Query 003770
Match_columns 796
No_of_seqs 365 out of 2120
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 11:43:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003770.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003770hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 1E-151 2E-156 1352.5 82.7 761 7-773 18-797 (832)
2 KOG1650 Predicted K+/H+-antipo 100.0 4E-123 1E-127 1089.0 57.8 753 11-774 2-768 (769)
3 PRK03562 glutathione-regulated 100.0 3.4E-46 7.4E-51 435.5 47.0 401 32-462 5-411 (621)
4 PRK10669 putative cation:proto 100.0 1.2E-45 2.6E-50 429.8 46.5 374 34-429 8-390 (558)
5 PRK03659 glutathione-regulated 100.0 5.1E-45 1.1E-49 425.2 47.2 370 33-429 6-378 (601)
6 COG0475 KefB Kef-type K+ trans 100.0 5.1E-44 1.1E-48 395.7 45.0 377 32-429 6-386 (397)
7 PRK05326 potassium/proton anti 100.0 1.5E-39 3.3E-44 378.4 38.9 379 31-428 5-388 (562)
8 PF00999 Na_H_Exchanger: Sodiu 100.0 2.4E-39 5.3E-44 361.2 -3.9 373 39-427 3-378 (380)
9 TIGR00932 2a37 transporter, mo 100.0 1.2E-34 2.6E-39 308.2 31.9 270 42-331 2-273 (273)
10 COG4651 RosB Kef-type K+ trans 100.0 1.4E-32 3E-37 274.7 31.7 381 28-432 3-392 (408)
11 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 5.6E-28 1.2E-32 277.6 39.6 368 19-399 2-386 (810)
12 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 1.2E-27 2.6E-32 274.8 38.4 367 38-426 4-407 (525)
13 COG0025 NhaP NhaP-type Na+/H+ 100.0 6.9E-25 1.5E-29 245.1 40.2 380 32-427 6-406 (429)
14 TIGR00840 b_cpa1 sodium/hydrog 99.9 5.5E-24 1.2E-28 244.2 37.4 379 34-427 11-416 (559)
15 COG3263 NhaP-type Na+/H+ and K 99.9 5.4E-23 1.2E-27 215.8 27.4 352 32-404 7-361 (574)
16 KOG1965 Sodium/hydrogen exchan 99.8 1.3E-18 2.9E-23 191.8 22.3 386 33-428 36-455 (575)
17 KOG4505 Na+/H+ antiporter [Ino 99.8 5.6E-17 1.2E-21 165.1 24.7 346 37-395 19-382 (467)
18 PRK14853 nhaA pH-dependent sod 99.7 5.2E-15 1.1E-19 161.4 33.5 271 92-396 62-363 (423)
19 PRK11175 universal stress prot 99.6 3.5E-15 7.6E-20 161.5 16.6 280 452-769 4-299 (305)
20 TIGR00773 NhaA Na+/H+ antiport 99.4 1.7E-11 3.6E-16 131.5 24.0 270 92-396 52-344 (373)
21 cd01988 Na_H_Antiporter_C The 99.4 2.5E-12 5.4E-17 120.7 12.4 131 453-607 1-131 (132)
22 KOG1966 Sodium/hydrogen exchan 99.3 2.1E-12 4.6E-17 142.2 4.3 372 41-427 51-448 (670)
23 PRK14856 nhaA pH-dependent sod 99.1 1.4E-08 3E-13 111.0 24.2 269 92-396 68-398 (438)
24 PRK09560 nhaA pH-dependent sod 99.1 2.9E-08 6.3E-13 106.9 24.4 269 93-396 60-353 (389)
25 cd01989 STK_N The N-terminal d 99.0 1.7E-09 3.7E-14 103.6 12.3 139 453-611 1-146 (146)
26 PRK09561 nhaA pH-dependent sod 99.0 5.4E-08 1.2E-12 104.6 24.0 270 92-396 59-351 (388)
27 PRK14854 nhaA pH-dependent sod 99.0 1.8E-07 3.9E-12 100.2 26.2 272 92-397 56-349 (383)
28 PRK14855 nhaA pH-dependent sod 99.0 1.1E-07 2.4E-12 103.6 24.0 266 93-397 64-384 (423)
29 PRK15456 universal stress prot 99.0 2E-09 4.3E-14 102.7 8.6 136 452-606 3-140 (142)
30 PRK15005 universal stress prot 98.9 4.2E-09 9.1E-14 100.5 9.8 135 452-606 3-142 (144)
31 cd01987 USP_OKCHK USP domain i 98.9 9.1E-09 2E-13 95.5 9.8 121 453-606 1-122 (124)
32 PF00582 Usp: Universal stress 98.9 1E-08 2.3E-13 96.0 9.4 133 452-607 3-139 (140)
33 PRK15118 universal stress glob 98.8 1.9E-08 4.1E-13 96.1 10.7 133 452-607 4-137 (144)
34 PRK09982 universal stress prot 98.8 1.2E-08 2.6E-13 97.4 8.8 132 452-606 4-136 (142)
35 PF06965 Na_H_antiport_1: Na+/ 98.8 6E-08 1.3E-12 104.3 12.9 279 92-404 55-359 (378)
36 COG3004 NhaA Na+/H+ antiporter 98.8 1.9E-06 4E-11 89.0 22.3 257 101-397 71-355 (390)
37 PRK10116 universal stress prot 98.6 2.8E-07 6E-12 87.7 11.5 134 452-608 4-138 (142)
38 PRK11175 universal stress prot 98.5 1.8E-07 3.9E-12 101.2 8.9 143 451-612 152-303 (305)
39 cd00293 USP_Like Usp: Universa 98.5 6.4E-07 1.4E-11 82.8 11.2 129 453-606 1-129 (130)
40 cd01989 STK_N The N-terminal d 98.2 1.2E-05 2.7E-10 76.7 10.5 133 626-770 1-145 (146)
41 COG0589 UspA Universal stress 98.1 2.9E-05 6.2E-10 74.2 10.9 142 452-607 6-150 (154)
42 cd01988 Na_H_Antiporter_C The 98.0 3.7E-05 8E-10 71.7 10.3 130 626-769 1-132 (132)
43 PF00582 Usp: Universal stress 98.0 2E-05 4.4E-10 73.5 8.2 135 624-768 2-139 (140)
44 PRK12460 2-keto-3-deoxyglucona 97.9 0.0026 5.7E-08 67.2 23.4 254 101-430 51-307 (312)
45 PRK09982 universal stress prot 97.9 3.2E-05 7E-10 73.7 6.9 40 624-663 3-42 (142)
46 PF05684 DUF819: Protein of un 97.8 0.044 9.5E-07 60.8 31.9 303 55-402 24-352 (378)
47 PRK10116 universal stress prot 97.8 6.7E-05 1.4E-09 71.2 7.6 129 624-769 3-138 (142)
48 cd01987 USP_OKCHK USP domain i 97.7 0.00021 4.6E-09 66.1 9.9 121 626-768 1-123 (124)
49 PRK15005 universal stress prot 97.7 0.00022 4.7E-09 67.8 9.8 132 624-768 2-143 (144)
50 PRK15118 universal stress glob 97.6 0.00013 2.8E-09 69.5 7.1 38 624-661 3-40 (144)
51 PF03812 KdgT: 2-keto-3-deoxyg 97.6 0.018 3.8E-07 60.7 22.3 171 101-338 51-222 (314)
52 cd00293 USP_Like Usp: Universa 97.5 0.0004 8.7E-09 63.8 8.3 101 626-731 1-103 (130)
53 PRK12652 putative monovalent c 97.5 0.0012 2.6E-08 72.3 13.0 130 452-604 6-146 (357)
54 COG0786 GltS Na+/glutamate sym 97.4 0.045 9.9E-07 59.3 22.7 155 237-392 171-359 (404)
55 PF03616 Glt_symporter: Sodium 97.3 0.13 2.9E-06 56.9 27.1 90 283-378 247-342 (368)
56 TIGR00698 conserved hypothetic 97.3 0.32 7E-06 52.9 29.0 84 51-143 26-110 (335)
57 COG0798 ACR3 Arsenite efflux p 97.3 0.19 4.2E-06 53.5 26.1 179 59-253 20-202 (342)
58 PRK15456 universal stress prot 97.2 0.0015 3.3E-08 62.0 9.2 131 624-768 2-141 (142)
59 COG0385 Predicted Na+-dependen 97.2 0.34 7.5E-06 51.8 26.5 147 92-253 35-191 (319)
60 TIGR00793 kdgT 2-keto-3-deoxyg 97.1 0.048 1E-06 57.1 18.7 259 101-429 51-312 (314)
61 PRK12652 putative monovalent c 97.0 0.0031 6.7E-08 69.1 10.1 104 623-731 4-123 (357)
62 PF03601 Cons_hypoth698: Conse 96.8 0.59 1.3E-05 50.3 25.3 85 53-147 23-109 (305)
63 PF13593 DUF4137: SBF-like CPA 96.7 0.84 1.8E-05 49.5 25.7 113 94-216 30-147 (313)
64 PF03390 2HCT: 2-hydroxycarbox 96.7 0.37 8.1E-06 53.3 22.7 255 110-401 109-394 (414)
65 COG3180 AbrB Putative ammonia 96.7 1.3 2.8E-05 47.9 27.7 301 33-397 7-319 (352)
66 PRK03562 glutathione-regulated 96.5 0.098 2.1E-06 62.3 18.2 117 263-383 9-126 (621)
67 COG3493 CitS Na+/citrate sympo 96.4 0.45 9.9E-06 51.2 20.4 85 316-402 327-414 (438)
68 TIGR00832 acr3 arsenical-resis 96.3 1.5 3.2E-05 48.0 24.6 103 98-211 46-152 (328)
69 PRK05274 2-keto-3-deoxyglucona 96.3 0.36 7.8E-06 52.3 19.1 45 103-147 55-99 (326)
70 TIGR00932 2a37 transporter, mo 96.2 0.19 4.1E-06 53.4 17.0 130 270-405 3-134 (273)
71 PRK03659 glutathione-regulated 96.1 0.23 5.1E-06 58.9 18.4 114 264-381 10-124 (601)
72 PRK10669 putative cation:proto 96.0 0.27 5.9E-06 58.0 18.2 133 265-403 12-145 (558)
73 TIGR00210 gltS sodium--glutama 95.8 4.2 9.1E-05 45.5 31.4 92 282-376 244-338 (398)
74 PF05145 AmoA: Putative ammoni 95.8 3.6 7.8E-05 44.7 24.7 128 264-398 157-287 (318)
75 PF03601 Cons_hypoth698: Conse 95.7 0.39 8.4E-06 51.7 16.1 129 266-397 5-139 (305)
76 PRK10490 sensor protein KdpD; 95.5 0.072 1.6E-06 66.3 11.3 123 450-607 249-372 (895)
77 PF03956 DUF340: Membrane prot 95.5 0.17 3.6E-06 50.5 11.7 129 60-212 2-135 (191)
78 COG0475 KefB Kef-type K+ trans 95.3 0.72 1.6E-05 51.8 17.5 137 263-407 10-152 (397)
79 PF06826 Asp-Al_Ex: Predicted 95.2 0.5 1.1E-05 46.2 13.7 114 52-181 19-136 (169)
80 PRK05326 potassium/proton anti 95.2 0.39 8.4E-06 56.7 15.6 119 265-386 12-133 (562)
81 COG2855 Predicted membrane pro 95.1 0.32 7E-06 52.1 13.1 118 276-396 30-147 (334)
82 PF01758 SBF: Sodium Bile acid 95.1 2.2 4.8E-05 42.5 18.5 107 99-216 2-112 (187)
83 TIGR00783 ccs citrate carrier 95.0 1.6 3.4E-05 47.5 18.1 119 282-401 203-327 (347)
84 COG0589 UspA Universal stress 95.0 0.31 6.8E-06 46.0 11.7 138 623-770 4-152 (154)
85 PRK03818 putative transporter; 94.7 1 2.2E-05 52.8 16.9 126 37-180 11-141 (552)
86 TIGR00698 conserved hypothetic 94.4 1.6 3.4E-05 47.7 16.3 127 267-396 10-144 (335)
87 TIGR00844 c_cpa1 na(+)/h(+) an 94.3 1.1 2.3E-05 53.8 16.0 71 314-386 74-146 (810)
88 PLN03159 cation/H(+) antiporte 93.9 1.6 3.5E-05 53.8 17.1 44 621-664 455-500 (832)
89 TIGR00841 bass bile acid trans 93.6 12 0.00025 40.1 27.8 105 96-213 9-118 (286)
90 TIGR01625 YidE_YbjL_dupl AspT/ 93.3 0.49 1.1E-05 45.5 8.9 114 56-183 21-139 (154)
91 TIGR00831 a_cpa1 Na+/H+ antipo 92.8 1.3 2.8E-05 51.7 13.4 119 266-388 5-124 (525)
92 TIGR03082 Gneg_AbrB_dup membra 92.6 6.6 0.00014 37.9 15.9 124 267-397 3-129 (156)
93 TIGR03802 Asp_Ala_antiprt aspa 92.6 0.97 2.1E-05 53.1 12.0 90 41-146 15-112 (562)
94 PRK04972 putative transporter; 92.4 0.97 2.1E-05 53.0 11.7 118 38-180 18-140 (558)
95 TIGR03802 Asp_Ala_antiprt aspa 91.8 1.6 3.5E-05 51.3 12.5 116 53-182 412-531 (562)
96 COG2205 KdpD Osmosensitive K+ 91.6 0.87 1.9E-05 54.0 9.8 121 449-602 246-366 (890)
97 TIGR00808 malonate_madM malona 91.4 1.5 3.4E-05 43.1 9.7 108 35-149 16-133 (254)
98 TIGR03082 Gneg_AbrB_dup membra 90.1 2.2 4.9E-05 41.1 9.7 97 40-150 3-101 (156)
99 TIGR00210 gltS sodium--glutama 88.4 6.7 0.00014 43.9 13.2 165 36-211 223-393 (398)
100 COG2855 Predicted membrane pro 88.3 41 0.0009 36.4 27.5 87 51-147 32-118 (334)
101 COG2985 Predicted permease [Ge 87.3 2.2 4.8E-05 47.7 8.3 78 98-184 62-146 (544)
102 PRK10490 sensor protein KdpD; 87.1 2.7 5.9E-05 52.5 10.2 124 623-768 249-372 (895)
103 PF03547 Mem_trans: Membrane t 86.6 5.2 0.00011 44.6 11.4 135 286-428 9-146 (385)
104 PRK03359 putative electron tra 85.2 3.4 7.3E-05 43.4 8.1 108 629-754 30-149 (256)
105 PF03956 DUF340: Membrane prot 85.2 9 0.00019 38.3 10.8 49 344-392 58-106 (191)
106 TIGR00946 2a69 he Auxin Efflux 85.1 17 0.00037 39.5 14.1 134 54-209 180-314 (321)
107 PRK04972 putative transporter; 85.0 8.4 0.00018 45.3 12.2 128 41-182 390-526 (558)
108 PRK03818 putative transporter; 84.9 22 0.00047 41.8 15.6 106 59-178 403-513 (552)
109 PRK12460 2-keto-3-deoxyglucona 84.8 7.3 0.00016 41.7 10.5 75 59-146 169-243 (312)
110 COG1346 LrgB Putative effector 82.8 43 0.00093 34.2 14.3 102 38-148 12-117 (230)
111 TIGR00930 2a30 K-Cl cotranspor 82.8 1.4E+02 0.0031 37.6 42.5 130 452-612 576-710 (953)
112 PF03616 Glt_symporter: Sodium 82.6 10 0.00022 42.2 11.0 115 316-431 67-187 (368)
113 COG0025 NhaP NhaP-type Na+/H+ 81.4 36 0.00077 38.7 15.1 122 265-389 12-137 (429)
114 PRK04288 antiholin-like protei 80.8 73 0.0016 32.8 17.2 106 308-426 69-174 (232)
115 cd01984 AANH_like Adenine nucl 80.7 1.8 3.9E-05 36.9 3.4 48 551-604 35-83 (86)
116 TIGR03136 malonate_biotin Na+- 80.6 4.1 8.9E-05 44.0 6.6 113 312-432 101-216 (399)
117 PRK12342 hypothetical protein; 80.3 4.7 0.0001 42.2 7.0 95 629-742 29-137 (254)
118 PF00999 Na_H_Exchanger: Sodiu 77.3 0.98 2.1E-05 50.4 0.9 113 268-384 5-123 (380)
119 COG3263 NhaP-type Na+/H+ and K 76.9 30 0.00066 38.6 11.8 112 276-388 24-136 (574)
120 COG2431 Predicted membrane pro 76.7 44 0.00095 35.0 12.4 77 58-147 108-188 (297)
121 COG1346 LrgB Putative effector 76.7 93 0.002 31.8 18.0 110 304-426 62-171 (230)
122 PF03977 OAD_beta: Na+-transpo 76.6 4.3 9.2E-05 43.4 5.3 110 315-432 68-179 (360)
123 PF05145 AmoA: Putative ammoni 76.4 22 0.00048 38.6 11.0 101 35-149 155-257 (318)
124 COG3329 Predicted permease [Ge 75.5 88 0.0019 33.3 14.2 120 283-408 16-138 (372)
125 COG4651 RosB Kef-type K+ trans 74.9 37 0.0008 36.0 11.3 120 263-388 10-132 (408)
126 COG2086 FixA Electron transfer 74.2 13 0.00028 39.0 8.1 108 629-755 31-149 (260)
127 PRK04288 antiholin-like protei 73.7 1.1E+02 0.0024 31.6 14.4 37 111-147 83-119 (232)
128 COG0786 GltS Na+/glutamate sym 71.8 8.7 0.00019 42.2 6.3 116 315-430 68-187 (404)
129 PRK09903 putative transporter 71.2 1.1E+02 0.0024 33.1 15.0 118 302-427 192-310 (314)
130 COG2985 Predicted permease [Ge 70.0 21 0.00045 40.3 8.8 111 58-183 397-511 (544)
131 PF01012 ETF: Electron transfe 69.9 11 0.00024 36.4 6.3 123 635-783 15-148 (164)
132 TIGR02432 lysidine_TilS_N tRNA 69.0 24 0.00053 34.9 8.6 36 626-661 1-36 (189)
133 PRK09903 putative transporter 68.1 93 0.002 33.7 13.6 114 55-188 172-286 (314)
134 COG3180 AbrB Putative ammonia 66.8 78 0.0017 34.6 12.2 99 37-149 190-290 (352)
135 TIGR00946 2a69 he Auxin Efflux 66.6 1.9E+02 0.0042 31.2 27.2 136 283-426 181-319 (321)
136 PF02040 ArsB: Arsenical pump 66.1 2.4E+02 0.0052 32.0 22.7 36 172-207 117-152 (423)
137 PRK10711 hypothetical protein; 65.3 1.7E+02 0.0037 30.1 15.7 83 340-426 87-169 (231)
138 TIGR01625 YidE_YbjL_dupl AspT/ 64.9 25 0.00055 33.8 7.3 86 286-371 24-115 (154)
139 COG0679 Predicted permeases [G 64.6 1.5E+02 0.0033 32.0 14.3 105 285-392 11-117 (311)
140 COG2205 KdpD Osmosensitive K+ 62.6 28 0.00062 41.9 8.5 123 623-768 247-372 (890)
141 PF05982 DUF897: Domain of unk 62.6 42 0.0009 36.2 9.1 72 61-147 185-261 (327)
142 KOG2310 DNA repair exonuclease 61.3 12 0.00025 42.6 4.8 83 553-638 41-132 (646)
143 PRK05253 sulfate adenylyltrans 59.8 28 0.00062 37.4 7.4 39 625-663 28-66 (301)
144 PF01171 ATP_bind_3: PP-loop f 59.8 16 0.00034 36.1 5.2 57 626-693 1-57 (182)
145 TIGR02039 CysD sulfate adenyly 58.5 24 0.00052 37.8 6.6 38 626-663 21-58 (294)
146 COG3969 Predicted phosphoadeno 57.6 21 0.00046 38.3 5.8 39 623-661 26-65 (407)
147 TIGR00659 conserved hypothetic 57.6 2.3E+02 0.005 29.1 17.0 83 340-426 86-168 (226)
148 PF04172 LrgB: LrgB-like famil 56.6 1.5E+02 0.0032 30.3 11.5 36 112-147 68-103 (215)
149 PRK12563 sulfate adenylyltrans 56.4 22 0.00049 38.3 5.9 39 625-663 38-76 (312)
150 TIGR00783 ccs citrate carrier 54.4 1.1E+02 0.0024 33.5 10.8 95 47-148 194-292 (347)
151 PRK10711 hypothetical protein; 53.8 2.7E+02 0.0059 28.7 13.6 36 112-147 79-114 (231)
152 PF13593 DUF4137: SBF-like CPA 53.4 1.7E+02 0.0037 31.7 12.3 91 285-378 6-97 (313)
153 cd01992 PP-ATPase N-terminal d 53.1 62 0.0013 31.7 8.2 37 626-662 1-37 (185)
154 TIGR00659 conserved hypothetic 53.0 2.8E+02 0.006 28.6 13.7 37 111-147 77-113 (226)
155 COG1646 Predicted phosphate-bi 48.6 54 0.0012 33.6 6.7 64 539-610 15-79 (240)
156 cd01984 AANH_like Adenine nucl 48.4 19 0.00041 30.4 3.2 33 627-660 1-33 (86)
157 COG0679 Predicted permeases [G 48.4 3.8E+02 0.0083 28.9 31.1 140 282-427 166-307 (311)
158 cd01993 Alpha_ANH_like_II This 48.1 1.1E+02 0.0025 29.6 9.3 37 626-662 1-39 (185)
159 COG5505 Predicted integral mem 47.7 3.9E+02 0.0084 28.7 27.4 82 316-401 276-357 (384)
160 TIGR02185 Trep_Strep conserved 44.1 3.4E+02 0.0073 27.0 14.5 24 344-367 161-184 (189)
161 PF03812 KdgT: 2-keto-3-deoxyg 43.8 84 0.0018 33.7 7.6 73 60-145 175-247 (314)
162 PRK09535 btuC corrinoid ABC tr 43.4 5E+02 0.011 28.8 15.6 24 50-73 90-113 (366)
163 KOG1650 Predicted K+/H+-antipo 43.1 2.6E+02 0.0057 34.4 12.8 66 98-171 313-378 (769)
164 PRK10660 tilS tRNA(Ile)-lysidi 42.3 1.4E+02 0.003 34.1 9.8 59 624-693 15-74 (436)
165 PF03652 UPF0081: Uncharacteri 42.2 83 0.0018 29.5 6.7 60 550-612 37-97 (135)
166 TIGR01109 Na_pump_decarbB sodi 40.2 24 0.00052 37.8 3.0 112 313-432 60-179 (354)
167 TIGR00840 b_cpa1 sodium/hydrog 39.8 3.6E+02 0.0078 31.9 12.9 73 316-390 70-151 (559)
168 PRK04125 murein hydrolase regu 38.6 3.5E+02 0.0075 25.7 10.1 100 31-140 7-110 (141)
169 TIGR00793 kdgT 2-keto-3-deoxyg 38.3 1.8E+02 0.004 31.1 9.0 74 60-146 175-248 (314)
170 PF05684 DUF819: Protein of un 37.7 5.1E+02 0.011 28.9 13.1 96 311-411 53-152 (378)
171 PRK06806 fructose-bisphosphate 37.0 1.7E+02 0.0036 31.2 8.8 115 533-655 13-131 (281)
172 PF09605 Trep_Strep: Hypotheti 36.4 4.4E+02 0.0095 26.1 14.9 127 236-367 38-181 (186)
173 PF03977 OAD_beta: Na+-transpo 35.5 6.2E+02 0.014 27.6 25.0 253 36-341 4-269 (360)
174 PF04172 LrgB: LrgB-like famil 35.3 5E+02 0.011 26.5 18.1 82 340-425 76-157 (215)
175 COG3748 Predicted membrane pro 34.4 3.1E+02 0.0066 29.6 9.8 54 300-355 212-265 (407)
176 COG2035 Predicted membrane pro 34.4 5.8E+02 0.013 27.0 17.3 46 30-77 59-106 (276)
177 KOG0573 Asparagine synthase [A 33.9 2.3E+02 0.0049 32.0 9.2 101 589-706 225-327 (520)
178 PF03547 Mem_trans: Membrane t 33.2 6.9E+02 0.015 27.5 22.5 87 284-371 244-335 (385)
179 cd01713 PAPS_reductase This do 32.6 77 0.0017 30.1 5.1 35 626-661 1-35 (173)
180 cd01118 ArsB_permease Anion pe 32.6 7.5E+02 0.016 27.7 22.0 24 46-69 10-33 (416)
181 PF03600 CitMHS: Citrate trans 30.6 7.3E+02 0.016 26.9 16.4 17 173-189 118-134 (351)
182 TIGR02057 PAPS_reductase phosp 30.5 2.4E+02 0.0052 29.0 8.5 36 625-663 26-61 (226)
183 KOG1965 Sodium/hydrogen exchan 29.4 2E+02 0.0044 33.5 8.3 69 316-388 103-180 (575)
184 PF13194 DUF4010: Domain of un 29.1 6.2E+02 0.014 25.7 15.8 51 159-212 25-75 (211)
185 PF10136 SpecificRecomb: Site- 29.1 3.6E+02 0.0077 32.4 10.5 31 19-50 459-490 (643)
186 PRK00109 Holliday junction res 29.0 1.1E+02 0.0024 28.8 5.3 58 552-612 42-99 (138)
187 PF01507 PAPS_reduct: Phosphoa 28.5 1E+02 0.0022 29.6 5.2 32 626-661 1-32 (174)
188 TIGR00841 bass bile acid trans 27.6 6.8E+02 0.015 26.6 11.7 105 319-427 14-120 (286)
189 TIGR00342 thiazole biosynthesi 27.2 1.5E+02 0.0033 32.9 6.9 39 620-662 168-206 (371)
190 PRK12737 gatY tagatose-bisphos 26.8 2.2E+02 0.0047 30.5 7.6 74 533-613 13-86 (284)
191 PF02667 SCFA_trans: Short cha 26.7 1E+03 0.022 27.3 14.8 128 289-432 67-216 (453)
192 PF05982 DUF897: Domain of unk 26.6 8.2E+02 0.018 26.6 11.7 66 346-411 59-124 (327)
193 PRK12857 fructose-1,6-bisphosp 26.3 2.2E+02 0.0048 30.4 7.5 72 534-612 14-85 (284)
194 PF08659 KR: KR domain; Inter 26.0 3.2E+02 0.0069 26.6 8.3 84 630-731 4-91 (181)
195 COG0037 MesJ tRNA(Ile)-lysidin 25.7 2.3E+02 0.005 30.0 7.8 56 625-693 22-77 (298)
196 PF03686 UPF0146: Uncharacteri 25.6 1.1E+02 0.0025 28.3 4.4 35 542-576 73-107 (127)
197 KOG2718 Na+-bile acid cotransp 25.5 3.2E+02 0.007 30.3 8.7 32 99-130 117-148 (371)
198 PF06826 Asp-Al_Ex: Predicted 25.4 6.4E+02 0.014 24.6 11.7 88 282-372 22-115 (169)
199 TIGR01858 tag_bisphos_ald clas 24.9 2.4E+02 0.0053 30.0 7.5 74 533-613 11-84 (282)
200 PF01889 DUF63: Membrane prote 24.7 8.6E+02 0.019 25.8 17.4 28 182-209 169-196 (273)
201 PRK05274 2-keto-3-deoxyglucona 24.5 5.2E+02 0.011 28.2 10.1 46 101-146 205-250 (326)
202 TIGR01109 Na_pump_decarbB sodi 24.3 9.5E+02 0.021 26.2 18.0 75 263-340 194-268 (354)
203 PF06181 DUF989: Protein of un 23.9 9.1E+02 0.02 25.8 13.4 39 316-355 230-268 (300)
204 KOG1288 Amino acid transporter 23.8 1.4E+03 0.029 27.8 22.1 97 453-575 562-663 (945)
205 TIGR03136 malonate_biotin Na+- 23.2 1E+03 0.023 26.3 22.7 255 34-341 22-306 (399)
206 cd01985 ETF The electron trans 23.2 3.5E+02 0.0076 26.3 8.0 27 634-661 18-44 (181)
207 PF06939 DUF1286: Protein of u 23.0 1.6E+02 0.0035 26.4 4.7 57 15-72 53-110 (114)
208 COG5000 NtrY Signal transducti 22.5 9.1E+02 0.02 28.7 11.6 29 284-314 92-120 (712)
209 COG1883 OadB Na+-transporting 22.2 25 0.00054 36.9 -0.5 130 315-458 83-214 (375)
210 PRK01821 hypothetical protein; 22.2 6.6E+02 0.014 23.6 9.4 97 32-139 10-111 (133)
211 cd01994 Alpha_ANH_like_IV This 22.0 1.6E+02 0.0034 29.5 5.2 21 626-646 1-21 (194)
212 TIGR02230 ATPase_gene1 F0F1-AT 22.0 2.6E+02 0.0056 24.8 5.8 38 131-168 51-88 (100)
213 PRK01658 holin-like protein; V 22.0 6.3E+02 0.014 23.3 10.1 99 31-140 4-107 (122)
214 TIGR01520 FruBisAldo_II_A fruc 21.7 3.2E+02 0.007 30.1 7.7 89 522-613 12-111 (357)
215 COG0175 CysH 3'-phosphoadenosi 21.2 3E+02 0.0065 28.9 7.4 33 626-662 41-73 (261)
216 PRK09777 fecD iron-dicitrate t 21.2 1.1E+03 0.023 25.7 16.2 57 50-107 46-102 (318)
217 PRK04148 hypothetical protein; 21.1 1.4E+02 0.003 28.0 4.2 34 543-576 81-114 (134)
218 COG0816 Predicted endonuclease 20.9 2.2E+02 0.0048 27.0 5.5 56 552-610 41-96 (141)
219 PF02601 Exonuc_VII_L: Exonucl 20.6 1.7E+02 0.0038 31.6 5.6 48 683-731 29-85 (319)
220 TIGR00250 RNAse_H_YqgF RNAse H 20.5 2.3E+02 0.005 26.3 5.6 60 550-612 34-93 (130)
221 KOG3180 Electron transfer flav 20.3 2.1E+02 0.0046 28.5 5.3 92 634-744 39-144 (254)
222 PRK10696 tRNA 2-thiocytidine b 20.1 3E+02 0.0066 28.7 7.2 38 624-661 29-68 (258)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=1e-151 Score=1352.50 Aligned_cols=761 Identities=52% Similarity=0.922 Sum_probs=692.3
Q ss_pred CCCCCCcCCCCCcccCCCCCCccHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhcCccccCCchhhhccccC
Q 003770 7 ACPAPMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFP 86 (796)
Q Consensus 7 ~c~~~~~~~s~g~~~~~~pl~~~l~~~l~~i~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp 86 (796)
+|+.+.+.+|+|+|+|+||++|++|++++|+++++++++++++++||+|||+++|||++|+++||+++|++..+.+.+||
T Consensus 18 ~c~~~~~~~s~g~~~g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp 97 (832)
T PLN03159 18 VCYAPMMITTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFP 97 (832)
T ss_pred ccccCCCccCCcccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCC
Confidence 59966578999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHH
Q 003770 87 PKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVA 166 (796)
Q Consensus 87 ~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ 166 (796)
.++.+.+++++++|++++||++|+|+|++.+||++|+++.+|+.++++|+++|+.+++++.. ...........+++|++
T Consensus 98 ~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~-~~~~~~~~~~~l~~g~a 176 (832)
T PLN03159 98 LRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQ-VSRNVHQGTFILFLGVA 176 (832)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccchhHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999988887743 21112223567899999
Q ss_pred HhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHhhHHHH
Q 003770 167 LSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTF 246 (796)
Q Consensus 167 ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~ 246 (796)
+|.||+|+++++|+|+|+++++.||+++++++++|+++|++++++..+...+......+|.++..+++++++.+++||++
T Consensus 177 lS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~l~~~l~~~~f~~~~~~v~r~~~ 256 (832)
T PLN03159 177 LSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVVRPGI 256 (832)
T ss_pred HHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877655443334466777777788888889999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHhhh
Q 003770 247 KWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSS 326 (796)
Q Consensus 247 ~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~ 326 (796)
.|+.++++++++.++.++.+++++++++++++|.+|+|+++|||++|+++|+ +++++++.+|++++++++|+|+||+++
T Consensus 257 ~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~-~~~~~~l~ekle~~~~~lflPlFFv~v 335 (832)
T PLN03159 257 WWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGVTLIEKLEDFVSGLLLPLFFAIS 335 (832)
T ss_pred HHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCC-cchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988888999999999999999999999999999999999999995 789999999999999999999999999
Q ss_pred hccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCChhHHH
Q 003770 327 GLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFA 406 (796)
Q Consensus 327 G~~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~~ 406 (796)
|+++|+..+.+...|..+++++++++++|+++++++++++|+|++|++.+|++|++||++++++++++++.|+++++.|+
T Consensus 336 Gl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~f~ 415 (832)
T PLN03159 336 GLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFA 415 (832)
T ss_pred hheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchhhh
Confidence 99999988865445666667778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhhhhhhhccccccccccCCCCCcceEEEEeecCCChhhHHHHHHHhccCCCCCCceEE
Q 003770 407 IMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVY 486 (796)
Q Consensus 407 ~lvl~~lv~t~i~~pl~~~l~~~~~~~~~~~~~~~~i~~~~~~~elriLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~ 486 (796)
+++++++++|.+++|++.++|+|++|+. .|++|++|+.++++|+|||+|+|++++++++++|+++++++ +++|+++|
T Consensus 416 ~lVl~avl~T~i~~Plv~~ly~p~rk~~--~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t-~~sp~~vy 492 (832)
T PLN03159 416 VMVLVAVAMTALITPVVTVVYRPARRLV--GYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPT-KRSPICIY 492 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHhhhc--cccccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCC-CCCCceEE
Confidence 9999999999999999999999999999 99999999999999999999999999999999999999999 89999999
Q ss_pred EEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHHhhhc-cCeEEEEeEEecCCCChHHHHHHHHHhcCc
Q 003770 487 ALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAFQQL-SRVSVRPMTAISSMSDMHEDICTTAESKRA 565 (796)
Q Consensus 487 ~lhlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~-~~v~v~~~~~vs~~~~m~~dI~~~A~e~~a 565 (796)
++||||+++|+++++++|+.+++..+..++ +..++|+++++|++|+++ ++++|+++|++|||++||+|||++|+|+++
T Consensus 493 ~lhLveL~~r~~~~l~~h~~~~~~~~~~~~-~~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~ 571 (832)
T PLN03159 493 VLHLVELTGRASAMLIVHNTRKSGRPALNR-TQAQSDHIINAFENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRV 571 (832)
T ss_pred EEEEEeecCCCccceeeeeccccccccccc-ccccccHHHHHHHHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCC
Confidence 999999999999999999875443321111 135589999999999976 589999999999999999999999999999
Q ss_pred cEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEecCCCCCCcccccCCcceEEEEeccCCcChHHHHHHHH
Q 003770 566 AIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGA 645 (796)
Q Consensus 566 ~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgIlvdrg~~~~~~~~~~~~~~~i~~~f~GG~ddreAL~~a~ 645 (796)
|+||+||||+|+.||++++.+..+|.+|+|||++||||||||||||.++..+....+..+||+++|+|||||||||+||+
T Consensus 572 slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~~~~~~~~~v~~~F~GG~DDREALa~a~ 651 (832)
T PLN03159 572 SLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLASNQVSHHVAVLFFGGPDDREALAYAW 651 (832)
T ss_pred CEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCccccccccccceeEEEEecCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997644333445567899999999999999999999
Q ss_pred HHhcCCCeEEEEEEeeecccccCCc------------cc--cCCcCccccHHHHHHHHHhhcCCCCceEEEEEEecChHH
Q 003770 646 RMAEHPGISFIVIRFLLAADAIGNT------------VS--VDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLVRNTAE 711 (796)
Q Consensus 646 rma~~~~v~ltvv~~~~~~~~~~~~------------~~--~~~~~~~~~d~~~~~~~~~~~~~~~~v~~~e~~v~~~~~ 711 (796)
|||+||++++||+||++.++...+. +. .+++.|+++||++++|||.++..+++|.|+||+|+||+|
T Consensus 652 rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y~E~~V~~~~e 731 (832)
T PLN03159 652 RMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTEKVVSNGEE 731 (832)
T ss_pred HHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCceEEEEEecCCHHH
Confidence 9999999999999999754322100 00 123568889999999999999888999999999999999
Q ss_pred HHHHHHhccC-CCEEEEccCC--CchhhcccccCCCCCccccchhhhccCCCCc-eeEEEEeeecc
Q 003770 712 TIAVIREVSR-CNLLLVGRMP--DGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQQYSD 773 (796)
Q Consensus 712 ~~~~l~~~~~-~DL~iVGr~~--~~~~~~gl~~w~e~~eLG~igd~las~d~~~-~SvLvvqq~~~ 773 (796)
|.+++|++++ |||+||||+| +|++++||+||+||||||+|||+|||+||.+ +||||||||+.
T Consensus 732 ~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~~~SVLVvQQ~~~ 797 (832)
T PLN03159 732 TVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQQYVG 797 (832)
T ss_pred HHHHHHHhhccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCCceeEEEEEeecc
Confidence 9999999998 9999999998 5999999999999999999999999999999 99999999983
No 2
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-123 Score=1088.97 Aligned_cols=753 Identities=50% Similarity=0.805 Sum_probs=684.0
Q ss_pred CCcCCCCCcccCCCCCCccHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhcCccccCCchhhhccccCCCcH
Q 003770 11 PMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQ 90 (796)
Q Consensus 11 ~~~~~s~g~~~~~~pl~~~l~~~l~~i~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~ 90 (796)
+++.++.|.|+|+||++|++|++++|+.+++++++++++++||+|||++++++++||++||+.+|++..+.+.+||.++.
T Consensus 2 ~~~~~~~g~~~~~~~~~~~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~ 81 (769)
T KOG1650|consen 2 WVKATSNGVFPGVNPLKYALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSM 81 (769)
T ss_pred CCccccCCcccCCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCch----hHHHHHHHHH
Q 003770 91 TVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDS----TSFLVFMGVA 166 (796)
Q Consensus 91 ~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~i~~~~~~~~~~~l~~~~~~~~~~----~~~~l~lg~~ 166 (796)
..+++++++|+.+++|+.|+|+|.+.++|++|++..+|+.++++|++.|..+...+.......... ..+..++..+
T Consensus 82 ~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (769)
T KOG1650|consen 82 IVLELLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSA 161 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988887775333211111 1256788899
Q ss_pred HhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHHHHHHHHHhhHHH
Q 003770 167 LSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQ-SSLVPVWVFLSGCVFVICLTLFVPPT 245 (796)
Q Consensus 167 ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~v~~~~ 245 (796)
+|.|+||+++++|.|+|++++++||+++++++++|+.+|.++.+..++..... .+....|.+...+++++++.++++|.
T Consensus 162 ~s~tsfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~p~ 241 (769)
T KOG1650|consen 162 QSITSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRSVWDLVLVIGFVLFLFFVVRPL 241 (769)
T ss_pred hhcchhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHheeeehhhh
Confidence 99999999999999999999999999999999999999999988887766543 34567888888899999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHh
Q 003770 246 FKWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIG-IHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFV 324 (796)
Q Consensus 246 ~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g-~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~ 324 (796)
+.|+.||+|++++.++.+...++..+++++.+++.++ .|+++|||+.|+++|+++|+++.+.+|+|++.+++|+|+||+
T Consensus 242 ~~wi~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~ 321 (769)
T KOG1650|consen 242 MKWIIKRTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFA 321 (769)
T ss_pred HHHHhhcCCCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred hhhccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCChhH
Q 003770 325 SSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQV 404 (796)
Q Consensus 325 ~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~ 404 (796)
..|+++|+..+.. |......+...+++|++++..++.++|+|+||++.+|++|++||.+++.+++.+.+.++++.+.
T Consensus 322 ~~G~k~di~~i~~---~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~ 398 (769)
T KOG1650|consen 322 ISGLKTDISRINK---WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEG 398 (769)
T ss_pred hhccceeHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccch
Confidence 9999999998874 7777788889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhccccccccccCCCCCcceEEEEeecCCChhhHHHHHHHhccCCCCCCce
Q 003770 405 FAIMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLC 484 (796)
Q Consensus 405 ~~~lvl~~lv~t~i~~pl~~~l~~~~~~~~~~~~~~~~i~~~~~~~elriLv~v~~~~~~~~li~ll~~~~~~~~~~p~~ 484 (796)
|++++++++++|.+++|++..+|+|.+++. .|++|++|+.++++|+|++.|+|++++.+++++++|++.++ +++|++
T Consensus 399 f~~~vl~alv~t~I~~~~l~~~y~p~~~~~--~y~~~~i~~~~~~~~Lril~cl~~~~~is~~i~~le~~~~~-~~~p~~ 475 (769)
T KOG1650|consen 399 FTVMVLMALVSTFITPPLLMFLYDPTRKYH--GYKKRGIQHLKPNSELRILTCLHGPENISGIINLLELSSGS-LESPLS 475 (769)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhcchhhhcC--ceEeehhhhcCCCCceEEEEEecCCCcchHHHHHHHHcCCC-CCCCcc
Confidence 999999999999999999999999999999 89999999999999999999999999999999999999988 667999
Q ss_pred EEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHHhhhc--cCeEEEEeEEecCCCChHHHHHHHHHh
Q 003770 485 VYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAFQQL--SRVSVRPMTAISSMSDMHEDICTTAES 562 (796)
Q Consensus 485 v~~lhlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~--~~v~v~~~~~vs~~~~m~~dI~~~A~e 562 (796)
+|++|+||+.+|+.|++++|+.++++... .+...++++..+|+.|++. .++.++++|+++|+++||||||.+|.+
T Consensus 476 v~~lhlveL~~~~~~~li~h~~~~~~~~~---~~s~~~~~i~~aF~~f~~~~~~~v~v~~~Ta~s~~~~m~edic~la~~ 552 (769)
T KOG1650|consen 476 VYALHLVELVGRATPLLISHKLRKNGRVE---SRSSSSDQINVAFEAFEKLSQEGVMVRTFTALSPEKLMHEDICTLALD 552 (769)
T ss_pred eeeeeeeecccccchhhhhhhhccccccc---cccccchhhHHHHHHHHHhcCCcEEEEeehhhCChhhchhhhhHHHHh
Confidence 99999999999999999999876653221 1124567999999999984 679999999999999999999999999
Q ss_pred cCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEecCCCCCCcccccCCcceEEEEeccCCcChHHHHH
Q 003770 563 KRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALA 642 (796)
Q Consensus 563 ~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgIlvdrg~~~~~~~~~~~~~~~i~~~f~GG~ddreAL~ 642 (796)
+++++|++||||+|+.++.+++.+..+|.+|++|+++|||||||+||||.......+.....++|+++|+||+||||||+
T Consensus 553 ~~~~liilpfhk~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg~~~~~~~~~~~~~~~v~~lF~GG~DDrEALa 632 (769)
T KOG1650|consen 553 KGVSLIILPFHKHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDRGLRRSGVTQKRGSSYKVVVLFLGGKDDREALA 632 (769)
T ss_pred hCCcEEEeehhhhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEecCcccccceecccceeEEEEEecCChhhHHHHH
Confidence 99999999999999966689999999999999999999999999999983211122233377899999999999999999
Q ss_pred HHHHHhcCCCeEEEEEEeeecccccCCccccCCcCccccHHHHHHHH-HhhcCCCCceEEE-EEEecChHHHHHHHHhcc
Q 003770 643 CGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEF-KLKTSRNGSVRYE-ERLVRNTAETIAVIREVS 720 (796)
Q Consensus 643 ~a~rma~~~~v~ltvv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~v~~~-e~~v~~~~~~~~~l~~~~ 720 (796)
+++||++||.+++||+||.+.++...+ ....++++.+|++..+++ +.....+.++.|. ||.|.++.||.++++++.
T Consensus 633 ~~~rm~~~~~v~lTVirf~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ek~v~~~~et~~~~~~~~ 710 (769)
T KOG1650|consen 633 LAKRMAENPRVTLTVIRFFPDESKYNR--KVLVEVGKMLDQEGLEDFVKSTRESNLDIIYAEEKIVLNGAETTALLRSIT 710 (769)
T ss_pred HHHHHhhCCceEEEEEEeeccchhhcc--cccchhhhhhhhhHHHHHHHHhhhchhhhhhhhHHHHhcchhHHHHHHHhc
Confidence 999999999999999999986553300 002367788888888888 6555556678888 699999999999999999
Q ss_pred C-CCEEEEccCC--CchhhcccccCCCCCccccchhhhccCCCCc-eeEEEEeeeccc
Q 003770 721 R-CNLLLVGRMP--DGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQQYSDR 774 (796)
Q Consensus 721 ~-~DL~iVGr~~--~~~~~~gl~~w~e~~eLG~igd~las~d~~~-~SvLvvqq~~~~ 774 (796)
+ |||++|||++ +++.++|++||+||||||+|||.|+|+||.+ +||||+|||...
T Consensus 711 ~~ydL~ivGr~~~~~~~~t~gl~~W~e~pELg~IGd~las~~~~~~~svlvvqq~~~~ 768 (769)
T KOG1650|consen 711 EDYDLFIVGRSHGMLSEATGGLSEWSECPELGVIGDLLASSDFSSKVSVLVVQQQLYS 768 (769)
T ss_pred cccceEEEecccccccchhcCchhcccCccccccCccccccccCccceEEEEEeeecC
Confidence 9 9999999998 8999999999999999999999999999988 999999999754
No 3
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=3.4e-46 Score=435.50 Aligned_cols=401 Identities=20% Similarity=0.332 Sum_probs=323.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 003770 32 LAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLE 111 (796)
Q Consensus 32 ~~l~~i~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle 111 (796)
.++.++.+++.++.++..++||+|+|+++|||++|+++||+++|.+. ..+.++.++++|++++||.+|+|
T Consensus 5 ~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~----------~~~~i~~laelGvv~LlF~iGLE 74 (621)
T PRK03562 5 HTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVT----------DVESILHFAEFGVVLMLFVIGLE 74 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCC----------CHHHHHHHHHHHHHHHHHHHHhC
Confidence 47899999999999999999999999999999999999999999764 24568899999999999999999
Q ss_pred cCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHH
Q 003770 112 LDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGR 191 (796)
Q Consensus 112 ~d~~~l~~~~~~~~~ia~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~ 191 (796)
+|++.+|+.+|+++.+|..++++|+++++.++++++.. +..++++|.+++.||++++.++++|+|+++++.||
T Consensus 75 l~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~~-------~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~ 147 (621)
T PRK03562 75 LDPQRLWKLRRSIFGGGALQMVACGGLLGLFCMLLGLR-------WQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGR 147 (621)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHH
Confidence 99999999999999999999999998888777666432 25788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ChhHHH-HHHHHHH----HHHHHHHhhHHHHHHHHHHhcCCCCcchHHHH
Q 003770 192 MAMSAAAVNDVAAWILLALAVALSGSGQS-SLVPVW-VFLSGCV----FVICLTLFVPPTFKWMARQCHEGEPVEETYVC 265 (796)
Q Consensus 192 l~ls~a~i~D~~~~~ll~i~~~~~~~~~~-~~~~~~-~~~~~i~----~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~ 265 (796)
.+++.++++|+.+|++++++..+...+.. .....| ..+..++ ++++..++.+|+++|+.++ ..+|.+..
T Consensus 148 ~~l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~-----~~~e~~~~ 222 (621)
T PRK03562 148 SAFAILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARS-----GLREVFTA 222 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCchHHHH
Confidence 99999999999999999887665443211 112222 2222222 2222334555666555443 24678888
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhHHHHH
Q 003770 266 ATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLA 345 (796)
Q Consensus 266 ~~l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~ 345 (796)
.+++++++++++++.+|+|+++|||++|+++++ .+++++++++++++. ++|+|+||+++|+++|+..+.. .|..++
T Consensus 223 ~~l~lv~~~a~la~~~Gls~~lGAFlAGl~l~~-~~~~~~le~~i~pf~-~lll~lFFi~vG~~id~~~l~~--~~~~il 298 (621)
T PRK03562 223 VALFLVFGFGLLMEEVGLSMALGAFLAGVLLAS-SEYRHALESDIEPFK-GLLLGLFFIAVGMSIDFGTLLE--NPLRIL 298 (621)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcC-CccHHHHHHHHHHHH-HHHHHHHHHHhhhhccHHHHHH--HHHHHH
Confidence 889999999999999999999999999999994 789999999999995 9999999999999999987763 333445
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHHhHHHHHHH
Q 003770 346 LVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMA 425 (796)
Q Consensus 346 ~i~~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~~~lvl~~lv~t~i~~pl~~~ 425 (796)
.++++.+++|++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.+++++ +.|++.+|++..
T Consensus 299 ~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v-~lS~~~tP~l~~ 377 (621)
T PRK03562 299 ILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAV-ALSMAATPLLLV 377 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 5566788999999999999999999999999999999999999999999999999999999998755 557777777777
Q ss_pred HhhhhhhhhhccccccccccCCCCCcceEEEEeecCC
Q 003770 426 VYKPARRARVADYKHRTVERKNSKAQFRILACFHSAR 462 (796)
Q Consensus 426 l~~~~~~~~~~~~~~~~i~~~~~~~elriLv~v~~~~ 462 (796)
+|++..... ..+.+. ++..++.+-|+++|-++.-
T Consensus 378 ~~~~~~~~~--~~~~~~-~~~~~~~~~~vII~G~Gr~ 411 (621)
T PRK03562 378 LLDRLEQSR--TEEARE-ADEIDEQQPRVIIAGFGRF 411 (621)
T ss_pred hhhHHHHHH--hhhccc-ccccccccCcEEEEecChH
Confidence 765542211 001111 1111122467888877543
No 4
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=1.2e-45 Score=429.75 Aligned_cols=374 Identities=22% Similarity=0.297 Sum_probs=314.8
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccC
Q 003770 34 ILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELD 113 (796)
Q Consensus 34 l~~i~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle~d 113 (796)
+..+.++++++.+++.++||+|+|++++||++|+++||+++|... ..+.++.++++|++++||.+|+|+|
T Consensus 8 ~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~----------~~~~~~~la~lGli~llF~~Gle~d 77 (558)
T PRK10669 8 ITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVA----------DTKLAPELAELGVILLMFGVGLHFS 77 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCcccccccc----------chHHHHHHHHHHHHHHHHHhHhcCC
Confidence 556788899999999999999999999999999999999998753 2357899999999999999999999
Q ss_pred chhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHH
Q 003770 114 PKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMA 193 (796)
Q Consensus 114 ~~~l~~~~~~~~~ia~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ 193 (796)
++.+|+.++..+..++.++++|+++++++++.++. + +..++.+|+++|.||++++.++++|+|+++++.||++
T Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~ 150 (558)
T PRK10669 78 LKDLMAVKSIAIPGAIAQIAVATLLGMALSAVLGW------S-LMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIA 150 (558)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCC------C-HHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHH
Confidence 99999998888777888888998888877666542 1 2567889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC---CCCCh-----hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCcchHHHH
Q 003770 194 MSAAAVNDVAAWILLALAVALSGS---GQSSL-----VPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPVEETYVC 265 (796)
Q Consensus 194 ls~a~i~D~~~~~ll~i~~~~~~~---~~~~~-----~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~ 265 (796)
+++++++|+.+|+++.+...+... +.... ...|.++..++++++..++.|++..|+.++.++.+ .+|.+..
T Consensus 151 l~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~e~~~l 229 (558)
T PRK10669 151 IGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATG-SRELFTL 229 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHHHH
Confidence 999999999999988876554321 11111 12344455666777778888999999999987654 5788888
Q ss_pred HHHHHHHHHHHH-HHHhchhHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhHHHH
Q 003770 266 ATLAAVLAAGFI-TDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLL 344 (796)
Q Consensus 266 ~~l~~~l~~~~~-ae~~g~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~ 344 (796)
.++++++++++. ++.+|+|+++|||++|+++|+ .+.++++.+...++ .++|+|+||+++|+++|+..+.+ .+...
T Consensus 230 ~~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~-~~~~~~~~~~~~~~-~~~f~plFFv~~G~~~d~~~l~~--~~~~~ 305 (558)
T PRK10669 230 SVLALALGIAFGAVELFDVSFALGAFFAGMVLNE-SELSHRAAHDTLPL-RDAFAVLFFVSVGMLFDPMILIQ--QPLAV 305 (558)
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhC-ChhHHHHHHHHhhH-HHHHHHHHHHHhhhhcCHHHHHH--HHHHH
Confidence 888888887764 699999999999999999995 67888888777776 48899999999999999987763 23334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHHhHHHHHH
Q 003770 345 ALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVM 424 (796)
Q Consensus 345 ~~i~~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~~~lvl~~lv~t~i~~pl~~ 424 (796)
+.++++.+++|++++++.++++|+++|+++.+|++|++||+++++++..+.+.|+++++.|+.++++++++++++|.+.+
T Consensus 306 ~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~ 385 (558)
T PRK10669 306 LATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFT 385 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667789999999999999999999999999999999999999999999999999999999998888877777666666
Q ss_pred HHhhh
Q 003770 425 AVYKP 429 (796)
Q Consensus 425 ~l~~~ 429 (796)
+..+.
