Query 003769
Match_columns 796
No_of_seqs 322 out of 1900
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 03:26:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003769.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003769hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qvr_A CLPB protein; coiled co 100.0 1E-69 3.5E-74 660.1 42.7 616 7-732 1-710 (854)
2 3pxi_A Negative regulator of g 100.0 1E-67 3.6E-72 634.9 39.7 564 7-732 1-629 (758)
3 1r6b_X CLPA protein; AAA+, N-t 100.0 1.8E-66 6E-71 623.8 39.6 556 12-732 2-607 (758)
4 3pxg_A Negative regulator of g 100.0 6.4E-45 2.2E-49 414.8 26.5 298 7-371 1-328 (468)
5 3fh2_A Probable ATP-dependent 99.9 7.8E-22 2.7E-26 190.4 16.5 140 7-175 2-143 (146)
6 3fes_A ATP-dependent CLP endop 99.9 9.2E-22 3.1E-26 189.8 13.9 139 7-175 3-143 (145)
7 1khy_A CLPB protein; alpha hel 99.9 2.6E-21 8.8E-26 186.2 15.8 140 7-173 1-141 (148)
8 2y1q_A CLPC N-domain, negative 99.9 3.2E-21 1.1E-25 186.1 15.0 139 7-175 1-141 (150)
9 4fcw_A Chaperone protein CLPB; 99.8 1.9E-20 6.6E-25 199.6 16.5 160 564-732 4-169 (311)
10 3zri_A CLPB protein, CLPV; cha 99.8 1.2E-19 4E-24 180.2 14.0 139 5-173 18-161 (171)
11 3cf2_A TER ATPase, transitiona 99.8 7.3E-19 2.5E-23 210.5 21.1 151 192-371 212-375 (806)
12 1k6k_A ATP-dependent CLP prote 99.8 6.6E-19 2.3E-23 168.5 13.9 135 12-174 2-140 (143)
13 2p65_A Hypothetical protein PF 99.7 6.8E-17 2.3E-21 157.4 13.9 155 192-367 27-185 (187)
14 1ypw_A Transitional endoplasmi 99.7 4.8E-17 1.6E-21 196.6 13.4 136 206-370 237-374 (806)
15 1jbk_A CLPB protein; beta barr 99.7 1.2E-16 4E-21 155.6 12.7 158 192-370 27-187 (195)
16 4b4t_J 26S protease regulatory 99.6 9.6E-15 3.3E-19 162.4 15.3 137 206-371 181-322 (405)
17 4b4t_I 26S protease regulatory 99.5 2.6E-14 8.9E-19 159.6 14.0 137 206-371 215-356 (437)
18 4b4t_M 26S protease regulatory 99.5 2.7E-14 9.3E-19 160.6 12.5 137 206-371 214-355 (434)
19 4b4t_K 26S protease regulatory 99.5 6.5E-14 2.2E-18 157.4 13.8 135 206-366 205-341 (428)
20 4b4t_H 26S protease regulatory 99.5 8E-14 2.7E-18 157.0 14.2 137 206-371 242-383 (467)
21 4b4t_L 26S protease subunit RP 99.5 6.4E-14 2.2E-18 157.7 13.0 137 206-371 214-355 (437)
22 1um8_A ATP-dependent CLP prote 99.5 1.8E-13 6.1E-18 150.7 12.1 144 567-732 11-203 (376)
23 3hws_A ATP-dependent CLP prote 99.5 1.5E-14 5.3E-19 158.6 3.4 142 568-732 6-182 (363)
24 3cf2_A TER ATPase, transitiona 99.4 1.9E-13 6.4E-18 163.9 7.7 140 206-371 510-651 (806)
25 1ofh_A ATP-dependent HSL prote 99.4 2.5E-12 8.7E-17 136.1 12.0 141 568-731 6-176 (310)
26 1xwi_A SKD1 protein; VPS4B, AA 99.3 6.8E-12 2.3E-16 135.9 14.8 136 207-370 45-181 (322)
27 3eie_A Vacuolar protein sortin 99.3 5.6E-12 1.9E-16 136.2 14.1 136 207-371 51-187 (322)
28 3vfd_A Spastin; ATPase, microt 99.3 1.1E-11 3.7E-16 137.4 14.6 151 192-371 120-285 (389)
29 2qp9_X Vacuolar protein sortin 99.3 1.2E-11 4.1E-16 135.8 13.7 137 206-371 83-220 (355)
30 3d8b_A Fidgetin-like protein 1 99.3 3.5E-11 1.2E-15 132.0 16.3 137 206-371 116-254 (357)
31 3syl_A Protein CBBX; photosynt 99.3 2.9E-11 1E-15 128.5 14.2 140 206-369 66-205 (309)
32 3h4m_A Proteasome-activating n 99.3 6.3E-11 2.2E-15 124.6 16.0 137 206-371 50-191 (285)
33 3cf0_A Transitional endoplasmi 99.2 1.6E-11 5.6E-16 131.3 11.3 141 206-372 48-190 (301)
34 3hu3_A Transitional endoplasmi 99.2 6.1E-11 2.1E-15 135.7 14.7 138 206-372 237-376 (489)
35 2zan_A Vacuolar protein sortin 99.2 2.9E-11 9.9E-16 136.7 11.6 134 206-370 166-303 (444)
36 1lv7_A FTSH; alpha/beta domain 99.2 1.3E-10 4.6E-15 120.7 14.9 137 207-372 45-186 (257)
37 2ce7_A Cell division protein F 99.2 1.3E-10 4.3E-15 132.5 15.8 136 207-371 49-189 (476)
38 2qz4_A Paraplegin; AAA+, SPG7, 99.2 1.8E-10 6.3E-15 119.1 15.4 138 206-371 38-180 (262)
39 2bjv_A PSP operon transcriptio 99.2 3.2E-11 1.1E-15 125.9 8.5 139 581-732 8-150 (265)
40 3b9p_A CG5977-PA, isoform A; A 99.2 1.8E-10 6.3E-15 121.9 14.1 134 207-369 54-190 (297)
41 3t15_A Ribulose bisphosphate c 99.1 2.5E-11 8.5E-16 129.7 6.5 134 206-366 35-185 (293)
42 3pxi_A Negative regulator of g 99.1 6.2E-09 2.1E-13 125.0 24.3 65 10-79 78-142 (758)
43 3syl_A Protein CBBX; photosynt 99.1 5.4E-10 1.8E-14 118.7 12.5 139 564-731 18-177 (309)
44 3m6a_A ATP-dependent protease 99.1 6.9E-11 2.4E-15 136.9 5.0 145 572-733 76-234 (543)
45 3t15_A Ribulose bisphosphate c 99.0 5.5E-10 1.9E-14 119.3 8.1 127 587-733 15-165 (293)
46 2x8a_A Nuclear valosin-contain 99.0 3.4E-09 1.2E-13 112.2 13.0 136 206-370 43-180 (274)
47 1d2n_A N-ethylmaleimide-sensit 98.9 7E-09 2.4E-13 108.7 14.4 132 206-367 63-197 (272)
48 2r62_A Cell division protease 98.9 9.3E-11 3.2E-15 122.4 -0.0 138 207-372 44-187 (268)
49 3te6_A Regulatory protein SIR3 98.9 1.1E-09 3.9E-14 118.5 7.7 152 192-369 25-199 (318)
50 3nbx_X ATPase RAVA; AAA+ ATPas 98.9 1.6E-09 5.4E-14 124.2 9.2 144 565-732 10-158 (500)
51 1ojl_A Transcriptional regulat 98.9 2.3E-09 7.9E-14 115.2 9.9 139 581-732 4-146 (304)
52 2dhr_A FTSH; AAA+ protein, hex 98.9 4.9E-09 1.7E-13 120.1 12.6 137 207-372 64-205 (499)
53 1ypw_A Transitional endoplasmi 98.9 1.9E-10 6.5E-15 139.1 0.5 137 206-371 510-651 (806)
54 1ofh_A ATP-dependent HSL prote 98.9 8.9E-09 3E-13 108.7 12.5 139 206-369 49-203 (310)
55 3pvs_A Replication-associated 98.8 5.7E-09 2E-13 118.1 10.6 122 197-362 39-161 (447)
56 3pfi_A Holliday junction ATP-d 98.8 1.4E-08 4.6E-13 109.5 13.1 124 581-732 31-163 (338)
57 2v1u_A Cell division control p 98.8 8.8E-09 3E-13 111.8 11.3 154 192-369 24-202 (387)
58 2c9o_A RUVB-like 1; hexameric 98.8 2.6E-09 9E-14 120.9 7.4 79 206-295 62-143 (456)
59 1g41_A Heat shock protein HSLU 98.8 1.4E-08 4.8E-13 114.5 12.4 69 569-645 7-85 (444)
60 3n70_A Transport activator; si 98.8 4.4E-09 1.5E-13 100.3 6.8 133 192-367 6-143 (145)
61 3n70_A Transport activator; si 98.8 9.6E-09 3.3E-13 97.9 9.1 112 581-731 3-114 (145)
62 1ixz_A ATP-dependent metallopr 98.8 3.4E-08 1.2E-12 102.2 13.7 136 207-371 49-189 (254)
63 2r44_A Uncharacterized protein 98.8 8.5E-09 2.9E-13 111.0 8.3 140 566-732 16-159 (331)
64 2qby_A CDC6 homolog 1, cell di 98.8 3.8E-08 1.3E-12 106.5 12.6 151 192-368 25-197 (386)
65 1hqc_A RUVB; extended AAA-ATPa 98.7 7.1E-08 2.4E-12 102.8 13.8 124 581-732 14-147 (324)
66 3pfi_A Holliday junction ATP-d 98.7 5.6E-08 1.9E-12 104.7 12.3 130 192-369 34-185 (338)
67 4akg_A Glutathione S-transfera 98.7 1.3E-06 4.4E-11 116.3 27.3 107 581-713 1588-1698(2695)
68 2chg_A Replication factor C sm 98.7 9.5E-08 3.3E-12 94.5 12.6 138 192-367 22-160 (226)
69 3hws_A ATP-dependent CLP prote 98.7 2.9E-08 9.8E-13 108.7 9.5 77 206-294 50-132 (363)
70 3co5_A Putative two-component 98.7 1.5E-08 5.3E-13 96.4 5.9 109 581-731 6-114 (143)
71 3f9v_A Minichromosome maintena 98.7 7.3E-09 2.5E-13 121.3 3.9 149 566-732 284-443 (595)
72 1iy2_A ATP-dependent metallopr 98.7 1.2E-07 3.9E-12 99.9 12.6 136 207-371 73-213 (278)
73 1a5t_A Delta prime, HOLB; zinc 98.6 1.2E-07 4.1E-12 102.9 12.5 130 581-732 4-147 (334)
74 2bjv_A PSP operon transcriptio 98.6 4.5E-08 1.6E-12 102.0 7.6 145 192-367 11-178 (265)
75 1ny5_A Transcriptional regulat 98.6 8.6E-08 3E-12 106.3 10.3 139 581-732 139-281 (387)
76 1d2n_A N-ethylmaleimide-sensit 98.6 6.6E-08 2.3E-12 101.2 8.8 135 572-732 28-176 (272)
77 3h4m_A Proteasome-activating n 98.6 1.1E-07 3.8E-12 99.7 10.1 127 581-732 19-165 (285)
78 1fnn_A CDC6P, cell division co 98.6 3.6E-07 1.2E-11 99.4 14.5 145 192-367 22-192 (389)
79 2chg_A Replication factor C sm 98.6 2.2E-07 7.4E-12 91.9 11.0 116 581-732 19-141 (226)
80 2qby_B CDC6 homolog 3, cell di 98.6 2.4E-07 8.2E-12 100.9 12.3 148 192-368 25-197 (384)
81 2gno_A DNA polymerase III, gam 98.6 2.7E-07 9.4E-12 99.3 12.1 114 583-732 1-121 (305)
82 3co5_A Putative two-component 98.5 2.2E-08 7.7E-13 95.2 3.0 129 192-367 9-141 (143)
83 1xwi_A SKD1 protein; VPS4B, AA 98.5 3E-07 1E-11 99.4 12.2 127 581-733 14-159 (322)
84 3uk6_A RUVB-like 2; hexameric 98.5 2E-07 7E-12 101.2 10.8 25 208-232 71-95 (368)
85 3u61_B DNA polymerase accessor 98.5 2.4E-07 8.3E-12 99.2 11.0 130 192-369 31-166 (324)
86 1sxj_D Activator 1 41 kDa subu 98.5 1.7E-07 5.9E-12 100.8 9.9 130 581-732 39-172 (353)
87 2zan_A Vacuolar protein sortin 98.5 2.4E-07 8.4E-12 104.5 11.4 128 581-732 136-280 (444)
88 1jr3_A DNA polymerase III subu 98.5 6.9E-07 2.3E-11 96.8 14.0 129 581-731 18-157 (373)
89 3eie_A Vacuolar protein sortin 98.5 2E-07 7E-12 100.4 9.7 125 581-732 20-163 (322)
90 1iqp_A RFCS; clamp loader, ext 98.5 4E-07 1.4E-11 96.6 11.7 117 581-732 27-149 (327)
91 1sxj_B Activator 1 37 kDa subu 98.5 2.9E-07 9.9E-12 97.5 10.4 116 581-732 23-146 (323)
92 1ojl_A Transcriptional regulat 98.5 3.9E-08 1.3E-12 105.6 3.5 140 192-367 7-174 (304)
93 1hqc_A RUVB; extended AAA-ATPa 98.5 2.9E-07 1E-11 98.0 10.3 82 192-293 17-105 (324)
94 1l8q_A Chromosomal replication 98.5 1.4E-07 4.8E-12 101.2 7.8 132 207-372 37-170 (324)
95 3u61_B DNA polymerase accessor 98.5 2.7E-07 9.1E-12 98.9 9.9 113 581-732 28-145 (324)
96 2qz4_A Paraplegin; AAA+, SPG7, 98.5 1.1E-06 3.9E-11 90.4 14.0 125 581-732 8-154 (262)
97 1jbk_A CLPB protein; beta barr 98.5 2.1E-07 7E-12 89.9 7.8 120 577-731 22-159 (195)
98 3cf0_A Transitional endoplasmi 98.5 5E-07 1.7E-11 96.5 11.3 126 581-732 17-163 (301)
99 2qp9_X Vacuolar protein sortin 98.5 3.7E-07 1.3E-11 100.0 10.5 124 581-732 53-196 (355)
100 2chq_A Replication factor C sm 98.5 2.1E-07 7.1E-12 98.4 8.0 116 581-732 19-141 (319)
101 1um8_A ATP-dependent CLP prote 98.5 2.1E-07 7.3E-12 102.1 8.3 76 206-293 71-152 (376)
102 2p65_A Hypothetical protein PF 98.4 2.2E-07 7.4E-12 89.8 6.9 120 577-731 22-160 (187)
103 3d8b_A Fidgetin-like protein 1 98.4 1E-06 3.6E-11 96.4 12.8 128 577-732 84-230 (357)
104 3b9p_A CG5977-PA, isoform A; A 98.4 1.5E-06 5.1E-11 91.7 13.4 127 581-732 23-168 (297)
105 1njg_A DNA polymerase III subu 98.4 1.9E-06 6.5E-11 85.9 13.5 139 192-367 28-184 (250)
106 2r62_A Cell division protease 98.4 1.9E-07 6.3E-12 97.2 6.3 127 581-733 13-161 (268)
107 3vfd_A Spastin; ATPase, microt 98.4 7.2E-07 2.5E-11 98.6 11.4 127 581-732 117-261 (389)
108 1njg_A DNA polymerase III subu 98.4 9.1E-07 3.1E-11 88.2 10.9 131 581-732 25-165 (250)
109 4fcw_A Chaperone protein CLPB; 98.4 1.5E-06 5.3E-11 91.9 12.9 91 192-292 22-133 (311)
110 1g8p_A Magnesium-chelatase 38 98.4 4.6E-07 1.6E-11 97.5 8.5 49 680-732 145-196 (350)
111 3bos_A Putative DNA replicatio 98.4 5.1E-07 1.7E-11 91.1 8.1 81 194-293 38-119 (242)
112 4b4t_J 26S protease regulatory 98.4 1E-06 3.5E-11 98.1 11.1 126 581-733 150-297 (405)
113 3m6a_A ATP-dependent protease 98.4 1.3E-07 4.5E-12 109.4 4.1 126 206-369 107-254 (543)
114 3k1j_A LON protease, ATP-depen 98.4 1.1E-06 3.7E-11 103.0 11.8 54 581-643 43-96 (604)
115 4b4t_L 26S protease subunit RP 98.4 1.5E-06 5.2E-11 97.9 12.5 126 581-733 183-330 (437)
116 2qby_B CDC6 homolog 3, cell di 98.4 2.8E-07 9.7E-12 100.3 6.2 135 577-732 20-173 (384)
117 3uk6_A RUVB-like 2; hexameric 98.3 1.4E-06 4.9E-11 94.5 11.1 60 581-644 46-106 (368)
118 1fnn_A CDC6P, cell division co 98.3 1.6E-06 5.4E-11 94.2 11.4 141 577-732 17-168 (389)
119 1r6b_X CLPA protein; AAA+, N-t 98.3 2.3E-06 7.8E-11 102.6 13.4 61 11-76 79-139 (758)
120 4b4t_K 26S protease regulatory 98.3 2.4E-06 8.3E-11 96.0 12.4 126 581-733 174-321 (428)
121 1sxj_B Activator 1 37 kDa subu 98.3 2.1E-06 7.3E-11 90.8 11.2 134 192-367 26-165 (323)
122 3pvs_A Replication-associated 98.3 5.9E-07 2E-11 101.6 7.1 100 581-710 28-134 (447)
123 1sxj_C Activator 1 40 kDa subu 98.3 1.5E-06 5E-11 94.1 10.0 116 581-732 27-149 (340)
124 4b4t_I 26S protease regulatory 98.3 2.4E-06 8.1E-11 95.7 11.8 126 581-733 184-331 (437)
125 3fh2_A Probable ATP-dependent 98.3 1.3E-06 4.4E-11 83.7 8.2 65 10-79 80-144 (146)
126 4b4t_H 26S protease regulatory 98.3 2.9E-06 9.8E-11 95.8 11.9 126 581-733 211-358 (467)
127 2r44_A Uncharacterized protein 98.3 6.6E-07 2.2E-11 96.2 6.4 132 192-369 32-186 (331)
128 1w5s_A Origin recognition comp 98.3 4.6E-06 1.6E-10 91.4 13.2 100 192-293 27-153 (412)
129 3fes_A ATP-dependent CLP endop 98.3 1E-06 3.5E-11 84.3 6.5 64 10-78 80-143 (145)
130 3dzd_A Transcriptional regulat 98.2 2.7E-06 9.2E-11 93.8 10.7 138 581-732 131-272 (368)
131 3hu3_A Transitional endoplasmi 98.2 1.2E-06 4.2E-11 100.1 8.2 124 581-732 206-349 (489)
132 1sxj_A Activator 1 95 kDa subu 98.2 1.4E-06 4.9E-11 100.0 8.7 89 192-293 44-163 (516)
133 1lv7_A FTSH; alpha/beta domain 98.2 6.9E-06 2.3E-10 85.0 13.1 126 581-733 14-160 (257)
134 2z4s_A Chromosomal replication 98.2 1.8E-06 6.1E-11 97.4 8.7 143 196-370 116-265 (440)
135 2ce7_A Cell division protein F 98.2 4.8E-06 1.6E-10 94.9 12.2 124 581-732 18-163 (476)
136 1sxj_D Activator 1 41 kDa subu 98.2 4.9E-06 1.7E-10 89.4 11.0 138 192-367 42-191 (353)
137 1iqp_A RFCS; clamp loader, ext 98.2 4.1E-06 1.4E-10 88.7 10.2 137 192-367 30-168 (327)
138 1sxj_E Activator 1 40 kDa subu 98.2 6.7E-06 2.3E-10 88.7 11.5 128 581-732 16-173 (354)
139 2chq_A Replication factor C sm 98.1 1.6E-06 5.6E-11 91.5 6.1 139 192-368 22-161 (319)
140 4b4t_M 26S protease regulatory 98.1 5E-06 1.7E-10 93.6 10.3 125 581-733 183-330 (434)
141 1g8p_A Magnesium-chelatase 38 98.1 1.1E-06 3.8E-11 94.4 4.6 27 206-232 44-70 (350)
142 2y1q_A CLPC N-domain, negative 98.1 4.6E-06 1.6E-10 79.7 8.3 66 10-80 78-143 (150)
143 3pxg_A Negative regulator of g 98.1 3.3E-06 1.1E-10 95.9 8.5 109 581-731 182-299 (468)
144 1jr3_A DNA polymerase III subu 98.1 1.9E-05 6.6E-10 85.4 13.7 140 192-368 21-178 (373)
145 4akg_A Glutathione S-transfera 98.1 0.00013 4.6E-09 97.4 23.5 110 606-728 925-1049(2695)
146 1sxj_A Activator 1 95 kDa subu 98.1 3.1E-06 1.1E-10 97.2 6.5 120 581-709 41-178 (516)
147 2v1u_A Cell division control p 98.1 2.7E-06 9.3E-11 92.0 5.6 142 577-732 19-176 (387)
148 2fna_A Conserved hypothetical 98.1 9.1E-05 3.1E-09 78.9 17.4 37 192-231 18-54 (357)
149 2c9o_A RUVB-like 1; hexameric 98.0 7E-06 2.4E-10 92.8 8.9 95 577-691 37-138 (456)
150 2qen_A Walker-type ATPase; unk 98.0 0.0001 3.4E-09 78.5 15.5 39 192-231 17-55 (350)
151 1k6k_A ATP-dependent CLP prote 97.9 1.8E-05 6.1E-10 74.9 7.7 60 11-75 79-138 (143)
152 2qby_A CDC6 homolog 1, cell di 97.9 4.7E-06 1.6E-10 90.0 4.0 138 577-732 20-172 (386)
153 1qvr_A CLPB protein; coiled co 97.9 1.7E-05 5.7E-10 96.6 8.9 60 102-174 5-66 (854)
154 3nbx_X ATPase RAVA; AAA+ ATPas 97.9 8.3E-06 2.8E-10 93.5 5.6 39 192-231 27-65 (500)
155 1khy_A CLPB protein; alpha hel 97.9 2.1E-05 7.2E-10 74.8 7.5 63 102-177 5-69 (148)
156 2dhr_A FTSH; AAA+ protein, hex 97.8 2.2E-05 7.6E-10 89.9 8.3 124 581-732 33-178 (499)
157 2w58_A DNAI, primosome compone 97.8 1.4E-05 4.6E-10 79.5 5.0 102 605-731 55-157 (202)
158 3ec2_A DNA replication protein 97.8 5E-06 1.7E-10 81.3 1.8 74 206-289 37-111 (180)
159 1sxj_C Activator 1 40 kDa subu 97.8 9E-05 3.1E-09 80.0 11.7 130 195-366 33-167 (340)
160 1g41_A Heat shock protein HSLU 97.8 1.6E-05 5.5E-10 89.7 5.9 70 207-292 50-121 (444)
161 2w58_A DNAI, primosome compone 97.7 2E-05 6.7E-10 78.3 5.2 72 208-290 55-127 (202)
162 1a5t_A Delta prime, HOLB; zinc 97.7 0.00024 8.1E-09 76.8 13.7 143 192-368 7-167 (334)
163 3zri_A CLPB protein, CLPV; cha 97.7 4.6E-05 1.6E-09 75.2 7.2 61 102-176 24-86 (171)
164 3f9v_A Minichromosome maintena 97.7 1.8E-06 6.2E-11 101.0 -4.0 23 209-231 329-351 (595)
165 2x8a_A Nuclear valosin-contain 97.7 0.00016 5.6E-09 76.2 10.8 103 601-732 42-155 (274)
166 3ec2_A DNA replication protein 97.6 5.6E-05 1.9E-09 73.8 6.3 103 604-731 38-141 (180)
167 1sxj_E Activator 1 40 kDa subu 97.6 0.00013 4.5E-09 78.5 9.7 41 192-232 19-61 (354)
168 1l8q_A Chromosomal replication 97.6 5.2E-05 1.8E-09 81.1 6.4 90 603-707 36-125 (324)
169 3te6_A Regulatory protein SIR3 97.6 0.00023 7.9E-09 76.9 10.9 140 581-735 22-175 (318)
170 2vhj_A Ntpase P4, P4; non- hyd 97.6 0.00012 4.2E-09 79.1 8.5 76 206-293 122-197 (331)
171 1in4_A RUVB, holliday junction 97.6 0.00041 1.4E-08 74.9 12.5 103 581-711 27-131 (334)
172 1ixz_A ATP-dependent metallopr 97.6 0.0001 3.6E-09 75.9 7.4 105 602-732 48-163 (254)
173 3k1j_A LON protease, ATP-depen 97.5 0.00021 7.1E-09 83.6 10.5 39 194-232 47-85 (604)
174 2qgz_A Helicase loader, putati 97.5 2.9E-05 9.8E-10 83.4 2.2 73 207-290 152-226 (308)
175 1iy2_A ATP-dependent metallopr 97.5 0.00012 4.2E-09 76.7 7.0 71 603-690 73-143 (278)
176 2z4s_A Chromosomal replication 97.5 0.00021 7.1E-09 80.5 9.2 113 581-708 108-222 (440)
177 2kjq_A DNAA-related protein; s 97.5 9.5E-05 3.3E-09 70.9 5.5 68 200-291 28-96 (149)
178 3bos_A Putative DNA replicatio 97.5 0.00023 8E-09 71.4 8.3 82 603-708 51-132 (242)
179 2kjq_A DNAA-related protein; s 97.4 0.00019 6.5E-09 68.8 6.9 75 603-708 35-109 (149)
180 2gno_A DNA polymerase III, gam 97.3 0.0015 5.1E-08 70.0 12.9 79 206-293 17-97 (305)
181 2qgz_A Helicase loader, putati 97.3 8.7E-05 3E-09 79.7 3.1 104 604-732 152-257 (308)
182 1in4_A RUVB, holliday junction 97.3 0.00039 1.3E-08 75.1 8.0 65 208-292 52-116 (334)
183 1w5s_A Origin recognition comp 97.2 0.00059 2E-08 74.6 8.6 143 577-731 22-187 (412)
184 3dzd_A Transcriptional regulat 97.0 0.0013 4.4E-08 72.3 9.2 52 195-254 140-191 (368)
185 3cmw_A Protein RECA, recombina 96.9 0.0011 3.9E-08 85.1 8.4 79 207-294 1082-1176(1706)
186 3f8t_A Predicted ATPase involv 96.9 0.00076 2.6E-08 76.4 5.7 140 567-732 204-348 (506)
187 1ny5_A Transcriptional regulat 96.8 0.00062 2.1E-08 75.3 4.3 56 192-254 142-200 (387)
188 1sky_E F1-ATPase, F1-ATP synth 96.8 0.0022 7.4E-08 72.7 8.5 35 199-233 141-177 (473)
189 1qhx_A CPT, protein (chloramph 96.6 0.0022 7.6E-08 61.8 6.2 25 207-231 3-27 (178)
190 3ice_A Transcription terminati 96.6 0.016 5.3E-07 64.3 13.3 135 197-341 162-324 (422)
191 1tue_A Replication protein E1; 96.5 0.0013 4.3E-08 66.9 3.4 96 605-732 59-156 (212)
192 3cmu_A Protein RECA, recombina 96.4 0.0039 1.3E-07 81.2 7.8 79 206-293 1426-1520(2050)
193 3a8t_A Adenylate isopentenyltr 96.3 0.0033 1.1E-07 68.4 5.6 76 206-284 39-136 (339)
194 3vkg_A Dynein heavy chain, cyt 96.3 0.00076 2.6E-08 91.0 0.6 113 607-732 1307-1431(3245)
195 3jvv_A Twitching mobility prot 96.2 0.0081 2.8E-07 65.8 8.3 99 601-710 120-222 (356)
196 2w0m_A SSO2452; RECA, SSPF, un 96.2 0.015 5.3E-07 57.7 9.5 27 206-232 22-48 (235)
197 1z6t_A APAF-1, apoptotic prote 96.1 0.0024 8.1E-08 73.7 3.7 39 192-230 129-170 (591)
198 3trf_A Shikimate kinase, SK; a 96.1 0.0033 1.1E-07 61.1 3.8 33 207-249 5-37 (185)
199 2orw_A Thymidine kinase; TMTK, 96.1 0.0043 1.5E-07 61.4 4.7 96 606-709 5-103 (184)
200 2b8t_A Thymidine kinase; deoxy 96.1 0.023 8E-07 58.1 10.3 102 603-710 11-117 (223)
201 2r2a_A Uncharacterized protein 96.0 0.0019 6.5E-08 65.0 1.8 21 210-230 8-28 (199)
202 3crm_A TRNA delta(2)-isopenten 96.0 0.015 5E-07 63.0 8.6 65 207-283 5-99 (323)
203 1n0w_A DNA repair protein RAD5 95.8 0.03 1E-06 56.3 9.5 85 206-293 23-134 (243)
204 2fna_A Conserved hypothetical 95.7 0.028 9.5E-07 59.5 9.2 124 581-731 15-178 (357)
205 3vaa_A Shikimate kinase, SK; s 95.6 0.0067 2.3E-07 60.1 3.9 34 206-249 24-57 (199)
206 3ney_A 55 kDa erythrocyte memb 95.6 0.024 8.3E-07 57.0 7.9 26 206-231 18-43 (197)
207 2yvu_A Probable adenylyl-sulfa 95.5 0.023 7.9E-07 55.2 7.4 28 206-233 12-39 (186)
208 3e1s_A Exodeoxyribonuclease V, 95.5 0.053 1.8E-06 63.0 11.6 28 206-233 203-230 (574)
209 2orw_A Thymidine kinase; TMTK, 95.5 0.0083 2.8E-07 59.3 4.0 23 210-232 6-28 (184)
210 2fz4_A DNA repair protein RAD2 95.5 0.051 1.7E-06 55.6 10.0 41 189-231 92-132 (237)
211 1jr3_D DNA polymerase III, del 95.5 0.022 7.6E-07 61.1 7.6 93 603-732 17-116 (343)
212 1u0j_A DNA replication protein 95.5 0.018 6.3E-07 60.6 6.7 53 152-231 73-128 (267)
213 2eyu_A Twitching motility prot 95.5 0.042 1.5E-06 57.3 9.5 83 601-689 22-108 (261)
214 1tue_A Replication protein E1; 95.4 0.011 3.8E-07 60.0 4.7 51 154-231 30-82 (212)
215 1via_A Shikimate kinase; struc 95.4 0.01 3.5E-07 57.2 4.2 24 208-231 5-28 (175)
216 3iij_A Coilin-interacting nucl 95.4 0.011 3.7E-07 57.3 4.3 26 206-231 10-35 (180)
217 3eph_A TRNA isopentenyltransfe 95.4 0.03 1E-06 62.3 8.3 75 208-284 3-97 (409)
218 1ex7_A Guanylate kinase; subst 95.3 0.026 9E-07 56.1 7.1 23 209-231 3-25 (186)
219 2a5y_B CED-4; apoptosis; HET: 95.3 0.032 1.1E-06 64.2 8.8 38 192-229 133-174 (549)
220 3kb2_A SPBC2 prophage-derived 95.3 0.011 3.9E-07 56.0 4.2 23 209-231 3-25 (173)
221 1zuh_A Shikimate kinase; alpha 95.3 0.01 3.5E-07 56.7 3.7 33 207-249 7-39 (168)
222 2zr9_A Protein RECA, recombina 95.2 0.033 1.1E-06 60.7 8.0 78 206-292 60-153 (349)
223 3exa_A TRNA delta(2)-isopenten 95.2 0.018 6E-07 62.1 5.7 74 208-283 4-97 (322)
224 1y63_A LMAJ004144AAA protein; 95.2 0.011 3.6E-07 57.9 3.6 25 206-230 9-33 (184)
225 3vkg_A Dynein heavy chain, cyt 95.2 0.045 1.5E-06 74.3 10.6 98 609-732 609-716 (3245)
226 3upu_A ATP-dependent DNA helic 95.2 0.06 2.1E-06 60.5 10.2 36 199-234 37-72 (459)
227 2iyv_A Shikimate kinase, SK; t 95.2 0.013 4.3E-07 56.9 4.0 24 208-231 3-26 (184)
228 2qen_A Walker-type ATPase; unk 95.1 0.048 1.6E-06 57.6 8.7 50 581-644 14-63 (350)
229 2cvh_A DNA repair and recombin 95.0 0.031 1.1E-06 55.3 6.5 24 206-229 19-42 (220)
230 1g5t_A COB(I)alamin adenosyltr 95.0 0.064 2.2E-06 53.9 8.5 81 206-293 27-135 (196)
231 2ze6_A Isopentenyl transferase 94.9 0.059 2E-06 55.7 8.6 23 209-231 3-25 (253)
232 2gxq_A Heat resistant RNA depe 94.9 0.53 1.8E-05 45.8 15.0 27 206-232 37-64 (207)
233 2c95_A Adenylate kinase 1; tra 94.9 0.022 7.6E-07 55.4 4.9 26 206-231 8-33 (196)
234 2rhm_A Putative kinase; P-loop 94.8 0.015 5.1E-07 56.4 3.5 25 207-231 5-29 (193)
235 3lw7_A Adenylate kinase relate 94.8 0.016 5.6E-07 54.6 3.6 22 208-230 2-23 (179)
236 1gvn_B Zeta; postsegregational 94.8 0.03 1E-06 59.2 6.0 26 206-231 32-57 (287)
237 3a4m_A L-seryl-tRNA(SEC) kinas 94.8 0.039 1.3E-06 57.1 6.7 40 207-253 4-43 (260)
238 2ewv_A Twitching motility prot 94.7 0.061 2.1E-06 59.1 8.5 82 601-689 133-219 (372)
239 3f8t_A Predicted ATPase involv 94.7 0.026 8.8E-07 64.0 5.5 37 192-229 217-261 (506)
240 1xx6_A Thymidine kinase; NESG, 94.7 0.042 1.4E-06 54.9 6.4 107 606-722 10-121 (191)
241 1e6c_A Shikimate kinase; phosp 94.7 0.021 7.3E-07 54.4 4.2 24 208-231 3-26 (173)
242 3uie_A Adenylyl-sulfate kinase 94.7 0.052 1.8E-06 53.6 7.1 27 206-232 24-50 (200)
243 3foz_A TRNA delta(2)-isopenten 94.7 0.071 2.4E-06 57.3 8.5 64 209-284 12-105 (316)
244 3l0o_A Transcription terminati 94.7 0.1 3.5E-06 57.8 10.0 37 197-233 163-201 (427)
245 1kgd_A CASK, peripheral plasma 94.7 0.052 1.8E-06 52.8 7.0 25 207-231 5-29 (180)
246 3upu_A ATP-dependent DNA helic 94.6 0.044 1.5E-06 61.6 7.3 113 582-707 28-153 (459)
247 2p5t_B PEZT; postsegregational 94.6 0.049 1.7E-06 56.1 7.0 26 206-231 31-56 (253)
248 1m7g_A Adenylylsulfate kinase; 94.6 0.045 1.6E-06 54.5 6.6 27 206-232 24-50 (211)
249 1nks_A Adenylate kinase; therm 94.6 0.022 7.4E-07 55.0 4.0 24 209-232 3-26 (194)
250 2z43_A DNA repair and recombin 94.6 0.11 3.9E-06 55.5 10.0 86 206-293 106-218 (324)
251 1xp8_A RECA protein, recombina 94.6 0.045 1.5E-06 60.1 6.9 78 206-292 73-166 (366)
252 3dm5_A SRP54, signal recogniti 94.5 0.11 3.7E-06 58.5 9.9 36 207-249 100-135 (443)
253 1vt4_I APAF-1 related killer D 94.5 0.069 2.4E-06 65.9 8.7 38 192-229 133-172 (1221)
254 1u94_A RECA protein, recombina 94.4 0.076 2.6E-06 58.1 8.3 78 206-292 62-155 (356)
255 2cdn_A Adenylate kinase; phosp 94.4 0.023 7.9E-07 56.0 3.9 26 206-231 19-44 (201)
256 2xxa_A Signal recognition part 94.4 0.22 7.7E-06 55.8 12.3 39 208-252 101-139 (433)
257 1tev_A UMP-CMP kinase; ploop, 94.4 0.024 8.1E-07 54.8 3.8 25 207-231 3-27 (196)
258 3hr8_A Protein RECA; alpha and 94.4 0.065 2.2E-06 58.6 7.6 91 192-292 45-153 (356)
259 2bwj_A Adenylate kinase 5; pho 94.4 0.025 8.6E-07 55.1 3.9 26 206-231 11-36 (199)
260 1aky_A Adenylate kinase; ATP:A 94.3 0.027 9.2E-07 56.4 4.1 26 206-231 3-28 (220)
261 3sfz_A APAF-1, apoptotic pepti 94.3 0.046 1.6E-06 67.9 7.1 40 192-231 129-171 (1249)
262 2b8t_A Thymidine kinase; deoxy 94.3 0.029 9.9E-07 57.5 4.3 27 208-234 13-39 (223)
263 3sr0_A Adenylate kinase; phosp 94.3 0.025 8.5E-07 57.1 3.7 23 209-231 2-24 (206)
264 2ck3_D ATP synthase subunit be 94.3 0.2 6.8E-06 56.8 11.4 37 198-234 142-180 (482)
265 3t61_A Gluconokinase; PSI-biol 94.3 0.031 1.1E-06 55.0 4.4 26 206-231 17-42 (202)
266 1kag_A SKI, shikimate kinase I 94.3 0.024 8.2E-07 54.1 3.4 25 207-231 4-28 (173)
267 3cm0_A Adenylate kinase; ATP-b 94.2 0.021 7.4E-07 55.1 3.1 25 207-231 4-28 (186)
268 3cmu_A Protein RECA, recombina 94.2 0.074 2.5E-06 69.6 8.8 80 206-293 1080-1174(2050)
269 3umf_A Adenylate kinase; rossm 94.2 0.031 1.1E-06 56.9 4.2 26 206-231 28-53 (217)
270 1qf9_A UMP/CMP kinase, protein 94.2 0.028 9.6E-07 54.2 3.7 25 207-231 6-30 (194)
271 1u0j_A DNA replication protein 94.2 0.059 2E-06 56.7 6.4 91 604-732 104-199 (267)
272 3dl0_A Adenylate kinase; phosp 94.1 0.024 8.1E-07 56.5 3.2 23 209-231 2-24 (216)
273 2ehv_A Hypothetical protein PH 94.1 0.11 3.8E-06 52.2 8.2 24 206-229 29-52 (251)
274 2pt5_A Shikimate kinase, SK; a 94.1 0.029 1E-06 53.2 3.6 23 209-231 2-24 (168)
275 1ak2_A Adenylate kinase isoenz 94.1 0.032 1.1E-06 56.5 4.1 26 206-231 15-40 (233)
276 1zd8_A GTP:AMP phosphotransfer 94.0 0.029 1E-06 56.5 3.7 26 206-231 6-31 (227)
277 1kht_A Adenylate kinase; phosp 94.0 0.028 9.6E-07 54.2 3.4 26 208-233 4-29 (192)
278 3d3q_A TRNA delta(2)-isopenten 94.0 0.12 4.1E-06 56.2 8.7 79 208-288 8-106 (340)
279 3fb4_A Adenylate kinase; psych 94.0 0.029 1E-06 55.7 3.6 23 209-231 2-24 (216)
280 3be4_A Adenylate kinase; malar 94.0 0.035 1.2E-06 55.6 4.1 25 207-231 5-29 (217)
281 3tau_A Guanylate kinase, GMP k 93.9 0.044 1.5E-06 54.7 4.8 26 206-231 7-32 (208)
282 3cmw_A Protein RECA, recombina 93.9 0.078 2.7E-06 68.5 8.0 80 206-293 33-127 (1706)
283 3p32_A Probable GTPase RV1496/ 93.8 0.24 8.3E-06 53.7 10.8 38 196-233 65-105 (355)
284 3tlx_A Adenylate kinase 2; str 93.8 0.06 2E-06 55.2 5.5 26 206-231 28-53 (243)
285 3dm5_A SRP54, signal recogniti 93.7 0.51 1.7E-05 53.0 13.3 97 603-703 99-205 (443)
286 2pbr_A DTMP kinase, thymidylat 93.6 0.053 1.8E-06 52.4 4.6 34 209-249 2-35 (195)
287 4eun_A Thermoresistant glucoki 93.6 0.037 1.3E-06 54.7 3.5 26 206-231 28-53 (200)
288 2dr3_A UPF0273 protein PH0284; 93.6 0.13 4.3E-06 51.7 7.6 28 206-233 22-49 (247)
289 1ly1_A Polynucleotide kinase; 93.6 0.031 1E-06 53.4 2.8 23 208-230 3-25 (181)
290 1e4v_A Adenylate kinase; trans 93.6 0.038 1.3E-06 55.1 3.5 23 209-231 2-24 (214)
291 4a74_A DNA repair and recombin 93.6 0.2 7E-06 49.6 8.9 26 206-231 24-49 (231)
292 3kl4_A SRP54, signal recogniti 93.5 0.14 4.9E-06 57.4 8.5 27 207-233 97-123 (433)
293 1zak_A Adenylate kinase; ATP:A 93.5 0.04 1.4E-06 55.2 3.6 26 206-231 4-29 (222)
294 1qde_A EIF4A, translation init 93.5 0.54 1.9E-05 46.5 11.9 26 206-231 50-76 (224)
295 1knq_A Gluconate kinase; ALFA/ 93.5 0.051 1.8E-06 52.0 4.2 25 207-231 8-32 (175)
296 1g8f_A Sulfate adenylyltransfe 93.4 0.16 5.5E-06 58.2 8.8 40 193-232 377-420 (511)
297 1ukz_A Uridylate kinase; trans 93.4 0.041 1.4E-06 54.1 3.4 26 206-231 14-39 (203)
298 2v54_A DTMP kinase, thymidylat 93.4 0.055 1.9E-06 53.0 4.3 25 207-231 4-28 (204)
299 1p9r_A General secretion pathw 93.3 0.25 8.5E-06 55.2 9.9 97 602-710 165-262 (418)
300 2qor_A Guanylate kinase; phosp 93.2 0.044 1.5E-06 54.3 3.3 26 206-231 11-36 (204)
301 3cr8_A Sulfate adenylyltranfer 93.2 0.32 1.1E-05 56.2 10.9 39 194-232 352-394 (552)
302 3kl4_A SRP54, signal recogniti 93.2 0.31 1.1E-05 54.7 10.4 99 603-705 96-206 (433)
303 3llm_A ATP-dependent RNA helic 93.2 0.98 3.4E-05 45.5 13.4 23 206-228 75-97 (235)
304 3nwj_A ATSK2; P loop, shikimat 93.1 0.061 2.1E-06 55.9 4.3 25 207-231 48-72 (250)
305 2r6a_A DNAB helicase, replicat 93.1 0.43 1.5E-05 53.5 11.6 38 193-233 190-229 (454)
306 2pl3_A Probable ATP-dependent 93.1 0.58 2E-05 46.9 11.5 21 206-226 61-81 (236)
307 2pez_A Bifunctional 3'-phospho 93.0 0.073 2.5E-06 51.3 4.5 36 207-249 5-40 (179)
308 1zp6_A Hypothetical protein AT 93.0 0.041 1.4E-06 53.4 2.7 25 206-230 8-32 (191)
309 2jaq_A Deoxyguanosine kinase; 93.0 0.049 1.7E-06 53.1 3.2 23 209-231 2-24 (205)
310 2z0h_A DTMP kinase, thymidylat 93.0 0.078 2.7E-06 51.4 4.7 33 210-249 3-35 (197)
311 2plr_A DTMP kinase, probable t 93.0 0.049 1.7E-06 53.4 3.2 25 208-232 5-29 (213)
312 1vma_A Cell division protein F 92.9 0.17 5.8E-06 54.1 7.5 26 208-233 105-130 (306)
313 2px0_A Flagellar biosynthesis 92.9 0.19 6.6E-06 53.3 7.9 27 206-232 104-130 (296)
314 3fe2_A Probable ATP-dependent 92.9 1.1 3.8E-05 45.1 13.3 28 206-233 65-93 (242)
315 2j9r_A Thymidine kinase; TK1, 92.8 0.12 4.1E-06 52.6 5.9 111 603-722 26-141 (214)
316 2vli_A Antibiotic resistance p 92.8 0.039 1.3E-06 53.0 2.2 25 207-231 5-29 (183)
317 2pt7_A CAG-ALFA; ATPase, prote 92.8 0.12 4E-06 55.9 6.0 92 604-709 171-264 (330)
318 2a5y_B CED-4; apoptosis; HET: 92.7 0.55 1.9E-05 53.9 11.9 106 582-691 131-255 (549)
319 2xb4_A Adenylate kinase; ATP-b 92.7 0.069 2.4E-06 53.8 3.9 23 209-231 2-24 (223)
320 3lxx_A GTPase IMAP family memb 92.7 0.096 3.3E-06 53.0 5.0 24 206-229 28-51 (239)
321 3b6e_A Interferon-induced heli 92.7 0.17 5.8E-06 49.5 6.6 41 189-231 32-72 (216)
322 1nn5_A Similar to deoxythymidy 92.7 0.061 2.1E-06 53.0 3.4 28 206-233 8-35 (215)
323 1zu4_A FTSY; GTPase, signal re 92.6 0.32 1.1E-05 52.2 9.2 74 566-644 52-142 (320)
324 2iut_A DNA translocase FTSK; n 92.6 1 3.5E-05 52.2 13.8 42 207-251 214-255 (574)
325 1fx0_B ATP synthase beta chain 92.6 0.19 6.5E-06 57.1 7.7 37 198-234 154-192 (498)
326 2i3b_A HCR-ntpase, human cance 92.6 0.071 2.4E-06 52.9 3.8 24 606-631 3-26 (189)
327 2wwf_A Thymidilate kinase, put 92.6 0.064 2.2E-06 52.8 3.4 26 207-232 10-35 (212)
328 1v5w_A DMC1, meiotic recombina 92.6 0.32 1.1E-05 52.5 9.2 85 206-293 121-234 (343)
329 1vec_A ATP-dependent RNA helic 92.5 1.9 6.5E-05 41.8 14.0 20 206-225 39-58 (206)
330 2bbw_A Adenylate kinase 4, AK4 92.3 0.073 2.5E-06 54.3 3.5 26 206-231 26-51 (246)
331 1r8s_A ADP-ribosylation factor 92.2 0.22 7.7E-06 46.1 6.5 23 209-231 2-24 (164)
332 1x6v_B Bifunctional 3'-phospho 92.1 0.17 5.6E-06 59.5 6.6 37 207-250 52-88 (630)
333 1svi_A GTP-binding protein YSX 92.0 0.22 7.5E-06 47.8 6.4 25 206-230 22-46 (195)
334 2zts_A Putative uncharacterize 92.0 0.59 2E-05 46.7 9.8 25 206-230 29-53 (251)
335 2if2_A Dephospho-COA kinase; a 91.9 0.09 3.1E-06 51.6 3.6 30 209-249 3-32 (204)
336 3ly5_A ATP-dependent RNA helic 91.9 0.68 2.3E-05 47.6 10.4 26 207-232 91-117 (262)
337 2vhj_A Ntpase P4, P4; non- hyd 91.7 0.22 7.7E-06 53.8 6.6 71 605-691 124-194 (331)
338 1rz3_A Hypothetical protein rb 91.7 0.22 7.6E-06 49.1 6.1 41 192-232 3-47 (201)
339 2r8r_A Sensor protein; KDPD, P 91.7 0.13 4.4E-06 52.8 4.5 38 206-250 5-42 (228)
340 2q6t_A DNAB replication FORK h 91.6 0.4 1.4E-05 53.6 8.9 28 206-233 199-226 (444)
341 3zvl_A Bifunctional polynucleo 91.6 0.13 4.3E-06 57.3 4.7 26 206-231 257-282 (416)
342 2gza_A Type IV secretion syste 91.6 0.43 1.5E-05 52.0 8.9 94 603-709 174-276 (361)
343 1j8m_F SRP54, signal recogniti 91.6 0.68 2.3E-05 49.1 10.1 25 209-233 100-124 (297)
344 3iuy_A Probable ATP-dependent 91.5 1.6 5.4E-05 43.3 12.4 20 206-225 56-75 (228)
345 2gj8_A MNME, tRNA modification 91.5 0.34 1.2E-05 46.2 7.1 24 207-230 4-27 (172)
346 1w4r_A Thymidine kinase; type 91.5 0.33 1.1E-05 48.6 7.1 25 210-234 23-48 (195)
347 1cke_A CK, MSSA, protein (cyti 91.5 0.1 3.4E-06 52.0 3.4 24 208-231 6-29 (227)
348 3pey_A ATP-dependent RNA helic 91.5 2.3 7.9E-05 45.1 14.4 38 191-229 28-66 (395)
349 2ga8_A Hypothetical 39.9 kDa p 91.5 0.14 4.6E-06 56.1 4.6 27 206-232 23-49 (359)
350 1ye8_A Protein THEP1, hypothet 91.4 0.1 3.4E-06 51.2 3.2 23 209-231 2-24 (178)
351 3ake_A Cytidylate kinase; CMP 91.4 0.12 4.1E-06 50.6 3.8 23 209-231 4-26 (208)
352 2xxa_A Signal recognition part 91.3 0.78 2.7E-05 51.4 10.8 42 602-646 98-140 (433)
353 2xtp_A GTPase IMAP family memb 91.3 0.27 9.3E-06 50.2 6.6 24 206-229 21-44 (260)
354 2ged_A SR-beta, signal recogni 91.3 0.12 4E-06 49.8 3.6 24 206-229 47-70 (193)
355 3lda_A DNA repair protein RAD5 91.3 0.56 1.9E-05 52.0 9.4 83 206-293 177-288 (400)
356 1uf9_A TT1252 protein; P-loop, 91.3 0.096 3.3E-06 51.1 2.9 25 206-230 7-31 (203)
357 2bdt_A BH3686; alpha-beta prot 91.2 0.1 3.4E-06 50.7 3.0 21 209-229 4-24 (189)
358 2w0m_A SSO2452; RECA, SSPF, un 91.2 0.25 8.7E-06 48.7 6.0 26 604-631 23-48 (235)
359 2wsm_A Hydrogenase expression/ 91.1 0.19 6.6E-06 49.6 5.1 26 206-231 29-54 (221)
360 1lvg_A Guanylate kinase, GMP k 91.1 0.12 4.2E-06 51.1 3.6 25 207-231 4-28 (198)
361 1hv8_A Putative ATP-dependent 91.1 0.96 3.3E-05 47.6 10.8 26 206-231 43-68 (367)
362 1zj6_A ADP-ribosylation factor 91.0 0.15 5.1E-06 49.0 3.9 33 196-229 5-38 (187)
363 4dhe_A Probable GTP-binding pr 90.9 0.28 9.7E-06 48.3 6.0 25 206-230 28-52 (223)
364 2p6r_A Afuhel308 helicase; pro 90.8 0.89 3E-05 53.6 11.2 23 206-228 39-61 (702)
365 3tr0_A Guanylate kinase, GMP k 90.8 0.11 3.9E-06 50.7 3.0 20 210-229 10-29 (205)
366 2i1q_A DNA repair and recombin 90.8 0.49 1.7E-05 50.2 8.1 26 206-231 97-122 (322)
367 1q0u_A Bstdead; DEAD protein, 90.8 3.1 0.00011 41.0 13.6 21 206-226 40-60 (219)
368 2j41_A Guanylate kinase; GMP, 90.8 0.12 4.1E-06 50.5 3.1 25 207-231 6-30 (207)
369 2qe7_A ATP synthase subunit al 90.8 1.3 4.4E-05 50.5 11.9 33 198-230 151-186 (502)
370 2gks_A Bifunctional SAT/APS ki 90.8 0.44 1.5E-05 54.9 8.3 52 194-252 355-410 (546)
371 2ius_A DNA translocase FTSK; n 90.8 1.8 6.1E-05 49.5 13.2 42 206-250 166-207 (512)
372 3iby_A Ferrous iron transport 90.8 0.25 8.5E-06 51.1 5.6 23 208-230 2-24 (256)
373 1pzn_A RAD51, DNA repair and r 90.8 0.55 1.9E-05 50.9 8.6 85 206-293 130-246 (349)
374 2grj_A Dephospho-COA kinase; T 90.8 0.15 5.2E-06 50.7 3.8 32 208-249 13-44 (192)
375 3a00_A Guanylate kinase, GMP k 90.7 0.12 4E-06 50.4 2.9 24 209-232 3-26 (186)
376 3trf_A Shikimate kinase, SK; a 90.6 0.17 5.9E-06 48.7 4.0 24 605-630 6-29 (185)
377 2h92_A Cytidylate kinase; ross 90.6 0.17 5.8E-06 50.2 4.1 25 207-231 3-27 (219)
378 2j37_W Signal recognition part 90.6 0.34 1.2E-05 55.4 7.0 27 207-233 101-127 (504)
379 3bor_A Human initiation factor 90.6 1.2 4.1E-05 44.8 10.5 20 206-225 66-85 (237)
380 3c8u_A Fructokinase; YP_612366 90.6 0.19 6.5E-06 49.8 4.4 42 586-631 6-47 (208)
381 3vaa_A Shikimate kinase, SK; s 90.5 0.18 6.2E-06 49.6 4.1 26 603-630 24-49 (199)
382 3e1s_A Exodeoxyribonuclease V, 90.5 0.23 7.9E-06 57.7 5.6 106 582-709 192-306 (574)
383 1j8m_F SRP54, signal recogniti 90.5 0.65 2.2E-05 49.3 8.7 85 604-691 98-192 (297)
384 3ber_A Probable ATP-dependent 90.4 4.2 0.00014 41.3 14.5 28 206-233 79-107 (249)
385 2c61_A A-type ATP synthase non 90.3 1.4 4.9E-05 49.7 11.7 35 198-232 141-177 (469)
386 3thx_A DNA mismatch repair pro 90.3 0.98 3.3E-05 55.4 11.1 81 207-288 662-751 (934)
387 1m2o_B GTP-binding protein SAR 90.3 0.14 4.6E-06 49.8 2.9 24 206-229 22-45 (190)
388 2qm8_A GTPase/ATPase; G protei 90.1 1.2 4.1E-05 47.9 10.6 34 199-232 44-80 (337)
389 1bif_A 6-phosphofructo-2-kinas 90.0 0.28 9.7E-06 55.2 5.7 28 206-233 38-65 (469)
390 2hf9_A Probable hydrogenase ni 90.0 0.28 9.5E-06 48.6 5.0 39 193-231 22-62 (226)
391 3c8u_A Fructokinase; YP_612366 89.9 0.19 6.6E-06 49.8 3.8 26 207-232 22-47 (208)
392 1gtv_A TMK, thymidylate kinase 89.9 0.11 3.7E-06 51.2 2.0 23 210-232 3-25 (214)
393 3a8t_A Adenylate isopentenyltr 89.8 0.15 5.1E-06 55.4 3.1 34 605-644 41-74 (339)
394 3def_A T7I23.11 protein; chlor 89.8 0.32 1.1E-05 50.2 5.5 24 206-229 35-58 (262)
395 1t6n_A Probable ATP-dependent 89.8 8.1 0.00028 37.8 15.7 24 207-230 51-74 (220)
396 2dyk_A GTP-binding protein; GT 89.7 0.15 5.3E-06 47.0 2.7 23 208-230 2-24 (161)
397 2ze6_A Isopentenyl transferase 89.7 0.23 8E-06 51.2 4.3 32 606-643 3-34 (253)
398 1q3t_A Cytidylate kinase; nucl 89.6 0.23 7.7E-06 50.3 4.1 26 206-231 15-40 (236)
399 1uj2_A Uridine-cytidine kinase 89.6 0.2 7E-06 51.3 3.8 47 207-255 22-68 (252)
400 2yhs_A FTSY, cell division pro 89.5 0.97 3.3E-05 51.5 9.5 29 602-632 291-319 (503)
401 1f6b_A SAR1; gtpases, N-termin 89.5 0.14 4.8E-06 50.1 2.4 33 196-228 12-46 (198)
402 2v9p_A Replication protein E1; 89.4 0.24 8.2E-06 53.0 4.3 29 206-235 125-153 (305)
403 2nzj_A GTP-binding protein REM 89.4 0.17 5.7E-06 47.5 2.7 23 207-229 4-26 (175)
404 2ffh_A Protein (FFH); SRP54, s 89.4 1.3 4.3E-05 49.6 10.2 39 603-644 97-135 (425)
405 1vht_A Dephospho-COA kinase; s 89.3 0.2 7E-06 49.7 3.5 22 208-229 5-26 (218)
406 4e22_A Cytidylate kinase; P-lo 89.3 0.19 6.4E-06 51.8 3.3 26 206-231 26-51 (252)
407 2z0m_A 337AA long hypothetical 89.2 1.5 5E-05 45.6 10.2 24 206-229 30-53 (337)
408 1svm_A Large T antigen; AAA+ f 89.2 0.34 1.1E-05 53.4 5.3 38 194-231 153-193 (377)
409 3lxw_A GTPase IMAP family memb 89.2 0.23 7.8E-06 51.0 3.8 24 206-229 20-43 (247)
410 1kao_A RAP2A; GTP-binding prot 89.1 0.19 6.6E-06 46.4 2.9 23 207-229 3-25 (167)
411 1ltq_A Polynucleotide kinase; 89.1 0.18 6.2E-06 52.7 3.0 23 208-230 3-25 (301)
412 1rz3_A Hypothetical protein rb 89.1 0.49 1.7E-05 46.6 6.0 55 586-644 5-59 (201)
413 3kb2_A SPBC2 prophage-derived 89.0 0.22 7.5E-06 47.0 3.3 23 606-630 3-25 (173)
414 1s2m_A Putative ATP-dependent 89.0 6.2 0.00021 42.2 15.2 23 207-229 58-80 (400)
415 1jjv_A Dephospho-COA kinase; P 89.0 0.18 6.3E-06 49.5 2.8 21 209-229 4-24 (206)
416 2r8r_A Sensor protein; KDPD, P 89.0 0.4 1.4E-05 49.2 5.3 83 603-689 5-94 (228)
417 2oxc_A Probable ATP-dependent 89.0 2.7 9.2E-05 41.9 11.5 26 206-231 60-86 (230)
418 1z2a_A RAS-related protein RAB 89.0 0.2 6.7E-06 46.6 2.9 24 207-230 5-28 (168)
419 3r20_A Cytidylate kinase; stru 89.0 0.22 7.5E-06 51.2 3.4 26 206-231 8-33 (233)
420 2ce2_X GTPase HRAS; signaling 89.0 0.2 6.7E-06 46.1 2.8 23 208-230 4-26 (166)
421 1m8p_A Sulfate adenylyltransfe 88.9 0.55 1.9E-05 54.5 7.1 39 208-253 397-436 (573)
422 2wji_A Ferrous iron transport 88.9 0.17 5.9E-06 47.7 2.5 22 208-229 4-25 (165)
423 2qt1_A Nicotinamide riboside k 88.9 0.23 7.8E-06 48.9 3.4 24 207-230 21-44 (207)
424 1u8z_A RAS-related protein RAL 88.8 0.21 7.1E-06 46.2 2.9 23 207-229 4-26 (168)
425 1nks_A Adenylate kinase; therm 88.7 0.3 1E-05 46.8 4.0 36 606-644 3-38 (194)
426 2wjg_A FEOB, ferrous iron tran 88.6 0.18 6.3E-06 48.1 2.5 23 207-229 7-29 (188)
427 1wb9_A DNA mismatch repair pro 88.6 1.2 4.1E-05 53.7 10.1 81 207-288 607-696 (800)
428 2f6r_A COA synthase, bifunctio 88.6 0.25 8.5E-06 51.8 3.6 24 206-229 74-97 (281)
429 1z0j_A RAB-22, RAS-related pro 88.6 0.22 7.4E-06 46.3 2.9 24 207-230 6-29 (170)
430 2oap_1 GSPE-2, type II secreti 88.6 1.2 4E-05 51.0 9.5 95 605-710 261-358 (511)
431 1qhx_A CPT, protein (chloramph 88.6 0.22 7.4E-06 47.6 2.9 33 606-644 5-37 (178)
432 3bh0_A DNAB-like replicative h 88.5 0.76 2.6E-05 48.9 7.4 50 206-266 67-116 (315)
433 2ehv_A Hypothetical protein PH 88.5 0.47 1.6E-05 47.5 5.6 24 603-628 29-52 (251)
434 1ek0_A Protein (GTP-binding pr 88.5 0.22 7.5E-06 46.2 2.9 22 208-229 4-25 (170)
435 2qmh_A HPR kinase/phosphorylas 88.5 0.21 7.2E-06 50.4 2.8 34 206-250 33-66 (205)
436 2atv_A RERG, RAS-like estrogen 88.5 0.22 7.4E-06 48.3 2.9 31 199-229 19-50 (196)
437 2lkc_A Translation initiation 88.4 0.23 8E-06 46.7 3.0 24 206-229 7-30 (178)
438 2f9l_A RAB11B, member RAS onco 88.4 0.22 7.5E-06 48.5 2.8 23 208-230 6-28 (199)
439 3foz_A TRNA delta(2)-isopenten 88.4 0.24 8.4E-06 53.2 3.4 34 605-644 11-44 (316)
440 3q85_A GTP-binding protein REM 88.3 0.22 7.4E-06 46.5 2.7 20 209-228 4-23 (169)
441 2rhm_A Putative kinase; P-loop 88.3 0.38 1.3E-05 46.3 4.5 24 605-630 6-29 (193)
442 2j37_W Signal recognition part 88.3 1.2 4.1E-05 50.9 9.2 39 602-643 99-139 (504)
443 1wms_A RAB-9, RAB9, RAS-relate 88.2 0.24 8.1E-06 46.6 2.9 24 206-229 6-29 (177)
444 1nrj_B SR-beta, signal recogni 88.2 0.24 8.3E-06 48.7 3.1 25 206-230 11-35 (218)
445 2r9v_A ATP synthase subunit al 88.2 1.2 4.3E-05 50.7 9.2 33 198-230 164-199 (515)
446 1c1y_A RAS-related protein RAP 88.2 0.24 8.1E-06 45.9 2.9 22 208-229 4-25 (167)
447 4b3f_X DNA-binding protein smu 88.2 0.55 1.9E-05 55.1 6.6 41 192-233 191-231 (646)
448 1kht_A Adenylate kinase; phosp 88.2 0.26 9.1E-06 47.2 3.3 24 606-631 5-28 (192)
449 1g16_A RAS-related protein SEC 88.1 0.24 8.1E-06 46.1 2.8 22 208-229 4-25 (170)
450 3q72_A GTP-binding protein RAD 88.1 0.21 7.3E-06 46.4 2.5 21 208-228 3-23 (166)
451 2zej_A Dardarin, leucine-rich 88.1 0.19 6.6E-06 48.3 2.2 22 208-229 3-24 (184)
452 3i8s_A Ferrous iron transport 88.1 0.54 1.9E-05 48.9 5.8 24 207-230 3-26 (274)
453 1y63_A LMAJ004144AAA protein; 88.1 0.22 7.6E-06 48.3 2.7 33 605-644 11-43 (184)
454 1oix_A RAS-related protein RAB 88.0 0.25 8.5E-06 48.0 3.0 23 208-230 30-52 (191)
455 1z08_A RAS-related protein RAB 88.0 0.25 8.7E-06 46.0 2.9 23 207-229 6-28 (170)
456 3mfy_A V-type ATP synthase alp 87.9 1.3 4.4E-05 51.1 9.1 33 198-230 216-250 (588)
457 1odf_A YGR205W, hypothetical 3 87.8 0.66 2.2E-05 49.1 6.3 43 587-631 12-56 (290)
458 1znw_A Guanylate kinase, GMP k 87.8 0.26 8.7E-06 48.9 3.0 20 210-229 23-42 (207)
459 2erx_A GTP-binding protein DI- 87.8 0.25 8.5E-06 45.9 2.7 22 208-229 4-25 (172)
460 1s96_A Guanylate kinase, GMP k 87.8 0.26 9E-06 49.9 3.1 26 206-231 15-40 (219)
461 1zp6_A Hypothetical protein AT 87.8 0.35 1.2E-05 46.6 3.9 36 603-644 8-43 (191)
462 3t61_A Gluconokinase; PSI-biol 87.8 0.38 1.3E-05 47.2 4.2 24 605-630 19-42 (202)
463 1r2q_A RAS-related protein RAB 87.8 0.26 8.9E-06 45.7 2.9 24 206-229 5-28 (170)
464 1z6g_A Guanylate kinase; struc 87.8 0.29 9.8E-06 49.2 3.3 26 206-231 22-47 (218)
465 3bc1_A RAS-related protein RAB 87.8 0.26 8.8E-06 46.9 2.9 23 207-229 11-33 (195)
466 2fn4_A P23, RAS-related protei 87.7 0.26 9E-06 46.3 2.9 25 206-230 8-32 (181)
467 2p5t_B PEZT; postsegregational 87.7 0.4 1.4E-05 49.2 4.4 36 603-644 31-66 (253)
468 2fh5_B SR-beta, signal recogni 87.7 0.28 9.7E-06 48.0 3.2 25 206-230 6-30 (214)
469 3uie_A Adenylyl-sulfate kinase 87.6 0.45 1.6E-05 46.7 4.7 29 601-631 22-50 (200)
470 1ky3_A GTP-binding protein YPT 87.6 0.27 9.4E-06 46.2 2.9 24 206-229 7-30 (182)
471 2iwr_A Centaurin gamma 1; ANK 87.5 0.25 8.5E-06 46.7 2.6 23 207-229 7-29 (178)
472 2v3c_C SRP54, signal recogniti 87.5 0.27 9.1E-06 55.1 3.2 37 207-250 99-135 (432)
473 1wf3_A GTP-binding protein; GT 87.5 0.79 2.7E-05 48.6 6.7 22 208-229 8-29 (301)
474 3i5x_A ATP-dependent RNA helic 87.4 3.7 0.00013 46.5 12.8 44 191-234 95-139 (563)
475 1xjc_A MOBB protein homolog; s 87.4 0.49 1.7E-05 46.3 4.6 25 209-233 6-30 (169)
476 3sfz_A APAF-1, apoptotic pepti 87.4 1 3.4E-05 55.8 8.6 107 581-691 126-248 (1249)
477 3asz_A Uridine kinase; cytidin 87.4 0.31 1E-05 48.0 3.3 22 210-231 9-30 (211)
478 4eaq_A DTMP kinase, thymidylat 87.4 0.29 1E-05 49.7 3.2 26 206-231 25-50 (229)
479 1htw_A HI0065; nucleotide-bind 87.4 0.3 1E-05 47.0 3.1 22 210-231 36-57 (158)
480 2cxx_A Probable GTP-binding pr 87.4 0.24 8.3E-06 47.1 2.4 21 209-229 3-23 (190)
481 2orv_A Thymidine kinase; TP4A 87.4 1.3 4.5E-05 45.5 8.0 107 604-722 18-129 (234)
482 2va8_A SSO2462, SKI2-type heli 87.4 3.8 0.00013 48.2 13.2 23 206-228 45-67 (715)
483 1upt_A ARL1, ADP-ribosylation 87.4 0.28 9.6E-06 45.7 2.8 24 206-229 6-29 (171)
484 4dsu_A GTPase KRAS, isoform 2B 87.3 0.29 9.8E-06 46.5 2.9 24 207-230 4-27 (189)
485 2hxs_A RAB-26, RAS-related pro 87.3 0.27 9.4E-06 46.2 2.7 24 206-229 5-28 (178)
486 3gqb_B V-type ATP synthase bet 87.3 1.1 3.9E-05 50.4 8.1 34 198-231 136-171 (464)
487 1gvn_B Zeta; postsegregational 87.2 0.72 2.4E-05 48.5 6.2 34 604-643 33-66 (287)
488 2qmh_A HPR kinase/phosphorylas 87.2 0.23 7.8E-06 50.1 2.2 33 605-644 35-67 (205)
489 2y8e_A RAB-protein 6, GH09086P 87.2 0.29 9.9E-06 45.9 2.8 23 207-229 14-36 (179)
490 1knq_A Gluconate kinase; ALFA/ 87.2 0.53 1.8E-05 44.8 4.7 26 603-630 7-32 (175)
491 1zuh_A Shikimate kinase; alpha 87.1 0.42 1.4E-05 45.3 4.0 25 604-630 7-31 (168)
492 3con_A GTPase NRAS; structural 87.1 0.29 1E-05 46.8 2.9 25 206-230 20-44 (190)
493 3tw8_B RAS-related protein RAB 87.1 0.27 9.3E-06 46.2 2.6 24 206-229 8-31 (181)
494 1m7b_A RND3/RHOE small GTP-bin 87.1 0.29 1E-05 46.8 2.8 24 206-229 6-29 (184)
495 3crm_A TRNA delta(2)-isopenten 87.0 0.32 1.1E-05 52.4 3.4 32 606-643 7-38 (323)
496 2g6b_A RAS-related protein RAB 87.0 0.3 1E-05 46.0 2.9 23 207-229 10-32 (180)
497 1z0f_A RAB14, member RAS oncog 87.0 0.31 1E-05 45.7 2.9 25 206-230 14-38 (179)
498 2a9k_A RAS-related protein RAL 86.9 0.31 1E-05 46.1 2.9 24 206-229 17-40 (187)
499 3t5g_A GTP-binding protein RHE 86.9 0.25 8.6E-06 46.8 2.2 24 206-229 5-28 (181)
500 1moz_A ARL1, ADP-ribosylation 86.9 0.23 7.8E-06 47.1 1.9 23 206-228 17-39 (183)
No 1
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=100.00 E-value=1e-69 Score=660.10 Aligned_cols=616 Identities=18% Similarity=0.259 Sum_probs=418.0
Q ss_pred cchhhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHhhcCCCChhhHHHHHHHHHHHhccCCCCC
Q 003769 7 AVPQALTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKALELCFNVALNRLPAST 86 (796)
Q Consensus 7 ~~~erfT~~A~~vL~~A~~~Ar~~gh~~VtpeHLLlaLL~~~~g~l~~iL~~~~gi~~~~d~~aL~~~l~~~L~rlp~~~ 86 (796)
|++++||++++++|..|+++|+++||++|+|+|||+|||.+++|.+.++|.+ +|+ +. +.++..++.++.++|...
T Consensus 1 ~~~~~~t~~a~~al~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~~~iL~~-~gv-d~---~~l~~~l~~~l~~~p~~~ 75 (854)
T 1qvr_A 1 MNLERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEK-AGA-DP---KALKELQERELARLPKVE 75 (854)
T ss_dssp ---CCSCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSSSSHHHHHHHT-TSS-CH---HHHHHHHHHHHHTSCCCC
T ss_pred CChhhhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCcHHHHHHHH-cCC-CH---HHHHHHHHHHHhhCCCCC
Confidence 5789999999999999999999999999999999999999999999999999 999 76 999999999999988654
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHhccchhhhhhhcccccccccCHHHHHHHHhcCChHHHHHHHcCCChH
Q 003769 87 ITSPLLGPHRHSPRPSLSNALVAAFKRAQAHQRRGSIENQQQQQQQPVLALKIEVEQLVISILDDPSVSRVMREAGFSSS 166 (796)
Q Consensus 87 ~~~~~~~~~~~~~~~~~S~~l~~aL~~A~~~a~~~~lg~~~~~~~~~~l~~kI~~eHLLLALL~d~~~a~vL~~~Gis~~ 166 (796)
+. +. .++||+.++++|+.|+.+|+. +|++| |+++|||+||++++... ++..
T Consensus 76 ~~-----~~----~~~~S~~~~~vL~~A~~~a~~--~g~~~-----------I~~ehlLlall~~~~~~-------~~~~ 126 (854)
T 1qvr_A 76 GA-----EV----GQYLTSRLSGALNRAEGLMEE--LKDRY-----------VAVDTLVLALAEATPGL-------PGLE 126 (854)
T ss_dssp GG-----GT----TCEECHHHHHHHHHHHHHHHT--TTCSS-----------CCHHHHHHHHHHHSTTS-------CCHH
T ss_pred CC-----CC----CCCCCHHHHHHHHHHHHHHHH--cCCcE-----------eeHHHHHHHHHhccccc-------CCHH
Confidence 31 11 589999999999999999987 89998 99999999999865321 8888
Q ss_pred HHHHHHHhhcc-CCCCCCCC-------------------CCCCCC---ChHHHHHHHHHHhh-ccCceEEEcCCcccHHH
Q 003769 167 QVKIKVEENVP-LGICSQST-------------------NKSLGR---DSDDVMSVLNALIN-KKRNTVIVGGNLAAIEG 222 (796)
Q Consensus 167 ~l~~~v~~~v~-~~~~s~~p-------------------~g~ldp---r~~ei~~vi~~L~r-~k~n~vLvGepGvGKTa 222 (796)
.++..+.+... ....+..+ .+++|| |++++++++++|.+ +++|++|+||||||||+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~ 206 (854)
T 1qvr_A 127 ALKGALKELRGGRTVQTEHAESTYNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTA 206 (854)
T ss_dssp HHHHHHTSSCSCCSSCSSCCCCCCSHHHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHH
T ss_pred HHHHHHHHhccccccccccccccchhHHHHHHhHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHH
Confidence 89888864322 11111111 477888 99999999999999 99999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCceEEEeecccccc--cchHHHHHHHHHHHHHHHhccCCCEEEEEcchhhhhhhhcccCCC
Q 003769 223 VIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN--QSKGEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGG 300 (796)
Q Consensus 223 iv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a--~~rge~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~ 300 (796)
+|+++|+++..+++|..|++.+++.++++.+.+ .|+|+++++++.+++.++.. ++++||||||+|++.+. |+
T Consensus 207 la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~-~~~~iL~IDEi~~l~~~-----~~ 280 (854)
T 1qvr_A 207 IVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQS-QGEVILFIDELHTVVGA-----GK 280 (854)
T ss_dssp HHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTT-CSSEEEEECCC-------------
T ss_pred HHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhc-CCCeEEEEecHHHHhcc-----CC
Confidence 999999999999999999999999999999985 79999999999999999874 57899999999999987 43
Q ss_pred CccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccccccceecccCCCCccccccc----
Q 003769 301 DEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTIPVGSLSLSLNI---- 376 (796)
Q Consensus 301 ~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp~~~l~~sl~~---- 376 (796)
.+| ..++.+. |++++ ++|.+++||+||..+|++ ++.||+|.+||+ .|.+|.|+.......
T Consensus 281 ~~g--------~~~~~~~-L~~~l----~~~~i~~I~at~~~~~~~-~~~d~aL~rRf~--~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 281 AEG--------AVDAGNM-LKPAL----ARGELRLIGATTLDEYRE-IEKDPALERRFQ--PVYVDEPTVEETISILRGL 344 (854)
T ss_dssp --------------------HHHH----HTTCCCEEEEECHHHHHH-HTTCTTTCSCCC--CEEECCCCHHHHHHHHHHH
T ss_pred ccc--------hHHHHHH-HHHHH----hCCCeEEEEecCchHHhh-hccCHHHHhCCc--eEEeCCCCHHHHHHHHHhh
Confidence 443 5677788 88877 389999999999999999 899999999986 466666553322100
Q ss_pred CCCCCCccceEeccchhcccccCCCccccchhhcchhhhhhhhhccccchhhhhHHHHhhhhhhHhHHHHh-------cC
Q 003769 377 DSDSPPTHQFITTNKVQRDGLISWPLLESGAEHLNHLNCSSNVSVNYFNREGQSMATSIIHKKKSAVAVAK-------ST 449 (796)
Q Consensus 377 ~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~e~~~l~~~~~~~~~~~~~~~~-------~~ 449 (796)
...+..+|++.+++. .+..+...+.+|..+ ..++++++++++++. .+
T Consensus 345 ~~~~~~~~~~~i~~~--------------------al~~~~~ls~r~i~~------~~lp~kai~lldea~a~~~~~~~~ 398 (854)
T 1qvr_A 345 KEKYEVHHGVRISDS--------------------AIIAAATLSHRYITE------RRLPDKAIDLIDEAAARLRMALES 398 (854)
T ss_dssp HHHHHHHTTCEECHH--------------------HHHHHHHHHHHHCCS------SCTHHHHHHHHHHHHHHHHHTTTT
T ss_pred hhhhhhhcCCCCCHH--------------------HHHHHHHHHhhhccc------ccChHHHHHHHHHHHHHHHhhccC
Confidence 000012445554321 111222333333221 012333333333322 12
Q ss_pred CchHHHhhHHH--------------------------HHhhhhhhhHHHHHHHHHHhhccc--ccc-ccCC-------CC
Q 003769 450 LPSWLQQYKEE--------------------------SRRNSNMINDNQDLCEKWNSFGNK--QTH-FSSS-------SP 493 (796)
Q Consensus 450 lp~~l~~~~~~--------------------------~~~~~~~~~~~~~L~~kw~~~~~~--~l~-~~s~-------~~ 493 (796)
.|.+++..... .++...+..++..+..+|...+.. .+. +... ..
T Consensus 399 ~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (854)
T 1qvr_A 399 APEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIE 478 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34443322110 011223344566778888776542 000 0000 00
Q ss_pred CCcccchhHhhh-----ccccccccccccc-cccccccCCCCCCCCCCCCCCCCCCCCCCccccccc-cccccc------
Q 003769 494 SSISVSSQECKQ-----LLPKEHQFWVCEG-YESSLRSNHHPKPDLLSNPNSSPNSASSSEAAEEDS-DCLNSF------ 560 (796)
Q Consensus 494 ~~~s~s~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------ 560 (796)
.+.....++... .++..... +.. +......++..++ +. . .++ ..++++
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----------v~-----~--~~l~~~v~~~~~ip~~ 539 (854)
T 1qvr_A 479 LAERQYDLNRAAELRYGELPKLEAE--VEALSEKLRGARFVRLE----------VT-----E--EDIAEIVSRWTGIPVS 539 (854)
T ss_dssp HHTTTTCHHHHHHHHTTHHHHHHHH--HHHHHHHSSSCSSCCSE----------EC-----H--HHHHHHHHTTSSCHHH
T ss_pred HHHhcccHHHHHHHhhhhhHHHHHH--HHHHHhhhcccccccCC----------cC-----H--HHHHHHHHHHhCCChH
Confidence 000000010000 00000000 000 0000000000000 00 0 000 012233
Q ss_pred --ccccHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHhhc-----cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCC
Q 003769 561 --NKFTDENLKVLSDALERKAVVPWQKEIMPEIARTILECRS-----KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGS 633 (796)
Q Consensus 561 --~~~~~e~L~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~rs-----~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~ 633 (796)
...+.+++..|++.|.++ |+||++++..|..+|.+.|+ ++|.++|||+||+| +|||++|++||+.+|++
T Consensus 540 ~~~~~~~~~l~~l~~~l~~~--viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~G--tGKT~lA~~la~~~~~~ 615 (854)
T 1qvr_A 540 KLLEGEREKLLRLEEELHKR--VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTG--VGKTELAKTLAATLFDT 615 (854)
T ss_dssp HTTCCHHHHHHSHHHHHHHH--SCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSS--SSHHHHHHHHHHHHHSS
T ss_pred hhcHHHHHHHHHHHHHHhcc--cCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCC--CCHHHHHHHHHHHhcCC
Confidence 334567888999999999 99999999999999999986 57889999999999 99999999999999998
Q ss_pred CCCceEEecCCCCccccccccccCCC-CCCCCCCchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEe
Q 003769 634 HSNNFTNLSSSQSRQDDCRTKKRSRD-VELGCCSYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIA 712 (796)
Q Consensus 634 ~~~~~i~~dms~~~~~~~~~~k~~~~-~~~~~~~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~ 712 (796)
. ..|+++||+++ ++.+..+.+.|+ ++|.|+...+.|+++++++|++||||||||++ |+ ++++.|+|+||+|+++
T Consensus 616 ~-~~~i~i~~~~~-~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l--~~-~~~~~Ll~~l~~~~~~ 690 (854)
T 1qvr_A 616 E-EAMIRIDMTEY-MEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKA--HP-DVFNILLQILDDGRLT 690 (854)
T ss_dssp G-GGEEEECTTTC-CSSGGGGGC--------------CHHHHHHHCSSEEEEESSGGGS--CH-HHHHHHHHHHTTTEEC
T ss_pred C-CcEEEEechhc-cchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEeccccc--CH-HHHHHHHHHhccCceE
Confidence 8 89999999998 577777777775 57777766689999999999999999999999 99 9999999999999999
Q ss_pred cCCCceecCCcEEEEeeCCC
Q 003769 713 LADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 713 d~~G~~v~~~n~IiilTsn~ 732 (796)
|+.|++|||+|+|||||||.
T Consensus 691 ~~~g~~vd~~~~iiI~tsn~ 710 (854)
T 1qvr_A 691 DSHGRTVDFRNTVIILTSNL 710 (854)
T ss_dssp CSSSCCEECTTEEEEEECCT
T ss_pred CCCCCEeccCCeEEEEecCc
Confidence 99999999999999999994
No 2
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=1e-67 Score=634.87 Aligned_cols=564 Identities=17% Similarity=0.285 Sum_probs=397.7
Q ss_pred cchhhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHhhcCCCChhhHHHHHHHHHHHhccCCCCC
Q 003769 7 AVPQALTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKALELCFNVALNRLPAST 86 (796)
Q Consensus 7 ~~~erfT~~A~~vL~~A~~~Ar~~gh~~VtpeHLLlaLL~~~~g~l~~iL~~~~gi~~~~d~~aL~~~l~~~L~rlp~~~ 86 (796)
|||++||++++++|..|+++|+++||++|+|||||+|||.+++|.+.++|.+ +|+ +. +.++..++.++++.|...
T Consensus 1 mm~~~~t~~a~~~l~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~-~gv-d~---~~l~~~l~~~l~~~~~~~ 75 (758)
T 3pxi_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQA-LGL-GS---EKIQKEVESLIGRGQEMS 75 (758)
T ss_dssp --CCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHH-HTC-CH---HHHHHHHHTTSCCCCTTC
T ss_pred CchhhhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHH-cCC-CH---HHHHHHHHHHhccCCCCC
Confidence 5889999999999999999999999999999999999999999999999999 999 76 999999998888766431
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHhccchhhhhhhcccccccccCHHHHHHHHhcCC--hHHHHHHHcCCC
Q 003769 87 ITSPLLGPHRHSPRPSLSNALVAAFKRAQAHQRRGSIENQQQQQQQPVLALKIEVEQLVISILDDP--SVSRVMREAGFS 164 (796)
Q Consensus 87 ~~~~~~~~~~~~~~~~~S~~l~~aL~~A~~~a~~~~lg~~~~~~~~~~l~~kI~~eHLLLALL~d~--~~a~vL~~~Gis 164 (796)
+ .++||+.++++|+.|+.+|++ +|++| |+++|||+||++++ .++++|+++|++
T Consensus 76 -------~-----~~~~s~~~~~vl~~A~~~A~~--~~~~~-----------I~~ehlLlall~~~~~~a~~~L~~~gv~ 130 (758)
T 3pxi_A 76 -------Q-----TIHYTPRAKKVIELSMDEARK--LGHSY-----------VGTEHILLGLIREGEGVAARVLNNLGVS 130 (758)
T ss_dssp -------S-----SCEECHHHHHHHHHHHHHHHT--TTCSS-----------BCHHHHHHHHHHTCCSHHHHHHHHTTCC
T ss_pred -------C-----CCCCCHHHHHHHHHHHHHHHH--cCCCc-----------ccHHHHHHHHHhcCCcHHHHHHHHcCCC
Confidence 1 589999999999999999987 99999 99999999999864 468999999999
Q ss_pred hHHHHHHHHhhccCC-CCCC----C-------------------CCCCCCC---ChHHHHHHHHHHhh-ccCceEEEcCC
Q 003769 165 SSQVKIKVEENVPLG-ICSQ----S-------------------TNKSLGR---DSDDVMSVLNALIN-KKRNTVIVGGN 216 (796)
Q Consensus 165 ~~~l~~~v~~~v~~~-~~s~----~-------------------p~g~ldp---r~~ei~~vi~~L~r-~k~n~vLvGep 216 (796)
.+.+++.+.+..... ..+. . ..+++|| |++++++++++|.+ +++|++|+|||
T Consensus 131 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~p 210 (758)
T 3pxi_A 131 LNKARQQVLQLLGSNETGSSAAGTNSNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 210 (758)
T ss_dssp HHHHHHHHHTTCCCCCTTC-----CCSTHHHHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCT
T ss_pred HHHHHHHHHHHhcCCcccccccccccchhhhHHHHHHHHHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCC
Confidence 999999998655311 1110 0 1477888 99999999999999 99999999999
Q ss_pred cccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEcchhhhhhhhcc
Q 003769 217 LAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWAN 296 (796)
Q Consensus 217 GvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~ 296 (796)
|||||++|++||+++..+++|..+.+.+++.+|+ ..+|+|+||.+++.+++++.. .+++||||| +
T Consensus 211 GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~--~~~~iLfiD------~---- 275 (758)
T 3pxi_A 211 GVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQ--AGNIILFID------A---- 275 (758)
T ss_dssp TTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHT--CCCCEEEEC------C----
T ss_pred CCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHHHh--cCCEEEEEc------C----
Confidence 9999999999999999999999999999999997 457999999999999999997 578999999 2
Q ss_pred cCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccccccceecccCCCCccccc--
Q 003769 297 YYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTIPVGSLSLSL-- 374 (796)
Q Consensus 297 ~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp~~~l~~sl-- 374 (796)
.++..+. |++++ ++|.++|||+||+.+|+++++.||+|.||| +.|.++.|+.....
