Query 003773
Match_columns 796
No_of_seqs 426 out of 3491
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 11:46:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003773.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003773hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.8E-74 3.8E-79 651.6 38.4 617 18-672 161-798 (889)
2 PLN03210 Resistant to P. syrin 100.0 3.3E-64 7.2E-69 602.4 42.8 692 2-779 169-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1E-41 2.2E-46 351.2 13.5 278 20-302 1-286 (287)
4 PLN00113 leucine-rich repeat r 99.9 2.9E-25 6.4E-30 267.9 15.8 369 373-774 69-463 (968)
5 PLN00113 leucine-rich repeat r 99.9 8.1E-25 1.8E-29 264.1 15.0 343 422-780 184-564 (968)
6 KOG0444 Cytoskeletal regulator 99.9 6.4E-25 1.4E-29 224.4 -3.8 301 422-780 74-379 (1255)
7 KOG0444 Cytoskeletal regulator 99.9 8.1E-24 1.7E-28 216.4 -3.9 338 375-777 9-353 (1255)
8 KOG4194 Membrane glycoprotein 99.8 2.3E-22 4.9E-27 204.7 2.4 211 443-679 134-352 (873)
9 KOG0472 Leucine-rich repeat pr 99.8 4.7E-22 1E-26 193.6 -3.9 357 375-777 70-542 (565)
10 PLN03210 Resistant to P. syrin 99.8 6.2E-19 1.3E-23 212.7 19.1 280 425-756 610-910 (1153)
11 KOG4194 Membrane glycoprotein 99.8 3.3E-20 7.1E-25 189.1 5.8 340 373-773 102-449 (873)
12 KOG0618 Serine/threonine phosp 99.7 2.3E-18 5.1E-23 185.4 -5.8 59 621-679 239-321 (1081)
13 KOG0472 Leucine-rich repeat pr 99.6 3.8E-18 8.1E-23 166.7 -5.7 256 443-776 54-310 (565)
14 KOG0618 Serine/threonine phosp 99.6 1.6E-17 3.4E-22 179.1 -5.7 83 422-513 64-146 (1081)
15 PRK15387 E3 ubiquitin-protein 99.5 3.7E-14 8E-19 158.5 12.7 257 427-776 202-458 (788)
16 PRK04841 transcriptional regul 99.4 2.2E-11 4.7E-16 146.9 25.4 301 7-351 6-332 (903)
17 PRK15387 E3 ubiquitin-protein 99.4 6.7E-13 1.5E-17 148.6 9.4 122 585-757 342-463 (788)
18 PRK15370 E3 ubiquitin-protein 99.4 3.5E-13 7.5E-18 152.0 7.0 90 427-534 179-268 (754)
19 PRK00411 cdc6 cell division co 99.4 2.2E-10 4.8E-15 123.6 26.8 313 12-340 27-374 (394)
20 KOG4658 Apoptotic ATPase [Sign 99.3 7.3E-13 1.6E-17 151.7 4.6 307 424-779 543-863 (889)
21 KOG4237 Extracellular matrix p 99.3 1.1E-12 2.4E-17 128.8 4.0 238 411-657 76-357 (498)
22 PRK15370 E3 ubiquitin-protein 99.3 3.6E-12 7.8E-17 143.8 8.6 179 426-679 220-399 (754)
23 KOG0617 Ras suppressor protein 99.3 5.4E-14 1.2E-18 121.6 -4.6 180 455-684 31-215 (264)
24 KOG4237 Extracellular matrix p 99.3 3E-13 6.6E-18 132.7 -2.9 92 443-534 76-170 (498)
25 PF01637 Arch_ATPase: Archaeal 99.2 2.2E-11 4.8E-16 121.5 8.8 196 17-218 1-233 (234)
26 KOG0617 Ras suppressor protein 99.2 2.3E-13 4.9E-18 117.8 -5.0 104 422-534 52-156 (264)
27 TIGR03015 pepcterm_ATPase puta 99.2 9.6E-10 2.1E-14 112.0 20.1 182 37-223 43-242 (269)
28 COG2909 MalT ATP-dependent tra 99.2 2E-09 4.3E-14 117.2 21.1 303 7-350 11-337 (894)
29 TIGR02928 orc1/cdc6 family rep 99.1 2.1E-09 4.6E-14 114.8 19.3 301 13-327 13-351 (365)
30 cd00116 LRR_RI Leucine-rich re 99.1 3.7E-12 8E-17 133.8 -1.9 93 419-514 16-118 (319)
31 PF05729 NACHT: NACHT domain 99.1 6.4E-10 1.4E-14 104.2 12.4 144 38-186 1-163 (166)
32 cd00116 LRR_RI Leucine-rich re 99.0 3.1E-11 6.6E-16 126.8 -0.5 65 450-514 16-91 (319)
33 PRK00080 ruvB Holliday junctio 99.0 2.2E-09 4.7E-14 111.9 11.6 276 10-325 20-309 (328)
34 TIGR00635 ruvB Holliday juncti 99.0 1.6E-08 3.4E-13 104.9 16.9 264 15-325 4-288 (305)
35 PTZ00112 origin recognition co 99.0 1.5E-08 3.2E-13 111.3 16.5 211 13-223 753-986 (1164)
36 COG2256 MGS1 ATPase related to 98.9 1.6E-08 3.6E-13 101.0 14.0 259 11-300 20-302 (436)
37 KOG0532 Leucine-rich repeat (L 98.8 3.5E-10 7.5E-15 116.7 -2.0 102 422-534 94-195 (722)
38 PRK07003 DNA polymerase III su 98.8 6.8E-08 1.5E-12 105.9 15.4 195 5-221 6-223 (830)
39 PRK06893 DNA replication initi 98.8 5.3E-08 1.1E-12 95.5 12.6 180 12-223 13-207 (229)
40 PTZ00202 tuzin; Provisional 98.8 4.7E-07 1E-11 92.4 18.6 166 9-185 256-433 (550)
41 PRK14960 DNA polymerase III su 98.8 1.4E-07 3.1E-12 102.3 15.8 191 4-216 4-216 (702)
42 COG3899 Predicted ATPase [Gene 98.8 1.4E-07 3E-12 109.4 16.8 312 16-350 1-385 (849)
43 PRK14961 DNA polymerase III su 98.8 2.9E-07 6.2E-12 97.1 17.5 203 6-215 7-216 (363)
44 PRK14963 DNA polymerase III su 98.7 3.2E-08 6.9E-13 107.4 10.1 211 5-221 5-220 (504)
45 PRK13342 recombination factor 98.7 6.9E-08 1.5E-12 103.8 12.7 183 10-221 7-198 (413)
46 PF13401 AAA_22: AAA domain; P 98.7 2E-08 4.3E-13 89.7 6.9 118 36-155 3-125 (131)
47 PRK14949 DNA polymerase III su 98.7 2.4E-07 5.3E-12 103.8 16.3 189 7-217 8-218 (944)
48 TIGR03420 DnaA_homol_Hda DnaA 98.7 1.3E-07 2.9E-12 93.4 12.4 178 14-223 14-205 (226)
49 PRK12323 DNA polymerase III su 98.7 2.3E-07 4.9E-12 100.5 14.5 191 5-217 6-223 (700)
50 PRK14962 DNA polymerase III su 98.7 3.9E-07 8.4E-12 98.2 16.4 201 1-223 1-223 (472)
51 PRK12402 replication factor C 98.7 4.1E-07 9E-12 96.1 15.9 203 10-218 10-225 (337)
52 COG1474 CDC6 Cdc6-related prot 98.7 1.3E-06 2.9E-11 90.8 18.8 208 13-220 15-239 (366)
53 PRK14956 DNA polymerase III su 98.7 2.2E-07 4.7E-12 98.2 12.7 200 8-214 11-217 (484)
54 PRK06645 DNA polymerase III su 98.7 7.4E-07 1.6E-11 96.4 16.8 203 8-214 14-224 (507)
55 PRK05564 DNA polymerase III su 98.6 8.2E-07 1.8E-11 92.0 16.3 178 15-217 4-188 (313)
56 PRK08691 DNA polymerase III su 98.6 4.9E-07 1.1E-11 99.3 14.6 191 4-216 5-217 (709)
57 PRK14957 DNA polymerase III su 98.6 9.7E-07 2.1E-11 96.0 16.7 195 7-223 8-225 (546)
58 PRK04195 replication factor C 98.6 3.4E-06 7.3E-11 92.7 21.3 184 10-219 9-202 (482)
59 PRK05896 DNA polymerase III su 98.6 8.6E-07 1.9E-11 96.4 15.8 204 7-221 8-223 (605)
60 PF05496 RuvB_N: Holliday junc 98.6 8.3E-07 1.8E-11 83.1 13.3 187 5-223 14-225 (233)
61 PLN03025 replication factor C 98.6 6.4E-07 1.4E-11 93.0 14.1 186 9-214 7-195 (319)
62 PF13191 AAA_16: AAA ATPase do 98.6 6.9E-08 1.5E-12 92.2 6.3 49 16-64 1-51 (185)
63 PRK14964 DNA polymerase III su 98.6 1E-06 2.2E-11 94.4 15.7 187 8-215 6-213 (491)
64 PF13173 AAA_14: AAA domain 98.6 2.5E-07 5.3E-12 81.7 9.3 119 38-178 3-127 (128)
65 COG4886 Leucine-rich repeat (L 98.6 3.1E-08 6.6E-13 107.1 3.7 182 423-664 113-295 (394)
66 PRK00440 rfc replication facto 98.6 1.9E-06 4.2E-11 90.2 16.9 186 10-216 12-200 (319)
67 KOG0989 Replication factor C, 98.6 2.7E-07 5.8E-12 88.9 9.3 187 10-212 31-223 (346)
68 TIGR02397 dnaX_nterm DNA polym 98.6 2.4E-06 5.2E-11 90.9 17.8 189 9-219 8-218 (355)
69 PRK07994 DNA polymerase III su 98.6 1.3E-06 2.8E-11 96.6 15.6 201 6-217 7-218 (647)
70 PRK14951 DNA polymerase III su 98.6 1.6E-06 3.5E-11 95.7 16.3 209 4-216 5-222 (618)
71 PRK09112 DNA polymerase III su 98.5 1.2E-06 2.5E-11 90.9 13.4 202 9-220 17-241 (351)
72 cd00009 AAA The AAA+ (ATPases 98.5 5.8E-07 1.2E-11 82.3 10.0 125 18-157 1-131 (151)
73 PRK09111 DNA polymerase III su 98.5 2.9E-06 6.2E-11 94.0 16.7 207 4-218 13-232 (598)
74 PRK14969 DNA polymerase III su 98.5 2.5E-06 5.4E-11 93.8 15.6 196 6-222 7-224 (527)
75 PRK14958 DNA polymerase III su 98.5 2.4E-06 5.2E-11 93.2 15.3 191 5-216 6-217 (509)
76 KOG2227 Pre-initiation complex 98.5 3.9E-06 8.5E-11 85.7 15.3 228 6-235 141-386 (529)
77 PRK14955 DNA polymerase III su 98.5 2.6E-06 5.7E-11 91.0 15.0 211 4-219 5-229 (397)
78 PRK07471 DNA polymerase III su 98.5 4.5E-06 9.8E-11 87.1 16.0 197 9-219 13-238 (365)
79 PRK13341 recombination factor 98.5 1.6E-06 3.4E-11 98.1 13.5 176 11-214 24-212 (725)
80 COG3903 Predicted ATPase [Gene 98.4 2.4E-07 5.3E-12 93.6 5.9 270 35-325 12-291 (414)
81 PRK08451 DNA polymerase III su 98.4 8E-06 1.7E-10 88.5 17.7 188 6-219 5-218 (535)
82 PRK14959 DNA polymerase III su 98.4 4.6E-06 9.9E-11 91.4 15.9 194 8-223 9-225 (624)
83 KOG3207 Beta-tubulin folding c 98.4 1.2E-07 2.6E-12 95.4 3.3 61 454-514 118-182 (505)
84 PRK08727 hypothetical protein; 98.4 3.1E-06 6.8E-11 83.2 13.2 170 15-216 19-201 (233)
85 PRK08903 DnaA regulatory inact 98.4 3.1E-06 6.7E-11 83.5 13.2 175 14-223 17-203 (227)
86 PRK14954 DNA polymerase III su 98.4 6.4E-06 1.4E-10 91.4 16.5 211 5-219 6-229 (620)
87 PRK14952 DNA polymerase III su 98.4 8.1E-06 1.8E-10 89.9 17.2 196 5-223 4-224 (584)
88 cd01128 rho_factor Transcripti 98.4 6.7E-07 1.5E-11 87.7 7.9 90 36-126 15-113 (249)
89 PRK07133 DNA polymerase III su 98.4 7.4E-06 1.6E-10 91.2 16.9 205 7-220 10-221 (725)
90 KOG4341 F-box protein containi 98.4 2.9E-08 6.3E-13 99.1 -1.7 306 426-796 138-456 (483)
91 PRK07940 DNA polymerase III su 98.4 5.5E-06 1.2E-10 87.2 15.1 177 15-219 5-213 (394)
92 PF14580 LRR_9: Leucine-rich r 98.4 1.9E-07 4E-12 85.7 3.2 81 423-514 16-98 (175)
93 PRK07764 DNA polymerase III su 98.4 7.7E-06 1.7E-10 93.8 16.8 195 5-222 5-225 (824)
94 TIGR00678 holB DNA polymerase 98.4 7.7E-06 1.7E-10 77.9 14.4 90 115-214 95-186 (188)
95 PRK14970 DNA polymerase III su 98.4 1.1E-05 2.5E-10 85.8 17.2 187 7-214 9-204 (367)
96 KOG2028 ATPase related to the 98.4 4.9E-06 1.1E-10 81.8 12.4 153 11-185 134-293 (554)
97 PRK14971 DNA polymerase III su 98.4 1.3E-05 2.8E-10 89.7 17.4 187 6-214 8-217 (614)
98 PRK05563 DNA polymerase III su 98.4 1.3E-05 2.9E-10 88.8 17.4 187 5-215 7-216 (559)
99 TIGR02903 spore_lon_C ATP-depe 98.4 9.8E-06 2.1E-10 91.0 16.5 207 11-222 150-398 (615)
100 KOG1909 Ran GTPase-activating 98.3 2.7E-08 5.7E-13 97.2 -3.5 88 419-514 23-130 (382)
101 PRK06305 DNA polymerase III su 98.3 1.4E-05 3E-10 86.3 16.7 193 5-220 7-224 (451)
102 PF14580 LRR_9: Leucine-rich r 98.3 3.6E-07 7.8E-12 83.9 3.9 101 424-535 40-147 (175)
103 PRK08084 DNA replication initi 98.3 5.9E-06 1.3E-10 81.4 12.7 155 36-221 44-211 (235)
104 PRK06647 DNA polymerase III su 98.3 1.4E-05 3E-10 88.2 16.8 205 4-215 5-216 (563)
105 PRK14950 DNA polymerase III su 98.3 1.7E-05 3.6E-10 89.1 17.6 200 9-218 10-220 (585)
106 COG4886 Leucine-rich repeat (L 98.3 3.2E-07 6.9E-12 99.2 3.8 190 443-684 102-293 (394)
107 KOG1259 Nischarin, modulator o 98.3 1.7E-07 3.6E-12 89.4 1.4 107 581-720 303-410 (490)
108 PRK14953 DNA polymerase III su 98.3 2.8E-05 6.1E-10 84.5 18.2 187 9-217 10-218 (486)
109 KOG4341 F-box protein containi 98.3 5.9E-08 1.3E-12 97.0 -2.6 306 396-770 138-459 (483)
110 PHA02544 44 clamp loader, smal 98.3 7.9E-06 1.7E-10 85.2 12.4 153 10-184 16-171 (316)
111 PRK09087 hypothetical protein; 98.3 1.1E-05 2.4E-10 78.6 12.4 143 37-220 44-196 (226)
112 PLN03150 hypothetical protein; 98.3 1.4E-06 2.9E-11 98.8 7.1 93 427-526 419-512 (623)
113 PF00308 Bac_DnaA: Bacterial d 98.2 7.4E-06 1.6E-10 79.5 10.8 165 36-220 33-209 (219)
114 KOG3207 Beta-tubulin folding c 98.2 5.3E-07 1.1E-11 90.9 2.9 150 372-534 120-277 (505)
115 PRK14948 DNA polymerase III su 98.2 3.7E-05 8.1E-10 86.0 17.5 199 10-217 11-220 (620)
116 PF13855 LRR_8: Leucine rich r 98.2 1.2E-06 2.6E-11 65.7 3.7 56 458-514 2-59 (61)
117 PF05673 DUF815: Protein of un 98.2 2.3E-05 4.9E-10 74.7 12.9 124 11-159 23-154 (249)
118 PRK14087 dnaA chromosomal repl 98.2 2.1E-05 4.5E-10 84.9 14.3 171 37-223 141-323 (450)
119 PF14516 AAA_35: AAA-like doma 98.2 7.6E-05 1.7E-09 77.5 18.0 205 10-226 6-246 (331)
120 PRK14965 DNA polymerase III su 98.2 5.2E-05 1.1E-09 84.6 17.5 193 7-222 8-224 (576)
121 PF13855 LRR_8: Leucine rich r 98.2 1.8E-06 3.9E-11 64.7 4.0 58 426-491 1-60 (61)
122 KOG2543 Origin recognition com 98.2 6.5E-05 1.4E-09 75.1 15.7 166 12-184 3-191 (438)
123 PRK09376 rho transcription ter 98.2 5.2E-06 1.1E-10 84.8 8.1 100 26-126 158-266 (416)
124 KOG1259 Nischarin, modulator o 98.2 7.7E-07 1.7E-11 85.0 2.0 130 582-752 281-412 (490)
125 PRK05642 DNA replication initi 98.2 2.3E-05 5E-10 77.0 12.4 156 37-223 45-212 (234)
126 KOG0532 Leucine-rich repeat (L 98.1 2.6E-07 5.5E-12 96.1 -1.9 124 395-534 117-240 (722)
127 TIGR01242 26Sp45 26S proteasom 98.1 2.1E-05 4.5E-10 83.4 12.3 174 14-213 121-328 (364)
128 TIGR03345 VI_ClpV1 type VI sec 98.1 3.4E-05 7.4E-10 89.8 15.0 184 13-213 185-390 (852)
129 PF05621 TniB: Bacterial TniB 98.1 8.7E-05 1.9E-09 73.3 15.1 201 13-214 32-256 (302)
130 PLN03150 hypothetical protein; 98.1 6.1E-06 1.3E-10 93.5 7.9 108 401-518 420-529 (623)
131 TIGR00767 rho transcription te 98.1 1E-05 2.2E-10 83.2 7.8 89 37-126 168-265 (415)
132 PRK14088 dnaA chromosomal repl 98.0 0.00011 2.3E-09 79.5 15.5 161 37-217 130-303 (440)
133 KOG2120 SCF ubiquitin ligase, 98.0 3.5E-07 7.6E-12 87.3 -4.1 81 427-515 186-271 (419)
134 COG3267 ExeA Type II secretory 98.0 0.00047 1E-08 65.5 16.5 182 35-222 49-248 (269)
135 TIGR00362 DnaA chromosomal rep 98.0 0.00015 3.2E-09 78.3 15.0 162 37-218 136-309 (405)
136 PRK07399 DNA polymerase III su 98.0 0.00021 4.6E-09 73.1 15.3 195 15-219 4-221 (314)
137 KOG2120 SCF ubiquitin ligase, 98.0 5.7E-07 1.2E-11 85.9 -3.1 159 581-774 206-374 (419)
138 PF12799 LRR_4: Leucine Rich r 97.9 9.6E-06 2.1E-10 55.3 3.6 39 457-496 1-39 (44)
139 KOG0991 Replication factor C, 97.9 4.9E-05 1.1E-09 70.3 9.0 115 9-139 21-136 (333)
140 TIGR02639 ClpA ATP-dependent C 97.9 9.6E-05 2.1E-09 85.6 13.8 156 14-186 181-358 (731)
141 TIGR02881 spore_V_K stage V sp 97.9 0.00012 2.7E-09 73.5 12.7 136 36-187 41-192 (261)
142 PRK03992 proteasome-activating 97.9 0.00012 2.7E-09 77.8 12.2 173 15-213 131-337 (389)
143 PRK11331 5-methylcytosine-spec 97.8 3.8E-05 8.2E-10 80.5 7.6 120 14-140 174-297 (459)
144 CHL00095 clpC Clp protease ATP 97.8 0.00011 2.4E-09 86.2 12.4 155 15-185 179-353 (821)
145 PRK00149 dnaA chromosomal repl 97.8 0.00022 4.7E-09 78.0 13.8 161 37-217 148-320 (450)
146 CHL00181 cbbX CbbX; Provisiona 97.8 0.00044 9.6E-09 70.0 15.0 134 39-188 61-211 (287)
147 PRK06620 hypothetical protein; 97.8 0.0002 4.4E-09 69.1 11.9 135 38-217 45-187 (214)
148 PRK15386 type III secretion pr 97.8 4.5E-05 9.7E-10 79.0 7.6 65 454-523 49-113 (426)
149 PF00004 AAA: ATPase family as 97.8 5.9E-05 1.3E-09 67.2 7.6 21 40-60 1-21 (132)
150 PRK05707 DNA polymerase III su 97.8 0.00051 1.1E-08 70.8 15.0 97 115-219 105-203 (328)
151 PRK14086 dnaA chromosomal repl 97.8 0.00031 6.8E-09 76.9 14.0 160 38-217 315-486 (617)
152 KOG1909 Ran GTPase-activating 97.8 6.6E-06 1.4E-10 80.9 1.1 70 418-491 50-131 (382)
153 TIGR02880 cbbX_cfxQ probable R 97.8 0.00029 6.3E-09 71.4 12.5 133 39-187 60-209 (284)
154 PRK12422 chromosomal replicati 97.8 0.00063 1.4E-08 73.3 15.7 154 37-212 141-306 (445)
155 PF12799 LRR_4: Leucine Rich r 97.8 2.7E-05 5.9E-10 53.1 3.4 41 426-474 1-41 (44)
156 COG2812 DnaX DNA polymerase II 97.7 4.8E-05 1E-09 81.4 6.7 198 7-213 8-214 (515)
157 TIGR00602 rad24 checkpoint pro 97.7 0.00018 3.9E-09 80.0 11.3 52 9-60 78-133 (637)
158 COG2255 RuvB Holliday junction 97.7 0.00054 1.2E-08 65.9 12.6 181 10-222 21-226 (332)
159 PRK08058 DNA polymerase III su 97.7 0.00052 1.1E-08 71.3 13.9 149 15-184 5-180 (329)
160 TIGR03346 chaperone_ClpB ATP-d 97.7 0.00036 7.8E-09 82.2 13.9 157 14-186 172-349 (852)
161 COG1373 Predicted ATPase (AAA+ 97.7 0.00067 1.5E-08 72.2 14.4 134 22-182 24-163 (398)
162 smart00382 AAA ATPases associa 97.7 0.00023 5E-09 64.3 9.6 87 38-128 3-90 (148)
163 KOG1514 Origin recognition com 97.7 0.0016 3.5E-08 70.6 16.8 207 12-223 393-625 (767)
164 COG0593 DnaA ATPase involved i 97.7 0.00037 8E-09 72.5 11.7 134 36-188 112-259 (408)
165 PRK08116 hypothetical protein; 97.6 0.00019 4E-09 72.0 8.8 103 38-155 115-220 (268)
166 KOG0531 Protein phosphatase 1, 97.6 1E-05 2.2E-10 87.6 -0.3 100 422-533 91-191 (414)
167 PRK15386 type III secretion pr 97.6 0.0002 4.4E-09 74.2 9.0 32 739-773 156-187 (426)
168 PRK08769 DNA polymerase III su 97.6 0.00092 2E-08 68.2 13.5 95 115-219 112-208 (319)
169 PRK10865 protein disaggregatio 97.6 0.00063 1.4E-08 79.8 14.1 158 13-186 176-354 (857)
170 TIGR03689 pup_AAA proteasome A 97.6 0.00046 1E-08 74.7 11.8 162 15-186 182-378 (512)
171 PRK10865 protein disaggregatio 97.5 0.0011 2.5E-08 77.7 14.7 120 15-142 568-696 (857)
172 PF13177 DNA_pol3_delta2: DNA 97.5 0.00067 1.5E-08 62.4 10.2 137 19-173 1-161 (162)
173 CHL00176 ftsH cell division pr 97.5 0.0014 3.1E-08 73.6 14.6 174 14-212 182-387 (638)
174 PRK11034 clpA ATP-dependent Cl 97.5 0.00014 2.9E-09 83.2 6.4 157 15-186 186-362 (758)
175 PRK06090 DNA polymerase III su 97.5 0.0029 6.3E-08 64.5 15.0 154 34-219 22-201 (319)
176 PRK06871 DNA polymerase III su 97.5 0.0037 8.1E-08 63.9 15.7 169 34-215 21-199 (325)
177 COG0542 clpA ATP-binding subun 97.5 0.00027 5.8E-09 79.0 8.0 118 15-143 491-620 (786)
178 PTZ00361 26 proteosome regulat 97.5 0.00053 1.2E-08 73.1 9.7 153 15-187 183-368 (438)
179 KOG1859 Leucine-rich repeat pr 97.4 2E-06 4.4E-11 92.0 -8.7 60 617-678 181-242 (1096)
180 COG1223 Predicted ATPase (AAA+ 97.4 0.0035 7.6E-08 59.4 13.4 175 13-213 119-319 (368)
181 TIGR01241 FtsH_fam ATP-depende 97.4 0.0021 4.6E-08 71.2 14.0 175 14-213 54-260 (495)
182 PTZ00454 26S protease regulato 97.4 0.0019 4.2E-08 68.4 12.9 173 16-213 146-351 (398)
