Query 003770
Match_columns 796
No_of_seqs 365 out of 2120
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 03:28:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003770.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003770hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.9 8.1E-24 2.8E-28 228.9 7.9 300 92-425 59-382 (388)
2 3mt0_A Uncharacterized protein 99.7 5.6E-16 1.9E-20 164.8 21.4 263 452-772 8-278 (290)
3 3loq_A Universal stress protei 99.7 6.1E-16 2.1E-20 164.9 15.3 264 452-771 23-291 (294)
4 3olq_A Universal stress protei 99.6 2E-15 6.9E-20 162.6 16.1 282 452-772 8-307 (319)
5 3cis_A Uncharacterized protein 99.6 2.8E-15 9.6E-20 160.9 16.8 276 451-770 19-306 (309)
6 3ab8_A Putative uncharacterize 99.6 4E-15 1.4E-19 156.2 16.0 232 453-729 2-242 (268)
7 3s3t_A Nucleotide-binding prot 99.1 3.2E-10 1.1E-14 106.8 9.3 135 452-606 6-144 (146)
8 3fdx_A Putative filament prote 99.0 1.1E-09 3.6E-14 102.8 10.3 135 452-606 2-141 (143)
9 1mjh_A Protein (ATP-binding do 99.0 3.6E-09 1.2E-13 101.5 13.8 141 452-607 6-157 (162)
10 3hgm_A Universal stress protei 99.0 1.4E-09 4.8E-14 102.4 8.8 140 452-606 3-146 (147)
11 3dlo_A Universal stress protei 98.9 4E-09 1.4E-13 100.8 11.4 129 451-606 24-153 (155)
12 3fg9_A Protein of universal st 98.9 7.2E-10 2.5E-14 105.8 5.8 136 451-606 15-154 (156)
13 2dum_A Hypothetical protein PH 98.9 4.3E-09 1.5E-13 101.9 11.2 144 452-608 6-155 (170)
14 1tq8_A Hypothetical protein RV 98.9 2.8E-09 9.7E-14 102.8 9.7 138 450-607 16-156 (163)
15 2z08_A Universal stress protei 98.9 2.5E-09 8.7E-14 99.6 8.0 132 452-606 3-135 (137)
16 3idf_A USP-like protein; unive 98.9 7.8E-09 2.7E-13 96.2 10.1 132 452-606 2-136 (138)
17 3tnj_A Universal stress protei 98.8 1.7E-09 5.7E-14 102.4 5.1 138 452-607 7-145 (150)
18 2gm3_A Unknown protein; AT3G01 98.8 1.6E-08 5.5E-13 98.4 11.6 143 452-608 6-162 (175)
19 1jmv_A USPA, universal stress 98.8 1.4E-08 4.8E-13 94.8 10.1 132 452-608 3-137 (141)
20 1q77_A Hypothetical protein AQ 98.6 2.1E-07 7.1E-12 86.5 9.8 129 452-606 5-136 (138)
21 3mt0_A Uncharacterized protein 98.5 2E-07 6.8E-12 98.5 8.1 137 450-610 133-277 (290)
22 3olq_A Universal stress protei 98.3 2.4E-07 8.4E-12 99.1 4.4 145 451-612 156-308 (319)
23 3loq_A Universal stress protei 98.3 1.4E-06 4.8E-11 92.1 9.7 120 450-607 169-288 (294)
24 3s3t_A Nucleotide-binding prot 98.2 2.6E-06 9E-11 79.6 8.3 133 623-768 4-145 (146)
25 3dlo_A Universal stress protei 98.2 1.5E-06 5.3E-11 82.6 5.6 129 623-769 23-155 (155)
26 3idf_A USP-like protein; unive 98.1 2.1E-05 7.1E-10 72.7 12.1 130 625-768 2-137 (138)
27 3cis_A Uncharacterized protein 98.1 1.2E-05 4.3E-10 85.4 11.5 132 451-607 171-304 (309)
28 3hgm_A Universal stress protei 98.1 6.2E-06 2.1E-10 77.1 7.7 132 624-768 2-147 (147)
29 1tq8_A Hypothetical protein RV 98.0 1.8E-05 6.3E-10 75.8 9.9 137 622-771 15-159 (163)
30 1mjh_A Protein (ATP-binding do 98.0 1.9E-05 6.6E-10 75.1 9.4 135 623-770 4-159 (162)
31 2dum_A Hypothetical protein PH 98.0 1.7E-05 5.7E-10 76.3 8.7 136 624-771 5-157 (170)
32 3tnj_A Universal stress protei 97.9 5E-06 1.7E-10 78.1 4.2 134 623-771 5-148 (150)
33 2z08_A Universal stress protei 97.9 2.3E-05 7.9E-10 72.4 8.5 131 624-768 2-136 (137)
34 3fdx_A Putative filament prote 97.8 2.5E-05 8.4E-10 72.6 7.2 130 625-768 2-142 (143)
35 3fg9_A Protein of universal st 97.8 1.6E-05 5.6E-10 75.2 5.8 133 622-768 13-155 (156)
36 1q77_A Hypothetical protein AQ 97.7 4.4E-05 1.5E-09 70.5 7.1 40 623-662 3-43 (138)
37 3ab8_A Putative uncharacterize 97.7 3.9E-05 1.3E-09 79.6 6.9 113 452-607 155-267 (268)
38 3zux_A Transporter, ASBTNM; tr 97.7 0.048 1.6E-06 58.2 30.7 109 96-216 44-156 (332)
39 1jmv_A USPA, universal stress 97.6 0.00023 7.8E-09 65.8 9.5 132 624-770 2-138 (141)
40 2gm3_A Unknown protein; AT3G01 97.5 0.0005 1.7E-08 66.2 11.3 136 623-771 4-164 (175)
41 3g40_A Na-K-CL cotransporter; 95.5 0.4 1.4E-05 49.1 16.4 217 453-731 22-254 (294)
42 3zux_A Transporter, ASBTNM; tr 73.1 48 0.0016 34.7 14.3 126 290-427 28-155 (332)
43 1efp_B ETF, protein (electron 67.8 11 0.00039 37.9 7.6 90 633-742 35-141 (252)
44 1zun_A Sulfate adenylyltransfe 66.0 10 0.00035 39.9 7.1 56 625-693 47-102 (325)
45 1efv_B Electron transfer flavo 65.5 11 0.00037 38.2 6.9 92 631-742 36-144 (255)
46 1o97_C Electron transferring f 62.1 13 0.00045 37.8 6.8 94 630-742 32-140 (264)
47 1iv0_A Hypothetical protein; r 61.5 17 0.00057 30.9 6.3 56 551-610 38-93 (98)
48 2l0e_A Sodium/hydrogen exchang 55.7 3.2 0.00011 27.7 0.6 26 159-184 5-30 (33)
49 1ni5_A Putative cell cycle pro 43.1 30 0.001 37.8 6.3 58 625-693 14-72 (433)
50 2wsi_A FAD synthetase; transfe 42.6 81 0.0028 32.5 9.2 90 625-731 54-167 (306)
51 2k3c_A TMIX peptide; membrane 41.3 0.49 1.7E-05 31.8 -5.2 27 272-298 4-30 (33)
52 1wy5_A TILS, hypothetical UPF0 38.6 30 0.001 35.9 5.2 58 625-693 25-83 (317)
53 3a2k_A TRNA(Ile)-lysidine synt 36.2 30 0.001 38.2 4.9 60 624-693 18-77 (464)
54 1nu0_A Hypothetical protein YQ 36.2 49 0.0017 29.9 5.5 57 551-610 40-96 (138)
55 3fwk_A FMN adenylyltransferase 35.6 1.2E+02 0.004 31.4 8.8 90 625-731 59-170 (308)
56 2oq2_A Phosphoadenosine phosph 31.8 43 0.0015 33.7 4.9 56 625-694 42-97 (261)
57 3gxq_A Putative regulator of t 26.9 40 0.0014 23.5 2.4 25 540-566 12-36 (54)
58 2htg_A NHE-1, NHE1 isoform of 25.6 2.3 7.9E-05 27.2 -3.7 25 185-209 2-26 (28)
59 1sur_A PAPS reductase; assimil 25.1 69 0.0023 30.9 4.9 52 625-693 45-96 (215)
60 4b4t_W RPN10, 26S proteasome r 23.7 1.4E+02 0.0047 30.1 6.9 37 624-662 107-146 (268)
61 2k4m_A TR8_protein, UPF0146 pr 23.5 1.2E+02 0.004 27.8 5.5 36 541-576 91-126 (153)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.89 E-value=8.1e-24 Score=228.88 Aligned_cols=300 Identities=19% Similarity=0.218 Sum_probs=213.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhH----Hhcch--hHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHH
Q 003770 92 VLDTLANLGLIFFMFLVGLELDPKSL----RQTGK--KALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV 165 (796)
Q Consensus 92 ~l~~l~~lgl~~~lF~~Gle~d~~~l----~~~~~--~~~~ia~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~ 165 (796)
..+.+.+-.+.++||.+|+|+|.+.+ ++.+| .....++.|+++|++++. .+.. +. ..+.....
T Consensus 59 l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~----~~~~----~~---~~~~~gw~ 127 (388)
T 1zcd_A 59 MLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYL----AFNY----AD---PITREGWA 127 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHG----GGCC----SS---TTHHHHTS
T ss_pred HHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHH----HHhc----CC---hhhhhhhH
Confidence 46678888899999999999998877 55544 378889999999998742 1211 11 22345555
Q ss_pred HHhhccHHHHHHHHHhcC-ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHhhHH
Q 003770 166 ALSITAFPVLARILAELK-LLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPP 244 (796)
Q Consensus 166 ~ls~Ts~~vv~~iL~el~-ll~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~ 244 (796)
+.+.|+.+....++..++ ..++..++.+++.+++||+.+|++++++.. ++ ....+... .+++.++.
T Consensus 128 ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~---~~~~~l~~-~~~~~~~~------ 194 (388)
T 1zcd_A 128 IPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---ND---LSMASLGV-AAVAIAVL------ 194 (388)
T ss_dssp SSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CC---CCHHHHHH-HHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CC---ccHHHHHH-HHHHHHHH------
Confidence 667799999999999874 466777899999999999999999997743 22 11222111 11111111
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCC----ChhHHHHHHHHHHHHHHHHH
Q 003770 245 TFKWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEG----PFANALVEKVEDLVSGIFLP 320 (796)
Q Consensus 245 ~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgafvaGl~l~~~~----~~~~~l~~kl~~~~~~~~~P 320 (796)
+..+|.. .+....+..+ .+ .+.+.++..|+|+++|+|++|+++|+.+ +..+++++++++++..+++|
T Consensus 195 ---~~l~r~~----v~~~~~y~~l-gl-~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilP 265 (388)
T 1zcd_A 195 ---AVLNLCG----ARRTGVYILV-GV-VLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILP 265 (388)
T ss_dssp ---HHHHHTT----CCCTHHHHHH-HH-HHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHH
T ss_pred ---HHHHHhc----chhHHHHHHH-HH-HHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence 2223321 1223233333 22 4456779999999999999999999743 46789999999999999999
Q ss_pred HH-HhhhhccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhhhhHHHHHH
Q 003770 321 LY-FVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILMNTKGLVELI 389 (796)
Q Consensus 321 lf-F~~~G~~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~----------~~~~~e~~~lgl~l~~kG~~~l~ 389 (796)
+| |+..|.++|......... .....+++..+++|++|++..++.. |++|+|...+|++++.+++++++
T Consensus 266 lFaFanaGv~l~~~~~~~l~~-~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL~ 344 (388)
T 1zcd_A 266 LFAFANAGVSLQGVTLDGLTS-ILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIF 344 (388)
T ss_dssp HHHHHHCCCCCSSSCCCTHHH-HSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHHH
T ss_pred HHHHHhcCeeecccchhhccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHHH
Confidence 99 999999999743221111 1122444566899999966666655 89999999999999999999999
Q ss_pred HHHhhhccCC--CChhHHHHHHHHHHHHHHhHHHHHHH
Q 003770 390 VLNIGKDRKV--LNDQVFAIMILMAVVTTFMTTPLVMA 425 (796)
Q Consensus 390 l~~~~~~~~~--i~~~~~~~lvl~~lv~t~i~~pl~~~ 425 (796)
+++.+++.+. +.++.+..+++++++++.+.+.+.++
T Consensus 345 Ia~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~ 382 (388)
T 1zcd_A 345 IASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRV 382 (388)
T ss_dssp HHHHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTT
T ss_pred HHHHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998876 35667888878777766666555543
No 2
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.70 E-value=5.6e-16 Score=164.85 Aligned_cols=263 Identities=12% Similarity=0.085 Sum_probs=175.2
Q ss_pred ceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHH
Q 003770 452 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEA 531 (796)
Q Consensus 452 lriLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 531 (796)
.+||+|++++++....++.+..++.. ...+++++|+++ + . . .++.++.+.+
T Consensus 8 ~~ILv~~D~s~~s~~al~~A~~la~~---~~a~l~ll~v~~-~---------~---------------~-~~~~l~~~~~ 58 (290)
T 3mt0_A 8 RSILVVIEPDQLEGLALKRAQLIAGV---TQSHLHLLVCEK-R---------R---------------D-HSAALNDLAQ 58 (290)
T ss_dssp CEEEEECCSSCSCCHHHHHHHHHHHH---HCCEEEEEEECS-S---------S---------------C-CHHHHHHHHH
T ss_pred ceEEEEeCCCccchHHHHHHHHHHHh---cCCeEEEEEeeC-c---------H---------------H-HHHHHHHHHH
Confidence 58999999999999999999998854 567899999986 1 0 0 1233333333
Q ss_pred hhhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEecCC
Q 003770 532 FQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRG 611 (796)
Q Consensus 532 ~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgIlvdrg 611 (796)
..+..++.++.....+ .+..+.|++.|++.++|+||||+|++...++.+ +|++.+++++++||||.+ +..+
T Consensus 59 ~~~~~~~~~~~~~~~~--g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~------~gs~~~~vl~~~~~PVlv-v~~~ 129 (290)
T 3mt0_A 59 ELREEGYSVSTNQAWK--DSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAI------LTPDDWKLLRFAPCPVLM-TKTA 129 (290)
T ss_dssp HHHHTTCCEEEEEECS--SSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTS------CCHHHHHHHHHCSSCEEE-ECCC
T ss_pred HHhhCCCeEEEEEEeC--CCHHHHHHHHHHhcCCCEEEEecccCCchhhcc------cCHHHHHHHhcCCCCEEE-ecCC
Confidence 3334678888777654 589999999999999999999999876544433 788999999999999866 4432
Q ss_pred CCCCcccccCCcceEEEEeccCCcC-------hHHHHHHHHHHhcCCCeEEEEEEeeecccccCCccc-cCCcCccccHH
Q 003770 612 LGGTTQVSASNVSYTITVLFFGGRD-------DREALACGARMAEHPGISFIVIRFLLAADAIGNTVS-VDMAGNASMDE 683 (796)
Q Consensus 612 ~~~~~~~~~~~~~~~i~~~f~GG~d-------dreAL~~a~rma~~~~v~ltvv~~~~~~~~~~~~~~-~~~~~~~~~d~ 683 (796)
.. . ..+||++++.|.++ .+.|+++|.++|+..+.+++++++.+.......... ...+..++..+
T Consensus 130 ~~-------~-~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~ 201 (290)
T 3mt0_A 130 RP-------W-TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYR 201 (290)
T ss_dssp SC-------S-TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHHH
T ss_pred CC-------C-CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHHH
Confidence 21 1 46799999999998 799999999999999999999999864321100000 00000111223
Q ss_pred HHHHHHHhhcCCCCceEEEEEEecChHHHHHHHHhccCCCEEEEccCCCchhhcccccCCCCCccccchhhhccCCCCce
Q 003770 684 EVLSEFKLKTSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTA 763 (796)
Q Consensus 684 ~~~~~~~~~~~~~~~v~~~e~~v~~~~~~~~~l~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~ 763 (796)
+.++++..++.. ..+.+ ....++..+.+....+-.++||+++|+++ .+|+.+| =+|-+.+-+...- . .
T Consensus 202 ~~l~~~~~~~g~-~~~~~-~v~~g~~~~~I~~~a~~~~~dLiVmG~~g----~~~~~~~----~~Gsv~~~vl~~~-~-~ 269 (290)
T 3mt0_A 202 EACRTFQAEYGF-SDEQL-HIEEGPADVLIPRTAQKLDAVVTVIGTVA----RTGLSGA----LIGNTAEVVLDTL-E-S 269 (290)
T ss_dssp HHHHHHHHHHTC-CTTTE-EEEESCHHHHHHHHHHHHTCSEEEEECCS----SCCGGGC----CSCHHHHHHHTTC-S-S
T ss_pred HHHHHHHHHcCC-CcceE-EEeccCHHHHHHHHHHhcCCCEEEECCCC----CcCCcce----ecchHHHHHHhcC-C-C
Confidence 455566655422 11111 22234554433222222239999999998 4455554 3788887777532 2 6
Q ss_pred eEEEEeeec
Q 003770 764 SVLIIQQYS 772 (796)
Q Consensus 764 SvLvvqq~~ 772 (796)
+||||..+.