T Consensus 276 ---------------~~~~~~~-L~~~l----~~~~v~~I~at~~~~~~~~~~~d~al~rRf--~~i~v~~p~~~~~~~i 333 (758)
T 3pxi_A 276 ---------------AIDASNI-LKPSL----ARGELQCIGATTLDEYRKYIEKDAALERRF--QPIQVDQPSVDESIQI 333 (758)
T ss_dssp ------------------------CCCT----TSSSCEEEEECCTTTTHHHHTTCSHHHHSE--EEEECCCCCHHHHHHH
T ss_pred ---------------chhHHHH-HHHHH----hcCCEEEEeCCChHHHHHHhhccHHHHhhC--cEEEeCCCCHHHHHHH
Confidence 2345555 66665 489999999999999999999999999998 45666655543321
Q ss_pred -c-cCCCCCCccceEeccchhcccccCCCccccchhhcchhhhhhhhhccccchhhhhHHHHhhhhhhHhHHHHh-----
Q 003769 375 -N-IDSDSPPTHQFITTNKVQRDGLISWPLLESGAEHLNHLNCSSNVSVNYFNREGQSMATSIIHKKKSAVAVAK----- 447 (796)
Q Consensus 375 -~-~~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~e~~~l~~~~~~~~~~~~~~~~----- 447 (796)
. ....+..+|++.+++. .+..+...+.+|..+ ..++++++++++++.
T Consensus 334 l~~~~~~~~~~~~~~i~~~--------------------al~~~~~~s~~~i~~------~~~p~~ai~ll~~a~~~~~~ 387 (758)
T 3pxi_A 334 LQGLRDRYEAHHRVSITDD--------------------AIEAAVKLSDRYISD------RFLPDKAIDLIDEAGSKVRL 387 (758)
T ss_dssp HHHTTTTSGGGSSCSCCHH--------------------HHHHHHHHHHHSSCC------SCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHH--------------------HHHHHHHHhhccccc------CcCCcHHHHHHHHHHHHHHh
Confidence 1 0111123455443321 112333334444321 012334444443332
Q ss_pred --cCCchHHHhhHHH------HHh-h--hhhhhHHHHHHHHHHhhccccccccCCCCCCcccchhHhhhccccccccccc
Q 003769 448 --STLPSWLQQYKEE------SRR-N--SNMINDNQDLCEKWNSFGNKQTHFSSSSPSSISVSSQECKQLLPKEHQFWVC 516 (796)
Q Consensus 448 --~~lp~~l~~~~~~------~~~-~--~~~~~~~~~L~~kw~~~~~~~l~~~s~~~~~~s~s~~~~~~~~~~~~~~~~~ 516 (796)
...|..+...... +.+ . ..-.+...++.+++..+... + ......|.-
T Consensus 388 ~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------------l------~~~~~~~~~ 445 (758)
T 3pxi_A 388 RSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQ----------------V------EDTKKSWKE 445 (758)
T ss_dssp HTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH----------------H------HHHHSGGGH
T ss_pred hccCCCcchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHH----------------H------HHHHHHHHH
Confidence 1222222111100 000 0 00000111122222111110 0 000000100
Q ss_pred c----------ccccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccHHHHHHHHHHhhcCCCCCCcch
Q 003769 517 E----------GYESSLRSNHHPKPDLLSNPNSSPNSASSSEAAEEDSDCLNSFNKFTDENLKVLSDALERKAVVPWQKE 586 (796)
Q Consensus 517 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~l~~~L~~~~~v~gQ~~ 586 (796)
+ .+...+.+.|.+.| +.++...+.+++..|++.|.++ |+||++
T Consensus 446 ~~~~~~~~v~~~~i~~~v~~~~~ip-------------------------~~~~~~~~~~~l~~l~~~l~~~--viGq~~ 498 (758)
T 3pxi_A 446 KQGQENSEVTVDDIAMVVSSWTGVP-------------------------VSKIAQTETDKLLNMENILHSR--VIGQDE 498 (758)
T ss_dssp HHHCC---CCTHHHHHHHHTTC--------------------------------CHHHHSCC-CHHHHHHTT--SCSCHH
T ss_pred hhcccCcccCHHHHHHHHHHHhCCC-------------------------hHHhhHHHHHHHHHHHHHHhCc--CcChHH
Confidence 0 00011122222221 1222333445677889999999 999999
Q ss_pred HHHHHHHHHHHhhc-----cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCC
Q 003769 587 IMPEIARTILECRS-----KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVE 661 (796)
Q Consensus 587 av~~ia~~i~~~rs-----~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~ 661 (796)
++..|+.+|.++++ .+|.++|||+||+| +|||.+|++||+.+|++. .+|+++||+++ ++.+..+
T Consensus 499 a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~G--tGKT~lA~ala~~l~~~~-~~~i~i~~s~~-~~~~~~~------- 567 (758)
T 3pxi_A 499 AVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTG--VGKTELARALAESIFGDE-ESMIRIDMSEY-MEKHSTS------- 567 (758)
T ss_dssp HHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTT--SSHHHHHHHHHHHHHSCT-TCEEEEEGGGG-CSSCCCC-------
T ss_pred HHHHHHHHHHHHHcccCCCCCCceEEEEECCCC--CCHHHHHHHHHHHhcCCC-cceEEEechhc-ccccccc-------
Confidence 99999999999987 57889999999999 999999999999999998 99999999988 4555321
Q ss_pred CCCCCchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 662 LGCCSYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 662 ~~~~~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
.+.|+++++++||+||||||||++ |+ ++++.|+|+||+|+++|..|++++|.|++||||||.
T Consensus 568 ------~~~l~~~~~~~~~~vl~lDEi~~~--~~-~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 568 ------GGQLTEKVRRKPYSVVLLDAIEKA--HP-DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ---------CHHHHHHCSSSEEEEECGGGS--CH-HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ------cchhhHHHHhCCCeEEEEeCcccc--CH-HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 357899999999999999999999 99 999999999999999999999999999999999994
No 3
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=1.8e-66 Score=623.81 Aligned_cols=556 Identities=16% Similarity=0.231 Sum_probs=419.0
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHhhcCCCChhhHHHHHHHHHHHhcc-CCCCCCCCC
Q 003769 12 LTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKALELCFNVALNR-LPASTITSP 90 (796)
Q Consensus 12 fT~~A~~vL~~A~~~Ar~~gh~~VtpeHLLlaLL~~~~g~l~~iL~~~~gi~~~~d~~aL~~~l~~~L~r-lp~~~~~~~ 90 (796)
||++++++|..|+++|+++||++|+|||||+|||.+ +.+.++|.+ +|+ +. +.++..++.++++ .|...+...
T Consensus 2 ~t~~a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~--~~~~~iL~~-~gv-d~---~~l~~~l~~~l~~~~p~~~~~~~ 74 (758)
T 1r6b_X 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSN--PSAREALEA-CSV-DL---VALRQELEAFIEQTTPVLPASEE 74 (758)
T ss_dssp BCHHHHHHHHHHHHHHHHTTBSEECHHHHHHHHTTS--HHHHHHHHH-TTC-CH---HHHHHHHHHHHHHHSCBCCCSSS
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHcC--cHHHHHHHH-cCC-CH---HHHHHHHHHHHhccCCCCCCccc
Confidence 999999999999999999999999999999999985 458899999 999 76 9999999999987 775432100
Q ss_pred CCCCCCCCCCCcccHHHHHHHHHHHHHHHhccchhhhhhhcccccccccCHHHHHHHHhcCC--hHHHHHHHcCCChHHH
Q 003769 91 LLGPHRHSPRPSLSNALVAAFKRAQAHQRRGSIENQQQQQQQPVLALKIEVEQLVISILDDP--SVSRVMREAGFSSSQV 168 (796)
Q Consensus 91 ~~~~~~~~~~~~~S~~l~~aL~~A~~~a~~~~lg~~~~~~~~~~l~~kI~~eHLLLALL~d~--~~a~vL~~~Gis~~~l 168 (796)
.. .++||+.++++|+.|+.+|+. +|++| |+++|||+||++++ .+.++|+++|++...+
T Consensus 75 ---~~----~~~~s~~~~~vl~~A~~~a~~--~~~~~-----------I~~ehlLlall~~~~~~a~~~L~~~gi~~~~l 134 (758)
T 1r6b_X 75 ---ER----DTQPTLSFQRVLQRAVFHVQS--SGRNE-----------VTGANVLVAIFSEQESQAAYLLRKHEVSRLDV 134 (758)
T ss_dssp ---CC----CCEECHHHHHHHHHHHHHHHH--HTCSS-----------BCHHHHHHHHTTCTTCHHHHHHHHTTCCHHHH
T ss_pred ---cC----CCCcCHHHHHHHHHHHHHHHH--cCCCE-----------eeHHHHHHHHhccccchHHHHHHHcCCCHHHH
Confidence 01 589999999999999999998 88998 99999999999864 3689999999999999
Q ss_pred HHHHHhhccCC---------CC-C-CC-----C--------------CCCCCC---ChHHHHHHHHHHhh-ccCceEEEc
Q 003769 169 KIKVEENVPLG---------IC-S-QS-----T--------------NKSLGR---DSDDVMSVLNALIN-KKRNTVIVG 214 (796)
Q Consensus 169 ~~~v~~~v~~~---------~~-s-~~-----p--------------~g~ldp---r~~ei~~vi~~L~r-~k~n~vLvG 214 (796)
.+.+.+..... .. + .. + .+++|| |++++++++++|.+ +++|++|+|
T Consensus 135 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G 214 (758)
T 1r6b_X 135 VNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERLENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVG 214 (758)
T ss_dssp HHHHHTC---------------------------CCSSSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEEC
T ss_pred HHHHHHhhccccccccccccccccccccccchhHHHHHhHhHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEc
Confidence 88876432110 10 0 01 0 367888 99999999999999 999999999
Q ss_pred CCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc--cchHHHHHHHHHHHHHHHhccCCCEEEEEcchhhhhh
Q 003769 215 GNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN--QSKGEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAE 292 (796)
Q Consensus 215 epGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a--~~rge~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~ 292 (796)
|||||||++|++|++++..+.+|..+.+.+++.++++.+.+ +|+|+++++++.+++.+.. .++.||||||+|++++
T Consensus 215 ~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~--~~~~iL~IDEi~~l~~ 292 (758)
T 1r6b_X 215 ESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ--DTNSILFIDEIHTIIG 292 (758)
T ss_dssp CTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSS--SSCEEEEETTTTTTTT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHh--cCCeEEEEechHHHhh
Confidence 99999999999999999999999999999999999999885 7999999999999999986 4679999999999998
Q ss_pred hhcccCCCC-ccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccccccceecccCCCCcc
Q 003769 293 FWANYYGGD-EQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTIPVGSLS 371 (796)
Q Consensus 293 ~~~~~~G~~-~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp~~~l~ 371 (796)
+ |+. ++ .++..+. |++++ ++|.+++||+||+.+|.++++.||+|.+||+ .|.++.|+..
T Consensus 293 ~-----~~~~~~--------~~~~~~~-L~~~l----~~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~--~i~v~~p~~~ 352 (758)
T 1r6b_X 293 A-----GAASGG--------QVDAANL-IKPLL----SSGKIRVIGSTTYQEFSNIFEKDRALARRFQ--KIDITEPSIE 352 (758)
T ss_dssp S-----CCSSSC--------HHHHHHH-HSSCS----SSCCCEEEEEECHHHHHCCCCCTTSSGGGEE--EEECCCCCHH
T ss_pred c-----CCCCcc--------hHHHHHH-HHHHH----hCCCeEEEEEeCchHHhhhhhcCHHHHhCce--EEEcCCCCHH
Confidence 7 433 23 6777777 77776 4899999999999999999999999999985 5666665544
Q ss_pred cccccCC----CCCCccceEeccchhcccccCCCccccchhhcchhhhhhhhhccccchhhhhHHHHhhhhhhHhHHHHh
Q 003769 372 LSLNIDS----DSPPTHQFITTNKVQRDGLISWPLLESGAEHLNHLNCSSNVSVNYFNREGQSMATSIIHKKKSAVAVAK 447 (796)
Q Consensus 372 ~sl~~~s----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~e~~~l~~~~~~~~~~~~~~~~ 447 (796)
.....-. .+..+|++.++ +. .+..+...+.+|.. .
T Consensus 353 e~~~il~~l~~~~~~~~~v~~~--------------~~------al~~~~~~s~~~i~---------------------~ 391 (758)
T 1r6b_X 353 ETVQIINGLKPKYEAHHDVRYT--------------AK------AVRAAVELAVKYIN---------------------D 391 (758)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCC--------------HH------HHHHHHHHHHHHCT---------------------T
T ss_pred HHHHHHHHHHHHHHHhcCCCCC--------------HH------HHHHHHHHhhhhcc---------------------c
Confidence 3211000 00001111110 00 00011111111110 0
Q ss_pred cCCchHHHhhHHHHHhhhhhhhHHHHHHHHHHhhccccccccCCCCCCcccchhHhhhccccccccccccccccccccCC
Q 003769 448 STLPSWLQQYKEESRRNSNMINDNQDLCEKWNSFGNKQTHFSSSSPSSISVSSQECKQLLPKEHQFWVCEGYESSLRSNH 527 (796)
Q Consensus 448 ~~lp~~l~~~~~~~~~~~~~~~~~~~L~~kw~~~~~~~l~~~s~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (796)
..+|..+. ++.++...... +.-.+. ....++ .+ +.......|
T Consensus 392 ~~lp~~~i-----------------~lld~a~~~~~--~~~~~~--~~~~v~-~~----------------di~~~~~~~ 433 (758)
T 1r6b_X 392 RHLPDKAI-----------------DVIDEAGARAR--LMPVSK--RKKTVN-VA----------------DIESVVARI 433 (758)
T ss_dssp SCTTHHHH-----------------HHHHHHHHHHH--HSSSCC--CCCSCC-HH----------------HHHHHHHHH
T ss_pred ccCchHHH-----------------HHHHHHHHHHh--cccccc--cCCccC-HH----------------HHHHHHHHh
Confidence 12332221 22211111100 000000 000011 00 000111122
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccccccccccccccccHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHhhc-----cC
Q 003769 528 HPKPDLLSNPNSSPNSASSSEAAEEDSDCLNSFNKFTDENLKVLSDALERKAVVPWQKEIMPEIARTILECRS-----KK 602 (796)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~rs-----~~ 602 (796)
.++| ..++...+.+++..|++.|.+. |+||++++..|..++.+.++ ++
T Consensus 434 ~~ip-------------------------~~~~~~~~~~~l~~l~~~l~~~--v~g~~~~~~~l~~~i~~~~~g~~~~~~ 486 (758)
T 1r6b_X 434 ARIP-------------------------EKSVSQSDRDTLKNLGDRLKML--VFGQDKAIEALTEAIKMARAGLGHEHK 486 (758)
T ss_dssp SCCC-------------------------CCCSSSSHHHHHHHHHHHHTTT--SCSCHHHHHHHHHHHHHHHTTCSCTTS
T ss_pred cCCC-------------------------ccccchhHHHHHHHHHHHHHhh--ccCHHHHHHHHHHHHHHHhcccCCCCC
Confidence 2221 0122234457899999999999 99999999999999999886 57
Q ss_pred CCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCC-CCCCCCCchhhHHHHHHhCCCE
Q 003769 603 EQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD-VELGCCSYIERLGLALNENPHR 681 (796)
Q Consensus 603 ~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~-~~~~~~~~~~~L~eavr~~P~~ 681 (796)
|.++|||+||+| +|||++|++||+.+ + .+|+++||+++ ++.|+++++.|. +||.|....++|++++++.||+
T Consensus 487 p~~~~ll~G~~G--tGKT~la~~la~~l-~---~~~~~i~~s~~-~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~ 559 (758)
T 1r6b_X 487 PVGSFLFAGPTG--VGKTEVTVQLSKAL-G---IELLRFDMSEY-MERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHA 559 (758)
T ss_dssp CSEEEEEECSTT--SSHHHHHHHHHHHH-T---CEEEEEEGGGC-SSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSE
T ss_pred CceEEEEECCCC--CcHHHHHHHHHHHh-c---CCEEEEechhh-cchhhHhhhcCCCCCCcCccccchHHHHHHhCCCc
Confidence 999999999999 99999999999999 3 56999999999 788888898886 4566554456899999999999
Q ss_pred EEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 682 VFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 682 Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
|||||||||+ |+ ++++.|+|+||+|+++|+.|++++|+|+|||||||.
T Consensus 560 vl~lDEi~~~--~~-~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~ 607 (758)
T 1r6b_X 560 VLLLDEIEKA--HP-DVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNA 607 (758)
T ss_dssp EEEEETGGGS--CH-HHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECS
T ss_pred EEEEeCcccc--CH-HHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCc
Confidence 9999999999 99 999999999999999999999999999999999994
No 4
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=100.00 E-value=6.4e-45 Score=414.85 Aligned_cols=298 Identities=16% Similarity=0.269 Sum_probs=245.3
Q ss_pred cchhhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHhhcCCCChhhHHHHHHHHHHHhccCCCCC
Q 003769 7 AVPQALTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKALELCFNVALNRLPAST 86 (796)
Q Consensus 7 ~~~erfT~~A~~vL~~A~~~Ar~~gh~~VtpeHLLlaLL~~~~g~l~~iL~~~~gi~~~~d~~aL~~~l~~~L~rlp~~~ 86 (796)
|||++||++++++|..|+++|+++||++|+|||||+|||.+++|.+..+|.+ +|+ +. +.|+..++..+.+.|...
T Consensus 1 mm~~~ft~~a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL~~-~gv-d~---~~l~~~l~~~l~~~~~~~ 75 (468)
T 3pxg_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQA-LGL-GS---EKIQKEVESLIGRGQEMS 75 (468)
T ss_dssp --CCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHH-HTC-CH---HHHHHHHHTTSCCCCTTC
T ss_pred CcchhhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHH-cCC-CH---HHHHHHHHHHhcccCCCC
Confidence 5889999999999999999999999999999999999999999999999999 999 76 999999998887665321
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHhccchhhhhhhcccccccccCHHHHHHHHhcCC--hHHHHHHHcCCC
Q 003769 87 ITSPLLGPHRHSPRPSLSNALVAAFKRAQAHQRRGSIENQQQQQQQPVLALKIEVEQLVISILDDP--SVSRVMREAGFS 164 (796)
Q Consensus 87 ~~~~~~~~~~~~~~~~~S~~l~~aL~~A~~~a~~~~lg~~~~~~~~~~l~~kI~~eHLLLALL~d~--~~a~vL~~~Gis 164 (796)
+ .|+||+.++++|+.|+.+|++ +|++| |+++|||+||++++ .+.++|+++|++
T Consensus 76 -------~-----~~~~S~~~~~vL~~A~~~A~~--~g~~~-----------I~teHLLlaLl~~~~~~a~~iL~~~gv~ 130 (468)
T 3pxg_A 76 -------Q-----TIHYTPRAKKVIELSMDEARK--LGHSY-----------VGTEHILLGLIREGEGVAARVLNNLGVS 130 (468)
T ss_dssp -------S-----SCEECHHHHHHHHHHHHHHHT--TTCSS-----------BCHHHHHHHHHHTCCSHHHHHHHHTTCC
T ss_pred -------C-----CCCCCHHHHHHHHHHHHHHHH--cCCCe-----------ecHHHHHHHHHhcccchHHHHHHHcCCC
Confidence 1 488999999999999999987 99999 99999999999874 468999999999
Q ss_pred hHHHHHHHHhhccCC-CC----CC-------------------CCCCCCCC---ChHHHHHHHHHHhh-ccCceEEEcCC
Q 003769 165 SSQVKIKVEENVPLG-IC----SQ-------------------STNKSLGR---DSDDVMSVLNALIN-KKRNTVIVGGN 216 (796)
Q Consensus 165 ~~~l~~~v~~~v~~~-~~----s~-------------------~p~g~ldp---r~~ei~~vi~~L~r-~k~n~vLvGep 216 (796)
.+.+++.+.+..... .. +. ...+++|| |++++++++++|.| +++|++|+|||
T Consensus 131 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~p 210 (468)
T 3pxg_A 131 LNKARQQVLQLLGSNETGSSAAGTNSNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 210 (468)
T ss_dssp HHHHHHHHHTTCCCCCTTC-----CCSTHHHHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCT
T ss_pred HHHHHHHHHHHhccCcccccccCcCCccCchHHHHHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCC
Confidence 999999988654311 10 00 01477888 99999999999999 99999999999
Q ss_pred cccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEcchhhhhhhhcc
Q 003769 217 LAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWAN 296 (796)
Q Consensus 217 GvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~ 296 (796)
|||||++|++||+++..+++|..|++.+|+.+|++ ++|+|+|+.+++.++++++. .+++||||| +
T Consensus 211 G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~--~~~~iLfiD------~---- 275 (468)
T 3pxg_A 211 GVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQ--AGNIILFID------A---- 275 (468)
T ss_dssp TTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHT--CCCCEEEEC------C----
T ss_pred CCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHHh--cCCeEEEEe------C----
Confidence 99999999999999999999999999999999987 78999999999999999997 568999999 2
Q ss_pred cCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccccccceecccCCCCcc
Q 003769 297 YYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTIPVGSLS 371 (796)
Q Consensus 297 ~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp~~~l~ 371 (796)
.+++.|+ |++.+ ++|.++|||+||..+|+++++.+|+|.+||. .|.++.|+..
T Consensus 276 ---------------~~~a~~~-L~~~L----~~g~v~vI~at~~~e~~~~~~~~~al~~Rf~--~i~v~~p~~e 328 (468)
T 3pxg_A 276 ---------------AIDASNI-LKPSL----ARGELQCIGATTLDEYRKYIEKDAALERRFQ--PIQVDQPSVD 328 (468)
T ss_dssp ------------------------CCCT----TSSSCEEEEECCTTTTHHHHTTCSHHHHSEE--EEECCCCCHH
T ss_pred ---------------chhHHHH-HHHhh----cCCCEEEEecCCHHHHHHHhhcCHHHHHhCc--cceeCCCCHH
Confidence 2345666 77666 4899999999999999999999999999985 4666555443
No 5
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=99.87 E-value=7.8e-22 Score=190.35 Aligned_cols=140 Identities=13% Similarity=0.134 Sum_probs=127.7
Q ss_pred cchhhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHhhcCCCChhhHHHHHHHHHHHhccCCCCC
Q 003769 7 AVPQALTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKALELCFNVALNRLPAST 86 (796)
Q Consensus 7 ~~~erfT~~A~~vL~~A~~~Ar~~gh~~VtpeHLLlaLL~~~~g~l~~iL~~~~gi~~~~d~~aL~~~l~~~L~rlp~~~ 86 (796)
+|+++||++++++|..|+++|+++||.+|+|||||+|||.+++|.+.++|.+ +|+ ++ +.++..++..+++.|...
T Consensus 2 ~m~~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~-~gv-~~---~~l~~~l~~~l~~~~~~~ 76 (146)
T 3fh2_A 2 AMFERFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALES-MGI-SL---DAVRQEVEEIIGQGSQPT 76 (146)
T ss_dssp GGGGGBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHH-TTC-CH---HHHHHHHHHHHCCCSCCC
T ss_pred chhhhcCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHHH-cCC-CH---HHHHHHHHHHhccCCCCC
Confidence 5789999999999999999999999999999999999999989999999999 999 76 999999999999887532
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHhccchhhhhhhcccccccccCHHHHHHHHhcCC--hHHHHHHHcCCC
Q 003769 87 ITSPLLGPHRHSPRPSLSNALVAAFKRAQAHQRRGSIENQQQQQQQPVLALKIEVEQLVISILDDP--SVSRVMREAGFS 164 (796)
Q Consensus 87 ~~~~~~~~~~~~~~~~~S~~l~~aL~~A~~~a~~~~lg~~~~~~~~~~l~~kI~~eHLLLALL~d~--~~a~vL~~~Gis 164 (796)
+ . .|++|+.++++|+.|+.+|++ +|++| |+++|||+||++++ .+.++|+++|++
T Consensus 77 ~-------~----~~~~s~~~~~vL~~A~~~a~~--~~~~~-----------i~~eHlLlall~~~~~~a~~iL~~~gv~ 132 (146)
T 3fh2_A 77 T-------G----HIPFTPRAKKVLELSLREGLQ--MGHKY-----------IGTEFLLLGLIREGEGVAAQVLVKLGAD 132 (146)
T ss_dssp C-------S----CCCBCHHHHHHHHHHHHHHHH--TTCSS-----------BCHHHHHHHHHHHCSSHHHHHHHHHTCC
T ss_pred c-------C----CCcCCHHHHHHHHHHHHHHHH--cCCCc-----------CcHHHHHHHHHhCCCcHHHHHHHHcCCC
Confidence 1 1 589999999999999999987 89999 99999999999753 589999999999
Q ss_pred hHHHHHHHHhh
Q 003769 165 SSQVKIKVEEN 175 (796)
Q Consensus 165 ~~~l~~~v~~~ 175 (796)
.+.+++.+.+.
T Consensus 133 ~~~l~~~l~~~ 143 (146)
T 3fh2_A 133 LPRVRQQVIQL 143 (146)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 6
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=99.87 E-value=9.2e-22 Score=189.76 Aligned_cols=139 Identities=15% Similarity=0.141 Sum_probs=126.8
Q ss_pred cchhhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHhhcCCCChhhHHHHHHHHHHHhccCCCCC
Q 003769 7 AVPQALTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKALELCFNVALNRLPAST 86 (796)
Q Consensus 7 ~~~erfT~~A~~vL~~A~~~Ar~~gh~~VtpeHLLlaLL~~~~g~l~~iL~~~~gi~~~~d~~aL~~~l~~~L~rlp~~~ 86 (796)
.++++||++++++|..|+++|+++||++|+|||||+|||.+++|.+.++|.+ +|+ ++ +.++..++..+++.|. .
T Consensus 3 ~~~~~~T~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~-~gv-d~---~~l~~~l~~~l~~~~~-~ 76 (145)
T 3fes_A 3 ANFNRFTQRAKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLSK-VGF-TE---AYLEGKIVDMEGKGEE-I 76 (145)
T ss_dssp -CCCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHH-HTC-CH---HHHHHHHHHHHCCCSC-C
T ss_pred CcccccCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHHH-cCC-CH---HHHHHHHHHHHhcCCC-C
Confidence 3678999999999999999999999999999999999999999999999999 999 76 9999999999998876 2
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHhccchhhhhhhcccccccccCHHHHHHHHhcCC--hHHHHHHHcCCC
Q 003769 87 ITSPLLGPHRHSPRPSLSNALVAAFKRAQAHQRRGSIENQQQQQQQPVLALKIEVEQLVISILDDP--SVSRVMREAGFS 164 (796)
Q Consensus 87 ~~~~~~~~~~~~~~~~~S~~l~~aL~~A~~~a~~~~lg~~~~~~~~~~l~~kI~~eHLLLALL~d~--~~a~vL~~~Gis 164 (796)
+ . .|+||+.++++|+.|+.+|++ +|++| |+++|||+||++++ .+.++|+++|++
T Consensus 77 ~-------~----~~~~s~~~~~vl~~A~~~A~~--~~~~~-----------v~~eHlLlAll~~~~~~a~~iL~~~gv~ 132 (145)
T 3fes_A 77 S-------E----DIVLSPRSKQILELSGMFANK--LKTNY-----------IGTEHILLAIIQEGEGIANKILNYAGVN 132 (145)
T ss_dssp C-------S----CCEECHHHHHHHHHHHHHHHH--TTCSS-----------BCHHHHHHHHHHHCCHHHHHHHHHHTCH
T ss_pred C-------C----CCCCCHHHHHHHHHHHHHHHH--cCCCc-----------ccHHHHHHHHHhCCCcHHHHHHHHcCCC
Confidence 1 1 589999999999999999997 89999 99999999999864 378999999999
Q ss_pred hHHHHHHHHhh
Q 003769 165 SSQVKIKVEEN 175 (796)
Q Consensus 165 ~~~l~~~v~~~ 175 (796)
.+.+++.+.+.
T Consensus 133 ~~~l~~~i~~~ 143 (145)
T 3fes_A 133 DRTLAQLTIDM 143 (145)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 7
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=99.86 E-value=2.6e-21 Score=186.19 Aligned_cols=140 Identities=22% Similarity=0.272 Sum_probs=122.5
Q ss_pred cchhhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHhhcCCCChhhHHHHHHHHHHHhccCCCCC
Q 003769 7 AVPQALTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKALELCFNVALNRLPAST 86 (796)
Q Consensus 7 ~~~erfT~~A~~vL~~A~~~Ar~~gh~~VtpeHLLlaLL~~~~g~l~~iL~~~~gi~~~~d~~aL~~~l~~~L~rlp~~~ 86 (796)
|++++||++++++|..|+++|+++||.+|+|+|||+|||.+++|.+.++|.+ +|+ ++ +.++..++..++++|...
T Consensus 1 M~~~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~~~iL~~-~g~-~~---~~l~~~l~~~l~~~p~~~ 75 (148)
T 1khy_A 1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTS-AGI-NA---GQLRTDINQALNRLPQVE 75 (148)
T ss_dssp ---CCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCTTCSHHHHHHH-HTC-CH---HHHHHHHHHHHTTSCCC-
T ss_pred CChhhhhHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCCCchHHHHHHH-cCC-CH---HHHHHHHHHHHHhCCCCC
Confidence 5789999999999999999999999999999999999999999999999999 999 76 999999999999988654
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHhccchhhhhhhcccccccccCHHHHHHHHhcC-ChHHHHHHHcCCCh
Q 003769 87 ITSPLLGPHRHSPRPSLSNALVAAFKRAQAHQRRGSIENQQQQQQQPVLALKIEVEQLVISILDD-PSVSRVMREAGFSS 165 (796)
Q Consensus 87 ~~~~~~~~~~~~~~~~~S~~l~~aL~~A~~~a~~~~lg~~~~~~~~~~l~~kI~~eHLLLALL~d-~~~a~vL~~~Gis~ 165 (796)
+. +. .|+||+.++++|+.|+.+|+. +|++| |+++|||+||+++ +.+.++|+.+|++.
T Consensus 76 ~~-----~~----~~~~s~~~~~vl~~A~~~a~~--~~~~~-----------i~~ehlLlall~~~~~~~~~L~~~gi~~ 133 (148)
T 1khy_A 76 GT-----GG----DVQPSQDLVRVLNLCDKLAQK--RGDNF-----------ISSELFVLAALESRGTLADILKAAGATT 133 (148)
T ss_dssp ---------------CBCHHHHHHHHHHHHHHHH--HTCSS-----------BCHHHHHHHHHTSCHHHHHHHHHTTCCH
T ss_pred CC-----CC----CcCcCHHHHHHHHHHHHHHHH--cCCCe-----------ecHHHHHHHHHcCCcHHHHHHHHcCCCH
Confidence 31 01 588999999999999999997 88998 9999999999964 45789999999999
Q ss_pred HHHHHHHH
Q 003769 166 SQVKIKVE 173 (796)
Q Consensus 166 ~~l~~~v~ 173 (796)
+.+++.+.
T Consensus 134 ~~l~~~l~ 141 (148)
T 1khy_A 134 ANITQAIE 141 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998886
No 8
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=99.86 E-value=3.2e-21 Score=186.11 Aligned_cols=139 Identities=13% Similarity=0.189 Sum_probs=122.2
Q ss_pred cchhhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHhhcCCCChhhHHHHHHHHHHHhccCCCCC
Q 003769 7 AVPQALTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKALELCFNVALNRLPAST 86 (796)
Q Consensus 7 ~~~erfT~~A~~vL~~A~~~Ar~~gh~~VtpeHLLlaLL~~~~g~l~~iL~~~~gi~~~~d~~aL~~~l~~~L~rlp~~~ 86 (796)
||+++||++++++|..|+++|+++||.+|+|+|||+|||.+++|.+..+|.+ +|+ ++ +.++..++..++++|...
T Consensus 1 M~~~~~t~~~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~-~g~-~~---~~l~~~l~~~l~~~~~~~ 75 (150)
T 2y1q_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQA-LGL-GS---EKIQKEVESLIGRAQEMS 75 (150)
T ss_dssp ---CCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHH-TTC-CH---HHHHHHHHHHHCCC----
T ss_pred CcchhhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHHH-cCC-CH---HHHHHHHHHHhccCCccc
Confidence 5789999999999999999999999999999999999999999999999999 999 76 999999999999887532
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHhccchhhhhhhcccccccccCHHHHHHHHhcCC--hHHHHHHHcCCC
Q 003769 87 ITSPLLGPHRHSPRPSLSNALVAAFKRAQAHQRRGSIENQQQQQQQPVLALKIEVEQLVISILDDP--SVSRVMREAGFS 164 (796)
Q Consensus 87 ~~~~~~~~~~~~~~~~~S~~l~~aL~~A~~~a~~~~lg~~~~~~~~~~l~~kI~~eHLLLALL~d~--~~a~vL~~~Gis 164 (796)
+ .++||+.++++|+.|+.+|++ +|++| |+++|||+||++++ .+.++|+++|++
T Consensus 76 ~------------~~~~s~~~~~vL~~A~~~A~~--~~~~~-----------i~~ehlLlall~~~~~~a~~~L~~~gi~ 130 (150)
T 2y1q_A 76 Q------------TIHYTPRAKKVIELSMDEARK--LGHSY-----------VGTEHILLGLIREGEGVAARVLNNLGVS 130 (150)
T ss_dssp -------------CCEECHHHHHHHHHHHHHHHH--TTCSS-----------BCHHHHHHHHHHHCCSHHHHHHHHTTCC
T ss_pred c------------cCCCCHHHHHHHHHHHHHHHH--cCCCe-----------ecHHHHHHHHHhCCCcHHHHHHHHcCCC
Confidence 1 578999999999999999998 89999 99999999999753 357999999999
Q ss_pred hHHHHHHHHhh
Q 003769 165 SSQVKIKVEEN 175 (796)
Q Consensus 165 ~~~l~~~v~~~ 175 (796)
.+.+++.+.+.
T Consensus 131 ~~~l~~~i~~~ 141 (150)
T 2y1q_A 131 LNKARQQVLQL 141 (150)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988744
No 9
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.84 E-value=1.9e-20 Score=199.58 Aligned_cols=160 Identities=19% Similarity=0.310 Sum_probs=141.1
Q ss_pred cHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHhhc-----cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCce
Q 003769 564 TDENLKVLSDALERKAVVPWQKEIMPEIARTILECRS-----KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNF 638 (796)
Q Consensus 564 ~~e~L~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~rs-----~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~ 638 (796)
+.+++..|++.|.++ ++||+.++..|..+|.+.+. .+|.+++||.||+| +|||.+|++||+.++.+. ..+
T Consensus 4 ~~~~l~~l~~~l~~~--i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~G--tGKt~la~~la~~~~~~~-~~~ 78 (311)
T 4fcw_A 4 EREKLLRLEEELHKR--VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTG--VGKTELAKTLAATLFDTE-EAM 78 (311)
T ss_dssp HHHHHHTHHHHHHTT--CCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSS--SSHHHHHHHHHHHHHSCG-GGE
T ss_pred HHHHHHHHHHHHhhh--cCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCC--cCHHHHHHHHHHHHcCCC-cce
Confidence 457899999999999 99999999999999998875 57789999999999 999999999999999887 889
Q ss_pred EEecCCCCccccccccccCCC-CCCCCCCchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCc
Q 003769 639 TNLSSSQSRQDDCRTKKRSRD-VELGCCSYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGE 717 (796)
Q Consensus 639 i~~dms~~~~~~~~~~k~~~~-~~~~~~~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~ 717 (796)
+.+||+.+ .+.+...+..|. +++.|....+.++++++..|+.|++|||||++ ++ .+++.|++++++|++++..|+
T Consensus 79 ~~~~~~~~-~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l--~~-~~~~~Ll~~le~~~~~~~~~~ 154 (311)
T 4fcw_A 79 IRIDMTEY-MEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA--HP-DVFNILLQMLDDGRLTDSHGR 154 (311)
T ss_dssp EEEEGGGC-CSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS--CH-HHHHHHHHHHHHSEEECTTSC
T ss_pred EEeecccc-cccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhc--CH-HHHHHHHHHHhcCEEEcCCCC
Confidence 99999876 344434455553 45555444478999999999999999999999 99 999999999999999999999
Q ss_pred eecCCcEEEEeeCCC
Q 003769 718 IVPLKDSIIIFSCDS 732 (796)
Q Consensus 718 ~v~~~n~IiilTsn~ 732 (796)
.++|+|+|||+|||.
T Consensus 155 ~~~~~~~iiI~ttn~ 169 (311)
T 4fcw_A 155 TVDFRNTVIIMTSNL 169 (311)
T ss_dssp EEECTTEEEEEEEST
T ss_pred EEECCCcEEEEeccc
Confidence 999999999999984
No 10
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=99.81 E-value=1.2e-19 Score=180.21 Aligned_cols=139 Identities=16% Similarity=0.192 Sum_probs=120.3
Q ss_pred cccchhhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHhhcCCCChhhHHHHHHHHHHHhccCCC
Q 003769 5 LCAVPQALTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKALELCFNVALNRLPA 84 (796)
Q Consensus 5 ~~~~~erfT~~A~~vL~~A~~~Ar~~gh~~VtpeHLLlaLL~~~~g~l~~iL~~~~gi~~~~d~~aL~~~l~~~L~rlp~ 84 (796)
+.+++++||++++++|..|+++|+++||++|+|||||+|||.+++|.+.++|.+ +|+ ++ +.++..++ .++++|.
T Consensus 18 l~~~~~kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~~-~gv-d~---~~l~~~l~-~l~~~p~ 91 (171)
T 3zri_A 18 LPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLKQ-AGL-EV---DQVKQAIA-STYSREQ 91 (171)
T ss_dssp HHHHHHHBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHHH-TTC-CH---HHHHHHHH-HHSCCCC
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHHH-cCC-CH---HHHHHHHH-HHhcCCC
Confidence 457899999999999999999999999999999999999999999999999999 999 76 99999999 9998885
Q ss_pred CCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHH-hccchhhhhhhcccccccccCHHHHHHHHhcCCh---HHHHHHH
Q 003769 85 STITSPLLGPHRHSPRPSLSNALVAAFKRAQAHQR-RGSIENQQQQQQQPVLALKIEVEQLVISILDDPS---VSRVMRE 160 (796)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~S~~l~~aL~~A~~~a~-~~~lg~~~~~~~~~~l~~kI~~eHLLLALL~d~~---~a~vL~~ 160 (796)
..+ . .|+||+.++++|+.|+.+|+ + +|++| |+++|||+||++++. ...+-..
T Consensus 92 ~~~-------~----~~~~S~~l~~vL~~A~~~A~l~--~gd~~-----------I~teHLLLALl~~~~~~~~~~~~~~ 147 (171)
T 3zri_A 92 VLD-------T----YPAFSPLLVELLQEAWLLSSTE--LEQAE-----------LRSGAIFLAALTRADRYLSFKLISL 147 (171)
T ss_dssp CCS-------S----CCEECHHHHHHHHHHHHHHHTT--TCCSS-----------BCHHHHHHHHHHTHHHHSCHHHHHH
T ss_pred CCC-------C----CCCcCHHHHHHHHHHHHHHHHH--cCCCE-----------EcHHHHHHHHHhChhhhHHHHhhHH
Confidence 322 1 58999999999999999998 8 89999 999999999999862 1222233
Q ss_pred c-CCChHHHHHHHH
Q 003769 161 A-GFSSSQVKIKVE 173 (796)
Q Consensus 161 ~-Gis~~~l~~~v~ 173 (796)
+ .|+.+.+++.+.
T Consensus 148 l~~i~~~~L~~~~~ 161 (171)
T 3zri_A 148 FEGINRENLKKHFA 161 (171)
T ss_dssp TTTSCHHHHHHTHH
T ss_pred HHcCCHHHHHHHHH
Confidence 3 678888877654
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.80 E-value=7.3e-19 Score=210.54 Aligned_cols=151 Identities=14% Similarity=0.180 Sum_probs=113.8
Q ss_pred ChHHHHHHHHH-Hhh----------ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHH
Q 003769 192 DSDDVMSVLNA-LIN----------KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGE 260 (796)
Q Consensus 192 r~~ei~~vi~~-L~r----------~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge 260 (796)
--++|+.++.. |.. .+++++|+||||||||++|+++|..+ +..|+.++...++++|.|+
T Consensus 212 ~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el----------g~~~~~v~~~~l~sk~~ge 281 (806)
T 3cf2_A 212 QLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLINGPEIMSKLAGE 281 (806)
T ss_dssp THHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT----------TCEEEEEEHHHHHSSCTTH
T ss_pred HHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCeEEEEEhHHhhcccchH
Confidence 45566766665 321 35789999999999999999999754 5789999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecC
Q 003769 261 VEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIAS 340 (796)
Q Consensus 261 ~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT 340 (796)
.|.+++++++.++. ..|+||||||++.|++.+.. +.+ ......+.+|..++.++..++.+.+||||+
T Consensus 282 se~~lr~lF~~A~~--~~PsIIfIDEiDal~~~r~~----~~~-------~~~~riv~~LL~~mdg~~~~~~V~VIaaTN 348 (806)
T 3cf2_A 282 SESNLRKAFEEAEK--NAPAIIFIDELDAIAPKREK----THG-------EVERRIVSQLLTLMDGLKQRAHVIVMAATN 348 (806)
T ss_dssp HHHHHHHHHHHHTT--SCSEEEEEESGGGTCCTTTT----CCC-------TTHHHHHHHHHTHHHHCCGGGCEEEEEECS
T ss_pred HHHHHHHHHHHHHH--cCCeEEEEehhcccccccCC----CCC-------hHHHHHHHHHHHHHhcccccCCEEEEEecC
Confidence 99999999999987 57999999999999987531 111 022333333555555444577899999998
Q ss_pred hHHHHHhhhcCccccc--cccceecccCCCCcc
Q 003769 341 FQTYTRCKAGHPSLEN--MWKLHPFTIPVGSLS 371 (796)
Q Consensus 341 ~~ey~k~~~~dpaLer--rf~lq~V~vp~~~l~ 371 (796)
.-+ ..||||-| ||+ ..|.+|.|+..
T Consensus 349 ~~d-----~LD~ALrR~GRFd-~~I~i~~Pd~~ 375 (806)
T 3cf2_A 349 RPN-----SIDPALRRFGRFD-REVDIGIPDAT 375 (806)
T ss_dssp STT-----TSCTTTTSTTSSC-EEEECCCCCHH
T ss_pred Chh-----hcCHHHhCCcccc-eEEecCCCCHH
Confidence 542 57999999 886 45666665543
No 12
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=99.79 E-value=6.6e-19 Score=168.51 Aligned_cols=135 Identities=16% Similarity=0.191 Sum_probs=119.3
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHhhcCCCChhhHHHHHHHHHHHhccC-CCCC-CCC
Q 003769 12 LTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKALELCFNVALNRL-PAST-ITS 89 (796)
Q Consensus 12 fT~~A~~vL~~A~~~Ar~~gh~~VtpeHLLlaLL~~~~g~l~~iL~~~~gi~~~~d~~aL~~~l~~~L~rl-p~~~-~~~ 89 (796)
||++++++|..|+++|+++||.+|+|+|||+|||.++ .+.++|++ +|+ ++ +.++..++..+++. |... ++.
T Consensus 2 ~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~--~~~~iL~~-~g~-~~---~~l~~~l~~~l~~~~p~~~~~~~ 74 (143)
T 1k6k_A 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNP--SAREALEA-CSV-DL---VALRQELEAFIEQTTPVLPASEE 74 (143)
T ss_dssp BCHHHHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCH--HHHHHHHH-TTC-CH---HHHHHHHHHHHHHHSCBCCSSCS
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCc--hHHHHHHH-cCC-CH---HHHHHHHHHHHHhcCCCCCCCCC
Confidence 8999999999999999999999999999999999876 38999999 999 76 99999999999886 7543 110
Q ss_pred CCCCCCCCCCCCcccHHHHHHHHHHHHHHHhccchhhhhhhcccccccccCHHHHHHHHhcCC--hHHHHHHHcCCChHH
Q 003769 90 PLLGPHRHSPRPSLSNALVAAFKRAQAHQRRGSIENQQQQQQQPVLALKIEVEQLVISILDDP--SVSRVMREAGFSSSQ 167 (796)
Q Consensus 90 ~~~~~~~~~~~~~~S~~l~~aL~~A~~~a~~~~lg~~~~~~~~~~l~~kI~~eHLLLALL~d~--~~a~vL~~~Gis~~~ 167 (796)
.. .++||+.++++|+.|+.++++ +|++| |+++|||+||++++ .+.++|+++|++.+.
T Consensus 75 ----~~----~~~~s~~~~~~l~~A~~~A~~--~~~~~-----------i~~ehLLlall~~~~~~~~~iL~~~gi~~~~ 133 (143)
T 1k6k_A 75 ----ER----DTQPTLSFQRVLQRAVFHVQS--SGRNE-----------VTGANVLVAIFSEQESQAAYLLRKHEVSRLD 133 (143)
T ss_dssp ----CC----SCEECHHHHHHHHHHHHHHHS--SSCSC-----------BCHHHHHHHHTTCTTSHHHHHHHHTTCCHHH
T ss_pred ----CC----CCCCCHHHHHHHHHHHHHHHH--cCCCc-----------cCHHHHHHHHHhCcCcHHHHHHHHcCCCHHH
Confidence 01 589999999999999999997 89999 99999999999864 378999999999999
Q ss_pred HHHHHHh
Q 003769 168 VKIKVEE 174 (796)
Q Consensus 168 l~~~v~~ 174 (796)
+++.+.+
T Consensus 134 l~~~i~~ 140 (143)
T 1k6k_A 134 VVNFISH 140 (143)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 9988764
No 13
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.71 E-value=6.8e-17 Score=157.39 Aligned_cols=155 Identities=17% Similarity=0.335 Sum_probs=128.9
Q ss_pred ChHHHHHHHHHHhh-ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc--cchHHHHHHHHHH
Q 003769 192 DSDDVMSVLNALIN-KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN--QSKGEVEQKLVEL 268 (796)
Q Consensus 192 r~~ei~~vi~~L~r-~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a--~~rge~E~rl~~l 268 (796)
|++++.++++.|.+ ..++++|+||||+|||++++.++..+.....|..+.+..++.+++..+.. .+.+.++..++++
T Consensus 27 ~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (187)
T 2p65_A 27 RDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSI 106 (187)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHH
Confidence 99999999999988 88899999999999999999999999988888888899999999887764 6889999999999
Q ss_pred HHHHHhccCCCEEEEEcchhhhhhhhcccCCC-CccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHh
Q 003769 269 SCHVKSYMGRGIVLYLGDLKWVAEFWANYYGG-DEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRC 347 (796)
Q Consensus 269 ~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~-~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~ 347 (796)
+..+... +++.||||||+|++.+. +. .++ ..+..+. |+.++ .++.+.+|++|+..++.+.
T Consensus 107 ~~~~~~~-~~~~vl~iDe~~~l~~~-----~~~~~~--------~~~~~~~-l~~~~----~~~~~~ii~~~~~~~~~~~ 167 (187)
T 2p65_A 107 LKEVQDA-EGQVVMFIDEIHTVVGA-----GAVAEG--------ALDAGNI-LKPML----ARGELRCIGATTVSEYRQF 167 (187)
T ss_dssp HHHHHHT-TTSEEEEETTGGGGSSS-----SSSCTT--------SCCTHHH-HHHHH----HTTCSCEEEEECHHHHHHH
T ss_pred HHHHHhc-CCceEEEEeCHHHhccc-----cccccc--------chHHHHH-HHHHH----hcCCeeEEEecCHHHHHHH
Confidence 9998875 57899999999999865 21 111 1233444 66666 2788999999999999988
Q ss_pred hhcCccccccccceecccCC
Q 003769 348 KAGHPSLENMWKLHPFTIPV 367 (796)
Q Consensus 348 ~~~dpaLerrf~lq~V~vp~ 367 (796)
+..+|+|.+||.. +.+|.
T Consensus 168 ~~~~~~l~~R~~~--i~i~~ 185 (187)
T 2p65_A 168 IEKDKALERRFQQ--ILVEQ 185 (187)
T ss_dssp TTTCHHHHHHEEE--EECCS
T ss_pred HhccHHHHHhcCc--ccCCC
Confidence 8899999999864 55544
No 14
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.69 E-value=4.8e-17 Score=196.59 Aligned_cols=136 Identities=15% Similarity=0.173 Sum_probs=99.7
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
.+++++|+||||||||++++.|+..+ +..++.++...+...+.|+++.+++.+++.+.. ..+.|||||
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l----------~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~--~~p~il~iD 304 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANET----------GAFFFLINGPEIMSKLAGESESNLRKAFEEAEK--NAPAIIFID 304 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTT----------TCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHH--HCSEEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHc----------CCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHh--cCCcEEEec
Confidence 45689999999999999999999854 467899999888889999999999999999987 468999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccc--cccceec
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLEN--MWKLHPF 363 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLer--rf~lq~V 363 (796)
|++.+.+.+. ...+ .........|..++.+...+..+.+|++|+..+ ..||+|.+ ||. ..+
T Consensus 305 Eid~l~~~~~----~~~~-------~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~-----~ld~al~r~gRf~-~~i 367 (806)
T 1ypw_A 305 ELDAIAPKRE----KTHG-------EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN-----SIDPALRRFGRFD-REV 367 (806)
T ss_dssp SGGGTSCTTS----CCCS-------HHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTT-----TSCTTTTSTTSSC-EEE
T ss_pred cHHHhhhccc----cccc-------hHHHHHHHHHHHHhhhhcccccEEEecccCCch-----hcCHHHhcccccc-ccc
Confidence 9999998742 1111 122233232445554333467899999998653 46899988 774 334
Q ss_pred ccCCCCc
Q 003769 364 TIPVGSL 370 (796)
Q Consensus 364 ~vp~~~l 370 (796)
.++.|..
T Consensus 368 ~i~~p~~ 374 (806)
T 1ypw_A 368 DIGIPDA 374 (806)
T ss_dssp CCCCCCH
T ss_pred ccCCCCH
Confidence 4444433
No 15
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.69 E-value=1.2e-16 Score=155.62 Aligned_cols=158 Identities=15% Similarity=0.304 Sum_probs=128.3
Q ss_pred ChHHHHHHHHHHhh-ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc--cchHHHHHHHHHH
Q 003769 192 DSDDVMSVLNALIN-KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN--QSKGEVEQKLVEL 268 (796)
Q Consensus 192 r~~ei~~vi~~L~r-~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a--~~rge~E~rl~~l 268 (796)
|+++++++++.|.+ ..++++|+||||+|||++++.++..+.....|..+.+..++.++...+.. .+.++++..++++
T Consensus 27 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (195)
T 1jbk_A 27 RDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGV 106 (195)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHH
Confidence 99999999999988 88899999999999999999999999988888877889999999888764 6899999999999
Q ss_pred HHHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhh
Q 003769 269 SCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCK 348 (796)
Q Consensus 269 ~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~ 348 (796)
++.+... +++.||||||++++.+.. +..+ ..+..+. |+.++ +++.+.+|++|+..++...+
T Consensus 107 ~~~~~~~-~~~~vl~iDe~~~l~~~~-----~~~~--------~~~~~~~-l~~~~----~~~~~~~i~~~~~~~~~~~~ 167 (195)
T 1jbk_A 107 LNDLAKQ-EGNVILFIDELHTMVGAG-----KADG--------AMDAGNM-LKPAL----ARGELHCVGATTLDEYRQYI 167 (195)
T ss_dssp HHHHHHS-TTTEEEEEETGGGGTT-------------------CCCCHHH-HHHHH----HTTSCCEEEEECHHHHHHHT
T ss_pred HHHHhhc-CCCeEEEEeCHHHHhccC-----cccc--------hHHHHHH-HHHhh----ccCCeEEEEeCCHHHHHHHH
Confidence 9988764 668999999999998762 1111 1122333 66666 37889999999999999988
Q ss_pred hcCccccccccceecccCCCCc
Q 003769 349 AGHPSLENMWKLHPFTIPVGSL 370 (796)
Q Consensus 349 ~~dpaLerrf~lq~V~vp~~~l 370 (796)
..+++|.+||. .+.++.++.
T Consensus 168 ~~~~~l~~r~~--~i~~~~p~~ 187 (195)
T 1jbk_A 168 EKDAALERRFQ--KVFVAEPSV 187 (195)
T ss_dssp TTCHHHHTTEE--EEECCCCCH
T ss_pred hcCHHHHHHhc--eeecCCCCH
Confidence 89999999975 466655443
No 16
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.58 E-value=9.6e-15 Score=162.42 Aligned_cols=137 Identities=12% Similarity=0.154 Sum_probs=105.9
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
.+++++|+||||||||.+|+++|... +..|+.++.+.+..+|.||.|.+++++|+.++. ..|+|||||
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~----------~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~--~aP~IIFiD 248 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT----------DCKFIRVSGAELVQKYIGEGSRMVRELFVMARE--HAPSIIFMD 248 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH----------TCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHH--TCSEEEEEE
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh----------CCCceEEEhHHhhccccchHHHHHHHHHHHHHH--hCCceEeee
Confidence 56899999999999999999999986 578999999999999999999999999999998 579999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhc---CCCCcEEEEEecChHHHHHhhhcCccccc--cccc
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEI---GESERVWIMGIASFQTYTRCKAGHPSLEN--MWKL 360 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~---~~~G~l~~IGatT~~ey~k~~~~dpaLer--rf~l 360 (796)
|++.+++.|.. +++++ ...+... +..|+..| ..++.+.+||||+.- -..||||-| ||+
T Consensus 249 EiDai~~~R~~--~~~~~------~~~~~~~---l~~lL~~lDg~~~~~~V~vIaATNrp-----d~LDpAllRpGRfD- 311 (405)
T 4b4t_J 249 EIDSIGSTRVE--GSGGG------DSEVQRT---MLELLNQLDGFETSKNIKIIMATNRL-----DILDPALLRPGRID- 311 (405)
T ss_dssp SSSCCTTSCSC--SSSGG------GGHHHHH---HHHHHHHHHTTTCCCCEEEEEEESCS-----SSSCHHHHSTTSSC-
T ss_pred cchhhccCCCC--CCCCC------cHHHHHH---HHHHHHhhhccCCCCCeEEEeccCCh-----hhCCHhHcCCCcCc-
Confidence 99999987632 11111 0012222 44555444 246679999999853 258999999 887
Q ss_pred eecccCCCCcc
Q 003769 361 HPFTIPVGSLS 371 (796)
Q Consensus 361 q~V~vp~~~l~ 371 (796)
..|.+|-|+..
T Consensus 312 ~~I~i~lPd~~ 322 (405)
T 4b4t_J 312 RKIEFPPPSVA 322 (405)
T ss_dssp CEEECCCCCHH
T ss_pred eEEEcCCcCHH
Confidence 46666655533
No 17
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.6e-14 Score=159.63 Aligned_cols=137 Identities=8% Similarity=0.067 Sum_probs=105.8
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
-+++++|+||||||||.+|+++|... +..|+.++.+.+..+|.||.|..+++++..++. ..|+|||||
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~----------~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~--~aP~IIfiD 282 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQT----------SATFLRIVGSELIQKYLGDGPRLCRQIFKVAGE--NAPSIVFID 282 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHH----------TCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHH--TCSEEEEEE
T ss_pred CCCCCceECCCCchHHHHHHHHHHHh----------CCCEEEEEHHHhhhccCchHHHHHHHHHHHHHh--cCCcEEEEe
Confidence 46899999999999999999999986 578999999999999999999999999999998 579999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhc---CCCCcEEEEEecChHHHHHhhhcCccccc--cccc
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEI---GESERVWIMGIASFQTYTRCKAGHPSLEN--MWKL 360 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~---~~~G~l~~IGatT~~ey~k~~~~dpaLer--rf~l 360 (796)
|++.++..|.. ++..+ . ..+... +..|+..+ +.++.+.+||||+.-+ ..||||-| ||+.
T Consensus 283 EiDai~~~R~~--~~~~~-----~-~~~~~~---l~~LL~~lDg~~~~~~ViVIaATNrpd-----~LDpALlRpGRfD~ 346 (437)
T 4b4t_I 283 EIDAIGTKRYD--SNSGG-----E-REIQRT---MLELLNQLDGFDDRGDVKVIMATNKIE-----TLDPALIRPGRIDR 346 (437)
T ss_dssp EESSSSCCCSC--SSCSS-----C-CHHHHH---HHHHHHHHHHCCCSSSEEEEEEESCST-----TCCTTSSCTTTEEE
T ss_pred hhhhhcccCCC--CCCCc-----c-HHHHHH---HHHHHHHhhCcCCCCCEEEEEeCCChh-----hcCHHHhcCCceeE
Confidence 99999988632 11111 0 012222 44555433 3467799999998642 68999999 8874
Q ss_pred eecccCCCCcc
Q 003769 361 HPFTIPVGSLS 371 (796)
Q Consensus 361 q~V~vp~~~l~ 371 (796)
.|.+|-|+..
T Consensus 347 -~I~v~lPd~~ 356 (437)
T 4b4t_I 347 -KILFENPDLS 356 (437)
T ss_dssp -EECCCCCCHH
T ss_pred -EEEcCCcCHH
Confidence 4666655433
No 18
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.52 E-value=2.7e-14 Score=160.62 Aligned_cols=137 Identities=14% Similarity=0.162 Sum_probs=105.4
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
.+++++|+||||||||.+|+++|... +..|+.++.+.+..+|.|+.|..++.++..++. ..|+|||||
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~----------~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~--~aP~IifiD 281 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQT----------NATFLKLAAPQLVQMYIGEGAKLVRDAFALAKE--KAPTIIFID 281 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH----------TCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHH--HCSEEEEEE
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHh----------CCCEEEEehhhhhhcccchHHHHHHHHHHHHHh--cCCeEEeec
Confidence 47899999999999999999999986 578999999999999999999999999999998 479999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC---CCCcEEEEEecChHHHHHhhhcCccccc--cccc
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG---ESERVWIMGIASFQTYTRCKAGHPSLEN--MWKL 360 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~---~~G~l~~IGatT~~ey~k~~~~dpaLer--rf~l 360 (796)
|++.+++.|.. +++. +....+..+..|+..++ .++.+.+||||+.- -..||||-| ||+
T Consensus 282 EiDal~~~R~~----~~~~-------~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp-----~~LD~AllRpGRfD- 344 (434)
T 4b4t_M 282 ELDAIGTKRFD----SEKS-------GDREVQRTMLELLNQLDGFSSDDRVKVLAATNRV-----DVLDPALLRSGRLD- 344 (434)
T ss_dssp CTHHHHCCCSS----GGGG-------TTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSC-----CCCCTTTCSTTSEE-
T ss_pred chhhhhhccCC----CCCC-------CchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCc-----hhcCHhHhcCCcee-
Confidence 99999987632 1110 11122222445665543 35678999999853 258999988 886
Q ss_pred eecccCCCCcc
Q 003769 361 HPFTIPVGSLS 371 (796)
Q Consensus 361 q~V~vp~~~l~ 371 (796)
..|.+|-|+..
T Consensus 345 ~~I~i~lPd~~ 355 (434)
T 4b4t_M 345 RKIEFPLPSED 355 (434)
T ss_dssp EEEECCCCCHH
T ss_pred EEEEeCCcCHH
Confidence 45666655533
No 19
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.51 E-value=6.5e-14 Score=157.39 Aligned_cols=135 Identities=11% Similarity=0.140 Sum_probs=102.2
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
.+++++|+||||||||.+|+++|... +..|+.++.+.+..+|.|+.+.+++++|+.++. ..|+|||||
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~----------~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~--~aP~IifiD 272 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANST----------KAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARE--NAPSIIFID 272 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHH----------TCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHH--TCSEEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEecchhhccccchhHHHHHHHHHHHHH--cCCCeeech
Confidence 46789999999999999999999986 578999999999999999999999999999998 579999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccc--cccceec
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLEN--MWKLHPF 363 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLer--rf~lq~V 363 (796)
|++.++..|... ...+ . ........+|...+.++...+.+.+||||+.- -..||||-| ||+. .|
T Consensus 273 EiD~i~~~R~~~--~~~~-----~-~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~-----~~LD~AllRpGRfd~-~I 338 (428)
T 4b4t_K 273 EVDSIATKRFDA--QTGS-----D-REVQRILIELLTQMDGFDQSTNVKVIMATNRA-----DTLDPALLRPGRLDR-KI 338 (428)
T ss_dssp CTHHHHCSCSSS--CSCC-----C-CHHHHHHHHHHHHHHHSCSSCSEEEEEEESCS-----SSCCHHHHSSSSEEE-EE
T ss_pred hhhhhhccccCC--CCCC-----C-hHHHHHHHHHHHHhhCCCCCCCEEEEEecCCh-----hhcChhhhcCCcceE-EE
Confidence 999999886321 1111 0 02233322233333333345669999999853 257999999 7763 45
Q ss_pred ccC
Q 003769 364 TIP 366 (796)
Q Consensus 364 ~vp 366 (796)
.+|
T Consensus 339 ~~p 341 (428)
T 4b4t_K 339 EFP 341 (428)
T ss_dssp ECC
T ss_pred EcC
Confidence 565
No 20
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.50 E-value=8e-14 Score=157.04 Aligned_cols=137 Identities=12% Similarity=0.121 Sum_probs=106.6
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
.+++++|+||||||||.+|+++|... +..|+.++.+.|..+|.|+.|.+++++|..++. ..|+|||||
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~----------~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~--~aP~IIfiD 309 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRT----------DATFIRVIGSELVQKYVGEGARMVRELFEMART--KKACIIFFD 309 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHH----------TCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHH--TCSEEEEEE
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhcc----------CCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHh--cCCceEeec
Confidence 57899999999999999999999986 578999999999999999999999999999998 579999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhc---CCCCcEEEEEecChHHHHHhhhcCccccc--cccc
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEI---GESERVWIMGIASFQTYTRCKAGHPSLEN--MWKL 360 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~---~~~G~l~~IGatT~~ey~k~~~~dpaLer--rf~l 360 (796)
|++.++..|... ..+ .....+..+..|+..| ..++.+.+||||+.- -..||||-| ||+
T Consensus 310 EiDai~~~R~~~---~~~--------~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrp-----d~LDpALlRpGRFD- 372 (467)
T 4b4t_H 310 EIDAVGGARFDD---GAG--------GDNEVQRTMLELITQLDGFDPRGNIKVMFATNRP-----NTLDPALLRPGRID- 372 (467)
T ss_dssp CCTTTSBCCSSS---SCG--------GGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCT-----TSBCHHHHSTTTCC-
T ss_pred ccccccccccCc---CCC--------ccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCc-----ccCChhhhcccccc-
Confidence 999999876321 111 1112222244455444 246779999999853 268999999 997
Q ss_pred eecccCCCCcc
Q 003769 361 HPFTIPVGSLS 371 (796)
Q Consensus 361 q~V~vp~~~l~ 371 (796)
..|.+|-|+..
T Consensus 373 ~~I~i~lPd~~ 383 (467)
T 4b4t_H 373 RKVEFSLPDLE 383 (467)
T ss_dssp EEECCCCCCHH
T ss_pred EEEEeCCcCHH
Confidence 46777666544
No 21
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.50 E-value=6.4e-14 Score=157.73 Aligned_cols=137 Identities=12% Similarity=0.131 Sum_probs=104.2
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
.+++++|+||||||||.+|++||... +..|+.++.+.+..+|.|+.+..++.++..++. ..|+|||||
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~----------~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~--~~P~IifiD 281 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATI----------GANFIFSPASGIVDKYIGESARIIREMFAYAKE--HEPCIIFMD 281 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH----------TCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHH--SCSEEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEehhhhccccchHHHHHHHHHHHHHHh--cCCceeeee
Confidence 46899999999999999999999986 578999999999999999999999999999998 579999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhc---CCCCcEEEEEecChHHHHHhhhcCcccccc--ccc
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEI---GESERVWIMGIASFQTYTRCKAGHPSLENM--WKL 360 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~---~~~G~l~~IGatT~~ey~k~~~~dpaLerr--f~l 360 (796)
|++.+++.|... | ..+ ...+... +..||..| ...+.+.+||||+.-+ ..||||-|+ |+
T Consensus 282 EiDai~~~R~~~-~-~~~------~~~~~~~---l~~lL~~lDg~~~~~~vivI~ATNrp~-----~LDpAllRpGRfD- 344 (437)
T 4b4t_L 282 EVDAIGGRRFSE-G-TSA------DREIQRT---LMELLTQMDGFDNLGQTKIIMATNRPD-----TLDPALLRPGRLD- 344 (437)
T ss_dssp CCCSSSCCCSSS-C-CSS------TTHHHHH---HHHHHHHHHSSSCTTSSEEEEEESSTT-----SSCTTTTSTTSEE-
T ss_pred cccccccccccC-C-CCc------chHHHHH---HHHHHHHhhcccCCCCeEEEEecCCch-----hhCHHHhCCCccc-
Confidence 999999876321 1 111 0012222 34455444 2466789999998532 589999985 75
Q ss_pred eecccCCCCcc
Q 003769 361 HPFTIPVGSLS 371 (796)
Q Consensus 361 q~V~vp~~~l~ 371 (796)
..|.+|-|+..
T Consensus 345 ~~I~i~lPd~~ 355 (437)
T 4b4t_L 345 RKVEIPLPNEA 355 (437)
T ss_dssp EEECCCCCCHH
T ss_pred eeeecCCcCHH
Confidence 35666655533
No 22
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.46 E-value=1.8e-13 Score=150.70 Aligned_cols=144 Identities=17% Similarity=0.189 Sum_probs=95.8
Q ss_pred HHHHHHHHhhcCCCCCCcchHHHHHHHHH----HHhhc----------------------cCCCeEEEEecCCCCCchHH
Q 003769 567 NLKVLSDALERKAVVPWQKEIMPEIARTI----LECRS----------------------KKEQTWLLFLGADDHNHGKE 620 (796)
Q Consensus 567 ~L~~l~~~L~~~~~v~gQ~~av~~ia~~i----~~~rs----------------------~~~~~~~lf~Gp~g~~vGKt 620 (796)
+++.|++.|.+. |+||++|+..|..+| .+.+. .++...+||.||+| +|||
T Consensus 11 ~~~~l~~~L~~~--viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~G--tGKT 86 (376)
T 1um8_A 11 APKELKAVLDNY--VIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTG--SGKT 86 (376)
T ss_dssp CHHHHHHHHHTT--CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTT--SSHH
T ss_pred CHHHHHHHHhhH--ccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCC--CCHH
Confidence 466789999999 999999999999998 34331 34567899999999 9999
Q ss_pred HHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHH-------hCCCEEEEEcccccCCC
Q 003769 621 KIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALN-------ENPHRVFFMEDLDDHKV 693 (796)
Q Consensus 621 ~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr-------~~P~~Vvl~deieka~~ 693 (796)
.+|++||+.+ + ..|+.+|++... + .+|.|....+.+++.+. ..++.|||||||++.
T Consensus 87 ~la~~la~~l-~---~~~~~~~~~~~~-~----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l-- 149 (376)
T 1um8_A 87 LMAQTLAKHL-D---IPIAISDATSLT-E----------AGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKI-- 149 (376)
T ss_dssp HHHHHHHHHT-T---CCEEEEEGGGCC-------------------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--
T ss_pred HHHHHHHHHh-C---CCEEEecchhhh-h----------cCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHH--
Confidence 9999999988 4 459999987542 1 12334433344555543 447899999999999
Q ss_pred ChHH--------------HHHHHHHHHHcce--EecCCCceecCCcEEEEeeCCC
Q 003769 694 DSCY--------------CQKGLKQAIENGC--IALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 694 ~~~~--------------v~~~l~q~~d~G~--l~d~~G~~v~~~n~IiilTsn~ 732 (796)
.+ . +++.|+++||++. +++..|+..++.++++|+|+|.
T Consensus 150 ~~-~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~ 203 (376)
T 1um8_A 150 SR-LSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDI 203 (376)
T ss_dssp ---------------CHHHHHHHHHHHHCCEEC---------------CEECTTC
T ss_pred hh-hcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCe
Confidence 88 7 9999999999886 4677888888888888888875
No 23
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.45 E-value=1.5e-14 Score=158.60 Aligned_cols=142 Identities=15% Similarity=0.223 Sum_probs=99.9
Q ss_pred HHHHHHHhhcCCCCCCcchHHHHHHHHHHHhhc-----------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCC
Q 003769 568 LKVLSDALERKAVVPWQKEIMPEIARTILECRS-----------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSN 636 (796)
Q Consensus 568 L~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~rs-----------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~ 636 (796)
+..|.+.|.+. |+||++++..|..+|..... ..+...+||.||+| +|||.+|++||+.+ + .
T Consensus 6 ~~~l~~~l~~~--i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppG--tGKT~la~~ia~~~-~---~ 77 (363)
T 3hws_A 6 PHEIRNHLDDY--VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTG--SGKTLLAETLARLL-D---V 77 (363)
T ss_dssp HHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTT--SSHHHHHHHHHHHT-T---C
T ss_pred HHHHHHHHHhh--ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCC--CCHHHHHHHHHHHc-C---C
Confidence 45578899999 99999999999999954322 23567899999999 99999999999998 3 4
Q ss_pred ceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHh-------CCCEEEEEcccccCCCChHH------------
Q 003769 637 NFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNE-------NPHRVFFMEDLDDHKVDSCY------------ 697 (796)
Q Consensus 637 ~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~-------~P~~Vvl~deieka~~~~~~------------ 697 (796)
.|+.+++++.. + .+|.|....+.++++++. .+.+||||||||++ ++ .
T Consensus 78 ~~~~~~~~~l~-~----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l--~~-~~~~~~~~~~~~~ 143 (363)
T 3hws_A 78 PFTMADATTLT-E----------AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKI--SR-KSDNPSITRDVSG 143 (363)
T ss_dssp CEEEEEHHHHT-T----------CHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHH--CC-CSSCC---CHHHH
T ss_pred CEEEechHHhc-c----------cccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhh--cc-cccccccccccch
Confidence 59999987431 1 123333223455666544 46679999999999 87 6
Q ss_pred --HHHHHHHHHHcce---EecCCCceecCCcEEEEeeCCC
Q 003769 698 --CQKGLKQAIENGC---IALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 698 --v~~~l~q~~d~G~---l~d~~G~~v~~~n~IiilTsn~ 732 (796)
+++.|+++|| |+ +++..|+.+++.|+++|+|||.
T Consensus 144 ~~~~~~Ll~~le-g~~~~~~~~~~~~~~~~~~~~i~tsn~ 182 (363)
T 3hws_A 144 EGVQQALLKLIE-GTVAAVPPQGGRKHPQQEFLQVDTSKI 182 (363)
T ss_dssp HHHHHHHHHHHH-CC----------------CCCCCTTSS
T ss_pred HHHHHHHHHHhc-CceeeccCccccccCCCceEEEECCCc
Confidence 9999999999 76 4778899999999999999986
No 24
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.40 E-value=1.9e-13 Score=163.95 Aligned_cols=140 Identities=16% Similarity=0.196 Sum_probs=98.4
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
.+++++|+||||||||.+++++|... +..|+.++.+.++.+|.|+.|+.++++|+.+++ ..|+|||||
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~----------~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~--~~P~IifiD 577 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISIKGPELLTMWFGESEANVREIFDKARQ--AAPCVLFFD 577 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTT----------TCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHT--TCSEEEECS
T ss_pred CCceEEEecCCCCCchHHHHHHHHHh----------CCceEEeccchhhccccchHHHHHHHHHHHHHH--cCCceeech
Confidence 45789999999999999999999864 578999999999999999999999999999997 579999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccc--cccceec
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLEN--MWKLHPF 363 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLer--rf~lq~V 363 (796)
|++.+++.|....|+..+ ..+..+.+|...+.++..+..+.+||||+.- -..||||-| ||+. .|
T Consensus 578 EiDsl~~~R~~~~~~~~~--------~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p-----~~lD~AllRpgRfd~-~i 643 (806)
T 3cf2_A 578 ELDSIAKARGGNIGDGGG--------AADRVINQILTEMDGMSTKKNVFIIGATNRP-----DIIDPAILRPGRLDQ-LI 643 (806)
T ss_dssp CGGGCC----------------------CHHHHHHHHHHHSSCSSSSEEEECC-CCS-----SSSCHHHHSTTTSCC-EE
T ss_pred hhhHHhhccCCCCCCCch--------HHHHHHHHHHHHHhCCCCCCCEEEEEeCCCc-----hhCCHhHcCCCcceE-EE
Confidence 999999887321011111 3344433344444444345679999999854 257999999 9874 55
Q ss_pred ccCCCCcc
Q 003769 364 TIPVGSLS 371 (796)
Q Consensus 364 ~vp~~~l~ 371 (796)
.||-|...
T Consensus 644 ~v~lPd~~ 651 (806)
T 3cf2_A 644 YIPLPDEK 651 (806)
T ss_dssp EC-----C
T ss_pred EECCcCHH
Confidence 66555433
No 25
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.35 E-value=2.5e-12 Score=136.05 Aligned_cols=141 Identities=17% Similarity=0.252 Sum_probs=107.6
Q ss_pred HHHHHHHhhcCCCCCCcchHHHHHHHHHHHh--h--------ccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCc
Q 003769 568 LKVLSDALERKAVVPWQKEIMPEIARTILEC--R--------SKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNN 637 (796)
Q Consensus 568 L~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~--r--------s~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~ 637 (796)
...|.+.|.+. |+||++++..|..++... + ..++...+||.||+| +|||.+|+++|+.+ + ..
T Consensus 6 ~~~l~~~l~~~--i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~G--tGKT~la~~la~~l-~---~~ 77 (310)
T 1ofh_A 6 PREIVSELDQH--IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTG--VGKTEIARRLAKLA-N---AP 77 (310)
T ss_dssp HHHHHHHHHTT--CCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTT--SSHHHHHHHHHHHH-T---CC
T ss_pred HHHHHHHHhhh--cCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCC--CCHHHHHHHHHHHh-C---CC
Confidence 34578899999 999999999999998763 1 123456889999999 99999999999998 3 45
Q ss_pred eEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHH-------h-CCCEEEEEcccccCCCChHHH-----------
Q 003769 638 FTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALN-------E-NPHRVFFMEDLDDHKVDSCYC----------- 698 (796)
Q Consensus 638 ~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr-------~-~P~~Vvl~deieka~~~~~~v----------- 698 (796)
++.++++++. + .+|.|....+.+.+.+. . +++.||+|||||+. ++ ..
T Consensus 78 ~~~i~~~~~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l--~~-~~~~~~~~~~~~~ 143 (310)
T 1ofh_A 78 FIKVEATKFT-E----------VGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKI--CK-KGEYSGADVSREG 143 (310)
T ss_dssp EEEEEGGGGS-S----------CCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGG--SC-CSSCCSSHHHHHH
T ss_pred EEEEcchhcc-c----------CCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhc--Cc-cccccccchhHHH
Confidence 9999998652 1 12333322223333222 2 35789999999999 76 54
Q ss_pred -HHHHHHHHHcceEecCCCceecCCcEEEEeeCC
Q 003769 699 -QKGLKQAIENGCIALADGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 699 -~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn 731 (796)
++.|++.++++++....| .++..+.+||+|+|
T Consensus 144 ~~~~Ll~~le~~~~~~~~~-~~~~~~~~~i~~~~ 176 (310)
T 1ofh_A 144 VQRDLLPLVEGSTVSTKHG-MVKTDHILFIASGA 176 (310)
T ss_dssp HHHHHHHHHHCCEEEETTE-EEECTTCEEEEEEC
T ss_pred HHHHHHHHhcCCeEecccc-cccCCcEEEEEcCC
Confidence 899999999999888777 67889999999875
No 26
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.34 E-value=6.8e-12 Score=135.92 Aligned_cols=136 Identities=10% Similarity=0.197 Sum_probs=99.9
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEcc
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLGD 286 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfIDE 286 (796)
.++++|+||||||||++++.+|..+ .+..|+.++...+..+|.|+.+..++.+++.++. ..+.||||||
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~---------~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~--~~~~vl~iDE 113 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA---------NNSTFFSISSSDLVSKWLGESEKLVKNLFQLARE--NKPSIIFIDE 113 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT---------TSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHH--TSSEEEEEET
T ss_pred CceEEEECCCCccHHHHHHHHHHHc---------CCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHh--cCCcEEEeec
Confidence 4789999999999999999999875 3568999999999999999999999999999987 5789999999
Q ss_pred hhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC-CCCcEEEEEecChHHHHHhhhcCccccccccceeccc
Q 003769 287 LKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG-ESERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTI 365 (796)
Q Consensus 287 lh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~-~~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~v 365 (796)
++.+.+.+. .... ...+....+|-..+.++. ..+.+.+||+|+.. -..||+|-|||+ ..+.+
T Consensus 114 id~l~~~~~----~~~~-------~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~-----~~ld~al~rRf~-~~i~i 176 (322)
T 1xwi_A 114 IDSLCGSRS----ENES-------EAARRIKTEFLVQMQGVGVDNDGILVLGATNIP-----WVLDSAIRRRFE-KRIYI 176 (322)
T ss_dssp TTGGGCCSS----SCCT-------THHHHHHHHHHHHHHCSSSCCTTEEEEEEESCT-----TTSCHHHHHTCC-EEEEC
T ss_pred HHHhccccc----cccc-------hHHHHHHHHHHHHHhcccccCCCEEEEEecCCc-----ccCCHHHHhhcC-eEEEe
Confidence 999987642 1111 122332222332232222 25779999999865 257899999985 34555
Q ss_pred CCCCc
Q 003769 366 PVGSL 370 (796)
Q Consensus 366 p~~~l 370 (796)
|.|+.
T Consensus 177 ~~P~~ 181 (322)
T 1xwi_A 177 PLPEP 181 (322)
T ss_dssp CCCCH
T ss_pred CCcCH
Confidence 54443
No 27
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.34 E-value=5.6e-12 Score=136.18 Aligned_cols=136 Identities=12% Similarity=0.204 Sum_probs=100.2
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEcc
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLGD 286 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfIDE 286 (796)
.++++|+||||||||++++++|... +..|+.++.+.+..+|.|+.+..++.+++.++. ..+.||||||
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~----------~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~--~~~~vl~iDE 118 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA----------NSTFFSVSSSDLVSKWMGESEKLVKQLFAMARE--NKPSIIFIDQ 118 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH----------TCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHH--TSSEEEEEEC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH----------CCCEEEEchHHHhhcccchHHHHHHHHHHHHHh--cCCeEEEech
Confidence 5689999999999999999999975 468999999999999999999999999999987 5789999999
Q ss_pred hhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC-CCCcEEEEEecChHHHHHhhhcCccccccccceeccc
Q 003769 287 LKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG-ESERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTI 365 (796)
Q Consensus 287 lh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~-~~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~v 365 (796)
++.|.+.+. .... ...+....+|...+.++. ..+.+.+||+|+... ..||+|.|||+. .+.+
T Consensus 119 id~l~~~~~----~~~~-------~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~-----~ld~al~~Rf~~-~i~~ 181 (322)
T 3eie_A 119 VDALTGTRG----EGES-------EASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW-----QLDSAIRRRFER-RIYI 181 (322)
T ss_dssp GGGGSCC-----------------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGG-----GSCHHHHHHCCE-EEEC
T ss_pred hhhhhccCC----CCcc-------hHHHHHHHHHHHHhccccccCCceEEEEecCChh-----hCCHHHHcccCe-EEEe
Confidence 999987642 1110 122333232444443332 367799999998542 478999999863 4555
Q ss_pred CCCCcc
Q 003769 366 PVGSLS 371 (796)
Q Consensus 366 p~~~l~ 371 (796)
|.|+..
T Consensus 182 ~~p~~~ 187 (322)
T 3eie_A 182 PLPDLA 187 (322)
T ss_dssp CCCCHH
T ss_pred CCCCHH
Confidence 555444
No 28
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.31 E-value=1.1e-11 Score=137.43 Aligned_cols=151 Identities=11% Similarity=0.087 Sum_probs=97.6
Q ss_pred ChHHHHHHHHHHhh-------------ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccch
Q 003769 192 DSDDVMSVLNALIN-------------KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSK 258 (796)
Q Consensus 192 r~~ei~~vi~~L~r-------------~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~r 258 (796)
.++.++.+.+.+.. ..++++|+||||||||++|+.+|.+. +..|+.++.+.+...|.
T Consensus 120 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~----------~~~~~~v~~~~l~~~~~ 189 (389)
T 3vfd_A 120 QDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES----------NATFFNISAASLTSKYV 189 (389)
T ss_dssp CHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT----------TCEEEEECSCCC-----
T ss_pred HHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh----------cCcEEEeeHHHhhcccc
Confidence 66666666666521 35799999999999999999999874 57899999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC--CCCcEEEE
Q 003769 259 GEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG--ESERVWIM 336 (796)
Q Consensus 259 ge~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~--~~G~l~~I 336 (796)
|+++..++.+++.++. ..+.||||||+|.|...+.. ... ........+|...+.+.. ..+.+.+|
T Consensus 190 g~~~~~~~~~~~~a~~--~~~~il~iDEid~l~~~~~~----~~~-------~~~~~~~~~ll~~l~~~~~~~~~~v~vI 256 (389)
T 3vfd_A 190 GEGEKLVRALFAVARE--LQPSIIFIDQVDSLLCERRE----GEH-------DASRRLKTEFLIEFDGVQSAGDDRVLVM 256 (389)
T ss_dssp --CHHHHHHHHHHHHH--SSSEEEEEETGGGGC-------------------CTHHHHHHHHHHHHHHHC-----CEEEE
T ss_pred chHHHHHHHHHHHHHh--cCCeEEEEECchhhcccCCC----ccc-------hHHHHHHHHHHHHhhcccccCCCCEEEE
Confidence 9999999999999987 46799999999999876321 010 122222222333332222 14679999
Q ss_pred EecChHHHHHhhhcCccccccccceecccCCCCcc
Q 003769 337 GIASFQTYTRCKAGHPSLENMWKLHPFTIPVGSLS 371 (796)
Q Consensus 337 GatT~~ey~k~~~~dpaLerrf~lq~V~vp~~~l~ 371 (796)
|+|+... ..+++|.+||.. .+.+|.++..
T Consensus 257 ~atn~~~-----~l~~~l~~R~~~-~i~i~~p~~~ 285 (389)
T 3vfd_A 257 GATNRPQ-----ELDEAVLRRFIK-RVYVSLPNEE 285 (389)
T ss_dssp EEESCGG-----GCCHHHHTTCCE-EEECCCCCHH
T ss_pred EecCCch-----hcCHHHHcCcce-EEEcCCcCHH
Confidence 9998632 568999999862 3455544433
No 29
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.30 E-value=1.2e-11 Score=135.76 Aligned_cols=137 Identities=12% Similarity=0.207 Sum_probs=96.0
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
..++++|+||||||||++|+.+|..+ +..|+.++...+..+|.|+.+..++.++..++. ..+.|||||
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~----------~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~--~~~~vl~iD 150 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEA----------NSTFFSVSSSDLVSKWMGESEKLVKQLFAMARE--NKPSIIFID 150 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHH----------TCEEEEEEHHHHHSCC---CHHHHHHHHHHHHH--TSSEEEEEE
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh----------CCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHH--cCCeEEEEe
Confidence 35689999999999999999999986 468999999998889999999999999999886 578999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC-CCCcEEEEEecChHHHHHhhhcCccccccccceecc
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG-ESERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFT 364 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~-~~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~ 364 (796)
|++.+.+.+. .... .....+..+|..++.++. ....+.+||+|+... ..||+|-|||+ ..+.
T Consensus 151 Eid~l~~~r~----~~~~-------~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~-----~ld~al~rRf~-~~i~ 213 (355)
T 2qp9_X 151 QVDALTGTRG----EGES-------EASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW-----QLDSAIRRRFE-RRIY 213 (355)
T ss_dssp CGGGGTC----------C-------THHHHHHHHHHHHHHHCC---CCEEEEEEESCGG-----GSCHHHHHTCC-EEEE
T ss_pred chHhhcccCC----CCcc-------hHHHHHHHHHHHHhhcccccCCCeEEEeecCCcc-----cCCHHHHcccC-EEEE
Confidence 9999987642 1111 133333333444443332 246799999998643 57899999985 3445
Q ss_pred cCCCCcc
Q 003769 365 IPVGSLS 371 (796)
Q Consensus 365 vp~~~l~ 371 (796)
+|.|+..
T Consensus 214 i~~P~~~ 220 (355)
T 2qp9_X 214 IPLPDLA 220 (355)
T ss_dssp CCCCCHH
T ss_pred eCCcCHH
Confidence 5555443
No 30
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.28 E-value=3.5e-11 Score=132.01 Aligned_cols=137 Identities=15% Similarity=0.157 Sum_probs=97.6
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
..++++|+||||||||++++.+|..+ +..++.++.+.+...+.|+.+..++.++..++. ..+.|||||
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~----------~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~--~~~~vl~iD 183 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS----------GATFFSISASSLTSKWVGEGEKMVRALFAVARC--QQPAVIFID 183 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT----------TCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHH--TCSEEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc----------CCeEEEEehHHhhccccchHHHHHHHHHHHHHh--cCCeEEEEe
Confidence 56789999999999999999999875 468999999999999999999999999998886 568999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC--CCCcEEEEEecChHHHHHhhhcCccccccccceec
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG--ESERVWIMGIASFQTYTRCKAGHPSLENMWKLHPF 363 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~--~~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V 363 (796)
|++.|.+.+.. | .. ........+|...+.+.. ..+.+.+||+|+... ..+++|.+||. ..+
T Consensus 184 Eid~l~~~~~~--~--~~-------~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~-----~l~~~l~~Rf~-~~i 246 (357)
T 3d8b_A 184 EIDSLLSQRGD--G--EH-------ESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ-----EIDEAARRRLV-KRL 246 (357)
T ss_dssp THHHHTBC-----------------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG-----GBCHHHHTTCC-EEE
T ss_pred CchhhhccCCC--C--cc-------hHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh-----hCCHHHHhhCc-eEE
Confidence 99999876421 1 11 022222222332332211 246799999998642 57899999986 244
Q ss_pred ccCCCCcc
Q 003769 364 TIPVGSLS 371 (796)
Q Consensus 364 ~vp~~~l~ 371 (796)
.+|.|+..