183 PRK10536 hypothetical protein; 97.4 0.00085 1.8E-08 65.1 8.9 135 16-157 56-214 (262)
184 KOG0531 Protein phosphatase 1, 97.4 4.5E-05 9.7E-10 82.6 0.3 70 443-514 81-150 (414)
185 TIGR03345 VI_ClpV1 type VI sec 97.4 0.00047 1E-08 80.5 8.4 119 15-143 566-695 (852)
186 PRK08181 transposase; Validate 97.3 0.00045 9.7E-09 68.7 6.7 100 38-155 107-208 (269)
187 CHL00195 ycf46 Ycf46; Provisio 97.3 0.0026 5.6E-08 69.1 13.0 177 13-213 226-429 (489)
188 PF04665 Pox_A32: Poxvirus A32 97.3 0.00049 1.1E-08 66.4 6.6 35 39-75 15-49 (241)
189 TIGR03346 chaperone_ClpB ATP-d 97.3 0.00069 1.5E-08 79.8 9.1 118 15-142 565-693 (852)
190 COG1222 RPT1 ATP-dependent 26S 97.3 0.004 8.6E-08 62.2 12.3 153 35-213 183-357 (406)
191 KOG2982 Uncharacterized conser 97.3 6.7E-05 1.5E-09 72.1 -0.0 84 707-796 197-283 (418)
192 PRK06921 hypothetical protein; 97.2 0.0015 3.2E-08 65.4 9.4 100 37-155 117-224 (266)
193 TIGR02639 ClpA ATP-dependent C 97.2 0.0028 6.1E-08 73.6 13.0 118 14-142 453-579 (731)
194 PRK04132 replication factor C 97.2 0.009 2E-07 68.7 16.6 155 42-216 569-728 (846)
195 KOG4579 Leucine-rich repeat (L 97.2 6.3E-05 1.4E-09 63.7 -0.5 71 443-514 62-133 (177)
196 PRK06964 DNA polymerase III su 97.2 0.008 1.7E-07 62.0 14.5 93 115-219 131-225 (342)
197 KOG1969 DNA replication checkp 97.2 0.0012 2.6E-08 71.7 8.6 80 32-129 321-400 (877)
198 PRK08939 primosomal protein Dn 97.2 0.0014 3E-08 66.9 8.5 102 36-155 155-260 (306)
199 PRK08118 topology modulation p 97.2 0.00021 4.6E-09 66.0 2.4 35 38-72 2-37 (167)
200 COG2607 Predicted ATPase (AAA+ 97.2 0.0017 3.8E-08 60.9 8.2 117 15-156 60-183 (287)
201 PRK07993 DNA polymerase III su 97.2 0.01 2.3E-07 61.4 14.9 162 26-216 13-201 (334)
202 PF07693 KAP_NTPase: KAP famil 97.1 0.015 3.3E-07 61.0 16.4 28 35-62 18-45 (325)
203 KOG0744 AAA+-type ATPase [Post 97.1 0.0035 7.6E-08 61.5 10.0 27 37-63 177-203 (423)
204 PF10443 RNA12: RNA12 protein; 97.1 0.022 4.8E-07 59.3 16.4 202 20-232 1-291 (431)
205 PRK06526 transposase; Provisio 97.1 0.00081 1.8E-08 66.6 5.7 101 37-156 98-201 (254)
206 PRK04296 thymidine kinase; Pro 97.1 0.0011 2.3E-08 63.0 6.2 114 38-158 3-118 (190)
207 COG0470 HolB ATPase involved i 97.1 0.002 4.3E-08 67.6 9.0 142 16-173 2-168 (325)
208 PRK09183 transposase/IS protei 97.1 0.0017 3.6E-08 64.9 7.8 100 38-155 103-205 (259)
209 PRK12608 transcription termina 97.1 0.0035 7.5E-08 64.5 10.1 99 26-125 122-229 (380)
210 PF07728 AAA_5: AAA domain (dy 97.1 0.00028 6E-09 63.5 2.0 88 40-140 2-89 (139)
211 PRK07261 topology modulation p 97.1 0.0015 3.2E-08 60.8 6.9 22 39-60 2-23 (171)
212 TIGR02237 recomb_radB DNA repa 97.1 0.0022 4.7E-08 62.3 8.4 48 36-86 11-58 (209)
213 PRK12377 putative replication 97.0 0.0011 2.3E-08 65.2 6.0 102 37-155 101-205 (248)
214 TIGR02640 gas_vesic_GvpN gas v 97.0 0.01 2.2E-07 59.7 13.1 42 38-84 22-63 (262)
215 COG1875 NYN ribonuclease and A 97.0 0.0013 2.7E-08 65.8 6.3 137 17-157 226-389 (436)
216 KOG2228 Origin recognition com 97.0 0.0088 1.9E-07 59.2 11.9 171 13-186 22-219 (408)
217 PF01695 IstB_IS21: IstB-like 97.0 0.00086 1.9E-08 62.6 4.9 101 36-155 46-149 (178)
218 COG0542 clpA ATP-binding subun 97.0 0.0011 2.5E-08 74.2 6.6 156 14-186 169-346 (786)
219 PF02562 PhoH: PhoH-like prote 97.0 0.0011 2.3E-08 62.6 5.1 118 36-157 18-157 (205)
220 CHL00095 clpC Clp protease ATP 97.0 0.0025 5.3E-08 75.0 9.3 121 14-142 508-637 (821)
221 KOG3665 ZYG-1-like serine/thre 97.0 0.00069 1.5E-08 76.8 4.5 109 394-516 146-262 (699)
222 PRK07952 DNA replication prote 97.0 0.0024 5.2E-08 62.6 7.7 103 37-155 99-204 (244)
223 PRK09361 radB DNA repair and r 97.0 0.0027 5.8E-08 62.5 8.2 46 36-84 22-67 (225)
224 PRK08699 DNA polymerase III su 97.0 0.0076 1.7E-07 62.1 11.7 71 115-185 112-184 (325)
225 KOG0741 AAA+-type ATPase [Post 96.9 0.022 4.7E-07 59.9 13.9 149 35-209 536-704 (744)
226 PRK06835 DNA replication prote 96.9 0.0021 4.5E-08 66.2 6.6 102 38-155 184-288 (329)
227 TIGR02902 spore_lonB ATP-depen 96.8 0.0037 8E-08 69.4 8.6 49 11-60 61-109 (531)
228 KOG2982 Uncharacterized conser 96.8 0.00042 9.2E-09 66.8 1.0 84 423-514 68-156 (418)
229 cd01123 Rad51_DMC1_radA Rad51_ 96.8 0.0051 1.1E-07 61.0 8.6 50 36-85 18-71 (235)
230 cd01393 recA_like RecA is a b 96.8 0.0063 1.4E-07 59.9 9.1 88 36-126 18-124 (226)
231 TIGR01243 CDC48 AAA family ATP 96.8 0.016 3.6E-07 67.6 13.9 152 36-213 486-657 (733)
232 KOG3665 ZYG-1-like serine/thre 96.7 0.00096 2.1E-08 75.7 3.3 94 414-515 136-231 (699)
233 KOG2035 Replication factor C, 96.7 0.043 9.3E-07 52.9 13.5 187 11-214 9-223 (351)
234 PRK11034 clpA ATP-dependent Cl 96.7 0.0033 7.1E-08 72.1 7.4 117 15-142 458-583 (758)
235 PLN00020 ribulose bisphosphate 96.7 0.032 6.9E-07 57.0 13.3 26 35-60 146-171 (413)
236 cd00561 CobA_CobO_BtuR ATP:cor 96.7 0.0076 1.7E-07 54.4 8.1 116 38-156 3-138 (159)
237 cd01120 RecA-like_NTPases RecA 96.7 0.0075 1.6E-07 55.8 8.5 39 39-79 1-39 (165)
238 KOG2004 Mitochondrial ATP-depe 96.7 0.015 3.3E-07 63.4 11.4 161 13-186 409-596 (906)
239 PF13207 AAA_17: AAA domain; P 96.7 0.0013 2.7E-08 57.5 2.9 22 39-60 1-22 (121)
240 COG1484 DnaC DNA replication p 96.7 0.0036 7.8E-08 62.1 6.4 82 36-134 104-185 (254)
241 TIGR01243 CDC48 AAA family ATP 96.7 0.0097 2.1E-07 69.4 11.0 176 15-215 178-383 (733)
242 cd01394 radB RadB. The archaea 96.7 0.0064 1.4E-07 59.4 8.2 43 36-80 18-60 (218)
243 cd03247 ABCC_cytochrome_bd The 96.6 0.012 2.5E-07 55.4 9.5 117 38-160 29-161 (178)
244 KOG0735 AAA+-type ATPase [Post 96.6 0.024 5.2E-07 61.8 12.6 161 37-219 431-616 (952)
245 PRK10787 DNA-binding ATP-depen 96.6 0.0093 2E-07 69.1 10.5 161 14-186 321-506 (784)
246 PRK05541 adenylylsulfate kinas 96.6 0.0039 8.4E-08 58.6 6.1 37 36-74 6-42 (176)
247 cd03214 ABC_Iron-Siderophores_ 96.6 0.013 2.9E-07 55.2 9.5 120 37-159 25-161 (180)
248 PF00158 Sigma54_activat: Sigm 96.6 0.0034 7.3E-08 57.9 5.2 130 17-155 1-143 (168)
249 KOG4579 Leucine-rich repeat (L 96.6 0.00069 1.5E-08 57.6 0.6 76 415-499 66-141 (177)
250 TIGR00763 lon ATP-dependent pr 96.6 0.012 2.6E-07 68.9 10.9 159 15-186 320-505 (775)
251 cd03223 ABCD_peroxisomal_ALDP 96.6 0.019 4.2E-07 53.1 10.3 118 37-159 27-151 (166)
252 cd01133 F1-ATPase_beta F1 ATP 96.6 0.0059 1.3E-07 60.4 7.0 116 8-125 34-172 (274)
253 COG2884 FtsE Predicted ATPase 96.6 0.012 2.7E-07 53.4 8.3 125 36-163 27-204 (223)
254 cd03228 ABCC_MRP_Like The MRP 96.5 0.015 3.3E-07 54.2 9.2 118 37-161 28-160 (171)
255 PF08423 Rad51: Rad51; InterP 96.5 0.0091 2E-07 59.5 8.1 55 37-92 38-96 (256)
256 PTZ00494 tuzin-like protein; P 96.5 0.083 1.8E-06 54.8 14.7 167 10-185 366-543 (664)
257 COG0466 Lon ATP-dependent Lon 96.5 0.022 4.8E-07 62.5 11.3 161 13-186 321-508 (782)
258 smart00763 AAA_PrkA PrkA AAA d 96.5 0.0021 4.5E-08 65.8 3.5 46 16-61 52-102 (361)
259 cd00983 recA RecA is a bacter 96.4 0.0047 1E-07 62.9 5.7 85 35-126 53-143 (325)
260 KOG1644 U2-associated snRNP A' 96.4 0.0031 6.8E-08 57.7 3.8 108 645-775 41-152 (233)
261 TIGR02012 tigrfam_recA protein 96.4 0.0047 1E-07 62.8 5.6 85 35-126 53-143 (321)
262 KOG1859 Leucine-rich repeat pr 96.4 0.00061 1.3E-08 73.7 -0.8 106 395-515 183-290 (1096)
263 PF14532 Sigma54_activ_2: Sigm 96.4 0.0012 2.7E-08 59.0 1.2 106 18-155 1-109 (138)
264 PF07724 AAA_2: AAA domain (Cd 96.4 0.0023 5E-08 59.2 3.0 90 37-141 3-104 (171)
265 cd03238 ABC_UvrA The excision 96.4 0.013 2.7E-07 54.6 7.7 113 38-160 22-153 (176)
266 PF03969 AFG1_ATPase: AFG1-lik 96.4 0.0081 1.8E-07 62.7 7.0 77 35-129 60-140 (362)
267 COG1102 Cmk Cytidylate kinase 96.3 0.0063 1.4E-07 53.6 5.0 44 39-95 2-45 (179)
268 PF03215 Rad17: Rad17 cell cyc 96.3 0.02 4.3E-07 62.8 10.1 60 11-74 15-78 (519)
269 TIGR03499 FlhF flagellar biosy 96.3 0.016 3.5E-07 58.7 8.7 88 36-125 193-281 (282)
270 PRK09354 recA recombinase A; P 96.3 0.0074 1.6E-07 61.9 6.0 85 35-126 58-148 (349)
271 cd03216 ABC_Carb_Monos_I This 96.3 0.016 3.4E-07 53.6 7.7 115 38-159 27-145 (163)
272 PRK14722 flhF flagellar biosyn 96.3 0.015 3.2E-07 60.6 8.3 88 37-126 137-225 (374)
273 TIGR02238 recomb_DMC1 meiotic 96.3 0.014 3E-07 59.8 8.0 58 36-94 95-156 (313)
274 PF00560 LRR_1: Leucine Rich R 96.3 0.0021 4.5E-08 36.3 1.1 21 458-478 1-21 (22)
275 KOG0730 AAA+-type ATPase [Post 96.2 0.03 6.6E-07 60.7 10.5 26 35-60 466-491 (693)
276 PF10236 DAP3: Mitochondrial r 96.2 0.13 2.8E-06 52.9 14.9 49 167-216 258-306 (309)
277 PF00448 SRP54: SRP54-type pro 96.2 0.018 4E-07 54.6 8.1 87 37-125 1-92 (196)
278 COG4608 AppF ABC-type oligopep 96.2 0.023 4.9E-07 55.3 8.6 124 37-163 39-177 (268)
279 COG0468 RecA RecA/RadA recombi 96.2 0.024 5.1E-07 56.4 8.9 89 35-125 58-150 (279)
280 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.2 0.029 6.3E-07 50.5 8.8 104 37-159 26-130 (144)
281 PRK06067 flagellar accessory p 96.2 0.02 4.4E-07 56.5 8.6 87 35-126 23-130 (234)
282 PRK09270 nucleoside triphospha 96.2 0.02 4.3E-07 56.3 8.4 27 34-60 30-56 (229)
283 cd03246 ABCC_Protease_Secretio 96.2 0.022 4.7E-07 53.3 8.2 119 38-160 29-160 (173)
284 KOG0743 AAA+-type ATPase [Post 96.1 0.14 3E-06 53.5 14.3 154 38-226 236-417 (457)
285 TIGR01650 PD_CobS cobaltochela 96.1 0.074 1.6E-06 54.1 12.1 63 11-81 41-103 (327)
286 PRK07132 DNA polymerase III su 96.1 0.19 4E-06 51.1 15.1 158 35-218 16-184 (299)
287 PRK08233 hypothetical protein; 96.1 0.017 3.7E-07 54.6 7.4 24 37-60 3-26 (182)
288 COG1618 Predicted nucleotide k 96.1 0.0052 1.1E-07 54.1 3.4 25 38-62 6-30 (179)
289 COG1136 SalX ABC-type antimicr 96.1 0.054 1.2E-06 51.9 10.3 64 100-163 144-210 (226)
290 PRK11889 flhF flagellar biosyn 96.1 0.04 8.7E-07 57.1 10.1 90 36-127 240-331 (436)
291 PRK11608 pspF phage shock prot 96.1 0.012 2.5E-07 61.3 6.4 134 14-155 5-150 (326)
292 PRK05800 cobU adenosylcobinami 96.1 0.009 2E-07 55.2 5.0 80 39-125 3-85 (170)
293 COG1126 GlnQ ABC-type polar am 96.1 0.048 1E-06 50.9 9.5 122 38-162 29-202 (240)
294 PRK15429 formate hydrogenlyase 96.1 0.013 2.8E-07 67.9 7.4 134 14-155 375-520 (686)
295 COG1121 ZnuC ABC-type Mn/Zn tr 96.0 0.041 9E-07 53.5 9.4 120 38-159 31-202 (254)
296 PF13604 AAA_30: AAA domain; P 96.0 0.004 8.7E-08 59.4 2.5 108 37-156 18-131 (196)
297 PRK00771 signal recognition pa 96.0 0.059 1.3E-06 57.7 11.4 88 36-126 94-185 (437)
298 PLN03187 meiotic recombination 96.0 0.024 5.1E-07 58.6 8.1 58 36-94 125-186 (344)
299 PRK12723 flagellar biosynthesi 96.0 0.045 9.8E-07 57.6 10.2 89 36-127 173-265 (388)
300 cd03222 ABC_RNaseL_inhibitor T 95.9 0.044 9.5E-07 51.0 9.0 109 37-160 25-136 (177)
301 PRK13695 putative NTPase; Prov 95.9 0.012 2.6E-07 55.1 5.2 23 39-61 2-24 (174)
302 cd03230 ABC_DR_subfamily_A Thi 95.9 0.04 8.6E-07 51.5 8.6 117 38-160 27-159 (173)
303 KOG2123 Uncharacterized conser 95.9 0.001 2.2E-08 63.6 -2.1 82 420-510 35-123 (388)
304 PRK13531 regulatory ATPase Rav 95.8 0.0086 1.9E-07 63.8 4.1 53 13-68 18-70 (498)
305 KOG0733 Nuclear AAA ATPase (VC 95.8 0.12 2.6E-06 55.7 12.3 92 16-127 191-293 (802)
306 COG0572 Udk Uridine kinase [Nu 95.8 0.02 4.2E-07 54.1 5.9 79 35-117 6-85 (218)
307 cd03115 SRP The signal recogni 95.8 0.032 7E-07 52.1 7.6 22 39-60 2-23 (173)
308 TIGR02239 recomb_RAD51 DNA rep 95.8 0.028 6.1E-07 57.8 7.6 58 35-93 94-155 (316)
309 TIGR02974 phageshock_pspF psp 95.8 0.019 4E-07 59.7 6.3 131 17-155 1-143 (329)
310 PF00485 PRK: Phosphoribulokin 95.8 0.03 6.5E-07 53.5 7.4 81 39-121 1-88 (194)
311 cd01122 GP4d_helicase GP4d_hel 95.8 0.083 1.8E-06 53.6 11.1 52 37-91 30-81 (271)
312 COG1066 Sms Predicted ATP-depe 95.8 0.023 5.1E-07 58.2 6.7 81 38-127 94-179 (456)
313 PF12775 AAA_7: P-loop contain 95.7 0.011 2.4E-07 59.3 4.4 84 38-133 34-117 (272)
314 COG1419 FlhF Flagellar GTP-bin 95.7 0.037 8.1E-07 57.2 8.1 89 36-127 202-292 (407)
315 PF13238 AAA_18: AAA domain; P 95.7 0.007 1.5E-07 53.4 2.6 21 40-60 1-21 (129)
316 CHL00206 ycf2 Ycf2; Provisiona 95.7 0.21 4.5E-06 61.6 15.2 25 36-60 1629-1653(2281)
317 COG3640 CooC CO dehydrogenase 95.7 0.029 6.3E-07 52.9 6.6 42 39-81 2-43 (255)
318 PRK13539 cytochrome c biogenes 95.7 0.06 1.3E-06 52.0 9.2 63 109-174 138-202 (207)
319 PRK06696 uridine kinase; Valid 95.7 0.01 2.3E-07 58.0 4.0 27 34-60 19-45 (223)
320 TIGR02236 recomb_radA DNA repa 95.7 0.05 1.1E-06 56.4 9.2 57 36-93 94-154 (310)
321 cd02027 APSK Adenosine 5'-phos 95.7 0.06 1.3E-06 48.7 8.5 22 39-60 1-22 (149)
322 COG0464 SpoVK ATPases of the A 95.7 0.078 1.7E-06 59.1 11.2 132 35-187 274-424 (494)
323 cd02025 PanK Pantothenate kina 95.6 0.042 9.1E-07 53.4 7.9 22 39-60 1-22 (220)
324 COG5238 RNA1 Ran GTPase-activa 95.6 0.012 2.6E-07 56.3 3.9 84 423-514 27-130 (388)
325 cd00267 ABC_ATPase ABC (ATP-bi 95.6 0.026 5.6E-07 51.8 6.2 116 38-161 26-145 (157)
326 PRK12724 flagellar biosynthesi 95.6 0.036 7.9E-07 58.2 7.7 24 37-60 223-246 (432)
327 PRK12726 flagellar biosynthesi 95.6 0.059 1.3E-06 55.7 9.0 90 36-127 205-296 (407)
328 cd02019 NK Nucleoside/nucleoti 95.6 0.0082 1.8E-07 45.9 2.3 22 39-60 1-22 (69)
329 PRK12727 flagellar biosynthesi 95.6 0.038 8.2E-07 59.6 7.9 88 37-126 350-438 (559)
330 cd03229 ABC_Class3 This class 95.6 0.032 7E-07 52.4 6.8 120 38-160 27-165 (178)
331 PTZ00035 Rad51 protein; Provis 95.6 0.06 1.3E-06 55.9 9.3 57 36-93 117-177 (337)
332 KOG1051 Chaperone HSP104 and r 95.6 0.05 1.1E-06 62.4 9.2 119 14-143 561-687 (898)
333 PRK05703 flhF flagellar biosyn 95.6 0.082 1.8E-06 56.8 10.5 88 37-126 221-309 (424)
334 PRK14974 cell division protein 95.6 0.08 1.7E-06 54.6 10.0 89 36-127 139-233 (336)
335 KOG2123 Uncharacterized conser 95.6 0.0014 3E-08 62.8 -2.5 100 424-534 17-123 (388)
336 PF00154 RecA: recA bacterial 95.6 0.024 5.2E-07 57.6 6.0 83 36-125 52-140 (322)
337 PRK04301 radA DNA repair and r 95.5 0.052 1.1E-06 56.3 8.7 57 36-93 101-161 (317)
338 cd03281 ABC_MSH5_euk MutS5 hom 95.5 0.025 5.5E-07 54.7 5.9 23 37-59 29-51 (213)
339 cd01131 PilT Pilus retraction 95.5 0.024 5.2E-07 54.2 5.7 110 38-158 2-111 (198)
340 KOG2739 Leucine-rich acidic nu 95.5 0.0079 1.7E-07 57.6 2.3 14 478-491 89-102 (260)
341 PTZ00301 uridine kinase; Provi 95.5 0.024 5.3E-07 54.3 5.5 24 37-60 3-26 (210)
342 COG1703 ArgK Putative periplas 95.5 0.013 2.7E-07 57.5 3.5 57 33-89 47-103 (323)
343 TIGR00708 cobA cob(I)alamin ad 95.5 0.098 2.1E-06 47.9 9.1 118 37-156 5-140 (173)
344 TIGR03877 thermo_KaiC_1 KaiC d 95.5 0.062 1.3E-06 53.1 8.5 49 36-88 20-68 (237)
345 KOG1644 U2-associated snRNP A' 95.4 0.019 4E-07 52.8 4.3 55 458-514 43-98 (233)
346 cd03369 ABCC_NFT1 Domain 2 of 95.4 0.18 3.9E-06 48.7 11.6 23 38-60 35-57 (207)
347 PRK06217 hypothetical protein; 95.4 0.046 9.9E-07 51.6 7.2 23 39-61 3-25 (183)
348 PHA02244 ATPase-like protein 95.4 0.04 8.6E-07 56.7 7.0 44 14-60 95-142 (383)
349 TIGR00554 panK_bact pantothena 95.4 0.066 1.4E-06 54.0 8.6 26 35-60 60-85 (290)
350 COG2842 Uncharacterized ATPase 95.4 0.08 1.7E-06 52.1 8.7 123 12-144 69-193 (297)
351 PLN03186 DNA repair protein RA 95.4 0.061 1.3E-06 55.7 8.4 58 36-94 122-183 (342)
352 KOG0733 Nuclear AAA ATPase (VC 95.4 0.19 4.2E-06 54.2 12.0 130 37-187 545-693 (802)
353 KOG1532 GTPase XAB1, interacts 95.4 0.089 1.9E-06 50.6 8.6 86 35-120 17-120 (366)
354 PRK00889 adenylylsulfate kinas 95.4 0.038 8.2E-07 51.8 6.4 26 36-61 3-28 (175)
355 TIGR00064 ftsY signal recognit 95.3 0.064 1.4E-06 53.9 8.3 89 35-126 70-164 (272)
356 TIGR01817 nifA Nif-specific re 95.3 0.025 5.4E-07 63.5 6.0 135 13-155 194-340 (534)
357 KOG0739 AAA+-type ATPase [Post 95.3 0.23 4.9E-06 48.6 11.3 45 16-60 134-189 (439)
358 COG0563 Adk Adenylate kinase a 95.3 0.026 5.7E-07 52.5 5.1 22 39-60 2-23 (178)
359 KOG0729 26S proteasome regulat 95.3 0.023 5E-07 54.1 4.6 26 35-60 209-234 (435)
360 PRK05480 uridine/cytidine kina 95.3 0.015 3.3E-07 56.3 3.7 26 35-60 4-29 (209)
361 PRK05022 anaerobic nitric oxid 95.3 0.036 7.8E-07 61.6 7.0 135 13-155 185-331 (509)
362 COG1428 Deoxynucleoside kinase 95.3 0.012 2.6E-07 54.8 2.6 26 37-62 4-29 (216)
363 cd01121 Sms Sms (bacterial rad 95.3 0.058 1.2E-06 56.7 8.0 81 37-125 82-167 (372)
364 PRK10733 hflB ATP-dependent me 95.3 0.12 2.6E-06 59.0 11.2 130 38-187 186-336 (644)
365 TIGR00235 udk uridine kinase. 95.3 0.016 3.6E-07 55.9 3.7 26 35-60 4-29 (207)
366 PRK10867 signal recognition pa 95.2 0.064 1.4E-06 57.3 8.2 25 36-60 99-123 (433)
367 COG0396 sufC Cysteine desulfur 95.2 0.18 4E-06 47.6 10.1 65 102-166 148-214 (251)
368 cd03282 ABC_MSH4_euk MutS4 hom 95.2 0.029 6.3E-07 53.7 5.1 118 37-163 29-158 (204)
369 cd03244 ABCC_MRP_domain2 Domai 95.2 0.16 3.4E-06 49.8 10.5 23 38-60 31-53 (221)
370 KOG1947 Leucine rich repeat pr 95.2 0.003 6.6E-08 70.5 -1.9 43 738-780 400-444 (482)
371 PF00910 RNA_helicase: RNA hel 95.2 0.011 2.3E-07 50.1 1.9 21 40-60 1-21 (107)
372 COG4618 ArpD ABC-type protease 95.2 0.063 1.4E-06 56.6 7.6 22 38-59 363-384 (580)