T Consensus 270 pVLvv~~~~ 278 (290)
T 3mt0_A 270 DVLVLKPDD 278 (290)
T ss_dssp EEEEECCHH
T ss_pred CEEEECCCC
Confidence 999997543
No 3
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.66 E-value=6.1e-16 Score=164.87 Aligned_cols=264 Identities=11% Similarity=0.085 Sum_probs=170.1
Q ss_pred ceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHH
Q 003770 452 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEA 531 (796)
Q Consensus 452 lriLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 531 (796)
.+||+|++++++...+++.+..++.. ...+++++|+++.+...... . . .......++ ..+..++.++.+.+
T Consensus 23 ~~ILv~vD~s~~s~~al~~A~~lA~~---~~a~l~ll~v~~~~~~~~~~---~-~-~~~~~~~~~-~~~~~~~~l~~~~~ 93 (294)
T 3loq_A 23 NAMLLPTDLSENSFKVLEYLGDFKKV---GVEEIGVLFVINLTKLSTVS---G-G-IDIDHYIDE-MSEKAEEVLPEVAQ 93 (294)
T ss_dssp CEEEEECCSCTGGGGGGGGHHHHHHT---TCCEEEEECCEECTTC---------C-CCTTHHHHH-HHHHHHHHHHHHHH
T ss_pred ccEEEecCCCHHHHHHHHHHHHHHhh---cCCEEEEEEEecCccccccc---c-c-ccHHHHHHH-HHHHHHHHHHHHHH
Confidence 58999999999999999999988854 67889999999865422110 0 0 000000000 00223445555555
Q ss_pred hhhccCeEEEE-eEE-ecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEec
Q 003770 532 FQQLSRVSVRP-MTA-ISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILID 609 (796)
Q Consensus 532 ~~~~~~v~v~~-~~~-vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgIlvd 609 (796)
..+..+++++. .+. .+ +..+.| .|++.++|+||||.|++.... +..+|++.++|++++||||.| |.
T Consensus 94 ~~~~~g~~~~~~~v~~~g---~~~~~I--~a~~~~~DliV~G~~g~~~~~------~~~~Gs~~~~vl~~~~~PVlv-v~ 161 (294)
T 3loq_A 94 KIEAAGIKAEVIKPFPAG---DPVVEI--IKASENYSFIAMGSRGASKFK------KILLGSVSEGVLHDSKVPVYI-FK 161 (294)
T ss_dssp HHHHTTCEEEECSSCCEE---CHHHHH--HHHHTTSSEEEEECCCCCHHH------HHHHCCHHHHHHHHCSSCEEE-EC
T ss_pred HHHHcCCCcceeEeeccC---ChhHhe--eeccCCCCEEEEcCCCCcccc------ceeeccHHHHHHhcCCCCEEE-ec
Confidence 55456788887 444 43 889999 999999999999998764332 223678899999999999866 44
Q ss_pred CCCCCCcccccCCcceEEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEeeecccccCCccccCCcCccccHHHHHHHH
Q 003770 610 RGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEF 689 (796)
Q Consensus 610 rg~~~~~~~~~~~~~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 689 (796)
++.. .....+||++++.|.++++.|+++|.++|+..+.+++++++.+... .++.++++
T Consensus 162 ~~~~------~~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~----------------~~~~l~~~ 219 (294)
T 3loq_A 162 HDMV------VNSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD----------------KTADLRVM 219 (294)
T ss_dssp CCTT------TTCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC----------------CHHHHHHH
T ss_pred Cccc------cCccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch----------------HHHHHHHH
Confidence 4321 1134679999999999999999999999999999999999975321 12233333
Q ss_pred HhhcCC-CCceEEEEEEecChHHHHHHHHhcc--CCCEEEEccCCCchhhcccccCCCCCccccchhhhccCCCCceeEE
Q 003770 690 KLKTSR-NGSVRYEERLVRNTAETIAVIREVS--RCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVL 766 (796)
Q Consensus 690 ~~~~~~-~~~v~~~e~~v~~~~~~~~~l~~~~--~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~SvL 766 (796)
+..... +-.+.+ .+..|.-...+++... ++||+++|+++ -+++.+| -+|-+.+-+... .. .+||
T Consensus 220 ~~~l~~~~~~~~~---~~~~g~~~~~I~~~a~~~~~dLlV~G~~~----~~~~~~~----~~Gs~~~~vl~~-~~-~pvL 286 (294)
T 3loq_A 220 EEVIGAEGIEVHV---HIESGTPHKAILAKREEINATTIFMGSRG----AGSVMTM----ILGSTSESVIRR-SP-VPVF 286 (294)
T ss_dssp HHHHHHTTCCEEE---EEECSCHHHHHHHHHHHTTCSEEEEECCC----CSCHHHH----HHHCHHHHHHHH-CS-SCEE
T ss_pred HHHHHHcCCcEEE---EEecCCHHHHHHHHHHhcCcCEEEEeCCC----CCCccce----eeCcHHHHHHhc-CC-CCEE
Confidence 332211 112332 2333332333344333 39999999997 3334333 266666666642 12 5899
Q ss_pred EEeee
Q 003770 767 IIQQY 771 (796)
Q Consensus 767 vvqq~ 771 (796)
||.+.
T Consensus 287 vv~~~ 291 (294)
T 3loq_A 287 VCKRG 291 (294)
T ss_dssp EECSC
T ss_pred EECCC
Confidence 98764
No 4
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.63 E-value=2e-15 Score=162.63 Aligned_cols=282 Identities=11% Similarity=0.057 Sum_probs=174.5
Q ss_pred ceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCC-chhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHH
Q 003770 452 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSER-SSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFE 530 (796)
Q Consensus 452 lriLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r-~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~ 530 (796)
.+||+|++++++....++.+..++.. ...+++++|+++-... .....-....+...... .++.++.++.+.
T Consensus 8 k~ILv~~D~s~~s~~al~~A~~lA~~---~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~ 79 (319)
T 3olq_A 8 QNLLVVIDPNQDDQPALRRAVYIVQR---NGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGV-----INQKTAWIKQQA 79 (319)
T ss_dssp CEEEEECCTTCSCCHHHHHHHHHHHH---HCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHH---cCCeEEEEEEecccchhhccccChhhHHHHHHHH-----HHHHHHHHHHHH
Confidence 58999999999999999999988854 5678999999863211 00000000000000000 011223333333
Q ss_pred HhhhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEecC
Q 003770 531 AFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDR 610 (796)
Q Consensus 531 ~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgIlvdr 610 (796)
+.....+++++...... .+..++|++.|++.++|+||||+|++...++.+ +|++.++|++++||||.+ |..
T Consensus 80 ~~~~~~~v~~~~~~~~~--g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~------~Gs~~~~vl~~~~~PVlv-v~~ 150 (319)
T 3olq_A 80 RYYLEAGIQIDIKVIWH--NRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLI------FTPLDWQLLRKCPAPVWM-VKD 150 (319)
T ss_dssp HHHHHTTCCEEEEEEEC--SCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCB------CCHHHHHHHHHCSSCEEE-EES
T ss_pred HHHhhcCCeEEEEEEec--CChHHHHHHHHHhcCCCEEEEecCcCchhhccc------ccccHHHHHhcCCCCEEE-ecC
Confidence 33334678888877733 489999999999999999999999876544433 778899999999999876 443
Q ss_pred CCCCCcccccCCcceEEEEeccCCcC-------hHHHHHHHHHHhcCC--CeEEEEEEeeecccccCCccccCCc-----
Q 003770 611 GLGGTTQVSASNVSYTITVLFFGGRD-------DREALACGARMAEHP--GISFIVIRFLLAADAIGNTVSVDMA----- 676 (796)
Q Consensus 611 g~~~~~~~~~~~~~~~i~~~f~GG~d-------dreAL~~a~rma~~~--~v~ltvv~~~~~~~~~~~~~~~~~~----- 676 (796)
+. ....+||++++.|.++ ++.|+++|.++|+.. +.+++++++.+.............+
T Consensus 151 ~~--------~~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~ 222 (319)
T 3olq_A 151 KE--------WPEYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYN 222 (319)
T ss_dssp SC--------CCTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHH
T ss_pred cc--------cccCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHH
Confidence 22 1246799999999995 489999999999876 9999999998643211000000000
Q ss_pred -CccccHHHHHHHHHhhcCCCCceEEEEEEecChHHHHHHHHhcc--CCCEEEEccCCCchhhcccccCCCCCccccchh
Q 003770 677 -GNASMDEEVLSEFKLKTSRNGSVRYEERLVRNTAETIAVIREVS--RCNLLLVGRMPDGELALALSTRSDCLELGPVGS 753 (796)
Q Consensus 677 -~~~~~d~~~~~~~~~~~~~~~~v~~~e~~v~~~~~~~~~l~~~~--~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~igd 753 (796)
..++..++.++++..++.. ..+.+ ....++..+. +++..+ ++||+++|+++ -+|+.+| =+|-+.+
T Consensus 223 ~~~~~~~~~~l~~~~~~~~~-~~~~~-~v~~g~~~~~--I~~~a~~~~~dLiV~G~~g----~~~~~~~----~~Gsv~~ 290 (319)
T 3olq_A 223 NALRGQHLIAMKELRQKFSI-PEEKT-HVKEGLPEQV--IPQVCEELNAGIVVLGILG----RTGLSAA----FLGNTAE 290 (319)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-CGGGE-EEEESCHHHH--HHHHHHHTTEEEEEEECCS----CCSTHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCC-CcccE-EEecCCcHHH--HHHHHHHhCCCEEEEeccC----ccCCccc----cccHHHH
Confidence 0011123455666655532 22222 1223444443 333333 38999999987 3334433 2677777
Q ss_pred hhccCCCCceeEEEEeeec
Q 003770 754 LLTSLEFSTASVLIIQQYS 772 (796)
Q Consensus 754 ~las~d~~~~SvLvvqq~~ 772 (796)
-+... .. .+||||..+.
T Consensus 291 ~vl~~-~~-~pVLvv~~~~ 307 (319)
T 3olq_A 291 QLIDH-IK-CDLLAIKPDG 307 (319)
T ss_dssp HHHTT-CC-SEEEEECCTT
T ss_pred HHHhh-CC-CCEEEECCCC
Confidence 77653 12 6999997654
No 5
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.63 E-value=2.8e-15 Score=160.94 Aligned_cols=276 Identities=15% Similarity=0.151 Sum_probs=169.3
Q ss_pred cceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCch-h-HHHHhhhhcCCCCCcCCCCCCCcchHHHH
Q 003770 451 QFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSS-A-ILMVHKARRNGLPFWNRGRQSNPNHIVVA 528 (796)
Q Consensus 451 elriLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s-~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 528 (796)
..+||+|++++++...+++.+..++.. ...+++++|+++. .... + ...+.+.... . .+..++.++.
T Consensus 19 ~~~ILv~~D~s~~s~~al~~A~~lA~~---~~a~l~ll~v~~~-~~~~~~~~~~~~~~~~~-~-------~~~~~~~l~~ 86 (309)
T 3cis_A 19 SLGIIVGIDDSPAAQVAVRWAARDAEL---RKIPLTLVHAVSP-EVATWLEVPLPPGVLRW-Q-------QDHGRHLIDD 86 (309)
T ss_dssp TTEEEEECCSSHHHHHHHHHHHHHHHH---HTCCEEEEEECCC-CCCCTTCCCCCHHHHHH-H-------HHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHh---cCCcEEEEEEecC-cccccccCCCCchhhHH-H-------HHHHHHHHHH
Confidence 468999999999999999998888754 4567899999972 2111 0 0000000000 0 0112333333
Q ss_pred HHHhhhc-----cCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCc
Q 003770 529 FEAFQQL-----SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCS 603 (796)
Q Consensus 529 f~~~~~~-----~~v~v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~Apcs 603 (796)
+.+..+. .++.++..+..+ +..++|++.|+ ++|+||||.|++....+.+ +|++.++|++++|||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~------~Gs~~~~vl~~~~~P 155 (309)
T 3cis_A 87 ALKVVEQASLRAGPPTVHSEIVPA---AAVPTLVDMSK--DAVLMVVGCLGSGRWPGRL------LGSVSSGLLRHAHCP 155 (309)
T ss_dssp HHHHHHHHCSSSCCSCEEEEEESS---CHHHHHHHHGG--GEEEEEEESSCTTCCTTCC------SCHHHHHHHHHCSSC
T ss_pred HHHHHHHhcccCCCceEEEEEecC---CHHHHHHHHhc--CCCEEEECCCCCccccccc------cCcHHHHHHHhCCCC
Confidence 3332222 267887776654 89999999997 8999999999876544433 788999999999999
Q ss_pred eEEEecCCCCCCcccccCCcceEEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEeeecccccCCccccCCcCc--ccc
Q 003770 604 VGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGN--ASM 681 (796)
Q Consensus 604 VgIlvdrg~~~~~~~~~~~~~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~~~~~~~~~~~~~~~~~--~~~ 681 (796)
|.| +...... ......++|++++.|.+.++.|+++|.++|+..+.+++++++.+..... . ....+.+ .+.
T Consensus 156 Vlv-v~~~~~~----~~~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~-~--~~~~~~~~~~~~ 227 (309)
T 3cis_A 156 VVI-IHDEDSV----MPHPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVS-E--WPGIDWPATQSM 227 (309)
T ss_dssp EEE-ECTTCCC----SCSSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCT-T--CSSCCHHHHHHH
T ss_pred EEE-EcCCccc----CCCCCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeeccccc-C--CCcccHHHHHHH
Confidence 866 4432210 0123457999999999999999999999999999999999997543211 0 0000000 111
Q ss_pred HHHHHHHHHhhcC---CCCceEEEEEEecChHHHHHHHHhccCCCEEEEccCCCchhhcccccCCCCCccccchhhhccC
Q 003770 682 DEEVLSEFKLKTS---RNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSL 758 (796)
Q Consensus 682 d~~~~~~~~~~~~---~~~~v~~~e~~v~~~~~~~~~l~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~igd~las~ 758 (796)
.++.++++..+.. .+-++.+. +..|.-...+++..+++||+|+|+++ -+++.+| =+|-+.+-+...
T Consensus 228 ~~~~l~~~~~~~~~~~~~~~~~~~---~~~g~~~~~I~~~a~~adliV~G~~~----~~~~~~~----l~Gsv~~~vl~~ 296 (309)
T 3cis_A 228 AEQVLAERLAGWQERYPNVAITRV---VVRDQPARQLVQRSEEAQLVVVGSRG----RGGYAGM----LVGSVGETVAQL 296 (309)
T ss_dssp HHHHHHHHHTTHHHHCTTSCEEEE---EESSCHHHHHHHHHTTCSEEEEESSC----SSCCTTC----SSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEE---EEcCCHHHHHHHhhCCCCEEEECCCC----CCCcccc----ccCcHHHHHHhc
Confidence 1233444333221 12233322 22333233344444469999999997 3344433 367777766642
Q ss_pred CCCceeEEEEee
Q 003770 759 EFSTASVLIIQQ 770 (796)
Q Consensus 759 d~~~~SvLvvqq 770 (796)
- . .+||||..
T Consensus 297 ~-~-~pVlvv~~ 306 (309)
T 3cis_A 297 A-R-TPVIVARE 306 (309)
T ss_dssp C-S-SCEEEECC
T ss_pred C-C-CCEEEeCC
Confidence 1 2 58999864
No 6
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.62 E-value=4e-15 Score=156.18 Aligned_cols=232 Identities=15% Similarity=0.044 Sum_probs=150.4
Q ss_pred eEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCC-------cCCCCCCCcchH
Q 003770 453 RILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPF-------WNRGRQSNPNHI 525 (796)
Q Consensus 453 riLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~~~~~~~~~~~~~-------~~~~~~~~~~~i 525 (796)
+||+|++++++....++.+..++.. ...+++++|+++......... .......... .++ ..+..++.