T Consensus 247 ~i~~p~~~ 254 (357)
T 3d8b_A 247 YIPLPEAS 254 (357)
T ss_dssp ECCCCCHH
T ss_pred EeCCcCHH
Confidence 45544433
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.27 E-value=2.9e-11 Score=128.52 Aligned_cols=140 Identities=13% Similarity=0.132 Sum_probs=103.6
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
...+++|+||||||||++++.+|..+.... .+.+..++.++...+...+.|+.+.++.++++... +.|||||
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~---~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~-----~~vl~iD 137 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLG---YVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAM-----GGVLFID 137 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTT---SSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHHT-----TSEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcC---CcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhcC-----CCEEEEE
Confidence 345789999999999999999999986532 23456799999998888888998888888877653 4699999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccccccceeccc
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTI 365 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~v 365 (796)
|++.|.+.+. ... + ..+..+. |..++.. .++.+.+|++|+...+..+...+|+|.+||. +.|.+
T Consensus 138 Eid~l~~~~~-----~~~------~-~~~~~~~-Ll~~l~~--~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~-~~i~~ 201 (309)
T 3syl_A 138 EAYYLYRPDN-----ERD------Y-GQEAIEI-LLQVMEN--NRDDLVVILAGYADRMENFFQSNPGFRSRIA-HHIEF 201 (309)
T ss_dssp TGGGSCCCC--------C------C-THHHHHH-HHHHHHH--CTTTCEEEEEECHHHHHHHHHHSTTHHHHEE-EEEEE
T ss_pred ChhhhccCCC-----ccc------c-cHHHHHH-HHHHHhc--CCCCEEEEEeCChHHHHHHHhhCHHHHHhCC-eEEEc
Confidence 9999986521 111 0 2233333 4444422 2567999999999888888888999999985 56777
Q ss_pred CCCC
Q 003769 366 PVGS 369 (796)
Q Consensus 366 p~~~ 369 (796)
|.++
T Consensus 202 ~~~~ 205 (309)
T 3syl_A 202 PDYS 205 (309)
T ss_dssp CCCC
T ss_pred CCcC
Confidence 6654
No 32
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.26 E-value=6.3e-11 Score=124.61 Aligned_cols=137 Identities=12% Similarity=0.127 Sum_probs=100.4
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
..++++|+||||||||++++.+|..+ +..++.++...+...+.|+.+..++.++..++. ..+.|||||
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~----------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vl~iD 117 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATET----------NATFIRVVGSELVKKFIGEGASLVKDIFKLAKE--KAPSIIFID 117 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHT----------TCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHH--TCSEEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEehHHHHHhccchHHHHHHHHHHHHHH--cCCeEEEEE
Confidence 46789999999999999999999875 468999999999889999999999999999887 568999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhc---CCCCcEEEEEecChHHHHHhhhcCccccc--cccc
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEI---GESERVWIMGIASFQTYTRCKAGHPSLEN--MWKL 360 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~---~~~G~l~~IGatT~~ey~k~~~~dpaLer--rf~l 360 (796)
|++.+...+.. ...+ + ..+.... |..++..+ ..++.+.+|++|+..+ ..+|++-| ||..
T Consensus 118 Eid~l~~~~~~---~~~~----~---~~~~~~~-l~~ll~~~~~~~~~~~~~vI~ttn~~~-----~l~~~l~~~~Rf~~ 181 (285)
T 3h4m_A 118 EIDAIAAKRTD---ALTG----G---DREVQRT-LMQLLAEMDGFDARGDVKIIGATNRPD-----ILDPAILRPGRFDR 181 (285)
T ss_dssp TTHHHHBCCSS---SCCG----G---GGHHHHH-HHHHHHHHHTTCSSSSEEEEEECSCGG-----GBCHHHHSTTSEEE
T ss_pred CHHHhcccCcc---ccCC----c---cHHHHHH-HHHHHHHhhCCCCCCCEEEEEeCCCch-----hcCHHHcCCCcCCe
Confidence 99999876421 1110 0 1111122 44455332 2356899999998642 46899988 8753
Q ss_pred eecccCCCCcc
Q 003769 361 HPFTIPVGSLS 371 (796)
Q Consensus 361 q~V~vp~~~l~ 371 (796)
.+.+|.|+..
T Consensus 182 -~i~~~~p~~~ 191 (285)
T 3h4m_A 182 -IIEVPAPDEK 191 (285)
T ss_dssp -EEECCCCCHH
T ss_pred -EEEECCCCHH
Confidence 4566655544
No 33
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.25 E-value=1.6e-11 Score=131.35 Aligned_cols=141 Identities=16% Similarity=0.188 Sum_probs=100.8
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
..++++|+||||||||++++.+|..+ +..++.++...+..++.|+.+.+++.+++.++. ..+.|||||
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~----------~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~--~~p~il~iD 115 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISIKGPELLTMWFGESEANVREIFDKARQ--AAPCVLFFD 115 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT----------TCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHH--TCSEEEEEC
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh----------CCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHh--cCCeEEEEE
Confidence 45789999999999999999999875 367999998888888889999999999999886 568999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccc--cccceec
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLEN--MWKLHPF 363 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLer--rf~lq~V 363 (796)
|++.+...+.. ..+. .++ ..+....+|...+.++.....+.+||+|+... ..||++-| ||+ ..+
T Consensus 116 Eid~l~~~~~~----~~~~-~~~---~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~-----~ld~al~r~gRf~-~~i 181 (301)
T 3cf0_A 116 ELDSIAKARGG----NIGD-GGG---AADRVINQILTEMDGMSTKKNVFIIGATNRPD-----IIDPAILRPGRLD-QLI 181 (301)
T ss_dssp STTHHHHHHTT----TTCC-SSC---SCCHHHHHHHHHHHSSCTTSSEEEEEEESCGG-----GSCGGGGSTTSSC-EEE
T ss_pred ChHHHhhccCC----CcCC-cch---HHHHHHHHHHHHhhcccCCCCEEEEEecCCcc-----ccChHHhcCCccc-eEE
Confidence 99999987531 1100 001 11222222444443332356799999998653 46899988 886 355
Q ss_pred ccCCCCccc
Q 003769 364 TIPVGSLSL 372 (796)
Q Consensus 364 ~vp~~~l~~ 372 (796)
.+|.|+...
T Consensus 182 ~i~~p~~~~ 190 (301)
T 3cf0_A 182 YIPLPDEKS 190 (301)
T ss_dssp ECCCCCHHH
T ss_pred ecCCcCHHH
Confidence 666555443
No 34
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.22 E-value=6.1e-11 Score=135.69 Aligned_cols=138 Identities=14% Similarity=0.157 Sum_probs=103.2
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
..++++|+||||||||+++++++.+. +..|+.++.+.+...+.|+.+..++.+++.+.. +.+.|||||
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~----------~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~--~~p~iLfLD 304 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANET----------GAFFFLINGPEIMSKLAGESESNLRKAFEEAEK--NAPAIIFID 304 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHC----------SSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHH--TCSEEEEEE
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHh----------CCCEEEEEchHhhhhhcchhHHHHHHHHHHHHh--cCCcEEEec
Confidence 45789999999999999999999874 478999999999999999999999999999987 578999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccc--cccceec
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLEN--MWKLHPF 363 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLer--rf~lq~V 363 (796)
|++.|.+.+. ...+ ........+|..++.+...++.+.+|+||+... ..+|+|.+ ||+. .+
T Consensus 305 EId~l~~~~~----~~~~-------~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~-----~Ld~al~r~gRf~~-~i 367 (489)
T 3hu3_A 305 ELDAIAPKRE----KTHG-------EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN-----SIDPALRRFGRFDR-EV 367 (489)
T ss_dssp SHHHHCBCTT----SCCC-------HHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGG-----GBCGGGGSTTSSCE-EE
T ss_pred chhhhccccc----cccc-------hHHHHHHHHHHHHhhccccCCceEEEEecCCcc-----ccCHHHhCCCcCce-EE
Confidence 9999998642 1111 011222222445554333467899999999752 46899998 7753 35
Q ss_pred ccCCCCccc
Q 003769 364 TIPVGSLSL 372 (796)
Q Consensus 364 ~vp~~~l~~ 372 (796)
.++.|++..
T Consensus 368 ~i~~P~~~e 376 (489)
T 3hu3_A 368 DIGIPDATG 376 (489)
T ss_dssp ECCCCCHHH
T ss_pred EeCCCCHHH
Confidence 665555443
No 35
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.22 E-value=2.9e-11 Score=136.70 Aligned_cols=134 Identities=9% Similarity=0.203 Sum_probs=91.4
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
..++++|+||||||||++++++|..+ .+..|+.++.+.+..+|.|+.+..++.++..++. ..+.|||||
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~---------~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~--~~~~vl~iD 234 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA---------NNSTFFSISSSDLVSKWLGESEKLVKNLFQLARE--NKPSIIFID 234 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC---------CSSEEEEECCC---------CCCTHHHHHHHHHH--SCSEEEEES
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---------CCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHH--cCCeEEEEe
Confidence 44789999999999999999999875 3568999999999889999999999999999886 578999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC----CCCcEEEEEecChHHHHHhhhcCccccccccce
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG----ESERVWIMGIASFQTYTRCKAGHPSLENMWKLH 361 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~----~~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq 361 (796)
|++.+.+.+. .... .....+ +..|+..++ ..+.+.+||+|+.. -..||+|-|||+ .
T Consensus 235 Eid~l~~~~~----~~~~-------~~~~~~---~~~lL~~l~~~~~~~~~v~vI~atn~~-----~~ld~al~rRf~-~ 294 (444)
T 2zan_A 235 EIDSLCGSRS----ENES-------EAARRI---KTEFLVQMQGVGVDNDGILVLGATNIP-----WVLDSAIRRRFE-K 294 (444)
T ss_dssp CTTTTCCCSS----CCCC-------GGGHHH---HHHHHTTTTCSSCCCSSCEEEEEESCG-----GGSCHHHHTTCC-E
T ss_pred chHhhccCCC----Cccc-------cHHHHH---HHHHHHHHhCcccCCCCEEEEecCCCc-----cccCHHHHhhcc-e
Confidence 9999987642 1111 122222 224554442 25679999999865 257899999985 2
Q ss_pred ecccCCCCc
Q 003769 362 PFTIPVGSL 370 (796)
Q Consensus 362 ~V~vp~~~l 370 (796)
.+.+|.|+.
T Consensus 295 ~i~i~~P~~ 303 (444)
T 2zan_A 295 RIYIPLPEA 303 (444)
T ss_dssp EEECCCCCH
T ss_pred EEEeCCcCH
Confidence 444554443
No 36
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.20 E-value=1.3e-10 Score=120.66 Aligned_cols=137 Identities=10% Similarity=0.164 Sum_probs=95.7
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEcc
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLGD 286 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfIDE 286 (796)
+++++|+||||+|||++++.++... +..++.++...+...+.|+.+.+++.+++.+.. ..+.||||||
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~----------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~il~iDe 112 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA----------KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKK--AAPCIIFIDE 112 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH----------TCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHT--TCSEEEEETT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc----------CCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHH--cCCeeehhhh
Confidence 5678999999999999999999875 245888998888888888888999999998876 4689999999
Q ss_pred hhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC---CCCcEEEEEecChHHHHHhhhcCccccc--cccce
Q 003769 287 LKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG---ESERVWIMGIASFQTYTRCKAGHPSLEN--MWKLH 361 (796)
Q Consensus 287 lh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~---~~G~l~~IGatT~~ey~k~~~~dpaLer--rf~lq 361 (796)
++.+...+.. +..+ +. ...... +..++..++ ....+.+|++|+..+ ..||++-| ||..
T Consensus 113 id~l~~~~~~---~~~~----~~-~~~~~~---~~~ll~~l~~~~~~~~~~vI~~tn~~~-----~l~~~l~r~~rf~~- 175 (257)
T 1lv7_A 113 IDAVGRQRGA---GLGG----GH-DEREQT---LNQMLVEMDGFEGNEGIIVIAATNRPD-----VLDPALLRPGRFDR- 175 (257)
T ss_dssp HHHHTCCCST---TSCC----TT-CHHHHH---HHHHHHHHHTCCSSSCEEEEEEESCTT-----TSCGGGGSTTSSCE-
T ss_pred hhhhccCCCC---CcCC----Cc-hHHHHH---HHHHHHHhhCcccCCCEEEEEeeCCch-----hCCHHHcCCCcCCe-
Confidence 9999876321 0010 00 011111 223332221 256799999998652 46899988 8764
Q ss_pred ecccCCCCccc
Q 003769 362 PFTIPVGSLSL 372 (796)
Q Consensus 362 ~V~vp~~~l~~ 372 (796)
.+.++.|++..
T Consensus 176 ~i~i~~P~~~~ 186 (257)
T 1lv7_A 176 QVVVGLPDVRG 186 (257)
T ss_dssp EEECCCCCHHH
T ss_pred EEEeCCCCHHH
Confidence 56665555443
No 37
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.20 E-value=1.3e-10 Score=132.55 Aligned_cols=136 Identities=13% Similarity=0.180 Sum_probs=96.6
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEcc
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLGD 286 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfIDE 286 (796)
+++++|+||||||||++++.++.+. +..|+.++.+.+...|.|..+.+++.+++.++. ..++||||||
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~----------~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~--~~p~ILfIDE 116 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEA----------NVPFFHISGSDFVELFVGVGAARVRDLFAQAKA--HAPCIVFIDE 116 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH----------TCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHH--TCSEEEEEET
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc----------CCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHh--cCCCEEEEec
Confidence 4679999999999999999999875 357999999999989999999999999999987 5789999999
Q ss_pred hhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhc---CCCCcEEEEEecChHHHHHhhhcCccccc--cccce
Q 003769 287 LKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEI---GESERVWIMGIASFQTYTRCKAGHPSLEN--MWKLH 361 (796)
Q Consensus 287 lh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~---~~~G~l~~IGatT~~ey~k~~~~dpaLer--rf~lq 361 (796)
++.+...+.. + ..| +....... +..|+..+ +.+..+.+|++|+..+ ..||+|-| ||+.
T Consensus 117 id~l~~~r~~--~-~~g----~~~~~~~~----l~~LL~~ld~~~~~~~viVIaaTn~~~-----~Ld~allR~gRFd~- 179 (476)
T 2ce7_A 117 IDAVGRHRGA--G-LGG----GHDEREQT----LNQLLVEMDGFDSKEGIIVMAATNRPD-----ILDPALLRPGRFDK- 179 (476)
T ss_dssp GGGTCCC----------------CHHHHH----HHHHHHHHHHSCGGGTEEEEEEESCGG-----GSCGGGGSTTSSCE-
T ss_pred hhhhhhhccc--c-cCc----CcHHHHHH----HHHHHHHHhccCCCCCEEEEEecCChh-----hhchhhcccCccee-
Confidence 9999876421 0 011 00001111 33344322 2245699999998753 36899988 7763
Q ss_pred ecccCCCCcc
Q 003769 362 PFTIPVGSLS 371 (796)
Q Consensus 362 ~V~vp~~~l~ 371 (796)
.|.++.|++.
T Consensus 180 ~i~i~~Pd~~ 189 (476)
T 2ce7_A 180 KIVVDPPDML 189 (476)
T ss_dssp EEECCCCCHH
T ss_pred EeecCCCCHH
Confidence 4555555544
No 38
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.19 E-value=1.8e-10 Score=119.05 Aligned_cols=138 Identities=11% Similarity=0.137 Sum_probs=89.7
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
.+++++|+||||||||++++.++.++ +..++.++.+.+...+.|+.+..++.+++.+.. ..+.|||||
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~vl~iD 105 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA----------QVPFLAMAGAEFVEVIGGLGAARVRSLFKEARA--RAPCIVYID 105 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH----------TCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHH--TCSEEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEechHHHHhhccChhHHHHHHHHHHHHh--cCCeEEEEe
Confidence 45678999999999999999999976 357899999888888899999999999999886 568999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhc---CCCCcEEEEEecChHHHHHhhhcCccccc--cccc
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEI---GESERVWIMGIASFQTYTRCKAGHPSLEN--MWKL 360 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~---~~~G~l~~IGatT~~ey~k~~~~dpaLer--rf~l 360 (796)
|++.+...+... ..+.. ..+.... |..|+..+ +....+.+|++|+... ..|+++-| ||.
T Consensus 106 eid~l~~~~~~~---~~~~~------~~~~~~~-l~~ll~~~~~~~~~~~~~vi~~tn~~~-----~ld~~l~~~~R~~- 169 (262)
T 2qz4_A 106 EIDAVGKKRSTT---MSGFS------NTEEEQT-LNQLLVEMDGMGTTDHVIVLASTNRAD-----ILDGALMRPGRLD- 169 (262)
T ss_dssp CC----------------------------CHH-HHHHHHHHHTCCTTCCEEEEEEESCGG-----GGGSGGGSTTSCC-
T ss_pred Ccchhhcccccc---ccCcc------chhHHHH-HHHHHHHhhCcCCCCCEEEEecCCChh-----hcCHHHhcCCcCC-
Confidence 999998764210 00000 0001111 33343222 1245799999998653 35789988 884
Q ss_pred eecccCCCCcc
Q 003769 361 HPFTIPVGSLS 371 (796)
Q Consensus 361 q~V~vp~~~l~ 371 (796)
..+.+|.|+..
T Consensus 170 ~~i~i~~p~~~ 180 (262)
T 2qz4_A 170 RHVFIDLPTLQ 180 (262)
T ss_dssp EEEECCSCCHH
T ss_pred eEEEeCCcCHH
Confidence 34555554443
No 39
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.17 E-value=3.2e-11 Score=125.94 Aligned_cols=139 Identities=14% Similarity=0.164 Sum_probs=97.1
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDV 660 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~ 660 (796)
++||+.++..+.+.+.++... ...+||.||+| +|||.+|++|++...... ..|+.++++.+. +......+.|..
T Consensus 8 ~ig~~~~~~~~~~~~~~~~~~--~~~vll~G~~G--tGKt~la~~i~~~~~~~~-~~~~~v~~~~~~-~~~~~~~l~g~~ 81 (265)
T 2bjv_A 8 LLGEANSFLEVLEQVSHLAPL--DKPVLIIGERG--TGKELIASRLHYLSSRWQ-GPFISLNCAALN-ENLLDSELFGHE 81 (265)
T ss_dssp --CCCHHHHHHHHHHHHHTTS--CSCEEEECCTT--SCHHHHHHHHHHTSTTTT-SCEEEEEGGGSC-HHHHHHHHHCCC
T ss_pred ceeCCHHHHHHHHHHHHHhCC--CCCEEEECCCC--CcHHHHHHHHHHhcCccC-CCeEEEecCCCC-hhHHHHHhcCCc
Confidence 789999999998888765432 35789999999 999999999999987665 789999998763 222111111211
Q ss_pred --CCCCCC--chhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 661 --ELGCCS--YIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 661 --~~~~~~--~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
.|.|.. ..+.| ..-...||+||||++. ++ ++++.|++++++|+++...+....-.+..||+|||.
T Consensus 82 ~~~~~g~~~~~~~~l----~~a~~~~l~lDEi~~l--~~-~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 82 AGAFTGAQKRHPGRF----ERADGGTLFLDELATA--PM-MVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp ---------CCCCHH----HHTTTSEEEEESGGGS--CH-HHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred ccccccccccccchh----hhcCCcEEEEechHhc--CH-HHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 122211 11223 2335689999999999 99 999999999999999875554444467889999984
No 40
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.16 E-value=1.8e-10 Score=121.93 Aligned_cols=134 Identities=8% Similarity=0.111 Sum_probs=94.0
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEcc
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLGD 286 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfIDE 286 (796)
.++++|+||||||||++++.++... +..++.++.+.+...+.|+.+..++.++..+.. ..+.||||||
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~----------~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~vl~iDE 121 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC----------SATFLNISAASLTSKYVGDGEKLVRALFAVARH--MQPSIIFIDE 121 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT----------TCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHH--TCSEEEEEET
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh----------CCCeEEeeHHHHhhcccchHHHHHHHHHHHHHH--cCCcEEEecc
Confidence 5789999999999999999999875 467999999888888899999999999998886 5789999999
Q ss_pred hhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCC---CCcEEEEEecChHHHHHhhhcCccccccccceec
Q 003769 287 LKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGE---SERVWIMGIASFQTYTRCKAGHPSLENMWKLHPF 363 (796)
Q Consensus 287 lh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~---~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V 363 (796)
++.+...+.. ... ........+|-..+.+... .+.+.+|++|+... ..+|++.+||+ ..+
T Consensus 122 id~l~~~~~~----~~~-------~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~-----~l~~~l~~R~~-~~i 184 (297)
T 3b9p_A 122 VDSLLSERSS----SEH-------EASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ-----ELDEAALRRFT-KRV 184 (297)
T ss_dssp GGGTSBCC----------------CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG-----GBCHHHHHHCC-EEE
T ss_pred HHHhcccccc----Ccc-------hHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh-----hCCHHHHhhCC-eEE
Confidence 9999876421 000 0111211112222222211 25699999998653 46899999986 345
Q ss_pred ccCCCC
Q 003769 364 TIPVGS 369 (796)
Q Consensus 364 ~vp~~~ 369 (796)
.+|.|+
T Consensus 185 ~~~~p~ 190 (297)
T 3b9p_A 185 YVSLPD 190 (297)
T ss_dssp ECCCCC
T ss_pred EeCCcC
Confidence 555443
No 41
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.15 E-value=2.5e-11 Score=129.73 Aligned_cols=134 Identities=14% Similarity=0.033 Sum_probs=82.9
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHH----hccCCCEE
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVK----SYMGRGIV 281 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~----~~~~~~~I 281 (796)
.+++++|+||||||||++++.+|..+ +..++.++.+.+...|.|+.+.+++++++.+. . ..++|
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l----------~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~--~~~~v 102 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM----------GINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRK--GNMCC 102 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH----------TCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTT--SSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhc--CCCeE
Confidence 34677888999999999999999987 46899999999999999999999999998883 3 56899
Q ss_pred EEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhc---------C--CCCcEEEEEecChHHHHHhhhc
Q 003769 282 LYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEI---------G--ESERVWIMGIASFQTYTRCKAG 350 (796)
Q Consensus 282 LfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~---------~--~~G~l~~IGatT~~ey~k~~~~ 350 (796)
|||||++.+.+.+. |...+. . .....+..|..++.+. . ..+.+.+|+||+..+ ..
T Consensus 103 l~iDEiD~~~~~~~---~~~~~~---~---~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~-----~l 168 (293)
T 3t15_A 103 LFINDLDAGAGRMG---GTTQYT---V---NNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS-----TL 168 (293)
T ss_dssp EEEECCC-----------------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC-----C-
T ss_pred EEEechhhhcCCCC---CCcccc---c---hHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc-----cC
Confidence 99999999987532 211110 0 0111111144444211 0 245689999998532 46
Q ss_pred Cccccc--cccceecccC
Q 003769 351 HPSLEN--MWKLHPFTIP 366 (796)
Q Consensus 351 dpaLer--rf~lq~V~vp 366 (796)
||+|-| ||+. .+.+|
T Consensus 169 d~al~R~~R~d~-~i~~P 185 (293)
T 3t15_A 169 YAPLIRDGRMEK-FYWAP 185 (293)
T ss_dssp -CHHHHHHHEEE-EEECC
T ss_pred CHHHhCCCCCce-eEeCc
Confidence 889987 5542 23455
No 42
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.09 E-value=6.2e-09 Score=124.97 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=58.8
Q ss_pred hhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHhhcCCCChhhHHHHHHHHHHHh
Q 003769 10 QALTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKALELCFNVAL 79 (796)
Q Consensus 10 erfT~~A~~vL~~A~~~Ar~~gh~~VtpeHLLlaLL~~~~g~l~~iL~~~~gi~~~~d~~aL~~~l~~~L 79 (796)
-.||+.+.++|..|..+|+++||.+|+++|||+||+.++++.+.++|.+ +|+ +. +.++..+...+
T Consensus 78 ~~~s~~~~~vl~~A~~~A~~~~~~~I~~ehlLlall~~~~~~a~~~L~~-~gv-~~---~~l~~~i~~~~ 142 (758)
T 3pxi_A 78 IHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNN-LGV-SL---NKARQQVLQLL 142 (758)
T ss_dssp CEECHHHHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCCSHHHHHHHH-TTC-CH---HHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhcCCcHHHHHHHH-cCC-CH---HHHHHHHHHHh
Confidence 3599999999999999999999999999999999999999999999999 999 76 77777776544
No 43
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.07 E-value=5.4e-10 Score=118.70 Aligned_cols=139 Identities=15% Similarity=0.145 Sum_probs=102.8
Q ss_pred cHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHhhc-----------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcC
Q 003769 564 TDENLKVLSDALERKAVVPWQKEIMPEIARTILECRS-----------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFG 632 (796)
Q Consensus 564 ~~e~L~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~rs-----------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg 632 (796)
+...+..+.+.|.+. |+||++++..|.+.+..... .++...+||.||+| +|||.+|+++|+.+..
T Consensus 18 ~~~~~~~~~~~l~~~--i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~G--tGKT~la~~la~~l~~ 93 (309)
T 3syl_A 18 EGSGAKEVLEELDRE--LIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPG--TGKTTVALKMAGLLHR 93 (309)
T ss_dssp HHTTHHHHHHHHHHH--SSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTT--SSHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHH--ccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCC--CCHHHHHHHHHHHHHh
Confidence 345677888999999 99999999999887754321 45667899999999 9999999999999854
Q ss_pred CC---CCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCEEEEEcccccC-------CCChHHHHHHH
Q 003769 633 SH---SNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHRVFFMEDLDDH-------KVDSCYCQKGL 702 (796)
Q Consensus 633 ~~---~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vvl~deieka-------~~~~~~v~~~l 702 (796)
.. ...++.+++++.. ..+.|.. ...+.+.+......||+||||+.. +.++ .+++.|
T Consensus 94 ~~~~~~~~~~~~~~~~l~------------~~~~g~~-~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~-~~~~~L 159 (309)
T 3syl_A 94 LGYVRKGHLVSVTRDDLV------------GQYIGHT-APKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQ-EAIEIL 159 (309)
T ss_dssp TTSSSSCCEEEECGGGTC------------CSSTTCH-HHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTH-HHHHHH
T ss_pred cCCcCCCcEEEEcHHHhh------------hhccccc-HHHHHHHHHhcCCCEEEEEChhhhccCCCcccccH-HHHHHH
Confidence 32 0367888765431 0122221 234556666667789999999944 3388 999999
Q ss_pred HHHHHcceEecCCCceecCCcEEEEeeCC
Q 003769 703 KQAIENGCIALADGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 703 ~q~~d~G~l~d~~G~~v~~~n~IiilTsn 731 (796)
++.+++++ .+.+||+|+|
T Consensus 160 l~~l~~~~-----------~~~~~i~~~~ 177 (309)
T 3syl_A 160 LQVMENNR-----------DDLVVILAGY 177 (309)
T ss_dssp HHHHHHCT-----------TTCEEEEEEC
T ss_pred HHHHhcCC-----------CCEEEEEeCC
Confidence 99999863 5678999886
No 44
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.05 E-value=6.9e-11 Score=136.94 Aligned_cols=145 Identities=19% Similarity=0.242 Sum_probs=96.4
Q ss_pred HHHhhcCCCCCCcchHHHHHHHHHHHhhc--cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccc
Q 003769 572 SDALERKAVVPWQKEIMPEIARTILECRS--KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQD 649 (796)
Q Consensus 572 ~~~L~~~~~v~gQ~~av~~ia~~i~~~rs--~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~ 649 (796)
.+.|.+. ++||+++...+...+..... .-+...++|.||+| +|||.+||.||..+ + ..+++++++... +
T Consensus 76 ~~~l~~d--i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~G--tGKTtlar~ia~~l-~---~~~~~i~~~~~~-~ 146 (543)
T 3m6a_A 76 GRLLDEE--HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPG--VGKTSLAKSIAKSL-G---RKFVRISLGGVR-D 146 (543)
T ss_dssp GGTHHHH--CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSS--SSHHHHHHHHHHHH-T---CEEEEECCCC----
T ss_pred HHHHHHH--hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCC--CCHHHHHHHHHHhc-C---CCeEEEEecccc-h
Confidence 4456788 99999999999877654443 33556899999999 99999999999999 3 458999987542 1
Q ss_pred cccccccCCC-CCCCCC--Cch-hhHHHHHHhCCCEEEEEcccccCCCChHH----HHHHHHHHHHcce---Eec-CCCc
Q 003769 650 DCRTKKRSRD-VELGCC--SYI-ERLGLALNENPHRVFFMEDLDDHKVDSCY----CQKGLKQAIENGC---IAL-ADGE 717 (796)
Q Consensus 650 ~~~~~k~~~~-~~~~~~--~~~-~~L~eavr~~P~~Vvl~deieka~~~~~~----v~~~l~q~~d~G~---l~d-~~G~ 717 (796)
.. ...+. ..|.|. +.+ ..+..+...+| |+|||||++. ++ + .++.|++++|++. +.+ ..+.
T Consensus 147 ~~---~~~g~~~~~ig~~~~~~~~~~~~a~~~~~--vl~lDEid~l--~~-~~~~~~~~~LL~~ld~~~~~~~~~~~~~~ 218 (543)
T 3m6a_A 147 ES---EIRGHRRTYVGAMPGRIIQGMKKAGKLNP--VFLLDEIDKM--SS-DFRGDPSSAMLEVLDPEQNSSFSDHYIEE 218 (543)
T ss_dssp --------------------CHHHHHHTTCSSSE--EEEEEESSSC--C----------CCGGGTCTTTTTBCCCSSSCC
T ss_pred hh---hhhhHHHHHhccCchHHHHHHHHhhccCC--EEEEhhhhhh--hh-hhccCHHHHHHHHHhhhhcceeecccCCe
Confidence 11 11111 112222 222 23444444666 9999999999 87 6 5699999998765 344 3467
Q ss_pred eecCCcEEEEeeCCCC
Q 003769 718 IVPLKDSIIIFSCDSL 733 (796)
Q Consensus 718 ~v~~~n~IiilTsn~~ 733 (796)
.+++.+++||+|+|..
T Consensus 219 ~~~~~~v~iI~ttN~~ 234 (543)
T 3m6a_A 219 TFDLSKVLFIATANNL 234 (543)
T ss_dssp CCBCSSCEEEEECSST
T ss_pred eecccceEEEeccCcc
Confidence 8999999999999964
No 45
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.98 E-value=5.5e-10 Score=119.30 Aligned_cols=127 Identities=16% Similarity=0.110 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHhhc----cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCC
Q 003769 587 IMPEIARTILECRS----KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVEL 662 (796)
Q Consensus 587 av~~ia~~i~~~rs----~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~ 662 (796)
.+..++..+.+... .++..-+||.||+| +|||.+|++||+.+ | ..|+++++++.. . + |
T Consensus 15 ~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppG--tGKT~la~aiA~~l-~---~~~i~v~~~~l~-~-----~------~ 76 (293)
T 3t15_A 15 FMDKLVVHITKNFLKLPNIKVPLILGIWGGKG--QGKSFQCELVFRKM-G---INPIMMSAGELE-S-----G------N 76 (293)
T ss_dssp HHHHHHHHHHHTTSCCTTCCCCSEEEEEECTT--SCHHHHHHHHHHHH-T---CCCEEEEHHHHH-C-----C-------
T ss_pred HHHHHHHHHHHHHHhcCCCCCCeEEEEECCCC--CCHHHHHHHHHHHh-C---CCEEEEeHHHhh-h-----c------c
Confidence 34455555554433 23334566889999 99999999999999 4 459999987441 1 1 1
Q ss_pred CCC--CchhhHHHH----HHhCCCEEEEEcccccCCCCh--H----------HHHHHHHHHHHcceEecCCC--ceecCC
Q 003769 663 GCC--SYIERLGLA----LNENPHRVFFMEDLDDHKVDS--C----------YCQKGLKQAIENGCIALADG--EIVPLK 722 (796)
Q Consensus 663 ~~~--~~~~~L~ea----vr~~P~~Vvl~deieka~~~~--~----------~v~~~l~q~~d~G~l~d~~G--~~v~~~ 722 (796)
.|. .++.++.+. +++++.+||||||||++ ++ . .+++.|++.+|....+...| ...+..
T Consensus 77 ~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~--~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~ 154 (293)
T 3t15_A 77 AGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG--AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENA 154 (293)
T ss_dssp --HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC----------------CHHHHHHHHHHHHHCCC-----------CCC
T ss_pred CchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh--cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCC
Confidence 121 122222222 36889999999999987 43 1 36799999999877654333 566788
Q ss_pred cEEEEeeCCCC
Q 003769 723 DSIIIFSCDSL 733 (796)
Q Consensus 723 n~IiilTsn~~ 733 (796)
+.+||+|||..
T Consensus 155 ~v~vI~ttN~~ 165 (293)
T 3t15_A 155 RVPIIVTGNDF 165 (293)
T ss_dssp CCCEEEECSSC
T ss_pred CcEEEEecCCc
Confidence 99999999954
No 46
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.96 E-value=3.4e-09 Score=112.24 Aligned_cols=136 Identities=12% Similarity=0.120 Sum_probs=91.2
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
-+++++|+||||+|||++++.||..+ +..++.++...+..+|.|+.+.++..+++..+. ..+.|+|+|
T Consensus 43 ~~~GvlL~Gp~GtGKTtLakala~~~----------~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~--~~p~i~~~D 110 (274)
T 2x8a_A 43 TPAGVLLAGPPGCGKTLLAKAVANES----------GLNFISVKGPELLNMYVGESERAVRQVFQRAKN--SAPCVIFFD 110 (274)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT----------TCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHH--TCSEEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHc----------CCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHh--cCCCeEeee
Confidence 45669999999999999999999864 246888998888888999999999999999865 468999999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccc--cccceec
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLEN--MWKLHPF 363 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLer--rf~lq~V 363 (796)
|++.+...+. .... +. ..+..+. +-.-+.+...+..+.++++|+..+. .||+|-| ||+ ..|
T Consensus 111 eid~~~~~r~----~~~~----~~--~~~~~~~-~l~~Lsgg~~~~~~i~ia~tn~p~~-----LD~al~r~gRfd-~~i 173 (274)
T 2x8a_A 111 EVDALCPRRS----DRET----GA--SVRVVNQ-LLTEMDGLEARQQVFIMAATNRPDI-----IDPAILRPGRLD-KTL 173 (274)
T ss_dssp TCTTTCC-------------------CTTHHHH-HHHHHHTCCSTTCEEEEEEESCGGG-----SCHHHHSTTSSC-EEE
T ss_pred hhhhhhcccC----CCcc----hH--HHHHHHH-HHHhhhcccccCCEEEEeecCChhh-----CCHhhcCcccCC-eEE
Confidence 9998876531 1110 00 1122222 2111221112344777788876543 4999998 886 345
Q ss_pred ccCCCCc
Q 003769 364 TIPVGSL 370 (796)
Q Consensus 364 ~vp~~~l 370 (796)
.+|-|+.
T Consensus 174 ~~~~P~~ 180 (274)
T 2x8a_A 174 FVGLPPP 180 (274)
T ss_dssp ECCSCCH
T ss_pred EeCCcCH
Confidence 5555443
No 47
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.94 E-value=7e-09 Score=108.67 Aligned_cols=132 Identities=11% Similarity=0.097 Sum_probs=85.9
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeeccccc-ccchHHHHHHHHHHHHHHHhccCCCEEEEE
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFR-NQSKGEVEQKLVELSCHVKSYMGRGIVLYL 284 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~-a~~rge~E~rl~~l~~~v~~~~~~~~ILfI 284 (796)
...+++|+||||||||++++.++... +..++.++..... ....++....++++++.+.. ..+.||||
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~----------~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~vl~i 130 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES----------NFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYK--SQLSCVVV 130 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH----------TCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHT--SSEEEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHh--cCCcEEEE
Confidence 56789999999999999999999974 3567777765432 24456666788888888775 46899999
Q ss_pred cchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC-CCCcEEEEEecChHHHHHhhhcCc-ccccccccee
Q 003769 285 GDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG-ESERVWIMGIASFQTYTRCKAGHP-SLENMWKLHP 362 (796)
Q Consensus 285 DElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~-~~G~l~~IGatT~~ey~k~~~~dp-aLerrf~lq~ 362 (796)
||++.+++.+. ++... .....+. |..++.... ....+.+|++|+..+.. ++ .+.+||. +.
T Consensus 131 DEid~l~~~~~---~~~~~--------~~~~l~~-L~~~~~~~~~~~~~~~ii~ttn~~~~l-----~~~~l~~rf~-~~ 192 (272)
T 1d2n_A 131 DDIERLLDYVP---IGPRF--------SNLVLQA-LLVLLKKAPPQGRKLLIIGTTSRKDVL-----QEMEMLNAFS-TT 192 (272)
T ss_dssp CCHHHHTTCBT---TTTBC--------CHHHHHH-HHHHTTCCCSTTCEEEEEEEESCHHHH-----HHTTCTTTSS-EE
T ss_pred EChhhhhccCC---CChhH--------HHHHHHH-HHHHhcCccCCCCCEEEEEecCChhhc-----chhhhhcccc-eE
Confidence 99999987631 11110 1112222 334442211 13458888888876532 23 5667874 45
Q ss_pred cccCC
Q 003769 363 FTIPV 367 (796)
Q Consensus 363 V~vp~ 367 (796)
+.+|.
T Consensus 193 i~~p~ 197 (272)
T 1d2n_A 193 IHVPN 197 (272)
T ss_dssp EECCC
T ss_pred EcCCC
Confidence 66665
No 48
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.94 E-value=9.3e-11 Score=122.37 Aligned_cols=138 Identities=14% Similarity=0.204 Sum_probs=88.3
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEcc
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLGD 286 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfIDE 286 (796)
+++++|+||||||||++++.++.+.. ..++.++...+...+.|+.+.+++.+++.+.. ..+.||||||
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~----------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~vl~iDE 111 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAH----------VPFFSMGGSSFIEMFVGLGASRVRDLFETAKK--QAPSIIFIDE 111 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHT----------CCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHH--SCSCEEEESC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC----------CCEEEechHHHHHhhcchHHHHHHHHHHHHHh--cCCeEEEEeC
Confidence 57899999999999999999999762 35667777777666666666677788888776 4678999999
Q ss_pred hhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC----CCCcEEEEEecChHHHHHhhhcCccccc--cccc
Q 003769 287 LKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG----ESERVWIMGIASFQTYTRCKAGHPSLEN--MWKL 360 (796)
Q Consensus 287 lh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~----~~G~l~~IGatT~~ey~k~~~~dpaLer--rf~l 360 (796)
++.+...+.. |+... ++.. .... +..|+..+. ..+.+.+|++|+... ..||++-| ||.
T Consensus 112 id~l~~~~~~--~~~~~-~~~~---~~~~----~~~ll~~l~~~~~~~~~v~vi~ttn~~~-----~ld~~l~r~~Rf~- 175 (268)
T 2r62_A 112 IDAIGKSRAA--GGVVS-GNDE---REQT----LNQLLAEMDGFGSENAPVIVLAATNRPE-----ILDPALMRPGRFD- 175 (268)
T ss_dssp GGGTTC-------------CCC---SCSS----TTTTTTTTTCSSCSCSCCEEEECBSCCT-----TSCGGGGSSSSSC-
T ss_pred hhhhcccccc--cccCC-Cchh---HHHH----HHHHHHHhhCcccCCCCEEEEEecCCch-----hcCHhHcCCCCCC-
Confidence 9999876421 10000 0000 0001 223433222 134589999998753 36889988 664
Q ss_pred eecccCCCCccc
Q 003769 361 HPFTIPVGSLSL 372 (796)
Q Consensus 361 q~V~vp~~~l~~ 372 (796)
..+.+|.|+...
T Consensus 176 ~~i~i~~p~~~~ 187 (268)
T 2r62_A 176 RQVLVDKPDFNG 187 (268)
T ss_dssp CCCBCCCCCTTT
T ss_pred eEEEecCcCHHH
Confidence 345666555443
No 49
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.92 E-value=1.1e-09 Score=118.53 Aligned_cols=152 Identities=7% Similarity=0.079 Sum_probs=98.9
Q ss_pred ChHHHHHHHHHHhh-----ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeeccccccc----------
Q 003769 192 DSDDVMSVLNALIN-----KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQ---------- 256 (796)
Q Consensus 192 r~~ei~~vi~~L~r-----~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~---------- 256 (796)
||+|+..+...|.. +.+|++|+||||||||++|+.++..+....--..+....++.++...+...
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~ 104 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFA 104 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHH
Confidence 99999999888764 677899999999999999999999986431112233567888885443221
Q ss_pred ------chHHHHHHHHHHHHHHH-hccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC-
Q 003769 257 ------SKGEVEQKLVELSCHVK-SYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG- 328 (796)
Q Consensus 257 ------~rge~E~rl~~l~~~v~-~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~- 328 (796)
..++..+.|.++++.+. .. +.++|+||||+|.|... +. |-.|+.+..
T Consensus 105 L~g~~~~~~~~~~~L~~~f~~~~~~~-~~~~ii~lDE~d~l~~q--------------------~~----L~~l~~~~~~ 159 (318)
T 3te6_A 105 ISKENLCGDISLEALNFYITNVPKAK-KRKTLILIQNPENLLSE--------------------KI----LQYFEKWISS 159 (318)
T ss_dssp HSCCC--CCCCHHHHHHHHHHSCGGG-SCEEEEEEECCSSSCCT--------------------HH----HHHHHHHHHC
T ss_pred hcCCCCCchHHHHHHHHHHHHhhhcc-CCceEEEEecHHHhhcc--------------------hH----HHHHHhcccc
Confidence 12334566777777652 22 56799999999999721 11 333432211
Q ss_pred CCCcEEEEEecChHHHHHhhhcCccccccccceecccCCCC
Q 003769 329 ESERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTIPVGS 369 (796)
Q Consensus 329 ~~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp~~~ 369 (796)
..+++.+||.++.-++.. ...++++.+||..+.+..|.-+
T Consensus 160 ~~s~~~vI~i~n~~d~~~-~~L~~~v~SR~~~~~i~F~pYt 199 (318)
T 3te6_A 160 KNSKLSIICVGGHNVTIR-EQINIMPSLKAHFTEIKLNKVD 199 (318)
T ss_dssp SSCCEEEEEECCSSCCCH-HHHHTCHHHHTTEEEEECCCCC
T ss_pred cCCcEEEEEEecCcccch-hhcchhhhccCCceEEEeCCCC
Confidence 367888888865422211 2346778888876667776543
No 50
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.92 E-value=1.6e-09 Score=124.21 Aligned_cols=144 Identities=15% Similarity=0.169 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCC
Q 003769 565 DENLKVLSDALERKAVVPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSS 644 (796)
Q Consensus 565 ~e~L~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms 644 (796)
.+.+..|.+.|.+. |+||++++..+..++.. .+.+||.||+| +|||.+|++||..+ +.. ..|..+...
T Consensus 10 ~~~~~~l~~~l~~~--ivGq~~~i~~l~~al~~------~~~VLL~GpPG--tGKT~LAraLa~~l-~~~-~~f~~~~~~ 77 (500)
T 3nbx_X 10 AERISRLSSSLEKG--LYERSHAIRLCLLAALS------GESVFLLGPPG--IAKSLIARRLKFAF-QNA-RAFEYLMTR 77 (500)
T ss_dssp HHHHHHHHHHHHTT--CSSCHHHHHHHHHHHHH------TCEEEEECCSS--SSHHHHHHHGGGGB-SSC-CEEEEECCT
T ss_pred HHHHHHHHHHHHhh--hHHHHHHHHHHHHHHhc------CCeeEeecCch--HHHHHHHHHHHHHH-hhh-hHHHHHHHh
Confidence 46788999999999 99999999887766652 24789999999 99999999999987 333 445555543
Q ss_pred CCccccccccccCCCCCCCCCCc--hhhHHHHHHhC---CCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCcee
Q 003769 645 QSRQDDCRTKKRSRDVELGCCSY--IERLGLALNEN---PHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIV 719 (796)
Q Consensus 645 ~~~~~~~~~~k~~~~~~~~~~~~--~~~L~eavr~~---P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v 719 (796)
-...++ +.|.. .+... .+.+.. ..+. ...|+|||||+++ .+ .+++.|+++|++|.++. .|...
T Consensus 78 ~~t~~d-----L~G~~--~~~~~~~~g~~~~-~~~g~l~~~~IL~IDEI~r~--~~-~~q~~LL~~lee~~v~i-~G~~~ 145 (500)
T 3nbx_X 78 FSTPEE-----VFGPL--SIQALKDEGRYER-LTSGYLPEAEIVFLDEIWKA--GP-AILNTLLTAINERQFRN-GAHVE 145 (500)
T ss_dssp TCCHHH-----HHCCB--C----------CB-CCTTSGGGCSEEEEESGGGC--CH-HHHHHHHHHHHSSEEEC-SSSEE
T ss_pred cCCHHH-----hcCcc--cHHHHhhchhHHh-hhccCCCcceeeeHHhHhhh--cH-HHHHHHHHHHHHHhccC-CCCcC
Confidence 111111 11100 00000 001100 0111 1469999999999 99 99999999999999997 56677
Q ss_pred cCCcEEEEeeCCC
Q 003769 720 PLKDSIIIFSCDS 732 (796)
Q Consensus 720 ~~~n~IiilTsn~ 732 (796)
.+..-++|+|||.
T Consensus 146 ~~~~~~iI~ATN~ 158 (500)
T 3nbx_X 146 KIPMRLLVAASNE 158 (500)
T ss_dssp ECCCCEEEEEESS
T ss_pred Ccchhhhhhcccc
Confidence 7777778898883
No 51
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.91 E-value=2.3e-09 Score=115.16 Aligned_cols=139 Identities=15% Similarity=0.136 Sum_probs=98.3
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCC-
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD- 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~- 659 (796)
++|+..++..+.+.+.+.- +....+||.||+| +|||.+|++|+....... ..|+.++++... +....+.+.|.
T Consensus 4 iig~s~~~~~~~~~~~~~a--~~~~~vLi~Ge~G--tGKt~lAr~i~~~~~~~~-~~~v~v~~~~~~-~~l~~~~lfg~~ 77 (304)
T 1ojl_A 4 MIGSSPAMQHLLNEIAMVA--PSDATVLIHGDSG--TGKELVARALHACSARSD-RPLVTLNCAALN-ESLLESELFGHE 77 (304)
T ss_dssp CCCCSHHHHHHHHHHHHHC--STTSCEEEESCTT--SCHHHHHHHHHHHSSCSS-SCCCEEECSSCC-HHHHHHHHTCCC
T ss_pred cEECCHHHHHHHHHHHHHh--CCCCcEEEECCCC--chHHHHHHHHHHhCcccC-CCeEEEeCCCCC-hHHHHHHhcCcc
Confidence 8999999999988887653 3445789999999 999999999999886666 789999998652 21111122221
Q ss_pred C-CCCCC--CchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 660 V-ELGCC--SYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 660 ~-~~~~~--~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
. .|.|. ...+.+..+ ...++|||||+.. .+ +++..|+++++++.++.-.|...--.|..||+|||.
T Consensus 78 ~g~~tg~~~~~~g~~~~a----~~g~L~LDEi~~l--~~-~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~ 146 (304)
T 1ojl_A 78 KGAFTGADKRREGRFVEA----DGGTLFLDEIGDI--SP-LMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHR 146 (304)
T ss_dssp SSCCC---CCCCCHHHHH----TTSEEEEESCTTC--CH-HHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESS
T ss_pred ccccCchhhhhcCHHHhc----CCCEEEEeccccC--CH-HHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCc
Confidence 1 12222 112333322 3479999999999 99 999999999999998754444333456788998884
No 52
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.90 E-value=4.9e-09 Score=120.09 Aligned_cols=137 Identities=14% Similarity=0.169 Sum_probs=93.0
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEcc
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLGD 286 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfIDE 286 (796)
+++++|+||||||||++++.|+..+ +..++.++...+...+.|+.+.++..+++.++. ..+.|+||||
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~----------~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~--~~p~il~IDE 131 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITASGSDFVEMFVGVGAARVRDLFETAKR--HAPCIVFIDE 131 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT----------TCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSS--SSSCEEEEEC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHh--cCCCEEEEeh
Confidence 4568999999999999999999865 246899999888888999999999998887654 3578999999
Q ss_pred hhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC--C-CCcEEEEEecChHHHHHhhhcCccccc--cccce
Q 003769 287 LKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG--E-SERVWIMGIASFQTYTRCKAGHPSLEN--MWKLH 361 (796)
Q Consensus 287 lh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~--~-~G~l~~IGatT~~ey~k~~~~dpaLer--rf~lq 361 (796)
++.+...+.. + ..+ ........ +..|+..++ . ...+.+|++|+.... .||+|-| ||+.
T Consensus 132 Id~l~~~r~~--~-~~~-----~~~e~~~~---l~~LL~~Ldg~~~~~~viviAatn~p~~-----LD~aLlr~gRfdr- 194 (499)
T 2dhr_A 132 IDAVGRKRGS--G-VGG-----GNDEREQT---LNQLLVEMDGFEKDTAIVVMAATNRPDI-----LDPALLRPGRFDR- 194 (499)
T ss_dssp GGGTCCCSSS--S-TTT-----SSHHHHHH---HHHHHHHGGGCCSSCCCEEEECCSCGGG-----SCTTTSSTTSSCC-
T ss_pred HHHHHHhhcc--C-cCC-----CcHHHHHH---HHHHHHHhcccccCccEEEEEecCChhh-----cCcccccccccce-
Confidence 9998765321 0 000 00011111 334443332 2 334677777776532 7999998 6653
Q ss_pred ecccCCCCccc
Q 003769 362 PFTIPVGSLSL 372 (796)
Q Consensus 362 ~V~vp~~~l~~ 372 (796)
.|.++.|++..
T Consensus 195 ~i~i~~Pd~~~ 205 (499)
T 2dhr_A 195 QIAIDAPDVKG 205 (499)
T ss_dssp EEECCCCCHHH
T ss_pred EEecCCCCHHH
Confidence 55565555543
No 53
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.89 E-value=1.9e-10 Score=139.11 Aligned_cols=137 Identities=17% Similarity=0.196 Sum_probs=98.0
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
...+++|+||||||||++++.+|..+ +..++.++.+.+..+|.|+.+.+++.+++.++. ..++|||||
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~----------~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~--~~p~vl~iD 577 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISIKGPELLTMWFGESEANVREIFDKARQ--AAPCVLFFD 577 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHH----------TCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHH--HCSBCCCCS
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHh----------CCCEEEEechHhhhhhcCccHHHHHHHHHHHHh--cCCeEEEEE
Confidence 45679999999999999999999976 245788888889899999999999999999987 367899999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC---CCCcEEEEEecChHHHHHhhhcCccccc--cccc
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG---ESERVWIMGIASFQTYTRCKAGHPSLEN--MWKL 360 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~---~~G~l~~IGatT~~ey~k~~~~dpaLer--rf~l 360 (796)
|++.+...+. ++... ......--+..|+..++ ....+.+|+||+..+ ..||||-| ||+
T Consensus 578 Eid~l~~~r~---~~~~~--------~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~-----~ld~allrpgRf~- 640 (806)
T 1ypw_A 578 ELDSIAKARG---GNIGD--------GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD-----IIDPAILRPGRLD- 640 (806)
T ss_dssp SHHHHCCTTT---TCCSH--------HHHHHHHHHHHHHTTCC------CCBCCCCCBSCG-----GGSCTTSSGGGTT-
T ss_pred Chhhhhhhcc---CCCCC--------cchhHHHHHHHHHHHHhcccccCCeEEEEecCCcc-----cCCHHHhCccccC-
Confidence 9999988752 11110 11111111335665543 345688999998543 37999999 986
Q ss_pred eecccCCCCcc
Q 003769 361 HPFTIPVGSLS 371 (796)
Q Consensus 361 q~V~vp~~~l~ 371 (796)
..|.+|.|+..
T Consensus 641 ~~i~~~~p~~~ 651 (806)
T 1ypw_A 641 QLIYIPLPDEK 651 (806)
T ss_dssp SCCCCCCCCCS
T ss_pred ceeecCCCCHH
Confidence 34555554433
No 54
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.87 E-value=8.9e-09 Score=108.72 Aligned_cols=139 Identities=13% Similarity=0.147 Sum_probs=85.8
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc-cchHH-HHHHHHHHHHHH----HhccCCC
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN-QSKGE-VEQKLVELSCHV----KSYMGRG 279 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a-~~rge-~E~rl~~l~~~v----~~~~~~~ 279 (796)
..++++|+||||||||++++.++..+ +..++.++.+.+.. .|.|. .+..+++++... ... ..+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l----------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 117 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA----------NAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAV-EQN 117 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH----------TCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHH-HHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhc-cCC
Confidence 46789999999999999999999976 34688899887765 45443 344566665522 211 236
Q ss_pred EEEEEcchhhhhhhhcccCCCCccccCCCcchhHHH--HHHHHHHHhhhcC--------CCCcEEEEEecChHHHHHhhh
Q 003769 280 IVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEY--VVMEIKRLVFEIG--------ESERVWIMGIASFQTYTRCKA 349 (796)
Q Consensus 280 ~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~--~~~eLk~L~~~~~--------~~G~l~~IGatT~~ey~k~~~ 349 (796)
.||||||++.+..... ..+ +..... .+. |..++.+.. ..+.+.+|++++++... -..
T Consensus 118 ~vl~iDEi~~l~~~~~-----~~~------~~~~~~~~~~~-Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~ 184 (310)
T 1ofh_A 118 GIVFIDEIDKICKKGE-----YSG------ADVSREGVQRD-LLPLVEGSTVSTKHGMVKTDHILFIASGAFQVAR-PSD 184 (310)
T ss_dssp CEEEEECGGGGSCCSS-----CCS------SHHHHHHHHHH-HHHHHHCCEEEETTEEEECTTCEEEEEECCSSSC-GGG
T ss_pred CEEEEEChhhcCcccc-----ccc------cchhHHHHHHH-HHHHhcCCeEecccccccCCcEEEEEcCCcccCC-ccc
Confidence 7999999999976521 111 112211 122 444442100 01368899987432111 125
Q ss_pred cCccccccccceecccCCCC
Q 003769 350 GHPSLENMWKLHPFTIPVGS 369 (796)
Q Consensus 350 ~dpaLerrf~lq~V~vp~~~ 369 (796)
.+|+|-+||. ..|.+|.++
T Consensus 185 l~~~l~~R~~-~~i~~~~~~ 203 (310)
T 1ofh_A 185 LIPELQGRLP-IRVELTALS 203 (310)
T ss_dssp SCHHHHHTCC-EEEECCCCC
T ss_pred CCHHHHhhCC-ceEEcCCcC
Confidence 7899999986 456666644
No 55
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.85 E-value=5.7e-09 Score=118.11 Aligned_cols=122 Identities=9% Similarity=0.086 Sum_probs=80.4
Q ss_pred HHHHHHHhh-ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhc
Q 003769 197 MSVLNALIN-KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSY 275 (796)
Q Consensus 197 ~~vi~~L~r-~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~ 275 (796)
..+...+.. +..+++|+||||||||++++.|+..+ +..++.++... ...+++.+.+.........
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~----------~~~f~~l~a~~---~~~~~ir~~~~~a~~~~~~- 104 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA----------NADVERISAVT---SGVKEIREAIERARQNRNA- 104 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT----------TCEEEEEETTT---CCHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh----------CCCeEEEEecc---CCHHHHHHHHHHHHHhhhc-
Confidence 344555555 66789999999999999999999875 35788877532 2233333333333332222
Q ss_pred cCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCcccc
Q 003769 276 MGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLE 355 (796)
Q Consensus 276 ~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLe 355 (796)
+.+.||||||+|.+.... .+. |.+.+ +.|.+++||+||.+.+ ...+++|-
T Consensus 105 -~~~~iLfIDEI~~l~~~~------------------q~~----LL~~l----e~~~v~lI~att~n~~---~~l~~aL~ 154 (447)
T 3pvs_A 105 -GRRTILFVDEVHRFNKSQ------------------QDA----FLPHI----EDGTITFIGATTENPS---FELNSALL 154 (447)
T ss_dssp -TCCEEEEEETTTCC------------------------C----CHHHH----HTTSCEEEEEESSCGG---GSSCHHHH
T ss_pred -CCCcEEEEeChhhhCHHH------------------HHH----HHHHH----hcCceEEEecCCCCcc---cccCHHHh
Confidence 568999999999986541 111 33444 3789999999998776 36789999
Q ss_pred cccccee
Q 003769 356 NMWKLHP 362 (796)
Q Consensus 356 rrf~lq~ 362 (796)
+|+....
T Consensus 155 sR~~v~~ 161 (447)
T 3pvs_A 155 SRARVYL 161 (447)
T ss_dssp TTEEEEE
T ss_pred CceeEEe
Confidence 9975433
No 56
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.85 E-value=1.4e-08 Score=109.51 Aligned_cols=124 Identities=15% Similarity=0.182 Sum_probs=95.9
Q ss_pred CCCcchHHHHHHHHHHHhhc-cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCC
Q 003769 581 VPWQKEIMPEIARTILECRS-KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs-~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~ 659 (796)
++||++++..+...+...+. .++...+||.||+| +|||.+|+++|+.+ + ..|+.++.+...
T Consensus 31 iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~G--tGKT~la~~ia~~~-~---~~~~~~~~~~~~------------ 92 (338)
T 3pfi_A 31 YIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAG--LGKTTLANIISYEM-S---ANIKTTAAPMIE------------ 92 (338)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTT--SSHHHHHHHHHHHT-T---CCEEEEEGGGCC------------
T ss_pred hCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCC--CCHHHHHHHHHHHh-C---CCeEEecchhcc------------
Confidence 89999999999999987765 55666789999999 99999999999986 3 347887765321
Q ss_pred CCCCCCCchhhHHHHHHh-CCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecC-------CCceecCCcEEEEeeCC
Q 003769 660 VELGCCSYIERLGLALNE-NPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALA-------DGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 660 ~~~~~~~~~~~L~eavr~-~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~-------~G~~v~~~n~IiilTsn 731 (796)
..+.+...+.. ....||+||||++. .+ .+++.|+++++++.++-- ....+++.+.+||.+||
T Consensus 93 -------~~~~~~~~~~~~~~~~vl~lDEi~~l--~~-~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn 162 (338)
T 3pfi_A 93 -------KSGDLAAILTNLSEGDILFIDEIHRL--SP-AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATT 162 (338)
T ss_dssp -------SHHHHHHHHHTCCTTCEEEEETGGGC--CH-HHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEES
T ss_pred -------chhHHHHHHHhccCCCEEEEechhhc--CH-HHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCC
Confidence 12345555554 56789999999999 99 999999999999986421 22345566789999998
Q ss_pred C
Q 003769 732 S 732 (796)
Q Consensus 732 ~ 732 (796)
.
T Consensus 163 ~ 163 (338)
T 3pfi_A 163 R 163 (338)
T ss_dssp C
T ss_pred C
Confidence 5
No 57
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.84 E-value=8.8e-09 Score=111.76 Aligned_cols=154 Identities=12% Similarity=0.096 Sum_probs=96.9
Q ss_pred ChHHHHHHHHHHhh-----ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeeccccccc----------
Q 003769 192 DSDDVMSVLNALIN-----KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQ---------- 256 (796)
Q Consensus 192 r~~ei~~vi~~L~r-----~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~---------- 256 (796)
|++++..+.+.|.+ ..++++|+||||+|||++++.++..+.... +..-.+..++.++.......
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 102 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARA-SSLGVLVKPIYVNARHRETPYRVASAIAEA 102 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHH-HHHTCCEEEEEEETTTSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHH-hccCCCeEEEEEECCcCCCHHHHHHHHHHH
Confidence 99999999998832 567899999999999999999999875310 00001467888886543220
Q ss_pred ------chHH-HHHHHHHHHHHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCC
Q 003769 257 ------SKGE-VEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGE 329 (796)
Q Consensus 257 ------~rge-~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~ 329 (796)
..|. ..+-+..+.+.+... ++++||||||+|++...+ . ..+. |..|+..+..
T Consensus 103 l~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~vlilDEi~~l~~~~-------~---------~~~~----l~~l~~~~~~ 161 (387)
T 2v1u_A 103 VGVRVPFTGLSVGEVYERLVKRLSRL-RGIYIIVLDEIDFLPKRP-------G---------GQDL----LYRITRINQE 161 (387)
T ss_dssp HSCCCCSSCCCHHHHHHHHHHHHTTS-CSEEEEEEETTTHHHHST-------T---------HHHH----HHHHHHGGGC
T ss_pred hCCCCCCCCCCHHHHHHHHHHHHhcc-CCeEEEEEccHhhhcccC-------C---------CChH----HHhHhhchhh
Confidence 0111 223344555555443 568999999999997641 0 1111 3344433221
Q ss_pred ---CCcEEEEEecChHHHHHhhhcCccccccccceecccCCCC
Q 003769 330 ---SERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTIPVGS 369 (796)
Q Consensus 330 ---~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp~~~ 369 (796)
.+.+.+|++|+...+.. ..++++-+||..+.+.+|..+
T Consensus 162 ~~~~~~~~~I~~t~~~~~~~--~l~~~l~~r~~~~~i~l~~l~ 202 (387)
T 2v1u_A 162 LGDRVWVSLVGITNSLGFVE--NLEPRVKSSLGEVELVFPPYT 202 (387)
T ss_dssp C-----CEEEEECSCSTTSS--SSCHHHHTTTTSEECCBCCCC
T ss_pred cCCCceEEEEEEECCCchHh--hhCHHHHhcCCCeEEeeCCCC
Confidence 46789999998775543 347888888765667776644
No 58
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.84 E-value=2.6e-09 Score=120.93 Aligned_cols=79 Identities=11% Similarity=0.080 Sum_probs=66.7
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHH---HhccCCCEEE
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHV---KSYMGRGIVL 282 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v---~~~~~~~~IL 282 (796)
.+++++|+||||||||++++++|..+.. +..|+.++.+.+..+|.|+.+. +.++++.+ +. ..++||
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~~~~--~~~~il 130 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGS--------KVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIGLRI--KETKEV 130 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCT--------TSCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEEEEE--EEEEEE
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCC--------CceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHhhhh--cCCcEE
Confidence 3468999999999999999999998632 2689999999999999999997 99998887 44 468999
Q ss_pred EEcchhhhhhhhc
Q 003769 283 YLGDLKWVAEFWA 295 (796)
Q Consensus 283 fIDElh~l~~~~~ 295 (796)
||||++.+++.+.
T Consensus 131 ~iDEid~l~~~r~ 143 (456)
T 2c9o_A 131 YEGEVTELTPCET 143 (456)
T ss_dssp EEEEEEEEEEC--
T ss_pred EEechhhcccccC
Confidence 9999999998763
No 59
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.82 E-value=1.4e-08 Score=114.51 Aligned_cols=69 Identities=20% Similarity=0.357 Sum_probs=56.2
Q ss_pred HHHHHHhhcCCCCCCcchHHHHHHHHHHHh--hc--------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCce
Q 003769 569 KVLSDALERKAVVPWQKEIMPEIARTILEC--RS--------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNF 638 (796)
Q Consensus 569 ~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~--rs--------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~ 638 (796)
+.+.+.|.+. |+||++|...|..++... |. ..+..-+||.||+| +|||.+|++||+.+ + ..|
T Consensus 7 ~~i~~~Ld~~--IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppG--tGKT~lar~lA~~l-~---~~~ 78 (444)
T 1g41_A 7 REIVSELDQH--IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTG--VGKTEIARRLAKLA-N---APF 78 (444)
T ss_dssp HHHHHHHHTT--CCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTT--SSHHHHHHHHHHHT-T---CCE
T ss_pred HHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCC--CCHHHHHHHHHHHc-C---CCc
Confidence 4578899999 999999999999998543 11 12445688999999 99999999999998 3 458
Q ss_pred EEecCCC
Q 003769 639 TNLSSSQ 645 (796)
Q Consensus 639 i~~dms~ 645 (796)
+.+|++.
T Consensus 79 ~~v~~~~ 85 (444)
T 1g41_A 79 IKVEATK 85 (444)
T ss_dssp EEEEGGG
T ss_pred eeecchh
Confidence 9999864
No 60
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.81 E-value=4.4e-09 Score=100.29 Aligned_cols=133 Identities=11% Similarity=0.039 Sum_probs=82.2
Q ss_pred ChHHHHHHHHHHhh---ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHH
Q 003769 192 DSDDVMSVLNALIN---KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVEL 268 (796)
Q Consensus 192 r~~ei~~vi~~L~r---~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l 268 (796)
+++.++++.+.+.+ ...+++|+||||||||++++.++...... +..|+ ++.+.+... ..+..+
T Consensus 6 ~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~-------~~~~v-~~~~~~~~~------~~~~~~ 71 (145)
T 3n70_A 6 RSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNA-------QGEFV-YRELTPDNA------PQLNDF 71 (145)
T ss_dssp SSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTT-------TSCCE-EEECCTTTS------SCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCcc-------CCCEE-EECCCCCcc------hhhhcH
Confidence 45666777776654 67789999999999999999998754332 45677 887766553 112223
Q ss_pred HHHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHH--H
Q 003769 269 SCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYT--R 346 (796)
Q Consensus 269 ~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~--k 346 (796)
++.. .+.+|||||++.+-... ... |-.++.. ...++++|++|+.+... .
T Consensus 72 ~~~a-----~~g~l~ldei~~l~~~~------------------q~~----Ll~~l~~--~~~~~~~I~~t~~~~~~~~~ 122 (145)
T 3n70_A 72 IALA-----QGGTLVLSHPEHLTREQ------------------QYH----LVQLQSQ--EHRPFRLIGIGDTSLVELAA 122 (145)
T ss_dssp HHHH-----TTSCEEEECGGGSCHHH------------------HHH----HHHHHHS--SSCSSCEEEEESSCHHHHHH
T ss_pred HHHc-----CCcEEEEcChHHCCHHH------------------HHH----HHHHHhh--cCCCEEEEEECCcCHHHHHH
Confidence 3322 23589999999886531 111 2223321 25568999999864332 2
Q ss_pred hhhcCccccccccceecccCC
Q 003769 347 CKAGHPSLENMWKLHPFTIPV 367 (796)
Q Consensus 347 ~~~~dpaLerrf~lq~V~vp~ 367 (796)
--.-++.|-.|+....|.+|+
T Consensus 123 ~~~~~~~L~~rl~~~~i~lPp 143 (145)
T 3n70_A 123 SNHIIAELYYCFAMTQIACLP 143 (145)
T ss_dssp HSCCCHHHHHHHHHHEEECCC
T ss_pred cCCCCHHHHHHhcCCEEeCCC
Confidence 222345565665555666664
No 61
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.81 E-value=9.6e-09 Score=97.94 Aligned_cols=112 Identities=14% Similarity=0.087 Sum_probs=82.3
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDV 660 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~ 660 (796)
++|+..++..+.+.+.+.- +...++||.||+| +|||.+|++|+....... ..|+ ++++... +.
T Consensus 3 iiG~s~~~~~~~~~~~~~a--~~~~~vll~G~~G--tGKt~lA~~i~~~~~~~~-~~~v-~~~~~~~-~~---------- 65 (145)
T 3n70_A 3 LIGRSEWINQYRRRLQQLS--ETDIAVWLYGAPG--TGRMTGARYLHQFGRNAQ-GEFV-YRELTPD-NA---------- 65 (145)
T ss_dssp -CCSSHHHHHHHHHHHHHT--TCCSCEEEESSTT--SSHHHHHHHHHHSSTTTT-SCCE-EEECCTT-TS----------
T ss_pred ceeCCHHHHHHHHHHHHHh--CCCCCEEEECCCC--CCHHHHHHHHHHhCCccC-CCEE-EECCCCC-cc----------
Confidence 7999999999998887653 3345789999999 999999999999876666 7799 9998542 11
Q ss_pred CCCCCCchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCC
Q 003769 661 ELGCCSYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 661 ~~~~~~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn 731 (796)
....+.+..+ ...+++||||+.. .+ +++..|++++.. +.. +..||+|||
T Consensus 66 ----~~~~~~~~~a----~~g~l~ldei~~l--~~-~~q~~Ll~~l~~--------~~~---~~~~I~~t~ 114 (145)
T 3n70_A 66 ----PQLNDFIALA----QGGTLVLSHPEHL--TR-EQQYHLVQLQSQ--------EHR---PFRLIGIGD 114 (145)
T ss_dssp ----SCHHHHHHHH----TTSCEEEECGGGS--CH-HHHHHHHHHHHS--------SSC---SSCEEEEES
T ss_pred ----hhhhcHHHHc----CCcEEEEcChHHC--CH-HHHHHHHHHHhh--------cCC---CEEEEEECC
Confidence 0111222222 3468999999999 99 999999999922 122 345788887
No 62
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.80 E-value=3.4e-08 Score=102.24 Aligned_cols=136 Identities=15% Similarity=0.222 Sum_probs=85.6
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEcc
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLGD 286 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfIDE 286 (796)
+++++|+||||+|||++++.++..+. ..++.++...+...+.++.+.++..+++.... ..+.++||||
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~~----------~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~i~~~De 116 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEAR----------VPFITASGSDFVEMFVGVGAARVRDLFETAKR--HAPCIVFIDE 116 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHTT----------CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTT--SSSEEEEEET
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC----------CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHh--cCCeEEEehh
Confidence 45689999999999999999998752 35777887777667788888899999988764 3578999999
Q ss_pred hhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhc-C-CCCc-EEEEEecChHHHHHhhhcCccccc--cccce
Q 003769 287 LKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEI-G-ESER-VWIMGIASFQTYTRCKAGHPSLEN--MWKLH 361 (796)
Q Consensus 287 lh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~-~-~~G~-l~~IGatT~~ey~k~~~~dpaLer--rf~lq 361 (796)
++.+...+.. + ..+ .. ...... +..++..+ | .+.+ +.++++|+..+ ..||+|-| ||+.
T Consensus 117 id~l~~~~~~--~-~~~----~~-~~~~~~---~~~ll~~l~g~~~~~~~i~~a~t~~p~-----~ld~~l~r~~rf~~- 179 (254)
T 1ixz_A 117 IDAVGRKRGS--G-VGG----GN-DEREQT---LNQLLVEMDGFEKDTAIVVMAATNRPD-----ILDPALLRPGRFDR- 179 (254)
T ss_dssp HHHHHC----------------C-HHHHHH---HHHHHHHHHTCCTTCCEEEEEEESCGG-----GSCGGGGSTTSSCE-
T ss_pred hhhhhcccCc--c-ccc----cc-hHHHHH---HHHHHHHHhCCCCCCCEEEEEccCCch-----hCCHHHcCCCcCCe-
Confidence 9998765321 0 000 00 011111 22333222 1 2333 55555555432 37899998 6653
Q ss_pred ecccCCCCcc
Q 003769 362 PFTIPVGSLS 371 (796)
Q Consensus 362 ~V~vp~~~l~ 371 (796)
.+.+|.|+..
T Consensus 180 ~i~i~~p~~~ 189 (254)
T 1ixz_A 180 QIAIDAPDVK 189 (254)
T ss_dssp EEECCSCCHH
T ss_pred EEeeCCcCHH
Confidence 4556555544
No 63
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.77 E-value=8.5e-09 Score=111.03 Aligned_cols=140 Identities=13% Similarity=0.198 Sum_probs=97.7
Q ss_pred HHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCC
Q 003769 566 ENLKVLSDALERKAVVPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQ 645 (796)
Q Consensus 566 e~L~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~ 645 (796)
+.+..+...+... |+||++++..+..++.. ...+||.||+| +|||.+|++||..+ + ..+++++++.
T Consensus 16 ~~~~~~~~~~~~~--i~g~~~~~~~l~~~l~~------~~~vll~G~pG--tGKT~la~~la~~~-~---~~~~~i~~~~ 81 (331)
T 2r44_A 16 NKIKEVIDEVGKV--VVGQKYMINRLLIGICT------GGHILLEGVPG--LAKTLSVNTLAKTM-D---LDFHRIQFTP 81 (331)
T ss_dssp HHHHHHHHHHTTT--CCSCHHHHHHHHHHHHH------TCCEEEESCCC--HHHHHHHHHHHHHT-T---CCEEEEECCT
T ss_pred HHHHHHHHHhccc--eeCcHHHHHHHHHHHHc------CCeEEEECCCC--CcHHHHHHHHHHHh-C---CCeEEEecCC
Confidence 4566788889999 99999999888877764 24799999999 99999999999987 3 3478888753
Q ss_pred Ccc-ccccccccCCCCCCCCCCchhhHHHHHHhCC--CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCC
Q 003769 646 SRQ-DDCRTKKRSRDVELGCCSYIERLGLALNENP--HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLK 722 (796)
Q Consensus 646 ~~~-~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P--~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~ 722 (796)
... .+........ + . ...+. .+..| ..|+|||||+++ ++ .+++.|++++++|.++. .|....+.
T Consensus 82 ~~~~~~l~g~~~~~-~-~-~~~~~------~~~g~l~~~vl~iDEi~~~--~~-~~~~~Ll~~l~~~~~~~-~g~~~~~~ 148 (331)
T 2r44_A 82 DLLPSDLIGTMIYN-Q-H-KGNFE------VKKGPVFSNFILADEVNRS--PA-KVQSALLECMQEKQVTI-GDTTYPLD 148 (331)
T ss_dssp TCCHHHHHEEEEEE-T-T-TTEEE------EEECTTCSSEEEEETGGGS--CH-HHHHHHHHHHHHSEEEE-TTEEEECC
T ss_pred CCChhhcCCceeec-C-C-CCceE------eccCcccccEEEEEccccC--CH-HHHHHHHHHHhcCceee-CCEEEECC
Confidence 311 1110000000 0 0 00000 01111 379999999999 99 99999999999999987 46566555
Q ss_pred -cEEEEeeCCC
Q 003769 723 -DSIIIFSCDS 732 (796)
Q Consensus 723 -n~IiilTsn~ 732 (796)
+.+||.|+|.
T Consensus 149 ~~~~viat~np 159 (331)
T 2r44_A 149 NPFLVLATQNP 159 (331)
T ss_dssp SSCEEEEEECT
T ss_pred CCEEEEEecCC
Confidence 4677778874
No 64
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.75 E-value=3.8e-08 Score=106.54 Aligned_cols=151 Identities=15% Similarity=0.249 Sum_probs=94.7
Q ss_pred ChHHHHHHHHHHhh-----ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc-----------
Q 003769 192 DSDDVMSVLNALIN-----KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN----------- 255 (796)
Q Consensus 192 r~~ei~~vi~~L~r-----~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a----------- 255 (796)
|++++..+.+.|.+ ...+++|+||||+|||++++.++..+.... +. +..++.++......
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~-~~---~~~~~~i~~~~~~~~~~~~~~i~~~ 100 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF-LG---KFKHVYINTRQIDTPYRVLADLLES 100 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHT-CS---SCEEEEEEHHHHCSHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHh-cC---CceEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999988873 467899999999999999999999875321 00 45777777432211
Q ss_pred -----cchH-HHHHHHHHHHHHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCC
Q 003769 256 -----QSKG-EVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGE 329 (796)
Q Consensus 256 -----~~rg-e~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~ 329 (796)
...+ ...+.+..+.+.+... +.++||||||++++.... +.+ .+. . |..++... .
T Consensus 101 l~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~vlilDE~~~l~~~~-----~~~---------~l~---~-l~~~~~~~-~ 160 (386)
T 2qby_A 101 LDVKVPFTGLSIAELYRRLVKAVRDY-GSQVVIVLDEIDAFVKKY-----NDD---------ILY---K-LSRINSEV-N 160 (386)
T ss_dssp TSCCCCSSSCCHHHHHHHHHHHHHTC-CSCEEEEEETHHHHHHSS-----CST---------HHH---H-HHHHHHSC-C
T ss_pred hCCCCCCCCCCHHHHHHHHHHHHhcc-CCeEEEEEcChhhhhccC-----cCH---------HHH---H-Hhhchhhc-C
Confidence 0011 1333455555555543 458999999999998651 111 111 1 33333211 2
Q ss_pred CCcEEEEEecChHHHHHhhhcCccccccccceecccCCC
Q 003769 330 SERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTIPVG 368 (796)
Q Consensus 330 ~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp~~ 368 (796)
.+.+.+|++|+...+... .++.+.+||..+.+.+|..
T Consensus 161 ~~~~~~I~~~~~~~~~~~--~~~~~~~r~~~~~i~l~~l 197 (386)
T 2qby_A 161 KSKISFIGITNDVKFVDL--LDPRVKSSLSEEEIIFPPY 197 (386)
T ss_dssp C--EEEEEEESCGGGGGG--CTTHHHHTTTTEEEEECCC
T ss_pred CCeEEEEEEECCCChHhh--hCHHHhccCCCeeEEeCCC
Confidence 567999999987766543 4677777775456666653
No 65
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.73 E-value=7.1e-08 Score=102.84 Aligned_cols=124 Identities=18% Similarity=0.237 Sum_probs=93.5
Q ss_pred CCCcchHHHHHHHHHHHhhc-cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCC
Q 003769 581 VPWQKEIMPEIARTILECRS-KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs-~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~ 659 (796)
++||++++..+...+..... .++...+||.||+| +|||.+|+++++.+ + ..++.++++...
T Consensus 14 ~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~G--tGKT~la~~i~~~~-~---~~~~~~~~~~~~------------ 75 (324)
T 1hqc_A 14 YIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPG--LGKTTLAHVIAHEL-G---VNLRVTSGPAIE------------ 75 (324)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTT--CCCHHHHHHHHHHH-T---CCEEEECTTTCC------------
T ss_pred hhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCC--CCHHHHHHHHHHHh-C---CCEEEEeccccC------------
Confidence 79999999999988877654 44556789999999 99999999999987 3 347777765331
Q ss_pred CCCCCCCchhhHHHHHHh--CCCEEEEEcccccCCCChHHHHHHHHHHHHcceEec--CCC-----ceecCCcEEEEeeC
Q 003769 660 VELGCCSYIERLGLALNE--NPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIAL--ADG-----EIVPLKDSIIIFSC 730 (796)
Q Consensus 660 ~~~~~~~~~~~L~eavr~--~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d--~~G-----~~v~~~n~IiilTs 730 (796)
..+.+.+.+.. ....||+||||++. .+ ..++.|+++++++.+.- +.+ -..+..+.+||+|+
T Consensus 76 -------~~~~l~~~l~~~~~~~~~l~lDEi~~l--~~-~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t 145 (324)
T 1hqc_A 76 -------KPGDLAAILANSLEEGDILFIDEIHRL--SR-QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGAT 145 (324)
T ss_dssp -------SHHHHHHHHTTTCCTTCEEEETTTTSC--CH-HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEE
T ss_pred -------ChHHHHHHHHHhccCCCEEEEECCccc--cc-chHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeC
Confidence 11244555554 56679999999999 99 99999999999998652 111 12344578899988
Q ss_pred CC
Q 003769 731 DS 732 (796)
Q Consensus 731 n~ 732 (796)
|.
T Consensus 146 ~~ 147 (324)
T 1hqc_A 146 TR 147 (324)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 66
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.71 E-value=5.6e-08 Score=104.68 Aligned_cols=130 Identities=10% Similarity=0.096 Sum_probs=82.3
Q ss_pred ChHHHHHHHHHHhh------ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHH
Q 003769 192 DSDDVMSVLNALIN------KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKL 265 (796)
Q Consensus 192 r~~ei~~vi~~L~r------~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl 265 (796)
+++.++.+...+.. ..++++|+||||||||++++.++.+. +..|+.++...+. ..+++...+
T Consensus 34 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~----------~~~~~~~~~~~~~--~~~~~~~~~ 101 (338)
T 3pfi_A 34 QESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM----------SANIKTTAAPMIE--KSGDLAAIL 101 (338)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT----------TCCEEEEEGGGCC--SHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh----------CCCeEEecchhcc--chhHHHHHH
Confidence 66666666666653 23589999999999999999999874 3568888865543 233333222
Q ss_pred HHHHHHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC-----CC----------
Q 003769 266 VELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG-----ES---------- 330 (796)
Q Consensus 266 ~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~-----~~---------- 330 (796)
... ..+.+|||||++.+.... .+ . |..++.... ..
T Consensus 102 -------~~~-~~~~vl~lDEi~~l~~~~------------------~~---~-Ll~~l~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T 3pfi_A 102 -------TNL-SEGDILFIDEIHRLSPAI------------------EE---V-LYPAMEDYRLDIIIGSGPAAQTIKID 151 (338)
T ss_dssp -------HTC-CTTCEEEEETGGGCCHHH------------------HH---H-HHHHHHTSCC---------CCCCCCC
T ss_pred -------Hhc-cCCCEEEEechhhcCHHH------------------HH---H-HHHHHHhccchhhcccCccccceecC
Confidence 222 467899999999886441 11 1 333331100 00
Q ss_pred -CcEEEEEecChHHHHHhhhcCccccccccceecccCCCC
Q 003769 331 -ERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTIPVGS 369 (796)
Q Consensus 331 -G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp~~~ 369 (796)
..+++|++|+.... .+|+|-+||. ..+.+|.++
T Consensus 152 ~~~~~~i~atn~~~~-----l~~~L~~R~~-~~i~l~~~~ 185 (338)
T 3pfi_A 152 LPKFTLIGATTRAGM-----LSNPLRDRFG-MQFRLEFYK 185 (338)
T ss_dssp CCCCEEEEEESCGGG-----SCHHHHTTCS-EEEECCCCC
T ss_pred CCCeEEEEeCCCccc-----cCHHHHhhcC-EEeeCCCcC
Confidence 03789999997543 6788999873 355565543
No 67
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.70 E-value=1.3e-06 Score=116.31 Aligned_cols=107 Identities=11% Similarity=0.155 Sum_probs=75.8
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDV 660 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~ 660 (796)
++-=++|+..|++..+..| .|.|-.|+.|+.| .||+.|+|..| ++-|- .+..|.++..
T Consensus 1588 LVlF~dai~Hi~RI~Ril~--~p~G~~LLvGvgG--sGkqSltrLaa-~i~~~---~~fqi~~~~~-------------- 1645 (2695)
T 4akg_A 1588 MVIHESMVDHILRIDRALK--QVQGHMMLIGASR--TGKTILTRFVA-WLNGL---KIVQPKIHRH-------------- 1645 (2695)
T ss_dssp CCCCHHHHHHHHHHHHHHH--SSSEEEEEECTTT--SCHHHHHHHHH-HHTTC---EEECCCCCTT--------------
T ss_pred eeeHHHHHHHHHHHHHHHc--CCCCCEEEECCCC--CcHHHHHHHHH-HHhCC---eeEEEEeeCC--------------
Confidence 5566889988887655554 5789999999999 99999998655 55443 3666666521
Q ss_pred CCCCCCchh----hHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEec
Q 003769 661 ELGCCSYIE----RLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIAL 713 (796)
Q Consensus 661 ~~~~~~~~~----~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d 713 (796)
|.-..+-+ .+..|=-++...|+||+|-.=. +. .++..+-.++.+|.+-+
T Consensus 1646 -Y~~~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi~--~e-~FLE~IN~lL~sGEVP~ 1698 (2695)
T 4akg_A 1646 -SNLSDFDMILKKAISDCSLKESRTCLIIDESNIL--ET-AFLERMNTLLANADIPD 1698 (2695)
T ss_dssp -CCHHHHHHHHHHHHHHHHHSCCCEEEEEETTTCC--SH-HHHHHHHHHHHSSSCTT
T ss_pred -CCHHHHHHHHHHHHHHcCCCCCceEEEEeccccc--cH-HHHHHHHHHHccCCCCC
Confidence 11111112 3333435678889999999999 88 88888888888888754
No 68
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.70 E-value=9.5e-08 Score=94.51 Aligned_cols=138 Identities=8% Similarity=0.041 Sum_probs=86.4
Q ss_pred ChHHHHHHHHHHhh-ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHH
Q 003769 192 DSDDVMSVLNALIN-KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSC 270 (796)
Q Consensus 192 r~~ei~~vi~~L~r-~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~ 270 (796)
+++.+..+.+.+.+ ...+++|+||||+|||++++.++..+.... ....++.++.+.... ...+...+..+..
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 94 (226)
T 2chg_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-----WRDNFIEMNASDERG--IDVVRHKIKEFAR 94 (226)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-----GGGGEEEEETTCTTC--HHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccc-----cccceEEeccccccC--hHHHHHHHHHHhc
Confidence 88889998888887 666799999999999999999999875321 234567776543322 2223333332222
Q ss_pred HHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhc
Q 003769 271 HVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAG 350 (796)
Q Consensus 271 ~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~ 350 (796)
......+.+.||||||++++... ..+ . |..++... .....+|.+|+... ..
T Consensus 95 ~~~~~~~~~~vliiDe~~~l~~~------------------~~~---~-l~~~l~~~--~~~~~~i~~~~~~~-----~~ 145 (226)
T 2chg_A 95 TAPIGGAPFKIIFLDEADALTAD------------------AQA---A-LRRTMEMY--SKSCRFILSCNYVS-----RI 145 (226)
T ss_dssp SCCSTTCSCEEEEEETGGGSCHH------------------HHH---H-HHHHHHHT--TTTEEEEEEESCGG-----GS
T ss_pred ccCCCccCceEEEEeChhhcCHH------------------HHH---H-HHHHHHhc--CCCCeEEEEeCChh-----hc
Confidence 10000045799999999988653 111 1 44455321 45678888876531 34
Q ss_pred CccccccccceecccCC
Q 003769 351 HPSLENMWKLHPFTIPV 367 (796)
Q Consensus 351 dpaLerrf~lq~V~vp~ 367 (796)
+++|.+||. .+.+|.