373 cd03217 ABC_FeS_Assembly ABC-t 95.2 0.084 1.8E-06 50.7 8.2 24 37-60 26-49 (200)
374 PRK05917 DNA polymerase III su 95.2 0.17 3.7E-06 50.8 10.4 128 26-173 8-154 (290)
375 PF07726 AAA_3: ATPase family 95.1 0.009 2E-07 51.0 1.2 27 40-68 2-28 (131)
376 KOG0731 AAA+-type ATPase conta 95.1 0.29 6.2E-06 55.2 13.1 178 13-214 309-519 (774)
377 TIGR03878 thermo_KaiC_2 KaiC d 95.1 0.054 1.2E-06 54.2 7.0 40 36-77 35-74 (259)
378 PF13671 AAA_33: AAA domain; P 95.1 0.017 3.7E-07 52.1 3.1 22 39-60 1-22 (143)
379 KOG0734 AAA+-type ATPase conta 95.1 0.26 5.6E-06 52.3 11.8 48 14-61 303-361 (752)
380 PRK06547 hypothetical protein; 95.1 0.021 4.6E-07 52.9 3.6 26 35-60 13-38 (172)
381 PRK10820 DNA-binding transcrip 95.1 0.047 1E-06 60.7 7.0 134 13-155 202-348 (520)
382 TIGR00959 ffh signal recogniti 95.1 0.076 1.6E-06 56.8 8.2 25 36-60 98-122 (428)
383 PRK14721 flhF flagellar biosyn 95.0 0.12 2.6E-06 54.9 9.5 88 36-125 190-278 (420)
384 PRK06762 hypothetical protein; 95.0 0.018 3.8E-07 53.5 3.1 23 38-60 3-25 (166)
385 PF01583 APS_kinase: Adenylyls 95.0 0.028 6.2E-07 50.5 4.1 35 38-74 3-37 (156)
386 TIGR02858 spore_III_AA stage I 95.0 0.074 1.6E-06 53.1 7.4 114 35-158 109-231 (270)
387 PF03308 ArgK: ArgK protein; 95.0 0.03 6.5E-07 54.2 4.4 53 35-87 27-79 (266)
388 COG5635 Predicted NTPase (NACH 95.0 0.022 4.8E-07 67.1 4.3 198 37-238 222-446 (824)
389 cd03232 ABC_PDR_domain2 The pl 95.0 0.11 2.3E-06 49.6 8.2 24 37-60 33-56 (192)
390 KOG1970 Checkpoint RAD17-RFC c 95.0 0.18 3.9E-06 53.7 10.3 36 34-73 107-142 (634)
391 TIGR00382 clpX endopeptidase C 94.9 0.13 2.7E-06 54.7 9.3 47 14-60 76-139 (413)
392 cd03254 ABCC_Glucan_exporter_l 94.9 0.21 4.5E-06 49.2 10.6 23 38-60 30-52 (229)
393 cd03215 ABC_Carb_Monos_II This 94.9 0.15 3.3E-06 48.1 9.1 23 38-60 27-49 (182)
394 PRK05439 pantothenate kinase; 94.9 0.1 2.2E-06 53.1 8.1 27 34-60 83-109 (311)
395 KOG3347 Predicted nucleotide k 94.9 0.031 6.6E-07 48.5 3.7 73 38-120 8-80 (176)
396 COG0467 RAD55 RecA-superfamily 94.9 0.052 1.1E-06 54.6 6.2 52 35-90 21-72 (260)
397 PRK05973 replicative DNA helic 94.9 0.11 2.3E-06 50.7 7.9 47 37-87 64-110 (237)
398 COG1224 TIP49 DNA helicase TIP 94.9 0.037 8.1E-07 55.4 4.8 54 13-68 37-96 (450)
399 PRK15455 PrkA family serine pr 94.8 0.024 5.1E-07 61.5 3.6 46 15-60 76-126 (644)
400 PRK03846 adenylylsulfate kinas 94.8 0.066 1.4E-06 51.3 6.5 26 35-60 22-47 (198)
401 PRK03839 putative kinase; Prov 94.8 0.02 4.2E-07 54.0 2.8 22 39-60 2-23 (180)
402 COG2401 ABC-type ATPase fused 94.8 0.032 6.9E-07 57.0 4.2 129 38-167 410-579 (593)
403 KOG0728 26S proteasome regulat 94.8 0.75 1.6E-05 43.8 12.8 140 26-186 171-331 (404)
404 PRK08972 fliI flagellum-specif 94.8 0.21 4.6E-06 53.0 10.4 85 37-125 162-261 (444)
405 PRK07667 uridine kinase; Provi 94.8 0.028 6E-07 53.5 3.7 26 35-60 15-40 (193)
406 cd01132 F1_ATPase_alpha F1 ATP 94.8 0.06 1.3E-06 53.2 6.0 85 37-125 69-170 (274)
407 PRK04040 adenylate kinase; Pro 94.8 0.022 4.9E-07 53.7 2.9 23 38-60 3-25 (188)
408 PRK06002 fliI flagellum-specif 94.7 0.092 2E-06 55.9 7.7 86 37-125 165-263 (450)
409 TIGR02868 CydC thiol reductant 94.7 0.22 4.7E-06 56.2 11.4 24 37-60 361-384 (529)
410 PRK05986 cob(I)alamin adenolsy 94.7 0.13 2.8E-06 47.9 7.6 119 36-156 21-158 (191)
411 TIGR03881 KaiC_arch_4 KaiC dom 94.7 0.12 2.6E-06 50.9 8.1 40 36-77 19-58 (229)
412 TIGR01360 aden_kin_iso1 adenyl 94.7 0.029 6.2E-07 53.4 3.5 25 36-60 2-26 (188)
413 COG2274 SunT ABC-type bacterio 94.7 0.23 4.9E-06 56.9 11.1 23 38-60 500-522 (709)
414 PRK14723 flhF flagellar biosyn 94.6 0.15 3.2E-06 58.1 9.4 87 37-126 185-273 (767)
415 PHA00729 NTP-binding motif con 94.6 0.031 6.7E-07 53.5 3.6 25 36-60 16-40 (226)
416 cd03213 ABCG_EPDR ABCG transpo 94.6 0.16 3.5E-06 48.4 8.6 24 37-60 35-58 (194)
417 PF00006 ATP-synt_ab: ATP synt 94.6 0.11 2.4E-06 49.9 7.3 84 38-125 16-114 (215)
418 PRK12597 F0F1 ATP synthase sub 94.6 0.056 1.2E-06 58.0 5.8 88 37-125 143-246 (461)
419 PRK08533 flagellar accessory p 94.6 0.16 3.4E-06 49.8 8.6 48 37-88 24-71 (230)
420 PRK15453 phosphoribulokinase; 94.6 0.16 3.6E-06 50.2 8.5 25 36-60 4-28 (290)
421 PRK00625 shikimate kinase; Pro 94.6 0.023 5.1E-07 52.6 2.6 22 39-60 2-23 (173)
422 cd01125 repA Hexameric Replica 94.6 0.21 4.5E-06 49.5 9.6 22 39-60 3-24 (239)
423 PRK13765 ATP-dependent proteas 94.6 0.041 8.9E-07 61.8 4.9 77 13-94 29-105 (637)
424 TIGR00390 hslU ATP-dependent p 94.6 0.071 1.5E-06 55.8 6.3 47 14-60 11-70 (441)
425 cd02028 UMPK_like Uridine mono 94.6 0.049 1.1E-06 51.0 4.8 22 39-60 1-22 (179)
426 PRK04328 hypothetical protein; 94.6 0.097 2.1E-06 52.1 7.1 40 36-77 22-61 (249)
427 PRK09544 znuC high-affinity zi 94.5 0.2 4.3E-06 50.0 9.3 24 37-60 30-53 (251)
428 PTZ00088 adenylate kinase 1; P 94.5 0.036 7.9E-07 53.9 3.9 21 40-60 9-29 (229)
429 cd03245 ABCC_bacteriocin_expor 94.5 0.27 5.9E-06 48.0 10.1 24 37-60 30-53 (220)
430 PTZ00185 ATPase alpha subunit; 94.5 0.13 2.8E-06 55.1 8.0 90 37-126 189-299 (574)
431 cd03233 ABC_PDR_domain1 The pl 94.5 0.29 6.4E-06 47.0 10.1 24 37-60 33-56 (202)
432 PRK08927 fliI flagellum-specif 94.5 0.15 3.2E-06 54.3 8.5 86 36-125 157-257 (442)
433 cd03240 ABC_Rad50 The catalyti 94.5 0.17 3.7E-06 48.6 8.4 53 108-160 131-187 (204)
434 KOG1947 Leucine rich repeat pr 94.5 0.01 2.2E-07 66.3 -0.2 96 419-517 207-308 (482)
435 PF13481 AAA_25: AAA domain; P 94.5 0.15 3.2E-06 48.7 8.0 41 38-78 33-81 (193)
436 TIGR01313 therm_gnt_kin carboh 94.4 0.063 1.4E-06 49.6 5.2 21 40-60 1-21 (163)
437 PF13245 AAA_19: Part of AAA d 94.4 0.061 1.3E-06 41.9 4.2 24 37-60 10-34 (76)
438 TIGR02322 phosphon_PhnN phosph 94.4 0.031 6.7E-07 52.6 3.1 23 38-60 2-24 (179)
439 PRK06995 flhF flagellar biosyn 94.4 0.15 3.3E-06 55.0 8.6 88 37-126 256-344 (484)
440 COG1117 PstB ABC-type phosphat 94.4 0.46 9.9E-06 44.5 10.2 43 15-60 14-56 (253)
441 cd03253 ABCC_ATM1_transporter 94.4 0.33 7.1E-06 48.1 10.5 23 38-60 28-50 (236)
442 cd02024 NRK1 Nicotinamide ribo 94.4 0.027 5.7E-07 52.8 2.5 22 39-60 1-22 (187)
443 PRK00131 aroK shikimate kinase 94.4 0.03 6.6E-07 52.4 2.9 24 37-60 4-27 (175)
444 COG4088 Predicted nucleotide k 94.4 0.087 1.9E-06 48.6 5.5 23 38-60 2-24 (261)
445 cd01135 V_A-ATPase_B V/A-type 94.4 0.18 3.9E-06 49.9 8.2 89 37-125 69-175 (276)
446 PF01078 Mg_chelatase: Magnesi 94.4 0.044 9.6E-07 51.5 3.9 44 14-60 2-45 (206)
447 cd02023 UMPK Uridine monophosp 94.4 0.027 5.8E-07 54.1 2.5 22 39-60 1-22 (198)
448 cd03250 ABCC_MRP_domain1 Domai 94.4 0.68 1.5E-05 44.6 12.3 24 37-60 31-54 (204)
449 PF13504 LRR_7: Leucine rich r 94.3 0.028 6.1E-07 29.3 1.4 16 458-473 2-17 (17)
450 TIGR03522 GldA_ABC_ATP gliding 94.3 0.3 6.5E-06 50.3 10.4 24 37-60 28-51 (301)
451 cd00227 CPT Chloramphenicol (C 94.3 0.031 6.7E-07 52.4 2.8 23 38-60 3-25 (175)
452 cd01134 V_A-ATPase_A V/A-type 94.3 0.16 3.5E-06 51.8 7.9 48 37-88 157-205 (369)
453 PF00625 Guanylate_kin: Guanyl 94.3 0.04 8.8E-07 52.0 3.6 38 37-76 2-39 (183)
454 PRK09280 F0F1 ATP synthase sub 94.3 0.18 4E-06 53.9 8.7 88 37-125 144-247 (463)
455 COG1124 DppF ABC-type dipeptid 94.3 0.059 1.3E-06 51.4 4.5 23 38-60 34-56 (252)
456 cd00544 CobU Adenosylcobinamid 94.3 0.19 4E-06 46.4 7.8 79 40-125 2-82 (169)
457 PRK11823 DNA repair protein Ra 94.3 0.19 4E-06 54.6 8.9 81 37-125 80-165 (446)
458 KOG2739 Leucine-rich acidic nu 94.3 0.027 5.9E-07 54.0 2.2 64 453-518 39-104 (260)
459 COG1936 Predicted nucleotide k 94.2 0.039 8.4E-07 49.5 3.0 20 39-58 2-21 (180)
460 TIGR03740 galliderm_ABC gallid 94.2 0.19 4.2E-06 49.2 8.4 24 37-60 26-49 (223)
461 COG0194 Gmk Guanylate kinase [ 94.2 0.042 9E-07 50.2 3.2 23 38-60 5-27 (191)
462 TIGR01359 UMP_CMP_kin_fam UMP- 94.2 0.028 6E-07 53.2 2.3 22 39-60 1-22 (183)
463 cd02021 GntK Gluconate kinase 94.2 0.032 6.9E-07 50.7 2.5 22 39-60 1-22 (150)
464 TIGR02329 propionate_PrpR prop 94.2 0.07 1.5E-06 58.9 5.5 46 15-60 212-258 (526)
465 PRK08149 ATP synthase SpaL; Va 94.2 0.17 3.8E-06 53.7 8.2 85 37-125 151-250 (428)
466 PRK09580 sufC cysteine desulfu 94.2 0.31 6.7E-06 48.7 9.8 24 37-60 27-50 (248)
467 TIGR03263 guanyl_kin guanylate 94.2 0.04 8.6E-07 52.0 3.2 23 38-60 2-24 (180)
468 PF08433 KTI12: Chromatin asso 94.1 0.043 9.2E-07 54.9 3.5 23 38-60 2-24 (270)
469 PRK10751 molybdopterin-guanine 94.1 0.055 1.2E-06 49.7 3.9 26 36-61 5-30 (173)
470 cd03252 ABCC_Hemolysin The ABC 94.1 0.37 8.1E-06 47.7 10.3 24 37-60 28-51 (237)
471 CHL00081 chlI Mg-protoporyphyr 94.1 0.046 9.9E-07 56.5 3.7 47 13-60 15-61 (350)
472 PF06309 Torsin: Torsin; Inte 94.1 0.08 1.7E-06 45.2 4.5 47 14-60 24-76 (127)
473 cd00071 GMPK Guanosine monopho 94.1 0.041 9E-07 48.9 3.0 21 40-60 2-22 (137)
474 PRK09519 recA DNA recombinatio 94.1 0.14 2.9E-06 58.6 7.7 84 36-126 59-148 (790)
475 smart00534 MUTSac ATPase domai 94.1 0.33 7.1E-06 45.8 9.3 21 39-59 1-21 (185)
476 PRK11388 DNA-binding transcrip 94.1 0.093 2E-06 60.5 6.6 131 14-155 324-466 (638)
477 TIGR00764 lon_rel lon-related 94.1 0.097 2.1E-06 59.1 6.5 76 14-94 17-92 (608)
478 PRK14737 gmk guanylate kinase; 94.0 0.053 1.1E-06 51.1 3.8 25 36-60 3-27 (186)
479 cd00820 PEPCK_HprK Phosphoenol 94.0 0.052 1.1E-06 45.2 3.2 22 37-58 15-36 (107)
480 PRK06936 type III secretion sy 94.0 0.36 7.8E-06 51.4 10.2 86 36-125 161-261 (439)
481 PF03205 MobB: Molybdopterin g 94.0 0.066 1.4E-06 47.7 4.1 39 38-77 1-39 (140)
482 PRK10416 signal recognition pa 94.0 0.19 4.2E-06 51.7 8.0 26 36-61 113-138 (318)
483 TIGR00455 apsK adenylylsulfate 94.0 0.25 5.5E-06 46.6 8.4 25 36-60 17-41 (184)
484 PRK10875 recD exonuclease V su 94.0 0.14 3.1E-06 57.5 7.6 117 37-156 167-302 (615)
485 PF03266 NTPase_1: NTPase; In 94.0 0.04 8.6E-07 50.8 2.7 22 40-61 2-23 (168)
486 cd01124 KaiC KaiC is a circadi 94.0 0.088 1.9E-06 49.9 5.2 45 39-87 1-45 (187)
487 KOG0727 26S proteasome regulat 93.9 0.051 1.1E-06 51.4 3.3 31 35-67 187-217 (408)
488 PRK05922 type III secretion sy 93.9 0.22 4.7E-06 53.0 8.4 85 37-125 157-256 (434)
489 TIGR03498 FliI_clade3 flagella 93.9 0.24 5.2E-06 52.7 8.7 86 37-125 140-239 (418)
490 KOG0736 Peroxisome assembly fa 93.9 0.36 7.9E-06 53.6 10.1 152 40-211 708-881 (953)
491 PRK07594 type III secretion sy 93.9 0.31 6.8E-06 51.9 9.5 86 36-125 154-254 (433)
492 COG2019 AdkA Archaeal adenylat 93.9 0.052 1.1E-06 48.2 3.1 24 37-60 4-27 (189)
493 cd02029 PRK_like Phosphoribulo 93.9 0.18 3.8E-06 49.6 7.0 77 39-117 1-85 (277)
494 PF06068 TIP49: TIP49 C-termin 93.9 0.053 1.2E-06 55.3 3.5 52 14-67 23-80 (398)
495 TIGR01425 SRP54_euk signal rec 93.9 0.27 5.8E-06 52.4 8.9 25 36-60 99-123 (429)
496 PRK14738 gmk guanylate kinase; 93.9 0.062 1.4E-06 51.7 3.9 26 35-60 11-36 (206)
497 PRK12678 transcription termina 93.8 0.09 2E-06 56.9 5.3 89 36-125 415-512 (672)
498 TIGR03575 selen_PSTK_euk L-ser 93.8 0.16 3.4E-06 52.4 7.0 36 40-76 2-37 (340)
499 PRK06793 fliI flagellum-specif 93.8 0.19 4E-06 53.6 7.6 89 36-127 155-257 (432)
500 TIGR01040 V-ATPase_V1_B V-type 93.8 0.15 3.2E-06 54.2 6.8 89 37-125 141-256 (466)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-74 Score=651.60 Aligned_cols=617 Identities=31% Similarity=0.438 Sum_probs=479.1
Q ss_pred cccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcc-ccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCC
Q 003773 18 EGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEG-VKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSA 96 (796)
Q Consensus 18 vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 96 (796)
||.|+.++++...+-.++. ++++|+||||+||||||+.++++.. ++.+||.++||.+|++++...++++|++.++...
T Consensus 161 VG~e~~~~kl~~~L~~d~~-~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~ 239 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV-GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLD 239 (889)
T ss_pred ccHHHHHHHHHHHhccCCC-CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCC
Confidence 9999999988877654433 8999999999999999999999987 8999999999999999999999999999998754
Q ss_pred CCCcc--HHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecchhhhhc-cCccceEEccCC
Q 003773 97 SSLGE--FQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDRSVALQ-MGSIDIISVKEL 173 (796)
Q Consensus 97 ~~~~~--~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~~~~~-~~~~~~~~l~~l 173 (796)
....+ .+++...+.+.|+++||+||+||+|+. .+|+.+..++|....||||++|||+++|+.. ++....+++..|
T Consensus 240 ~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L 317 (889)
T KOG4658|consen 240 EEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECL 317 (889)
T ss_pred cccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccccccc
Confidence 44333 368888999999999999999999986 4599999999999899999999999999998 777889999999
Q ss_pred ChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHHHHHhcCCCHHHHHHHHhhhhccc-c---ccCCC
Q 003773 174 GEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLLRSKRTVSEWQRILDSEMWKV-E---EIGKG 249 (796)
Q Consensus 174 ~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w~~~l~~~~~~~-~---~~~~~ 249 (796)
+.+|||+||++.++.... ..++.++++|++|+++|+|+|||++++|+.|+.+.+.++|+++.+...+.+ . ...+.
T Consensus 318 ~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~ 396 (889)
T KOG4658|consen 318 TPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEES 396 (889)
T ss_pred CccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhh
Confidence 999999999999975433 344558999999999999999999999999999999999999999876652 2 22467
Q ss_pred ccchhhhhccCCCChhhhhhHHhhhcCCCCCceecHHHHHHHHHHcCCcCCCC-ChhHHHHHHHHHHHHHhccccccccc
Q 003773 250 LLPPLLLSYNDLPSSSMVKRCFSYCSVFPKDYNIRKEELITLWMAQCYLNSEE-DEEMEIIGEEYFNILATRSFFQEFVK 328 (796)
Q Consensus 250 ~~~~l~~s~~~L~~~~~~k~~fl~~~~fp~~~~i~~~~Li~~wia~g~i~~~~-~~~~~~~~~~~l~~L~~~~ll~~~~~ 328 (796)
+++++.+||+.||+ ++|.||+|||.||+|+.|+++.|+.+|+||||+.+.. +..+++.|..|+.+|+.++++.....
T Consensus 397 i~~iLklSyd~L~~--~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~ 474 (889)
T KOG4658|consen 397 ILPILKLSYDNLPE--ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD 474 (889)
T ss_pred hHHhhhccHhhhhH--HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc
Confidence 89999999999996 9999999999999999999999999999999998844 57899999999999999999987654
Q ss_pred cCCCCeeeEEecHHHHHHHHHhhc-----cceEEEEeC-CccccccccCCCceEEEEEeecCCCCCCCCCCCCCCccEEE
Q 003773 329 DYDDNVMSCKMHDIVHDFAQLVSR-----EECLWVEIN-SRKESVINSFGEKVRHLGLNFEGGASFPMSTPEFNRLRTLL 402 (796)
Q Consensus 329 ~~~~~~~~~~~h~lv~~~~~~i~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~ 402 (796)
. +....|+|||+++++|.+++. .+....... +....+....+..+|++++..+........ ...+++++|.
T Consensus 475 ~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~-~~~~~L~tLl 551 (889)
T KOG4658|consen 475 E--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGS-SENPKLRTLL 551 (889)
T ss_pred c--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCC-CCCCccceEE
Confidence 3 667789999999999999999 555444332 333333444567889999998877643333 3455899998
Q ss_pred EecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCcccccccccccccCccccceEecCCCCccccchhhhccCCc
Q 003773 403 IYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNL 482 (796)
Q Consensus 403 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L 482 (796)
+..... ....+...+|..++.||+|||++ +....++|.+|++|.+||||+++++.+..+|.++++|.+|
T Consensus 552 l~~n~~----~l~~is~~ff~~m~~LrVLDLs~-------~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 552 LQRNSD----WLLEISGEFFRSLPLLRVLDLSG-------NSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKL 620 (889)
T ss_pred Eeecch----hhhhcCHHHHhhCcceEEEECCC-------CCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhh
Confidence 877531 23555677799999999999997 6678899999999999999999999999999999999999
Q ss_pred cEeeccccccccccchhhccccCCCeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCc-
Q 003773 483 QKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRE- 561 (796)
Q Consensus 483 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~- 561 (796)
.+|++..+..+..+|..+..|.+|++|.+.... ...-...++.+.+|++|..+....... ..+..+..+..|..
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s~----~~~e~l~~~~~L~~~ 695 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISSV----LLLEDLLGMTRLRSL 695 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecchh----HhHhhhhhhHHHHHH
Confidence 999999988887787777779999999997653 111112233444444444323322211 11122222222221
Q ss_pred ---ceecCCCCCCChhhhhhccccccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCC
Q 003773 562 ---CRVEGLSNVSHVDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIF 638 (796)
Q Consensus 562 ---l~l~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 638 (796)
+.+.+ .........+..+.+|+.|.+..+........... ...... .++++..+.+.++.....