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~~---~~a~l~ll~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 75 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAYK---LSAPLTVLFVVDTRLARIPEL--LDFGALTVPVPVLRTELERA-LALRGEAV 75 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHHH---HTCCEEEEEEEEHHHHTHHHH--C-------CHHHHHHHHHHH-HHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHHH---hCCcEEEEEEeccCCcccccc--cCchHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 6999999999999999999888854 456789999987532110000 0000000000 000 00112344
Q ss_pred HHHHHHhhhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCcccc-ccCCccccccchhHHHHHHHhhcCCCce
Q 003770 526 VVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQ-RLDGSLETTRSDFRWVNQRVLKHAPCSV 604 (796)
Q Consensus 526 ~~af~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~-~~~g~~~~~~~~~~~vn~~vl~~ApcsV 604 (796)
++.+.+..+..+++++.....+ +..+.|++. +.++|+||||.|++. ...+.+ +|++.++|++++||||
T Consensus 76 l~~~~~~~~~~g~~~~~~~~~g---~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~------~Gs~~~~v~~~a~~PV 144 (268)
T 3ab8_A 76 LERVRQSALAAGVAVEAVLEEG---VPHEAILRR--ARAADLLVLGRSGEAHGDGFGG------LGSTADRVLRASPVPV 144 (268)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEE---CHHHHHHHH--HTTCSEEEEESSCTTSCTTCCS------CCHHHHHHHHHCSSCE
T ss_pred HHHHHHHHHhCCCCeEEEEecC---CHHHHHHhh--ccCCCEEEEeccCCCccccccc------cchhHHHHHHhCCCCE
Confidence 4444444444577788777665 899999999 999999999999875 444433 7889999999999998
Q ss_pred EEEecCCCCCCcccccCCcceEEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEeeecccccCCccccCCcCccccHHH
Q 003770 605 GILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEE 684 (796)
Q Consensus 605 gIlvdrg~~~~~~~~~~~~~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~~~~~~~~~~~~~~~~~~~~d~~ 684 (796)
.+ |.++.. ..++|++++.|.++++.|+++|.++|+..+.+++++++.+..+. .++
T Consensus 145 lv-v~~~~~---------~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~~---------------~~~ 199 (268)
T 3ab8_A 145 LL-APGEPV---------ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDPAR---------------AEA 199 (268)
T ss_dssp EE-ECSSCC---------CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHHH---------------HHH
T ss_pred EE-ECCCCC---------CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcHHH---------------HHH
Confidence 65 544221 34699999999999999999999999988999999999753211 122
Q ss_pred HHHHHHhhcCC-CCceEEEEEEecChHHHHHHHHhccCCCEEEEcc
Q 003770 685 VLSEFKLKTSR-NGSVRYEERLVRNTAETIAVIREVSRCNLLLVGR 729 (796)
Q Consensus 685 ~~~~~~~~~~~-~~~v~~~e~~v~~~~~~~~~l~~~~~~DL~iVGr 729 (796)
.+++++..... +-++.+ .+.+|.....+++..+++||+++|+
T Consensus 200 ~l~~~~~~l~~~~~~~~~---~~~~g~~~~~i~~~a~~~dliV~G~ 242 (268)
T 3ab8_A 200 WALEAEAYLRDHGVEASA---LVLGGDAADHLLRLQGPGDLLALGA 242 (268)
T ss_dssp HHHHHHHHHHHTTCCEEE---EEECSCHHHHHHHHCCTTEEEEEEC
T ss_pred HHHHHHHHHHHcCCceEE---EEeCCChHHHHHHHHHhCCEEEECC
Confidence 33333332211 112332 2234433334555554489999999
No 7
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.06 E-value=3.2e-10 Score=106.78 Aligned_cols=135 Identities=13% Similarity=0.123 Sum_probs=98.2
Q ss_pred ceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHH--HHhhhhcCCCCCcCCCCCCCcchHHHHH
Q 003770 452 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAIL--MVHKARRNGLPFWNRGRQSNPNHIVVAF 529 (796)
Q Consensus 452 lriLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~af 529 (796)
.+||+|+++.++....++.+..++.. ...+++++|+++......... ...+..... .+..++.++.+
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~~---~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~ 74 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQR---HQANLTALYVVDDSAYHTPALDPVLSELLDAE--------AAHAKDAMRQR 74 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHH---HTCEEEEEEEEECCCCCCGGGHHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHHh---cCCEEEEEEEecCccccccccccccHHHHHHH--------HHHHHHHHHHH
Confidence 58999999999999999998888854 567899999998764332111 011100000 02234555555
Q ss_pred HHhhhccCe-EEEEeEEecCCCChHHHHHH-HHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEE
Q 003770 530 EAFQQLSRV-SVRPMTAISSMSDMHEDICT-TAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 606 (796)
Q Consensus 530 ~~~~~~~~v-~v~~~~~vs~~~~m~~dI~~-~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgI 606 (796)
.+..++.++ .++..+..+ +..+.|++ .|++.++|+||||.|++....+.+ +|++.++|++++||||.|
T Consensus 75 ~~~~~~~g~~~~~~~~~~g---~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlv 144 (146)
T 3s3t_A 75 QQFVATTSAPNLKTEISYG---IPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVA------VGSTTSYVVDHAPCNVIV 144 (146)
T ss_dssp HHHHTTSSCCCCEEEEEEE---CHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCS------SCHHHHHHHHHCSSEEEE
T ss_pred HHHHHhcCCcceEEEEecC---ChHHHHHHHHHhhcCCCEEEECCCCCCCcceEE------EcchHHHHhccCCCCEEE
Confidence 555555677 778777776 89999999 999999999999999876554433 789999999999999865
No 8
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.01 E-value=1.1e-09 Score=102.80 Aligned_cols=135 Identities=18% Similarity=0.137 Sum_probs=92.4
Q ss_pred ceEEEEeecCCC--hhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHH
Q 003770 452 FRILACFHSARN--IPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAF 529 (796)
Q Consensus 452 lriLv~v~~~~~--~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af 529 (796)
.|||+|+++.++ ...+++.+..++.. ...+++++|+++.............. . .... .+..++..+.+
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~---~~a~l~ll~v~~~~~~~~~~~~~~~~--~-~~~~----~~~~~~~~~~l 71 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARI---DDAEVHFLTVIPSLPYYASLGMAYTA--E-LPGM----DELREGSETQL 71 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHH---HTCEEEEEEEECC-------------------CH----HHHHHHHHHHH
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHh---cCCeEEEEEEecCCcccccccccccc--h-hhhH----HHHHHHHHHHH
Confidence 489999999999 89999998888753 56789999999865322211000000 0 0000 02234566666
Q ss_pred HHhhhcc---CeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEE
Q 003770 530 EAFQQLS---RVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 606 (796)
Q Consensus 530 ~~~~~~~---~v~v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgI 606 (796)
+++.++. ++.++..+..+ +..+.|++.|++.++|+||||.|+ .+..+. .+|++.++|++++||||.|
T Consensus 72 ~~~~~~~~~~~~~v~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~------~~Gs~~~~v~~~~~~pVlv 141 (143)
T 3fdx_A 72 KEIAKKFSIPEDRMHFHVAEG---SPKDKILALAKSLPADLVIIASHR-PDITTY------LLGSNAAAVVRHAECSVLV 141 (143)
T ss_dssp HHHHTTSCCCGGGEEEEEEES---CHHHHHHHHHHHTTCSEEEEESSC-TTCCSC------SSCHHHHHHHHHCSSEEEE
T ss_pred HHHHHHcCCCCCceEEEEEec---ChHHHHHHHHHHhCCCEEEEeCCC-CCCeee------eeccHHHHHHHhCCCCEEE
Confidence 6666553 35677777766 899999999999999999999994 433333 3789999999999999865
No 9
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=98.99 E-value=3.6e-09 Score=101.51 Aligned_cols=141 Identities=18% Similarity=0.214 Sum_probs=94.1
Q ss_pred ceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccC----CchhHH-----H-Hhhhh-cCCCCCcCCCCCC
Q 003770 452 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSE----RSSAIL-----M-VHKAR-RNGLPFWNRGRQS 520 (796)
Q Consensus 452 lriLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~----r~s~~~-----~-~~~~~-~~~~~~~~~~~~~ 520 (796)
.|||+|+++.++...+++.+..++.. ...+++++|+++... ...... . +.... .. ...++. .+
T Consensus 6 ~~ILv~vD~s~~s~~al~~a~~la~~---~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~ 79 (162)
T 1mjh_A 6 KKILYPTDFSETAEIALKHVKAFKTL---KAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFEN--ELKNKL-TE 79 (162)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTCCS---SCCEEEEEEEEEGGGTC-----------------CHHHHH--HHHHHH-HH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhh---cCCeEEEEEEecCccccccccccccccccccccchhhhHH--HHHHHH-HH
Confidence 48999999999999999999998854 578899999997530 000000 0 00000 00 000000 01
Q ss_pred CcchHHHHHHHhhhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcC
Q 003770 521 NPNHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHA 600 (796)
Q Consensus 521 ~~~~i~~af~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~A 600 (796)
+.++.++.+.+..+..++.++..+..+ +..+.|++.|++.++|+||||.|++....+.+ +|++.++|++++
T Consensus 80 ~~~~~l~~~~~~~~~~g~~~~~~v~~G---~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~------~GSv~~~vl~~~ 150 (162)
T 1mjh_A 80 EAKNKMENIKKELEDVGFKVKDIIVVG---IPHEEIVKIAEDEGVDIIIMGSHGKTNLKEIL------LGSVTENVIKKS 150 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCSSCCTTCS------SCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCceEEEEcCC---CHHHHHHHHHHHcCCCEEEEcCCCCCCccceE------ecchHHHHHHhC
Confidence 123344444433334678888776665 89999999999999999999999886554433 789999999999
Q ss_pred CCceEEE
Q 003770 601 PCSVGIL 607 (796)
Q Consensus 601 pcsVgIl 607 (796)
||||.|+
T Consensus 151 ~~pVlvv 157 (162)
T 1mjh_A 151 NKPVLVV 157 (162)
T ss_dssp CSCEEEE
T ss_pred CCCEEEE
Confidence 9998763
No 10
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=98.95 E-value=1.4e-09 Score=102.44 Aligned_cols=140 Identities=16% Similarity=0.142 Sum_probs=94.4
Q ss_pred ceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHH-HhhhhcCCCCCcCCCCCCCcchHHHHHH
Q 003770 452 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILM-VHKARRNGLPFWNRGRQSNPNHIVVAFE 530 (796)
Q Consensus 452 lriLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~af~ 530 (796)
.|||+|++++++....++.+..++.. ...+++++|+++.......... ......... .+ ...+..++.++.+.
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~~---~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~l~~~~ 76 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQL---TGAELYILCVFKHHSLLEASLSMARPEQLDIP--DD-ALKDYATEIAVQAK 76 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHHH---HCCEEEEEEEECCHHHHHHTBSSCCCGGGCCC--TT-HHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHh---cCCEEEEEEEecCcccccccccccChhhhhhH--HH-HHHHHHHHHHHHHH
Confidence 37999999999999999998888854 4678999999975421111000 000000000 00 00022344455555
Q ss_pred HhhhccCeEE---EEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEE
Q 003770 531 AFQQLSRVSV---RPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 606 (796)
Q Consensus 531 ~~~~~~~v~v---~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgI 606 (796)
+..+..++++ +.....+ +..+.|++.|++.++|+||||.|++.+..+.+ +|++.++|++++||||.|
T Consensus 77 ~~~~~~g~~~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlv 146 (147)
T 3hgm_A 77 TRATELGVPADKVRAFVKGG---RPSRTIVRFARKRECDLVVIGAQGTNGDKSLL------LGSVAQRVAGSAHCPVLV 146 (147)
T ss_dssp HHHHHTTCCGGGEEEEEEES---CHHHHHHHHHHHTTCSEEEECSSCTTCCSCCC------CCHHHHHHHHHCSSCEEE
T ss_pred HHHHhcCCCccceEEEEecC---CHHHHHHHHHHHhCCCEEEEeCCCCcccccee------eccHHHHHHhhCCCCEEE
Confidence 5544456666 7666665 89999999999999999999999876554433 789999999999999865
No 11
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=98.93 E-value=4e-09 Score=100.79 Aligned_cols=129 Identities=13% Similarity=0.130 Sum_probs=93.9
Q ss_pred cceEEEEeec-CCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHH
Q 003770 451 QFRILACFHS-ARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAF 529 (796)
Q Consensus 451 elriLv~v~~-~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af 529 (796)
-.+||+|+++ ++....+++.+..++.. ...+++++|+++..+.... +.+ +..++.++.+
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la~~---~~a~l~llhV~~~~~~~~~-----~~~------------~~~~~~l~~~ 83 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEARL---RGVPVYVVHSLPGGGRTKD-----EDI------------IEAKETLSWA 83 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHHH---HTCCEEEEEEECCSTTSCH-----HHH------------HHHHHHHHHH
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHHHh---cCCEEEEEEEEcCCCcccH-----HHH------------HHHHHHHHHH
Confidence 3589999999 99999999999888854 4567899999985432111 000 1234455555
Q ss_pred HHhhhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEE
Q 003770 530 EAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 606 (796)
Q Consensus 530 ~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgI 606 (796)
.+..++.++.++..+.+. ..+..+.|++.|++.++|+||||.|++....+.+ +|++.++|++++||||.|
T Consensus 84 ~~~~~~~g~~~~~~~~v~-~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~------lGSv~~~vl~~a~~PVLv 153 (155)
T 3dlo_A 84 VSIIRKEGAEGEEHLLVR-GKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLI------FGSVARDVILKANKPVIC 153 (155)
T ss_dssp HHHHHHTTCCEEEEEEES-SSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEE------CCHHHHHHHHHCSSCEEE
T ss_pred HHHHHhcCCCceEEEEec-CCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEE------eccHHHHHHHhCCCCEEE
Confidence 555444566666544442 2489999999999999999999999886554433 789999999999999865
No 12
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=98.92 E-value=7.2e-10 Score=105.83 Aligned_cols=136 Identities=12% Similarity=0.113 Sum_probs=94.1
Q ss_pred cceEEEEee--cCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHH
Q 003770 451 QFRILACFH--SARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVA 528 (796)
Q Consensus 451 elriLv~v~--~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 528 (796)
-.+||+|++ ++++....++.+..++.. ...+++++|+++............+.... . .+..++.++.
T Consensus 15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~---~~a~l~ll~v~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~l~~ 83 (156)
T 3fg9_A 15 YRRILLTVDEDDNTSSERAFRYATTLAHD---YDVPLGICSVLESEDINIFDSLTPSKIQA-K-------RKHVEDVVAE 83 (156)
T ss_dssp CC-EEEECCSCCCHHHHHHHHHHHHHHHH---HTCCEEEEEEECCCCTTCCCSSHHHHHHH-H-------HHHHHHHHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHh---cCCEEEEEEEEeCCCccccccCCHHHHHH-H-------HHHHHHHHHH
Confidence 458999999 999999999998888854 46778999999865321100000000000 0 0223455555
Q ss_pred HHHhhhccCe-EEEEeEEecCCCChHHHHHHH-HHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEE
Q 003770 529 FEAFQQLSRV-SVRPMTAISSMSDMHEDICTT-AESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 606 (796)
Q Consensus 529 f~~~~~~~~v-~v~~~~~vs~~~~m~~dI~~~-A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgI 606 (796)
+.+..+..++ .++..+..+ .+..+.|++. |++.++|+||||.|++...+ .+ +|++.++|++++||||.|
T Consensus 84 ~~~~~~~~g~~~~~~~v~~~--g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~~------~Gs~~~~vl~~a~~PVlv 154 (156)
T 3fg9_A 84 YVQLAEQRGVNQVEPLVYEG--GDVDDVILEQVIPEFKPDLLVTGADTEFPHS-KI------AGAIGPRLARKAPISVIV 154 (156)
T ss_dssp HHHHHHHHTCSSEEEEEEEC--SCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-SS------CSCHHHHHHHHCSSEEEE
T ss_pred HHHHHHHcCCCceEEEEEeC--CCHHHHHHHHHHHhcCCCEEEECCCCCCccc-ee------ecchHHHHHHhCCCCEEE
Confidence 5544444566 477777772 3899999999 99999999999999876543 23 778999999999999865
No 13
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=98.92 E-value=4.3e-09 Score=101.91 Aligned_cols=144 Identities=14% Similarity=0.078 Sum_probs=91.4
Q ss_pred ceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhH-HHH--hh-hhcCCCCCcCCCCCCCcchHHH
Q 003770 452 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAI-LMV--HK-ARRNGLPFWNRGRQSNPNHIVV 527 (796)
Q Consensus 452 lriLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~-~~~--~~-~~~~~~~~~~~~~~~~~~~i~~ 527 (796)
.+||+|+++.++...+++.+..++.. ...+++++|+++........ -.+ +. .........++. .++.++.++
T Consensus 6 ~~ILv~vD~s~~s~~al~~A~~la~~---~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ 81 (170)
T 2dum_A 6 RKVLFPTDFSEGAYRAVEVFEKRNKM---EVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKL-KEEASRKLQ 81 (170)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHCCS---CCSEEEEEEEEETTGGGCCC------------CCTTSHHHH-HHHHHHHHH
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHh---cCCEEEEEEEecCccccccccccccccccccccHHHHHHHH-HHHHHHHHH
Confidence 48999999999999999999999854 67889999998743211000 000 00 000000000000 011233333
Q ss_pred HHHHhhhccCeEEEE--eEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceE
Q 003770 528 AFEAFQQLSRVSVRP--MTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVG 605 (796)
Q Consensus 528 af~~~~~~~~v~v~~--~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVg 605 (796)
.+.+..+..++.++. .+..+ +..+.|++.|++.++|+||||.|++....+.+ +|++.++|++++||||.
