiEdpvE~~~~~~~--q~~v-~~~~g~~~~~~l~~~LR~dP 386 (564)
T TIGR02538 313 HKPQGMVLVTGPTG--SGKTVSLYTALNILNTEE-VNISTAEDPVEINLPGIN--QVNV-NPKIGLTFAAALRSFLRQDP 386 (564)
T ss_pred HhcCCeEEEECCCC--CCHHHHHHHHHHhhCCCC-ceEEEecCCceecCCCce--EEEe-ccccCCCHHHHHHHHhccCC
Confidence 34679999999999 999999988888775444 456654 33344211110 0000 11234577788999999999
Q ss_pred CEEEEEcccccCCCChHHHHHHHHHHHHcceEe
Q 003769 680 HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIA 712 (796)
Q Consensus 680 ~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~ 712 (796)
. ||++.||-.. +.....+++..+|.+.
T Consensus 387 D-vI~vGEiRd~-----eta~~a~~aa~tGHlv 413 (564)
T TIGR02538 387 D-IIMVGEIRDL-----ETAEIAIKAAQTGHLV 413 (564)
T ss_pred C-EEEeCCCCCH-----HHHHHHHHHHHcCCcE
Confidence 5 7789999865 7777889999999874
No 497
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=95.30 E-value=0.052 Score=61.98 Aligned_cols=88 Identities=16% Similarity=0.201 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhh---ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHH---
Q 003769 194 DDVMSVLNALIN---KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVE--- 267 (796)
Q Consensus 194 ~ei~~vi~~L~r---~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~--- 267 (796)
..+..+++-+.. ....++++|++|+||+++++.+-..-.+ .+..|+.+|.+.+.. ..++..|-.
T Consensus 146 ~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~-------~~~~~i~~~c~~~~~---~~~~~~lfg~~~ 215 (441)
T PRK10365 146 PAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSAR-------SEKPLVTLNCAALNE---SLLESELFGHEK 215 (441)
T ss_pred HHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCC-------CCCCeeeeeCCCCCH---HHHHHHhcCCCC
Confidence 344444444333 6677888999999999999988653221 346799999876532 222221100
Q ss_pred ---------HHHHHHhccCCCEEEEEcchhhhhhh
Q 003769 268 ---------LSCHVKSYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 268 ---------l~~~v~~~~~~~~ILfIDElh~l~~~ 293 (796)
-...+.. ..+.+|||||++.|-..
T Consensus 216 ~~~~~~~~~~~g~~~~--a~~gtl~ldei~~l~~~ 248 (441)
T PRK10365 216 GAFTGADKRREGRFVE--ADGGTLFLDEIGDISPM 248 (441)
T ss_pred CCcCCCCcCCCCceeE--CCCCEEEEeccccCCHH
Confidence 0000112 23567999999998764
No 498
>PRK10436 hypothetical protein; Provisional
Probab=95.28 E-value=0.062 Score=62.35 Aligned_cols=100 Identities=13% Similarity=0.176 Sum_probs=68.5
Q ss_pred cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEe-cCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCC
Q 003769 601 KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNL-SSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENP 679 (796)
Q Consensus 601 ~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~-dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P 679 (796)
.+|.|.+||.|||| .|||++..++-+.+-... .+++.+ |--||..+.. ....-.+ -.|.+|..-|-.++|..|
T Consensus 215 ~~~~GliLvtGpTG--SGKTTtL~a~l~~~~~~~-~~i~TiEDPvE~~l~gi--~Q~~v~~-~~g~~f~~~lr~~LR~dP 288 (462)
T PRK10436 215 QQPQGLILVTGPTG--SGKTVTLYSALQTLNTAQ-INICSVEDPVEIPLAGI--NQTQIHP-KAGLTFQRVLRALLRQDP 288 (462)
T ss_pred HhcCCeEEEECCCC--CChHHHHHHHHHhhCCCC-CEEEEecCCccccCCCc--ceEeeCC-ccCcCHHHHHHHHhcCCC
Confidence 45789999999999 999999888777765444 556655 3334421111 0000011 134567778888899888
Q ss_pred CEEEEEcccccCCCChHHHHHHHHHHHHcceEe
Q 003769 680 HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIA 712 (796)
Q Consensus 680 ~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~ 712 (796)
. ||++.||-.. +.....+++..+|.+.