T Consensus 146 ~~~l~~r~~--~i~~~~ 160 (226)
T 2chg_A 146 IEPIQSRCA--VFRFKP 160 (226)
T ss_dssp CHHHHTTSE--EEECCC
T ss_pred CHHHHHhCc--eeecCC
Confidence 788888864 455544
No 69
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.69 E-value=2.9e-08 Score=108.67 Aligned_cols=77 Identities=12% Similarity=0.141 Sum_probs=60.8
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc-cchHHH-HHHHHHHHHHH----HhccCCC
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN-QSKGEV-EQKLVELSCHV----KSYMGRG 279 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a-~~rge~-E~rl~~l~~~v----~~~~~~~ 279 (796)
.+.+++|+||||||||++++.||... +..|+.++.+.+.. .|.|+. +..+.+++... .. ..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~----------~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~ 117 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL----------DVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQK--AQR 117 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHH--HHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc----------CCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHh--cCC
Confidence 35789999999999999999999875 46799999888775 477774 66677777654 22 246
Q ss_pred EEEEEcchhhhhhhh
Q 003769 280 IVLYLGDLKWVAEFW 294 (796)
Q Consensus 280 ~ILfIDElh~l~~~~ 294 (796)
.||||||++.+...+
T Consensus 118 ~vl~lDEid~l~~~~ 132 (363)
T 3hws_A 118 GIVYIDQIDKISRKS 132 (363)
T ss_dssp CEEEEECHHHHCCCS
T ss_pred cEEEEeChhhhcccc
Confidence 799999999998764
No 70
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.68 E-value=1.5e-08 Score=96.37 Aligned_cols=109 Identities=16% Similarity=0.131 Sum_probs=80.8
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDV 660 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~ 660 (796)
++||++++..+.+.+.+.-. ...++||.||+| +|||.+|++|+.... .|+.+++++.. +..
T Consensus 6 ~iG~s~~~~~l~~~~~~~~~--~~~~vll~G~~G--tGKt~lA~~i~~~~~-----~~~~~~~~~~~-~~~--------- 66 (143)
T 3co5_A 6 KLGNSAAIQEMNREVEAAAK--RTSPVFLTGEAG--SPFETVARYFHKNGT-----PWVSPARVEYL-IDM--------- 66 (143)
T ss_dssp --CCCHHHHHHHHHHHHHHT--CSSCEEEEEETT--CCHHHHHGGGCCTTS-----CEECCSSTTHH-HHC---------
T ss_pred ceeCCHHHHHHHHHHHHHhC--CCCcEEEECCCC--ccHHHHHHHHHHhCC-----CeEEechhhCC-hHh---------
Confidence 79999999999988876532 234588999999 999999999987653 48888887541 110
Q ss_pred CCCCCCchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCC
Q 003769 661 ELGCCSYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 661 ~~~~~~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn 731 (796)
+...+..-...+++||||+.. .+ +.+..|+++++++. =.++.||+|||
T Consensus 67 ----------~~~~~~~a~~~~l~lDei~~l--~~-~~q~~Ll~~l~~~~----------~~~~~iI~~tn 114 (143)
T 3co5_A 67 ----------PMELLQKAEGGVLYVGDIAQY--SR-NIQTGITFIIGKAE----------RCRVRVIASCS 114 (143)
T ss_dssp ----------HHHHHHHTTTSEEEEEECTTC--CH-HHHHHHHHHHHHHT----------TTTCEEEEEEE
T ss_pred ----------hhhHHHhCCCCeEEEeChHHC--CH-HHHHHHHHHHHhCC----------CCCEEEEEecC
Confidence 122223334579999999999 99 99999999999974 24566888887
No 71
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.66 E-value=7.3e-09 Score=121.25 Aligned_cols=149 Identities=11% Similarity=0.120 Sum_probs=98.0
Q ss_pred HHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHhhc-------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCce
Q 003769 566 ENLKVLSDALERKAVVPWQKEIMPEIARTILECRS-------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNF 638 (796)
Q Consensus 566 e~L~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~rs-------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~ 638 (796)
+.+..|.+.|... |+||+++..+|.-++..... .+....+||.||+| +|||.||++||+.+... +
T Consensus 284 ~~~~~l~~~l~~~--I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppG--tGKT~LAr~la~~~~r~----~ 355 (595)
T 3f9v_A 284 WIRDRIISSIAPS--IYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPG--TAKSQMLQFISRVAPRA----V 355 (595)
T ss_dssp TGGGTHHHHTSST--TSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSC--CTHHHHHHSSSTTCSCE----E
T ss_pred HHHHHHHHhhcch--hcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCc--hHHHHHHHHHHHhCCCc----e
Confidence 4566788999999 99999988777555443311 12334799999999 99999999999887322 2
Q ss_pred EEecCCCCccccccccccCCCCCCCCCC--chhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEe-cCC
Q 003769 639 TNLSSSQSRQDDCRTKKRSRDVELGCCS--YIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIA-LAD 715 (796)
Q Consensus 639 i~~dms~~~~~~~~~~k~~~~~~~~~~~--~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~-d~~ 715 (796)
...+.... ....+.. ..... +.|.- ..|.+..| ...|+|||||+++ ++ ++++.|+++|++|+++ +..
T Consensus 356 ~~~~~~~~-~~~l~~~-~~~~~-~~g~~~~~~G~l~~A----~~gil~IDEid~l--~~-~~q~~Ll~~le~~~i~i~~~ 425 (595)
T 3f9v_A 356 YTTGKGST-AAGLTAA-VVREK-GTGEYYLEAGALVLA----DGGIAVIDEIDKM--RD-EDRVAIHEAMEQQTVSIAKA 425 (595)
T ss_dssp CCCTTCST-TTTSEEE-CSSGG-GTSSCSEEECHHHHH----SSSEECCTTTTCC--CS-HHHHHHHHHHHSSSEEEESS
T ss_pred ecCCCccc-cccccce-eeecc-ccccccccCCeeEec----CCCcEEeehhhhC--CH-hHhhhhHHHHhCCEEEEecC
Confidence 22221100 0000000 00000 11111 11344444 4579999999999 99 9999999999999998 445
Q ss_pred CceecC-CcEEEEeeCCC
Q 003769 716 GEIVPL-KDSIIIFSCDS 732 (796)
Q Consensus 716 G~~v~~-~n~IiilTsn~ 732 (796)
|....+ .++.||+|+|.
T Consensus 426 g~~~~~~~~~~vIaatNp 443 (595)
T 3f9v_A 426 GIVAKLNARAAVIAAGNP 443 (595)
T ss_dssp SSEEEECCCCEEEEEECC
T ss_pred CcEEEecCceEEEEEcCC
Confidence 666665 57899999995
No 72
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.66 E-value=1.2e-07 Score=99.91 Aligned_cols=136 Identities=14% Similarity=0.192 Sum_probs=87.2
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEcc
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLGD 286 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfIDE 286 (796)
+++++|+||||+|||++++.++..+. ..++.++...+...+.++.+.++..+++.... ..+.++||||
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~~~----------~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~i~~iDe 140 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGEAR----------VPFITASGSDFVEMFVGVGAARVRDLFETAKR--HAPCIVFIDE 140 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHTT----------CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHT--SCSEEEEEET
T ss_pred CCeEEEECCCcChHHHHHHHHHHHcC----------CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHh--cCCcEEehhh
Confidence 45689999999999999999998752 34777887777667778888899999998875 3578999999
Q ss_pred hhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcC--CCC-cEEEEEecChHHHHHhhhcCccccc--cccce
Q 003769 287 LKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIG--ESE-RVWIMGIASFQTYTRCKAGHPSLEN--MWKLH 361 (796)
Q Consensus 287 lh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~--~~G-~l~~IGatT~~ey~k~~~~dpaLer--rf~lq 361 (796)
++.+...+.. + ..+ ........ +..++..++ ... .+.++++|+..+ ..||+|-| ||..
T Consensus 141 id~l~~~~~~--~-~~~-----~~~~~~~~---~~~ll~~lsgg~~~~~~i~~a~t~~p~-----~ld~~l~r~~rf~~- 203 (278)
T 1iy2_A 141 IDAVGRKRGS--G-VGG-----GNDEREQT---LNQLLVEMDGFEKDTAIVVMAATNRPD-----ILDPALLRPGRFDR- 203 (278)
T ss_dssp HHHHHCC----------------CHHHHHH---HHHHHHHHTTCCTTCCEEEEEEESCTT-----SSCHHHHSTTSSCC-
T ss_pred hHhhhccccc--c-cCC-----cchHHHHH---HHHHHHHHhCCCCCCCEEEEEecCCch-----hCCHhHcCCCcCCe-
Confidence 9998765310 0 000 00011111 333443332 222 356666666442 37899988 6653
Q ss_pred ecccCCCCcc
Q 003769 362 PFTIPVGSLS 371 (796)
Q Consensus 362 ~V~vp~~~l~ 371 (796)
.|.+|.|+..
T Consensus 204 ~i~i~~p~~~ 213 (278)
T 1iy2_A 204 QIAIDAPDVK 213 (278)
T ss_dssp EEECCCCCHH
T ss_pred EEEeCCcCHH
Confidence 5566655544
No 73
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.65 E-value=1.2e-07 Score=102.87 Aligned_cols=130 Identities=11% Similarity=0.154 Sum_probs=85.0
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCC------cccccccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQS------RQDDCRTK 654 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~------~~~~~~~~ 654 (796)
.|||.+++..+.+++.. ++....+||.||.| +|||.+|+.+|+.+++.. ..-. --+... ..+.|.-.
T Consensus 4 ~pw~~~~~~~l~~~i~~---~~~~~a~L~~G~~G--~GKt~~a~~la~~l~~~~-~~~~-~~c~~c~~c~~~~~~~~~d~ 76 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQA---GRGHHALLIQALPG--MGDDALIYALSRYLLCQQ-PQGH-KSCGHCRGCQLMQAGTHPDY 76 (334)
T ss_dssp CGGGHHHHHHHHHHHHT---TCCCSEEEEECCTT--SCHHHHHHHHHHHHTCSS-CBTT-BCCSCSHHHHHHHHTCCTTE
T ss_pred CCchHHHHHHHHHHHHc---CCcceeEEEECCCC--chHHHHHHHHHHHHhCCC-CCCC-CCCCCCHHHHHHhcCCCCCE
Confidence 69999999988887753 34445688999999 999999999999998754 2100 000000 00000000
Q ss_pred ccCCCCC----CCCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEE
Q 003769 655 KRSRDVE----LGCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSII 726 (796)
Q Consensus 655 k~~~~~~----~~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~Ii 726 (796)
... .+. ..+-+.+..+.+.+...| ++||++||+|+. .. ..+|.|+..+|+. -.+++|
T Consensus 77 ~~~-~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l--~~-~a~naLLk~lEep-----------~~~~~~ 141 (334)
T 1a5t_A 77 YTL-APEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALL--TD-AAANALLKTLEEP-----------PAETWF 141 (334)
T ss_dssp EEE-CCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGB--CH-HHHHHHHHHHTSC-----------CTTEEE
T ss_pred EEE-eccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhc--CH-HHHHHHHHHhcCC-----------CCCeEE
Confidence 000 000 011122335666666665 799999999999 99 9999999999863 258999
Q ss_pred EeeCCC
Q 003769 727 IFSCDS 732 (796)
Q Consensus 727 ilTsn~ 732 (796)
|++||.
T Consensus 142 Il~t~~ 147 (334)
T 1a5t_A 142 FLATRE 147 (334)
T ss_dssp EEEESC
T ss_pred EEEeCC
Confidence 998873
No 74
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.61 E-value=4.5e-08 Score=101.96 Aligned_cols=145 Identities=15% Similarity=0.175 Sum_probs=83.8
Q ss_pred ChHHHHHHHHHHhh---ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeeccccccc---------chH
Q 003769 192 DSDDVMSVLNALIN---KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQ---------SKG 259 (796)
Q Consensus 192 r~~ei~~vi~~L~r---~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~---------~rg 259 (796)
.+..++++++.+.+ ...+++|+||||||||++++.++...... +..++.++.+.+... .+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~-------~~~~~~v~~~~~~~~~~~~~l~g~~~~ 83 (265)
T 2bjv_A 11 EANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW-------QGPFISLNCAALNENLLDSELFGHEAG 83 (265)
T ss_dssp CCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT-------TSCEEEEEGGGSCHHHHHHHHHCCC--
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc-------CCCeEEEecCCCChhHHHHHhcCCccc
Confidence 45666677666654 66789999999999999999999865322 457899988765320 011
Q ss_pred HHHHHHHHHHHHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhh--c---C----CC
Q 003769 260 EVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFE--I---G----ES 330 (796)
Q Consensus 260 e~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~--~---~----~~ 330 (796)
.+..........+.. ..+.+|||||++.+... ..+. |..++.. + | ..
T Consensus 84 ~~~g~~~~~~~~l~~--a~~~~l~lDEi~~l~~~------------------~q~~----Ll~~l~~~~~~~~g~~~~~~ 139 (265)
T 2bjv_A 84 AFTGAQKRHPGRFER--ADGGTLFLDELATAPMM------------------VQEK----LLRVIEYGELERVGGSQPLQ 139 (265)
T ss_dssp -------CCCCHHHH--TTTSEEEEESGGGSCHH------------------HHHH----HHHHHHHCEECCCCC--CEE
T ss_pred ccccccccccchhhh--cCCcEEEEechHhcCHH------------------HHHH----HHHHHHhCCeecCCCccccc
Confidence 111100000011222 23469999999987653 1111 3334421 0 0 02
Q ss_pred CcEEEEEecChHHHHH--hhhcCccccccccceecccCC
Q 003769 331 ERVWIMGIASFQTYTR--CKAGHPSLENMWKLHPFTIPV 367 (796)
Q Consensus 331 G~l~~IGatT~~ey~k--~~~~dpaLerrf~lq~V~vp~ 367 (796)
..+++|++|+...... --.-++.|-.||....+.+|+
T Consensus 140 ~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~ 178 (265)
T 2bjv_A 140 VNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPP 178 (265)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCC
T ss_pred CCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCC
Confidence 3588999998753322 112458888887655666665
No 75
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.61 E-value=8.6e-08 Score=106.34 Aligned_cols=139 Identities=19% Similarity=0.152 Sum_probs=101.4
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDV 660 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~ 660 (796)
++|+..++..+.+.+.+. ......+|+.|++| +||+.+|+.|...-.... ..|+.+||+... +....+.+.|..
T Consensus 139 ~ig~s~~m~~l~~~i~~~--a~~~~~vli~Ge~G--tGK~~lAr~ih~~s~r~~-~~fv~v~~~~~~-~~~~~~elfg~~ 212 (387)
T 1ny5_A 139 YVFESPKMKEILEKIKKI--SCAECPVLITGESG--VGKEVVARLIHKLSDRSK-EPFVALNVASIP-RDIFEAELFGYE 212 (387)
T ss_dssp CCCCSHHHHHHHHHHHHH--TTCCSCEEEECSTT--SSHHHHHHHHHHHSTTTT-SCEEEEETTTSC-HHHHHHHHHCBC
T ss_pred hhhccHHhhHHHHHHHHh--cCCCCCeEEecCCC--cCHHHHHHHHHHhcCCCC-CCeEEEecCCCC-HHHHHHHhcCCC
Confidence 788998888888877663 23344569999999 999999999999987777 889999999762 322222222211
Q ss_pred --CCCCCC--chhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 661 --ELGCCS--YIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 661 --~~~~~~--~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
.|.|.. ..|.+.. --..++|||||+.. ++ ++|..|++++++|.++.-.|.+...-|+-||+|||.
T Consensus 213 ~g~~tga~~~~~g~~~~----a~~gtlfldei~~l--~~-~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~ 281 (387)
T 1ny5_A 213 KGAFTGAVSSKEGFFEL----ADGGTLFLDEIGEL--SL-EAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNR 281 (387)
T ss_dssp TTSSTTCCSCBCCHHHH----TTTSEEEEESGGGC--CH-HHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESS
T ss_pred CCCCCCcccccCCceee----CCCcEEEEcChhhC--CH-HHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCC
Confidence 122321 1122222 23479999999999 99 999999999999999976666655667779999884
No 76
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.61 E-value=6.6e-08 Score=101.23 Aligned_cols=135 Identities=11% Similarity=0.140 Sum_probs=85.2
Q ss_pred HHHhhcCCCCCCcchHHHHHHHH----HHHhhc--cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCC
Q 003769 572 SDALERKAVVPWQKEIMPEIART----ILECRS--KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQ 645 (796)
Q Consensus 572 ~~~L~~~~~v~gQ~~av~~ia~~----i~~~rs--~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~ 645 (796)
...+... ++||.+++..+... +...+. .++...+||.||+| +|||.+|+++|+.+ + ..|+.++.++
T Consensus 28 ~~~~~~~--~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~G--tGKT~la~~ia~~~-~---~~~~~i~~~~ 99 (272)
T 1d2n_A 28 ASYIMNG--IIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPH--SGKTALAAKIAEES-N---FPFIKICSPD 99 (272)
T ss_dssp TTTCTTC--CCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTT--SSHHHHHHHHHHHH-T---CSEEEEECGG
T ss_pred HHHHhcC--CCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCC--CcHHHHHHHHHHHh-C---CCEEEEeCHH
Confidence 3445567 89999998888774 222222 55678899999999 99999999999985 4 3488887653
Q ss_pred CccccccccccCCCCCCCCCCchhhHHHHHHhCCCEEEEEcccccC----C----CChHHHHHHHHHHHHcceEecCCCc
Q 003769 646 SRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHRVFFMEDLDDH----K----VDSCYCQKGLKQAIENGCIALADGE 717 (796)
Q Consensus 646 ~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vvl~deieka----~----~~~~~v~~~l~q~~d~G~l~d~~G~ 717 (796)
. . .+............+.+.....+..||+|||||+. . ... .+++.|...++.-
T Consensus 100 ~----~-----~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~-~~l~~L~~~~~~~-------- 161 (272)
T 1d2n_A 100 K----M-----IGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSN-LVLQALLVLLKKA-------- 161 (272)
T ss_dssp G----C-----TTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCH-HHHHHHHHHTTCC--------
T ss_pred H----h-----cCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHH-HHHHHHHHHhcCc--------
Confidence 1 0 01000000012234455556688999999999873 0 134 5666666655321
Q ss_pred eecCCcEEEEeeCCC
Q 003769 718 IVPLKDSIIIFSCDS 732 (796)
Q Consensus 718 ~v~~~n~IiilTsn~ 732 (796)
.-.-.+.+||.|||.
T Consensus 162 ~~~~~~~~ii~ttn~ 176 (272)
T 1d2n_A 162 PPQGRKLLIIGTTSR 176 (272)
T ss_dssp CSTTCEEEEEEEESC
T ss_pred cCCCCCEEEEEecCC
Confidence 112246778888884
No 77
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.59 E-value=1.1e-07 Score=99.71 Aligned_cols=127 Identities=18% Similarity=0.151 Sum_probs=87.0
Q ss_pred CCCcchHHHHHHHHHHHhhc---------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccc
Q 003769 581 VPWQKEIMPEIARTILECRS---------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDC 651 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs---------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~ 651 (796)
++|+++++..|...+..... .++...+||.||+| +|||.+|++||..+ + ..++.+++++.. ..
T Consensus 19 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~G--tGKT~la~~la~~~-~---~~~~~v~~~~~~-~~- 90 (285)
T 3h4m_A 19 IGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPG--TGKTLLAKAVATET-N---ATFIRVVGSELV-KK- 90 (285)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSS--SSHHHHHHHHHHHT-T---CEEEEEEGGGGC-CC-
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCC--CcHHHHHHHHHHHh-C---CCEEEEehHHHH-Hh-
Confidence 78999999888888765322 24555688999999 99999999999987 3 458888876431 00
Q ss_pred cccccCCCCCCCCC--CchhhHHHHHHhCCCEEEEEcccccCC---------CChHHHHHHHHHHHHcceEecCCCceec
Q 003769 652 RTKKRSRDVELGCC--SYIERLGLALNENPHRVFFMEDLDDHK---------VDSCYCQKGLKQAIENGCIALADGEIVP 720 (796)
Q Consensus 652 ~~~k~~~~~~~~~~--~~~~~L~eavr~~P~~Vvl~deieka~---------~~~~~v~~~l~q~~d~G~l~d~~G~~v~ 720 (796)
+.|. .....+.+..+....+||+||||+..- .++ ..+..|++.++...-...
T Consensus 91 ----------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~-~~~~~l~~ll~~~~~~~~------ 153 (285)
T 3h4m_A 91 ----------FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDR-EVQRTLMQLLAEMDGFDA------ 153 (285)
T ss_dssp ----------STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGG-HHHHHHHHHHHHHHTTCS------
T ss_pred ----------ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccH-HHHHHHHHHHHHhhCCCC------
Confidence 1111 223456666777777999999999730 155 777778777765211111
Q ss_pred CCcEEEEeeCCC
Q 003769 721 LKDSIIIFSCDS 732 (796)
Q Consensus 721 ~~n~IiilTsn~ 732 (796)
-.+.+||+|||.
T Consensus 154 ~~~~~vI~ttn~ 165 (285)
T 3h4m_A 154 RGDVKIIGATNR 165 (285)
T ss_dssp SSSEEEEEECSC
T ss_pred CCCEEEEEeCCC
Confidence 146889999984
No 78
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.59 E-value=3.6e-07 Score=99.38 Aligned_cols=145 Identities=16% Similarity=0.138 Sum_probs=91.0
Q ss_pred ChHHHHHHHHHHhh-----ccC--ceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc---cc----
Q 003769 192 DSDDVMSVLNALIN-----KKR--NTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN---QS---- 257 (796)
Q Consensus 192 r~~ei~~vi~~L~r-----~k~--n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a---~~---- 257 (796)
|++++.++.+.|.+ ... +++|+||||+|||++++.++..+.... +..++.++...... .+
T Consensus 22 r~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~------~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 22 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT------TARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC------CCEEEEEETTTCCSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc------CeeEEEEeCccCCCHHHHHHHHH
Confidence 99999999988865 224 788999999999999999998875321 45788887543321 00
Q ss_pred ---------hH-HHHHHHHHHHHHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhc
Q 003769 258 ---------KG-EVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEI 327 (796)
Q Consensus 258 ---------rg-e~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~ 327 (796)
.+ ...+-+..+.+.+... +++.||||||+|++-.. .... |..++...
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~vlilDE~~~l~~~------------------~~~~----L~~~~~~~ 152 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRER-DLYMFLVLDDAFNLAPD------------------ILST----FIRLGQEA 152 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHT-TCCEEEEEETGGGSCHH------------------HHHH----HHHHTTCH
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhc-CCeEEEEEECccccchH------------------HHHH----HHHHHHhC
Confidence 01 1222333344444443 56899999999998221 1111 44444211
Q ss_pred CC--CCcEEEEEecChHHHHHhhhcCccccccccceecccCC
Q 003769 328 GE--SERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTIPV 367 (796)
Q Consensus 328 ~~--~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp~ 367 (796)
.. +..+.+|++|+..++... .++.+-+||....+.+|.
T Consensus 153 ~~~~~~~~~iI~~~~~~~~~~~--l~~~~~~r~~~~~i~~~p 192 (389)
T 1fnn_A 153 DKLGAFRIALVIVGHNDAVLNN--LDPSTRGIMGKYVIRFSP 192 (389)
T ss_dssp HHHSSCCEEEEEEESSTHHHHT--SCHHHHHHHTTCEEECCC
T ss_pred CCCCcCCEEEEEEECCchHHHH--hCHHhhhcCCCceEEeCC
Confidence 00 147999999876655543 467777887654566665
No 79
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.57 E-value=2.2e-07 Score=91.94 Aligned_cols=116 Identities=23% Similarity=0.408 Sum_probs=80.9
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCC-CCceEEecCCCCccccccccccCCC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSH-SNNFTNLSSSQSRQDDCRTKKRSRD 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~-~~~~i~~dms~~~~~~~~~~k~~~~ 659 (796)
++||++++..+...+... + ...++|.||+| +|||.+|+++++.+.+.. ...++.++.+... .
T Consensus 19 ~~g~~~~~~~l~~~l~~~---~-~~~~ll~G~~G--~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~---------- 81 (226)
T 2chg_A 19 VVGQDEVIQRLKGYVERK---N-IPHLLFSGPPG--TGKTATAIALARDLFGENWRDNFIEMNASDER-G---------- 81 (226)
T ss_dssp CCSCHHHHHHHHHHHHTT---C-CCCEEEECSTT--SSHHHHHHHHHHHHHGGGGGGGEEEEETTCTT-C----------
T ss_pred HcCcHHHHHHHHHHHhCC---C-CCeEEEECCCC--CCHHHHHHHHHHHHhccccccceEEecccccc-C----------
Confidence 789999988887777532 1 22389999999 999999999999885432 0235666654321 0
Q ss_pred CCCCCCCch-hhHHHHHH-----hCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 660 VELGCCSYI-ERLGLALN-----ENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 660 ~~~~~~~~~-~~L~eavr-----~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
.... ..+..... .....||+|||+++. ++ ..++.|++.+++. -.+++||+|||.
T Consensus 82 -----~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l--~~-~~~~~l~~~l~~~-----------~~~~~~i~~~~~ 141 (226)
T 2chg_A 82 -----IDVVRHKIKEFARTAPIGGAPFKIIFLDEADAL--TA-DAQAALRRTMEMY-----------SKSCRFILSCNY 141 (226)
T ss_dssp -----HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGS--CH-HHHHHHHHHHHHT-----------TTTEEEEEEESC
T ss_pred -----hHHHHHHHHHHhcccCCCccCceEEEEeChhhc--CH-HHHHHHHHHHHhc-----------CCCCeEEEEeCC
Confidence 0111 22223332 256789999999999 99 9999999999873 246788888873
No 80
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.57 E-value=2.4e-07 Score=100.86 Aligned_cols=148 Identities=9% Similarity=0.054 Sum_probs=92.0
Q ss_pred ChHHHHHHHHHHhh-----ccCceEEEcCCcccHHHHHHHHHHHHHcCCC-CCCCCCceEEEeeccccc-cc--c----h
Q 003769 192 DSDDVMSVLNALIN-----KKRNTVIVGGNLAAIEGVIRGIIDQFERGQV-PGDLRYAQFISLPLFSFR-NQ--S----K 258 (796)
Q Consensus 192 r~~ei~~vi~~L~r-----~k~n~vLvGepGvGKTaiv~~la~ri~~~~v-p~~L~~~~v~~l~~~~l~-a~--~----r 258 (796)
|++++..+.+.|.+ ..++++|+||||+|||++++.++..+..... .....+..++.++..... .. . .
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~ 104 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLA 104 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHH
Confidence 99999998887764 3567899999999999999999998743200 000114678888865433 10 0 0
Q ss_pred HHH------------HHHHHHHHHHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhh
Q 003769 259 GEV------------EQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFE 326 (796)
Q Consensus 259 ge~------------E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~ 326 (796)
.++ ...+..+.+.++. .+.||||||+|++.... . .+. . |..|+..
T Consensus 105 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~---~~~vlilDEi~~l~~~~-------~----------~~~--~-l~~l~~~ 161 (384)
T 2qby_B 105 GKLTGFSVPKHGINLGEYIDKIKNGTRN---IRAIIYLDEVDTLVKRR-------G----------GDI--V-LYQLLRS 161 (384)
T ss_dssp HHHHCSCCCSSSSCTHHHHHHHHHHHSS---SCEEEEEETTHHHHHST-------T----------SHH--H-HHHHHTS
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHhcc---CCCEEEEECHHHhccCC-------C----------Cce--e-HHHHhcC
Confidence 111 2234444444443 23499999999998641 0 111 0 2234421
Q ss_pred cCCCCcEEEEEecChHHHHHhhhcCccccccccceecccCCC
Q 003769 327 IGESERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTIPVG 368 (796)
Q Consensus 327 ~~~~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp~~ 368 (796)
...+.+|++|+...+.. ..++++.+||.. .+.+|..
T Consensus 162 ---~~~~~iI~~t~~~~~~~--~l~~~l~sr~~~-~i~l~~l 197 (384)
T 2qby_B 162 ---DANISVIMISNDINVRD--YMEPRVLSSLGP-SVIFKPY 197 (384)
T ss_dssp ---SSCEEEEEECSSTTTTT--TSCHHHHHTCCC-EEEECCC
T ss_pred ---CcceEEEEEECCCchHh--hhCHHHHhcCCC-eEEECCC
Confidence 26799999998765533 347888888754 6666654
No 81
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.56 E-value=2.7e-07 Score=99.25 Aligned_cols=114 Identities=15% Similarity=0.195 Sum_probs=83.7
Q ss_pred CcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHH--cC-CCCCceEEecCCCCccccccccccCCC
Q 003769 583 WQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVV--FG-SHSNNFTNLSSSQSRQDDCRTKKRSRD 659 (796)
Q Consensus 583 gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~--fg-~~~~~~i~~dms~~~~~~~~~~k~~~~ 659 (796)
||++++..+-+.|...+ .-.+||.||.| +|||++|++||+.+ +. .. .+++.++.+..
T Consensus 1 g~~~~~~~L~~~i~~~~----~~~~Lf~Gp~G--~GKtt~a~~la~~~~~~~~~~-~d~~~l~~~~~------------- 60 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE----GISILINGEDL--SYPREVSLELPEYVEKFPPKA-SDVLEIDPEGE------------- 60 (305)
T ss_dssp ---CHHHHHHHHHHTCS----SEEEEEECSSS--SHHHHHHHHHHHHHHTSCCCT-TTEEEECCSSS-------------
T ss_pred ChHHHHHHHHHHHHCCC----CcEEEEECCCC--CCHHHHHHHHHHhCchhhccC-CCEEEEcCCcC-------------
Confidence 79999999988886543 34889999999 99999999999864 21 12 45666664310
Q ss_pred CCCCCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 660 VELGCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 660 ~~~~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
..+-+.+..+.+.+...| ++||++||+|.. .. ..+|.|++.+|+.- .+++|||+|+.
T Consensus 61 --~~~id~ir~li~~~~~~p~~~~~kvviIdead~l--t~-~a~naLLk~LEep~-----------~~t~fIl~t~~ 121 (305)
T 2gno_A 61 --NIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERM--TQ-QAANAFLKALEEPP-----------EYAVIVLNTRR 121 (305)
T ss_dssp --CBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGB--CH-HHHHHTHHHHHSCC-----------TTEEEEEEESC
T ss_pred --CCCHHHHHHHHHHHhhccccCCceEEEeccHHHh--CH-HHHHHHHHHHhCCC-----------CCeEEEEEECC
Confidence 011223446777777777 589999999999 99 99999999999752 68999998863
No 82
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.55 E-value=2.2e-08 Score=95.24 Aligned_cols=129 Identities=17% Similarity=0.189 Sum_probs=78.0
Q ss_pred ChHHHHHHHHHHhh---ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHH
Q 003769 192 DSDDVMSVLNALIN---KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVEL 268 (796)
Q Consensus 192 r~~ei~~vi~~L~r---~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l 268 (796)
+++.++++.+.+.+ ...+++|+||||||||++++.++... + .++.++.+.+...+ +..+
T Consensus 9 ~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~----------~-~~~~~~~~~~~~~~-------~~~~ 70 (143)
T 3co5_A 9 NSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG----------T-PWVSPARVEYLIDM-------PMEL 70 (143)
T ss_dssp CCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT----------S-CEECCSSTTHHHHC-------HHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC----------C-CeEEechhhCChHh-------hhhH
Confidence 45666666666554 67789999999999999999987632 1 68888876654322 2333
Q ss_pred HHHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHH-Hh
Q 003769 269 SCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYT-RC 347 (796)
Q Consensus 269 ~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~-k~ 347 (796)
++.. .+.+|||||++.+-... ... |-.++... ....+++|++|+..... .-
T Consensus 71 ~~~a-----~~~~l~lDei~~l~~~~------------------q~~----Ll~~l~~~-~~~~~~iI~~tn~~~~~~~~ 122 (143)
T 3co5_A 71 LQKA-----EGGVLYVGDIAQYSRNI------------------QTG----ITFIIGKA-ERCRVRVIASCSYAAGSDGI 122 (143)
T ss_dssp HHHT-----TTSEEEEEECTTCCHHH------------------HHH----HHHHHHHH-TTTTCEEEEEEEECTTTC--
T ss_pred HHhC-----CCCeEEEeChHHCCHHH------------------HHH----HHHHHHhC-CCCCEEEEEecCCCHHHHHh
Confidence 3322 34689999999885531 111 23333211 13568999999865221 10
Q ss_pred hhcCccccccccceecccCC
Q 003769 348 KAGHPSLENMWKLHPFTIPV 367 (796)
Q Consensus 348 ~~~dpaLerrf~lq~V~vp~ 367 (796)
- -++.|-.|+....|.+|+
T Consensus 123 ~-~~~~L~~rl~~~~i~lPp 141 (143)
T 3co5_A 123 S-CEEKLAGLFSESVVRIPP 141 (143)
T ss_dssp C-HHHHHHHHSSSEEEEECC
T ss_pred C-ccHHHHHHhcCcEEeCCC
Confidence 0 224455565556677775
No 83
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.55 E-value=3e-07 Score=99.36 Aligned_cols=127 Identities=14% Similarity=0.133 Sum_probs=88.1
Q ss_pred CCCcchHHHHHHHHHHHhhc--------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCcccccc
Q 003769 581 VPWQKEIMPEIARTILECRS--------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCR 652 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs--------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~ 652 (796)
|.|++++...|-+.|...-. .+|...+||.||+| +|||.+|+++|..+-+ ..|+.+++++..
T Consensus 14 i~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppG--tGKT~la~ala~~~~~---~~~~~i~~~~l~----- 83 (322)
T 1xwi_A 14 VAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPG--TGKSYLAKAVATEANN---STFFSISSSDLV----- 83 (322)
T ss_dssp SCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSS--SCHHHHHHHHHHHTTS---CEEEEEECCSSC-----
T ss_pred hcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCC--ccHHHHHHHHHHHcCC---CcEEEEEhHHHH-----
Confidence 78999999988888864321 34556788999999 9999999999998843 458999887541
Q ss_pred ccccCCCCCCCCC--CchhhHHHHHHhCCCEEEEEcccccCCC---------ChHHHHHHHHHHHHcceEecCCCceecC
Q 003769 653 TKKRSRDVELGCC--SYIERLGLALNENPHRVFFMEDLDDHKV---------DSCYCQKGLKQAIENGCIALADGEIVPL 721 (796)
Q Consensus 653 ~~k~~~~~~~~~~--~~~~~L~eavr~~P~~Vvl~deieka~~---------~~~~v~~~l~q~~d~G~l~d~~G~~v~~ 721 (796)
.+ |.|. ..+..+.+..+.+..+||||||||...- .. .+.+-|+..++.- ..+-
T Consensus 84 -~~------~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~-~~~~~ll~~ld~~--------~~~~ 147 (322)
T 1xwi_A 84 -SK------WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAAR-RIKTEFLVQMQGV--------GVDN 147 (322)
T ss_dssp -CS------SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHH-HHHHHHHHHHHCS--------SSCC
T ss_pred -hh------hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHH-HHHHHHHHHHhcc--------cccC
Confidence 11 2222 2235667777788889999999996510 12 4556666666531 1223
Q ss_pred CcEEEEeeCCCC
Q 003769 722 KDSIIIFSCDSL 733 (796)
Q Consensus 722 ~n~IiilTsn~~ 733 (796)
.+.+||.|||.-
T Consensus 148 ~~v~vI~atn~~ 159 (322)
T 1xwi_A 148 DGILVLGATNIP 159 (322)
T ss_dssp TTEEEEEEESCT
T ss_pred CCEEEEEecCCc
Confidence 678899999853
No 84
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.54 E-value=2e-07 Score=101.21 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=23.0
Q ss_pred CceEEEcCCcccHHHHHHHHHHHHH
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQFE 232 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri~ 232 (796)
++++|+||||||||++++.++..+.
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999999874
No 85
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.54 E-value=2.4e-07 Score=99.19 Aligned_cols=130 Identities=10% Similarity=0.013 Sum_probs=84.3
Q ss_pred ChHHHHHHHHHHhh-ccCceEEE-cCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHH
Q 003769 192 DSDDVMSVLNALIN-KKRNTVIV-GGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELS 269 (796)
Q Consensus 192 r~~ei~~vi~~L~r-~k~n~vLv-GepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~ 269 (796)
.++.+..+.+.+.+ ...+++|+ ||||+|||++++.++..+ +..++.++.+... . ..+++++
T Consensus 31 ~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l----------~~~~~~i~~~~~~---~----~~i~~~~ 93 (324)
T 3u61_B 31 PAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV----------NADMMFVNGSDCK---I----DFVRGPL 93 (324)
T ss_dssp CHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT----------TEEEEEEETTTCC---H----HHHHTHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh----------CCCEEEEcccccC---H----HHHHHHH
Confidence 66667766666766 55566665 569999999999999876 4678888865422 2 2344434
Q ss_pred HHHHhcc---CCCEEEEEcchhhhh-hhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHH
Q 003769 270 CHVKSYM---GRGIVLYLGDLKWVA-EFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYT 345 (796)
Q Consensus 270 ~~v~~~~---~~~~ILfIDElh~l~-~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~ 345 (796)
....... +.+.||||||+|.+. .. .. +. |..++... .+.+.+|++|+...
T Consensus 94 ~~~~~~~~~~~~~~vliiDEi~~l~~~~------------------~~---~~-L~~~le~~--~~~~~iI~~~n~~~-- 147 (324)
T 3u61_B 94 TNFASAASFDGRQKVIVIDEFDRSGLAE------------------SQ---RH-LRSFMEAY--SSNCSIIITANNID-- 147 (324)
T ss_dssp HHHHHBCCCSSCEEEEEEESCCCGGGHH------------------HH---HH-HHHHHHHH--GGGCEEEEEESSGG--
T ss_pred HHHHhhcccCCCCeEEEEECCcccCcHH------------------HH---HH-HHHHHHhC--CCCcEEEEEeCCcc--
Confidence 4332211 357899999999986 32 11 12 44444221 35678888887643
Q ss_pred HhhhcCccccccccceecccCCCC
Q 003769 346 RCKAGHPSLENMWKLHPFTIPVGS 369 (796)
Q Consensus 346 k~~~~dpaLerrf~lq~V~vp~~~ 369 (796)
..+++|-+||. .+.++.++
T Consensus 148 ---~l~~~l~sR~~--~i~~~~~~ 166 (324)
T 3u61_B 148 ---GIIKPLQSRCR--VITFGQPT 166 (324)
T ss_dssp ---GSCTTHHHHSE--EEECCCCC
T ss_pred ---ccCHHHHhhCc--EEEeCCCC
Confidence 46899999974 45555444
No 86
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.54 E-value=1.7e-07 Score=100.79 Aligned_cols=130 Identities=15% Similarity=0.246 Sum_probs=80.3
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCC---CCCceEEecCCCCccccccccccC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGS---HSNNFTNLSSSQSRQDDCRTKKRS 657 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~---~~~~~i~~dms~~~~~~~~~~k~~ 657 (796)
++||++++..+...+.. .++. .+||.||+| +|||.+|++||+.+.+. . ..++.++.++.. ....+....
T Consensus 39 i~g~~~~~~~l~~~l~~---~~~~-~~ll~G~~G--~GKT~la~~la~~l~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~ 110 (353)
T 1sxj_D 39 VTAQDHAVTVLKKTLKS---ANLP-HMLFYGPPG--TGKTSTILALTKELYGPDLMK-SRILELNASDER-GISIVREKV 110 (353)
T ss_dssp CCSCCTTHHHHHHHTTC---TTCC-CEEEECSTT--SSHHHHHHHHHHHHHHHHHHT-TSEEEECSSSCC-CHHHHTTHH
T ss_pred hhCCHHHHHHHHHHHhc---CCCC-EEEEECCCC--CCHHHHHHHHHHHhCCCcccc-cceEEEcccccc-chHHHHHHH
Confidence 79999999887766542 2222 289999999 99999999999998642 2 346777765421 000000000
Q ss_pred C-CCCCCCCCchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 658 R-DVELGCCSYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 658 ~-~~~~~~~~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
. ....................++.||+|||++.. .+ ..++.|++.++++. .++.||++||.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l--~~-~~~~~Ll~~le~~~-----------~~~~~il~~~~ 172 (353)
T 1sxj_D 111 KNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM--TA-DAQSALRRTMETYS-----------GVTRFCLICNY 172 (353)
T ss_dssp HHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGS--CH-HHHHHHHHHHHHTT-----------TTEEEEEEESC
T ss_pred HHHhhhcccccchhhcccCCCCCceEEEEECCCcc--CH-HHHHHHHHHHHhcC-----------CCceEEEEeCc
Confidence 0 000000000000000011235689999999999 99 99999999999853 46778888763
No 87
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.53 E-value=2.4e-07 Score=104.53 Aligned_cols=128 Identities=14% Similarity=0.153 Sum_probs=87.1
Q ss_pred CCCcchHHHHHHHHHHHhhc--------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCcccccc
Q 003769 581 VPWQKEIMPEIARTILECRS--------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCR 652 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs--------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~ 652 (796)
|+||+++...+...|...-. .+|...+||.||+| +|||.+|++||..+.+ ..|+.+++++.. .
T Consensus 136 i~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppG--tGKT~lA~aia~~~~~---~~~~~v~~~~l~-~--- 206 (444)
T 2zan_A 136 VAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPG--TGKSYLAKAVATEANN---STFFSISSSDLV-S--- 206 (444)
T ss_dssp SCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTT--SSHHHHHHHHHHHCCS---SEEEEECCC--------
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCC--CCHHHHHHHHHHHcCC---CCEEEEeHHHHH-h---
Confidence 78999999999888854311 34567788999999 9999999999999844 459999987541 1
Q ss_pred ccccCCCCCCCCCCchhhHHHHHHhCCCEEEEEcccccCCC---------ChHHHHHHHHHHHHcceEecCCCceecCCc
Q 003769 653 TKKRSRDVELGCCSYIERLGLALNENPHRVFFMEDLDDHKV---------DSCYCQKGLKQAIENGCIALADGEIVPLKD 723 (796)
Q Consensus 653 ~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vvl~deieka~~---------~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n 723 (796)
+. .+. ....+..+.+..+.+..+||||||||...- .. .+++-|+..++. -...-.+
T Consensus 207 --~~---~g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~-~~~~~lL~~l~~--------~~~~~~~ 271 (444)
T 2zan_A 207 --KW---LGE-SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAAR-RIKTEFLVQMQG--------VGVDNDG 271 (444)
T ss_dssp -----------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGH-HHHHHHHTTTTC--------SSCCCSS
T ss_pred --hh---cch-HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHH-HHHHHHHHHHhC--------cccCCCC
Confidence 11 110 112345677777888889999999997510 12 466666666643 1123467
Q ss_pred EEEEeeCCC
Q 003769 724 SIIIFSCDS 732 (796)
Q Consensus 724 ~IiilTsn~ 732 (796)
.+||+|||.
T Consensus 272 v~vI~atn~ 280 (444)
T 2zan_A 272 ILVLGATNI 280 (444)
T ss_dssp CEEEEEESC
T ss_pred EEEEecCCC
Confidence 899999985
No 88
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.51 E-value=6.9e-07 Score=96.84 Aligned_cols=129 Identities=16% Similarity=0.172 Sum_probs=84.1
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCc------ccccc-c
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSR------QDDCR-T 653 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~------~~~~~-~ 653 (796)
++||++++..+...+... +....+||.||.| +|||.+|+++|+.+.... . .....+.... ...|. .
T Consensus 18 ~vg~~~~~~~L~~~l~~~---~~~~~~ll~G~~G--~GKT~la~~la~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
T 1jr3_A 18 VVGQEHVLTALANGLSLG---RIHHAYLFSGTRG--VGKTSIARLLAKGLNCET-G-ITATPCGVCDNCREIEQGRFVDL 90 (373)
T ss_dssp SCSCHHHHHHHHHHHHHT---CCCSEEEEESCTT--SSHHHHHHHHHHHHSCTT-C-SCSSCCSSSHHHHHHHTSCCSSC
T ss_pred ccCcHHHHHHHHHHHHhC---CCCeEEEEECCCC--CCHHHHHHHHHHHhCCCC-C-CCCCCCcccHHHHHHhccCCCce
Confidence 799999999998888643 2334678999999 999999999999996543 1 1111111000 00000 0
Q ss_pred cccCCCCCCCCCCchhhHHHHHHhCC----CEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEee
Q 003769 654 KKRSRDVELGCCSYIERLGLALNENP----HRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFS 729 (796)
Q Consensus 654 ~k~~~~~~~~~~~~~~~L~eavr~~P----~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilT 729 (796)
..... .+..+...+..+.+.+...| +.||+|||+++. +. ..++.|+..+++ .-.+++||++
T Consensus 91 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l--~~-~~~~~Ll~~le~-----------~~~~~~~Il~ 155 (373)
T 1jr3_A 91 IEIDA-ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML--SR-HSFNALLKTLEE-----------PPEHVKFLLA 155 (373)
T ss_dssp EEEET-TCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGS--CH-HHHHHHHHHHHS-----------CCSSEEEEEE
T ss_pred EEecc-cccCCHHHHHHHHHHHhhccccCCeEEEEEECcchh--cH-HHHHHHHHHHhc-----------CCCceEEEEE
Confidence 00000 00112233456666666555 789999999999 99 999999999986 1257888988
Q ss_pred CC
Q 003769 730 CD 731 (796)
Q Consensus 730 sn 731 (796)
++
T Consensus 156 ~~ 157 (373)
T 1jr3_A 156 TT 157 (373)
T ss_dssp ES
T ss_pred eC
Confidence 86
No 89
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.51 E-value=2e-07 Score=100.37 Aligned_cols=125 Identities=15% Similarity=0.173 Sum_probs=88.6
Q ss_pred CCCcchHHHHHHHHHHHhhc--------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCcccccc
Q 003769 581 VPWQKEIMPEIARTILECRS--------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCR 652 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs--------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~ 652 (796)
|+||++++..|-..|..... .+|...+||.||+| +|||.+|+++|..+ + ..|+.+++++..
T Consensus 20 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppG--tGKT~la~aia~~~-~---~~~~~v~~~~l~----- 88 (322)
T 3eie_A 20 VAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPG--TGKSYLAKAVATEA-N---STFFSVSSSDLV----- 88 (322)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSS--SCHHHHHHHHHHHH-T---CEEEEEEHHHHH-----
T ss_pred hcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCC--CcHHHHHHHHHHHH-C---CCEEEEchHHHh-----
Confidence 89999999999988854422 45566799999999 99999999999987 3 458998876331
Q ss_pred ccccCCCCCCCCC--CchhhHHHHHHhCCCEEEEEcccccCCC---------ChHHHHHHHHHHHHcceEecCCCceecC
Q 003769 653 TKKRSRDVELGCC--SYIERLGLALNENPHRVFFMEDLDDHKV---------DSCYCQKGLKQAIENGCIALADGEIVPL 721 (796)
Q Consensus 653 ~~k~~~~~~~~~~--~~~~~L~eavr~~P~~Vvl~deieka~~---------~~~~v~~~l~q~~d~G~l~d~~G~~v~~ 721 (796)
.+ |.|. ..+..+.+..+.+..+||||||||...- .. .+++-|+..++.-. -.-
T Consensus 89 -~~------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~-~~~~~ll~~l~~~~--------~~~ 152 (322)
T 3eie_A 89 -SK------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASR-RIKTELLVQMNGVG--------NDS 152 (322)
T ss_dssp -TT------TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTH-HHHHHHHHHHGGGG--------TSC
T ss_pred -hc------ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHH-HHHHHHHHHhcccc--------ccC
Confidence 01 1111 2235677777888889999999996511 23 46777777775321 123
Q ss_pred CcEEEEeeCCC
Q 003769 722 KDSIIIFSCDS 732 (796)
Q Consensus 722 ~n~IiilTsn~ 732 (796)
.+.+||.|||.
T Consensus 153 ~~v~vi~atn~ 163 (322)
T 3eie_A 153 QGVLVLGATNI 163 (322)
T ss_dssp CCEEEEEEESC
T ss_pred CceEEEEecCC
Confidence 56888989985
No 90
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.51 E-value=4e-07 Score=96.61 Aligned_cols=117 Identities=22% Similarity=0.350 Sum_probs=82.6
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCC-CCceEEecCCCCccccccccccCCC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSH-SNNFTNLSSSQSRQDDCRTKKRSRD 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~-~~~~i~~dms~~~~~~~~~~k~~~~ 659 (796)
++||++++..+...+... +. ..+||.||+| +|||.+|+++|+.+++.. ...++.++.++.. ...
T Consensus 27 ~~g~~~~~~~l~~~l~~~---~~-~~~ll~G~~G--~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~-~~~-------- 91 (327)
T 1iqp_A 27 IVGQEHIVKRLKHYVKTG---SM-PHLLFAGPPG--VGKTTAALALARELFGENWRHNFLELNASDER-GIN-------- 91 (327)
T ss_dssp CCSCHHHHHHHHHHHHHT---CC-CEEEEESCTT--SSHHHHHHHHHHHHHGGGHHHHEEEEETTCHH-HHH--------
T ss_pred hhCCHHHHHHHHHHHHcC---CC-CeEEEECcCC--CCHHHHHHHHHHHhcCCcccCceEEeeccccC-chH--------
Confidence 789999999888776542 22 2499999999 999999999999997642 0235666654220 000
Q ss_pred CCCCCCCchhhHHHHHHh-----CCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 660 VELGCCSYIERLGLALNE-----NPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 660 ~~~~~~~~~~~L~eavr~-----~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
...+.+.+..+. .++.||++||++.. .+ ..++.|++.+++. -.+++||+|||.
T Consensus 92 ------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l--~~-~~~~~L~~~le~~-----------~~~~~~i~~~~~ 149 (327)
T 1iqp_A 92 ------VIREKVKEFARTKPIGGASFKIIFLDEADAL--TQ-DAQQALRRTMEMF-----------SSNVRFILSCNY 149 (327)
T ss_dssp ------TTHHHHHHHHHSCCGGGCSCEEEEEETGGGS--CH-HHHHHHHHHHHHT-----------TTTEEEEEEESC
T ss_pred ------HHHHHHHHHHhhCCcCCCCCeEEEEeCCCcC--CH-HHHHHHHHHHHhc-----------CCCCeEEEEeCC
Confidence 011233333333 45789999999999 99 9999999999874 146789998874
No 91
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.50 E-value=2.9e-07 Score=97.49 Aligned_cols=116 Identities=15% Similarity=0.291 Sum_probs=82.6
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCC-CCceEEecCCCCccccccccccCCC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSH-SNNFTNLSSSQSRQDDCRTKKRSRD 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~-~~~~i~~dms~~~~~~~~~~k~~~~ 659 (796)
++||++++..+.+.+.. .+... +||.||+| +|||.+|+++|+.+++.. ...++.++.++..
T Consensus 23 ~~g~~~~~~~l~~~l~~---~~~~~-~ll~G~~G--~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~------------ 84 (323)
T 1sxj_B 23 IVGNKETIDRLQQIAKD---GNMPH-MIISGMPG--IGKTTSVHCLAHELLGRSYADGVLELNASDDR------------ 84 (323)
T ss_dssp CCSCTHHHHHHHHHHHS---CCCCC-EEEECSTT--SSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC------------
T ss_pred HHCCHHHHHHHHHHHHc---CCCCe-EEEECcCC--CCHHHHHHHHHHHhcCCcccCCEEEecCcccc------------
Confidence 78999999988877642 33333 89999999 999999999999986532 0235666654321
Q ss_pred CCCCCCCchhhHHHHHH-------hCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 660 VELGCCSYIERLGLALN-------ENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 660 ~~~~~~~~~~~L~eavr-------~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
+.+.+..+.+.+. ..++.||+|||+++. .. ..++.|++.+++.. .+++||++||.
T Consensus 85 ----~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l--~~-~~~~~L~~~le~~~-----------~~~~~il~~~~ 146 (323)
T 1sxj_B 85 ----GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSM--TA-GAQQALRRTMELYS-----------NSTRFAFACNQ 146 (323)
T ss_dssp ----SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGS--CH-HHHHTTHHHHHHTT-----------TTEEEEEEESC
T ss_pred ----ChHHHHHHHHHHHhccccCCCCCceEEEEECcccC--CH-HHHHHHHHHHhccC-----------CCceEEEEeCC
Confidence 0111222333333 345889999999999 99 99999999998731 57888998874
No 92
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.50 E-value=3.9e-08 Score=105.56 Aligned_cols=140 Identities=16% Similarity=0.152 Sum_probs=83.8
Q ss_pred ChHHHHHHHHHHhh---ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeeccccccc------------
Q 003769 192 DSDDVMSVLNALIN---KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQ------------ 256 (796)
Q Consensus 192 r~~ei~~vi~~L~r---~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~------------ 256 (796)
++..++.+.+.+.+ ...+++|+||||||||++++.++....+. +..|+.++.+.+...
T Consensus 7 ~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~-------~~~~v~v~~~~~~~~l~~~~lfg~~~g 79 (304)
T 1ojl_A 7 SSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARS-------DRPLVTLNCAALNESLLESELFGHEKG 79 (304)
T ss_dssp CSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCS-------SSCCCEEECSSCCHHHHHHHHTCCCSS
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCccc-------CCCeEEEeCCCCChHHHHHHhcCcccc
Confidence 55667777777765 67788899999999999999999865332 456888887665320
Q ss_pred -chHHHHHHHHHHHHHHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhc-----C--
Q 003769 257 -SKGEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEI-----G-- 328 (796)
Q Consensus 257 -~rge~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~-----~-- 328 (796)
+.|.... ...+++.. .+.+|||||++.+-.. .. .. |..++... |
T Consensus 80 ~~tg~~~~-~~g~~~~a-----~~g~L~LDEi~~l~~~------------------~q---~~-Ll~~l~~~~~~~~g~~ 131 (304)
T 1ojl_A 80 AFTGADKR-REGRFVEA-----DGGTLFLDEIGDISPL------------------MQ---VR-LLRAIQEREVQRVGSN 131 (304)
T ss_dssp CCC---CC-CCCHHHHH-----TTSEEEEESCTTCCHH------------------HH---HH-HHHHHHSSBCCBTTBC
T ss_pred ccCchhhh-hcCHHHhc-----CCCEEEEeccccCCHH------------------HH---HH-HHHHHhcCEeeecCCc
Confidence 1111110 11122221 2458999999987543 11 11 33344210 0
Q ss_pred --CCCcEEEEEecChHHHHHhhh---cCccccccccceecccCC
Q 003769 329 --ESERVWIMGIASFQTYTRCKA---GHPSLENMWKLHPFTIPV 367 (796)
Q Consensus 329 --~~G~l~~IGatT~~ey~k~~~---~dpaLerrf~lq~V~vp~ 367 (796)
....+++|+||+.+-.. .+. -++.|-.||...+|.+|+
T Consensus 132 ~~~~~~~riI~atn~~l~~-~v~~g~fr~~L~~Rl~~~~i~lPp 174 (304)
T 1ojl_A 132 QTISVDVRLIAATHRDLAE-EVSAGRFRQDLYYRLNVVAIEMPS 174 (304)
T ss_dssp CCCBCCCEEEEEESSCHHH-HHHHTSSCHHHHHHHSSEEEECCC
T ss_pred ccccCCeEEEEecCccHHH-HHHhCCcHHHHHhhcCeeEEeccC
Confidence 01348999999875322 222 357788887666666775
No 93
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.50 E-value=2.9e-07 Score=98.03 Aligned_cols=82 Identities=9% Similarity=0.086 Sum_probs=57.0
Q ss_pred ChHHHHHHHHHHhh------ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHH
Q 003769 192 DSDDVMSVLNALIN------KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKL 265 (796)
Q Consensus 192 r~~ei~~vi~~L~r------~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl 265 (796)
+++.++.+...+.. ...+++|+||||||||++++.++..+ +..++.++...+.. .+
T Consensus 17 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~----------~~~~~~~~~~~~~~--~~------ 78 (324)
T 1hqc_A 17 QERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL----------GVNLRVTSGPAIEK--PG------ 78 (324)
T ss_dssp CHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH----------TCCEEEECTTTCCS--HH------
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEeccccCC--hH------
Confidence 67777776666653 33789999999999999999999876 24577777655432 22
Q ss_pred HHHHHHHHh-ccCCCEEEEEcchhhhhhh
Q 003769 266 VELSCHVKS-YMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 266 ~~l~~~v~~-~~~~~~ILfIDElh~l~~~ 293 (796)
++...+.. . ..+.+|||||++.+...
T Consensus 79 -~l~~~l~~~~-~~~~~l~lDEi~~l~~~ 105 (324)
T 1hqc_A 79 -DLAAILANSL-EEGDILFIDEIHRLSRQ 105 (324)
T ss_dssp -HHHHHHTTTC-CTTCEEEETTTTSCCHH
T ss_pred -HHHHHHHHhc-cCCCEEEEECCcccccc
Confidence 23333333 2 45789999999987643
No 94
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.49 E-value=1.4e-07 Score=101.24 Aligned_cols=132 Identities=11% Similarity=0.052 Sum_probs=79.6
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHH-HHHHHHHHhccCCCEEEEEc
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKL-VELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl-~~l~~~v~~~~~~~~ILfID 285 (796)
.++++|+||||+|||++++.++..+... +.+++.++...+...+.+.+.... ..+..... .+.|||||
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~-------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~vL~iD 105 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR-------GYRVIYSSADDFAQAMVEHLKKGTINEFRNMYK----SVDLLLLD 105 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT-------TCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHH----TCSEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC-------CCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhc----CCCEEEEc
Confidence 3678899999999999999999988653 467888887776554444443322 22222222 36799999
Q ss_pred chhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhcCccccccccc-eecc
Q 003769 286 DLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAGHPSLENMWKL-HPFT 364 (796)
Q Consensus 286 Elh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~dpaLerrf~l-q~V~ 364 (796)
|+|.+.+.. .. ..+.... +..+. ..|...+|+++... ......+++|-+||.. ..+.
T Consensus 106 Ei~~l~~~~-------~~--------~~~l~~~-l~~~~----~~~~~iii~~~~~~--~~l~~l~~~L~sR~~~~~~i~ 163 (324)
T 1l8q_A 106 DVQFLSGKE-------RT--------QIEFFHI-FNTLY----LLEKQIILASDRHP--QKLDGVSDRLVSRFEGGILVE 163 (324)
T ss_dssp CGGGGTTCH-------HH--------HHHHHHH-HHHHH----HTTCEEEEEESSCG--GGCTTSCHHHHHHHHTSEEEE
T ss_pred CcccccCCh-------HH--------HHHHHHH-HHHHH----HCCCeEEEEecCCh--HHHHHhhhHhhhcccCceEEE
Confidence 999987531 00 1111111 22333 25555555554322 1223578999998743 4466
Q ss_pred cCCCCccc
Q 003769 365 IPVGSLSL 372 (796)
Q Consensus 365 vp~~~l~~ 372 (796)
+|. +...
T Consensus 164 l~~-~~~e 170 (324)
T 1l8q_A 164 IEL-DNKT 170 (324)
T ss_dssp CCC-CHHH
T ss_pred eCC-CHHH
Confidence 665 5443
No 95
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.49 E-value=2.7e-07 Score=98.88 Aligned_cols=113 Identities=13% Similarity=0.127 Sum_probs=84.1
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDV 660 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~ 660 (796)
++||++++..+.+.+. ..+...-+||.||+| +|||.+|+++|+.+ + ..++.++.+... ...
T Consensus 28 ivg~~~~~~~l~~~l~---~~~~~~~~L~~G~~G--~GKT~la~~la~~l-~---~~~~~i~~~~~~--~~~-------- 88 (324)
T 3u61_B 28 CILPAFDKETFKSITS---KGKIPHIILHSPSPG--TGKTTVAKALCHDV-N---ADMMFVNGSDCK--IDF-------- 88 (324)
T ss_dssp SCCCHHHHHHHHHHHH---TTCCCSEEEECSSTT--SSHHHHHHHHHHHT-T---EEEEEEETTTCC--HHH--------
T ss_pred HhCcHHHHHHHHHHHH---cCCCCeEEEeeCcCC--CCHHHHHHHHHHHh-C---CCEEEEcccccC--HHH--------
Confidence 7899999888877776 233335688999999 99999999999998 3 458888876442 000
Q ss_pred CCCCCCchhhHHHHHHhC----CCEEEEEcccccCCCC-hHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 661 ELGCCSYIERLGLALNEN----PHRVFFMEDLDDHKVD-SCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 661 ~~~~~~~~~~L~eavr~~----P~~Vvl~deieka~~~-~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
..+.+.+..... .+.||+||||+.. . . +.++.|++.+++.. .+++||+|||.
T Consensus 89 ------i~~~~~~~~~~~~~~~~~~vliiDEi~~l--~~~-~~~~~L~~~le~~~-----------~~~~iI~~~n~ 145 (324)
T 3u61_B 89 ------VRGPLTNFASAASFDGRQKVIVIDEFDRS--GLA-ESQRHLRSFMEAYS-----------SNCSIIITANN 145 (324)
T ss_dssp ------HHTHHHHHHHBCCCSSCEEEEEEESCCCG--GGH-HHHHHHHHHHHHHG-----------GGCEEEEEESS
T ss_pred ------HHHHHHHHHhhcccCCCCeEEEEECCccc--CcH-HHHHHHHHHHHhCC-----------CCcEEEEEeCC
Confidence 011233333333 5789999999999 8 8 99999999998742 57889999985
No 96
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.48 E-value=1.1e-06 Score=90.44 Aligned_cols=125 Identities=16% Similarity=0.193 Sum_probs=79.5
Q ss_pred CCCcchHHHHHHHHHHHhhc--------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCcccccc
Q 003769 581 VPWQKEIMPEIARTILECRS--------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCR 652 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs--------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~ 652 (796)
|+|+++++..|-+.+...+. .++...+||.||+| +|||.+|+++|+.+ + ..++.+++++.. +.
T Consensus 8 i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~G--tGKT~la~~la~~~-~---~~~~~~~~~~~~-~~-- 78 (262)
T 2qz4_A 8 VAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPG--CGKTLLAKAVATEA-Q---VPFLAMAGAEFV-EV-- 78 (262)
T ss_dssp SCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTT--SSHHHHHHHHHHHH-T---CCEEEEETTTTS-SS--
T ss_pred hCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCC--CCHHHHHHHHHHHh-C---CCEEEechHHHH-hh--
Confidence 78999988888777655433 13445688999999 99999999999987 3 458999987552 10
Q ss_pred ccccCCCCCCCCC--CchhhHHHHHHhCCCEEEEEcccccCCC----------Ch--HHHHHHHHHHHHcceEecCCCce
Q 003769 653 TKKRSRDVELGCC--SYIERLGLALNENPHRVFFMEDLDDHKV----------DS--CYCQKGLKQAIENGCIALADGEI 718 (796)
Q Consensus 653 ~~k~~~~~~~~~~--~~~~~L~eavr~~P~~Vvl~deieka~~----------~~--~~v~~~l~q~~d~G~l~d~~G~~ 718 (796)
+.|. .....+.+..+.+..+||+|||||.... +. ...++-|++.++.- +
T Consensus 79 ---------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~------~-- 141 (262)
T 2qz4_A 79 ---------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGM------G-- 141 (262)
T ss_dssp ---------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTC------C--
T ss_pred ---------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCc------C--
Confidence 1111 1223556666677789999999997610 11 02334444444421 1
Q ss_pred ecCCcEEEEeeCCC
Q 003769 719 VPLKDSIIIFSCDS 732 (796)
Q Consensus 719 v~~~n~IiilTsn~ 732 (796)
.-.+.+||+|+|.
T Consensus 142 -~~~~~~vi~~tn~ 154 (262)
T 2qz4_A 142 -TTDHVIVLASTNR 154 (262)
T ss_dssp -TTCCEEEEEEESC
T ss_pred -CCCCEEEEecCCC
Confidence 1257899999984
No 97
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.48 E-value=2.1e-07 Score=89.90 Aligned_cols=120 Identities=13% Similarity=0.144 Sum_probs=78.1
Q ss_pred cCCCCCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcC-------CCCCceEEecCCCCccc
Q 003769 577 RKAVVPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFG-------SHSNNFTNLSSSQSRQD 649 (796)
Q Consensus 577 ~~~~v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg-------~~~~~~i~~dms~~~~~ 649 (796)
.. ++|+++.+..+.+.+.. +....++|.||.| +|||.+|+++|+.+.. .. ..++.++++....
T Consensus 22 ~~--~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G--~GKT~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~- 91 (195)
T 1jbk_A 22 DP--VIGRDEEIRRTIQVLQR----RTKNNPVLIGEPG--VGKTAIVEGLAQRIINGEVPEGLKG-RRVLALDMGALVA- 91 (195)
T ss_dssp CC--CCSCHHHHHHHHHHHTS----SSSCEEEEECCTT--SCHHHHHHHHHHHHHHTCSCGGGTT-CEEEEECHHHHHT-
T ss_pred cc--cccchHHHHHHHHHHhc----CCCCceEEECCCC--CCHHHHHHHHHHHHHhCCCchhhcC-CcEEEeeHHHHhc-
Confidence 46 79999988888777643 2335678999999 9999999999999853 12 3466666642200
Q ss_pred cccccccCCCCCCCCC--CchhhHHHHH-HhCCCEEEEEcccccCCCC--------hHHHHHHHHHHHHcceEecCCCce
Q 003769 650 DCRTKKRSRDVELGCC--SYIERLGLAL-NENPHRVFFMEDLDDHKVD--------SCYCQKGLKQAIENGCIALADGEI 718 (796)
Q Consensus 650 ~~~~~k~~~~~~~~~~--~~~~~L~eav-r~~P~~Vvl~deieka~~~--------~~~v~~~l~q~~d~G~l~d~~G~~ 718 (796)
. .. +.|. .....+.+.+ +.+...||+|||++.. . . ++++.|++.++.+
T Consensus 92 ~--------~~-~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l--~~~~~~~~~~-~~~~~l~~~~~~~--------- 150 (195)
T 1jbk_A 92 G--------AK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTM--VGAGKADGAM-DAGNMLKPALARG--------- 150 (195)
T ss_dssp T--------TC-SHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGG--TT------CC-CCHHHHHHHHHTT---------
T ss_pred c--------CC-ccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHH--hccCcccchH-HHHHHHHHhhccC---------
Confidence 0 00 0000 1112333333 4466789999999987 4 3 5688888888654
Q ss_pred ecCCcEEEEeeCC
Q 003769 719 VPLKDSIIIFSCD 731 (796)
Q Consensus 719 v~~~n~IiilTsn 731 (796)
+.+||+|+|
T Consensus 151 ----~~~~i~~~~ 159 (195)
T 1jbk_A 151 ----ELHCVGATT 159 (195)
T ss_dssp ----SCCEEEEEC
T ss_pred ----CeEEEEeCC
Confidence 455777765
No 98
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.47 E-value=5e-07 Score=96.47 Aligned_cols=126 Identities=14% Similarity=0.158 Sum_probs=88.1
Q ss_pred CCCcchHHHHHHHHHHHhhc---------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccc
Q 003769 581 VPWQKEIMPEIARTILECRS---------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDC 651 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs---------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~ 651 (796)
|+|+++++..|-..|..--. .++...+||.||+| +|||.+|++||..+ + ..|+.+++++.. .
T Consensus 17 i~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~G--tGKT~la~ala~~~-~---~~~i~v~~~~l~-~-- 87 (301)
T 3cf0_A 17 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPG--CGKTLLAKAIANEC-Q---ANFISIKGPELL-T-- 87 (301)
T ss_dssp SCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSS--SSHHHHHHHHHHHT-T---CEEEEECHHHHH-H--
T ss_pred hCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCC--cCHHHHHHHHHHHh-C---CCEEEEEhHHHH-h--
Confidence 88999999998888865311 35556788999999 99999999999987 3 458888876431 1
Q ss_pred cccccCCCCCCCCCCchhhHHHHHHhCCCEEEEEcccccC------------CCChHHHHHHHHHHHHcceEecCCCcee
Q 003769 652 RTKKRSRDVELGCCSYIERLGLALNENPHRVFFMEDLDDH------------KVDSCYCQKGLKQAIENGCIALADGEIV 719 (796)
Q Consensus 652 ~~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vvl~deieka------------~~~~~~v~~~l~q~~d~G~l~d~~G~~v 719 (796)
+..+ . ....+..+.+..+.+..+||+|||||.. +... .+++-|++.++.-.
T Consensus 88 ---~~~g---~-~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~-~~~~~lL~~l~~~~--------- 150 (301)
T 3cf0_A 88 ---MWFG---E-SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAAD-RVINQILTEMDGMS--------- 150 (301)
T ss_dssp ---HHHT---T-CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCC-HHHHHHHHHHHSSC---------
T ss_pred ---hhcC---c-hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHH-HHHHHHHHHhhccc---------
Confidence 1011 0 0122345666677777899999999953 0134 56788888887311
Q ss_pred cCCcEEEEeeCCC
Q 003769 720 PLKDSIIIFSCDS 732 (796)
Q Consensus 720 ~~~n~IiilTsn~ 732 (796)
+-.+.+||+|||.
T Consensus 151 ~~~~v~vi~atn~ 163 (301)
T 3cf0_A 151 TKKNVFIIGATNR 163 (301)
T ss_dssp TTSSEEEEEEESC
T ss_pred CCCCEEEEEecCC
Confidence 2357899999985
No 99
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.47 E-value=3.7e-07 Score=99.97 Aligned_cols=124 Identities=15% Similarity=0.177 Sum_probs=86.3
Q ss_pred CCCcchHHHHHHHHHHHhhc--------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCcccccc
Q 003769 581 VPWQKEIMPEIARTILECRS--------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCR 652 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs--------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~ 652 (796)
|+||++++..|-.+|..... .+|...+||.||+| +|||.+|+++|..+ + ..|+.+++++..
T Consensus 53 i~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppG--tGKT~la~ala~~~-~---~~~~~v~~~~l~----- 121 (355)
T 2qp9_X 53 VAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPG--TGKSYLAKAVATEA-N---STFFSVSSSDLV----- 121 (355)
T ss_dssp SCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTT--SCHHHHHHHHHHHH-T---CEEEEEEHHHHH-----
T ss_pred hCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCC--CcHHHHHHHHHHHh-C---CCEEEeeHHHHh-----
Confidence 89999999999988854311 34556688999999 99999999999998 3 458888876321
Q ss_pred ccccCCCCCCCCC--CchhhHHHHHHhCCCEEEEEcccccCCCCh----------HHHHHHHHHHHHcceEecCCCceec
Q 003769 653 TKKRSRDVELGCC--SYIERLGLALNENPHRVFFMEDLDDHKVDS----------CYCQKGLKQAIENGCIALADGEIVP 720 (796)
Q Consensus 653 ~~k~~~~~~~~~~--~~~~~L~eavr~~P~~Vvl~deieka~~~~----------~~v~~~l~q~~d~G~l~d~~G~~v~ 720 (796)
.+ |.|. ..+..+.+..+.+..+||+|||||.. .+ ..+++.|+..++.-. -.
T Consensus 122 -~~------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l--~~~r~~~~~~~~~~~~~~ll~~l~~~~--------~~ 184 (355)
T 2qp9_X 122 -SK------WMGESEKLVKQLFAMARENKPSIIFIDQVDAL--TGTRGEGESEASRRIKTELLVQMNGVG--------ND 184 (355)
T ss_dssp -SC------C---CHHHHHHHHHHHHHTSSEEEEEECGGGG--TC------CTHHHHHHHHHHHHHHHCC----------
T ss_pred -hh------hcchHHHHHHHHHHHHHHcCCeEEEEechHhh--cccCCCCcchHHHHHHHHHHHHhhccc--------cc
Confidence 01 1222 12345666777778899999999976 42 046777888776311 12
Q ss_pred CCcEEEEeeCCC
Q 003769 721 LKDSIIIFSCDS 732 (796)
Q Consensus 721 ~~n~IiilTsn~ 732 (796)
-.+.+||.|||.
T Consensus 185 ~~~v~vI~atn~ 196 (355)
T 2qp9_X 185 SQGVLVLGATNI 196 (355)
T ss_dssp -CCEEEEEEESC
T ss_pred CCCeEEEeecCC
Confidence 356889999985
No 100
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.46 E-value=2.1e-07 Score=98.44 Aligned_cols=116 Identities=24% Similarity=0.417 Sum_probs=81.5
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCC-CCceEEecCCCCccccccccccCCC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSH-SNNFTNLSSSQSRQDDCRTKKRSRD 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~-~~~~i~~dms~~~~~~~~~~k~~~~ 659 (796)
++||++++..+.+.+.. .+. ..+||.||+| +|||.+|+++|+.+++.. ...++.++.+...
T Consensus 19 ~~g~~~~~~~l~~~l~~---~~~-~~~ll~G~~G--~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~------------ 80 (319)
T 2chq_A 19 VVGQDEVIQRLKGYVER---KNI-PHLLFSGPPG--TGKTATAIALARDLFGENWRDNFIEMNASDER------------ 80 (319)
T ss_dssp SCSCHHHHHHHHTTTTT---TCC-CCEEEESSSS--SSHHHHHHHHHHHHHTTCHHHHCEEEETTSTT------------
T ss_pred HhCCHHHHHHHHHHHhC---CCC-CeEEEECcCC--cCHHHHHHHHHHHhcCCcccCCeEEEeCcccc------------
Confidence 78998888877665542 222 2389999999 999999999999997653 0246777765331
Q ss_pred CCCCCCCch-hhHHHHHH-----hCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 660 VELGCCSYI-ERLGLALN-----ENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 660 ~~~~~~~~~-~~L~eavr-----~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
|...+ +.+.+..+ ..++.||+|||+++. .+ ..++.|++.+++. -.+++||++||.
T Consensus 81 ----~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l--~~-~~~~~L~~~le~~-----------~~~~~~i~~~~~ 141 (319)
T 2chq_A 81 ----GIDVVRHKIKEFARTAPIGGAPFKIIFLDEADAL--TA-DAQAALRRTMEMY-----------SKSCRFILSCNY 141 (319)
T ss_dssp ----CTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGS--CH-HHHHTTGGGTSSS-----------SSSEEEEEEESC
T ss_pred ----ChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcC--CH-HHHHHHHHHHHhc-----------CCCCeEEEEeCC
Confidence 01111 12222222 245789999999999 99 9999999998752 257889998874
No 101
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.46 E-value=2.1e-07 Score=102.11 Aligned_cols=76 Identities=13% Similarity=0.193 Sum_probs=51.6
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc-cchHH-HHHHHHHHHHHH----HhccCCC
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN-QSKGE-VEQKLVELSCHV----KSYMGRG 279 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a-~~rge-~E~rl~~l~~~v----~~~~~~~ 279 (796)
...+++|+||||||||++++.+|..+ +..++.++...+.. .|.|+ .+..+..++... .. ..+
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~ 138 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL----------DIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQK--AQK 138 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHH--HTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh----------CCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhh--cCC
Confidence 56789999999999999999999875 35788898877763 55554 244455555432 22 246
Q ss_pred EEEEEcchhhhhhh
Q 003769 280 IVLYLGDLKWVAEF 293 (796)
Q Consensus 280 ~ILfIDElh~l~~~ 293 (796)
.||||||++.+...
T Consensus 139 ~vl~iDEi~~l~~~ 152 (376)
T 1um8_A 139 GIVFIDEIDKISRL 152 (376)
T ss_dssp SEEEEETGGGC---
T ss_pred eEEEEcCHHHHhhh
Confidence 89999999999876
No 102
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.44 E-value=2.2e-07 Score=89.82 Aligned_cols=120 Identities=13% Similarity=0.123 Sum_probs=79.5
Q ss_pred cCCCCCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCC-------CCCceEEecCCCCccc
Q 003769 577 RKAVVPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGS-------HSNNFTNLSSSQSRQD 649 (796)
Q Consensus 577 ~~~~v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~-------~~~~~i~~dms~~~~~ 649 (796)
.. ++|+++.+..+.+.+.. .....+||.||+| +|||.+|+++|+.+... . ..++.++++... .
T Consensus 22 ~~--~~g~~~~~~~l~~~l~~----~~~~~vll~G~~G--~GKT~la~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~ 91 (187)
T 2p65_A 22 DP--VIGRDTEIRRAIQILSR----RTKNNPILLGDPG--VGKTAIVEGLAIKIVQGDVPDSLKG-RKLVSLDLSSLI-A 91 (187)
T ss_dssp CC--CCSCHHHHHHHHHHHTS----SSSCEEEEESCGG--GCHHHHHHHHHHHHHTTCSCTTTTT-CEEEEECHHHHH-H
T ss_pred ch--hhcchHHHHHHHHHHhC----CCCCceEEECCCC--CCHHHHHHHHHHHHHhcCCcchhcC-CeEEEEeHHHhh-c
Confidence 46 79999988887776643 3345679999999 99999999999998542 2 346666654220 0
Q ss_pred cccccccCCCCCCCCC--CchhhHHHHHHhC-CCEEEEEcccccCCCC---------hHHHHHHHHHHHHcceEecCCCc
Q 003769 650 DCRTKKRSRDVELGCC--SYIERLGLALNEN-PHRVFFMEDLDDHKVD---------SCYCQKGLKQAIENGCIALADGE 717 (796)
Q Consensus 650 ~~~~~k~~~~~~~~~~--~~~~~L~eavr~~-P~~Vvl~deieka~~~---------~~~v~~~l~q~~d~G~l~d~~G~ 717 (796)
.. . +.+. .....+.+.+... ...||+|||++.. . . ++++.|++.++++
T Consensus 92 ~~--------~-~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l--~~~~~~~~~~~-~~~~~l~~~~~~~-------- 151 (187)
T 2p65_A 92 GA--------K-YRGDFEERLKSILKEVQDAEGQVVMFIDEIHTV--VGAGAVAEGAL-DAGNILKPMLARG-------- 151 (187)
T ss_dssp HC--------C-SHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGG--SSSSSSCTTSC-CTHHHHHHHHHTT--------
T ss_pred CC--------C-chhHHHHHHHHHHHHHHhcCCceEEEEeCHHHh--cccccccccch-HHHHHHHHHHhcC--------
Confidence 00 0 0000 1123344444444 5579999999988 5 6 7889999988763
Q ss_pred eecCCcEEEEeeCC
Q 003769 718 IVPLKDSIIIFSCD 731 (796)
Q Consensus 718 ~v~~~n~IiilTsn 731 (796)
+.+||+|+|
T Consensus 152 -----~~~ii~~~~ 160 (187)
T 2p65_A 152 -----ELRCIGATT 160 (187)
T ss_dssp -----CSCEEEEEC
T ss_pred -----CeeEEEecC
Confidence 355888776
No 103
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.43 E-value=1e-06 Score=96.36 Aligned_cols=128 Identities=13% Similarity=0.151 Sum_probs=87.9
Q ss_pred cCCCCCCcchHHHHHHHHHHHhh--------ccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCcc
Q 003769 577 RKAVVPWQKEIMPEIARTILECR--------SKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQ 648 (796)
Q Consensus 577 ~~~~v~gQ~~av~~ia~~i~~~r--------s~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~ 648 (796)
.. |+||++++..|-+.|.+.. ..++...+||.||+| +|||.+|++||..+ + ..|+.+++++..
T Consensus 84 ~~--i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppG--tGKT~la~aia~~~-~---~~~~~i~~~~l~- 154 (357)
T 3d8b_A 84 ED--IAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPG--TGKTLIGKCIASQS-G---ATFFSISASSLT- 154 (357)
T ss_dssp GG--SCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTT--SSHHHHHHHHHHHT-T---CEEEEEEGGGGC-
T ss_pred HH--hCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCC--CCHHHHHHHHHHHc-C---CeEEEEehHHhh-
Confidence 45 8999999999999887531 134556788999999 99999999999987 3 458999887431
Q ss_pred ccccccccCCCCCCCCC--CchhhHHHHHHhCCCEEEEEcccccCCC---------ChHHHHHHHHHHHHcceEecCCCc
Q 003769 649 DDCRTKKRSRDVELGCC--SYIERLGLALNENPHRVFFMEDLDDHKV---------DSCYCQKGLKQAIENGCIALADGE 717 (796)
Q Consensus 649 ~~~~~~k~~~~~~~~~~--~~~~~L~eavr~~P~~Vvl~deieka~~---------~~~~v~~~l~q~~d~G~l~d~~G~ 717 (796)
. + +.|. .....+.+..+.....||||||||...- .. .+++-|+..++...-.
T Consensus 155 ~-----~------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~-~~~~~lL~~l~~~~~~----- 217 (357)
T 3d8b_A 155 S-----K------WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSR-RIKTEFLVQLDGATTS----- 217 (357)
T ss_dssp C-----S------STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHH-HHHHHHHHHHHC---------
T ss_pred c-----c------ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHH-HHHHHHHHHHhccccc-----
Confidence 1 0 1111 1224566667778889999999975400 12 5667778888743321
Q ss_pred eecCCcEEEEeeCCC
Q 003769 718 IVPLKDSIIIFSCDS 732 (796)
Q Consensus 718 ~v~~~n~IiilTsn~ 732 (796)
.-.+.+||.|||.
T Consensus 218 --~~~~v~vI~atn~ 230 (357)
T 3d8b_A 218 --SEDRILVVGATNR 230 (357)
T ss_dssp --CCCCEEEEEEESC
T ss_pred --CCCCEEEEEecCC
Confidence 1246789999885
No 104
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.42 E-value=1.5e-06 Score=91.75 Aligned_cols=127 Identities=12% Similarity=0.142 Sum_probs=86.3
Q ss_pred CCCcchHHHHHHHHHHHhhc--------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCcccccc
Q 003769 581 VPWQKEIMPEIARTILECRS--------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCR 652 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs--------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~ 652 (796)
|+||++++..+.+.|..... ..+...+||.||+| +|||.+|+++|..+ + ..|+.+++++.. .
T Consensus 23 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~G--tGKT~la~~la~~~-~---~~~~~i~~~~l~-~--- 92 (297)
T 3b9p_A 23 IAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPG--NGKTLLARAVATEC-S---ATFLNISAASLT-S--- 92 (297)
T ss_dssp SCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSS--SCHHHHHHHHHHHT-T---CEEEEEESTTTS-S---
T ss_pred hCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCC--CCHHHHHHHHHHHh-C---CCeEEeeHHHHh-h---
Confidence 89999999999888865322 34566789999999 99999999999987 3 458888887541 1
Q ss_pred ccccCCCCCCCCC--CchhhHHHHHHhCCCEEEEEcccccCC---------CChHHHHHHHHHHHHcceEecCCCceecC
Q 003769 653 TKKRSRDVELGCC--SYIERLGLALNENPHRVFFMEDLDDHK---------VDSCYCQKGLKQAIENGCIALADGEIVPL 721 (796)
Q Consensus 653 ~~k~~~~~~~~~~--~~~~~L~eavr~~P~~Vvl~deieka~---------~~~~~v~~~l~q~~d~G~l~d~~G~~v~~ 721 (796)
.+.|. .....+.+..+....+||+||||+... ... .+++.|+..++.-.... .-
T Consensus 93 --------~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~-~~~~~ll~~l~~~~~~~------~~ 157 (297)
T 3b9p_A 93 --------KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASR-RLKTEFLVEFDGLPGNP------DG 157 (297)
T ss_dssp --------SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSH-HHHHHHHHHHHHCC-----------
T ss_pred --------cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHH-HHHHHHHHHHhcccccC------CC
Confidence 01222 122355566677778999999998651 123 56777888877533221 12
Q ss_pred CcEEEEeeCCC
Q 003769 722 KDSIIIFSCDS 732 (796)
Q Consensus 722 ~n~IiilTsn~ 732 (796)
.+.+||.|||.
T Consensus 158 ~~v~vi~~tn~ 168 (297)
T 3b9p_A 158 DRIVVLAATNR 168 (297)
T ss_dssp -CEEEEEEESC
T ss_pred CcEEEEeecCC
Confidence 45788888884
No 105
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.42 E-value=1.9e-06 Score=85.89 Aligned_cols=139 Identities=12% Similarity=0.080 Sum_probs=81.7
Q ss_pred ChHHHHHHHHHHhh-c-cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCC--------------CCceEEEeecccccc
Q 003769 192 DSDDVMSVLNALIN-K-KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDL--------------RYAQFISLPLFSFRN 255 (796)
Q Consensus 192 r~~ei~~vi~~L~r-~-k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L--------------~~~~v~~l~~~~l~a 255 (796)
|++++..+.+.+.. . .+.++|+||||+|||++++.++..+......... ....++.++...
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 104 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS--- 104 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTC---
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcc---
Confidence 88999998888876 3 3467899999999999999999988643211000 001233333211
Q ss_pred cchHHHHHHHHHHHHHHHhcc--CCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcE
Q 003769 256 QSKGEVEQKLVELSCHVKSYM--GRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERV 333 (796)
Q Consensus 256 ~~rge~E~rl~~l~~~v~~~~--~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l 333 (796)
......+.++++.+.... +++.||||||+|++... ..+ . |..++.. ..+.+
T Consensus 105 ---~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~------------------~~~---~-l~~~l~~--~~~~~ 157 (250)
T 1njg_A 105 ---RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH------------------SFN---A-LLKTLEE--PPEHV 157 (250)
T ss_dssp ---GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH------------------HHH---H-HHHHHHS--CCTTE
T ss_pred ---cccHHHHHHHHHHhhhchhcCCceEEEEECcccccHH------------------HHH---H-HHHHHhc--CCCce
Confidence 111233455555443210 45799999999997543 111 1 4444421 13568
Q ss_pred EEEEecChHHHHHhhhcCccccccccceecccCC
Q 003769 334 WIMGIASFQTYTRCKAGHPSLENMWKLHPFTIPV 367 (796)
Q Consensus 334 ~~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp~ 367 (796)
.+|.+|+... ..++++.+|+ ..+.+|.
T Consensus 158 ~~i~~t~~~~-----~~~~~l~~r~--~~i~l~~ 184 (250)
T 1njg_A 158 KFLLATTDPQ-----KLPVTILSRC--LQFHLKA 184 (250)
T ss_dssp EEEEEESCGG-----GSCHHHHTTS--EEEECCC
T ss_pred EEEEEeCChH-----hCCHHHHHHh--hhccCCC
Confidence 8888886532 3456676664 4555554
No 106
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.42 E-value=1.9e-07 Score=97.24 Aligned_cols=127 Identities=15% Similarity=0.159 Sum_probs=80.3
Q ss_pred CCCcchHHHHHHHHHHHhhc--------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCcccccc
Q 003769 581 VPWQKEIMPEIARTILECRS--------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCR 652 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs--------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~ 652 (796)
++||++++..+-+.+...+. .++...+||.||+| +|||.+|++||..+- ..++.++++... ...