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~g---~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~------~Gsv~~~vl~~~~~PVl 152 (170)
T 2dum_A 82 EKAEEVKRAFRAKNVRTIIRFG---IPWDEIVKVAEEENVSLIILPSRGKLSLSHEF------LGSTVMRVLRKTKKPVL 152 (170)
T ss_dssp HHHHHHHHHTTCSEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCCCC--TTC------CCHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHcCCceeeeeEEecC---ChHHHHHHHHHHcCCCEEEECCCCCCccccce------echHHHHHHHhCCCCEE
Confidence 333333334566665 55554 89999999999999999999999876544333 78999999999999987
Q ss_pred EEe
Q 003770 606 ILI 608 (796)
Q Consensus 606 Ilv 608 (796)
|+-
T Consensus 153 vv~ 155 (170)
T 2dum_A 153 IIK 155 (170)
T ss_dssp EEC
T ss_pred EEc
Confidence 743
No 14
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=98.92 E-value=2.8e-09 Score=102.78 Aligned_cols=138 Identities=9% Similarity=0.064 Sum_probs=92.7
Q ss_pred CcceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEE--EeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHH
Q 003770 450 AQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYAL--HLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVV 527 (796)
Q Consensus 450 ~elriLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~~l--hlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 527 (796)
...+||+|+++++....+++.+..++ + ...+++++ |+++........... .. . ..+ ...+..++.++
T Consensus 16 ~~~~ILv~vD~s~~s~~al~~A~~lA---~-~~a~l~ll~a~v~~~~~~~~~~~~~-~~--~---~~~-~~~~~~~~~l~ 84 (163)
T 1tq8_A 16 AYKTVVVGTDGSDSSMRAVDRAAQIA---G-ADAKLIIASAYLPQHEDARAADILK-DE--S---YKV-TGTAPIYEILH 84 (163)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHH---T-TTSEEEEEEECCC---------------------------CCTHHHHHH
T ss_pred cCCEEEEEcCCCHHHHHHHHHHHHHh---C-CCCEEEEEEeeeccCcccccccccc-cH--H---HHH-HHHHHHHHHHH
Confidence 34689999999998899999888887 4 56789999 888654320111000 00 0 000 00134556666
Q ss_pred HHHHhhhccCeE-EEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEE
Q 003770 528 AFEAFQQLSRVS-VRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 606 (796)
Q Consensus 528 af~~~~~~~~v~-v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgI 606 (796)
.+.+..+..+++ ++..+..+ +..+.|++.|++.++|+||||.|++....+ ..+|++.++|++++||||.|
T Consensus 85 ~~~~~~~~~gv~~v~~~v~~G---~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~------~~lGSva~~vl~~a~~PVlv 155 (163)
T 1tq8_A 85 DAKERAHNAGAKNVEERPIVG---APVDALVNLADEEKADLLVVGNVGLSTIAG------RLLGSVPANVSRRAKVDVLI 155 (163)
T ss_dssp HHHHHHHTTTCCEEEEEEECS---SHHHHHHHHHHHTTCSEEEEECCCCCSHHH------HHTBBHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCeEEEEEecC---CHHHHHHHHHHhcCCCEEEECCCCCCcccc------eeeccHHHHHHHhCCCCEEE
Confidence 665555556677 77777655 899999999999999999999997754322 23788999999999999876
Q ss_pred E
Q 003770 607 L 607 (796)
Q Consensus 607 l 607 (796)
+
T Consensus 156 V 156 (163)
T 1tq8_A 156 V 156 (163)
T ss_dssp E
T ss_pred E
Confidence 3
No 15
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=98.89 E-value=2.5e-09 Score=99.60 Aligned_cols=132 Identities=17% Similarity=0.174 Sum_probs=88.1
Q ss_pred ceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHH
Q 003770 452 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEA 531 (796)
Q Consensus 452 lriLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 531 (796)
.+||+|+++.+....+++.+..++.. ...+++++|+++.... .. .....+ ...+ +..++..+.+++
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~---~~a~l~ll~v~~~~~~--~~---~~~~~~--~~~~----~~~~~~~~~l~~ 68 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAEA---HGARLIVVHAYEPVPD--YL---GEPFFE--EALR----RRLERAEGVLEE 68 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHH---HTCEEEEEEEECC---------------------C----HHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhh---cCCEEEEEEEecCCCc--cc---cccchH--HHHH----HHHHHHHHHHHH
Confidence 47999999999888999998888754 4678999999873211 10 000000 0000 111233334444
Q ss_pred hhhccCe-EEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEE
Q 003770 532 FQQLSRV-SVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 606 (796)
Q Consensus 532 ~~~~~~v-~v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgI 606 (796)
+.+..++ .++..+..+ +..+.|++.|++.++|+||||.|++....+.+ +|++.++|++++||||.|
T Consensus 69 ~~~~~g~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlv 135 (137)
T 2z08_A 69 ARALTGVPKEDALLLEG---VPAEAILQAARAEKADLIVMGTRGLGALGSLF------LGSQSQRVVAEAPCPVLL 135 (137)
T ss_dssp HHHHHCCCGGGEEEEES---SHHHHHHHHHHHTTCSEEEEESSCTTCCSCSS------SCHHHHHHHHHCSSCEEE
T ss_pred HHHHcCCCccEEEEEec---CHHHHHHHHHHHcCCCEEEECCCCCchhhhhh------hccHHHHHHhcCCCCEEE
Confidence 4433445 555555444 89999999999999999999999876544433 789999999999999866
No 16
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=98.85 E-value=7.8e-09 Score=96.24 Aligned_cols=132 Identities=9% Similarity=0.052 Sum_probs=93.4
Q ss_pred ceEEEEeecCCChhhHHHHHHHhc-cCCCCCCceEEEEEeeeccCCchhHH-HHhhhhcCCCCCcCCCCC-CCcchHHHH
Q 003770 452 FRILACFHSARNIPSTINLLEALR-GIQKSEGLCVYALHLMELSERSSAIL-MVHKARRNGLPFWNRGRQ-SNPNHIVVA 528 (796)
Q Consensus 452 lriLv~v~~~~~~~~li~ll~~~~-~~~~~~p~~v~~lhlvel~~r~s~~~-~~~~~~~~~~~~~~~~~~-~~~~~i~~a 528 (796)
.+||+|++++++....++.+..++ .. ...+++++|+++......... ...+.... . . +..++.++.
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~---~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~l~~ 70 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKD---ADCTLTLIHVKPEFMLYGEAVLAAYDEIEM-K-------EEEKAKLLTQK 70 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTC---TTEEEEEEEEECCCCCCHHHHHHHHHHHHH-H-------HHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccC---CCCEEEEEEEecCCCcccccccCcHHHHHH-H-------HHHHHHHHHHH
Confidence 379999999999999999999988 54 578899999998765432211 01110000 0 0 123445555
Q ss_pred HHHhhhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEE
Q 003770 529 FEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 606 (796)
Q Consensus 529 f~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgI 606 (796)
+.+..++.++.++..+..+ +..+.|++.|+ ++|+||||.|++....+.+ |++.++|++++||||.|
T Consensus 71 ~~~~~~~~g~~~~~~v~~g---~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-------Gs~~~~vl~~~~~pVlv 136 (138)
T 3idf_A 71 FSTFFTEKGINPFVVIKEG---EPVEMVLEEAK--DYNLLIIGSSENSFLNKIF-------ASHQDDFIQKAPIPVLI 136 (138)
T ss_dssp HHHHHHTTTCCCEEEEEES---CHHHHHHHHHT--TCSEEEEECCTTSTTSSCC-------CCTTCHHHHHCSSCEEE
T ss_pred HHHHHHHCCCCeEEEEecC---ChHHHHHHHHh--cCCEEEEeCCCcchHHHHh-------CcHHHHHHhcCCCCEEE
Confidence 5555555678888777776 79999999999 9999999999876554333 45667999999999865
No 17
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=98.84 E-value=1.7e-09 Score=102.40 Aligned_cols=138 Identities=14% Similarity=0.121 Sum_probs=85.1
Q ss_pred ceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHH
Q 003770 452 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEA 531 (796)
Q Consensus 452 lriLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 531 (796)
.+||+|++++++....++.+..++.. ...+++++|+++........ ... ..... .++......++..+.+++
T Consensus 7 ~~ILv~vD~s~~s~~al~~a~~la~~---~~a~l~ll~v~~~~~~~~~~---~~~-~~~~~-~~~~~~~~~~~~~~~l~~ 78 (150)
T 3tnj_A 7 HHILLAVDFSSEDSQVVQKVRNLASQ---IGARLSLIHVLDNIPMPDTP---YGT-AIPLD-TETTYDAMLDVEKQKLSQ 78 (150)
T ss_dssp SEEEEECCCSTTHHHHHHHHHHHHHH---HTCEEEEEEEEC-----------CTT-CCCSS-SCCCHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhh---cCCEEEEEEEEcCccccccc---ccc-ccCcC-HHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999988854 56789999998753221000 000 00000 000000112334444555
Q ss_pred hhhccCeE-EEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEE
Q 003770 532 FQQLSRVS-VRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGIL 607 (796)
Q Consensus 532 ~~~~~~v~-v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgIl 607 (796)
+.++.++. ++.....+ +..+.|++.|++.++|+||||.|++.+.. .+ +|++.++|++++||||.|+
T Consensus 79 ~~~~~~~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~------~Gs~~~~vl~~~~~pVlvv 145 (150)
T 3tnj_A 79 IGNTLGIDPAHRWLVWG---EPREEIIRIAEQENVDLIVVGSHGRHGLA-LL------LGSTANSVLHYAKCDVLAV 145 (150)
T ss_dssp HHHHHTCCGGGEEEEES---CHHHHHHHHHHHTTCSEEEEEEC---------------CCCHHHHHHHHCSSEEEEE
T ss_pred HHHHcCCCcceEEEecC---CHHHHHHHHHHHcCCCEEEEecCCCCCcC-eE------ecchHHHHHHhCCCCEEEE
Confidence 55443444 34444444 89999999999999999999999876544 33 7788999999999998764
No 18
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=98.83 E-value=1.6e-08 Score=98.41 Aligned_cols=143 Identities=13% Similarity=0.135 Sum_probs=87.4
Q ss_pred ceEEEEeecCC---------ChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchh-----HHHHhhhhcCCCCCcCCC
Q 003770 452 FRILACFHSAR---------NIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSA-----ILMVHKARRNGLPFWNRG 517 (796)
Q Consensus 452 lriLv~v~~~~---------~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~-----~~~~~~~~~~~~~~~~~~ 517 (796)
.+||+|+++.+ ....+++.+..+.........+++++|+++....... .......+......
T Consensus 6 ~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 81 (175)
T 2gm3_A 6 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSN---- 81 (175)
T ss_dssp EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSH----
T ss_pred cEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHH----
Confidence 58999999988 7888898888765320124688999999864321000 00000000000000
Q ss_pred CCCCcchHHHHHHHhhhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHh
Q 003770 518 RQSNPNHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVL 597 (796)
Q Consensus 518 ~~~~~~~i~~af~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl 597 (796)
....++.++.+.+..+..++.++..+..+ +..+.|++.|++.++|+||||.|++....+.+ +|++.++|+
T Consensus 82 -~~~~~~~l~~~~~~~~~~g~~~~~~v~~G---~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~------~Gsva~~vl 151 (175)
T 2gm3_A 82 -KAKGLHLLEFFVNKCHEIGVGCEAWIKTG---DPKDVICQEVKRVRPDFLVVGSRGLGRFQKVF------VGTVSAFCV 151 (175)
T ss_dssp -HHHHHHHHHHHHHHHHHHTCEEEEEEEES---CHHHHHHHHHHHHCCSEEEEEECCCC--------------CHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHCCCceEEEEecC---CHHHHHHHHHHHhCCCEEEEeCCCCChhhhhh------cCchHHHHH
Confidence 01123344444443334577887776655 89999999999999999999999876544433 788999999
Q ss_pred hcCCCceEEEe
Q 003770 598 KHAPCSVGILI 608 (796)
Q Consensus 598 ~~ApcsVgIlv 608 (796)
+++||||.|+-
T Consensus 152 ~~a~~pVlvv~ 162 (175)
T 2gm3_A 152 KHAECPVMTIK 162 (175)
T ss_dssp HHCSSCEEEEE
T ss_pred hCCCCCEEEEc
Confidence 99999997743
No 19
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=98.81 E-value=1.4e-08 Score=94.84 Aligned_cols=132 Identities=8% Similarity=0.100 Sum_probs=88.9
Q ss_pred ceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeec-cCCchhHH-HHhhhhcCCCCCcCCCCCCCcchHHHHH
Q 003770 452 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMEL-SERSSAIL-MVHKARRNGLPFWNRGRQSNPNHIVVAF 529 (796)
Q Consensus 452 lriLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel-~~r~s~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~af 529 (796)
.+||+|+++.++...+++.+..++.. ...+++++|+++- +....... ...+. ... ...++..+.+
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~---~~a~l~ll~v~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~l 69 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAKR---HDAKLSIIHVDVNFSDLYTGLIDVNMSS-MQD---------RISTETQKAL 69 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHHH---HTCEEEEEEEEECCGGGCCCCEEHHHHH-HTT---------CCCCHHHHHH
T ss_pred ceEEEEecCchhhHHHHHHHHHHHHh---cCCEEEEEEEecCchhhhccccccchHH-HHH---------HHHHHHHHHH
Confidence 37999999999999999998888854 4678999999842 22111000 00000 000 1223445555
Q ss_pred HHhhhccCeEE-EEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEe
Q 003770 530 EAFQQLSRVSV-RPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILI 608 (796)
Q Consensus 530 ~~~~~~~~v~v-~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgIlv 608 (796)
+++.+..++.+ +..+..+ +..+.|++.|++.++|+||||.| +.. +. + ++++.++|++++||||.|+-
T Consensus 70 ~~~~~~~~~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~-~~~----~~--~--lgs~~~~vl~~~~~pVlvv~ 137 (141)
T 1jmv_A 70 LDLAESVDYPISEKLSGSG---DLGQVLSDAIEQYDVDLLVTGHH-QDF----WS--K--LMSSTRQVMNTIKIDMLVVP 137 (141)
T ss_dssp HHHHHHSSSCCCCEEEEEE---CHHHHHHHHHHHTTCCEEEEEEC-CCC----HH--H--HHHHHHHHHTTCCSEEEEEE
T ss_pred HHHHHHcCCCceEEEEecC---CHHHHHHHHHHhcCCCEEEEeCC-Cch----hh--h--hcchHHHHHhcCCCCEEEee
Confidence 55555445554 3444444 89999999999999999999998 532 21 1 57999999999999997743
No 20
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=98.55 E-value=2.1e-07 Score=86.49 Aligned_cols=129 Identities=9% Similarity=-0.030 Sum_probs=81.4
Q ss_pred ceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEee-ec-cCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHH
Q 003770 452 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLM-EL-SERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAF 529 (796)
Q Consensus 452 lriLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlv-el-~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af 529 (796)
.+||+|+++++.....++.+..++.. ...+++++|++ +. +.. ... ............++. .++.++.++.+
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la~~---~~a~l~ll~v~~~~~~~~-~~~--~~~~~~~~~~~~~~~-~~~~~~~l~~~ 77 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFSEK---LGAELDILAVLEDVYNLE-RAN--VTFGLPFPPEIKEES-KKRIERRLREV 77 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHHTT---TCCEEEEEEECHHHHHHH-HHH--HHHCCCCCTHHHHHH-HHHHHHHHHHH
T ss_pred cEEEEEccCCHhHHHHHHHHHHHHHH---cCCeEEEEEEeccccccc-ccc--cccCCCCChHHHHHH-HHHHHHHHHHH
Confidence 48999999999999999999988854 57889999998 63 100 000 000000000000000 01122333333
Q ss_pred HHh-hhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEE
Q 003770 530 EAF-QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 606 (796)
Q Consensus 530 ~~~-~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgI 606 (796)
+.+ ....+ .++..+..+ +..+.|++.|++.++|+||||.|++ ++.++|++++||||.|
T Consensus 78 ~~~~~~~~~-~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~g~---------------sv~~~vl~~a~~PVlv 136 (138)
T 1q77_A 78 WEKLTGSTE-IPGVEYRIG---PLSEEVKKFVEGKGYELVVWACYPS---------------AYLCKVIDGLNLASLI 136 (138)
T ss_dssp HHHHHSCCC-CCCEEEECS---CHHHHHHHHHTTSCCSEEEECSCCG---------------GGTHHHHHHSSSEEEE
T ss_pred HHHhhccCC-cceEEEEcC---CHHHHHHHHHHhcCCCEEEEeCCCC---------------chHHHHHHhCCCceEe
Confidence 221 22234 555555544 8999999999999999999999854 4567999999999865
No 21
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=98.47 E-value=2e-07 Score=98.51 Aligned_cols=137 Identities=18% Similarity=0.061 Sum_probs=90.0
Q ss_pred CcceEEEEeecCCC-------hhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCc
Q 003770 450 AQFRILACFHSARN-------IPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNP 522 (796)
Q Consensus 450 ~elriLv~v~~~~~-------~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~ 522 (796)
...+||+|++..+. ...+++.+..++.. ...+++++|+++....... .+... . .+ +..