T Consensus 386 ~~~~~ 390 (558)
T PRK10669 386 LLERY 390 (558)
T ss_pred HhhHH
Confidence 65443
No 5
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=5.1e-45 Score=425.16 Aligned_cols=370 Identities=22% Similarity=0.379 Sum_probs=307.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhcc
Q 003770 33 AILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLEL 112 (796)
Q Consensus 33 ~l~~i~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle~ 112 (796)
++.++.+++.++.+...+++|+|+|+++||+++|+++||+++|.+. ..+.+..++++|++++||.+|+|+
T Consensus 6 ~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~----------~~~~i~~laelGvv~LLF~iGLel 75 (601)
T PRK03659 6 LLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFIS----------DVDEILHFSELGVVFLMFIIGLEL 75 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCC----------cHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5678888999999999999999999999999999999999999764 234578999999999999999999
Q ss_pred CchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHH
Q 003770 113 DPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRM 192 (796)
Q Consensus 113 d~~~l~~~~~~~~~ia~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l 192 (796)
|++.+|+.+|+++.+|..++++|+++++.+.++++. + +..++++|++++.||++++.++|+|+|+++++.||+
T Consensus 76 ~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~~g~----~---~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~ 148 (601)
T PRK03659 76 NPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLMLTDF----S---WQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQL 148 (601)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----C---HHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHH
Confidence 999999999999999999999998777665554432 1 257888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003770 193 AMSAAAVNDVAAWILLALAVALSGSGQSSLVPV---WVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPVEETYVCATLA 269 (796)
Q Consensus 193 ~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~ 269 (796)
+++..+++|+.+++++++...+........... +.++..++++++..++.+|+++|+.+. +.+|.+...+++
T Consensus 149 ~l~vll~~Di~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~l~ 223 (601)
T PRK03659 149 GFSVLLFQDLAVIPALALVPLLAGSADEHFDWMKIGMKVLAFAGMLIGGRYLLRPLFRFIAAS-----GVREVFTAAALL 223 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCchHHHHHHHH
Confidence 999999999999999987765554322211111 111111222222334455555554332 356888889999
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhHHHHHHHHH
Q 003770 270 AVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVIL 349 (796)
Q Consensus 270 ~~l~~~~~ae~~g~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~i~~ 349 (796)
++++++++++.+|+|+++|||++|+++++ .++++++.++++++. ++|+|+||+++|+++|+..+.+ .|..++.+++
T Consensus 224 ~vl~~a~l~~~~Gls~~LGAFlaGl~l~~-s~~~~~l~~~i~pf~-~lll~lFFi~vGm~id~~~l~~--~~~~il~~~~ 299 (601)
T PRK03659 224 LVLGSALFMDALGLSMALGTFIAGVLLAE-SEYRHELEIAIEPFK-GLLLGLFFISVGMALNLGVLYT--HLLWVLISVV 299 (601)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHhcC-CchHHHHHHHHHHHH-HHHHHHHHHHHhhhccHHHHHH--hHHHHHHHHH
Confidence 99999999999999999999999999995 789999999999995 9999999999999999987764 3445566667
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 003770 350 TACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKP 429 (796)
Q Consensus 350 ~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~~~lvl~~lv~t~i~~pl~~~l~~~ 429 (796)
+.+++|++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.+++++ +.|++.+|++...++|
T Consensus 300 ~~l~~K~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v-~ls~~~tP~l~~~~~~ 378 (601)
T PRK03659 300 VLVAVKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVV-TLSMMTTPLLMKLIDK 378 (601)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHhHH
Confidence 788999999999999999999999999999999999999999999999999999999996655 4566778888877766
No 6
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.1e-44 Score=395.74 Aligned_cols=377 Identities=28% Similarity=0.523 Sum_probs=319.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 003770 32 LAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLE 111 (796)
Q Consensus 32 ~~l~~i~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle 111 (796)
..+.++.++++++.+.+.++||+|+|+++||+++|+++||.+++.. .+..+.++.++++|++++||.+|+|
T Consensus 6 ~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~---------~~~~~~i~~laelGvi~LlF~~GLE 76 (397)
T COG0475 6 LILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLI---------IESSEIIELLAELGVVFLLFLIGLE 76 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCccccccc---------CCchHHHHHHHHHhHHHHHHHHHHC
Confidence 4688999999999999999999999999999999999999554433 3467889999999999999999999
Q ss_pred cCchhHHhcchh-HHHHHHHHHHHHHHHHHHHHHH-HHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCChh
Q 003770 112 LDPKSLRQTGKK-ALGIAIAGISLPFALGIGSSFL-LRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADV 189 (796)
Q Consensus 112 ~d~~~l~~~~~~-~~~ia~~~~~i~~~~~~~~~~~-l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~ 189 (796)
+|++.+||++|+ +...+..++.+|+.++....+. ++. + +..++++|.+++.||.++++++++|+|.++++.
T Consensus 77 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~----~---~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~ 149 (397)
T COG0475 77 FDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGL----S---LIAALFLGAALALSSTAIVLKILMELGLLKTRE 149 (397)
T ss_pred cCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhcc----C---hHHHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 999999999999 8888888888888888644443 322 1 256999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChh-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCcchHHHHHHH
Q 003770 190 GRMAMSAAAVNDVAAWILLALAVALSGSGQSSLV-PVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPVEETYVCATL 268 (796)
Q Consensus 190 g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l 268 (796)
|++++++++++|+.++++++++..+..++..... .++......++.++..+..+++.+|+.|+..+. +.+|..+..++
T Consensus 150 g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~-~~~e~~~~~~l 228 (397)
T COG0475 150 GQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKT-ESSELFILFVL 228 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHH
Confidence 9999999999999999999999888765433222 234444555555555555677777777776433 35788999999
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCChh-HHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhHHHHHHH
Q 003770 269 AAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFA-NALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALV 347 (796)
Q Consensus 269 ~~~l~~~~~ae~~g~~~~lgafvaGl~l~~~~~~~-~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~i 347 (796)
++++.+++++|.+|+|+++|||++|+++++ .+.+ ++++++++++.+++|+|+||+.+|+++|+..+.. .+..+..+
T Consensus 229 ~i~l~~a~l~e~~gls~ilGAFlaGl~ls~-~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~--~~~~~l~~ 305 (397)
T COG0475 229 LLVLGAAYLAELLGLSMILGAFLAGLLLSE-SEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLE--NLLLILLL 305 (397)
T ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHHhcc-cccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhc--cHHHHHHH
Confidence 999999999999999999999999999995 5555 7999999999988999999999999999998875 34446777
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHHhHHHHHHHHh
Q 003770 348 ILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVY 427 (796)
Q Consensus 348 ~~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~~~lvl~~lv~t~i~~pl~~~l~ 427 (796)
+.+..++|.+++++.++..|.++|++...|+.+.++|+++++.++.+.+ +.++++.++..+.+++++|.+.+++...++
T Consensus 306 ~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~~~~~ 384 (397)
T COG0475 306 VALAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLTPILL 384 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999999999999998887 678888888887777777766666666665
Q ss_pred hh
Q 003770 428 KP 429 (796)
Q Consensus 428 ~~ 429 (796)
++
T Consensus 385 ~~ 386 (397)
T COG0475 385 KR 386 (397)
T ss_pred HH
Confidence 44
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=1.5e-39 Score=378.36 Aligned_cols=379 Identities=18% Similarity=0.194 Sum_probs=311.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhh
Q 003770 31 PLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGL 110 (796)
Q Consensus 31 ~~~l~~i~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gl 110 (796)
..++++++++++++.+++.+++|+|+|.+++++++|+++||+++|.+. .++.+..+.++++|++++||..|+
T Consensus 5 ~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~--------~~~~~~~~~i~~l~L~~iLF~~Gl 76 (562)
T PRK05326 5 NSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQ--------FDNYPLAYLVGNLALAVILFDGGL 76 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcc--------cCcHHHHHHHHHHHHHHHHHcCcc
Confidence 457889999999999999999999999999999999999999998653 124567899999999999999999
Q ss_pred ccCchhHHhcchhHHHHHHHHHHHHHHHHHHHH-HHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCc-cCCh
Q 003770 111 ELDPKSLRQTGKKALGIAIAGISLPFALGIGSS-FLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKL-LTAD 188 (796)
Q Consensus 111 e~d~~~l~~~~~~~~~ia~~~~~i~~~~~~~~~-~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l-l~s~ 188 (796)
|+|++.+|+++++++.++..++++|++++...+ ++++. .+..++++|+++++||++++.++++|.|+ ++++
T Consensus 77 ~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~g~-------~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~ 149 (562)
T PRK05326 77 RTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLLGL-------DWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKER 149 (562)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CHHHHHHHhhhhccCchHHHHHHHhccCCCcchh
Confidence 999999999999999999999999987754444 33322 23678999999999999999999999995 7999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCcchHHHHH
Q 003770 189 VGRMAMSAAAVNDVAAWILLALAVALSGSGQSS--LVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPVEETYVCA 266 (796)
Q Consensus 189 ~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~ 266 (796)
+++++.++|.+||.++++++.+...+...+... ...++.++..+++.++.+++.++++.|+.+|... ..++.+..+
T Consensus 150 v~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~--~~~~~~~i~ 227 (562)
T PRK05326 150 VASTLEIESGSNDPMAVFLTITLIELITGGETGLSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIAL--PAEGLYPIL 227 (562)
T ss_pred HHhHhhhhhhcccHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--chhhHHHHH
Confidence 999999999999999999888777665443321 2223344555666677778888999999988732 134567888
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhHHHHHH
Q 003770 267 TLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLAL 346 (796)
Q Consensus 267 ~l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~ 346 (796)
++++++++++++|.+|.|+++|+|++|+++++.++..+...+++.+...+++.|+||+++|+.+|+..+.+ ..+...++
T Consensus 228 ~l~~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~-~~~~~l~i 306 (562)
T PRK05326 228 VLAGALLIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLD-IALPALLL 306 (562)
T ss_pred HHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence 89999999999999999999999999999997665555556666666668999999999999999987763 23333333
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCCh-hHHHHHHHHHHHHHHhHHHHHHH
Q 003770 347 VILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLND-QVFAIMILMAVVTTFMTTPLVMA 425 (796)
Q Consensus 347 i~~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~-~~~~~lvl~~lv~t~i~~pl~~~ 425 (796)
.+++.+++|++++++..+.+++++||+.++|| .++||.++++++..+...++.+. ..|+++.+++++++.+.++.+..
T Consensus 307 ~~~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~-~g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~ 385 (562)
T PRK05326 307 ALFLILVARPLAVFLSLLPFRFNLREKLFISW-VGLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPW 385 (562)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCHhhhheeee-ecchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHH
Confidence 44567889999999999999999999999999 58999999999999999998864 56677767777777776666666
Q ss_pred Hhh
Q 003770 426 VYK 428 (796)
Q Consensus 426 l~~ 428 (796)
+.+
T Consensus 386 ~a~ 388 (562)
T PRK05326 386 AAR 388 (562)
T ss_pred HHH
Confidence 543
No 8
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=2.4e-39 Score=361.24 Aligned_cols=373 Identities=31% Similarity=0.569 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhcccCCChhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHH
Q 003770 39 LVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLR 118 (796)
Q Consensus 39 lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~ 118 (796)
++++.+.+.+.++||+++|.+++|+++|+++||.+++..+ |+ ...++.++++|+.++||.+|+|+|.+.+|
T Consensus 3 lli~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~-------~~--~~~~~~l~~i~l~~llF~~G~~~d~~~l~ 73 (380)
T PF00999_consen 3 LLILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLE-------PD--NPSFELLAEIGLAFLLFEAGLELDIKELR 73 (380)
T ss_dssp ------------------------------------------------------S-SSHHHHS--SSHHHHTTGGGG---
T ss_pred EEeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhcc-------ch--hhHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3445566667789999999999999999999999888543 11 35688999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHHHHH-HHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHH
Q 003770 119 QTGKKALGIAIAGISLPFAL-GIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAA 197 (796)
Q Consensus 119 ~~~~~~~~ia~~~~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a 197 (796)
|++|+++.+++.++.+|+.+ ++.+++++. .. +++ +..++++|.+++.||++++.++++|.+..+++.++++++++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~-~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~ 149 (380)
T PF00999_consen 74 RNWRRALALGLVGFLLPFILVGFLLSFFLF-IL--GLS-WAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSES 149 (380)
T ss_dssp --------------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTT
T ss_pred cccccccccccceeeehhhHHHHHHHHhhc-cc--hhh-hHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhc
Confidence 99999999999999999888 766664321 01 222 26789999999999999999999888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCC-CCcchHHHHHHHHHHHHHHH
Q 003770 198 AVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEG-EPVEETYVCATLAAVLAAGF 276 (796)
Q Consensus 198 ~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~-~~~~e~~~~~~l~~~l~~~~ 276 (796)
++||+++++++.+.......+ .....+.....+...+..+.+.+....|+.++..+. ++.++.+..+++++++.+++
T Consensus 150 ~i~d~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 227 (380)
T PF00999_consen 150 VINDIIAIILLSILISLAQAS--GQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRASPSSEIFILLVLALILLLYG 227 (380)
T ss_dssp TTTTTTTTTTT---------------------------------------------------------------------
T ss_pred hhhccchhhhhhhhhhhhccc--ccccccchhcchhhhhhhheeeecccchHHHHhhhhccccchhhHHHHHHHHhhhcc
Confidence 999999999998877765211 111222222222233333444444445554444332 24678889999999999999
Q ss_pred HHHHhchhHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhh-hhhhHHHHHHHHHHHHHHH
Q 003770 277 ITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQ-GLQSWGLLALVILTACLGK 355 (796)
Q Consensus 277 ~ae~~g~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~-~~~~~~~~~~i~~~~~~~K 355 (796)
++|.+|.|+++|+|++|++++ +.+.++++.++++++.++++.|+||+++|+++|++.+. +...|.....+++..+++|
T Consensus 228 ~a~~~g~s~~l~af~~Gl~~~-~~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k 306 (380)
T PF00999_consen 228 LAEILGLSGILGAFIAGLILS-NSPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGK 306 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccceeeeeehccc-cccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhh
Confidence 999999999999999999999 67788889999999999999999999999999988774 2245555666677777999
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHHhHHHHHHHHh
Q 003770 356 IVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVY 427 (796)
Q Consensus 356 ~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~~~lvl~~lv~t~i~~pl~~~l~ 427 (796)
++++++.+++.|.++||+..+|+.+++||+++++++..+.+.|.++++.+++++.++++++.+.++.++.+.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l~ 378 (380)
T PF00999_consen 307 FIGVYLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPLL 378 (380)
T ss_dssp ----------------HHHHTTTTSS--HHHHHHHHHHHHH-------------------------------
T ss_pred hceeehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999998888887777776666543
No 9
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=1.2e-34 Score=308.20 Aligned_cols=270 Identities=27% Similarity=0.464 Sum_probs=230.3
Q ss_pred HHHHHHHHHhcccCCChhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhcc
Q 003770 42 LLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTG 121 (796)
Q Consensus 42 ~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~ 121 (796)
+++.+.+.++||+|+|++++++++|+++||+++|.++ ..+.++.++++|+++++|.+|+|+|++.+||++
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~----------~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~ 71 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLIS----------NVEGVNHLAEFGVILLMFLIGLELDLERLWKLR 71 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCC----------ChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4577889999999999999999999999999988754 235799999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHH
Q 003770 122 KKALGIAIAGISLP-FALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVN 200 (796)
Q Consensus 122 ~~~~~ia~~~~~i~-~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~ 200 (796)
|++..++..++++| +.+++.++++++.. +..++++|++++.||++++.++++|+|+.+++.|+++++++++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~ 144 (273)
T TIGR00932 72 KAAFGVGVLQVLVPGVLLGLLLGHLLGLA-------LGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQ 144 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHH
Confidence 99999999999999 67777666655421 26789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHH
Q 003770 201 DVAAWILLALAVALSGSGQSS-LVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPVEETYVCATLAAVLAAGFITD 279 (796)
Q Consensus 201 D~~~~~ll~i~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae 279 (796)
|+.+++++.+......+.... ....+.+...++..++.+++.++...|+.++.++.+ ..|.+...++.+++..++++|
T Consensus 145 D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~la~ 223 (273)
T TIGR00932 145 DIAVVPLLALLPLLATSASTEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELR-PSELFTAGSLLLMFGSAYFAD 223 (273)
T ss_pred HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHHHH
Confidence 999999999887765432211 122333444444555666778888999998877644 357888899999999999999
Q ss_pred HhchhHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 003770 280 AIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTN 331 (796)
Q Consensus 280 ~~g~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~d 331 (796)
.+|.|+++|||++|+++++ .+.++++.++++.+. ++|.|+||+++|+++|
T Consensus 224 ~~g~s~~lgaf~aGl~~~~-~~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 224 LLGLSMALGAFLAGVVLSE-SEYRHKLESDLEPIG-GVLLPLFFISVGMSVD 273 (273)
T ss_pred HhCCcHHHHHHHHHHHHcC-CchHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence 9999999999999999996 556788999999999 9999999999999987
No 10
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-32 Score=274.70 Aligned_cols=381 Identities=27% Similarity=0.376 Sum_probs=307.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHH
Q 003770 28 FALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFL 107 (796)
Q Consensus 28 ~~l~~~l~~i~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~ 107 (796)
++.|+ +-.+..-+..+++++.+..|+|+|+.+||+++|++.||.--|... +......++++|++++||-
T Consensus 3 h~tpl-i~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFva----------d~~La~~LAelGViLLmFg 71 (408)
T COG4651 3 HDTPL-ITTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVA----------DQTLAPELAELGVILLMFG 71 (408)
T ss_pred CCchH-HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCccc----------chhHHHHHHHhhHHHHHHh
Confidence 33444 334455567788999999999999999999999999997766543 3445668999999999999
Q ss_pred HhhccCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCC
Q 003770 108 VGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTA 187 (796)
Q Consensus 108 ~Gle~d~~~l~~~~~~~~~ia~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s 187 (796)
+|++.+++++...+..++--++.++.+-...+.++.+.++..+ ...+.+|.++|..|..+..|.++|++++++
T Consensus 72 vGLhfslkdLLavk~iAipgAl~qia~at~lg~gL~~~lgws~-------~~glvfGlaLS~aSTVvllraLqEr~lidt 144 (408)
T COG4651 72 VGLHFSLKDLLAVKAIAIPGALAQIALATLLGMGLSSLLGWSF-------GTGIVFGLALSVASTVVLLRALEERQLIDT 144 (408)
T ss_pred cchheeHHHHhhHHHHhcchHHHHHHHHHHHHhHHHHHcCCCc-------ccceeeeehhhhHHHHHHHHHHHHhccccc
Confidence 9999999999987766666666666666667777777765443 346788999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CC----hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCc
Q 003770 188 DVGRMAMSAAAVNDVAAWILLALAVALSGSGQ----SS----LVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPV 259 (796)
Q Consensus 188 ~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~----~~----~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~ 259 (796)
+.||++++--+++|+..++.+....+++..-+ .. ....+.......|+.++.++.|++..|+..+.... ..
T Consensus 145 ~rG~iAiGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~t-Gs 223 (408)
T COG4651 145 QRGRIAIGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAAT-GS 223 (408)
T ss_pred cCceEEEeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-Cc
Confidence 99999999999999999888877766543211 11 11223445778899999999999999999987433 25
Q ss_pred chHHHHHHHHHHHHHHH-HHHHhchhHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhh
Q 003770 260 EETYVCATLAAVLAAGF-ITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGL 338 (796)
Q Consensus 260 ~e~~~~~~l~~~l~~~~-~ae~~g~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~ 338 (796)
+|.+...++++++..++ .++.+|+++.+|||++|++++ ++...++..+..-++. +.|.-+||+.+||..|...+.+
T Consensus 224 rElf~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~-eselshraa~~slpLr-daFaVlFFvsVGmlf~P~~l~~- 300 (408)
T COG4651 224 RELFTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVLA-ESELSHRAAEDSLPLR-DAFAVLFFVSVGMLFDPMILIQ- 300 (408)
T ss_pred HHHHHHHHHHHHHHHhhccceeeccchhHHHHHHHHHhc-chhhhHHHHHhccCHH-HHHHHHHHHHhhhhcCcHHhhc-
Confidence 78888889988888776 667899999999999999998 6778888888777775 7788899999999999877664
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHHh
Q 003770 339 QSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFM 418 (796)
Q Consensus 339 ~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~~~lvl~~lv~t~i 418 (796)
+.+. +...+++...+|-+..+...+.+|.|.|.++.++..+.+.|+++++++..+.+.++++ +...-++++.-+.+++
T Consensus 301 ~pl~-vlatllii~~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp-~~gr~LvlagailsIl 378 (408)
T COG4651 301 QPLA-VLATLLIILFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLP-EAGRDLVLAGAILSIL 378 (408)
T ss_pred chHH-HHHHHHHHHhhhHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCc-HHHHHHHHHHHHHHHH
Confidence 3444 3445567788999999999999999999999999999999999999999999999998 5555555777777888
Q ss_pred HHHHHHHHhhhhhh
Q 003770 419 TTPLVMAVYKPARR 432 (796)
Q Consensus 419 ~~pl~~~l~~~~~~ 432 (796)
..|+.....++.++
T Consensus 379 ~nPllf~~~dr~~~ 392 (408)
T COG4651 379 LNPLLFALLDRYQR 392 (408)
T ss_pred HhHHHHHHHHHHhh
Confidence 89988776655443
No 11
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.97 E-value=5.6e-28 Score=277.59 Aligned_cols=368 Identities=15% Similarity=0.201 Sum_probs=267.2
Q ss_pred cccCCCCCCccHHHHHHHHHHHHHHHHHHHHHhc-ccCCChhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHH
Q 003770 19 VFQGDSPLDFALPLAILQICLVILLTRGLAFILR-PLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLA 97 (796)
Q Consensus 19 ~~~~~~pl~~~l~~~l~~i~lil~~~~~~~~ll~-~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~ 97 (796)
.|+.-++-+.++.+ ..++..+++..++..+++ |+.+|..+.++++|+++||.++|.+.+.. +.......++ +.
T Consensus 2 ~w~~l~~~~~~l~~--~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~---~g~~d~i~le-It 75 (810)
T TIGR00844 2 IWEQLEVTKAHVAY--SCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLS---WGNTDSITLE-IS 75 (810)
T ss_pred CcccccccchhhHH--HHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhh---cccchHHHHH-HH
Confidence 36555565555433 333333444444555555 99999999999999999999988765310 0001223444 99
Q ss_pred HHHHHHHHHHHhhccCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHH
Q 003770 98 NLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLAR 177 (796)
Q Consensus 98 ~lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~ 177 (796)
++++++.+|..|++++.+.++++|+..+.+++.++.+++++++++++++...+ .+..++++|+++++|++.....
T Consensus 76 eIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL-----~~~~ALLLGAILAPTDPVLAss 150 (810)
T TIGR00844 76 RILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGL-----NFPASLLMGACITATDPVLAQS 150 (810)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHHhhhcCCcHHHHHH
Confidence 99999999999999999999999999999999999999888887777663222 2368999999999999877777
Q ss_pred HHH---hcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCChh---HHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003770 178 ILA---ELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSG--QSSLV---PVWVFLSGCVFVICLTLFVPPTFKWM 249 (796)
Q Consensus 178 iL~---el~ll~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~--~~~~~---~~~~~~~~i~~~~~~~~v~~~~~~~i 249 (796)
+++ ..+ ++.++..++.+++.+||.++++++.+.+.+.... +.... ..+.++..+++.++++++++.+..|+
T Consensus 151 V~kg~~~~r-vP~rLR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~L 229 (810)
T TIGR00844 151 VVSGTFAQK-VPGHLRNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKA 229 (810)
T ss_pred HHhcccccc-CChHHHhHHhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776 234 6889999999999999999998887666544321 11111 12233444445555556666666666
Q ss_pred HHHhcCCC-CcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCChhHH-HHHHHHHHHHHHHHHHHHhhhh
Q 003770 250 ARQCHEGE-PVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANA-LVEKVEDLVSGIFLPLYFVSSG 327 (796)
Q Consensus 250 ~~~~~~~~-~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~~~~~~~~-l~~kl~~~~~~~~~PlfF~~~G 327 (796)
.++..+.. ...+.++.+.++++++++.+++.+|.++++++|++|+++.+...+... -...+......++..++|+++|
T Consensus 230 l~~l~rr~~i~~esfla~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLG 309 (810)
T TIGR00844 230 IRFAEGKNIIDRESFLAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLG 309 (810)
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 65543221 134566777888888899999999999999999999999975443322 2334666677788999999999
Q ss_pred ccccchhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHhhhhHHHHHHHHHhhhccCC
Q 003770 328 LKTNIATIQG----LQSWGLLALVILTACLGKIVGTFVVSLSF--KVPLREALALGILMNTKGLVELIVLNIGKDRKV 399 (796)
Q Consensus 328 ~~~dl~~l~~----~~~~~~~~~i~~~~~~~K~~~~~l~~~~~--~~~~~e~~~lgl~l~~kG~~~l~l~~~~~~~~~ 399 (796)
+.+....+.. ...|..+++.+++.++.|+.++++...+. ..+|+|++++|| .++||..++.++.++++.+.
T Consensus 310 a~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 310 SILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred HhhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence 9998766532 13466566667777888988888764443 468999999999 89999999999998877654
No 12
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.97 E-value=1.2e-27 Score=274.81 Aligned_cols=367 Identities=16% Similarity=0.142 Sum_probs=254.8
Q ss_pred HHHHHHHHHHHHHhcccCCChhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhH
Q 003770 38 CLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSL 117 (796)
Q Consensus 38 ~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l 117 (796)
..+++++.....+++|+++|.+++++++|+++||..++... +. + -+.+..+++.+++|..|+++|++.+
T Consensus 4 ~~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~-------~~-~---~~~~~~~~Lp~lLF~~g~~~~~~~l 72 (525)
T TIGR00831 4 IELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEV-------PL-D---REIVLFLFLPPLLFEAAMNTDLREL 72 (525)
T ss_pred HHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCC-------CC-C---HHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 34455566677899999999999999999999986443211 11 1 1344568999999999999999999
Q ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHH
Q 003770 118 RQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAA 197 (796)
Q Consensus 118 ~~~~~~~~~ia~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a 197 (796)
|++++.++.+++.++++|++++....+++. +. ++..++++|+++|+||++++.+++++.+ +++++.+++.++|
T Consensus 73 ~~~~~~i~~la~~~vlit~~~v~~~~~~~~-----~l-~~~~alllGails~TDpvav~~il~~~~-~p~rl~~il~gES 145 (525)
T TIGR00831 73 RENFRPIALIAFLLVVVTTVVVGFSLNWIL-----GI-PLALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEGES 145 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cc-cHHHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhh
Confidence 999999999999999999887665555432 11 2378999999999999999999999988 6899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcC-CC-CChhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHH
Q 003770 198 AVNDVAAWILLALAVALSGS-GQ-SSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPVEETYVCATLAAVLAAG 275 (796)
Q Consensus 198 ~i~D~~~~~ll~i~~~~~~~-~~-~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~ 275 (796)
++||..+++++.++..+..+ +. +.....+.++..++..++++++++.+..|+.++..+ .......++++++++++
T Consensus 146 llND~~alvlf~~~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~---~~~~~~~l~l~~~~~~y 222 (525)
T TIGR00831 146 LLNDGAALVVFAIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKID---DPLVEIALTILAPFAGF 222 (525)
T ss_pred hhcchHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHH
Confidence 99999999999988876653 21 112223333333344455555666666666655332 23456788899999999
Q ss_pred HHHHHhchhHHHHHHHHHhhcCCCCCh------hHHHHHHHHHHHHHHHHHHHHhhhhccccchhh--hh-hh------h
Q 003770 276 FITDAIGIHAMFGAFVVGVLVPKEGPF------ANALVEKVEDLVSGIFLPLYFVSSGLKTNIATI--QG-LQ------S 340 (796)
Q Consensus 276 ~~ae~~g~~~~lgafvaGl~l~~~~~~------~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l--~~-~~------~ 340 (796)
+++|.+|.|+++++|++|+++++..+. .+...+.++.....++.+++|+++|++++.... .. .. .
T Consensus 223 ~lAe~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~ 302 (525)
T TIGR00831 223 LLAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVI 302 (525)
T ss_pred HHHHHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 999999999999999999999974332 122344566677789999999999999874211 10 00 0
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHH--Hh-----cCCChHHHHHHHHHhhhhHHHHHHHHHhhhc---cC--C-----C
Q 003770 341 WGL---LALVILTACLGKIVGTFVVS--LS-----FKVPLREALALGILMNTKGLVELIVLNIGKD---RK--V-----L 400 (796)
Q Consensus 341 ~~~---~~~i~~~~~~~K~~~~~l~~--~~-----~~~~~~e~~~lgl~l~~kG~~~l~l~~~~~~---~~--~-----i 400 (796)
+.. .+++.......|++.++... ++ .+++|||...++| .++||.++++++..... .+ . +
T Consensus 303 ~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al~~p~~~~~g~~~p~r~~i 381 (525)
T TIGR00831 303 LALFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALALSFPNQLLSGMAFPARYEL 381 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHHHccccccCCCCCchHHHH
Confidence 100 11222233445554433321 11 2478999999999 79999999998753321 11 1 2
Q ss_pred ChhHHHHHHHHHHHHHHhHHHHHHHH
Q 003770 401 NDQVFAIMILMAVVTTFMTTPLVMAV 426 (796)
Q Consensus 401 ~~~~~~~lvl~~lv~t~i~~pl~~~l 426 (796)
-.-++.+++++.++.+...+|+++++
T Consensus 382 ~~~~~~vVl~TllvqG~tlp~l~r~l 407 (525)
T TIGR00831 382 VFLAAGVILFSLLVQGISLPIFVKRK 407 (525)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhc
Confidence 22234445455555555556666554
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.95 E-value=6.9e-25 Score=245.13 Aligned_cols=380 Identities=18% Similarity=0.207 Sum_probs=287.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 003770 32 LAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLE 111 (796)
Q Consensus 32 ~~l~~i~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle 111 (796)
..++++.+++....+...+.+|++.|.+..+++.|++.||.+++...+ +....-+.+..+++..++|..|+|
T Consensus 6 ~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~--------~~~~~~el~~~l~l~ilLf~~g~~ 77 (429)
T COG0025 6 MLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISP--------DLELDPELFLVLFLAILLFAGGLE 77 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccc--------cccCChHHHHHHHHHHHHHHhHhc
Confidence 457788888899999999999999999999999999999988877652 111223444499999999999999
Q ss_pred cCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHH
Q 003770 112 LDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGR 191 (796)
Q Consensus 112 ~d~~~l~~~~~~~~~ia~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~ 191 (796)
+|.+.+||+++.+..+++.+++++.+......+++.+ +. ++..++.+|+++|+|++.++.+++++.+ .+.++.+
T Consensus 78 l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~----~i-~~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~ 151 (429)
T COG0025 78 LDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLP----GI-PLAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRT 151 (429)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC----Ch-hHHHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHH
Confidence 9999999999999999999999997665555555532 22 3378999999999999999999999977 7999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCC-CCcchHHHHHHH
Q 003770 192 MAMSAAAVNDVAAWILLALAVALSGSGQSS--LVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEG-EPVEETYVCATL 268 (796)
Q Consensus 192 l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~-~~~~e~~~~~~l 268 (796)
++.++|++||..+++++.+...+..++... ......++..++..+.++++.+.+..|+.++..+. .........+.+
T Consensus 152 iL~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L 231 (429)
T COG0025 152 ILEGESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTL 231 (429)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHH
Confidence 999999999999999999988877643221 22333334444444455555555555665554321 223456788999
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHHhhcC-----CCCChh-HHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhHH
Q 003770 269 AAVLAAGFITDAIGIHAMFGAFVVGVLVP-----KEGPFA-NALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWG 342 (796)
Q Consensus 269 ~~~l~~~~~ae~~g~~~~lgafvaGl~l~-----~~~~~~-~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~ 342 (796)
...+..+.++|.+|.|++++++++|+... +..+.. +...+.++.....++.-+.|++.|++++...... ..+.
T Consensus 232 ~~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~-~~~~ 310 (429)
T COG0025 232 LLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLA-LGLL 310 (429)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-hhHH
Confidence 99999999999999999999999998774 122222 3444557777778889999999999999887764 2355
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC------CChHHHHHHHHHhhhhHHHHHHHHHhhhcc-C-----CCChhHHHHHHH
Q 003770 343 LLALVILTACLGKIVGTFVVSLSFK------VPLREALALGILMNTKGLVELIVLNIGKDR-K-----VLNDQVFAIMIL 410 (796)
Q Consensus 343 ~~~~i~~~~~~~K~~~~~l~~~~~~------~~~~e~~~lgl~l~~kG~~~l~l~~~~~~~-~-----~i~~~~~~~lvl 410 (796)
..++..+..+++|++++++..+..+ .+++|+.+++| -++||.++++++...... . .+-.-.+.+++.
T Consensus 311 ~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w-~G~RG~vsla~al~~p~~~~~~~~~~i~~i~~~vIl~ 389 (429)
T COG0025 311 GLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSW-AGPRGVVSLALALLIPLELPGPARELILFIVFLVILF 389 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhh-cccccHHHHHHHHHchhhccchhhhHHHHHHHHHHHH
Confidence 5677788899999999999988743 79999999999 799999999998765422 1 222223444444
Q ss_pred HHHHHHHhHHHHHHHHh
Q 003770 411 MAVVTTFMTTPLVMAVY 427 (796)
Q Consensus 411 ~~lv~t~i~~pl~~~l~ 427 (796)
++++.+...+|+.++..
T Consensus 390 Sl~v~g~t~~~l~~~~~ 406 (429)
T COG0025 390 SLLVQGLTLPPLAKKLE 406 (429)
T ss_pred HHHHHhhhHHHHHHHhc
Confidence 44444444555555543
No 14
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.94 E-value=5.5e-24 Score=244.23 Aligned_cols=379 Identities=11% Similarity=0.128 Sum_probs=261.6
Q ss_pred HHHHHHHHHHHHHHHHHh-ccc-CCChhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 003770 34 ILQICLVILLTRGLAFIL-RPL-RQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLE 111 (796)
Q Consensus 34 l~~i~lil~~~~~~~~ll-~~l-~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle 111 (796)
+.-+.++..++.+...+. ++. ++|..+..++.|+++|+...+... .+. ..-.-+.+-.+.+..++|..|++
T Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~------~~~-~~l~~~lf~~~~LPpIlFe~g~~ 83 (559)
T TIGR00840 11 FILWILLASLAKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPH------IDP-PTLDSSYFFLYLLPPIVLDAGYF 83 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCC------Ccc-CCcCHHHHHHHHHHHHHHHHHhc
Confidence 333334444444444444 344 599999999999999985432211 000 01113566677888999999999
Q ss_pred cCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhc---cCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCCh
Q 003770 112 LDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETIS---KGVDSTSFLVFMGVALSITAFPVLARILAELKLLTAD 188 (796)
Q Consensus 112 ~d~~~l~~~~~~~~~ia~~~~~i~~~~~~~~~~~l~~~~~---~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~ 188 (796)
+|.+.++++.+.++.+|+.+++++.++.....+++..... .+. .+..++.+|+++|+|+|..+..++++.+ .+.+
T Consensus 84 l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l-~~~~allfGAiiSaTDPVAVlai~~~~~-v~~~ 161 (559)
T TIGR00840 84 MPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDI-GLLDNLLFGSLISAVDPVAVLAVFEEYH-VNEK 161 (559)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCC-CHHHHHHHhHHhcCCchHHHHHHHHhcC-CCcc
Confidence 9999999999999999999999987655544444322111 112 3478999999999999999999999999 7999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--Chh----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCcchH
Q 003770 189 VGRMAMSAAAVNDVAAWILLALAVALSGSGQS--SLV----PVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPVEET 262 (796)
Q Consensus 189 ~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~--~~~----~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~ 262 (796)
+.+++.++|++||.++++++.++..+...+.. ... ....++...+..++++++++.+..++.|+.... +..
T Consensus 162 L~~ll~gESllNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~~---~~~ 238 (559)
T TIGR00840 162 LYIIIFGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHI---RQI 238 (559)
T ss_pred hhhheehhhhhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---chh
Confidence 99999999999999999999888876542211 111 111111112224555666677777777775432 245
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCC-----CChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhh
Q 003770 263 YVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKE-----GPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQG 337 (796)
Q Consensus 263 ~~~~~l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~~-----~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~ 337 (796)
...+++++++++++++|.+|.|++++++++|+++.+. .+..+.-.+.++.....++..+.|+++|+.+.... .
T Consensus 239 e~~l~l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~-~- 316 (559)
T TIGR00840 239 EPLFVFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTEN-H- 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-h-
Confidence 6778889999999999999999999999999999642 22223334456666667888999999999763221 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh------cCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCChhHH-----H
Q 003770 338 LQSWGLLALVILTACLGKIVGTFVVSLS------FKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVF-----A 406 (796)
Q Consensus 338 ~~~~~~~~~i~~~~~~~K~~~~~l~~~~------~~~~~~e~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~-----~ 406 (796)
...|...++.+++.++.|+++++..++. .+++++|.+.++| .+.||.++++++....+.+.-..+.+ .
T Consensus 317 ~~~~~~i~~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l~~~~~~~~~~i~~~t~~ 395 (559)
T TIGR00840 317 EWNWAFVVATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLLDEKIFPYKFLFVTTTLV 395 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhCCCCCcchHHHHHHHHHe
Confidence 1234444455566778999998877654 3579999999999 79999999998876544333333333 3
Q ss_pred HHHHHHHHHHHhHHHHHHHHh
Q 003770 407 IMILMAVVTTFMTTPLVMAVY 427 (796)
Q Consensus 407 ~lvl~~lv~t~i~~pl~~~l~ 427 (796)
++++++++....++|+++++.
T Consensus 396 VVl~TvlvqG~T~~pl~~~L~ 416 (559)
T TIGR00840 396 VVFFTVIFQGGTIKPLVEVLK 416 (559)
T ss_pred eehHHHHHHHhhHHHHHHHhC
Confidence 333444454555677777764
No 15
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.92 E-value=5.4e-23 Score=215.83 Aligned_cols=352 Identities=18% Similarity=0.190 Sum_probs=287.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 003770 32 LAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLE 111 (796)
Q Consensus 32 ~~l~~i~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle 111 (796)
.+++.-.+++.++.+.+.+..|+|.|..+-.+..|++.|--++|.+. -++.+....++++++++++|-.|+.
T Consensus 7 ~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~--------fdNy~~Ay~vg~lALaiILfdgG~~ 78 (574)
T COG3263 7 LILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIE--------FDNYPFAYMVGNLALAIILFDGGFG 78 (574)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCcccccc--------cCccHHHHHHHHHHHHHHhhcCccC
Confidence 44444557778888899999999999999999999999999999765 2456778899999999999999999
Q ss_pred cCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHH
Q 003770 112 LDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGR 191 (796)
Q Consensus 112 ~d~~~l~~~~~~~~~ia~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~ 191 (796)
++++.+|...++++.++..|++++-.+..+.+.++... .|.+++++|+++.+|+.+.+..+|.+.+ +|.+++.
T Consensus 79 T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l------~wle~~LiGAiVgSTDAAAVF~lL~~~n-l~erv~s 151 (574)
T COG3263 79 TQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLNL------DWLEGLLIGAIVGSTDAAAVFSLLGGKN-LNERVAS 151 (574)
T ss_pred CcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHhhccccHHHHHHHHccCC-hhhhhhh
Confidence 99999999999999999999999866555455444321 2378999999999999999999999888 6999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCh--hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003770 192 MAMSAAAVNDVAAWILLALAVALSGSGQSSL--VPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPVEETYVCATLA 269 (796)
Q Consensus 192 l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~ 269 (796)
+..-+|--||-+++++..-.+.+...+.+.. ..+..++....+.++.++..+.+..|+++|+.- .+..+..++++
T Consensus 152 tLEiESGtNDPmAvfLTitlieli~~get~l~~~~ll~f~~q~glG~l~G~~gg~l~~~~Inr~nL---d~GL~pil~la 228 (574)
T COG3263 152 TLEIESGSNDPMAVFLTITLIELIAGGETNLSWGFLLGFLQQFGLGLLLGLGGGKLLLQLINRINL---DSGLYPILALA 228 (574)
T ss_pred hEEeecCCCCceeeehhHHHHHHHhccccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcc---ccchhHHHHHH
Confidence 9999999999999877655555444432222 223335566778888888899999999999732 35678899999
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHhhcCCCCChhH-HHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhHHHHHHHH
Q 003770 270 AVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFAN-ALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVI 348 (796)
Q Consensus 270 ~~l~~~~~ae~~g~~~~lgafvaGl~l~~~~~~~~-~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~i~ 348 (796)
..++.+.+++.+|.|++++.+++|+++.|.+-..+ .+.+-.+-+ .++..-+.|...|+.+..+++.. ...+.+++.+
T Consensus 229 ~~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~-twlaQI~MFlvLGLLvtPsql~~-iavPailL~l 306 (574)
T COG3263 229 GGLLIFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGL-AWLAQILMFLVLGLLVTPSQLLP-IAIPAILLSL 306 (574)
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccH-HHHHHHHHHHHHHHhcCHhhhhH-hhHHHHHHHH
Confidence 99999999999999999999999999997544433 444445555 48888888999999999988875 4555566677
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCChhH
Q 003770 349 LTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQV 404 (796)
Q Consensus 349 ~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~ 404 (796)
...+++|.+++|+...-+++++||..+++| .+-||.++++++....-.|.-+.+.
T Consensus 307 ~mifvaRP~aV~l~l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~l 361 (574)
T COG3263 307 WMIFVARPLAVFLGLIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENARL 361 (574)
T ss_pred HHHHHHhHHHHHHhhcccccCccchheeeh-hhcccchhhhHhhhHHhcCCccceE
Confidence 788999999999999999999999999999 7999999999998777666555544
No 16
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.3e-18 Score=191.83 Aligned_cols=386 Identities=15% Similarity=0.137 Sum_probs=264.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcccC---CChhHHHHHHHHhcCccccCCchhhh----c-cccCCCcHHHHHHHHHHHHHHH
Q 003770 33 AILQICLVILLTRGLAFILRPLR---QPRVIAEITGGILLGPSALGRSERFL----Q-AVFPPKSQTVLDTLANLGLIFF 104 (796)
Q Consensus 33 ~l~~i~lil~~~~~~~~ll~~l~---~P~iv~~ilaGiilGP~~lg~~~~~~----~-~lfp~~~~~~l~~l~~lgl~~~ 104 (796)
-++-++++++++.+.++++++-| +|.-+.-++.|+++|-.......... + ..|. -+.+-.+-+-.+
T Consensus 36 al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~------~~~ff~vLLPpi 109 (575)
T KOG1965|consen 36 ALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFS------PDLFFLVLLPPI 109 (575)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEec------ccHHHHHhhchh
Confidence 34455666777888999999988 99999999999999953322111100 0 0111 123445556668
Q ss_pred HHHHhhccCchhHHhcchhHHHHHHHHHHHH-HHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcC
Q 003770 105 MFLVGLELDPKSLRQTGKKALGIAIAGISLP-FALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELK 183 (796)
Q Consensus 105 lF~~Gle~d~~~l~~~~~~~~~ia~~~~~i~-~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ 183 (796)
.|..|.+++.+.++|+......+++.|..++ +++|.++.++.......++. +..++++|+++|.|+|..+.++++|++
T Consensus 110 if~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~-f~d~L~fGaliSATDPVtvLaIfnel~ 188 (575)
T KOG1965|consen 110 IFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLS-FKDCLAFGALISATDPVTVLAIFNELG 188 (575)
T ss_pred hhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhccccccccc-HHHHHHHhhHhcccCchHHHHHHHHhC
Confidence 9999999999999999999999999998887 45565555543322233443 379999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCcc
Q 003770 184 LLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVP---VWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPVE 260 (796)
Q Consensus 184 ll~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~ 260 (796)
....+-.++.+++++||..+++++..+......+.+.... +..++........++...+.+-..+.|.+.-+ ...
T Consensus 189 -vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l~-~~~ 266 (575)
T KOG1965|consen 189 -VDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYLR-RTP 266 (575)
T ss_pred -CCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCc
Confidence 7899999999999999999999999888766554332222 11122222222223333344444444444333 244
Q ss_pred hHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCC-----CChhHHHHHHHHHHHHHHHHHHHHhhhhcc-ccchh
Q 003770 261 ETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKE-----GPFANALVEKVEDLVSGIFLPLYFVSSGLK-TNIAT 334 (796)
Q Consensus 261 e~~~~~~l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~~-----~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~-~dl~~ 334 (796)
..+..+.+++.+..+++||.+|+++++..+++|+++++. .+..+.-.+.+..+...+..-+-|+++|+. ++...
T Consensus 267 ~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~k 346 (575)
T KOG1965|consen 267 SLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQK 346 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccc
Confidence 567888999999999999999999999999999999862 223344445566666566667779999963 34333
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC----------CChHHHHHHHHHhhhhHHHHHHHHHhhh-cc-----C
Q 003770 335 IQGLQSWGLLALVILTACLGKIVGTFVVSLSFK----------VPLREALALGILMNTKGLVELIVLNIGK-DR-----K 398 (796)
Q Consensus 335 l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~----------~~~~e~~~lgl~l~~kG~~~l~l~~~~~-~~-----~ 398 (796)
..- .....+....++.+++|..-++..+.+.+ +|.++-..++|.-..||.++++++..-. +. .
T Consensus 347 ~~~-~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~~~~~q 425 (575)
T KOG1965|consen 347 HVY-KSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSPHTGGQ 425 (575)
T ss_pred eee-echHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhcccccccccc
Confidence 221 11123445566778888888777766654 3455566778865689999999885322 11 3
Q ss_pred CCChhHHHHHHHHHHHHHHhHHHHHHHHhh
Q 003770 399 VLNDQVFAIMILMAVVTTFMTTPLVMAVYK 428 (796)
Q Consensus 399 ~i~~~~~~~lvl~~lv~t~i~~pl~~~l~~ 428 (796)
.+-..+..++++++++....+.|+++++..
T Consensus 426 ~i~tttl~vVlfT~lv~Gg~T~pml~~L~~ 455 (575)
T KOG1965|consen 426 TIFTTTLVVVLFTVLVFGGSTKPMLSYLMI 455 (575)
T ss_pred EEEEeeeeeeeeeeeeeCCccHHHHHHhcc
Confidence 333444555556777777889999998854
No 17
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.78 E-value=5.6e-17 Score=165.13 Aligned_cols=346 Identities=14% Similarity=0.205 Sum_probs=246.3
Q ss_pred HHHHHHHHHHHHHHhcccCCChhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchh
Q 003770 37 ICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKS 116 (796)
Q Consensus 37 i~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~ 116 (796)
-+.+.+++...-.+-+++-+...+--.+.|+++||++++...+..- .+.......++.+-+..-.|.++.|+.-..
T Consensus 19 g~F~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~w----gn~d~it~ei~RvvLcvqvfava~eLPr~Y 94 (467)
T KOG4505|consen 19 GGFVSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNSW----GNKDYITYEISRVVLCVQVFAVAMELPRAY 94 (467)
T ss_pred hhHHHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCccc----cCcchhhhhhhhhhHhHHHHHHHHhccHHH
Confidence 3444555555556666777777777789999999999988664110 112345567788888889999999999999
Q ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhc---CccCChhHHHH
Q 003770 117 LRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAEL---KLLTADVGRMA 193 (796)
Q Consensus 117 l~~~~~~~~~ia~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el---~ll~s~~g~l~ 193 (796)
+.++|+..+.+-..-+++-.++.+...|.+.+. .+. ..++.+++.++.|+|.....+..+- |..+.++..++
T Consensus 95 ~l~~w~Si~vlllpVmi~gwlvs~~fvy~l~p~----lnf-~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL 169 (467)
T KOG4505|consen 95 MLEHWRSIFVLLLPVMIIGWLVSFGFVYALIPN----LNF-LTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLL 169 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----ccH-HHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHH
Confidence 999999888766555554455555555555432 223 6789999999999976666666543 34567888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCC-----Ch---hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCcchHHHH
Q 003770 194 MSAAAVNDVAAWILLALAVALSGSGQS-----SL---VPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPVEETYVC 265 (796)
Q Consensus 194 ls~a~i~D~~~~~ll~i~~~~~~~~~~-----~~---~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~ 265 (796)
.+++..||.++++++-+.+-+...+.. ++ ..++.....+.++.+++++.|..+++.-++. --..|+++.
T Consensus 170 ~AESGcNDGMaipflflai~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkr---lid~eSfl~ 246 (467)
T KOG4505|consen 170 AAESGCNDGMAIPFLFLAIDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKR---LIDRESFLI 246 (467)
T ss_pred HHhcCCCCCcchhHHHHHHHHHhcCchhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cccHHHHHH
Confidence 999999999999998888776554321 11 1122222233344444444444444443332 234688999
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCChhHHHH-HHHHHHHHHHHHHHHHhhhhccccchhhhhh----hh
Q 003770 266 ATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALV-EKVEDLVSGIFLPLYFVSSGLKTNIATIQGL----QS 340 (796)
Q Consensus 266 ~~l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~~~~~~~~l~-~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~----~~ 340 (796)
+-+++.+.|+.+.+.+|.+-.+-.|.||.+++.+..+.++.. .++..+...++.-.||++.|..+++++++.. ..
T Consensus 247 ~~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~v 326 (467)
T KOG4505|consen 247 FYVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPV 326 (467)
T ss_pred HHHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchH
Confidence 999999999999999999999999999999998777766554 3677777778888999999999998877542 36
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC--CChHHHHHHHHHhhhhHHHHHHHHHhhh
Q 003770 341 WGLLALVILTACLGKIVGTFVVSLSFK--VPLREALALGILMNTKGLVELIVLNIGK 395 (796)
Q Consensus 341 ~~~~~~i~~~~~~~K~~~~~l~~~~~~--~~~~e~~~lgl~l~~kG~~~l~l~~~~~ 395 (796)
|..+++-+.+.+.-|+.++++.-.+.. .+|||+++.|+ .+|.|.-++..+..+.
T Consensus 327 wrlvilsi~iif~RRip~v~l~kp~iPdikswkEALFvGh-FGPIGVgAly~allar 382 (467)
T KOG4505|consen 327 WRLVILSITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGH-FGPIGVGALYYALLAR 382 (467)
T ss_pred HHHHHHHHHHHHhcccceEEEeccCCcchhhHHHHHHhcc-CCCccHHHHHHHHHHH
Confidence 766665555666666666655433322 48999999999 8999998887776554
No 18
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.74 E-value=5.2e-15 Score=161.36 Aligned_cols=271 Identities=20% Similarity=0.289 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccCc-------hhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHH
Q 003770 92 VLDTLANLGLIFFMFLVGLELDP-------KSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMG 164 (796)
Q Consensus 92 ~l~~l~~lgl~~~lF~~Gle~d~-------~~l~~~~~~~~~ia~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg 164 (796)
..+.+.+--+.+|.|.+|+|+.. +..||..-+ ..-++.|+++|.++-.. +.... . ...--+|
T Consensus 62 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP-~~aAlGGm~vPaliy~~----~n~~~----~--~~~~GW~ 130 (423)
T PRK14853 62 LGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALP-VAAALGGMIVPALIYVA----VNLAG----G--GALRGWA 130 (423)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHH-HHHHHHhHHHHHHHHHH----HhCCc----h--hhhhhhh
Confidence 34455555667789999999944 443333322 45778899999754332 22110 0 1123333
Q ss_pred HHHhhccHHHHHHHHHhcCc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHhhH
Q 003770 165 VALSITAFPVLARILAELKL-LTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVP 243 (796)
Q Consensus 165 ~~ls~Ts~~vv~~iL~el~l-l~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~ 243 (796)
+ -+.||.+....++..+|- .++.++..+++.+++||+.+++++++.. +++ ....+.......+ ++.
T Consensus 131 I-p~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY---t~~---i~~~~L~~a~~~~--~~l---- 197 (423)
T PRK14853 131 I-PTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY---TSE---LNLEALLLALVPL--ALF---- 197 (423)
T ss_pred h-hhhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc---CCC---CCHHHHHHHHHHH--HHH----
Confidence 3 355888999999999764 5889999999999999999999988765 121 2222222222111 111
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCC-----------ChhHHHHHHHHH
Q 003770 244 PTFKWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEG-----------PFANALVEKVED 312 (796)
Q Consensus 244 ~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~~~-----------~~~~~l~~kl~~ 312 (796)
|+.++. ++++.+.++++. +++.+..+..|+|+.+|+|++|+++|..+ +..+++++++++
T Consensus 198 ----~~l~~~----~V~~~~~Y~ilg--~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p 267 (423)
T PRK14853 198 ----WLLVQK----RVRKWWLLLPLG--VATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRP 267 (423)
T ss_pred ----HHHHHc----CCchhhHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHH
Confidence 222232 234455555553 35667889999999999999999999411 346789999999
Q ss_pred HHHHHHHHHH-Hhhhhccccc-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHh
Q 003770 313 LVSGIFLPLY-FVSSGLKTNI-ATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILM 380 (796)
Q Consensus 313 ~~~~~~~Plf-F~~~G~~~dl-~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~----------~~~~~e~~~lgl~l 380 (796)
++..+++|+| |+..|.++|. ..+.+...-.....+++..+++|.+|.+..++.. +++|++-...|++-
T Consensus 268 ~V~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~L~ 347 (423)
T PRK14853 268 LSAGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVALLA 347 (423)
T ss_pred HHHHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHHH
Confidence 9999999999 9999999986 4342111112455677888999999988877753 46899988888854
Q ss_pred hhhHHHHHHHHHhhhc
Q 003770 381 NTKGLVELIVLNIGKD 396 (796)
Q Consensus 381 ~~kG~~~l~l~~~~~~ 396 (796)
+.-=++++.+.+.+++
T Consensus 348 GIGFTmSlFI~~LAf~ 363 (423)
T PRK14853 348 GIGFTVSLLIGELAFG 363 (423)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 4444788888888884
No 19
>PRK11175 universal stress protein UspE; Provisional
Probab=99.64 E-value=3.5e-15 Score=161.50 Aligned_cols=280 Identities=13% Similarity=0.072 Sum_probs=164.3
Q ss_pred ceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHH
Q 003770 452 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEA 531 (796)
Q Consensus 452 lriLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 531 (796)
.|||+|++.++.....++.+..++.. ...+++++|+++-.....+............... .+..++.++.+..