T Consensus 13 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~G--tGKT~la~~la~~~~----~~~~~v~~~~~~-~~~- 84 (268)
T 2r62_A 13 MAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPG--TGKTLLAKAVAGEAH----VPFFSMGGSSFI-EMF- 84 (268)
T ss_dssp SSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSC--SSHHHHHHHHHHHHT----CCCCCCCSCTTT-TSC-
T ss_pred hCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCC--CcHHHHHHHHHHHhC----CCEEEechHHHH-Hhh-
Confidence 78888888888877664332 12223378999999 999999999999873 347888877542 111
Q ss_pred ccccCCCCCCCCCCchhhHHHHHHhCCCEEEEEcccccCCCChH--------------HHHHHHHHHHHcceEecCCCce
Q 003769 653 TKKRSRDVELGCCSYIERLGLALNENPHRVFFMEDLDDHKVDSC--------------YCQKGLKQAIENGCIALADGEI 718 (796)
Q Consensus 653 ~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vvl~deieka~~~~~--------------~v~~~l~q~~d~G~l~d~~G~~ 718 (796)
.+. +......+.+..+.+..+||+|||||.. .+. ..++-|++.++. ..
T Consensus 85 -------~~~-~~~~~~~~~~~a~~~~~~vl~iDEid~l--~~~~~~~~~~~~~~~~~~~~~~ll~~l~~--------~~ 146 (268)
T 2r62_A 85 -------VGL-GASRVRDLFETAKKQAPSIIFIDEIDAI--GKSRAAGGVVSGNDEREQTLNQLLAEMDG--------FG 146 (268)
T ss_dssp -------SSS-CSSSSSTTHHHHHHSCSCEEEESCGGGT--TC----------CCCSCSSTTTTTTTTTC--------SS
T ss_pred -------cch-HHHHHHHHHHHHHhcCCeEEEEeChhhh--cccccccccCCCchhHHHHHHHHHHHhhC--------cc
Confidence 111 1122334556666667799999999987 441 123444554442 11
Q ss_pred ecCCcEEEEeeCCCC
Q 003769 719 VPLKDSIIIFSCDSL 733 (796)
Q Consensus 719 v~~~n~IiilTsn~~ 733 (796)
-.-.+.+||.|||.-
T Consensus 147 ~~~~~v~vi~ttn~~ 161 (268)
T 2r62_A 147 SENAPVIVLAATNRP 161 (268)
T ss_dssp CSCSCCEEEECBSCC
T ss_pred cCCCCEEEEEecCCc
Confidence 123457899999853
No 107
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.42 E-value=7.2e-07 Score=98.57 Aligned_cols=127 Identities=13% Similarity=0.132 Sum_probs=87.1
Q ss_pred CCCcchHHHHHHHHHHHhhc--------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCcccccc
Q 003769 581 VPWQKEIMPEIARTILECRS--------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCR 652 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs--------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~ 652 (796)
|+||++++..|...+..... ..+...+||.||+| +|||.+|+++|..+ + ..|+.+++++.. ..
T Consensus 117 iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppG--tGKT~la~aia~~~-~---~~~~~v~~~~l~-~~-- 187 (389)
T 3vfd_A 117 IAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPG--NGKTMLAKAVAAES-N---ATFFNISAASLT-SK-- 187 (389)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTT--SCHHHHHHHHHHHT-T---CEEEEECSCCC------
T ss_pred hCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCC--CCHHHHHHHHHHhh-c---CcEEEeeHHHhh-cc--
Confidence 79999999999888855432 34557899999999 99999999999986 3 459999987542 11
Q ss_pred ccccCCCCCCCCC--CchhhHHHHHHhCCCEEEEEcccccCC--------CChHHHHHHHHHHHHcceEecCCCceecCC
Q 003769 653 TKKRSRDVELGCC--SYIERLGLALNENPHRVFFMEDLDDHK--------VDSCYCQKGLKQAIENGCIALADGEIVPLK 722 (796)
Q Consensus 653 ~~k~~~~~~~~~~--~~~~~L~eavr~~P~~Vvl~deieka~--------~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~ 722 (796)
|.|. ..+..+.+..+....+||||||||... .....+++-|+..++...-. .-.
T Consensus 188 ---------~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~ 251 (389)
T 3vfd_A 188 ---------YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSA-------GDD 251 (389)
T ss_dssp -------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC------------
T ss_pred ---------ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccccc-------CCC
Confidence 2222 223466677777788999999998540 01226777788888743211 124
Q ss_pred cEEEEeeCCC
Q 003769 723 DSIIIFSCDS 732 (796)
Q Consensus 723 n~IiilTsn~ 732 (796)
+.+||.|||.
T Consensus 252 ~v~vI~atn~ 261 (389)
T 3vfd_A 252 RVLVMGATNR 261 (389)
T ss_dssp CEEEEEEESC
T ss_pred CEEEEEecCC
Confidence 6889999985
No 108
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.42 E-value=9.1e-07 Score=88.24 Aligned_cols=131 Identities=16% Similarity=0.198 Sum_probs=78.9
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCcc-ccccccccCCC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQ-DDCRTKKRSRD 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~-~~~~~~k~~~~ 659 (796)
++||++++..+...+...+ ....++|.||.| +|||.+|+++++.+.... ..+......... ...........
T Consensus 25 ~~g~~~~~~~l~~~l~~~~---~~~~~ll~G~~G--~GKT~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 97 (250)
T 1njg_A 25 VVGQEHVLTALANGLSLGR---IHHAYLFSGTRG--VGKTSIARLLAKGLNCET--GITATPCGVCDNCREIEQGRFVDL 97 (250)
T ss_dssp CCSCHHHHHHHHHHHHHTC---CCSEEEEECSTT--SCHHHHHHHHHHHHHCTT--CSCSSCCSCSHHHHHHHTTCCSSE
T ss_pred HhCcHHHHHHHHHHHHcCC---CCeEEEEECCCC--CCHHHHHHHHHHHhcCCC--CCCCCCCcccHHHHHHhccCCcce
Confidence 7999999998888876432 234789999999 999999999999886432 111111100000 00000000000
Q ss_pred CCCCCC--Cchh---hHHHHHHh----CCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeC
Q 003769 660 VELGCC--SYIE---RLGLALNE----NPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSC 730 (796)
Q Consensus 660 ~~~~~~--~~~~---~L~eavr~----~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTs 730 (796)
...... ...+ .+.+.+.. ....||+|||++.. ++ ..++.|++.+++. -.+++||+||
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l--~~-~~~~~l~~~l~~~-----------~~~~~~i~~t 163 (250)
T 1njg_A 98 IEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML--SR-HSFNALLKTLEEP-----------PEHVKFLLAT 163 (250)
T ss_dssp EEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS--CH-HHHHHHHHHHHSC-----------CTTEEEEEEE
T ss_pred EEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccc--cH-HHHHHHHHHHhcC-----------CCceEEEEEe
Confidence 000000 1112 23333322 34689999999999 99 9999999999753 2467888888
Q ss_pred CC
Q 003769 731 DS 732 (796)
Q Consensus 731 n~ 732 (796)
|.
T Consensus 164 ~~ 165 (250)
T 1njg_A 164 TD 165 (250)
T ss_dssp SC
T ss_pred CC
Confidence 63
No 109
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.40 E-value=1.5e-06 Score=91.90 Aligned_cols=91 Identities=9% Similarity=0.130 Sum_probs=57.9
Q ss_pred ChHHHHHHHHHHhh-c---------cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccc-hHH
Q 003769 192 DSDDVMSVLNALIN-K---------KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQS-KGE 260 (796)
Q Consensus 192 r~~ei~~vi~~L~r-~---------k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~-rge 260 (796)
.+..+..+...+.+ . ..+++|+||||||||++++.++..+... +..++.++.+.+.... ..+
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 94 (311)
T 4fcw_A 22 QDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT-------EEAMIRIDMTEYMEKHAVSR 94 (311)
T ss_dssp CHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC-------GGGEEEEEGGGCCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC-------CcceEEeecccccccccHHH
Confidence 44555555555554 2 2478899999999999999999987643 3468888877654311 000
Q ss_pred H----------HHHHHHHHHHHHhccCCCEEEEEcchhhhhh
Q 003769 261 V----------EQKLVELSCHVKSYMGRGIVLYLGDLKWVAE 292 (796)
Q Consensus 261 ~----------E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~ 292 (796)
+ +. ...+...+.. ..+.||||||++.+-.
T Consensus 95 l~g~~~~~~~~~~-~~~~~~~~~~--~~~~vl~lDEi~~l~~ 133 (311)
T 4fcw_A 95 LIGAPPGYVGYEE-GGQLTEAVRR--RPYSVILFDAIEKAHP 133 (311)
T ss_dssp HHCCCTTSTTTTT-CCHHHHHHHH--CSSEEEEEETGGGSCH
T ss_pred hcCCCCccccccc-cchHHHHHHh--CCCeEEEEeChhhcCH
Confidence 0 00 0233344444 4568999999987743
No 110
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.39 E-value=4.6e-07 Score=97.50 Aligned_cols=49 Identities=10% Similarity=0.150 Sum_probs=38.6
Q ss_pred CEEEEEcccccCCCChHHHHHHHHHHHHcce--EecCCCceec-CCcEEEEeeCCC
Q 003769 680 HRVFFMEDLDDHKVDSCYCQKGLKQAIENGC--IALADGEIVP-LKDSIIIFSCDS 732 (796)
Q Consensus 680 ~~Vvl~deieka~~~~~~v~~~l~q~~d~G~--l~d~~G~~v~-~~n~IiilTsn~ 732 (796)
..|++||||++. .+ ++++.|++.+++|. ++. .|.... -.+.+||.|+|.
T Consensus 145 ~~vl~iDEi~~l--~~-~~~~~Ll~~le~~~~~~~~-~g~~~~~~~~~~li~~~n~ 196 (350)
T 1g8p_A 145 RGYLYIDECNLL--ED-HIVDLLLDVAQSGENVVER-DGLSIRHPARFVLVGSGNP 196 (350)
T ss_dssp TEEEEETTGGGS--CH-HHHHHHHHHHHHSEEEECC-TTCCEEEECCEEEEEEECS
T ss_pred CCEEEEeChhhC--CH-HHHHHHHHHHhcCceEEEe-cceEEeeCCceEEEEEeCC
Confidence 679999999999 99 99999999999996 433 333322 237889999983
No 111
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.38 E-value=5.1e-07 Score=91.07 Aligned_cols=81 Identities=12% Similarity=0.024 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhh-ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHH
Q 003769 194 DDVMSVLNALIN-KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHV 272 (796)
Q Consensus 194 ~ei~~vi~~L~r-~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v 272 (796)
+-+..+...+.. ..++++|+||||+|||++++.++..+... +..++.++...+...+.. +++.+
T Consensus 38 ~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~--------~~~~~ 102 (242)
T 3bos_A 38 ELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL-------ERRSFYIPLGIHASISTA--------LLEGL 102 (242)
T ss_dssp HHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEEGGGGGGSCGG--------GGTTG
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEHHHHHHHHHH--------HHHhc
Confidence 333333333333 67889999999999999999999988653 456788887766553221 11111
Q ss_pred HhccCCCEEEEEcchhhhhhh
Q 003769 273 KSYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 273 ~~~~~~~~ILfIDElh~l~~~ 293 (796)
..+.||||||++.+...
T Consensus 103 ----~~~~vliiDe~~~~~~~ 119 (242)
T 3bos_A 103 ----EQFDLICIDDVDAVAGH 119 (242)
T ss_dssp ----GGSSEEEEETGGGGTTC
T ss_pred ----cCCCEEEEeccccccCC
Confidence 34679999999988653
No 112
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.38 E-value=1e-06 Score=98.05 Aligned_cols=126 Identities=20% Similarity=0.221 Sum_probs=86.9
Q ss_pred CCCcchHHHHHHHHHHHh-hc--------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccc
Q 003769 581 VPWQKEIMPEIARTILEC-RS--------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDC 651 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~-rs--------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~ 651 (796)
|.|.++++.+|-.+|..- +- -+|.--+||.||+| +|||.+||++|... | -+|++++.++..
T Consensus 150 IgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPG--TGKTllAkAiA~e~-~---~~f~~v~~s~l~---- 219 (405)
T 4b4t_J 150 VGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPG--TGKTLLARAVAHHT-D---CKFIRVSGAELV---- 219 (405)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSS--SSHHHHHHHHHHHH-T---CEEEEEEGGGGS----
T ss_pred hCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCC--CCHHHHHHHHHHhh-C---CCceEEEhHHhh----
Confidence 788888888888888652 21 34444577999999 99999999999998 4 459999987541
Q ss_pred cccccCCCCCCCCCC--chhhHHHHHHhCCCEEEEEcccccCCC---------Ch--HHHHHHHHHHHHcceEecCCCce
Q 003769 652 RTKKRSRDVELGCCS--YIERLGLALNENPHRVFFMEDLDDHKV---------DS--CYCQKGLKQAIENGCIALADGEI 718 (796)
Q Consensus 652 ~~~k~~~~~~~~~~~--~~~~L~eavr~~P~~Vvl~deieka~~---------~~--~~v~~~l~q~~d~G~l~d~~G~~ 718 (796)
+| |.|.+ .+..+.+..+++.-+||||||||...- |. ..+++.||+-||.-
T Consensus 220 --sk------~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~--------- 282 (405)
T 4b4t_J 220 --QK------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF--------- 282 (405)
T ss_dssp --CS------STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT---------
T ss_pred --cc------ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc---------
Confidence 11 33322 235677788888889999999995411 12 02456666666521
Q ss_pred ecCCcEEEEeeCCCC
Q 003769 719 VPLKDSIIIFSCDSL 733 (796)
Q Consensus 719 v~~~n~IiilTsn~~ 733 (796)
-+-.+.+||+|||.-
T Consensus 283 ~~~~~V~vIaATNrp 297 (405)
T 4b4t_J 283 ETSKNIKIIMATNRL 297 (405)
T ss_dssp TCCCCEEEEEEESCS
T ss_pred CCCCCeEEEeccCCh
Confidence 113578899999964
No 113
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.38 E-value=1.3e-07 Score=109.45 Aligned_cols=126 Identities=12% Similarity=0.127 Sum_probs=72.7
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc---------cchHHHHHHHHHHHHHHHhcc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN---------QSKGEVEQKLVELSCHVKSYM 276 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a---------~~rge~E~rl~~l~~~v~~~~ 276 (796)
...+++|+||||||||++++.++..+ +..++.++++.+.. .|.|....++..++.....
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l----------~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~-- 174 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL----------GRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGK-- 174 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH----------TCEEEEECCCC--------------------CHHHHHHTTCS--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc----------CCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhc--
Confidence 46678999999999999999999876 24677777655432 4667777777776665543
Q ss_pred CCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhh---------cCC----CCcEEEEEecChHH
Q 003769 277 GRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFE---------IGE----SERVWIMGIASFQT 343 (796)
Q Consensus 277 ~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~---------~~~----~G~l~~IGatT~~e 343 (796)
.+.||||||++.+...+. |+ .. +. |..++.. ... -+.+.+|+||+...
T Consensus 175 -~~~vl~lDEid~l~~~~~---~~-----------~~---~~-LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~ 235 (543)
T 3m6a_A 175 -LNPVFLLDEIDKMSSDFR---GD-----------PS---SA-MLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLA 235 (543)
T ss_dssp -SSEEEEEEESSSCC--------------------------C-CGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTT
T ss_pred -cCCEEEEhhhhhhhhhhc---cC-----------HH---HH-HHHHHhhhhcceeecccCCeeecccceEEEeccCccc
Confidence 234999999999876531 10 10 11 2222210 000 15678888887632
Q ss_pred HHHhhhcCccccccccceecccCCCC
Q 003769 344 YTRCKAGHPSLENMWKLHPFTIPVGS 369 (796)
Q Consensus 344 y~k~~~~dpaLerrf~lq~V~vp~~~ 369 (796)
..+|+|-+||+. +.+|.++
T Consensus 236 -----~l~~aL~~R~~v--i~~~~~~ 254 (543)
T 3m6a_A 236 -----TIPGPLRDRMEI--INIAGYT 254 (543)
T ss_dssp -----TSCHHHHHHEEE--EECCCCC
T ss_pred -----cCCHHHHhhcce--eeeCCCC
Confidence 578999999854 5555543
No 114
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.37 E-value=1.1e-06 Score=103.04 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=42.8
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSS 643 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dm 643 (796)
++||+.++..|..++.. ...++|.||+| +|||++|+.||..+.... -..+.++.
T Consensus 43 i~G~~~~l~~l~~~i~~------g~~vll~Gp~G--tGKTtlar~ia~~l~~~~-~~~~~~~~ 96 (604)
T 3k1j_A 43 VIGQEHAVEVIKTAANQ------KRHVLLIGEPG--TGKSMLGQAMAELLPTET-LEDILVFP 96 (604)
T ss_dssp CCSCHHHHHHHHHHHHT------TCCEEEECCTT--SSHHHHHHHHHHTSCCSS-CEEEEEEC
T ss_pred EECchhhHhhccccccC------CCEEEEEeCCC--CCHHHHHHHHhccCCccc-CCeEEEeC
Confidence 89999999888888763 24789999999 999999999999986543 34444433
No 115
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.37 E-value=1.5e-06 Score=97.85 Aligned_cols=126 Identities=21% Similarity=0.201 Sum_probs=87.0
Q ss_pred CCCcchHHHHHHHHHHHh-hc--------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccc
Q 003769 581 VPWQKEIMPEIARTILEC-RS--------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDC 651 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~-rs--------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~ 651 (796)
|.|.++++..|-.+|..- +. -+|.--+||.||+| +|||.+||+||..+ | -+|+.++.++..
T Consensus 183 igGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPG--tGKTllAkAiA~e~-~---~~~~~v~~s~l~---- 252 (437)
T 4b4t_L 183 IGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPG--TGKTLLAKAVAATI-G---ANFIFSPASGIV---- 252 (437)
T ss_dssp GCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTT--SSHHHHHHHHHHHH-T---CEEEEEEGGGTC----
T ss_pred hCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCC--CcHHHHHHHHHHHh-C---CCEEEEehhhhc----
Confidence 788899999988888652 21 34555677889999 99999999999998 4 459999887541
Q ss_pred cccccCCCCCCCCCC--chhhHHHHHHhCCCEEEEEcccccCC---------CCh--HHHHHHHHHHHHcceEecCCCce
Q 003769 652 RTKKRSRDVELGCCS--YIERLGLALNENPHRVFFMEDLDDHK---------VDS--CYCQKGLKQAIENGCIALADGEI 718 (796)
Q Consensus 652 ~~~k~~~~~~~~~~~--~~~~L~eavr~~P~~Vvl~deieka~---------~~~--~~v~~~l~q~~d~G~l~d~~G~~ 718 (796)
+| |.|.+ .+..+....+.+.-+||||||||... .+. ..+++.||+.||.-
T Consensus 253 --sk------~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~--------- 315 (437)
T 4b4t_L 253 --DK------YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF--------- 315 (437)
T ss_dssp --CS------SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS---------
T ss_pred --cc------cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc---------
Confidence 11 33332 23467777788888999999999531 122 12455667767531
Q ss_pred ecCCcEEEEeeCCCC
Q 003769 719 VPLKDSIIIFSCDSL 733 (796)
Q Consensus 719 v~~~n~IiilTsn~~ 733 (796)
-+..+.+||+|||--
T Consensus 316 ~~~~~vivI~ATNrp 330 (437)
T 4b4t_L 316 DNLGQTKIIMATNRP 330 (437)
T ss_dssp SCTTSSEEEEEESST
T ss_pred cCCCCeEEEEecCCc
Confidence 123567999999963
No 116
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.36 E-value=2.8e-07 Score=100.27 Aligned_cols=135 Identities=14% Similarity=0.200 Sum_probs=90.0
Q ss_pred cCCCCCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCC--------CCCceEEecCCCCc-
Q 003769 577 RKAVVPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGS--------HSNNFTNLSSSQSR- 647 (796)
Q Consensus 577 ~~~~v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~--------~~~~~i~~dms~~~- 647 (796)
.. ++|+++.+..+...+..+....+...++|.||.| +|||.+|+++++.+... . ..++.++++...
T Consensus 20 ~~--l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G--~GKT~la~~l~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~ 94 (384)
T 2qby_B 20 KE--IPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTG--TGKTFVSKYIFNEIEEVKKEDEEYKD-VKQAYVNCREVGG 94 (384)
T ss_dssp SS--CTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTT--SSHHHHHHHHHHHHHHHHHHSSSSTT-CEEEEEEHHHHCS
T ss_pred CC--CCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCC--CCHHHHHHHHHHHHHHHhhhhcCCCC-ceEEEEECccCCC
Confidence 77 9999999999999998776655556899999999 99999999999988432 3 568888876431
Q ss_pred cccc---c-ccccCCC-CCCCCCC---chhhHHHHHHhCCCEEEEEcccccCCCChHH-HHHH-HHHHHHcceEecCCCc
Q 003769 648 QDDC---R-TKKRSRD-VELGCCS---YIERLGLALNENPHRVFFMEDLDDHKVDSCY-CQKG-LKQAIENGCIALADGE 717 (796)
Q Consensus 648 ~~~~---~-~~k~~~~-~~~~~~~---~~~~L~eavr~~P~~Vvl~deieka~~~~~~-v~~~-l~q~~d~G~l~d~~G~ 717 (796)
.... . .....+. +++.|.. ....+.+.++.++. ||+||||+.. .. . .++. +...++..
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l--~~-~~~~~~~l~~l~~~~-------- 162 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTL--VK-RRGGDIVLYQLLRSD-------- 162 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHH--HH-STTSHHHHHHHHTSS--------
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHh--cc-CCCCceeHHHHhcCC--------
Confidence 1000 0 0011011 1122222 23566677777666 9999999987 43 2 2444 44444322
Q ss_pred eecCCcEEEEeeCCC
Q 003769 718 IVPLKDSIIIFSCDS 732 (796)
Q Consensus 718 ~v~~~n~IiilTsn~ 732 (796)
.+.+||+|||.
T Consensus 163 ----~~~~iI~~t~~ 173 (384)
T 2qby_B 163 ----ANISVIMISND 173 (384)
T ss_dssp ----SCEEEEEECSS
T ss_pred ----cceEEEEEECC
Confidence 68899999874
No 117
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.34 E-value=1.4e-06 Score=94.48 Aligned_cols=60 Identities=22% Similarity=0.187 Sum_probs=46.8
Q ss_pred CCCcchHHHHHHHHHHHhhccC-CCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCC
Q 003769 581 VPWQKEIMPEIARTILECRSKK-EQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSS 644 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~-~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms 644 (796)
++||++++..+...+...+..+ +...+||.||+| +|||.+|+++|+.+- .. ..++.+...
T Consensus 46 ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppG--tGKT~la~~la~~l~-~~-~~~~~~~~~ 106 (368)
T 3uk6_A 46 MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPG--TGKTAIAMGMAQALG-PD-TPFTAIAGS 106 (368)
T ss_dssp EESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTT--SSHHHHHHHHHHHHC-SS-CCEEEEEGG
T ss_pred ccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--CCHHHHHHHHHHHhc-cc-CCcccccch
Confidence 8999999888777666666633 446788999999 999999999999984 33 467776654
No 118
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.34 E-value=1.6e-06 Score=94.24 Aligned_cols=141 Identities=9% Similarity=0.062 Sum_probs=94.2
Q ss_pred cCCCCCCcchHHHHHHHHHHHhhccCCCe--EEEEecCCCCCchHHHHHHHHHHHHcCC-CCCceEEecCCCCccccc--
Q 003769 577 RKAVVPWQKEIMPEIARTILECRSKKEQT--WLLFLGADDHNHGKEKIAREIAKVVFGS-HSNNFTNLSSSQSRQDDC-- 651 (796)
Q Consensus 577 ~~~~v~gQ~~av~~ia~~i~~~rs~~~~~--~~lf~Gp~g~~vGKt~lAk~LA~~~fg~-~~~~~i~~dms~~~~~~~-- 651 (796)
.. ++|+++.+..+...+.......+.. .++|.||.| +|||.+++++++.+... . ..++.++++.......
T Consensus 17 ~~--l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G--~GKTtl~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~ 91 (389)
T 1fnn_A 17 KR--LPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPG--TGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAII 91 (389)
T ss_dssp SC--CTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTT--SSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHH
T ss_pred CC--CCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCC--CCHHHHHHHHHHHHhhhcC-eeEEEEeCccCCCHHHHH
Confidence 56 8999999999999988776544444 788999999 99999999999999765 3 5688888764421111
Q ss_pred -cccccCCC-CCCCCCC---chhhHHHHHHhC-CCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEE
Q 003769 652 -RTKKRSRD-VELGCCS---YIERLGLALNEN-PHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSI 725 (796)
Q Consensus 652 -~~~k~~~~-~~~~~~~---~~~~L~eavr~~-P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~I 725 (796)
......+. .+..+.. ..+.+.+.+... ...||+|||++.. ++ .++..|++.+++..- ..-.+..
T Consensus 92 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l--~~-~~~~~L~~~~~~~~~-------~~~~~~~ 161 (389)
T 1fnn_A 92 GEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL--AP-DILSTFIRLGQEADK-------LGAFRIA 161 (389)
T ss_dssp HHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS--CH-HHHHHHHHHTTCHHH-------HSSCCEE
T ss_pred HHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc--ch-HHHHHHHHHHHhCCC-------CCcCCEE
Confidence 00111111 1111211 123555555554 3679999999999 99 999999999865310 0013667
Q ss_pred EEeeCCC
Q 003769 726 IIFSCDS 732 (796)
Q Consensus 726 iilTsn~ 732 (796)
||++||.
T Consensus 162 iI~~~~~ 168 (389)
T 1fnn_A 162 LVIVGHN 168 (389)
T ss_dssp EEEEESS
T ss_pred EEEEECC
Confidence 8887763
No 119
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.33 E-value=2.3e-06 Score=102.61 Aligned_cols=61 Identities=13% Similarity=0.087 Sum_probs=54.8
Q ss_pred hccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHhhcCCCChhhHHHHHHHHH
Q 003769 11 ALTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKALELCFN 76 (796)
Q Consensus 11 rfT~~A~~vL~~A~~~Ar~~gh~~VtpeHLLlaLL~~~~g~l~~iL~~~~gi~~~~d~~aL~~~l~ 76 (796)
.||+.+.++|+.|..+|+..|+.+|+++|||+||+.++++.+..+|.. .|+ +. +.+...+.
T Consensus 79 ~~s~~~~~vl~~A~~~a~~~~~~~I~~ehlLlall~~~~~~a~~~L~~-~gi-~~---~~l~~~i~ 139 (758)
T 1r6b_X 79 QPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRK-HEV-SR---LDVVNFIS 139 (758)
T ss_dssp EECHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHTTCTTCHHHHHHHH-TTC-CH---HHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHcCCCEeeHHHHHHHHhccccchHHHHHHH-cCC-CH---HHHHHHHH
Confidence 599999999999999999999999999999999999888989999999 999 76 55555443
No 120
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.31 E-value=2.4e-06 Score=95.96 Aligned_cols=126 Identities=14% Similarity=0.115 Sum_probs=87.1
Q ss_pred CCCcchHHHHHHHHHHHhhc---------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccc
Q 003769 581 VPWQKEIMPEIARTILECRS---------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDC 651 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs---------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~ 651 (796)
|.|.+++...|-..|..--. -+|.--+||.||+| +|||.+||++|..+ | -+|+++++++.-
T Consensus 174 igGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPG--tGKT~lakAiA~~~-~---~~~~~v~~~~l~---- 243 (428)
T 4b4t_K 174 VGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPG--TGKTMLVKAVANST-K---AAFIRVNGSEFV---- 243 (428)
T ss_dssp SCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTT--TTHHHHHHHHHHHH-T---CEEEEEEGGGTC----
T ss_pred hccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCC--CCHHHHHHHHHHHh-C---CCeEEEecchhh----
Confidence 78889998888888865321 24444577999999 99999999999998 4 459999987541
Q ss_pred cccccCCCCCCCCC--CchhhHHHHHHhCCCEEEEEcccccC---------CCCh--HHHHHHHHHHHHcceEecCCCce
Q 003769 652 RTKKRSRDVELGCC--SYIERLGLALNENPHRVFFMEDLDDH---------KVDS--CYCQKGLKQAIENGCIALADGEI 718 (796)
Q Consensus 652 ~~~k~~~~~~~~~~--~~~~~L~eavr~~P~~Vvl~deieka---------~~~~--~~v~~~l~q~~d~G~l~d~~G~~ 718 (796)
++ |.|. ..+..+.+..+++--+||||||||.. +.+. ..+.+-||+.||.=
T Consensus 244 --~~------~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~--------- 306 (428)
T 4b4t_K 244 --HK------YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF--------- 306 (428)
T ss_dssp --CS------SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS---------
T ss_pred --cc------ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC---------
Confidence 11 2232 22356777778888899999999832 0122 13566677777531
Q ss_pred ecCCcEEEEeeCCCC
Q 003769 719 VPLKDSIIIFSCDSL 733 (796)
Q Consensus 719 v~~~n~IiilTsn~~ 733 (796)
-+..+.+||+|||.-
T Consensus 307 ~~~~~v~vI~aTN~~ 321 (428)
T 4b4t_K 307 DQSTNVKVIMATNRA 321 (428)
T ss_dssp CSSCSEEEEEEESCS
T ss_pred CCCCCEEEEEecCCh
Confidence 123568999999954
No 121
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.31 E-value=2.1e-06 Score=90.76 Aligned_cols=134 Identities=7% Similarity=-0.009 Sum_probs=85.2
Q ss_pred ChHHHHHHHHHHhh-ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHH
Q 003769 192 DSDDVMSVLNALIN-KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSC 270 (796)
Q Consensus 192 r~~ei~~vi~~L~r-~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~ 270 (796)
+++.+..+.+.+.. +..+++|+||||+|||++++.+++.+.... .+..++.++.+.... . ..++++++
T Consensus 26 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~~~~--~----~~i~~~~~ 94 (323)
T 1sxj_B 26 NKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRS-----YADGVLELNASDDRG--I----DVVRNQIK 94 (323)
T ss_dssp CTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-----HHHHEEEECTTSCCS--H----HHHHTHHH
T ss_pred CHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-----ccCCEEEecCccccC--h----HHHHHHHH
Confidence 78888888888876 656799999999999999999999875321 123567776543221 2 23444555
Q ss_pred HHHhc-----cCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHH
Q 003769 271 HVKSY-----MGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYT 345 (796)
Q Consensus 271 ~v~~~-----~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~ 345 (796)
.+... .+++.|+||||+|.+... . .+. |..++... .+...+|.+|+..
T Consensus 95 ~~~~~~~~~~~~~~~viiiDe~~~l~~~------------------~---~~~-L~~~le~~--~~~~~~il~~~~~--- 147 (323)
T 1sxj_B 95 HFAQKKLHLPPGKHKIVILDEADSMTAG------------------A---QQA-LRRTMELY--SNSTRFAFACNQS--- 147 (323)
T ss_dssp HHHHBCCCCCTTCCEEEEEESGGGSCHH------------------H---HHT-THHHHHHT--TTTEEEEEEESCG---
T ss_pred HHHhccccCCCCCceEEEEECcccCCHH------------------H---HHH-HHHHHhcc--CCCceEEEEeCCh---
Confidence 44410 034789999999988653 1 122 44444221 4567788887652
Q ss_pred HhhhcCccccccccceecccCC
Q 003769 346 RCKAGHPSLENMWKLHPFTIPV 367 (796)
Q Consensus 346 k~~~~dpaLerrf~lq~V~vp~ 367 (796)
-...|++.+|+. .+.++.
T Consensus 148 --~~l~~~l~sr~~--~i~~~~ 165 (323)
T 1sxj_B 148 --NKIIEPLQSQCA--ILRYSK 165 (323)
T ss_dssp --GGSCHHHHTTSE--EEECCC
T ss_pred --hhchhHHHhhce--EEeecC
Confidence 145678888754 555554
No 122
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.30 E-value=5.9e-07 Score=101.63 Aligned_cols=100 Identities=18% Similarity=0.271 Sum_probs=67.3
Q ss_pred CCCcchHH---HHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccC
Q 003769 581 VPWQKEIM---PEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRS 657 (796)
Q Consensus 581 v~gQ~~av---~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~ 657 (796)
|+||++++ ..+...|...+ ..++||.||+| +|||.+|+.||+.+ + ..|+.++.....
T Consensus 28 ivGq~~~~~~~~~L~~~i~~~~----~~~vLL~GppG--tGKTtlAr~ia~~~-~---~~f~~l~a~~~~---------- 87 (447)
T 3pvs_A 28 YIGQQHLLAAGKPLPRAIEAGH----LHSMILWGPPG--TGKTTLAEVIARYA-N---ADVERISAVTSG---------- 87 (447)
T ss_dssp CCSCHHHHSTTSHHHHHHHHTC----CCEEEEECSTT--SSHHHHHHHHHHHT-T---CEEEEEETTTCC----------
T ss_pred hCCcHHHHhchHHHHHHHHcCC----CcEEEEECCCC--CcHHHHHHHHHHHh-C---CCeEEEEeccCC----------
Confidence 89999998 66666665432 26899999999 99999999999987 3 447777654221
Q ss_pred CCCCCCCCCchhhHHHHH----HhCCCEEEEEcccccCCCChHHHHHHHHHHHHcce
Q 003769 658 RDVELGCCSYIERLGLAL----NENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGC 710 (796)
Q Consensus 658 ~~~~~~~~~~~~~L~eav----r~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~ 710 (796)
...+..+.+.. ......|||||||+.. .. ..++.|++.+++|.
T Consensus 88 -------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l--~~-~~q~~LL~~le~~~ 134 (447)
T 3pvs_A 88 -------VKEIREAIERARQNRNAGRRTILFVDEVHRF--NK-SQQDAFLPHIEDGT 134 (447)
T ss_dssp -------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC---------CCHHHHHTTS
T ss_pred -------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhh--CH-HHHHHHHHHHhcCc
Confidence 11111122222 2346789999999999 98 99999999999864
No 123
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.30 E-value=1.5e-06 Score=94.09 Aligned_cols=116 Identities=21% Similarity=0.310 Sum_probs=80.0
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCC-CCceEEecCCCCccccccccccCCC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSH-SNNFTNLSSSQSRQDDCRTKKRSRD 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~-~~~~i~~dms~~~~~~~~~~k~~~~ 659 (796)
++||++++..+...|..- +... ++|.||.| +|||.+|+++|+.+++.. ...++.++.+...
T Consensus 27 ~~g~~~~~~~L~~~i~~g---~~~~-~ll~Gp~G--~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~------------ 88 (340)
T 1sxj_C 27 VYGQNEVITTVRKFVDEG---KLPH-LLFYGPPG--TGKTSTIVALAREIYGKNYSNMVLELNASDDR------------ 88 (340)
T ss_dssp CCSCHHHHHHHHHHHHTT---CCCC-EEEECSSS--SSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC------------
T ss_pred hcCcHHHHHHHHHHHhcC---CCce-EEEECCCC--CCHHHHHHHHHHHHcCCCccceEEEEcCcccc------------
Confidence 689999999888777632 2222 89999999 999999999999998753 0124445543210
Q ss_pred CCCCCCCchhhHHHHHH--h----CCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 660 VELGCCSYIERLGLALN--E----NPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 660 ~~~~~~~~~~~L~eavr--~----~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
|...+..+...+. . ..+.|+++||++.. .. +.++.|+..+++.. .+++||++||.
T Consensus 89 ----~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l--~~-~~~~~L~~~le~~~-----------~~~~~il~~n~ 149 (340)
T 1sxj_C 89 ----GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAM--TN-AAQNALRRVIERYT-----------KNTRFCVLANY 149 (340)
T ss_dssp ----SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGS--CH-HHHHHHHHHHHHTT-----------TTEEEEEEESC
T ss_pred ----cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCC--CH-HHHHHHHHHHhcCC-----------CCeEEEEEecC
Confidence 0001111111111 1 23799999999999 99 99999999998741 56788888874
No 124
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.30 E-value=2.4e-06 Score=95.68 Aligned_cols=126 Identities=15% Similarity=0.177 Sum_probs=84.8
Q ss_pred CCCcchHHHHHHHHHHHh-hc--------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccc
Q 003769 581 VPWQKEIMPEIARTILEC-RS--------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDC 651 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~-rs--------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~ 651 (796)
|-|.++++..|-..|..- +. -+|.--+||.||+| +|||.+||+||..+ | -+|+.++.++..
T Consensus 184 IgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPG--TGKTlLAkAiA~e~-~---~~fi~v~~s~l~---- 253 (437)
T 4b4t_I 184 IGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPG--TGKTLLAKAVANQT-S---ATFLRIVGSELI---- 253 (437)
T ss_dssp TCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTT--TTHHHHHHHHHHHH-T---CEEEEEESGGGC----
T ss_pred cCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCC--chHHHHHHHHHHHh-C---CCEEEEEHHHhh----
Confidence 788888888888888652 21 34445577999999 99999999999998 4 459999887541
Q ss_pred cccccCCCCCCCCCC--chhhHHHHHHhCCCEEEEEcccccCC---------CCh--HHHHHHHHHHHHcceEecCCCce
Q 003769 652 RTKKRSRDVELGCCS--YIERLGLALNENPHRVFFMEDLDDHK---------VDS--CYCQKGLKQAIENGCIALADGEI 718 (796)
Q Consensus 652 ~~~k~~~~~~~~~~~--~~~~L~eavr~~P~~Vvl~deieka~---------~~~--~~v~~~l~q~~d~G~l~d~~G~~ 718 (796)
++ |.|.+ .+..+.+..+++--+||||||||... -+. ..+++.||+.+|. . +
T Consensus 254 --sk------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg-~--~----- 317 (437)
T 4b4t_I 254 --QK------YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG-F--D----- 317 (437)
T ss_dssp --CS------SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH-C--C-----
T ss_pred --hc------cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC-c--C-----
Confidence 11 22222 22466777778877999999999431 122 1244455555552 1 1
Q ss_pred ecCCcEEEEeeCCCC
Q 003769 719 VPLKDSIIIFSCDSL 733 (796)
Q Consensus 719 v~~~n~IiilTsn~~ 733 (796)
+-.+.|||+|||.-
T Consensus 318 -~~~~ViVIaATNrp 331 (437)
T 4b4t_I 318 -DRGDVKVIMATNKI 331 (437)
T ss_dssp -CSSSEEEEEEESCS
T ss_pred -CCCCEEEEEeCCCh
Confidence 12578999999963
No 125
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=98.29 E-value=1.3e-06 Score=83.67 Aligned_cols=65 Identities=9% Similarity=0.080 Sum_probs=60.0
Q ss_pred hhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHhhcCCCChhhHHHHHHHHHHHh
Q 003769 10 QALTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKALELCFNVAL 79 (796)
Q Consensus 10 erfT~~A~~vL~~A~~~Ar~~gh~~VtpeHLLlaLL~~~~g~l~~iL~~~~gi~~~~d~~aL~~~l~~~L 79 (796)
-.||+.+.++|..|..+|+++||.+|+++|||+||+.++++.+.++|++ +|+ +. +.|+..+...+
T Consensus 80 ~~~s~~~~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~~-~gv-~~---~~l~~~l~~~~ 144 (146)
T 3fh2_A 80 IPFTPRAKKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLVK-LGA-DL---PRVRQQVIQLL 144 (146)
T ss_dssp CCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHHH-HTC-CH---HHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHHH-cCC-CH---HHHHHHHHHHh
Confidence 3599999999999999999999999999999999999888999999999 999 76 88888887665
No 126
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.28 E-value=2.9e-06 Score=95.83 Aligned_cols=126 Identities=16% Similarity=0.151 Sum_probs=84.1
Q ss_pred CCCcchHHHHHHHHHHHh-hc--------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccc
Q 003769 581 VPWQKEIMPEIARTILEC-RS--------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDC 651 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~-rs--------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~ 651 (796)
|.|.+++...|-+.|..- +. -+|.--+||.||+| +|||.+||+||..+ | -.|+.++.++..
T Consensus 211 IgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPG--TGKTlLAkAiA~e~-~---~~fi~vs~s~L~---- 280 (467)
T 4b4t_H 211 VGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPG--TGKTLCARAVANRT-D---ATFIRVIGSELV---- 280 (467)
T ss_dssp CTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTT--SSHHHHHHHHHHHH-T---CEEEEEEGGGGC----
T ss_pred hccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCC--CcHHHHHHHHHhcc-C---CCeEEEEhHHhh----
Confidence 788888888887777542 11 34555677999999 99999999999998 4 459999887541
Q ss_pred cccccCCCCCCCCCC--chhhHHHHHHhCCCEEEEEcccccCCC---------Ch--HHHHHHHHHHHHcceEecCCCce
Q 003769 652 RTKKRSRDVELGCCS--YIERLGLALNENPHRVFFMEDLDDHKV---------DS--CYCQKGLKQAIENGCIALADGEI 718 (796)
Q Consensus 652 ~~~k~~~~~~~~~~~--~~~~L~eavr~~P~~Vvl~deieka~~---------~~--~~v~~~l~q~~d~G~l~d~~G~~ 718 (796)
++ |.|.+ .+..+.+..+.+--+||||||||...- +. ..+++.||+-||.-
T Consensus 281 --sk------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~--------- 343 (467)
T 4b4t_H 281 --QK------YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF--------- 343 (467)
T ss_dssp --CC------SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS---------
T ss_pred --cc------cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc---------
Confidence 11 33332 224566667777779999999995411 11 02445566666521
Q ss_pred ecCCcEEEEeeCCCC
Q 003769 719 VPLKDSIIIFSCDSL 733 (796)
Q Consensus 719 v~~~n~IiilTsn~~ 733 (796)
-+-.+.+||+|||.-
T Consensus 344 ~~~~~ViVIaATNrp 358 (467)
T 4b4t_H 344 DPRGNIKVMFATNRP 358 (467)
T ss_dssp CCTTTEEEEEECSCT
T ss_pred CCCCcEEEEeCCCCc
Confidence 123578999999953
No 127
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.27 E-value=6.6e-07 Score=96.21 Aligned_cols=132 Identities=8% Similarity=0.044 Sum_probs=79.0
Q ss_pred ChHHHHHHHHHHhhccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeeccc------ccc-----cchHH
Q 003769 192 DSDDVMSVLNALINKKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFS------FRN-----QSKGE 260 (796)
Q Consensus 192 r~~ei~~vi~~L~r~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~------l~a-----~~rge 260 (796)
+++.++.+...+. .+++++|+||||||||++++.++..+. ..++.++... +.. ...|.
T Consensus 32 ~~~~~~~l~~~l~-~~~~vll~G~pGtGKT~la~~la~~~~----------~~~~~i~~~~~~~~~~l~g~~~~~~~~~~ 100 (331)
T 2r44_A 32 QKYMINRLLIGIC-TGGHILLEGVPGLAKTLSVNTLAKTMD----------LDFHRIQFTPDLLPSDLIGTMIYNQHKGN 100 (331)
T ss_dssp CHHHHHHHHHHHH-HTCCEEEESCCCHHHHHHHHHHHHHTT----------CCEEEEECCTTCCHHHHHEEEEEETTTTE
T ss_pred cHHHHHHHHHHHH-cCCeEEEECCCCCcHHHHHHHHHHHhC----------CCeEEEecCCCCChhhcCCceeecCCCCc
Confidence 6666776666666 477999999999999999999998752 3455555421 111 00011
Q ss_pred HHHHHHHHHHHHHhccCC---CEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhh----c-C----
Q 003769 261 VEQKLVELSCHVKSYMGR---GIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFE----I-G---- 328 (796)
Q Consensus 261 ~E~rl~~l~~~v~~~~~~---~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~----~-~---- 328 (796)
+ ... .+ +.||||||++.+.+. .. +. |..++.. + |
T Consensus 101 ~-----------~~~-~g~l~~~vl~iDEi~~~~~~------------------~~---~~-Ll~~l~~~~~~~~g~~~~ 146 (331)
T 2r44_A 101 F-----------EVK-KGPVFSNFILADEVNRSPAK------------------VQ---SA-LLECMQEKQVTIGDTTYP 146 (331)
T ss_dssp E-----------EEE-ECTTCSSEEEEETGGGSCHH------------------HH---HH-HHHHHHHSEEEETTEEEE
T ss_pred e-----------Eec-cCcccccEEEEEccccCCHH------------------HH---HH-HHHHHhcCceeeCCEEEE
Confidence 0 000 11 269999999986543 11 11 3333311 0 0
Q ss_pred CCCcEEEEEecChHHHHHhhhcCccccccccceecccCCCC
Q 003769 329 ESERVWIMGIASFQTYTRCKAGHPSLENMWKLHPFTIPVGS 369 (796)
Q Consensus 329 ~~G~l~~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp~~~ 369 (796)
....+++|+++++.+|......+++|-+||.+ .+.++.|+
T Consensus 147 ~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~-~i~i~~p~ 186 (331)
T 2r44_A 147 LDNPFLVLATQNPVEQEGTYPLPEAQVDRFMM-KIHLTYLD 186 (331)
T ss_dssp CCSSCEEEEEECTTCCSCCCCCCHHHHTTSSE-EEECCCCC
T ss_pred CCCCEEEEEecCCCcccCcccCCHHHHhheeE-EEEcCCCC
Confidence 13457889888877654333578999999964 34554443
No 128
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.27 E-value=4.6e-06 Score=91.44 Aligned_cols=100 Identities=8% Similarity=0.045 Sum_probs=62.5
Q ss_pred ChHHHHHHHHHH-hh-------ccCceEE--EcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc------
Q 003769 192 DSDDVMSVLNAL-IN-------KKRNTVI--VGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN------ 255 (796)
Q Consensus 192 r~~ei~~vi~~L-~r-------~k~n~vL--vGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a------ 255 (796)
|++|+..+.+.| .+ ..++++| +|+||+|||++++.++..+.... +..-.+..++.++......
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAA-AKEGLTVKQAYVNAFNAPNLYTILS 105 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHH-HHTTCCEEEEEEEGGGCCSHHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHH-hccCCceeEEEEECCCCCCHHHHHH
Confidence 999999999998 53 2345677 79999999999999998875310 0000134567776422110
Q ss_pred c----------chH-HHHHHHHHHHHHHHhccCCCEEEEEcchhhhhhh
Q 003769 256 Q----------SKG-EVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 256 ~----------~rg-e~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~ 293 (796)
. ..+ ..++-+..+.+.+... ++++||||||+|++...
T Consensus 106 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~llvlDe~~~l~~~ 153 (412)
T 1w5s_A 106 LIVRQTGYPIQVRGAPALDILKALVDNLYVE-NHYLLVILDEFQSMLSS 153 (412)
T ss_dssp HHHHHHTCCCCCTTCCHHHHHHHHHHHHHHH-TCEEEEEEESTHHHHSC
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHHhc-CCeEEEEEeCHHHHhhc
Confidence 0 001 1222234444444433 56899999999999753
No 129
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=98.25 E-value=1e-06 Score=84.33 Aligned_cols=64 Identities=11% Similarity=0.092 Sum_probs=58.2
Q ss_pred hhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 003769 10 QALTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKALELCFNVA 78 (796)
Q Consensus 10 erfT~~A~~vL~~A~~~Ar~~gh~~VtpeHLLlaLL~~~~g~l~~iL~~~~gi~~~~d~~aL~~~l~~~ 78 (796)
-.||+.+.++|..|..+|+++|+.+|+++|||+||+.++++.+.++|++ +|+ +. +.++..+...
T Consensus 80 ~~~s~~~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL~~-~gv-~~---~~l~~~i~~~ 143 (145)
T 3fes_A 80 IVLSPRSKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILNY-AGV-ND---RTLAQLTIDM 143 (145)
T ss_dssp CEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHHHH-HTC-HH---HHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHHHH-cCC-CH---HHHHHHHHHH
Confidence 3599999999999999999999999999999999999888999999999 999 66 8888777654
No 130
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.25 E-value=2.7e-06 Score=93.75 Aligned_cols=138 Identities=19% Similarity=0.217 Sum_probs=96.2
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCC-
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD- 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~- 659 (796)
++|+..++..+...+.+... ....+|+.|++| +||+.+|+.+...-. .. ..|+.+|++.. ++....+.+.|.
T Consensus 131 ~ig~s~~~~~~~~~~~~~a~--~~~~vli~GesG--tGKe~lAr~ih~~s~-r~-~~fv~vnc~~~-~~~~~~~~lfg~~ 203 (368)
T 3dzd_A 131 FVGEHPKILEIKRLIPKIAK--SKAPVLITGESG--TGKEIVARLIHRYSG-RK-GAFVDLNCASI-PQELAESELFGHE 203 (368)
T ss_dssp CCCCSHHHHHHHHHHHHHHT--SCSCEEEECCTT--SSHHHHHHHHHHHHC-CC-SCEEEEESSSS-CTTTHHHHHHEEC
T ss_pred ccccchHHHHHHhhhhhhhc--cchhheEEeCCC--chHHHHHHHHHHhcc-cc-CCcEEEEcccC-ChHHHHHHhcCcc
Confidence 78888888888777765533 334588999999 999999999998774 33 45999999966 233222222221
Q ss_pred -CCCCCCC--chhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 660 -VELGCCS--YIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 660 -~~~~~~~--~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
..|.|.. ..|.+..| ....+|||||+.. ++ .+|..|++++++|.++.-.|.+.-.-|+-||.+||.
T Consensus 204 ~g~~tga~~~~~g~~~~a----~~gtlfldei~~l--~~-~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~ 272 (368)
T 3dzd_A 204 KGAFTGALTRKKGKLELA----DQGTLFLDEVGEL--DQ-RVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNK 272 (368)
T ss_dssp SCSSSSCCCCEECHHHHT----TTSEEEEETGGGS--CH-HHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESS
T ss_pred ccccCCcccccCChHhhc----CCCeEEecChhhC--CH-HHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCC
Confidence 1133331 11334322 3468999999999 99 999999999999999976664444446668888873
No 131
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.25 E-value=1.2e-06 Score=100.13 Aligned_cols=124 Identities=18% Similarity=0.206 Sum_probs=86.4
Q ss_pred CCCcchHHHHHHHHHHHhhc---------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccc
Q 003769 581 VPWQKEIMPEIARTILECRS---------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDC 651 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs---------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~ 651 (796)
|+|+++++..|-+.|..... .++...+||.||+| +|||.+|++||..+ + ..|+.+++++.. .
T Consensus 206 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppG--tGKT~lAraia~~~-~---~~fv~vn~~~l~-~-- 276 (489)
T 3hu3_A 206 IGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPG--TGKTLIARAVANET-G---AFFFLINGPEIM-S-- 276 (489)
T ss_dssp CCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTT--SSHHHHHHHHHHHC-S---SEEEEEEHHHHH-T--
T ss_pred cCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCC--CCHHHHHHHHHHHh-C---CCEEEEEchHhh-h--
Confidence 89999999999988865411 35556789999999 99999999999987 3 569999986431 1
Q ss_pred cccccCCCCCCCCC--CchhhHHHHHHhCCCEEEEEcccccC---------CCChHHHHHHHHHHHHcceEecCCCceec
Q 003769 652 RTKKRSRDVELGCC--SYIERLGLALNENPHRVFFMEDLDDH---------KVDSCYCQKGLKQAIENGCIALADGEIVP 720 (796)
Q Consensus 652 ~~~k~~~~~~~~~~--~~~~~L~eavr~~P~~Vvl~deieka---------~~~~~~v~~~l~q~~d~G~l~d~~G~~v~ 720 (796)
+ |.|. +....+.+..+.+..+||||||||.. +... .+++.|++.|+.-. .
T Consensus 277 ---~------~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~-~~~~~LL~~ld~~~---------~ 337 (489)
T 3hu3_A 277 ---K------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER-RIVSQLLTLMDGLK---------Q 337 (489)
T ss_dssp ---S------CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHH-HHHHHHHHHHHHSC---------T
T ss_pred ---h------hcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHH-HHHHHHHHHhhccc---------c
Confidence 1 1122 12223344445555699999999532 0134 68889999998421 1
Q ss_pred CCcEEEEeeCCC
Q 003769 721 LKDSIIIFSCDS 732 (796)
Q Consensus 721 ~~n~IiilTsn~ 732 (796)
-.+.+||.|||.
T Consensus 338 ~~~v~vIaaTn~ 349 (489)
T 3hu3_A 338 RAHVIVMAATNR 349 (489)
T ss_dssp TSCEEEEEEESC
T ss_pred CCceEEEEecCC
Confidence 247899999985
No 132
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.24 E-value=1.4e-06 Score=100.02 Aligned_cols=89 Identities=12% Similarity=0.125 Sum_probs=58.9
Q ss_pred ChHHHHHHHHHHhh-c-----------------cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccc
Q 003769 192 DSDDVMSVLNALIN-K-----------------KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSF 253 (796)
Q Consensus 192 r~~ei~~vi~~L~r-~-----------------k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l 253 (796)
+++.++.+.+.|.. . .++++|+||||||||++++.+|+.+ +..++.++.+.+
T Consensus 44 ~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----------~~~~i~in~s~~ 113 (516)
T 1sxj_A 44 NKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----------GYDILEQNASDV 113 (516)
T ss_dssp CHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----------TCEEEEECTTSC
T ss_pred CHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEeCCCc
Confidence 66666666666653 1 2678899999999999999999976 468999988766
Q ss_pred cccchHHHHHHHH---------HHHHHH----HhccCCCEEEEEcchhhhhhh
Q 003769 254 RNQSKGEVEQKLV---------ELSCHV----KSYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 254 ~a~~rge~E~rl~---------~l~~~v----~~~~~~~~ILfIDElh~l~~~ 293 (796)
...+. ++..++ .++..+ ... +.+.||||||+|.+...
T Consensus 114 ~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~vliIDEid~l~~~ 163 (516)
T 1sxj_A 114 RSKTL--LNAGVKNALDNMSVVGYFKHNEEAQNLN-GKHFVIIMDEVDGMSGG 163 (516)
T ss_dssp CCHHH--HHHTGGGGTTBCCSTTTTTC----CCSS-TTSEEEEECSGGGCCTT
T ss_pred chHHH--HHHHHHHHhccccHHHHHhhhhhhhhcc-CCCeEEEEECCCccchh
Confidence 54211 111111 111111 011 45799999999998753
No 133
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.24 E-value=6.9e-06 Score=84.98 Aligned_cols=126 Identities=17% Similarity=0.134 Sum_probs=81.7
Q ss_pred CCCcchHHHHHHHHHHHhhc--------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCcccccc
Q 003769 581 VPWQKEIMPEIARTILECRS--------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCR 652 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs--------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~ 652 (796)
|+|+++++..+...+...+. .++..-+||.||+| +|||.+|++||..+ + ..++.+++++.. +.
T Consensus 14 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~G--tGKT~la~~la~~~-~---~~~~~i~~~~~~-~~-- 84 (257)
T 1lv7_A 14 VAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPG--TGKTLLAKAIAGEA-K---VPFFTISGSDFV-EM-- 84 (257)
T ss_dssp SCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTT--SCHHHHHHHHHHHH-T---CCEEEECSCSST-TS--
T ss_pred hcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCC--CCHHHHHHHHHHHc-C---CCEEEEeHHHHH-HH--
Confidence 78888888888776654332 12233488999999 99999999999987 3 358899887542 11
Q ss_pred ccccCCCCCCCCC--CchhhHHHHHHhCCCEEEEEcccccCCC---------Ch--HHHHHHHHHHHHcceEecCCCcee
Q 003769 653 TKKRSRDVELGCC--SYIERLGLALNENPHRVFFMEDLDDHKV---------DS--CYCQKGLKQAIENGCIALADGEIV 719 (796)
Q Consensus 653 ~~k~~~~~~~~~~--~~~~~L~eavr~~P~~Vvl~deieka~~---------~~--~~v~~~l~q~~d~G~l~d~~G~~v 719 (796)
+.|. .....+.+..+....+|++|||||.... +. ....+.+++.++.-.
T Consensus 85 ---------~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------- 146 (257)
T 1lv7_A 85 ---------FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE--------- 146 (257)
T ss_dssp ---------CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC---------
T ss_pred ---------hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc---------
Confidence 1122 2234555566667779999999975311 11 035566666665311
Q ss_pred cCCcEEEEeeCCCC
Q 003769 720 PLKDSIIIFSCDSL 733 (796)
Q Consensus 720 ~~~n~IiilTsn~~ 733 (796)
+-.+.+||.|||..
T Consensus 147 ~~~~~~vI~~tn~~ 160 (257)
T 1lv7_A 147 GNEGIIVIAATNRP 160 (257)
T ss_dssp SSSCEEEEEEESCT
T ss_pred cCCCEEEEEeeCCc
Confidence 12468899999864
No 134
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.22 E-value=1.8e-06 Score=97.39 Aligned_cols=143 Identities=10% Similarity=0.056 Sum_probs=81.1
Q ss_pred HHHHHHHHhh--c-cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHH-HHHHHHH
Q 003769 196 VMSVLNALIN--K-KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQK-LVELSCH 271 (796)
Q Consensus 196 i~~vi~~L~r--~-k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~r-l~~l~~~ 271 (796)
....+..++. . .++++|+||||+|||++++.++..+... ..+.+++.++...+...+.+.+... +..+...
T Consensus 116 a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~-----~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~ 190 (440)
T 2z4s_A 116 AYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN-----EPDLRVMYITSEKFLNDLVDSMKEGKLNEFREK 190 (440)
T ss_dssp HHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHH-----CCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh-----CCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHH
Confidence 3334444444 2 5678899999999999999999987543 1246788888766544333333221 1122222
Q ss_pred HHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHH-HHHHHHHHhhhcCCCCcEEEEEecC-hHHHHHhhh
Q 003769 272 VKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEY-VVMEIKRLVFEIGESERVWIMGIAS-FQTYTRCKA 349 (796)
Q Consensus 272 v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~-~~~eLk~L~~~~~~~G~l~~IGatT-~~ey~k~~~ 349 (796)
.. ..+.||||||+|.+.+.. . ..+. ... +..+. ..|...+|++.. +.++ ..
T Consensus 191 ~~---~~~~vL~IDEi~~l~~~~-------~---------~q~~l~~~-l~~l~----~~~~~iIitt~~~~~~l---~~ 243 (440)
T 2z4s_A 191 YR---KKVDILLIDDVQFLIGKT-------G---------VQTELFHT-FNELH----DSGKQIVICSDREPQKL---SE 243 (440)
T ss_dssp HT---TTCSEEEEECGGGGSSCH-------H---------HHHHHHHH-HHHHH----TTTCEEEEEESSCGGGC---SS
T ss_pred hc---CCCCEEEEeCcccccCCh-------H---------HHHHHHHH-HHHHH----HCCCeEEEEECCCHHHH---HH
Confidence 21 157899999999987531 0 1111 111 22333 366666665544 2322 23
Q ss_pred cCccccccccc-eecccCCCCc
Q 003769 350 GHPSLENMWKL-HPFTIPVGSL 370 (796)
Q Consensus 350 ~dpaLerrf~l-q~V~vp~~~l 370 (796)
.+++|-+||.. +.+.++.++.
T Consensus 244 l~~~L~sR~~~g~~i~l~~p~~ 265 (440)
T 2z4s_A 244 FQDRLVSRFQMGLVAKLEPPDE 265 (440)
T ss_dssp CCHHHHHHHHSSBCCBCCCCCH
T ss_pred HHHHHHhhccCCeEEEeCCCCH
Confidence 67888888731 2445554443
No 135
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.22 E-value=4.8e-06 Score=94.87 Aligned_cols=124 Identities=15% Similarity=0.202 Sum_probs=83.9
Q ss_pred CCCcchHHHHHHHHHHHhhc---------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccc
Q 003769 581 VPWQKEIMPEIARTILECRS---------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDC 651 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs---------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~ 651 (796)
|.||++++..+-..+...+. .-|.+ +||.||+| +|||.+||++|... + ..|+.+++++.. +.
T Consensus 18 i~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~g-vLL~GppG--tGKT~Laraia~~~-~---~~f~~is~~~~~-~~- 88 (476)
T 2ce7_A 18 VGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKG-ILLVGPPG--TGKTLLARAVAGEA-N---VPFFHISGSDFV-EL- 88 (476)
T ss_dssp CCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSE-EEEECCTT--SSHHHHHHHHHHHH-T---CCEEEEEGGGTT-TC-
T ss_pred hCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCe-EEEECCCC--CCHHHHHHHHHHHc-C---CCeeeCCHHHHH-HH-
Confidence 88999998888887766543 23444 88999999 99999999999987 3 458888877552 11
Q ss_pred cccccCCCCCCCCCC--chhhHHHHHHhCCCEEEEEcccccCCC---------Ch--HHHHHHHHHHHHcceEecCCCce
Q 003769 652 RTKKRSRDVELGCCS--YIERLGLALNENPHRVFFMEDLDDHKV---------DS--CYCQKGLKQAIENGCIALADGEI 718 (796)
Q Consensus 652 ~~~k~~~~~~~~~~~--~~~~L~eavr~~P~~Vvl~deieka~~---------~~--~~v~~~l~q~~d~G~l~d~~G~~ 718 (796)
|.|.+ .+..+.+..+.+..+||||||||...- |+ ..+++-|+..+|. + +
T Consensus 89 ----------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~--~----~-- 150 (476)
T 2ce7_A 89 ----------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDG--F----D-- 150 (476)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHH--S----C--
T ss_pred ----------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhc--c----C--
Confidence 22221 123455556666679999999987511 11 1356777777762 1 1
Q ss_pred ecCCcEEEEeeCCC
Q 003769 719 VPLKDSIIIFSCDS 732 (796)
Q Consensus 719 v~~~n~IiilTsn~ 732 (796)
+-.+.+||.|||.
T Consensus 151 -~~~~viVIaaTn~ 163 (476)
T 2ce7_A 151 -SKEGIIVMAATNR 163 (476)
T ss_dssp -GGGTEEEEEEESC
T ss_pred -CCCCEEEEEecCC
Confidence 1247889999985
No 136
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.19 E-value=4.9e-06 Score=89.38 Aligned_cols=138 Identities=12% Similarity=0.070 Sum_probs=81.2
Q ss_pred ChHHHHHHHHHHhh-ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHH
Q 003769 192 DSDDVMSVLNALIN-KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSC 270 (796)
Q Consensus 192 r~~ei~~vi~~L~r-~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~ 270 (796)
+++.+..+...+.. ...+++|+||||+|||++++.++..+...+ .....++.++.+.... .+.+.+.+.....
T Consensus 42 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 115 (353)
T 1sxj_D 42 QDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD----LMKSRILELNASDERG--ISIVREKVKNFAR 115 (353)
T ss_dssp CCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHH----HHTTSEEEECSSSCCC--HHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCc----ccccceEEEccccccc--hHHHHHHHHHHhh
Confidence 66777777777766 557799999999999999999999875210 0123567777654322 2222222222221
Q ss_pred H-----------HHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEec
Q 003769 271 H-----------VKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIA 339 (796)
Q Consensus 271 ~-----------v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGat 339 (796)
. .... +...||||||++.+... .. +. |..++... .....+|.+|
T Consensus 116 ~~~~~~~~~~~~~~~~-~~~~vliiDE~~~l~~~------------------~~---~~-Ll~~le~~--~~~~~~il~~ 170 (353)
T 1sxj_D 116 LTVSKPSKHDLENYPC-PPYKIIILDEADSMTAD------------------AQ---SA-LRRTMETY--SGVTRFCLIC 170 (353)
T ss_dssp SCCCCCCTTHHHHSCC-CSCEEEEETTGGGSCHH------------------HH---HH-HHHHHHHT--TTTEEEEEEE
T ss_pred hcccccchhhcccCCC-CCceEEEEECCCccCHH------------------HH---HH-HHHHHHhc--CCCceEEEEe
Confidence 1 1111 34579999999988653 11 11 44444321 3445666666
Q ss_pred ChHHHHHhhhcCccccccccceecccCC
Q 003769 340 SFQTYTRCKAGHPSLENMWKLHPFTIPV 367 (796)
Q Consensus 340 T~~ey~k~~~~dpaLerrf~lq~V~vp~ 367 (796)
+... ...|+|.+|+. .+.++.
T Consensus 171 ~~~~-----~l~~~l~sR~~--~i~~~~ 191 (353)
T 1sxj_D 171 NYVT-----RIIDPLASQCS--KFRFKA 191 (353)
T ss_dssp SCGG-----GSCHHHHHHSE--EEECCC
T ss_pred Cchh-----hCcchhhccCc--eEEeCC
Confidence 5422 36788888864 455543
No 137
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.19 E-value=4.1e-06 Score=88.74 Aligned_cols=137 Identities=9% Similarity=0.052 Sum_probs=82.1
Q ss_pred ChHHHHHHHHHHhh-ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHH
Q 003769 192 DSDDVMSVLNALIN-KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSC 270 (796)
Q Consensus 192 r~~ei~~vi~~L~r-~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~ 270 (796)
+++.+..+...+.. +..+++|+||||+|||++++.++..+.... ....++.++.+.... ...+.+.+.+...
T Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 102 (327)
T 1iqp_A 30 QEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEN-----WRHNFLELNASDERG--INVIREKVKEFAR 102 (327)
T ss_dssp CHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGG-----HHHHEEEEETTCHHH--HHTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-----ccCceEEeeccccCc--hHHHHHHHHHHHh
Confidence 77888888877776 556799999999999999999999875321 123466666543221 1112222222221
Q ss_pred HHHhcc-CCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhh
Q 003769 271 HVKSYM-GRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKA 349 (796)
Q Consensus 271 ~v~~~~-~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~ 349 (796)
.. ... +++.||||||+|.+... . .+. |..++... .....+|.+|+... .
T Consensus 103 ~~-~~~~~~~~vliiDe~~~l~~~------------------~---~~~-L~~~le~~--~~~~~~i~~~~~~~-----~ 152 (327)
T 1iqp_A 103 TK-PIGGASFKIIFLDEADALTQD------------------A---QQA-LRRTMEMF--SSNVRFILSCNYSS-----K 152 (327)
T ss_dssp SC-CGGGCSCEEEEEETGGGSCHH------------------H---HHH-HHHHHHHT--TTTEEEEEEESCGG-----G
T ss_pred hC-CcCCCCCeEEEEeCCCcCCHH------------------H---HHH-HHHHHHhc--CCCCeEEEEeCCcc-----c
Confidence 10 000 35789999999988543 1 122 44444221 45678888876532 3
Q ss_pred cCccccccccceecccCC
Q 003769 350 GHPSLENMWKLHPFTIPV 367 (796)
Q Consensus 350 ~dpaLerrf~lq~V~vp~ 367 (796)
..|++.+|+. .+.++.
T Consensus 153 l~~~l~sr~~--~~~~~~ 168 (327)
T 1iqp_A 153 IIEPIQSRCA--IFRFRP 168 (327)
T ss_dssp SCHHHHHTEE--EEECCC
T ss_pred cCHHHHhhCc--EEEecC
Confidence 5677877754 455544
No 138
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.17 E-value=6.7e-06 Score=88.69 Aligned_cols=128 Identities=15% Similarity=0.181 Sum_probs=75.4
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCc-------------
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSR------------- 647 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~------------- 647 (796)
++||++++..+.+.+. +..+... ++|.||+| +|||++|+.||+.+++.. ..-+.++...+.
T Consensus 16 ~vg~~~~~~~l~~~~~--~~~~~~~-~ll~Gp~G--~GKTtl~~~la~~l~~~~-~g~i~~~~~~~~~~~~~~~~~~~~~ 89 (354)
T 1sxj_E 16 LSHNEELTNFLKSLSD--QPRDLPH-LLLYGPNG--TGKKTRCMALLESIFGPG-VYRLKIDVRQFVTASNRKLELNVVS 89 (354)
T ss_dssp CCSCHHHHHHHHTTTT--CTTCCCC-EEEECSTT--SSHHHHHHTHHHHHSCTT-CCC------------------CCEE
T ss_pred hcCCHHHHHHHHHHHh--hCCCCCe-EEEECCCC--CCHHHHHHHHHHHHcCCC-CCeEEecceeecccccccceeeeec
Confidence 7899988877665551 2233333 88999999 999999999999887765 333343321110
Q ss_pred cccccccccCCCCCCCCCC---chhhHHHHH-H-------------hCCCEEEEEcccccCCCChHHHHHHHHHHHHcce
Q 003769 648 QDDCRTKKRSRDVELGCCS---YIERLGLAL-N-------------ENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGC 710 (796)
Q Consensus 648 ~~~~~~~k~~~~~~~~~~~---~~~~L~eav-r-------------~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~ 710 (796)
...+ ..... . ..+.. .+..+.+.+ . ..++.||+|||++.. ++ ..++.|++.+++-
T Consensus 90 ~~~~--~~~~~-~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L--~~-~~~~~L~~~le~~- 161 (354)
T 1sxj_E 90 SPYH--LEITP-S-DMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL--TK-DAQAALRRTMEKY- 161 (354)
T ss_dssp CSSE--EEECC-C-----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS--CH-HHHHHHHHHHHHS-
T ss_pred ccce--EEecH-h-hcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc--CH-HHHHHHHHHHHhh-
Confidence 0000 00000 0 00111 122222222 2 236789999999998 99 9999999999873
Q ss_pred EecCCCceecCCcEEEEeeCCC
Q 003769 711 IALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 711 l~d~~G~~v~~~n~IiilTsn~ 732 (796)
-.+++||++|+.
T Consensus 162 ----------~~~~~~Il~t~~ 173 (354)
T 1sxj_E 162 ----------SKNIRLIMVCDS 173 (354)
T ss_dssp ----------TTTEEEEEEESC
T ss_pred ----------cCCCEEEEEeCC
Confidence 146788888874
No 139
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.15 E-value=1.6e-06 Score=91.49 Aligned_cols=139 Identities=8% Similarity=0.015 Sum_probs=82.4
Q ss_pred ChHHHHHHHHHHhh-ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHH
Q 003769 192 DSDDVMSVLNALIN-KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSC 270 (796)
Q Consensus 192 r~~ei~~vi~~L~r-~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~ 270 (796)
+++.+..+...+.. +..+++|+||||+|||++++.++..+.... .+..++.++.+.... ...+...++++..
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 94 (319)
T 2chq_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-----WRDNFIEMNASDERG--IDVVRHKIKEFAR 94 (319)
T ss_dssp CHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTC-----HHHHCEEEETTSTTC--TTTSSHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCc-----ccCCeEEEeCccccC--hHHHHHHHHHHHh
Confidence 66666666666665 556799999999999999999999875321 123567777654322 1111122222221
Q ss_pred HHHhccCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhhc
Q 003769 271 HVKSYMGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKAG 350 (796)
Q Consensus 271 ~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~~ 350 (796)
...-..+++.|+||||+|.+... ..+. |..++.. ..+...+|.+|+... ..
T Consensus 95 ~~~~~~~~~~vliiDe~~~l~~~---------------------~~~~-L~~~le~--~~~~~~~i~~~~~~~-----~l 145 (319)
T 2chq_A 95 TAPIGGAPFKIIFLDEADALTAD---------------------AQAA-LRRTMEM--YSKSCRFILSCNYVS-----RI 145 (319)
T ss_dssp SCCSSSCCCEEEEEETGGGSCHH---------------------HHHT-TGGGTSS--SSSSEEEEEEESCGG-----GS
T ss_pred cCCCCCCCceEEEEeCCCcCCHH---------------------HHHH-HHHHHHh--cCCCCeEEEEeCChh-----hc
Confidence 10000034789999999988543 1111 3334421 146688888887532 45
Q ss_pred CccccccccceecccCCC
Q 003769 351 HPSLENMWKLHPFTIPVG 368 (796)
Q Consensus 351 dpaLerrf~lq~V~vp~~ 368 (796)
.|+|.+|+. .+.++.+
T Consensus 146 ~~~l~sr~~--~i~~~~~ 161 (319)
T 2chq_A 146 IEPIQSRCA--VFRFKPV 161 (319)
T ss_dssp CHHHHTTCE--EEECCCC
T ss_pred chHHHhhCe--EEEecCC
Confidence 788888864 5555443
No 140
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.15 E-value=5e-06 Score=93.57 Aligned_cols=125 Identities=15% Similarity=0.162 Sum_probs=82.7
Q ss_pred CCCcchHHHHHHHHHHHh-hc--------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccc
Q 003769 581 VPWQKEIMPEIARTILEC-RS--------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDC 651 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~-rs--------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~ 651 (796)
|.|.++++..|-..|..- +. -+|.--+||.||+| +|||.+|+++|..+ | -.|+.++.++..
T Consensus 183 igGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPG--TGKTllAkAiA~e~-~---~~f~~v~~s~l~---- 252 (434)
T 4b4t_M 183 VGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPG--TGKTLLARACAAQT-N---ATFLKLAAPQLV---- 252 (434)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTT--SSHHHHHHHHHHHH-T---CEEEEEEGGGGC----
T ss_pred cCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCC--CCHHHHHHHHHHHh-C---CCEEEEehhhhh----
Confidence 788888888888776542 11 34445567999999 99999999999998 4 459999887441
Q ss_pred cccccCCCCCCCCCC--chhhHHHHHHhCCCEEEEEcccccCC---------CChHH---HHHHHHHHHHcceEecCCCc
Q 003769 652 RTKKRSRDVELGCCS--YIERLGLALNENPHRVFFMEDLDDHK---------VDSCY---CQKGLKQAIENGCIALADGE 717 (796)
Q Consensus 652 ~~~k~~~~~~~~~~~--~~~~L~eavr~~P~~Vvl~deieka~---------~~~~~---v~~~l~q~~d~G~l~d~~G~ 717 (796)
++ |.|.+ .+..+.+..+++--+||||||||... -+. . +++.||+.||. . .
T Consensus 253 --~~------~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~-~~~~~~~~lL~~ldg-~----~-- 316 (434)
T 4b4t_M 253 --QM------YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDR-EVQRTMLELLNQLDG-F----S-- 316 (434)
T ss_dssp --SS------CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTH-HHHHHHHHHHHHHTT-S----C--
T ss_pred --hc------ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCch-HHHHHHHHHHHHhhc-c----C--
Confidence 11 33322 22456666777777999999998320 012 3 34556666642 1 1
Q ss_pred eecCCcEEEEeeCCCC
Q 003769 718 IVPLKDSIIIFSCDSL 733 (796)
Q Consensus 718 ~v~~~n~IiilTsn~~ 733 (796)
+-.+.+||+|||.-
T Consensus 317 --~~~~ViVIaaTNrp 330 (434)
T 4b4t_M 317 --SDDRVKVLAATNRV 330 (434)
T ss_dssp --SSCSSEEEEECSSC
T ss_pred --CCCCEEEEEeCCCc
Confidence 12467899999964
No 141
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.14 E-value=1.1e-06 Score=94.42 Aligned_cols=27 Identities=7% Similarity=0.149 Sum_probs=24.3
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFE 232 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~ 232 (796)
...+++|+||||||||++++.++..+.
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 567899999999999999999999764
No 142
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=98.14 E-value=4.6e-06 Score=79.69 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=59.5
Q ss_pred hhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHhhcCCCChhhHHHHHHHHHHHhc
Q 003769 10 QALTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKALELCFNVALN 80 (796)
Q Consensus 10 erfT~~A~~vL~~A~~~Ar~~gh~~VtpeHLLlaLL~~~~g~l~~iL~~~~gi~~~~d~~aL~~~l~~~L~ 80 (796)
..||+.+.++|..|..+|+++||.+|+++|||+||+.++++.+..+|.. +|+ +. +.++..+....+
T Consensus 78 ~~~s~~~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~~~~a~~~L~~-~gi-~~---~~l~~~i~~~~g 143 (150)
T 2y1q_A 78 IHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNN-LGV-SL---NKARQQVLQLLG 143 (150)
T ss_dssp CEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHH-TTC-CH---HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCCCcHHHHHHHH-cCC-CH---HHHHHHHHHHHC
Confidence 3699999999999999999999999999999999998888888899999 999 76 888888776654
No 143
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.13 E-value=3.3e-06 Score=95.88 Aligned_cols=109 Identities=12% Similarity=0.193 Sum_probs=70.9
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCC-------CCCceEEecCCCCccccccc
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGS-------HSNNFTNLSSSQSRQDDCRT 653 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~-------~~~~~i~~dms~~~~~~~~~ 653 (796)
|+||++.+..+...+.+ +....+||.||+| +|||.+|+.||..+... . ..|+.+|++..
T Consensus 182 iiGr~~~i~~l~~~l~r----~~~~~~LL~G~pG--~GKT~la~~la~~l~~~~~p~~l~~-~~~~~l~~~~~------- 247 (468)
T 3pxg_A 182 VIGRSKEIQRVIEVLSR----RTKNNPVLIGEPG--VGKTAIAEGLAQQIINNEVPEILRD-KRVMTLDMGTK------- 247 (468)
T ss_dssp CCCCHHHHHHHHHHHHC----SSSCEEEEESCTT--TTTHHHHHHHHHHHHSSCSCTTTSS-CCEECC------------
T ss_pred ccCcHHHHHHHHHHHhc----cCCCCeEEECCCC--CCHHHHHHHHHHHHHhCCCChhhcC-CeEEEeeCCcc-------
Confidence 89999999988877654 2334679999999 99999999999998542 2 45777887611
Q ss_pred cccCCCCCCCCC--CchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCC
Q 003769 654 KKRSRDVELGCC--SYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 654 ~k~~~~~~~~~~--~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn 731 (796)
|.|. .....+.+.++..+..|+|+| . .. +.++.|++++++| +.+||.++|
T Consensus 248 --------~~g~~e~~~~~~~~~~~~~~~~iLfiD----~--~~-~a~~~L~~~L~~g-------------~v~vI~at~ 299 (468)
T 3pxg_A 248 --------YRGEFEDRLKKVMDEIRQAGNIILFID----A--AI-DASNILKPSLARG-------------ELQCIGATT 299 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC----C-----------CCCTTSS-------------SCEEEEECC
T ss_pred --------ccchHHHHHHHHHHHHHhcCCeEEEEe----C--ch-hHHHHHHHhhcCC-------------CEEEEecCC
Confidence 1111 223466777777888899999 5 66 8999999999876 345777776
No 144
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.11 E-value=1.9e-05 Score=85.38 Aligned_cols=140 Identities=11% Similarity=0.050 Sum_probs=82.9
Q ss_pred ChHHHHHHHHHHhh-cc-CceEEEcCCcccHHHHHHHHHHHHHcCCCCC--C------------CCCceEEEeecccccc
Q 003769 192 DSDDVMSVLNALIN-KK-RNTVIVGGNLAAIEGVIRGIIDQFERGQVPG--D------------LRYAQFISLPLFSFRN 255 (796)
Q Consensus 192 r~~ei~~vi~~L~r-~k-~n~vLvGepGvGKTaiv~~la~ri~~~~vp~--~------------L~~~~v~~l~~~~l~a 255 (796)
+++.+..+...+.. +. +.++|+||||+|||++++.++..+.....+. . .....++.++...-.
T Consensus 21 ~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 99 (373)
T 1jr3_A 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRT- 99 (373)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCSC-
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccccC-
Confidence 88888888888876 43 3467899999999999999999875321100 0 001123444432211
Q ss_pred cchHHHHHHHHHHHHHHHhcc--CCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcE
Q 003769 256 QSKGEVEQKLVELSCHVKSYM--GRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERV 333 (796)
Q Consensus 256 ~~rge~E~rl~~l~~~v~~~~--~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l 333 (796)
... .++++++.+.... +++.||||||+|++... + .+. |..++.. ..+.+
T Consensus 100 -~~~----~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~------------------~---~~~-Ll~~le~--~~~~~ 150 (373)
T 1jr3_A 100 -KVE----DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH------------------S---FNA-LLKTLEE--PPEHV 150 (373)
T ss_dssp -CSS----CHHHHHHHTTSCCSSSSSEEEEEECGGGSCHH------------------H---HHH-HHHHHHS--CCSSE
T ss_pred -CHH----HHHHHHHHHhhccccCCeEEEEEECcchhcHH------------------H---HHH-HHHHHhc--CCCce
Confidence 111 2455666655321 45789999999998543 1 222 4444422 14678
Q ss_pred EEEEecChHHHHHhhhcCccccccccceecccCCC
Q 003769 334 WIMGIASFQTYTRCKAGHPSLENMWKLHPFTIPVG 368 (796)
Q Consensus 334 ~~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp~~ 368 (796)
.+|++|+... ...+++.+|+ +.+.++.+
T Consensus 151 ~~Il~~~~~~-----~l~~~l~sr~--~~i~~~~l 178 (373)
T 1jr3_A 151 KFLLATTDPQ-----KLPVTILSRC--LQFHLKAL 178 (373)
T ss_dssp EEEEEESCGG-----GSCHHHHTTS--EEEECCCC
T ss_pred EEEEEeCChH-----hCcHHHHhhe--eEeeCCCC
Confidence 8888887432 2356677764 45555443
No 145
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.09 E-value=0.00013 Score=97.36 Aligned_cols=110 Identities=12% Similarity=0.224 Sum_probs=72.4
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHc---CCCCCceEEecCCCCccccccccccCCCCCCCCCCch-hhHHHHHHh---C
Q 003769 606 WLLFLGADDHNHGKEKIAREIAKVVF---GSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYI-ERLGLALNE---N 678 (796)
Q Consensus 606 ~~lf~Gp~g~~vGKt~lAk~LA~~~f---g~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~-~~L~eavr~---~ 678 (796)
-+|++||+| .|||.+.+.||+.+- |.. .....++-...++++. -|...-....+. |.|+.++|+ +
T Consensus 925 gvmlvGptg--sGKTt~~~~La~al~~l~~~~-~~~~~inpk~~t~~el-----~G~~d~~t~eW~DGils~~~R~~~~~ 996 (2695)
T 4akg_A 925 ALILVGKAG--CGKTATWKTVIDAMAIFDGHA-NVVYVIDTKVLTKESL-----YGSMLKATLEWRDGLFTSILRRVNDD 996 (2695)
T ss_dssp EEEEECSTT--SSHHHHHHHHHHHHHHHTCCE-EEEEEECTTTSCHHHH-----TTEECTTTCCEECCSHHHHHHHHHTC
T ss_pred eEEEECCCC--CCHHHHHHHHHHHHHHhcCCC-ceEEEeCCCCCCHHHh-----cceecCCCCeEecChHHHHHHHHHhc
Confidence 377999999 999999999998863 433 3344455332222221 111000111222 578888886 1
Q ss_pred ------C-CEEEEEcccccCCCChHHHHHHHHHHHHc-ceEecCCCceecCCcEEEEe
Q 003769 679 ------P-HRVFFMEDLDDHKVDSCYCQKGLKQAIEN-GCIALADGEIVPLKDSIIIF 728 (796)
Q Consensus 679 ------P-~~Vvl~deieka~~~~~~v~~~l~q~~d~-G~l~d~~G~~v~~~n~Iiil 728 (796)
. +.-|+||+ ++|+ .+..-|=-++|+ ..|+-.+|+.|.+.+..-+|
T Consensus 997 ~~~~~~~~~~WivfDG----~vD~-~WIE~LNsVLDDNk~L~L~ngErI~l~~~~~ll 1049 (2695)
T 4akg_A 997 ITGTFKNSRIWVVFDS----DLDP-EYVEAMNSVLDDNKILTLPNGERLPIPPNFRIL 1049 (2695)
T ss_dssp CCSSCSSEEEEEEECS----CCCH-HHHHTTHHHHSTTCEEECSSSCEEECCSSCEEE
T ss_pred cccccCCCCeEEEECC----CCCH-HHHHHHHHHhcCCCccccCCCCEEecCCCcEEE
Confidence 1 56799993 5588 888888888877 56899999999988766554
No 146
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.06 E-value=3.1e-06 Score=97.23 Aligned_cols=120 Identities=15% Similarity=0.140 Sum_probs=74.9
Q ss_pred CCCcchHHHHHHHHHHHhhcc-------------CCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCc
Q 003769 581 VPWQKEIMPEIARTILECRSK-------------KEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSR 647 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~-------------~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~ 647 (796)
++||++++..+...+...+.. .+...+||.||+| +|||.+|++||+.+ | -.++.++.++..
T Consensus 41 liG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppG--tGKTtla~~la~~l-~---~~~i~in~s~~~ 114 (516)
T 1sxj_A 41 VCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPG--IGKTTAAHLVAQEL-G---YDILEQNASDVR 114 (516)
T ss_dssp CCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTT--SSHHHHHHHHHHHT-T---CEEEEECTTSCC
T ss_pred hcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCC--CCHHHHHHHHHHHc-C---CCEEEEeCCCcc
Confidence 799999999998888765431 1346899999999 99999999999998 4 458999988652
Q ss_pred cccccccccCCC-CCC-CCCCchhhHHHH-HHhCCCEEEEEcccccCCCCh--HHHHHHHHHHHHcc
Q 003769 648 QDDCRTKKRSRD-VEL-GCCSYIERLGLA-LNENPHRVFFMEDLDDHKVDS--CYCQKGLKQAIENG 709 (796)
Q Consensus 648 ~~~~~~~k~~~~-~~~-~~~~~~~~L~ea-vr~~P~~Vvl~deieka~~~~--~~v~~~l~q~~d~G 709 (796)
.... ....... ... .-.++.....+. .......||+||||+.. .. ....+.|++.++++
T Consensus 115 ~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l--~~~~~~~l~~L~~~l~~~ 178 (516)
T 1sxj_A 115 SKTL-LNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGM--SGGDRGGVGQLAQFCRKT 178 (516)
T ss_dssp CHHH-HHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGC--CTTSTTHHHHHHHHHHHC
T ss_pred hHHH-HHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCcc--chhhHHHHHHHHHHHHhc
Confidence 2111 0000000 000 000111111111 13466789999999987 44 03457888888763
No 147
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.06 E-value=2.7e-06 Score=92.04 Aligned_cols=142 Identities=13% Similarity=0.043 Sum_probs=88.5
Q ss_pred cCCCCCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCC------CCCceEEecCCCCcccc
Q 003769 577 RKAVVPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGS------HSNNFTNLSSSQSRQDD 650 (796)
Q Consensus 577 ~~~~v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~------~~~~~i~~dms~~~~~~ 650 (796)
.. ++|+++.+..+...+..+........++|.||+| +|||.+|+++++.+... . -.++.+++.......