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~---~~a~l~ll~v~~~~~~~~~--~~~~~-~-----~~----~~~ 197 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGL---AKATLHVISAHPSPMLSSA--DPTFQ-L-----SE----TIE 197 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHH---TTCEEEEEEEEC-----------CHH-H-----HH----HHH
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHH---cCCeEEEEEEecCcccccc--CchhH-H-----HH----HHH
Confidence 34689999999887 78888888888754 5678999999985432211 00000 0 00 011
Q ss_pred chHHHHHHHhhhccCeE-EEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCC
Q 003770 523 NHIVVAFEAFQQLSRVS-VRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAP 601 (796)
Q Consensus 523 ~~i~~af~~~~~~~~v~-v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~Ap 601 (796)
++..+.++.+.++.++. ++.....+ +..+.|++.|++.++|+|+||.|++.+..+.+ +|++.++|++++|
T Consensus 198 ~~~~~~l~~~~~~~g~~~~~~~v~~g---~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~------~Gsv~~~vl~~~~ 268 (290)
T 3mt0_A 198 ARYREACRTFQAEYGFSDEQLHIEEG---PADVLIPRTAQKLDAVVTVIGTVARTGLSGAL------IGNTAEVVLDTLE 268 (290)
T ss_dssp HHHHHHHHHHHHHHTCCTTTEEEEES---CHHHHHHHHHHHHTCSEEEEECCSSCCGGGCC------SCHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHcCCCcceEEEecc---CHHHHHHHHHHhcCCCEEEECCCCCcCCccee------cchHHHHHHhcCC
Confidence 22333444454443442 33334444 89999999999999999999999886655444 7899999999999
Q ss_pred CceEEEecC
Q 003770 602 CSVGILIDR 610 (796)
Q Consensus 602 csVgIlvdr 610 (796)
|||.|+-++
T Consensus 269 ~pVLvv~~~ 277 (290)
T 3mt0_A 269 SDVLVLKPD 277 (290)
T ss_dssp SEEEEECCH
T ss_pred CCEEEECCC
Confidence 998775443
No 22
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=98.32 E-value=2.4e-07 Score=99.06 Aligned_cols=145 Identities=14% Similarity=0.102 Sum_probs=91.4
Q ss_pred cceEEEEeecCCC-------hhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcc
Q 003770 451 QFRILACFHSARN-------IPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPN 523 (796)
Q Consensus 451 elriLv~v~~~~~-------~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (796)
..|||+|+++.+. ...+++.+..++.. .....+++++|+++........-.+.. ......+ +..+
T Consensus 156 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~-~~~~a~l~ll~v~~~~~~~~~~~~~~~---~~~~~~~----~~~~ 227 (319)
T 3olq_A 156 YGTIVVAANLSNEESYHDALNLKLIELTNDLSHR-IQKDPDVHLLSAYPVAPINIAIELPDF---DPNLYNN----ALRG 227 (319)
T ss_dssp TCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHH-HCSSCCEEEEEEECCCSCSCCTTCTTC---CHHHHHH----HHHH
T ss_pred CCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHh-ccCCCeEEEEEeecCcchhhhccCCcc---cHHHHHH----HHHH
Confidence 4689999998874 46777777776643 111567899999986543210000000 0000000 1122
Q ss_pred hHHHHHHHhhhccCe-EEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCC
Q 003770 524 HIVVAFEAFQQLSRV-SVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPC 602 (796)
Q Consensus 524 ~i~~af~~~~~~~~v-~v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~Apc 602 (796)
+..+.++.+.++.++ .++.....+ +..+.|++.|++.++|+|+||.|++.+..+. .+|++.++|++++||
T Consensus 228 ~~~~~l~~~~~~~~~~~~~~~v~~g---~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~------~~Gsv~~~vl~~~~~ 298 (319)
T 3olq_A 228 QHLIAMKELRQKFSIPEEKTHVKEG---LPEQVIPQVCEELNAGIVVLGILGRTGLSAA------FLGNTAEQLIDHIKC 298 (319)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEEEES---CHHHHHHHHHHHTTEEEEEEECCSCCSTHHH------HHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCCCcccEEEecC---CcHHHHHHHHHHhCCCEEEEeccCccCCccc------cccHHHHHHHhhCCC
Confidence 334445555544333 233333333 7899999999999999999999987654433 489999999999999
Q ss_pred ceEEEecCCC
Q 003770 603 SVGILIDRGL 612 (796)
Q Consensus 603 sVgIlvdrg~ 612 (796)
||.|+-.+|+
T Consensus 299 pVLvv~~~~~ 308 (319)
T 3olq_A 299 DLLAIKPDGF 308 (319)
T ss_dssp EEEEECCTTC
T ss_pred CEEEECCCCC
Confidence 9987656654
No 23
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=98.30 E-value=1.4e-06 Score=92.10 Aligned_cols=120 Identities=13% Similarity=0.099 Sum_probs=90.4
Q ss_pred CcceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHH
Q 003770 450 AQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAF 529 (796)
Q Consensus 450 ~elriLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af 529 (796)
...+|++|+++.+.....++.+..++.. ...+++++|+.+... .++.++.+
T Consensus 169 ~~~~Ilv~~d~s~~s~~al~~a~~la~~---~~~~l~ll~v~~~~~--------------------------~~~~l~~~ 219 (294)
T 3loq_A 169 LFDRVLVAYDFSKWADRALEYAKFVVKK---TGGELHIIHVSEDGD--------------------------KTADLRVM 219 (294)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHHHH---HTCEEEEEEECSSSC--------------------------CHHHHHHH
T ss_pred cCCEEEEEECCCHHHHHHHHHHHHHhhh---cCCEEEEEEEccCch--------------------------HHHHHHHH
Confidence 3468999999998888889888888743 467789999986432 12233444
Q ss_pred HHhhhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEE
Q 003770 530 EAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGIL 607 (796)
Q Consensus 530 ~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgIl 607 (796)
.++.+..++.++....-+ +..+.|++.|++.++|+|+||.|++.+..+. .+|++.++|++++||||.|+
T Consensus 220 ~~~l~~~~~~~~~~~~~g---~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~------~~Gs~~~~vl~~~~~pvLvv 288 (294)
T 3loq_A 220 EEVIGAEGIEVHVHIESG---TPHKAILAKREEINATTIFMGSRGAGSVMTM------ILGSTSESVIRRSPVPVFVC 288 (294)
T ss_dssp HHHHHHTTCCEEEEEECS---CHHHHHHHHHHHTTCSEEEEECCCCSCHHHH------HHHCHHHHHHHHCSSCEEEE
T ss_pred HHHHHHcCCcEEEEEecC---CHHHHHHHHHHhcCcCEEEEeCCCCCCccce------eeCcHHHHHHhcCCCCEEEE
Confidence 444444566777655544 8999999999999999999999987544332 38899999999999998663
No 24
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=98.21 E-value=2.6e-06 Score=79.63 Aligned_cols=133 Identities=9% Similarity=0.099 Sum_probs=80.1
Q ss_pred cceEEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEeeecccccCCcc--cc--CCcCccccHHHHHHHHHhhcCCCC-
Q 003770 623 VSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTV--SV--DMAGNASMDEEVLSEFKLKTSRNG- 697 (796)
Q Consensus 623 ~~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~~~~~~~~~~--~~--~~~~~~~~d~~~~~~~~~~~~~~~- 697 (796)
..+||++++.|.++.+.|+++|.++|++.+.+++++++.+......... .. ..+..++..++.+++++......+
T Consensus 4 ~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~ 83 (146)
T 3s3t_A 4 RYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVATTSA 83 (146)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred ccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4679999999999999999999999999999999999986532210000 00 001111223356666666543221
Q ss_pred -ceEEEEEEecChHHHHHHHH-hcc--CCCEEEEccCCCchhhcccccCCCCCccccchhhhccCCCCceeEEEE
Q 003770 698 -SVRYEERLVRNTAETIAVIR-EVS--RCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLII 768 (796)
Q Consensus 698 -~v~~~e~~v~~~~~~~~~l~-~~~--~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~SvLvv 768 (796)
++.+. ...++..+ .+++ ..+ ++||+|+|+++ ..++.+| -+|-+.+-+...- . .+||||
T Consensus 84 ~~~~~~-~~~g~~~~--~I~~~~a~~~~~dliV~G~~~----~~~~~~~----~~Gs~~~~vl~~~-~-~pVlvV 145 (146)
T 3s3t_A 84 PNLKTE-ISYGIPKH--TIEDYAKQHPEIDLIVLGATG----TNSPHRV----AVGSTTSYVVDHA-P-CNVIVI 145 (146)
T ss_dssp CCCEEE-EEEECHHH--HHHHHHHHSTTCCEEEEESCC----SSCTTTC----SSCHHHHHHHHHC-S-SEEEEE
T ss_pred cceEEE-EecCChHH--HHHHHHHhhcCCCEEEECCCC----CCCcceE----EEcchHHHHhccC-C-CCEEEe
Confidence 33322 22234433 3444 342 39999999987 3333333 3676666666521 1 578877
No 25
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=98.16 E-value=1.5e-06 Score=82.63 Aligned_cols=129 Identities=15% Similarity=0.095 Sum_probs=79.2
Q ss_pred cceEEEEeccC-CcChHHHHHHHHHHhcCCCeEEEEEEeeecccccCCccccCCcCccccHHHHHHHHHhhcCC-CCceE
Q 003770 623 VSYTITVLFFG-GRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSR-NGSVR 700 (796)
Q Consensus 623 ~~~~i~~~f~G-G~ddreAL~~a~rma~~~~v~ltvv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~v~ 700 (796)
..++|++++.| .+.++.|+++|.++|++.+.+++++++.+..... .+..++..++.+++++..... ...+.
T Consensus 23 m~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~g~~~~ 95 (155)
T 3dlo_A 23 IYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRT-------KDEDIIEAKETLSWAVSIIRKEGAEGE 95 (155)
T ss_dssp CCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTS-------CHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred ccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcc-------cHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 46799999999 9999999999999999999999999998643211 111122234555555544321 22233
Q ss_pred EEEEEecChHHHHHHHHhcc--CCCEEEEccCCCchhhcccccCCCCCccccchhhhccCCCCceeEEEEe
Q 003770 701 YEERLVRNTAETIAVIREVS--RCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQ 769 (796)
Q Consensus 701 ~~e~~v~~~~~~~~~l~~~~--~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~SvLvvq 769 (796)
. +..+..|.-...+++..+ ++||+|+|+++ ..++.++ -+|-+.+-+...- . .+||||.
T Consensus 96 ~-~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g----~~~~~~~----~lGSv~~~vl~~a-~-~PVLvVr 155 (155)
T 3dlo_A 96 E-HLLVRGKEPPDDIVDFADEVDAIAIVIGIRK----RSPTGKL----IFGSVARDVILKA-N-KPVICIK 155 (155)
T ss_dssp E-EEEESSSCHHHHHHHHHHHTTCSEEEEECCE----ECTTSCE----ECCHHHHHHHHHC-S-SCEEEEC
T ss_pred E-EEEecCCCHHHHHHHHHHHcCCCEEEECCCC----CCCCCCE----EeccHHHHHHHhC-C-CCEEEeC
Confidence 2 223433333334444444 49999999987 2233322 2676666666521 1 5788773
No 26
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=98.11 E-value=2.1e-05 Score=72.67 Aligned_cols=130 Identities=12% Similarity=0.051 Sum_probs=75.9
Q ss_pred eEEEEeccCCcChHHHHHHHHHHh-cCCCeEEEEEEeeecccccCCc---cccCCcCcc-ccHHHHHHHHHhhcCCC-Cc
Q 003770 625 YTITVLFFGGRDDREALACGARMA-EHPGISFIVIRFLLAADAIGNT---VSVDMAGNA-SMDEEVLSEFKLKTSRN-GS 698 (796)
Q Consensus 625 ~~i~~~f~GG~ddreAL~~a~rma-~~~~v~ltvv~~~~~~~~~~~~---~~~~~~~~~-~~d~~~~~~~~~~~~~~-~~ 698 (796)
+||++++.|.++.+.|+++|.++| ++.+.+++++++.+........ .....+..+ +..++.+++++...... -+
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 81 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTEKGIN 81 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 699999999999999999999999 9999999999998653211000 000000001 22335566666554321 12
Q ss_pred eEEEEEEecChHHHHHHHHhccCCCEEEEccCCCchhhcccccCCCCCccccchhhhccCCCCceeEEEE
Q 003770 699 VRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLII 768 (796)
Q Consensus 699 v~~~e~~v~~~~~~~~~l~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~SvLvv 768 (796)
+. .+...++..+ .+++..+++||+|+|+++ ..++.+| +|-+.+-+...- . .+||||
T Consensus 82 ~~-~~v~~g~~~~--~I~~~a~~~dliV~G~~~----~~~~~~~-----~Gs~~~~vl~~~-~-~pVlvv 137 (138)
T 3idf_A 82 PF-VVIKEGEPVE--MVLEEAKDYNLLIIGSSE----NSFLNKI-----FASHQDDFIQKA-P-IPVLIV 137 (138)
T ss_dssp CE-EEEEESCHHH--HHHHHHTTCSEEEEECCT----TSTTSSC-----CCCTTCHHHHHC-S-SCEEEE
T ss_pred eE-EEEecCChHH--HHHHHHhcCCEEEEeCCC----cchHHHH-----hCcHHHHHHhcC-C-CCEEEe
Confidence 22 2222344443 334433369999999987 3333333 255555554421 1 477776
No 27
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=98.09 E-value=1.2e-05 Score=85.38 Aligned_cols=132 Identities=14% Similarity=0.139 Sum_probs=87.8
Q ss_pred cceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcc-hHHHHH
Q 003770 451 QFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPN-HIVVAF 529 (796)
Q Consensus 451 elriLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~af 529 (796)
..+|++|+++.+....+++.+..++.. ...+++++|+++...... . ..... ++. .++.+ .+.+.+
T Consensus 171 ~~~Ilv~~D~s~~s~~al~~a~~la~~---~~a~l~ll~v~~~~~~~~-~--------~~~~~-~~~-~~~~~~~l~~~~ 236 (309)
T 3cis_A 171 QAPVLVGVDGSSASELATAIAFDEASR---RNVDLVALHAWSDVDVSE-W--------PGIDW-PAT-QSMAEQVLAERL 236 (309)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHHHH---TTCCEEEEEESCSSCCTT-C--------SSCCH-HHH-HHHHHHHHHHHH
T ss_pred CCeEEEEeCCChHHHHHHHHHHHHHHh---cCCEEEEEEEeecccccC-C--------CcccH-HHH-HHHHHHHHHHHH
Confidence 358999999988888889888888754 456789999987432110 0 00000 000 00011 122222
Q ss_pred HHhhhc-cCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEE
Q 003770 530 EAFQQL-SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGIL 607 (796)
Q Consensus 530 ~~~~~~-~~v~v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgIl 607 (796)
+.+.+. .++.++..+..+ +..+.|++.|+ ++|+|+||.|++.+..+.+ +|++.++|++++||||.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~g---~~~~~I~~~a~--~adliV~G~~~~~~~~~~l------~Gsv~~~vl~~~~~pVlvv 304 (309)
T 3cis_A 237 AGWQERYPNVAITRVVVRD---QPARQLVQRSE--EAQLVVVGSRGRGGYAGML------VGSVGETVAQLARTPVIVA 304 (309)
T ss_dssp TTHHHHCTTSCEEEEEESS---CHHHHHHHHHT--TCSEEEEESSCSSCCTTCS------SCHHHHHHHHHCSSCEEEE
T ss_pred HHHHhhCCCCcEEEEEEcC---CHHHHHHHhhC--CCCEEEECCCCCCCccccc------cCcHHHHHHhcCCCCEEEe
Confidence 233222 467777766554 89999999997 8999999999887665544 7899999999999998763
No 28
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=98.07 E-value=6.2e-06 Score=77.07 Aligned_cols=132 Identities=15% Similarity=0.192 Sum_probs=76.5
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEeeeccc-cc-CC---c-cccC--CcCccccHHHHHHHHHhhcCC
Q 003770 624 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAAD-AI-GN---T-VSVD--MAGNASMDEEVLSEFKLKTSR 695 (796)
Q Consensus 624 ~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~~~~-~~-~~---~-~~~~--~~~~~~~d~~~~~~~~~~~~~ 695 (796)
.+||++++.|.++.+.|+++|.++|++.+.+++++++.+... .. .. . ...+ .+..++..++.+++++.....
T Consensus 2 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (147)
T 3hgm_A 2 FNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATE 81 (147)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 469999999999999999999999999999999999986432 00 00 0 0000 011112234556666554321
Q ss_pred -CCce---EEEEEEecChHHHHHHHHhcc--CCCEEEEccCCCchhhcccccCCCCCccccchhhhccCCCCceeEEEE
Q 003770 696 -NGSV---RYEERLVRNTAETIAVIREVS--RCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLII 768 (796)
Q Consensus 696 -~~~v---~~~e~~v~~~~~~~~~l~~~~--~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~SvLvv 768 (796)
+-++ . .+...++..+ .+++... ++||+|+|+++ ..++.+| -+|-..+-+...- . .+||||
T Consensus 82 ~g~~~~~~~-~~~~~g~~~~--~I~~~a~~~~~dliV~G~~~----~~~~~~~----~~Gs~~~~vl~~~-~-~pVlvV 147 (147)
T 3hgm_A 82 LGVPADKVR-AFVKGGRPSR--TIVRFARKRECDLVVIGAQG----TNGDKSL----LLGSVAQRVAGSA-H-CPVLVV 147 (147)
T ss_dssp TTCCGGGEE-EEEEESCHHH--HHHHHHHHTTCSEEEECSSC----TTCCSCC----CCCHHHHHHHHHC-S-SCEEEC
T ss_pred cCCCccceE-EEEecCCHHH--HHHHHHHHhCCCEEEEeCCC----Cccccce----eeccHHHHHHhhC-C-CCEEEC
Confidence 1112 3 2233344444 3444443 49999999987 3333332 2566555555421 1 466664
No 29
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=98.01 E-value=1.8e-05 Score=75.76 Aligned_cols=137 Identities=20% Similarity=0.198 Sum_probs=79.1
Q ss_pred CcceEEEEeccCCcChHHHHHHHHHHhcCCCeEEEEE--Eeeecccc-cC-Ccccc-CCcCccccHHHHHHHHHhhcCCC
Q 003770 622 NVSYTITVLFFGGRDDREALACGARMAEHPGISFIVI--RFLLAADA-IG-NTVSV-DMAGNASMDEEVLSEFKLKTSRN 696 (796)
Q Consensus 622 ~~~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv--~~~~~~~~-~~-~~~~~-~~~~~~~~d~~~~~~~~~~~~~~ 696 (796)
...+||++++.|.+..+.|+++|.++|+ .+.+++++ ++.+.... .. ..... -.+..++..++.+++++......
T Consensus 15 ~~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 93 (163)
T 1tq8_A 15 SAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNA 93 (163)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTT
T ss_pred ccCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3467999999999999999999999999 99999999 87653221 00 00000 00112233456666666554322
Q ss_pred CceE-EEEEEecChHHHHHHHHhc--cCCCEEEEccCCCchhhcccccCCCCCccccchhhhccCCCCceeEEEEeee
Q 003770 697 GSVR-YEERLVRNTAETIAVIREV--SRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQQY 771 (796)
Q Consensus 697 ~~v~-~~e~~v~~~~~~~~~l~~~--~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~SvLvvqq~ 771 (796)
.+. +..+ +..|.-...+++.. .++||+|+|+++ ..++.+| -+|-+.+-+...- . .+||||...