T Consensus 4 ~~ILv~~D~s~~~~~al~~a~~lA~~---~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~ 76 (305)
T PRK11175 4 QNILVVIDPNQDDQPALRRAVYLAQR---NGGKITAFLPIYDFSYEMTTLLSPDEREAMRQGV----ISQRTAWIREQAK 76 (305)
T ss_pred ceEEEEcCCCccccHHHHHHHHHHHh---cCCCEEEEEeccCchhhhhcccchhHHHHHHHHH----HHHHHHHHHHHHH
Confidence 36999999999999999998888753 5678899998853221111000000000000000 0011122222221
Q ss_pred hhhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEecCC
Q 003770 532 FQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRG 611 (796)
Q Consensus 532 ~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgIlvdrg 611 (796)
.....+++++..+... .+.+++|++.|++.++||||+|+|++.+..+. .+|++.+++++++||||.+.-++.
T Consensus 77 ~~~~~~~~~~~~v~~~--g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~------~~gs~~~~l~~~~~~pvlvv~~~~ 148 (305)
T PRK11175 77 PYLDAGIPIEIKVVWH--NRPFEAIIQEVIAGGHDLVVKMTHQHDKLESV------IFTPTDWHLLRKCPCPVLMVKDQD 148 (305)
T ss_pred HHhhcCCceEEEEecC--CCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhh------ccChhHHHHHhcCCCCEEEecccc
Confidence 1123467777765543 48899999999999999999999987544333 377888999999999987643321
Q ss_pred CCCCcccccCCcceEEEEeccCCcCh-------HHHHHHHHHHhcCC-CeEEEEEEeeecccccCCccc---cCCcCccc
Q 003770 612 LGGTTQVSASNVSYTITVLFFGGRDD-------REALACGARMAEHP-GISFIVIRFLLAADAIGNTVS---VDMAGNAS 680 (796)
Q Consensus 612 ~~~~~~~~~~~~~~~i~~~f~GG~dd-------reAL~~a~rma~~~-~v~ltvv~~~~~~~~~~~~~~---~~~~~~~~ 680 (796)
. ...++|++++.|++++ +.|+.+|.++|+.. +.+++++++.+........+. ..++.++.
T Consensus 149 ~---------~~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~ 219 (305)
T PRK11175 149 W---------PEGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDPSVYNDA 219 (305)
T ss_pred c---------CCCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccchhhHHHH
Confidence 1 1356999999998653 57999999999887 999999999753221000000 00011111
Q ss_pred cH---HHHHHHHHhhcCCCCceEEEEEEecChHHHHHHHHhcc--CCCEEEEccCCCchhhcccccCCCCCccccchhhh
Q 003770 681 MD---EEVLSEFKLKTSRNGSVRYEERLVRNTAETIAVIREVS--RCNLLLVGRMPDGELALALSTRSDCLELGPVGSLL 755 (796)
Q Consensus 681 ~d---~~~~~~~~~~~~~~~~v~~~e~~v~~~~~~~~~l~~~~--~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~igd~l 755 (796)
.. ++.++++..+.... ..+..+..|.-...+++..+ +.||+|+|.++ .+|+.+| =+|-..+-+
T Consensus 220 ~~~~~~~~l~~~~~~~~~~----~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~----~~~~~~~----llGS~a~~v 287 (305)
T PRK11175 220 IRGQHLLAMKALRQKFGID----EEQTHVEEGLPEEVIPDLAEHLDAELVILGTVG----RTGLSAA----FLGNTAEHV 287 (305)
T ss_pred HHHHHHHHHHHHHHHhCCC----hhheeeccCCHHHHHHHHHHHhCCCEEEECCCc----cCCCcce----eecchHHHH
Confidence 11 12344444433211 11122333322222333333 39999999987 3444433 377777777
Q ss_pred ccCCCCceeEEEEe
Q 003770 756 TSLEFSTASVLIIQ 769 (796)
Q Consensus 756 as~d~~~~SvLvvq 769 (796)
+..- . .+||||.
T Consensus 288 ~~~~-~-~pVLvv~ 299 (305)
T PRK11175 288 IDHL-N-CDLLAIK 299 (305)
T ss_pred HhcC-C-CCEEEEc
Confidence 7531 2 6999985
No 20
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.44 E-value=1.7e-11 Score=131.53 Aligned_cols=270 Identities=19% Similarity=0.309 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhHH---hcchhH---HHHHHHHHHHHHHHHHHHHHHHHhh-hccCCchhHHHHHHH
Q 003770 92 VLDTLANLGLIFFMFLVGLELDPKSLR---QTGKKA---LGIAIAGISLPFALGIGSSFLLRET-ISKGVDSTSFLVFMG 164 (796)
Q Consensus 92 ~l~~l~~lgl~~~lF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~i~~~~~~~~~~~l~~~-~~~~~~~~~~~l~lg 164 (796)
..+.+.+.-+.+|.|.+|+|+..+.+. ++.||+ ..-++.|+++|.++=..+.. ... ...+| |
T Consensus 52 l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy~~~n~--~~~~~~~GW---------~ 120 (373)
T TIGR00773 52 LLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIYLAFNA--NDPITREGW---------A 120 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHhheec--CCCcccCcc---------c
Confidence 344555555677899999998766554 233333 45567788888754322111 100 01122 2
Q ss_pred HHHhhccHHHHHHHHHhc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHhhH
Q 003770 165 VALSITAFPVLARILAEL-KLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVP 243 (796)
Q Consensus 165 ~~ls~Ts~~vv~~iL~el-~ll~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~ 243 (796)
+- ..|+.+....++.=+ +..+..+....++-+++||+.++++.++..+ ++ ....|.......+. +
T Consensus 121 IP-~ATDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt---~~---i~~~~L~~a~~~~~-~------ 186 (373)
T TIGR00773 121 IP-AATDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFYT---ND---LSMAALLVAAVAIA-V------ 186 (373)
T ss_pred cc-cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeecC---CC---CCHHHHHHHHHHHH-H------
Confidence 11 123333333333322 3367888899999999999999988876542 21 22333333322111 1
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCCh----hHHHHHHHHHHHHHHHH
Q 003770 244 PTFKWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPF----ANALVEKVEDLVSGIFL 319 (796)
Q Consensus 244 ~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~~~~~----~~~l~~kl~~~~~~~~~ 319 (796)
.++.+|.. .++...+..+. +++.+++ ...|+|+.+|+|++|+++|+..+. .+++++.+++.+..+++
T Consensus 187 ---l~~~~~~~----v~~~~~y~~lg-vllW~~~-~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~lil 257 (373)
T TIGR00773 187 ---LAVLNRCG----VRRLGPYMLVG-VILWFAV-LKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLIL 257 (373)
T ss_pred ---HHHHHHcC----CchhhHHHHHH-HHHHHHH-HHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 12233321 23344444433 3333333 799999999999999999975433 34566666666888999
Q ss_pred HHH-HhhhhccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhhhhHHHHH
Q 003770 320 PLY-FVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILMNTKGLVEL 388 (796)
Q Consensus 320 Plf-F~~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~----------~~~~~e~~~lgl~l~~kG~~~l 388 (796)
|+| |+..|.++|...+.. ........+++..+++|.+|++..++.. +++|++-.-.|++-+.-=++++
T Consensus 258 PlFAFanAGv~l~~~~~~~-~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~GIGFTmSl 336 (373)
T TIGR00773 258 PLFAFANAGVSLQGVSLNG-LTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGFTMSI 336 (373)
T ss_pred HHHHHHhcCeeeecCcchh-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999 999999998655432 2223466778889999999999888753 4688998888885444447888
Q ss_pred HHHHhhhc
Q 003770 389 IVLNIGKD 396 (796)
Q Consensus 389 ~l~~~~~~ 396 (796)
.+.+.+++
T Consensus 337 fI~~LAf~ 344 (373)
T TIGR00773 337 FIASLAFG 344 (373)
T ss_pred HHHHHhcC
Confidence 88888884
No 21
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.40 E-value=2.5e-12 Score=120.67 Aligned_cols=131 Identities=24% Similarity=0.344 Sum_probs=102.3
Q ss_pred eEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHHh
Q 003770 453 RILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAF 532 (796)
Q Consensus 453 riLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 532 (796)
|||+|++++++...+++.+..+++. .+.+++++|+++.+...... ... .. .++.++.++.+.+.
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~---~~~~v~ll~v~~~~~~~~~~---~~~-~~---------~~~~~~~~~~~~~~ 64 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARA---QNGEIIPLNVIEVPNHSSPS---QLE-VN---------VQRARKLLRQAERI 64 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhc---CCCeEEEEEEEecCCCCCcc---hhH-HH---------HHHHHHHHHHHHHH
Confidence 6999999999999999999999864 67789999999876544320 000 00 02345667777777
Q ss_pred hhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEE
Q 003770 533 QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGIL 607 (796)
Q Consensus 533 ~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgIl 607 (796)
..+.++.+++....+ .++.++||+.|++.++|+||||+|+++...+. .+|+++++|++++||||.|+
T Consensus 65 ~~~~g~~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~------~lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 65 AASLGVPVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSLRDR------LFGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred hhhcCCceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCccce------ecCchHHHHHhcCCCCEEEe
Confidence 666678888888776 58999999999999999999999988655333 37899999999999999763
No 22
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.27 E-value=2.1e-12 Score=142.20 Aligned_cols=372 Identities=13% Similarity=0.141 Sum_probs=237.3
Q ss_pred HHHHHHHHHHhcccC--CChhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHH
Q 003770 41 ILLTRGLAFILRPLR--QPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLR 118 (796)
Q Consensus 41 l~~~~~~~~ll~~l~--~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~ 118 (796)
..++.+..-+..+++ +|.-...|+.|+++|-.+.+.-. ..-+.-+ -+.+--.-+--++|-+|.-|.-+.+.
T Consensus 51 asLaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~---~~~~~L~----s~vFFlyLLPPIvlDAGYfMp~r~Ff 123 (670)
T KOG1966|consen 51 ASLAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALAT---IAPFFLE----SDVFFLYLLPPIVLDAGYFMPNRAFF 123 (670)
T ss_pred HHHHHhcccccccccccCchhHHHHHHHHHHHHHHHhhhc---ccccccc----ccchhhhhcCHHHhcccccCccHHHH
Confidence 333444444444554 79888899999999854432211 0000000 11222222334789999999999999
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHH--hhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHH
Q 003770 119 QTGKKALGIAIAGISLPFALGIGSSFLLR--ETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSA 196 (796)
Q Consensus 119 ~~~~~~~~ia~~~~~i~~~~~~~~~~~l~--~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~ 196 (796)
.|...++..|++|.+.-.+...+..+.+. ..++.. ......+++|...|..+|..+..+..|.+ .|.-+=-++.++
T Consensus 124 ~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~-~glld~LlFgSLIsAVDPVAVLaVFEEih-VNe~LfI~VFGE 201 (670)
T KOG1966|consen 124 ENLGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMS-IGLLDILLFGSLISAVDPVAVLAVFEEIH-VNEVLFIIVFGE 201 (670)
T ss_pred hccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-chHHHHHHHHHHHHhcCchhhhhhhhhhc-cccEEEeeeehh
Confidence 99999999999999886443322222222 222212 22356788999999999999999999999 788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCh------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 003770 197 AAVNDVAAWILLALAVALSGSGQSSL------VPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPVEETYVCATLAA 270 (796)
Q Consensus 197 a~i~D~~~~~ll~i~~~~~~~~~~~~------~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~~ 270 (796)
+++||.+.++++-+...+..-++... .....++...+.++.++.+.+.+.....|.+.+ ++-...++++.+
T Consensus 202 SLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~~---vrviePvfif~~ 278 (670)
T KOG1966|consen 202 SLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTKH---VRVLEPVFIFLL 278 (670)
T ss_pred hhhcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhcc---eeeecchhhhhH
Confidence 99999999999988877655432111 111111111112233333344444444444422 445567889999
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHhhcCC--CCChhHHH---HHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhHHHHH
Q 003770 271 VLAAGFITDAIGIHAMFGAFVVGVLVPK--EGPFANAL---VEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLA 345 (796)
Q Consensus 271 ~l~~~~~ae~~g~~~~lgafvaGl~l~~--~~~~~~~l---~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~ 345 (796)
.+++|..+|.+++|++++..++|+++.. .....++. ++..-...+..--++-|++.|.++--. .. .+.|..++
T Consensus 279 pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~-~h-~wd~~Fi~ 356 (670)
T KOG1966|consen 279 PYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSS-NH-HWDFAFIC 356 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCC-cc-eeehhhhh
Confidence 9999999999999999999999999975 12222222 223333344566677888899875432 22 24555566
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC------CChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCC-----hhHHHHHHHHHHH
Q 003770 346 LVILTACLGKIVGTFVVSLSFK------VPLREALALGILMNTKGLVELIVLNIGKDRKVLN-----DQVFAIMILMAVV 414 (796)
Q Consensus 346 ~i~~~~~~~K~~~~~l~~~~~~------~~~~e~~~lgl~l~~kG~~~l~l~~~~~~~~~i~-----~~~~~~lvl~~lv 414 (796)
+-++...+.|.+++...+++.+ ++..|-+.++. -+-||.++..+...--...+-. ..++.++.+++.+
T Consensus 357 ~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsy-GGLRGAiaF~LV~lid~~~vp~K~~Fvttti~VIfFTVfl 435 (670)
T KOG1966|consen 357 LTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSY-GGLRGAIAFGLVVLIDGAKVPAKNMFVTTTIAVIFFTVFL 435 (670)
T ss_pred hHHHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeec-CCcchhhheeEEEEeccccCCcccceEeeeeEEEeeeeee
Confidence 6667778889999888888763 57778888777 3668887776544332232222 2333444445555
Q ss_pred HHHhHHHHHHHHh
Q 003770 415 TTFMTTPLVMAVY 427 (796)
Q Consensus 415 ~t~i~~pl~~~l~ 427 (796)
..+..-|+++|+-
T Consensus 436 QGiTIkplvk~L~ 448 (670)
T KOG1966|consen 436 QGITIKPLVKFLK 448 (670)
T ss_pred cccchHHHHHHHc
Confidence 5666789999974
No 23
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.12 E-value=1.4e-08 Score=110.95 Aligned_cols=269 Identities=20% Similarity=0.313 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhHH---hcchhH---HHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHH
Q 003770 92 VLDTLANLGLIFFMFLVGLELDPKSLR---QTGKKA---LGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV 165 (796)
Q Consensus 92 ~l~~l~~lgl~~~lF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~ 165 (796)
..+.+.+.-+.+|.|.+|+|+.-+.+. ++.|++ ..-++.|+++|.++=.. +....+ . .-.+|+
T Consensus 68 l~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlIY~~----~n~~~~-~------~~GWgI 136 (438)
T PRK14856 68 LHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLIYFF----LNADTP-S------QHGFGI 136 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHHHhh----eecCCC-c------cCcccc
Confidence 345566666778999999998766553 233333 45567788888753322 211100 0 112222
Q ss_pred HHhhccHHHHHHHHHhc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHhhHH
Q 003770 166 ALSITAFPVLARILAEL-KLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPP 244 (796)
Q Consensus 166 ~ls~Ts~~vv~~iL~el-~ll~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~ 244 (796)
-+ .|+.+....++.=+ +..+..+...+++-+++||+.++++.++..+ . .....|..+....+.++
T Consensus 137 Pm-ATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~---~i~~~~L~~a~~~~~~l------- 202 (438)
T PRK14856 137 PM-ATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT---T---NLKFAWLLGALGVVLVL------- 202 (438)
T ss_pred cc-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---C---CCcHHHHHHHHHHHHHH-------
Confidence 22 24444444444333 3367788899999999999999988876552 2 12333433333222111
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCCh----------------------
Q 003770 245 TFKWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPF---------------------- 302 (796)
Q Consensus 245 ~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~~~~~---------------------- 302 (796)
++.+|.. ++....++++.+++ -+....-|+|+.++..+.|+++|..++.
T Consensus 203 ---~~ln~~~----v~~~~~Y~~~G~~l--W~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (438)
T PRK14856 203 ---AVLNRLN----VRSLIPYLLLGVLL--WFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGAL 273 (438)
T ss_pred ---HHHHHcC----CccccHHHHHHHHH--HHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhccccccc
Confidence 2223321 23344444444433 3445578999999999999999963221
Q ss_pred ----------------------hHHHHHHHHHHHHHHHHHHH-HhhhhccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 003770 303 ----------------------ANALVEKVEDLVSGIFLPLY-FVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGT 359 (796)
Q Consensus 303 ----------------------~~~l~~kl~~~~~~~~~Plf-F~~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~ 359 (796)
.+++++.+.+.+..+.+|+| |.-.|..++..... ..-.....+++..++||.+|.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~--~~~pv~lGI~~GLvvGK~lGI 351 (438)
T PRK14856 274 LTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINL--EVDKVLLGVILGLCLGKPLGI 351 (438)
T ss_pred cccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhh--ccCcHHHHHHHHHHhcchHHH
Confidence 13466677778888999999 99999998754221 112334556778888999999
Q ss_pred HHHHHhc----------CCChHHHHHHHHHhhhhHHHHHHHHHhhhc
Q 003770 360 FVVSLSF----------KVPLREALALGILMNTKGLVELIVLNIGKD 396 (796)
Q Consensus 360 ~l~~~~~----------~~~~~e~~~lgl~l~~kG~~~l~l~~~~~~ 396 (796)
+..++.. +++|++-.-.|++-+.-=++++.+.+.+++
T Consensus 352 ~~~s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~ 398 (438)
T PRK14856 352 FLITFISEKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAFT 398 (438)
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8887753 468899888888544444788888888884
No 24
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.08 E-value=2.9e-08 Score=106.89 Aligned_cols=269 Identities=19% Similarity=0.270 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHHHHHHhhccCchhHH---hcchhH---HHHHHHHHHHHHHHHHHHHHHHHhh-hccCCchhHHHHHHHH
Q 003770 93 LDTLANLGLIFFMFLVGLELDPKSLR---QTGKKA---LGIAIAGISLPFALGIGSSFLLRET-ISKGVDSTSFLVFMGV 165 (796)
Q Consensus 93 l~~l~~lgl~~~lF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~i~~~~~~~~~~~l~~~-~~~~~~~~~~~l~lg~ 165 (796)
.+.+.+.-+.+|.|.+|+|+..+.+. ++.|++ +.-++.|+++|.++=+.+.. +.. ...+| |+
T Consensus 60 ~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy~~~n~--g~~~~~~GW---------gI 128 (389)
T PRK09560 60 LHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYAAFNY--NNPETLRGW---------AI 128 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHheeec--CCCcccCcc---------cc
Confidence 44455555677899999998766554 233333 45567788888754332211 100 01122 22
Q ss_pred HHhhccHHHHHHHHHhc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHhhHH
Q 003770 166 ALSITAFPVLARILAEL-KLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPP 244 (796)
Q Consensus 166 ~ls~Ts~~vv~~iL~el-~ll~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~ 244 (796)
- ..|+.+....++.=+ +..+..+...+++-+++||+.++++.++..+ ++ ....|.......+.++
T Consensus 129 P-mATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt---~~---i~~~~L~~a~~~~~~l------- 194 (389)
T PRK09560 129 P-AATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT---SD---LSLPALALAAIAIAVL------- 194 (389)
T ss_pred c-cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC---CC---CCHHHHHHHHHHHHHH-------
Confidence 1 124444444444322 3367788899999999999999988876542 21 2333333332222111
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCC------hhHHHHHHHHHHHHHHH
Q 003770 245 TFKWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGP------FANALVEKVEDLVSGIF 318 (796)
Q Consensus 245 ~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~~~~------~~~~l~~kl~~~~~~~~ 318 (796)
++.+|.. .+....+..+..++. +....-|+|+.++..+.|+++|...+ ..+++++++++.+..+.
T Consensus 195 ---~~ln~~~----v~~~~~Y~~~G~~lW--~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~~I 265 (389)
T PRK09560 195 ---FLLNRLG----VTKLTPYLIVGAILW--FAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAFAI 265 (389)
T ss_pred ---HHHHHcC----CccchHHHHHHHHHH--HHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhhhh
Confidence 2223321 233444444444333 34557899999999999999996322 13678899999998888
Q ss_pred HHHH-HhhhhccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhhhhHHHH
Q 003770 319 LPLY-FVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILMNTKGLVE 387 (796)
Q Consensus 319 ~Plf-F~~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~----------~~~~~e~~~lgl~l~~kG~~~ 387 (796)
+|+| |.-.|..++-..+.. ..-.....+++..++||.+|.+..++.. +++|++-.-.|++-+.-=+++
T Consensus 266 lPlFAlaNAGV~l~~~~~~~-~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmS 344 (389)
T PRK09560 266 LPLFAFANAGVSLAGISLSS-LTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSVLCGIGFTMS 344 (389)
T ss_pred HHHHHhhcCCeeecCCcHHh-ccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999 888898884222221 1122345667788889999988887753 468899888888544444788
Q ss_pred HHHHHhhhc
Q 003770 388 LIVLNIGKD 396 (796)
Q Consensus 388 l~l~~~~~~ 396 (796)
+.+...+++
T Consensus 345 LFIa~LAF~ 353 (389)
T PRK09560 345 LFIGSLAFG 353 (389)
T ss_pred HHHHHhhcC
Confidence 888888883
No 25
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.05 E-value=1.7e-09 Score=103.58 Aligned_cols=139 Identities=11% Similarity=0.207 Sum_probs=93.4
Q ss_pred eEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHH----HHhhhhcCCCCCcCCCCCCCcchHHHH
Q 003770 453 RILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAIL----MVHKARRNGLPFWNRGRQSNPNHIVVA 528 (796)
Q Consensus 453 riLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~a 528 (796)
+||+|++++++...+++.+..++.. ...+++++|+++.+....... ........ . .+..++.++.
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~---~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~l~~ 69 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLAT---KGQTIVLVHVHPPITSIPSSSGKLEVASAYKQE-E-------DKEAKELLLP 69 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccC---CCCcEEEEEeccCcccCCCCccchHHHHHHHHH-H-------HHHHHHHHHH
Confidence 4899999999999999999988754 567889999987542211000 00000000 0 0122334443
Q ss_pred HHHhhhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhH-HHHHHHhhcCC--CceE
Q 003770 529 FEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFR-WVNQRVLKHAP--CSVG 605 (796)
Q Consensus 529 f~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~-~vn~~vl~~Ap--csVg 605 (796)
+.+..+..++.++.....+ .++.+.|++.|++.++|+||||.|++.+....+ ++ ++.++|+++|| |||-
T Consensus 70 ~~~~~~~~~~~~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~------~gssva~~Vi~~a~~~c~Vl 141 (146)
T cd01989 70 YRCFCSRKGVQCEDVVLED--DDVAKAIVEYVADHGITKLVMGASSDNHFSMKF------KKSDVASSVLKEAPDFCTVY 141 (146)
T ss_pred HHHHHhhcCCeEEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCCCceeecc------cCCchhHHHHhcCCCCceEE
Confidence 3333333567777766654 488999999999999999999999886544333 44 58999999999 9986
Q ss_pred EEecCC
Q 003770 606 ILIDRG 611 (796)
Q Consensus 606 Ilvdrg 611 (796)
| |.+|
T Consensus 142 v-v~~~ 146 (146)
T cd01989 142 V-VSKG 146 (146)
T ss_pred E-EeCc
Confidence 5 6554
No 26
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.03 E-value=5.4e-08 Score=104.62 Aligned_cols=270 Identities=21% Similarity=0.318 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhHH---hcchhH---HHHHHHHHHHHHHHHHHHHHHHHhh-hccCCchhHHHHHHH
Q 003770 92 VLDTLANLGLIFFMFLVGLELDPKSLR---QTGKKA---LGIAIAGISLPFALGIGSSFLLRET-ISKGVDSTSFLVFMG 164 (796)
Q Consensus 92 ~l~~l~~lgl~~~lF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~i~~~~~~~~~~~l~~~-~~~~~~~~~~~l~lg 164 (796)
..+.+.+.-+.+|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++=..+.. ... ...+| |
T Consensus 59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy~~~n~--~~~~~~~GW---------a 127 (388)
T PRK09561 59 LLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIYLLFNY--ADPVTREGW---------A 127 (388)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHHhheec--CCCcccCcc---------c
Confidence 344455555667889999999776654 233333 45567788888754332111 100 01122 2
Q ss_pred HHHhhccHHHHHHHHHhc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHhhH
Q 003770 165 VALSITAFPVLARILAEL-KLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVP 243 (796)
Q Consensus 165 ~~ls~Ts~~vv~~iL~el-~ll~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~ 243 (796)
+- ..|+.+....++.=+ +..+..+...+++-+++||+.++++.++..+ ++ ....+.......+. +.
T Consensus 128 IP-~ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~---i~~~~L~~a~~~~~--~l---- 194 (388)
T PRK09561 128 IP-AATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYT---SD---LSMVSLGVAAVAIA--VL---- 194 (388)
T ss_pred cc-cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---CC---ccHHHHHHHHHHHH--HH----
Confidence 11 124443333333322 3367788899999999999999988876542 21 22333333222111 11
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCC----hhHHHHHHHHHHHHHHHH
Q 003770 244 PTFKWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGP----FANALVEKVEDLVSGIFL 319 (796)
Q Consensus 244 ~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~~~~----~~~~l~~kl~~~~~~~~~ 319 (796)
++.+|.. .+....+.++..++. +.....|+|+.++..+.|+++|...+ ..+++++++++.+..+.+
T Consensus 195 ----~~ln~~~----v~~~~~Y~~~G~~lW--~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~Il 264 (388)
T PRK09561 195 ----AVLNLCG----VRRTSVYILVGVVLW--VAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFLIL 264 (388)
T ss_pred ----HHHHHcC----CccchHHHHHHHHHH--HHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhheeH
Confidence 2223321 233444444444333 44567899999999999999996322 246788999999988899
Q ss_pred HHH-HhhhhccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhhhhHHHHH
Q 003770 320 PLY-FVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILMNTKGLVEL 388 (796)
Q Consensus 320 Plf-F~~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~----------~~~~~e~~~lgl~l~~kG~~~l 388 (796)
|+| |.-.|..++-..+.. ..-.....+++..++||.+|.+..++.. +++|++-.-.|++-+.-=++++
T Consensus 265 PlFAfaNAGV~l~~~~~~~-~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSL 343 (388)
T PRK09561 265 PLFAFANAGVSLQGVTLDG-LTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCGIGFTMSI 343 (388)
T ss_pred HHHHhhcCCeeeccCcHHh-hcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999 888888873212221 1122344566788889999988887753 4688998888885444447888
Q ss_pred HHHHhhhc
Q 003770 389 IVLNIGKD 396 (796)
Q Consensus 389 ~l~~~~~~ 396 (796)
.+.+.+++
T Consensus 344 FIa~LAF~ 351 (388)
T PRK09561 344 FIASLAFG 351 (388)
T ss_pred HHHHHhcC
Confidence 88888885
No 27
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.00 E-value=1.8e-07 Score=100.25 Aligned_cols=272 Identities=17% Similarity=0.244 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhHH---hcchhH---HHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHH
Q 003770 92 VLDTLANLGLIFFMFLVGLELDPKSLR---QTGKKA---LGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV 165 (796)
Q Consensus 92 ~l~~l~~lgl~~~lF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~ 165 (796)
..+.+.+.-+.+|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++=..+.. ......+| |+
T Consensus 56 l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~~n~--~~~~~~GW---------~I 124 (383)
T PRK14854 56 LMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLSINH--DIKVINGW---------AI 124 (383)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHhhcc--CCcccCcc---------cc
Confidence 344455555677899999998766543 233333 45567788888754332221 11101122 22
Q ss_pred HHhhccHHHHHHHHHhc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHhhHH
Q 003770 166 ALSITAFPVLARILAEL-KLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPP 244 (796)
Q Consensus 166 ~ls~Ts~~vv~~iL~el-~ll~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~ 244 (796)
- ..||.+....++.=+ +..+..+.-.+++-+++||+.++++.++..+ ++ ....+.......+ .+.+
T Consensus 125 P-~ATDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFYt---~~---i~~~~L~~A~~~~--~~l~---- 191 (383)
T PRK14854 125 P-SATDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFYT---KS---LSLLSLSLGTLFI--LAMI---- 191 (383)
T ss_pred c-cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC---CC---ccHHHHHHHHHHH--HHHH----
Confidence 1 123333333333322 3367888888999999999999988876542 21 2222222221111 1111
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCC----hhHHHHHHHHHHHHHHHHH
Q 003770 245 TFKWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGP----FANALVEKVEDLVSGIFLP 320 (796)
Q Consensus 245 ~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~~~~----~~~~l~~kl~~~~~~~~~P 320 (796)
..+|.. ..+....++++..++ -+....-|+|+.++..+.|+++|...+ -.+++++++++.+..+.+|
T Consensus 192 ----~~nr~~---~v~~~~~Y~~~G~~l--W~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~IlP 262 (383)
T PRK14854 192 ----ICNRIF---KINRSSVYVVLGFFA--WFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFILP 262 (383)
T ss_pred ----HHHHhc---CCceehHHHHHHHHH--HHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhhHH
Confidence 122210 122334444444333 345567899999999999999996321 2367888899999999999
Q ss_pred HH-HhhhhccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhhhhHHHHHH
Q 003770 321 LY-FVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILMNTKGLVELI 389 (796)
Q Consensus 321 lf-F~~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~----------~~~~~e~~~lgl~l~~kG~~~l~ 389 (796)
+| |.-.|..++-..+.. ........+++..++||.+|.+..++.. +++|++-.-.|++-+.-=++++.
T Consensus 263 lFA~aNAGV~l~~~~~~~-~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLF 341 (383)
T PRK14854 263 VFAFANAGISFSGISFSI-LFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLLCGIGFTMSLF 341 (383)
T ss_pred HHHhhcCCeeeccCcHHh-hcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99 888898884222221 1123345667788889999988887653 36889988888854444478888
Q ss_pred HHHhhhcc
Q 003770 390 VLNIGKDR 397 (796)
Q Consensus 390 l~~~~~~~ 397 (796)
+++.+++.
T Consensus 342 Ia~LAF~~ 349 (383)
T PRK14854 342 IGVLAFND 349 (383)
T ss_pred HHHhhCCC
Confidence 88888853
No 28
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.98 E-value=1.1e-07 Score=103.59 Aligned_cols=266 Identities=22% Similarity=0.266 Sum_probs=163.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCchhHH---hcchhH---HHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHH
Q 003770 93 LDTLANLGLIFFMFLVGLELDPKSLR---QTGKKA---LGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVA 166 (796)
Q Consensus 93 l~~l~~lgl~~~lF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ 166 (796)
.+.+.+--+.+|.|.+|+|+.-+.+. ++.|++ ..-++.|+++|.++=.. +....+ . .--+|+-
T Consensus 64 ~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlIy~~----~n~~~~-~------~~GWgIP 132 (423)
T PRK14855 64 EHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAALYTA----LNAGGP-G------ASGWGVP 132 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHHHhe----eecCCC-c------cCccccc
Confidence 44455555667889999999776654 233333 45567788888653222 211100 0 1122222
Q ss_pred HhhccHHHHHHHHHhc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHhhHHH
Q 003770 167 LSITAFPVLARILAEL-KLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPT 245 (796)
Q Consensus 167 ls~Ts~~vv~~iL~el-~ll~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~ 245 (796)
..|+.+....++.=+ +..+..+...+++-+++||+.++++.++..+ ++ ....|..+..+.+. +
T Consensus 133 -mATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~---i~~~~L~~a~~~~~-~-------- 196 (423)
T PRK14855 133 -MATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYT---SG---LNLLALLLAALTWA-L-------- 196 (423)
T ss_pred -cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecC---CC---CCHHHHHHHHHHHH-H--------
Confidence 224444444444333 3356778899999999999999988776542 21 22333333322211 1
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCC-CCh----------------------
Q 003770 246 FKWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKE-GPF---------------------- 302 (796)
Q Consensus 246 ~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~~-~~~---------------------- 302 (796)
.++.+|.. ++....++.+.+++ -+....-|+|+.++..+.|+++|.. .+.
T Consensus 197 -l~~ln~~~----v~~~~~Y~~~G~~l--W~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (423)
T PRK14855 197 -ALLAGRLG----VTSLKIYAVLGALL--WFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVGAR 269 (423)
T ss_pred -HHHHHHcC----CccccHHHHHHHHH--HHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhhHH
Confidence 12223321 23344444444333 3345578999999999999999963 111
Q ss_pred --------------hHHHHHHHHHHHHHHHHHHH-HhhhhccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 003770 303 --------------ANALVEKVEDLVSGIFLPLY-FVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF- 366 (796)
Q Consensus 303 --------------~~~l~~kl~~~~~~~~~Plf-F~~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~- 366 (796)
.+++++++++.+..+.+|+| |.-.|..++-.. .. .....+++..++||.+|.+..++..
T Consensus 270 ~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~~----pv~lGI~~GLvvGK~lGI~~~s~lav 344 (423)
T PRK14855 270 LRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGG-LG----TVSLGVFLGLLLGKPLGVVGGAWLAV 344 (423)
T ss_pred HHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC-CC----cHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 24577778888888899999 888898884322 21 2344566778889999998887753
Q ss_pred ---------CCChHHHHHHHHHhhhhHHHHHHHHHhhhcc
Q 003770 367 ---------KVPLREALALGILMNTKGLVELIVLNIGKDR 397 (796)
Q Consensus 367 ---------~~~~~e~~~lgl~l~~kG~~~l~l~~~~~~~ 397 (796)
+++|++-.-.|++-+.-=++++.+++.+++.
T Consensus 345 kl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~ 384 (423)
T PRK14855 345 RLGLASLPRRVNWLHMLGAGLLAGIGFTMSLFISNLAFAD 384 (423)
T ss_pred HhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 4689998888885444447888888888853
No 29
>PRK15456 universal stress protein UspG; Provisional
Probab=98.96 E-value=2e-09 Score=102.73 Aligned_cols=136 Identities=12% Similarity=0.090 Sum_probs=87.3
Q ss_pred ceEEEEeecC--CChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHH
Q 003770 452 FRILACFHSA--RNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAF 529 (796)
Q Consensus 452 lriLv~v~~~--~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af 529 (796)
.|||+|++.+ ++...+++.+..++.. . .+++++|+++...... . .. .......+.++. ....++.++.+
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~la~~---~-~~l~llhv~~~~~~~~-~--~~-~~~~~~~~~~~~-~~~~~~~l~~~ 73 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEFLAQD---D-GVIHLLHVLPGSASLS-L--HR-FAADVRRFEEHL-QHEAEERLQTM 73 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHHHHhc---C-CeEEEEEEecCccccc-c--cc-cccchhhHHHHH-HHHHHHHHHHH
Confidence 4799999987 4788899998888743 3 3799999987542111 0 00 000000000000 01122223323
Q ss_pred HHhhhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEE
Q 003770 530 EAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 606 (796)
Q Consensus 530 ~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgI 606 (796)
.+.....++.+++.+..+ +..++|++.|++.++||||||.|++. ..+. .+||+.++|++++||||-|
T Consensus 74 ~~~~~~~~~~v~~~v~~G---~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~------llGS~a~~v~~~a~~pVLv 140 (142)
T PRK15456 74 VSHFTIDPSRIKQHVRFG---SVRDEVNELAEELGADVVVIGSRNPS-ISTH------LLGSNASSVIRHANLPVLV 140 (142)
T ss_pred HHHhCCCCcceEEEEcCC---ChHHHHHHHHhhcCCCEEEEcCCCCC-ccce------ecCccHHHHHHcCCCCEEE
Confidence 222222457778777766 89999999999999999999999863 3332 3789999999999999865
No 30
>PRK15005 universal stress protein F; Provisional
Probab=98.93 E-value=4.2e-09 Score=100.52 Aligned_cols=135 Identities=18% Similarity=0.146 Sum_probs=85.6
Q ss_pred ceEEEEeecCCC--hhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHH
Q 003770 452 FRILACFHSARN--IPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAF 529 (796)
Q Consensus 452 lriLv~v~~~~~--~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af 529 (796)
.+||+|++++++ ...+++.+..++.. ...+++++|+++............. ......+ ...++..+.+
T Consensus 3 ~~ILv~~D~s~~~~~~~a~~~a~~la~~---~~~~l~ll~v~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~~~l 72 (144)
T PRK15005 3 RTILVPIDISDSELTQRVISHVEAEAKI---DDAEVHFLTVIPSLPYYASLGLAYS---AELPAMD----DLKAEAKSQL 72 (144)
T ss_pred ccEEEecCCCchhHHHHHHHHHHHHHhc---cCCeEEEEEEEccCccccccccccc---ccchHHH----HHHHHHHHHH
Confidence 369999999887 46788887777743 5678999999975322111000000 0000000 0111222233
Q ss_pred HHhhhc---cCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEE
Q 003770 530 EAFQQL---SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 606 (796)
Q Consensus 530 ~~~~~~---~~v~v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgI 606 (796)
+++.+. .++.++..+..+ +..+.|++.|++.++|+||||.|+ .+..+ ..+|++..+|++++||||.|
T Consensus 73 ~~~~~~~~~~~~~~~~~v~~G---~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~------~llGS~a~~vl~~a~cpVlv 142 (144)
T PRK15005 73 EEIIKKFKLPTDRVHVHVEEG---SPKDRILELAKKIPADMIIIASHR-PDITT------YLLGSNAAAVVRHAECSVLV 142 (144)
T ss_pred HHHHHHhCCCCCceEEEEeCC---CHHHHHHHHHHHcCCCEEEEeCCC-CCchh------eeecchHHHHHHhCCCCEEE
Confidence 333322 455667666655 889999999999999999999884 33333 23788999999999999866
No 31
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.88 E-value=9.1e-09 Score=95.54 Aligned_cols=121 Identities=17% Similarity=0.124 Sum_probs=89.3
Q ss_pred eEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHHh
Q 003770 453 RILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAF 532 (796)
Q Consensus 453 riLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 532 (796)
|||+|+++++....+++.+..++.. .+.+++++|+++-... . . .+..++.++.+++.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~---~~~~l~ll~v~~~~~~--~-----------~-------~~~~~~~l~~~~~~ 57 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADR---LKAPWYVVYVETPRLN--R-----------L-------SEAERRRLAEALRL 57 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHH---hCCCEEEEEEecCccc--c-----------C-------CHHHHHHHHHHHHH
Confidence 6899999999999999999988854 5678899999863211 0 0 01234455555555
Q ss_pred hhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcC-CCceEE
Q 003770 533 QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHA-PCSVGI 606 (796)
Q Consensus 533 ~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~A-pcsVgI 606 (796)
.++.++. ..+..+ .+..+.|++.|++.++|+|++|+|+++..... .+|++.++|+++| ||+|-|
T Consensus 58 ~~~~~~~--~~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~------~~Gs~~~~v~~~a~~~~v~v 122 (124)
T cd01987 58 AEELGAE--VVTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRSRWREL------FRGSLVDRLLRRAGNIDVHI 122 (124)
T ss_pred HHHcCCE--EEEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCchHHHH------hcccHHHHHHHhCCCCeEEE
Confidence 5444443 334444 57899999999999999999999988655433 3788999999999 999865
No 32
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.85 E-value=1e-08 Score=96.00 Aligned_cols=133 Identities=19% Similarity=0.261 Sum_probs=91.1
Q ss_pred ceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHH-
Q 003770 452 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFE- 530 (796)
Q Consensus 452 lriLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~- 530 (796)
.|||+|+++.++...+++.+..++.. ...+++++|+++................. ..++......
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~---~~~~i~~l~v~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 68 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKR---SGAEITLLHVIPPPPQYSFSAAEDEESEE-----------EAEEEEQARQA 68 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHH---HTCEEEEEEEEESCHCHHHHHHHHHHHHH-----------HHHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHh---hCCeEEEEEeecccccccccccccccccc-----------ccchhhhhhhH
Confidence 48999999999999999998888854 67889999999977655543211111000 0001110000
Q ss_pred --Hhhhc-cCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEE
Q 003770 531 --AFQQL-SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGIL 607 (796)
Q Consensus 531 --~~~~~-~~v~v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgIl 607 (796)
..... ........... .+..++|++.+++.++|+||+|.|++....+.+ ++++.+++++++||||.|+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~------~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 69 EAEEAEAEGGIVIEVVIES---GDVADAIIEFAEEHNADLIVMGSRGRSGLERLL------FGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp HHHHHHHHTTSEEEEEEEE---SSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSS------SHHHHHHHHHHTSSEEEEE
T ss_pred HHHHHhhhccceeEEEEEe---eccchhhhhccccccceeEEEeccCCCCccCCC------cCCHHHHHHHcCCCCEEEe
Confidence 11122 33444444444 499999999999999999999999865554433 8899999999999998763
No 33
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=98.84 E-value=1.9e-08 Score=96.13 Aligned_cols=133 Identities=8% Similarity=0.016 Sum_probs=85.3
Q ss_pred ceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHH
Q 003770 452 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEA 531 (796)
Q Consensus 452 lriLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 531 (796)
.|||+|++.+++...+++.+..++.. ...+++++|+.+......... ......... ....++..+.+++
T Consensus 4 ~~ILvavD~S~~s~~al~~a~~la~~---~~a~l~ll~v~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~l~~ 72 (144)
T PRK15118 4 KHILIAVDLSPESKVLVEKAVSMARP---YNAKVSLIHVDVNYSDLYTGL----IDVNLGDMQ----KRISEETHHALTE 72 (144)
T ss_pred eEEEEEccCChhHHHHHHHHHHHHHh---hCCEEEEEEEccChhhhhhhh----hhcchHHHH----HHHHHHHHHHHHH
Confidence 47999999999999999988888743 567899999843211110000 000000000 0112233344555
Q ss_pred hhhccCeEEE-EeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEE
Q 003770 532 FQQLSRVSVR-PMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGIL 607 (796)
Q Consensus 532 ~~~~~~v~v~-~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgIl 607 (796)
+.+..++.+. .....+ +.++.|++.|++.++||||||.|++ + . . .++|+.++|+++|||||-|.
T Consensus 73 ~~~~~~~~~~~~~~~~G---~p~~~I~~~a~~~~~DLIV~Gs~~~----~-~--~--~lgSva~~v~~~a~~pVLvv 137 (144)
T PRK15118 73 LSTNAGYPITETLSGSG---DLGQVLVDAIKKYDMDLVVCGHHQD----F-W--S--KLMSSARQLINTVHVDMLIV 137 (144)
T ss_pred HHHhCCCCceEEEEEec---CHHHHHHHHHHHhCCCEEEEeCccc----H-H--H--HHHHHHHHHHhhCCCCEEEe
Confidence 5544555543 333344 8899999999999999999999952 1 1 1 16799999999999998663
No 34
>PRK09982 universal stress protein UspD; Provisional
Probab=98.82 E-value=1.2e-08 Score=97.35 Aligned_cols=132 Identities=8% Similarity=0.017 Sum_probs=84.0
Q ss_pred ceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHH
Q 003770 452 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEA 531 (796)
Q Consensus 452 lriLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 531 (796)
.+||+|++++++...+++.+..++.. .+.+++++|+++......+.. .....+.. .+ ...++..+.++.
T Consensus 4 k~ILvavD~S~~s~~al~~A~~lA~~---~~a~l~llhV~~~~~~~~~~~--~~~~~~~~--~~----~~~~~~~~~l~~ 72 (142)
T PRK09982 4 KHIGVAISGNEEDALLVNKALELARH---NDAHLTLIHIDDGLSELYPGI--YFPATEDI--LQ----LLKNKSDNKLYK 72 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHHHH---hCCeEEEEEEccCcchhchhh--hccchHHH--HH----HHHHHHHHHHHH
Confidence 47999999999999999998888843 678899999986432111000 00000000 00 001112222333
Q ss_pred hhhc-cCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEE
Q 003770 532 FQQL-SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 606 (796)
Q Consensus 532 ~~~~-~~v~v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgI 606 (796)
..+. ....++..+..+ ++++.|++.|++.++|+||||.| +...+ ..+ ++.++|+++++|||-|
T Consensus 73 ~~~~~~~~~~~~~v~~G---~p~~~I~~~A~~~~aDLIVmG~~-~~~~~-------~~~-~va~~V~~~s~~pVLv 136 (142)
T PRK09982 73 LTKNIQWPKTKLRIERG---EMPETLLEIMQKEQCDLLVCGHH-HSFIN-------RLM-PAYRGMINKMSADLLI 136 (142)
T ss_pred HHHhcCCCcceEEEEec---CHHHHHHHHHHHcCCCEEEEeCC-hhHHH-------HHH-HHHHHHHhcCCCCEEE
Confidence 3322 233456666665 89999999999999999999976 43221 124 3899999999999866
No 35
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.77 E-value=6e-08 Score=104.28 Aligned_cols=279 Identities=19% Similarity=0.314 Sum_probs=157.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhHH---hcchh---HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHH
Q 003770 92 VLDTLANLGLIFFMFLVGLELDPKSLR---QTGKK---ALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV 165 (796)
Q Consensus 92 ~l~~l~~lgl~~~lF~~Gle~d~~~l~---~~~~~---~~~ia~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~ 165 (796)
..+.+.+--+.+|.|.+|+|+..+.+. ++.|| ...-++.|+++|.++=. .+... .+ ...--+|+
T Consensus 55 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalIyl----~~n~~--~~----~~~~GW~I 124 (378)
T PF06965_consen 55 LHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALIYL----AFNAG--GP----EAAHGWAI 124 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHG----GG--S--ST----THHHHTSS
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHHHh----eeecC--CC----CcCceEEe
Confidence 445556666678899999998766553 23333 24556778888864322 12111 00 01222332
Q ss_pred HHhhccHHHHHHHHHhc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHhhHH
Q 003770 166 ALSITAFPVLARILAEL-KLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPP 244 (796)
Q Consensus 166 ~ls~Ts~~vv~~iL~el-~ll~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~ 244 (796)
- ..|+.+....++.=+ +..+..+...+++-+++||+.++++.+++.+ ++ ....+.......+ ++.
T Consensus 125 P-~ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt---~~---i~~~~L~~a~~~~-~~l------ 190 (378)
T PF06965_consen 125 P-MATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT---DG---ISLLWLLLAAAAL-LLL------ 190 (378)
T ss_dssp S-S---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS-----------HHHHHHHHHHH-HHH------
T ss_pred c-ccccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC---CC---CCHHHHHHHHHHH-HHH------
Confidence 2 235555555555433 3367778899999999999999988886653 21 2223322222211 111
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCCh--------hHHHHHHHHHHHHH
Q 003770 245 TFKWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPF--------ANALVEKVEDLVSG 316 (796)
Q Consensus 245 ~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~~~~~--------~~~l~~kl~~~~~~ 316 (796)
+..+|.. .+....+..+.. +.-+.....|+|+.++..+.|+++|..++. .+++++++++.++.
T Consensus 191 ---~~l~r~~----v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~~ 261 (378)
T PF06965_consen 191 ---FVLNRLG----VRSLWPYLLLGI--LLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVAF 261 (378)
T ss_dssp ---HHHHHTT-------THHHHHHHH--HHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHHH
T ss_pred ---HHHHHCC----CceehHHHHHHH--HHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhhh
Confidence 2233321 222333333333 233455678999999999999999975444 24788889999988
Q ss_pred HHHHHH-HhhhhccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhhhhHH
Q 003770 317 IFLPLY-FVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILMNTKGL 385 (796)
Q Consensus 317 ~~~Plf-F~~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~----------~~~~~e~~~lgl~l~~kG~ 385 (796)
+.+|+| |.-.|..++-..+... .-.....+++..++||.+|.+..++.. +++|++-...|++-+.-=+
T Consensus 262 ~IlPlFAlaNAGV~l~~~~~~~~-~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~LaGIGFT 340 (378)
T PF06965_consen 262 VILPLFALANAGVSLSGSSLGDL-TSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGLLAGIGFT 340 (378)
T ss_dssp THHHHHHHHHS----SSS---TH-HHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHHHTT--HH
T ss_pred hhHHhHhheeCceEEecCchHhh-hChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999 9999998886554321 222234456778889999988877653 3578887778885444447
Q ss_pred HHHHHHHhhhccCCCChhH
Q 003770 386 VELIVLNIGKDRKVLNDQV 404 (796)
Q Consensus 386 ~~l~l~~~~~~~~~i~~~~ 404 (796)
+++.+.+.+++.....++.
T Consensus 341 mSLFIa~LAF~~~~~~~~a 359 (378)
T PF06965_consen 341 MSLFIAGLAFDDPALQNAA 359 (378)
T ss_dssp HHHHHHHHHSTT-SSHHHH
T ss_pred HHHHHHHHHcCChhhhhHH
Confidence 8888888888874433333
No 36
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.75 E-value=1.9e-06 Score=89.05 Aligned_cols=257 Identities=19% Similarity=0.283 Sum_probs=158.3
Q ss_pred HHHHHHHHhhccCchhHH---hcchhH---HHHHHHHHHHHHHHHHHHHHHHHhhh---ccCCchhHHHHHHHHHHhhcc
Q 003770 101 LIFFMFLVGLELDPKSLR---QTGKKA---LGIAIAGISLPFALGIGSSFLLRETI---SKGVDSTSFLVFMGVALSITA 171 (796)
Q Consensus 101 l~~~lF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~i~~~~~~~~~~~l~~~~---~~~~~~~~~~l~lg~~ls~Ts 171 (796)
...+.+.+|+|+..+.+. ++++++ ..-++.|++.|.++ +..+...- ..+|. +-+.|+
T Consensus 71 MAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAli----y~~~n~~~p~~~~GWa----------IP~ATD 136 (390)
T COG3004 71 MAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALI----YLALNAGDPATLEGWA----------IPMATD 136 (390)
T ss_pred HHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhH----hheeecCChhhhcCcC----------cccHHH
Confidence 345777899999887775 344443 34455677777542 22222111 11221 122344
Q ss_pred HHHHHHHHHhc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 003770 172 FPVLARILAEL-KLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFKWMA 250 (796)
Q Consensus 172 ~~vv~~iL~el-~ll~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~ 250 (796)
.+....+++=+ +..++.+.-..++-+++||+-+++..++... .+ .+..+.....+++ .+.. ..
T Consensus 137 iAFAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt---~~---Ls~~al~~a~~~i-~vL~---------~l 200 (390)
T COG3004 137 IAFALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT---TD---LSMAALGIAALAI-AVLA---------VL 200 (390)
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc---CC---ccHHHHHHHHHHH-HHHH---------HH
Confidence 44444444433 4578889999999999999999988876552 22 2222222222111 1111 12
Q ss_pred HHhcCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCC----ChhHHHHHHHHHHHHHHHHHHH-Hhh
Q 003770 251 RQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEG----PFANALVEKVEDLVSGIFLPLY-FVS 325 (796)
Q Consensus 251 ~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~~~----~~~~~l~~kl~~~~~~~~~Plf-F~~ 325 (796)
+|.. ++....++++..++..+. ..-|+|..++..+.|+.+|-.. +.-+++++.+.+.+..+.+|+| |.-
T Consensus 201 N~~~----v~~l~~Y~~~gviLW~~v--lkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlPlFaFaN 274 (390)
T COG3004 201 NRLG----VRRLSPYLLVGVILWIAV--LKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILPLFAFAN 274 (390)
T ss_pred HHhC----chhhhHHHHHHHHHHHHH--HHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHHHHHHcc
Confidence 2211 223344455555554433 4679999999999999999533 3346777788888888999999 888
Q ss_pred hhcccc---chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhhhhHHHHHHHHH
Q 003770 326 SGLKTN---IATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILMNTKGLVELIVLN 392 (796)
Q Consensus 326 ~G~~~d---l~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~----------~~~~~e~~~lgl~l~~kG~~~l~l~~ 392 (796)
.|.+++ ...+.+ .+...+++..+++|.+|++..++.. +.+|++-...+++-+.-=++++.+..
T Consensus 275 AGvsl~g~~~~~l~s----~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGIGFTMSlFI~~ 350 (390)
T COG3004 275 AGVSLQGVSLSGLTS----PLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTMSLFIAS 350 (390)
T ss_pred CCccccccccccccc----chHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhhhHHHHHHHHH
Confidence 998876 333332 3345667788899999998887753 46888888888743333367778877
Q ss_pred hhhcc
Q 003770 393 IGKDR 397 (796)
Q Consensus 393 ~~~~~ 397 (796)
.+++.
T Consensus 351 LAf~~ 355 (390)
T COG3004 351 LAFGS 355 (390)
T ss_pred HhcCC
Confidence 77765
No 37
>PRK10116 universal stress protein UspC; Provisional
Probab=98.62 E-value=2.8e-07 Score=87.72 Aligned_cols=134 Identities=10% Similarity=0.058 Sum_probs=86.8
Q ss_pred ceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHH
Q 003770 452 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEA 531 (796)
Q Consensus 452 lriLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 531 (796)
.+||++++..++...++..+..++.. ...+++++|+++..............+.. ....++..+.+++
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA~~---~~a~l~ll~v~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~ 71 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIARP---VNGKISLITLASDPEMYNQFAAPMLEDLR---------SVMQEETQSFLDK 71 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHHHH---hCCEEEEEEEccCcccchhhhHHHHHHHH---------HHHHHHHHHHHHH
Confidence 57999999999989999998888754 56788999998653211111000000000 0111223334455
Q ss_pred hhhccCeEEE-EeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEe
Q 003770 532 FQQLSRVSVR-PMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILI 608 (796)
Q Consensus 532 ~~~~~~v~v~-~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgIlv 608 (796)
+.+..+++.. ... ...+..+.|++.|++.++||||+|.|++..... +.++..+|++++||||-|+-
T Consensus 72 ~~~~~~~~~~~~~~---~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~--------~~s~a~~v~~~~~~pVLvv~ 138 (142)
T PRK10116 72 LIQDADYPIEKTFI---AYGELSEHILEVCRKHHFDLVICGNHNHSFFSR--------ASCSAKRVIASSEVDVLLVP 138 (142)
T ss_pred HHHhcCCCeEEEEE---ecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHH--------HHHHHHHHHhcCCCCEEEEe
Confidence 5444455443 233 235889999999999999999999997743221 23678899999999987753
No 38
>PRK11175 universal stress protein UspE; Provisional
Probab=98.55 E-value=1.8e-07 Score=101.21 Aligned_cols=143 Identities=15% Similarity=0.102 Sum_probs=90.8
Q ss_pred cceEEEEeecCCCh-------hhHHHHHHHhccCCCCC-CceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCc
Q 003770 451 QFRILACFHSARNI-------PSTINLLEALRGIQKSE-GLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNP 522 (796)
Q Consensus 451 elriLv~v~~~~~~-------~~li~ll~~~~~~~~~~-p~~v~~lhlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~ 522 (796)
..+||++++..+.. ..+++.+..++.. . ...++++|+.+............. ......+ ...