T Consensus 19 ~~--~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G--~GKT~l~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~ 93 (387)
T 2v1u_A 19 DV--LPHREAELRRLAEVLAPALRGEKPSNALLYGLTG--TGKTAVARLVLRRLEARASSLGVL-VKPIYVNARHRETPY 93 (387)
T ss_dssp SC--CTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTT--SSHHHHHHHHHHHHHHHHHHHTCC-EEEEEEETTTSCSHH
T ss_pred CC--CCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCC--CCHHHHHHHHHHHHHHHHhccCCC-eEEEEEECCcCCCHH
Confidence 56 8999999999998887654444556889999999 99999999999988432 3 568889876542111
Q ss_pred cc---ccccCCC-CCCCCCCc---hhhHHHHHHhCC-CEEEEEcccccCCCChHH--HHHHHHHHHHcceEecCCCceec
Q 003769 651 CR---TKKRSRD-VELGCCSY---IERLGLALNENP-HRVFFMEDLDDHKVDSCY--CQKGLKQAIENGCIALADGEIVP 720 (796)
Q Consensus 651 ~~---~~k~~~~-~~~~~~~~---~~~L~eavr~~P-~~Vvl~deieka~~~~~~--v~~~l~q~~d~G~l~d~~G~~v~ 720 (796)
.- .....+. ....|... ...+.+++.... ..||+||||+.. .. . .++.|.+.++.-.-. . +
T Consensus 94 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l--~~-~~~~~~~l~~l~~~~~~~--~---~- 164 (387)
T 2v1u_A 94 RVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFL--PK-RPGGQDLLYRITRINQEL--G---D- 164 (387)
T ss_dssp HHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHH--HH-STTHHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhh--cc-cCCCChHHHhHhhchhhc--C---C-
Confidence 00 0000011 11222211 245666665543 668999999998 55 4 677777776532110 0 0
Q ss_pred CCcEEEEeeCCC
Q 003769 721 LKDSIIIFSCDS 732 (796)
Q Consensus 721 ~~n~IiilTsn~ 732 (796)
-.+.+||+|+|.
T Consensus 165 ~~~~~~I~~t~~ 176 (387)
T 2v1u_A 165 RVWVSLVGITNS 176 (387)
T ss_dssp ---CEEEEECSC
T ss_pred CceEEEEEEECC
Confidence 135678888874
No 148
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.05 E-value=9.1e-05 Score=78.93 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=33.7
Q ss_pred ChHHHHHHHHHHhhccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 192 DSDDVMSVLNALINKKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 192 r~~ei~~vi~~L~r~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
|++|+.++.+ |.+ +.++|+|++|+|||++++.++.++
T Consensus 18 R~~el~~L~~-l~~--~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 18 REKEIEKLKG-LRA--PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp CHHHHHHHHH-TCS--SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHH-hcC--CcEEEECCCCCCHHHHHHHHHHhc
Confidence 9999999999 774 688899999999999999999875
No 149
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.05 E-value=7e-06 Score=92.82 Aligned_cols=95 Identities=17% Similarity=0.121 Sum_probs=69.9
Q ss_pred cCCCCCCcchHHHHHHHHHHHhhc-cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccc
Q 003769 577 RKAVVPWQKEIMPEIARTILECRS-KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKK 655 (796)
Q Consensus 577 ~~~~v~gQ~~av~~ia~~i~~~rs-~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k 655 (796)
+. |+||++++..+...+...+. ..|..-+||.||+| +|||.+|++||+.+ |.. -.|+.+++++.. ++
T Consensus 37 ~~--iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppG--tGKT~la~ala~~l-~~~-~~~~~~~~~~~~------~~ 104 (456)
T 2c9o_A 37 SG--LVGQENAREACGVIVELIKSKKMAGRAVLLAGPPG--TGKTALALAIAQEL-GSK-VPFCPMVGSEVY------ST 104 (456)
T ss_dssp TT--EESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTT--SSHHHHHHHHHHHH-CTT-SCEEEEEGGGGC------CS
T ss_pred hh--ccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCc--CCHHHHHHHHHHHh-CCC-ceEEEEeHHHHH------HH
Confidence 56 89999999988888776666 34556689999999 99999999999997 544 579999887541 01
Q ss_pred cCCCCCCCCCCchhhHHHHHH------hCCCEEEEEcccccC
Q 003769 656 RSRDVELGCCSYIERLGLALN------ENPHRVFFMEDLDDH 691 (796)
Q Consensus 656 ~~~~~~~~~~~~~~~L~eavr------~~P~~Vvl~deieka 691 (796)
+.| ..+.+.+.++ .+..+||||||||..
T Consensus 105 ------~~~--~~~~~~~~f~~a~~~~~~~~~il~iDEid~l 138 (456)
T 2c9o_A 105 ------EIK--KTEVLMENFRRAIGLRIKETKEVYEGEVTEL 138 (456)
T ss_dssp ------SSC--HHHHHHHHHHHTEEEEEEEEEEEEEEEEEEE
T ss_pred ------hhh--hhHHHHHHHHHHHhhhhcCCcEEEEechhhc
Confidence 222 2234555543 346689999999976
No 150
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.96 E-value=0.0001 Score=78.48 Aligned_cols=39 Identities=13% Similarity=0.218 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHHhhccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 192 DSDDVMSVLNALINKKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 192 r~~ei~~vi~~L~r~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
|++|+.++.+.+.. .+.++|+|++|+|||++++.++.+.
T Consensus 17 R~~el~~L~~~l~~-~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 17 REEESRKLEESLEN-YPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp CHHHHHHHHHHHHH-CSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHhc-CCeEEEECCCcCCHHHHHHHHHHHc
Confidence 99999999888764 4788899999999999999998763
No 151
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=97.92 E-value=1.8e-05 Score=74.93 Aligned_cols=60 Identities=13% Similarity=0.084 Sum_probs=54.8
Q ss_pred hccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHhhcCCCChhhHHHHHHHH
Q 003769 11 ALTVEAASIVKQAVNLAKRRGHAQVTPLHVATAMLACPTGLLRRACTHHSHSHHPLQWKALELCF 75 (796)
Q Consensus 11 rfT~~A~~vL~~A~~~Ar~~gh~~VtpeHLLlaLL~~~~g~l~~iL~~~~gi~~~~d~~aL~~~l 75 (796)
.||+.+.++|..|..+|+.+|+.+|+++|||+||+.++++.+.++|.. +|+ +. +.++..+
T Consensus 79 ~~s~~~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~~~~~~iL~~-~gi-~~---~~l~~~i 138 (143)
T 1k6k_A 79 QPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRK-HEV-SR---LDVVNFI 138 (143)
T ss_dssp EECHHHHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHHHHH-TTC-CH---HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcCcHHHHHHHH-cCC-CH---HHHHHHH
Confidence 699999999999999999999999999999999999888888999999 999 76 6776544
No 152
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.91 E-value=4.7e-06 Score=89.95 Aligned_cols=138 Identities=12% Similarity=0.112 Sum_probs=87.5
Q ss_pred cCCCCCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCC---CCCceEEecCCCCccccc--
Q 003769 577 RKAVVPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGS---HSNNFTNLSSSQSRQDDC-- 651 (796)
Q Consensus 577 ~~~~v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~---~~~~~i~~dms~~~~~~~-- 651 (796)
.. ++|+++.+..+.+.+..+....+...+++.||.| +|||.+|+++++.+... . ..++.+++........
T Consensus 20 ~~--~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G--~GKTtl~~~l~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 20 DE--LPHREDQIRKIASILAPLYREEKPNNIFIYGLTG--TGKTAVVKFVLSKLHKKFLGK-FKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp SC--CTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTT--SSHHHHHHHHHHHHHHHTCSS-CEEEEEEHHHHCSHHHHH
T ss_pred CC--CCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCC--CCHHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCHHHHH
Confidence 56 8899999888888877654445556888999999 99999999999988532 3 4578888653211000
Q ss_pred -cccccCCC-CCCCCCCc---hhhHHHHHHhCC-CEEEEEcccccCCCC----hHHHHHHHHHHHHcceEecCCCceecC
Q 003769 652 -RTKKRSRD-VELGCCSY---IERLGLALNENP-HRVFFMEDLDDHKVD----SCYCQKGLKQAIENGCIALADGEIVPL 721 (796)
Q Consensus 652 -~~~k~~~~-~~~~~~~~---~~~L~eavr~~P-~~Vvl~deieka~~~----~~~v~~~l~q~~d~G~l~d~~G~~v~~ 721 (796)
......+. .+..|... ...+.+.+.... ..||+|||++.. . . +++..|++.++.. . -
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l--~~~~~~-~~l~~l~~~~~~~-----~-----~ 161 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAF--VKKYND-DILYKLSRINSEV-----N-----K 161 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHH--HHSSCS-THHHHHHHHHHSC-----C-----C
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhh--hccCcC-HHHHHHhhchhhc-----C-----C
Confidence 01111111 11112211 245666666654 679999999986 3 5 6777777777654 1 1
Q ss_pred CcEEEEeeCCC
Q 003769 722 KDSIIIFSCDS 732 (796)
Q Consensus 722 ~n~IiilTsn~ 732 (796)
.+.+||+|++.
T Consensus 162 ~~~~~I~~~~~ 172 (386)
T 2qby_A 162 SKISFIGITND 172 (386)
T ss_dssp --EEEEEEESC
T ss_pred CeEEEEEEECC
Confidence 35677887763
No 153
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.89 E-value=1.7e-05 Score=96.60 Aligned_cols=60 Identities=25% Similarity=0.328 Sum_probs=54.7
Q ss_pred cccHHHHHHHHHHHHHHHhccchhhhhhhcccccccccCHHHHHHHHhcCC--hHHHHHHHcCCChHHHHHHHHh
Q 003769 102 SLSNALVAAFKRAQAHQRRGSIENQQQQQQQPVLALKIEVEQLVISILDDP--SVSRVMREAGFSSSQVKIKVEE 174 (796)
Q Consensus 102 ~~S~~l~~aL~~A~~~a~~~~lg~~~~~~~~~~l~~kI~~eHLLLALL~d~--~~a~vL~~~Gis~~~l~~~v~~ 174 (796)
.||+.++++|..|+..|++ +||+| |+++|||+|||+++ .+..+|+.+|++.+.++..+..
T Consensus 5 ~~t~~a~~al~~A~~~A~~--~~h~~-----------i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~ 66 (854)
T 1qvr_A 5 RWTQAAREALAQAQVLAQR--MKHQA-----------IDLPHLWAVLLKDERSLAWRLLEKAGADPKALKELQER 66 (854)
T ss_dssp CSCHHHHHHHHHHHHHHHH--TTCSE-----------ECHHHHHHHHCCSSSSHHHHHHHTTSSCHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHHHH--cCCCC-----------ccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 5999999999999999998 89998 99999999999864 4689999999999999988773
No 154
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.88 E-value=8.3e-06 Score=93.46 Aligned_cols=39 Identities=18% Similarity=0.133 Sum_probs=31.9
Q ss_pred ChHHHHHHHHHHhhccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 192 DSDDVMSVLNALINKKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 192 r~~ei~~vi~~L~r~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
+++.++.++..+. .+.+++|+||||||||++++.|+..+
T Consensus 27 q~~~i~~l~~al~-~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 27 RSHAIRLCLLAAL-SGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp CHHHHHHHHHHHH-HTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred HHHHHHHHHHHHh-cCCeeEeecCchHHHHHHHHHHHHHH
Confidence 5666666665555 57799999999999999999999866
No 155
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=97.87 E-value=2.1e-05 Score=74.79 Aligned_cols=63 Identities=27% Similarity=0.386 Sum_probs=57.2
Q ss_pred cccHHHHHHHHHHHHHHHhccchhhhhhhcccccccccCHHHHHHHHhcCC--hHHHHHHHcCCChHHHHHHHHhhcc
Q 003769 102 SLSNALVAAFKRAQAHQRRGSIENQQQQQQQPVLALKIEVEQLVISILDDP--SVSRVMREAGFSSSQVKIKVEENVP 177 (796)
Q Consensus 102 ~~S~~l~~aL~~A~~~a~~~~lg~~~~~~~~~~l~~kI~~eHLLLALL~d~--~~a~vL~~~Gis~~~l~~~v~~~v~ 177 (796)
.||+.++++|..|...|++ +||+| |+++|||+||++++ .+.++|+++|++.+.++..+.+.+.
T Consensus 5 ~~t~~~~~~l~~A~~~A~~--~~~~~-----------i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l~ 69 (148)
T 1khy_A 5 RLTNKFQLALADAQSLALG--HDNQF-----------IEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALN 69 (148)
T ss_dssp CBCHHHHHHHHHHHHHHHH--TTCSS-----------BCHHHHHHHHHTCTTCSHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHH--cCCCc-----------cCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6999999999999999998 88988 99999999999864 5799999999999999999886553
No 156
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.84 E-value=2.2e-05 Score=89.88 Aligned_cols=124 Identities=14% Similarity=0.145 Sum_probs=76.8
Q ss_pred CCCcchHHHHHHHHHHHhhc---------cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccc
Q 003769 581 VPWQKEIMPEIARTILECRS---------KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDC 651 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs---------~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~ 651 (796)
|+||++++..+-..+...+. .-|.+ +||.||+| +|||.||++||..+ + ..++.++.+++. +.
T Consensus 33 v~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~G-vLL~GppG--tGKTtLaraIa~~~-~---~~~i~i~g~~~~-~~- 103 (499)
T 2dhr_A 33 VAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPG--VGKTHLARAVAGEA-R---VPFITASGSDFV-EM- 103 (499)
T ss_dssp SCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSE-EEEECSSS--SSHHHHHHHHHHHT-T---CCEEEEEGGGGT-SS-
T ss_pred cCCcHHHHHHHHHHHHHhhchhhhhhccCCCCce-EEEECCCC--CCHHHHHHHHHHHh-C---CCEEEEehhHHH-Hh-
Confidence 78888888888777665433 22445 88999999 99999999999987 3 458898876541 11
Q ss_pred cccccCCCCCCCCCC--chhhHHHHHHhCCCEEEEEcccccCCC---------Ch--HHHHHHHHHHHHcceEecCCCce
Q 003769 652 RTKKRSRDVELGCCS--YIERLGLALNENPHRVFFMEDLDDHKV---------DS--CYCQKGLKQAIENGCIALADGEI 718 (796)
Q Consensus 652 ~~~k~~~~~~~~~~~--~~~~L~eavr~~P~~Vvl~deieka~~---------~~--~~v~~~l~q~~d~G~l~d~~G~~ 718 (796)
+.|.+ .+..+.+..+.+..+|++||||+.... +. ...++-|+..++.|.-
T Consensus 104 ----------~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~------- 166 (499)
T 2dhr_A 104 ----------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK------- 166 (499)
T ss_dssp ----------CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS-------
T ss_pred ----------hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc-------
Confidence 11111 111222222334458999999985411 11 0244556666654421
Q ss_pred ecCCcEEEEeeCCC
Q 003769 719 VPLKDSIIIFSCDS 732 (796)
Q Consensus 719 v~~~n~IiilTsn~ 732 (796)
=+..|+|.++|.
T Consensus 167 --~~~viviAatn~ 178 (499)
T 2dhr_A 167 --DTAIVVMAATNR 178 (499)
T ss_dssp --SCCCEEEECCSC
T ss_pred --CccEEEEEecCC
Confidence 145778888774
No 157
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.80 E-value=1.4e-05 Score=79.47 Aligned_cols=102 Identities=12% Similarity=0.120 Sum_probs=58.8
Q ss_pred eEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCEEEE
Q 003769 605 TWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHRVFF 684 (796)
Q Consensus 605 ~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vvl 684 (796)
..++|.||+| +|||.+|++|+..+.... ..++.+++++. ..... . . +.... ...+.+.+.+. .||+
T Consensus 55 ~~~~l~G~~G--tGKT~la~~i~~~~~~~~-~~~~~~~~~~~-~~~~~--~---~--~~~~~-~~~~~~~~~~~--~~li 120 (202)
T 2w58_A 55 KGLYLHGSFG--VGKTYLLAAIANELAKRN-VSSLIVYVPEL-FRELK--H---S--LQDQT-MNEKLDYIKKV--PVLM 120 (202)
T ss_dssp CEEEEECSTT--SSHHHHHHHHHHHHHTTT-CCEEEEEHHHH-HHHHH--H---C-----CC-CHHHHHHHHHS--SEEE
T ss_pred CeEEEECCCC--CCHHHHHHHHHHHHHHcC-CeEEEEEhHHH-HHHHH--H---H--hccch-HHHHHHHhcCC--CEEE
Confidence 5788999999 999999999999997655 56766766533 11110 0 0 11111 23445555544 4999
Q ss_pred EcccccCCCChHHHHH-HHHHHHHcceEecCCCceecCCcEEEEeeCC
Q 003769 685 MEDLDDHKVDSCYCQK-GLKQAIENGCIALADGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 685 ~deieka~~~~~~v~~-~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn 731 (796)
||||+....++ ..+. +|.++++... . .+..+|+|||
T Consensus 121 lDei~~~~~~~-~~~~~ll~~~l~~~~-~---------~~~~~i~tsn 157 (202)
T 2w58_A 121 LDDLGAEAMSS-WVRDDVFGPILQYRM-F---------ENLPTFFTSN 157 (202)
T ss_dssp EEEECCC---C-CGGGTTHHHHHHHHH-H---------TTCCEEEEES
T ss_pred EcCCCCCcCCH-HHHHHHHHHHHHHHH-h---------CCCCEEEEcC
Confidence 99995531144 3344 3334554321 1 1225788887
No 158
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.80 E-value=5e-06 Score=81.28 Aligned_cols=74 Identities=12% Similarity=0.004 Sum_probs=45.9
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHH-HHHHHHHHHhccCCCEEEEE
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQK-LVELSCHVKSYMGRGIVLYL 284 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~r-l~~l~~~v~~~~~~~~ILfI 284 (796)
.+.+++|+||||+|||++++.++..+... +|..++.++...+...++..+... ..++++.+. .+-+|+|
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~llil 106 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEK------KGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVL----NSPVLVL 106 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHH------SCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHHH----TCSEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHH------cCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHhc----CCCEEEE
Confidence 45788999999999999999999988511 133455555544443222222111 113334443 3579999
Q ss_pred cchhh
Q 003769 285 GDLKW 289 (796)
Q Consensus 285 DElh~ 289 (796)
||++.
T Consensus 107 DE~~~ 111 (180)
T 3ec2_A 107 DDLGS 111 (180)
T ss_dssp ETCSS
T ss_pred eCCCC
Confidence 99974
No 159
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.79 E-value=9e-05 Score=80.01 Aligned_cols=130 Identities=10% Similarity=0.036 Sum_probs=75.1
Q ss_pred HHHHHHHHHhh-ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHH
Q 003769 195 DVMSVLNALIN-KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVK 273 (796)
Q Consensus 195 ei~~vi~~L~r-~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~ 273 (796)
-+..+-..+.. +-.+.+|+||||+|||++++.++..+.... ....++.++.+.... ..+ +++++..+.
T Consensus 33 ~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~-----~~~~~~~~~~~~~~~--~~~----ir~~i~~~~ 101 (340)
T 1sxj_C 33 VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN-----YSNMVLELNASDDRG--IDV----VRNQIKDFA 101 (340)
T ss_dssp HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS-----HHHHEEEECTTSCCS--HHH----HHTHHHHHH
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC-----ccceEEEEcCccccc--HHH----HHHHHHHHH
Confidence 33333333433 445688999999999999999999875321 123567777544211 222 333333333
Q ss_pred hc----cCCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcEEEEEecChHHHHHhhh
Q 003769 274 SY----MGRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERVWIMGIASFQTYTRCKA 349 (796)
Q Consensus 274 ~~----~~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l~~IGatT~~ey~k~~~ 349 (796)
+. .++.-|++|||+|.+... +.+. |..++... .+...+|.+|+.. ..
T Consensus 102 ~~~~~~~~~~~viiiDe~~~l~~~---------------------~~~~-L~~~le~~--~~~~~~il~~n~~-----~~ 152 (340)
T 1sxj_C 102 STRQIFSKGFKLIILDEADAMTNA---------------------AQNA-LRRVIERY--TKNTRFCVLANYA-----HK 152 (340)
T ss_dssp HBCCSSSCSCEEEEETTGGGSCHH---------------------HHHH-HHHHHHHT--TTTEEEEEEESCG-----GG
T ss_pred hhcccCCCCceEEEEeCCCCCCHH---------------------HHHH-HHHHHhcC--CCCeEEEEEecCc-----cc
Confidence 21 024689999999988543 1222 44454321 4556777777643 14
Q ss_pred cCccccccccceecccC
Q 003769 350 GHPSLENMWKLHPFTIP 366 (796)
Q Consensus 350 ~dpaLerrf~lq~V~vp 366 (796)
..|++.+|+ +.+..+
T Consensus 153 i~~~i~sR~--~~~~~~ 167 (340)
T 1sxj_C 153 LTPALLSQC--TRFRFQ 167 (340)
T ss_dssp SCHHHHTTS--EEEECC
T ss_pred cchhHHhhc--eeEecc
Confidence 567888875 344443
No 160
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.79 E-value=1.6e-05 Score=89.65 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=55.4
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc-cchHH-HHHHHHHHHHHHHhccCCCEEEEE
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN-QSKGE-VEQKLVELSCHVKSYMGRGIVLYL 284 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a-~~rge-~E~rl~~l~~~v~~~~~~~~ILfI 284 (796)
+.|++|+||||||||++++.||..+ +..++.++.+.+.. .|.|+ .+..++++++.... ++++
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l----------~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~------~~~~ 113 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLA----------NAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMK------LVRQ 113 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHH------HHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHc----------CCCceeecchhhcccceeeccHHHHHHHHHHHHHh------cchh
Confidence 5799999999999999999999875 46799999888877 68884 89999999988765 2468
Q ss_pred cchhhhhh
Q 003769 285 GDLKWVAE 292 (796)
Q Consensus 285 DElh~l~~ 292 (796)
||+..+.+
T Consensus 114 De~d~~~~ 121 (444)
T 1g41_A 114 QEIAKNRA 121 (444)
T ss_dssp HHHHSCC-
T ss_pred hhhhhhhc
Confidence 88766544
No 161
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.75 E-value=2e-05 Score=78.29 Aligned_cols=72 Identities=15% Similarity=0.100 Sum_probs=47.1
Q ss_pred CceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHH-HHHHHHHHHHHHhccCCCEEEEEcc
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEV-EQKLVELSCHVKSYMGRGIVLYLGD 286 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~-E~rl~~l~~~v~~~~~~~~ILfIDE 286 (796)
++++|+||||+|||++++.++..+... +..++.++...+.......+ ...+.++++.+.. ..+|||||
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~lilDe 123 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR-------NVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK----VPVLMLDD 123 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT-------TCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH----SSEEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC----CCEEEEcC
Confidence 789999999999999999999988643 45676676655433111111 0112334455554 24999999
Q ss_pred hhhh
Q 003769 287 LKWV 290 (796)
Q Consensus 287 lh~l 290 (796)
++..
T Consensus 124 i~~~ 127 (202)
T 2w58_A 124 LGAE 127 (202)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 9654
No 162
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.73 E-value=0.00024 Score=76.84 Aligned_cols=143 Identities=10% Similarity=0.068 Sum_probs=82.6
Q ss_pred ChHHHHHHHHHHhh-ccCc-eEEEcCCcccHHHHHHHHHHHHHcCCCCCC--------------CCCceEEEeecccccc
Q 003769 192 DSDDVMSVLNALIN-KKRN-TVIVGGNLAAIEGVIRGIIDQFERGQVPGD--------------LRYAQFISLPLFSFRN 255 (796)
Q Consensus 192 r~~ei~~vi~~L~r-~k~n-~vLvGepGvGKTaiv~~la~ri~~~~vp~~--------------L~~~~v~~l~~~~l~a 255 (796)
.++.+..+...+.+ +..+ .+|+||||+|||++++.+|+.+........ .....++.++...- .
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~ 85 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-K 85 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-C
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-C
Confidence 45566666777766 4444 778899999999999999998864321100 00123555553210 0
Q ss_pred cchHHHHHHHHHHHHHHHhcc--CCCEEEEEcchhhhhhhhcccCCCCccccCCCcchhHHHHHHHHHHHhhhcCCCCcE
Q 003769 256 QSKGEVEQKLVELSCHVKSYM--GRGIVLYLGDLKWVAEFWANYYGGDEQKRNNNNYCVEEYVVMEIKRLVFEIGESERV 333 (796)
Q Consensus 256 ~~rge~E~rl~~l~~~v~~~~--~~~~ILfIDElh~l~~~~~~~~G~~~g~~~~~~~~~~d~~~~eLk~L~~~~~~~G~l 333 (796)
...+ -+.++++++.+.... ++..|++|||+|.+... ++|. |...+.. .....
T Consensus 86 ~~~~--i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~---------------------a~na-LLk~lEe--p~~~~ 139 (334)
T 1a5t_A 86 NTLG--VDAVREVTEKLNEHARLGGAKVVWVTDAALLTDA---------------------AANA-LLKTLEE--PPAET 139 (334)
T ss_dssp SSBC--HHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHH---------------------HHHH-HHHHHTS--CCTTE
T ss_pred CCCC--HHHHHHHHHHHhhccccCCcEEEEECchhhcCHH---------------------HHHH-HHHHhcC--CCCCe
Confidence 0111 123556666665321 45689999999988643 3344 4334411 13457
Q ss_pred EEEEecChHHHHHhhhcCccccccccceecccCCC
Q 003769 334 WIMGIASFQTYTRCKAGHPSLENMWKLHPFTIPVG 368 (796)
Q Consensus 334 ~~IGatT~~ey~k~~~~dpaLerrf~lq~V~vp~~ 368 (796)
.+|.+|+.. -...|++-+|. +.+.++.+
T Consensus 140 ~~Il~t~~~-----~~l~~ti~SRc--~~~~~~~~ 167 (334)
T 1a5t_A 140 WFFLATREP-----ERLLATLRSRC--RLHYLAPP 167 (334)
T ss_dssp EEEEEESCG-----GGSCHHHHTTS--EEEECCCC
T ss_pred EEEEEeCCh-----HhCcHHHhhcc--eeeeCCCC
Confidence 777776642 13578888885 55666543
No 163
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=97.72 E-value=4.6e-05 Score=75.21 Aligned_cols=61 Identities=21% Similarity=0.330 Sum_probs=56.0
Q ss_pred cccHHHHHHHHHHHHHHHhccchhhhhhhcccccccccCHHHHHHHHhcC--ChHHHHHHHcCCChHHHHHHHHhhc
Q 003769 102 SLSNALVAAFKRAQAHQRRGSIENQQQQQQQPVLALKIEVEQLVISILDD--PSVSRVMREAGFSSSQVKIKVEENV 176 (796)
Q Consensus 102 ~~S~~l~~aL~~A~~~a~~~~lg~~~~~~~~~~l~~kI~~eHLLLALL~d--~~~a~vL~~~Gis~~~l~~~v~~~v 176 (796)
.||+.++++|+.|...|++ +|++| |++||||+|||++ +.+.++|+++|++.+.+++.+. .+
T Consensus 24 kfT~~a~~aL~~A~~~A~~--~~h~~-----------I~~EHLLlaLL~~~~~~a~~iL~~~gvd~~~l~~~l~-~l 86 (171)
T 3zri_A 24 KLNAQSKLALEQAASLCIE--RQHPE-----------VTLEHYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAIA-ST 86 (171)
T ss_dssp HBCHHHHHHHHHHHHHHHH--HTCSE-----------ECHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH-HH
T ss_pred HcCHHHHHHHHHHHHHHHH--cCCCc-----------ccHHHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHH-HH
Confidence 5899999999999999998 88988 9999999999986 4579999999999999999887 65
No 164
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.69 E-value=1.8e-06 Score=101.00 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=21.2
Q ss_pred ceEEEcCCcccHHHHHHHHHHHH
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri 231 (796)
|++|+||||||||.+++.++...
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTC
T ss_pred ceEEECCCchHHHHHHHHHHHhC
Confidence 89999999999999999998754
No 165
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.65 E-value=0.00016 Score=76.17 Aligned_cols=103 Identities=14% Similarity=0.171 Sum_probs=66.6
Q ss_pred cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCC--CchhhHHHHHHhC
Q 003769 601 KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCC--SYIERLGLALNEN 678 (796)
Q Consensus 601 ~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~--~~~~~L~eavr~~ 678 (796)
.-|.| ++|.||.| +|||.|||+||..+ + ..++.++.++.. . + +.|. ..+..+.+..+..
T Consensus 42 ~~~~G-vlL~Gp~G--tGKTtLakala~~~-~---~~~i~i~g~~l~-~-----~------~~~~~~~~i~~vf~~a~~~ 102 (274)
T 2x8a_A 42 VTPAG-VLLAGPPG--CGKTLLAKAVANES-G---LNFISVKGPELL-N-----M------YVGESERAVRQVFQRAKNS 102 (274)
T ss_dssp CCCSE-EEEESSTT--SCHHHHHHHHHHHT-T---CEEEEEETTTTC-S-----S------TTHHHHHHHHHHHHHHHHT
T ss_pred CCCCe-EEEECCCC--CcHHHHHHHHHHHc-C---CCEEEEEcHHHH-h-----h------hhhHHHHHHHHHHHHHHhc
Confidence 34556 99999999 99999999999986 3 347888865431 0 0 1111 1234455555566
Q ss_pred CCEEEEEcccccCC---------CChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 679 PHRVFFMEDLDDHK---------VDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 679 P~~Vvl~deieka~---------~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
..+|+++|||+... ... .+.+-++.-|+.|.- -+..|++.++|-
T Consensus 103 ~p~i~~~Deid~~~~~r~~~~~~~~~-~~~~~~l~~Lsgg~~---------~~~~i~ia~tn~ 155 (274)
T 2x8a_A 103 APCVIFFDEVDALCPRRSDRETGASV-RVVNQLLTEMDGLEA---------RQQVFIMAATNR 155 (274)
T ss_dssp CSEEEEEETCTTTCC---------CT-THHHHHHHHHHTCCS---------TTCEEEEEEESC
T ss_pred CCCeEeeehhhhhhcccCCCcchHHH-HHHHHHHHhhhcccc---------cCCEEEEeecCC
Confidence 67899999999630 012 455667777776631 145788888874
No 166
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.63 E-value=5.6e-05 Score=73.77 Aligned_cols=103 Identities=12% Similarity=0.101 Sum_probs=63.4
Q ss_pred CeEEEEecCCCCCchHHHHHHHHHHHHc-CCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCEE
Q 003769 604 QTWLLFLGADDHNHGKEKIAREIAKVVF-GSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHRV 682 (796)
Q Consensus 604 ~~~~lf~Gp~g~~vGKt~lAk~LA~~~f-g~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~V 682 (796)
...++|.||+| +|||.||++++..+. ... ...+.+++.+. .+.... . +... ....+.+.+. ...|
T Consensus 38 g~~~~l~G~~G--~GKTtL~~~i~~~~~~~~g-~~~~~~~~~~~-~~~~~~-----~--~~~~-~~~~~~~~~~--~~~l 103 (180)
T 3ec2_A 38 GKGLTFVGSPG--VGKTHLAVATLKAIYEKKG-IRGYFFDTKDL-IFRLKH-----L--MDEG-KDTKFLKTVL--NSPV 103 (180)
T ss_dssp CCEEEECCSSS--SSHHHHHHHHHHHHHHHSC-CCCCEEEHHHH-HHHHHH-----H--HHHT-CCSHHHHHHH--TCSE
T ss_pred CCEEEEECCCC--CCHHHHHHHHHHHHHHHcC-CeEEEEEHHHH-HHHHHH-----H--hcCc-hHHHHHHHhc--CCCE
Confidence 45788999999 999999999999986 111 23455555432 111100 0 0000 0113444444 3469
Q ss_pred EEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCC
Q 003769 683 FFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 683 vl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn 731 (796)
++|||+...+.++ .....|.++++.-. . .+..+|+|||
T Consensus 104 lilDE~~~~~~~~-~~~~~l~~ll~~~~-~---------~~~~ii~tsn 141 (180)
T 3ec2_A 104 LVLDDLGSERLSD-WQRELISYIITYRY-N---------NLKSTIITTN 141 (180)
T ss_dssp EEEETCSSSCCCH-HHHHHHHHHHHHHH-H---------TTCEEEEECC
T ss_pred EEEeCCCCCcCCH-HHHHHHHHHHHHHH-H---------cCCCEEEEcC
Confidence 9999998655588 88888888886421 1 2355788888
No 167
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.62 E-value=0.00013 Score=78.49 Aligned_cols=41 Identities=5% Similarity=-0.027 Sum_probs=30.1
Q ss_pred ChHHHHHHHHHH-hh-ccCceEEEcCCcccHHHHHHHHHHHHH
Q 003769 192 DSDDVMSVLNAL-IN-KKRNTVIVGGNLAAIEGVIRGIIDQFE 232 (796)
Q Consensus 192 r~~ei~~vi~~L-~r-~k~n~vLvGepGvGKTaiv~~la~ri~ 232 (796)
.++.+..+...+ .. +..+.+|+||||+|||++++.++..+.
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 444455554545 33 445688999999999999999999764
No 168
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.62 E-value=5.2e-05 Score=81.14 Aligned_cols=90 Identities=8% Similarity=0.027 Sum_probs=58.5
Q ss_pred CCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCEE
Q 003769 603 EQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHRV 682 (796)
Q Consensus 603 ~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~V 682 (796)
....++|.||+| +|||.+|++++..+.... ..++.++++++. .... ... .....+.+.+..++ ..|
T Consensus 36 ~~~~lll~G~~G--tGKT~la~~i~~~~~~~~-~~~~~i~~~~~~-~~~~-----~~~---~~~~~~~~~~~~~~--~~v 101 (324)
T 1l8q_A 36 LYNPIFIYGSVG--TGKTHLLQAAGNEAKKRG-YRVIYSSADDFA-QAMV-----EHL---KKGTINEFRNMYKS--VDL 101 (324)
T ss_dssp SCSSEEEECSSS--SSHHHHHHHHHHHHHHTT-CCEEEEEHHHHH-HHHH-----HHH---HHTCHHHHHHHHHT--CSE
T ss_pred CCCeEEEECCCC--CcHHHHHHHHHHHHHHCC-CEEEEEEHHHHH-HHHH-----HHH---HcCcHHHHHHHhcC--CCE
Confidence 346789999999 999999999999987544 568888876431 1110 000 00112345555543 679
Q ss_pred EEEcccccCCCChHHHHHHHHHHHH
Q 003769 683 FFMEDLDDHKVDSCYCQKGLKQAIE 707 (796)
Q Consensus 683 vl~deieka~~~~~~v~~~l~q~~d 707 (796)
++||||+....++ ..+..|+..++
T Consensus 102 L~iDEi~~l~~~~-~~~~~l~~~l~ 125 (324)
T 1l8q_A 102 LLLDDVQFLSGKE-RTQIEFFHIFN 125 (324)
T ss_dssp EEEECGGGGTTCH-HHHHHHHHHHH
T ss_pred EEEcCcccccCCh-HHHHHHHHHHH
Confidence 9999999873344 55666666665
No 169
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.00023 Score=76.93 Aligned_cols=140 Identities=11% Similarity=0.064 Sum_probs=83.0
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCC------CCceEEecCCCCccccccc-
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSH------SNNFTNLSSSQSRQDDCRT- 653 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~------~~~~i~~dms~~~~~~~~~- 653 (796)
+++.++=+..|...|..+-...+...+++.||+| +|||.+++.+++.+.... .-.++.+++....+.....
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPG--TGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADD--STKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCS--HHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCC--CCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHH
Confidence 4556778889999998887666668889999999 999999999999995321 0146788865432211100
Q ss_pred ---cccCCCCCCCCCC--chhhHHHHH--HhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCCcEEE
Q 003769 654 ---KKRSRDVELGCCS--YIERLGLAL--NENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSII 726 (796)
Q Consensus 654 ---~k~~~~~~~~~~~--~~~~L~eav--r~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~Ii 726 (796)
.++.+.....+.. ....+.+.+ ..+...||+|||||.-. .. +++.-|++..+ .+-.+.+|
T Consensus 100 ~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~q-~~L~~l~~~~~-----------~~~s~~~v 166 (318)
T 3te6_A 100 KIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-SE-KILQYFEKWIS-----------SKNSKLSI 166 (318)
T ss_dssp HHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-CT-HHHHHHHHHHH-----------CSSCCEEE
T ss_pred HHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-cc-hHHHHHHhccc-----------ccCCcEEE
Confidence 0111111001111 112333333 34567899999999983 33 44433333321 12346788
Q ss_pred EeeCCCCCC
Q 003769 727 IFSCDSLDS 735 (796)
Q Consensus 727 ilTsn~~~~ 735 (796)
|+++|..+.
T Consensus 167 I~i~n~~d~ 175 (318)
T 3te6_A 167 ICVGGHNVT 175 (318)
T ss_dssp EEECCSSCC
T ss_pred EEEecCccc
Confidence 988886543
No 170
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.57 E-value=0.00012 Score=79.13 Aligned_cols=76 Identities=8% Similarity=0.079 Sum_probs=53.4
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLG 285 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfID 285 (796)
..+.++|+||||+|||+++..++.. .|. .+.++++.....+..+..+.++.+..+.+.+... + +||||
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~--~G~------~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~---~-LLVID 189 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA--LGG------KDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQH---R-VIVID 189 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH--HHT------TSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHC---S-EEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh--CCC------CEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhC---C-EEEEe
Confidence 5556688999999999999999986 221 1235666323333334467788888888888763 3 99999
Q ss_pred chhhhhhh
Q 003769 286 DLKWVAEF 293 (796)
Q Consensus 286 Elh~l~~~ 293 (796)
+++.+...
T Consensus 190 sI~aL~~~ 197 (331)
T 2vhj_A 190 SLKNVIGA 197 (331)
T ss_dssp CCTTTC--
T ss_pred cccccccc
Confidence 99998654
No 171
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.56 E-value=0.00041 Score=74.92 Aligned_cols=103 Identities=17% Similarity=0.196 Sum_probs=72.6
Q ss_pred CCCcchHHHHHHHHHHHhhc-cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCC
Q 003769 581 VPWQKEIMPEIARTILECRS-KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRD 659 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs-~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~ 659 (796)
++||+.++..+...|...+. .++...++|.||+| +|||.||+.||..+- .. +........
T Consensus 27 ~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G--~GKTTLa~~ia~~l~-~~---~~~~sg~~~------------- 87 (334)
T 1in4_A 27 FIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPG--LGKTTLAHIIASELQ-TN---IHVTSGPVL------------- 87 (334)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTT--SSHHHHHHHHHHHHT-CC---EEEEETTTC-------------
T ss_pred ccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCC--CcHHHHHHHHHHHhC-CC---EEEEechHh-------------
Confidence 58999999999988876644 44445689999999 999999999999983 22 222111100
Q ss_pred CCCCCCCchhhHHHHHHh-CCCEEEEEcccccCCCChHHHHHHHHHHHHcceE
Q 003769 660 VELGCCSYIERLGLALNE-NPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCI 711 (796)
Q Consensus 660 ~~~~~~~~~~~L~eavr~-~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l 711 (796)
.. .+.+...+.. .+..|+++||++.. .+ .+++.|+..++++.+
T Consensus 88 --~~----~~~l~~~~~~~~~~~v~~iDE~~~l--~~-~~~e~L~~~~~~~~~ 131 (334)
T 1in4_A 88 --VK----QGDMAAILTSLERGDVLFIDEIHRL--NK-AVEELLYSAIEDFQI 131 (334)
T ss_dssp --CS----HHHHHHHHHHCCTTCEEEEETGGGC--CH-HHHHHHHHHHHTSCC
T ss_pred --cC----HHHHHHHHHHccCCCEEEEcchhhc--CH-HHHHHHHHHHHhccc
Confidence 00 1123322222 46789999999999 88 999999999988754
No 172
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.55 E-value=0.0001 Score=75.88 Aligned_cols=105 Identities=14% Similarity=0.163 Sum_probs=62.1
Q ss_pred CCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCE
Q 003769 602 KEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHR 681 (796)
Q Consensus 602 ~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~ 681 (796)
-|.+ ++|.||+| +|||.||++||..+ + ..++.++.++.. ... .+. +...+..+.+..+....+
T Consensus 48 ~~~g-~ll~G~~G--~GKTtl~~~i~~~~-~---~~~i~~~~~~~~-~~~--------~~~-~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 48 IPKG-VLLVGPPG--VGKTHLARAVAGEA-R---VPFITASGSDFV-EMF--------VGV-GAARVRDLFETAKRHAPC 110 (254)
T ss_dssp CCSE-EEEECCTT--SSHHHHHHHHHHHT-T---CCEEEEEHHHHH-HSC--------TTH-HHHHHHHHHHHHTTSSSE
T ss_pred CCCe-EEEECCCC--CCHHHHHHHHHHHh-C---CCEEEeeHHHHH-HHH--------hhH-HHHHHHHHHHHHHhcCCe
Confidence 3456 88999999 99999999999987 3 347777764321 000 000 001123455555555668
Q ss_pred EEEEcccccCCC---------Ch--HHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 682 VFFMEDLDDHKV---------DS--CYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 682 Vvl~deieka~~---------~~--~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
++++|||+.... +. ....+-+++.++.|.- =+..|++.++|.
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~---------~~~~i~~a~t~~ 163 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK---------DTAIVVMAATNR 163 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT---------TCCEEEEEEESC
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC---------CCCEEEEEccCC
Confidence 999999974310 11 1344556666664421 134677777764
No 173
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.54 E-value=0.00021 Score=83.64 Aligned_cols=39 Identities=13% Similarity=0.279 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhccCceEEEcCCcccHHHHHHHHHHHHH
Q 003769 194 DDVMSVLNALINKKRNTVIVGGNLAAIEGVIRGIIDQFE 232 (796)
Q Consensus 194 ~ei~~vi~~L~r~k~n~vLvGepGvGKTaiv~~la~ri~ 232 (796)
+++.+.+........+++|+||||+|||++++.|+..+.
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 344444444444667999999999999999999998653
No 174
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.49 E-value=2.9e-05 Score=83.44 Aligned_cols=73 Identities=16% Similarity=0.108 Sum_probs=46.1
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHH-cCCCCCCCCCceEEEeecccccccchHHH-HHHHHHHHHHHHhccCCCEEEEE
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFE-RGQVPGDLRYAQFISLPLFSFRNQSKGEV-EQKLVELSCHVKSYMGRGIVLYL 284 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~-~~~vp~~L~~~~v~~l~~~~l~a~~rge~-E~rl~~l~~~v~~~~~~~~ILfI 284 (796)
.++++|+||||||||+++.+++..+. .. +..++.++...++...+..+ +..+.++++.+.. .-+|||
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~-------g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~----~~lLii 220 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKK-------GVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKN----VPVLIL 220 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHS-------CCCEEEEEHHHHHHHHHCCCC----CCTTHHHHT----SSEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhc-------CCcEEEEEHHHHHHHHHHHhccchHHHHHHHhcC----CCEEEE
Confidence 57899999999999999999999886 43 45676666555443111000 0112333444443 349999
Q ss_pred cchhhh
Q 003769 285 GDLKWV 290 (796)
Q Consensus 285 DElh~l 290 (796)
||++..
T Consensus 221 Ddig~~ 226 (308)
T 2qgz_A 221 DDIGAE 226 (308)
T ss_dssp ETCCC-
T ss_pred cCCCCC
Confidence 999654
No 175
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.49 E-value=0.00012 Score=76.66 Aligned_cols=71 Identities=20% Similarity=0.289 Sum_probs=46.3
Q ss_pred CCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCEE
Q 003769 603 EQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHRV 682 (796)
Q Consensus 603 ~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~V 682 (796)
|.+ ++|.||+| +|||.||++||..+- ..++.++.++.. ... .+. ....+..+.+..+....++
T Consensus 73 ~~g-vll~Gp~G--tGKTtl~~~i~~~~~----~~~i~~~~~~~~-~~~--------~~~-~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 73 PKG-VLLVGPPG--VGKTHLARAVAGEAR----VPFITASGSDFV-EMF--------VGV-GAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp CCE-EEEECCTT--SSHHHHHHHHHHHTT----CCEEEEEHHHHH-HST--------TTH-HHHHHHHHHHHHHTSCSEE
T ss_pred CCe-EEEECCCc--ChHHHHHHHHHHHcC----CCEEEecHHHHH-HHH--------hhH-HHHHHHHHHHHHHhcCCcE
Confidence 445 88999999 999999999999873 347887764321 000 000 0011234555555556689
Q ss_pred EEEccccc
Q 003769 683 FFMEDLDD 690 (796)
Q Consensus 683 vl~deiek 690 (796)
+++|||+.
T Consensus 136 ~~iDeid~ 143 (278)
T 1iy2_A 136 VFIDEIDA 143 (278)
T ss_dssp EEEETHHH
T ss_pred EehhhhHh
Confidence 99999974
No 176
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.48 E-value=0.00021 Score=80.49 Aligned_cols=113 Identities=11% Similarity=0.092 Sum_probs=64.4
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCC--CCCceEEecCCCCccccccccccCC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGS--HSNNFTNLSSSQSRQDDCRTKKRSR 658 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~--~~~~~i~~dms~~~~~~~~~~k~~~ 658 (796)
|+||.... +.+.....+........++|.||+| +|||.||+++|..+... . ..++.++++++ ..+.. .
T Consensus 108 v~g~~n~~-a~~~~~~~a~~~~~~~~lll~Gp~G--~GKTtLa~aia~~l~~~~~~-~~v~~v~~~~~-~~~~~-----~ 177 (440)
T 2z4s_A 108 VVGPGNSF-AYHAALEVAKHPGRYNPLFIYGGVG--LGKTHLLQSIGNYVVQNEPD-LRVMYITSEKF-LNDLV-----D 177 (440)
T ss_dssp CCCTTTHH-HHHHHHHHHHSTTSSCCEEEECSSS--SSHHHHHHHHHHHHHHHCCS-SCEEEEEHHHH-HHHHH-----H
T ss_pred CCCCchHH-HHHHHHHHHhCCCCCCeEEEECCCC--CCHHHHHHHHHHHHHHhCCC-CeEEEeeHHHH-HHHHH-----H
Confidence 55765543 2222222222222156899999999 99999999999988533 2 45777776533 11110 0
Q ss_pred CCCCCCCCchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHc
Q 003769 659 DVELGCCSYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIEN 708 (796)
Q Consensus 659 ~~~~~~~~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~ 708 (796)
.. .....+.+.+..+ ....|+|||||+...... ..++.|+..|+.
T Consensus 178 ~~---~~~~~~~~~~~~~-~~~~vL~IDEi~~l~~~~-~~q~~l~~~l~~ 222 (440)
T 2z4s_A 178 SM---KEGKLNEFREKYR-KKVDILLIDDVQFLIGKT-GVQTELFHTFNE 222 (440)
T ss_dssp HH---HTTCHHHHHHHHT-TTCSEEEEECGGGGSSCH-HHHHHHHHHHHH
T ss_pred HH---HcccHHHHHHHhc-CCCCEEEEeCcccccCCh-HHHHHHHHHHHH
Confidence 00 0011123333333 246799999999873233 567777777754
No 177
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.48 E-value=9.5e-05 Score=70.90 Aligned_cols=68 Identities=9% Similarity=-0.041 Sum_probs=49.5
Q ss_pred HHHHhh-ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCC
Q 003769 200 LNALIN-KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGR 278 (796)
Q Consensus 200 i~~L~r-~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~ 278 (796)
+..|.. ...+++|+||+|+|||++++.++..+.. .|.+++.++...+... ..+ ..
T Consensus 28 ~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~-------~g~~~~~~~~~~~~~~-------------~~~----~~ 83 (149)
T 2kjq_A 28 VYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQALE-------AGKNAAYIDAASMPLT-------------DAA----FE 83 (149)
T ss_dssp HHHCCCCCCSEEEEESSSTTTTCHHHHHHHHHHHT-------TTCCEEEEETTTSCCC-------------GGG----GG
T ss_pred HHHHHhcCCCEEEEECCCCCCHHHHHHHHHHHHHh-------cCCcEEEEcHHHhhHH-------------HHH----hC
Confidence 444544 6788999999999999999999998763 2566788887665543 011 23
Q ss_pred CEEEEEcchhhhh
Q 003769 279 GIVLYLGDLKWVA 291 (796)
Q Consensus 279 ~~ILfIDElh~l~ 291 (796)
+-||+|||++.+.
T Consensus 84 ~~lLilDE~~~~~ 96 (149)
T 2kjq_A 84 AEYLAVDQVEKLG 96 (149)
T ss_dssp CSEEEEESTTCCC
T ss_pred CCEEEEeCccccC
Confidence 5789999998654
No 178
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.46 E-value=0.00023 Score=71.35 Aligned_cols=82 Identities=7% Similarity=0.092 Sum_probs=55.8
Q ss_pred CCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCEE
Q 003769 603 EQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHRV 682 (796)
Q Consensus 603 ~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~V 682 (796)
+...++|.||+| +|||.+|+++|+.+.... ..++.+++++.. ... ......+ ....|
T Consensus 51 ~~~~~ll~G~~G--~GKT~la~~l~~~~~~~~-~~~~~~~~~~~~-~~~-------------~~~~~~~------~~~~v 107 (242)
T 3bos_A 51 GVQAIYLWGPVK--SGRTHLIHAACARANELE-RRSFYIPLGIHA-SIS-------------TALLEGL------EQFDL 107 (242)
T ss_dssp SCSEEEEECSTT--SSHHHHHHHHHHHHHHTT-CCEEEEEGGGGG-GSC-------------GGGGTTG------GGSSE
T ss_pred CCCeEEEECCCC--CCHHHHHHHHHHHHHHcC-CeEEEEEHHHHH-HHH-------------HHHHHhc------cCCCE
Confidence 456899999999 999999999999987655 567778776441 110 0001111 33579
Q ss_pred EEEcccccCCCChHHHHHHHHHHHHc
Q 003769 683 FFMEDLDDHKVDSCYCQKGLKQAIEN 708 (796)
Q Consensus 683 vl~deieka~~~~~~v~~~l~q~~d~ 708 (796)
|+|||++....+. ..++.|++.++.
T Consensus 108 liiDe~~~~~~~~-~~~~~l~~~l~~ 132 (242)
T 3bos_A 108 ICIDDVDAVAGHP-LWEEAIFDLYNR 132 (242)
T ss_dssp EEEETGGGGTTCH-HHHHHHHHHHHH
T ss_pred EEEeccccccCCH-HHHHHHHHHHHH
Confidence 9999999982222 337778877764
No 179
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.43 E-value=0.00019 Score=68.81 Aligned_cols=75 Identities=8% Similarity=0.104 Sum_probs=53.1
Q ss_pred CCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCEE
Q 003769 603 EQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHRV 682 (796)
Q Consensus 603 ~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~V 682 (796)
+..+++|.||+| +|||.|+++++..+..+. ...+.++..+.. .. ++..+ ..|
T Consensus 35 ~g~~~~l~G~~G--~GKTtL~~~i~~~~~~~g-~~~~~~~~~~~~-~~-----------------------~~~~~-~~l 86 (149)
T 2kjq_A 35 HGQFIYVWGEEG--AGKSHLLQAWVAQALEAG-KNAAYIDAASMP-LT-----------------------DAAFE-AEY 86 (149)
T ss_dssp CCSEEEEESSST--TTTCHHHHHHHHHHHTTT-CCEEEEETTTSC-CC-----------------------GGGGG-CSE
T ss_pred CCCEEEEECCCC--CCHHHHHHHHHHHHHhcC-CcEEEEcHHHhh-HH-----------------------HHHhC-CCE
Confidence 335788999999 999999999999886433 346666665431 00 11223 479
Q ss_pred EEEcccccCCCChHHHHHHHHHHHHc
Q 003769 683 FFMEDLDDHKVDSCYCQKGLKQAIEN 708 (796)
Q Consensus 683 vl~deieka~~~~~~v~~~l~q~~d~ 708 (796)
++|||+... ++ ..+..|++.++.
T Consensus 87 LilDE~~~~--~~-~~~~~l~~li~~ 109 (149)
T 2kjq_A 87 LAVDQVEKL--GN-EEQALLFSIFNR 109 (149)
T ss_dssp EEEESTTCC--CS-HHHHHHHHHHHH
T ss_pred EEEeCcccc--Ch-HHHHHHHHHHHH
Confidence 999999987 76 557777777763
No 180
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.31 E-value=0.0015 Score=70.05 Aligned_cols=79 Identities=10% Similarity=0.101 Sum_probs=49.8
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhcc--CCCEEEE
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYM--GRGIVLY 283 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~--~~~~ILf 283 (796)
+..+.+|+||||+|||++++.+|..... .+. ....++.++... ...+ -+.++++++.+.... ++.-|+|
T Consensus 17 ~~~~~Lf~Gp~G~GKtt~a~~la~~~~~--~~~--~~~d~~~l~~~~---~~~~--id~ir~li~~~~~~p~~~~~kvvi 87 (305)
T 2gno_A 17 EGISILINGEDLSYPREVSLELPEYVEK--FPP--KASDVLEIDPEG---ENIG--IDDIRTIKDFLNYSPELYTRKYVI 87 (305)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHHHHHT--SCC--CTTTEEEECCSS---SCBC--HHHHHHHHHHHTSCCSSSSSEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhCch--hhc--cCCCEEEEcCCc---CCCC--HHHHHHHHHHHhhccccCCceEEE
Confidence 4346778999999999999999985321 111 234566676432 0111 112566677665421 3457999
Q ss_pred Ecchhhhhhh
Q 003769 284 LGDLKWVAEF 293 (796)
Q Consensus 284 IDElh~l~~~ 293 (796)
|||+|.+...
T Consensus 88 Idead~lt~~ 97 (305)
T 2gno_A 88 VHDCERMTQQ 97 (305)
T ss_dssp ETTGGGBCHH
T ss_pred eccHHHhCHH
Confidence 9999998653
No 181
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.30 E-value=8.7e-05 Score=79.67 Aligned_cols=104 Identities=15% Similarity=0.159 Sum_probs=56.8
Q ss_pred CeEEEEecCCCCCchHHHHHHHHHHHHc-CCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCEE
Q 003769 604 QTWLLFLGADDHNHGKEKIAREIAKVVF-GSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHRV 682 (796)
Q Consensus 604 ~~~~lf~Gp~g~~vGKt~lAk~LA~~~f-g~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~V 682 (796)
...++|.||+| +|||.||++||..+. ... ..++.+.+++. ..+.. .. +.... ...+.+.+.+. .|
T Consensus 152 ~~~lll~G~~G--tGKT~La~aia~~~~~~~g-~~v~~~~~~~l-~~~l~-----~~--~~~~~-~~~~~~~~~~~--~l 217 (308)
T 2qgz_A 152 QKGLYLYGDMG--IGKSYLLAAMAHELSEKKG-VSTTLLHFPSF-AIDVK-----NA--ISNGS-VKEEIDAVKNV--PV 217 (308)
T ss_dssp CCEEEEECSTT--SSHHHHHHHHHHHHHHHSC-CCEEEEEHHHH-HHHHH-----CC--CC-----CCTTHHHHTS--SE
T ss_pred CceEEEECCCC--CCHHHHHHHHHHHHHHhcC-CcEEEEEHHHH-HHHHH-----HH--hccch-HHHHHHHhcCC--CE
Confidence 46899999999 999999999999887 443 45666665432 11111 00 00011 12334455543 49
Q ss_pred EEEcccccCCCChHHHHH-HHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 683 FFMEDLDDHKVDSCYCQK-GLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 683 vl~deieka~~~~~~v~~-~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
++||||.....++ ..+. +|.++++... . .+..+|+|||.
T Consensus 218 LiiDdig~~~~~~-~~~~~ll~~ll~~r~-~---------~~~~~IitSN~ 257 (308)
T 2qgz_A 218 LILDDIGAEQATS-WVRDEVLQVILQYRM-L---------EELPTFFTSNY 257 (308)
T ss_dssp EEEETCCC-------CTTTTHHHHHHHHH-H---------HTCCEEEEESS
T ss_pred EEEcCCCCCCCCH-HHHHHHHHHHHHHHH-H---------CCCcEEEECCC
Confidence 9999995431144 4343 3444554321 1 12248888983
No 182
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.28 E-value=0.00039 Score=75.11 Aligned_cols=65 Identities=11% Similarity=0.209 Sum_probs=41.9
Q ss_pred CceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHHHHHHHHHhccCCCEEEEEcch
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMGRGIVLYLGDL 287 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~~~~ILfIDEl 287 (796)
.+++|+||||+|||++++.+|..+. ..+...+...+.. -++ +..++.. . ..+.|+||||+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~----------~~~~~~sg~~~~~--~~~----l~~~~~~---~-~~~~v~~iDE~ 111 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ----------TNIHVTSGPVLVK--QGD----MAAILTS---L-ERGDVLFIDEI 111 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT----------CCEEEEETTTCCS--HHH----HHHHHHH---C-CTTCEEEEETG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC----------CCEEEEechHhcC--HHH----HHHHHHH---c-cCCCEEEEcch
Confidence 6789999999999999999999762 2333333222211 112 2222222 1 34579999999
Q ss_pred hhhhh
Q 003769 288 KWVAE 292 (796)
Q Consensus 288 h~l~~ 292 (796)
|.+..
T Consensus 112 ~~l~~ 116 (334)
T 1in4_A 112 HRLNK 116 (334)
T ss_dssp GGCCH
T ss_pred hhcCH
Confidence 98865
No 183
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.21 E-value=0.00059 Score=74.56 Aligned_cols=143 Identities=10% Similarity=0.026 Sum_probs=86.1
Q ss_pred cCCCCCCcchHHHHHHHHH-HHhhcc--CCCeEEEE--ecCCCCCchHHHHHHHHHHHHcCC------CCCceEEecCCC
Q 003769 577 RKAVVPWQKEIMPEIARTI-LECRSK--KEQTWLLF--LGADDHNHGKEKIAREIAKVVFGS------HSNNFTNLSSSQ 645 (796)
Q Consensus 577 ~~~~v~gQ~~av~~ia~~i-~~~rs~--~~~~~~lf--~Gp~g~~vGKt~lAk~LA~~~fg~------~~~~~i~~dms~ 645 (796)
.. ++|.++.+..+.+.+ ..+... .....+++ .||.| +|||.||+++++.+-.. . -.++.+++..
T Consensus 22 ~~--l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G--~GKT~L~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 96 (412)
T 1w5s_A 22 PE--LRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVG--IGKTTLAKFTVKRVSEAAAKEGLT-VKQAYVNAFN 96 (412)
T ss_dssp SS--CSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCS--SSHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGG
T ss_pred CC--CCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCC--CCHHHHHHHHHHHHHHHHhccCCc-eeEEEEECCC
Confidence 56 899999999999988 766554 44567788 99999 99999999999887431 2 3467777643
Q ss_pred Ccccccc---ccccCCC-CCCCCCCc---hhhHHHHHHh-CCCEEEEEcccccCCC----ChHHHHHHHHHHHHcceEec
Q 003769 646 SRQDDCR---TKKRSRD-VELGCCSY---IERLGLALNE-NPHRVFFMEDLDDHKV----DSCYCQKGLKQAIENGCIAL 713 (796)
Q Consensus 646 ~~~~~~~---~~k~~~~-~~~~~~~~---~~~L~eavr~-~P~~Vvl~deieka~~----~~~~v~~~l~q~~d~G~l~d 713 (796)
......- .....+. ....+... ...|.+.+.. +...||+|||++..+. +. +++..|++.+++....
T Consensus 97 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~-~~l~~l~~~~~~~~~~- 174 (412)
T 1w5s_A 97 APNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAA-EDLYTLLRVHEEIPSR- 174 (412)
T ss_dssp CCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCH-HHHHHHHTHHHHSCCT-
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcch-HHHHHHHHHHHhcccC-
Confidence 3111110 0000011 00111111 2355555553 4456899999998621 34 7777777777764210
Q ss_pred CCCceecCCcEEEEeeCC
Q 003769 714 ADGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 714 ~~G~~v~~~n~IiilTsn 731 (796)
| . -.+..||+|++
T Consensus 175 --~--~-~~~v~lI~~~~ 187 (412)
T 1w5s_A 175 --D--G-VNRIGFLLVAS 187 (412)
T ss_dssp --T--S-CCBEEEEEEEE
T ss_pred --C--C-CceEEEEEEec
Confidence 1 0 14566777765
No 184
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.05 E-value=0.0013 Score=72.33 Aligned_cols=52 Identities=21% Similarity=0.188 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeeccccc
Q 003769 195 DVMSVLNALINKKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFR 254 (796)
Q Consensus 195 ei~~vi~~L~r~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~ 254 (796)
++...+..++....++++.||+|+||+.+++.+...-.+. + .|+.+|.+++-
T Consensus 140 ~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~-------~-~fv~vnc~~~~ 191 (368)
T 3dzd_A 140 EIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRK-------G-AFVDLNCASIP 191 (368)
T ss_dssp HHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCC-------S-CEEEEESSSSC
T ss_pred HHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhcccc-------C-CcEEEEcccCC
Confidence 3444444444466778899999999999999887643211 2 39999988764
No 185
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.93 E-value=0.0011 Score=85.14 Aligned_cols=79 Identities=14% Similarity=-0.014 Sum_probs=56.0
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeeccccc------------ccchHH----HHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFR------------NQSKGE----VEQKLVELSC 270 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~------------a~~rge----~E~rl~~l~~ 270 (796)
.+-++|+||||||||.++.+++.+-... |-..+.++..-+. .++.++ -|+.|+.++.
T Consensus 1082 g~~~l~~G~~g~GKT~la~~~~~~~~~~-------g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~ 1154 (1706)
T 3cmw_A 1082 GRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDA 1154 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCChHHHHHHHHHHhhhc-------CCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHH
Confidence 3347788999999999999998754432 1223333332221 244556 7888888888
Q ss_pred HHHhccCCCEEEEEcchhhhhhhh
Q 003769 271 HVKSYMGRGIVLYLGDLKWVAEFW 294 (796)
Q Consensus 271 ~v~~~~~~~~ILfIDElh~l~~~~ 294 (796)
.+++ ..++++|+||+..|++.+
T Consensus 1155 ~ar~--~~~~~i~~d~~~al~~~~ 1176 (1706)
T 3cmw_A 1155 LARS--GAVDVIVVDSVAALTPKA 1176 (1706)
T ss_dssp HHHH--TCCSEEEESCGGGCCCHH
T ss_pred HHHh--cCCeEEEeCchHhcCccc
Confidence 8887 578999999999999874
No 186
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=96.89 E-value=0.00076 Score=76.35 Aligned_cols=140 Identities=14% Similarity=0.248 Sum_probs=88.3
Q ss_pred HHHHHHHHhhcCCCCCCcchHHHHHHHHHHHhhc-cCCCeEEEEecCCCCCchHHHHHHHH-HHHHcCCCCCceEEecCC
Q 003769 567 NLKVLSDALERKAVVPWQKEIMPEIARTILECRS-KKEQTWLLFLGADDHNHGKEKIAREI-AKVVFGSHSNNFTNLSSS 644 (796)
Q Consensus 567 ~L~~l~~~L~~~~~v~gQ~~av~~ia~~i~~~rs-~~~~~~~lf~Gp~g~~vGKt~lAk~L-A~~~fg~~~~~~i~~dms 644 (796)
.+..|.+.+.. |+||+++..+|.-++...-. .+...-+|+.|++| + ||.|||.+ ++.+ .. ..++.-.++
T Consensus 204 ~~~~l~~sIap---I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PG--t-KS~Lar~i~~~i~--pR-~~ft~g~~s 274 (506)
T 3f8t_A 204 PLTTFARAIAP---LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPV--V-CSEILHHVLDHLA--PR-GVYVDLRRT 274 (506)
T ss_dssp HHHHHHHHHCC---STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHH--H-HHHHHHHHHHHTC--SS-EEEEEGGGC
T ss_pred HHHHHHHHhcc---cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCC--h-HHHHHHHHHHHhC--CC-eEEecCCCC
Confidence 34455566654 89998876655544432110 23334799999999 9 99999999 7765 22 223433332
Q ss_pred CCccccccccccCCCCCCCCCCch---hhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecC
Q 003769 645 QSRQDDCRTKKRSRDVELGCCSYI---ERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPL 721 (796)
Q Consensus 645 ~~~~~~~~~~k~~~~~~~~~~~~~---~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~ 721 (796)
.. ...+.. ...+ .| +. |.|.-| -..|+|+|||.++ .+ .++..|+++|++|.++=. |.+.+
T Consensus 275 s~--~gLt~s--~r~~--tG--~~~~~G~l~LA----dgGvl~lDEIn~~--~~-~~qsaLlEaMEe~~VtI~-G~~lp- 337 (506)
T 3f8t_A 275 EL--TDLTAV--LKED--RG--WALRAGAAVLA----DGGILAVDHLEGA--PE-PHRWALMEAMDKGTVTVD-GIALN- 337 (506)
T ss_dssp CH--HHHSEE--EEES--SS--EEEEECHHHHT----TTSEEEEECCTTC--CH-HHHHHHHHHHHHSEEEET-TEEEE-
T ss_pred Cc--cCceEE--EEcC--CC--cccCCCeeEEc----CCCeeehHhhhhC--CH-HHHHHHHHHHhCCcEEEC-CEEcC-
Confidence 11 011111 0111 12 21 344333 3579999999999 99 999999999999999976 75222
Q ss_pred CcEEEEeeCCC
Q 003769 722 KDSIIIFSCDS 732 (796)
Q Consensus 722 ~n~IiilTsn~ 732 (796)
.++.||.|+|.
T Consensus 338 arf~VIAA~NP 348 (506)
T 3f8t_A 338 ARCAVLAAINP 348 (506)
T ss_dssp CCCEEEEEECC
T ss_pred CCeEEEEEeCc
Confidence 46778889985
No 187
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=96.82 E-value=0.00062 Score=75.30 Aligned_cols=56 Identities=21% Similarity=0.243 Sum_probs=40.2
Q ss_pred ChHHHHHHHHHHhh---ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeeccccc
Q 003769 192 DSDDVMSVLNALIN---KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFR 254 (796)
Q Consensus 192 r~~ei~~vi~~L~r---~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~ 254 (796)
....++.+.+.+.+ ...++++.|++|+|||.+++.+...-.+ ++..|+.+|.+++.
T Consensus 142 ~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r-------~~~~fv~v~~~~~~ 200 (387)
T 1ny5_A 142 ESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDR-------SKEPFVALNVASIP 200 (387)
T ss_dssp CSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTT-------TTSCEEEEETTTSC
T ss_pred ccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCC-------CCCCeEEEecCCCC
Confidence 34455666555554 6677888999999999999988765322 34679999987653
No 188
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.81 E-value=0.0022 Score=72.73 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=30.0
Q ss_pred HHHHHhh--ccCceEEEcCCcccHHHHHHHHHHHHHc
Q 003769 199 VLNALIN--KKRNTVIVGGNLAAIEGVIRGIIDQFER 233 (796)
Q Consensus 199 vi~~L~r--~k~n~vLvGepGvGKTaiv~~la~ri~~ 233 (796)
+++.|.. +....+|+|+||||||+++..|+..+..
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 6788876 6677899999999999999999987764
No 189
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.64 E-value=0.0022 Score=61.78 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=22.3
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
+..++|+|+||+||||+++.|++++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3568899999999999999999976
No 190
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.61 E-value=0.016 Score=64.28 Aligned_cols=135 Identities=11% Similarity=0.095 Sum_probs=73.7
Q ss_pred HHHHHHHhh--ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecc---------------cccc-cch
Q 003769 197 MSVLNALIN--KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLF---------------SFRN-QSK 258 (796)
Q Consensus 197 ~~vi~~L~r--~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~---------------~l~a-~~r 258 (796)
-++|+.+.. +...+.|+|+||+|||+++..|+..|.+.. | +..++.+=++ .+++ ..-
T Consensus 162 iraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~-~----~v~~I~~lIGER~~Ev~~~~~~~~~~vV~atad 236 (422)
T 3ice_A 162 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNH-P----DCVLMVLLIDERPEEVTEMQRLVKGEVVASTFD 236 (422)
T ss_dssp HHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHC-T----TSEEEEEEESSCHHHHHHHHTTCSSEEEEECTT
T ss_pred ceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcC-C----CeeEEEEEecCChHHHHHHHHHhCeEEEEeCCC
Confidence 467888887 788899999999999999999998876531 1 2223222111 0111 000
Q ss_pred HHHHHHHHH------HHHHHHhccCCCEEEEEcchhhhhhhhcccCCCC-ccccCCCcchhHHHHHHHHHHHhhhcC---
Q 003769 259 GEVEQKLVE------LSCHVKSYMGRGIVLYLGDLKWVAEFWANYYGGD-EQKRNNNNYCVEEYVVMEIKRLVFEIG--- 328 (796)
Q Consensus 259 ge~E~rl~~------l~~~v~~~~~~~~ILfIDElh~l~~~~~~~~G~~-~g~~~~~~~~~~d~~~~eLk~L~~~~~--- 328 (796)
.-...|+.- +-+..+.. +..|+||+|++..++.+....+... +-.+ +| |. ....-. ++.|....+
T Consensus 237 ep~~~r~~~a~~alt~AEyfrd~-G~dVLil~DslTR~A~A~revs~~~Ge~ps-~G-yp-~~~~~~-~~rl~erA~~~~ 311 (422)
T 3ice_A 237 EPASRHVQVAEMVIEKAKRLVEH-KKDVIILLDSITRLARAYNTVVPASGKVLT-GG-VD-ANALHR-PKRFFGAARNVE 311 (422)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHT-SCEEEEEEECHHHHHHHHHHHSCCSSCBCS-SS-CB-HHHHHH-HHHHHTTCEEES
T ss_pred CCHHHHHHHHHHHHHHHHHHHhc-CCCEEEEEeCchHHHHHHHHHHHhcCCCCC-CC-cC-HHHHhh-hHHHHHhccccC
Confidence 011122221 11222222 7789999999999998763321111 1112 23 32 223222 667763211
Q ss_pred CCCcEEEEEecCh
Q 003769 329 ESERVWIMGIASF 341 (796)
Q Consensus 329 ~~G~l~~IGatT~ 341 (796)
..|.|+.|.+.+.
T Consensus 312 ~~GSIT~i~tvlv 324 (422)
T 3ice_A 312 EGGSLTIIATALI 324 (422)
T ss_dssp SSCEEEEEEEECC
T ss_pred CCcceeEEEEEEe
Confidence 2566777776553
No 191
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.49 E-value=0.0013 Score=66.90 Aligned_cols=96 Identities=19% Similarity=0.317 Sum_probs=54.4
Q ss_pred eEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCEEEE
Q 003769 605 TWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHRVFF 684 (796)
Q Consensus 605 ~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vvl 684 (796)
..+||.||.| +|||.+|.+||+.+.|.- +.+.-+.. + + +.+.|. -+.+|+
T Consensus 59 n~ili~GPPG--tGKTt~a~ala~~l~g~i----~~fans~s----~----------f----~l~~l~------~~kIii 108 (212)
T 1tue_A 59 NCLVFCGPAN--TGKSYFGMSFIHFIQGAV----ISFVNSTS----H----------F----WLEPLT------DTKVAM 108 (212)
T ss_dssp SEEEEESCGG--GCHHHHHHHHHHHHTCEE----CCCCCSSS----C----------G----GGGGGT------TCSSEE
T ss_pred cEEEEECCCC--CCHHHHHHHHHHHhCCCe----eeEEeccc----h----------h----hhcccC------CCCEEE
Confidence 3589999999 999999999999996543 22221100 0 0 011111 145899
Q ss_pred EcccccCCCChHHHHHHHHHHHHcceE-ecCCC-ceecCCcEEEEeeCCC
Q 003769 685 MEDLDDHKVDSCYCQKGLKQAIENGCI-ALADG-EIVPLKDSIIIFSCDS 732 (796)
Q Consensus 685 ~deieka~~~~~~v~~~l~q~~d~G~l-~d~~G-~~v~~~n~IiilTsn~ 732 (796)
|||++.+ -...+...+..++|.--+ -|..- ..+-.+..=+|+|||.
T Consensus 109 LDEad~~--~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~ 156 (212)
T 1tue_A 109 LDDATTT--CWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNI 156 (212)
T ss_dssp EEEECHH--HHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESS
T ss_pred EECCCch--hHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCC
Confidence 9999977 441333456666654321 12111 1122233468889995
No 192
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.38 E-value=0.0039 Score=81.25 Aligned_cols=79 Identities=15% Similarity=0.042 Sum_probs=56.1
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc----cchH------------HHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN----QSKG------------EVEQKLVELS 269 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a----~~rg------------e~E~rl~~l~ 269 (796)
+.++++|+||||||||+++.+++...... |.+++.++...... +..| ..|+-+..+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~-------G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT-------TCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHH
Confidence 78899999999999999999998876542 45666666553321 1112 2344555555
Q ss_pred HHHHhccCCCEEEEEcchhhhhhh
Q 003769 270 CHVKSYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 270 ~~v~~~~~~~~ILfIDElh~l~~~ 293 (796)
..+++ .++.+|||||+..+++.
T Consensus 1499 ~lvr~--~~~~lVVIDsi~al~p~ 1520 (2050)
T 3cmu_A 1499 ALARS--GAVDVIVVDSVAALTPK 1520 (2050)
T ss_dssp HHHHH--TCCSEEEESCGGGCCCH
T ss_pred HHHhc--CCCCEEEEcChhHhccc
Confidence 66666 57889999999888764
No 193
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.30 E-value=0.0033 Score=68.36 Aligned_cols=76 Identities=12% Similarity=0.077 Sum_probs=51.5
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCC--------------------CCCCCCceEEEeecccc-cc-cchHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQV--------------------PGDLRYAQFISLPLFSF-RN-QSKGEVEQ 263 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~v--------------------p~~L~~~~v~~l~~~~l-~a-~~rge~E~ 263 (796)
+++.++|+||+|+|||+++..||+++. +++ ++...++.-+.+|...+ .. -..++|.+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~-~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~ 117 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP-LEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRS 117 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC-EEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC-CcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHH
Confidence 445788999999999999999999763 110 34445555555555555 33 45688888
Q ss_pred HHHHHHHHHHhccCCCEEEEE
Q 003769 264 KLVELSCHVKSYMGRGIVLYL 284 (796)
Q Consensus 264 rl~~l~~~v~~~~~~~~ILfI 284 (796)
...++++++... ++++|++
T Consensus 118 ~a~~~i~~i~~~--g~~pIlv 136 (339)
T 3a8t_A 118 LAGKAVSEITGR--RKLPVLV 136 (339)
T ss_dssp HHHHHHHHHHHT--TCEEEEE
T ss_pred HHHHHHHHHHhc--CCeEEEE
Confidence 888888888763 4444443
No 194
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.29 E-value=0.00076 Score=91.00 Aligned_cols=113 Identities=14% Similarity=0.170 Sum_probs=72.2
Q ss_pred EEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCcccccc-------ccccCCCCCCCCCCchhhHHHHHHhCC
Q 003769 607 LLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCR-------TKKRSRDVELGCCSYIERLGLALNENP 679 (796)
Q Consensus 607 ~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~-------~~k~~~~~~~~~~~~~~~L~eavr~~P 679 (796)
+||+||+| +|||.+++.....+.+ ..++++++|...+.... ..++.+.. .| .++.+.+..-
T Consensus 1307 vLL~GptG--tGKT~li~~~L~~l~~---~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~--~G-----~~~~p~~~Gk 1374 (3245)
T 3vkg_A 1307 LILCGPPG--SGKTMTLTSTLRAFPD---FEVVSLNFSSATTPELLLKTFDHHCEYKRTPS--GE-----TVLRPTQLGK 1374 (3245)
T ss_dssp CEEESSTT--SSHHHHHHHHGGGCTT---EEEEEECCCTTCCHHHHHHHHHHHEEEEECTT--SC-----EEEEESSTTC
T ss_pred EEEECCCC--CCHHHHHHHHHHhCCC---CceEEEEeeCCCCHHHHHHHHhhcceEEeccC--CC-----cccCCCcCCc
Confidence 68999999 9999877665444443 34789999865211110 00000000 00 0111111122
Q ss_pred CEEEEEcccccCCCC----hHHHHHHHHHHHHcceEecC-CCceecCCcEEEEeeCCC
Q 003769 680 HRVFFMEDLDDHKVD----SCYCQKGLKQAIENGCIALA-DGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 680 ~~Vvl~deieka~~~----~~~v~~~l~q~~d~G~l~d~-~G~~v~~~n~IiilTsn~ 732 (796)
.-|+|+|||..+..| . .+..+|.|.+|.|.+-|. ++..+...|..||.|+|.
T Consensus 1375 ~~VlFiDDiNmp~~D~yGtQ-~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnP 1431 (3245)
T 3vkg_A 1375 WLVVFCDEINLPSTDKYGTQ-RVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNP 1431 (3245)
T ss_dssp EEEEEETTTTCCCCCTTSCC-HHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECC
T ss_pred eEEEEecccCCCCccccccc-cHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCC
Confidence 458999999999323 2 389999999999999985 456778899999999984
No 195
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.23 E-value=0.0081 Score=65.79 Aligned_cols=99 Identities=16% Similarity=0.263 Sum_probs=64.7
Q ss_pred cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEe-cCCCCcccccc---ccccCCCCCCCCCCchhhHHHHHH
Q 003769 601 KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNL-SSSQSRQDDCR---TKKRSRDVELGCCSYIERLGLALN 676 (796)
Q Consensus 601 ~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~-dms~~~~~~~~---~~k~~~~~~~~~~~~~~~L~eavr 676 (796)
.++.+.+++.||+| .|||++.+.|+.++-......++.+ |--++. ..+. +.. ...+....++.+.|..+++
T Consensus 120 ~~~~g~i~I~GptG--SGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~-~~~~~~~v~q--~~~~~~~~~~~~~La~aL~ 194 (356)
T 3jvv_A 120 DVPRGLVLVTGPTG--SGKSTTLAAMLDYLNNTKYHHILTIEDPIEFV-HESKKCLVNQ--REVHRDTLGFSEALRSALR 194 (356)
T ss_dssp HCSSEEEEEECSTT--SCHHHHHHHHHHHHHHHCCCEEEEEESSCCSC-CCCSSSEEEE--EEBTTTBSCHHHHHHHHTT
T ss_pred hCCCCEEEEECCCC--CCHHHHHHHHHhcccCCCCcEEEEccCcHHhh-hhccccceee--eeeccccCCHHHHHHHHhh
Confidence 34668999999999 9999999999998853310334443 222331 1110 000 0111122355578999999
Q ss_pred hCCCEEEEEcccccCCCChHHHHHHHHHHHHcce
Q 003769 677 ENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGC 710 (796)
Q Consensus 677 ~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~ 710 (796)
.+|. |||+||+- |+ +....++++..+|.
T Consensus 195 ~~Pd-villDEp~----d~-e~~~~~~~~~~~G~ 222 (356)
T 3jvv_A 195 EDPD-IILVGEMR----DL-ETIRLALTAAETGH 222 (356)
T ss_dssp SCCS-EEEESCCC----SH-HHHHHHHHHHHTTC
T ss_pred hCcC-EEecCCCC----CH-HHHHHHHHHHhcCC
Confidence 9985 78999995 56 88888888876654
No 196
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.19 E-value=0.015 Score=57.70 Aligned_cols=27 Identities=7% Similarity=-0.192 Sum_probs=22.9
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFE 232 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~ 232 (796)
....++|+|+||+|||+++..++..+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 455677899999999999999997664
No 197
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.15 E-value=0.0024 Score=73.73 Aligned_cols=39 Identities=10% Similarity=-0.014 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHHhh---ccCceEEEcCCcccHHHHHHHHHHH
Q 003769 192 DSDDVMSVLNALIN---KKRNTVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 192 r~~ei~~vi~~L~r---~k~n~vLvGepGvGKTaiv~~la~r 230 (796)
|++++.++.+.|.. ..+-++|+|++|+|||++|..++.+
T Consensus 129 R~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 129 RKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp CHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 99999999999974 3456778999999999999999764
No 198
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.08 E-value=0.0033 Score=61.08 Aligned_cols=33 Identities=12% Similarity=-0.066 Sum_probs=28.2
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEee
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLP 249 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~ 249 (796)
+++++|+|+||+|||++++.||+++ +..++..|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l----------~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT----------KRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH----------CCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh----------CCCEEECh
Confidence 5689999999999999999999986 45677665
No 199
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.08 E-value=0.0043 Score=61.36 Aligned_cols=96 Identities=10% Similarity=0.062 Sum_probs=52.7
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHcCCCCCce-EEecCCC-CccccccccccCCCC-CCCCCCchhhHHHHHHhCCCEE
Q 003769 606 WLLFLGADDHNHGKEKIAREIAKVVFGSHSNNF-TNLSSSQ-SRQDDCRTKKRSRDV-ELGCCSYIERLGLALNENPHRV 682 (796)
Q Consensus 606 ~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~-i~~dms~-~~~~~~~~~k~~~~~-~~~~~~~~~~L~eavr~~P~~V 682 (796)
-.++.||.| .|||+++..++..+.+...+-+ +...... ++ +.. +..+.+.. ......-...+.+.++ +++.|
T Consensus 5 i~vi~G~~g--sGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~-~~~-i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dv 79 (184)
T 2orw_A 5 LTVITGPMY--SGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYH-STM-IVSHSGNGVEAHVIERPEEMRKYIE-EDTRG 79 (184)
T ss_dssp EEEEEESTT--SSHHHHHHHHHHHHHHTTCEEEEEEEC-----C-CCE-ECC----CEECEEESSGGGGGGGCC-TTEEE
T ss_pred EEEEECCCC--CCHHHHHHHHHHHHHHCCCeEEEEeeccccccC-ccc-EEecCCCceeeEEECCHHHHHHHhc-CCCCE
Confidence 467999999 9999999877766544331222 2212111 11 111 11111100 0000011123333333 47899
Q ss_pred EEEcccccCCCChHHHHHHHHHHHHcc
Q 003769 683 FFMEDLDDHKVDSCYCQKGLKQAIENG 709 (796)
Q Consensus 683 vl~deieka~~~~~~v~~~l~q~~d~G 709 (796)
|+||||-.. ++ ++.+.|.++.++|
T Consensus 80 viIDE~Q~~--~~-~~~~~l~~l~~~~ 103 (184)
T 2orw_A 80 VFIDEVQFF--NP-SLFEVVKDLLDRG 103 (184)
T ss_dssp EEECCGGGS--CT-THHHHHHHHHHTT
T ss_pred EEEECcccC--CH-HHHHHHHHHHHCC
Confidence 999999998 89 8888888888764
No 200
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.07 E-value=0.023 Score=58.12 Aligned_cols=102 Identities=9% Similarity=-0.051 Sum_probs=59.4
Q ss_pred CCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCC-CCCCCCchhhHHHHHHh----
Q 003769 603 EQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDV-ELGCCSYIERLGLALNE---- 677 (796)
Q Consensus 603 ~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~-~~~~~~~~~~L~eavr~---- 677 (796)
+..-.++.||.| .|||+++..++..+-+.. ...+-+....+......+..+.|.. ..........+.+.+++
T Consensus 11 ~G~i~litG~mG--sGKTT~ll~~~~r~~~~g-~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~ 87 (223)
T 2b8t_A 11 IGWIEFITGPMF--AGKTAELIRRLHRLEYAD-VKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFN 87 (223)
T ss_dssp CCEEEEEECSTT--SCHHHHHHHHHHHHHHTT-CCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSC
T ss_pred CcEEEEEECCCC--CcHHHHHHHHHHHHHhcC-CEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhC
Confidence 445566789999 999999999886664443 3333342221101111222222211 00000112466777776
Q ss_pred CCCEEEEEcccccCCCChHHHHHHHHHHHHcce
Q 003769 678 NPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGC 710 (796)
Q Consensus 678 ~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~ 710 (796)
.++.||++||+.-- ++ ++...+..+.+.|.
T Consensus 88 ~~~dvViIDEaQ~l--~~-~~ve~l~~L~~~gi 117 (223)
T 2b8t_A 88 DETKVIGIDEVQFF--DD-RICEVANILAENGF 117 (223)
T ss_dssp TTCCEEEECSGGGS--CT-HHHHHHHHHHHTTC
T ss_pred CCCCEEEEecCccC--cH-HHHHHHHHHHhCCC
Confidence 46899999999987 88 77777766666554
No 201
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.02 E-value=0.0019 Score=65.03 Aligned_cols=21 Identities=10% Similarity=0.083 Sum_probs=17.4
Q ss_pred eEEEcCCcccHHHHHHHHHHH
Q 003769 210 TVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 210 ~vLvGepGvGKTaiv~~la~r 230 (796)
.+++|+||+|||+++..++..
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 467899999999998876554
No 202
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.97 E-value=0.015 Score=62.96 Aligned_cols=65 Identities=14% Similarity=0.127 Sum_probs=44.6
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecc-----------------------------cccc-c
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLF-----------------------------SFRN-Q 256 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~-----------------------------~l~a-~ 256 (796)
+..++|+||+|+|||+++..||+++ +..+++.|-- .+.. .