T Consensus 94 -gv~~v~~~-v~~G~~~~~I~~~a~~~~~DLIV~G~~g----~~~~~~~----~lGSva~~vl~~a-~-~PVlvV~~~ 159 (163)
T 1tq8_A 94 -GAKNVEER-PIVGAPVDALVNLADEEKADLLVVGNVG----LSTIAGR----LLGSVPANVSRRA-K-VDVLIVHTT 159 (163)
T ss_dssp -TCCEEEEE-EECSSHHHHHHHHHHHTTCSEEEEECCC----CCSHHHH----HTBBHHHHHHHHT-T-CEEEEECCC
T ss_pred -CCCeEEEE-EecCCHHHHHHHHHHhcCCCEEEECCCC----CCcccce----eeccHHHHHHHhC-C-CCEEEEeCC
Confidence 122 2222 22333233344433 239999999997 2333332 2677777776532 2 599999743
No 30
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=97.98 E-value=1.9e-05 Score=75.14 Aligned_cols=135 Identities=12% Similarity=0.087 Sum_probs=80.8
Q ss_pred cceEEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEeeecc-----cc-cCC-cc--c-cCC-----cCc---cccHHH
Q 003770 623 VSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAA-----DA-IGN-TV--S-VDM-----AGN---ASMDEE 684 (796)
Q Consensus 623 ~~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~~~-----~~-~~~-~~--~-~~~-----~~~---~~~d~~ 684 (796)
..+||++++.|.++.+.|+++|.++|+..+.+++++++.+.. .. ... .. . ..+ +.+ ++..++
T Consensus 4 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (162)
T 1mjh_A 4 MYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKN 83 (162)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999999998653 10 000 00 0 000 000 111234
Q ss_pred HHHHHHhhcCCCCceEEEE-EEecChHHHHHHHHhcc--CCCEEEEccCCCchhhcccccCCCCCccccchhhhccCCCC
Q 003770 685 VLSEFKLKTSRNGSVRYEE-RLVRNTAETIAVIREVS--RCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFS 761 (796)
Q Consensus 685 ~~~~~~~~~~~~~~v~~~e-~~v~~~~~~~~~l~~~~--~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~ 761 (796)
.+++++..... ..+.+.. ...++..+. +++..+ ++||+|+|+++ ..++.+| -+|-+.+-+...- .
T Consensus 84 ~l~~~~~~~~~-~g~~~~~~v~~G~~~~~--I~~~a~~~~~dlIV~G~~g----~~~~~~~----~~GSv~~~vl~~~-~ 151 (162)
T 1mjh_A 84 KMENIKKELED-VGFKVKDIIVVGIPHEE--IVKIAEDEGVDIIIMGSHG----KTNLKEI----LLGSVTENVIKKS-N 151 (162)
T ss_dssp HHHHHHHHHHH-TTCEEEEEEEEECHHHH--HHHHHHHTTCSEEEEESCC----SSCCTTC----SSCHHHHHHHHHC-C
T ss_pred HHHHHHHHHHH-cCCceEEEEcCCCHHHH--HHHHHHHcCCCEEEEcCCC----CCCccce----EecchHHHHHHhC-C
Confidence 55565554321 1233222 223444443 334333 49999999997 3344433 3788887777632 2
Q ss_pred ceeEEEEee
Q 003770 762 TASVLIIQQ 770 (796)
Q Consensus 762 ~~SvLvvqq 770 (796)
.+||||..
T Consensus 152 -~pVlvv~~ 159 (162)
T 1mjh_A 152 -KPVLVVKR 159 (162)
T ss_dssp -SCEEEECC
T ss_pred -CCEEEEeC
Confidence 59999964
No 31
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=97.97 E-value=1.7e-05 Score=76.33 Aligned_cols=136 Identities=11% Similarity=-0.026 Sum_probs=80.8
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEeeecccccCCc---c-------ccCCcCc---cccHHHHHHHHH
Q 003770 624 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNT---V-------SVDMAGN---ASMDEEVLSEFK 690 (796)
Q Consensus 624 ~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~~~~~~~~~---~-------~~~~~~~---~~~d~~~~~~~~ 690 (796)
.+||++++.|.++++.|+++|.++|++.+.+|+++++.+........ . ...++.. ++..++.++++.
T Consensus 5 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (170)
T 2dum_A 5 FRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKA 84 (170)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred cceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999998643211000 0 0000110 112234555555
Q ss_pred hhcCC-CCceEE-EEEEecChHHHHHHHHhcc--CCCEEEEccCCCchhhcccccCCCCCccccchhhhccCCCCceeEE
Q 003770 691 LKTSR-NGSVRY-EERLVRNTAETIAVIREVS--RCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVL 766 (796)
Q Consensus 691 ~~~~~-~~~v~~-~e~~v~~~~~~~~~l~~~~--~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~SvL 766 (796)
..... +-++.. .....++..+ .+++..+ ++||+|+|+++ ..++.++ -+|-+.+-+...- . .+||
T Consensus 85 ~~~~~~g~~~~~~~~~~~g~~~~--~I~~~a~~~~~DlIV~G~~g----~~~~~~~----~~Gsv~~~vl~~~-~-~PVl 152 (170)
T 2dum_A 85 EEVKRAFRAKNVRTIIRFGIPWD--EIVKVAEEENVSLIILPSRG----KLSLSHE----FLGSTVMRVLRKT-K-KPVL 152 (170)
T ss_dssp HHHHHHTTCSEEEEEEEEECHHH--HHHHHHHHTTCSEEEEESCC----CCC--TT----CCCHHHHHHHHHC-S-SCEE
T ss_pred HHHHHcCCceeeeeEEecCChHH--HHHHHHHHcCCCEEEECCCC----CCccccc----eechHHHHHHHhC-C-CCEE
Confidence 54311 122333 1222344443 3344333 49999999997 3334332 3787777776531 2 6999
Q ss_pred EEeee
Q 003770 767 IIQQY 771 (796)
Q Consensus 767 vvqq~ 771 (796)
||...
T Consensus 153 vv~~~ 157 (170)
T 2dum_A 153 IIKEV 157 (170)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99754
No 32
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=97.93 E-value=5e-06 Score=78.11 Aligned_cols=134 Identities=16% Similarity=0.117 Sum_probs=77.2
Q ss_pred cceEEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEeeecccc---cCCcccc--CCcCc---cccHHHHHHHHHhhcC
Q 003770 623 VSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADA---IGNTVSV--DMAGN---ASMDEEVLSEFKLKTS 694 (796)
Q Consensus 623 ~~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~~~~~---~~~~~~~--~~~~~---~~~d~~~~~~~~~~~~ 694 (796)
..+||++++.|.++.+.|+++|.++|++.+.+++++++.+.... ....... .++.. ++..++.++++..+..
T Consensus 5 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 84 (150)
T 3tnj_A 5 VYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLG 84 (150)
T ss_dssp CCSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 35799999999999999999999999999999999999864321 0000000 00111 1222355666655542
Q ss_pred CCCceEEEEEEecChHHHHHHHHhcc--CCCEEEEccCCCchhhcccccCCCCCccccchhhhccCCCCceeEEEEeee
Q 003770 695 RNGSVRYEERLVRNTAETIAVIREVS--RCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQQY 771 (796)
Q Consensus 695 ~~~~v~~~e~~v~~~~~~~~~l~~~~--~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~SvLvvqq~ 771 (796)
. ..+.. +...++..+ .+++... ++||+|+|+++ ..++. | -+|-+.+-+...- . .+||||...
T Consensus 85 ~-~~~~~-~~~~g~~~~--~I~~~a~~~~~dliV~G~~~----~~~~~-~----~~Gs~~~~vl~~~-~-~pVlvv~~~ 148 (150)
T 3tnj_A 85 I-DPAHR-WLVWGEPRE--EIIRIAEQENVDLIVVGSHG----RHGLA-L----LLGSTANSVLHYA-K-CDVLAVRLR 148 (150)
T ss_dssp C-CGGGE-EEEESCHHH--HHHHHHHHTTCSEEEEEEC-----------------CCCHHHHHHHHC-S-SEEEEEECC
T ss_pred C-CcceE-EEecCCHHH--HHHHHHHHcCCCEEEEecCC----CCCcC-e----EecchHHHHHHhC-C-CCEEEEeCC
Confidence 2 21211 223345444 3444443 49999999987 22332 2 3777777766532 2 599998753
No 33
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=97.92 E-value=2.3e-05 Score=72.38 Aligned_cols=131 Identities=21% Similarity=0.178 Sum_probs=76.8
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEeeecccccCCccccCC--cCccccHHHHHHHHHhhcCCCCceEE
Q 003770 624 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDM--AGNASMDEEVLSEFKLKTSRNGSVRY 701 (796)
Q Consensus 624 ~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~v~~ 701 (796)
.+||++++.|.++++.|+++|.++|+..+.+++++++.+......+....++ +..++..++.++++..+. +-+++.+
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~ 80 (137)
T 2z08_A 2 FKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARALT-GVPKEDA 80 (137)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHHH-CCCGGGE
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHHc-CCCccEE
Confidence 4699999999999999999999999999999999999863211000000000 011122335566665542 1102333
Q ss_pred EEEEecChHHHHHHHHhcc--CCCEEEEccCCCchhhcccccCCCCCccccchhhhccCCCCceeEEEE
Q 003770 702 EERLVRNTAETIAVIREVS--RCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLII 768 (796)
Q Consensus 702 ~e~~v~~~~~~~~~l~~~~--~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~SvLvv 768 (796)
. ...++..+ .+++..+ ++||+|+|+++ ..++.++ -+|-+.+-+...- . .+||||
T Consensus 81 ~-~~~g~~~~--~I~~~a~~~~~dliV~G~~~----~~~~~~~----~~Gs~~~~vl~~~-~-~pVlvv 136 (137)
T 2z08_A 81 L-LLEGVPAE--AILQAARAEKADLIVMGTRG----LGALGSL----FLGSQSQRVVAEA-P-CPVLLV 136 (137)
T ss_dssp E-EEESSHHH--HHHHHHHHTTCSEEEEESSC----TTCCSCS----SSCHHHHHHHHHC-S-SCEEEE
T ss_pred E-EEecCHHH--HHHHHHHHcCCCEEEECCCC----Cchhhhh----hhccHHHHHHhcC-C-CCEEEe
Confidence 2 22344444 3344333 49999999997 3333332 3677777666531 2 588887
No 34
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=97.84 E-value=2.5e-05 Score=72.59 Aligned_cols=130 Identities=12% Similarity=0.139 Sum_probs=73.2
Q ss_pred eEEEEeccCCcC--hHHHHHHHHHHhcCCCeEEEEEEeeecccccCCc--ccc-CCcCccccHHHH---HHHHHhhcCCC
Q 003770 625 YTITVLFFGGRD--DREALACGARMAEHPGISFIVIRFLLAADAIGNT--VSV-DMAGNASMDEEV---LSEFKLKTSRN 696 (796)
Q Consensus 625 ~~i~~~f~GG~d--dreAL~~a~rma~~~~v~ltvv~~~~~~~~~~~~--~~~-~~~~~~~~d~~~---~~~~~~~~~~~ 696 (796)
+||++++.|.++ ++.|+++|.++|++.+.+++++++.+........ ... ..+..++..++. ++++..+....
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSIP 81 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCCC
Confidence 599999999999 9999999999999999999999998653211000 000 001111122223 33333333211
Q ss_pred -CceEEEEEEecChHHHHHHHHhcc--CCCEEEEccCCCchhhcccccCCCCCccccchhhhccCCCCceeEEEE
Q 003770 697 -GSVRYEERLVRNTAETIAVIREVS--RCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLII 768 (796)
Q Consensus 697 -~~v~~~e~~v~~~~~~~~~l~~~~--~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~SvLvv 768 (796)
.++.+. ...++..+. +++..+ ++||+|+|+++ + |+.+| -+|-+.+-+...- . .+||||
T Consensus 82 ~~~v~~~-~~~g~~~~~--I~~~a~~~~~dliV~G~~~-~----~~~~~----~~Gs~~~~v~~~~-~-~pVlvv 142 (143)
T 3fdx_A 82 EDRMHFH-VAEGSPKDK--ILALAKSLPADLVIIASHR-P----DITTY----LLGSNAAAVVRHA-E-CSVLVV 142 (143)
T ss_dssp GGGEEEE-EEESCHHHH--HHHHHHHTTCSEEEEESSC-T----TCCSC----SSCHHHHHHHHHC-S-SEEEEE
T ss_pred CCceEEE-EEecChHHH--HHHHHHHhCCCEEEEeCCC-C----CCeee----eeccHHHHHHHhC-C-CCEEEe
Confidence 123322 233444443 333333 49999999985 2 22222 3677776666521 1 578876
No 35
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=97.83 E-value=1.6e-05 Score=75.21 Aligned_cols=133 Identities=15% Similarity=0.181 Sum_probs=78.5
Q ss_pred CcceEEEEecc--CCcChHHHHHHHHHHhcCCCeEEEEEEeeecccccCCccccC--CcCccccHHHHHHHHHhhcCCCC
Q 003770 622 NVSYTITVLFF--GGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVD--MAGNASMDEEVLSEFKLKTSRNG 697 (796)
Q Consensus 622 ~~~~~i~~~f~--GG~ddreAL~~a~rma~~~~v~ltvv~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~ 697 (796)
...+||++++. |.++.+.|+++|.++|++.+.+++++++.+............ .+..++..++.+++++......+
T Consensus 13 ~~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g 92 (156)
T 3fg9_A 13 LVYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQRG 92 (156)
T ss_dssp CCCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 35679999999 999999999999999999999999999986532110000000 01111223355555554432111
Q ss_pred --ceEEEEEEe-cChHHHHHHHHh-c--cCCCEEEEccCCCchhhcccccCCCCCccccchhhhccCCCCceeEEEE
Q 003770 698 --SVRYEERLV-RNTAETIAVIRE-V--SRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLII 768 (796)
Q Consensus 698 --~v~~~e~~v-~~~~~~~~~l~~-~--~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~SvLvv 768 (796)
.+.+. ... ++..+ .+++. . .++||+|+|+++ ..++. . -+|-+.+-+...- . .+||||
T Consensus 93 ~~~~~~~-v~~~g~~~~--~I~~~~a~~~~~DlIV~G~~g----~~~~~----~-~~Gs~~~~vl~~a-~-~PVlvV 155 (156)
T 3fg9_A 93 VNQVEPL-VYEGGDVDD--VILEQVIPEFKPDLLVTGADT----EFPHS----K-IAGAIGPRLARKA-P-ISVIVV 155 (156)
T ss_dssp CSSEEEE-EEECSCHHH--HHHHTHHHHHCCSEEEEETTC----CCTTS----S-SCSCHHHHHHHHC-S-SEEEEE
T ss_pred CCceEEE-EEeCCCHHH--HHHHHHHHhcCCCEEEECCCC----CCccc----e-eecchHHHHHHhC-C-CCEEEe
Confidence 23222 222 34433 44444 3 239999999997 23332 2 3787777776531 2 588887
No 36
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=97.74 E-value=4.4e-05 Score=70.52 Aligned_cols=40 Identities=18% Similarity=0.157 Sum_probs=37.6
Q ss_pred cceEEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEee-e
Q 003770 623 VSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFL-L 662 (796)
Q Consensus 623 ~~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~-~ 662 (796)
..+||++++.|.++++.|+++|.++|+..+.+++++++. +
T Consensus 3 ~~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~ 43 (138)
T 1q77_A 3 AMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLED 43 (138)
T ss_dssp CCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHH
T ss_pred cccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecc
Confidence 457999999999999999999999999999999999998 5
No 37
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=97.70 E-value=3.9e-05 Score=79.57 Aligned_cols=113 Identities=15% Similarity=0.159 Sum_probs=80.3
Q ss_pred ceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHH
Q 003770 452 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEA 531 (796)
Q Consensus 452 lriLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 531 (796)
.+|++|+++.+....+++.+..++.. ...+++++|+.+..+ + .++.++.+.+
T Consensus 155 ~~ilv~~d~s~~~~~al~~a~~la~~---~~a~l~ll~v~~~~~---------~----------------~~~~l~~~~~ 206 (268)
T 3ab8_A 155 EGALLGYDASESAVRALHALAPLARA---LGLGVRVVSVHEDPA---------R----------------AEAWALEAEA 206 (268)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHH---HTCCEEEEEECSSHH---------H----------------HHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHhhhc---CCCEEEEEEEcCcHH---------H----------------HHHHHHHHHH
Confidence 58999999988888888888777643 345689999985321 0 0122333334
Q ss_pred hhhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEE
Q 003770 532 FQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGIL 607 (796)
Q Consensus 532 ~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgIl 607 (796)
+.+..++.++..+.- .+..+.|.+.|++. |+|+||. +..+.+ +|++.++|++++||||.++
T Consensus 207 ~l~~~~~~~~~~~~~---g~~~~~i~~~a~~~--dliV~G~----~~~~~~------~Gs~~~~vl~~~~~pvlvv 267 (268)
T 3ab8_A 207 YLRDHGVEASALVLG---GDAADHLLRLQGPG--DLLALGA----PVRRLV------FGSTAERVIRNAQGPVLTA 267 (268)
T ss_dssp HHHHTTCCEEEEEEC---SCHHHHHHHHCCTT--EEEEEEC----CCSCCS------SCCHHHHHHHHCSSCEEEE
T ss_pred HHHHcCCceEEEEeC---CChHHHHHHHHHhC--CEEEECC----cccccE------eccHHHHHHhcCCCCEEEe
Confidence 433456777765544 48999999999999 9999998 222333 6788999999999998663
No 38
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.68 E-value=0.048 Score=58.18 Aligned_cols=109 Identities=18% Similarity=0.100 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhhccCchhHHhcch---hHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHH-hhcc
Q 003770 96 LANLGLIFFMFLVGLELDPKSLRQTGK---KALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVAL-SITA 171 (796)
Q Consensus 96 l~~lgl~~~lF~~Gle~d~~~l~~~~~---~~~~ia~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~l-s~Ts 171 (796)
.....+.+.||..|++++.+++++..| ......+..+++--+++++++..+.. +. .....+.+-.+. +.++
T Consensus 44 ~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l----~~-~~~~Glil~~~~P~~~~ 118 (332)
T 3zux_A 44 YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNL----PA-EIAVGVILVGCCPGGTA 118 (332)
T ss_dssp GHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTC----CH-HHHHHHHHHHHSCCCTH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCC----Ch-HHHHHHHHHhcCCchhH
Confidence 445678899999999999999995443 33333333443322344444444421 11 111122221111 2222
Q ss_pred HHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003770 172 FPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSG 216 (796)
Q Consensus 172 ~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~ 216 (796)
.. +++.+- +.+ ..++.+...++.+++.+.+-+...+..