T Consensus 152 ~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~---~~~a~l~ll~v~~~~~~~~~~~~~~~---~~~~~~~----~~~ 221 (305)
T PRK11175 152 GGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQ---LNHAEVHLVNAYPVTPINIAIELPEF---DPSVYND----AIR 221 (305)
T ss_pred CCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhh---CcCCceEEEEEecCcchhcccccccc---chhhHHH----HHH
Confidence 35899999976543 4578888877743 3 567899999875432110000000 0000000 111
Q ss_pred chHHHHHHHhhhccCeEEE-EeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCC
Q 003770 523 NHIVVAFEAFQQLSRVSVR-PMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAP 601 (796)
Q Consensus 523 ~~i~~af~~~~~~~~v~v~-~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~Ap 601 (796)
++..+.++++.+..+++.. ..+.. .+..+.|++.|++.++|+|+||.|++.+..+.+ +|++.++|++++|
T Consensus 222 ~~~~~~l~~~~~~~~~~~~~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~l------lGS~a~~v~~~~~ 292 (305)
T PRK11175 222 GQHLLAMKALRQKFGIDEEQTHVEE---GLPEEVIPDLAEHLDAELVILGTVGRTGLSAAF------LGNTAEHVIDHLN 292 (305)
T ss_pred HHHHHHHHHHHHHhCCChhheeecc---CCHHHHHHHHHHHhCCCEEEECCCccCCCccee------ecchHHHHHhcCC
Confidence 2233445555544444432 33333 478899999999999999999999887665544 7899999999999
Q ss_pred CceEEEecCCC
Q 003770 602 CSVGILIDRGL 612 (796)
Q Consensus 602 csVgIlvdrg~ 612 (796)
|||.++.++|+
T Consensus 293 ~pVLvv~~~~~ 303 (305)
T PRK11175 293 CDLLAIKPDGY 303 (305)
T ss_pred CCEEEEcCCCC
Confidence 99987656665
No 39
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.54 E-value=6.4e-07 Score=82.75 Aligned_cols=129 Identities=23% Similarity=0.264 Sum_probs=90.8
Q ss_pred eEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHHh
Q 003770 453 RILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAF 532 (796)
Q Consensus 453 riLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 532 (796)
++|+|+++++....+++.+..++.. ...+++++|+.+-.+........+. ..+.++.++.+...
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~---~~~~i~~l~v~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~ 64 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARR---LGAELVLLHVVDPPPSSAAELAELL-------------EEEARALLEALREA 64 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHh---cCCEEEEEEEecCCCCcchhHHHHH-------------HHHHHHHHHHHHHH
Confidence 5899999999999999999999854 5788999999875544321000000 01123444444444
Q ss_pred hhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEE
Q 003770 533 QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 606 (796)
Q Consensus 533 ~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgI 606 (796)
....+++++.....+ +..++|++.+++.++|++|+|++++....+. .+++..+++++++||||-+
T Consensus 65 ~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~------~~~~~~~~ll~~~~~pvli 129 (130)
T cd00293 65 LAEAGVKVETVVLEG---DPAEAILEAAEELGADLIVMGSRGRSGLRRL------LLGSVAERVLRHAPCPVLV 129 (130)
T ss_pred HhcCCCceEEEEecC---CCHHHHHHHHHHcCCCEEEEcCCCCCcccee------eeccHHHHHHhCCCCCEEe
Confidence 334567777766655 3489999999999999999999887543322 3677888999999999865
No 40
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.16 E-value=1.2e-05 Score=76.69 Aligned_cols=133 Identities=15% Similarity=0.216 Sum_probs=80.6
Q ss_pred EEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEeeecccccCCccc---cCC---cCccccHHHHHHHHHhhcCCCCce
Q 003770 626 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVS---VDM---AGNASMDEEVLSEFKLKTSRNGSV 699 (796)
Q Consensus 626 ~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~~~~~~~~~~~---~~~---~~~~~~d~~~~~~~~~~~~~~~~v 699 (796)
+|++++.|.+..+.|+.+|.++|+..+.+++++++++.......... ..+ ++.++..++.+++++.... ...+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 79 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCS-RKGV 79 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCC
Confidence 48999999999999999999999999999999999864321100000 000 0001122345555554432 1234
Q ss_pred EEEEEEec--ChHHHHHHHHhccC--CCEEEEccCCCchhhcccccCCCCCccc-cchhhhccCCCCc-eeEEEEee
Q 003770 700 RYEERLVR--NTAETIAVIREVSR--CNLLLVGRMPDGELALALSTRSDCLELG-PVGSLLTSLEFST-ASVLIIQQ 770 (796)
Q Consensus 700 ~~~e~~v~--~~~~~~~~l~~~~~--~DL~iVGr~~~~~~~~gl~~w~e~~eLG-~igd~las~d~~~-~SvLvvqq 770 (796)
.+...++. +..+ .+++..++ .||+|+|+++ ..|+..+ -+| -+.+.+.-.- .+ .+|||||.
T Consensus 80 ~~~~~~~~g~~~~~--~I~~~a~~~~~dlIV~Gs~g----~~~l~~~----~~gssva~~Vi~~a-~~~c~Vlvv~~ 145 (146)
T cd01989 80 QCEDVVLEDDDVAK--AIVEYVADHGITKLVMGASS----DNHFSMK----FKKSDVASSVLKEA-PDFCTVYVVSK 145 (146)
T ss_pred eEEEEEEeCCcHHH--HHHHHHHHcCCCEEEEeccC----CCceeec----ccCCchhHHHHhcC-CCCceEEEEeC
Confidence 44444443 3333 34443333 8999999998 4444432 355 5778777543 32 59999984
No 41
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=98.06 E-value=2.9e-05 Score=74.24 Aligned_cols=142 Identities=18% Similarity=0.248 Sum_probs=91.0
Q ss_pred ceEEEEee-cCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHH
Q 003770 452 FRILACFH-SARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFE 530 (796)
Q Consensus 452 lriLv~v~-~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~ 530 (796)
.+++++++ +.+........+...+.. ....++++++++..+............. ............++..+..+
T Consensus 6 ~~il~~~d~~s~~~~~a~~~a~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 80 (154)
T COG0589 6 KKILVAVDVGSEAAEKALEEAVALAKR---LGAPLILLVVIDPLEPTALVSVALADAP--IPLSEEELEEEAEELLAEAK 80 (154)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHHHh---cCCeEEEEEEecccccccccccccccch--hhhhHHHHHHHHHHHHHHHH
Confidence 57899998 888778788777777654 4555678888765543322110000000 00000000022355566666
Q ss_pred HhhhccCeE-EEEeEEecCCCCh-HHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEE
Q 003770 531 AFQQLSRVS-VRPMTAISSMSDM-HEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGIL 607 (796)
Q Consensus 531 ~~~~~~~v~-v~~~~~vs~~~~m-~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgIl 607 (796)
...+..++. ++.....+ +. .+.|+..|.+.++|+|+||.+++++.++. .+|++.++|++++||||-++
T Consensus 81 ~~~~~~~~~~~~~~~~~g---~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~------llGsvs~~v~~~~~~pVlvv 150 (154)
T COG0589 81 ALAEAAGVPVVETEVVEG---SPSAEEILELAEEEDADLIVVGSRGRSGLSRL------LLGSVAEKVLRHAPCPVLVV 150 (154)
T ss_pred HHHHHcCCCeeEEEEecC---CCcHHHHHHHHHHhCCCEEEECCCCCccccce------eeehhHHHHHhcCCCCEEEE
Confidence 665555555 45555555 55 69999999999999999999988766553 38899999999999998653
No 42
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=98.02 E-value=3.7e-05 Score=71.72 Aligned_cols=130 Identities=15% Similarity=0.161 Sum_probs=75.1
Q ss_pred EEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEeeecccccCCccccCCcCccccHHHHHHHHHhhcCC-CCceEEEEE
Q 003770 626 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSR-NGSVRYEER 704 (796)
Q Consensus 626 ~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~v~~~e~ 704 (796)
||+++..|.++.+.++++|.+||+.++.+++++++.+....... ...+...+..++.++.++..... +-.+.+...
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 77 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSP---SQLEVNVQRARKLLRQAERIAASLGVPVHTIIR 77 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCc---chhHHHHHHHHHHHHHHHHHhhhcCCceEEEEE
Confidence 68999999999999999999999999999999999864321100 00011112223444444443321 112222221
Q ss_pred EecChH-HHHHHHHhccCCCEEEEccCCCchhhcccccCCCCCccccchhhhccCCCCceeEEEEe
Q 003770 705 LVRNTA-ETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQ 769 (796)
Q Consensus 705 ~v~~~~-~~~~~l~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~SvLvvq 769 (796)
.-.+.. ++.+..++ .+.||+++|+++.+ ++ ...-+|-.-+-+...- . .+||||+
T Consensus 78 ~~~~~~~~I~~~a~~-~~~dlIV~G~~~~~----~~----~~~~lGs~~~~v~~~~-~-~pvlvv~ 132 (132)
T cd01988 78 IDHDIASGILRTAKE-RQADLIIMGWHGST----SL----RDRLFGGVIDQVLESA-P-CDVAVVK 132 (132)
T ss_pred ecCCHHHHHHHHHHh-cCCCEEEEecCCCC----Cc----cceecCchHHHHHhcC-C-CCEEEeC
Confidence 112332 22232222 22999999999822 22 2234777777777521 1 5888874
No 43
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=97.99 E-value=2e-05 Score=73.47 Aligned_cols=135 Identities=18% Similarity=0.208 Sum_probs=78.2
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEeeecccccCCccccCCcCccccHHHHHHHH---HhhcCCCCceE
Q 003770 624 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEF---KLKTSRNGSVR 700 (796)
Q Consensus 624 ~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~~~~~v~ 700 (796)
.+||++++.|.++.+.|+.+|.++|++.+.+++++++.+...................++....+. ...........
T Consensus 2 ~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (140)
T PF00582_consen 2 YKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEEAEAEGGIVI 81 (140)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHHHhhhcccee
Confidence 469999999999999999999999999999999999997543220000000000000000000000 00001122344
Q ss_pred EEEEEecChHHHHHHHHhccCCCEEEEccCCCchhhcccccCCCCCccccchhhhccCCCCceeEEEE
Q 003770 701 YEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLII 768 (796)
Q Consensus 701 ~~e~~v~~~~~~~~~l~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~SvLvv 768 (796)
+......+..+.+....+..++||+|+|+++ ..++.+| -+|-+.+-++.. .. .+||||
T Consensus 82 ~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~----~~~~~~~----~~gs~~~~l~~~-~~-~pVlvv 139 (140)
T PF00582_consen 82 EVVIESGDVADAIIEFAEEHNADLIVMGSRG----RSGLERL----LFGSVAEKLLRH-AP-CPVLVV 139 (140)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCSEEEEESSS----TTSTTTS----SSHHHHHHHHHH-TS-SEEEEE
T ss_pred EEEEEeeccchhhhhccccccceeEEEeccC----CCCccCC----CcCCHHHHHHHc-CC-CCEEEe
Confidence 4555556665543333333349999999998 3333333 278888887762 22 588887
No 44
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=97.95 E-value=0.0026 Score=67.18 Aligned_cols=254 Identities=14% Similarity=0.107 Sum_probs=141.9
Q ss_pred HHHHHHHHhhccCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHH
Q 003770 101 LIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILA 180 (796)
Q Consensus 101 l~~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~ 180 (796)
+..++|-.|-++|++...+..||...+-+.-+.+..+++..+..+++.. .......+.+-++++.|--..=..+..
T Consensus 51 l~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~----g~~Gls~laiiaa~~~~Ng~ly~al~~ 126 (312)
T PRK12460 51 LGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAE----GIFGLSGLAIVAAMSNSNGGLYAALMG 126 (312)
T ss_pred HHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCcc----cccchHHHHHHHHHhcCcHHHHHHHHH
Confidence 4568899999999999988888888887888888888888777776532 112234566666777777777777788
Q ss_pred hcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCcc
Q 003770 181 ELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPVE 260 (796)
Q Consensus 181 el~ll~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~ 260 (796)
|.+ -++|.|-.. ...++| ++. ..++. +... ++. +.|
T Consensus 127 ~yG-~~~d~gA~~--~~sl~~------------------GPf---~tm~a---Lga~----------gLA-~ip------ 162 (312)
T PRK12460 127 EFG-DERDVGAIS--ILSLND------------------GPF---FTMLA---LGAA----------GLA-NIP------ 162 (312)
T ss_pred HcC-CHhhhhHHh--hhhhcc------------------CcH---HHHHH---HHHH----------HHh-cCC------
Confidence 888 455555322 111222 111 11111 0000 010 000
Q ss_pred hHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhh
Q 003770 261 ETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQS 340 (796)
Q Consensus 261 e~~~~~~l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~ 340 (796)
.. .+ -+.+=+++.|+++.| +.+.+.+.++.-. .+.+|+|-+..|.++|+.++.+. .
T Consensus 163 -~~---~l---------------v~lilpILiGmilGN---ld~~~~~~l~~Gi-~f~I~f~~f~LG~~lnl~~I~~~-G 218 (312)
T PRK12460 163 -IM---AL---------------VAALLPLVLGMILGN---LDPDMRKFLTKGG-PLLIPFFAFALGAGINLSMLLQA-G 218 (312)
T ss_pred -hH---HH---------------HHHHHHHHHHHHHhc---cchhhHHHHhccc-eEeHHHHHHHhcCCeeHHHHHHh-C
Confidence 00 00 012334566666665 2223344444443 45889999999999999988642 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH--HHhhhhHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHHh
Q 003770 341 WGLLALVILTACLGKIVGTFVVSLSFKVPLREALALG--ILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFM 418 (796)
Q Consensus 341 ~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~e~~~lg--l~l~~kG~~~l~l~~~~~~~~~i~~~~~~~lvl~~lv~t~i 418 (796)
+. .+++.+..++.-...+++..+++|.+.+-+..++ ..-+.-|-..++.+.-.. +. -.+..+..|.+.++.|.+
T Consensus 219 ~~-GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgpAAVaAadP~~--~~-~~~~Ataqvaa~vivTai 294 (312)
T PRK12460 219 LA-GILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATPLAIAAADPSL--AP-VAAAATAQVAASVIVTAI 294 (312)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHHHHHHHhchhH--HH-HHHHHHHHHHHHHHHHHH
Confidence 22 2222233344455666666788898888777777 433333322222222222 11 124455555666666666
Q ss_pred HHHHHH-HHhhhh
Q 003770 419 TTPLVM-AVYKPA 430 (796)
Q Consensus 419 ~~pl~~-~l~~~~ 430 (796)
..|++. |++|+.
T Consensus 295 l~P~~t~~~~k~~ 307 (312)
T PRK12460 295 LTPLLTSWVAKKE 307 (312)
T ss_pred HHHHHHHHHHHHh
Confidence 666554 555543
No 45
>PRK09982 universal stress protein UspD; Provisional
Probab=97.85 E-value=3.2e-05 Score=73.67 Aligned_cols=40 Identities=18% Similarity=0.158 Sum_probs=37.4
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEeeec
Q 003770 624 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLA 663 (796)
Q Consensus 624 ~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~~ 663 (796)
.++|++++.|.++.+.|++.|.++|+..+++++++++++.
T Consensus 3 ~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~ 42 (142)
T PRK09982 3 YKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDG 42 (142)
T ss_pred ceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccC
Confidence 4699999999999999999999999999999999999854
No 46
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=97.83 E-value=0.044 Score=60.78 Aligned_cols=303 Identities=18% Similarity=0.205 Sum_probs=156.8
Q ss_pred CCChhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhcchhHHHHHHHHHHH
Q 003770 55 RQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISL 134 (796)
Q Consensus 55 ~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~i 134 (796)
.+|.++--++.|+++.. +|.++ ++...+..+.+.+..+-+-+++.=++.|++.++|.++|.+.. +..-.+
T Consensus 24 ~l~~~vl~~~~~~~lsn--lgli~-------~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~-F~~~~~ 93 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSN--LGLID-------SPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLA-FLIGAV 93 (378)
T ss_pred hcCHHHHHHHHHHHHHH--CCCcC-------CCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHH-HHHHHH
Confidence 37888888888999886 34331 123456788888888888888888899999999999887643 333344
Q ss_pred HHHHHHHHHHHHHhhh-ccCCchhH-HHHHHHHHH-hhccHHHHHHHHHhcCccCChhHHHHHHHHHHHH-HHHHHHHHH
Q 003770 135 PFALGIGSSFLLRETI-SKGVDSTS-FLVFMGVAL-SITAFPVLARILAELKLLTADVGRMAMSAAAVND-VAAWILLAL 210 (796)
Q Consensus 135 ~~~~~~~~~~~l~~~~-~~~~~~~~-~~l~lg~~l-s~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~D-~~~~~ll~i 210 (796)
..++|..+++.+.... .++ .|. .+.+.|.-. -..-+..+... ++. + .-.+++++.-| +..-+.+.+
T Consensus 94 g~viG~~va~~l~~~~l~~~--~wk~ag~l~gsyiGGs~N~~Av~~a---l~~---~--~~~~~a~~aaDnv~~~~~~~~ 163 (378)
T PF05684_consen 94 GTVIGAVVAFLLFGGFLGPE--GWKIAGMLAGSYIGGSVNFVAVAEA---LGV---S--DSLFAAALAADNVVMALWFAF 163 (378)
T ss_pred HHHHHHHHHHHHHhhcccch--HHHHHHHHHhcccCchhHHHHHHHH---HCC---C--HHHHHHHHHHHHHHHHHHHHH
Confidence 4555666655554432 211 121 122222111 01112223332 331 1 23444444444 443333443
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHH--hcCCCCcchHHHHHHHHHHHHHHHHHHHh
Q 003770 211 AVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTF-------KWMARQ--CHEGEPVEETYVCATLAAVLAAGFITDAI 281 (796)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~-------~~i~~~--~~~~~~~~e~~~~~~l~~~l~~~~~ae~~ 281 (796)
...+...... ..-| .+|-- .-..+. ..++++.. ..+...+...+....+++.+
T Consensus 164 l~~l~~~~~~--~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~la~a~~v~~~s~~l 225 (378)
T PF05684_consen 164 LLALPPFARK--FDRW---------------TKADTSSIEALEEEIEAEEAEWARKPIS-QDLAFLLAVAFAVVALSHAL 225 (378)
T ss_pred HHHHhhhhHH--hhhc---------------cCCCccccchhhhhhhhhhhccccCCcH-hHHHHHHHHHHHHHHHHHHH
Confidence 3333220000 0000 00000 000000 00011111 22333444444333333322
Q ss_pred ch-------------hHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhHHHHHHHH
Q 003770 282 GI-------------HAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVI 348 (796)
Q Consensus 282 g~-------------~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~i~ 348 (796)
+- -.++-....|++.. -+|..+.+ .--+.+. .+++=+||..+|++.|+..+.+.. ..+++.
T Consensus 226 a~~l~~~~~~~~~~~~~il~~tt~~l~~~-~~~~~~~l-~g~~~lg-~~lly~ffa~IGa~a~i~~l~~ap---~~~l~~ 299 (378)
T PF05684_consen 226 AAWLPPLFAGISSSTWLILTVTTLGLATS-FPPFRKLL-RGASELG-TFLLYLFFAVIGASADISELLDAP---SLFLFG 299 (378)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHh-ccchhhcC-CchHHHH-HHHHHHHHHHHccccCHHHHHHhH---HHHHHH
Confidence 21 13344455566655 35555544 3445554 677778999999999999887522 233344
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCCh
Q 003770 349 LTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLND 402 (796)
Q Consensus 349 ~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~ 402 (796)
++.+..-.+..+..++++|+|+.+...-+- -|.-|-.+......+++..+..+
T Consensus 300 ~i~l~iH~~l~l~~~kl~k~~l~~~~vAS~-AnIGGpaTA~a~A~a~~~~Lv~p 352 (378)
T PF05684_consen 300 FIILAIHLLLMLILGKLFKIDLFELLVASN-ANIGGPATAPAVAAAKGPSLVPP 352 (378)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHhh-cccCCcchHHHHHHhcCCccHHH
Confidence 555667777888899999999987666555 56666666555555555444433
No 47
>PRK10116 universal stress protein UspC; Provisional
Probab=97.77 E-value=6.7e-05 Score=71.23 Aligned_cols=129 Identities=12% Similarity=0.105 Sum_probs=73.7
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEeeecccccCCcccc-CCcCcccc---HHHHHHHHHhhcCCCCce
Q 003770 624 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSV-DMAGNASM---DEEVLSEFKLKTSRNGSV 699 (796)
Q Consensus 624 ~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~~~~~~~~~~~~-~~~~~~~~---d~~~~~~~~~~~~~~~~v 699 (796)
.+||++++.+.++.+.||++|.++|+..+++++++++.+........... .++.+++. -++.++++..+. .+
T Consensus 3 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~ 78 (142)
T PRK10116 3 YSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQDA----DY 78 (142)
T ss_pred CceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----CC
Confidence 47999999999999999999999999999999999997432100000000 00000111 123344433332 12
Q ss_pred EEEEEEecChHHHHHHHHhccC--CCEEEEccCCCchhhcccccCCCCCccccchhhhccCCCCc-eeEEEEe
Q 003770 700 RYEERLVRNTAETIAVIREVSR--CNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQ 769 (796)
Q Consensus 700 ~~~e~~v~~~~~~~~~l~~~~~--~DL~iVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~-~SvLvvq 769 (796)
......+..|.....+++..++ +||+|+|+++ .++++.| +-..+-++. .+ .+||||-
T Consensus 79 ~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~----~~~~~~~------~s~a~~v~~---~~~~pVLvv~ 138 (142)
T PRK10116 79 PIEKTFIAYGELSEHILEVCRKHHFDLVICGNHN----HSFFSRA------SCSAKRVIA---SSEVDVLLVP 138 (142)
T ss_pred CeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCc----chHHHHH------HHHHHHHHh---cCCCCEEEEe
Confidence 2222334444444455565543 9999999998 3344433 122344433 23 6888874
No 48
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=97.72 E-value=0.00021 Score=66.05 Aligned_cols=121 Identities=16% Similarity=0.103 Sum_probs=71.5
Q ss_pred EEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEeeecccccCCccccCCcCccccHHHHHHHHHhhcCCCCceEEEEEE
Q 003770 626 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERL 705 (796)
Q Consensus 626 ~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~~~e~~ 705 (796)
||++++.|.+..++|+.+|.++|++.+.+++++++.+.+... ..+..++.++++++.... ..+.+....
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~----------~~~~~~~~l~~~~~~~~~-~~~~~~~~~ 69 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNR----------LSEAERRRLAEALRLAEE-LGAEVVTLP 69 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCcccc----------CCHHHHHHHHHHHHHHHH-cCCEEEEEe
Confidence 689999999999999999999999999999999998654311 011123445555543321 123332222
Q ss_pred ecChHHHHHHHHhccC--CCEEEEccCCCchhhcccccCCCCCccccchhhhccCCCCceeEEEE
Q 003770 706 VRNTAETIAVIREVSR--CNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLII 768 (796)
Q Consensus 706 v~~~~~~~~~l~~~~~--~DL~iVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~SvLvv 768 (796)
-.+..+ .+.+..++ .|++++|.++.+ ++.++ -+|-..+-+...--. ..|||+
T Consensus 70 ~~~~~~--~I~~~~~~~~~dllviG~~~~~----~~~~~----~~Gs~~~~v~~~a~~-~~v~v~ 123 (124)
T cd01987 70 GDDVAE--AIVEFAREHNVTQIVVGKSRRS----RWREL----FRGSLVDRLLRRAGN-IDVHIV 123 (124)
T ss_pred CCcHHH--HHHHHHHHcCCCEEEeCCCCCc----hHHHH----hcccHHHHHHHhCCC-CeEEEe
Confidence 223333 23333322 999999999822 22221 356666665544312 356664
No 49
>PRK15005 universal stress protein F; Provisional
Probab=97.69 E-value=0.00022 Score=67.84 Aligned_cols=132 Identities=12% Similarity=0.102 Sum_probs=75.5
Q ss_pred ceEEEEeccCCcCh--HHHHHHHHHHhcCCCeEEEEEEeeecccccCCc---cccCC---cCccccHHHHHHHHHhhcCC
Q 003770 624 SYTITVLFFGGRDD--REALACGARMAEHPGISFIVIRFLLAADAIGNT---VSVDM---AGNASMDEEVLSEFKLKTSR 695 (796)
Q Consensus 624 ~~~i~~~f~GG~dd--reAL~~a~rma~~~~v~ltvv~~~~~~~~~~~~---~~~~~---~~~~~~d~~~~~~~~~~~~~ 695 (796)
.++|++++.|.+++ +.|+++|.++|+..+.+++++++++........ ...+. +..++..++.++++..+...
T Consensus 2 ~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (144)
T PRK15005 2 NRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKL 81 (144)
T ss_pred CccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhCC
Confidence 36899999999884 799999999999999999999998642110000 00000 00011112344555544322
Q ss_pred CCceEEEEEEecChHHHHHHHHhcc--CCCEEEEccCCCchhhcccccCCCCCccccchhhhccCCCCceeEEEE
Q 003770 696 NGSVRYEERLVRNTAETIAVIREVS--RCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLII 768 (796)
Q Consensus 696 ~~~v~~~e~~v~~~~~~~~~l~~~~--~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~SvLvv 768 (796)
..+.+. ..+..|.-...+++..+ ++||+|+|+++ .|+.+| =+|-..+-+...- . .+||||
T Consensus 82 -~~~~~~-~~v~~G~p~~~I~~~a~~~~~DLIV~Gs~~-----~~~~~~----llGS~a~~vl~~a-~-cpVlvV 143 (144)
T PRK15005 82 -PTDRVH-VHVEEGSPKDRILELAKKIPADMIIIASHR-----PDITTY----LLGSNAAAVVRHA-E-CSVLVV 143 (144)
T ss_pred -CCCceE-EEEeCCCHHHHHHHHHHHcCCCEEEEeCCC-----CCchhe----eecchHHHHHHhC-C-CCEEEe
Confidence 222222 22334433334444443 39999999875 134332 3677777776531 1 588887
No 50
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=97.62 E-value=0.00013 Score=69.47 Aligned_cols=38 Identities=11% Similarity=-0.027 Sum_probs=35.8
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 003770 624 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFL 661 (796)
Q Consensus 624 ~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~ 661 (796)
.+||+++..|.++.+.||.+|..+|+..+.+++++++.
T Consensus 3 ~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~ 40 (144)
T PRK15118 3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVD 40 (144)
T ss_pred ceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEc
Confidence 46999999999999999999999999999999999984
No 51
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.57 E-value=0.018 Score=60.74 Aligned_cols=171 Identities=18% Similarity=0.187 Sum_probs=105.2
Q ss_pred HHHHHHHHhhccCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccCCchhHHHHHHHHHHhhccHHHHHHHH
Q 003770 101 LIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETI-SKGVDSTSFLVFMGVALSITAFPVLARIL 179 (796)
Q Consensus 101 l~~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~i~~~~~~~~~~~l~~~~-~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL 179 (796)
+..++|-.|-++|++...+..||...+-+.-+.+..+++..+..+++..- ..+.......+.+-++++.+-...=..+.
T Consensus 51 ig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~ 130 (314)
T PF03812_consen 51 IGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALM 130 (314)
T ss_pred HHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHH
Confidence 45688999999999999999999998888888888888888877775421 00101224566666777777777777788
Q ss_pred HhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCc
Q 003770 180 AELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPV 259 (796)
Q Consensus 180 ~el~ll~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~ 259 (796)
.|.+ -++|.|-. +...++|.=.+.++.+-. .+..--
T Consensus 131 ~~yG-d~~D~gA~--~i~sl~~GPf~tMl~LG~-------------------------sG~a~i---------------- 166 (314)
T PF03812_consen 131 GQYG-DEEDVGAF--SILSLNDGPFFTMLALGA-------------------------SGLANI---------------- 166 (314)
T ss_pred HHhC-CHHHhHHH--HHHHhhhhHHHHHHHHhh-------------------------ccccCC----------------
Confidence 8877 35554422 222222222111111100 000000
Q ss_pred chHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhh
Q 003770 260 EETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGL 338 (796)
Q Consensus 260 ~e~~~~~~l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~ 338 (796)
.... +=+.+=+++.|+++.| +.+++.+-+.+-. ..++|+|-...|..+|+..+...
T Consensus 167 -p~~~------------------lv~~llP~iiG~iLGN---LD~~~r~fl~~~~-~~lIPF~~f~lGa~inl~~i~~a 222 (314)
T PF03812_consen 167 -PWMS------------------LVAALLPIIIGMILGN---LDPDFRKFLAPGV-PILIPFFGFALGAGINLSNIIKA 222 (314)
T ss_pred -CHHH------------------HHHHHHHHHHHHHHhc---CCHHHHHHHhcCC-CeeeehhhhhhcCCCCHHHHHHh
Confidence 0000 0023346777888875 4445555555554 78899999999999999887653
No 52
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=97.49 E-value=0.0004 Score=63.81 Aligned_cols=101 Identities=15% Similarity=0.224 Sum_probs=61.6
Q ss_pred EEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEeeecccccCCccccCCcCccccHHHHHHHHHhhcCCCCceEEEEEE
Q 003770 626 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERL 705 (796)
Q Consensus 626 ~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~~~e~~ 705 (796)
+|++++.+++..+.++..|.++|+..+.+++++++.+....... ...+.+.+..++.+++++.... ...+....+.
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~ 76 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAA---ELAELLEEEARALLEALREALA-EAGVKVETVV 76 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcch---hHHHHHHHHHHHHHHHHHHHHh-cCCCceEEEE
Confidence 58899999999999999999999999999999999864332100 0000112223456666666531 1123333333
Q ss_pred ecChHHHHHHHHhccC--CCEEEEccCC
Q 003770 706 VRNTAETIAVIREVSR--CNLLLVGRMP 731 (796)
Q Consensus 706 v~~~~~~~~~l~~~~~--~DL~iVGr~~ 731 (796)
. .+.....+.+..++ +|++|+|.++
T Consensus 77 ~-~~~~~~~i~~~~~~~~~dlvvig~~~ 103 (130)
T cd00293 77 L-EGDPAEAILEAAEELGADLIVMGSRG 103 (130)
T ss_pred e-cCCCHHHHHHHHHHcCCCEEEEcCCC
Confidence 3 22222233343333 8999999987
No 53
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.48 E-value=0.0012 Score=72.25 Aligned_cols=130 Identities=12% Similarity=0.051 Sum_probs=84.2
Q ss_pred ceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHH
Q 003770 452 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEA 531 (796)
Q Consensus 452 lriLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 531 (796)
.|||+|++++++...+++.+..++.. .....+++++|+++....... .... ....+++++..++
T Consensus 6 kkILVavDGSe~S~~Al~~AielA~~-~g~~AeL~lL~Vv~~~~~~~~---~~~~------------~~~~eelle~~~~ 69 (357)
T PRK12652 6 NRLLVPVADSVTVRQTVAYAVESAEE-AAETPTVHLVAAASGRAVDPE---GQDE------------LAAAEELLERVEV 69 (357)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHh-cCCCCEEEEEEEecCcccccc---hhHH------------HHHHHHHHHHHHH
Confidence 58999999999999999999988853 113589999999984321111 0000 0123344555544
Q ss_pred hhhc------cCeEEEEeEEec-----CCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcC
Q 003770 532 FQQL------SRVSVRPMTAIS-----SMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHA 600 (796)
Q Consensus 532 ~~~~------~~v~v~~~~~vs-----~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~A 600 (796)
..++ .++++++.+... ...+.++.|+++|++.++|+|||+=.-+... +.+.+|.+-.. |.++
T Consensus 70 ~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~~~------~~~~~~~~~~~-~~~~ 142 (357)
T PRK12652 70 WATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNPGG------TAPMLQPLERE-LARA 142 (357)
T ss_pred HHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCCCC------CCcccchHHHH-HHhc
Confidence 4332 478888777652 1148999999999999999999997544322 22335554433 5666
Q ss_pred CCce
Q 003770 601 PCSV 604 (796)
Q Consensus 601 pcsV 604 (796)
-|++
T Consensus 143 ~~~~ 146 (357)
T PRK12652 143 GITY 146 (357)
T ss_pred CCce
Confidence 6653
No 54
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=97.36 E-value=0.045 Score=59.26 Aligned_cols=155 Identities=12% Similarity=0.201 Sum_probs=87.5
Q ss_pred HHHHhhHHHHHHHHHHhc-CCCCcch------------------------H-HHHHHHHHHHHHHHHHHHhc-----hhH
Q 003770 237 CLTLFVPPTFKWMARQCH-EGEPVEE------------------------T-YVCATLAAVLAAGFITDAIG-----IHA 285 (796)
Q Consensus 237 ~~~~v~~~~~~~i~~~~~-~~~~~~e------------------------~-~~~~~l~~~l~~~~~ae~~g-----~~~ 285 (796)
..+.+..|+.+|+++|+. +..+.++ . .+.++...+...+++.+.++ +..
T Consensus 171 ~GgliGgpva~~li~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~i~i~~~vG~~i~~~l~~~~~~lP~ 250 (404)
T COG0786 171 AGGLIGGPVARWLIKKNKLKPDPTKDPDDDLVDVAFEGPKSTRLITAEPLIETLAIIAICLAVGKIINQLLKSLGLALPL 250 (404)
T ss_pred HhHhcCcHHHHHHHHhcCCCCCCCCCchhhcchhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccH
Confidence 345677899999998761 1111111 1 12333333344455666655 567
Q ss_pred HHHHHHHHhhcCCCCCh--hHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003770 286 MFGAFVVGVLVPKEGPF--ANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVS 363 (796)
Q Consensus 286 ~lgafvaGl~l~~~~~~--~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~ 363 (796)
..++++.|+++.+--+. ..++.++.-+...++-+-+|....=|++.+..+.+ -..++.+++.+-..+--+.+.+...
T Consensus 251 fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~-l~lpl~viL~vQ~i~m~lfa~fvtf 329 (404)
T COG0786 251 FVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELAD-LALPLLVILAVQTIVMALFAIFVTF 329 (404)
T ss_pred HHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999862111 11123333333346777778777778888887764 2334344444444444556667778
Q ss_pred HhcCCChHHHHHHHHHhh-hhHHHHHHHHH
Q 003770 364 LSFKVPLREALALGILMN-TKGLVELIVLN 392 (796)
Q Consensus 364 ~~~~~~~~e~~~lgl~l~-~kG~~~l~l~~ 392 (796)
+..|-++..+...+.-++ .-|...-++++
T Consensus 330 r~mG~~YdAaV~~~G~~G~gLGATPtAian 359 (404)
T COG0786 330 RLMGKNYDAAVLAAGHCGFGLGATPTAIAN 359 (404)
T ss_pred HHhCcchhHHHHhcccccCccCCcHHHHHh
Confidence 888888877776433222 22334444444
No 55
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=97.34 E-value=0.13 Score=56.93 Aligned_cols=90 Identities=17% Similarity=0.296 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHhhcCCC------CChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhHHHHHHHHHHHHHHHH
Q 003770 283 IHAMFGAFVVGVLVPKE------GPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKI 356 (796)
Q Consensus 283 ~~~~lgafvaGl~l~~~------~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~K~ 356 (796)
+....++++.|+++.+- ....++..+++. ++.+-+|.+..=+.+++..+.+ ...++.+.+++-.++.=+
T Consensus 247 lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~----~~sL~~fl~~almsl~l~~l~~-~a~Plliil~~q~i~~~~ 321 (368)
T PF03616_consen 247 LPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRIS----GISLDLFLAMALMSLKLWVLAD-YALPLLIILAVQTILMVL 321 (368)
T ss_pred CchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHH----HHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 45778999999999751 113344444444 4445555555556778877764 233333333333333444
Q ss_pred HHHHHHHHhcCCChHHHHHHHH
Q 003770 357 VGTFVVSLSFKVPLREALALGI 378 (796)
Q Consensus 357 ~~~~l~~~~~~~~~~e~~~lgl 378 (796)
...++..+.+|-++ |+..++.
T Consensus 322 f~~fv~fr~~gkdy-daavm~~ 342 (368)
T PF03616_consen 322 FAYFVTFRVMGKDY-DAAVMSA 342 (368)
T ss_pred HHHHHhhhhhCCCh-hHHHHhh
Confidence 55566677788876 5555444
No 56
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=97.32 E-value=0.32 Score=52.87 Aligned_cols=84 Identities=14% Similarity=0.171 Sum_probs=56.6
Q ss_pred hcccCCChhHHHHHHHHhcCccccCCchhhhccccCCCcH-HHHHHHHHHHHHHHHHHHhhccCchhHHhcchhHHHHHH
Q 003770 51 LRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQ-TVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAI 129 (796)
Q Consensus 51 l~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~-~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia~ 129 (796)
+++.+++..+--|+.|+++|+......+ +.. ..+. -.-+.+-.+|.+ +.|.+++++++.+.+.+.+.+..
T Consensus 26 ~~~~~l~~~~~AillG~~l~n~~~~~~~---~~~--~~Gi~f~~k~lLr~gIV----LlG~~l~~~~i~~~G~~~l~~~~ 96 (335)
T TIGR00698 26 LADPALSALFLAILLGMVAGNTIYPQRD---EEK--KRGVLFAKPFLLRIGIT----LYGFRLTFPYIADVGPNEIVADT 96 (335)
T ss_pred hccCCCcHHHHHHHHHHHHhccccccch---hhc--cchHHHHHHHHHHHHHH----HHCccccHHHHHHhhHHHHHHHH
Confidence 4556899999999999999975421111 111 1121 133466677776 57999999999999998887777
Q ss_pred HHHHHHHHHHHHHH
Q 003770 130 AGISLPFALGIGSS 143 (796)
Q Consensus 130 ~~~~i~~~~~~~~~ 143 (796)
..+...+.+++.++
T Consensus 97 ~~v~~~~~~~~~~g 110 (335)
T TIGR00698 97 LILTSTFFLTVFLG 110 (335)
T ss_pred HHHHHHHHHHHHHH
Confidence 76666666655444
No 57
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=97.29 E-value=0.19 Score=53.54 Aligned_cols=179 Identities=18% Similarity=0.242 Sum_probs=92.5
Q ss_pred hHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhcchhHHHHHHHHHHHHHHH
Q 003770 59 VIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFAL 138 (796)
Q Consensus 59 iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~i~~~~ 138 (796)
+.-.+++|+.+|-..-+... ..+ .-+...++.--.+|+++.|+-.=+++|.+++++..|+.=.+ +.+..+-+++
T Consensus 20 v~l~i~~Gi~lG~~~p~~~~-~l~----~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L-~lsL~~Nwii 93 (342)
T COG0798 20 VFLAIAIGILLGVHFPGLAQ-LLG----KLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPL-ILSLFVNWII 93 (342)
T ss_pred HHHHHHHHHHHHhcccchhh-hcc----cceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHH-HHHHHHHHHH
Confidence 44557788888844332111 011 01222355566788888899888999999998766553222 2222223332
Q ss_pred ----HHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003770 139 ----GIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVAL 214 (796)
Q Consensus 139 ----~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~~~ll~i~~~~ 214 (796)
.+++++++.... .....-.+.+|.+=| ||...+-. ++.+.+ -..++....+||++.+++++....+
T Consensus 94 ~P~lm~~la~~fl~~~---pey~~GlILlglApC-~aMVivw~-----~La~Gd-~~~tlv~Va~n~l~qiv~y~~~~~~ 163 (342)
T COG0798 94 GPLLMFALAWFFLPDE---PEYRAGLILLGLAPC-IAMVIVWS-----GLAKGD-RELTLVLVAFNSLLQIVLYAPLGKF 163 (342)
T ss_pred HHHHHHHHHHHHhCCC---HHHHHHHHHHHhhhh-HHHHHHHH-----hhccCc-HhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333444443211 111122223333222 33333333 322333 3556667789999999988755543
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 003770 215 SGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQC 253 (796)
Q Consensus 215 ~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~ 253 (796)
.-+..+....++.++..+.+.+.+-++.+.+.+++..|.
T Consensus 164 ~l~v~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~ 202 (342)
T COG0798 164 FLGVISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKK 202 (342)
T ss_pred HHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 332222223455666655555555666666666666664
No 58
>PRK15456 universal stress protein UspG; Provisional
Probab=97.24 E-value=0.0015 Score=61.97 Aligned_cols=131 Identities=16% Similarity=0.099 Sum_probs=74.5
Q ss_pred ceEEEEeccCCc--ChHHHHHHHHHHhcCCCeEEEEEEeeecccccCCcc-ccC-CcCc---cccHHHHHHHHHhhcCCC
Q 003770 624 SYTITVLFFGGR--DDREALACGARMAEHPGISFIVIRFLLAADAIGNTV-SVD-MAGN---ASMDEEVLSEFKLKTSRN 696 (796)
Q Consensus 624 ~~~i~~~f~GG~--ddreAL~~a~rma~~~~v~ltvv~~~~~~~~~~~~~-~~~-~~~~---~~~d~~~~~~~~~~~~~~ 696 (796)
.+||++++.|.+ .++.|+++|.++|+.. .+++++++.+......... ..+ ++.+ ++..++.++++..+...
T Consensus 2 ~~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 79 (142)
T PRK15456 2 YKTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTI- 79 (142)
T ss_pred CccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhCC-
Confidence 469999999984 7999999999999875 5899999986432100000 000 0011 11122445555544322
Q ss_pred CceEEEEEEecChHHHHHHHHhcc--CCCEEEEccCCCchhhcccccCCCCCccccchhhhccCCCCceeEEEE
Q 003770 697 GSVRYEERLVRNTAETIAVIREVS--RCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLII 768 (796)
Q Consensus 697 ~~v~~~e~~v~~~~~~~~~l~~~~--~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~SvLvv 768 (796)
+.+.+. ..+..|.....+++..+ +.||+|+|+++. |+.+| =+|-..+-++..- . .+||||
T Consensus 80 ~~~~v~-~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~-----~~~~~----llGS~a~~v~~~a-~-~pVLvV 141 (142)
T PRK15456 80 DPSRIK-QHVRFGSVRDEVNELAEELGADVVVIGSRNP-----SISTH----LLGSNASSVIRHA-N-LPVLVV 141 (142)
T ss_pred CCcceE-EEEcCCChHHHHHHHHhhcCCCEEEEcCCCC-----Cccce----ecCccHHHHHHcC-C-CCEEEe
Confidence 222222 22333332323343333 399999999872 12221 3788888887631 2 688887
No 59
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=97.16 E-value=0.34 Score=51.78 Aligned_cols=147 Identities=17% Similarity=0.113 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhHHhcc---hhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHh
Q 003770 92 VLDTLANLGLIFFMFLVGLELDPKSLRQTG---KKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALS 168 (796)
Q Consensus 92 ~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~---~~~~~ia~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls 168 (796)
.++..-..++.++||..|+.+..+++++.. |..+.....++.+--++++++++.+. . ..-+..|..+-
T Consensus 35 ~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~--l-------~~~l~~Gl~ll 105 (319)
T COG0385 35 WLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFP--L-------PPELAVGLLLL 105 (319)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcC--C-------CHHHHHhHHhe
Confidence 344456888999999999999999888654 44444444455444445555555543 1 12345555442
Q ss_pred hccHH----HHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CChhHHHHHHHHHHHHHHHHHh
Q 003770 169 ITAFP----VLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQ---SSLVPVWVFLSGCVFVICLTLF 241 (796)
Q Consensus 169 ~Ts~~----vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~v 241 (796)
.+.|. .+...+. +.+ --+.++.+.++-+++.++.-+...+..++. .....++.++..++.=.+.+.+
T Consensus 106 ~~~Pggv~S~~~t~lA-----kGn-ValsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~ 179 (319)
T COG0385 106 GCCPGGVASNAMTYLA-----KGN-VALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQL 179 (319)
T ss_pred eeCCCchhHHHHHHHh-----cCc-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 22222 2222222 222 345666777888888877665555443332 1234455555555555666777
Q ss_pred hHHHHHHHHHHh
Q 003770 242 VPPTFKWMARQC 253 (796)
Q Consensus 242 ~~~~~~~i~~~~ 253 (796)
+|+......++.
T Consensus 180 ~r~~~~~~~~~~ 191 (319)
T COG0385 180 LRPLLPKWVERL 191 (319)
T ss_pred HHHHHHHHHHHH
Confidence 777766555553
No 60
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=97.08 E-value=0.048 Score=57.14 Aligned_cols=259 Identities=13% Similarity=0.131 Sum_probs=133.0
Q ss_pred HHHHHHHHhhccCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccCCchhHHHHHHHHHHhhccHHHHHHHH
Q 003770 101 LIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETI-SKGVDSTSFLVFMGVALSITAFPVLARIL 179 (796)
Q Consensus 101 l~~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~i~~~~~~~~~~~l~~~~-~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL 179 (796)
+..++|-.|-++|++...+..||...+-+.-+.+..+++..+..+++..- ..+.......+.+-++++.|--..=..+.
T Consensus 51 l~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~ 130 (314)
T TIGR00793 51 LAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIM 130 (314)
T ss_pred HHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHH
Confidence 45688999999999998888888887777788888888887777775321 00111123455555666666666666777
Q ss_pred HhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCc
Q 003770 180 AELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPV 259 (796)
Q Consensus 180 ~el~ll~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~ 259 (796)
.|.+ -++|.|-.. ...++|.=-+.+++ +. ..+..-
T Consensus 131 ~qyG-d~~D~gA~~--i~sl~~GPf~TMi~------------------------LG-~sGlA~----------------- 165 (314)
T TIGR00793 131 QQYG-TKEEAGAFV--LMSLESGPLMTMVI------------------------LG-TAGIAS----------------- 165 (314)
T ss_pred HHcC-CHhhhhhhh--hhhhccCcHHHHHH------------------------Hh-hccCCC-----------------
Confidence 7777 355555322 11122211111111 00 000000
Q ss_pred chHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhh
Q 003770 260 EETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQ 339 (796)
Q Consensus 260 ~e~~~~~~l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~ 339 (796)
-+... +=+.+=+++.|+++.| +.+++.+-+..-. ..++|+|-...|..+|+..+...-
T Consensus 166 ip~~~------------------lv~~ilPlliG~ilGN---LD~~~r~fl~~~~-~~lIpFf~FaLGaginl~~i~~aG 223 (314)
T TIGR00793 166 FEPHV------------------FVGAVLPFLVGFALGN---LDPELRDFFSKAV-QTLIPFFAFALGNTIDLGVIIQTG 223 (314)
T ss_pred CCHHH------------------HHHHHHHHHHHHHHhc---CCHHHHHHhccCC-CeeeehhhhhhcCCCCHHHHHHhC
Confidence 00000 0023446777888875 4445555555543 688999999999999998875432
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHHh
Q 003770 340 SWGLLALVILTACLGKIVGTFVVSLSFK-VPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFM 418 (796)
Q Consensus 340 ~~~~~~~i~~~~~~~K~~~~~l~~~~~~-~~~~e~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~~~lvl~~lv~t~i 418 (796)
.-+..+.+ ...+.--...++.-++.+ -+-.-+...+-.-+.--....+++..-.+... -.+..+..|.++++.|.+
T Consensus 224 l~GIlLGl--~v~~vtG~~~~~~dr~~~g~~g~aG~A~sstAGnAvatPaavA~adPs~~~-~a~~ATaqvAaavivTai 300 (314)
T TIGR00793 224 LLGILLGV--SVIILTGIPLILADKFIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKP-VAPAATALVATSVIVTSL 300 (314)
T ss_pred cchHHHHH--HHHHHHhHHHHHHHHHhcCCCCchhhHHHHHHHHhhhhHHHHHHhChhhhh-hHHHHHHHHHHHHHHHHH
Confidence 22222211 122222344555566553 22222222221111111122233333222222 224455555666666777
Q ss_pred HHHHHH-HHhhh
Q 003770 419 TTPLVM-AVYKP 429 (796)
Q Consensus 419 ~~pl~~-~l~~~ 429 (796)
..|++. |++|+
T Consensus 301 L~Pilta~~~kr 312 (314)
T TIGR00793 301 LVPIATVWWSKK 312 (314)
T ss_pred HHHHHHHHHHHh
Confidence 766665 55443
No 61
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.03 E-value=0.0031 Score=69.08 Aligned_cols=104 Identities=14% Similarity=0.112 Sum_probs=64.0
Q ss_pred cceEEEEeccCCcChHHHHHHHHHHhcCC--CeEEEEEEeeecccccCCccccCCcCccccHHHHHHHHHhhcCC-----
Q 003770 623 VSYTITVLFFGGRDDREALACGARMAEHP--GISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSR----- 695 (796)
Q Consensus 623 ~~~~i~~~f~GG~ddreAL~~a~rma~~~--~v~ltvv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----- 695 (796)
..+||++++.|.+..+.|+++|..+|+.. +.+++++++++...... ..+...+..++.+++.++....
T Consensus 4 ~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~-----~~~~~~~~~eelle~~~~~~~~~l~~~ 78 (357)
T PRK12652 4 AANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDP-----EGQDELAAAEELLERVEVWATEDLGDD 78 (357)
T ss_pred ccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCccccc-----chhHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 46799999999999999999999999884 69999999986432110 0001111122344444433211
Q ss_pred CCceEEEEEEe---------cChHHHHHHHHhccCCCEEEEccCC
Q 003770 696 NGSVRYEERLV---------RNTAETIAVIREVSRCNLLLVGRMP 731 (796)
Q Consensus 696 ~~~v~~~e~~v---------~~~~~~~~~l~~~~~~DL~iVGr~~ 731 (796)
...+.+..+++ ++..|++....+-.++||+|+|..-
T Consensus 79 ~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~ 123 (357)
T PRK12652 79 ASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEY 123 (357)
T ss_pred cCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCC
Confidence 13455555554 3555543322222239999999985
No 62
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.83 E-value=0.59 Score=50.30 Aligned_cols=85 Identities=26% Similarity=0.308 Sum_probs=59.3
Q ss_pred ccCCChhHHHHHHHHhcCccccCCchhhhccccCCCcHHH-HHHHHHHHHHHHHHHHhhccCchhHHhcchhHHHHHHHH
Q 003770 53 PLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTV-LDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAG 131 (796)
Q Consensus 53 ~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~-l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia~~~ 131 (796)
...++..+--++.|+++|+..++..+.+ .++... -+.+-++|.+ +.|.++++.++.+.+.+.+.+....
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~~------~~Gi~~~~k~~Lr~gIV----LlG~~l~~~~i~~~G~~~~~~~~~~ 92 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPARF------KPGIKFSSKKLLRLGIV----LLGFRLSFSDILALGWKGLLIIIIV 92 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHHH------HhHHHHHHHHHHHHHHH----HHCccccHHHHHHhCccHHHHHHHH
Confidence 4578888999999999997333332211 012222 3467777776 5799999999999999988888888
Q ss_pred HHHHHHHHHHHH-HHHH
Q 003770 132 ISLPFALGIGSS-FLLR 147 (796)
Q Consensus 132 ~~i~~~~~~~~~-~~l~ 147 (796)
+...+.+++.++ ..++
T Consensus 93 v~~~~~~~~~lg~r~~~ 109 (305)
T PF03601_consen 93 VILTFLLTYWLGRRLFG 109 (305)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 877777766555 4443
No 63
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=96.71 E-value=0.84 Score=49.50 Aligned_cols=113 Identities=19% Similarity=0.245 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHhhccCchhHHhcchhH---HHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhc
Q 003770 94 DTLANLGLIFFMFLVGLELDPKSLRQTGKKA---LGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSIT 170 (796)
Q Consensus 94 ~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~---~~ia~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~T 170 (796)
+.....++..+.|..|+.++.+++++..|+. ...-...+.+.-++++++...+.... ...+..|......
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~-------~~~l~~Gl~~~~~ 102 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFL-------PPELALGLLILAC 102 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccC-------CHHHHHHHHHHhh
Confidence 4677788888999999999999998754443 33323333333334444444443211 1123444333222
Q ss_pred cHHHH-HH-HHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003770 171 AFPVL-AR-ILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSG 216 (796)
Q Consensus 171 s~~vv-~~-iL~el~ll~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~ 216 (796)
-|..+ +. .+++.- +.+ -..++..+.++.++++++.-+...+..
T Consensus 103 lPtTv~S~v~~T~~A--gGN-~a~Al~~~~~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 103 LPTTVSSSVVLTRLA--GGN-VALALFNAVLSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred CCchhhHHHHHHHHc--CCC-HHHHHHHHHHHhhhhHhHHHHHHHHHh
Confidence 22111 11 122222 222 355666777888888877665555443
No 64
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=96.70 E-value=0.37 Score=53.32 Aligned_cols=255 Identities=17% Similarity=0.245 Sum_probs=136.4
Q ss_pred hccCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHH-----hhccHHHHHHHHHh-cC
Q 003770 110 LELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVAL-----SITAFPVLARILAE-LK 183 (796)
Q Consensus 110 le~d~~~l~~~~~~~~~ia~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~l-----s~Ts~~vv~~iL~e-l~ 183 (796)
+.||.+.+.|...|-+...+.+.+..++++..++.+++... ....+.+..-. ..-+.|. +.+-++ .+
T Consensus 109 Lgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G~~~------~~~i~~i~lPIMgGG~GaGavPL-S~~Ya~~~g 181 (414)
T PF03390_consen 109 LGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFGYSF------KDAIFYIVLPIMGGGMGAGAVPL-SQIYAEALG 181 (414)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH------HHHHHHHHhhhcCCCccccHhHH-HHHHHHHhC
Confidence 47899999998888888888888888888888877776532 12222222211 1111221 112211 23
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCC------------------hhHHHHHHHHHHHHHHHHHh
Q 003770 184 LLTADVGRMAMSAAAVNDVAAWILLALAVALSGSG----QSS------------------LVPVWVFLSGCVFVICLTLF 241 (796)
Q Consensus 184 ll~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~----~~~------------------~~~~~~~~~~i~~~~~~~~v 241 (796)
.-..++-..++.+.++..+++++.-++.--+.... +++ .... .-...-.+..+.+|.