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l----------~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid~~~~~~~~ 74 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL----------PCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESY 74 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS----------CEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc----------CCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEeeccCccccc
Confidence 3468899999999999999999975 3456666521 1111 2
Q ss_pred chHHHHHHHHHHHHHHHhccCCCEEEE
Q 003769 257 SKGEVEQKLVELSCHVKSYMGRGIVLY 283 (796)
Q Consensus 257 ~rge~E~rl~~l~~~v~~~~~~~~ILf 283 (796)
..++|-+...++++++... +.++|+
T Consensus 75 ~~~~F~~~a~~~i~~i~~~--g~~~Il 99 (323)
T 3crm_A 75 SAAEFRADALAAMAKATAR--GRIPLL 99 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHT--TCEEEE
T ss_pred CHHHHHHHHHHHHHHHHHc--CCeEEE
Confidence 3577888888888877653 344444
No 203
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.78 E-value=0.03 Score=56.27 Aligned_cols=85 Identities=8% Similarity=-0.072 Sum_probs=50.1
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccc------c--------------------c-cch
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSF------R--------------------N-QSK 258 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l------~--------------------a-~~r 258 (796)
...-++|+||||+|||+++..++..+.... ...-.+..++.++.... . . ...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~-~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPI-DRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCG-GGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCch-hcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCH
Confidence 456677899999999999999998643210 00001234555554321 0 0 112
Q ss_pred HHHHHHHHHHHHHHHhccCCCEEEEEcchhhhhhh
Q 003769 259 GEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 259 ge~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~ 293 (796)
.+..+.+..+.+.++. .++-+|+|||+..+...
T Consensus 102 ~~~~~~~~~~~~~~~~--~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVE--SRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHHHHHHHHH--SCEEEEEEETSSGGGC-
T ss_pred HHHHHHHHHHHHHHhc--CCceEEEEeCchHHHHH
Confidence 2333344445555554 46789999999988754
No 204
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.68 E-value=0.028 Score=59.50 Aligned_cols=124 Identities=12% Similarity=0.025 Sum_probs=73.3
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCC-----ccccc---c
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQS-----RQDDC---R 652 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~-----~~~~~---~ 652 (796)
++|-++.+..+.+ +.. ..+++.||.| +|||.|++++++.+ + ...+.+++..+ ..... .
T Consensus 15 ~~gR~~el~~L~~-l~~-------~~v~i~G~~G--~GKT~L~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 15 FFDREKEIEKLKG-LRA-------PITLVLGLRR--TGKSSIIKIGINEL-N---LPYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp SCCCHHHHHHHHH-TCS-------SEEEEEESTT--SSHHHHHHHHHHHH-T---CCEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred hcChHHHHHHHHH-hcC-------CcEEEECCCC--CCHHHHHHHHHHhc-C---CCEEEEEchhhccccCCCHHHHHHH
Confidence 5666666666665 431 4889999999 99999999999887 2 23567776532 00000 0
Q ss_pred c-----------------cc-cCC--CCCCC--------CCCchhhHHHHHHhCC--CEEEEEcccccCCC--ChHHHHH
Q 003769 653 T-----------------KK-RSR--DVELG--------CCSYIERLGLALNENP--HRVFFMEDLDDHKV--DSCYCQK 700 (796)
Q Consensus 653 ~-----------------~k-~~~--~~~~~--------~~~~~~~L~eavr~~P--~~Vvl~deieka~~--~~~~v~~ 700 (796)
. .. ..+ .++.. .......+.+.+++.. .-||+|||++.++- .+ +++.
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~-~~~~ 159 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGV-NLLP 159 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTC-CCHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCch-hHHH
Confidence 0 00 000 01000 0122356777777642 56899999999732 24 6777
Q ss_pred HHHHHHHcceEecCCCceecCCcEEEEeeCC
Q 003769 701 GLKQAIENGCIALADGEIVPLKDSIIIFSCD 731 (796)
Q Consensus 701 ~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn 731 (796)
.|...++.. .+..||+|+.
T Consensus 160 ~l~~~~~~~------------~~~~~i~~g~ 178 (357)
T 2fna_A 160 ALAYAYDNL------------KRIKFIMSGS 178 (357)
T ss_dssp HHHHHHHHC------------TTEEEEEEES
T ss_pred HHHHHHHcC------------CCeEEEEEcC
Confidence 777776642 2556777664
No 205
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.62 E-value=0.0067 Score=60.05 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=28.5
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEee
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLP 249 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~ 249 (796)
...+++|+|+||+||||+++.|++++ +..++..|
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l----------~~~~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL----------NVPFIDLD 57 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH----------TCCEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc----------CCCEEcch
Confidence 56789999999999999999999987 35566655
No 206
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.61 E-value=0.024 Score=56.96 Aligned_cols=26 Identities=12% Similarity=0.270 Sum_probs=22.7
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
+.+-++|+||+|+|||++++.|+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 55667899999999999999999864
No 207
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.55 E-value=0.023 Score=55.25 Aligned_cols=28 Identities=11% Similarity=0.068 Sum_probs=23.9
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFER 233 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~ 233 (796)
++..++|+|+||+|||++++.|+.++..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3456789999999999999999998863
No 208
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.53 E-value=0.053 Score=63.01 Aligned_cols=28 Identities=21% Similarity=0.270 Sum_probs=24.6
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFER 233 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~ 233 (796)
.....++.|+||||||+++..++..+..
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~ 230 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAES 230 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4678889999999999999999987764
No 209
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.51 E-value=0.0083 Score=59.32 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=19.8
Q ss_pred eEEEcCCcccHHHHHHHHHHHHH
Q 003769 210 TVIVGGNLAAIEGVIRGIIDQFE 232 (796)
Q Consensus 210 ~vLvGepGvGKTaiv~~la~ri~ 232 (796)
.+++|++|+|||+++-.++.+..
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 56889999999999988887764
No 210
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.48 E-value=0.051 Score=55.60 Aligned_cols=41 Identities=12% Similarity=0.070 Sum_probs=28.8
Q ss_pred CCCChHHHHHHHHHHhhccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 189 LGRDSDDVMSVLNALINKKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 189 ldpr~~ei~~vi~~L~r~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
..||+-....+-.++. .++.+++||+|+|||.++-.++.+.
T Consensus 92 ~~l~~~Q~~ai~~~~~--~~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 92 ISLRDYQEKALERWLV--DKRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCCCHHHHHHHHHHTT--TSEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHHHh--CCCEEEEeCCCCCHHHHHHHHHHHc
Confidence 3446655554444333 4569999999999999998888764
No 211
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.46 E-value=0.022 Score=61.11 Aligned_cols=93 Identities=9% Similarity=0.020 Sum_probs=65.9
Q ss_pred CCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCc--eEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhC--
Q 003769 603 EQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNN--FTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNEN-- 678 (796)
Q Consensus 603 ~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~--~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~-- 678 (796)
-...+||.||+| .||++.+++|++.++...-+. .+.+| +..-+..|.+.++..
T Consensus 17 ~~~~yl~~G~e~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------------------~~~~~~~l~~~~~~~pl 73 (343)
T 1jr3_D 17 LRAAYLLLGNDP--LLLQESQDAVRQVAAAQGFEEHHTFSID---------------------PNTDWNAIFSLCQAMSL 73 (343)
T ss_dssp CCSEEEEEESCH--HHHHHHHHHHHHHHHHHTCCEEEEEECC---------------------TTCCHHHHHHHHHHHHH
T ss_pred CCcEEEEECCcH--HHHHHHHHHHHHHHHhCCCCeeEEEEec---------------------CCCCHHHHHHHhcCcCC
Confidence 445889999999 999999999999887432011 12222 111234666666654
Q ss_pred --CCEEEEEccccc-CCCChHHHHHHHHHHHHcceEecCCCceecCCcEEEEeeCCC
Q 003769 679 --PHRVFFMEDLDD-HKVDSCYCQKGLKQAIENGCIALADGEIVPLKDSIIIFSCDS 732 (796)
Q Consensus 679 --P~~Vvl~deiek-a~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~n~IiilTsn~ 732 (796)
+++||++||+++ . .. ..++.|+..+++ .=.+++||++++.
T Consensus 74 f~~~kvvii~~~~~kl--~~-~~~~aLl~~le~-----------p~~~~~~il~~~~ 116 (343)
T 1jr3_D 74 FASRQTLLLLLPENGP--NA-AINEQLLTLTGL-----------LHDDLLLIVRGNK 116 (343)
T ss_dssp CCSCEEEEEECCSSCC--CT-THHHHHHHHHTT-----------CBTTEEEEEEESC
T ss_pred ccCCeEEEEECCCCCC--Ch-HHHHHHHHHHhc-----------CCCCeEEEEEcCC
Confidence 489999999998 7 77 889999999964 1257888887753
No 212
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.46 E-value=0.018 Score=60.55 Aligned_cols=53 Identities=8% Similarity=0.135 Sum_probs=42.8
Q ss_pred ChHHHHHHHcCCChHHHHHHHHhhccCCCCCCCCCCCCCCChHHHHHHHHHHhh---ccCceEEEcCCcccHHHHHHHHH
Q 003769 152 PSVSRVMREAGFSSSQVKIKVEENVPLGICSQSTNKSLGRDSDDVMSVLNALIN---KKRNTVIVGGNLAAIEGVIRGII 228 (796)
Q Consensus 152 ~~~a~vL~~~Gis~~~l~~~v~~~v~~~~~s~~p~g~ldpr~~ei~~vi~~L~r---~k~n~vLvGepGvGKTaiv~~la 228 (796)
..+.++|+-.|+++..+...+... |.+ ++|+++|+||||||||.++.+||
T Consensus 73 n~i~~~l~~qg~~~~~~~~~l~~~---------------------------l~~~~~~~n~~~l~GppgtGKt~~a~ala 125 (267)
T 1u0j_A 73 NRIYKILELNGYDPQYAASVFLGW---------------------------ATKKFGKRNTIWLFGPATTGKTNIAEAIA 125 (267)
T ss_dssp CHHHHHHHHTTCCHHHHHHHHHHH---------------------------HTTCSTTCCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH---------------------------HhCCCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 346889999999999888877633 332 36779999999999999999999
Q ss_pred HHH
Q 003769 229 DQF 231 (796)
Q Consensus 229 ~ri 231 (796)
...
T Consensus 126 ~~~ 128 (267)
T 1u0j_A 126 HTV 128 (267)
T ss_dssp HHS
T ss_pred hhh
Confidence 863
No 213
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.46 E-value=0.042 Score=57.33 Aligned_cols=83 Identities=17% Similarity=0.307 Sum_probs=50.0
Q ss_pred cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCC-CCCceEEecCC-CCccccc-c-ccccCCCCCCCCCCchhhHHHHHH
Q 003769 601 KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGS-HSNNFTNLSSS-QSRQDDC-R-TKKRSRDVELGCCSYIERLGLALN 676 (796)
Q Consensus 601 ~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~-~~~~~i~~dms-~~~~~~~-~-~~k~~~~~~~~~~~~~~~L~eavr 676 (796)
-++-+.++++||+| .|||++.+.|+.++--. . ..++..+-. +|-.... . +.. ...+.....+...|..+++
T Consensus 22 i~~g~~v~i~Gp~G--sGKSTll~~l~g~~~~~~~-G~I~~~g~~i~~~~~~~~~~v~q--~~~gl~~~~l~~~la~aL~ 96 (261)
T 2eyu_A 22 HRKMGLILVTGPTG--SGKSTTIASMIDYINQTKS-YHIITIEDPIEYVFKHKKSIVNQ--REVGEDTKSFADALRAALR 96 (261)
T ss_dssp GCSSEEEEEECSTT--CSHHHHHHHHHHHHHHHCC-CEEEEEESSCCSCCCCSSSEEEE--EEBTTTBSCHHHHHHHHHH
T ss_pred hCCCCEEEEECCCC--ccHHHHHHHHHHhCCCCCC-CEEEEcCCcceeecCCcceeeeH--HHhCCCHHHHHHHHHHHHh
Confidence 35678999999999 99999999999987432 2 223332211 2211000 0 000 0011111234467899999
Q ss_pred hCCCEEEEEcccc
Q 003769 677 ENPHRVFFMEDLD 689 (796)
Q Consensus 677 ~~P~~Vvl~deie 689 (796)
.+|. |+|+||+-
T Consensus 97 ~~p~-illlDEp~ 108 (261)
T 2eyu_A 97 EDPD-VIFVGEMR 108 (261)
T ss_dssp HCCS-EEEESCCC
T ss_pred hCCC-EEEeCCCC
Confidence 9885 88999995
No 214
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.43 E-value=0.011 Score=60.03 Aligned_cols=51 Identities=14% Similarity=0.023 Sum_probs=37.5
Q ss_pred HHHHHHHcCCChHHHHHHHHhhccCCCCCCCCCCCCCCChHHHHHHHHHHhh--ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 154 VSRVMREAGFSSSQVKIKVEENVPLGICSQSTNKSLGRDSDDVMSVLNALIN--KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 154 ~a~vL~~~Gis~~~l~~~v~~~v~~~~~s~~p~g~ldpr~~ei~~vi~~L~r--~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
+.++|+=.|++...+...+.. .+.. ++++++++||||+|||+++.+||+.+
T Consensus 30 I~~~l~yq~~~~~~f~~~l~~---------------------------~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 30 IVQFLRYQQIEFITFLGALKS---------------------------FLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHTTCCHHHHHHHHHH---------------------------HHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHcCcCHHHHHHHHHH---------------------------HHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 466777667776666555442 1223 56779999999999999999999876
No 215
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.39 E-value=0.01 Score=57.21 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=22.1
Q ss_pred CceEEEcCCcccHHHHHHHHHHHH
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri 231 (796)
.+++|+|+||+|||++++.||.++
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999976
No 216
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.38 E-value=0.011 Score=57.27 Aligned_cols=26 Identities=8% Similarity=0.010 Sum_probs=23.7
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
++.+++|+|+||+|||++++.|++++
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999876
No 217
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.38 E-value=0.03 Score=62.33 Aligned_cols=75 Identities=8% Similarity=0.045 Sum_probs=52.2
Q ss_pred CceEEEcCCcccHHHHHHHHHHHHHc------------C------C-CCCCCCCceEEEeecccccc-cchHHHHHHHHH
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQFER------------G------Q-VPGDLRYAQFISLPLFSFRN-QSKGEVEQKLVE 267 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri~~------------~------~-vp~~L~~~~v~~l~~~~l~a-~~rge~E~rl~~ 267 (796)
.-++|.||+|+|||+++..||.++.. + . -++...++.-..+|...+.. -..++|.+-...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a~~ 82 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECMN 82 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHHHH
Confidence 44678899999999999999998632 0 0 11455566666666555544 357899999999
Q ss_pred HHHHHHhccCCCEEEEE
Q 003769 268 LSCHVKSYMGRGIVLYL 284 (796)
Q Consensus 268 l~~~v~~~~~~~~ILfI 284 (796)
+++++.+. +.+.|++
T Consensus 83 ~i~~i~~~--g~~pilV 97 (409)
T 3eph_A 83 AIEDIHRR--GKIPIVV 97 (409)
T ss_dssp HHHHHHTT--TCEEEEE
T ss_pred HHHHHHhc--CCCEEEE
Confidence 99998863 4454443
No 218
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.34 E-value=0.026 Score=56.10 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=20.4
Q ss_pred ceEEEcCCcccHHHHHHHHHHHH
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri 231 (796)
=+||+||+|+|||+|++.|..+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37889999999999999998764
No 219
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=95.33 E-value=0.032 Score=64.17 Aligned_cols=38 Identities=11% Similarity=-0.025 Sum_probs=32.4
Q ss_pred ChHHHHHHHHHHhh-c---cCceEEEcCCcccHHHHHHHHHH
Q 003769 192 DSDDVMSVLNALIN-K---KRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 192 r~~ei~~vi~~L~r-~---k~n~vLvGepGvGKTaiv~~la~ 229 (796)
|++++..+.+.|.. . .+-+.|+|++|+|||++|..++.
T Consensus 133 R~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 133 REYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred chHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 99999999999975 2 24456899999999999998885
No 220
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.33 E-value=0.011 Score=56.03 Aligned_cols=23 Identities=9% Similarity=0.109 Sum_probs=21.3
Q ss_pred ceEEEcCCcccHHHHHHHHHHHH
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri 231 (796)
.++|+|+||+||||+++.|++++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999986
No 221
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.26 E-value=0.01 Score=56.70 Aligned_cols=33 Identities=6% Similarity=0.021 Sum_probs=27.1
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEee
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLP 249 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~ 249 (796)
..|++|.|+||+|||++++.|+.++ |..++..|
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l----------g~~~id~D 39 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL----------KLEVLDTD 39 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH----------TCCEEEHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh----------CCCEEECh
Confidence 4689999999999999999999976 35666655
No 222
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.21 E-value=0.033 Score=60.69 Aligned_cols=78 Identities=13% Similarity=0.006 Sum_probs=47.5
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccc----h------------HHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQS----K------------GEVEQKLVELS 269 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~----r------------ge~E~rl~~l~ 269 (796)
...-++|+|+||+|||+++..++..+... +.+++.++...-.... . ...++-+.-+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~-------g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA-------GGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 56667889999999999999999877643 3345555543211100 0 01233222222
Q ss_pred HHHHhccCCCEEEEEcchhhhhh
Q 003769 270 CHVKSYMGRGIVLYLGDLKWVAE 292 (796)
Q Consensus 270 ~~v~~~~~~~~ILfIDElh~l~~ 292 (796)
..+++ .++-+|+||++..+..
T Consensus 133 ~l~~~--~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 133 MLVRS--GALDIIVIDSVAALVP 153 (349)
T ss_dssp HHHTT--TCCSEEEEECGGGCCC
T ss_pred HHHhc--CCCCEEEEcChHhhcc
Confidence 23333 4578999999999873
No 223
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.20 E-value=0.018 Score=62.13 Aligned_cols=74 Identities=8% Similarity=0.051 Sum_probs=46.8
Q ss_pred CceEEEcCCcccHHHHHHHHHHHHHc------------C-C----CC--CCCCCceEEEeecccccc-cchHHHHHHHHH
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQFER------------G-Q----VP--GDLRYAQFISLPLFSFRN-QSKGEVEQKLVE 267 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri~~------------~-~----vp--~~L~~~~v~~l~~~~l~a-~~rge~E~rl~~ 267 (796)
+-++|+||+|+|||+++..||+++.. + + -| +.+.++.-+.+|.-.+.. -..++|.+..++
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a~~ 83 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLATP 83 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHHHH
Confidence 34678899999999999999987521 0 0 00 223333334444433333 356888888899
Q ss_pred HHHHHHhccCCCEEEE
Q 003769 268 LSCHVKSYMGRGIVLY 283 (796)
Q Consensus 268 l~~~v~~~~~~~~ILf 283 (796)
.++.+.+. +.+.|+
T Consensus 84 ~i~~i~~~--gk~pIl 97 (322)
T 3exa_A 84 LITEIHER--GRLPFL 97 (322)
T ss_dssp HHHHHHHT--TCEEEE
T ss_pred HHHHHHhC--CCcEEE
Confidence 99888873 444444
No 224
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.19 E-value=0.011 Score=57.90 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=22.9
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~r 230 (796)
++.+++|+|+||+|||++++.|+.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999999999999986
No 225
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.18 E-value=0.045 Score=74.32 Aligned_cols=98 Identities=12% Similarity=0.137 Sum_probs=67.1
Q ss_pred EecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCEEEEEccc
Q 003769 609 FLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHRVFFMEDL 688 (796)
Q Consensus 609 f~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vvl~dei 688 (796)
..||.| +|||+++|.||+.+ |.. ++.|++++. ++.... +..+..++.. -.-.+||||
T Consensus 609 ~~GPaG--tGKTet~k~La~~l-gr~---~~vfnC~~~-~d~~~~--------------g~i~~G~~~~--GaW~cfDEf 665 (3245)
T 3vkg_A 609 PFGPAG--TGKTETVKALGSQL-GRF---VLVFCCDEG-FDLQAM--------------SRIFVGLCQC--GAWGCFDEF 665 (3245)
T ss_dssp EECSTT--SSHHHHHHHHHHHT-TCC---EEEEECSSC-CCHHHH--------------HHHHHHHHHH--TCEEEEETT
T ss_pred CCCCCC--CCHHHHHHHHHHHh-CCe---EEEEeCCCC-CCHHHH--------------HHHHhhHhhc--CcEEEehhh
Confidence 679999 99999999999998 755 899999854 222211 0112233322 234589999
Q ss_pred ccCCCChHHHHHHHHHHHH---------cceEecCCCceecCC-cEEEEeeCCC
Q 003769 689 DDHKVDSCYCQKGLKQAIE---------NGCIALADGEIVPLK-DSIIIFSCDS 732 (796)
Q Consensus 689 eka~~~~~~v~~~l~q~~d---------~G~l~d~~G~~v~~~-n~IiilTsn~ 732 (796)
.++ ++ +|+..+.|.+. ..+++-..|++|.+. ++-|++|.|.
T Consensus 666 Nrl--~~-~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNp 716 (3245)
T 3vkg_A 666 NRL--EE-RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNP 716 (3245)
T ss_dssp TSS--CH-HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCC
T ss_pred hcC--CH-HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCC
Confidence 999 99 99999888666 445554447777765 4677889985
No 226
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.18 E-value=0.06 Score=60.51 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=27.1
Q ss_pred HHHHHhhccCceEEEcCCcccHHHHHHHHHHHHHcC
Q 003769 199 VLNALINKKRNTVIVGGNLAAIEGVIRGIIDQFERG 234 (796)
Q Consensus 199 vi~~L~r~k~n~vLvGepGvGKTaiv~~la~ri~~~ 234 (796)
++..+.+.+.+.+|.|+||||||+++..++..+...
T Consensus 37 ~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 37 VMKAIKEKKHHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 333343334488889999999999999999888654
No 227
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.15 E-value=0.013 Score=56.89 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=22.0
Q ss_pred CceEEEcCCcccHHHHHHHHHHHH
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri 231 (796)
..++|+|+||+|||++++.|+.++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468899999999999999999976
No 228
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.09 E-value=0.048 Score=57.57 Aligned_cols=50 Identities=14% Similarity=0.118 Sum_probs=38.6
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCC
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSS 644 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms 644 (796)
++|.++.+..+.+.+.. . ..+++.||.| +|||.|++++++.. + .+.+++.
T Consensus 14 ~~gR~~el~~L~~~l~~---~---~~v~i~G~~G--~GKT~Ll~~~~~~~-~-----~~~~~~~ 63 (350)
T 2qen_A 14 IFDREEESRKLEESLEN---Y---PLTLLLGIRR--VGKSSLLRAFLNER-P-----GILIDCR 63 (350)
T ss_dssp SCSCHHHHHHHHHHHHH---C---SEEEEECCTT--SSHHHHHHHHHHHS-S-----EEEEEHH
T ss_pred cCChHHHHHHHHHHHhc---C---CeEEEECCCc--CCHHHHHHHHHHHc-C-----cEEEEee
Confidence 67777777887776653 1 5889999999 99999999999875 2 4556654
No 229
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.01 E-value=0.031 Score=55.27 Aligned_cols=24 Identities=8% Similarity=-0.195 Sum_probs=20.9
Q ss_pred ccCceEEEcCCcccHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ 229 (796)
...-++|+|+||+|||+++..++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445667899999999999999998
No 230
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.95 E-value=0.064 Score=53.90 Aligned_cols=81 Identities=9% Similarity=0.061 Sum_probs=51.0
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeeccc---------ccccc-----------------hH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFS---------FRNQS-----------------KG 259 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~---------l~a~~-----------------rg 259 (796)
.+.++++++.+|.|||+++-|+|.|.... |.+|..+..-. +.... +.
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~-------G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~ 99 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGH-------GKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNRE 99 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHT-------TCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcH
Confidence 67799999999999999999999998754 45555553211 11111 01
Q ss_pred HHHHHHHHHHHHHHhcc--CCCEEEEEcchhhhhhh
Q 003769 260 EVEQKLVELSCHVKSYM--GRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 260 e~E~rl~~l~~~v~~~~--~~~~ILfIDElh~l~~~ 293 (796)
+-+......++.++... +.--+|++||+-..+..
T Consensus 100 ~~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~ 135 (196)
T 1g5t_A 100 ADTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAY 135 (196)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccC
Confidence 11233333334343321 34579999999988776
No 231
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.95 E-value=0.059 Score=55.74 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=21.0
Q ss_pred ceEEEcCCcccHHHHHHHHHHHH
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri 231 (796)
.++|+|+||+|||++++.||.++
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 46889999999999999999876
No 232
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=94.89 E-value=0.53 Score=45.82 Aligned_cols=27 Identities=4% Similarity=-0.027 Sum_probs=20.1
Q ss_pred ccCceEEEcCCcccHHHHH-HHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVI-RGIIDQFE 232 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv-~~la~ri~ 232 (796)
..+++++.+|+|+|||.+. -.+..++.
T Consensus 37 ~~~~~li~~~TGsGKT~~~~~~~~~~l~ 64 (207)
T 2gxq_A 37 EGKDLIGQARTGTGKTLAFALPIAERLA 64 (207)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CCCCEEEECCCCChHHHHHHHHHHHHHh
Confidence 3678999999999999874 44445543
No 233
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.88 E-value=0.022 Score=55.35 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=23.4
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
+...++|+|+||+||||+++.|++++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999999876
No 234
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.83 E-value=0.015 Score=56.45 Aligned_cols=25 Identities=4% Similarity=0.100 Sum_probs=22.4
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
+..++|+|+||+||||+++.|+.++
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4567899999999999999999876
No 235
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.79 E-value=0.016 Score=54.60 Aligned_cols=22 Identities=9% Similarity=0.078 Sum_probs=19.3
Q ss_pred CceEEEcCCcccHHHHHHHHHHH
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~r 230 (796)
..++|+|+||+||||+++.| .+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 45789999999999999999 54
No 236
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.78 E-value=0.03 Score=59.21 Aligned_cols=26 Identities=8% Similarity=0.068 Sum_probs=22.4
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
.+..++|+|+||+||||+++.|+.+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567889999999999999999875
No 237
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.75 E-value=0.039 Score=57.13 Aligned_cols=40 Identities=8% Similarity=-0.024 Sum_probs=29.3
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccc
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSF 253 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l 253 (796)
...++|+|.||+|||++++.|+.++... |..++.++...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~-------g~~~i~~~~D~~ 43 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKN-------NIDVIVLGSDLI 43 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT-------TCCEEEECTHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhC-------CCEEEEECchHH
Confidence 3468899999999999999999987532 345664444343
No 238
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.75 E-value=0.061 Score=59.07 Aligned_cols=82 Identities=17% Similarity=0.319 Sum_probs=51.5
Q ss_pred cCCCeEEEEecCCCCCchHHHHHHHHHHHHcCC-CCCceEEecCC-CCcccccc---ccccCCCCCCCCCCchhhHHHHH
Q 003769 601 KKEQTWLLFLGADDHNHGKEKIAREIAKVVFGS-HSNNFTNLSSS-QSRQDDCR---TKKRSRDVELGCCSYIERLGLAL 675 (796)
Q Consensus 601 ~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~-~~~~~i~~dms-~~~~~~~~---~~k~~~~~~~~~~~~~~~L~eav 675 (796)
-++.+.++++||+| .|||++.+.|+.++-.. . ..++.++-. ++. .... +.. ...+.....+...|..++
T Consensus 133 ~~~g~~i~ivG~~G--sGKTTll~~l~~~~~~~~~-g~I~~~e~~~e~~-~~~~~~~v~Q--~~~g~~~~~~~~~l~~~L 206 (372)
T 2ewv_A 133 HRKMGLILVTGPTG--SGKSTTIASMIDYINQTKS-YHIITIEDPIEYV-FKHKKSIVNQ--REVGEDTKSFADALRAAL 206 (372)
T ss_dssp TSSSEEEEEECSSS--SSHHHHHHHHHHHHHHHSC-CEEEEEESSCCSC-CCCSSSEEEE--EEBTTTBSCSHHHHHHHT
T ss_pred hcCCCEEEEECCCC--CCHHHHHHHHHhhcCcCCC-cEEEEecccHhhh-hccCceEEEe--eecCCCHHHHHHHHHHHh
Confidence 35678999999999 99999999999988543 2 345455422 110 0000 000 000001123456889999
Q ss_pred HhCCCEEEEEcccc
Q 003769 676 NENPHRVFFMEDLD 689 (796)
Q Consensus 676 r~~P~~Vvl~deie 689 (796)
+.+|. +|++||+-
T Consensus 207 ~~~pd-~illdE~~ 219 (372)
T 2ewv_A 207 REDPD-VIFVGEMR 219 (372)
T ss_dssp TSCCS-EEEESCCC
T ss_pred hhCcC-EEEECCCC
Confidence 99885 88999995
No 239
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=94.71 E-value=0.026 Score=64.03 Aligned_cols=37 Identities=8% Similarity=0.153 Sum_probs=28.6
Q ss_pred ChHHHHHHHHHHhhccC-------ceEEEcCCcccHHHHHHHH-HH
Q 003769 192 DSDDVMSVLNALINKKR-------NTVIVGGNLAAIEGVIRGI-ID 229 (796)
Q Consensus 192 r~~ei~~vi~~L~r~k~-------n~vLvGepGvGKTaiv~~l-a~ 229 (796)
..+++++.+.++.-... |++|+|+||+ ||.+++.+ +.
T Consensus 217 G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~ 261 (506)
T 3f8t_A 217 GAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDH 261 (506)
T ss_dssp TCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHH
Confidence 34667777776654333 9999999999 99999999 54
No 240
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.70 E-value=0.042 Score=54.85 Aligned_cols=107 Identities=7% Similarity=0.045 Sum_probs=59.7
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEec--CC-CCccccccccccCCC--CCCCCCCchhhHHHHHHhCCC
Q 003769 606 WLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLS--SS-QSRQDDCRTKKRSRD--VELGCCSYIERLGLALNENPH 680 (796)
Q Consensus 606 ~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~d--ms-~~~~~~~~~~k~~~~--~~~~~~~~~~~L~eavr~~P~ 680 (796)
-.++.||.| .|||+.+..+|.-+-+.. ...+-+. .. .|+ +.. +..+.+. +.. +......+.+.+. ++|
T Consensus 10 i~v~~G~mg--sGKTT~ll~~a~r~~~~g-~kV~v~k~~~d~r~~-~~~-i~s~~g~~~~a~-~~~~~~~i~~~~~-~~~ 82 (191)
T 1xx6_A 10 VEVIVGPMY--SGKSEELIRRIRRAKIAK-QKIQVFKPEIDNRYS-KED-VVSHMGEKEQAV-AIKNSREILKYFE-EDT 82 (191)
T ss_dssp EEEEECSTT--SSHHHHHHHHHHHHHHTT-CCEEEEEEC--------CE-EECTTSCEEECE-EESSSTHHHHHCC-TTC
T ss_pred EEEEECCCC--CcHHHHHHHHHHHHHHCC-CEEEEEEeccCccch-HHH-HHhhcCCceeeE-eeCCHHHHHHHHh-ccC
Confidence 457899999 999988888886653333 2333332 22 231 222 2222221 100 0011134555444 479
Q ss_pred EEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCC
Q 003769 681 RVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLK 722 (796)
Q Consensus 681 ~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~ 722 (796)
.||++||+-.- ++ +....+..+.+.|.-.=..|...||+
T Consensus 83 dvViIDEaqfl--~~-~~v~~l~~l~~~~~~Vi~~Gl~~df~ 121 (191)
T 1xx6_A 83 EVIAIDEVQFF--DD-EIVEIVNKIAESGRRVICAGLDMDFR 121 (191)
T ss_dssp SEEEECSGGGS--CT-HHHHHHHHHHHTTCEEEEEECSBCTT
T ss_pred CEEEEECCCCC--CH-HHHHHHHHHHhCCCEEEEEecccccc
Confidence 99999999998 88 77777777667654433446555655
No 241
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.70 E-value=0.021 Score=54.38 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=22.0
Q ss_pred CceEEEcCCcccHHHHHHHHHHHH
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri 231 (796)
..++|+|+||+|||++++.|+.++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999976
No 242
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.69 E-value=0.052 Score=53.56 Aligned_cols=27 Identities=7% Similarity=-0.079 Sum_probs=24.2
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFE 232 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~ 232 (796)
....++|+|++|+||||+++.|+.++.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 566788999999999999999999875
No 243
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.68 E-value=0.071 Score=57.34 Aligned_cols=64 Identities=9% Similarity=0.108 Sum_probs=43.7
Q ss_pred ceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeec-----------------------------ccccc-cch
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPL-----------------------------FSFRN-QSK 258 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~-----------------------------~~l~a-~~r 258 (796)
-++|+||+|+|||+++..||+++. ..+++.|. -.+.. -..
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~~----------~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~ 81 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKILP----------VELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSA 81 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC----------EEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCH
T ss_pred EEEEECCCccCHHHHHHHHHHhCC----------CcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccH
Confidence 356789999999999999999852 34555442 22222 356
Q ss_pred HHHHHHHHHHHHHHHhccCCCEEEEE
Q 003769 259 GEVEQKLVELSCHVKSYMGRGIVLYL 284 (796)
Q Consensus 259 ge~E~rl~~l~~~v~~~~~~~~ILfI 284 (796)
++|.+...+.++++.+. +.+.|++
T Consensus 82 ~~f~~~a~~~i~~i~~~--g~~pilV 105 (316)
T 3foz_A 82 ADFRRDALAEMADITAA--GRIPLLV 105 (316)
T ss_dssp HHHHHHHHHHHHHHHHT--TCEEEEE
T ss_pred HHHHHHHHHHHHHHHhC--CCcEEEE
Confidence 78888888888888763 4444443
No 244
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.68 E-value=0.1 Score=57.76 Aligned_cols=37 Identities=14% Similarity=0.236 Sum_probs=32.3
Q ss_pred HHHHHHHhh--ccCceEEEcCCcccHHHHHHHHHHHHHc
Q 003769 197 MSVLNALIN--KKRNTVIVGGNLAAIEGVIRGIIDQFER 233 (796)
Q Consensus 197 ~~vi~~L~r--~k~n~vLvGepGvGKTaiv~~la~ri~~ 233 (796)
-++|+.|.- +.....|+|+||||||+++..|++.+..
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhh
Confidence 478888887 7888999999999999999999987763
No 245
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.67 E-value=0.052 Score=52.77 Aligned_cols=25 Identities=12% Similarity=0.296 Sum_probs=21.5
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
++-++|+||+|+||||+++.|+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3457799999999999999999865
No 246
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.65 E-value=0.044 Score=61.58 Aligned_cols=113 Identities=14% Similarity=0.115 Sum_probs=66.7
Q ss_pred CCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCC-ceEEecCCCCc------------c
Q 003769 582 PWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSN-NFTNLSSSQSR------------Q 648 (796)
Q Consensus 582 ~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~-~~i~~dms~~~------------~ 648 (796)
.+|.+|+..+...|.. +.+.+++.||.| +|||.+++.++..+-... . .++-+-.+... .
T Consensus 28 ~~Q~~av~~~~~~i~~-----~~~~~li~G~aG--TGKT~ll~~~~~~l~~~~-~~~il~~a~T~~Aa~~l~~~~~~~~~ 99 (459)
T 3upu_A 28 EGQKNAFNIVMKAIKE-----KKHHVTINGPAG--TGATTLTKFIIEALISTG-ETGIILAAPTHAAKKILSKLSGKEAS 99 (459)
T ss_dssp HHHHHHHHHHHHHHHS-----SSCEEEEECCTT--SCHHHHHHHHHHHHHHTT-CCCEEEEESSHHHHHHHHHHHSSCEE
T ss_pred HHHHHHHHHHHHHHhc-----CCCEEEEEeCCC--CCHHHHHHHHHHHHHhcC-CceEEEecCcHHHHHHHHhhhccchh
Confidence 5788898888777653 224899999999 999999999999987554 3 33333222000 0
Q ss_pred ccccccccCCCCCCCCCCchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHH
Q 003769 649 DDCRTKKRSRDVELGCCSYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIE 707 (796)
Q Consensus 649 ~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d 707 (796)
.-|+..+... ..+........ ...-....+.+|++||+-.. ++ ..+..|++.+.
T Consensus 100 T~h~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~iiiDE~~~~--~~-~~~~~l~~~~~ 153 (459)
T 3upu_A 100 TIHSILKINP-VTYEENVLFEQ-KEVPDLAKCRVLICDEVSMY--DR-KLFKILLSTIP 153 (459)
T ss_dssp EHHHHHTEEE-EECSSCEEEEE-CSCCCCSSCSEEEESCGGGC--CH-HHHHHHHHHSC
T ss_pred hHHHHhccCc-ccccccchhcc-cccccccCCCEEEEECchhC--CH-HHHHHHHHhcc
Confidence 0011000000 00000000000 00011235899999999998 99 99999999885
No 247
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.64 E-value=0.049 Score=56.12 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=22.6
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
.+..++|+|+||+||||+++.|+.++
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34567899999999999999999875
No 248
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.63 E-value=0.045 Score=54.49 Aligned_cols=27 Identities=7% Similarity=0.021 Sum_probs=24.1
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFE 232 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~ 232 (796)
....++|+|+||+||||+++.|+.++.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 556788999999999999999999875
No 249
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.59 E-value=0.022 Score=55.05 Aligned_cols=24 Identities=8% Similarity=0.109 Sum_probs=22.2
Q ss_pred ceEEEcCCcccHHHHHHHHHHHHH
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQFE 232 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri~ 232 (796)
.++|.|+||+||||+++.|++++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999885
No 250
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.57 E-value=0.11 Score=55.49 Aligned_cols=86 Identities=7% Similarity=-0.071 Sum_probs=51.3
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeeccccc--------c-c------------------ch
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFR--------N-Q------------------SK 258 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~--------a-~------------------~r 258 (796)
....++|+|+||+|||+++..++..+....--..+ +..++.++...-. + . ..
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~-~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGL-SGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCC-SCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCC-CCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCH
Confidence 56677889999999999999999865322000001 3456666654310 0 0 01
Q ss_pred HHHHHHHHHHHHHHHhccCCCEEEEEcchhhhhhh
Q 003769 259 GEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 259 ge~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~ 293 (796)
.++.+.+..+...+++. .+.-+|+||.+..+...
T Consensus 185 ~~~~~~l~~l~~~~~~~-~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKD-PSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp HHHHHHHHHHHHHHHHC-TTEEEEEETTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhc-cCCCEEEEeCcHHHhhh
Confidence 12223344555555542 34679999999999854
No 251
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.55 E-value=0.045 Score=60.10 Aligned_cols=78 Identities=17% Similarity=0.091 Sum_probs=48.0
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeeccccccc-c--------------h-HHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQ-S--------------K-GEVEQKLVELS 269 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~-~--------------r-ge~E~rl~~l~ 269 (796)
....++|.|+||+|||+++..++..+... +..++.++...-... + + ..+++-+..+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~-------g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA-------GGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC-------CCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 55677788999999999999999887643 334555554321110 0 0 12233333232
Q ss_pred HHHHhccCCCEEEEEcchhhhhh
Q 003769 270 CHVKSYMGRGIVLYLGDLKWVAE 292 (796)
Q Consensus 270 ~~v~~~~~~~~ILfIDElh~l~~ 292 (796)
..+++ .+.-+||||.+..+..
T Consensus 146 ~l~~~--~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 146 LLVRS--GAIDVVVVDSVAALTP 166 (366)
T ss_dssp HHHTT--TCCSEEEEECTTTCCC
T ss_pred HHHhc--CCCCEEEEeChHHhcc
Confidence 33333 4567999999999874
No 252
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.48 E-value=0.11 Score=58.48 Aligned_cols=36 Identities=8% Similarity=0.002 Sum_probs=27.6
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEee
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLP 249 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~ 249 (796)
+.-++++|+||+||||++..||..+.+. |.++.-++
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~-------G~kVllv~ 135 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKR-------GYKVGVVC 135 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT-------TCCEEEEE
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHC-------CCeEEEEe
Confidence 3456788999999999999999988753 45555444
No 253
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=94.46 E-value=0.069 Score=65.94 Aligned_cols=38 Identities=16% Similarity=0.074 Sum_probs=33.3
Q ss_pred ChHHHHHHHHHHhh--ccCceEEEcCCcccHHHHHHHHHH
Q 003769 192 DSDDVMSVLNALIN--KKRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 192 r~~ei~~vi~~L~r--~k~n~vLvGepGvGKTaiv~~la~ 229 (796)
|++++.++.+.|.. ..+-+.|+|++|+|||++|..++.
T Consensus 133 Re~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHH
Confidence 99999999999986 335566889999999999999986
No 254
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.45 E-value=0.076 Score=58.06 Aligned_cols=78 Identities=12% Similarity=0.019 Sum_probs=48.0
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc-c----c----------h-HHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN-Q----S----------K-GEVEQKLVELS 269 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a-~----~----------r-ge~E~rl~~l~ 269 (796)
....++|.|+||+|||+++..++..+... +.+++.+|...-.. . . . ...+ .+.+++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~-------g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e-~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE-QALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHH-HHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHH-HHHHHH
Confidence 56678889999999999999999877643 34566666521111 0 0 0 0112 233333
Q ss_pred HHHHhccCCCEEEEEcchhhhhh
Q 003769 270 CHVKSYMGRGIVLYLGDLKWVAE 292 (796)
Q Consensus 270 ~~v~~~~~~~~ILfIDElh~l~~ 292 (796)
+.+... .+.-+|+||.+..+..
T Consensus 134 ~~l~~~-~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 134 DALARS-GAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHHHHH-TCCSEEEEECGGGCCC
T ss_pred HHHHhc-cCCCEEEEcCHHHhcc
Confidence 333222 4567999999999874
No 255
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.44 E-value=0.023 Score=55.98 Aligned_cols=26 Identities=8% Similarity=0.093 Sum_probs=23.0
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
.+..++|+|+||+||||+++.|+.++
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44578899999999999999999876
No 256
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.42 E-value=0.22 Score=55.77 Aligned_cols=39 Identities=5% Similarity=-0.043 Sum_probs=29.5
Q ss_pred CceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeeccc
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFS 252 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~ 252 (796)
+.++++|++|+||||++..||..+... .|+++.-+|...
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~------~G~kVllvd~D~ 139 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREK------HKKKVLVVSADV 139 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT------SCCCEEEEECCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHh------cCCeEEEEecCC
Confidence 467788999999999999999988752 145666655543
No 257
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.40 E-value=0.024 Score=54.85 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=22.1
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
+..++|+|+||+||||+++.|+.++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999999875
No 258
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.38 E-value=0.065 Score=58.64 Aligned_cols=91 Identities=12% Similarity=-0.017 Sum_probs=54.5
Q ss_pred ChHHHHHHHHHHhh--ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc--------------
Q 003769 192 DSDDVMSVLNALIN--KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN-------------- 255 (796)
Q Consensus 192 r~~ei~~vi~~L~r--~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a-------------- 255 (796)
.-.++.+++.+ .- ...-++|+||||+|||+++..++..+... +.+++.++......
T Consensus 45 G~~~LD~~Lg~-GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~-------gg~VlyId~E~s~~~~ra~rlgv~~~~l 116 (356)
T 3hr8_A 45 GSLAIDIATGV-GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM-------GGVAAFIDAEHALDPVYAKNLGVDLKSL 116 (356)
T ss_dssp SCHHHHHHTSS-SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHHTCCGGGC
T ss_pred CCHHHHHHhcc-CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEecccccchHHHHHcCCchhhh
Confidence 44555554320 12 45667788999999999999999877642 34455555432110
Q ss_pred --cchHHHHHHHHHHHHHHHhccCCCEEEEEcchhhhhh
Q 003769 256 --QSKGEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAE 292 (796)
Q Consensus 256 --~~rge~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~ 292 (796)
.....+++-+..+...++. ...-+++||.+..+..
T Consensus 117 ~i~~~~~~e~~l~~~~~l~~~--~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 117 LISQPDHGEQALEIVDELVRS--GVVDLIVVDSVAALVP 153 (356)
T ss_dssp EEECCSSHHHHHHHHHHHHHT--SCCSEEEEECTTTCCC
T ss_pred hhhhccCHHHHHHHHHHHhhh--cCCCeEEehHhhhhcC
Confidence 0111234444434344444 4567999999998875
No 259
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.37 E-value=0.025 Score=55.11 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=23.1
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
.+..++|+|+||+||||+++.|++++
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678899999999999999999976
No 260
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.33 E-value=0.027 Score=56.41 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=23.0
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
+..+++|+|+||+||||+++.|+.++
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34578899999999999999999976
No 261
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.33 E-value=0.046 Score=67.87 Aligned_cols=40 Identities=10% Similarity=0.001 Sum_probs=33.6
Q ss_pred ChHHHHHHHHHHhh---ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 192 DSDDVMSVLNALIN---KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 192 r~~ei~~vi~~L~r---~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
|++++.++.+.|.. ..+-+.|+|++|+|||++|..++.+.
T Consensus 129 R~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~ 171 (1249)
T 3sfz_A 129 RKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDH 171 (1249)
T ss_dssp CHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcCh
Confidence 99999999999964 33446689999999999999888753
No 262
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.29 E-value=0.029 Score=57.46 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=21.8
Q ss_pred CceEEEcCCcccHHHHHHHHHHHHHcC
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQFERG 234 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri~~~ 234 (796)
.=.++.|+||+|||+.+-+++.+....
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~ 39 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYA 39 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 345567999999999999999988643
No 263
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.29 E-value=0.025 Score=57.08 Aligned_cols=23 Identities=13% Similarity=0.017 Sum_probs=20.8
Q ss_pred ceEEEcCCcccHHHHHHHHHHHH
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri 231 (796)
+++|+||||+||+|.++-|+++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999875
No 264
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.27 E-value=0.2 Score=56.75 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=32.7
Q ss_pred HHHHHHhh--ccCceEEEcCCcccHHHHHHHHHHHHHcC
Q 003769 198 SVLNALIN--KKRNTVIVGGNLAAIEGVIRGIIDQFERG 234 (796)
Q Consensus 198 ~vi~~L~r--~k~n~vLvGepGvGKTaiv~~la~ri~~~ 234 (796)
++|+.|.- +.....|+|++|||||+++..++..+.+.
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~ 180 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKA 180 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTTT
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHhh
Confidence 78888987 88889999999999999999999987543
No 265
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.27 E-value=0.031 Score=55.05 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=23.2
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
....++|+|+||+||||+++.|+.++
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578899999999999999999986
No 266
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.26 E-value=0.024 Score=54.12 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=22.4
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
+..++|+|+||+||||+++.|+..+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999875
No 267
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.25 E-value=0.021 Score=55.14 Aligned_cols=25 Identities=8% Similarity=0.105 Sum_probs=22.2
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
+..++|+|+||+||||+++.|++++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999999875
No 268
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.22 E-value=0.074 Score=69.58 Aligned_cols=80 Identities=10% Similarity=0.008 Sum_probs=54.3
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeeccccccc-chHH--------------HHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQ-SKGE--------------VEQKLVELSC 270 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~-~rge--------------~E~rl~~l~~ 270 (796)
..+|++|+|+||+|||+++..++..-.+. |.+++.+++...... +... ..+....+.+
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~-------Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~ 1152 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD 1152 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT-------TCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHH
Confidence 78899999999999999999998766533 456777776654431 1000 0122334444
Q ss_pred HHHhccCCCEEEEEcchhhhhhh
Q 003769 271 HVKSYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 271 ~v~~~~~~~~ILfIDElh~l~~~ 293 (796)
.+... ..+.+|+||++..|...
T Consensus 1153 ~l~~~-~~~dlvVIDsl~~L~~~ 1174 (2050)
T 3cmu_A 1153 ALARS-GAVDVIVVDSVAALTPK 1174 (2050)
T ss_dssp HHHHH-TCCSEEEESCGGGCCCH
T ss_pred HHHHh-CCCCEEEECCccccccc
Confidence 44443 56899999999999654
No 269
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.16 E-value=0.031 Score=56.95 Aligned_cols=26 Identities=15% Similarity=0.325 Sum_probs=21.7
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
+.+-++|+||||+||+|.++-|+++.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34456678999999999999999875
No 270
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.16 E-value=0.028 Score=54.23 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=22.1
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
+..++|+|+||+||||+++.|+.++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999999875
No 271
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.16 E-value=0.059 Score=56.67 Aligned_cols=91 Identities=13% Similarity=0.224 Sum_probs=53.3
Q ss_pred CeEEEEecCCCCCchHHHHHHHHHHH--HcCCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCC-
Q 003769 604 QTWLLFLGADDHNHGKEKIAREIAKV--VFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPH- 680 (796)
Q Consensus 604 ~~~~lf~Gp~g~~vGKt~lAk~LA~~--~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~- 680 (796)
..-++|.||.| +|||.+|++||.. ++|. ++-+. .+ +...+. +.
T Consensus 104 ~n~~~l~Gppg--tGKt~~a~ala~~~~l~G~-------vn~~~----~~----------f~l~~~-----------~~k 149 (267)
T 1u0j_A 104 RNTIWLFGPAT--TGKTNIAEAIAHTVPFYGC-------VNWTN----EN----------FPFNDC-----------VDK 149 (267)
T ss_dssp CCEEEEECSTT--SSHHHHHHHHHHHSSCEEE-------CCTTC----SS----------CTTGGG-----------SSC
T ss_pred CcEEEEECCCC--CCHHHHHHHHHhhhcccce-------eeccc----cc----------cccccc-----------ccc
Confidence 34699999999 9999999999996 3432 11110 11 100110 11
Q ss_pred EEEEEcccccCCCChHHHHHHHHHHHHcceEe-cCCCc-eecCCcEEEEeeCCC
Q 003769 681 RVFFMEDLDDHKVDSCYCQKGLKQAIENGCIA-LADGE-IVPLKDSIIIFSCDS 732 (796)
Q Consensus 681 ~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~-d~~G~-~v~~~n~IiilTsn~ 732 (796)
.|+|.||..-- . +.+..++.+++-+.++ |.+.+ .+-.+.+=+|+|||.
T Consensus 150 ~i~l~Ee~~~~---~-d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~ 199 (267)
T 1u0j_A 150 MVIWWEEGKMT---A-KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNT 199 (267)
T ss_dssp SEEEECSCCEE---T-TTHHHHHHHHTTCCEEC------CCEECCCCEEEEESS
T ss_pred EEEEeccccch---h-HHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecC
Confidence 46677776544 3 5666788888644333 32221 334567788999995
No 272
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.13 E-value=0.024 Score=56.47 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.9
Q ss_pred ceEEEcCCcccHHHHHHHHHHHH
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri 231 (796)
+++|+|+||+||||+++.|+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999864
No 273
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.12 E-value=0.11 Score=52.20 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=20.9
Q ss_pred ccCceEEEcCCcccHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ 229 (796)
...-++|+||+|+|||++++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 556777899999999999999983
No 274
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.08 E-value=0.029 Score=53.23 Aligned_cols=23 Identities=9% Similarity=-0.026 Sum_probs=21.2
Q ss_pred ceEEEcCCcccHHHHHHHHHHHH
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri 231 (796)
+++|.|+||+|||++++.|+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999976
No 275
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.07 E-value=0.032 Score=56.54 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=23.6
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
...+++|+|+||+||||+++.|+.++
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999986
No 276
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.05 E-value=0.029 Score=56.51 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.5
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
+...++|+|+||+||||+++.|+.++
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999999999999999999864
No 277
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.03 E-value=0.028 Score=54.22 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=23.0
Q ss_pred CceEEEcCCcccHHHHHHHHHHHHHc
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQFER 233 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri~~ 233 (796)
..++|.|+||+||||+++.|+.++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46789999999999999999998753
No 278
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.02 E-value=0.12 Score=56.16 Aligned_cols=79 Identities=11% Similarity=0.133 Sum_probs=45.1
Q ss_pred CceEEEcCCcccHHHHHHHHHHHHHc------------C-CC------CCCCCCceEEEeecccccc-cchHHHHHHHHH
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQFER------------G-QV------PGDLRYAQFISLPLFSFRN-QSKGEVEQKLVE 267 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri~~------------~-~v------p~~L~~~~v~~l~~~~l~a-~~rge~E~rl~~ 267 (796)
..++|+||+|+|||+++..||.++.- + ++ ++...+..-.-+++-.... ...++|.+....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~~a~~ 87 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRAEK 87 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHHHHHH
Confidence 45778999999999999999998630 0 00 1122222211122111111 355778777777
Q ss_pred HHHHHHhccCCCEEEEEcchh
Q 003769 268 LSCHVKSYMGRGIVLYLGDLK 288 (796)
Q Consensus 268 l~~~v~~~~~~~~ILfIDElh 288 (796)
.+..+.. .+..+|+++=.+
T Consensus 88 ~i~~i~~--~g~~~IlvGGt~ 106 (340)
T 3d3q_A 88 YIKDITR--RGKVPIIAGGTG 106 (340)
T ss_dssp HHHHHHH--TTCEEEEECCCH
T ss_pred HHHHHHh--CCCcEEEECChh
Confidence 7777764 345666654433
No 279
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.99 E-value=0.029 Score=55.71 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=21.0
Q ss_pred ceEEEcCCcccHHHHHHHHHHHH
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri 231 (796)
+++|+|+||+||||+++.|+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 280
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.96 E-value=0.035 Score=55.61 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=22.6
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
..+++|+|+||+||||+++.|+.++
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999999986
No 281
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.95 E-value=0.044 Score=54.68 Aligned_cols=26 Identities=12% Similarity=0.037 Sum_probs=22.2
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
.+.-++|+||+|+||||+++.|+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 44557889999999999999999864
No 282
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.89 E-value=0.078 Score=68.50 Aligned_cols=80 Identities=10% Similarity=0.005 Sum_probs=56.2
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccch---------------HHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSK---------------GEVEQKLVELSC 270 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~r---------------ge~E~rl~~l~~ 270 (796)
...+++|+|+||+|||+++..++...... |.+++.++........+ .+..+.+.++++
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~~-------G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~ 105 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD 105 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhC-------CCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHH
Confidence 67789999999999999999998765532 45677777654432111 112445667777
Q ss_pred HHHhccCCCEEEEEcchhhhhhh
Q 003769 271 HVKSYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 271 ~v~~~~~~~~ILfIDElh~l~~~ 293 (796)
.+... ....+|+||+|..+...
T Consensus 106 ~L~~~-~~~~LVVIDSLt~L~~~ 127 (1706)
T 3cmw_A 106 ALARS-GAVDVIVVDSVAALTPK 127 (1706)
T ss_dssp HHHHH-TCCSEEEESCSTTCCCH
T ss_pred HHHhc-cCCCEEEEcchhhhccc
Confidence 76543 45689999999988764
No 283
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.84 E-value=0.24 Score=53.66 Aligned_cols=38 Identities=13% Similarity=0.057 Sum_probs=28.2
Q ss_pred HHHHHHHHhh---ccCceEEEcCCcccHHHHHHHHHHHHHc
Q 003769 196 VMSVLNALIN---KKRNTVIVGGNLAAIEGVIRGIIDQFER 233 (796)
Q Consensus 196 i~~vi~~L~r---~k~n~vLvGepGvGKTaiv~~la~ri~~ 233 (796)
.+.++..|.. ....++|+|.||||||+++..|+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4444555543 3446788999999999999999988753
No 284
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.78 E-value=0.06 Score=55.23 Aligned_cols=26 Identities=4% Similarity=-0.013 Sum_probs=22.8
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
.+..++|+|+||+||||+++.|+++.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 44578899999999999999999875
No 285
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.71 E-value=0.51 Score=53.04 Aligned_cols=97 Identities=15% Similarity=0.112 Sum_probs=55.5
Q ss_pred CCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCcccccc----ccccCCCCCC---CCCCchh---hHH
Q 003769 603 EQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCR----TKKRSRDVEL---GCCSYIE---RLG 672 (796)
Q Consensus 603 ~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~----~~k~~~~~~~---~~~~~~~---~L~ 672 (796)
+...++|.||+| +|||+++..||.++-... ....-++..-|...... .....+-|-| .+..... ...
T Consensus 99 ~p~vIlivG~~G--~GKTTt~~kLA~~l~~~G-~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al 175 (443)
T 3dm5_A 99 KPTILLMVGIQG--SGKTTTVAKLARYFQKRG-YKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGV 175 (443)
T ss_dssp SSEEEEEECCTT--SSHHHHHHHHHHHHHTTT-CCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHH
T ss_pred CCeEEEEECcCC--CCHHHHHHHHHHHHHHCC-CeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHH
Confidence 468999999999 999999999999887544 44544555434221100 0011111111 1222222 334
Q ss_pred HHHHhCCCEEEEEcccccCCCChHHHHHHHH
Q 003769 673 LALNENPHRVFFMEDLDDHKVDSCYCQKGLK 703 (796)
Q Consensus 673 eavr~~P~~Vvl~deieka~~~~~~v~~~l~ 703 (796)
+..+.+.|.||++|..=....+. ....-+.
T Consensus 176 ~~a~~~~~DvVIIDTaGrl~~d~-~lm~el~ 205 (443)
T 3dm5_A 176 DYFKSKGVDIIIVDTAGRHKEDK-ALIEEMK 205 (443)
T ss_dssp HHHHHTTCSEEEEECCCCSSCCH-HHHHHHH
T ss_pred HHHHhCCCCEEEEECCCcccchH-HHHHHHH
Confidence 45556789999999886662234 4444333
No 286
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.64 E-value=0.053 Score=52.39 Aligned_cols=34 Identities=3% Similarity=-0.131 Sum_probs=27.4
Q ss_pred ceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEee
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLP 249 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~ 249 (796)
.++|.|+||+||||+++.|++++... |..++..|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~-------g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQK-------GYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT-------TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEe
Confidence 47899999999999999999987532 45677766
No 287
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.63 E-value=0.037 Score=54.70 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=23.4
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
.+..++|+|+||+||||+++.|+..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 56678899999999999999999876
No 288
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.63 E-value=0.13 Score=51.65 Aligned_cols=28 Identities=7% Similarity=0.011 Sum_probs=22.9
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFER 233 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~ 233 (796)
....++|+|+||+|||+++..++..+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~ 49 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK 49 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5566788999999999999888876653
No 289
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.63 E-value=0.031 Score=53.42 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=20.4
Q ss_pred CceEEEcCCcccHHHHHHHHHHH
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~r 230 (796)
..++|+|+||+||||+++.|+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~ 25 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHhh
Confidence 45789999999999999999973
No 290
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.58 E-value=0.038 Score=55.11 Aligned_cols=23 Identities=13% Similarity=0.351 Sum_probs=21.2
Q ss_pred ceEEEcCCcccHHHHHHHHHHHH
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri 231 (796)
+++|+|+||+||||+++.|+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999876
No 291
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.57 E-value=0.2 Score=49.55 Aligned_cols=26 Identities=8% Similarity=-0.031 Sum_probs=21.9
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
...-+.|+||+|+|||++++.|+..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44567789999999999999999754
No 292
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.55 E-value=0.14 Score=57.38 Aligned_cols=27 Identities=7% Similarity=0.017 Sum_probs=23.1
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHc
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFER 233 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~ 233 (796)
+..++++|++|+||||++..||..+..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345678899999999999999998864
No 293
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.54 E-value=0.04 Score=55.22 Aligned_cols=26 Identities=12% Similarity=0.100 Sum_probs=23.3
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
+...++|+|+||+||||+++.|++++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999999976
No 294
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=93.50 E-value=0.54 Score=46.49 Aligned_cols=26 Identities=4% Similarity=0.074 Sum_probs=19.6
Q ss_pred ccCceEEEcCCcccHHHH-HHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGV-IRGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTai-v~~la~ri 231 (796)
..+|+++.+|+|+|||.+ +-.+..++
T Consensus 50 ~~~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 50 EGHDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 367899999999999977 34444444
No 295
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.49 E-value=0.051 Score=52.05 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=22.0
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
...++|+|+||+|||++++.|+..+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 3467899999999999999999875
No 296
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.43 E-value=0.16 Score=58.15 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHh--h--ccCceEEEcCCcccHHHHHHHHHHHHH
Q 003769 193 SDDVMSVLNALI--N--KKRNTVIVGGNLAAIEGVIRGIIDQFE 232 (796)
Q Consensus 193 ~~ei~~vi~~L~--r--~k~n~vLvGepGvGKTaiv~~la~ri~ 232 (796)
-.||.+++.... + ...+++|+|.+|+|||||++.||+++.
T Consensus 377 rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 377 YPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 366666666655 3 446788999999999999999999986
No 297
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.41 E-value=0.041 Score=54.05 Aligned_cols=26 Identities=12% Similarity=0.229 Sum_probs=22.4
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
+...++|+|+||+||||+++.|+++.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 44568899999999999999999864
No 298
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.40 E-value=0.055 Score=52.97 Aligned_cols=25 Identities=12% Similarity=0.060 Sum_probs=22.1
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
...++|+|+||+||||+++.|++++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999864
No 299
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.29 E-value=0.25 Score=55.17 Aligned_cols=97 Identities=16% Similarity=0.153 Sum_probs=59.0
Q ss_pred CCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCC-CCccccccccccCCCCCCCCCCchhhHHHHHHhCCC
Q 003769 602 KEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSS-QSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPH 680 (796)
Q Consensus 602 ~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms-~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~ 680 (796)
++.+.+++.||+| .|||++.++|+.++-... ..++.+.-. ++...... ... ...-.|..+...|-.++|++|.
T Consensus 165 ~~ggii~I~GpnG--SGKTTlL~allg~l~~~~-g~I~~~ed~ie~~~~~~~--q~~-v~~~~g~~f~~~lr~~Lrq~pd 238 (418)
T 1p9r_A 165 RPHGIILVTGPTG--SGKSTTLYAGLQELNSSE-RNILTVEDPIEFDIDGIG--QTQ-VNPRVDMTFARGLRAILRQDPD 238 (418)
T ss_dssp SSSEEEEEECSTT--SCHHHHHHHHHHHHCCTT-SCEEEEESSCCSCCSSSE--EEE-CBGGGTBCHHHHHHHHGGGCCS
T ss_pred hcCCeEEEECCCC--CCHHHHHHHHHhhcCCCC-CEEEEecccchhccCCcc--eEE-EccccCcCHHHHHHHHhccCCC
Confidence 5778999999999 999999999999986544 455554322 22100000 000 0001233455678888999985
Q ss_pred EEEEEcccccCCCChHHHHHHHHHHHHcce
Q 003769 681 RVFFMEDLDDHKVDSCYCQKGLKQAIENGC 710 (796)
Q Consensus 681 ~Vvl~deieka~~~~~~v~~~l~q~~d~G~ 710 (796)
++++.||-.. ..+.. .+++...|.
T Consensus 239 -~i~vgEiRd~----et~~~-~l~a~~tGh 262 (418)
T 1p9r_A 239 -VVMVGEIRDL----ETAQI-AVQASLTGH 262 (418)
T ss_dssp -EEEESCCCSH----HHHHH-HHHHHHTTC
T ss_pred -eEEEcCcCCH----HHHHH-HHHHHHhCC
Confidence 6788888654 23333 334555664
No 300
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.23 E-value=0.044 Score=54.30 Aligned_cols=26 Identities=15% Similarity=0.317 Sum_probs=23.1
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
....++|+|+||+||||+++.|+.+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45678899999999999999999875
No 301
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.20 E-value=0.32 Score=56.21 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=29.5
Q ss_pred HHHHHHHHHHh--h--ccCceEEEcCCcccHHHHHHHHHHHHH
Q 003769 194 DDVMSVLNALI--N--KKRNTVIVGGNLAAIEGVIRGIIDQFE 232 (796)
Q Consensus 194 ~ei~~vi~~L~--r--~k~n~vLvGepGvGKTaiv~~la~ri~ 232 (796)
.++.+++..-. . +...++|+|++|+||||+++.|+..+.
T Consensus 352 peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 352 PEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp HHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 45555554432 2 455788999999999999999999885
No 302
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.18 E-value=0.31 Score=54.69 Aligned_cols=99 Identities=12% Similarity=0.104 Sum_probs=54.5
Q ss_pred CCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccc----cccccCCCCCCC---CCCchhhHHH--
Q 003769 603 EQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDC----RTKKRSRDVELG---CCSYIERLGL-- 673 (796)
Q Consensus 603 ~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~----~~~k~~~~~~~~---~~~~~~~L~e-- 673 (796)
+...++|.||+| +|||+++..||.++-... ....-++..-|..... ......+.+-+. +......+.+
T Consensus 96 ~~~vI~lvG~~G--sGKTTt~~kLA~~l~~~G-~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al 172 (433)
T 3kl4_A 96 LPFIIMLVGVQG--SGKTTTAGKLAYFYKKRG-YKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGV 172 (433)
T ss_dssp SSEEEEECCCTT--SCHHHHHHHHHHHHHHTT-CCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHH
T ss_pred CCeEEEEECCCC--CCHHHHHHHHHHHHHHcC-CeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHH
Confidence 468999999999 999999999998875443 3343344332321110 001111222111 1121222233
Q ss_pred -HHHhCCCEEEEEcccccCC--CChHHHHHHHHHH
Q 003769 674 -ALNENPHRVFFMEDLDDHK--VDSCYCQKGLKQA 705 (796)
Q Consensus 674 -avr~~P~~Vvl~deieka~--~~~~~v~~~l~q~ 705 (796)
.++.+-|.||++|..-... .++ ....-+.++
T Consensus 173 ~~a~~~~~DvvIIDTaGr~~~~~d~-~lm~el~~i 206 (433)
T 3kl4_A 173 DIFVKNKMDIIIVDTAGRHGYGEET-KLLEEMKEM 206 (433)
T ss_dssp HHTTTTTCSEEEEEECCCSSSCCTT-HHHHHHHHH
T ss_pred HHHHhcCCCEEEEECCCCccccCCH-HHHHHHHHH
Confidence 3344678999999987763 355 444444443
No 303
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.17 E-value=0.98 Score=45.49 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=18.8
Q ss_pred ccCceEEEcCCcccHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGII 228 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la 228 (796)
.+++++++|++|+|||+++..++
T Consensus 75 ~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 75 QNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCcHHhHHHHH
Confidence 47789999999999998666544
No 304
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.13 E-value=0.061 Score=55.91 Aligned_cols=25 Identities=16% Similarity=0.062 Sum_probs=23.6
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
+.+++|+|++|+||||+++.||.++
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 7899999999999999999999976
No 305
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.12 E-value=0.43 Score=53.45 Aligned_cols=38 Identities=3% Similarity=0.004 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHhh--ccCceEEEcCCcccHHHHHHHHHHHHHc
Q 003769 193 SDDVMSVLNALIN--KKRNTVIVGGNLAAIEGVIRGIIDQFER 233 (796)
Q Consensus 193 ~~ei~~vi~~L~r--~k~n~vLvGepGvGKTaiv~~la~ri~~ 233 (796)
-.++..++ .- ...-++|.|+||+|||+++..++..+..
T Consensus 190 ~~~LD~~~---gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 190 FTELDRMT---SGFQRSDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp CHHHHHHH---SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cHHHHhhc---CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34555544 33 5566778899999999999999998764
No 306
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=93.11 E-value=0.58 Score=46.86 Aligned_cols=21 Identities=0% Similarity=-0.175 Sum_probs=17.4
Q ss_pred ccCceEEEcCCcccHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRG 226 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~ 226 (796)
..+++++.+|+|+|||.+.-.
T Consensus 61 ~~~~~li~a~TGsGKT~~~~~ 81 (236)
T 2pl3_A 61 QGKDVLGAAKTGSGKTLAFLV 81 (236)
T ss_dssp TTCCEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEeCCCCcHHHHHHH
Confidence 468899999999999986443
No 307
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.05 E-value=0.073 Score=51.34 Aligned_cols=36 Identities=11% Similarity=-0.053 Sum_probs=28.7
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEee
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLP 249 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~ 249 (796)
...++|+|++|+||||+++.|+.++.. .|..++.+|
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~-------~g~~~i~~d 40 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC-------HGIPCYTLD 40 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH-------TTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh-------CCCcEEEEC
Confidence 456789999999999999999998743 245677676
No 308
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.02 E-value=0.041 Score=53.37 Aligned_cols=25 Identities=4% Similarity=0.028 Sum_probs=21.4
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~r 230 (796)
....++|+|+||+||||+++.|+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4456789999999999999999864
No 309
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.01 E-value=0.049 Score=53.08 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=21.3
Q ss_pred ceEEEcCCcccHHHHHHHHHHHH
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri 231 (796)
.++|+|+||+||||+++.|++++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 47899999999999999999986
No 310
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.99 E-value=0.078 Score=51.43 Aligned_cols=33 Identities=12% Similarity=0.015 Sum_probs=25.6
Q ss_pred eEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEee
Q 003769 210 TVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLP 249 (796)
Q Consensus 210 ~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~ 249 (796)
++|.|++|+||||+++.|++++... |..++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~-------g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKR-------GKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHC-------CC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEee
Confidence 6789999999999999999987543 45565543
No 311
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.96 E-value=0.049 Score=53.39 Aligned_cols=25 Identities=12% Similarity=-0.077 Sum_probs=22.3
Q ss_pred CceEEEcCCcccHHHHHHHHHHHHH
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQFE 232 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri~ 232 (796)
..++|.|+||+||||+++.|++++.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999999874
No 312
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.92 E-value=0.17 Score=54.14 Aligned_cols=26 Identities=15% Similarity=0.063 Sum_probs=22.4
Q ss_pred CceEEEcCCcccHHHHHHHHHHHHHc
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQFER 233 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri~~ 233 (796)
.-++++|++|+||||++..||..+..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 34668999999999999999998764
No 313
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.90 E-value=0.19 Score=53.31 Aligned_cols=27 Identities=11% Similarity=0.083 Sum_probs=23.7
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFE 232 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~ 232 (796)
.+..++|+|++|+||||++..||..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345678899999999999999999886
No 314
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=92.87 E-value=1.1 Score=45.12 Aligned_cols=28 Identities=11% Similarity=-0.119 Sum_probs=20.7
Q ss_pred ccCceEEEcCCcccHHHHHH-HHHHHHHc
Q 003769 206 KKRNTVIVGGNLAAIEGVIR-GIIDQFER 233 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~-~la~ri~~ 233 (796)
..+++++++|+|+|||.+.- .+..++..
T Consensus 65 ~g~~~l~~apTGsGKT~~~~l~~l~~l~~ 93 (242)
T 3fe2_A 65 SGLDMVGVAQTGSGKTLSYLLPAIVHINH 93 (242)
T ss_dssp HTCCEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEECCCcCHHHHHHHHHHHHHHHh
Confidence 46799999999999998744 34445543
No 315
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.83 E-value=0.12 Score=52.58 Aligned_cols=111 Identities=9% Similarity=0.068 Sum_probs=61.9
Q ss_pred CCeEE-EEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCC---CCccccccccccCCC-CCCCCCCchhhHHHHHHh
Q 003769 603 EQTWL-LFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSS---QSRQDDCRTKKRSRD-VELGCCSYIERLGLALNE 677 (796)
Q Consensus 603 ~~~~~-lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms---~~~~~~~~~~k~~~~-~~~~~~~~~~~L~eavr~ 677 (796)
..||+ ++.||-| .|||+.+..+|.-+-+.. ...+-+... .| .+.. +..+.+. ..-.+......+.+.+.
T Consensus 26 ~~G~l~vitG~Mg--sGKTT~lL~~a~r~~~~g-~kVli~k~~~d~R~-ge~~-i~s~~g~~~~a~~~~~~~~~~~~~~- 99 (214)
T 2j9r_A 26 QNGWIEVICGSMF--SGKSEELIRRVRRTQFAK-QHAIVFKPCIDNRY-SEED-VVSHNGLKVKAVPVSASKDIFKHIT- 99 (214)
T ss_dssp CSCEEEEEECSTT--SCHHHHHHHHHHHHHHTT-CCEEEEECC-------------------CCEEECSSGGGGGGGCC-
T ss_pred CCCEEEEEECCCC--CcHHHHHHHHHHHHHHCC-CEEEEEEeccCCcc-hHHH-HHhhcCCeeEEeecCCHHHHHHHHh-
Confidence 34665 4799999 999998888886654444 334334322 12 1222 2222221 10001111123444333
Q ss_pred CCCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCC
Q 003769 678 NPHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLK 722 (796)
Q Consensus 678 ~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~ 722 (796)
++|.||++||+--- ++ +....+.++.+.|.-.=..|...||+
T Consensus 100 ~~~dvViIDEaQF~--~~-~~V~~l~~l~~~~~~Vi~~Gl~~DF~ 141 (214)
T 2j9r_A 100 EEMDVIAIDEVQFF--DG-DIVEVVQVLANRGYRVIVAGLDQDFR 141 (214)
T ss_dssp SSCCEEEECCGGGS--CT-THHHHHHHHHHTTCEEEEEECSBCTT
T ss_pred cCCCEEEEECcccC--CH-HHHHHHHHHhhCCCEEEEEecccccc
Confidence 47999999999998 88 66677777777776555567666666
No 316
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.81 E-value=0.039 Score=53.03 Aligned_cols=25 Identities=8% Similarity=-0.064 Sum_probs=18.1
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
...++|.|.||+||||+++.|+.++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4568899999999999999999875
No 317
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.76 E-value=0.12 Score=55.86 Aligned_cols=92 Identities=11% Similarity=0.167 Sum_probs=57.4
Q ss_pred CeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCC-CCccccccccccCCC-CCCCCCCchhhHHHHHHhCCCE
Q 003769 604 QTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSS-QSRQDDCRTKKRSRD-VELGCCSYIERLGLALNENPHR 681 (796)
Q Consensus 604 ~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms-~~~~~~~~~~k~~~~-~~~~~~~~~~~L~eavr~~P~~ 681 (796)
-..++++||+| .|||+|.+.|+.++--+ ...|.++-. ++....+. +..+. .+ .|...-..|..+++.+|.
T Consensus 171 g~~v~i~G~~G--sGKTTll~~l~g~~~~~--~g~i~i~~~~e~~~~~~~--~~i~~~~g-gg~~~r~~la~aL~~~p~- 242 (330)
T 2pt7_A 171 GKNVIVCGGTG--SGKTTYIKSIMEFIPKE--ERIISIEDTEEIVFKHHK--NYTQLFFG-GNITSADCLKSCLRMRPD- 242 (330)
T ss_dssp TCCEEEEESTT--SCHHHHHHHGGGGSCTT--SCEEEEESSCCCCCSSCS--SEEEEECB-TTBCHHHHHHHHTTSCCS-
T ss_pred CCEEEEECCCC--CCHHHHHHHHhCCCcCC--CcEEEECCeeccccccch--hEEEEEeC-CChhHHHHHHHHhhhCCC-
Confidence 34788999999 99999999999988543 456777643 22111010 00010 00 122333578889998885
Q ss_pred EEEEcccccCCCChHHHHHHHHHHHHcc
Q 003769 682 VFFMEDLDDHKVDSCYCQKGLKQAIENG 709 (796)
Q Consensus 682 Vvl~deieka~~~~~~v~~~l~q~~d~G 709 (796)
++++||.--+ ++++.| +.+..|
T Consensus 243 ilildE~~~~-----e~~~~l-~~~~~g 264 (330)
T 2pt7_A 243 RIILGELRSS-----EAYDFY-NVLCSG 264 (330)
T ss_dssp EEEECCCCST-----HHHHHH-HHHHTT
T ss_pred EEEEcCCChH-----HHHHHH-HHHhcC
Confidence 7789998754 666644 455444
No 318
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=92.68 E-value=0.55 Score=53.86 Aligned_cols=106 Identities=14% Similarity=0.140 Sum_probs=61.7
Q ss_pred CCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHH----HHcCCCCCceEEecCCCCc---cccc--c
Q 003769 582 PWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAK----VVFGSHSNNFTNLSSSQSR---QDDC--R 652 (796)
Q Consensus 582 ~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~----~~fg~~~~~~i~~dms~~~---~~~~--~ 652 (796)
+|-++.+..|.+.+... ......++...|+.| +|||+||+.++. .+-+.. +..+-++.++.. .... .
T Consensus 131 ~GR~~~~~~l~~~L~~~-~~~~~~vv~I~G~gG--vGKTtLA~~v~~~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM-CDLDSFFLFLHGRAG--SGKSVIASQALSKSDQLIGINY-DSIVWLKDSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCCHHHHHHHHHHHHHH-TTSSSEEEEEECSTT--SSHHHHHHHHHHHCSSTBTTTB-SEEEEEECCCCSTTHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc-cCCCceEEEEEcCCC--CCHHHHHHHHHHhhhHHHhccC-CcEEEEEECCCCCCCHHHHHHH
Confidence 58888888888777432 133457889999999 999999999996 232222 334556776531 1110 0
Q ss_pred ccccCCCC----CC--CCCC----chhhHHHHHHhCCCEEEEEcccccC
Q 003769 653 TKKRSRDV----EL--GCCS----YIERLGLALNENPHRVFFMEDLDDH 691 (796)
Q Consensus 653 ~~k~~~~~----~~--~~~~----~~~~L~eavr~~P~~Vvl~deieka 691 (796)
+....+.. .. .... ....|.+.++.++.-+|+||+++..
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~ 255 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE 255 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc
Confidence 00001110 00 0011 1245556666655778999999987
No 319
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.67 E-value=0.069 Score=53.82 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=21.1
Q ss_pred ceEEEcCCcccHHHHHHHHHHHH
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri 231 (796)
.++|+|+||+||||+++.|+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 320
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.67 E-value=0.096 Score=53.02 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=21.4
Q ss_pred ccCceEEEcCCcccHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ 229 (796)
...+++|+|++|||||+++..|..
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHcC
Confidence 567899999999999999998875
No 321
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=92.67 E-value=0.17 Score=49.52 Aligned_cols=41 Identities=17% Similarity=0.037 Sum_probs=28.8
Q ss_pred CCCChHHHHHHHHHHhhccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 189 LGRDSDDVMSVLNALINKKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 189 ldpr~~ei~~vi~~L~r~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
+.||+-....+-.++ ..+++++.+|+|+|||.++-.++...
T Consensus 32 ~~l~~~Q~~~i~~~~--~~~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 32 LQLRPYQMEVAQPAL--EGKNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCCCHHHHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHh--cCCCEEEEcCCCCCHHHHHHHHHHHH
Confidence 344555554444444 35789999999999999988777654
No 322
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.66 E-value=0.061 Score=52.99 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=24.1
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFER 233 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~ 233 (796)
++..++|+|+||+||||+++.|++++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3456889999999999999999998753
No 323
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.60 E-value=0.32 Score=52.25 Aligned_cols=74 Identities=9% Similarity=0.157 Sum_probs=46.3
Q ss_pred HHHHHHHHHhhcCCCCCCcch---HHHHHHHHHHH----hh-----c-----cCCCeEEEEecCCCCCchHHHHHHHHHH
Q 003769 566 ENLKVLSDALERKAVVPWQKE---IMPEIARTILE----CR-----S-----KKEQTWLLFLGADDHNHGKEKIAREIAK 628 (796)
Q Consensus 566 e~L~~l~~~L~~~~~v~gQ~~---av~~ia~~i~~----~r-----s-----~~~~~~~lf~Gp~g~~vGKt~lAk~LA~ 628 (796)
+-.+.|++.++++ +.+++- +...+.+.+.. .. . .++...++|.||.| +|||+++..||.
T Consensus 52 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G--~GKTT~~~~LA~ 127 (320)
T 1zu4_A 52 KMVLKVSNLVRKK--TKRDTSFENIKDALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNG--TGKTTSLAKMAN 127 (320)
T ss_dssp HHHHHHHHHHHHH--CCTTCCHHHHHHHHHHHHHHHHHCSCC----CCCCCCTTSCEEEEEESSTT--SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HhhchhHHHHHHHHHHHHHHHhCcccccccccCccccCCCCeEEEEECCCC--CCHHHHHHHHHH
Confidence 3455677788888 777532 22222222221 12 1 24457899999999 999999999998
Q ss_pred HHcCCCCCceEEecCC
Q 003769 629 VVFGSHSNNFTNLSSS 644 (796)
Q Consensus 629 ~~fg~~~~~~i~~dms 644 (796)
.+-... ....-+|..
T Consensus 128 ~l~~~g-~kVllid~D 142 (320)
T 1zu4_A 128 YYAELG-YKVLIAAAD 142 (320)
T ss_dssp HHHHTT-CCEEEEECC
T ss_pred HHHHCC-CeEEEEeCC
Confidence 875443 445555554
No 324
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=92.60 E-value=1 Score=52.21 Aligned_cols=42 Identities=10% Similarity=0.059 Sum_probs=34.0
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecc
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLF 251 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~ 251 (796)
..+.++.|.+|+|||.++..++..+....-|+ ..+|+-+|..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~---ev~lilIDpK 255 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPS---EARLIMIDPK 255 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTT---TEEEEEECSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCc---ceEEEEeCCC
Confidence 47899999999999999999998887655454 3578888854
No 325
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.60 E-value=0.19 Score=57.14 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=32.2
Q ss_pred HHHHHHhh--ccCceEEEcCCcccHHHHHHHHHHHHHcC
Q 003769 198 SVLNALIN--KKRNTVIVGGNLAAIEGVIRGIIDQFERG 234 (796)
Q Consensus 198 ~vi~~L~r--~k~n~vLvGepGvGKTaiv~~la~ri~~~ 234 (796)
++|+.|.- +...+.|+|++|||||+++..++..+.+.
T Consensus 154 rvID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~~ 192 (498)
T 1fx0_B 154 KVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKA 192 (498)
T ss_dssp TTHHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTTT
T ss_pred eEeeeecccccCCeEEeecCCCCCchHHHHHHHHHHHhh
Confidence 57888887 88889999999999999999999987643
No 326
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.59 E-value=0.071 Score=52.93 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=21.9
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHc
Q 003769 606 WLLFLGADDHNHGKEKIAREIAKVVF 631 (796)
Q Consensus 606 ~~lf~Gp~g~~vGKt~lAk~LA~~~f 631 (796)
.+.|+||.| +|||++.+.||.++-
T Consensus 3 ~i~i~G~nG--~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPG--VGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCS--SCHHHHHHHHHHHHH
T ss_pred EEEEECCCC--ChHHHHHHHHHhhcc
Confidence 467999999 999999999999985
No 327
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.58 E-value=0.064 Score=52.81 Aligned_cols=26 Identities=8% Similarity=0.083 Sum_probs=23.1
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFE 232 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~ 232 (796)
+..++|.|+||+||||+++.|++++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999875
No 328
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.57 E-value=0.32 Score=52.53 Aligned_cols=85 Identities=9% Similarity=-0.027 Sum_probs=49.7
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCC--CCceEEEeecccccc---------c------------------
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDL--RYAQFISLPLFSFRN---------Q------------------ 256 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L--~~~~v~~l~~~~l~a---------~------------------ 256 (796)
...-++|+|+||+|||+++..++..... |... .+..++.++...... .
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~---~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQL---PGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTS---CBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhc---ccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 5566778999999999999999986432 2110 234666666543100 0
Q ss_pred chHHHHHHHHHHHHHHHhccCCCEEEEEcchhhhhhh
Q 003769 257 SKGEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 257 ~rge~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~ 293 (796)
...++.+.+..+...+++...+.-+|+||.+..+...
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 0112222333344444431023579999999998854
No 329
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=92.47 E-value=1.9 Score=41.77 Aligned_cols=20 Identities=15% Similarity=0.104 Sum_probs=16.8
Q ss_pred ccCceEEEcCCcccHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIR 225 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~ 225 (796)
..+|+++.+|+|+|||.+.-
T Consensus 39 ~~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 39 SGRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp TTCCEEEECCSSSTTHHHHH
T ss_pred cCCCEEEECCCCCchHHHHH
Confidence 46889999999999996544
No 330
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.27 E-value=0.073 Score=54.30 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=23.1
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
+...++|+|+||+||||+++.|++++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 44678899999999999999999876
No 331
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.21 E-value=0.22 Score=46.13 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=20.1
Q ss_pred ceEEEcCCcccHHHHHHHHHHHH
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri 231 (796)
+++++|++|||||+++..+...-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999987653
No 332
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.12 E-value=0.17 Score=59.46 Aligned_cols=37 Identities=11% Similarity=-0.109 Sum_probs=29.5
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeec
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPL 250 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~ 250 (796)
+..++|+|.||+||||+++.|++++... |..++.+|.
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~-------G~~~v~lDg 88 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCH-------GIPCYTLDG 88 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEESH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhc-------CCeEEEech
Confidence 3457899999999999999999987542 456777764
No 333
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.01 E-value=0.22 Score=47.83 Aligned_cols=25 Identities=12% Similarity=0.230 Sum_probs=21.8
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~r 230 (796)
...+++++|++|||||+++..+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999988753
No 334
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.97 E-value=0.59 Score=46.72 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=20.9
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~r 230 (796)
...-+++.|+||+|||+++-.+|..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4566778899999999999988765
No 335
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.94 E-value=0.09 Score=51.64 Aligned_cols=30 Identities=10% Similarity=-0.007 Sum_probs=24.9
Q ss_pred ceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEee
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLP 249 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~ 249 (796)
.+.|+|++|+||||+++.|+. + |..++..|
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~----------g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L----------GAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T----------TCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-C----------CCEEEEcc
Confidence 578999999999999999997 4 46676665
No 336
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=91.89 E-value=0.68 Score=47.62 Aligned_cols=26 Identities=4% Similarity=-0.087 Sum_probs=19.3
Q ss_pred cCceEEEcCCcccHHHHHHH-HHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRG-IIDQFE 232 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~-la~ri~ 232 (796)
.+|+++.+|+|+|||.+.-. +.+++.
T Consensus 91 ~~~~lv~a~TGsGKT~~~~l~~l~~l~ 117 (262)
T 3ly5_A 91 GRDLLAAAKTGSGKTLAFLIPAVELIV 117 (262)
T ss_dssp TCCCEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEccCCCCchHHHHHHHHHHHH
Confidence 57899999999999987543 333444
No 337
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=91.69 E-value=0.22 Score=53.76 Aligned_cols=71 Identities=10% Similarity=0.310 Sum_probs=45.5
Q ss_pred eEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccccccCCCCCCCCCCchhhHHHHHHhCCCEEEE
Q 003769 605 TWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRTKKRSRDVELGCCSYIERLGLALNENPHRVFF 684 (796)
Q Consensus 605 ~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vvl 684 (796)
...++.||+| +|||.||.++|.. -|.. -.|+.+++.+. .... . .........+.+.+.+.+ +|+
T Consensus 124 sviLI~GpPG--sGKTtLAlqlA~~-~G~~-VlyIs~~~eE~----v~~~-----~-~~le~~l~~i~~~l~~~~--LLV 187 (331)
T 2vhj_A 124 GMVIVTGKGN--SGKTPLVHALGEA-LGGK-DKYATVRFGEP----LSGY-----N-TDFNVFVDDIARAMLQHR--VIV 187 (331)
T ss_dssp EEEEEECSCS--SSHHHHHHHHHHH-HHTT-SCCEEEEBSCS----STTC-----B-CCHHHHHHHHHHHHHHCS--EEE
T ss_pred cEEEEEcCCC--CCHHHHHHHHHHh-CCCC-EEEEEecchhh----hhhh-----h-cCHHHHHHHHHHHHhhCC--EEE
Confidence 3468999999 9999999999987 3433 45677643322 0000 0 000112245677788877 999
Q ss_pred EcccccC
Q 003769 685 MEDLDDH 691 (796)
Q Consensus 685 ~deieka 691 (796)
||+|.-.