T Consensus 696 ~~~l~~~~-----~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~-----~~~~~~---~f~~l~~~~~~~~~~~r~ 762 (889)
T KOG4658|consen 696 LQSLSIEG-----CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEE-----SLIVLL---CFPNLSKVSILNCHMLRD 762 (889)
T ss_pred hHhhhhcc-----cccceeecccccccCcceEEEEcCCCchhhccccc-----ccchhh---hHHHHHHHHhhccccccc
Confidence 12111 11223344577788999999988775432110000 000000 234566666666666677
Q ss_pred CchhhhccCCcEEEEcCCCCCCCCCc-cccc-cccc
Q 003773 639 PKWLTLLTNLRELKLFSCVNCEHLPP-LGKL-LLEK 672 (796)
Q Consensus 639 p~~~~~l~~L~~L~L~~~~~~~~lp~-l~~l-~L~~ 672 (796)
+.|....++|+.|.+..|...+.+.+ ...+ .++.
T Consensus 763 l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~ 798 (889)
T KOG4658|consen 763 LTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE 798 (889)
T ss_pred cchhhccCcccEEEEecccccccCCCHHHHhhhccc
Confidence 88888899999999999988776544 4444 4554
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.3e-64 Score=602.41 Aligned_cols=692 Identities=20% Similarity=0.264 Sum_probs=469.6
Q ss_pred hhhhhhhccc--cccCcccccHHHHHHHhcccC-CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEe---
Q 003773 2 EDVLEEWTTA--RLKLQIEGLDDDNTLALASSE-QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCV--- 75 (796)
Q Consensus 2 ~~~~~~~~~~--~~~~~~vGr~~~~~~l~~~~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~--- 75 (796)
+||.++.... .+.+++|||++.++++...+. ..+++++|+||||||+||||||+++|++ ....|++.+|+..
T Consensus 169 ~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~--l~~~F~g~vfv~~~~v 246 (1153)
T PLN03210 169 NDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSR--LSRQFQSSVFIDRAFI 246 (1153)
T ss_pred HHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHH--HhhcCCeEEEeecccc
Confidence 4566666433 345679999999996654432 3457899999999999999999999997 7788998888742
Q ss_pred CCc-----------CC-HHHHHHHHHHHhccCC-CCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccC
Q 003773 76 SDA-----------FE-EIRIAKAILEVLDKSA-SSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKN 142 (796)
Q Consensus 76 ~~~-----------~~-~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~ 142 (796)
... +. ...++++++..+.... ..... ...+++.++++|+||||||||+ ...|+.+.....+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~ 320 (1153)
T PLN03210 247 SKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDD--QDVLDALAGQTQW 320 (1153)
T ss_pred ccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCcc
Confidence 110 00 1234444444432221 11111 2456778999999999999965 4578888777777
Q ss_pred CCCCcEEEEEecchhhhhccCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHHHH
Q 003773 143 GHHESKILITTRDRSVALQMGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNL 222 (796)
Q Consensus 143 ~~~gs~iiiTsr~~~~~~~~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~ 222 (796)
.++|++||||||+++++..++....|+++.++.++|++||+++||++.. +++++.+++++|+++|+|+||||+++|++
T Consensus 321 ~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~ 398 (1153)
T PLN03210 321 FGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSY 398 (1153)
T ss_pred CCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 7899999999999999887777789999999999999999999997543 34567889999999999999999999999
Q ss_pred HhcCCCHHHHHHHHhhhhccccccCCCccchhhhhccCCCChhhhhhHHhhhcCCCCCceecHHHHHHHHHHcCCcCCCC
Q 003773 223 LRSKRTVSEWQRILDSEMWKVEEIGKGLLPPLLLSYNDLPSSSMVKRCFSYCSVFPKDYNIRKEELITLWMAQCYLNSEE 302 (796)
Q Consensus 223 l~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~k~~fl~~~~fp~~~~i~~~~Li~~wia~g~i~~~~ 302 (796)
|+++ +..+|..++++.... .+.++.++|++||++|++. ..|.||+++|+||.+..+ ..+..|.+++.+..
T Consensus 399 L~~k-~~~~W~~~l~~L~~~---~~~~I~~~L~~SYd~L~~~-~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~-- 468 (1153)
T PLN03210 399 LRGR-DKEDWMDMLPRLRNG---LDGKIEKTLRVSYDGLNNK-KDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV-- 468 (1153)
T ss_pred HcCC-CHHHHHHHHHHHHhC---ccHHHHHHHHHhhhccCcc-chhhhhheehhhcCCCCH---HHHHHHHHhcCCCc--
Confidence 9976 789999999876542 2356899999999999862 489999999999988754 34667777765532
Q ss_pred ChhHHHHHHHHHHHHHhccccccccccCCCCeeeEEecHHHHHHHHHhhccce--------EEEEeCCccccccccCCCc
Q 003773 303 DEEMEIIGEEYFNILATRSFFQEFVKDYDDNVMSCKMHDIVHDFAQLVSREEC--------LWVEINSRKESVINSFGEK 374 (796)
Q Consensus 303 ~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~h~lv~~~~~~i~~~~~--------~~~~~~~~~~~~~~~~~~~ 374 (796)
+..++.|+++++++... ..++||++++++++.+++++. +|...+.......+.....
T Consensus 469 --------~~~l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~ 533 (1153)
T PLN03210 469 --------NIGLKNLVDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKK 533 (1153)
T ss_pred --------hhChHHHHhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccce
Confidence 23488899999997532 247999999999999987653 2222111112223445667
Q ss_pred eEEEEEeecCCCCCCCCCCCCCCccEEEEecCCCC----CCCCchhhHHHhhhc-CcccceeeecccccCCCcccccccc
Q 003773 375 VRHLGLNFEGGASFPMSTPEFNRLRTLLIYDLSPY----SPSLNGSILVELFSK-VACLRALVIRQWFVPLDDQNFIREI 449 (796)
Q Consensus 375 ~~~l~l~~~~~~~~~~~~~~~~~l~~L~~~~l~~~----~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~l 449 (796)
++.++++.............|.++++|+.+.+... .......++.. |.. ...||.|++. ++.+..+
T Consensus 534 v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~-~~~lp~~Lr~L~~~--------~~~l~~l 604 (1153)
T PLN03210 534 VLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEG-FDYLPPKLRLLRWD--------KYPLRCM 604 (1153)
T ss_pred eeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcc-hhhcCcccEEEEec--------CCCCCCC
Confidence 88888887665543333344555555555544210 01111122233 333 3468888887 5566677
Q ss_pred cccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhccccCCCeeecCCccccccCcccCCCCCC
Q 003773 450 PENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTEKLKYLPIGISRLTS 529 (796)
Q Consensus 450 p~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~ 529 (796)
|..+ ...+|++|++++|.+..+|..+..+++|+.|+|++|..+..+|. +..+++|++|++++|..+..+|..++++++
T Consensus 605 P~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~ 682 (1153)
T PLN03210 605 PSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNK 682 (1153)
T ss_pred CCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCC
Confidence 7665 46777777777777777777777777777777777766666664 667777777777777777777777777777
Q ss_pred cccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhccccccccccceEEEeccccCCCCCcC-c--
Q 003773 530 LRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEG-R-- 606 (796)
Q Consensus 530 L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~-- 606 (796)
|+.|++..+ ......+..+ ++++|+.+.+.++.....++. ...+|+.|++..+.+........ .
T Consensus 683 L~~L~L~~c--~~L~~Lp~~i----~l~sL~~L~Lsgc~~L~~~p~-------~~~nL~~L~L~~n~i~~lP~~~~l~~L 749 (1153)
T PLN03210 683 LEDLDMSRC--ENLEILPTGI----NLKSLYRLNLSGCSRLKSFPD-------ISTNISWLDLDETAIEEFPSNLRLENL 749 (1153)
T ss_pred CCEEeCCCC--CCcCccCCcC----CCCCCCEEeCCCCCCcccccc-------ccCCcCeeecCCCcccccccccccccc
Confidence 777764321 1111112111 344455555554433222211 12344445544443221110000 0
Q ss_pred ----cCchhHHHHH--------hhCCCCCCCcEEEEeecC-CCCCCchhhhccCCcEEEEcCCCCCCCCCccccc-cccc
Q 003773 607 ----RKNEKDKQLL--------EALQPPLNVEELWILFYG-GNIFPKWLTLLTNLRELKLFSCVNCEHLPPLGKL-LLEK 672 (796)
Q Consensus 607 ----~~~~~~~~~~--------~~l~~~~~L~~L~l~~~~-~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~l~~l-~L~~ 672 (796)
........+. .....+++|+.|++++|. ...+|.+++.+++|+.|+|++|..++.+|....+ +|+.
T Consensus 750 ~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~ 829 (1153)
T PLN03210 750 DELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLES 829 (1153)
T ss_pred ccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCE
Confidence 0000000000 011234688889888875 4457888888999999999999888888875567 8899
Q ss_pred eeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeeccccccccccccccccccccCCCCccceeeccCCCCC
Q 003773 673 LTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKL 752 (796)
Q Consensus 673 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 752 (796)
|++++|..+..++. ..++|+.|+++++ .++. .|..+..+++|+.|+|++|+++
T Consensus 830 L~Ls~c~~L~~~p~--------------------~~~nL~~L~Ls~n-~i~~------iP~si~~l~~L~~L~L~~C~~L 882 (1153)
T PLN03210 830 LDLSGCSRLRTFPD--------------------ISTNISDLNLSRT-GIEE------VPWWIEKFSNLSFLDMNGCNNL 882 (1153)
T ss_pred EECCCCCccccccc--------------------cccccCEeECCCC-CCcc------ChHHHhcCCCCCEEECCCCCCc
Confidence 99998876654432 3357888877665 4443 2667788999999999999999
Q ss_pred CCCCcCCCCCCCccEEEEcCCCchhhc
Q 003773 753 NVLPDHLLQTTTLQELSIRGCPILEER 779 (796)
Q Consensus 753 ~~lp~~~~~l~~L~~L~l~~~~~l~~~ 779 (796)
+.+|..+..+++|+.+++++|+.|++.
T Consensus 883 ~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 883 QRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CccCcccccccCCCeeecCCCcccccc
Confidence 999888888899999999999988753
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1e-41 Score=351.17 Aligned_cols=278 Identities=37% Similarity=0.592 Sum_probs=221.6
Q ss_pred cHHHHHHHhcccCC-CCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCC-
Q 003773 20 LDDDNTLALASSEQ-QKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSAS- 97 (796)
Q Consensus 20 r~~~~~~l~~~~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~- 97 (796)
||.+++++.+.+.. ..+.++|+|+|+||+||||||.+++++...+.+|+.++|+.++...+...+++.|+++++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78899977776643 3678999999999999999999999987788999999999999998889999999999987643
Q ss_pred --CCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecchhhhhccCc-cceEEccCCC
Q 003773 98 --SLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDRSVALQMGS-IDIISVKELG 174 (796)
Q Consensus 98 --~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~~~~~~~~-~~~~~l~~l~ 174 (796)
...+.++....+.+.+.++++||||||||+. ..|+.+...++....|++||||||+..++..+.. ...+++++|+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred cccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3466778999999999999999999999764 4777777777777789999999999988876654 6799999999
Q ss_pred hHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHHHHHhcCCCHHHHHHHHhhhhccccc---cCCCcc
Q 003773 175 EEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLLRSKRTVSEWQRILDSEMWKVEE---IGKGLL 251 (796)
Q Consensus 175 ~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w~~~l~~~~~~~~~---~~~~~~ 251 (796)
.+||++||++.++... ....+...+.+++|++.|+|+||||+++|++|+.+.+..+|.++++.......+ ....+.
T Consensus 159 ~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~ 237 (287)
T PF00931_consen 159 EEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVF 237 (287)
T ss_dssp HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHH
T ss_pred cccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999986544 223345577899999999999999999999997766778999998875555432 245688
Q ss_pred chhhhhccCCCChhhhhhHHhhhcCCCCCceecHHHHHHHHHHcCCcCCCC
Q 003773 252 PPLLLSYNDLPSSSMVKRCFSYCSVFPKDYNIRKEELITLWMAQCYLNSEE 302 (796)
Q Consensus 252 ~~l~~s~~~L~~~~~~k~~fl~~~~fp~~~~i~~~~Li~~wia~g~i~~~~ 302 (796)
..+.+||+.||+ ++|.||+|||+||+++.|+++.++.+|+++||+...+
T Consensus 238 ~~l~~s~~~L~~--~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 238 SALELSYDSLPD--ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSKH 286 (287)
T ss_dssp HHHHHHHHSSHT--CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred ccceechhcCCc--cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcccC
Confidence 899999999999 9999999999999999999999999999999997653
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=2.9e-25 Score=267.94 Aligned_cols=369 Identities=21% Similarity=0.253 Sum_probs=185.3
Q ss_pred CceEEEEEeecCCCCCCCCCCCCCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccC-------------
Q 003773 373 EKVRHLGLNFEGGASFPMSTPEFNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVP------------- 439 (796)
Q Consensus 373 ~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------------- 439 (796)
..++.+.+..+.... .....+..++.|+.++++ .+.+.+.++..++.++++|++|+|+++.+.
T Consensus 69 ~~v~~L~L~~~~i~~--~~~~~~~~l~~L~~L~Ls--~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~ 144 (968)
T PLN00113 69 SRVVSIDLSGKNISG--KISSAIFRLPYIQTINLS--NNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLET 144 (968)
T ss_pred CcEEEEEecCCCccc--cCChHHhCCCCCCEEECC--CCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCE
Confidence 356677776655432 122345555556666665 233344566666667777777777752210
Q ss_pred --CCcccccccccccccCccccceEecCCCCcc-ccchhhhccCCccEeeccccccccccchhhccccCCCeeecCCccc
Q 003773 440 --LDDQNFIREIPENIGKLIHLKYLNLSELCIE-RLPETLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTEK 516 (796)
Q Consensus 440 --~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~ 516 (796)
++.+.....+|..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|..
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 1111122234444555555555555555543 4455555555555555555544444555555555555555555544
Q ss_pred cccCcccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhccccccccccceEEEecc
Q 003773 517 LKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLHLEFGR 596 (796)
Q Consensus 517 ~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 596 (796)
...+|..++++++|++|++ ..+...+..+..+..++ +|+.+.+... .+.......+.++++|+.|++++|.
T Consensus 225 ~~~~p~~l~~l~~L~~L~L--~~n~l~~~~p~~l~~l~---~L~~L~L~~n----~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDL--VYNNLTGPIPSSLGNLK---NLQYLFLYQN----KLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred CCcCChhHhcCCCCCEEEC--cCceeccccChhHhCCC---CCCEEECcCC----eeeccCchhHhhccCcCEEECcCCe
Confidence 4445555555555555542 22222222222222222 2222222221 1111111234445566666666554
Q ss_pred ccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCC-CCCchhhhccCCcEEEEcCCCCCCCCCc-cccc-cccce
Q 003773 597 VVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGN-IFPKWLTLLTNLRELKLFSCVNCEHLPP-LGKL-LLEKL 673 (796)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~L~~~~~~~~lp~-l~~l-~L~~L 673 (796)
+.+ .++..+..+++|+.|++.+|... .+|.++..+++|+.|++++|...+.+|. ++.+ +|+.|
T Consensus 296 l~~--------------~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 361 (968)
T PLN00113 296 LSG--------------EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVL 361 (968)
T ss_pred ecc--------------CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEE
Confidence 321 23344556677888888777654 4577777788888888888876666666 6666 78888
Q ss_pred eccccccceEeCccccCCCCCC---ccCCC----CCCcccCCCccceeeccccccccccccccccccccCCCCccceeec
Q 003773 674 TLYNLISVKRVGDEFLGIEESS---VDDTS----SSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEI 746 (796)
Q Consensus 674 ~l~~~~~l~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l 746 (796)
++++|.....++..+.....+. +..+. ....++.+++|+.|++.+| .+.+..|..+..+++|+.|++
T Consensus 362 ~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n------~l~~~~p~~~~~l~~L~~L~L 435 (968)
T PLN00113 362 DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN------SFSGELPSEFTKLPLVYFLDI 435 (968)
T ss_pred ECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCC------EeeeECChhHhcCCCCCEEEC
Confidence 8877765444444333222211 11111 1122345677777766554 222223444445555555555
Q ss_pred cCCCCCCCCCcCCCCCCCccEEEEcCCC
Q 003773 747 DCCSKLNVLPDHLLQTTTLQELSIRGCP 774 (796)
Q Consensus 747 ~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 774 (796)
++|.....+|..+..+++|+.|++++|.
T Consensus 436 s~N~l~~~~~~~~~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 436 SNNNLQGRINSRKWDMPSLQMLSLARNK 463 (968)
T ss_pred cCCcccCccChhhccCCCCcEEECcCce
Confidence 5554444444434444445555554444
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=8.1e-25 Score=264.12 Aligned_cols=343 Identities=18% Similarity=0.205 Sum_probs=151.1
Q ss_pred hhcCcccceeeecccccCCCcccccccccccccCccccceEecCCCCcc-ccchhhhccCCccEeeccccccccccchhh
Q 003773 422 FSKVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIE-RLPETLCELYNLQKLAVRWCTNLRELPAGI 500 (796)
Q Consensus 422 ~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 500 (796)
+.++++|++|++++ +.....+|..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|..+
T Consensus 184 ~~~l~~L~~L~L~~-------n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 256 (968)
T PLN00113 184 LTNLTSLEFLTLAS-------NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL 256 (968)
T ss_pred hhhCcCCCeeeccC-------CCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH
Confidence 44455555555553 2222334445555555555555555543 444455555555555555544334445455
Q ss_pred ccccCCCeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhcc
Q 003773 501 GKLMNMRSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQ 580 (796)
Q Consensus 501 ~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~ 580 (796)
+++++|++|++++|.....+|..++++++|+.|++ ..+...+..+..+..+ ++|+.+.+.+.. ........
T Consensus 257 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L--s~n~l~~~~p~~~~~l---~~L~~L~l~~n~----~~~~~~~~ 327 (968)
T PLN00113 257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDL--SDNSLSGEIPELVIQL---QNLEILHLFSNN----FTGKIPVA 327 (968)
T ss_pred hCCCCCCEEECcCCeeeccCchhHhhccCcCEEEC--cCCeeccCCChhHcCC---CCCcEEECCCCc----cCCcCChh
Confidence 55555555555555433344444444555554442 2222222222222222 222222222111 11111122
Q ss_pred ccccccccceEEEeccccCCCCCcCc----------cCchhHHHHHhhCCCCCCCcEEEEeecCCC-CCCchhhhccCCc
Q 003773 581 LYNKKNLLRLHLEFGRVVDGEGEEGR----------RKNEKDKQLLEALQPPLNVEELWILFYGGN-IFPKWLTLLTNLR 649 (796)
Q Consensus 581 l~~~~~L~~L~l~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~l~~L~ 649 (796)
+..+++|+.|++..|.+.+....... ........++..+...++|+.|++.+|... .+|.++..+++|+
T Consensus 328 ~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~ 407 (968)
T PLN00113 328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLR 407 (968)
T ss_pred HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCC
Confidence 33444455555544443211000000 000000011223334455566666555543 3455666666666
Q ss_pred EEEEcCCCCCCCCCc-cccc-cccceeccccccceEeCccccCCCCCCccCCCCCC------cccCCCccceeeccccc-
Q 003773 650 ELKLFSCVNCEHLPP-LGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSS------SVIAFPKLKSLKIEDLD- 720 (796)
Q Consensus 650 ~L~L~~~~~~~~lp~-l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~L~~L~l~~~~- 720 (796)
.|++++|...+.+|. +..+ .|+.|++++|.....++..+..+..+...+...+. .....++|+.|++++|.
T Consensus 408 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l 487 (968)
T PLN00113 408 RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQF 487 (968)
T ss_pred EEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCcc
Confidence 666666655555554 5555 66666666655433333222222111111111110 00112334444443331
Q ss_pred -----------------cccccccccccccccCCCCccceeeccCCCCCCCCCcCCCCCCCccEEEEcCCCchhhcc
Q 003773 721 -----------------ELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLPDHLLQTTTLQELSIRGCPILEERY 780 (796)
Q Consensus 721 -----------------~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~ 780 (796)
+|..+.+.+..|..+..+++|++|+|++|.....+|..+..+++|+.|++++|+.....+
T Consensus 488 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 564 (968)
T PLN00113 488 SGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564 (968)
T ss_pred CCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCC
Confidence 111122333445566666777777777776666666666667777777777776544433
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=6.4e-25 Score=224.37 Aligned_cols=301 Identities=23% Similarity=0.254 Sum_probs=231.9
Q ss_pred hhcCcccceeeecccccCCCcccccc--cccccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchh
Q 003773 422 FSKVACLRALVIRQWFVPLDDQNFIR--EIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAG 499 (796)
Q Consensus 422 ~~~~~~L~~L~l~~~~~~~~~~~~~~--~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~ 499 (796)
++.++.||.+++.. |.+. -+|..|..|..|..||||+|++++.|..+.+.+++-+|+|++|. +..+|..
T Consensus 74 Ls~Lp~LRsv~~R~--------N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~ 144 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRD--------NNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNS 144 (1255)
T ss_pred hccchhhHHHhhhc--------cccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCch
Confidence 56677888888874 3332 46888888999999999999999999888888999999999866 7888864
Q ss_pred -hccccCCCeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhh
Q 003773 500 -IGKLMNMRSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAER 578 (796)
Q Consensus 500 -~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~ 578 (796)
+.+|+.|-+|+|++| .+..+|+.+.+|..||+|.+ ++|-. ...-+..|++++.|..+++++-.. ...-..
T Consensus 145 lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~L--s~NPL---~hfQLrQLPsmtsL~vLhms~TqR---Tl~N~P 215 (1255)
T KOG0444|consen 145 LFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKL--SNNPL---NHFQLRQLPSMTSLSVLHMSNTQR---TLDNIP 215 (1255)
T ss_pred HHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhc--CCChh---hHHHHhcCccchhhhhhhcccccc---hhhcCC
Confidence 568888889999888 78888988888999999873 33321 133566777777777777665321 112233
Q ss_pred ccccccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCC
Q 003773 579 LQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVN 658 (796)
Q Consensus 579 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~ 658 (796)
.++..+.+|..++++.|++ ..+++.+-.+++|+.|++++|.+.++....+...+|++|+++.| .
T Consensus 216 tsld~l~NL~dvDlS~N~L---------------p~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN-Q 279 (1255)
T KOG0444|consen 216 TSLDDLHNLRDVDLSENNL---------------PIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN-Q 279 (1255)
T ss_pred CchhhhhhhhhccccccCC---------------CcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccc-h
Confidence 4577888999999998884 34667777888999999999999988888888899999999999 5
Q ss_pred CCCCCc-cccc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeeccccccccccccccccccccC
Q 003773 659 CEHLPP-LGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENIS 736 (796)
Q Consensus 659 ~~~lp~-l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~ 736 (796)
+..+|. +..| .|++|.+.++. +. |.+ ..+.++.+.+|+.+...++ +|+-. |.+++
T Consensus 280 Lt~LP~avcKL~kL~kLy~n~Nk-L~-----FeG----------iPSGIGKL~~Levf~aanN-~LElV------PEglc 336 (1255)
T KOG0444|consen 280 LTVLPDAVCKLTKLTKLYANNNK-LT-----FEG----------IPSGIGKLIQLEVFHAANN-KLELV------PEGLC 336 (1255)
T ss_pred hccchHHHhhhHHHHHHHhccCc-cc-----ccC----------CccchhhhhhhHHHHhhcc-ccccC------chhhh
Confidence 777887 7888 89998887654 21 111 1223567888999977775 45433 88999
Q ss_pred CCCccceeeccCCCCCCCCCcCCCCCCCccEEEEcCCCchhhcc
Q 003773 737 IMPRLSSLEIDCCSKLNVLPDHLLQTTTLQELSIRGCPILEERY 780 (796)
Q Consensus 737 ~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~ 780 (796)
.|+.|+.|.|+.| .+.++|+.|+-++.|++||++.||.|.=-+
T Consensus 337 RC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 337 RCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 9999999999988 677899999999999999999999876433
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=8.1e-24 Score=216.39 Aligned_cols=338 Identities=20% Similarity=0.225 Sum_probs=248.1
Q ss_pred eEEEEEeecCCC--CCCCCCCCCCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCccccccccccc
Q 003773 375 VRHLGLNFEGGA--SFPMSTPEFNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREIPEN 452 (796)
Q Consensus 375 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~ 452 (796)
+|.+.+..+... .+|.....+.+++.|+.-.-. ...+| +-++.+.+|..|.+. +|.+..+...
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~------L~~vP-eEL~~lqkLEHLs~~--------HN~L~~vhGE 73 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK------LEQVP-EELSRLQKLEHLSMA--------HNQLISVHGE 73 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhh------hhhCh-HHHHHHhhhhhhhhh--------hhhhHhhhhh
Confidence 455555555433 245555556666666654322 23333 347889999999999 7777778888
Q ss_pred ccCccccceEecCCCCcc--ccchhhhccCCccEeeccccccccccchhhccccCCCeeecCCccccccCccc-CCCCCC
Q 003773 453 IGKLIHLKYLNLSELCIE--RLPETLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTEKLKYLPIG-ISRLTS 529 (796)
Q Consensus 453 ~~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~ 529 (796)
++.|+.||.+.++.|++. .+|..|..|..|.+|||+.|. +.+.|.++...+++-.|+|++| .+..+|.. +.+|+.