T Consensus 182 ~~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~~~~~~~~~~~~~~~~~-~~~g~Gllla~~~y~ 260 (414)
T PF03390_consen 182 QDAEEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGGDDEEEEAKKKEKPIDF-SDMGAGLLLACSFYI 260 (414)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCCccccccccccCCCCCH-HHHHHHHHHHHHHHH
Confidence 33445556666777777777777666554432210 000 0001 111111223334444
Q ss_pred hHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHH
Q 003770 242 VPPTFKWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPL 321 (796)
Q Consensus 242 ~~~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~Pl 321 (796)
++.++..+. . .+ .+.+.++..+ +...+| ++| +.-++=.++...+...-+.+.
T Consensus 261 ~G~ll~~~i-~------ih-~~a~mIi~~~-----i~K~~~------------lvP---~~~e~~a~~~~~f~~~~lt~~ 312 (414)
T PF03390_consen 261 LGVLLSKLI-G------IH-AYAWMIILVA-----IVKAFG------------LVP---ESLEEGAKQWYKFFSKNLTWP 312 (414)
T ss_pred HHHHHHHhc-C------Cc-HHHHHHHHHH-----HHHHhC------------cCC---HHHHHHHHHHHHHHHHHHHHH
Confidence 444443333 0 11 1222111111 112222 133 222222334444444556666
Q ss_pred HHhhhhcc-ccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH-HHHHHHHhhhhH-HHHHHHHHhhhccC
Q 003770 322 YFVSSGLK-TNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLRE-ALALGILMNTKG-LVELIVLNIGKDRK 398 (796)
Q Consensus 322 fF~~~G~~-~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~e-~~~lgl~l~~kG-~~~l~l~~~~~~~~ 398 (796)
..+-+|+. +|+.++.+..++.. +++++..+++-.++.++.+++.|+-.-| ++..|+.++.+| .-+++++..+...+
T Consensus 313 lLvgiGv~~~~l~~l~~a~t~~~-vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~ 391 (414)
T PF03390_consen 313 LLVGIGVAYTDLNDLIAAFTPQY-VVIVLATVLGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGTGDVAVLSAANRME 391 (414)
T ss_pred HHHHHHhhhCcHHHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCCCcchheehhhhcc
Confidence 77788888 99988876556654 3445566667788889999999985555 555676776665 55677777766666
Q ss_pred CCC
Q 003770 399 VLN 401 (796)
Q Consensus 399 ~i~ 401 (796)
++.
T Consensus 392 Lmp 394 (414)
T PF03390_consen 392 LMP 394 (414)
T ss_pred ccc
Confidence 655
No 65
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=96.66 E-value=1.3 Score=47.95 Aligned_cols=301 Identities=16% Similarity=0.176 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCh--hHH-HHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHh
Q 003770 33 AILQICLVILLTRGLAFILRPLRQPR--VIA-EITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVG 109 (796)
Q Consensus 33 ~l~~i~lil~~~~~~~~ll~~l~~P~--iv~-~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~G 109 (796)
...|.++.+.++...++++..+++|. ..| -+++|++.+-.... ...-..+..+|.+.+=-.+|
T Consensus 7 ~~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~--------------l~~P~~l~~~~q~ilG~~ig 72 (352)
T COG3180 7 IILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLT--------------LPLPRGLFKAGQVILGIMIG 72 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccc--------------ccCChHHHHHHHHHHHHHHh
Confidence 36788888999999999999988764 455 66777777621111 11124456667777777899
Q ss_pred hccCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCChh
Q 003770 110 LELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADV 189 (796)
Q Consensus 110 le~d~~~l~~~~~~~~~ia~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~ 189 (796)
..+..+.+.... +-+.+.+...+++...+...+|++..... .+. ..+ ++|. ++-.......+-+|.| .+.+.
T Consensus 73 ~~~t~s~l~~l~-~~w~~~~~v~~~tl~~s~l~g~ll~r~~~--~~~-~Ta-~~gs--~PGgas~m~~iA~d~g-Ad~~~ 144 (352)
T COG3180 73 ASLTPSVLDTLK-SNWPIVLVVLLLTLLSSILLGWLLKRFSI--LPG-NTA-FLGS--SPGGASAMVSIAQDYG-ADLRL 144 (352)
T ss_pred hhcCHHHHHHHH-HcccHHHHHHHHHHHHHHHHHHHHHHhcC--CCc-chh-hHhc--CCchHHHHHHHHHHhC-CChhH
Confidence 999887765432 33334444455556666666666654431 111 112 2221 1111122222224555 34333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCC------CCcchHH
Q 003770 190 GRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEG------EPVEETY 263 (796)
Q Consensus 190 g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~------~~~~e~~ 263 (796)
-.+..+.=++-=... .-++.+.... .++..+. .+.....
T Consensus 145 VAl~Q~lRvl~Vvl~---------------------------------vplv~~~~~~--~~a~~~~~~~i~~~~~~~~~ 189 (352)
T COG3180 145 VALMQYLRVLFVVLL---------------------------------APLVSRLFVG--DGANGSGTPEIWLPPVDWLI 189 (352)
T ss_pred HHHHHHHHHHHHHHH---------------------------------HHHHHHHhcC--CCCCCCCCccccCchhhHHH
Confidence 222211111111111 1111111000 0000000 0001111
Q ss_pred HHHHHHHHHHHHHHHHHhch--hHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhh-h
Q 003770 264 VCATLAAVLAAGFITDAIGI--HAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQ-S 340 (796)
Q Consensus 264 ~~~~l~~~l~~~~~ae~~g~--~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~-~ 340 (796)
+.+.+...++.+.+...+++ ...+|+++.|..+.-.....-++-+-+..+. .-+.-..+|.++|-..+.... .
T Consensus 190 ~~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~~~lP~wl~~va----~~~iG~~IG~~f~~~~l~~~~r~ 265 (352)
T COG3180 190 LLLLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGGITIQLPAWLLAVA----QALIGALIGSRFDRSILREAKRL 265 (352)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcccceeeeCCHHHHHHH----HHHHHHHHcccccHHHHHHhHhh
Confidence 33444444555555555555 3556777777766533222222222222222 224457889999876654322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhcc
Q 003770 341 WGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDR 397 (796)
Q Consensus 341 ~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~~~l~l~~~~~~~ 397 (796)
....++.++..++.-....++..++.++++.++.. ..+|-|.-+++....+.+.
T Consensus 266 ~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~L---a~sPGGl~~ma~~A~~l~a 319 (352)
T COG3180 266 LPAILVSIIALMAIAAGMAGLLSWLTGIDLNTAYL---ATSPGGLDTMAAIAAALGA 319 (352)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH---HcCCCcHHHHHHHHHHcCC
Confidence 22233344445555566677778888998887543 3478888888777666553
No 66
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.50 E-value=0.098 Score=62.27 Aligned_cols=117 Identities=14% Similarity=0.079 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCChhH-HHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhH
Q 003770 263 YVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFAN-ALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSW 341 (796)
Q Consensus 263 ~~~~~l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~~~~~~~-~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~ 341 (796)
.+.+.++...++..++..+|+++++|=.++|+++.... ++- .-.+.++.+. ++-..++...+|+.+|+..++.. .
T Consensus 9 ~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~-lg~i~~~~~i~~la-elGvv~LlF~iGLEl~~~~l~~~--~ 84 (621)
T PRK03562 9 QALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWG-LRLVTDVESILHFA-EFGVVLMLFVIGLELDPQRLWKL--R 84 (621)
T ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCccc-ccCCCCHHHHHHHH-HHHHHHHHHHHHhCcCHHHHHHH--H
Confidence 34566667777888899999999999999999995211 110 0123355554 66677788899999999887642 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhh
Q 003770 342 GLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTK 383 (796)
Q Consensus 342 ~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~k 383 (796)
..++.+-..-++.-.+..+..++++|++|..++.+|..+..-
T Consensus 85 ~~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~S 126 (621)
T PRK03562 85 RSIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALS 126 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 111111112222223334455677899999999988876543
No 67
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=96.43 E-value=0.45 Score=51.19 Aligned_cols=85 Identities=21% Similarity=0.337 Sum_probs=56.0
Q ss_pred HHHHHHHHhhhhcc-ccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-HHHHhhhhHH-HHHHHHH
Q 003770 316 GIFLPLYFVSSGLK-TNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALA-LGILMNTKGL-VELIVLN 392 (796)
Q Consensus 316 ~~~~PlfF~~~G~~-~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~e~~~-lgl~l~~kG~-~~l~l~~ 392 (796)
.+.-|+. +.+|.. +|+..+.+..+|..+ ++.+...++-..+.++.+|+.|+-.-|+.. -|++|+.+|. -+++++.
T Consensus 327 ~~t~~Lm-~giGv~ytdl~ev~~alt~~~v-ii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~GGtGDvaVLs 404 (438)
T COG3493 327 NLTWPLM-AGIGVAYTDLNEVAAALTWQNV-IIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANMGGTGDVAVLS 404 (438)
T ss_pred hhHHHHH-HhhhhccccHHHHHHHhchhHH-HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCCCCCCchHHhh
Confidence 4444544 456665 898888766666654 344555667788899999999986656555 5598877764 4566666
Q ss_pred hhhccCCCCh
Q 003770 393 IGKDRKVLND 402 (796)
Q Consensus 393 ~~~~~~~i~~ 402 (796)
.+-..++++-
T Consensus 405 Aa~RM~LmpF 414 (438)
T COG3493 405 AADRMELMPF 414 (438)
T ss_pred hcchhccccH
Confidence 6655555543
No 68
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=96.32 E-value=1.5 Score=48.00 Aligned_cols=103 Identities=20% Similarity=0.158 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhhccCchhHHhcchhHHH---HHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHH-
Q 003770 98 NLGLIFFMFLVGLELDPKSLRQTGKKALG---IAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFP- 173 (796)
Q Consensus 98 ~lgl~~~lF~~Gle~d~~~l~~~~~~~~~---ia~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~- 173 (796)
.+++.++||-.|++++++++++..|+.-. --+..+++-=++++.++..+... + ..+.+|..+-...|.
T Consensus 46 ~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~---~-----p~l~~GliLv~~~Pgg 117 (328)
T TIGR00832 46 AIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFLRD---L-----FEYIAGLILLGLARCI 117 (328)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCC---C-----HHHHHHHHHHHhcchH
Confidence 35667899999999999998876554332 22333333223455555443211 1 124455544332222
Q ss_pred HHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 003770 174 VLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALA 211 (796)
Q Consensus 174 vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~~~ll~i~ 211 (796)
+.+.+.+.+. +.+. .+.++...++-+.+.++.-..
T Consensus 118 ~~S~v~T~lA--kGnv-alsv~lt~~stLl~~~~~P~l 152 (328)
T TIGR00832 118 AMVFVWNQLA--KGDP-EYTLVLVAVNSLFQVFLYAPL 152 (328)
T ss_pred HHHHHHHHHc--CCCH-HHHHHHHHHHHHHHHHHHHHH
Confidence 2333344333 3333 255555566776666555433
No 69
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=96.25 E-value=0.36 Score=52.29 Aligned_cols=45 Identities=13% Similarity=0.279 Sum_probs=36.3
Q ss_pred HHHHHHhhccCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003770 103 FFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLR 147 (796)
Q Consensus 103 ~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~i~~~~~~~~~~~l~ 147 (796)
.++|-.|-.+|++...+..||...+.+.-+.+..+++.....++.
T Consensus 55 ~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~~~~~~~~~~~~~~~g 99 (326)
T PRK05274 55 VFLFCMGASINLRATGTVLKKGGTLLLTKFAVAALVGVIAGKFIG 99 (326)
T ss_pred HHHHHcCCEEeccccchhhhhchhHHHHHHHHHHHHHHHhhhcch
Confidence 688999999999998888888887877777777777776666554
No 70
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=96.25 E-value=0.19 Score=53.44 Aligned_cols=130 Identities=20% Similarity=0.262 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHhhcCCCCChhH-HHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhHHHHHHHH
Q 003770 270 AVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFAN-ALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVI 348 (796)
Q Consensus 270 ~~l~~~~~ae~~g~~~~lgafvaGl~l~~~~~~~~-~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~i~ 348 (796)
.....+.+++.++++.++|-.++|+++... -++. .-.+.++.+. .+-+.++....|+++|+..+.+. +.....+.
T Consensus 3 ~a~~~~~l~~~l~lP~~v~~il~GillGp~-~lg~i~~~~~~~~l~-~igl~~llF~~Gl~~d~~~l~~~--~~~~~~~~ 78 (273)
T TIGR00932 3 AAVLAVPLSRRLGIPSVLGYLLAGVLIGPS-GLGLISNVEGVNHLA-EFGVILLMFLIGLELDLERLWKL--RKAAFGVG 78 (273)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhCcc-cccCCCChHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHH--HHHHHHHH
Confidence 345567889999999999999999999631 1110 0112344443 56667788899999999887642 22222323
Q ss_pred HHHHHHH-HHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCChhHH
Q 003770 349 LTACLGK-IVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVF 405 (796)
Q Consensus 349 ~~~~~~K-~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~ 405 (796)
...++.- ++..+...++++.++.++..+|..+++-. .-++.....|.+..+.+.-
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~v~~~il~~~~~~~~~~g 134 (273)
T TIGR00932 79 VLQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSS--TAVVVQVLKERGLLKTPFG 134 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhH--HHHHHHHHHHcCcccChHH
Confidence 3333333 33444566778999999999999877543 2334444555555554433
No 71
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.10 E-value=0.23 Score=58.92 Aligned_cols=114 Identities=18% Similarity=0.146 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhHH
Q 003770 264 VCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEG-PFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWG 342 (796)
Q Consensus 264 ~~~~l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~~~-~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~ 342 (796)
..+.++...++..++..+|+++++|=.++|+++.... ..-+ -.+.++.+. .+-+.++...+|+.+|+..+......
T Consensus 10 ~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~-~~~~i~~la-elGvv~LLF~iGLel~~~~l~~~~~~- 86 (601)
T PRK03659 10 GVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFIS-DVDEILHFS-ELGVVFLMFIIGLELNPSKLWQLRRS- 86 (601)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCC-cHHHHHHHH-HHHHHHHHHHHHhcCCHHHHHHHHHH-
Confidence 4455566666677888999999999999999996311 1111 113344443 56666777888999999887642221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhh
Q 003770 343 LLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMN 381 (796)
Q Consensus 343 ~~~~i~~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~ 381 (796)
...+....++.-.+.......+++++|..++.+|..+.
T Consensus 87 -~~~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la 124 (601)
T PRK03659 87 -IFGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLA 124 (601)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 11111111111121222234456889999888887554
No 72
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.98 E-value=0.27 Score=57.96 Aligned_cols=133 Identities=14% Similarity=0.265 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhHHH
Q 003770 265 CATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEG-PFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGL 343 (796)
Q Consensus 265 ~~~l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~~~-~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~ 343 (796)
..++...++++.++..++++.++|=.++|+++.... ..-+. .+.++.+. .+-+-++...+|+++|+..+.... ..
T Consensus 12 ~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~-~~~~~~la-~lGli~llF~~Gle~d~~~l~~~~--~~ 87 (558)
T PRK10669 12 VGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVAD-TKLAPELA-ELGVILLMFGVGLHFSLKDLMAVK--SI 87 (558)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccc-hHHHHHHH-HHHHHHHHHHhHhcCCHHHHHHHh--hH
Confidence 344666677778888899999999999999996311 11000 12344443 555566777889999998775421 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCChh
Q 003770 344 LALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQ 403 (796)
Q Consensus 344 ~~~i~~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~ 403 (796)
.....+...+.-++..+...+.+++++.+++.+|..++.-.. .++.....+.|.++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s~ 145 (558)
T PRK10669 88 AIPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDSQ 145 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccCc
Confidence 111111122222333444556778999999999987666332 3445555666666553
No 73
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=95.83 E-value=4.2 Score=45.52 Aligned_cols=92 Identities=16% Similarity=0.217 Sum_probs=52.9
Q ss_pred chhHHHHHHHHHhhcCCCCCh--hHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhHHHHHHHHHHHHHHHH-HH
Q 003770 282 GIHAMFGAFVVGVLVPKEGPF--ANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKI-VG 358 (796)
Q Consensus 282 g~~~~lgafvaGl~l~~~~~~--~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~K~-~~ 358 (796)
.+....+|++.|+++.+-.+. ..++.++.-+...++.+-+|.+..=+.+++..+.+ .+.-.+++++..++.-. ..
T Consensus 244 ~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~--~a~Plliil~~q~i~~~l~~ 321 (398)
T TIGR00210 244 MLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELAD--LAGPIALILLVQVMFMALYA 321 (398)
T ss_pred CCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999861110 11122223333345666677777778888888874 33333333333333333 44
Q ss_pred HHHHHHhcCCChHHHHHH
Q 003770 359 TFVVSLSFKVPLREALAL 376 (796)
Q Consensus 359 ~~l~~~~~~~~~~e~~~l 376 (796)
.++..+.+|-+ .|+..+
T Consensus 322 ~fv~fr~mg~~-ydaaV~ 338 (398)
T TIGR00210 322 IFVTFRLMGKD-YDAAVL 338 (398)
T ss_pred HHHhHHhccch-HHHHHH
Confidence 45666667766 676663
No 74
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=95.83 E-value=3.6 Score=44.73 Aligned_cols=128 Identities=17% Similarity=0.147 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHhch--hHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhh-h
Q 003770 264 VCATLAAVLAAGFITDAIGI--HAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQ-S 340 (796)
Q Consensus 264 ~~~~l~~~l~~~~~ae~~g~--~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~-~ 340 (796)
+.+.+....+.+++.+.+++ ..++|+++.+.++.-.....-.+-+.+... ..-+.=..+|.+++...+.... .
T Consensus 157 l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l~~~----aqv~iG~~iG~~f~~~~l~~~~~~ 232 (318)
T PF05145_consen 157 LALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWLVNA----AQVLIGASIGSRFTRETLRELRRL 232 (318)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHHHHH----HHHHHHHHHHccccHHHHHHHHHH
Confidence 44555566667777777776 467777777776653211111111222222 2223457888998876665332 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccC
Q 003770 341 WGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRK 398 (796)
Q Consensus 341 ~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~~~l~l~~~~~~~~ 398 (796)
+...+...+..+..-.+..++..++.++++.+++ +.+.|-|.-++.+.....+.+
T Consensus 233 ~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~---La~aPGGl~eM~l~A~~l~~d 287 (318)
T PF05145_consen 233 LPPALLSTLLLLALCALFAWLLSRLTGIDFLTAL---LATAPGGLAEMALIALALGAD 287 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH---HHhCCccHHHHHHHHHHcCCC
Confidence 3334444555555667778888888999887654 345788988888877766654
No 75
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.66 E-value=0.39 Score=51.71 Aligned_cols=129 Identities=16% Similarity=0.176 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHH----HhchhHHHHHHHHHhhcCC-CCChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhh
Q 003770 266 ATLAAVLAAGFITD----AIGIHAMFGAFVVGVLVPK-EGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQS 340 (796)
Q Consensus 266 ~~l~~~l~~~~~ae----~~g~~~~lgafvaGl~l~~-~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~ 340 (796)
+.+++.....++++ ..++++.+=|.+.|+++.| -....+....-++.. ...++.+=.+..|.++++.++.+ ..
T Consensus 5 l~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~-~k~~Lr~gIVLlG~~l~~~~i~~-~G 82 (305)
T PF03601_consen 5 LCFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFS-SKKLLRLGIVLLGFRLSFSDILA-LG 82 (305)
T ss_pred HHHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHH-HHHHHHHHHHHHCccccHHHHHH-hC
Confidence 34444555555555 4677888899999999986 344445555555544 35778888999999999988865 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhcc
Q 003770 341 WGLLALVILTACLGKIVGTFVVS-LSFKVPLREALALGILMNTKGLVELIVLNIGKDR 397 (796)
Q Consensus 341 ~~~~~~i~~~~~~~K~~~~~l~~-~~~~~~~~e~~~lgl~l~~kG~~~l~l~~~~~~~ 397 (796)
+...... ++....-+..++..+ +.+|++++.+..++...+.=|.-+++...-..+.
T Consensus 83 ~~~~~~~-~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a 139 (305)
T PF03601_consen 83 WKGLLII-IIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKA 139 (305)
T ss_pred ccHHHHH-HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccC
Confidence 3222223 333333444455555 9999999999999998877777666555444443
No 76
>PRK10490 sensor protein KdpD; Provisional
Probab=95.50 E-value=0.072 Score=66.26 Aligned_cols=123 Identities=13% Similarity=0.105 Sum_probs=84.8
Q ss_pred CcceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHH
Q 003770 450 AQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAF 529 (796)
Q Consensus 450 ~elriLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af 529 (796)
...|||||+.+..+...+++-...++.. ...+.+++|+.....+..+ .+..+++.+.+
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~---~~a~~~~l~V~~~~~~~~~-------------------~~~~~~l~~~~ 306 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAAR---LGSVWHAVYVETPRLHRLP-------------------EKKRRAILSAL 306 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHh---cCCCEEEEEEecCCcCcCC-------------------HHHHHHHHHHH
Confidence 4568999999999999999999888854 5677899998632111100 02234555555
Q ss_pred HHhhhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCC-CceEEE
Q 003770 530 EAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAP-CSVGIL 607 (796)
Q Consensus 530 ~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~Ap-csVgIl 607 (796)
+ .+++-+..+... .+ +++++.|.++|++++++.||||-+++.+. + ..+++.+++++.+| -+|=|+
T Consensus 307 ~-lA~~lGa~~~~~--~~--~dva~~i~~~A~~~~vt~IViG~s~~~~~---~-----~~~s~~~~l~r~~~~idi~iv 372 (895)
T PRK10490 307 R-LAQELGAETATL--SD--PAEEKAVLRYAREHNLGKIIIGRRASRRW---W-----RRESFADRLARLGPDLDLVIV 372 (895)
T ss_pred H-HHHHcCCEEEEE--eC--CCHHHHHHHHHHHhCCCEEEECCCCCCCC---c-----cCCCHHHHHHHhCCCCCEEEE
Confidence 4 555544443322 23 69999999999999999999998765422 1 12478899999998 455553
No 77
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=95.48 E-value=0.17 Score=50.53 Aligned_cols=129 Identities=25% Similarity=0.398 Sum_probs=84.5
Q ss_pred HHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCc-----hhHHhcchhHHHHHHHHHHH
Q 003770 60 IAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDP-----KSLRQTGKKALGIAIAGISL 134 (796)
Q Consensus 60 v~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle~d~-----~~l~~~~~~~~~ia~~~~~i 134 (796)
++.+++|+++|-..... ....+...+..+..++|.+|+++-- +.+++.+++++.+.+...+-
T Consensus 2 l~~li~Gi~lG~~~~~~-------------~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlG 68 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP-------------FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILG 68 (191)
T ss_pred eeeHHHHHHHHHHhccc-------------ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34567888888432211 1123678888999999999999844 35677778999999988888
Q ss_pred HHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 003770 135 PFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAV 212 (796)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~~~ll~i~~ 212 (796)
+++.+.+++.++.... ..++.++.-+ -=+.....+++|++ +.++|.++.-+=++-+++++++.-+..
T Consensus 69 Sllgg~l~~~ll~~~~-------~~~lav~sG~--GwYSlsg~~i~~~~--~~~~G~iafl~n~~RE~~a~~~~P~~~ 135 (191)
T PF03956_consen 69 SLLGGLLASLLLGLSL-------KESLAVASGF--GWYSLSGVLITQLY--GPELGTIAFLSNLFREILAIILIPLLA 135 (191)
T ss_pred HHHHHHHHHHHhcCCH-------HHHHHHHccC--cHHHhHHHHHHhhh--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887777774321 3444444332 11222223444444 678898888888888887776665443
No 78
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=95.32 E-value=0.72 Score=51.81 Aligned_cols=137 Identities=15% Similarity=0.175 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCC-CCC---hhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhh
Q 003770 263 YVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPK-EGP---FANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGL 338 (796)
Q Consensus 263 ~~~~~l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~-~~~---~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~ 338 (796)
.+..++..+.....+.+.+|+++++|-.++|+++.. ... ..++..+-+..+ =.-++...+|+.+|+..+...
T Consensus 10 ~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~lael----Gvi~LlF~~GLE~~~~~l~~~ 85 (397)
T COG0475 10 QLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAEL----GVVFLLFLIGLEFDLERLKKV 85 (397)
T ss_pred HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHH----hHHHHHHHHHHCcCHHHHHHh
Confidence 355666667777799999999999999999999985 111 223333334444 344566789999999888753
Q ss_pred hhHHHHHHHHHHHHHHHHHHH--HHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCChhHHHH
Q 003770 339 QSWGLLALVILTACLGKIVGT--FVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAI 407 (796)
Q Consensus 339 ~~~~~~~~i~~~~~~~K~~~~--~l~~~~~~~~~~e~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~~~ 407 (796)
.... ........+..=++.. +... .++.++++++++|..+..-.. -+.+....|.|...++..+.
T Consensus 86 ~~~~-~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~sS~--~i~~~iL~e~~~~~~~~g~~ 152 (397)
T COG0475 86 GRSV-GLGVAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALALSST--AIVLKILMELGLLKTREGQL 152 (397)
T ss_pred chhh-hhhHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHHHH--HHHHHHHHHhccccchHHHH
Confidence 2221 1222222222221222 2223 589999999999887655332 12233344445444444333
No 79
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=95.18 E-value=0.5 Score=46.19 Aligned_cols=114 Identities=22% Similarity=0.303 Sum_probs=73.7
Q ss_pred cccCCChhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhH---HhcchhHHHHH
Q 003770 52 RPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSL---RQTGKKALGIA 128 (796)
Q Consensus 52 ~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l---~~~~~~~~~ia 128 (796)
+++++-...|-+++|+++|-. +...+.. . .....+.+.++|+.+|++.+|++--++-+ ++.+.+...++
T Consensus 19 ~~~~LG~a~G~L~vgL~~G~~--~~~~~~~---~---~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~ 90 (169)
T PF06826_consen 19 GGFSLGAAGGVLFVGLILGAL--GRTGPIF---L---PISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLG 90 (169)
T ss_pred cceeccccHHHHHHHHHHHHh--hhccCCC---C---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 556666677899999999842 2111111 1 23457789999999999999999887644 45566666777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHH-HHhhccHHHHHHHHHh
Q 003770 129 IAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV-ALSITAFPVLARILAE 181 (796)
Q Consensus 129 ~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~e 181 (796)
+.-.++|.++++..++++.. .+ .....|. +=+.|++|.+....+.
T Consensus 91 ~~i~~~~~~~~~~~~~~~~~-----l~---~~~~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 91 VIITLVPLLIALVIGRYLFK-----LN---PGIAAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHcC-----CC---HHHHHHHHHccccCcHHHHHHHHh
Confidence 77777777777766663321 11 2333443 3367887877766544
No 80
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.18 E-value=0.39 Score=56.69 Aligned_cols=119 Identities=14% Similarity=0.162 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCChhH--HHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhHH
Q 003770 265 CATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFAN--ALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWG 342 (796)
Q Consensus 265 ~~~l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~~~~~~~--~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~ 342 (796)
.+++.+..+++.+++.+|++.+++-.++|+++.....-.- .-.+-.+.+ ..+.+++.....|+++|+..+.. .+.
T Consensus 12 ~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i-~~l~L~~iLF~~Gl~~~~~~l~~--~~~ 88 (562)
T PRK05326 12 ALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLV-GNLALAVILFDGGLRTRWSSFRP--ALG 88 (562)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHH-HHHHHHHHHHcCccCCCHHHHHH--HHH
Confidence 3445555666778888899999999999999874221100 111223333 47888889999999999988864 333
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhcCCChHHHHHHHHHhhhhHHH
Q 003770 343 LLALVILTACLGKIVG-TFVVSLSFKVPLREALALGILMNTKGLV 386 (796)
Q Consensus 343 ~~~~i~~~~~~~K~~~-~~l~~~~~~~~~~e~~~lgl~l~~kG~~ 386 (796)
....+....++.-.+. .+...++++++|.+++.+|.++++-...
T Consensus 89 ~~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a 133 (562)
T PRK05326 89 PALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAA 133 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchH
Confidence 3333333333333333 4455667899999999999887765543
No 81
>COG2855 Predicted membrane protein [Function unknown]
Probab=95.15 E-value=0.32 Score=52.06 Aligned_cols=118 Identities=14% Similarity=0.121 Sum_probs=84.6
Q ss_pred HHHHHhchhHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhHHHHHHHHHHHHHHH
Q 003770 276 FITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGK 355 (796)
Q Consensus 276 ~~ae~~g~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~K 355 (796)
...+..|+++..=|.+.|+++....+.+.+...-++... ..++.+=.+..|++++++++.+. .+. .+.+.+..+..-
T Consensus 30 ~~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~-k~LLr~gIvLlG~~ltl~~i~~~-G~~-~v~~~~~~l~~t 106 (334)
T COG2855 30 FFSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFSS-KKLLRLGIVLLGFRLTLSDIADV-GGS-GVLIIAITLSST 106 (334)
T ss_pred HHhhhcCchHHHHHHHHHHHHhccccchhhhccchhhhH-HHHHHHHHHHHcceeeHHHHHHc-Ccc-HHHHHHHHHHHH
Confidence 344556667888899999999865555555555555553 67778888999999999988752 232 233445555667
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhc
Q 003770 356 IVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKD 396 (796)
Q Consensus 356 ~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~~~l~l~~~~~~ 396 (796)
++.+++.++++|++++.+..+|..-+.=|.-+++......+
T Consensus 107 ~~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~pvik 147 (334)
T COG2855 107 FLFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAPVIK 147 (334)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCcCC
Confidence 77788888899999999999999877777766665544443
No 82
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=95.06 E-value=2.2 Score=42.47 Aligned_cols=107 Identities=21% Similarity=0.277 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhccCchhHHhcchhHHHHH--H-HHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhcc-HHH
Q 003770 99 LGLIFFMFLVGLELDPKSLRQTGKKALGIA--I-AGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITA-FPV 174 (796)
Q Consensus 99 lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia--~-~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts-~~v 174 (796)
+.+.+.||..|++++++++++..|+...+. + ..+++.-++++++++.+... + .....|..+...+ -+.
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~---~-----~~~~~Gl~l~~~~P~~~ 73 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPL---S-----PALALGLLLVAACPGGP 73 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT----------HHHHHHHHHHHHS-B-T
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcC---C-----HHHHHHHHHHhcCCcHH
Confidence 457789999999999999998776644332 2 23333333344444222211 1 1223333221111 122
Q ss_pred HHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003770 175 LARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSG 216 (796)
Q Consensus 175 v~~iL~el~ll~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~ 216 (796)
.+...+.+. +.+. .+..+...++.+.+.++.-+...+..
T Consensus 74 ~s~~~t~l~--~Gd~-~ls~~lt~istll~~~~~P~~~~l~~ 112 (187)
T PF01758_consen 74 ASNVFTYLA--GGDV-ALSVSLTLISTLLAPFLMPLLLYLLS 112 (187)
T ss_dssp HHHHHHHHT--T--H-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCc-ccccceeeHHHHHHHHHHHHHHHHHh
Confidence 333444332 3222 35566667777777777665555443
No 83
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=95.03 E-value=1.6 Score=47.51 Aligned_cols=119 Identities=17% Similarity=0.233 Sum_probs=77.1
Q ss_pred chhHHHHHHHHHhhcCCCCChhHHHHHHHHHHH---HHHHHHHHHhhhhcc-ccchhhhhhhhHHHHHHHHHHHHHHHHH
Q 003770 282 GIHAMFGAFVVGVLVPKEGPFANALVEKVEDLV---SGIFLPLYFVSSGLK-TNIATIQGLQSWGLLALVILTACLGKIV 357 (796)
Q Consensus 282 g~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~---~~~~~PlfF~~~G~~-~dl~~l~~~~~~~~~~~i~~~~~~~K~~ 357 (796)
++|+..-..++|.++..-.-..+++.++...+. ..-+.+..++-+|+. +|+..+.+..+|.. +++++...++=.+
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~-vviiv~~Vlg~ii 281 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQF-VVICLSVVVAMIL 281 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhH-hhhHHHHHHHHHH
Confidence 568888888888888754545566666544432 233334444555766 78877765444543 4455666677788
Q ss_pred HHHHHHHhcCCChHH-HHHHHHHhhhhH-HHHHHHHHhhhccCCCC
Q 003770 358 GTFVVSLSFKVPLRE-ALALGILMNTKG-LVELIVLNIGKDRKVLN 401 (796)
Q Consensus 358 ~~~l~~~~~~~~~~e-~~~lgl~l~~kG-~~~l~l~~~~~~~~~i~ 401 (796)
+.++.+++.|+-.-| ++..|+.++.+| .-+++++..+...+++.
T Consensus 282 ~s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lmp 327 (347)
T TIGR00783 282 GGAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIP 327 (347)
T ss_pred HHHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhccccc
Confidence 889999999975555 555677786665 45567766666666554
No 84
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=94.96 E-value=0.31 Score=45.99 Aligned_cols=138 Identities=22% Similarity=0.231 Sum_probs=79.5
Q ss_pred cceEEEEecc-CCcChHHHHHHHHHHhcCCCeEEEEEEeeecccccCCccc-cCC-------cCccccHHHHHHHHHhhc
Q 003770 623 VSYTITVLFF-GGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVS-VDM-------AGNASMDEEVLSEFKLKT 693 (796)
Q Consensus 623 ~~~~i~~~f~-GG~ddreAL~~a~rma~~~~v~ltvv~~~~~~~~~~~~~~-~~~-------~~~~~~d~~~~~~~~~~~ 693 (796)
..++|++.+. |.+..+.|+..|...+...+..++++.+.+.......... ... ...++..++.+++.+...
T Consensus 4 ~~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
T COG0589 4 MYKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALA 83 (154)
T ss_pred ccceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3468999999 9999999999999999999999998887754332100000 000 011222345555555543
Q ss_pred CCCCce-EEEEEEecCh-HHHHHHHHhccCCCEEEEccCCCchhhcccccCCCCCccccchhhhccCCCCceeEEEEee
Q 003770 694 SRNGSV-RYEERLVRNT-AETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQQ 770 (796)
Q Consensus 694 ~~~~~v-~~~e~~v~~~-~~~~~~l~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~SvLvvqq 770 (796)
...+.. .-.+....++ .+.+.......++||+++|.++ .+++.+ =-||-.-+-++..- . .+|||+..
T Consensus 84 ~~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g----~~~l~~----~llGsvs~~v~~~~-~-~pVlvv~~ 152 (154)
T COG0589 84 EAAGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRG----RSGLSR----LLLGSVAEKVLRHA-P-CPVLVVRS 152 (154)
T ss_pred HHcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCC----Cccccc----eeeehhHHHHHhcC-C-CCEEEEcc
Confidence 222211 1233333455 3433333332349999999986 223331 24777777777631 1 68998864
No 85
>PRK03818 putative transporter; Validated
Probab=94.66 E-value=1 Score=52.83 Aligned_cols=126 Identities=19% Similarity=0.291 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHH-hcccCCChhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCch
Q 003770 37 ICLVILLTRGLAFI-LRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPK 115 (796)
Q Consensus 37 i~lil~~~~~~~~l-l~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~ 115 (796)
+++.+.+..+++.+ ++.+++- +.|-+++|+++|-.. . . .+. .-......++.++|+.+|+|.+|++.-+.
T Consensus 11 l~l~i~lG~~lG~i~i~g~~LG-~~g~L~~gl~~G~~~--~--~-~~~---~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~ 81 (552)
T PRK03818 11 LALVAVVGLWIGNIKIRGVGLG-IGGVLFGGIIVGHFV--S--Q-FGL---TLDSDMLHFIQEFGLILFVYTIGIQVGPG 81 (552)
T ss_pred HHHHHHHHHhhcceEECCCccc-cHHHHHHHHHHhccc--c--c-cCc---ccChHHHHHHHHHHHHHHHHHHhhcccHH
Confidence 34444444444432 2223333 478899999998421 0 0 010 01234567799999999999999999887
Q ss_pred hHH---hcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHH-HHhhccHHHHHHHHH
Q 003770 116 SLR---QTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV-ALSITAFPVLARILA 180 (796)
Q Consensus 116 ~l~---~~~~~~~~ia~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~ 180 (796)
-+. +.+.+...+++.-.+++.++++.+.++++. + .....|+ +=+.|++|.+....+
T Consensus 82 f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~G~~aGa~T~tp~l~aa~~ 141 (552)
T PRK03818 82 FFSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGI----P-----LPVMLGIFSGAVTNTPALGAGQQ 141 (552)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC----C-----HHHHHHHhhccccccHHHHHHHH
Confidence 654 444555566666666666666555443332 1 1233343 336778777766554
No 86
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=94.39 E-value=1.6 Score=47.66 Aligned_cols=127 Identities=13% Similarity=0.072 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHH-----hchhHHHHHHHHHhhcCCCC--ChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhh
Q 003770 267 TLAAVLAAGFITDA-----IGIHAMFGAFVVGVLVPKEG--PFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQ 339 (796)
Q Consensus 267 ~l~~~l~~~~~ae~-----~g~~~~lgafvaGl~l~~~~--~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~ 339 (796)
.+.+.+.+.++++. .++++.+=|.+.|+++.|-. +..+....-++ +....++-+=.+..|+++++.++.. .
T Consensus 10 ~~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~-f~~k~lLr~gIVLlG~~l~~~~i~~-~ 87 (335)
T TIGR00698 10 MALILLLAGAAGSIINLADPALSALFLAILLGMVAGNTIYPQRDEEKKRGVL-FAKPFLLRIGITLYGFRLTFPYIAD-V 87 (335)
T ss_pred HHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhccccccchhhccchHH-HHHHHHHHHHHHHHCccccHHHHHH-h
Confidence 33444444455543 47788888999999998621 22233222233 3335666777899999999988864 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhc
Q 003770 340 SWGLLALVILTACLGKIVGTF-VVSLSFKVPLREALALGILMNTKGLVELIVLNIGKD 396 (796)
Q Consensus 340 ~~~~~~~i~~~~~~~K~~~~~-l~~~~~~~~~~e~~~lgl~l~~kG~~~l~l~~~~~~ 396 (796)
.+.. +.+.+.....-+..++ +..+.+|++++.+..++...+.=|.-+++...-..+
T Consensus 88 G~~~-l~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i~ 144 (335)
T TIGR00698 88 GPNE-IVADTLILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVIK 144 (335)
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhccccC
Confidence 2322 2222333334444444 444789999999999998877777766655544433
No 87
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=94.30 E-value=1.1 Score=53.85 Aligned_cols=71 Identities=11% Similarity=0.156 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhhhccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHhhhhHHH
Q 003770 314 VSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLS--FKVPLREALALGILMNTKGLV 386 (796)
Q Consensus 314 ~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~--~~~~~~e~~~lgl~l~~kG~~ 386 (796)
...+.+++-....|++++...+.. .|..+..+++.+...-++.+.+.+++ .+++|..++.+|.++.+-.-+
T Consensus 74 IteIvL~I~LFa~Gl~L~~~~Lrr--~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 74 ISRILLCLQVFAVSVELPRKYMLK--HWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 346777888889999999988874 45555444444445555555555553 499999999999999987754
No 88
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=93.87 E-value=1.6 Score=53.81 Aligned_cols=44 Identities=9% Similarity=0.083 Sum_probs=31.3
Q ss_pred CCcceEEEEeccCCcChHHHHHHHHHHh--cCCCeEEEEEEeeecc
Q 003770 621 SNVSYTITVLFFGGRDDREALACGARMA--EHPGISFIVIRFLLAA 664 (796)
Q Consensus 621 ~~~~~~i~~~f~GG~ddreAL~~a~rma--~~~~v~ltvv~~~~~~ 664 (796)
.+...||++.+-+-.|-+..+.++.-.. +++...+.++|++.-.
T Consensus 455 ~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~ 500 (832)
T PLN03159 455 HDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELT 500 (832)
T ss_pred CCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeec
Confidence 4456799998887666667777766543 4456889999998643
No 89
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=93.65 E-value=12 Score=40.10 Aligned_cols=105 Identities=13% Similarity=0.138 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHhhccCchhHHhcchh--HHHHHHH-HH-HHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHH-hhc
Q 003770 96 LANLGLIFFMFLVGLELDPKSLRQTGKK--ALGIAIA-GI-SLPFALGIGSSFLLRETISKGVDSTSFLVFMGVAL-SIT 170 (796)
Q Consensus 96 l~~lgl~~~lF~~Gle~d~~~l~~~~~~--~~~ia~~-~~-~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~l-s~T 170 (796)
+.-..+.+.||..|+.++.+++++..|+ ....+.. .+ +.|++. +.++..++. + .....|..+ +.+
T Consensus 9 ~~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla-~~l~~~~~l----~-----~~~~~glvL~~~~ 78 (286)
T TIGR00841 9 ILLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTG-FLLAKVFKL----P-----PELAVGVLIVGCC 78 (286)
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHH-HHHHHHhCC----C-----HHHHHHHHheeeC
Confidence 3334488899999999999999887663 3333333 33 345433 444444421 1 122333333 111
Q ss_pred cHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003770 171 AFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVA 213 (796)
Q Consensus 171 s~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~~~ll~i~~~ 213 (796)
..++.+.++.+.---| ..++.+...++-+.+.+.+-+...
T Consensus 79 P~~~~s~v~t~~~~gn---~~la~~~~~~stlls~vt~Pl~l~ 118 (286)
T TIGR00841 79 PGGTASNVFTYLLKGD---MALSISMTTCSTLLALGMMPLLLY 118 (286)
T ss_pred CCchHHHHHHHHhCCC---HhhhhHHHHHHHHHHHHHHHHHHH
Confidence 1222333444432123 344455555666666665554443
No 90
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=93.27 E-value=0.49 Score=45.50 Aligned_cols=114 Identities=19% Similarity=0.249 Sum_probs=64.9
Q ss_pred CChhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhcch----hHHHHHHHH
Q 003770 56 QPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGK----KALGIAIAG 131 (796)
Q Consensus 56 ~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~----~~~~ia~~~ 131 (796)
+-...+-+++|+++|- ++...+..-. .| ......+.++|+.+|++.+|++--.+-+..-.+ ..+.++..-
T Consensus 21 LG~~~G~L~vgL~~G~--~~~~~p~~~~-~p---~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v 94 (154)
T TIGR01625 21 LGNAGGVLFVGLLLGH--FGATGPLTWY-IP---FSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALI 94 (154)
T ss_pred ecccHHHHHHHHHHHh--ccccCCccee-cC---hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHH
Confidence 3336788999999995 3332221111 12 235778999999999999999998876654333 223333344
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHH-HHhhccHHHHHHHHHhcC
Q 003770 132 ISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV-ALSITAFPVLARILAELK 183 (796)
Q Consensus 132 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~el~ 183 (796)
.++|.+++..+...+ +. .+ .....|+ +=+.|++|.+....+..+
T Consensus 95 ~~~~~~~~~~~~~~~---~~--~~---~~~~~G~~aGa~T~tpaL~aa~~~~~ 139 (154)
T TIGR01625 95 TVVPTLLVAVALIKL---LR--IN---YALTAGMLAGATTNTPALDAANDTLR 139 (154)
T ss_pred HHHHHHHHHHHHHHH---hC--CC---HHHHHHHHhccccChHHHHHHHHHhc
Confidence 444444443333322 21 11 2334444 347788888877655443
No 91
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=92.80 E-value=1.3 Score=51.73 Aligned_cols=119 Identities=18% Similarity=0.294 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhHHHHH
Q 003770 266 ATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLA 345 (796)
Q Consensus 266 ~~l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~ 345 (796)
..++.+.+...+++.+++++.++-+++|+++.. .+......-.-+ ....+++|......|+++|...+.. .+....
T Consensus 5 ~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~-~~~~~~~~~~~~-~~~~~~Lp~lLF~~g~~~~~~~l~~--~~~~i~ 80 (525)
T TIGR00831 5 ELVMLATAVAVTVKFIRLPYPIALILAGLLLGL-AGLLPEVPLDRE-IVLFLFLPPLLFEAAMNTDLRELRE--NFRPIA 80 (525)
T ss_pred HHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHh-ccccCCCCCCHH-HHHHHHHHHHHHHHHhcCCHHHHHH--HHHHHH
Confidence 334444555567777888888888888888762 111110000001 2235788999999999999988874 333333
Q ss_pred HHHHHHHH-HHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHH
Q 003770 346 LVILTACL-GKIVGTFVVSLSFKVPLREALALGILMNTKGLVEL 388 (796)
Q Consensus 346 ~i~~~~~~-~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~~~l 388 (796)
.+.+...+ .-.+.++...+..++||..++.+|.++++...+..
T Consensus 81 ~la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav 124 (525)
T TIGR00831 81 LIAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence 33233332 23333344444679999999999999998876654
No 92
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=92.65 E-value=6.6 Score=37.90 Aligned_cols=124 Identities=16% Similarity=0.188 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHhchh--HHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhh-hHHH
Q 003770 267 TLAAVLAAGFITDAIGIH--AMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQ-SWGL 343 (796)
Q Consensus 267 ~l~~~l~~~~~ae~~g~~--~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~-~~~~ 343 (796)
.+......+++.+.+|+. .++|+++++.++.-.....-.+-+.+... -.-+.-..+|.+++...+.... .+..
T Consensus 3 ~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~~~~~----~qviiG~~iG~~f~~~~l~~~~~~~~~ 78 (156)
T TIGR03082 3 LLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPWLLAL----AQVVIGILIGSRFTREVLAELKRLWPA 78 (156)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHHHHHH----HHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 344555566677788875 78888888887763221111222222222 2234457889999877665432 3433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhcc
Q 003770 344 LALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDR 397 (796)
Q Consensus 344 ~~~i~~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~~~l~l~~~~~~~ 397 (796)
.+...+..++.-++..++..+..++++.+++ ++ ..|-|.-++.+.....+.
T Consensus 79 ~l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~-La--~~PGGl~~m~~~A~~~ga 129 (156)
T TIGR03082 79 ALLSTVLLLALSALLAWLLARLTGVDPLTAF-LA--TSPGGASEMAALAAELGA 129 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HH--hCCchHHHHHHHHHHhCC
Confidence 4455555666677778888899999988875 33 468888887776654443
No 93
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=92.60 E-value=0.97 Score=53.12 Aligned_cols=90 Identities=14% Similarity=0.277 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhc-----ccCCChhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCch
Q 003770 41 ILLTRGLAFILR-----PLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPK 115 (796)
Q Consensus 41 l~~~~~~~~ll~-----~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~ 115 (796)
++++..+++++- .+++-.+.+-+++|+++|-.+.. .-+.+.++|+++|+|.+|++.-+.
T Consensus 15 lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~~----------------i~~~v~~~gl~lFvy~vG~~~Gp~ 78 (562)
T TIGR03802 15 LFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGIQ----------------IDPGVKAVFFALFIFAIGYEVGPQ 78 (562)
T ss_pred HHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCCC----------------CChHHHHHHHHHHHHHhhhccCHH
Confidence 333344444444 45567788999999999954321 112367799999999999999998
Q ss_pred hHHhcchhHHHHHHHH---HHHHHHHHHHHHHHH
Q 003770 116 SLRQTGKKALGIAIAG---ISLPFALGIGSSFLL 146 (796)
Q Consensus 116 ~l~~~~~~~~~ia~~~---~~i~~~~~~~~~~~l 146 (796)
-++.-+|+.+...+.+ +++.+++.+++++++
T Consensus 79 Ff~~l~~~g~~~~~~a~~~~~~~~~~~~~~~~~~ 112 (562)
T TIGR03802 79 FFASLKKDGLREIILALVFAVSGLITVYALAKIF 112 (562)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7765555444444443 333334444444333
No 94
>PRK04972 putative transporter; Provisional
Probab=92.45 E-value=0.97 Score=53.03 Aligned_cols=118 Identities=25% Similarity=0.367 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHH-hcccCCChhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchh
Q 003770 38 CLVILLTRGLAFI-LRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKS 116 (796)
Q Consensus 38 ~lil~~~~~~~~l-l~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~ 116 (796)
.+.+.+..+++.+ ++.+++-...|-+++|+++|-..... | ..+.++|+.+|+|.+|++.-+.-
T Consensus 18 f~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~~~~---------~-------~~~~~~gl~lF~~~vG~~~Gp~F 81 (558)
T PRK04972 18 FVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFSI---------N-------TDALNLGFMLFIFCVGVEAGPNF 81 (558)
T ss_pred HHHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCCCCC---------C-------hHHHHHHHHHHHHHHhhhhhHHH
Confidence 3333444444443 45566777789999999999532211 1 12458999999999999998876
Q ss_pred HH---hcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHH-HHhhccHHHHHHHHH
Q 003770 117 LR---QTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV-ALSITAFPVLARILA 180 (796)
Q Consensus 117 l~---~~~~~~~~ia~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~ 180 (796)
+. +.+.+...+++...++++++++.+.++++. + .....|+ +=+.|++|.+.....
T Consensus 82 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~G~~aGa~T~tp~l~~a~~ 140 (558)
T PRK04972 82 FSIFFRDGKNYLMLALVMVGSALVIALGLGKLFGW----D-----IGLTAGMLAGSMTSTPVLVGAGD 140 (558)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC----C-----HHHHHHHhhccccCcHHHHHHHH
Confidence 54 445555666666666666666655554332 1 1223332 336677777766544
No 95
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=91.80 E-value=1.6 Score=51.34 Aligned_cols=116 Identities=22% Similarity=0.337 Sum_probs=73.2
Q ss_pred ccCCChhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhH---HhcchhHHHHHH
Q 003770 53 PLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSL---RQTGKKALGIAI 129 (796)
Q Consensus 53 ~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l---~~~~~~~~~ia~ 129 (796)
++.+-...|-+++|+++|- ++...+.... .| .....++.++|+.+|++.+|++--++.+ ++.+.+...+++
T Consensus 412 p~~lg~~~g~l~~gl~~g~--~~~~~~~~~~-~p---~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~ 485 (562)
T TIGR03802 412 PLTLGTGGGALISGLVFGW--LRSKHPTFGN-IP---SSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGI 485 (562)
T ss_pred ceeehhhHHHHHHHHHHHH--hcccCCccee-cC---HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHH
Confidence 3444556788999999985 3322211111 12 3456789999999999999999887644 555566666777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHH-HHhhccHHHHHHHHHhc
Q 003770 130 AGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV-ALSITAFPVLARILAEL 182 (796)
Q Consensus 130 ~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~el 182 (796)
.-.++|.++++.+++++.. . ......|+ +=+.|++|.+.......
T Consensus 486 ~~~~~~~~~~~~~~~~~~~-----~---~~~~~~G~~aG~~t~t~~l~~a~~~~ 531 (562)
T TIGR03802 486 VVTILPLIITMLIGKYVLK-----Y---DPALLLGALAGARTATPALGAVLERA 531 (562)
T ss_pred HHHHHHHHHHHHHHHHHhC-----C---CHHHHHHHhhccCCCcHHHHHHHHhc
Confidence 7777777777666643322 1 12344443 44778888887765443
No 96
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=91.61 E-value=0.87 Score=54.01 Aligned_cols=121 Identities=15% Similarity=0.118 Sum_probs=78.2
Q ss_pred CCcceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHH
Q 003770 449 KAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVA 528 (796)
Q Consensus 449 ~~elriLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 528 (796)
....|||+|+....+...+++-+.-++.. .....+++|+..-.....+. .+.+++...
T Consensus 246 ~~~e~ilvcI~~~~~~e~liR~a~RlA~~---~~a~~~av~v~~~~~~~~~~-------------------~~~~~l~~~ 303 (890)
T COG2205 246 AARERILVCISGSPGSEKLIRRAARLASR---LHAKWTAVYVETPELHRLSE-------------------KEARRLHEN 303 (890)
T ss_pred cccceEEEEECCCCchHHHHHHHHHHHHH---hCCCeEEEEEeccccccccH-------------------HHHHHHHHH
Confidence 34469999999998899999988888864 44556888886422111110 112333333
Q ss_pred HHHhhhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCC
Q 003770 529 FEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPC 602 (796)
Q Consensus 529 f~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~Apc 602 (796)
++ .+++-+-. ..+..+ .++.+.|.++|++.+++-||+|-+++.+....+ .+++.+++++++|-
T Consensus 304 ~~-Lae~lGae--~~~l~~--~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~------~~~l~~~L~~~~~~ 366 (890)
T COG2205 304 LR-LAEELGAE--IVTLYG--GDVAKAIARYAREHNATKIVIGRSRRSRWRRLF------KGSLADRLAREAPG 366 (890)
T ss_pred HH-HHHHhCCe--EEEEeC--CcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHh------cccHHHHHHhcCCC
Confidence 33 33332222 223344 699999999999999999999987764332112 25678888888775
No 97
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=91.45 E-value=1.5 Score=43.11 Aligned_cols=108 Identities=19% Similarity=0.289 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHhccc---CCChhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHH-------HH
Q 003770 35 LQICLVILLTRGLAFILRPL---RQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLI-------FF 104 (796)
Q Consensus 35 ~~i~lil~~~~~~~~ll~~l---~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~-------~~ 104 (796)
..+.++=+..++.+++.||+ |++.----|+.|+++.-.+ |.... ..+....+..++-+|++ |-
T Consensus 16 ~aFa~vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~g-G~~Tg------G~kGlaDi~lfsGiglmGGaMlRDfA 88 (254)
T TIGR00808 16 TAFAVVGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVG-GVYTG------GEKGLADIAIFGGFGLMGGAMLRDLA 88 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHc-ccccC------CccccchhhhhcchhhhhhHHHHHHH
Confidence 33444444455556666665 6777777788888886321 11110 12333345555555544 23
Q ss_pred HHHHhhccCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003770 105 MFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRET 149 (796)
Q Consensus 105 lF~~Gle~d~~~l~~~~~~~~~ia~~~~~i~~~~~~~~~~~l~~~ 149 (796)
.-....|.|.+++||.+..-..--+.+..+||++|..+++.+++.