T Consensus 289 D-vI~vGEIRD~-----eta~~al~AA~TGHlV 315 (462)
T PRK10436 289 D-VIMVGEIRDG-----ETAEIAIKAAQTGHLV 315 (462)
T ss_pred C-EEEECCCCCH-----HHHHHHHHHHHcCCcE
Confidence 5 7889999876 6777888898899875
No 499
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.27 E-value=0.056 Score=56.77 Aligned_cols=121 Identities=13% Similarity=0.284 Sum_probs=79.5
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCC-CCCceEEecCCCCccccccccccCCC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGS-HSNNFTNLSSSQSRQDDCRTKKRSRD 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~-~~~~~i~~dms~~~~~~~~~~k~~~~ 659 (796)
|+|-+++|+.+.-- .+. ...--++|.||+| +|||+.++.||+.+.|. +|+.+.-++-|+.. +--.+.-.
T Consensus 29 IVGNe~tv~rl~vi---a~~-gnmP~liisGpPG--~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR-GIDvVRn~--- 98 (333)
T KOG0991|consen 29 IVGNEDTVERLSVI---AKE-GNMPNLIISGPPG--TGKTTSILCLARELLGDSYKEAVLELNASDER-GIDVVRNK--- 98 (333)
T ss_pred hhCCHHHHHHHHHH---HHc-CCCCceEeeCCCC--CchhhHHHHHHHHHhChhhhhHhhhccCcccc-ccHHHHHH---
Confidence 78888887765422 222 2233689999999 99999999999999984 45778888877442 10000000
Q ss_pred CCCCCCCchhhHH-HHHH--hCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCCC
Q 003769 660 VELGCCSYIERLG-LALN--ENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDSL 733 (796)
Q Consensus 660 ~~~~~~~~~~~L~-eavr--~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~~ 733 (796)
+-.++ ..|. .--|.+|+|||.|-. .. .-|..|.+.|| +--+-|=|.|.||.+
T Consensus 99 --------IK~FAQ~kv~lp~grhKIiILDEADSM--T~-gAQQAlRRtME-----------iyS~ttRFalaCN~s 153 (333)
T KOG0991|consen 99 --------IKMFAQKKVTLPPGRHKIIILDEADSM--TA-GAQQALRRTME-----------IYSNTTRFALACNQS 153 (333)
T ss_pred --------HHHHHHhhccCCCCceeEEEeeccchh--hh-HHHHHHHHHHH-----------HHcccchhhhhhcch
Confidence 00111 1111 134889999999988 77 88888888875 444566688999864
No 500
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.042 Score=58.11 Aligned_cols=109 Identities=22% Similarity=0.309 Sum_probs=76.4
Q ss_pred cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCC--CchhhHHHHHHhC
Q 003769 601 KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCC--SYIERLGLALNEN 678 (796)
Q Consensus 601 ~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~--~~~~~L~eavr~~ 678 (796)
..|-|.+ +.||.| .|||-||++.|-.- . -.|||+..|+- +-| |.|. -.+..|.=.-|++
T Consensus 179 aQPKGvl-Lygppg--tGktLlaraVahht---~-c~firvsgsel------vqk------~igegsrmvrelfvmareh 239 (404)
T KOG0728|consen 179 AQPKGVL-LYGPPG--TGKTLLARAVAHHT---D-CTFIRVSGSEL------VQK------YIGEGSRMVRELFVMAREH 239 (404)
T ss_pred CCCcceE-EecCCC--CchhHHHHHHHhhc---c-eEEEEechHHH------HHH------HhhhhHHHHHHHHHHHHhc
Confidence 4566665 779999 99999999999764 2 45899877643 112 2222 2345677778999
Q ss_pred CCEEEEEcccccCC---------CChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCCCCC
Q 003769 679 PHRVFFMEDLDDHK---------VDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDSLDS 735 (796)
Q Consensus 679 P~~Vvl~deieka~---------~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~~~~ 735 (796)
--|+||+||||--| -|. +||..++..+..= +|= -.-+|.=+||.+|-.|.
T Consensus 240 apsiifmdeidsigs~r~e~~~ggds-evqrtmlellnql-----dgf-eatknikvimatnridi 298 (404)
T KOG0728|consen 240 APSIIFMDEIDSIGSSRVESGSGGDS-EVQRTMLELLNQL-----DGF-EATKNIKVIMATNRIDI 298 (404)
T ss_pred CCceEeeecccccccccccCCCCccH-HHHHHHHHHHHhc-----ccc-ccccceEEEEecccccc
Confidence 99999999999542 266 9999999887531 221 12367779999987543
Done!