T Consensus 188 IDsI~aL 194 (331)
T 2vhj_A 188 IDSLKNV 194 (331)
T ss_dssp EECCTTT
T ss_pred Eeccccc
Confidence 9999854
No 338
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.67 E-value=0.22 Score=49.13 Aligned_cols=41 Identities=7% Similarity=0.019 Sum_probs=29.4
Q ss_pred ChHHHHHHHHHHhh----ccCceEEEcCCcccHHHHHHHHHHHHH
Q 003769 192 DSDDVMSVLNALIN----KKRNTVIVGGNLAAIEGVIRGIIDQFE 232 (796)
Q Consensus 192 r~~ei~~vi~~L~r----~k~n~vLvGepGvGKTaiv~~la~ri~ 232 (796)
|++-+..+++-+.. .+.-+.|+|++|+||||+++.|+..+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34555666665543 223466889999999999999998774
No 339
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.66 E-value=0.13 Score=52.83 Aligned_cols=38 Identities=3% Similarity=-0.145 Sum_probs=29.5
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeec
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPL 250 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~ 250 (796)
.+-|+++.|+||||||+++-.+|.++... |++++..++
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l~~~-------G~~V~v~d~ 42 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQLRQ-------GVRVMAGVV 42 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHHHHT-------TCCEEEEEC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHC-------CCCEEEEEe
Confidence 45689999999999999999999887643 455554444
No 340
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.64 E-value=0.4 Score=53.59 Aligned_cols=28 Identities=7% Similarity=-0.062 Sum_probs=23.8
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFER 233 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~ 233 (796)
...-++|.|+||+|||+++-.+|..+..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4556677899999999999999998874
No 341
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.61 E-value=0.13 Score=57.27 Aligned_cols=26 Identities=19% Similarity=0.013 Sum_probs=22.0
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
.+.-++|+|+||+||||+++.|+.+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 45567789999999999999998754
No 342
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.59 E-value=0.43 Score=51.96 Aligned_cols=94 Identities=10% Similarity=0.130 Sum_probs=58.7
Q ss_pred CCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecC-CCCccccccccccCC----CCCC----CCCCchhhHHH
Q 003769 603 EQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSS-SQSRQDDCRTKKRSR----DVEL----GCCSYIERLGL 673 (796)
Q Consensus 603 ~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dm-s~~~~~~~~~~k~~~----~~~~----~~~~~~~~L~e 673 (796)
+-..++++||+| .|||+|.+.|+.++-. . ...|.++- .++....+. ...+ .... .+.+..+.|..
T Consensus 174 ~G~~i~ivG~sG--sGKSTll~~l~~~~~~-~-~g~I~ie~~~e~~~~~~~--~~v~~v~~q~~~~~~~~~~t~~~~i~~ 247 (361)
T 2gza_A 174 LERVIVVAGETG--SGKTTLMKALMQEIPF-D-QRLITIEDVPELFLPDHP--NHVHLFYPSEAKEEENAPVTAATLLRS 247 (361)
T ss_dssp TTCCEEEEESSS--SCHHHHHHHHHTTSCT-T-SCEEEEESSSCCCCTTCS--SEEEEECC----------CCHHHHHHH
T ss_pred cCCEEEEECCCC--CCHHHHHHHHHhcCCC-C-ceEEEECCccccCccccC--CEEEEeecCccccccccccCHHHHHHH
Confidence 445788999999 9999999999998743 3 55777763 232111110 0001 0001 12233367778
Q ss_pred HHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcc
Q 003769 674 ALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENG 709 (796)
Q Consensus 674 avr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G 709 (796)
+++.+|. +++++|+..+ .+.. +++.+.+|
T Consensus 248 ~l~~~pd-~~l~~e~r~~-----~~~~-~l~~l~~g 276 (361)
T 2gza_A 248 CLRMKPT-RILLAELRGG-----EAYD-FINVAASG 276 (361)
T ss_dssp HTTSCCS-EEEESCCCST-----HHHH-HHHHHHTT
T ss_pred HHhcCCC-EEEEcCchHH-----HHHH-HHHHHhcC
Confidence 8888886 6778998877 5666 56777777
No 343
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.58 E-value=0.68 Score=49.13 Aligned_cols=25 Identities=8% Similarity=0.070 Sum_probs=21.8
Q ss_pred ceEEEcCCcccHHHHHHHHHHHHHc
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQFER 233 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri~~ 233 (796)
.++++|++|+|||+++..||..+..
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4567899999999999999988764
No 344
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=91.54 E-value=1.6 Score=43.33 Aligned_cols=20 Identities=5% Similarity=-0.086 Sum_probs=17.0
Q ss_pred ccCceEEEcCCcccHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIR 225 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~ 225 (796)
..+|+++.+|+|+|||.+.-
T Consensus 56 ~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 56 QGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp TTCCEEEECCTTSCHHHHHH
T ss_pred CCCCEEEECCCCChHHHHHH
Confidence 46799999999999997644
No 345
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.52 E-value=0.34 Score=46.18 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=20.5
Q ss_pred cCceEEEcCCcccHHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~r 230 (796)
.-.++|+|+||||||+++..++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346889999999999999998753
No 346
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=91.51 E-value=0.33 Score=48.63 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=19.9
Q ss_pred eEEEcCCcccHH-HHHHHHHHHHHcC
Q 003769 210 TVIVGGNLAAIE-GVIRGIIDQFERG 234 (796)
Q Consensus 210 ~vLvGepGvGKT-aiv~~la~ri~~~ 234 (796)
.+++|+.|+||| .+.+.+-+...++
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~ 48 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQ 48 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 456899999999 8888887776654
No 347
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.50 E-value=0.1 Score=52.02 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=21.5
Q ss_pred CceEEEcCCcccHHHHHHHHHHHH
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri 231 (796)
..+.|+|+||+||||+++.|+..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999865
No 348
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=91.47 E-value=2.3 Score=45.08 Aligned_cols=38 Identities=11% Similarity=0.015 Sum_probs=24.9
Q ss_pred CChHHHHHHHHHHhh-ccCceEEEcCCcccHHHHHHHHHH
Q 003769 191 RDSDDVMSVLNALIN-KKRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 191 pr~~ei~~vi~~L~r-~k~n~vLvGepGvGKTaiv~~la~ 229 (796)
|+.-.... +..+.. .++|+++.+|+|+|||.++-..+.
T Consensus 28 ~~~~Q~~~-i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~ 66 (395)
T 3pey_A 28 PSKIQERA-LPLLLHNPPRNMIAQSQSGTGKTAAFSLTML 66 (395)
T ss_dssp CCHHHHHH-HHHHHCSSCCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCHHHHHH-HHHHHcCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 34444333 344444 558999999999999987654443
No 349
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=91.46 E-value=0.14 Score=56.13 Aligned_cols=27 Identities=7% Similarity=0.137 Sum_probs=23.5
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFE 232 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~ 232 (796)
...+++|+|+||+|||++++.|+..+.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 345789999999999999999998764
No 350
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=91.41 E-value=0.1 Score=51.21 Aligned_cols=23 Identities=13% Similarity=0.362 Sum_probs=20.8
Q ss_pred ceEEEcCCcccHHHHHHHHHHHH
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri 231 (796)
++.|+||+|+||||+++.|+..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999875
No 351
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.40 E-value=0.12 Score=50.56 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=21.0
Q ss_pred ceEEEcCCcccHHHHHHHHHHHH
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri 231 (796)
.+.|.|++|+|||++++.|+.++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 57789999999999999999876
No 352
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.34 E-value=0.78 Score=51.36 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=31.3
Q ss_pred CCCeEEEEecCCCCCchHHHHHHHHHHHHcCC-CCCceEEecCCCC
Q 003769 602 KEQTWLLFLGADDHNHGKEKIAREIAKVVFGS-HSNNFTNLSSSQS 646 (796)
Q Consensus 602 ~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~-~~~~~i~~dms~~ 646 (796)
++...++|.|+.| +|||+++-.||..+-.. . ....-+|+.-+
T Consensus 98 ~~~~vI~ivG~~G--vGKTT~a~~LA~~l~~~~G-~kVllvd~D~~ 140 (433)
T 2xxa_A 98 QPPAVVLMAGLQG--AGKTTSVGKLGKFLREKHK-KKVLVVSADVY 140 (433)
T ss_dssp SSSEEEEEECSTT--SSHHHHHHHHHHHHHHTSC-CCEEEEECCCS
T ss_pred CCCeEEEEECCCC--CCHHHHHHHHHHHHHHhcC-CeEEEEecCCC
Confidence 4567899999999 99999999999888533 2 34555565533
No 353
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=91.32 E-value=0.27 Score=50.22 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=21.1
Q ss_pred ccCceEEEcCCcccHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ 229 (796)
...+++|+|.||+|||+++..|..
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999998874
No 354
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.28 E-value=0.12 Score=49.77 Aligned_cols=24 Identities=8% Similarity=0.151 Sum_probs=21.0
Q ss_pred ccCceEEEcCCcccHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ 229 (796)
...+++++|++|||||+++..+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 445889999999999999998875
No 355
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.27 E-value=0.56 Score=52.01 Aligned_cols=83 Identities=7% Similarity=-0.023 Sum_probs=49.3
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCC--CCceEEEeecccccc--------------------------cc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDL--RYAQFISLPLFSFRN--------------------------QS 257 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L--~~~~v~~l~~~~l~a--------------------------~~ 257 (796)
...-++|+||||+|||+++..++.... .|... .+..++.++...... .+
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~---~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQ---IPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTT---SCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhc---cCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 566777899999999999998875432 23211 234566666432100 00
Q ss_pred -hHHHHHHHHHHHHHHHhccCCCEEEEEcchhhhhhh
Q 003769 258 -KGEVEQKLVELSCHVKSYMGRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 258 -rge~E~rl~~l~~~v~~~~~~~~ILfIDElh~l~~~ 293 (796)
..+..+.+..+.+.+.. ..+-+|+||++-.+...
T Consensus 254 ~~~~~~~~l~~~~~~l~~--~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSE--SRFSLIVVDSVMALYRT 288 (400)
T ss_dssp SHHHHHHHHHHHHHHHHH--SCEEEEEEETGGGGCC-
T ss_pred ChHHHHHHHHHHHHHHHh--cCCceEEecchhhhCch
Confidence 11223344444555554 46789999999888754
No 356
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.26 E-value=0.096 Score=51.05 Aligned_cols=25 Identities=12% Similarity=-0.142 Sum_probs=21.6
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~r 230 (796)
++..+.|+|++|+|||++++.|+.+
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4456789999999999999999974
No 357
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.21 E-value=0.1 Score=50.73 Aligned_cols=21 Identities=10% Similarity=0.041 Sum_probs=19.2
Q ss_pred ceEEEcCCcccHHHHHHHHHH
Q 003769 209 NTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ 229 (796)
.++|+|+||+||||+++.|+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 467899999999999999986
No 358
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.18 E-value=0.25 Score=48.71 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=22.4
Q ss_pred CeEEEEecCCCCCchHHHHHHHHHHHHc
Q 003769 604 QTWLLFLGADDHNHGKEKIAREIAKVVF 631 (796)
Q Consensus 604 ~~~~lf~Gp~g~~vGKt~lAk~LA~~~f 631 (796)
-..+++.||+| .|||.+++.||..+-
T Consensus 23 G~~~~i~G~~G--sGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 23 GFFIALTGEPG--TGKTIFSLHFIAKGL 48 (235)
T ss_dssp TCEEEEECSTT--SSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCC--CCHHHHHHHHHHHHH
Confidence 35788999999 999999999996654
No 359
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.15 E-value=0.19 Score=49.61 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=23.5
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
...+++++|.+|+|||+++..|+...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 66789999999999999999999875
No 360
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.13 E-value=0.12 Score=51.12 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=21.4
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
++-++|+||+|+||||+++.|+...
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4567899999999999999998865
No 361
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=91.12 E-value=0.96 Score=47.58 Aligned_cols=26 Identities=8% Similarity=-0.065 Sum_probs=20.3
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
.++++++.+|+|+|||.++-..+...
T Consensus 43 ~~~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 43 DEYNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp TCSEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCChHHHHHHHHHHHH
Confidence 45789999999999998866555443
No 362
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.97 E-value=0.15 Score=48.95 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=26.4
Q ss_pred HHHHHHHHhh-ccCceEEEcCCcccHHHHHHHHHH
Q 003769 196 VMSVLNALIN-KKRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 196 i~~vi~~L~r-~k~n~vLvGepGvGKTaiv~~la~ 229 (796)
+.++.+ |.+ +.-+++++|++|||||+++..+..
T Consensus 5 ~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 5 FTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp HHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred HHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 345556 545 778999999999999999998873
No 363
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=90.86 E-value=0.28 Score=48.30 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=21.4
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~r 230 (796)
...+++|+|.+|+|||+++..|...
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4567899999999999999988764
No 364
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=90.85 E-value=0.89 Score=53.60 Aligned_cols=23 Identities=9% Similarity=-0.012 Sum_probs=19.4
Q ss_pred ccCceEEEcCCcccHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGII 228 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la 228 (796)
..+|++++||+|+|||.++...+
T Consensus 39 ~~~~~lv~apTGsGKT~~~~l~i 61 (702)
T 2p6r_A 39 SGKNLLLAMPTAAGKTLLAEMAM 61 (702)
T ss_dssp TCSCEEEECSSHHHHHHHHHHHH
T ss_pred CCCcEEEEcCCccHHHHHHHHHH
Confidence 47899999999999999985443
No 365
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=90.85 E-value=0.11 Score=50.65 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=0.0
Q ss_pred eEEEcCCcccHHHHHHHHHH
Q 003769 210 TVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 210 ~vLvGepGvGKTaiv~~la~ 229 (796)
+.|+||+|+||||+++.|+.
T Consensus 10 i~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 10 FIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
No 366
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.82 E-value=0.49 Score=50.25 Aligned_cols=26 Identities=8% Similarity=-0.033 Sum_probs=22.3
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
....++|+|+||+|||+++..++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 55677889999999999999999763
No 367
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=90.82 E-value=3.1 Score=40.97 Aligned_cols=21 Identities=5% Similarity=-0.227 Sum_probs=17.3
Q ss_pred ccCceEEEcCCcccHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRG 226 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~ 226 (796)
..+++++.+|+|+|||.+.-.
T Consensus 40 ~~~~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 40 RGESMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp HTCCEEEECCSSHHHHHHHHH
T ss_pred CCCCEEEECCCCChHHHHHHH
Confidence 367899999999999987443
No 368
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.82 E-value=0.12 Score=50.54 Aligned_cols=25 Identities=16% Similarity=0.054 Sum_probs=21.7
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
...++|+|++|+||||+++.|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4567899999999999999998764
No 369
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.80 E-value=1.3 Score=50.47 Aligned_cols=33 Identities=21% Similarity=0.468 Sum_probs=27.2
Q ss_pred HHHHHHhh--ccCceEEEcCCcccHHHH-HHHHHHH
Q 003769 198 SVLNALIN--KKRNTVIVGGNLAAIEGV-IRGIIDQ 230 (796)
Q Consensus 198 ~vi~~L~r--~k~n~vLvGepGvGKTai-v~~la~r 230 (796)
++|+.|.- +.....|+|++|||||++ ...+++.
T Consensus 151 raID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~ 186 (502)
T 2qe7_A 151 KAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQ 186 (502)
T ss_dssp HHHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGG
T ss_pred eecccccccccCCEEEEECCCCCCchHHHHHHHHHh
Confidence 57888887 888899999999999999 4566654
No 370
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=90.80 E-value=0.44 Score=54.93 Aligned_cols=52 Identities=10% Similarity=-0.031 Sum_probs=35.9
Q ss_pred HHHHHHHHHHh--h--ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeeccc
Q 003769 194 DDVMSVLNALI--N--KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFS 252 (796)
Q Consensus 194 ~ei~~vi~~L~--r--~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~ 252 (796)
.||.+++.... + ....++|+|.||+|||++++.|++++... |.+++.+|...
T Consensus 355 ~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~-------G~~~~~ld~D~ 410 (546)
T 2gks_A 355 PEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQAR-------GRKVTLLDGDV 410 (546)
T ss_dssp HHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEECHHH
T ss_pred hhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhc-------CCeEEEECchH
Confidence 45555555544 2 24567789999999999999999987532 35566666433
No 371
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=90.77 E-value=1.8 Score=49.54 Aligned_cols=42 Identities=14% Similarity=0.142 Sum_probs=31.6
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeec
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPL 250 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~ 250 (796)
+..++++.|.+|+|||++++.+...+...--|+ ..+|+-+|.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~---~v~l~liDp 207 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLYKAQPE---DVRFIMIDP 207 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTT---TEEEEEECC
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHhCCCc---eEEEEEECC
Confidence 457999999999999999999987665443343 346776664
No 372
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=90.76 E-value=0.25 Score=51.14 Aligned_cols=23 Identities=4% Similarity=0.261 Sum_probs=20.4
Q ss_pred CceEEEcCCcccHHHHHHHHHHH
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~r 230 (796)
++++|+|.||||||+++..|...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 47899999999999999999754
No 373
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=90.76 E-value=0.55 Score=50.88 Aligned_cols=85 Identities=9% Similarity=-0.026 Sum_probs=49.7
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCC--CCCCceEEEeeccccc--------------------------cc-
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPG--DLRYAQFISLPLFSFR--------------------------NQ- 256 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~--~L~~~~v~~l~~~~l~--------------------------a~- 256 (796)
...-+.|+||||+|||+++..++..+... |. .+.+ +++.++..... ..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~--~~~Gg~~G-~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~ 206 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLP--PEEGGLNG-SVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAF 206 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSC--GGGTSCSC-EEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccc--hhcCCCCC-eEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecC
Confidence 55566789999999999999999865210 10 1122 44445432210 00
Q ss_pred chHHHHHHHHHHHHHHHhcc---CCCEEEEEcchhhhhhh
Q 003769 257 SKGEVEQKLVELSCHVKSYM---GRGIVLYLGDLKWVAEF 293 (796)
Q Consensus 257 ~rge~E~rl~~l~~~v~~~~---~~~~ILfIDElh~l~~~ 293 (796)
..+..++.+..+...+++.+ .++-+|+|||+-.++..
T Consensus 207 ~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~ 246 (349)
T 1pzn_A 207 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRS 246 (349)
T ss_dssp SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhh
Confidence 12334445555545554310 24789999999998865
No 374
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.75 E-value=0.15 Score=50.66 Aligned_cols=32 Identities=9% Similarity=0.046 Sum_probs=26.2
Q ss_pred CceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEee
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLP 249 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~ 249 (796)
-.+.|+|.+|+||||+++.|++++ |..++..|
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l----------g~~vid~D 44 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY----------GAHVVNVD 44 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH----------CCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc----------CCEEEECc
Confidence 356789999999999999999864 46677666
No 375
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=90.69 E-value=0.12 Score=50.45 Aligned_cols=24 Identities=13% Similarity=0.286 Sum_probs=20.9
Q ss_pred ceEEEcCCcccHHHHHHHHHHHHH
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQFE 232 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri~ 232 (796)
-++|+||+|+||||+++.|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 467899999999999999998653
No 376
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.63 E-value=0.17 Score=48.67 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=21.9
Q ss_pred eEEEEecCCCCCchHHHHHHHHHHHH
Q 003769 605 TWLLFLGADDHNHGKEKIAREIAKVV 630 (796)
Q Consensus 605 ~~~lf~Gp~g~~vGKt~lAk~LA~~~ 630 (796)
-.++|.||+| +|||++|+.||+.+
T Consensus 6 ~~i~l~G~~G--sGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMG--AGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTT--SSHHHHHHHHHHHH
T ss_pred CEEEEECCCC--CCHHHHHHHHHHHh
Confidence 3577999999 99999999999987
No 377
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.60 E-value=0.17 Score=50.19 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=22.0
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
+..++|+|++|+|||++++.|+.++
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468899999999999999999874
No 378
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.59 E-value=0.34 Score=55.35 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=23.3
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHc
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFER 233 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~ 233 (796)
.++++++|.|||||||++..||..+.+
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 457889999999999999999988764
No 379
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=90.58 E-value=1.2 Score=44.77 Aligned_cols=20 Identities=5% Similarity=-0.012 Sum_probs=16.8
Q ss_pred ccCceEEEcCCcccHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIR 225 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~ 225 (796)
..+|+++++|+|+|||.+.-
T Consensus 66 ~~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 66 KGYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp TTCCEEECCCSSHHHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHH
Confidence 36789999999999997743
No 380
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=90.56 E-value=0.19 Score=49.83 Aligned_cols=42 Identities=12% Similarity=0.211 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHc
Q 003769 586 EIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVF 631 (796)
Q Consensus 586 ~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~f 631 (796)
+.+..|++.|... .++.-.+.+.||+| .|||+|++.|+.++-
T Consensus 6 ~~~~~~~~~~~~~--~~~g~~v~I~G~sG--sGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 6 ALCQGVLERLDPR--QPGRQLVALSGAPG--SGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHHSCTT--CCSCEEEEEECCTT--SCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCCeEEEEECCCC--CCHHHHHHHHHHHHh
Confidence 3455555555433 34556788999999 999999999999986
No 381
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.49 E-value=0.18 Score=49.58 Aligned_cols=26 Identities=15% Similarity=0.330 Sum_probs=23.4
Q ss_pred CCeEEEEecCCCCCchHHHHHHHHHHHH
Q 003769 603 EQTWLLFLGADDHNHGKEKIAREIAKVV 630 (796)
Q Consensus 603 ~~~~~lf~Gp~g~~vGKt~lAk~LA~~~ 630 (796)
+...+++.||+| +|||++|+.||+.+
T Consensus 24 ~~~~i~l~G~~G--sGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMG--AGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTT--SCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCC--CCHHHHHHHHHHHc
Confidence 345788999999 99999999999988
No 382
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.48 E-value=0.23 Score=57.65 Aligned_cols=106 Identities=10% Similarity=0.126 Sum_probs=59.9
Q ss_pred CCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCc---c------cccc
Q 003769 582 PWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSR---Q------DDCR 652 (796)
Q Consensus 582 ~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~---~------~~~~ 652 (796)
.+|.+|+..+. ....+++.||.| +|||.++++|+..+-... ..++-.--+... . +..+
T Consensus 192 ~~Q~~Av~~~~----------~~~~~~I~G~pG--TGKTt~i~~l~~~l~~~g-~~Vl~~ApT~~Aa~~L~e~~~~~a~T 258 (574)
T 3e1s_A 192 EEQASVLDQLA----------GHRLVVLTGGPG--TGKSTTTKAVADLAESLG-LEVGLCAPTGKAARRLGEVTGRTAST 258 (574)
T ss_dssp HHHHHHHHHHT----------TCSEEEEECCTT--SCHHHHHHHHHHHHHHTT-CCEEEEESSHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHH----------hCCEEEEEcCCC--CCHHHHHHHHHHHHHhcC-CeEEEecCcHHHHHHhHhhhcccHHH
Confidence 45777766554 125889999999 999999999998875443 333322111000 0 0001
Q ss_pred ccccCCCCCCCCCCchhhHHHHHHhCCCEEEEEcccccCCCChHHHHHHHHHHHHcc
Q 003769 653 TKKRSRDVELGCCSYIERLGLALNENPHRVFFMEDLDDHKVDSCYCQKGLKQAIENG 709 (796)
Q Consensus 653 ~~k~~~~~~~~~~~~~~~L~eavr~~P~~Vvl~deieka~~~~~~v~~~l~q~~d~G 709 (796)
+-++.+..+ . ++. ...-+..++.||++||+-.. +. ..+..|++++..|
T Consensus 259 ih~ll~~~~-~--~~~---~~~~~~~~~dvlIIDEasml--~~-~~~~~Ll~~~~~~ 306 (574)
T 3e1s_A 259 VHRLLGYGP-Q--GFR---HNHLEPAPYDLLIVDEVSMM--GD-ALMLSLLAAVPPG 306 (574)
T ss_dssp HHHHTTEET-T--EES---CSSSSCCSCSEEEECCGGGC--CH-HHHHHHHTTSCTT
T ss_pred HHHHHcCCc-c--hhh---hhhcccccCCEEEEcCccCC--CH-HHHHHHHHhCcCC
Confidence 111111000 0 000 00012237899999999999 99 8888887777543
No 383
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.47 E-value=0.65 Score=49.27 Aligned_cols=85 Identities=12% Similarity=0.082 Sum_probs=48.4
Q ss_pred CeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCCccccccc----cccCCC---CCCCCCCchh---hHHH
Q 003769 604 QTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQSRQDDCRT----KKRSRD---VELGCCSYIE---RLGL 673 (796)
Q Consensus 604 ~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~~~~~~~~----~k~~~~---~~~~~~~~~~---~L~e 673 (796)
..+++|.||.| +|||+++..||..+-... ....-+|..-+....+.. .+..+- ++..+..... .+.+
T Consensus 98 ~~vi~i~G~~G--~GKTT~~~~la~~~~~~g-~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQG--TGKTTTAGKLAYFYKKKG-FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSC--SSTTHHHHHHHHHHHHTT-CCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCC--CCHHHHHHHHHHHHHHCC-CeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 56888999999 999999999998885333 345555554332111100 011111 1111112122 3444
Q ss_pred HHHhCCCEEEEEcccccC
Q 003769 674 ALNENPHRVFFMEDLDDH 691 (796)
Q Consensus 674 avr~~P~~Vvl~deieka 691 (796)
.++.+.|.+|++|=-=..
T Consensus 175 ~~~~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTAGRH 192 (297)
T ss_dssp HHHHTTCSEEEEECCCSC
T ss_pred HHHhCCCCEEEEeCCCCc
Confidence 555588999999975444
No 384
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=90.37 E-value=4.2 Score=41.29 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=20.2
Q ss_pred ccCceEEEcCCcccHHHHHH-HHHHHHHc
Q 003769 206 KKRNTVIVGGNLAAIEGVIR-GIIDQFER 233 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~-~la~ri~~ 233 (796)
..+++++.+|+|+|||.+.- .+..++..
T Consensus 79 ~~~~~lv~a~TGsGKT~~~~~~il~~l~~ 107 (249)
T 3ber_A 79 QGRDIIGLAETGSGKTGAFALPILNALLE 107 (249)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEcCCCCCchhHhHHHHHHHHhc
Confidence 46889999999999998744 33334443
No 385
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.33 E-value=1.4 Score=49.68 Aligned_cols=35 Identities=11% Similarity=0.060 Sum_probs=29.5
Q ss_pred HHHHHHhh--ccCceEEEcCCcccHHHHHHHHHHHHH
Q 003769 198 SVLNALIN--KKRNTVIVGGNLAAIEGVIRGIIDQFE 232 (796)
Q Consensus 198 ~vi~~L~r--~k~n~vLvGepGvGKTaiv~~la~ri~ 232 (796)
++|+.|.- +.....|+|++|+|||++...+|....
T Consensus 141 r~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~ 177 (469)
T 2c61_A 141 STIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQAS 177 (469)
T ss_dssp HHHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCB
T ss_pred EeeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 57888877 778888899999999999998887653
No 386
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=90.27 E-value=0.98 Score=55.38 Aligned_cols=81 Identities=14% Similarity=0.112 Sum_probs=45.1
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHH---cC-CCCCCCC-----CceEEEeecccccccchHHHHHHHHHHHHHHHhccC
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFE---RG-QVPGDLR-----YAQFISLPLFSFRNQSKGEVEQKLVELSCHVKSYMG 277 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~---~~-~vp~~L~-----~~~v~~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~ 277 (796)
..-++|+||.|+||||+.+.++.-.. .| -||..-. ..-+-.+.+..-.......|...+.++...++.. .
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a-~ 740 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSA-T 740 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHHHC-C
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhc-c
Confidence 45577899999999999998854221 23 3552100 0001111111112233344666677777777654 6
Q ss_pred CCEEEEEcchh
Q 003769 278 RGIVLYLGDLK 288 (796)
Q Consensus 278 ~~~ILfIDElh 288 (796)
.+-+|++||.-
T Consensus 741 ~~sLlLLDEp~ 751 (934)
T 3thx_A 741 KDSLIIIDELG 751 (934)
T ss_dssp TTCEEEEESCS
T ss_pred CCcEEEEeCCC
Confidence 78899999984
No 387
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.26 E-value=0.14 Score=49.81 Aligned_cols=24 Identities=13% Similarity=0.176 Sum_probs=20.1
Q ss_pred ccCceEEEcCCcccHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ 229 (796)
+..+++++|+||||||+++..+..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 566899999999999999998875
No 388
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.08 E-value=1.2 Score=47.94 Aligned_cols=34 Identities=12% Similarity=0.127 Sum_probs=25.5
Q ss_pred HHHHHhh---ccCceEEEcCCcccHHHHHHHHHHHHH
Q 003769 199 VLNALIN---KKRNTVIVGGNLAAIEGVIRGIIDQFE 232 (796)
Q Consensus 199 vi~~L~r---~k~n~vLvGepGvGKTaiv~~la~ri~ 232 (796)
+++-+.. ....+.|+|+||+||||+.+.|+..+.
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 4444443 444567899999999999999997664
No 389
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=89.99 E-value=0.28 Score=55.20 Aligned_cols=28 Identities=11% Similarity=-0.013 Sum_probs=24.7
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHc
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFER 233 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~ 233 (796)
.+..++|+|.||+|||++++.|+.++..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 5668899999999999999999998753
No 390
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.95 E-value=0.28 Score=48.63 Aligned_cols=39 Identities=15% Similarity=0.131 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhh--ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 193 SDDVMSVLNALIN--KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 193 ~~ei~~vi~~L~r--~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
.++...-+.-+.. ....++++|.+|||||+++..++...
T Consensus 22 ~~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 22 NKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
No 391
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=89.94 E-value=0.19 Score=49.82 Aligned_cols=26 Identities=4% Similarity=0.078 Sum_probs=22.1
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFE 232 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~ 232 (796)
+.-+.|+|++|+||||+++.|+..+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34566899999999999999998775
No 392
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.93 E-value=0.11 Score=51.18 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=21.2
Q ss_pred eEEEcCCcccHHHHHHHHHHHHH
Q 003769 210 TVIVGGNLAAIEGVIRGIIDQFE 232 (796)
Q Consensus 210 ~vLvGepGvGKTaiv~~la~ri~ 232 (796)
++|+|++|+||||+++.|+.++.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999875
No 393
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.85 E-value=0.15 Score=55.43 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=28.1
Q ss_pred eEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCC
Q 003769 605 TWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSS 644 (796)
Q Consensus 605 ~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms 644 (796)
..+++.|||| +|||+||++||+.+ +.+ +|..|--
T Consensus 41 ~lIvI~GPTg--sGKTtLa~~LA~~l-~~e---iIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATG--TGKSRLSIDLAAHF-PLE---VINSDKM 74 (339)
T ss_dssp EEEEEECSTT--SSHHHHHHHHHTTS-CEE---EEECCSS
T ss_pred ceEEEECCCC--CCHHHHHHHHHHHC-CCc---EEccccc
Confidence 4788999999 99999999999986 444 7777654
No 394
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=89.83 E-value=0.32 Score=50.17 Aligned_cols=24 Identities=8% Similarity=0.248 Sum_probs=21.1
Q ss_pred ccCceEEEcCCcccHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ 229 (796)
+.-+++|+|.+|+|||+++..+..
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999998875
No 395
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=89.79 E-value=8.1 Score=37.75 Aligned_cols=24 Identities=8% Similarity=-0.165 Sum_probs=19.2
Q ss_pred cCceEEEcCCcccHHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~r 230 (796)
.+++++.+|+|+|||.+.-..+..
T Consensus 51 ~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 51 GMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEECCCCCchhhhhhHHHHH
Confidence 578999999999999876655543
No 396
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.72 E-value=0.15 Score=47.02 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.1
Q ss_pred CceEEEcCCcccHHHHHHHHHHH
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~r 230 (796)
.+++++|++|+|||+++..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999988753
No 397
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=89.71 E-value=0.23 Score=51.18 Aligned_cols=32 Identities=28% Similarity=0.341 Sum_probs=25.7
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecC
Q 003769 606 WLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSS 643 (796)
Q Consensus 606 ~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dm 643 (796)
.+++.||+| .|||++|++||+.+ |.. ++..|-
T Consensus 3 li~I~G~~G--SGKSTla~~La~~~-~~~---~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTC--SGKTDMAIQIAQET-GWP---VVALDR 34 (253)
T ss_dssp EEEEECCTT--SSHHHHHHHHHHHH-CCC---EEECCS
T ss_pred EEEEECCCC--cCHHHHHHHHHhcC-CCe---EEeccH
Confidence 468999999 99999999999986 433 666554
No 398
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.64 E-value=0.23 Score=50.33 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=22.8
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
.+..+.|+|++|+|||++++.|+.++
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45568899999999999999999875
No 399
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=89.63 E-value=0.2 Score=51.25 Aligned_cols=47 Identities=21% Similarity=0.223 Sum_probs=29.8
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccc
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRN 255 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a 255 (796)
+..+.|.|+||+|||++++.|+.++...-+. ..+..++.++...+..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d--~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVD--YRQKQVVILSQDSFYR 68 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSC--GGGCSEEEEEGGGGBC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhccc--ccCCceEEEecCcccc
Confidence 3457789999999999999999875311000 1123455566555543
No 400
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=89.51 E-value=0.97 Score=51.52 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=25.4
Q ss_pred CCCeEEEEecCCCCCchHHHHHHHHHHHHcC
Q 003769 602 KEQTWLLFLGADDHNHGKEKIAREIAKVVFG 632 (796)
Q Consensus 602 ~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg 632 (796)
++...++|+||+| +|||+|++.||.++-.
T Consensus 291 ~~GeVI~LVGpNG--SGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 291 KAPFVILMVGVNG--VGKTTTIGKLARQFEQ 319 (503)
T ss_dssp CTTEEEEEECCTT--SSHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCc--ccHHHHHHHHHHHhhh
Confidence 4557899999999 9999999999998753
No 401
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.49 E-value=0.14 Score=50.09 Aligned_cols=33 Identities=24% Similarity=0.149 Sum_probs=25.1
Q ss_pred HHHHHHHHhh--ccCceEEEcCCcccHHHHHHHHH
Q 003769 196 VMSVLNALIN--KKRNTVIVGGNLAAIEGVIRGII 228 (796)
Q Consensus 196 i~~vi~~L~r--~k~n~vLvGepGvGKTaiv~~la 228 (796)
+..+++-+.- +...++++|++|||||+++..+.
T Consensus 12 ~~~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 12 FSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp -CHHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHS
T ss_pred HHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHh
Confidence 3455666643 56679999999999999999775
No 402
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.41 E-value=0.24 Score=52.98 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=24.9
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCC
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQ 235 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~ 235 (796)
.+..+.|+||+|+|||++++.|+.-+ .|.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~ 153 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL-GGS 153 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH-TCE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc-Cce
Confidence 56677799999999999999999876 664
No 403
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.39 E-value=0.17 Score=47.48 Aligned_cols=23 Identities=9% Similarity=0.021 Sum_probs=19.7
Q ss_pred cCceEEEcCCcccHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ 229 (796)
.-+++++|+||||||+++..+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 34789999999999999988764
No 404
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=89.37 E-value=1.3 Score=49.59 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=30.8
Q ss_pred CCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCC
Q 003769 603 EQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSS 644 (796)
Q Consensus 603 ~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms 644 (796)
+..+++|.||.| +|||+++..||.++-... ....-+|..
T Consensus 97 ~~~vi~i~G~~G--sGKTT~~~~LA~~l~~~g-~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQG--SGKTTTAAKLALYYKGKG-RRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTT--SSHHHHHHHHHHHHHTTT-CCEEEEECC
T ss_pred CCeEEEEECCCC--CCHHHHHHHHHHHHHHcC-CeEEEeecc
Confidence 456888999999 999999999999986544 455556654
No 405
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.34 E-value=0.2 Score=49.74 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=19.8
Q ss_pred CceEEEcCCcccHHHHHHHHHH
Q 003769 208 RNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ 229 (796)
..++|+|++|+||||+++.|+.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999986
No 406
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=89.33 E-value=0.19 Score=51.77 Aligned_cols=26 Identities=8% Similarity=0.069 Sum_probs=22.7
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
.+..+.|+|++|+||||+++.|++++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 44568899999999999999999875
No 407
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=89.20 E-value=1.5 Score=45.60 Aligned_cols=24 Identities=13% Similarity=-0.018 Sum_probs=19.0
Q ss_pred ccCceEEEcCCcccHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ 229 (796)
..+++++++|+|+|||.++-..+.
T Consensus 30 ~~~~~lv~~~TGsGKT~~~~~~~~ 53 (337)
T 2z0m_A 30 QGKNVVVRAKTGSGKTAAYAIPIL 53 (337)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCEEEEcCCCCcHHHHHHHHHH
Confidence 367899999999999987655443
No 408
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.18 E-value=0.34 Score=53.37 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhh---ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 194 DDVMSVLNALIN---KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 194 ~ei~~vi~~L~r---~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
+-...+++-+.. .++.++|+||||+|||++++.|+...
T Consensus 153 ~~~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 153 SVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 334556666643 55677899999999999999999753
No 409
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=89.17 E-value=0.23 Score=50.96 Aligned_cols=24 Identities=21% Similarity=0.273 Sum_probs=21.1
Q ss_pred ccCceEEEcCCcccHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ 229 (796)
..-+++|+|.||||||+++..|..
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCcHHHHHHHHhC
Confidence 456899999999999999998864
No 410
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=89.13 E-value=0.19 Score=46.36 Aligned_cols=23 Identities=9% Similarity=0.190 Sum_probs=19.9
Q ss_pred cCceEEEcCCcccHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ 229 (796)
+-+++++|++|+|||+++..+..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 34789999999999999988875
No 411
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.09 E-value=0.18 Score=52.67 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=20.6
Q ss_pred CceEEEcCCcccHHHHHHHHHHH
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~r 230 (796)
..++|+|+||+||||+++.|+++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999985
No 412
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=89.05 E-value=0.49 Score=46.62 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCC
Q 003769 586 EIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSS 644 (796)
Q Consensus 586 ~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms 644 (796)
+.+..|++.|... ..++...+.+.||.| .|||++++.|+..+-... -.++.+++.
T Consensus 5 ~~~~~l~~~~~~~-~~~~~~~i~i~G~~G--sGKstl~~~l~~~~~~~~-~~v~~~~~d 59 (201)
T 1rz3_A 5 DRIDFLCKTILAI-KTAGRLVLGIDGLSR--SGKTTLANQLSQTLREQG-ISVCVFHMD 59 (201)
T ss_dssp HHHHHHHHHHHTS-CCSSSEEEEEEECTT--SSHHHHHHHHHHHHHHTT-CCEEEEEGG
T ss_pred HHHHHHHHHHHHh-ccCCCeEEEEECCCC--CCHHHHHHHHHHHHhhcC-CeEEEeccC
Confidence 3566677776643 233456888999999 999999999999883222 235555554
No 413
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=89.05 E-value=0.22 Score=46.95 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=21.3
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHH
Q 003769 606 WLLFLGADDHNHGKEKIAREIAKVV 630 (796)
Q Consensus 606 ~~lf~Gp~g~~vGKt~lAk~LA~~~ 630 (796)
.+++.||+| +|||++|+.||+.+
T Consensus 3 ~i~l~G~~G--sGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDC--CFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSS--SSHHHHHHHHHHHH
T ss_pred EEEEECCCC--CCHHHHHHHHHHHh
Confidence 468999999 99999999999986
No 414
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=89.02 E-value=6.2 Score=42.18 Aligned_cols=23 Identities=9% Similarity=-0.145 Sum_probs=18.6
Q ss_pred cCceEEEcCCcccHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ 229 (796)
.+++++.+|+|+|||.++-..+.
T Consensus 58 ~~~~li~a~TGsGKT~~~~~~~~ 80 (400)
T 1s2m_A 58 GRDILARAKNGTGKTAAFVIPTL 80 (400)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEECCCCcHHHHHHHHHHH
Confidence 57899999999999987655444
No 415
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=89.01 E-value=0.18 Score=49.53 Aligned_cols=21 Identities=14% Similarity=0.071 Sum_probs=19.1
Q ss_pred ceEEEcCCcccHHHHHHHHHH
Q 003769 209 NTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ 229 (796)
.+.|+|++|+||||+++.|+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577999999999999999986
No 416
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.98 E-value=0.4 Score=49.23 Aligned_cols=83 Identities=11% Similarity=0.047 Sum_probs=46.7
Q ss_pred CCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCCCC-cccccc-ccccCCCC----CCCCCCch-hhHHHHH
Q 003769 603 EQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSSQS-RQDDCR-TKKRSRDV----ELGCCSYI-ERLGLAL 675 (796)
Q Consensus 603 ~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms~~-~~~~~~-~~k~~~~~----~~~~~~~~-~~L~eav 675 (796)
..--++|.|+.| ||||++|-.+|..+-..- ...+-+|+... +.+... ...+...| .+.|.... ..|..++
T Consensus 5 g~l~I~~~~kgG--vGKTt~a~~la~~l~~~G-~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L 81 (228)
T 2r8r_A 5 GRLKVFLGAAPG--VGKTYAMLQAAHAQLRQG-VRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALL 81 (228)
T ss_dssp CCEEEEEESSTT--SSHHHHHHHHHHHHHHTT-CCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHH
T ss_pred ceEEEEEECCCC--CcHHHHHHHHHHHHHHCC-CCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHH
Confidence 345688999999 999999999998875433 34555565421 111100 11111111 12222222 3555556
Q ss_pred HhCCCEEEEEcccc
Q 003769 676 NENPHRVFFMEDLD 689 (796)
Q Consensus 676 r~~P~~Vvl~deie 689 (796)
.++ +.+|++||+=
T Consensus 82 ~~~-pdlvIVDElG 94 (228)
T 2r8r_A 82 KAA-PSLVLVDELA 94 (228)
T ss_dssp HHC-CSEEEESCTT
T ss_pred hcC-CCEEEEeCCC
Confidence 655 5899999865
No 417
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=88.98 E-value=2.7 Score=41.89 Aligned_cols=26 Identities=8% Similarity=0.014 Sum_probs=19.4
Q ss_pred ccCceEEEcCCcccHHHHH-HHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVI-RGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv-~~la~ri 231 (796)
..+|+++.+|+|+|||.+. -.+..++
T Consensus 60 ~~~~~l~~a~TGsGKT~~~~l~~l~~l 86 (230)
T 2oxc_A 60 CGLDLIVQAKSGTGKTCVFSTIALDSL 86 (230)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 4678999999999999774 3344444
No 418
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.98 E-value=0.2 Score=46.56 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=20.7
Q ss_pred cCceEEEcCCcccHHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~r 230 (796)
.-+++++|++|||||+++..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 457899999999999999988763
No 419
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.97 E-value=0.22 Score=51.24 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=22.5
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
++..+.|.|+||+|||++++.|+.++
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45568899999999999999999876
No 420
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.96 E-value=0.2 Score=46.14 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=20.1
Q ss_pred CceEEEcCCcccHHHHHHHHHHH
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~r 230 (796)
-+++++|++|+|||+++..+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999988753
No 421
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=88.93 E-value=0.55 Score=54.51 Aligned_cols=39 Identities=8% Similarity=-0.042 Sum_probs=29.8
Q ss_pred CceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCC-ceEEEeecccc
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRY-AQFISLPLFSF 253 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~-~~v~~l~~~~l 253 (796)
..++|.|.||+||||+++.|++++... | ..++.+|...+
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~-------G~~~~~~lD~D~i 436 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQ-------GGRSVSLLLGDTV 436 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHH-------CSSCEEEEEHHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhccc-------CCceEEEECcHHH
Confidence 467789999999999999999987531 2 55677765443
No 422
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.93 E-value=0.17 Score=47.70 Aligned_cols=22 Identities=5% Similarity=0.190 Sum_probs=19.5
Q ss_pred CceEEEcCCcccHHHHHHHHHH
Q 003769 208 RNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ 229 (796)
..++|+|+||||||+++..++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999999999998874
No 423
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=88.88 E-value=0.23 Score=48.93 Aligned_cols=24 Identities=8% Similarity=-0.011 Sum_probs=20.4
Q ss_pred cCceEEEcCCcccHHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~r 230 (796)
+..+.|+|+||+||||+++.|+..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 345678999999999999999864
No 424
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.75 E-value=0.21 Score=46.17 Aligned_cols=23 Identities=9% Similarity=0.135 Sum_probs=20.3
Q ss_pred cCceEEEcCCcccHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ 229 (796)
.-+++++|++|+|||+++..+..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHh
Confidence 45789999999999999998875
No 425
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=88.67 E-value=0.3 Score=46.79 Aligned_cols=36 Identities=11% Similarity=0.114 Sum_probs=27.8
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCC
Q 003769 606 WLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSS 644 (796)
Q Consensus 606 ~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms 644 (796)
.++|.||+| +|||++|+.|++.+-... -.+..++++
T Consensus 3 ~I~i~G~~G--sGKsT~~~~L~~~l~~~g-~~~~~~~~~ 38 (194)
T 1nks_A 3 IGIVTGIPG--VGKSTVLAKVKEILDNQG-INNKIINYG 38 (194)
T ss_dssp EEEEEECTT--SCHHHHHHHHHHHHHTTT-CCEEEEEHH
T ss_pred EEEEECCCC--CCHHHHHHHHHHHHHhcC-ceEEEEECC
Confidence 478999999 999999999999874332 346666654
No 426
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.65 E-value=0.18 Score=48.08 Aligned_cols=23 Identities=4% Similarity=0.183 Sum_probs=20.5
Q ss_pred cCceEEEcCCcccHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ 229 (796)
+.+++|+|++|||||+++..++.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45789999999999999999875
No 427
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=88.64 E-value=1.2 Score=53.69 Aligned_cols=81 Identities=11% Similarity=0.101 Sum_probs=40.9
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHc---C-CCCCCCCCc----eEE-EeecccccccchHHHHHHHHHHHHHHHhccC
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFER---G-QVPGDLRYA----QFI-SLPLFSFRNQSKGEVEQKLVELSCHVKSYMG 277 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~---~-~vp~~L~~~----~v~-~l~~~~l~a~~rge~E~rl~~l~~~v~~~~~ 277 (796)
..-++|+||.|+||||+.+.++.-... | .||..-... +++ .+....-+......|...++++...+... .
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~~e~~~~~~il~~a-~ 685 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNA-T 685 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHC-C
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHHHHhhCCHHHHHHhhhhhhhHHHHHHHHHHHhc-c
Confidence 345778999999999999998875432 2 355321000 111 11111111111111222233444444433 5
Q ss_pred CCEEEEEcchh
Q 003769 278 RGIVLYLGDLK 288 (796)
Q Consensus 278 ~~~ILfIDElh 288 (796)
.+-+|++||.-
T Consensus 686 ~psLlLLDEp~ 696 (800)
T 1wb9_A 686 EYSLVLMDEIG 696 (800)
T ss_dssp TTEEEEEESCC
T ss_pred CCCEEEEECCC
Confidence 78999999983
No 428
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=88.63 E-value=0.25 Score=51.85 Aligned_cols=24 Identities=8% Similarity=-0.057 Sum_probs=20.7
Q ss_pred ccCceEEEcCCcccHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ 229 (796)
++..++|+|+||+||||+++.|+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999994
No 429
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=88.62 E-value=0.22 Score=46.34 Aligned_cols=24 Identities=4% Similarity=0.238 Sum_probs=20.8
Q ss_pred cCceEEEcCCcccHHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~r 230 (796)
.-+++++|++|+|||+++..+...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 457899999999999999988753
No 430
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.62 E-value=1.2 Score=51.01 Aligned_cols=95 Identities=16% Similarity=0.230 Sum_probs=59.0
Q ss_pred eEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCC-CCcc-ccccccccCCC-CCCCCCCchhhHHHHHHhCCCE
Q 003769 605 TWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSS-QSRQ-DDCRTKKRSRD-VELGCCSYIERLGLALNENPHR 681 (796)
Q Consensus 605 ~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms-~~~~-~~~~~~k~~~~-~~~~~~~~~~~L~eavr~~P~~ 681 (796)
..++++||+| .|||++.++|+.++-. . ...+.++-. ++.. +.+.+.-..+. .+..+.++...|-.++|.+|..
T Consensus 261 ~~i~I~GptG--SGKTTlL~aL~~~i~~-~-~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ 336 (511)
T 2oap_1 261 FSAIVVGETA--SGKTTTLNAIMMFIPP-D-AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDY 336 (511)
T ss_dssp CCEEEEESTT--SSHHHHHHHHGGGSCT-T-CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSE
T ss_pred CEEEEECCCC--CCHHHHHHHHHhhCCC-C-CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCe
Confidence 3589999999 9999999999998843 3 567777533 3321 11111000011 1111224446777889999976
Q ss_pred EEEEcccccCCCChHHHHHHHHHHHHcce
Q 003769 682 VFFMEDLDDHKVDSCYCQKGLKQAIENGC 710 (796)
Q Consensus 682 Vvl~deieka~~~~~~v~~~l~q~~d~G~ 710 (796)
+ ++.|+--. +.+ .++|++..|.
T Consensus 337 i-ivgEir~~-----E~~-~~l~a~~tGh 358 (511)
T 2oap_1 337 I-IVGEVRGR-----EAQ-TLFQAMSTGH 358 (511)
T ss_dssp E-EESCCCST-----HHH-HHHHHHHTTC
T ss_pred E-EeCCcCHH-----HHH-HHHHhhcCCC
Confidence 5 67988765 444 4677887774
No 431
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=88.61 E-value=0.22 Score=47.57 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=26.4
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCC
Q 003769 606 WLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSS 644 (796)
Q Consensus 606 ~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms 644 (796)
.+++.||+| .|||++|++||+.+ + ..++.+++.
T Consensus 5 ~i~l~G~~G--sGKST~a~~La~~l-~---~~~~~~~~D 37 (178)
T 1qhx_A 5 MIILNGGSS--AGKSGIVRCLQSVL-P---EPWLAFGVD 37 (178)
T ss_dssp EEEEECCTT--SSHHHHHHHHHHHS-S---SCEEEEEHH
T ss_pred EEEEECCCC--CCHHHHHHHHHHhc-C---CCeEEeccc
Confidence 578999999 99999999999987 3 236665543
No 432
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.53 E-value=0.76 Score=48.91 Aligned_cols=50 Identities=10% Similarity=0.004 Sum_probs=33.8
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeecccccccchHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPLFSFRNQSKGEVEQKLV 266 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~~~l~a~~rge~E~rl~ 266 (796)
...-++|.|+||+|||+++-.+|..+... +.+++.+++. +...++-.|+.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~-------g~~vl~~slE----~s~~~l~~R~~ 116 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDN-------DDVVNLHSLE----MGKKENIKRLI 116 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTT-------TCEEEEEESS----SCHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHc-------CCeEEEEECC----CCHHHHHHHHH
Confidence 45566778999999999999999887643 3455555543 33445555544
No 433
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.53 E-value=0.47 Score=47.51 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.0
Q ss_pred CCeEEEEecCCCCCchHHHHHHHHHH
Q 003769 603 EQTWLLFLGADDHNHGKEKIAREIAK 628 (796)
Q Consensus 603 ~~~~~lf~Gp~g~~vGKt~lAk~LA~ 628 (796)
+-..+.++||.| .|||+|++.|+.
T Consensus 29 ~G~~~~l~GpnG--sGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTG--TGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTT--SSHHHHHHHHHH
T ss_pred CCcEEEEEeCCC--CCHHHHHHHHHH
Confidence 345788999999 999999999994
No 434
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.53 E-value=0.22 Score=46.22 Aligned_cols=22 Identities=9% Similarity=0.246 Sum_probs=19.6
Q ss_pred CceEEEcCCcccHHHHHHHHHH
Q 003769 208 RNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ 229 (796)
-+++++|++|+|||+++..+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999998875
No 435
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.51 E-value=0.21 Score=50.38 Aligned_cols=34 Identities=9% Similarity=0.023 Sum_probs=27.2
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeec
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPL 250 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~ 250 (796)
..+.++|+||+|+|||+++..|+++. .++++-|.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g-----------~~iIsdDs 66 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG-----------HRLIADDR 66 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT-----------CEEEESSE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC-----------CeEEecch
Confidence 45668899999999999999998752 36777664
No 436
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.47 E-value=0.22 Score=48.27 Aligned_cols=31 Identities=6% Similarity=0.150 Sum_probs=21.7
Q ss_pred HHHHHhh-ccCceEEEcCCcccHHHHHHHHHH
Q 003769 199 VLNALIN-KKRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 199 vi~~L~r-~k~n~vLvGepGvGKTaiv~~la~ 229 (796)
.++.+.. ..-+++++|++|||||+++..+..
T Consensus 19 ~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 19 YFQSMAKSAEVKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp --------CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred chhccCCCCceEEEEECCCCCCHHHHHHHHHh
Confidence 3444555 667899999999999999998876
No 437
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.39 E-value=0.23 Score=46.70 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=21.0
Q ss_pred ccCceEEEcCCcccHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ 229 (796)
+..+++++|++|||||+++..+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 567899999999999999998864
No 438
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.38 E-value=0.22 Score=48.54 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=20.0
Q ss_pred CceEEEcCCcccHHHHHHHHHHH
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~r 230 (796)
-.++|+|++|||||++++.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35789999999999999988763
No 439
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.38 E-value=0.24 Score=53.16 Aligned_cols=34 Identities=21% Similarity=0.434 Sum_probs=27.9
Q ss_pred eEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCC
Q 003769 605 TWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSS 644 (796)
Q Consensus 605 ~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms 644 (796)
..+++.|||| +|||+||++||+.+ +.+ +|+.|--
T Consensus 11 ~~i~i~Gptg--sGKt~la~~La~~~-~~~---iis~Ds~ 44 (316)
T 3foz_A 11 KAIFLMGPTA--SGKTALAIELRKIL-PVE---LISVDSA 44 (316)
T ss_dssp EEEEEECCTT--SCHHHHHHHHHHHS-CEE---EEECCTT
T ss_pred cEEEEECCCc--cCHHHHHHHHHHhC-CCc---EEecccc
Confidence 4678999999 99999999999985 544 7777654
No 440
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=88.31 E-value=0.22 Score=46.49 Aligned_cols=20 Identities=10% Similarity=0.067 Sum_probs=18.3
Q ss_pred ceEEEcCCcccHHHHHHHHH
Q 003769 209 NTVIVGGNLAAIEGVIRGII 228 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la 228 (796)
+++++|+||||||+++..+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999885
No 441
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=88.29 E-value=0.38 Score=46.33 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=22.0
Q ss_pred eEEEEecCCCCCchHHHHHHHHHHHH
Q 003769 605 TWLLFLGADDHNHGKEKIAREIAKVV 630 (796)
Q Consensus 605 ~~~lf~Gp~g~~vGKt~lAk~LA~~~ 630 (796)
..++|.|++| .|||++|+.||+.+
T Consensus 6 ~~I~l~G~~G--sGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHPA--TGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTT--SSHHHHHHHHHHHH
T ss_pred eEEEEECCCC--CCHHHHHHHHHHHc
Confidence 4678999999 99999999999987
No 442
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=88.25 E-value=1.2 Score=50.88 Aligned_cols=39 Identities=18% Similarity=0.286 Sum_probs=27.9
Q ss_pred CCCeEEEEecCCCCCchHHHHHHHHHHHHc--CCCCCceEEecC
Q 003769 602 KEQTWLLFLGADDHNHGKEKIAREIAKVVF--GSHSNNFTNLSS 643 (796)
Q Consensus 602 ~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~f--g~~~~~~i~~dm 643 (796)
++...++|+|++| +|||+++..||..+- |.. -.++..|.
T Consensus 99 ~~~~vI~ivG~~G--vGKTTl~~kLA~~l~~~G~k-VllVd~D~ 139 (504)
T 2j37_W 99 GKQNVIMFVGLQG--SGKTTTCSKLAYYYQRKGWK-TCLICADT 139 (504)
T ss_dssp S--EEEEEECSTT--SSHHHHHHHHHHHHHHTTCC-EEEEEECC
T ss_pred CCCeEEEEECCCC--CCHHHHHHHHHHHHHhCCCe-EEEEeccc
Confidence 4457899999999 999999999998765 333 33455554
No 443
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=88.25 E-value=0.24 Score=46.62 Aligned_cols=24 Identities=4% Similarity=0.156 Sum_probs=20.8
Q ss_pred ccCceEEEcCCcccHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ 229 (796)
..-+++++|++|||||+++..+..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Confidence 345789999999999999998875
No 444
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.23 E-value=0.24 Score=48.69 Aligned_cols=25 Identities=8% Similarity=0.157 Sum_probs=21.8
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~r 230 (796)
...+++|+|++|+|||+++..|...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999988764
No 445
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=88.23 E-value=1.2 Score=50.65 Aligned_cols=33 Identities=21% Similarity=0.484 Sum_probs=27.4
Q ss_pred HHHHHHhh--ccCceEEEcCCcccHHHH-HHHHHHH
Q 003769 198 SVLNALIN--KKRNTVIVGGNLAAIEGV-IRGIIDQ 230 (796)
Q Consensus 198 ~vi~~L~r--~k~n~vLvGepGvGKTai-v~~la~r 230 (796)
++|+.|.- +.....|+|++|||||++ ...+++.
T Consensus 164 raID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~ 199 (515)
T 2r9v_A 164 KAIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQ 199 (515)
T ss_dssp HHHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTT
T ss_pred cccccccccccCCEEEEEcCCCCCccHHHHHHHHHh
Confidence 67888887 888999999999999999 4566553
No 446
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=88.19 E-value=0.24 Score=45.92 Aligned_cols=22 Identities=9% Similarity=0.175 Sum_probs=19.7
Q ss_pred CceEEEcCCcccHHHHHHHHHH
Q 003769 208 RNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ 229 (796)
-+++++|++|||||+++..+..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999998875
No 447
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=88.18 E-value=0.55 Score=55.06 Aligned_cols=41 Identities=27% Similarity=0.203 Sum_probs=27.3
Q ss_pred ChHHHHHHHHHHhhccCceEEEcCCcccHHHHHHHHHHHHHc
Q 003769 192 DSDDVMSVLNALINKKRNTVIVGGNLAAIEGVIRGIIDQFER 233 (796)
Q Consensus 192 r~~ei~~vi~~L~r~k~n~vLvGepGvGKTaiv~~la~ri~~ 233 (796)
-+.....|..+|. .+.=.++.||||||||+++-.++..+.+
T Consensus 191 N~~Q~~AV~~al~-~~~~~lI~GPPGTGKT~ti~~~I~~l~~ 231 (646)
T 4b3f_X 191 DTSQKEAVLFALS-QKELAIIHGPPGTGKTTTVVEIILQAVK 231 (646)
T ss_dssp CHHHHHHHHHHHH-CSSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc-CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 5666667777776 2334567799999999765555544443
No 448
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=88.18 E-value=0.26 Score=47.21 Aligned_cols=24 Identities=8% Similarity=0.058 Sum_probs=22.0
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHc
Q 003769 606 WLLFLGADDHNHGKEKIAREIAKVVF 631 (796)
Q Consensus 606 ~~lf~Gp~g~~vGKt~lAk~LA~~~f 631 (796)
.++|.||+| +|||++|+.||+.+-
T Consensus 5 ~I~i~G~~G--sGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPG--VGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTT--SCHHHHHHHHHHHHH
T ss_pred EEEEECCCC--CCHHHHHHHHHHHHH
Confidence 578999999 999999999999873
No 449
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=88.14 E-value=0.24 Score=46.06 Aligned_cols=22 Identities=5% Similarity=0.222 Sum_probs=19.5
Q ss_pred CceEEEcCCcccHHHHHHHHHH
Q 003769 208 RNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ 229 (796)
-+++++|++|+|||+++..+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4689999999999999998874
No 450
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.12 E-value=0.21 Score=46.39 Aligned_cols=21 Identities=10% Similarity=0.067 Sum_probs=18.4
Q ss_pred CceEEEcCCcccHHHHHHHHH
Q 003769 208 RNTVIVGGNLAAIEGVIRGII 228 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la 228 (796)
-+++++|+||||||+++..+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 368999999999999998775
No 451
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.09 E-value=0.19 Score=48.29 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=19.4
Q ss_pred CceEEEcCCcccHHHHHHHHHH
Q 003769 208 RNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ 229 (796)
-.++|+|+||||||+++..++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3588999999999999998875
No 452
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=88.08 E-value=0.54 Score=48.92 Aligned_cols=24 Identities=8% Similarity=0.134 Sum_probs=20.9
Q ss_pred cCceEEEcCCcccHHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~r 230 (796)
+-+++|+|.||||||+++..|...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999753
No 453
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=88.05 E-value=0.22 Score=48.35 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=26.6
Q ss_pred eEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCC
Q 003769 605 TWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSS 644 (796)
Q Consensus 605 ~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms 644 (796)
-.+++.|+.| +|||++|+.||+.++| +..+|+.
T Consensus 11 ~~I~l~G~~G--sGKSTv~~~La~~l~g-----~~~id~d 43 (184)
T 1y63_A 11 INILITGTPG--TGKTSMAEMIAAELDG-----FQHLEVG 43 (184)
T ss_dssp CEEEEECSTT--SSHHHHHHHHHHHSTT-----EEEEEHH
T ss_pred CEEEEECCCC--CCHHHHHHHHHHhcCC-----CEEeeHH
Confidence 4688999999 9999999999998655 3445554
No 454
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.03 E-value=0.25 Score=48.01 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=20.0
Q ss_pred CceEEEcCCcccHHHHHHHHHHH
Q 003769 208 RNTVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~r 230 (796)
-.++|+|++|||||++++.++..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46789999999999999988763
No 455
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=87.96 E-value=0.25 Score=45.96 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=20.1
Q ss_pred cCceEEEcCCcccHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ 229 (796)
.-+++++|++|||||+++..+..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 45789999999999999988875
No 456
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=87.94 E-value=1.3 Score=51.09 Aligned_cols=33 Identities=12% Similarity=0.096 Sum_probs=28.8
Q ss_pred HHHHHHhh--ccCceEEEcCCcccHHHHHHHHHHH
Q 003769 198 SVLNALIN--KKRNTVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 198 ~vi~~L~r--~k~n~vLvGepGvGKTaiv~~la~r 230 (796)
++|+.|.- +.....|+|++|||||++...+|+.
T Consensus 216 rvID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 250 (588)
T 3mfy_A 216 RVIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKW 250 (588)
T ss_dssp HHHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHH
T ss_pred chhhccCCcccCCeEEeecCCCCCHHHHHHHHHhc
Confidence 67888887 7888899999999999999888764
No 457
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=87.84 E-value=0.66 Score=49.06 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhc--cCCCeEEEEecCCCCCchHHHHHHHHHHHHc
Q 003769 587 IMPEIARTILECRS--KKEQTWLLFLGADDHNHGKEKIAREIAKVVF 631 (796)
Q Consensus 587 av~~ia~~i~~~rs--~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~f 631 (796)
.++.|++.|..... .++...+.+.||+| .|||++|+.|++.+-
T Consensus 12 ~~~~l~~~i~~~~~~~~~~~~ii~I~G~sG--sGKSTla~~L~~~l~ 56 (290)
T 1odf_A 12 TIEFLDKYIPEWFETGNKCPLFIFFSGPQG--SGKSFTSIQIYNHLM 56 (290)
T ss_dssp HHHHHHHHHHHHHTTTCCSCEEEEEECCTT--SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCCCeEEEEECCCC--CCHHHHHHHHHHHhh
Confidence 55666666665322 34456778999999 999999999999884
No 458
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=87.82 E-value=0.26 Score=48.86 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=0.0
Q ss_pred eEEEcCCcccHHHHHHHHHH
Q 003769 210 TVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 210 ~vLvGepGvGKTaiv~~la~ 229 (796)
+.|+||+|+||||+++.|+.
T Consensus 23 ~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
No 459
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.81 E-value=0.25 Score=45.93 Aligned_cols=22 Identities=5% Similarity=0.158 Sum_probs=19.4
Q ss_pred CceEEEcCCcccHHHHHHHHHH
Q 003769 208 RNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ 229 (796)
-+++++|++|||||+++..+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999988864
No 460
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=87.81 E-value=0.26 Score=49.89 Aligned_cols=26 Identities=8% Similarity=0.112 Sum_probs=22.1
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
...-++|+||+|+||||+++.|+..+
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34567799999999999999999865
No 461
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=87.80 E-value=0.35 Score=46.62 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=28.3
Q ss_pred CCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCC
Q 003769 603 EQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSS 644 (796)
Q Consensus 603 ~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms 644 (796)
+...+.+.||.| .|||++++.||.. ++. ..+.+|..
T Consensus 8 ~g~~i~l~G~~G--sGKSTl~~~La~~-~~~---g~i~i~~d 43 (191)
T 1zp6_A 8 GGNILLLSGHPG--SGKSTIAEALANL-PGV---PKVHFHSD 43 (191)
T ss_dssp TTEEEEEEECTT--SCHHHHHHHHHTC-SSS---CEEEECTT
T ss_pred CCeEEEEECCCC--CCHHHHHHHHHhc-cCC---CeEEEccc
Confidence 345788999999 9999999999987 443 36777754
No 462
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=87.79 E-value=0.38 Score=47.16 Aligned_cols=24 Identities=21% Similarity=0.445 Sum_probs=22.0
Q ss_pred eEEEEecCCCCCchHHHHHHHHHHHH
Q 003769 605 TWLLFLGADDHNHGKEKIAREIAKVV 630 (796)
Q Consensus 605 ~~~lf~Gp~g~~vGKt~lAk~LA~~~ 630 (796)
..+++.||+| .|||++|+.|++.+
T Consensus 19 ~~I~l~G~~G--sGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSG--SGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTT--SCHHHHHHHHHHHH
T ss_pred eEEEEECCCC--CCHHHHHHHHHHHh
Confidence 3578999999 99999999999987
No 463
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=87.79 E-value=0.26 Score=45.69 Aligned_cols=24 Identities=8% Similarity=0.195 Sum_probs=20.6
Q ss_pred ccCceEEEcCCcccHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ 229 (796)
..-+++++|++|||||+++..+..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 345789999999999999988875
No 464
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=87.78 E-value=0.29 Score=49.23 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=22.3
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
...-+.|+||+|+||||+++.|+...
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45567799999999999999999865
No 465
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=87.76 E-value=0.26 Score=46.86 Aligned_cols=23 Identities=13% Similarity=0.085 Sum_probs=20.3
Q ss_pred cCceEEEcCCcccHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ 229 (796)
.-+++|+|++|||||+++..+..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 45789999999999999998875
No 466
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=87.74 E-value=0.26 Score=46.29 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.6
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~r 230 (796)
+..+++++|++|||||+++..+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4458999999999999999988764
No 467
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=87.69 E-value=0.4 Score=49.19 Aligned_cols=36 Identities=22% Similarity=0.276 Sum_probs=27.7
Q ss_pred CCeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCC
Q 003769 603 EQTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSS 644 (796)
Q Consensus 603 ~~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms 644 (796)
+...++|.||+| .|||++|+.|++.+.+ . .+.+|..
T Consensus 31 ~~~~i~l~G~~G--sGKSTla~~L~~~l~~-~---~~~~~~D 66 (253)
T 2p5t_B 31 QPIAILLGGQSG--AGKTTIHRIKQKEFQG-N---IVIIDGD 66 (253)
T ss_dssp SCEEEEEESCGG--GTTHHHHHHHHHHTTT-C---CEEECGG
T ss_pred CCeEEEEECCCC--CCHHHHHHHHHHhcCC-C---cEEEecH
Confidence 346788999999 9999999999998742 2 3555554
No 468
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=87.67 E-value=0.28 Score=48.05 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=20.6
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~r 230 (796)
+..+++++|++|||||+++..+...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999988753
No 469
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=87.64 E-value=0.45 Score=46.69 Aligned_cols=29 Identities=14% Similarity=0.362 Sum_probs=25.3
Q ss_pred cCCCeEEEEecCCCCCchHHHHHHHHHHHHc
Q 003769 601 KKEQTWLLFLGADDHNHGKEKIAREIAKVVF 631 (796)
Q Consensus 601 ~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~~f 631 (796)
..+...+.+.||+| .|||++|+.||..+.
T Consensus 22 ~~~g~~i~l~G~sG--sGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSG--SGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTT--SSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCC--CCHHHHHHHHHHHHH
Confidence 34556788999999 999999999999997
No 470
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=87.56 E-value=0.27 Score=46.19 Aligned_cols=24 Identities=8% Similarity=0.234 Sum_probs=20.9
Q ss_pred ccCceEEEcCCcccHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ 229 (796)
..-+++++|++|+|||+++..+..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHh
Confidence 456789999999999999998875
No 471
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=87.53 E-value=0.25 Score=46.69 Aligned_cols=23 Identities=9% Similarity=0.192 Sum_probs=20.1
Q ss_pred cCceEEEcCCcccHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ 229 (796)
.-+++++|++|||||+++..+..
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45789999999999999998876
No 472
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=87.50 E-value=0.27 Score=55.14 Aligned_cols=37 Identities=5% Similarity=-0.024 Sum_probs=28.6
Q ss_pred cCceEEEcCCcccHHHHHHHHHHHHHcCCCCCCCCCceEEEeec
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISLPL 250 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ri~~~~vp~~L~~~~v~~l~~ 250 (796)
..+++++|+||||||+++..||..+.+. |.++.-++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~-------G~kVllv~~ 135 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKR-------GLKPALIAA 135 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHH-------HCCEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEec
Confidence 3578899999999999999999987642 445555554
No 473
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=87.46 E-value=0.79 Score=48.55 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=19.6
Q ss_pred CceEEEcCCcccHHHHHHHHHH
Q 003769 208 RNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 208 ~n~vLvGepGvGKTaiv~~la~ 229 (796)
.+++|+|.||||||+++..|..
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g 29 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLG 29 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999875
No 474
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=87.43 E-value=3.7 Score=46.53 Aligned_cols=44 Identities=5% Similarity=-0.064 Sum_probs=26.7
Q ss_pred CChHHHHHHHHHHhhccCceEEEcCCcccHHHHHHH-HHHHHHcC
Q 003769 191 RDSDDVMSVLNALINKKRNTVIVGGNLAAIEGVIRG-IIDQFERG 234 (796)
Q Consensus 191 pr~~ei~~vi~~L~r~k~n~vLvGepGvGKTaiv~~-la~ri~~~ 234 (796)
|+.-....+-.+|....+++++.+|+|+|||.+... +..++.++
T Consensus 95 ~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~ 139 (563)
T 3i5x_A 95 LTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINT 139 (563)
T ss_dssp CCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhc
Confidence 344443333334432578999999999999975433 34444444
No 475
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=87.43 E-value=0.49 Score=46.26 Aligned_cols=25 Identities=12% Similarity=0.056 Sum_probs=21.9
Q ss_pred ceEEEcCCcccHHHHHHHHHHHHHc
Q 003769 209 NTVIVGGNLAAIEGVIRGIIDQFER 233 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ri~~ 233 (796)
-+.++|++|+|||++++.|+..+..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHh
Confidence 4668899999999999999998754
No 476
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=87.43 E-value=1 Score=55.85 Aligned_cols=107 Identities=18% Similarity=0.222 Sum_probs=59.4
Q ss_pred CCCcchHHHHHHHHHHHhhccCCCeEEEEecCCCCCchHHHHHHHHHHH---HcCCCCCceEEecCCCCccccc-c----
Q 003769 581 VPWQKEIMPEIARTILECRSKKEQTWLLFLGADDHNHGKEKIAREIAKV---VFGSHSNNFTNLSSSQSRQDDC-R---- 652 (796)
Q Consensus 581 v~gQ~~av~~ia~~i~~~rs~~~~~~~lf~Gp~g~~vGKt~lAk~LA~~---~fg~~~~~~i~~dms~~~~~~~-~---- 652 (796)
++|=++.+..|.+.+... ......+.+.|+.| +|||+||++++.. +.+......+-+++++...... .
T Consensus 126 ~vgR~~~~~~l~~~l~~~--~~~~~~v~i~G~gG--~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 201 (1249)
T 3sfz_A 126 FVTRKKLVHAIQQKLWKL--NGEPGWVTIYGMAG--CGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQN 201 (1249)
T ss_dssp CCCCHHHHHHHHHHHHTT--TTSCEEEEEECSTT--SSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHH
T ss_pred eccHHHHHHHHHHHHhhc--cCCCCEEEEEeCCC--CCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHH
Confidence 567777777777766432 23446788999999 9999999998854 2222212344667764311100 0
Q ss_pred ccccCCC---CCCCCCCchhhHHHHHHh-----CCCEEEEEcccccC
Q 003769 653 TKKRSRD---VELGCCSYIERLGLALNE-----NPHRVFFMEDLDDH 691 (796)
Q Consensus 653 ~~k~~~~---~~~~~~~~~~~L~eavr~-----~P~~Vvl~deieka 691 (796)
.....+. .......-.+.+.+.++. +..-+|+||+++..
T Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~ 248 (1249)
T 3sfz_A 202 LCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP 248 (1249)
T ss_dssp HHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH
T ss_pred HHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH
Confidence 0000110 100111223566666662 33557889999866
No 477
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=87.42 E-value=0.31 Score=48.02 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=0.0
Q ss_pred eEEEcCCcccHHHHHHHHHHHH
Q 003769 210 TVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 210 ~vLvGepGvGKTaiv~~la~ri 231 (796)
+.|+|++|+||||+++.|+..+
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
No 478
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=87.40 E-value=0.29 Score=49.72 Aligned_cols=26 Identities=12% Similarity=0.086 Sum_probs=0.0
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
...-++|.|+||+||||+++.|++++
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
No 479
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=87.39 E-value=0.3 Score=46.98 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=0.0
Q ss_pred eEEEcCCcccHHHHHHHHHHHH
Q 003769 210 TVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 210 ~vLvGepGvGKTaiv~~la~ri 231 (796)
+.|+||.|+||||+++.|+..+
T Consensus 36 v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 36 VYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhC
No 480
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=87.39 E-value=0.24 Score=47.11 Aligned_cols=21 Identities=10% Similarity=0.169 Sum_probs=18.9
Q ss_pred ceEEEcCCcccHHHHHHHHHH
Q 003769 209 NTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 209 n~vLvGepGvGKTaiv~~la~ 229 (796)
+++++|++|||||+++..+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 688999999999999998864
No 481
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=87.36 E-value=1.3 Score=45.48 Aligned_cols=107 Identities=7% Similarity=-0.035 Sum_probs=53.1
Q ss_pred CeEE-EEecCCCCCchHHHHHHHHHHHHcCCCCCce--EEecCC-CCccccccccccCCC-CCCCCCCchhhHHHHHHhC
Q 003769 604 QTWL-LFLGADDHNHGKEKIAREIAKVVFGSHSNNF--TNLSSS-QSRQDDCRTKKRSRD-VELGCCSYIERLGLALNEN 678 (796)
Q Consensus 604 ~~~~-lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~--i~~dms-~~~~~~~~~~k~~~~-~~~~~~~~~~~L~eavr~~ 678 (796)
.||+ ++.||-| -|||+-+..++.-.-+.. ... +..-.. .|+ ..+..+.|. ..-.+-.....+.+.+ .
T Consensus 18 ~g~l~v~~G~Mg--sGKTT~lL~~~~r~~~~g-~kvli~kp~~D~Ryg---~~i~sr~G~~~~a~~i~~~~di~~~~--~ 89 (234)
T 2orv_A 18 RGQIQVILGPMF--SGKSTELMRRVRRFQIAQ-YKCLVIKYAKDTRYS---SSFCTHDRNTMEALPACLLRDVAQEA--L 89 (234)
T ss_dssp CCEEEEEECCTT--SCHHHHHHHHHHHHHTTT-CCEEEEEETTCCCC--------------CEEEEESSGGGGHHHH--T
T ss_pred ceEEEEEECCCC--CcHHHHHHHHHHHHHHCC-CeEEEEeecCCccch---HHHHhhcCCeeEEEecCCHHHHHHHh--c
Confidence 3554 5689889 999976666664443443 333 332232 232 222222221 0000001113345555 6
Q ss_pred CCEEEEEcccccCCCChHHHHHHHHHHHHcceEecCCCceecCC
Q 003769 679 PHRVFFMEDLDDHKVDSCYCQKGLKQAIENGCIALADGEIVPLK 722 (796)
Q Consensus 679 P~~Vvl~deieka~~~~~~v~~~l~q~~d~G~l~d~~G~~v~~~ 722 (796)
+|.||++||+--+ . ++..++..+-+.|.-.=..|+..||+
T Consensus 90 ~~dvViIDEaQF~--~--~v~el~~~l~~~gi~VI~~GL~~DF~ 129 (234)
T 2orv_A 90 GVAVIGIDEGQFF--P--DIVEFCEAMANAGKTVIVAALDGTFQ 129 (234)
T ss_dssp TCSEEEESSGGGC--T--THHHHHHHHHHTTCEEEEECCSBCTT
T ss_pred cCCEEEEEchhhh--h--hHHHHHHHHHhCCCEEEEEecccccc
Confidence 7999999999999 3 45555544444454444455555555
No 482
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=87.36 E-value=3.8 Score=48.17 Aligned_cols=23 Identities=4% Similarity=-0.104 Sum_probs=19.8
Q ss_pred ccCceEEEcCCcccHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGII 228 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la 228 (796)
..+|+++.||+|+|||.++...+
T Consensus 45 ~~~~~lv~apTGsGKT~~~~l~i 67 (715)
T 2va8_A 45 EGNRLLLTSPTGSGKTLIAEMGI 67 (715)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHH
T ss_pred CCCcEEEEcCCCCcHHHHHHHHH
Confidence 57899999999999999986544
No 483
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=87.36 E-value=0.28 Score=45.70 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=20.7
Q ss_pred ccCceEEEcCCcccHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ 229 (796)
+.-+++++|++|||||+++..+..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999998865
No 484
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=87.33 E-value=0.29 Score=46.46 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=20.7
Q ss_pred cCceEEEcCCcccHHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~r 230 (796)
.-+++++|++|||||+++..|...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 347899999999999999998753
No 485
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=87.31 E-value=0.27 Score=46.20 Aligned_cols=24 Identities=8% Similarity=0.228 Sum_probs=20.6
Q ss_pred ccCceEEEcCCcccHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ 229 (796)
..-+++++|++|||||+++..+..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHh
Confidence 345789999999999999998875
No 486
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=87.28 E-value=1.1 Score=50.38 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=28.5
Q ss_pred HHHHHHhh--ccCceEEEcCCcccHHHHHHHHHHHH
Q 003769 198 SVLNALIN--KKRNTVIVGGNLAAIEGVIRGIIDQF 231 (796)
Q Consensus 198 ~vi~~L~r--~k~n~vLvGepGvGKTaiv~~la~ri 231 (796)
++|+.|.- +.....|+|++|||||+++..+++..
T Consensus 136 raID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~ 171 (464)
T 3gqb_B 136 STIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQA 171 (464)
T ss_dssp HHHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHC
T ss_pred eeeecccccccCCEEEEecCCCCCchHHHHHHHHHH
Confidence 56777876 77888899999999999998887654
No 487
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=87.25 E-value=0.72 Score=48.52 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=27.0
Q ss_pred CeEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecC
Q 003769 604 QTWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSS 643 (796)
Q Consensus 604 ~~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dm 643 (796)
..-+++.||+| +|||++|+.|++.+- ...+.++.
T Consensus 33 ~~livl~G~sG--sGKSTla~~L~~~~~----~~~~~Is~ 66 (287)
T 1gvn_B 33 PTAFLLGGQPG--SGKTSLRSAIFEETQ----GNVIVIDN 66 (287)
T ss_dssp CEEEEEECCTT--SCTHHHHHHHHHHTT----TCCEEECT
T ss_pred CeEEEEECCCC--CCHHHHHHHHHHHhC----CCeEEEec
Confidence 36788999999 999999999999762 23566664
No 488
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.25 E-value=0.23 Score=50.14 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=27.0
Q ss_pred eEEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecCC
Q 003769 605 TWLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSSS 644 (796)
Q Consensus 605 ~~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dms 644 (796)
..++|.||+| +|||+||.+||+..+ + +|.-|.-
T Consensus 35 ~~ilI~GpsG--sGKStLA~~La~~g~--~---iIsdDs~ 67 (205)
T 2qmh_A 35 LGVLITGDSG--VGKSETALELVQRGH--R---LIADDRV 67 (205)
T ss_dssp EEEEEECCCT--TTTHHHHHHHHTTTC--E---EEESSEE
T ss_pred EEEEEECCCC--CCHHHHHHHHHHhCC--e---EEecchh
Confidence 4578999999 999999999998753 3 6766654
No 489
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=87.22 E-value=0.29 Score=45.90 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=20.2
Q ss_pred cCceEEEcCCcccHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ 229 (796)
+-+++++|++|||||+++..+..
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 45789999999999999998874
No 490
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=87.18 E-value=0.53 Score=44.79 Aligned_cols=26 Identities=23% Similarity=0.519 Sum_probs=23.0
Q ss_pred CCeEEEEecCCCCCchHHHHHHHHHHHH
Q 003769 603 EQTWLLFLGADDHNHGKEKIAREIAKVV 630 (796)
Q Consensus 603 ~~~~~lf~Gp~g~~vGKt~lAk~LA~~~ 630 (796)
+...+++.||.| .|||++++.|+..+
T Consensus 7 ~g~~i~l~G~~G--sGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSG--SGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTT--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCC--CCHHHHHHHHHHhh
Confidence 345788999999 99999999999986
No 491
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=87.13 E-value=0.42 Score=45.26 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=22.6
Q ss_pred CeEEEEecCCCCCchHHHHHHHHHHHH
Q 003769 604 QTWLLFLGADDHNHGKEKIAREIAKVV 630 (796)
Q Consensus 604 ~~~~lf~Gp~g~~vGKt~lAk~LA~~~ 630 (796)
.-++++.|+.| .|||++|+.||+.+
T Consensus 7 ~~~i~l~G~~G--sGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMG--SGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTT--SSHHHHHHHHHHHH
T ss_pred cceEEEECCCC--CCHHHHHHHHHHHh
Confidence 45789999999 99999999999987
No 492
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.12 E-value=0.29 Score=46.82 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=21.7
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~r 230 (796)
+.-+++++|.+|||||+++..|...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 4568999999999999999998864
No 493
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=87.10 E-value=0.27 Score=46.18 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=20.2
Q ss_pred ccCceEEEcCCcccHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ 229 (796)
..-+++++|++|||||+++..+..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 345789999999999999988753
No 494
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=87.09 E-value=0.29 Score=46.82 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=20.6
Q ss_pred ccCceEEEcCCcccHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ 229 (796)
..-+++++|++|||||+++..+..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEEECCCCCCHHHHHHHHhc
Confidence 345789999999999999998875
No 495
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=87.03 E-value=0.32 Score=52.44 Aligned_cols=32 Identities=19% Similarity=0.405 Sum_probs=26.6
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHcCCCCCceEEecC
Q 003769 606 WLLFLGADDHNHGKEKIAREIAKVVFGSHSNNFTNLSS 643 (796)
Q Consensus 606 ~~lf~Gp~g~~vGKt~lAk~LA~~~fg~~~~~~i~~dm 643 (796)
-+++.||+| +|||++|++||+.+ +.. +|..|-
T Consensus 7 ~i~i~GptG--sGKTtla~~La~~l-~~~---iis~Ds 38 (323)
T 3crm_A 7 AIFLMGPTA--AGKTDLAMALADAL-PCE---LISVDS 38 (323)
T ss_dssp EEEEECCTT--SCHHHHHHHHHHHS-CEE---EEEECT
T ss_pred EEEEECCCC--CCHHHHHHHHHHHc-CCc---EEeccc
Confidence 578999999 99999999999986 433 677764
No 496
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=86.98 E-value=0.3 Score=45.97 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=20.2
Q ss_pred cCceEEEcCCcccHHHHHHHHHH
Q 003769 207 KRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 207 k~n~vLvGepGvGKTaiv~~la~ 229 (796)
.-+++++|++|||||+++..+..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 45789999999999999998865
No 497
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=86.97 E-value=0.31 Score=45.72 Aligned_cols=25 Identities=8% Similarity=0.100 Sum_probs=21.4
Q ss_pred ccCceEEEcCCcccHHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIIDQ 230 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~r 230 (796)
..-+++++|++|||||+++..+...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3457999999999999999988753
No 498
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=86.95 E-value=0.31 Score=46.08 Aligned_cols=24 Identities=8% Similarity=0.124 Sum_probs=21.0
Q ss_pred ccCceEEEcCCcccHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ 229 (796)
..-+++++|++|||||+++..+..
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhh
Confidence 456899999999999999998875
No 499
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=86.90 E-value=0.25 Score=46.80 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=21.0
Q ss_pred ccCceEEEcCCcccHHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGIID 229 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la~ 229 (796)
+..+++|+|++|||||+++..+..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 456899999999999999998874
No 500
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.90 E-value=0.23 Score=47.09 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=19.8
Q ss_pred ccCceEEEcCCcccHHHHHHHHH
Q 003769 206 KKRNTVIVGGNLAAIEGVIRGII 228 (796)
Q Consensus 206 ~k~n~vLvGepGvGKTaiv~~la 228 (796)
++-+++++|++|||||+++..+.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 45689999999999999997664
Done!