T Consensus 89 IvaTAf~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY~ 133 (254)
T TIGR00808 89 IVATAFEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAFGYR 133 (254)
T ss_pred HHHHhhcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 456788999999999999888888889999999999999998764
No 98
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=90.08 E-value=2.2 Score=41.15 Aligned_cols=97 Identities=20% Similarity=0.229 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhcccCCC--hhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhH
Q 003770 40 VILLTRGLAFILRPLRQP--RVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSL 117 (796)
Q Consensus 40 il~~~~~~~~ll~~l~~P--~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l 117 (796)
.+.++.+.+.+++++|+| ..+|-++++.++.-. +..+ ...-..+.+++.+++-..+|.+++.+.+
T Consensus 3 ~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~--~~~~-----------~~~P~~~~~~~qviiG~~iG~~f~~~~l 69 (156)
T TIGR03082 3 LLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLA--GGLE-----------ITLPPWLLALAQVVIGILIGSRFTREVL 69 (156)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhc--CCcc-----------CCCCHHHHHHHHHHHHHHHHccCCHHHH
Confidence 456677888999999988 566666666665521 1110 1122356677788888899999999998
Q ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003770 118 RQTGKKALGIAIAGISLPFALGIGSSFLLRETI 150 (796)
Q Consensus 118 ~~~~~~~~~ia~~~~~i~~~~~~~~~~~l~~~~ 150 (796)
++..+... ..+...++.+.++...++++....
T Consensus 70 ~~~~~~~~-~~l~~~~~~l~~~~~~~~~l~~~~ 101 (156)
T TIGR03082 70 AELKRLWP-AALLSTVLLLALSALLAWLLARLT 101 (156)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87665443 344555555666666666665543
No 99
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=88.42 E-value=6.7 Score=43.94 Aligned_cols=165 Identities=14% Similarity=0.130 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHhcc--cCCChhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccC
Q 003770 36 QICLVILLTRGLAFILRP--LRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELD 113 (796)
Q Consensus 36 ~i~lil~~~~~~~~ll~~--l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle~d 113 (796)
.+.+...+++.+...++. +.+|..+.-+++|+++.+.. +..+.. .-..+..+.++++++-+++..+=..++
T Consensus 223 ~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~-----~~~~~~--~~~~~~i~~I~~~sLdlfl~~AlmsL~ 295 (398)
T TIGR00210 223 LIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPL-----SFKKFP--WVAERAVSVIGNVSLSLFLAIALMSLQ 295 (398)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHH-----HHhCcc--ccchHHHHHHHHHHHHHHHHHHHHhCc
Confidence 344444455566665654 67999999999999998631 111110 112348999999999999999989999
Q ss_pred chhHHhcchhHHHHHHHHHHHHHHHHH-HHHHHHHhhhccCCchh-HHHHHHHHHHh--hccHHHHHHHHHhcCccCChh
Q 003770 114 PKSLRQTGKKALGIAIAGISLPFALGI-GSSFLLRETISKGVDST-SFLVFMGVALS--ITAFPVLARILAELKLLTADV 189 (796)
Q Consensus 114 ~~~l~~~~~~~~~ia~~~~~i~~~~~~-~~~~~l~~~~~~~~~~~-~~~l~lg~~ls--~Ts~~vv~~iL~el~ll~s~~ 189 (796)
+..+....-+.+.+.+.++++..+... .....++..+ +.. ..+-..|..+- +|+.+-...+-++.+-.++-.
T Consensus 296 L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~mg~~y----daaV~~ag~~G~~lGatptaianm~av~~~yg~s~~af 371 (398)
T TIGR00210 296 LWELADLAGPIALILLVQVMFMALYAIFVTFRLMGKDY----DAAVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQAF 371 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccchH----HHHHHhcccccccccchHHHHHHHHHHHhccCCCCcce
Confidence 999999999999999999888765443 2233333221 110 11123444443 344333334444556444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003770 190 GRMAMSAAAVNDVAAWILLALA 211 (796)
Q Consensus 190 g~l~ls~a~i~D~~~~~ll~i~ 211 (796)
=-.=+-.+.+-|+...+.....
T Consensus 372 ~ivPlvgaf~id~~n~~~i~~f 393 (398)
T TIGR00210 372 IVVPLVGAFFIDIINALVIKQF 393 (398)
T ss_pred ehhhhHHHHHHHHhhHHHHHHH
Confidence 4444567788888776665544
No 100
>COG2855 Predicted membrane protein [Function unknown]
Probab=88.33 E-value=41 Score=36.39 Aligned_cols=87 Identities=22% Similarity=0.202 Sum_probs=59.7
Q ss_pred hcccCCChhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhcchhHHHHHHH
Q 003770 51 LRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIA 130 (796)
Q Consensus 51 l~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia~~ 130 (796)
....++|..+--|+.||++|.. ...+. ... ..-.-.-..+-++|.+ +.|.+++++++...+.+.+.+-..
T Consensus 32 ~~~~~l~al~lAIllGi~l~~l--~~~~~---~~~-~GI~fs~k~LLr~gIv----LlG~~ltl~~i~~~G~~~v~~~~~ 101 (334)
T COG2855 32 SIHLGLSALTLAILLGILLGIL--PQIPA---QTS-AGITFSSKKLLRLGIV----LLGFRLTLSDIADVGGSGVLIIAI 101 (334)
T ss_pred hhhcCchHHHHHHHHHHHHhcc--ccchh---hhc-cchhhhHHHHHHHHHH----HHcceeeHHHHHHcCccHHHHHHH
Confidence 4456799999999999999932 11110 000 0011223456666666 568999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003770 131 GISLPFALGIGSSFLLR 147 (796)
Q Consensus 131 ~~~i~~~~~~~~~~~l~ 147 (796)
.+..++++++.++.+++
T Consensus 102 ~l~~t~~~~~~lg~~lg 118 (334)
T COG2855 102 TLSSTFLFAYFLGKLLG 118 (334)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 88878887777666554
No 101
>COG2985 Predicted permease [General function prediction only]
Probab=87.34 E-value=2.2 Score=47.71 Aligned_cols=78 Identities=28% Similarity=0.479 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhhccCchh---HHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHH-HHhhccHH
Q 003770 98 NLGLIFFMFLVGLELDPKS---LRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV-ALSITAFP 173 (796)
Q Consensus 98 ~lgl~~~lF~~Gle~d~~~---l~~~~~~~~~ia~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~ 173 (796)
++|+++|.+.+|+|.-+.. +|+.+++-..+++.- ++.+..+++.+...+. ++ ..+..|. +-+.|+.|
T Consensus 62 ~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli----vi~~~~~a~~l~k~~~--~~---~~~~~Gm~sGAlTsTP 132 (544)
T COG2985 62 ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI----VIAALLLAWVLHKLFG--ID---LGLIAGMFSGALTSTP 132 (544)
T ss_pred hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHhhcC--CC---HHHhhhhhcccccCCc
Confidence 8999999999999998765 566666666555543 3344445555554442 21 1222222 22456655
Q ss_pred HHH---HHHHhcCc
Q 003770 174 VLA---RILAELKL 184 (796)
Q Consensus 174 vv~---~iL~el~l 184 (796)
... .++.|++.
T Consensus 133 ~L~aa~~~L~~lg~ 146 (544)
T COG2985 133 GLGAAQDILRELGA 146 (544)
T ss_pred hhHHHHHHHHhhcc
Confidence 554 45666663
No 102
>PRK10490 sensor protein KdpD; Provisional
Probab=87.14 E-value=2.7 Score=52.51 Aligned_cols=124 Identities=9% Similarity=0.032 Sum_probs=74.3
Q ss_pred cceEEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEeeecccccCCccccCCcCccccHHHHHHHHHhhcCCCCceEEE
Q 003770 623 VSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYE 702 (796)
Q Consensus 623 ~~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~~~ 702 (796)
...||+|...|+|..+..++.|.|||++-+++++++++.+.+.... ..+..+++. +.+ ++.++. +.. +.
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~-----~~~~~~~l~-~~~-~lA~~l--Ga~--~~ 317 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRL-----PEKKRRAIL-SAL-RLAQEL--GAE--TA 317 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcC-----CHHHHHHHH-HHH-HHHHHc--CCE--EE
Confidence 4579999999999999999999999999999999999975432110 011111111 122 133333 222 22
Q ss_pred EEEecChHHHHHHHHhccCCCEEEEccCCCchhhcccccCCCCCccccchhhhccCCCCceeEEEE
Q 003770 703 ERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLII 768 (796)
Q Consensus 703 e~~v~~~~~~~~~l~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~SvLvv 768 (796)
...-.|..+++....+..+.+.+|+|+++.+ .| + --|-+-|-|.-..-. .-|.||
T Consensus 318 ~~~~~dva~~i~~~A~~~~vt~IViG~s~~~-------~~--~-~~~s~~~~l~r~~~~-idi~iv 372 (895)
T PRK10490 318 TLSDPAEEKAVLRYAREHNLGKIIIGRRASR-------RW--W-RRESFADRLARLGPD-LDLVIV 372 (895)
T ss_pred EEeCCCHHHHHHHHHHHhCCCEEEECCCCCC-------CC--c-cCCCHHHHHHHhCCC-CCEEEE
Confidence 3233444444433334444999999999733 14 1 135677766654322 567777
No 103
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=86.64 E-value=5.2 Score=44.60 Aligned_cols=135 Identities=19% Similarity=0.277 Sum_probs=73.8
Q ss_pred HHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHH-HhhhhccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003770 286 MFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLY-FVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSL 364 (796)
Q Consensus 286 ~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~Plf-F~~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~ 364 (796)
++...++|.++.+..-+.++-.+.+..++..+++|.+ |..++-..+...+.+ .|. +.+..++..+.-++..++..+
T Consensus 9 i~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~ 85 (385)
T PF03547_consen 9 IFLIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLS--LWF-IPVFAFIIFILGLLLGFLLSR 85 (385)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh--hHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666665556677788889999999999998 555554444443432 232 222223333333445556666
Q ss_pred hcCCChHHHH--HHHHHhhhhHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHHhHHHHHHHHhh
Q 003770 365 SFKVPLREAL--ALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYK 428 (796)
Q Consensus 365 ~~~~~~~e~~--~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~~~lvl~~lv~t~i~~pl~~~l~~ 428 (796)
+++.+.+++. .++...+.-|.+.+-+....+.. +.....++..++..++.-++...+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~-----~~~~~~~~~~~~~~i~~~~~~~~l~~ 146 (385)
T PF03547_consen 86 LFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGE-----RGVAYAIIFDVVNNIILWSLGYFLLE 146 (385)
T ss_pred hcCCCcccceEEEecccCCcchhhHHHHHHHHhcc-----hhhhhehHHHHhhHHHHHHHHHHhhc
Confidence 6666655543 33444566677777666554443 22222223334444444455544443
No 104
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=85.19 E-value=3.4 Score=43.35 Aligned_cols=108 Identities=8% Similarity=0.015 Sum_probs=62.4
Q ss_pred EeccCCcChHHHHHHHHHHhcCC-CeEEEEEEeeecccccCCccccCCcCccccHHHHHHHHHhhcCCCCceEEEE-EE-
Q 003770 629 VLFFGGRDDREALACGARMAEHP-GISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEE-RL- 705 (796)
Q Consensus 629 ~~f~GG~ddreAL~~a~rma~~~-~v~ltvv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~~~e-~~- 705 (796)
+.+.=.|.|+-|++.|.|+.++. +.++|++.+-+.+.. +++.+++....- -++....+ ..
T Consensus 30 ~~~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~---------------~~~~lr~aLAmG--aD~avli~d~~~ 92 (256)
T PRK03359 30 ADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALT---------------NAKGRKDVLSRG--PDELIVVIDDQF 92 (256)
T ss_pred CccccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchh---------------hHHHHHHHHHcC--CCEEEEEecCcc
Confidence 34455689999999999999875 489999999764421 134555555442 22222221 11
Q ss_pred -ecChHHHHHH----HHhccCCCEEEEccCC---Cchh-hcccccCCCCCccccchhh
Q 003770 706 -VRNTAETIAV----IREVSRCNLLLVGRMP---DGEL-ALALSTRSDCLELGPVGSL 754 (796)
Q Consensus 706 -v~~~~~~~~~----l~~~~~~DL~iVGr~~---~~~~-~~gl~~w~e~~eLG~igd~ 754 (796)
-.|...|..+ +++. +|||++-|+.. ++.+ -.-+.+|-..|-+..+-++
T Consensus 93 ~g~D~~~tA~~La~ai~~~-~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~l 149 (256)
T PRK03359 93 EQALPQQTASALAAAAQKA-GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSKI 149 (256)
T ss_pred cCcCHHHHHHHHHHHHHHh-CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEEE
Confidence 1233344443 4442 29999999987 2222 2233344455666665554
No 105
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=85.19 E-value=9 Score=38.30 Aligned_cols=49 Identities=24% Similarity=0.396 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHH
Q 003770 344 LALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLN 392 (796)
Q Consensus 344 ~~~i~~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~~~l~l~~ 392 (796)
.+.+-+...++-++++++.+++.++|++|++.++..++--..-+..+..
T Consensus 58 ~Llipl~tIlGSllgg~l~~~ll~~~~~~~lav~sG~GwYSlsg~~i~~ 106 (191)
T PF03956_consen 58 ALLIPLATILGSLLGGLLASLLLGLSLKESLAVASGFGWYSLSGVLITQ 106 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccCcHHHhHHHHHHh
Confidence 4556677788899999999999999999999998877666655555443
No 106
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=85.11 E-value=17 Score=39.49 Aligned_cols=134 Identities=18% Similarity=0.239 Sum_probs=77.3
Q ss_pred cCCChhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhcchhHHHHHHHHHH
Q 003770 54 LRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGIS 133 (796)
Q Consensus 54 l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~ 133 (796)
++.|.+++.++ |+++...... +|.--.+.++.+++...-+-||..|..++.+.+++.++........-.+
T Consensus 180 ~~nP~iia~i~-Gl~~~~~~i~---------lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~kli 249 (321)
T TIGR00946 180 IKFPPLWAPLL-SVILSLVGFK---------MPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFL 249 (321)
T ss_pred HhCCChHHHHH-HHHHHHHhhc---------CcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHH
Confidence 46777776654 5666643221 2444467799999999999999999999998888777777666666554
Q ss_pred -HHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHH
Q 003770 134 -LPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLA 209 (796)
Q Consensus 134 -i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~~~ll~ 209 (796)
.|++. +.+...+.. + .......+..+.+.+++...++.+.--.+. +.+-+...++-+++++.+.
T Consensus 250 l~P~i~-~~~~~~~~l----~----~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~---~~aa~~v~~sT~ls~~tlp 314 (321)
T TIGR00946 250 VQPAVM-AGISKLIGL----R----GLELSVAILQAALPGGAVAAVLATEYEVDV---ELASTAVTLSTVLSLISLP 314 (321)
T ss_pred HHHHHH-HHHHHHhCC----C----hHHHHHHHHHHcCChhhHHHHHHHHhCCCH---HHHHHHHHHHHHHHHHHHH
Confidence 45443 434433321 1 122334444455555555556554321333 3444444444445444444
No 107
>PRK04972 putative transporter; Provisional
Probab=85.02 E-value=8.4 Score=45.32 Aligned_cols=128 Identities=19% Similarity=0.221 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhcc-----cCCChhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCch
Q 003770 41 ILLTRGLAFILRP-----LRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPK 115 (796)
Q Consensus 41 l~~~~~~~~ll~~-----l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~ 115 (796)
+++..+++.+-=+ +++-.--|.+++|+++|- ++...+.... +| .....++.++|+.+|+..+|+.--.+
T Consensus 390 i~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~--~~~~~~~~~~-~p---~~a~~~l~~~GL~lFla~vGl~aG~~ 463 (558)
T PRK04972 390 FIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGF--LRANHPTFGY-IP---QGALNMVKEFGLMVFMAGVGLSAGSG 463 (558)
T ss_pred HHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHh--ccccCCCcee-eC---HHHHHHHHHHhHHHHHHHHHHhhhHH
Confidence 3444444444333 334445678999999984 3333332221 12 34577899999999999999987765
Q ss_pred h---HHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHH-HHhhccHHHHHHHHHhc
Q 003770 116 S---LRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV-ALSITAFPVLARILAEL 182 (796)
Q Consensus 116 ~---l~~~~~~~~~ia~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~el 182 (796)
. +++.+.+.+.++..-.++|.++++.+++++... .....+|+ +=+.|++|.+.......
T Consensus 464 f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~--------~~~~~~G~~aG~~t~~~~l~~~~~~~ 526 (558)
T PRK04972 464 INNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVLRM--------NRALLFGAIMGARTCAPAMEIISDTA 526 (558)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CHHHHHHHHhCCCCCcHHHHHHHhhc
Confidence 4 445566666777777777877777777544321 12344443 45778888777765443
No 108
>PRK03818 putative transporter; Validated
Probab=84.93 E-value=22 Score=41.85 Aligned_cols=106 Identities=22% Similarity=0.327 Sum_probs=68.7
Q ss_pred hHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHh----cchhHHHHHHHHHHH
Q 003770 59 VIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQ----TGKKALGIAIAGISL 134 (796)
Q Consensus 59 iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~----~~~~~~~ia~~~~~i 134 (796)
.-|-+++|+++|- ++...+.... .| ......+.++|+.+|+..+|++--..-+.. .+.+.+.+++.-.++
T Consensus 403 ~~G~L~~gl~~g~--~~~~~~~~~~-~p---~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~ 476 (552)
T PRK03818 403 AGGPLIVALILGR--IGSIGKLYWF-MP---PSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAV 476 (552)
T ss_pred chHHHHHHHHHHh--ccCCCCceee-cC---HHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHH
Confidence 4578999999984 2332221111 22 335678999999999999999987765543 355666777777777
Q ss_pred HHHHHHHHHHHHHhhhccCCchhHHHHHHHH-HHhhccHHHHHHH
Q 003770 135 PFALGIGSSFLLRETISKGVDSTSFLVFMGV-ALSITAFPVLARI 178 (796)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~i 178 (796)
|.++++.++.++... .....+|+ +=+.|++|.+...
T Consensus 477 ~~~~~~~~~~~~~~~--------~~~~~~G~~aG~~t~tp~l~~a 513 (552)
T PRK03818 477 PLLIVGILARMLAKM--------NYLTLCGMLAGSMTDPPALAFA 513 (552)
T ss_pred HHHHHHHHHHHHHcC--------CHHHHHHHHhccCCCcHHHHHH
Confidence 887777775444321 12344443 4577888877665
No 109
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=84.83 E-value=7.3 Score=41.67 Aligned_cols=75 Identities=19% Similarity=0.223 Sum_probs=54.6
Q ss_pred hHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhcchhHHHHHHHHHHHHHHH
Q 003770 59 VIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFAL 138 (796)
Q Consensus 59 iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~i~~~~ 138 (796)
.+--++.|+++|+..- .. .+.++.-..+++.++.|..|.++|++.+.+.+.+.+.+++..+.+++.+
T Consensus 169 lilpILiGmilGNld~-~~------------~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~ 235 (312)
T PRK12460 169 ALLPLVLGMILGNLDP-DM------------RKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFF 235 (312)
T ss_pred HHHHHHHHHHHhccch-hh------------HHHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 5556677888886211 11 1122222234788899999999999999999999999999988888888
Q ss_pred HHHHHHHH
Q 003770 139 GIGSSFLL 146 (796)
Q Consensus 139 ~~~~~~~l 146 (796)
++.+..++
T Consensus 236 ~~~i~rll 243 (312)
T PRK12460 236 NIFADRLV 243 (312)
T ss_pred HHHHHHHh
Confidence 87766555
No 110
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=82.85 E-value=43 Score=34.17 Aligned_cols=102 Identities=16% Similarity=0.129 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHhcccCC----ChhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccC
Q 003770 38 CLVILLTRGLAFILRPLRQ----PRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELD 113 (796)
Q Consensus 38 ~lil~~~~~~~~ll~~l~~----P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle~d 113 (796)
.+.++.-.+.-++.||.|- |-.++.++...++=. +|. ++.++. ++.++++.+- |=.-.-|..=+--+
T Consensus 12 ~lTl~~y~~a~~l~~r~~~~~l~PlLv~~~~li~~L~~--~~i--~Y~~Y~---~g~~~i~~lL--gPAtVAlAvPLYkq 82 (230)
T COG1346 12 LLTLLAYFAAKRLYKRTKSPFLNPLLVATVLLIAFLLL--FGI--SYEDYM---KGGQWINFLL--GPATVALAVPLYKQ 82 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHH--cCC--CHHHHh---cccHHHHHHH--HHHHHHHhhHHHHH
Confidence 3333334445566677663 555555544444332 121 122221 2334444442 22233344444568
Q ss_pred chhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003770 114 PKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRE 148 (796)
Q Consensus 114 ~~~l~~~~~~~~~ia~~~~~i~~~~~~~~~~~l~~ 148 (796)
++.+||+|+..+.-.+.+.++.+..+..++.+++.
T Consensus 83 ~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~ 117 (230)
T COG1346 83 RHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGL 117 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 89999999999888888888888888877777753
No 111
>TIGR00930 2a30 K-Cl cotransporter.
Probab=82.80 E-value=1.4e+02 Score=37.61 Aligned_cols=130 Identities=8% Similarity=0.145 Sum_probs=77.3
Q ss_pred ceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHH
Q 003770 452 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEA 531 (796)
Q Consensus 452 lriLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 531 (796)
-++|+.+.++++-+.+++++..+.+. ..+ ..+.|+++-+.+... .+ .++..+..+.
T Consensus 576 PqiLvl~~~p~~~~~Ll~f~~~l~~~---~gl-~i~~~v~~~~~~~~~----~~----------------~~~~~~~~~~ 631 (953)
T TIGR00930 576 PQCLVLTGPPVCRPALLDFASQFTKG---KGL-MICGSVIQGPRLECV----KE----------------AQAAEAKIQT 631 (953)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHhccC---CcE-EEEEEEecCchhhhH----HH----------------HHHHHHHHHH
Confidence 57999999999999999999999843 344 456688875422111 00 1112222233
Q ss_pred hhhccCeEEEEeEEecCCCChHHHHHHHHHh-----cCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEE
Q 003770 532 FQQLSRVSVRPMTAISSMSDMHEDICTTAES-----KRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 606 (796)
Q Consensus 532 ~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e-----~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgI 606 (796)
+-++.+++.=..+.++ +++.+++.++.+- .+.+.++|||...|+.+... ....+-++.+... ++... +
T Consensus 632 ~~~~~~~~~f~~~~~~--~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~--~~~~y~~~i~~a~-~~~~~--v 704 (953)
T TIGR00930 632 WLEKNKVKAFYAVVVA--DDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAEPR--AWETYIGIIHDAF-DAHLA--V 704 (953)
T ss_pred HHHHhCCCeEEEEecC--CCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhccch--hHHHHHHHHHHHH-HcCCc--E
Confidence 3333334332334445 6999999999887 56899999999888754421 1123444444433 44454 4
Q ss_pred EecCCC
Q 003770 607 LIDRGL 612 (796)
Q Consensus 607 lvdrg~ 612 (796)
.+-|+.
T Consensus 705 ~i~r~~ 710 (953)
T TIGR00930 705 VVVRNS 710 (953)
T ss_pred EEEccc
Confidence 455653
No 112
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=82.62 E-value=10 Score=42.17 Aligned_cols=115 Identities=9% Similarity=0.074 Sum_probs=61.9
Q ss_pred HHHHHHHHhhhhccccchhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH-H-hhhhHHHHHHHHH
Q 003770 316 GIFLPLYFVSSGLKTNIATIQGLQ-SWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGI-L-MNTKGLVELIVLN 392 (796)
Q Consensus 316 ~~~~PlfF~~~G~~~dl~~l~~~~-~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl-~-l~~kG~~~l~l~~ 392 (796)
++++-.||..+|+..++..+..+. .......+.....+...+.....+..++.+..-.+..|- . .+-.|. +.+...
T Consensus 67 ~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~GGhGT-Aaa~g~ 145 (368)
T PF03616_consen 67 DFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFTGGHGT-AAAFGP 145 (368)
T ss_pred HHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhccccccCCccH-HHHHHH
Confidence 566678999999999987765432 122222222333445555555566777887766654432 1 122232 233334
Q ss_pred hhhcc-CCCChhHHHHHH--HHHHHHHHhHHHHHHHHhhhhh
Q 003770 393 IGKDR-KVLNDQVFAIMI--LMAVVTTFMTTPLVMAVYKPAR 431 (796)
Q Consensus 393 ~~~~~-~~i~~~~~~~lv--l~~lv~t~i~~pl~~~l~~~~~ 431 (796)
...+. |.-+.....+.. +..+.-.++..|+.+|+.|+.+
T Consensus 146 ~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~~ 187 (368)
T PF03616_consen 146 TFEELYGWEGATSVGMAAATFGLVVGGLIGGPIANWLIRKGK 187 (368)
T ss_pred HHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44444 554444333322 2233335667899999876544
No 113
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=81.44 E-value=36 Score=38.74 Aligned_cols=122 Identities=16% Similarity=0.259 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCC--CCChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhHH
Q 003770 265 CATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPK--EGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWG 342 (796)
Q Consensus 265 ~~~l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~--~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~ 342 (796)
.+++.+..+++.+++.+..+.+.-..+.|++..- -.+......-.-+.+. .+++|+-....|+++|...+.+ .|.
T Consensus 12 ~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~~-~l~l~ilLf~~g~~l~~~~l~~--~~~ 88 (429)
T COG0025 12 LLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFL-VLFLAILLFAGGLELDLRELRR--VWR 88 (429)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccccccCChHHHH-HHHHHHHHHHhHhcCCHHHHHH--hHH
Confidence 3444555555556666666555555555554431 0111111111112222 6777888888999999998874 344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHhhhhHHHHHH
Q 003770 343 LLALVILTACLGKIVGTFVVSLSF--KVPLREALALGILMNTKGLVELI 389 (796)
Q Consensus 343 ~~~~i~~~~~~~K~~~~~l~~~~~--~~~~~e~~~lgl~l~~kG~~~l~ 389 (796)
.+..+.....+...+++....++. ++|+..++.+|.++++-.-+.+.
T Consensus 89 ~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~ 137 (429)
T COG0025 89 SILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVS 137 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhH
Confidence 444444444455555555555554 88999999999988887766553
No 114
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=80.76 E-value=73 Score=32.83 Aligned_cols=106 Identities=12% Similarity=0.143 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHH
Q 003770 308 EKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVE 387 (796)
Q Consensus 308 ~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~~~ 387 (796)
.-+.+-+-.+-.|+| =+...+. ..|..+..-++++.+.-+++++..++.+|.+.. +-..+.+|..-.
T Consensus 69 ~lLgPAtVALAvPLY-------~q~~~lk--~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~----~~~Sl~pKSVTt 135 (232)
T PRK04288 69 FFLEPATIAFAIPLY-------KKRDVLK--KYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNA----VMASMLPQAATT 135 (232)
T ss_pred HHHHHHHHHHHHHHH-------HhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhHhhhH
Confidence 334444445556655 2233444 244444555556666777888888999998753 334467899888
Q ss_pred HHHHHhhhccCCCChhHHHHHHHHHHHHHHhHHHHHHHH
Q 003770 388 LIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAV 426 (796)
Q Consensus 388 l~l~~~~~~~~~i~~~~~~~lvl~~lv~t~i~~pl~~~l 426 (796)
-+...+..+.|-+.+-+...++++-++-..+.+++.+++
T Consensus 136 PIAm~is~~iGG~psLtA~~ViitGi~Gai~g~~llk~~ 174 (232)
T PRK04288 136 AIALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLKLF 174 (232)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 888888888887665555555455555444455555543
No 115
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=80.70 E-value=1.8 Score=36.86 Aligned_cols=48 Identities=21% Similarity=0.062 Sum_probs=38.3
Q ss_pred ChHHHHHHHHHhcCccEEEecCccccccCCccccccchhH-HHHHHHhhcCCCce
Q 003770 551 DMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFR-WVNQRVLKHAPCSV 604 (796)
Q Consensus 551 ~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~-~vn~~vl~~ApcsV 604 (796)
.+.+.+.+.|++.++|.|+.|.|.....+... .+ ++..++.+.++|+|
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~------~~~~~~~~~~~~~~~~v 83 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAGRRL------GASANVLVVIKGAGIPV 83 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhhhcc------CchhhhhhcccccCCce
Confidence 78899999999999999999999775444333 22 45668899999986
No 116
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=80.59 E-value=4.1 Score=44.05 Aligned_cols=113 Identities=18% Similarity=0.235 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhhhhccccchhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHH
Q 003770 312 DLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALV-ILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIV 390 (796)
Q Consensus 312 ~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~i-~~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~~~l~l 390 (796)
.+.++++=|+-|.-+|..+|+..+.. ..+. .++ -..+-++- ..+++.+..+|++.+|+..+|.+=+.-|-.++.+
T Consensus 101 gi~~gl~P~LIFlGIGAMtDFgplla-nP~~--~ll~gaaAQ~Gi-F~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~ 176 (399)
T TIGR03136 101 TFSNSLVACILFFGIGAMSDISFILA-RPWA--SITVALFAEMGT-FATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFA 176 (399)
T ss_pred HHhcccHHHHHHHhccHHhcchHHHh-ChHH--HHHHHHHHHhhH-HHHHHHHHHcCCCHHHhhHHhhcccCCccHHHHH
Confidence 34457888888999999999987653 2221 122 12333343 3455667778999999999999878888777766
Q ss_pred HHhhhcc--CCCChhHHHHHHHHHHHHHHhHHHHHHHHhhhhhh
Q 003770 391 LNIGKDR--KVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARR 432 (796)
Q Consensus 391 ~~~~~~~--~~i~~~~~~~lvl~~lv~t~i~~pl~~~l~~~~~~ 432 (796)
.+..-.. +.+.-..|+-| . +.=.+-||+++.+-.+++|
T Consensus 177 s~kLAp~Llg~IaVAAYsYM---a-LVPiiqPpimklLttkkER 216 (399)
T TIGR03136 177 SLILAKDLFVPISIIAYLYL---S-LTYAGYPYLIKLLVPKKYR 216 (399)
T ss_pred HHhhhhHhHHHHHHHHHHHH---H-HHhcccchHHHhhcCHHHH
Confidence 6542211 22222333333 2 2245678888877644444
No 117
>PRK12342 hypothetical protein; Provisional
Probab=80.29 E-value=4.7 Score=42.18 Aligned_cols=95 Identities=16% Similarity=0.073 Sum_probs=55.8
Q ss_pred EeccCCcChHHHHHHHHHHhcCCCeEEEEEEeeecccccCCccccCCcCccccHHHHHHHHHhhcCCCCce-EEEEEEe-
Q 003770 629 VLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSV-RYEERLV- 706 (796)
Q Consensus 629 ~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v-~~~e~~v- 706 (796)
+.+.=+|.|+-|++.|.|+.+ .+.++|++.+-+..... ++++.+....- -++. .......
T Consensus 29 ~~~~iNp~D~~AlE~AlrLk~-~g~~Vtvls~Gp~~a~~---------------~~l~r~alamG--aD~avli~d~~~~ 90 (254)
T PRK12342 29 AEAKISQFDLNAIEAASQLAT-DGDEIAALTVGGSLLQN---------------SKVRKDVLSRG--PHSLYLVQDAQLE 90 (254)
T ss_pred CCccCChhhHHHHHHHHHHhh-cCCEEEEEEeCCChHhH---------------HHHHHHHHHcC--CCEEEEEecCccC
Confidence 445557999999999999995 57899999987543211 22445544442 2222 2221111
Q ss_pred -cChHHHHH----HHHhccCCCEEEEccCC---C----chhhcccccC
Q 003770 707 -RNTAETIA----VIREVSRCNLLLVGRMP---D----GELALALSTR 742 (796)
Q Consensus 707 -~~~~~~~~----~l~~~~~~DL~iVGr~~---~----~~~~~gl~~w 742 (796)
.|.-.|.. +++.. +|||++-|+.. . ++++.++-+|
T Consensus 91 g~D~~ata~~La~~i~~~-~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~ 137 (254)
T PRK12342 91 HALPLDTAKALAAAIEKI-GFDLLLFGEGSGDLYAQQVGLLLGELLQL 137 (254)
T ss_pred CCCHHHHHHHHHHHHHHh-CCCEEEEcCCcccCCCCCHHHHHHHHhCC
Confidence 23322333 34443 39999999987 1 4455555555
No 118
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=77.34 E-value=0.98 Score=50.37 Aligned_cols=113 Identities=21% Similarity=0.374 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCChh--HHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhHHHHH
Q 003770 268 LAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFA--NALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLA 345 (796)
Q Consensus 268 l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~~~~~~--~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~ 345 (796)
++..+.+..+.+.++++..+|-.++|+++... .++ +.-.+..+.+ .++.+++.....|.++|...+.. .+....
T Consensus 5 i~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~-~~~~~~~~~~~~~~l-~~i~l~~llF~~G~~~d~~~l~~--~~~~~~ 80 (380)
T PF00999_consen 5 ILLAFVAGILFRRLGIPSIIGYILVGIVLGPS-GLGLLEPDNPSFELL-AEIGLAFLLFEAGLELDIKELRR--NWRRAL 80 (380)
T ss_dssp --------------------------------------------S-SS-HHHHS--SSHHHHTTGGGG------------
T ss_pred eehHHHHHHHHHHhCCCHHHHHHHheeehhhh-hhhhccchhhHHHHH-HHHHHHHHHHHHHHhhccccccc--cccccc
Confidence 33344455578899999999999999999742 222 1112445555 37788888889999999988864 333333
Q ss_pred HHHHHHHHHHHHH-HHHHHH---hcCCChHHHHHHHHHhhhhH
Q 003770 346 LVILTACLGKIVG-TFVVSL---SFKVPLREALALGILMNTKG 384 (796)
Q Consensus 346 ~i~~~~~~~K~~~-~~l~~~---~~~~~~~e~~~lgl~l~~kG 384 (796)
...+..++.-++. ++.... ..++++.+++.+|..+++-.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts 123 (380)
T PF00999_consen 81 ALGLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATS 123 (380)
T ss_dssp ---------------------------------TTHHHHTT--
T ss_pred ccccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhccc
Confidence 3333333344444 444443 47889999999988776544
No 119
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=76.88 E-value=30 Score=38.59 Aligned_cols=112 Identities=13% Similarity=0.228 Sum_probs=67.3
Q ss_pred HHHHHhchhHHHHHHHHHhhcCCCCChhHHHH-HHHHHHHHHHHHHHHHhhhhccccchhhhhhhhHHHHHHHHHHHHHH
Q 003770 276 FITDAIGIHAMFGAFVVGVLVPKEGPFANALV-EKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLG 354 (796)
Q Consensus 276 ~~ae~~g~~~~lgafvaGl~l~~~~~~~~~l~-~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~ 354 (796)
.++..+|....+=-...|++...++-.+-..- ..+.+++..+-+.+...-.|++++++.+.. ..|+...+..+..++.
T Consensus 24 ~~ssrfGvP~LllFl~iGm~aG~dGlg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r~-a~~palsLATlGVl~T 102 (574)
T COG3263 24 LISSRFGVPLLLLFLSIGMLAGVDGLGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFRV-AAGPALSLATLGVLIT 102 (574)
T ss_pred HHHHHcCchHHHHHHHHHHHcCCCcccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHHH-HhhhhHHHHHHHHHHH
Confidence 34445555544444455555554221111111 245555556666666777889998887764 3454444444455555
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHH
Q 003770 355 KIVGTFVVSLSFKVPLREALALGILMNTKGLVEL 388 (796)
Q Consensus 355 K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~~~l 388 (796)
-.+....+.+.++.+|-|++.+|.+.+..-..+.
T Consensus 103 s~Ltg~aA~~ll~l~wle~~LiGAiVgSTDAAAV 136 (574)
T COG3263 103 SGLTGVAAAYLLNLDWLEGLLIGAIVGSTDAAAV 136 (574)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHhhccccHHHH
Confidence 5566667788899999999999998765544443
No 120
>COG2431 Predicted membrane protein [Function unknown]
Probab=76.72 E-value=44 Score=35.02 Aligned_cols=77 Identities=19% Similarity=0.291 Sum_probs=48.3
Q ss_pred hhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccC---chhHH-hcchhHHHHHHHHHH
Q 003770 58 RVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELD---PKSLR-QTGKKALGIAIAGIS 133 (796)
Q Consensus 58 ~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle~d---~~~l~-~~~~~~~~ia~~~~~ 133 (796)
.+.+..+.|+++|-..-.. ....+...+..+.+++|.+|.++. ....+ .-.|+.+..++...+
T Consensus 108 k~~~~vl~g~~~G~l~~~~-------------~~~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Lnk~gl~l~~i~il 174 (297)
T COG2431 108 KLLGVVLLGLALGLLTGSF-------------LNFPENASEYLLYLLLFLIGIQLGNSGISLRQVLLNKRGLILAFITLL 174 (297)
T ss_pred HHHHHHHHHHHHHHHhccc-------------ccCchhHHHHHHHHHHHHHHHHhccccchhhhHHhccchHHHHHHHHH
Confidence 5667788888888422111 112456778899999999999987 22111 222667777776666
Q ss_pred HHHHHHHHHHHHHH
Q 003770 134 LPFALGIGSSFLLR 147 (796)
Q Consensus 134 i~~~~~~~~~~~l~ 147 (796)
-..+-|.+.++++.
T Consensus 175 ssliGG~iaa~~l~ 188 (297)
T COG2431 175 SSLIGGLIAAFLLD 188 (297)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666665555554
No 121
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=76.68 E-value=93 Score=31.80 Aligned_cols=110 Identities=14% Similarity=0.224 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhh
Q 003770 304 NALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTK 383 (796)
Q Consensus 304 ~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~k 383 (796)
+.+..-+.+-+-.+-.|+| =++..+. ..|..+..-++++.+.-++.+++.+++++.+.. +.. .+.||
T Consensus 62 ~~i~~lLgPAtVAlAvPLY-------kq~~~ik--~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~--~~~--Sl~Pk 128 (230)
T COG1346 62 QWINFLLGPATVALAVPLY-------KQRHLIK--RHWKPILAGVLVGSVVAIISGVLLAKLFGLSPE--LIL--SLLPK 128 (230)
T ss_pred HHHHHHHHHHHHHHhhHHH-------HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHH--Hhccc
Confidence 3444445555555666665 2234444 356556666667777778888899999998744 333 35789
Q ss_pred HHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHHhHHHHHHHH
Q 003770 384 GLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAV 426 (796)
Q Consensus 384 G~~~l~l~~~~~~~~~i~~~~~~~lvl~~lv~t~i~~pl~~~l 426 (796)
....-+......+.|-+++-+...++++-++.+.+.+++.+++
T Consensus 129 SvTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 129 SVTTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred ccccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9888888888888888876665555555555555555555554
No 122
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=76.61 E-value=4.3 Score=43.43 Aligned_cols=110 Identities=21% Similarity=0.347 Sum_probs=69.2
Q ss_pred HHHHHHHHHhhhhccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhh
Q 003770 315 SGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIG 394 (796)
Q Consensus 315 ~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~~~l~l~~~~ 394 (796)
++++=|+-|.-+|..+|+..+.. +.+. .++-..+-++ +..+++.+...|++.+|+..+|.+=+.-|-.++.+.+..
T Consensus 68 ~~l~P~LIF~GIGAmtDFgplla-nP~~--~llGaaAQ~G-if~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~~L 143 (360)
T PF03977_consen 68 NGLFPPLIFMGIGAMTDFGPLLA-NPKT--LLLGAAAQFG-IFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSSKL 143 (360)
T ss_pred cchhhHHHHHHHhHHHhhHHHHh-CHHH--HHHHHHHHHh-HHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHHhh
Confidence 57888888999999999987753 2332 2222333333 345667777889999999999998777887777666543
Q ss_pred hc--cCCCChhHHHHHHHHHHHHHHhHHHHHHHHhhhhhh
Q 003770 395 KD--RKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARR 432 (796)
Q Consensus 395 ~~--~~~i~~~~~~~lvl~~lv~t~i~~pl~~~l~~~~~~ 432 (796)
-. .+.+.-..|+-| . +.-.+-||+.+.+-.+++|
T Consensus 144 Ap~LlgpIaVaAYsYM---a-LvPiiqPpimklLttkkeR 179 (360)
T PF03977_consen 144 APHLLGPIAVAAYSYM---A-LVPIIQPPIMKLLTTKKER 179 (360)
T ss_pred hHHHHHHHHHHHHHHH---H-HHhhhhhHHHHHhcCHHHH
Confidence 21 122222333333 2 2345678888877644443
No 123
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=76.40 E-value=22 Score=38.63 Aligned_cols=101 Identities=20% Similarity=0.188 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCh--hHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhcc
Q 003770 35 LQICLVILLTRGLAFILRPLRQPR--VIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLEL 112 (796)
Q Consensus 35 ~~i~lil~~~~~~~~ll~~l~~P~--iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle~ 112 (796)
.++.+++.++...+++++++|+|. ++|-++++.++.-.+.... -+ -+.+..++.+++=-.+|.++
T Consensus 155 ~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~------~~-------P~~l~~~aqv~iG~~iG~~f 221 (318)
T PF05145_consen 155 LWLALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSF------SL-------PPWLVNAAQVLIGASIGSRF 221 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCC------CC-------CHHHHHHHHHHHHHHHHccc
Confidence 345666677888999999999874 4666666666553211110 11 13455666677777999999
Q ss_pred CchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003770 113 DPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRET 149 (796)
Q Consensus 113 d~~~l~~~~~~~~~ia~~~~~i~~~~~~~~~~~l~~~ 149 (796)
+.+.+++..|. +..++...+.-+.++.+.++.+...
T Consensus 222 ~~~~l~~~~~~-~~~~l~~~~~~l~~~~~~a~~l~~~ 257 (318)
T PF05145_consen 222 TRETLRELRRL-LPPALLSTLLLLALCALFAWLLSRL 257 (318)
T ss_pred cHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998876544 4444444444555555555555443
No 124
>COG3329 Predicted permease [General function prediction only]
Probab=75.48 E-value=88 Score=33.27 Aligned_cols=120 Identities=13% Similarity=0.086 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHhhcCC---CCChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 003770 283 IHAMFGAFVVGVLVPK---EGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGT 359 (796)
Q Consensus 283 ~~~~lgafvaGl~l~~---~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~ 359 (796)
++|.+.=|+.|++++. +-.+.+.+.+.+. -.++-..-..-|+.+.-+.+.. .+..++.-+.+.++.-++..
T Consensus 16 ~sP~llFf~~Gmlia~~ksdl~iP~~i~~~ls----lyLL~aIG~kGGveir~snl~a--~v~~~~~~~aL~~li~~ia~ 89 (372)
T COG3329 16 LSPTLLFFILGMLIAAFKSDLEIPEAIYQALS----LYLLLAIGFKGGVEIRNSNLTA--MVLPVALGVALGFLIVFIAY 89 (372)
T ss_pred ccchHHHHHHHHHHHHHhccccCchHHHHHHH----HHHHHHHhcccceeeecCCcch--hHHHHHHHHHHHHHHHHHHH
Confidence 3788888888888873 1111122222111 1111111223344444444432 23333344455556667777
Q ss_pred HHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCChhHHHHH
Q 003770 360 FVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIM 408 (796)
Q Consensus 360 ~l~~~~~~~~~~e~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~~~l 408 (796)
++..++.|++..|+...+-..+.-..+.++.+...++.--+..+-|...
T Consensus 90 f~l~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~A 138 (372)
T COG3329 90 FLLRKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMPA 138 (372)
T ss_pred HHHHHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHHH
Confidence 8888888999999999988888888888888877776655566655544
No 125
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=74.87 E-value=37 Score=36.03 Aligned_cols=120 Identities=14% Similarity=0.246 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCC---hhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhh
Q 003770 263 YVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGP---FANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQ 339 (796)
Q Consensus 263 ~~~~~l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~~~~---~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~ 339 (796)
....-+.++|+.+.++..+.++|..|-.++|.+.....| -.+.+...+.++. .-+....+|+++.+.++..-.
T Consensus 10 tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelG----ViLLmFgvGLhfslkdLLavk 85 (408)
T COG4651 10 TIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELG----VILLMFGVGLHFSLKDLLAVK 85 (408)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhh----HHHHHHhcchheeHHHHhhHH
Confidence 345567778888999999999999999999999874222 2355666666664 234456789999887776544
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHH
Q 003770 340 SWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVEL 388 (796)
Q Consensus 340 ~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~~~l 388 (796)
.|.+-..+.-++. . ..-.+...+..|+++...+..|+.++.-.++-+
T Consensus 86 ~iAipgAl~qia~-a-t~lg~gL~~~lgws~~~glvfGlaLS~aSTVvl 132 (408)
T COG4651 86 AIAIPGALAQIAL-A-TLLGMGLSSLLGWSFGTGIVFGLALSVASTVVL 132 (408)
T ss_pred HHhcchHHHHHHH-H-HHHHhHHHHHcCCCcccceeeeehhhhHHHHHH
Confidence 4433222211111 1 111234466788999999999998877665543
No 126
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=74.16 E-value=13 Score=39.02 Aligned_cols=108 Identities=17% Similarity=0.049 Sum_probs=64.2
Q ss_pred EeccCCcChHHHHHHHHHHhc-CCCeEEEEEEeeecccccCCccccCCcCccccHHHHHHHHHhhcCCCCceEEEE---E
Q 003770 629 VLFFGGRDDREALACGARMAE-HPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEE---R 704 (796)
Q Consensus 629 ~~f~GG~ddreAL~~a~rma~-~~~v~ltvv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~~~e---~ 704 (796)
++..=.|.|+-|++.|.|+.+ ..+.++|++++-+... ++.+.+.... +-++....+ .
T Consensus 31 v~~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~a-----------------~~~lr~aLAm--GaDraili~d~~~ 91 (260)
T COG2086 31 VPLSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQA-----------------EEALREALAM--GADRAILITDRAF 91 (260)
T ss_pred CCcccChhhHHHHHHHHHhhccCCCceEEEEEecchhh-----------------HHHHHHHHhc--CCCeEEEEecccc
Confidence 344445889999999999999 6899999999975432 3334443333 223322222 1
Q ss_pred EecChHHHHHHHHhcc---CCCEEEEccCC---Cchhh-cccccCCCCCccccchhhh
Q 003770 705 LVRNTAETIAVIREVS---RCNLLLVGRMP---DGELA-LALSTRSDCLELGPVGSLL 755 (796)
Q Consensus 705 ~v~~~~~~~~~l~~~~---~~DL~iVGr~~---~~~~~-~gl~~w~e~~eLG~igd~l 755 (796)
.-.|+..+..++.+.. ++||++.|+.. .+.++ ..+.+|-..|-++-+=++-
T Consensus 92 ~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~i~ 149 (260)
T COG2086 92 AGADPLATAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSKIE 149 (260)
T ss_pred cCccHHHHHHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEEEEE
Confidence 1234455555565432 29999999997 22222 3444554556666555544
No 127
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=73.72 E-value=1.1e+02 Score=31.56 Aligned_cols=37 Identities=14% Similarity=0.022 Sum_probs=27.6
Q ss_pred ccCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003770 111 ELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLR 147 (796)
Q Consensus 111 e~d~~~l~~~~~~~~~ia~~~~~i~~~~~~~~~~~l~ 147 (796)
--+.+.+||+++..+.-.+.+.++.++.+..++.+++
T Consensus 83 Y~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lg 119 (232)
T PRK04288 83 YKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQ 119 (232)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3578888888888877777777777777776666664
No 128
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=71.83 E-value=8.7 Score=42.18 Aligned_cols=116 Identities=10% Similarity=0.056 Sum_probs=62.0
Q ss_pred HHHHHHHHHhhhhccccchhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHH-HHHHHHH
Q 003770 315 SGIFLPLYFVSSGLKTNIATIQGLQ-SWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGL-VELIVLN 392 (796)
Q Consensus 315 ~~~~~PlfF~~~G~~~dl~~l~~~~-~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~-~~l~l~~ 392 (796)
.+.|+-+||..+|+.-++..+..+. ...+............-......+.+.+++..-++..|-+--.-|+ -+.+...
T Consensus 68 ~~~fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~lgidpl~gllagsIsl~GGHGtaAA~~~ 147 (404)
T COG0786 68 QDVFMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLLGLDPLIGLLAGSISLVGGHGTAAAWGP 147 (404)
T ss_pred ccHHHHHHHHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHhcceeecCCCchHHHHHH
Confidence 4788889999999999998876432 1111122222222333344444566777766655555322112222 2344555
Q ss_pred hhhccCCCChhHHHHH--HHHHHHHHHhHHHHHHHHhhhh
Q 003770 393 IGKDRKVLNDQVFAIM--ILMAVVTTFMTTPLVMAVYKPA 430 (796)
Q Consensus 393 ~~~~~~~i~~~~~~~l--vl~~lv~t~i~~pl~~~l~~~~ 430 (796)
...+.|.-+.....+. .+-.+.-.++.+|+.+|+.++.
T Consensus 148 ~f~~~G~~~A~~va~A~ATfGlv~GgliGgpva~~li~k~ 187 (404)
T COG0786 148 TFEDLGAEGATEVAMASATFGLVAGGLIGGPVARWLIKKN 187 (404)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHhHhcCcHHHHHHHHhc
Confidence 6666665554333222 1222333455679999987544
No 129
>PRK09903 putative transporter YfdV; Provisional
Probab=71.23 E-value=1.1e+02 Score=33.07 Aligned_cols=118 Identities=10% Similarity=0.052 Sum_probs=66.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH-Hh
Q 003770 302 FANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGI-LM 380 (796)
Q Consensus 302 ~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl-~l 380 (796)
..+.+.+-++.+. +...|+-...+|+++....... .+. .....+...+.-++.++.....++++..+....=+ ..
T Consensus 192 lP~~i~~~l~~lg-~~~~PlaL~~iG~~L~~~~~~~--~~~-~~~~~~~Kli~~P~i~~~~~~~~~l~~~~~~v~vl~aa 267 (314)
T PRK09903 192 IPAAWDPTFNLIA-KANSGVAVFAAGLTLAAHKFEF--SAE-IAYNTFLKLILMPLALLLVGMACHLNSEHLQMMVLAGA 267 (314)
T ss_pred CCHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccccc--cHH-HHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHc
Confidence 3346666667665 7888999999999986544321 111 11222334444455555556666776443332211 12
Q ss_pred hhhHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHHhHHHHHHHHh
Q 003770 381 NTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVY 427 (796)
Q Consensus 381 ~~kG~~~l~l~~~~~~~~~i~~~~~~~lvl~~lv~t~i~~pl~~~l~ 427 (796)
.|-+....+++. +.| .+++..+..+..+.+.+.++-|+.-++.
T Consensus 268 ~P~a~~~~i~A~---~y~-~~~~~aa~~v~~sTlls~iTlpl~~~l~ 310 (314)
T PRK09903 268 LPPAFSGIIIAS---RFN-VYTRTGTASLAVSVLGFVVTAPLWIYVS 310 (314)
T ss_pred ccHHHHHHHHHH---HHc-ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433 233 2556666666666777888888887764
No 130
>COG2985 Predicted permease [General function prediction only]
Probab=69.97 E-value=21 Score=40.30 Aligned_cols=111 Identities=23% Similarity=0.302 Sum_probs=68.1
Q ss_pred hhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhH---HhcchhHHHHHHHHHHH
Q 003770 58 RVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSL---RQTGKKALGIAIAGISL 134 (796)
Q Consensus 58 ~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l---~~~~~~~~~ia~~~~~i 134 (796)
..-|.+++|++|| .+|.+.+++- ..|+ .....+.++|+.+||=..|++---+.. -..+-..+..+..-.++
T Consensus 397 ~aGGpLivaLiLG--~ig~iGpl~w-~mP~---~An~~lrelGl~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~v 470 (544)
T COG2985 397 NAGGPLIVALILG--FIGAIGPLTW-FMPP---GALLALRELGLALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVTLV 470 (544)
T ss_pred ccccHHHHHHHHH--HhcccCceEE-EcCh---hHHHHHHHHHHHHHHHhhccccccchHhhhcccchhhhhHHHHHHHH
Confidence 4467889999998 3555555322 2232 357889999999888777776543322 23444445555566667
Q ss_pred HHHHHHHHHHHHHhhhccCCchhHHHHHHHH-HHhhccHHHHHHHHHhcC
Q 003770 135 PFALGIGSSFLLRETISKGVDSTSFLVFMGV-ALSITAFPVLARILAELK 183 (796)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~el~ 183 (796)
|.++++.++.++.+. .+....|+ +-+.|++|...- ..|..
T Consensus 471 p~i~~~llg~~v~km--------n~~~l~G~laGs~T~ppaLa~-and~~ 511 (544)
T COG2985 471 PVIIVFLLGRYVLKM--------NWLLLCGALAGSMTDPPALAF-ANDAA 511 (544)
T ss_pred HHHHHHHHHHHHHhc--------cHHHHhhHHhcCCCChHHHHH-Hhhcc
Confidence 777777777666432 23444454 448899886654 34443
No 131
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=69.93 E-value=11 Score=36.41 Aligned_cols=123 Identities=16% Similarity=0.074 Sum_probs=65.0
Q ss_pred cChHHHHHHHHHHhcCCCeEEEEEEeeecccccCCccccCCcCccccHHHHHHHHHhhcCCCCceEEEEEEe-c--ChHH
Q 003770 635 RDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLV-R--NTAE 711 (796)
Q Consensus 635 ~ddreAL~~a~rma~~~~v~ltvv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~~~e~~v-~--~~~~ 711 (796)
+.|+|+|+.|+++++..+.+++++-+-+.++ .++.+.+...++ +-+++-..+--- . +.+.