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtD 151 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTD 151 (1255)
T ss_pred hccchhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHh
Confidence 889999999999999976 789999999999999999976 8999999999999999999999 67778865 467888
Q ss_pred cccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhccccccccccceEEEeccccCCCCCcCccCc
Q 003773 530 LRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRKN 609 (796)
Q Consensus 530 L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 609 (796)
|-.|++ +.|.. ...+.-+..|.+|+ .+.+.+ +.+.....-.+..+.+|..|++++.+
T Consensus 152 LLfLDL--S~NrL-e~LPPQ~RRL~~Lq---tL~Ls~----NPL~hfQLrQLPsmtsL~vLhms~Tq------------- 208 (1255)
T KOG0444|consen 152 LLFLDL--SNNRL-EMLPPQIRRLSMLQ---TLKLSN----NPLNHFQLRQLPSMTSLSVLHMSNTQ------------- 208 (1255)
T ss_pred Hhhhcc--ccchh-hhcCHHHHHHhhhh---hhhcCC----ChhhHHHHhcCccchhhhhhhccccc-------------
Confidence 877773 33322 22233333344444 333333 22223333345566777777777654
Q ss_pred hhHHHHHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCCCCCc-cccc-cccceeccccccceEeCcc
Q 003773 610 EKDKQLLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCEHLPP-LGKL-LLEKLTLYNLISVKRVGDE 687 (796)
Q Consensus 610 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~-l~~l-~L~~L~l~~~~~l~~~~~~ 687 (796)
.+...++.++..+.+|..++++.|....+|..+-.+++|+.|+|++|. ++.+.. .+.. +|+.|+++.++ +..+|..
T Consensus 209 RTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~a 286 (1255)
T KOG0444|consen 209 RTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQ-LTVLPDA 286 (1255)
T ss_pred chhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccch-hccchHH
Confidence 335566677777889999999999999999999999999999999995 444444 4555 89999999876 3344433
Q ss_pred ccCCCCCCccCCCCCCcccCCCccceeeccccccccccccccccccccCCCCccceeeccCCCCCCCCCcCCCCCCCccE
Q 003773 688 FLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLPDHLLQTTTLQE 767 (796)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 767 (796)
. -.+++|+.|.+.++ +|..-.+ |.+++.+.+|+.+..++| +++-+|+++..|..|+.
T Consensus 287 v-----------------cKL~kL~kLy~n~N-kL~FeGi----PSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~k 343 (1255)
T KOG0444|consen 287 V-----------------CKLTKLTKLYANNN-KLTFEGI----PSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQK 343 (1255)
T ss_pred H-----------------hhhHHHHHHHhccC-cccccCC----ccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHH
Confidence 2 26788999977765 5655444 999999999999999998 89999999999999999
Q ss_pred EEEcCCCchh
Q 003773 768 LSIRGCPILE 777 (796)
Q Consensus 768 L~l~~~~~l~ 777 (796)
|.++.|..++
T Consensus 344 L~L~~NrLiT 353 (1255)
T KOG0444|consen 344 LKLDHNRLIT 353 (1255)
T ss_pred hcccccceee
Confidence 9999988655
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=2.3e-22 Score=204.66 Aligned_cols=211 Identities=21% Similarity=0.255 Sum_probs=102.1
Q ss_pred ccccccc-cccccCccccceEecCCCCccccch-hhhccCCccEeecccccccccc-chhhccccCCCeeecCCcccccc
Q 003773 443 QNFIREI-PENIGKLIHLKYLNLSELCIERLPE-TLCELYNLQKLAVRWCTNLREL-PAGIGKLMNMRSLMNGQTEKLKY 519 (796)
Q Consensus 443 ~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~ 519 (796)
+|.+..+ .+++..++.||.||||.|.|.++|. ++..=.++++|+|++|. +..+ ...|..+.+|-.|.|+.| .++.
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrN-ritt 211 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRN-RITT 211 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccC-cccc
Confidence 4444444 2334445555555555555555543 23344555555555554 2222 234555555556666555 3444
Q ss_pred Ccc-cCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhccccccccccceEEEecccc
Q 003773 520 LPI-GISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLHLEFGRVV 598 (796)
Q Consensus 520 ~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 598 (796)
+|. .|.+|++|+.|++ ..|...-.....+..|++|++|+. .. +.+..+....+..|.+++.|+++.|++.
T Consensus 212 Lp~r~Fk~L~~L~~LdL--nrN~irive~ltFqgL~Sl~nlkl---qr----N~I~kL~DG~Fy~l~kme~l~L~~N~l~ 282 (873)
T KOG4194|consen 212 LPQRSFKRLPKLESLDL--NRNRIRIVEGLTFQGLPSLQNLKL---QR----NDISKLDDGAFYGLEKMEHLNLETNRLQ 282 (873)
T ss_pred cCHHHhhhcchhhhhhc--cccceeeehhhhhcCchhhhhhhh---hh----cCcccccCcceeeecccceeecccchhh
Confidence 443 3444666666552 222221111223333444433332 11 2222333344556666666666666542
Q ss_pred CCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCC-CchhhhccCCcEEEEcCCCCCCCCCc--cccc-ccccee
Q 003773 599 DGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIF-PKWLTLLTNLRELKLFSCVNCEHLPP--LGKL-LLEKLT 674 (796)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~lp~--l~~l-~L~~L~ 674 (796)
. .--.++..+..|+.|++++|.+..+ ++.+...++|++|+|++|. +..++. +..| .|+.|.
T Consensus 283 ~--------------vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~Ln 347 (873)
T KOG4194|consen 283 A--------------VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELN 347 (873)
T ss_pred h--------------hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc-cccCChhHHHHHHHhhhhc
Confidence 1 1112445556666666666666554 4444556666666666663 344443 4555 566666
Q ss_pred ccccc
Q 003773 675 LYNLI 679 (796)
Q Consensus 675 l~~~~ 679 (796)
|+++.
T Consensus 348 Ls~Ns 352 (873)
T KOG4194|consen 348 LSHNS 352 (873)
T ss_pred ccccc
Confidence 66543
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=4.7e-22 Score=193.59 Aligned_cols=357 Identities=20% Similarity=0.227 Sum_probs=217.9
Q ss_pred eEEEEEeecCCCCCCCCCCCCCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCccccccccccccc
Q 003773 375 VRHLGLNFEGGASFPMSTPEFNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREIPENIG 454 (796)
Q Consensus 375 ~~~l~l~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~ 454 (796)
+..+.++.+.....+..+.....+..|.+... ....+|.. ......|+.|+.+ .+...++|++++
T Consensus 70 l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n------~ls~lp~~-i~s~~~l~~l~~s--------~n~~~el~~~i~ 134 (565)
T KOG0472|consen 70 LTVLNVHDNKLSQLPAAIGELEALKSLNVSHN------KLSELPEQ-IGSLISLVKLDCS--------SNELKELPDSIG 134 (565)
T ss_pred eeEEEeccchhhhCCHHHHHHHHHHHhhcccc------hHhhccHH-Hhhhhhhhhhhcc--------ccceeecCchHH
Confidence 44555555555544544444444444443332 22333333 5566777777777 667777777788
Q ss_pred CccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhccccCCCeeecCCccccccCcccCCCCCCcccCC
Q 003773 455 KLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTEKLKYLPIGISRLTSLRTLE 534 (796)
Q Consensus 455 ~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 534 (796)
.+..|..|+..+|++.++|.+++++.+|..|++.+|. +..+|+..-.|+.|++|+...| .++.+|+.+|.|.+|..|.
T Consensus 135 ~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~Ly 212 (565)
T KOG0472|consen 135 RLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLY 212 (565)
T ss_pred HHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHH
Confidence 8888888888888888888888888888888888765 6666666666888888887777 6777888888888777775
Q ss_pred CeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhccccccccccceEEEeccccCCCCCcCccCchhHHH
Q 003773 535 KFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQ 614 (796)
Q Consensus 535 ~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 614 (796)
+ ..+.. ...+ .+..+..|..+. +. .+.+..+.......++++..|++..|.+ ..
T Consensus 213 L--~~Nki-~~lP-ef~gcs~L~Elh---~g----~N~i~~lpae~~~~L~~l~vLDLRdNkl---------------ke 266 (565)
T KOG0472|consen 213 L--RRNKI-RFLP-EFPGCSLLKELH---VG----ENQIEMLPAEHLKHLNSLLVLDLRDNKL---------------KE 266 (565)
T ss_pred h--hhccc-ccCC-CCCccHHHHHHH---hc----ccHHHhhHHHHhcccccceeeecccccc---------------cc
Confidence 2 22221 1112 233333333222 11 1334444445566777888888887763 44
Q ss_pred HHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCC----------------------------------
Q 003773 615 LLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCE---------------------------------- 660 (796)
Q Consensus 615 ~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~---------------------------------- 660 (796)
+++.+..+.+|++|++++|.+..+|..++++ +|+.|.+.+|+.-+
T Consensus 267 ~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e 345 (565)
T KOG0472|consen 267 VPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE 345 (565)
T ss_pred CchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc
Confidence 5566666778888888888888888888888 88888888874100
Q ss_pred ---C-----CCccccc-cccceeccccccceEeCccccCCCC------CCccCC--------------------------
Q 003773 661 ---H-----LPPLGKL-LLEKLTLYNLISVKRVGDEFLGIEE------SSVDDT-------------------------- 699 (796)
Q Consensus 661 ---~-----lp~l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~------~~~~~~-------------------------- 699 (796)
+ +|....+ +.+.|++++-+ +..+|++.+.... .+....
T Consensus 346 ~~~t~~~~~~~~~~~~i~tkiL~~s~~q-lt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~i 424 (565)
T KOG0472|consen 346 TAMTLPSESFPDIYAIITTKILDVSDKQ-LTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKI 424 (565)
T ss_pred ccCCCCCCcccchhhhhhhhhhcccccc-cccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCcc
Confidence 0 1111122 45555555422 2333332221111 000000
Q ss_pred CCC-CcccCCCccceeeccccc-----------------cccccc-----------------------cccccccccCCC
Q 003773 700 SSS-SSVIAFPKLKSLKIEDLD-----------------ELEEWN-----------------------YRVTRKENISIM 738 (796)
Q Consensus 700 ~~~-~~~~~~~~L~~L~l~~~~-----------------~L~~~~-----------------------~~~~~~~~~~~l 738 (796)
+.. ..+..+++|..|+++++. +++.+. +....+.++.+|
T Consensus 425 sfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm 504 (565)
T KOG0472|consen 425 SFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNM 504 (565)
T ss_pred ccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhh
Confidence 000 112344555566555542 222222 233345568899
Q ss_pred CccceeeccCCCCCCCCCcCCCCCCCccEEEEcCCCchh
Q 003773 739 PRLSSLEIDCCSKLNVLPDHLLQTTTLQELSIRGCPILE 777 (796)
Q Consensus 739 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~ 777 (796)
.+|..|++.+| -+..+|..++++++|++|++.|||.=.
T Consensus 505 ~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 505 RNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred hhcceeccCCC-chhhCChhhccccceeEEEecCCccCC
Confidence 99999999998 688899999999999999999999643
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.80 E-value=6.2e-19 Score=212.67 Aligned_cols=280 Identities=23% Similarity=0.257 Sum_probs=170.1
Q ss_pred CcccceeeecccccCCCcccccccccccccCccccceEecCCCC-ccccchhhhccCCccEeeccccccccccchhhccc
Q 003773 425 VACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELC-IERLPETLCELYNLQKLAVRWCTNLRELPAGIGKL 503 (796)
Q Consensus 425 ~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l 503 (796)
+.+|+.|++. ++.+..+|..+..+++|++|+|+++. +..+|. ++.+++|++|+|++|..+..+|..++++
T Consensus 610 ~~~L~~L~L~--------~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L 680 (1153)
T PLN03210 610 PENLVKLQMQ--------GSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYL 680 (1153)
T ss_pred ccCCcEEECc--------CccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhcc
Confidence 4566666666 44555566666666666666666554 455553 5566666666666666666666666666
Q ss_pred cCCCeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCccc-------------ccccc---cCCCCCcceecCC
Q 003773 504 MNMRSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCR-------------LESLK---NLQLLRECRVEGL 567 (796)
Q Consensus 504 ~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~-------------l~~l~---~L~~L~~l~l~~l 567 (796)
++|+.|++++|..++.+|..+ ++++|+.|++..+ ......+.. +..++ .+.+|..+.+..+
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc--~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~ 757 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGC--SRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEM 757 (1153)
T ss_pred CCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCC--CCccccccccCCcCeeecCCCcccccccccccccccccccccc
Confidence 666666666666666666554 4555555543211 110000000 00000 1122222222211
Q ss_pred CCC---CChhhhhhccccccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecC-CCCCCchhh
Q 003773 568 SNV---SHVDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYG-GNIFPKWLT 643 (796)
Q Consensus 568 ~~~---~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~p~~~~ 643 (796)
... .............+++|+.|+++.|.. ...++..+..+++|+.|++++|. ...+|..+
T Consensus 758 ~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~--------------l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~- 822 (1153)
T PLN03210 758 KSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS--------------LVELPSSIQNLHKLEHLEIENCINLETLPTGI- 822 (1153)
T ss_pred chhhccccccccchhhhhccccchheeCCCCCC--------------ccccChhhhCCCCCCEEECCCCCCcCeeCCCC-
Confidence 100 000011111122346788888876642 12345567788999999999875 56677766
Q ss_pred hccCCcEEEEcCCCCCCCCCccccccccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeecccccccc
Q 003773 644 LLTNLRELKLFSCVNCEHLPPLGKLLLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELE 723 (796)
Q Consensus 644 ~l~~L~~L~L~~~~~~~~lp~l~~l~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 723 (796)
.+++|++|+|++|..+..+|.+.. +|+.|+++++. ++.++.. +..+++|+.|++.+|.+|+
T Consensus 823 ~L~sL~~L~Ls~c~~L~~~p~~~~-nL~~L~Ls~n~-i~~iP~s-----------------i~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 823 NLESLESLDLSGCSRLRTFPDIST-NISDLNLSRTG-IEEVPWW-----------------IEKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred CccccCEEECCCCCcccccccccc-ccCEeECCCCC-CccChHH-----------------HhcCCCCCEEECCCCCCcC
Confidence 799999999999998888876422 78999998754 3433322 3478999999999999988
Q ss_pred ccccccccccccCCCCccceeeccCCCCCCCCC
Q 003773 724 EWNYRVTRKENISIMPRLSSLEIDCCSKLNVLP 756 (796)
Q Consensus 724 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 756 (796)
.. |..+..+++|+.|++++|..+..++
T Consensus 884 ~l------~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 884 RV------SLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred cc------CcccccccCCCeeecCCCccccccc
Confidence 75 4456788999999999998887553
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=3.3e-20 Score=189.07 Aligned_cols=340 Identities=21% Similarity=0.279 Sum_probs=242.0
Q ss_pred CceEEEEEeecCCCCCCCCCCCCCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCcccccccccc-
Q 003773 373 EKVRHLGLNFEGGASFPMSTPEFNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREIPE- 451 (796)
Q Consensus 373 ~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~- 451 (796)
.++..+.+..+.....|.......++..| ++. ++.+..+-.+.+..++.||.|||+ .|.+..+|.
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~~sghl~~L---~L~---~N~I~sv~se~L~~l~alrslDLS--------rN~is~i~~~ 167 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGHESGHLEKL---DLR---HNLISSVTSEELSALPALRSLDLS--------RNLISEIPKP 167 (873)
T ss_pred CcceeeeeccchhhhcccccccccceeEE---eee---ccccccccHHHHHhHhhhhhhhhh--------hchhhcccCC
Confidence 45566666666655444433334444444 443 456666767778889999999999 888888864
Q ss_pred cccCccccceEecCCCCccccch-hhhccCCccEeeccccccccccch-hhccccCCCeeecCCccccccC-cccCCCCC
Q 003773 452 NIGKLIHLKYLNLSELCIERLPE-TLCELYNLQKLAVRWCTNLRELPA-GIGKLMNMRSLMNGQTEKLKYL-PIGISRLT 528 (796)
Q Consensus 452 ~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~-p~~i~~l~ 528 (796)
++..=.++++|+|++|.|+.+-. .|.+|.+|-+|.|++|. +..+|. .|.+|++|+.|+|..| .+... -..|..|.
T Consensus 168 sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~ 245 (873)
T KOG4194|consen 168 SFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLP 245 (873)
T ss_pred CCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCch
Confidence 45556789999999999997754 58889999999999987 777775 6777999999999988 44443 34578889
Q ss_pred CcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhccccccccccceEEEeccccCCCCCcCccC
Q 003773 529 SLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRK 608 (796)
Q Consensus 529 ~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 608 (796)
+|+.|. ...|.........+-.|.++..|. +.. +.+.......+.++..|+.|++++|.+...
T Consensus 246 Sl~nlk--lqrN~I~kL~DG~Fy~l~kme~l~---L~~----N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri-------- 308 (873)
T KOG4194|consen 246 SLQNLK--LQRNDISKLDDGAFYGLEKMEHLN---LET----NRLQAVNEGWLFGLTSLEQLDLSYNAIQRI-------- 308 (873)
T ss_pred hhhhhh--hhhcCcccccCcceeeecccceee---ccc----chhhhhhcccccccchhhhhccchhhhhee--------
Confidence 999887 444444333333333444444333 221 455566667788999999999999986432
Q ss_pred chhHHHHHhhCCCCCCCcEEEEeecCCCCCCc-hhhhccCCcEEEEcCCCCCCCCCc--cccc-cccceeccccccceEe
Q 003773 609 NEKDKQLLEALQPPLNVEELWILFYGGNIFPK-WLTLLTNLRELKLFSCVNCEHLPP--LGKL-LLEKLTLYNLISVKRV 684 (796)
Q Consensus 609 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~L~~~~~~~~lp~--l~~l-~L~~L~l~~~~~l~~~ 684 (796)
-.++....++|+.|++++|.+..+++ .+..++.|+.|.|++|. ++.+.. +..+ +|++|+|+++..--.+
T Consensus 309 ------h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~I 381 (873)
T KOG4194|consen 309 ------HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNELSWCI 381 (873)
T ss_pred ------ecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEE
Confidence 23456778899999999999998865 55589999999999994 444443 5566 8999999987654444
Q ss_pred CccccCCCCCCccCCCCCCcccCCCccceeeccccccccccccccccccccCCCCccceeeccCCCCCCCCCcCCCCCCC
Q 003773 685 GDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLPDHLLQTTT 764 (796)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~ 764 (796)
.+.. ..+.++|+|++|.+.++ +|+.+ ....|..+++|++|+|.+|.....-|..+.++ .
T Consensus 382 EDaa--------------~~f~gl~~LrkL~l~gN-qlk~I-----~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~ 440 (873)
T KOG4194|consen 382 EDAA--------------VAFNGLPSLRKLRLTGN-QLKSI-----PKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-E 440 (873)
T ss_pred ecch--------------hhhccchhhhheeecCc-eeeec-----chhhhccCcccceecCCCCcceeecccccccc-h
Confidence 3321 12457999999988776 55544 35678899999999999997665557777766 8
Q ss_pred ccEEEEcCC
Q 003773 765 LQELSIRGC 773 (796)
Q Consensus 765 L~~L~l~~~ 773 (796)
|++|.+..-
T Consensus 441 Lk~Lv~nSs 449 (873)
T KOG4194|consen 441 LKELVMNSS 449 (873)
T ss_pred hhhhhhccc
Confidence 888865443
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.65 E-value=2.3e-18 Score=185.36 Aligned_cols=59 Identities=31% Similarity=0.350 Sum_probs=43.4
Q ss_pred CCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCC----------------------CCCCCc-cccc-cccceecc
Q 003773 621 PPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVN----------------------CEHLPP-LGKL-LLEKLTLY 676 (796)
Q Consensus 621 ~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~----------------------~~~lp~-l~~l-~L~~L~l~ 676 (796)
.+.+|++++++.+....+|.|++.+.+|+.|+..+|.. ++.+|. ++.+ .|+.|+|.
T Consensus 239 ~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeeh
Confidence 34588888888888888888888888888888877742 233455 4556 78888887
Q ss_pred ccc
Q 003773 677 NLI 679 (796)
Q Consensus 677 ~~~ 679 (796)
.+.
T Consensus 319 ~N~ 321 (1081)
T KOG0618|consen 319 SNN 321 (1081)
T ss_pred hcc
Confidence 654
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.64 E-value=3.8e-18 Score=166.66 Aligned_cols=256 Identities=25% Similarity=0.312 Sum_probs=158.2
Q ss_pred ccccccccccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhccccCCCeeecCCccccccCcc
Q 003773 443 QNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTEKLKYLPI 522 (796)
Q Consensus 443 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~ 522 (796)
+|.+..+.+.+.++..|..|++.+|.+.++|++++.+..++.|+++.|+ +.++|..++.+.+|++|+.+.| .+..+|+
T Consensus 54 ~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~~s~n-~~~el~~ 131 (565)
T KOG0472|consen 54 HNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLVKLDCSSN-ELKELPD 131 (565)
T ss_pred cCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhhhhhcccc-ceeecCc
Confidence 4555555444556666666666666666666666666666666666644 5566666666666666666665 4555666
Q ss_pred cCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhccccccccccceEEEeccccCCCC
Q 003773 523 GISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLHLEFGRVVDGEG 602 (796)
Q Consensus 523 ~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 602 (796)
+++.+..|+.|+. ..+.. ...+..+..+.++..+.. .+ ++....... ..+++.
T Consensus 132 ~i~~~~~l~dl~~--~~N~i-~slp~~~~~~~~l~~l~~---~~----n~l~~l~~~-~i~m~~---------------- 184 (565)
T KOG0472|consen 132 SIGRLLDLEDLDA--TNNQI-SSLPEDMVNLSKLSKLDL---EG----NKLKALPEN-HIAMKR---------------- 184 (565)
T ss_pred hHHHHhhhhhhhc--ccccc-ccCchHHHHHHHHHHhhc---cc----cchhhCCHH-HHHHHH----------------
Confidence 6666666655541 11111 111222222222221111 00 111111111 111333
Q ss_pred CcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCCCCCccccc-cccceeccccccc
Q 003773 603 EEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCEHLPPLGKL-LLEKLTLYNLISV 681 (796)
Q Consensus 603 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~l~~l-~L~~L~l~~~~~l 681 (796)
|++|+...|....+|..++.+.+|..|++..| ++..+|.++.. .|++|++..+. +
T Consensus 185 ----------------------L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~N~-i 240 (565)
T KOG0472|consen 185 ----------------------LKHLDCNSNLLETLPPELGGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGENQ-I 240 (565)
T ss_pred ----------------------HHhcccchhhhhcCChhhcchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcccH-H
Confidence 34444444445667888888888999999888 57778888777 78888887654 4
Q ss_pred eEeCccccCCCCCCccCCCCCCcccCCCccceeeccccccccccccccccccccCCCCccceeeccCCCCCCCCCcCCCC
Q 003773 682 KRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLPDHLLQ 761 (796)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~ 761 (796)
+.++.+. ...+++|..|++.++ +|++. |.++.-+.+|++|++++| -+.++|..+++
T Consensus 241 ~~lpae~----------------~~~L~~l~vLDLRdN-klke~------Pde~clLrsL~rLDlSNN-~is~Lp~sLgn 296 (565)
T KOG0472|consen 241 EMLPAEH----------------LKHLNSLLVLDLRDN-KLKEV------PDEICLLRSLERLDLSNN-DISSLPYSLGN 296 (565)
T ss_pred HhhHHHH----------------hcccccceeeecccc-ccccC------chHHHHhhhhhhhcccCC-ccccCCccccc
Confidence 5554432 237889999987776 56655 778888999999999998 67889999999
Q ss_pred CCCccEEEEcCCCch
Q 003773 762 TTTLQELSIRGCPIL 776 (796)
Q Consensus 762 l~~L~~L~l~~~~~l 776 (796)
+ .|+.|-+.|||.=
T Consensus 297 l-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLR 310 (565)
T ss_pred c-eeeehhhcCCchH
Confidence 9 9999999999963
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.60 E-value=1.6e-17 Score=179.10 Aligned_cols=83 Identities=29% Similarity=0.496 Sum_probs=43.7
Q ss_pred hhcCcccceeeecccccCCCcccccccccccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhc
Q 003773 422 FSKVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIG 501 (796)
Q Consensus 422 ~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~ 501 (796)
+..+.+|+.|+++ .|.+...|.+++++.+|++|+|.+|.+..+|.++..+.+|++|++++|. ...+|..+.