T Consensus 119 s~----v~t~~a--~Gd-~~la~~~~~~stll~~~~~Pl~~~l~~ 156 (332)
T 3zux_A 119 SN----VMTYLA--RGN-VALSVAVTSVSTLTSPLLTPAIFLMLA 156 (332)
T ss_dssp HH----HHHHHT--TCC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH----HHHHHh--CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 22 233322 223 356777788888888887766655443
No 39
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=97.58 E-value=0.00023 Score=65.79 Aligned_cols=132 Identities=11% Similarity=0.055 Sum_probs=76.5
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEeeec-ccccCCcc--cc--CCcCccccHHHHHHHHHhhcCCCCc
Q 003770 624 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLA-ADAIGNTV--SV--DMAGNASMDEEVLSEFKLKTSRNGS 698 (796)
Q Consensus 624 ~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~~-~~~~~~~~--~~--~~~~~~~~d~~~~~~~~~~~~~~~~ 698 (796)
.++|++++.|.++++.|+++|.++|+..+.+++++++.+. ........ .. ..+..++..++.++++..+... +
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~- 79 (141)
T 1jmv_A 2 YKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDY-P- 79 (141)
T ss_dssp CSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHSSS-C-
T ss_pred CceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHHHHcCC-C-
Confidence 4699999999999999999999999999999999999843 11000000 00 0011122234566666655421 1
Q ss_pred eEEEEEEecChHHHHHHHHhccCCCEEEEccCCCchhhcccccCCCCCccccchhhhccCCCCceeEEEEee
Q 003770 699 VRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQQ 770 (796)
Q Consensus 699 v~~~e~~v~~~~~~~~~l~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~SvLvvqq 770 (796)
+.......++..+.+....+-.++||+|+|++ .+. +. .+|-+.+-+...- . .+||||..
T Consensus 80 ~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~-~~~----~~------~lgs~~~~vl~~~-~-~pVlvv~~ 138 (141)
T 1jmv_A 80 ISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH-QDF----WS------KLMSSTRQVMNTI-K-IDMLVVPL 138 (141)
T ss_dssp CCCEEEEEECHHHHHHHHHHHTTCCEEEEEEC-CCC----HH------HHHHHHHHHHTTC-C-SEEEEEEC
T ss_pred ceEEEEecCCHHHHHHHHHHhcCCCEEEEeCC-Cch----hh------hhcchHHHHHhcC-C-CCEEEeeC
Confidence 11112223454443222222223999999988 332 21 1466666665421 2 69999964
No 40
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=97.52 E-value=0.0005 Score=66.21 Aligned_cols=136 Identities=13% Similarity=0.140 Sum_probs=73.6
Q ss_pred cceEEEEeccCCc---------ChHHHHHHHHHHh-cC--CCeEEEEEEeeecccccCC---cccc-----CC--cCccc
Q 003770 623 VSYTITVLFFGGR---------DDREALACGARMA-EH--PGISFIVIRFLLAADAIGN---TVSV-----DM--AGNAS 680 (796)
Q Consensus 623 ~~~~i~~~f~GG~---------ddreAL~~a~rma-~~--~~v~ltvv~~~~~~~~~~~---~~~~-----~~--~~~~~ 680 (796)
..+||++++.|.+ .++.|+++|.+++ +. .+.+|+++++.+....... .... ++ +..++
T Consensus 4 ~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (175)
T 2gm3_A 4 EPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKA 83 (175)
T ss_dssp -CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHH
T ss_pred CccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHH
Confidence 3579999999999 8899999999987 44 6999999999743211000 0000 00 00111
Q ss_pred cHHHHHHHHHhhcCCCCceEEEE-EEecChHHHHHHHHhcc--CCCEEEEccCCCchhhcccccCCCCCccccchhhhcc
Q 003770 681 MDEEVLSEFKLKTSRNGSVRYEE-RLVRNTAETIAVIREVS--RCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTS 757 (796)
Q Consensus 681 ~d~~~~~~~~~~~~~~~~v~~~e-~~v~~~~~~~~~l~~~~--~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~igd~las 757 (796)
..++.++++...... ..+.+.. ...++..+ .+++... ++||+|+|+++ ..++.+| -+|-+.+-+..
T Consensus 84 ~~~~~l~~~~~~~~~-~g~~~~~~v~~G~~~~--~I~~~a~~~~~DLIVmG~~g----~~~~~~~----~~Gsva~~vl~ 152 (175)
T 2gm3_A 84 KGLHLLEFFVNKCHE-IGVGCEAWIKTGDPKD--VICQEVKRVRPDFLVVGSRG----LGRFQKV----FVGTVSAFCVK 152 (175)
T ss_dssp HHHHHHHHHHHHHHH-HTCEEEEEEEESCHHH--HHHHHHHHHCCSEEEEEECC----CC------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-CCCceEEEEecCCHHH--HHHHHHHHhCCCEEEEeCCC----CChhhhh----hcCchHHHHHh
Confidence 123556666554321 1133322 22234333 3444443 39999999997 3344433 37777777765
Q ss_pred CCCCceeEEEEeee
Q 003770 758 LEFSTASVLIIQQY 771 (796)
Q Consensus 758 ~d~~~~SvLvvqq~ 771 (796)
.- . .+||||...
T Consensus 153 ~a-~-~pVlvv~~~ 164 (175)
T 2gm3_A 153 HA-E-CPVMTIKRN 164 (175)
T ss_dssp HC-S-SCEEEEECC
T ss_pred CC-C-CCEEEEcCC
Confidence 32 2 599999754
No 41
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=95.48 E-value=0.4 Score=49.12 Aligned_cols=217 Identities=14% Similarity=0.112 Sum_probs=139.1
Q ss_pred eEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCC-cchHHHHHHH
Q 003770 453 RILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSN-PNHIVVAFEA 531 (796)
Q Consensus 453 riLv~v~~~~~~~~li~ll~~~~~~~~~~p~~v~~lhlvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~af~~ 531 (796)
++|++...|..-.+++.++..+... ...+.+.+++.-..+ +. .++ +.++++
T Consensus 22 ~iLV~sg~p~~~~~li~la~~lt~~----~G~ltv~~i~p~~~~-----------------------~~l~~q-l~~l~~ 73 (294)
T 3g40_A 22 NLLVPVEDPRELMGTFDFLRDITYP----KGSVKLLGLAGNTDK-----------------------ENLLSQ-LPSISE 73 (294)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHTT----TCEEEEEECC---CT-----------------------TCHHHH-HHHHHH
T ss_pred cEEEecCCchhhhhHHHHHHHhccC----ceeEEEEEEccCCCc-----------------------cHHHHH-HHHHHH
Confidence 7999999999999999999999864 355787777521111 11 223 377788
Q ss_pred hhhccCeEEEEeEEecCCCChHHHHHHHHHhc-----CccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEE
Q 003770 532 FQQLSRVSVRPMTAISSMSDMHEDICTTAESK-----RAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 606 (796)
Q Consensus 532 ~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~-----~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgI 606 (796)
|-++.++..-..+..+ .+..+++-...+.. +.+.|+|+|..+.. ....++.+.+.. +++.-.|-|
T Consensus 74 ~l~~r~v~a~~~vi~a--~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e-------~~~~y~~~i~~~-~~~~~nVli 143 (294)
T 3g40_A 74 GFQEEGVFSSWTIIDT--AEFEENLVVGMEALTGSFFRPSILFLRLPENRD-------RDEEIREIIRKA-SMYRMGVLL 143 (294)
T ss_dssp HHHHTTCEEEEEEC-------CHHHHHHHHHHTTCSSCSCEEEEECCSSGG-------GHHHHHHHHHHH-HHTTCEEEE
T ss_pred HHHhCCceeEEEEEec--CChhHHHHHHHHHcCCCCCCCCEEEeCCCCChh-------hhHHHHHHHHHH-HHhCceEEE
Confidence 8887777766655555 47888998888874 57999999965431 233578888665 455777777
Q ss_pred EecCCCCCCcccccCCcceEEEEeccC--------C--cChHHHHHHHHHHhcCCCeEEEEEEeeecccccCCccccCCc
Q 003770 607 LIDRGLGGTTQVSASNVSYTITVLFFG--------G--RDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMA 676 (796)
Q Consensus 607 lvdrg~~~~~~~~~~~~~~~i~~~f~G--------G--~ddreAL~~a~rma~~~~v~ltvv~~~~~~~~~~~~~~~~~~ 676 (796)
|-+....+ ....++|=+=..| | .+-..++-+|-.+.++.++++.++.+++.++
T Consensus 144 l~~~~~~~------fg~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~de~----------- 206 (294)
T 3g40_A 144 FSKHPQAG------LGRQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPTAI----------- 206 (294)
T ss_dssp EECCTTTT------TTTSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSSHH-----------
T ss_pred EecCCccC------CCCCceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCCHH-----------
Confidence 75432111 1123455554333 2 3445788899999999999999999986332
Q ss_pred CccccHHHHHHHHHhhcCCCCceEEEEEEecChHHHHHHHHhccCCCEEEEccCC
Q 003770 677 GNASMDEEVLSEFKLKTSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMP 731 (796)
Q Consensus 677 ~~~~~d~~~~~~~~~~~~~~~~v~~~e~~v~~~~~~~~~l~~~~~~DL~iVGr~~ 731 (796)
+++..+.+++++.+...-... .+ + |. .+..+++++....||+++|-..
T Consensus 207 -a~~~a~~~l~~Lv~~~Ri~a~-~~--v-v~--~~F~~il~~s~~ADL~flGl~~ 254 (294)
T 3g40_A 207 -QAQAAENFLQSLAELARIPNV-KM--Q-VL--RENPIKSSKLPFASLHIFSLDP 254 (294)
T ss_dssp -HHHHHHHHHHHHHHHHTCCSC-EE--E-EE--SSCTTTSSSCCCCSEEEEECCS
T ss_pred -HHHHHHHHHHHHHHHhcCCce-EE--E-ec--CchHHHHhhCcCCCEEEEcCCC
Confidence 234446777777766532222 22 2 22 3344577776449999999976
No 42
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=73.13 E-value=48 Score=34.74 Aligned_cols=126 Identities=10% Similarity=0.154 Sum_probs=66.5
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 003770 290 FVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGL-QSWGLLALVILTACLGKIVGTFVVSLSFKV 368 (796)
Q Consensus 290 fvaGl~l~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~-~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~ 368 (796)
.+.|...|..... ++... ...+.+-+...|++++..++... ..+.......+.-++...+.++..++.++.
T Consensus 28 ~~lg~~~P~~~~~-------~~~~i-~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l 99 (332)
T 3zux_A 28 AAAAFFAPDTFKW-------AGPYI-PWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNL 99 (332)
T ss_dssp HHHHHHCGGGTGG-------GGGGH-HHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcchhhhh-------hHHHH-HHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4667777742111 22333 35666778889999998877632 234434444555666677777877877777
Q ss_pred ChHHHHHHHHH-hhhhHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHHhHHHHHHHHh
Q 003770 369 PLREALALGIL-MNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVY 427 (796)
Q Consensus 369 ~~~e~~~lgl~-l~~kG~~~l~l~~~~~~~~~i~~~~~~~lvl~~lv~t~i~~pl~~~l~ 427 (796)
+.....-+-+. ..|-|..+.+....+. | |.+.-..++....+.+.++.|+...++
T Consensus 100 ~~~~~~Glil~~~~P~~~~s~v~t~~a~--G--d~~la~~~~~~stll~~~~~Pl~~~l~ 155 (332)
T 3zux_A 100 PAEIAVGVILVGCCPGGTASNVMTYLAR--G--NVALSVAVTSVSTLTSPLLTPAIFLML 155 (332)
T ss_dssp CHHHHHHHHHHHHSCCCTHHHHHHHHTT--C--CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHhcCCchhHHHHHHHHhC--C--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65433322222 2344444444332222 1 333333333333444555667666655
No 43
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=67.78 E-value=11 Score=37.93 Aligned_cols=90 Identities=16% Similarity=0.144 Sum_probs=54.8
Q ss_pred CCcChHHHHHHHHHHhcCCCe--EEEEEEeeecccccCCccccCCcCccccHHHHHHHHHhhcCCCCceEEEE-EE----
Q 003770 633 GGRDDREALACGARMAEHPGI--SFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEE-RL---- 705 (796)
Q Consensus 633 GG~ddreAL~~a~rma~~~~v--~ltvv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~~~e-~~---- 705 (796)
=.|.|.+|++.|.|+++. +. +++++.+-+.. .++.+++.... +-+++...+ --
T Consensus 35 lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~-----------------a~~~lr~ala~--GaD~vi~v~~d~~~~~ 94 (252)
T 1efp_B 35 MNPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVKQ-----------------AAETLRTALAM--GADRAILVVAADDVQQ 94 (252)
T ss_dssp ECHHHHHHHHHHHHHHTT-TSCSEEEEEEEESGG-----------------GHHHHHHHHHH--TCSEEEEEECCSSTTC
T ss_pred CCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh-----------------HHHHHHHHHhc--CCCEEEEEecChhhcc
Confidence 358899999999999987 55 88888876422 13344444333 334454443 11
Q ss_pred ecChHHHHHHHHhc---cCCCEEEEccCC---C----chhhcccccC
Q 003770 706 VRNTAETIAVIREV---SRCNLLLVGRMP---D----GELALALSTR 742 (796)
Q Consensus 706 v~~~~~~~~~l~~~---~~~DL~iVGr~~---~----~~~~~gl~~w 742 (796)
-.+...+..++.++ .+|||++.|++. + .|+.+.+-+|
T Consensus 95 ~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~ 141 (252)
T 1efp_B 95 DIEPLAVAKILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGW 141 (252)
T ss_dssp CCCHHHHHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCC
Confidence 12344555555443 239999999986 1 3455555555
No 44
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=66.00 E-value=10 Score=39.86 Aligned_cols=56 Identities=11% Similarity=-0.015 Sum_probs=40.7
Q ss_pred eEEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEeeecccccCCccccCCcCccccHHHHHHHHHhhc
Q 003770 625 YTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKT 693 (796)
Q Consensus 625 ~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 693 (796)
.++++.|.||+|+--.|.++.+.....+.++.++++.+.-. ...+.++++++.+++
T Consensus 47 ~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~-------------~~et~~~v~~~~~~~ 102 (325)
T 1zun_A 47 DNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWK-------------FQEMYRFRDQMVEEM 102 (325)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCC-------------CHHHHHHHHHHHHTT
T ss_pred CCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCC-------------CHHHHHHHHHHHHHc
Confidence 37899999999999999999998765455677787743221 122457777777765
No 45
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=65.51 E-value=11 Score=38.20 Aligned_cols=92 Identities=14% Similarity=0.111 Sum_probs=55.1
Q ss_pred ccCCcChHHHHHHHHHHhcCCCe--EEEEEEeeecccccCCccccCCcCccccHHHHHHHHHhhcCCCCceEEEE-EE--
Q 003770 631 FFGGRDDREALACGARMAEHPGI--SFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEE-RL-- 705 (796)
Q Consensus 631 f~GG~ddreAL~~a~rma~~~~v--~ltvv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~~~e-~~-- 705 (796)
+.=.|.|.+|++.|.|+++. +. +++++.+-+.. .++.+++.... +-+++...+ --
T Consensus 36 ~~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~-----------------a~~~lr~ala~--GaD~vi~v~~d~~~ 95 (255)
T 1efv_B 36 HSMNPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPAQ-----------------CQETIRTALAM--GADRGIHVEVPPAE 95 (255)
T ss_dssp EEECHHHHHHHHHHHHHHHT-TSCSEEEEEEEESTT-----------------HHHHHHHHHHH--TCSEEEEEECCHHH
T ss_pred ccCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh-----------------HHHHHHHHHhc--CCCEEEEEecChhh
Confidence 33358899999999999987 55 88888876421 13444444333 334444443 11
Q ss_pred --ecChHHHHHHHHhc---cCCCEEEEccCC---C----chhhcccccC
Q 003770 706 --VRNTAETIAVIREV---SRCNLLLVGRMP---D----GELALALSTR 742 (796)
Q Consensus 706 --v~~~~~~~~~l~~~---~~~DL~iVGr~~---~----~~~~~gl~~w 742 (796)
-.+...+..++.+. .+||+++.|++. + .|..+.+-+|
T Consensus 96 ~~~~~~~~~A~~La~~i~~~~~dlVl~G~~s~d~d~~~v~p~lA~~L~~ 144 (255)
T 1efv_B 96 AERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDW 144 (255)
T ss_dssp HTTCCHHHHHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCcccCCchhhHHHHHHHHhCC
Confidence 12334444444443 239999999986 1 3555555566
No 46
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=62.07 E-value=13 Score=37.76 Aligned_cols=94 Identities=12% Similarity=0.043 Sum_probs=54.6
Q ss_pred eccCCcChHHHHHHHHHHhcCCCe--EEEEEEeeecccccCCccccCCcCccccHHHHHHHHHhhcCCCCceEEEEEEe-
Q 003770 630 LFFGGRDDREALACGARMAEHPGI--SFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLV- 706 (796)
Q Consensus 630 ~f~GG~ddreAL~~a~rma~~~~v--~ltvv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~~~e~~v- 706 (796)
...=.|.|.+|++.|.|+++..+. +++++.+-+.. .++.+++.... +-+++...+--.