T Consensus 15 ~~~~e~l~~A~~La~~~g~~v~av~~G~~~~----------------~~~~l~~~l~~~-G~d~v~~~~~~~~~~~~~~~ 77 (164)
T PF01012_consen 15 PVSLEALEAARRLAEALGGEVTAVVLGPAEE----------------AAEALRKALAKY-GADKVYHIDDPALAEYDPEA 77 (164)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEETCCC----------------HHHHHHHHHHST-TESEEEEEE-GGGTTC-HHH
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEecchh----------------hHHHHhhhhhhc-CCcEEEEecCccccccCHHH
Confidence 7799999999999999999999998752111 133333333322 223343332111 1 2334
Q ss_pred HHHHHHhcc---CCCEEEEccCC-C---chhhcccccCCCCCccccchhhhccCCCCc-eeEEEEeeecccccccccccc
Q 003770 712 TIAVIREVS---RCNLLLVGRMP-D---GELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQQYSDRVFMNLASEL 783 (796)
Q Consensus 712 ~~~~l~~~~---~~DL~iVGr~~-~---~~~~~gl~~w~e~~eLG~igd~las~d~~~-~SvLvvqq~~~~~~~~~~~~~ 783 (796)
...++.++- ++|++++|.+. . .+..+..-+ .+.+.|... +.. ..-+.+.++.+.+......++
T Consensus 78 ~a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~------~~~v~~v~~---l~~~~~~~~~~r~~~gG~~~~~~~~ 148 (164)
T PF01012_consen 78 YADALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLG------APLVTDVTD---LEVEDGGLVVTRPVYGGKVVATVRL 148 (164)
T ss_dssp HHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-------EEEEEEEE---EEEETTEEEEEEEETTTTEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhC------CCccceEEE---EEECCCeEEEEEECCCCEEEEEEEC
Confidence 444554432 29999999986 1 333333333 355555552 222 233555666655554443333
No 132
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=68.97 E-value=24 Score=34.85 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=32.0
Q ss_pred EEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 003770 626 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFL 661 (796)
Q Consensus 626 ~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~ 661 (796)
||++.+.||.|.--++.++.+.++..+.++.++++.
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd 36 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVD 36 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 589999999999999999999887777788888885
No 133
>PRK09903 putative transporter YfdV; Provisional
Probab=68.12 E-value=93 Score=33.66 Aligned_cols=114 Identities=18% Similarity=0.162 Sum_probs=63.2
Q ss_pred CCChhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhcchhHHHHHHHH-HH
Q 003770 55 RQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAG-IS 133 (796)
Q Consensus 55 ~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia~~~-~~ 133 (796)
+-|.+++.++ |+++.- +|.. +|..-.+.++.+++...-+-||..|..+....++.. ++.+...+.- ++
T Consensus 172 ~nP~iia~~~-gl~~~l--~~i~-------lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~-~~~~~~~~~Kli~ 240 (314)
T PRK09903 172 KEPVVWAPVL-ATILVL--VGVK-------IPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFS-AEIAYNTFLKLIL 240 (314)
T ss_pred hchHHHHHHH-HHHHHH--cCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHHHHH
Confidence 4577776654 455442 2221 244456789999999999999999999877665443 3444333333 33
Q ss_pred HHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCCh
Q 003770 134 LPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTAD 188 (796)
Q Consensus 134 i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~ 188 (796)
.|++. +...+.+. . + ....-...+++.+..++.+.++.+.--.+.+
T Consensus 241 ~P~i~-~~~~~~~~--l--~----~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~ 286 (314)
T PRK09903 241 MPLAL-LLVGMACH--L--N----SEHLQMMVLAGALPPAFSGIIIASRFNVYTR 286 (314)
T ss_pred HHHHH-HHHHHHcC--C--C----cHHHHHHHHHHcccHHHHHHHHHHHHcccHH
Confidence 46543 32232221 1 1 1233445555666666666666554323443
No 134
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=66.76 E-value=78 Score=34.64 Aligned_cols=99 Identities=20% Similarity=0.192 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHhcccCCChh--HHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCc
Q 003770 37 ICLVILLTRGLAFILRPLRQPRV--IAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDP 114 (796)
Q Consensus 37 i~lil~~~~~~~~ll~~l~~P~i--v~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle~d~ 114 (796)
+.+.+.++.+.+.+.+++|+|.. .+-++.|.++.-.. +. ..+.-..+..++..++.-.+|.++|.
T Consensus 190 ~~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~-~~------------~~~lP~wl~~va~~~iG~~IG~~f~~ 256 (352)
T COG3180 190 LLLLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGG-GI------------TIQLPAWLLAVAQALIGALIGSRFDR 256 (352)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhccc-ce------------eeeCCHHHHHHHHHHHHHHHcccccH
Confidence 66667777788889999998863 33333333332111 00 11222345577788888999999999
Q ss_pred hhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003770 115 KSLRQTGKKALGIAIAGISLPFALGIGSSFLLRET 149 (796)
Q Consensus 115 ~~l~~~~~~~~~ia~~~~~i~~~~~~~~~~~l~~~ 149 (796)
..++...|....+. ...+.-+.+....++++...
T Consensus 257 ~~l~~~~r~~~~~~-v~ii~l~~~~~~~a~ll~~~ 290 (352)
T COG3180 257 SILREAKRLLPAIL-VSIIALMAIAAGMAGLLSWL 290 (352)
T ss_pred HHHHHhHhhcchHH-HHHHHHHHHHHHHHHHHHHh
Confidence 99887666544333 33333333444455555443
No 135
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=66.65 E-value=1.9e+02 Score=31.21 Aligned_cols=136 Identities=14% Similarity=0.134 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHhhcCC-CCChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 003770 283 IHAMFGAFVVGVLVPK-EGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFV 361 (796)
Q Consensus 283 ~~~~lgafvaGl~l~~-~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l 361 (796)
.+|.+=|.++|+++.- +-+....+.+-++.+. +...|+-...+|+.++...... .+.......++.++.-.+.++.
T Consensus 181 ~nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~lg-~~~~plaLl~lG~~l~~~~~~~--~~~~~~~~~~~klil~P~i~~~ 257 (321)
T TIGR00946 181 KFPPLWAPLLSVILSLVGFKMPGLILKSISILS-GATTPMALFSLGLALSPRKIKL--GVRDAILALIVRFLVQPAVMAG 257 (321)
T ss_pred hCCChHHHHHHHHHHHHhhcCcHHHHHHHHHHH-HHHHHHHHHHHHHhhChhhhcc--ChHHHHHHHHHHHHHHHHHHHH
Confidence 3566666677776653 2223456666677765 7889999999999988766542 2333344445556566666677
Q ss_pred HHHhcCCChHHHHH--HHHHhhhhHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHHhHHHHHHHH
Q 003770 362 VSLSFKVPLREALA--LGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAV 426 (796)
Q Consensus 362 ~~~~~~~~~~e~~~--lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~~~lvl~~lv~t~i~~pl~~~l 426 (796)
....++.+...... +-. ..|-+....+++. +.| .+++..+..+....+.++++-|+..++
T Consensus 258 ~~~~~~l~~~~~~~~vl~a-a~P~a~~~~i~A~---~y~-~~~~~aa~~v~~sT~ls~~tlp~~~~l 319 (321)
T TIGR00946 258 ISKLIGLRGLELSVAILQA-ALPGGAVAAVLAT---EYE-VDVELASTAVTLSTVLSLISLPLFIIL 319 (321)
T ss_pred HHHHhCCChHHHHHHHHHH-cCChhhHHHHHHH---HhC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776543322 222 2344443333332 333 255666666666666677777776654
No 136
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=66.06 E-value=2.4e+02 Score=32.03 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHH
Q 003770 172 FPVLARILAELKLLTADVGRMAMSAAAVNDVAAWIL 207 (796)
Q Consensus 172 ~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~~~l 207 (796)
.|++....+.+|+-+.+.--.+++++.+.|..+.++
T Consensus 117 TPivla~~~~~~~~~~~~lp~l~a~~~iAntASl~L 152 (423)
T PF02040_consen 117 TPIVLALARRLGLNPKPPLPFLFACAFIANTASLLL 152 (423)
T ss_pred HHHHHHHHHHcCCCcccchHHHHHHHHHhhhhhccc
Confidence 477888888888655555578889999999988765
No 137
>PRK10711 hypothetical protein; Provisional
Probab=65.28 E-value=1.7e+02 Score=30.13 Aligned_cols=83 Identities=12% Similarity=0.194 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHHhH
Q 003770 340 SWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMT 419 (796)
Q Consensus 340 ~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~~~lvl~~lv~t~i~ 419 (796)
.|.-+..-+.++.+.-++++++.++.+|.+.. + -..+.+|..-.-+...+..+.|-+.+-+-..++++-++-..+.
T Consensus 87 ~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~--~--~~Sl~pkSVTtPIAm~is~~iGG~~sLta~~ViitGi~Ga~~g 162 (231)
T PRK10711 87 RWKSIISICFIGSVVAMVTGTAVALWMGATPE--I--AASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFG 162 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--H--HHHHhhhhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 44444555566666777888888999998644 2 3346789988877778887777665444444444444444444
Q ss_pred HHHHHHH
Q 003770 420 TPLVMAV 426 (796)
Q Consensus 420 ~pl~~~l 426 (796)
+++.+++
T Consensus 163 ~~llk~~ 169 (231)
T PRK10711 163 HTLLNAM 169 (231)
T ss_pred HHHHHHc
Confidence 5555543
No 138
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=64.93 E-value=25 Score=33.82 Aligned_cols=86 Identities=14% Similarity=0.154 Sum_probs=50.6
Q ss_pred HHHHHHHHhhcCCC---CChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhh--hh-HHHHHHHHHHHHHHHHHHH
Q 003770 286 MFGAFVVGVLVPKE---GPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGL--QS-WGLLALVILTACLGKIVGT 359 (796)
Q Consensus 286 ~lgafvaGl~l~~~---~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~--~~-~~~~~~i~~~~~~~K~~~~ 359 (796)
.-|+++.|+++.+- +|....+-.....+..++.+-+|...+|++.-...+... .. +.......++.++.-.+..
T Consensus 24 ~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~ 103 (154)
T TIGR01625 24 AGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVA 103 (154)
T ss_pred cHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 45778888887752 233334444455566678888999999999764433221 12 2222222333444445566
Q ss_pred HHHHHhcCCChH
Q 003770 360 FVVSLSFKVPLR 371 (796)
Q Consensus 360 ~l~~~~~~~~~~ 371 (796)
++..+++|+++.
T Consensus 104 ~~~~~~~~~~~~ 115 (154)
T TIGR01625 104 VALIKLLRINYA 115 (154)
T ss_pred HHHHHHhCCCHH
Confidence 666678899865
No 139
>COG0679 Predicted permeases [General function prediction only]
Probab=64.56 E-value=1.5e+02 Score=32.00 Aligned_cols=105 Identities=20% Similarity=0.309 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003770 285 AMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSL 364 (796)
Q Consensus 285 ~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~ 364 (796)
+++.-...|..+.+.....++-.+-+..++..+.+|..+...=.+.+.+... .+...+...+..++.=+...++..+
T Consensus 11 pi~lii~lGy~~~r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (311)
T COG0679 11 PIFLIILLGYLLKRFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGLA---DLGLIVASLVATLLAFFLLALIGRF 87 (311)
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchhh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777777766677777778899999999999866655666654431 2333344444444444555556666
Q ss_pred hcCCChHHHH--HHHHHhhhhHHHHHHHHH
Q 003770 365 SFKVPLREAL--ALGILMNTKGLVELIVLN 392 (796)
Q Consensus 365 ~~~~~~~e~~--~lgl~l~~kG~~~l~l~~ 392 (796)
..+.+.+++. .++...+.-|-+.+-++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~ 117 (311)
T COG0679 88 LFKLDKRETVIFALASAFPNIGFLGLPVAL 117 (311)
T ss_pred HhccchhhHHHHHHHHHhcccchhhHHHHH
Confidence 6777766553 344445555666544443
No 140
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=62.63 E-value=28 Score=41.88 Aligned_cols=123 Identities=14% Similarity=0.125 Sum_probs=71.9
Q ss_pred cceEEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEeeecccccCCccccCCcCccccHHHHHHHHHhhcCCCCceEEE
Q 003770 623 VSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYE 702 (796)
Q Consensus 623 ~~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~~~ 702 (796)
...||+|-..|+|.....++.|.|+|++-+.+.|++++..++... ..+.+++.-++.+ ++.++.. ..+
T Consensus 247 ~~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~------~~~~~~~~l~~~~-~Lae~lG--ae~--- 314 (890)
T COG2205 247 ARERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHR------LSEKEARRLHENL-RLAEELG--AEI--- 314 (890)
T ss_pred ccceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEecccccc------ccHHHHHHHHHHH-HHHHHhC--CeE---
Confidence 447999999999999999999999999999999999998655432 1111111111222 1222221 111
Q ss_pred EEEecChHHHHHHH-H--hccCCCEEEEccCCCchhhcccccCCCCCccccchhhhccCCCCceeEEEE
Q 003770 703 ERLVRNTAETIAVI-R--EVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLII 768 (796)
Q Consensus 703 e~~v~~~~~~~~~l-~--~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~SvLvv 768 (796)
+++.+ .++..++ + +..+..-+|+|+++.+ .|.+.-. |-+.|-|+...-. -.|-+|
T Consensus 315 -~~l~~-~dv~~~i~~ya~~~~~TkiViG~~~~~-------rw~~~~~-~~l~~~L~~~~~~-idv~ii 372 (890)
T COG2205 315 -VTLYG-GDVAKAIARYAREHNATKIVIGRSRRS-------RWRRLFK-GSLADRLAREAPG-IDVHIV 372 (890)
T ss_pred -EEEeC-CcHHHHHHHHHHHcCCeeEEeCCCcch-------HHHHHhc-ccHHHHHHhcCCC-ceEEEe
Confidence 12222 2233333 2 3333788999999722 3533222 7788888764332 344444
No 141
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=62.58 E-value=42 Score=36.22 Aligned_cols=72 Identities=29% Similarity=0.526 Sum_probs=37.8
Q ss_pred HHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhcc--CchhHHhcchhHHHHHHHHHHHHHH-
Q 003770 61 AEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLEL--DPKSLRQTGKKALGIAIAGISLPFA- 137 (796)
Q Consensus 61 ~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle~--d~~~l~~~~~~~~~ia~~~~~i~~~- 137 (796)
|-++.|.+-||.+...+.+|+..+| .=-+.+||...|++- .++++|+.+ +.+...+++.|++
T Consensus 185 GgliIG~~~g~~g~~~i~pf~~~lF------------~G~L~lFLLeMGl~A~~rL~~l~~~g---~~li~Fgi~~Pli~ 249 (327)
T PF05982_consen 185 GGLIIGFLAGPEGVESIKPFFVDLF------------KGVLCLFLLEMGLVAARRLRDLRKVG---WFLIAFGILMPLIN 249 (327)
T ss_pred HHHHHhheeCccchhhccchhhccH------------HHHHHHHHHHhhHHHHHhhHHHHhhh---HHHHHHHHHHHHHH
Confidence 3344455555655544444433332 223567788888864 444555544 4455556666755
Q ss_pred --HHHHHHHHHH
Q 003770 138 --LGIGSSFLLR 147 (796)
Q Consensus 138 --~~~~~~~~l~ 147 (796)
+|..++++++
T Consensus 250 a~ig~~lg~~~g 261 (327)
T PF05982_consen 250 ALIGIGLGWLLG 261 (327)
T ss_pred HHHHHHHHHHhC
Confidence 4444444443
No 142
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=61.31 E-value=12 Score=42.63 Aligned_cols=83 Identities=22% Similarity=0.395 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCccEEEec---CccccccCCccccccchhHHHHHHHhhcCCCceEEEecCCC--CC--CcccccCCcce
Q 003770 553 HEDICTTAESKRAAIIILP---FHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGL--GG--TTQVSASNVSY 625 (796)
Q Consensus 553 ~~dI~~~A~e~~a~lIilp---~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgIlvdrg~--~~--~~~~~~~~~~~ 625 (796)
.++||.+|+++++|+|++| ||....+... -...++.+-+.=+..-||..=++-|.+. +. +.++--.+...
T Consensus 41 FeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~---L~~~i~lLRryClgdkP~~le~lSD~s~~f~~~~f~~VNY~DpNl 117 (646)
T KOG2310|consen 41 FEEILEIAQENDVDMILLGGDLFHENKPSRKT---LHRCLELLRRYCLGDKPVQLEILSDQSVNFGNSVFGNVNYEDPNL 117 (646)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCCccHHH---HHHHHHHHHHHccCCCceeeEEecccceeccccccceecccCCCc
Confidence 3799999999999999999 6765433221 2334566666777889999999988863 21 11111123345
Q ss_pred EEEEeccC--CcChH
Q 003770 626 TITVLFFG--GRDDR 638 (796)
Q Consensus 626 ~i~~~f~G--G~ddr 638 (796)
+|.+|+++ |.+|.
T Consensus 118 NIsIPVFsIHGNHDD 132 (646)
T KOG2310|consen 118 NISIPVFSIHGNHDD 132 (646)
T ss_pred ceeeeeEEeecCCCC
Confidence 77777763 44443
No 143
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=59.84 E-value=28 Score=37.45 Aligned_cols=39 Identities=13% Similarity=0.115 Sum_probs=31.5
Q ss_pred eEEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEeeec
Q 003770 625 YTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLA 663 (796)
Q Consensus 625 ~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~~ 663 (796)
.++++.|.||+|+--.|.+|.+.-...+.++.++++-+.
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG 66 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTG 66 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCC
Confidence 488999999999999999998876544667788877543
No 144
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=59.83 E-value=16 Score=36.10 Aligned_cols=57 Identities=19% Similarity=0.242 Sum_probs=42.4
Q ss_pred EEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEeeecccccCCccccCCcCccccHHHHHHHHHhhc
Q 003770 626 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKT 693 (796)
Q Consensus 626 ~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 693 (796)
+|++.+.||+|.-..|.+..++.++.+.+++++++-..-. .+...+.+.+.++..++
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~-----------~~s~~~~~~v~~~~~~~ 57 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLR-----------EESDEEAEFVEEICEQL 57 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STS-----------CCHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCC-----------cccchhHHHHHHHHHhc
Confidence 6899999999999999999999999999999999974322 12233457777777765
No 145
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=58.52 E-value=24 Score=37.77 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=30.8
Q ss_pred EEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEeeec
Q 003770 626 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLA 663 (796)
Q Consensus 626 ~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~~ 663 (796)
+.++.|.||+|+--.|.++.+.-...+.++.++++-+.
T Consensus 21 ~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG 58 (294)
T TIGR02039 21 RPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTG 58 (294)
T ss_pred CcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecC
Confidence 55788999999999999999987544677888888543
No 146
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=57.62 E-value=21 Score=38.33 Aligned_cols=39 Identities=26% Similarity=0.234 Sum_probs=33.0
Q ss_pred cceEEEEeccCCcChHHHHHHHHHHhcCCCe-EEEEEEee
Q 003770 623 VSYTITVLFFGGRDDREALACGARMAEHPGI-SFIVIRFL 661 (796)
Q Consensus 623 ~~~~i~~~f~GG~ddreAL~~a~rma~~~~v-~ltvv~~~ 661 (796)
...+|+|-|.||+|.-..|.++.+.|+..+- ++.|+++-
T Consensus 26 ~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD 65 (407)
T COG3969 26 TFPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFID 65 (407)
T ss_pred cCCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEc
Confidence 4569999999999999999999999977665 78888764
No 147
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=57.61 E-value=2.3e+02 Score=29.11 Aligned_cols=83 Identities=11% Similarity=0.153 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHHhH
Q 003770 340 SWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMT 419 (796)
Q Consensus 340 ~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~~~lvl~~lv~t~i~ 419 (796)
.|..+...+.++.+.-+..+++.++.+|.+.. ... .+.+|..-.-+...+..+.|-..+-+...++++-++-..+.
T Consensus 86 ~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~--i~~--Sl~pkSvTtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g 161 (226)
T TIGR00659 86 YWKEIILNVAVGSVIAIISGTLLALLLGLGPE--IIA--SLLPKSVTTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFG 161 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HHH--HhhhHHhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 34444444455556667778888899998733 333 46789988877777777777654444444444444444444
Q ss_pred HHHHHHH
Q 003770 420 TPLVMAV 426 (796)
Q Consensus 420 ~pl~~~l 426 (796)
+++.+++
T Consensus 162 ~~ll~~~ 168 (226)
T TIGR00659 162 PMVLRYF 168 (226)
T ss_pred HHHHHHc
Confidence 4555443
No 148
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=56.62 E-value=1.5e+02 Score=30.27 Aligned_cols=36 Identities=14% Similarity=0.024 Sum_probs=25.7
Q ss_pred cCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003770 112 LDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLR 147 (796)
Q Consensus 112 ~d~~~l~~~~~~~~~ia~~~~~i~~~~~~~~~~~l~ 147 (796)
=+.+.+||+++..+.-...+.++.++.+..++++++
T Consensus 68 ~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lg 103 (215)
T PF04172_consen 68 RQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLG 103 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 467788888888777777777777666666666654
No 149
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=56.36 E-value=22 Score=38.28 Aligned_cols=39 Identities=13% Similarity=0.099 Sum_probs=31.9
Q ss_pred eEEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEeeec
Q 003770 625 YTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLA 663 (796)
Q Consensus 625 ~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~~ 663 (796)
.++++.|.||+|+--.|.+|.+.....+.++.++++-+.
T Consensus 38 ~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG 76 (312)
T PRK12563 38 SKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTT 76 (312)
T ss_pred CCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCC
Confidence 467899999999999999999987555567788887543
No 150
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=54.39 E-value=1.1e+02 Score=33.54 Aligned_cols=95 Identities=15% Similarity=0.060 Sum_probs=53.9
Q ss_pred HHHHhccc-CCChhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHH-HHHHHHHHHHHHHHhhc-cCchhHHhcc-h
Q 003770 47 LAFILRPL-RQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLD-TLANLGLIFFMFLVGLE-LDPKSLRQTG-K 122 (796)
Q Consensus 47 ~~~ll~~l-~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~-~l~~lgl~~~lF~~Gle-~d~~~l~~~~-~ 122 (796)
++.+++.+ ++|..+-.++.|+++-- +|.+++-. .+...... ++..--...+|+-.|+. +|++++.+.. .
T Consensus 194 ~g~l~~~~~~Ih~~v~mII~~vi~k~--~gllp~~i-----~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~ 266 (347)
T TIGR00783 194 AGGLLKSFPGIPAYAFMILIAAALKA--FGLVPKEI-----EEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSW 266 (347)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHH--hCCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhch
Confidence 34444444 68999999999999873 34443100 01112222 33333344455557886 8999998877 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003770 123 KALGIAIAGISLPFALGIGSSFLLRE 148 (796)
Q Consensus 123 ~~~~ia~~~~~i~~~~~~~~~~~l~~ 148 (796)
+.+.+.+.+++--.+.++.++.+++.
T Consensus 267 ~~vviiv~~Vlg~ii~s~lvGKllG~ 292 (347)
T TIGR00783 267 QFVVICLSVVVAMILGGAFLGKLMGM 292 (347)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHhCC
Confidence 44444444444444555566666643
No 151
>PRK10711 hypothetical protein; Provisional
Probab=53.79 E-value=2.7e+02 Score=28.73 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=25.6
Q ss_pred cCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003770 112 LDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLR 147 (796)
Q Consensus 112 ~d~~~l~~~~~~~~~ia~~~~~i~~~~~~~~~~~l~ 147 (796)
-+.+.+||+++..+.--..|.++.++.+..++.+++
T Consensus 79 ~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg 114 (231)
T PRK10711 79 EQLHQIRARWKSIISICFIGSVVAMVTGTAVALWMG 114 (231)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 577888888888776666677766666666666654
No 152
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=53.43 E-value=1.7e+02 Score=31.66 Aligned_cols=91 Identities=23% Similarity=0.286 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 003770 285 AMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGL-QSWGLLALVILTACLGKIVGTFVVS 363 (796)
Q Consensus 285 ~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~-~~~~~~~~i~~~~~~~K~~~~~l~~ 363 (796)
.++.+.++|...|.-+..+..+. .|... .+...+.|...|++++...+... ..|..........++.=.+..+...
T Consensus 6 ~l~~ai~la~~~P~~g~~~~~~~--~~~~~-~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~ 82 (313)
T PF13593_consen 6 GLLLAILLAYLFPAPGAAGGVIK--PEYVI-KYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLS 82 (313)
T ss_pred HHHHHHHHHHHcCcccccCCccc--hhhhH-HHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888886433332332 12222 33356677889999998877643 3555544444444444455555555
Q ss_pred HhcCCChHHHHHHHH
Q 003770 364 LSFKVPLREALALGI 378 (796)
Q Consensus 364 ~~~~~~~~e~~~lgl 378 (796)
...+-...+.+..|+
T Consensus 83 ~l~~~~~~~~l~~Gl 97 (313)
T PF13593_consen 83 RLFPAFLPPELALGL 97 (313)
T ss_pred HHhhccCCHHHHHHH
Confidence 444322223355555
No 153
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=53.06 E-value=62 Score=31.69 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=31.6
Q ss_pred EEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEeee
Q 003770 626 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLL 662 (796)
Q Consensus 626 ~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~ 662 (796)
+|++.+.||.|+--++.++.+...+.+.++.++++..
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~ 37 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDH 37 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 5889999999999999999998876567788888753
No 154
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=52.99 E-value=2.8e+02 Score=28.57 Aligned_cols=37 Identities=14% Similarity=0.072 Sum_probs=26.6
Q ss_pred ccCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003770 111 ELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLR 147 (796)
Q Consensus 111 e~d~~~l~~~~~~~~~ia~~~~~i~~~~~~~~~~~l~ 147 (796)
--+.+.+||+++..+.-...+.++.+..+..++.+++
T Consensus 77 Y~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg 113 (226)
T TIGR00659 77 YKQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLG 113 (226)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3578888888888777666677766666666666664
No 155
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=48.59 E-value=54 Score=33.58 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=49.5
Q ss_pred EEEEeEEecCCC-ChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEecC
Q 003770 539 SVRPMTAISSMS-DMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDR 610 (796)
Q Consensus 539 ~v~~~~~vs~~~-~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgIlvdr 610 (796)
....+|.++|-+ ...++|.+.+.+.+.|.|++|- +.+-+......+.+++-++...||-++...
T Consensus 15 ~~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIGG--------S~gvt~~~~~~~v~~ik~~~~lPvilfP~~ 79 (240)
T COG1646 15 GKRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIGG--------SDGVTEENVDNVVEAIKERTDLPVILFPGS 79 (240)
T ss_pred cceEEEEeCcccccccHHHHHHHHHcCCCEEEECC--------cccccHHHHHHHHHHHHhhcCCCEEEecCC
Confidence 346788999999 9999999999999999999994 222233346778888887899998665533
No 156
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=48.42 E-value=19 Score=30.39 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=27.4
Q ss_pred EEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEe
Q 003770 627 ITVLFFGGRDDREALACGARMAEHPGISFIVIRF 660 (796)
Q Consensus 627 i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~ 660 (796)
|++++.||+|+..++.++.+.+ ..+.+++.+++
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~ 33 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVV 33 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEe
Confidence 5789999999999999999987 44667777776
No 157
>COG0679 Predicted permeases [General function prediction only]
Probab=48.41 E-value=3.8e+02 Score=28.89 Aligned_cols=140 Identities=15% Similarity=0.194 Sum_probs=81.7
Q ss_pred chhHHHHHHHHHhhcCC-CCChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 003770 282 GIHAMFGAFVVGVLVPK-EGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTF 360 (796)
Q Consensus 282 g~~~~lgafvaGl~l~~-~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~ 360 (796)
=.+|.+=|+++|+++.. +-+..+.+.+-++.+. +.-.|+-.+..|+.++...... ..+.........-.+..++.++
T Consensus 166 ~~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~-~a~~pl~li~lG~~L~~~~~~~-~~~~~~~~~~~~kll~~Pl~~~ 243 (311)
T COG0679 166 LTNPLIIALILGLLLNLLGISLPAPLDTAVDLLA-SAASPLALIALGLSLAFLKLKG-SKPPIILIALSLKLLLAPLVAL 243 (311)
T ss_pred HhCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH-HhhhhHHHHHHhhhcchhhhcc-ccchhHHHHHHHHHHHHHHHHH
Confidence 34566666677776653 2333445666666665 7889999999999999844433 2333333333335667778888
Q ss_pred HHHHhcCCChHHHHHHHHH-hhhhHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHHhHHHHHHHHh
Q 003770 361 VVSLSFKVPLREALALGIL-MNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVY 427 (796)
Q Consensus 361 l~~~~~~~~~~e~~~lgl~-l~~kG~~~l~l~~~~~~~~~i~~~~~~~lvl~~lv~t~i~~pl~~~l~ 427 (796)
+..+.++++-.+...+=+. ..|.+....+++.. .+. +++.....+..+.+.+.++-|...+..
T Consensus 244 ~~~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~---~~~-~~~laa~~i~ist~ls~~t~p~~~~~l 307 (311)
T COG0679 244 LVAKLLGLSGLALQVLVLLSAMPTAVNAYVLARQ---YGG-DPRLAASTILLSTLLSLLTLPLLILLL 307 (311)
T ss_pred HHHHHcCCChHHHHHHHHHhhCcHHhHHHHHHHH---hCC-ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999876655332221 34555544444433 333 344444444445555666666555443
No 158
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=48.07 E-value=1.1e+02 Score=29.64 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=30.9
Q ss_pred EEEEeccCCcChHHHHHHHHHHhcCC--CeEEEEEEeee
Q 003770 626 TITVLFFGGRDDREALACGARMAEHP--GISFIVIRFLL 662 (796)
Q Consensus 626 ~i~~~f~GG~ddreAL~~a~rma~~~--~v~ltvv~~~~ 662 (796)
||++.+.||.|.--++.++.+..++. +.+++.+++-.
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~ 39 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDE 39 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEEC
Confidence 68999999999999999998887654 77888888754
No 159
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=47.69 E-value=3.9e+02 Score=28.73 Aligned_cols=82 Identities=20% Similarity=0.258 Sum_probs=54.5
Q ss_pred HHHHHHHHhhhhccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhh
Q 003770 316 GIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGK 395 (796)
Q Consensus 316 ~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~~~l~l~~~~~ 395 (796)
.+++=.|++.++.-.|+..+...+.|. +..+...+...+..+..++.++.+..+-....+ -|..|-.+.-....++
T Consensus 276 tv~lY~~v~vias~Ad~~~i~taP~~i---~~gf~il~~h~~v~f~~~KlF~~dL~~i~~Asl-AniGG~~sAp~~A~A~ 351 (384)
T COG5505 276 TVLLYLFVVVIASPADLRLIVTAPLII---LFGFIILISHLAVSFAAGKLFRVDLEEILLASL-ANIGGPTSAPAMAIAK 351 (384)
T ss_pred HHHHHHHHHHhccchhHHHHHhhhHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hccCCccchhHHHhhc
Confidence 456667899999999998887544443 233334445566667778888887766555444 6777777777777777
Q ss_pred ccCCCC
Q 003770 396 DRKVLN 401 (796)
Q Consensus 396 ~~~~i~ 401 (796)
+...+.
T Consensus 352 nr~lv~ 357 (384)
T COG5505 352 NRELVA 357 (384)
T ss_pred Cchhcc
Confidence 655444
No 160
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=44.10 E-value=3.4e+02 Score=27.03 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 003770 344 LALVILTACLGKIVGTFVVSLSFK 367 (796)
Q Consensus 344 ~~~i~~~~~~~K~~~~~l~~~~~~ 367 (796)
..+.++..+++-++|+++..+.+|
T Consensus 161 ~~~~~~~t~v~~~iG~~iG~kllk 184 (189)
T TIGR02185 161 AVIMIVLTAVAGIAGVLIGKKLLK 184 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666667888888777654
No 161
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=43.83 E-value=84 Score=33.73 Aligned_cols=73 Identities=16% Similarity=0.216 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhcchhHHHHHHHHHHHHHHHH
Q 003770 60 IAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALG 139 (796)
Q Consensus 60 v~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~i~~~~~ 139 (796)
+-.++.|+++|+. .+++.+.+-| -..+-..|+-|..|-.+|+..+.+.+-.-+.+++..++++....
T Consensus 175 llP~iiG~iLGNL----D~~~r~fl~~---------~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~ 241 (314)
T PF03812_consen 175 LLPIIIGMILGNL----DPDFRKFLAP---------GVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIPL 241 (314)
T ss_pred HHHHHHHHHHhcC----CHHHHHHHhc---------CCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHH
Confidence 3456789999952 2222222222 22233567889999999999999999888888887776665555
Q ss_pred HHHHHH
Q 003770 140 IGSSFL 145 (796)
Q Consensus 140 ~~~~~~ 145 (796)
+....+
T Consensus 242 ~~~dr~ 247 (314)
T PF03812_consen 242 YLADRL 247 (314)
T ss_pred HHHHHH
Confidence 444443
No 162
>PRK09535 btuC corrinoid ABC transporter permease; Reviewed
Probab=43.38 E-value=5e+02 Score=28.82 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=19.6
Q ss_pred HhcccCCChhHHHHHHHHhcCccc
Q 003770 50 ILRPLRQPRVIAEITGGILLGPSA 73 (796)
Q Consensus 50 ll~~l~~P~iv~~ilaGiilGP~~ 73 (796)
+...+|+|+++.-+++|..++-++
T Consensus 90 iv~~iRlPRil~a~lvGa~LalsG 113 (366)
T PRK09535 90 IVLQIRLPRILLAATVGFALAAAG 113 (366)
T ss_pred hHHHhHHHHHHHHHHHHHHHHHHH
Confidence 445789999999999999998543
No 163
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=43.05 E-value=2.6e+02 Score=34.39 Aligned_cols=66 Identities=14% Similarity=0.168 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhhccCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhcc
Q 003770 98 NLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITA 171 (796)
Q Consensus 98 ~lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts 171 (796)
++-+-++....|++.|+..+.+ +.............-++.+.+.+.+... ++..++.+|.+++.-.
T Consensus 313 ~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl~~k~-------p~~~~l~l~~lm~~kg 378 (769)
T KOG1650|consen 313 GLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLSTLGTSLYCKL-------PLRDSLALGLLMSTKG 378 (769)
T ss_pred HHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcC-------chhHHHHHHHHHHhhh
Confidence 4556667788899999999988 3222222222333334444444443321 1256777777776543
No 164
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=42.28 E-value=1.4e+02 Score=34.10 Aligned_cols=59 Identities=24% Similarity=0.202 Sum_probs=43.0
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHh-cCCCeEEEEEEeeecccccCCccccCCcCccccHHHHHHHHHhhc
Q 003770 624 SYTITVLFFGGRDDREALACGARMA-EHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKT 693 (796)
Q Consensus 624 ~~~i~~~f~GG~ddreAL~~a~rma-~~~~v~ltvv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 693 (796)
..+|++.+.||+|.--.|.+..++. ..++.+++++++...-.. +.+.++++..++..++
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~-----------~s~~~~~~~~~~~~~l 74 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSP-----------NADSWVKHCEQVCQQW 74 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCc-----------chHHHHHHHHHHHHHc
Confidence 3689999999999998888887776 456889999999643211 1233456777777665
No 165
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=42.17 E-value=83 Score=29.52 Aligned_cols=60 Identities=22% Similarity=0.214 Sum_probs=45.9
Q ss_pred CChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcC-CCceEEEecCCC
Q 003770 550 SDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHA-PCSVGILIDRGL 612 (796)
Q Consensus 550 ~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~A-pcsVgIlvdrg~ 612 (796)
....+.+.+++++.+++.||+|...+. ||.........+.+.+++-++. +++| .++|.-+
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~~--~G~~~~~~~~v~~f~~~L~~~~~~ipV-~~~DEr~ 97 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLNM--DGSESEQARRVRKFAEELKKRFPGIPV-ILVDERL 97 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBBC--TSSC-CCHHHHHHHHHHHHHHH-TSEE-EEEECSC
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCccc--CCCccHHHHHHHHHHHHHHHhcCCCcE-EEECCCh
Confidence 578899999999999999999997653 5554434445778888888876 8898 5677744
No 166
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=40.21 E-value=24 Score=37.78 Aligned_cols=112 Identities=21% Similarity=0.283 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhhhhccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------ChHHHHHHHHHhhhhHHH
Q 003770 313 LVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKV------PLREALALGILMNTKGLV 386 (796)
Q Consensus 313 ~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~------~~~e~~~lgl~l~~kG~~ 386 (796)
+.++++=|+-|.-+|..+|+..+... .+ ..++-..+-++- ..+++.+...|+ +.+|+..+|.+=+.-|-.
T Consensus 60 i~~~l~P~LIFlGIGAmtDFgpllan-P~--~~llGaaAQ~Gi-F~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGPt 135 (354)
T TIGR01109 60 IGSGIAPLLIFMGIGALTDFGPLLAN-PR--TLLLGAAAQFGI-FATVFGALTLNFFGIISFSLPQAAAIGIIGGADGPT 135 (354)
T ss_pred HhcchHHHHHHHhccHHhhhHHHHhC-hH--HHHHHHHHHhhH-HHHHHHHHHhCCCcccccChhhceeeeeeccCCCch
Confidence 34578888889999999999876532 22 222223333333 345566666787 779999998877777776
Q ss_pred HHHHHHhhh-c-cCCCChhHHHHHHHHHHHHHHhHHHHHHHHhhhhhh
Q 003770 387 ELIVLNIGK-D-RKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARR 432 (796)
Q Consensus 387 ~l~l~~~~~-~-~~~i~~~~~~~lvl~~lv~t~i~~pl~~~l~~~~~~ 432 (796)
++.+.+..- + .+.+.-..|+-| . +.-.+-||+.+.+-.+++|
T Consensus 136 ~If~s~~lap~Llg~IaVAAYsYM---a-LvPiiqPpimklLttkkeR 179 (354)
T TIGR01109 136 AIYLSGKLAPELLAAIAVAAYSYM---A-LVPIIQPPIMKALTSEKER 179 (354)
T ss_pred hhhhHhhhhhHHHHHHHHHHHHHH---H-HHhcccchHHHhhcChHHh
Confidence 666554322 1 122222233333 1 2245567888776543333
No 167
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=39.75 E-value=3.6e+02 Score=31.88 Aligned_cols=73 Identities=14% Similarity=0.163 Sum_probs=46.3
Q ss_pred HHHHHHHHhhhhccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh---------cCCChHHHHHHHHHhhhhHHH
Q 003770 316 GIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLS---------FKVPLREALALGILMNTKGLV 386 (796)
Q Consensus 316 ~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~---------~~~~~~e~~~lgl~l~~kG~~ 386 (796)
.+++|....-.|..+|...+.. .+..++.+.+.+++.-.+.+....++ .+++|.+++.+|.++++-.-+
T Consensus 70 ~~~LPpIlFe~g~~l~~~~f~~--n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPV 147 (559)
T TIGR00840 70 LYLLPPIVLDAGYFMPQRNFFE--NLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPV 147 (559)
T ss_pred HHHHHHHHHHHHhcCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchH
Confidence 5688888889999999888874 33333333333333322222222221 256999999999999988877
Q ss_pred HHHH
Q 003770 387 ELIV 390 (796)
Q Consensus 387 ~l~l 390 (796)
...-
T Consensus 148 AVla 151 (559)
T TIGR00840 148 AVLA 151 (559)
T ss_pred HHHH
Confidence 6553
No 168
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=38.60 E-value=3.5e+02 Score=25.66 Aligned_cols=100 Identities=16% Similarity=0.045 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCh---hHHHHHHHHhcCccccCCchhhhccccCCCcH-HHHHHHHHHHHHHHHH
Q 003770 31 PLAILQICLVILLTRGLAFILRPLRQPR---VIAEITGGILLGPSALGRSERFLQAVFPPKSQ-TVLDTLANLGLIFFMF 106 (796)
Q Consensus 31 ~~~l~~i~lil~~~~~~~~ll~~l~~P~---iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~-~~l~~l~~lgl~~~lF 106 (796)
..++.|+++++.+..+...+.+-+++|- ++|+++-=+.+. ++...+ +.-. ..--.+.++++.|+==
T Consensus 7 ~~~l~ql~ill~~~~lGe~i~~ll~lPiPGsViGMlLL~l~L~---~~~vk~-------~~v~~~a~~LL~~m~LfFVPa 76 (141)
T PRK04125 7 YSFLHQAFIFAAIMLISNIIASFLPIPMPASVIGLVLLFVLLC---TKVVKL-------EQVESLGTALTNNIGFLFVPS 76 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH---hCCcCH-------HHHHHHHHHHHHHHHHHHhhh
Confidence 3567899998888888888877777553 334332211111 122110 0000 0112334444444444
Q ss_pred HHhhccCchhHHhcchhHHHHHHHHHHHHHHHHH
Q 003770 107 LVGLELDPKSLRQTGKKALGIAIAGISLPFALGI 140 (796)
Q Consensus 107 ~~Gle~d~~~l~~~~~~~~~ia~~~~~i~~~~~~ 140 (796)
.+|+=..++.+++++-..+...+.+.++.++++.
T Consensus 77 gVGim~~~~ll~~~~~~Il~~ivvSTllvl~vtg 110 (141)
T PRK04125 77 GISVINSLGVMSQYPVQIIGVIIVATILLLACTG 110 (141)
T ss_pred HhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666777777776666555555555554443
No 169
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=38.34 E-value=1.8e+02 Score=31.12 Aligned_cols=74 Identities=19% Similarity=0.172 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhcchhHHHHHHHHHHHHHHHH
Q 003770 60 IAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALG 139 (796)
Q Consensus 60 v~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~i~~~~~ 139 (796)
+-.++.|+++|+. .+.+.+.+-|. ..+-..|+-|..|-.+|++.+.+.+-.-+.+++..++++....
T Consensus 175 ilPlliG~ilGNL----D~~~r~fl~~~---------~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~ 241 (314)
T TIGR00793 175 VLPFLVGFALGNL----DPELRDFFSKA---------VQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIPL 241 (314)
T ss_pred HHHHHHHHHHhcC----CHHHHHHhccC---------CCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHH
Confidence 3456789999952 22222222221 2233556889999999999999998888888887776665555
Q ss_pred HHHHHHH
Q 003770 140 IGSSFLL 146 (796)
Q Consensus 140 ~~~~~~l 146 (796)
+....++
T Consensus 242 ~~~dr~~ 248 (314)
T TIGR00793 242 ILADKFI 248 (314)
T ss_pred HHHHHHh
Confidence 5444443
No 170
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=37.67 E-value=5.1e+02 Score=28.90 Aligned_cols=96 Identities=23% Similarity=0.280 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHhhhhccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHH-HHHh--hhhHHH
Q 003770 311 EDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVP-LREALAL-GILM--NTKGLV 386 (796)
Q Consensus 311 ~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~-~~e~~~l-gl~l--~~kG~~ 386 (796)
.+.++..++|+-....=++.|+..+.. ... ..+..++++.++-.+++.+..+.++.. -.|.... |.+. -.-|.+
T Consensus 53 y~~v~~~~vPlai~LlLl~~Dlr~i~~-~g~-~~l~~F~~~~~g~viG~~va~~l~~~~l~~~~wk~ag~l~gsyiGGs~ 130 (378)
T PF05684_consen 53 YDFVWTYLVPLAIPLLLLSADLRRILR-LGG-RLLLAFLIGAVGTVIGAVVAFLLFGGFLGPEGWKIAGMLAGSYIGGSV 130 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHH-hhH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCchh
Confidence 344456666776666668899988764 233 344555666777777777777766643 2233222 2211 223555
Q ss_pred HHHHHHhhhccCCCChhHHHHHHHH
Q 003770 387 ELIVLNIGKDRKVLNDQVFAIMILM 411 (796)
Q Consensus 387 ~l~l~~~~~~~~~i~~~~~~~lvl~ 411 (796)
-++.....++. +++.+...+.+
T Consensus 131 N~~Av~~al~~---~~~~~~a~~aa 152 (378)
T PF05684_consen 131 NFVAVAEALGV---SDSLFAAALAA 152 (378)
T ss_pred HHHHHHHHHCC---CHHHHHHHHHH
Confidence 55554444433 45666665433
No 171
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=36.95 E-value=1.7e+02 Score=31.24 Aligned_cols=115 Identities=13% Similarity=0.100 Sum_probs=69.3
Q ss_pred hhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEecCCC
Q 003770 533 QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGL 612 (796)
Q Consensus 533 ~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgIlvdrg~ 612 (796)
+++++..|-.+.... ..+.+.|++.|++.++..||.-..+.-... +...+.....+..+++++||++=-|+|.
T Consensus 13 A~~~~yaV~Afn~~n--~e~~~avi~aAe~~~~Pvii~~~~~~~~~~-----~~~~~~~~~~~~a~~~~vpv~lHlDH~~ 85 (281)
T PRK06806 13 ANQENYGVGAFSVAN--MEMVMGAIKAAEELNSPIILQIAEVRLNHS-----PLHLIGPLMVAAAKQAKVPVAVHFDHGM 85 (281)
T ss_pred HHHCCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhccC-----ChHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 444556666666666 588999999999999999998875442221 1123566777889999999999999985
Q ss_pred CCCcccc-cCCcceEEEEeccCCcChHHHHHHHHHHh---cCCCeEE
Q 003770 613 GGTTQVS-ASNVSYTITVLFFGGRDDREALACGARMA---EHPGISF 655 (796)
Q Consensus 613 ~~~~~~~-~~~~~~~i~~~f~GG~ddreAL~~a~rma---~~~~v~l 655 (796)
. ..... ..+...+..++=.-..+++|-++.++++. +.-++.+
T Consensus 86 ~-~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~v 131 (281)
T PRK06806 86 T-FEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATV 131 (281)
T ss_pred C-HHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 3 00000 00001122221112235677777766654 4555553
No 172
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=36.45 E-value=4.4e+02 Score=26.13 Aligned_cols=127 Identities=14% Similarity=0.288 Sum_probs=60.9
Q ss_pred HHHHHhhHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHH--HhchhHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 003770 236 ICLTLFVPPTFKWMARQCHEGEPVEETYVCATLAAVLAAGFITD--AIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDL 313 (796)
Q Consensus 236 ~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae--~~g~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~ 313 (796)
.+..++.+|+.-.+..|.|+.. ...+..+...+......+ ..-...+++++++=++... +..++.-...+.+.
T Consensus 38 ~i~ali~g~vyml~~~KV~K~G----~~~i~~~i~gl~~~~~G~~~~~~~~~iv~gliAElI~~~-g~y~~~~~~~iay~ 112 (186)
T PF09605_consen 38 AIAALICGIVYMLMVAKVPKRG----AFLIMGIIMGLIFFLMGHGWPMLIVCIVGGLIAELILKK-GGYKSKKRNTIAYA 112 (186)
T ss_pred HHHHHHHHHHHHHHHHHcCchH----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHH
Confidence 3445566777777777875532 222222222222111221 2334566777777777753 34443333332221
Q ss_pred H-----HHHHHHHHHhhhhcc---------cc-chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003770 314 V-----SGIFLPLYFVSSGLK---------TN-IATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFK 367 (796)
Q Consensus 314 ~-----~~~~~PlfF~~~G~~---------~d-l~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~ 367 (796)
. .+-+.|++|.-=... -+ ...+.+..+.+...+.++..+++-++|+++..+..|
T Consensus 113 vf~~~~~g~~~p~~~~~~~y~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~v~a~lG~~lG~kllk 181 (186)
T PF09605_consen 113 VFSLGYMGPYLPIWFMRDAYLAAMIAKGMGAEYADTMISFFTPWMLIIIIIITFVGALLGALLGKKLLK 181 (186)
T ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHcCCCHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 145667766533332 11 111111112233445556667777788887776654
No 173
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=35.48 E-value=6.2e+02 Score=27.62 Aligned_cols=253 Identities=15% Similarity=0.173 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHH------HHHHHHHh
Q 003770 36 QICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGL------IFFMFLVG 109 (796)
Q Consensus 36 ~i~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl------~~~lF~~G 109 (796)
++..+++...+.+.-.+|---|...--|=.|+++.+.-+.... +..........+..+-+.|+ .++.+-+|
T Consensus 4 ~~vMi~vg~~liYLai~k~~EPlLLlPigfG~il~N~P~~~~~---~~~~~~~~~g~l~~~~~~gi~~~l~P~LIF~GIG 80 (360)
T PF03977_consen 4 NIVMILVGFLLIYLAIKKKYEPLLLLPIGFGMILVNIPLSGLM---DQPVGGGEIGGLQPIYYFGISNGLFPPLIFMGIG 80 (360)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhcCchhhc---ccccccCCCChHHHHHHHhhhcchhhHHHHHHHh
Confidence 3444455555556666666678888888899998753221110 00000001122333333332 23556678
Q ss_pred hccCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCChh
Q 003770 110 LELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADV 189 (796)
Q Consensus 110 le~d~~~l~~~~~~~~~ia~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~ 189 (796)
--+|+.-+..+.|..+.=+..++-+- ..+..+..++.. . .++..+|++-..=.|..+.- ..++.+.-+
T Consensus 81 AmtDFgpllanP~~~llGaaAQ~Gif--~t~~~A~~lGf~------~-~eAAsIgIIGgADGPtsIf~---s~~LAp~Ll 148 (360)
T PF03977_consen 81 AMTDFGPLLANPKTLLLGAAAQFGIF--ATFLGAILLGFT------P-KEAASIGIIGGADGPTSIFV---SSKLAPHLL 148 (360)
T ss_pred HHHhhHHHHhCHHHHHHHHHHHHhHH--HHHHHHHHhCCC------H-HHhhHhhhcccCCCcHHHHH---HHhhhHHHH
Confidence 88999999999988543333332211 111122223211 1 34555555443322211111 112222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH----h--cCCCCc-chH
Q 003770 190 GRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQ----C--HEGEPV-EET 262 (796)
Q Consensus 190 g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~----~--~~~~~~-~e~ 262 (796)
|.+++++ . .+...+-.+-+|+++-+..+ . ++.+++ +..
T Consensus 149 gpIaVaA---------------Y--------------------sYMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~e 193 (360)
T PF03977_consen 149 GPIAVAA---------------Y--------------------SYMALVPIIQPPIMKLLTTKKERKIRMKQLRPVSKTE 193 (360)
T ss_pred HHHHHHH---------------H--------------------HHHHHHhhhhhHHHHHhcCHHHHhccCCCCCCCChHH
Confidence 2221110 0 01122223334555444221 1 222222 223
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhH
Q 003770 263 YVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSW 341 (796)
Q Consensus 263 ~~~~~l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~ 341 (796)
.+.+-+....+++++. =...+.+|.+.+|-.+.+ ...-+++.+..+.-..++..-+.-..+|...+-+.+.+..+.
T Consensus 194 kiiFpivv~~~~~ll~--P~a~pLig~Lm~Gnl~rE-sgv~~rLs~taqn~l~nivTi~LGl~vGat~~a~~fL~~~tl 269 (360)
T PF03977_consen 194 KIIFPIVVTILVGLLL--PSAAPLIGMLMFGNLLRE-SGVVERLSKTAQNELMNIVTIFLGLTVGATMTAETFLNPQTL 269 (360)
T ss_pred HHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhcCHHHH
Confidence 3445555555544432 234689999999999985 334444444443333333333345677888776666554433
No 174
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=35.32 E-value=5e+02 Score=26.48 Aligned_cols=82 Identities=11% Similarity=0.245 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHHhH
Q 003770 340 SWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMT 419 (796)
Q Consensus 340 ~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~~~lvl~~lv~t~i~ 419 (796)
.|...+.-++.+.+.-+..+++.++.+|.+.. . ...+.+|..-.-+...+..+.|-...-+-..++++-++-..+.
T Consensus 76 ~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~--~--~~Sl~pkSVTtpiAi~is~~iGG~~sLta~~VvitGi~Ga~~g 151 (215)
T PF04172_consen 76 NWIPILVGVLVGSLVSIFSAVLLARLLGLSPE--I--ILSLAPKSVTTPIAIEISEQIGGIPSLTAVFVVITGILGAVLG 151 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--H--HHHHHHHHhhHHHHHHHHHHhCChHHHHHHHHHHHhhHHHHhH
Confidence 45445555566666777788888899998654 3 3335789987777777777777665444444444444444444
Q ss_pred HHHHHH
Q 003770 420 TPLVMA 425 (796)
Q Consensus 420 ~pl~~~ 425 (796)
++++++
T Consensus 152 ~~llk~ 157 (215)
T PF04172_consen 152 PPLLKL 157 (215)
T ss_pred HHHHhH
Confidence 555554
No 175
>COG3748 Predicted membrane protein [Function unknown]
Probab=34.38 E-value=3.1e+02 Score=29.58 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=31.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhHHHHHHHHHHHHHHH
Q 003770 300 GPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGK 355 (796)
Q Consensus 300 ~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~K 355 (796)
+.+++.-.+|-..- +.+-+|..|+.+-=...+..- ....|.++.++.+.++..|
T Consensus 212 P~~gk~akqRS~HN-nylTLPVlF~MlSNHyp~~~g-t~fnWii~alv~l~gV~IR 265 (407)
T COG3748 212 PKLGKTAKQRSRHN-NYLTLPVLFTMLSNHYPLAFG-TQFNWIIAALVFLMGVLIR 265 (407)
T ss_pred cchhhhhhhhhhhc-ceehHHHHHHHHhccCccccc-CchhHHHHHHHHHHHHHHH
Confidence 33444444443332 357789999887666555432 2357877666666666555
No 176
>COG2035 Predicted membrane protein [Function unknown]
Probab=34.36 E-value=5.8e+02 Score=26.97 Aligned_cols=46 Identities=26% Similarity=0.479 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhcC--ccccCCc
Q 003770 30 LPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLG--PSALGRS 77 (796)
Q Consensus 30 l~~~l~~i~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilG--P~~lg~~ 77 (796)
.|+..--+.-++.++++..++++. .|.++-...+|+++| |+.++.+
T Consensus 59 i~l~~G~~~~i~~~a~ii~~ll~~--yp~~t~~fF~GlI~~sVp~llk~i 106 (276)
T COG2035 59 IPLGIGMLLGIFLFAKIIEYLLEN--YPVPTLAFFAGLILGSVPSLLKEI 106 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556667778888888776 566667777899988 4444443
No 177
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=33.91 E-value=2.3e+02 Score=32.04 Aligned_cols=101 Identities=20% Similarity=0.158 Sum_probs=63.6
Q ss_pred hHHHHHHHhhcCCCceEEEecCCCCCCcccccCCcceEEEEeccCCcChHHHHHHHHHHh-cCCCeEEEEEEeeecc-cc
Q 003770 589 FRWVNQRVLKHAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMA-EHPGISFIVIRFLLAA-DA 666 (796)
Q Consensus 589 ~~~vn~~vl~~ApcsVgIlvdrg~~~~~~~~~~~~~~~i~~~f~GG~ddreAL~~a~rma-~~~~v~ltvv~~~~~~-~~ 666 (796)
..++|++|+-.+|- +..+ . ..+.....+|||.|.||-|.--...++-+.+ .|+.+.|-=+.|.-+. ..