T Consensus 64 it~l~~L~~ln~s--------~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~i~ 134 (1081)
T KOG0618|consen 64 ITLLSHLRQLNLS--------RNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLVIE 134 (1081)
T ss_pred hhhHHHHhhcccc--------hhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc-cCCCchhHH
Confidence 3445555555555 5555555555555555555555555555555555555555555555544 344444443
Q ss_pred cccCCCeeecCC
Q 003773 502 KLMNMRSLMNGQ 513 (796)
Q Consensus 502 ~l~~L~~L~l~~ 513 (796)
.++.+..+..++
T Consensus 135 ~lt~~~~~~~s~ 146 (1081)
T KOG0618|consen 135 VLTAEEELAASN 146 (1081)
T ss_pred hhhHHHHHhhhc
Confidence 333333333333
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.53 E-value=3.7e-14 Score=158.55 Aligned_cols=257 Identities=19% Similarity=0.194 Sum_probs=161.2
Q ss_pred ccceeeecccccCCCcccccccccccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhccccCC
Q 003773 427 CLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGKLMNM 506 (796)
Q Consensus 427 ~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 506 (796)
.-..|+++ .+.+..+|..+. .+|+.|++++|+++.+|.. +++|++|++++|. +..+|.. .++|
T Consensus 202 ~~~~LdLs--------~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p~sL 264 (788)
T PRK15387 202 GNAVLNVG--------ESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---PPGL 264 (788)
T ss_pred CCcEEEcC--------CCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc---cccc
Confidence 45567887 566677887665 4788888888888888753 5788888888875 6677753 4678
Q ss_pred CeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhcccccccc
Q 003773 507 RSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKN 586 (796)
Q Consensus 507 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~~ 586 (796)
+.|++++| .+..+|... ++|+.|+ ..+|... ..+.. +.+|+.+.+.+. .+..+.. ...+
T Consensus 265 ~~L~Ls~N-~L~~Lp~lp---~~L~~L~--Ls~N~Lt-~LP~~------p~~L~~LdLS~N----~L~~Lp~----lp~~ 323 (788)
T PRK15387 265 LELSIFSN-PLTHLPALP---SGLCKLW--IFGNQLT-SLPVL------PPGLQELSVSDN----QLASLPA----LPSE 323 (788)
T ss_pred ceeeccCC-chhhhhhch---hhcCEEE--CcCCccc-ccccc------ccccceeECCCC----ccccCCC----Cccc
Confidence 88888887 456666533 3455554 2222221 11111 123333333321 1111110 1134
Q ss_pred ccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCCCCCccc
Q 003773 587 LLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCEHLPPLG 666 (796)
Q Consensus 587 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~l~ 666 (796)
|+.|.+..|.+.. ++. .+.+|+.|++++|.+..+|.. .++|+.|++++|. +..+|.+.
T Consensus 324 L~~L~Ls~N~L~~---------------LP~---lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~-L~~LP~l~ 381 (788)
T PRK15387 324 LCKLWAYNNQLTS---------------LPT---LPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNR-LTSLPALP 381 (788)
T ss_pred ccccccccCcccc---------------ccc---cccccceEecCCCccCCCCCC---Ccccceehhhccc-cccCcccc
Confidence 6667777666421 110 124788899988888887764 4678888888884 45566532
Q ss_pred cccccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeeccccccccccccccccccccCCCCccceeec
Q 003773 667 KLLLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEI 746 (796)
Q Consensus 667 ~l~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l 746 (796)
. +|+.|++++|. +..++ ...++|+.|+++++ .|+.+ |. .+.+|+.|++
T Consensus 382 ~-~L~~LdLs~N~-Lt~LP--------------------~l~s~L~~LdLS~N-~LssI------P~---l~~~L~~L~L 429 (788)
T PRK15387 382 S-GLKELIVSGNR-LTSLP--------------------VLPSELKELMVSGN-RLTSL------PM---LPSGLLSLSV 429 (788)
T ss_pred c-ccceEEecCCc-ccCCC--------------------CcccCCCEEEccCC-cCCCC------Cc---chhhhhhhhh
Confidence 1 68888887754 22222 13457899988876 45433 32 2357889999
Q ss_pred cCCCCCCCCCcCCCCCCCccEEEEcCCCch
Q 003773 747 DCCSKLNVLPDHLLQTTTLQELSIRGCPIL 776 (796)
Q Consensus 747 ~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l 776 (796)
++| .++.+|..+..+++|+.|++++|+.-
T Consensus 430 s~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 430 YRN-QLTRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred ccC-cccccChHHhhccCCCeEECCCCCCC
Confidence 998 57789998889999999999999853
No 16
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.41 E-value=2.2e-11 Score=146.91 Aligned_cols=301 Identities=13% Similarity=0.145 Sum_probs=186.1
Q ss_pred hhccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCC-cCCHHHHH
Q 003773 7 EWTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSD-AFEEIRIA 85 (796)
Q Consensus 7 ~~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~ 85 (796)
|...|..+..+|-|++-.+.+-+. ...+++.|+|++|.||||++..+.+. ++.++|+++.. +.+...+.
T Consensus 6 k~~~p~~~~~~~~R~rl~~~l~~~----~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~ 75 (903)
T PRK04841 6 KLSRPVRLHNTVVRERLLAKLSGA----NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFA 75 (903)
T ss_pred ccCCCCCccccCcchHHHHHHhcc----cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHH
Confidence 444566788899999888877532 45689999999999999999988753 12599999864 45666677
Q ss_pred HHHHHHhccCCCC-------------CccHHHHHHHHHHHhC--CceEEEEEeCCCCCCccChhhHhh-hccCCCCCcEE
Q 003773 86 KAILEVLDKSASS-------------LGEFQSLMQQTQESIR--GKKFFLVLDDVWDGDFKKWDPFFS-CLKNGHHESKI 149 (796)
Q Consensus 86 ~~i~~~l~~~~~~-------------~~~~~~~~~~~~~~l~--~~~~LlvlDd~~~~~~~~~~~l~~-~~~~~~~gs~i 149 (796)
..++..++..... ..+.......+...+. +.+++|||||+...+......+.. .+....++.++
T Consensus 76 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~l 155 (903)
T PRK04841 76 SYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTL 155 (903)
T ss_pred HHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEE
Confidence 7777776422111 0122223333333332 679999999996644333333333 34444566789
Q ss_pred EEEecchhhhh--cc-CccceEEcc----CCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHHHH
Q 003773 150 LITTRDRSVAL--QM-GSIDIISVK----ELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNL 222 (796)
Q Consensus 150 iiTsr~~~~~~--~~-~~~~~~~l~----~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~ 222 (796)
|||||...... .. ......++. +|+.+|+.++|...... . -..+.+.++.+.|+|+|+++..++..
T Consensus 156 v~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~--~-----~~~~~~~~l~~~t~Gwp~~l~l~~~~ 228 (903)
T PRK04841 156 VVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS--P-----IEAAESSRLCDDVEGWATALQLIALS 228 (903)
T ss_pred EEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC--C-----CCHHHHHHHHHHhCChHHHHHHHHHH
Confidence 89999732111 11 112244555 99999999999765421 1 12455788999999999999999987
Q ss_pred HhcCCCHHHHHHHHhhhhccccc-cCCCccchhhh-hccCCCChhhhhhHHhhhcCCCCCceecHHHHHHHHHHcCCcCC
Q 003773 223 LRSKRTVSEWQRILDSEMWKVEE-IGKGLLPPLLL-SYNDLPSSSMVKRCFSYCSVFPKDYNIRKEELITLWMAQCYLNS 300 (796)
Q Consensus 223 l~~~~~~~~w~~~l~~~~~~~~~-~~~~~~~~l~~-s~~~L~~~~~~k~~fl~~~~fp~~~~i~~~~Li~~wia~g~i~~ 300 (796)
+........ ... +.+.. ....+...+.- .++.||+ ..+..+...|+++. +..+ + +..+...
T Consensus 229 ~~~~~~~~~--~~~----~~~~~~~~~~~~~~l~~~v~~~l~~--~~~~~l~~~a~~~~---~~~~-l-----~~~l~~~ 291 (903)
T PRK04841 229 ARQNNSSLH--DSA----RRLAGINASHLSDYLVEEVLDNVDL--ETRHFLLRCSVLRS---MNDA-L-----IVRVTGE 291 (903)
T ss_pred HhhCCCchh--hhh----HhhcCCCchhHHHHHHHHHHhcCCH--HHHHHHHHhccccc---CCHH-H-----HHHHcCC
Confidence 755422100 001 01111 11223443333 4789998 89999999999862 2222 2 2222211
Q ss_pred CCChhHHHHHHHHHHHHHhccccccccccCCCCeeeEEecHHHHHHHHHhh
Q 003773 301 EEDEEMEIIGEEYFNILATRSFFQEFVKDYDDNVMSCKMHDIVHDFAQLVS 351 (796)
Q Consensus 301 ~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~h~lv~~~~~~i~ 351 (796)
..+...+..+.+.+++.... ++....|+.|++++++.....
T Consensus 292 -------~~~~~~L~~l~~~~l~~~~~---~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 -------ENGQMRLEELERQGLFIQRM---DDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred -------CcHHHHHHHHHHCCCeeEee---cCCCCEEehhHHHHHHHHHHH
Confidence 12467888999999864321 111234778999999987654
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.39 E-value=6.7e-13 Score=148.59 Aligned_cols=122 Identities=16% Similarity=0.133 Sum_probs=85.3
Q ss_pred ccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCCCCCc
Q 003773 585 KNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCEHLPP 664 (796)
Q Consensus 585 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~ 664 (796)
.+|+.|+++.|.+.... . .+++|+.|.+++|.+..+|.. .++|+.|+|++|. +..+|.
T Consensus 342 ~~Lq~LdLS~N~Ls~LP---------------~---lp~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~-Lt~LP~ 399 (788)
T PRK15387 342 SGLQELSVSDNQLASLP---------------T---LPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNR-LTSLPV 399 (788)
T ss_pred cccceEecCCCccCCCC---------------C---CCcccceehhhccccccCccc---ccccceEEecCCc-ccCCCC
Confidence 36888888888754211 1 135789999999998888864 4689999999995 556765
Q ss_pred cccccccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeeccccccccccccccccccccCCCCcccee
Q 003773 665 LGKLLLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSL 744 (796)
Q Consensus 665 l~~l~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L 744 (796)
... +|+.|+++++. +..++. .+.+|+.|+++++ .++. .|..+..+++|+.|
T Consensus 400 l~s-~L~~LdLS~N~-LssIP~--------------------l~~~L~~L~Ls~N-qLt~------LP~sl~~L~~L~~L 450 (788)
T PRK15387 400 LPS-ELKELMVSGNR-LTSLPM--------------------LPSGLLSLSVYRN-QLTR------LPESLIHLSSETTV 450 (788)
T ss_pred ccc-CCCEEEccCCc-CCCCCc--------------------chhhhhhhhhccC-cccc------cChHHhhccCCCeE
Confidence 321 78999999875 332321 2346778877665 3442 37778899999999
Q ss_pred eccCCCCCCCCCc
Q 003773 745 EIDCCSKLNVLPD 757 (796)
Q Consensus 745 ~l~~c~~l~~lp~ 757 (796)
+|++|+.....|.
T Consensus 451 dLs~N~Ls~~~~~ 463 (788)
T PRK15387 451 NLEGNPLSERTLQ 463 (788)
T ss_pred ECCCCCCCchHHH
Confidence 9999976554443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.39 E-value=3.5e-13 Score=151.96 Aligned_cols=90 Identities=21% Similarity=0.284 Sum_probs=56.2
Q ss_pred ccceeeecccccCCCcccccccccccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhccccCC
Q 003773 427 CLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGKLMNM 506 (796)
Q Consensus 427 ~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 506 (796)
+...|+++ +..+..+|..+. ++|+.|++++|.++.+|..+. .+|++|++++|. +..+|..+. .+|
T Consensus 179 ~~~~L~L~--------~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L 243 (754)
T PRK15370 179 NKTELRLK--------ILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTI 243 (754)
T ss_pred CceEEEeC--------CCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccc
Confidence 45666666 555556665542 467777777777777776554 477777777665 556665443 467
Q ss_pred CeeecCCccccccCcccCCCCCCcccCC
Q 003773 507 RSLMNGQTEKLKYLPIGISRLTSLRTLE 534 (796)
Q Consensus 507 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 534 (796)
+.|++++| .+..+|..+. ++|+.|+
T Consensus 244 ~~L~Ls~N-~L~~LP~~l~--s~L~~L~ 268 (754)
T PRK15370 244 QEMELSIN-RITELPERLP--SALQSLD 268 (754)
T ss_pred cEEECcCC-ccCcCChhHh--CCCCEEE
Confidence 77777777 4556665543 3555554
No 19
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.37 E-value=2.2e-10 Score=123.61 Aligned_cols=313 Identities=13% Similarity=0.054 Sum_probs=175.7
Q ss_pred cccCcccccHHHHHHHhccc---CCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHH
Q 003773 12 RLKLQIEGLDDDNTLALASS---EQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAI 88 (796)
Q Consensus 12 ~~~~~~vGr~~~~~~l~~~~---~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 88 (796)
..|+.|+||++|++.+...+ ..+...+.+.|+|++|+|||++++.++++.......-.++++++....+...++..+
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 36778999999999655443 122344568899999999999999999874333322347778877777888899999
Q ss_pred HHHhccCC-C-CCccHHHHHHHHHHHhC--CceEEEEEeCCCCCC----ccChhhHhhhccCCCCCcE--EEEEecchhh
Q 003773 89 LEVLDKSA-S-SLGEFQSLMQQTQESIR--GKKFFLVLDDVWDGD----FKKWDPFFSCLKNGHHESK--ILITTRDRSV 158 (796)
Q Consensus 89 ~~~l~~~~-~-~~~~~~~~~~~~~~~l~--~~~~LlvlDd~~~~~----~~~~~~l~~~~~~~~~gs~--iiiTsr~~~~ 158 (796)
++++.... + ...+.++....+.+.+. ++..+||+|+++.-. .+.+..+...+.. ..+++ +|.++....+
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTF 185 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcch
Confidence 99987522 1 22345666677776664 456899999996532 1122233222222 12333 6666665433
Q ss_pred hhccC-------ccceEEccCCChHhHHHHHHHHhhCC--CCCCCCcchhHHHHHHHHhcCCCchhHHHHHHHH--h--c
Q 003773 159 ALQMG-------SIDIISVKELGEEECWSLFKQVAFLG--RSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLL--R--S 225 (796)
Q Consensus 159 ~~~~~-------~~~~~~l~~l~~~e~~~lf~~~~~~~--~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l--~--~ 225 (796)
..... ....+.+.+++.++..+++..++... .....+...+.+++......|..+.|+.++-... + .
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 22211 12468899999999999998876321 1111222223333333333455777777664432 1 1
Q ss_pred C---CCHHHHHHHHhhhhccccccCCCccchhhhhccCCCChhhhhhHHhhhcCCCC--CceecHHHHHHH--HHHcCCc
Q 003773 226 K---RTVSEWQRILDSEMWKVEEIGKGLLPPLLLSYNDLPSSSMVKRCFSYCSVFPK--DYNIRKEELITL--WMAQCYL 298 (796)
Q Consensus 226 ~---~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~k~~fl~~~~fp~--~~~i~~~~Li~~--wia~g~i 298 (796)
. -+.+....+.+... .....-.+..||. +.|..+.-++...+ ...+...++... .+++.+-
T Consensus 266 ~~~~I~~~~v~~a~~~~~----------~~~~~~~~~~L~~--~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKSE----------IVHLSEVLRTLPL--HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred CCCCcCHHHHHHHHHHHH----------HHHHHHHHhcCCH--HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 1 13445544444321 1123345778887 55544433332211 134555555433 2332111
Q ss_pred CCCCChhHHHHHHHHHHHHHhcccccccccc--CCCCeeeEEec
Q 003773 299 NSEEDEEMEIIGEEYFNILATRSFFQEFVKD--YDDNVMSCKMH 340 (796)
Q Consensus 299 ~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~--~~~~~~~~~~h 340 (796)
.... .......+++.|.+.+++...... ..|..+.++.+
T Consensus 334 --~~~~-~~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~ 374 (394)
T PRK00411 334 --YEPR-THTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLS 374 (394)
T ss_pred --CCcC-cHHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEec
Confidence 0000 122346699999999999865432 23444444443
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.32 E-value=7.3e-13 Score=151.72 Aligned_cols=307 Identities=26% Similarity=0.316 Sum_probs=188.5
Q ss_pred cCcccceeeecccccCCCcccc--ccccccc-ccCccccceEecCCCC-ccccchhhhccCCccEeeccccccccccchh
Q 003773 424 KVACLRALVIRQWFVPLDDQNF--IREIPEN-IGKLIHLKYLNLSELC-IERLPETLCELYNLQKLAVRWCTNLRELPAG 499 (796)
Q Consensus 424 ~~~~L~~L~l~~~~~~~~~~~~--~~~lp~~-~~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~ 499 (796)
.++.|+.|-+. .+. +..++.. |..++.|++|||++|. +.++|.+|++|.+|++|+++++. +..+|.+
T Consensus 543 ~~~~L~tLll~--------~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~ 613 (889)
T KOG4658|consen 543 ENPKLRTLLLQ--------RNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSG 613 (889)
T ss_pred CCCccceEEEe--------ecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchH
Confidence 34468888887 332 4555443 7779999999999876 88999999999999999999855 8899999
Q ss_pred hccccCCCeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhc
Q 003773 500 IGKLMNMRSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERL 579 (796)
Q Consensus 500 ~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~ 579 (796)
+++|..|.+|++..+..+..+|..+..|++|++|.++.... ......+..+.+|+.|+.+.+..... ... .
T Consensus 614 l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~---~~~~~~l~el~~Le~L~~ls~~~~s~-~~~-----e 684 (889)
T KOG4658|consen 614 LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSAL---SNDKLLLKELENLEHLENLSITISSV-LLL-----E 684 (889)
T ss_pred HHHHHhhheeccccccccccccchhhhcccccEEEeecccc---ccchhhHHhhhcccchhhheeecchh-HhH-----h
Confidence 99999999999999987777777677799999998765541 22244556667777777666543222 000 1
Q ss_pred cccccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCc-hh-----hh-ccCCcEEE
Q 003773 580 QLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPK-WL-----TL-LTNLRELK 652 (796)
Q Consensus 580 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~-----~~-l~~L~~L~ 652 (796)
.+..+.+|.++...-.. ...........+..+.+|++|.+..+.+..... |. .. ++++..+.
T Consensus 685 ~l~~~~~L~~~~~~l~~-----------~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~ 753 (889)
T KOG4658|consen 685 DLLGMTRLRSLLQSLSI-----------EGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVS 753 (889)
T ss_pred hhhhhHHHHHHhHhhhh-----------cccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHH
Confidence 12222223222111100 000122334456677899999999998754321 21 12 66777777
Q ss_pred EcCCCCCCCCCccccc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCcccee-eccccccccccccccc
Q 003773 653 LFSCVNCEHLPPLGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSL-KIEDLDELEEWNYRVT 730 (796)
Q Consensus 653 L~~~~~~~~lp~l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~L~~~~~~~~ 730 (796)
+.+|.....+...... +|+.|.+..|..++.+.........+.. ....|+++..+ .+.+.+.+.....
T Consensus 754 ~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~-------~i~~f~~~~~l~~~~~l~~l~~i~~--- 823 (889)
T KOG4658|consen 754 ILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE-------LILPFNKLEGLRMLCSLGGLPQLYW--- 823 (889)
T ss_pred hhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhccc-------EEecccccccceeeecCCCCceeEe---
Confidence 8888766655443333 8999999998877766543222111100 11234444444 2444333333211
Q ss_pred cccccCCCCccceeeccCCCCCCCCCcCCCCCCCccEEEEcCC-Cchhhc
Q 003773 731 RKENISIMPRLSSLEIDCCSKLNVLPDHLLQTTTLQELSIRGC-PILEER 779 (796)
Q Consensus 731 ~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~-~~l~~~ 779 (796)
.--.++.|+.+.+..|++++.+|. +.++.+.+| +.+...
T Consensus 824 ---~~l~~~~l~~~~ve~~p~l~~~P~-------~~~~~i~~~~~~~~~~ 863 (889)
T KOG4658|consen 824 ---LPLSFLKLEELIVEECPKLGKLPL-------LSTLTIVGCEEKLKEY 863 (889)
T ss_pred ---cccCccchhheehhcCcccccCcc-------ccccceeccccceeec
Confidence 011234577777777777766553 334555665 444443
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.31 E-value=1.1e-12 Score=128.78 Aligned_cols=238 Identities=19% Similarity=0.082 Sum_probs=142.9
Q ss_pred CCCchhhHHHhhhcCcccceeeecccccCCCcccccccc-cccccCccccceEecCC-CCccccch-hhhccCCccEeec
Q 003773 411 PSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREI-PENIGKLIHLKYLNLSE-LCIERLPE-TLCELYNLQKLAV 487 (796)
Q Consensus 411 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~-~~i~~lp~-~i~~l~~L~~L~l 487 (796)
.+.+..+|+.+|+.+++||.|||+ +|.|..| |+.|..+..|-.|-+-+ |+|+.+|+ .|++|..|+.|.+
T Consensus 76 qN~I~~iP~~aF~~l~~LRrLdLS--------~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 76 QNQISSIPPGAFKTLHRLRRLDLS--------KNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cCCcccCChhhccchhhhceeccc--------ccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 356778888899999999999999 7777777 88899998887777766 77999987 5888999999999
Q ss_pred cccccccccchhhccccCCCeeecCCccccccCcc-cCCCCCCcccCCCeeeCCccCCCCcc----------cccccccC
Q 003773 488 RWCTNLRELPAGIGKLMNMRSLMNGQTEKLKYLPI-GISRLTSLRTLEKFVVGGGVDGGSTC----------RLESLKNL 556 (796)
Q Consensus 488 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~----------~l~~l~~L 556 (796)
.-|.........|..|++|..|.+.+| .+..++. .+..+..++++..-......++..++ ..+.....
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 887755555677888999999998888 5666666 56677777776532211111111110 00000000
Q ss_pred C----------CCCc--cee--cCC-----CCCCChhhhhhccccccccccceEEEeccccCCCCCcCccCc--------
Q 003773 557 Q----------LLRE--CRV--EGL-----SNVSHVDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRKN-------- 609 (796)
Q Consensus 557 ~----------~L~~--l~l--~~l-----~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-------- 609 (796)
. .++. ..+ .++ .+...........+..+++|+.|++++|.+...+..-.....
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 0 0000 000 000 000000111222366778888888888876543332111100
Q ss_pred -hhHHHH-HhhCCCCCCCcEEEEeecCCCCC-CchhhhccCCcEEEEcCCC
Q 003773 610 -EKDKQL-LEALQPPLNVEELWILFYGGNIF-PKWLTLLTNLRELKLFSCV 657 (796)
Q Consensus 610 -~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~L~~~~ 657 (796)
...+.+ -..+..+..|+.|++++|.++.+ |..+..+..|.+|+|-.|+
T Consensus 307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred cchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 011111 12355666777888888777654 5566677777777776664
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.30 E-value=3.6e-12 Score=143.82 Aligned_cols=179 Identities=20% Similarity=0.226 Sum_probs=98.6
Q ss_pred cccceeeecccccCCCcccccccccccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhccccC
Q 003773 426 ACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGKLMN 505 (796)
Q Consensus 426 ~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 505 (796)
.+|+.|+++ ++.+..+|..+. .+|+.|++++|.+..+|..+. .+|+.|++++|. +..+|..+. .+
T Consensus 220 ~nL~~L~Ls--------~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~s 284 (754)
T PRK15370 220 GNIKTLYAN--------SNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNK-ISCLPENLP--EE 284 (754)
T ss_pred cCCCEEECC--------CCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCc-cCccccccC--CC
Confidence 367777777 445556665442 357777777777777776553 467777777554 556665443 46
Q ss_pred CCeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhccccccc
Q 003773 506 MRSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKK 585 (796)
Q Consensus 506 L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~ 585 (796)
|++|++++| .++.+|..+. ++|+.|++ ..|... .++. .-.+
T Consensus 285 L~~L~Ls~N-~Lt~LP~~lp--~sL~~L~L--s~N~Lt----------------------------~LP~------~l~~ 325 (754)
T PRK15370 285 LRYLSVYDN-SIRTLPAHLP--SGITHLNV--QSNSLT----------------------------ALPE------TLPP 325 (754)
T ss_pred CcEEECCCC-ccccCcccch--hhHHHHHh--cCCccc----------------------------cCCc------cccc
Confidence 777777776 4555554332 23444432 111110 0000 0113
Q ss_pred cccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCCCCCc-
Q 003773 586 NLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCEHLPP- 664 (796)
Q Consensus 586 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~- 664 (796)
+|+.|.++.|.+.. ++..+ +++|+.|++++|.+..+|..+ .++|+.|+|++|. +..+|.
T Consensus 326 sL~~L~Ls~N~Lt~---------------LP~~l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~-Lt~LP~~ 385 (754)
T PRK15370 326 GLKTLEAGENALTS---------------LPASL--PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNA-LTNLPEN 385 (754)
T ss_pred cceeccccCCcccc---------------CChhh--cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCc-CCCCCHh
Confidence 45566666555321 11111 257777777777777777654 3678888888774 445554
Q ss_pred cccccccceeccccc
Q 003773 665 LGKLLLEKLTLYNLI 679 (796)
Q Consensus 665 l~~l~L~~L~l~~~~ 679 (796)
+.. .|+.|++++|.