T Consensus 32 ~~~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G~~~-----------------~~~~lr~ala~--GaD~vi~v~d~~~ 92 (264)
T 1o97_C 32 MYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDR-----------------VDESLRKCLAK--GADRAVRVWDDAA 92 (264)
T ss_dssp EEEECHHHHHHHHHHHHHHHHCSSCCEEEEEEESCGG-----------------GHHHHHHHHHT--TCSEEEEECCGGG
T ss_pred CCccCHHHHHHHHHHHHHHHhcCCCceEEEEEeCchh-----------------HHHHHHHHHhc--CCCEEEEEcCccc
Confidence 333358899999999999875454 88888775321 13445454332 334444332111
Q ss_pred --cChHHHHHHHHhcc---CCCEEEEccCC---C----chhhcccccC
Q 003770 707 --RNTAETIAVIREVS---RCNLLLVGRMP---D----GELALALSTR 742 (796)
Q Consensus 707 --~~~~~~~~~l~~~~---~~DL~iVGr~~---~----~~~~~gl~~w 742 (796)
.+...+..++.++- +||+++.|++. + .|....+-+|
T Consensus 93 ~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~ 140 (264)
T 1o97_C 93 EGSDAIVVGRILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNW 140 (264)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCC
Confidence 13344444454432 39999999986 1 3445555555
No 47
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=61.49 E-value=17 Score=30.87 Aligned_cols=56 Identities=9% Similarity=0.014 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEecC
Q 003770 551 DMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDR 610 (796)
Q Consensus 551 ~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgIlvdr 610 (796)
...+.|.+++++.+++.||+|..++. ||.........+.+.+++-++ +.+| .++|.
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~m--dGt~~~~~~~~~~f~~~L~~~-~lpV-~~~DE 93 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRT--DLKESAQAGKVLPLVEALRAR-GVEV-ELWDE 93 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCC--CSSSCCCSSTTHHHHHHHHHT-TCEE-EEECC
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCC--CCCcCHHHHHHHHHHHHHhcC-CCCE-EEECC
Confidence 45678999999999999999998763 444333334567788887777 8898 55776
No 48
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=55.66 E-value=3.2 Score=27.73 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhccHHHHHHHHHhcCc
Q 003770 159 FLVFMGVALSITAFPVLARILAELKL 184 (796)
Q Consensus 159 ~~l~lg~~ls~Ts~~vv~~iL~el~l 184 (796)
.++.+|+++|.|++..+..++++++.
T Consensus 5 ~~llfGAiis~TDpVavlaif~~~~v 30 (33)
T 2l0e_A 5 DNLLFGSIISAVDPVAVLAVFEEIHK 30 (33)
T ss_dssp CCCTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCCChHHHHHHHHHcCC
Confidence 46789999999999999999999883
No 49
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=43.10 E-value=30 Score=37.75 Aligned_cols=58 Identities=21% Similarity=0.153 Sum_probs=44.1
Q ss_pred eEEEEeccCCcChHHHHHHHHHHhcC-CCeEEEEEEeeecccccCCccccCCcCccccHHHHHHHHHhhc
Q 003770 625 YTITVLFFGGRDDREALACGARMAEH-PGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKT 693 (796)
Q Consensus 625 ~~i~~~f~GG~ddreAL~~a~rma~~-~~v~ltvv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 693 (796)
.+|+|.|.||+|.--.|.+..++.++ .+.++.++++...-. .+.+.|.++..++..++
T Consensus 14 ~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr-----------~~s~~~~~~v~~~~~~l 72 (433)
T 1ni5_A 14 RQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLS-----------ANADAWVTHCENVCQQW 72 (433)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCC-----------SSHHHHHHHHHHHHHHT
T ss_pred CEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCC-----------cccHHHHHHHHHHHHHc
Confidence 58999999999999999999998877 889999999854321 11233456777777765
No 50
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=42.57 E-value=81 Score=32.52 Aligned_cols=90 Identities=14% Similarity=0.090 Sum_probs=54.2
Q ss_pred eEEEEeccCCcChHHHHHHHHHHh-c-----------------CCCeEEEEEEeeecccccCCccccCCcCccccHHHHH
Q 003770 625 YTITVLFFGGRDDREALACGARMA-E-----------------HPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVL 686 (796)
Q Consensus 625 ~~i~~~f~GG~ddreAL~~a~rma-~-----------------~~~v~ltvv~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 686 (796)
.++++.|.||+|+--.|.++.+.. + .++.++.++++.+... .....+++
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~-------------fpet~~fv 120 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEET-------------FPTLENFV 120 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTC-------------CHHHHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCC-------------CHHHHHHH
Confidence 489999999999999999988763 1 1345677777753322 23356788
Q ss_pred HHHHhhcCCCCceEEEEEEec-----ChHHHHHHHHhccC-CCEEEEccCC
Q 003770 687 SEFKLKTSRNGSVRYEERLVR-----NTAETIAVIREVSR-CNLLLVGRMP 731 (796)
Q Consensus 687 ~~~~~~~~~~~~v~~~e~~v~-----~~~~~~~~l~~~~~-~DL~iVGr~~ 731 (796)
+++..++. +........ .-.+......+... .+.+++|.++
T Consensus 121 ~~~~~~yg----l~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rr 167 (306)
T 2wsi_A 121 LETSERYC----LSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRH 167 (306)
T ss_dssp HHHHHHTT----EEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCC
T ss_pred HHHHHHcC----CCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEec
Confidence 88887752 222111110 11122222223333 7899999998
No 51
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=41.28 E-value=0.49 Score=31.75 Aligned_cols=27 Identities=11% Similarity=0.225 Sum_probs=23.7
Q ss_pred HHHHHHHHHhchhHHHHHHHHHhhcCC
Q 003770 272 LAAGFITDAIGIHAMFGAFVVGVLVPK 298 (796)
Q Consensus 272 l~~~~~ae~~g~~~~lgafvaGl~l~~ 298 (796)
+++++++|.+++|++++.+.+|+.+.+
T Consensus 4 y~~Yl~AE~~~lSGIlavv~~Gi~~~~ 30 (33)
T 2k3c_A 4 YMAYLSAELFHLSGIMALIASGVVMRP 30 (33)
T ss_dssp STTTGGGSSSTTTTTTTTTTTTSCCCC
T ss_pred HHHHHHHHHhCcChHHHHHHHHHHHhh
Confidence 456778999999999999999999875
No 52
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=38.57 E-value=30 Score=35.93 Aligned_cols=58 Identities=19% Similarity=0.202 Sum_probs=42.7
Q ss_pred eEEEEeccCCcChHHHHHHHHHHhcCCCeE-EEEEEeeecccccCCccccCCcCccccHHHHHHHHHhhc
Q 003770 625 YTITVLFFGGRDDREALACGARMAEHPGIS-FIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKT 693 (796)
Q Consensus 625 ~~i~~~f~GG~ddreAL~~a~rma~~~~v~-ltvv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 693 (796)
.+|++.+.||+|.--+|.++.+..+..+.+ +.++++...-. .+.+.|.++..++..++
T Consensus 25 ~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r-----------~~s~~~~~~v~~~a~~l 83 (317)
T 1wy5_A 25 RRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLR-----------ESAERDEEFCKEFAKER 83 (317)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSS-----------THHHHHHHHHHHHHHHH
T ss_pred CEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCC-----------cccHHHHHHHHHHHHHc
Confidence 589999999999999999999887777777 88888853221 11233456777777665
No 53
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=36.18 E-value=30 Score=38.21 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=45.2
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEeeecccccCCccccCCcCccccHHHHHHHHHhhc
Q 003770 624 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKT 693 (796)
Q Consensus 624 ~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 693 (796)
..+|++.+.||+|.--+|.+..++.++.+.++.++++...-.. .+.+.|.+++.++..++
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg----------~~s~~~~~~v~~~~~~l 77 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRG----------RESEEEMEFVKRFCVER 77 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCT----------HHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCc----------cccHHHHHHHHHHHHHc
Confidence 3589999999999999999999998888889999998643210 11233567777777765
No 54
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=36.17 E-value=49 Score=29.85 Aligned_cols=57 Identities=18% Similarity=0.097 Sum_probs=40.7
Q ss_pred ChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEecC
Q 003770 551 DMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDR 610 (796)
Q Consensus 551 ~m~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~vl~~ApcsVgIlvdr 610 (796)
.-.+.|.++.++.+++.||+|..++. ||.........+.+.+++-++-+.+|- ++|.
T Consensus 40 ~~~~~l~~li~e~~v~~iVvGlP~~m--dGt~~~~~~~~~~f~~~L~~~~~lpV~-~~DE 96 (138)
T 1nu0_A 40 PDWNIIERLLKEWQPDEIIVGLPLNM--DGTEQPLTARARKFANRIHGRFGVEVK-LHDE 96 (138)
T ss_dssp ECHHHHHHHHHHHCCSEEEEEEEECT--TSCBCHHHHHHHHHHHHHHHHHCCCEE-EEEE
T ss_pred hHHHHHHHHHHHcCCCEEEEecccCC--CcCcCHHHHHHHHHHHHHHHHhCCCEE-EEcC
Confidence 44689999999999999999987653 454332233456777777666678884 5765
No 55
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=35.60 E-value=1.2e+02 Score=31.38 Aligned_cols=90 Identities=18% Similarity=0.114 Sum_probs=51.5
Q ss_pred eEEEEeccCCcChHHHHHHHHHHh-c-----------------CCCeEEEEEEeeecccccCCccccCCcCccccHHHHH
Q 003770 625 YTITVLFFGGRDDREALACGARMA-E-----------------HPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVL 686 (796)
Q Consensus 625 ~~i~~~f~GG~ddreAL~~a~rma-~-----------------~~~v~ltvv~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 686 (796)
.++++.|.||+|+--.|.++.+.- + .|..++.|+.+-+..... .-.+++
T Consensus 59 ~~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~Fp-------------ET~ef~ 125 (308)
T 3fwk_A 59 GEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFK-------------TLENFI 125 (308)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTCCH-------------HHHHHH
T ss_pred CCEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCCCH-------------HHHHHH
Confidence 379999999999999999988752 1 123467777775433222 125788
Q ss_pred HHHHhhcCCCCceEEEEEEecC---hHHHHHHHHhccC-CCEEEEccCC
Q 003770 687 SEFKLKTSRNGSVRYEERLVRN---TAETIAVIREVSR-CNLLLVGRMP 731 (796)
Q Consensus 687 ~~~~~~~~~~~~v~~~e~~v~~---~~~~~~~l~~~~~-~DL~iVGr~~ 731 (796)
+++.+++. +......... -.+....+++..- +|.++.|.|+
T Consensus 126 d~~~~~yg----L~L~v~~p~~~~~~~~~cc~~~K~~P~~~AwitG~RR 170 (308)
T 3fwk_A 126 EETSLRYS----LSLYESDRDKCETMAEAFETFLQVFPETKAIVIGIRH 170 (308)
T ss_dssp HHHHHHTT----EEEEECCTTSCCCHHHHHHHHHHHCTTCCEEECCCCT
T ss_pred HHHHHHhC----CcEEEeCCCCCHHHHHHHHHHHHhCCCCCEEEEEeec
Confidence 88887762 1111100110 1122223444443 8999999998
No 56
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=31.82 E-value=43 Score=33.67 Aligned_cols=56 Identities=7% Similarity=-0.142 Sum_probs=40.8
Q ss_pred eEEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEeeecccccCCccccCCcCccccHHHHHHHHHhhcC
Q 003770 625 YTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTS 694 (796)
Q Consensus 625 ~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 694 (796)
.++++.|.||+|+--.|.++.+.... +.++.++++.+.-. -..+.++++++..++.
T Consensus 42 ~~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg~~-------------~~et~~~v~~~~~~~g 97 (261)
T 2oq2_A 42 PHLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDTLHH-------------FPQTLTLKNEIEKKYY 97 (261)
T ss_dssp SSEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECCSCB-------------CHHHHHHHHHHHHHHT
T ss_pred CCEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecCCCC-------------CHHHHHHHHHHHHHhC
Confidence 37999999999999999999998765 55677777643221 1224577888877763
No 57
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=26.89 E-value=40 Score=23.53 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=19.4
Q ss_pred EEEeEEecCCCChHHHHHHHHHhcCcc
Q 003770 540 VRPMTAISSMSDMHEDICTTAESKRAA 566 (796)
Q Consensus 540 v~~~~~vs~~~~m~~dI~~~A~e~~a~ 566 (796)
|.-+..+.| +|.++|..+|.|++-|
T Consensus 12 vslhllvdp--dmkdeiikyaqekdfd 36 (54)
T 3gxq_A 12 VSLHLLVDP--DMKDEIIKYAQEKDFD 36 (54)
T ss_dssp EEEEEEECH--HHHHHHHHHHHHHSTT
T ss_pred eEEEEeeCC--chhHHHHHHHHHccch
Confidence 334456775 9999999999999765
No 58
>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic}
Probab=25.56 E-value=2.3 Score=27.22 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=20.2
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHH
Q 003770 185 LTADVGRMAMSAAAVNDVAAWILLA 209 (796)
Q Consensus 185 l~s~~g~l~ls~a~i~D~~~~~ll~ 209 (796)
.+.++-.++.++|++||..+++++.
T Consensus 2 V~~~L~~lvfGESllNDavaiVlf~ 26 (28)
T 2htg_A 2 INELLHILVFGESLLNDAVTVVLYK 26 (28)
T ss_dssp CSSTTHHHHTTTTTTTTTTTTTTTT
T ss_pred CCceEEEEEEeeeeecccEEEEEEe
Confidence 3567788999999999998877653
No 59
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=25.11 E-value=69 Score=30.89 Aligned_cols=52 Identities=13% Similarity=-0.072 Sum_probs=36.9
Q ss_pred eEEEEeccCCcChHHHHHHHHHHhcCCCeEEEEEEeeecccccCCccccCCcCccccHHHHHHHHHhhc
Q 003770 625 YTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKT 693 (796)
Q Consensus 625 ~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltvv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 693 (796)
.+|+|.|.||+|+--.|.++.+.. + ++.++++...-. ...+.++++++..++
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~--~--~v~~v~vd~g~~-------------~~e~~~~v~~~~~~~ 96 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR--P--DIPVILTDTGYL-------------FPETYRFIDELTDKL 96 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS--T--TCEEEEEECSCB-------------CHHHHHHHHHHHHHT
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC--C--CCeEEEeeCCCC-------------CHHHHHHHHHHHHHh
Confidence 389999999999999999998874 2 456777653221 122356777777765
No 60
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.70 E-value=1.4e+02 Score=30.14 Aligned_cols=37 Identities=14% Similarity=0.192 Sum_probs=26.8
Q ss_pred ceEEEEeccCCc---ChHHHHHHHHHHhcCCCeEEEEEEeee
Q 003770 624 SYTITVLFFGGR---DDREALACGARMAEHPGISFIVIRFLL 662 (796)
Q Consensus 624 ~~~i~~~f~GG~---ddreAL~~a~rma~~~~v~ltvv~~~~ 662 (796)
.+||. +|.||+ |+.+...+|+++.++ +|.++++.|-.
T Consensus 107 ~~rII-lf~ds~~~~~~~~l~~lak~lkk~-gI~v~vIgFG~ 146 (268)
T 4b4t_W 107 HQRIV-AFVCSPISDSRDELIRLAKTLKKN-NVAVDIINFGE 146 (268)
T ss_dssp EEEEE-EEECSCCSSCHHHHHHHHHHHHHH-TEEEEEEEESS
T ss_pred ceEEE-EEECCCCCCCHHHHHHHHHHHHHc-CCEEEEEEeCC
Confidence 34554 455554 556778888888877 99999999964
No 61
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=23.52 E-value=1.2e+02 Score=27.84 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=30.4
Q ss_pred EEeEEecCCCChHHHHHHHHHhcCccEEEecCcccc
Q 003770 541 RPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQ 576 (796)
Q Consensus 541 ~~~~~vs~~~~m~~dI~~~A~e~~a~lIilp~h~~~ 576 (796)
.-...+-|...|+..|.++|++.+||+||-|.....
T Consensus 91 DLIYsirPP~El~~~i~~lA~~v~adliI~pL~~E~ 126 (153)
T 2k4m_A 91 ALIYSIRPPAEIHSSLMRVADAVGARLIIKPLTGED 126 (153)
T ss_dssp EEEEEESCCTTTHHHHHHHHHHHTCEEEEECBTTBC
T ss_pred CEEEEcCCCHHHHHHHHHHHHHcCCCEEEEcCCCCc
Confidence 344466688999999999999999999999996654
Done!