T Consensus 225 ~ds~k~rvl~i~~r----l~~~-i-----~~~c~~~s~VcVlfSGGvDs~vvA~l~h~~vp~ne~IdLINVaF~n~e~~~ 294 (520)
T KOG0573|consen 225 RDSLKDRVLVIPPR----LCAN-I-----LLRCIHESNVCVLFSGGVDSTVVAVLAHYVVPENEPIDLINVAFGNPEGSK 294 (520)
T ss_pred HHHHhhhhhccChh----Hhhh-c-----cccccccCcEEEEecCCchHHHHHHHHHhhcCCCCceeEEEeeccCCCccc
Confidence 45677787776661 1111 0 0112234599999999999999999998888 5666666555554221 11
Q ss_pred cCCccccCCcCccccHHHHHHHHHhhcCCCCceEEEEEEe
Q 003770 667 IGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLV 706 (796)
Q Consensus 667 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~~~e~~v 706 (796)
+ .+.++++....-++|++...+ +....++|.-|
T Consensus 295 ~------~~~PDRktgr~g~~eL~s~~P-~R~~nlV~vnV 327 (520)
T KOG0573|consen 295 E------QNVPDRKTGRRGLEELQSLYP-KRSWNLVEVNV 327 (520)
T ss_pred c------cCCccHHHHHHHHHHHHHhCC-cceEEEEeccC
Confidence 1 223667777788899998774 33456666555
No 178
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=33.19 E-value=6.9e+02 Score=27.47 Aligned_cols=87 Identities=11% Similarity=0.154 Sum_probs=50.8
Q ss_pred hHHHHHHHHHhhcCCCCC-----hhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003770 284 HAMFGAFVVGVLVPKEGP-----FANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVG 358 (796)
Q Consensus 284 ~~~lgafvaGl~l~~~~~-----~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~ 358 (796)
++.+=+.++|+++.--++ ....+.+-++.+. ....|+-.+.+|..+..........+......++..++.-++.
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg-~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i 322 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLG-AAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLI 322 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHH-hhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHH
Confidence 455555555555542121 1255556666665 7889999999999877543321122333333455666666666
Q ss_pred HHHHHHhcCCChH
Q 003770 359 TFVVSLSFKVPLR 371 (796)
Q Consensus 359 ~~l~~~~~~~~~~ 371 (796)
++...+.++++..
T Consensus 323 ~~~~~~~~~l~~~ 335 (385)
T PF03547_consen 323 GIGIVFLLGLDGD 335 (385)
T ss_pred HHHHHHHHCCCHH
Confidence 7777777776544
No 179
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=32.60 E-value=77 Score=30.11 Aligned_cols=35 Identities=23% Similarity=0.233 Sum_probs=26.9
Q ss_pred EEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 003770 626 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFL 661 (796)
Q Consensus 626 ~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~ 661 (796)
+|++.|.||+|.--.|.++.+...+. -++.++++-
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~d 35 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLD 35 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeC
Confidence 57899999999999999988866542 356666664
No 180
>cd01118 ArsB_permease Anion permease ArsB. These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life.
Probab=32.56 E-value=7.5e+02 Score=27.66 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=16.4
Q ss_pred HHHHHhcccCCChhHHHHHHHHhc
Q 003770 46 GLAFILRPLRQPRVIAEITGGILL 69 (796)
Q Consensus 46 ~~~~ll~~l~~P~iv~~ilaGiil 69 (796)
+..++.++.++|.-+.-+++.+++
T Consensus 10 i~l~~~~~~~i~~~~~al~~~~ll 33 (416)
T cd01118 10 LVLVIWRPFGLPEAVWAVLGAVIA 33 (416)
T ss_pred HHHHHHccCCCChHHHHHHHHHHH
Confidence 344666777788887777776655
No 181
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes. Substrates shown to be transported by these proteins include citrate and phosphate []. This entry also contains the melanocyte-specific transporter protein P, mutation of which leads to albinism []. Another protein in this entry, SAC1, has been shown to regulate the sulphur deprivation response in Chlamydomonas by inducing cysteine biosynthesis, though its precise role in this induction is not known [].; GO: 0015137 citrate transmembrane transporter activity, 0015746 citrate transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=30.57 E-value=7.3e+02 Score=26.93 Aligned_cols=17 Identities=12% Similarity=0.374 Sum_probs=11.7
Q ss_pred HHHHHHHHhcCccCChh
Q 003770 173 PVLARILAELKLLTADV 189 (796)
Q Consensus 173 ~vv~~iL~el~ll~s~~ 189 (796)
|++.++.++.|+-++++
T Consensus 118 Pi~~~~~~~~~i~~~~~ 134 (351)
T PF03600_consen 118 PIVLSLARKLGIPPSPL 134 (351)
T ss_pred HHHHHHHHHcCCChHHH
Confidence 77888888888544433
No 182
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=30.46 E-value=2.4e+02 Score=28.96 Aligned_cols=36 Identities=14% Similarity=-0.060 Sum_probs=28.3
Q ss_pred eEEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEeeec
Q 003770 625 YTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLA 663 (796)
Q Consensus 625 ~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~~ 663 (796)
.++++.|.||+|+--.|.++.+.. ++ .+.|+.+-+.
T Consensus 26 ~~~~~s~S~Gkds~VlL~l~~~~~-~~--~i~vv~vDTg 61 (226)
T TIGR02057 26 HGLVQTSAFGIQALVTLHLLSSIS-EP--MIPVIFIDTL 61 (226)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhh-CC--CCCEEEEeCC
Confidence 479999999999999999999976 23 3566666543
No 183
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=29.41 E-value=2e+02 Score=33.55 Aligned_cols=69 Identities=17% Similarity=0.277 Sum_probs=37.6
Q ss_pred HHHHHHHHhhhhccccchhhhhhhhHHHHH---------HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHH
Q 003770 316 GIFLPLYFVSSGLKTNIATIQGLQSWGLLA---------LVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLV 386 (796)
Q Consensus 316 ~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~---------~i~~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~~ 386 (796)
.+++|---.-.|.+++-..+... .+-+. ..+++....|+.+. ....++++++|++.+|-+.+.---|
T Consensus 103 ~vLLPpiif~sgy~l~k~~fF~n--~~si~~fa~~Gt~IS~~~ig~gv~~~~~--~~~~~~~~f~d~L~fGaliSATDPV 178 (575)
T KOG1965|consen 103 LVLLPPIIFNSGYSLKKKQFFRN--IGSILLFAIFGTFISAVIIGAGVYLLGF--GLLIYDLSFKDCLAFGALISATDPV 178 (575)
T ss_pred HHhhchhhhcccceechhhhhhh--hHHHHHhhhcceeeehhHHhhHHHHHhc--ccccccccHHHHHHHhhHhcccCch
Confidence 45556555667888886665431 11111 11122222233222 2234578999999999987765544
Q ss_pred HH
Q 003770 387 EL 388 (796)
Q Consensus 387 ~l 388 (796)
..
T Consensus 179 tv 180 (575)
T KOG1965|consen 179 TV 180 (575)
T ss_pred HH
Confidence 43
No 184
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=29.11 E-value=6.2e+02 Score=25.67 Aligned_cols=51 Identities=14% Similarity=0.219 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 003770 159 FLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAV 212 (796)
Q Consensus 159 ~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~~~ll~i~~ 212 (796)
..-++|-..|.|+ ++..+-++.| -+.+..+...+..++.....++=..+..
T Consensus 25 ltg~~GGlvSSTA--~t~~la~~~r-~~p~~~~~~~~~i~lA~~~m~~R~l~iv 75 (211)
T PF13194_consen 25 LTGLLGGLVSSTA--TTVSLARRSR-ENPELSRLLAAGILLASAVMFVRVLLIV 75 (211)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHh-hCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556555 3444444444 2445566666666666665554444333
No 185
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=29.06 E-value=3.6e+02 Score=32.35 Aligned_cols=31 Identities=10% Similarity=0.154 Sum_probs=15.0
Q ss_pred cccCCCCCCccHHHHHHHHHHHHHHHHHH-HHH
Q 003770 19 VFQGDSPLDFALPLAILQICLVILLTRGL-AFI 50 (796)
Q Consensus 19 ~~~~~~pl~~~l~~~l~~i~lil~~~~~~-~~l 50 (796)
.++.-||+ ...+.+--..++.+++|.+. |+.
T Consensus 459 ~L~sl~p~-s~al~~AAiaGV~LF~SglIaG~~ 490 (643)
T PF10136_consen 459 LLHSLDPF-SPALLYAAIAGVWLFLSGLIAGYF 490 (643)
T ss_pred HHHhcCcc-ccHHHHHHHHHHHHHHHHHHHhhH
Confidence 34467788 34334444444444444443 443
No 186
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=28.96 E-value=1.1e+02 Score=28.76 Aligned_cols=58 Identities=14% Similarity=0.165 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEecCCC
Q 003770 552 MHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGL 612 (796)
Q Consensus 552 m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgIlvdrg~ 612 (796)
..+.|.+++++.+++.||+|...+ .+|.........+.+.+++-++-+++| +++|.-+
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~--~~G~~~~~~~~v~~f~~~L~~~~~~~v-~~~DEr~ 99 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLN--MDGTEGPRTERARKFANRLEGRFGLPV-VLVDERL 99 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCC--CCCCcCHHHHHHHHHHHHHHHHhCCCE-EEEcCCc
Confidence 468899999999999999998765 355543334457778888777778887 5677744
No 187
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=28.47 E-value=1e+02 Score=29.61 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=24.8
Q ss_pred EEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 003770 626 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFL 661 (796)
Q Consensus 626 ~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~ 661 (796)
|+++.|.||+|+.-.|.++.+...+. .++.+-
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~----~vv~~d 32 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKV----PVVFID 32 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTC----EEEEEE
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCC----cEEEEe
Confidence 57899999999999999999998773 556554
No 188
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=27.62 E-value=6.8e+02 Score=26.60 Aligned_cols=105 Identities=17% Similarity=0.166 Sum_probs=51.5
Q ss_pred HHHHHhhhhccccchhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH-hhhhHHHHHHHHHhhhc
Q 003770 319 LPLYFVSSGLKTNIATIQGLQ-SWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGIL-MNTKGLVELIVLNIGKD 396 (796)
Q Consensus 319 ~PlfF~~~G~~~dl~~l~~~~-~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~-l~~kG~~~l~l~~~~~~ 396 (796)
+.+-+...|++++..++.... .+......++.-++.-.+.++..+..++.+......+-+. ..|-|..+.+.......
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~~s~v~t~~~~g 93 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGTASNVFTYLLKG 93 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCchHHHHHHHHhCC
Confidence 334466778888877665321 1112233334455556666677777777654433322221 23444444333333211
Q ss_pred cCCCChhHHHHHHHHHHHHHHhHHHHHHHHh
Q 003770 397 RKVLNDQVFAIMILMAVVTTFMTTPLVMAVY 427 (796)
Q Consensus 397 ~~~i~~~~~~~lvl~~lv~t~i~~pl~~~l~ 427 (796)
|.+.-..++....+.+.++.|+...++
T Consensus 94 ----n~~la~~~~~~stlls~vt~Pl~l~~~ 120 (286)
T TIGR00841 94 ----DMALSISMTTCSTLLALGMMPLLLYIY 120 (286)
T ss_pred ----CHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 223333333444455666777766655
No 189
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=27.24 E-value=1.5e+02 Score=32.93 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=31.6
Q ss_pred cCCcceEEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEeee
Q 003770 620 ASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLL 662 (796)
Q Consensus 620 ~~~~~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~ 662 (796)
+..+..++++.+.||.|.--|+.++.+. +.++..++|..
T Consensus 168 P~g~~~kvlvllSGGiDS~vaa~ll~kr----G~~V~av~~~~ 206 (371)
T TIGR00342 168 PVGTQGKVLALLSGGIDSPVAAFMMMKR----GCRVVAVHFFN 206 (371)
T ss_pred CcCcCCeEEEEecCCchHHHHHHHHHHc----CCeEEEEEEeC
Confidence 4455679999999999999999887552 67888899874
No 190
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=26.84 E-value=2.2e+02 Score=30.46 Aligned_cols=74 Identities=11% Similarity=0.089 Sum_probs=54.1
Q ss_pred hhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEecCCC
Q 003770 533 QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGL 612 (796)
Q Consensus 533 ~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgIlvdrg~ 612 (796)
+++++..|-.+.... ..+.+.|++.|++.++..||.-..+.-...| ...+....+...+++++||++=-|.|.
T Consensus 13 A~~~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~~~~~~g-----~~~~~~~~~~~a~~~~VPValHLDH~~ 85 (284)
T PRK12737 13 AQAEGYAVPAFNIHN--LETLQVVVETAAELRSPVILAGTPGTFSYAG-----TDYIVAIAEVAARKYNIPLALHLDHHE 85 (284)
T ss_pred HHHcCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCccHHhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 334555666666666 4889999999999999999976644322212 123677788899999999999999985
Q ss_pred C
Q 003770 613 G 613 (796)
Q Consensus 613 ~ 613 (796)
.
T Consensus 86 ~ 86 (284)
T PRK12737 86 D 86 (284)
T ss_pred C
Confidence 3
No 191
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function.
Probab=26.66 E-value=1e+03 Score=27.28 Aligned_cols=128 Identities=20% Similarity=0.256 Sum_probs=63.6
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHHHH----HHHHHHHhhhhccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003770 289 AFVVGVLVPKEGPFANALVEKVEDLVSG----IFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSL 364 (796)
Q Consensus 289 afvaGl~l~~~~~~~~~l~~kl~~~~~~----~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~ 364 (796)
..+.|-++.+ .|.-+++.+|+...-.. +.+-. .+++-. ...+|+ +.+++.++++|-++ -+
T Consensus 67 ilvtG~~lA~-sp~v~r~l~~lA~~p~t~~~Ai~lv~---~vs~i~------s~inWG--~gLV~gallArela----rr 130 (453)
T PF02667_consen 67 ILVTGYALAS-SPPVKRLLDRLASLPKTPRQAIVLVA---LVSMIA------SWINWG--FGLVVGALLARELA----RR 130 (453)
T ss_pred HHHHHHHHhC-ChHHHHHHHHHHhcCCCCcceeeHHH---HHHHHH------HHHHhh--HHHHHHHHHHHHHH----Hh
Confidence 3477888884 55666666776654322 22222 222221 112454 33455666677432 22
Q ss_pred hcCCChHH---HHHHHH---HhhhhHHHHHHHHHhhhc----cC--------CCChhHHHHHHHHHHHHHHhHHHHHHHH
Q 003770 365 SFKVPLRE---ALALGI---LMNTKGLVELIVLNIGKD----RK--------VLNDQVFAIMILMAVVTTFMTTPLVMAV 426 (796)
Q Consensus 365 ~~~~~~~e---~~~lgl---~l~~kG~~~l~l~~~~~~----~~--------~i~~~~~~~lvl~~lv~t~i~~pl~~~l 426 (796)
.-+.+.|- +-+.|+ -++.-|...+..++-+.. .+ .+++..|+-.-+...+..+++.|++.+.
T Consensus 131 ~~~vdYpllvAaaY~g~~vWh~GlSgS~pL~~At~g~~l~~~~~~~~~~~vIP~seTif~~~nli~~~~~~v~~pli~~~ 210 (453)
T PF02667_consen 131 VKGVDYPLLVAAAYSGFVVWHGGLSGSAPLLVATPGHFLEKIIGGLVITGVIPTSETIFSPYNLIIVVVLLVVLPLINYL 210 (453)
T ss_pred ccCCcHHHHHHHHHHHHHHHhccccchhHHHhcCCCCcHHHHhcccccCCccCcchhhcchHHHHHHHHHHHHHHHHHHH
Confidence 22343332 222222 233444555555542221 12 2345666655555555567788988888
Q ss_pred hhhhhh
Q 003770 427 YKPARR 432 (796)
Q Consensus 427 ~~~~~~ 432 (796)
..|+++
T Consensus 211 m~P~~~ 216 (453)
T PF02667_consen 211 MAPKPE 216 (453)
T ss_pred hCCCCc
Confidence 877665
No 192
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=26.58 E-value=8.2e+02 Score=26.62 Aligned_cols=66 Identities=11% Similarity=0.060 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCChhHHHHHHHH
Q 003770 346 LVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILM 411 (796)
Q Consensus 346 ~i~~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~~~lvl~ 411 (796)
..++..++.-+.+-.+..++.|++.-|+..++--.+.-..++++.+...++..-+.-+-|...++.
T Consensus 59 ~~~~lg~liPl~~~~iLr~~~~l~~~daaAiAAhYGSVSavTF~~a~~~L~~~gi~yeg~m~a~~a 124 (327)
T PF05982_consen 59 AAVLLGILIPLIAFPILRRLGKLDRADAAAIAAHYGSVSAVTFAAALAFLESQGISYEGYMVALLA 124 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCChhhHHHHHHHcCchHHHHHHHHHHHHHHCCCCccccHHHHHH
Confidence 334444444444444455567999999999998888888888888888888777777777665443
No 193
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=26.28 E-value=2.2e+02 Score=30.41 Aligned_cols=72 Identities=15% Similarity=0.241 Sum_probs=52.9
Q ss_pred hccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEecCCC
Q 003770 534 QLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGL 612 (796)
Q Consensus 534 ~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgIlvdrg~ 612 (796)
++++..|-.+...+ ..+.+.+++.|++.++..||.-..+.-...| -..+..+.+...+++++||++=-|.|.
T Consensus 14 ~~~~yaV~AfNv~n--~e~~~avi~AAee~~sPvIlq~~~~~~~~~g-----~~~~~~~~~~~A~~~~VPValHLDH~~ 85 (284)
T PRK12857 14 EKGGYAVGAFNCNN--MEIVQAIVAAAEAEKSPVIIQASQGAIKYAG-----IEYISAMVRTAAEKASVPVALHLDHGT 85 (284)
T ss_pred HHcCCeEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEechhHhhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 33445555666666 4889999999999999999987654422222 223666777888999999999999985
No 194
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=26.04 E-value=3.2e+02 Score=26.64 Aligned_cols=84 Identities=15% Similarity=0.161 Sum_probs=53.0
Q ss_pred eccCCcChHHHHHHHHHHhcCCCeEEEEEEeeecccccCCccccCCcCccccHHHHHHHHHhhcCCCCceEEEEEEecCh
Q 003770 630 LFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLVRNT 709 (796)
Q Consensus 630 ~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~~~e~~v~~~ 709 (796)
+..||- ..-.+.+|+.|+++...++-++.=-... +...++.+++++.. ..+|.|...-+.|.
T Consensus 4 litGG~-gglg~~la~~La~~~~~~~il~~r~~~~--------------~~~~~~~i~~l~~~---g~~v~~~~~Dv~d~ 65 (181)
T PF08659_consen 4 LITGGL-GGLGQSLARWLAERGARRLILLGRSGAP--------------SAEAEAAIRELESA---GARVEYVQCDVTDP 65 (181)
T ss_dssp EEETTT-SHHHHHHHHHHHHTT-SEEEEEESSGGG--------------STTHHHHHHHHHHT---T-EEEEEE--TTSH
T ss_pred EEECCc-cHHHHHHHHHHHHcCCCEEEEeccCCCc--------------cHHHHHHHHHHHhC---CCceeeeccCccCH
Confidence 445554 5688899999999987777666532111 12245678887775 34789998889999
Q ss_pred HHHHHHHHhccC-C---CEEEEccCC
Q 003770 710 AETIAVIREVSR-C---NLLLVGRMP 731 (796)
Q Consensus 710 ~~~~~~l~~~~~-~---DL~iVGr~~ 731 (796)
+++.+++.++.. + |-+|-+.+.
T Consensus 66 ~~v~~~~~~~~~~~~~i~gVih~ag~ 91 (181)
T PF08659_consen 66 EAVAAALAQLRQRFGPIDGVIHAAGV 91 (181)
T ss_dssp HHHHHHHHTSHTTSS-EEEEEE----
T ss_pred HHHHHHHHHHHhccCCcceeeeeeee
Confidence 999999988764 3 456655543
No 195
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=25.72 E-value=2.3e+02 Score=30.03 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=42.6
Q ss_pred eEEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEeeecccccCCccccCCcCccccHHHHHHHHHhhc
Q 003770 625 YTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKT 693 (796)
Q Consensus 625 ~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 693 (796)
++|+|.+.||+|.--+|.+..++.++ ++++++++...-.. ..+.+.+...++....
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~~~~-----------~~~~~~~~~~~~~~~~ 77 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHGLRG-----------YSDQEAELVEKLCEKL 77 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCCCCC-----------ccchHHHHHHHHHHHh
Confidence 69999999999999999999999988 89999998643211 1234456666666654
No 196
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=25.61 E-value=1.1e+02 Score=28.27 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=25.8
Q ss_pred EeEEecCCCChHHHHHHHHHhcCccEEEecCcccc
Q 003770 542 PMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQ 576 (796)
Q Consensus 542 ~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~ 576 (796)
-.-++-|...||..|.++|++.++|++|-|.....
T Consensus 73 lIYSiRPP~El~~~il~lA~~v~adlii~pL~~e~ 107 (127)
T PF03686_consen 73 LIYSIRPPPELQPPILELAKKVGADLIIRPLGGES 107 (127)
T ss_dssp EEEEES--TTSHHHHHHHHHHHT-EEEEE-BTTB-
T ss_pred EEEEeCCChHHhHHHHHHHHHhCCCEEEECCCCCC
Confidence 44566677899999999999999999999996553
No 197
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=25.50 E-value=3.2e+02 Score=30.32 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhccCchhHHhcchhHHHHHHH
Q 003770 99 LGLIFFMFLVGLELDPKSLRQTGKKALGIAIA 130 (796)
Q Consensus 99 lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia~~ 130 (796)
.|+.+.|+..|.+.|++.+++..++...+++.
T Consensus 117 ~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG 148 (371)
T KOG2718|consen 117 PGLLSNMLSFGIKLDMDLFAGMIKRPTPLALG 148 (371)
T ss_pred cHHHHHHHHHhcCccHHHHhhHhhCCcceeeh
Confidence 66778899999999999999999988766544
No 198
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=25.37 E-value=6.4e+02 Score=24.60 Aligned_cols=88 Identities=22% Similarity=0.283 Sum_probs=49.3
Q ss_pred chhHHHHHHHHHhhcCCCC---ChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhh--hhHHHHHHHHHHHHHHHH
Q 003770 282 GIHAMFGAFVVGVLVPKEG---PFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGL--QSWGLLALVILTACLGKI 356 (796)
Q Consensus 282 g~~~~lgafvaGl~l~~~~---~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~--~~~~~~~~i~~~~~~~K~ 356 (796)
.+...-|+++.|+++.+-. |.. +......+..++.+-+|...+|++.-...+... ..+..... -++.++.-.
T Consensus 22 ~LG~a~G~L~vgL~~G~~~~~~~~~--~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~-~~~i~~~~~ 98 (169)
T PF06826_consen 22 SLGAAGGVLFVGLILGALGRTGPIF--LPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLL-GVIITLVPL 98 (169)
T ss_pred eccccHHHHHHHHHHHHhhhccCCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHH
Confidence 3344457777777776421 111 344455556678888999999998764333221 23333332 233333444
Q ss_pred HHHHHHHH-hcCCChHH
Q 003770 357 VGTFVVSL-SFKVPLRE 372 (796)
Q Consensus 357 ~~~~l~~~-~~~~~~~e 372 (796)
+.++..++ ++|+++-.
T Consensus 99 ~~~~~~~~~~~~l~~~~ 115 (169)
T PF06826_consen 99 LIALVIGRYLFKLNPGI 115 (169)
T ss_pred HHHHHHHHHHcCCCHHH
Confidence 55556666 88888554
No 199
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=24.91 E-value=2.4e+02 Score=30.04 Aligned_cols=74 Identities=11% Similarity=0.076 Sum_probs=54.3
Q ss_pred hhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEecCCC
Q 003770 533 QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGL 612 (796)
Q Consensus 533 ~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgIlvdrg~ 612 (796)
+++++-.|-.+.... ..+.+.|++.|++.++..||.-..+.-...+ ...+....+...+++..||++=-|+|.
T Consensus 11 A~~~~yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~s~~~~~~~~-----~~~~~~~~~~~a~~~~VPValHLDHg~ 83 (282)
T TIGR01858 11 AQAGGYAVPAFNIHN--LETIQAVVETAAEMRSPVILAGTPGTFKHAG-----TEYIVALCSAASTTYNMPLALHLDHHE 83 (282)
T ss_pred HHHcCCeEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEeCccHHhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 333455555666666 5889999999999999999987654422211 223667888999999999999999985
Q ss_pred C
Q 003770 613 G 613 (796)
Q Consensus 613 ~ 613 (796)
+
T Consensus 84 ~ 84 (282)
T TIGR01858 84 S 84 (282)
T ss_pred C
Confidence 3
No 200
>PF01889 DUF63: Membrane protein of unknown function DUF63; InterPro: IPR002749 These proteins of unknown function are found in archaebacteria and are probably transmembrane proteins.
Probab=24.70 E-value=8.6e+02 Score=25.81 Aligned_cols=28 Identities=14% Similarity=0.339 Sum_probs=18.3
Q ss_pred cCccCChhHHHHHHHHHHHHHHHHHHHH
Q 003770 182 LKLLTADVGRMAMSAAAVNDVAAWILLA 209 (796)
Q Consensus 182 l~ll~s~~g~l~ls~a~i~D~~~~~ll~ 209 (796)
.+....+.+..++-+=++|-....+..-
T Consensus 169 ~~~~~~~~~~~vv~aH~lDa~sT~vGid 196 (273)
T PF01889_consen 169 VNILTDPLGLLVVFAHLLDASSTFVGID 196 (273)
T ss_pred hhhhccchhHHHHHHHHHhHHHHhhhee
Confidence 3555667788887777777666554443
No 201
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=24.48 E-value=5.2e+02 Score=28.22 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=34.6
Q ss_pred HHHHHHHHhhccCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 003770 101 LIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLL 146 (796)
Q Consensus 101 l~~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~i~~~~~~~~~~~l 146 (796)
+-+..|..|..+|+..+.+.+-+...+++..++++..+++....++
T Consensus 205 Lp~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~~Rl~ 250 (326)
T PRK05274 205 IPFFAFALGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLADRLI 250 (326)
T ss_pred HHHHHHHHhcceeHhHHHhcCCcchhhhhhHhhccchhhHhHhhee
Confidence 4456677999999999999888888888887777766555544444
No 202
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=24.33 E-value=9.5e+02 Score=26.18 Aligned_cols=75 Identities=15% Similarity=0.171 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhh
Q 003770 263 YVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQS 340 (796)
Q Consensus 263 ~~~~~l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~ 340 (796)
.+.+-+....+++++. =...+.+|.+.+|-.+.+ ...-+++.+..+.-..++..-+.-..+|...+-+.+.+..+
T Consensus 194 Ki~Fpivv~~i~~ll~--P~a~pLig~Lm~GnllrE-sGv~~rl~~taqn~l~nivTifLGl~vG~~~~A~~fL~~~t 268 (354)
T TIGR01109 194 KILFPIVLLLLVALLI--PKALPLVGMLMFGNLMRE-SGVVERLSKTASNELLNIVTILLGLSVGAKMRADKFLTPQT 268 (354)
T ss_pred hhHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHhhCChHH
Confidence 3444444444444432 234689999999999985 33334444433333323333333467788877766654333
No 203
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.89 E-value=9.1e+02 Score=25.80 Aligned_cols=39 Identities=23% Similarity=0.338 Sum_probs=22.4
Q ss_pred HHHHHHHHhhhhccccchhhhhhhhHHHHHHHHHHHHHHH
Q 003770 316 GIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGK 355 (796)
Q Consensus 316 ~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~K 355 (796)
-+-+|..|..+--.-.+..- +...|.++.++.+.+.+.|
T Consensus 230 ylTlPvLf~MiSnHyp~~y~-~~~nWlil~li~~~g~~IR 268 (300)
T PF06181_consen 230 YLTLPVLFLMISNHYPMTYG-HPYNWLILALIMLAGALIR 268 (300)
T ss_pred eeHHHHHHHHHhccCccccc-cchhHHHHHHHHHHHHHHH
Confidence 46689888886544443322 2346765555555555555
No 204
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=23.78 E-value=1.4e+03 Score=27.81 Aligned_cols=97 Identities=16% Similarity=0.173 Sum_probs=56.5
Q ss_pred eEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHHh
Q 003770 453 RILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAF 532 (796)
Q Consensus 453 riLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 532 (796)
+||.-+.+|+..-+++++...+++ +. +|++--|.+.|..+..+ .+. ....+.=-.|..+
T Consensus 562 QILLlV~nPrss~~Lirf~N~LKK----gg--LYilGHV~~gd~~~~~~--d~l-------------~~q~~~W~s~vd~ 620 (945)
T KOG1288|consen 562 QILLLVSNPRSSCNLIRFCNDLKK----GG--LYILGHVIVGDDFSASM--DEL-------------QQQQRAWLSFVDD 620 (945)
T ss_pred eEEEEecCCcccchHHHHHHhhcc----cc--eEEEEEEEecccccccc--chh-------------hHHHHHHHHHHHH
Confidence 688889999999999988888764 34 48876666665444211 000 0001111122222
Q ss_pred hhccCeEEEEeEEecCCCChHHHHHHHHHh-----cCccEEEecCccc
Q 003770 533 QQLSRVSVRPMTAISSMSDMHEDICTTAES-----KRAAIIILPFHKH 575 (796)
Q Consensus 533 ~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e-----~~a~lIilp~h~~ 575 (796)
+ +++.=....+| .++-.+|-++-+- .+.+.+|+|||..
T Consensus 621 ~---~iKAFvelt~s--psir~Giq~Lir~SGLGgMKPNt~VlgF~d~ 663 (945)
T KOG1288|consen 621 A---GIKAFVELTIS--PSIRWGIQHLIRLSGLGGMKPNTAVLGFYDL 663 (945)
T ss_pred h---hhhhheeeccC--hhHHHHHHHHhhhcccCCcCCceEEEEeecC
Confidence 2 23322223344 3777777777665 5689999999764
No 205
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=23.24 E-value=1e+03 Score=26.30 Aligned_cols=255 Identities=15% Similarity=0.108 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhcCccccCCch-hh-----hcc-ccCC------CcHHHHHHHHHHH
Q 003770 34 ILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSE-RF-----LQA-VFPP------KSQTVLDTLANLG 100 (796)
Q Consensus 34 l~~i~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~-~~-----~~~-lfp~------~~~~~l~~l~~lg 100 (796)
.-++..+++...+.+.-.+|---|...--|-.|+++.+.-+...+ .. .+. ...+ .....++.+-++|
T Consensus 22 ~~~~vMi~ig~~LiYLai~k~~EPLLLlPigfG~il~NiP~~~~~~g~~~~~~~~~~~~~~~~~~~~~~gg~L~~~~~~g 101 (399)
T TIGR03136 22 ITRLALIIFGFFLAYLGFKRTLEPLIMVPMGLGMMAVNAGVMFLEAGVIGTLHLDPMVSDPSVLVNLMQINFLQPVYNFT 101 (399)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCccccccccccccccccccccccchhccccCCcHHHHHHHHH
Confidence 334455555555555556666678888888888888753221000 00 000 0000 0012344343444
Q ss_pred H------HHHHHHHhhccCchhHHhcchhHHHHH-HHH--HHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhcc
Q 003770 101 L------IFFMFLVGLELDPKSLRQTGKKALGIA-IAG--ISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITA 171 (796)
Q Consensus 101 l------~~~lF~~Gle~d~~~l~~~~~~~~~ia-~~~--~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts 171 (796)
+ .++.+-+|-=+|+.-+..+.|..+..| .++ +.+++..+ ..++.. . .++..+|++-..-.
T Consensus 102 i~~gl~P~LIFlGIGAMtDFgpllanP~~~ll~gaaAQ~GiF~t~~~A----~~lGF~------~-~eAAsIgIIGgADG 170 (399)
T TIGR03136 102 FSNSLVACILFFGIGAMSDISFILARPWASITVALFAEMGTFATLVIG----YYCGLT------P-GEAAAVGTIGGADG 170 (399)
T ss_pred HhcccHHHHHHHhccHHhcchHHHhChHHHHHHHHHHHhhHHHHHHHH----HHcCCC------H-HHhhHHhhcccCCc
Confidence 2 234456777899999999998887743 333 33333222 223211 1 34555555443322
Q ss_pred HHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 003770 172 FPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFKWMAR 251 (796)
Q Consensus 172 ~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~ 251 (796)
+..+. ...|+.+.-+|.+++++ + .+...+-.+-+|+++++..
T Consensus 171 PTaIf---~s~kLAp~Llg~IaVAA-----------Y------------------------sYMaLVPiiqPpimklLtt 212 (399)
T TIGR03136 171 PMVLF---ASLILAKDLFVPISIIA-----------Y------------------------LYLSLTYAGYPYLIKLLVP 212 (399)
T ss_pred cHHHH---HHHhhhhHhHHHHHHHH-----------H------------------------HHHHHHhcccchHHHhhcC
Confidence 21111 11232222222221111 0 0112233344566655532
Q ss_pred Hh------c-CCCCc-chHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 003770 252 QC------H-EGEPV-EETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYF 323 (796)
Q Consensus 252 ~~------~-~~~~~-~e~~~~~~l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF 323 (796)
+. + +.+++ +...+.+-+....+++++. =...+.+|.+.+|-.+.+.+ . +++.+..+.-..++..-+.-
T Consensus 213 kkER~I~M~~~~r~VSk~eKilFpivv~i~~~ll~--P~a~pLig~Lm~GNllrEsG-v-~rLs~taqn~l~nivTifLG 288 (399)
T TIGR03136 213 KKYRGLEVEMEFPDVSQRAKFVFTIVAAMLLCLLL--PVASPLILSFFLGVAIKEAQ-I-EPYQNLLEKTLTYGSTLFLG 288 (399)
T ss_pred HHHHcccCccCCCCCCccchhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhC-c-HHHHHHHHHHHHHHHHHHHH
Confidence 21 1 11122 2223445555555554442 23468999999999998533 3 56655554444344444445
Q ss_pred hhhhccccchhhhhhhhH
Q 003770 324 VSSGLKTNIATIQGLQSW 341 (796)
Q Consensus 324 ~~~G~~~dl~~l~~~~~~ 341 (796)
..+|.+.+-+.+.+..+.
T Consensus 289 l~vG~t~~A~~FL~~~tl 306 (399)
T TIGR03136 289 LVLGVLCEASTLLDPRVS 306 (399)
T ss_pred HHhhhhccHHhhCChHHH
Confidence 678888887666554443
No 206
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=23.17 E-value=3.5e+02 Score=26.34 Aligned_cols=27 Identities=22% Similarity=0.156 Sum_probs=20.8
Q ss_pred CcChHHHHHHHHHHhcCCCeEEEEEEee
Q 003770 634 GRDDREALACGARMAEHPGISFIVIRFL 661 (796)
Q Consensus 634 G~ddreAL~~a~rma~~~~v~ltvv~~~ 661 (796)
.+.|.|++..|++|++ .+.+++++-+-
T Consensus 18 ~~~~~e~l~~A~~l~~-~~~~v~~v~~G 44 (181)
T cd01985 18 NPLDLEAVEAALRLKE-YGGEVTALVIG 44 (181)
T ss_pred CHhhHHHHHHHHHHhh-cCCeEEEEEEC
Confidence 4788999999999987 45567666653
No 207
>PF06939 DUF1286: Protein of unknown function (DUF1286); InterPro: IPR009705 This entry is represented by Sulfolobus virus STSV1, Orf8. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical archaeal proteins of around 120 residues in length. All members of this family seem to be Sulfolobus species specific. The function of this family is unknown.
Probab=22.97 E-value=1.6e+02 Score=26.44 Aligned_cols=57 Identities=23% Similarity=0.308 Sum_probs=30.7
Q ss_pred CCCCcccCCCCCCccHHHH-HHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHhcCcc
Q 003770 15 TSNGVFQGDSPLDFALPLA-ILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPS 72 (796)
Q Consensus 15 ~s~g~~~~~~pl~~~l~~~-l~~i~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~ 72 (796)
+.+|...-..|+++++|.= ...+...+-+..+++ .+....--.+.-.++.|++.||+
T Consensus 53 ~~~g~i~~RTPlTHT~pRSv~WGli~slp~i~~l~-~~~~~~~~~il~~Ll~Gvl~GPS 110 (114)
T PF06939_consen 53 TRYGYIPVRTPLTHTLPRSVLWGLIPSLPLIILLY-YYYGYFNYIILLALLSGVLVGPS 110 (114)
T ss_pred cCCCcceecCCCccCcchhhHHHHHHHHHHHHHHH-HHhcchHHHHHHHHHhhhccchH
Confidence 4455555688999998852 222222221111222 22222334456678899999996
No 208
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=22.47 E-value=9.1e+02 Score=28.74 Aligned_cols=29 Identities=10% Similarity=0.122 Sum_probs=16.0
Q ss_pred hHHHHHHHHHhhcCCCCChhHHHHHHHHHHH
Q 003770 284 HAMFGAFVVGVLVPKEGPFANALVEKVEDLV 314 (796)
Q Consensus 284 ~~~lgafvaGl~l~~~~~~~~~l~~kl~~~~ 314 (796)
..++-+.+++..+. ....+++..|.++++
T Consensus 92 Pavivaifs~~~in--~gld~WF~~kt~~il 120 (712)
T COG5000 92 PAVIVAIFSAQFIN--LGLDRWFSKKTQTIL 120 (712)
T ss_pred HHHHHHHHHHHHHh--hhHHHHhhhhHHHHH
Confidence 45566666677775 334445555544444
No 209
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=22.23 E-value=25 Score=36.90 Aligned_cols=130 Identities=20% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhh
Q 003770 315 SGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIG 394 (796)
Q Consensus 315 ~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~~~l~l~~~~ 394 (796)
++++=++.|.-+|..+|+..+.....-.+.....=.+ +..+++.+...|+..+|+..+|.+=+.-|-.++.+.+..
T Consensus 83 ~~i~PllIFmGvGAmTDFgpllanPktllLGaAAQ~G----IF~t~~~A~~lgf~~~eAasIgIIGGADGPTaIy~t~~L 158 (375)
T COG1883 83 SGIFPLLIFMGVGAMTDFGPLLANPKTLLLGAAAQFG----IFATVFGALALGFTPKEAASIGIIGGADGPTAIYLTNKL 158 (375)
T ss_pred cCcccHHHHhccchhcccchhhcCcHHHHhhhHHHhc----hHHHHHHHHHhCCCHhhhhheeeeccCCCCceEEecccc
Q ss_pred hcc--CCCChhHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhccccccccccCCCCCcceEEEEe
Q 003770 395 KDR--KVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACF 458 (796)
Q Consensus 395 ~~~--~~i~~~~~~~lvl~~lv~t~i~~pl~~~l~~~~~~~~~~~~~~~~i~~~~~~~elriLv~v 458 (796)
-.. +.+.-..|+-| -+.-++-||+.+.+--+++|.. |.+ |-.+-.+..||+-|+
T Consensus 159 AP~Ll~~iAvAAYSYM----ALVPiIQPpimkaLTt~~ERkI-----rM~-qlR~Vsk~EkIlFPi 214 (375)
T COG1883 159 APELLGAIAVAAYSYM----ALVPIIQPPIMKALTTKEERKI-----RMT-QLRTVSKREKILFPI 214 (375)
T ss_pred CHHHHHHHHHHHHHHH----HHhhhcccHHHHHhcCHHHHHh-----hhh-ccccccchhhhhhhH
No 210
>PRK01821 hypothetical protein; Provisional
Probab=22.22 E-value=6.6e+02 Score=23.56 Aligned_cols=97 Identities=13% Similarity=0.001 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCh---hHHHHH--HHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHH
Q 003770 32 LAILQICLVILLTRGLAFILRPLRQPR---VIAEIT--GGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMF 106 (796)
Q Consensus 32 ~~l~~i~lil~~~~~~~~ll~~l~~P~---iv~~il--aGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF 106 (796)
.++.|+.+++.+..+...+.+-+++|- ++|.++ ..+..|..-..++. ...--.+.++++.|+==
T Consensus 10 ~~l~~l~ill~~~~~Ge~i~~~l~lpiPGsViGmlLLf~~L~~~~vk~~~v~-----------~~a~~LL~~m~LfFVPa 78 (133)
T PRK01821 10 QYLRAFVLIYACLYAGIFIASLLPITIPGSIIGMLILFVLLALQILPAKWVK-----------PGCSLLIRYMALLFVPI 78 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhCCcCHHHHH-----------HHHHHHHHHHHHHHhhh
Confidence 567788888888877777777776543 233322 22222311110000 00112234444444444
Q ss_pred HHhhccCchhHHhcchhHHHHHHHHHHHHHHHH
Q 003770 107 LVGLELDPKSLRQTGKKALGIAIAGISLPFALG 139 (796)
Q Consensus 107 ~~Gle~d~~~l~~~~~~~~~ia~~~~~i~~~~~ 139 (796)
..|+=...+.+++++.+.+..-+.+.++.++++
T Consensus 79 ~VGim~~~~ll~~~~~~il~~ivvST~lvl~vt 111 (133)
T PRK01821 79 GVGVMQYYDLLRAQFGPIVVSCIVSTLVVLLVV 111 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556656666666666666555555555554443
No 211
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=22.02 E-value=1.6e+02 Score=29.48 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=19.2
Q ss_pred EEEEeccCCcChHHHHHHHHH
Q 003770 626 TITVLFFGGRDDREALACGAR 646 (796)
Q Consensus 626 ~i~~~f~GG~ddreAL~~a~r 646 (796)
++++.|.||.|.--|+..+.+
T Consensus 1 kv~v~~SGGkDS~~al~~a~~ 21 (194)
T cd01994 1 KVVALISGGKDSCYALYRALE 21 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHH
Confidence 478999999999999999988
No 212
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=22.00 E-value=2.6e+02 Score=24.83 Aligned_cols=38 Identities=18% Similarity=0.383 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHh
Q 003770 131 GISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALS 168 (796)
Q Consensus 131 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls 168 (796)
++++|.++|..++.++...++.+.......+++|++..
T Consensus 51 ~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G 88 (100)
T TIGR02230 51 SVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIG 88 (100)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Confidence 45667777887777776655433323334555565544
No 213
>PRK01658 holin-like protein; Validated
Probab=21.97 E-value=6.3e+02 Score=23.25 Aligned_cols=99 Identities=18% Similarity=0.107 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCh---hHHHHH--HHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHH
Q 003770 31 PLAILQICLVILLTRGLAFILRPLRQPR---VIAEIT--GGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFM 105 (796)
Q Consensus 31 ~~~l~~i~lil~~~~~~~~ll~~l~~P~---iv~~il--aGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~l 105 (796)
..++.|+.+++.+..+...+.+-+++|- ++|.++ ..+..+..-..+++ ...--.+.++++.|+=
T Consensus 4 ~~~l~~l~il~~~~~~G~~i~~~l~lpiPGsViGmlLL~~~L~~~~ik~~~v~-----------~~a~~Ll~~m~llFVP 72 (122)
T PRK01658 4 VKLLVQIALLYVFALVGTWIQEQLHLPIPGSIIGIFLLLLLLSFKILKLKWIE-----------LGAETLLAELPLFFIP 72 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhCCcCHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 3567888888888877777777666543 344332 22222221111111 0111233444454444
Q ss_pred HHHhhccCchhHHhcchhHHHHHHHHHHHHHHHHH
Q 003770 106 FLVGLELDPKSLRQTGKKALGIAIAGISLPFALGI 140 (796)
Q Consensus 106 F~~Gle~d~~~l~~~~~~~~~ia~~~~~i~~~~~~ 140 (796)
-..|+=...+.+++++-+.+...+.+.++.++++.
T Consensus 73 a~VGi~~~~~ll~~~~~~il~~ivvsT~l~l~vtg 107 (122)
T PRK01658 73 SAVGVMNYGDFLSSKGISLFLVVVISTFVVMIVTG 107 (122)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666777777776666666666665555443
No 214
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=21.65 E-value=3.2e+02 Score=30.10 Aligned_cols=89 Identities=12% Similarity=0.095 Sum_probs=59.6
Q ss_pred cchHHHHHHHhhhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCcccccc-CCc-ccc---------ccchhH
Q 003770 522 PNHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRL-DGS-LET---------TRSDFR 590 (796)
Q Consensus 522 ~~~i~~af~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~-~g~-~~~---------~~~~~~ 590 (796)
.+++.+-++. +++++..|-.+...+ ..+...+++.|++.++..||.-..+.-.. .|. ++. +...+.
T Consensus 12 ~~~~~~lL~~-A~~~~yAVgAfNv~n--~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 88 (357)
T TIGR01520 12 GDDVHKLFQY-AKENNFAIPAINCTS--SSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGA 88 (357)
T ss_pred HHHHHHHHHH-HHHCCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHH
Confidence 3445544443 444555555666665 58899999999999999999887654322 111 110 112266
Q ss_pred HHHHHHhhcCCCceEEEecCCCC
Q 003770 591 WVNQRVLKHAPCSVGILIDRGLG 613 (796)
Q Consensus 591 ~vn~~vl~~ApcsVgIlvdrg~~ 613 (796)
...+...+++++||++=.|+|..
T Consensus 89 ~~v~~~Ae~a~VPValHLDHg~~ 111 (357)
T TIGR01520 89 HHVHSIAEHYGVPVVLHTDHCAK 111 (357)
T ss_pred HHHHHHHHHCCCCEEEECCCCCC
Confidence 67788999999999999999854
No 215
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=21.24 E-value=3e+02 Score=28.92 Aligned_cols=33 Identities=30% Similarity=0.365 Sum_probs=26.7
Q ss_pred EEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEeee
Q 003770 626 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLL 662 (796)
Q Consensus 626 ~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~ 662 (796)
.+++.|.||+|+-..|.++.+.... +.|+.+-+
T Consensus 41 ~~~~~~S~Gkds~V~l~L~~k~~~~----~~vif~DT 73 (261)
T COG0175 41 PVVVSFSGGKDSTVLLHLAAKAFPD----FPVIFLDT 73 (261)
T ss_pred CeEEEecCchhHHHHHHHHHHhcCC----CcEEEEeC
Confidence 3789999999999999988888776 66666654
No 216
>PRK09777 fecD iron-dicitrate transporter subunit FecD; Reviewed
Probab=21.24 E-value=1.1e+03 Score=25.67 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=32.8
Q ss_pred HhcccCCChhHHHHHHHHhcCccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHH
Q 003770 50 ILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFL 107 (796)
Q Consensus 50 ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~~lF~ 107 (796)
+...+|+|+++.-+++|..+|-++.-...-..|- +-+.+.--.+.-+.+|.++.++.
T Consensus 46 ii~~~RlPR~l~a~l~G~~LavsG~~lQ~l~rNp-LA~P~iLGissGA~l~~~l~~~~ 102 (318)
T PRK09777 46 VLMEYRLPRLLLALFVGAALAVSGVLVQGIVRNP-LASPDILGVNHAASLASVGALLL 102 (318)
T ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCcHhhHHHHHHHHHHHHHHH
Confidence 5667899999999999999985442111101111 11223333455666776665544
No 217
>PRK04148 hypothetical protein; Provisional
Probab=21.15 E-value=1.4e+02 Score=28.04 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=28.6
Q ss_pred eEEecCCCChHHHHHHHHHhcCccEEEecCcccc
Q 003770 543 MTAISSMSDMHEDICTTAESKRAAIIILPFHKHQ 576 (796)
Q Consensus 543 ~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~ 576 (796)
..++-|...|+..|.++|++.++|++|-|..+..
T Consensus 81 iysirpp~el~~~~~~la~~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 81 IYSIRPPRDLQPFILELAKKINVPLIIKPLSGEE 114 (134)
T ss_pred EEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 3355577899999999999999999999996553
No 218
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=20.90 E-value=2.2e+02 Score=26.97 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEecC
Q 003770 552 MHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDR 610 (796)
Q Consensus 552 m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgIlvdr 610 (796)
-.+.+.++.++.+++.||+|+..+ .+|.........+.+.+++-++-+++| +++|.
T Consensus 41 ~~~~l~~li~~~~~~~vVVGlP~~--m~g~~~~~~~~~~~f~~~L~~r~~lpv-~l~DE 96 (141)
T COG0816 41 DFNALLKLVKEYQVDTVVVGLPLN--MDGTEGPRAELARKFAERLKKRFNLPV-VLWDE 96 (141)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcC--CCCCcchhHHHHHHHHHHHHHhcCCCE-EEEcC
Confidence 457899999999999999999764 344443333346778888888888998 56776
No 219
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=20.63 E-value=1.7e+02 Score=31.59 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=32.9
Q ss_pred HHHHHHHHhhcCCCCceEEEEEEe---cChHHHHHHHHhcc------CCCEEEEccCC
Q 003770 683 EEVLSEFKLKTSRNGSVRYEERLV---RNTAETIAVIREVS------RCNLLLVGRMP 731 (796)
Q Consensus 683 ~~~~~~~~~~~~~~~~v~~~e~~v---~~~~~~~~~l~~~~------~~DL~iVGr~~ 731 (796)
.++++..+.+... -++.+-...| ....++..+|+.++ +||++|++||+
T Consensus 29 ~D~~~~~~~r~~~-~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGG 85 (319)
T PF02601_consen 29 QDFLRTLKRRNPI-VEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGG 85 (319)
T ss_pred HHHHHHHHHhCCC-cEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCC
Confidence 4566666665532 3355555556 55677888888775 28999999998
No 220
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=20.50 E-value=2.3e+02 Score=26.31 Aligned_cols=60 Identities=15% Similarity=0.079 Sum_probs=43.2
Q ss_pred CChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEecCCC
Q 003770 550 SDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGL 612 (796)
Q Consensus 550 ~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgIlvdrg~ 612 (796)
....+.+.++.++.+++.||+|...+ .||.........+.+.+++-++-+.+|- ++|.-+
T Consensus 34 ~~~~~~l~~~i~~~~~~~iVvGlP~~--~dG~~~~~a~~v~~f~~~L~~~~~~~v~-~~DEr~ 93 (130)
T TIGR00250 34 EPDWSRIEELLKEWTPDKIVVGLPLN--MDGTEGPLTERAQKFANRLEGRFGVPVV-LWDERL 93 (130)
T ss_pred cHHHHHHHHHHHHcCCCEEEEeccCC--CCcCcCHHHHHHHHHHHHHHHHhCCCEE-EEcCCc
Confidence 45568899999999999999998775 3555433334567777777666688874 577643
No 221
>KOG3180 consensus Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=20.33 E-value=2.1e+02 Score=28.48 Aligned_cols=92 Identities=15% Similarity=0.166 Sum_probs=49.9
Q ss_pred CcChHHHHHHHHHHhcCCCeEEEE-EEeeecccccCCccccCCcCccccHHHHHHHHHhhcCCCCceEEEEEEec---Ch
Q 003770 634 GRDDREALACGARMAEHPGISFIV-IRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLVR---NT 709 (796)
Q Consensus 634 G~ddreAL~~a~rma~~~~v~ltv-v~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~~~e~~v~---~~ 709 (796)
.|-|+-|++-|.||-+..-++=++ +..-+.. ..+.+...-++ +.++-...|..-+ .+
T Consensus 39 NPF~eIAvEEAvrlKEk~l~eeviavs~G~aq-----------------s~~ilRt~LA~--Gadr~~hv~~~~~~~lep 99 (254)
T KOG3180|consen 39 NPFCEIAVEEAVRLKEKKLAEEVIAVSIGPAQ-----------------SQEILRTALAK--GADRGVHVEVVGAEELEP 99 (254)
T ss_pred CchHHHHHHHHHhHhhhhhhheEEEEecCccc-----------------hHHHHHHHHhc--cCCceeEEecCchhhccc
Confidence 366788899999998754443322 2221111 12333333333 2233333332211 12
Q ss_pred HHHHHHHHhc---cCCCEEEEccCC-------CchhhcccccCCC
Q 003770 710 AETIAVIREV---SRCNLLLVGRMP-------DGELALALSTRSD 744 (796)
Q Consensus 710 ~~~~~~l~~~---~~~DL~iVGr~~-------~~~~~~gl~~w~e 744 (796)
-.+..+++++ ++.||+++|+.. ..+|+.||-+|-+
T Consensus 100 l~vAKiLk~~vekek~~lVllGKQAIDDD~nqTgqmlA~lL~WPQ 144 (254)
T KOG3180|consen 100 LHVAKILKKLVEKEKSDLVLLGKQAIDDDCNQTGQMLAALLGWPQ 144 (254)
T ss_pred hHHHHHHHHHHHhhcCCEEEEcccccccchhhhHHHHHHHhCCcc
Confidence 2333445444 339999999997 2678899999965
No 222
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=20.08 E-value=3e+02 Score=28.71 Aligned_cols=38 Identities=13% Similarity=0.258 Sum_probs=29.8
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhcCC--CeEEEEEEee
Q 003770 624 SYTITVLFFGGRDDREALACGARMAEHP--GISFIVIRFL 661 (796)
Q Consensus 624 ~~~i~~~f~GG~ddreAL~~a~rma~~~--~v~ltvv~~~ 661 (796)
..+|++.+.||+|.--.|.+..++.++. +.++..+++-
T Consensus 29 ~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd 68 (258)
T PRK10696 29 GDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLD 68 (258)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEec
Confidence 3599999999999988888888877543 4567777764
Done!