T Consensus 386 l~~-sL~~LdLs~N~ 399 (754)
T PRK15370 386 LPA-ALQIMQASRNN 399 (754)
T ss_pred HHH-HHHHHhhccCC
Confidence 211 56777777654
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.30 E-value=5.4e-14 Score=121.60 Aligned_cols=180 Identities=24% Similarity=0.249 Sum_probs=100.5
Q ss_pred CccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhccccCCCeeecCCccccccCcccCCCCCCcccCC
Q 003773 455 KLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTEKLKYLPIGISRLTSLRTLE 534 (796)
Q Consensus 455 ~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 534 (796)
.+.+...|.||+|+++.+|+.|..|.+|+.|++.+|. ++++|.++..|++|++|+++-| .+..+|.+||.++.|+.|+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhh
Confidence 4445555666666666666666666666666666544 6666666666666666666554 5556666666666666665
Q ss_pred CeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhccccccccccceEEEeccccCCCCCcCccCchhHHH
Q 003773 535 KFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQ 614 (796)
Q Consensus 535 ~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 614 (796)
+...+-+. ...+. .+..+..|+.|.++.|. .+.
T Consensus 109 ltynnl~e-~~lpg-------------------------------nff~m~tlralyl~dnd---------------fe~ 141 (264)
T KOG0617|consen 109 LTYNNLNE-NSLPG-------------------------------NFFYMTTLRALYLGDND---------------FEI 141 (264)
T ss_pred cccccccc-ccCCc-------------------------------chhHHHHHHHHHhcCCC---------------ccc
Confidence 32211110 00011 11122233333333332 122
Q ss_pred HHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCCCCCc-cccc----cccceeccccccceEe
Q 003773 615 LLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCEHLPP-LGKL----LLEKLTLYNLISVKRV 684 (796)
Q Consensus 615 ~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~-l~~l----~L~~L~l~~~~~l~~~ 684 (796)
++.....+.+|+.|.+..+....+|.-++.+..|++|.+.+|. +..+|+ ++.+ +=+.+.+.++..+.-+
T Consensus 142 lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr-l~vlppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 142 LPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR-LTVLPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred CChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce-eeecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 3334445566777777777777789999999999999999984 555655 6554 2233444444444333
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.26 E-value=3e-13 Score=132.66 Aligned_cols=92 Identities=26% Similarity=0.325 Sum_probs=48.9
Q ss_pred cccccccc-ccccCccccceEecCCCCcccc-chhhhccCCccEeeccccccccccch-hhccccCCCeeecCCcccccc
Q 003773 443 QNFIREIP-ENIGKLIHLKYLNLSELCIERL-PETLCELYNLQKLAVRWCTNLRELPA-GIGKLMNMRSLMNGQTEKLKY 519 (796)
Q Consensus 443 ~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~ 519 (796)
.|.|..+| ..|+.+++||.||||+|.|+.+ |..|..|+.|-.|-+.++..+..+|. .|+.|..|+.|.+.-|+..-.
T Consensus 76 qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Ci 155 (498)
T KOG4237|consen 76 QNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCI 155 (498)
T ss_pred cCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcch
Confidence 55555553 3455566666666666666543 44566666666665555444555554 355566666665555522222
Q ss_pred CcccCCCCCCcccCC
Q 003773 520 LPIGISRLTSLRTLE 534 (796)
Q Consensus 520 ~p~~i~~l~~L~~L~ 534 (796)
....+..|++|..|.
T Consensus 156 r~~al~dL~~l~lLs 170 (498)
T KOG4237|consen 156 RQDALRDLPSLSLLS 170 (498)
T ss_pred hHHHHHHhhhcchhc
Confidence 223344455555444
No 25
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.23 E-value=2.2e-11 Score=121.53 Aligned_cols=196 Identities=20% Similarity=0.190 Sum_probs=98.7
Q ss_pred ccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHH---------H
Q 003773 17 IEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAK---------A 87 (796)
Q Consensus 17 ~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~---------~ 87 (796)
||||++|++.+.+.... +..+.+.|+|+.|+|||+|++++.+.... ..+ .++|+............. .
T Consensus 1 F~gR~~el~~l~~~l~~-~~~~~~~l~G~rg~GKTsLl~~~~~~~~~-~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLES-GPSQHILLYGPRGSGKTSLLKEFINELKE-KGY-KVVYIDFLEESNESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH---SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSHHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHh-hcCcEEEEEcCCcCCHHHHHHHHHHHhhh-cCC-cEEEEecccchhhhHHHHHHHHHHHHHH
Confidence 79999999988877642 34578999999999999999999886311 111 344444433332221111 1
Q ss_pred HHHHhccCCC----------CCccHHHHHHHHHHHh--CCceEEEEEeCCCCCC--ccCh----hhHhhhccC--CCCCc
Q 003773 88 ILEVLDKSAS----------SLGEFQSLMQQTQESI--RGKKFFLVLDDVWDGD--FKKW----DPFFSCLKN--GHHES 147 (796)
Q Consensus 88 i~~~l~~~~~----------~~~~~~~~~~~~~~~l--~~~~~LlvlDd~~~~~--~~~~----~~l~~~~~~--~~~gs 147 (796)
+.+.+....+ ...........+.+.+ .+++++||+||+.... .... ..+...+.. .....
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 1222221111 1122223333333333 2445999999995532 0111 122222222 12233
Q ss_pred EEEEEecchhhhhc--------cCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHH
Q 003773 148 KILITTRDRSVALQ--------MGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKV 218 (796)
Q Consensus 148 ~iiiTsr~~~~~~~--------~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 218 (796)
.+|++.-...+... ......+.+++|+.+++.+++...+... ... +.-.+..++|+..+||+|..|..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 34444443322222 1233469999999999999999876322 111 12245579999999999998865
No 26
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.22 E-value=2.3e-13 Score=117.77 Aligned_cols=104 Identities=25% Similarity=0.408 Sum_probs=91.7
Q ss_pred hhcCcccceeeecccccCCCcccccccccccccCccccceEecCCCCccccchhhhccCCccEeeccccccc-cccchhh
Q 003773 422 FSKVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNL-RELPAGI 500 (796)
Q Consensus 422 ~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~-~~lp~~~ 500 (796)
+..+.+|++|+++ ++.+.++|.+++.+++|+.|+++-|.+..+|..|+.++-|+.|||.+|... ..+|..|
T Consensus 52 ia~l~nlevln~~--------nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnf 123 (264)
T KOG0617|consen 52 IAELKNLEVLNLS--------NNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNF 123 (264)
T ss_pred HHHhhhhhhhhcc--------cchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcch
Confidence 4567888999998 888999999999999999999999999999999999999999999987744 4688889
Q ss_pred ccccCCCeeecCCccccccCcccCCCCCCcccCC
Q 003773 501 GKLMNMRSLMNGQTEKLKYLPIGISRLTSLRTLE 534 (796)
Q Consensus 501 ~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 534 (796)
..|+.|+.|++++| -...+|..++++++||.|.
T Consensus 124 f~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~ 156 (264)
T KOG0617|consen 124 FYMTTLRALYLGDN-DFEILPPDVGKLTNLQILS 156 (264)
T ss_pred hHHHHHHHHHhcCC-CcccCChhhhhhcceeEEe
Confidence 99999999999998 5678899999999999885
No 27
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.22 E-value=9.6e-10 Score=111.96 Aligned_cols=182 Identities=14% Similarity=0.122 Sum_probs=114.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHH-----
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQE----- 111 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~----- 111 (796)
.+++.|+|++|+||||+++.+++.... ..+ .+.|+ +....+..+++..++..++..... .+.......+.+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHH
Confidence 458999999999999999999987331 111 12333 333456778888999888765332 222222333332
Q ss_pred HhCCceEEEEEeCCCCCCccChhhHhhhccC---CCCCcEEEEEecchhhhhcc----------CccceEEccCCChHhH
Q 003773 112 SIRGKKFFLVLDDVWDGDFKKWDPFFSCLKN---GHHESKILITTRDRSVALQM----------GSIDIISVKELGEEEC 178 (796)
Q Consensus 112 ~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~---~~~gs~iiiTsr~~~~~~~~----------~~~~~~~l~~l~~~e~ 178 (796)
...+++.++|+||++..+...++.+...... ......|++|.... ..... .....+++.+++.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 2367889999999987655555555432221 12223455665432 11111 1134688999999999
Q ss_pred HHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHHHHH
Q 003773 179 WSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLL 223 (796)
Q Consensus 179 ~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 223 (796)
.+++...+...+......-..+..+.|++.++|.|..|+.++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999987764322211112235678999999999999999998876
No 28
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.18 E-value=2e-09 Score=117.24 Aligned_cols=303 Identities=17% Similarity=0.186 Sum_probs=195.4
Q ss_pred hhccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCC-cCCHHHHH
Q 003773 7 EWTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSD-AFEEIRIA 85 (796)
Q Consensus 7 ~~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~ 85 (796)
+..-|..+...|=|.+-++.|-.. .+.|.+.|..++|.||||++.+.... . ..=..+.|.+++. +.++..+.
T Consensus 11 k~~~P~~~~~~v~R~rL~~~L~~~----~~~RL~li~APAGfGKttl~aq~~~~--~-~~~~~v~Wlslde~dndp~rF~ 83 (894)
T COG2909 11 KLVRPVRPDNYVVRPRLLDRLRRA----NDYRLILISAPAGFGKTTLLAQWREL--A-ADGAAVAWLSLDESDNDPARFL 83 (894)
T ss_pred ccCCCCCcccccccHHHHHHHhcC----CCceEEEEeCCCCCcHHHHHHHHHHh--c-CcccceeEeecCCccCCHHHHH
Confidence 444456677788888888877643 57799999999999999999988752 2 2234599998876 45778888
Q ss_pred HHHHHHhccCCCCCc-------------cHHHHHHHHHHHhC--CceEEEEEeCCCCCCccChhhHhhh-ccCCCCCcEE
Q 003773 86 KAILEVLDKSASSLG-------------EFQSLMQQTQESIR--GKKFFLVLDDVWDGDFKKWDPFFSC-LKNGHHESKI 149 (796)
Q Consensus 86 ~~i~~~l~~~~~~~~-------------~~~~~~~~~~~~l~--~~~~LlvlDd~~~~~~~~~~~l~~~-~~~~~~gs~i 149 (796)
..++..++...+... +...+...+...+. .++.++||||..-........-... +....++-.+
T Consensus 84 ~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~l 163 (894)
T COG2909 84 SYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTL 163 (894)
T ss_pred HHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEE
Confidence 888888875433322 23334444444332 5689999999966443444443333 4455677889
Q ss_pred EEEecchhh---hhccCccceEEcc----CCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHHHH
Q 003773 150 LITTRDRSV---ALQMGSIDIISVK----ELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNL 222 (796)
Q Consensus 150 iiTsr~~~~---~~~~~~~~~~~l~----~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~ 222 (796)
|+|||.+.- ++.--....+++. .|+.+|+.++|..... . +-.+..++.+....+|.+-|+..++=.
T Consensus 164 vv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~---l----~Ld~~~~~~L~~~teGW~~al~L~aLa 236 (894)
T COG2909 164 VVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS---L----PLDAADLKALYDRTEGWAAALQLIALA 236 (894)
T ss_pred EEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC---C----CCChHHHHHHHhhcccHHHHHHHHHHH
Confidence 999998532 2111112344443 5899999999987651 1 112445788999999999999999988
Q ss_pred HhcCCCHHHHHHHHhhhhccccccCCCccchhhhhccCCCChhhhhhHHhhhcCCCCCceecHHHHHHHHHHcCCcCCCC
Q 003773 223 LRSKRTVSEWQRILDSEMWKVEEIGKGLLPPLLLSYNDLPSSSMVKRCFSYCSVFPKDYNIRKEELITLWMAQCYLNSEE 302 (796)
Q Consensus 223 l~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~k~~fl~~~~fp~~~~i~~~~Li~~wia~g~i~~~~ 302 (796)
++...+.+.-...+......+.+ -...-.++.||+ .+|..++-+|+++.- -.+|+..-..
T Consensus 237 ~~~~~~~~q~~~~LsG~~~~l~d------YL~eeVld~Lp~--~l~~FLl~~svl~~f----~~eL~~~Ltg-------- 296 (894)
T COG2909 237 LRNNTSAEQSLRGLSGAASHLSD------YLVEEVLDRLPP--ELRDFLLQTSVLSRF----NDELCNALTG-------- 296 (894)
T ss_pred ccCCCcHHHHhhhccchHHHHHH------HHHHHHHhcCCH--HHHHHHHHHHhHHHh----hHHHHHHHhc--------
Confidence 88444443333322211000000 012235788998 899999999998642 1233333221
Q ss_pred ChhHHHHHHHHHHHHHhccccccccccCCCCeeeEEecHHHHHHHHHh
Q 003773 303 DEEMEIIGEEYFNILATRSFFQEFVKDYDDNVMSCKMHDIVHDFAQLV 350 (796)
Q Consensus 303 ~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~h~lv~~~~~~i 350 (796)
++-+..++++|..++++-..- ++....|+.|.+..++...-
T Consensus 297 ----~~ng~amLe~L~~~gLFl~~L---dd~~~WfryH~LFaeFL~~r 337 (894)
T COG2909 297 ----EENGQAMLEELERRGLFLQRL---DDEGQWFRYHHLFAEFLRQR 337 (894)
T ss_pred ----CCcHHHHHHHHHhCCCceeee---cCCCceeehhHHHHHHHHhh
Confidence 233677899999999875432 23334588999999987644
No 29
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.14 E-value=2.1e-09 Score=114.76 Aligned_cols=301 Identities=12% Similarity=0.063 Sum_probs=163.1
Q ss_pred ccCcccccHHHHHHHhcccC---CCCCcEEEEEEcCCCCcHHHHHHHHHcCcccc-ccC---CeEEEEEeCCcCCHHHHH
Q 003773 13 LKLQIEGLDDDNTLALASSE---QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVK-RKF---DIVIWVCVSDAFEEIRIA 85 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~f---~~~~wv~~~~~~~~~~~~ 85 (796)
.|..|+||++|++.+...+. .+...+.+.|+|++|+|||+++++++++.... ... -.++|+++....+...++
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 45689999999996655432 13344678999999999999999999863211 111 146788887777788899
Q ss_pred HHHHHHhc---cCCC-CCccHHHHHHHHHHHh--CCceEEEEEeCCCCCCccChhhHhhhccC----CC--CCcEEEEEe
Q 003773 86 KAILEVLD---KSAS-SLGEFQSLMQQTQESI--RGKKFFLVLDDVWDGDFKKWDPFFSCLKN----GH--HESKILITT 153 (796)
Q Consensus 86 ~~i~~~l~---~~~~-~~~~~~~~~~~~~~~l--~~~~~LlvlDd~~~~~~~~~~~l~~~~~~----~~--~gs~iiiTs 153 (796)
..+++++. ...+ ...+..+....+.+.+ .+++++||||+++.-....-+.+...+.. .. ....+|.++
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 99999884 2221 1123445555555555 35688999999966421111112222211 11 223455555
Q ss_pred cchhhhhccC-------ccceEEccCCChHhHHHHHHHHhhCC-CCCCCCcchhHHHHHHHHhcCCCchhH-HHHHHHH-
Q 003773 154 RDRSVALQMG-------SIDIISVKELGEEECWSLFKQVAFLG-RSFEDCEKLEPIGRKIACKCKGLPLAA-KVIGNLL- 223 (796)
Q Consensus 154 r~~~~~~~~~-------~~~~~~l~~l~~~e~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~~~g~PLal-~~~~~~l- 223 (796)
........+. ....+.+.+++.+|..+++..++... ....-.++..+.+.+++....|.+-.+ ..+-...
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5433211111 12468899999999999998886311 111112222334555677777887443 3332221
Q ss_pred -h--cC---CCHHHHHHHHhhhhccccccCCCccchhhhhccCCCChhhhhhHHhhhcCC--CCCceecHHHHHHHHHH-
Q 003773 224 -R--SK---RTVSEWQRILDSEMWKVEEIGKGLLPPLLLSYNDLPSSSMVKRCFSYCSVF--PKDYNIRKEELITLWMA- 294 (796)
Q Consensus 224 -~--~~---~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~k~~fl~~~~f--p~~~~i~~~~Li~~wia- 294 (796)
. .. -+.+....+.+... .....-+...||. +.+..+..++.. .++..+...++...+..
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~~----------~~~~~~~i~~l~~--~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKIE----------KDRLLELIRGLPT--HSKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHH----------HHHHHHHHHcCCH--HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 1 11 13333333333211 1122345567776 555444443321 13334555555553221
Q ss_pred cCCcCCCCChhHHHHHHHHHHHHHhcccccccc
Q 003773 295 QCYLNSEEDEEMEIIGEEYFNILATRSFFQEFV 327 (796)
Q Consensus 295 ~g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 327 (796)
...+.. ..-......+++..|...+++....
T Consensus 321 ~~~~~~--~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 321 CEDIGV--DPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHhcCC--CCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 111110 0112345667788888888887653
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.14 E-value=3.7e-12 Score=133.78 Aligned_cols=93 Identities=20% Similarity=0.155 Sum_probs=52.9
Q ss_pred HHhhhcCcccceeeecccccCCCcccccccccccccCccccceEecCCCCccc-------cchhhhccCCccEeeccccc
Q 003773 419 VELFSKVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIER-------LPETLCELYNLQKLAVRWCT 491 (796)
Q Consensus 419 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~-------lp~~i~~l~~L~~L~l~~~~ 491 (796)
...+..+..|+.|+++++.+.- .....++..+...+.|++|+++++.+.. ++..+.++++|+.|++++|.
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~---~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGE---EAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA 92 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcH---HHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence 4446666667777777432110 0112345555666677777777766542 33445566677777777666
Q ss_pred cccccchhhccccC---CCeeecCCc
Q 003773 492 NLRELPAGIGKLMN---MRSLMNGQT 514 (796)
Q Consensus 492 ~~~~lp~~~~~l~~---L~~L~l~~~ 514 (796)
.....+..+..+.+ |++|++++|
T Consensus 93 ~~~~~~~~~~~l~~~~~L~~L~ls~~ 118 (319)
T cd00116 93 LGPDGCGVLESLLRSSSLQELKLNNN 118 (319)
T ss_pred CChhHHHHHHHHhccCcccEEEeeCC
Confidence 44344444444444 677776666
No 31
>PF05729 NACHT: NACHT domain
Probab=99.12 E-value=6.4e-10 Score=104.17 Aligned_cols=144 Identities=19% Similarity=0.295 Sum_probs=90.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccccc----CCeEEEEEeCCcCCHH---HHHHHHHHHhccCCCCCccHHHHHHHHH
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRK----FDIVIWVCVSDAFEEI---RIAKAILEVLDKSASSLGEFQSLMQQTQ 110 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 110 (796)
|++.|+|.+|+||||+++.++.+...... +..++|+......... .+...|..+...... ........+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~~~~~~- 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA---PIEELLQEL- 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh---hhHHHHHHH-
Confidence 58899999999999999999887433332 4567777766543322 444444444432211 111111111
Q ss_pred HHhCCceEEEEEeCCCCCCcc-------ChhhHh-hhccC-CCCCcEEEEEecchhh---hhccCccceEEccCCChHhH
Q 003773 111 ESIRGKKFFLVLDDVWDGDFK-------KWDPFF-SCLKN-GHHESKILITTRDRSV---ALQMGSIDIISVKELGEEEC 178 (796)
Q Consensus 111 ~~l~~~~~LlvlDd~~~~~~~-------~~~~l~-~~~~~-~~~gs~iiiTsr~~~~---~~~~~~~~~~~l~~l~~~e~ 178 (796)
....++++||+|++++.... .+..+. ..+.. ..++.+++||+|.... .........+++.+|++++.
T Consensus 77 -~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 77 -LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred -HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 23578999999999663221 122223 23333 3568999999998654 33344456899999999999
Q ss_pred HHHHHHHh
Q 003773 179 WSLFKQVA 186 (796)
Q Consensus 179 ~~lf~~~~ 186 (796)
.+++++..
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99997764
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.03 E-value=3.1e-11 Score=126.80 Aligned_cols=65 Identities=22% Similarity=0.225 Sum_probs=42.2
Q ss_pred cccccCccccceEecCCCCcc-----ccchhhhccCCccEeeccccccc------cccchhhccccCCCeeecCCc
Q 003773 450 PENIGKLIHLKYLNLSELCIE-----RLPETLCELYNLQKLAVRWCTNL------RELPAGIGKLMNMRSLMNGQT 514 (796)
Q Consensus 450 p~~~~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~~~~~------~~lp~~~~~l~~L~~L~l~~~ 514 (796)
+..+..+.+|++|++++|.++ .++..+...++|++|+++++... ..++..+..+++|++|++++|
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 91 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDN 91 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCC
Confidence 334555667888888888874 45666777777888888776532 122334555667777777666
No 33
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.00 E-value=2.2e-09 Score=111.91 Aligned_cols=276 Identities=18% Similarity=0.135 Sum_probs=135.5
Q ss_pred cccccCcccccHHHHHHHhccc----CCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHH
Q 003773 10 TARLKLQIEGLDDDNTLALASS----EQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIA 85 (796)
Q Consensus 10 ~~~~~~~~vGr~~~~~~l~~~~----~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 85 (796)
.|..-.+||||++.++.+.... ......+.+.|+|++|+|||++|+.+++... ..+ .++.... ......+
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~--~~~---~~~~~~~-~~~~~~l 93 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG--VNI---RITSGPA-LEKPGDL 93 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhC--CCe---EEEeccc-ccChHHH
Confidence 3566778999999999543322 1233456788999999999999999998732 221 1222111 1111112
Q ss_pred HHHHHHhccCC-CCCccHHH----HHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecchhhhh
Q 003773 86 KAILEVLDKSA-SSLGEFQS----LMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDRSVAL 160 (796)
Q Consensus 86 ~~i~~~l~~~~-~~~~~~~~----~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~~~~ 160 (796)
..++..+.... --..+++. ..+.+...+.+.+..+++|+..... .+ ...+ .+.+-|..|++...+..
T Consensus 94 ~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~--~~---~~~l---~~~~li~at~~~~~l~~ 165 (328)
T PRK00080 94 AAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR--SI---RLDL---PPFTLIGATTRAGLLTS 165 (328)
T ss_pred HHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc--ce---eecC---CCceEEeecCCcccCCH
Confidence 22222221100 00000000 1111222223333444444331110 00 0001 12333555666443322
Q ss_pred ccC--ccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHHHHHhcCCCHHHHHHHHhh
Q 003773 161 QMG--SIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLLRSKRTVSEWQRILDS 238 (796)
Q Consensus 161 ~~~--~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w~~~l~~ 238 (796)
.+. ....+++.+++.++..+++.+.+..... .-.++.+..|++.|+|.|-.+..+...+. .|......
T Consensus 166 ~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~ 235 (328)
T PRK00080 166 PLRDRFGIVQRLEFYTVEELEKIVKRSARILGV----EIDEEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGD 235 (328)
T ss_pred HHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCC
Confidence 211 1246899999999999999988754322 12245688999999999965555444321 11111000
Q ss_pred hhccc-cccCCCccchhhhhccCCCChhhhhhHHh-hhcCCCCCceecHHHHHHHHHHcCCcCCCCChhHHHHHHHHHH-
Q 003773 239 EMWKV-EEIGKGLLPPLLLSYNDLPSSSMVKRCFS-YCSVFPKDYNIRKEELITLWMAQCYLNSEEDEEMEIIGEEYFN- 315 (796)
Q Consensus 239 ~~~~~-~~~~~~~~~~l~~s~~~L~~~~~~k~~fl-~~~~fp~~~~i~~~~Li~~wia~g~i~~~~~~~~~~~~~~~l~- 315 (796)
. .+ .+.-......+...+..|++ ..+..+. ....|+.+ .+..+.+.... ... ...+++.+.
T Consensus 236 ~--~I~~~~v~~~l~~~~~~~~~l~~--~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g~~-----~~~~~~~~e~ 299 (328)
T PRK00080 236 G--VITKEIADKALDMLGVDELGLDE--MDRKYLRTIIEKFGGG-PVGLDTLAAAL------GEE-----RDTIEDVYEP 299 (328)
T ss_pred C--CCCHHHHHHHHHHhCCCcCCCCH--HHHHHHHHHHHHcCCC-ceeHHHHHHHH------CCC-----cchHHHHhhH
Confidence 0 00 00001122334556677776 6666665 55556544 45544442222 111 123444455
Q ss_pred HHHhcccccc
Q 003773 316 ILATRSFFQE 325 (796)
Q Consensus 316 ~L~~~~ll~~ 325 (796)
.|++.++++.
T Consensus 300 ~Li~~~li~~ 309 (328)
T PRK00080 300 YLIQQGFIQR 309 (328)
T ss_pred HHHHcCCccc
Confidence 7889999863
No 34
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.97 E-value=1.6e-08 Score=104.95 Aligned_cols=264 Identities=17% Similarity=0.131 Sum_probs=133.3
Q ss_pred CcccccHHHHHHHhcccC----CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHH
Q 003773 15 LQIEGLDDDNTLALASSE----QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILE 90 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 90 (796)
.+|||+++.++.+...+. .....+.+.++|++|+|||++|+.+++.. ...+ ..+..........+. ..+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~--~~~~---~~~~~~~~~~~~~l~-~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM--GVNL---KITSGPALEKPGDLA-AILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCCE---EEeccchhcCchhHH-HHHH
Confidence 479999999996554332 12345568899999999999999999873 2222 112111111111211 1222
Q ss_pred HhccCCC-CCccHH----HHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecchhhhhccC--
Q 003773 91 VLDKSAS-SLGEFQ----SLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDRSVALQMG-- 163 (796)
Q Consensus 91 ~l~~~~~-~~~~~~----~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~~~~~~~-- 163 (796)
.++.... -..+++ .....+...+.+.+..+|+++..... .+. . ...+.+-|..|++...+.....
T Consensus 78 ~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~~---~---~~~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSAR--SVR---L---DLPPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred hcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccc--cee---e---cCCCeEEEEecCCccccCHHHHhh
Confidence 2211100 000000 11122333334444445555442211 110 0 1112344555666543332211
Q ss_pred ccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHHHHHhc------C--CCHHHHHHH
Q 003773 164 SIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLLRS------K--RTVSEWQRI 235 (796)
Q Consensus 164 ~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~------~--~~~~~w~~~ 235 (796)
....+++.+++.++..+++.+.+..... .-..+.+..|++.|+|.|-.+..++..+.. . -+.+..+..
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~----~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~ 225 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNV----EIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKA 225 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHH
Confidence 1246789999999999999988753222 122456788999999999776555543310 0 011111111
Q ss_pred HhhhhccccccCCCccchhhhhccCCCChhhhhhHHh-hhcCCCCCceecHHHHHHHHHHcCCcCCCCChhHHHHHHHHH
Q 003773 236 LDSEMWKVEEIGKGLLPPLLLSYNDLPSSSMVKRCFS-YCSVFPKDYNIRKEELITLWMAQCYLNSEEDEEMEIIGEEYF 314 (796)
Q Consensus 236 l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~k~~fl-~~~~fp~~~~i~~~~Li~~wia~g~i~~~~~~~~~~~~~~~l 314 (796)
...+...|..++. +.+..+. .++.+..+ .+....+.... ... ...++..+
T Consensus 226 ---------------l~~l~~~~~~l~~--~~~~~L~al~~~~~~~-~~~~~~ia~~l------g~~-----~~~~~~~~ 276 (305)
T TIGR00635 226 ---------------LEMLMIDELGLDE--IDRKLLSVLIEQFQGG-PVGLKTLAAAL------GED-----ADTIEDVY 276 (305)
T ss_pred ---------------HHHhCCCCCCCCH--HHHHHHHHHHHHhCCC-cccHHHHHHHh------CCC-----cchHHHhh
Confidence 1124456777777 6666555 44555433 34433322221 111 12355666
Q ss_pred H-HHHhcccccc
Q 003773 315 N-ILATRSFFQE 325 (796)
Q Consensus 315 ~-~L~~~~ll~~ 325 (796)
. .|++++++..
T Consensus 277 e~~Li~~~li~~ 288 (305)
T TIGR00635 277 EPYLLQIGFLQR 288 (305)
T ss_pred hHHHHHcCCccc
Confidence 7 6999999963
No 35
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.96 E-value=1.5e-08 Score=111.33 Aligned_cols=211 Identities=10% Similarity=0.060 Sum_probs=124.0
Q ss_pred ccCcccccHHHHHHHhcc----cCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccc---cccCC--eEEEEEeCCcCCHHH
Q 003773 13 LKLQIEGLDDDNTLALAS----SEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGV---KRKFD--IVIWVCVSDAFEEIR 83 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~----~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~---~~~f~--~~~wv~~~~~~~~~~ 83 (796)
.|+.++|||+|++.+... +.+.....++.|+|++|+|||++++.|.++... +.... .+++|.+....+...
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 567899999999944333 222334467889999999999999999876321 11111 267888877778888
Q ss_pred HHHHHHHHhccCCCC-CccHHHHHHHHHHHhC---CceEEEEEeCCCCCCccChhhHhhhccCC-CCCcEEEE--Eecch
Q 003773 84 IAKAILEVLDKSASS-LGEFQSLMQQTQESIR---GKKFFLVLDDVWDGDFKKWDPFFSCLKNG-HHESKILI--TTRDR 156 (796)
Q Consensus 84 ~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~l~---~~~~LlvlDd~~~~~~~~~~~l~~~~~~~-~~gs~iii--Tsr~~ 156 (796)
++..|++++....+. .....+....+.+.+. ....+||||+++.-....-+.+...+.+. ..+++|++ +|...
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 999999888543322 2233445555554442 23468999999653221223343333321 24555444 34322
Q ss_pred hhhhc----cC---ccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHHHHH
Q 003773 157 SVALQ----MG---SIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLL 223 (796)
Q Consensus 157 ~~~~~----~~---~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 223 (796)
+.... +. ....+...|++.+|-.+++..++...........++-+|+.+++..|-.-.||.++-.+.
T Consensus 913 DLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 913 DLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 21111 11 123467799999999999999875322222333334444444444444566666665554
No 36
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.93 E-value=1.6e-08 Score=100.96 Aligned_cols=259 Identities=17% Similarity=0.171 Sum_probs=138.0
Q ss_pred ccccCcccccHHHHH--HHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHH
Q 003773 11 ARLKLQIEGLDDDNT--LALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAI 88 (796)
Q Consensus 11 ~~~~~~~vGr~~~~~--~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 88 (796)
|..-+++||.+.-+. ..+....+.+.+....+||++|+||||||+.++.. ....|.. ++...+
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f~~-----~sAv~~-------- 84 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGT--TNAAFEA-----LSAVTS-------- 84 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHh--hCCceEE-----eccccc--------
Confidence 555667888888775 33333333456667779999999999999999986 4455532 222111
Q ss_pred HHHhccCCCCCccHHHHHHHH-HHHhCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEE--Eecchhhh--hc-c
Q 003773 89 LEVLDKSASSLGEFQSLMQQT-QESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILI--TTRDRSVA--LQ-M 162 (796)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~~~~-~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iii--Tsr~~~~~--~~-~ 162 (796)
...++.++++.- +....+++.+|++|.|..-+..+.+.+.+. -..|.-|+| ||.++... .. .
T Consensus 85 ---------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~---vE~G~iilIGATTENPsF~ln~ALl 152 (436)
T COG2256 85 ---------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPH---VENGTIILIGATTENPSFELNPALL 152 (436)
T ss_pred ---------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhh---hcCCeEEEEeccCCCCCeeecHHHh
Confidence 112222223333 223458999999999976544444455443 344565665 55554221 11 1
Q ss_pred CccceEEccCCChHhHHHHHHHHhhCCCCCCC--Cc-chhHHHHHHHHhcCCCchhHH---HHHHHHhcCC---CHHHHH
Q 003773 163 GSIDIISVKELGEEECWSLFKQVAFLGRSFED--CE-KLEPIGRKIACKCKGLPLAAK---VIGNLLRSKR---TVSEWQ 233 (796)
Q Consensus 163 ~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~--~~-~~~~~~~~i~~~~~g~PLal~---~~~~~l~~~~---~~~~w~ 233 (796)
....++++++|+.++-.+++.+.+......-. .. -.++...-+++.++|--.+.- .++..+.... ..+.-+
T Consensus 153 SR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~ 232 (436)
T COG2256 153 SRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLE 232 (436)
T ss_pred hhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHH
Confidence 23579999999999999999884321111111 11 124466778888888654322 2222222221 244455
Q ss_pred HHHhhhhccccccCC---CccchhhhhccCCCChhhhhhHHhhhcCCCCC-c---eecHHHHHHHHHHcCCcCC
Q 003773 234 RILDSEMWKVEEIGK---GLLPPLLLSYNDLPSSSMVKRCFSYCSVFPKD-Y---NIRKEELITLWMAQCYLNS 300 (796)
Q Consensus 234 ~~l~~~~~~~~~~~~---~~~~~l~~s~~~L~~~~~~k~~fl~~~~fp~~-~---~i~~~~Li~~wia~g~i~~ 300 (796)
+++++.........+ ++...+..|.-.=.+ -. -+.|+|-+.+. . -|.|+.++.-|-.-|+.++
T Consensus 233 ~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~---dA-ALyylARmi~~GeDp~yiARRlv~~AsEDIGlAdP 302 (436)
T COG2256 233 EILQRRSARFDKDGDAHYDLISALHKSVRGSDP---DA-ALYYLARMIEAGEDPLYIARRLVRIASEDIGLADP 302 (436)
T ss_pred HHHhhhhhccCCCcchHHHHHHHHHHhhccCCc---CH-HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCCh
Confidence 555543322222222 233444445443222 22 23344333222 1 2556666666655566544
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.82 E-value=3.5e-10 Score=116.70 Aligned_cols=102 Identities=36% Similarity=0.537 Sum_probs=79.9
Q ss_pred hhcCcccceeeecccccCCCcccccccccccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhc
Q 003773 422 FSKVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIG 501 (796)
Q Consensus 422 ~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~ 501 (796)
+..|..|..|.|. .|.+..+|..++++..|.||+|+.|++..+|..++.|+ |+.|-+++|+ +..+|..++
T Consensus 94 ~~~f~~Le~liLy--------~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig 163 (722)
T KOG0532|consen 94 ACAFVSLESLILY--------HNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIG 163 (722)
T ss_pred HHHHHHHHHHHHH--------hccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc-cccCCcccc
Confidence 5666777777777 67777888888888888888888888888888877654 7888888655 778888888
Q ss_pred cccCCCeeecCCccccccCcccCCCCCCcccCC
Q 003773 502 KLMNMRSLMNGQTEKLKYLPIGISRLTSLRTLE 534 (796)
Q Consensus 502 ~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 534 (796)
.+..|.+|+.+.| .+..+|..++.+.+|+.|.
T Consensus 164 ~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 164 LLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLN 195 (722)
T ss_pred cchhHHHhhhhhh-hhhhchHHhhhHHHHHHHH
Confidence 7888888888877 5667777777777777775
No 38
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.82 E-value=6.8e-08 Score=105.90 Aligned_cols=195 Identities=12% Similarity=0.082 Sum_probs=123.3
Q ss_pred hhhhccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccc------------------
Q 003773 5 LEEWTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRK------------------ 66 (796)
Q Consensus 5 ~~~~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~------------------ 66 (796)
+-+.+.|..-+++||.+..++.|......+.-...+.++|..|+||||+|+.+++.......
T Consensus 6 LarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G 85 (830)
T PRK07003 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEG 85 (830)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcC
Confidence 34445588888999999999987776654444567789999999999999988875321111
Q ss_pred -CCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHH-HhCCceEEEEEeCCCCCCccChhhHhhhccCCC
Q 003773 67 -FDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQE-SIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGH 144 (796)
Q Consensus 67 -f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~ 144 (796)
|.-+++++...+....+ +.++++.... -..++.-++|||+++..+...+..++..+....
T Consensus 86 ~h~DviEIDAas~rgVDd------------------IReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP 147 (830)
T PRK07003 86 RFVDYVEMDAASNRGVDE------------------MAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPP 147 (830)
T ss_pred CCceEEEecccccccHHH------------------HHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcC
Confidence 11123332222111111 1111111111 113455688999998776667788888777666
Q ss_pred CCcEEEEEecchh-hhhc-cCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCc-hhHHHHHH
Q 003773 145 HESKILITTRDRS-VALQ-MGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLP-LAAKVIGN 221 (796)
Q Consensus 145 ~gs~iiiTsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~~~ 221 (796)
...++|++|++.. +... ......+.++.++.++..+.+.+.+..++.. -..+....|++.++|.. -|+..+-.
T Consensus 148 ~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~----id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 148 PHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA----FEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred CCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 6788888887743 2211 1225689999999999999998876433221 12456788999998855 45555433
No 39
>PRK06893 DNA replication initiation factor; Validated
Probab=98.80 E-value=5.3e-08 Score=95.49 Aligned_cols=180 Identities=12% Similarity=0.095 Sum_probs=103.9
Q ss_pred cccCcccccHHHHH--HHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHH
Q 003773 12 RLKLQIEGLDDDNT--LALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAIL 89 (796)
Q Consensus 12 ~~~~~~vGr~~~~~--~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 89 (796)
..-++|+|-+.... .+.+... ....+.+.|+|++|+|||+|++++++.. ......+.|+.+... .....
T Consensus 13 ~~fd~f~~~~~~~~~~~~~~~~~-~~~~~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~y~~~~~~---~~~~~--- 83 (229)
T PRK06893 13 ETLDNFYADNNLLLLDSLRKNFI-DLQQPFFYIWGGKSSGKSHLLKAVSNHY--LLNQRTAIYIPLSKS---QYFSP--- 83 (229)
T ss_pred ccccccccCChHHHHHHHHHHhh-ccCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEeeHHHh---hhhhH---
Confidence 34456775443322 2222222 2234678999999999999999999873 222334567665311 00000
Q ss_pred HHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCC-ccChh-hHhhhccCC-CCCcEEEE-Eecc---------h
Q 003773 90 EVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGD-FKKWD-PFFSCLKNG-HHESKILI-TTRD---------R 156 (796)
Q Consensus 90 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~-~~~~~-~l~~~~~~~-~~gs~iii-Tsr~---------~ 156 (796)
.+.+.+. +.-+|++||+|... ...|+ .+...+... ..|..+|+ |++. +
T Consensus 84 ------------------~~~~~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~ 144 (229)
T PRK06893 84 ------------------AVLENLE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLP 144 (229)
T ss_pred ------------------HHHhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccch
Confidence 1111122 23489999998632 23454 344434332 23455554 4543 2
Q ss_pred hhhhccCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHHHHH
Q 003773 157 SVALQMGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLL 223 (796)
Q Consensus 157 ~~~~~~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 223 (796)
++...+.....+++++++.++.++++++.+...+- .--+++..-|++.+.|..-++..+-..+
T Consensus 145 ~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l----~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 145 DLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGI----ELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred hHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 44444455568999999999999999998864322 1225667788888888776655544433
No 40
>PTZ00202 tuzin; Provisional
Probab=98.77 E-value=4.7e-07 Score=92.41 Aligned_cols=166 Identities=15% Similarity=0.246 Sum_probs=102.5
Q ss_pred ccccccCcccccHHHHHHHhcccC--CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHH
Q 003773 9 TTARLKLQIEGLDDDNTLALASSE--QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAK 86 (796)
Q Consensus 9 ~~~~~~~~~vGr~~~~~~l~~~~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 86 (796)
..|++...||||++|+.++...+. +....+++.|.|++|+|||||++.+..... + ..++++.. +..+++.
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr 327 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLR 327 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHH
Confidence 467788899999999996665542 122356999999999999999999987632 1 13333332 6799999
Q ss_pred HHHHHhccCCCCCccHHHHHHHHHHHh------CCceEEEEEeCCCCCC-ccChhhHhhhccCCCCCcEEEEEecchhhh
Q 003773 87 AILEVLDKSASSLGEFQSLMQQTQESI------RGKKFFLVLDDVWDGD-FKKWDPFFSCLKNGHHESKILITTRDRSVA 159 (796)
Q Consensus 87 ~i~~~l~~~~~~~~~~~~~~~~~~~~l------~~~~~LlvlDd~~~~~-~~~~~~l~~~~~~~~~gs~iiiTsr~~~~~ 159 (796)
.+++.|+..... ...++.+.|.+.+ ++++.+||+-==..++ ..-+.+.. .+.....-|+|++---.+.+.
T Consensus 328 ~LL~ALGV~p~~--~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt 404 (550)
T PTZ00202 328 SVVKALGVPNVE--ACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLT 404 (550)
T ss_pred HHHHHcCCCCcc--cHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcc
Confidence 999999974322 2233334444333 2666777664221111 11122211 123334567888765544332
Q ss_pred hc---cCccceEEccCCChHhHHHHHHHH
Q 003773 160 LQ---MGSIDIISVKELGEEECWSLFKQV 185 (796)
Q Consensus 160 ~~---~~~~~~~~l~~l~~~e~~~lf~~~ 185 (796)
.. ...-+.|.+.+++.++|.++-...
T Consensus 405 ~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 405 IANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 11 223468999999999998887554
No 41
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.77 E-value=1.4e-07 Score=102.31 Aligned_cols=191 Identities=15% Similarity=0.131 Sum_probs=119.7
Q ss_pred hhhhhccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCC---------------
Q 003773 4 VLEEWTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFD--------------- 68 (796)
Q Consensus 4 ~~~~~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~--------------- 68 (796)
++-+...|..-+++||.+...+.|..+...+.-...+.++|+.|+||||+|+.+++........+
T Consensus 4 ~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~ 83 (702)
T PRK14960 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNE 83 (702)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhc
Confidence 34445558888899999999998777665444457889999999999999999887632111110
Q ss_pred ----eEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHH-HhCCceEEEEEeCCCCCCccChhhHhhhccCC
Q 003773 69 ----IVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQE-SIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNG 143 (796)
Q Consensus 69 ----~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~ 143 (796)
-++.++.+..... .++.+++..+.. -..++.-++|+|+++..+......+...+...
T Consensus 84 g~hpDviEIDAAs~~~V------------------ddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEP 145 (702)
T PRK14960 84 GRFIDLIEIDAASRTKV------------------EDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEP 145 (702)
T ss_pred CCCCceEEecccccCCH------------------HHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcC
Confidence 1122221111111 111111111111 12356678999999776656677777777665
Q ss_pred CCCcEEEEEecchh-hhhc-cCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhH
Q 003773 144 HHESKILITTRDRS-VALQ-MGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAA 216 (796)
Q Consensus 144 ~~gs~iiiTsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 216 (796)
....++|++|.+.. +... ......+++++++.++..+.+.+.+...+.. -..+....|++.++|.+..+
T Consensus 146 P~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~----id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 146 PEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA----ADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred CCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 56677888776532 2111 2335789999999999999998876433221 22455778999999976433
No 42
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.77 E-value=1.4e-07 Score=109.40 Aligned_cols=312 Identities=14% Similarity=0.120 Sum_probs=171.2
Q ss_pred cccccHHHHHHHhccc--CCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeC---CcCC---HHHHHHH
Q 003773 16 QIEGLDDDNTLALASS--EQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVS---DAFE---EIRIAKA 87 (796)
Q Consensus 16 ~~vGr~~~~~~l~~~~--~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~---~~~~---~~~~~~~ 87 (796)
.++||+.|++.|+... ...+...++.+.|.+|||||+++++|... ..+.+...+--.+. .+.. ..+.+++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 3799999999777653 22345579999999999999999999987 32322222211121 1211 1223333
Q ss_pred HHHHh-------------------ccCC--------------C---C-----CccHHHHH-----HHHHHHh-CCceEEE
Q 003773 88 ILEVL-------------------DKSA--------------S---S-----LGEFQSLM-----QQTQESI-RGKKFFL 120 (796)
Q Consensus 88 i~~~l-------------------~~~~--------------~---~-----~~~~~~~~-----~~~~~~l-~~~~~Ll 120 (796)
++.++ +... . + ....+... ..+.-.. +.++.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 33333 1100 0 0 00011111 1122222 4569999
Q ss_pred EEeCCCCCCccChhhHhhhccCCC------CCcEEEEEecch--hhhhccCccceEEccCCChHhHHHHHHHHhhCCCCC
Q 003773 121 VLDDVWDGDFKKWDPFFSCLKNGH------HESKILITTRDR--SVALQMGSIDIISVKELGEEECWSLFKQVAFLGRSF 192 (796)
Q Consensus 121 vlDd~~~~~~~~~~~l~~~~~~~~------~gs~iiiTsr~~--~~~~~~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~ 192 (796)
|+||+...+....+.+........ ...-.+.|.+.. .+.........+.+.||+..+...+........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~--- 235 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT--- 235 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc---
Confidence 999994443333333322222111 011122333332 222223345799999999999999998876321
Q ss_pred CCCcchhHHHHHHHHhcCCCchhHHHHHHHHhcC------CCHHHHHHHHhhhhccccccCCCccchhhhhccCCCChhh
Q 003773 193 EDCEKLEPIGRKIACKCKGLPLAAKVIGNLLRSK------RTVSEWQRILDSEMWKVEEIGKGLLPPLLLSYNDLPSSSM 266 (796)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~------~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~ 266 (796)
.....+....|+++..|+|+.+..+-..+... .+...|..-... ......-+++...+..-.+.||. .
T Consensus 236 --~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~--i~~~~~~~~vv~~l~~rl~kL~~--~ 309 (849)
T COG3899 236 --KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS--LGILATTDAVVEFLAARLQKLPG--T 309 (849)
T ss_pred --ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh--cCCchhhHHHHHHHHHHHhcCCH--H
Confidence 22235668899999999999999999999774 233344322111 00011112233447778899998 8
Q ss_pred hhhHHhhhcCCCCCceecHHHHHHHHHHcCCcCCCCChhHHHHHHHHHHHHHhccccccccccCCCCee--e-E-EecHH
Q 003773 267 VKRCFSYCSVFPKDYNIRKEELITLWMAQCYLNSEEDEEMEIIGEEYFNILATRSFFQEFVKDYDDNVM--S-C-KMHDI 342 (796)
Q Consensus 267 ~k~~fl~~~~fp~~~~i~~~~Li~~wia~g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~--~-~-~~h~l 342 (796)
.|+.+...|++...+. .+.|-..+-. .....+....+.+....++.....-..+... . | -.|+.
T Consensus 310 t~~Vl~~AA~iG~~F~--l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~ 377 (849)
T COG3899 310 TREVLKAAACIGNRFD--LDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDR 377 (849)
T ss_pred HHHHHHHHHHhCccCC--HHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHH
Confidence 9999999999987665 4444444321 2344566666766666665422111111111 1 2 25777
Q ss_pred HHHHHHHh
Q 003773 343 VHDFAQLV 350 (796)
Q Consensus 343 v~~~~~~i 350 (796)
+++.+-..
T Consensus 378 vqqaaY~~ 385 (849)
T COG3899 378 VQQAAYNL 385 (849)
T ss_pred HHHHHhcc
Confidence 77765443
No 43
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=2.9e-07 Score=97.09 Aligned_cols=203 Identities=16% Similarity=0.111 Sum_probs=115.1
Q ss_pred hhhccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHH
Q 003773 6 EEWTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIA 85 (796)
Q Consensus 6 ~~~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 85 (796)
.+...|..-.+++|.+..++.+......+.-...+.++|+.|+||||+|+.+++..........- .+.....-..+.
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~---pc~~c~~c~~~~ 83 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSN---PCRKCIICKEIE 83 (363)
T ss_pred HHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCC---CCCCCHHHHHHh
Confidence 34445778889999999999776655444445678999999999999999998763211111000 000000000000
Q ss_pred HHHHHHhc-cCC---CCCccHHHHHHHHHHH-hCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecch-hhh
Q 003773 86 KAILEVLD-KSA---SSLGEFQSLMQQTQES-IRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDR-SVA 159 (796)
Q Consensus 86 ~~i~~~l~-~~~---~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~-~~~ 159 (796)
....-.+. ... ....+..++.+.+... ..+++-++|+|+++......++.+...+.......++|++|.+. .+.
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIP 163 (363)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhh
Confidence 00000000 000 0011111111111100 12456799999997765556677777776655666777777553 222
Q ss_pred hcc-CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchh
Q 003773 160 LQM-GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLA 215 (796)
Q Consensus 160 ~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 215 (796)
..+ .....+++.+++.++..+.+.+.+...+.. -.++.+..|++.++|.|-.
T Consensus 164 ~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~----i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 164 KTILSRCLQFKLKIISEEKIFNFLKYILIKESID----TDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred HHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHH
Confidence 221 224689999999999999888876432211 1245577899999997753
No 44
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=3.2e-08 Score=107.44 Aligned_cols=211 Identities=15% Similarity=0.116 Sum_probs=120.8
Q ss_pred hhhhccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHH
Q 003773 5 LEEWTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRI 84 (796)
Q Consensus 5 ~~~~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 84 (796)
++++. |..-++++|.+..++.|......+.-...+.++|++|+||||+|+.+++.....+.+...+|.|.+.. .....
T Consensus 5 ~~KyR-P~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~ 82 (504)
T PRK14963 5 YQRAR-PITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRG 82 (504)
T ss_pred HHhhC-CCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcC
Confidence 33443 77888899999998877666554444567799999999999999999886432222222222221100 00000
Q ss_pred HHHHHHHhccC-CCCCccHHHHHHHHHH-HhCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecc-hhhhhc
Q 003773 85 AKAILEVLDKS-ASSLGEFQSLMQQTQE-SIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRD-RSVALQ 161 (796)
Q Consensus 85 ~~~i~~~l~~~-~~~~~~~~~~~~~~~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~-~~~~~~ 161 (796)
...-...+... .....++.++...+.. -..+++-++|+|+++......+..+...+......+.+|+++.. ..+...
T Consensus 83 ~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~ 162 (504)
T PRK14963 83 AHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPT 162 (504)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChH
Confidence 00000000000 0011112222221211 12356678999999776666677777777665555566666544 333222
Q ss_pred c-CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCch-hHHHHHH
Q 003773 162 M-GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPL-AAKVIGN 221 (796)
Q Consensus 162 ~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~~~ 221 (796)
+ .....+++.+++.++..+.+.+.+...+... ..+.+..|++.++|.+- ++..+-.
T Consensus 163 I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i----~~~Al~~ia~~s~GdlR~aln~Lek 220 (504)
T PRK14963 163 ILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA----EPEALQLVARLADGAMRDAESLLER 220 (504)
T ss_pred HhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2 2246899999999999999988774333211 24567889999999885 4444433
No 45
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.75 E-value=6.9e-08 Score=103.79 Aligned_cols=183 Identities=17% Similarity=0.170 Sum_probs=106.2
Q ss_pred cccccCcccccHHHHHH---HhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHH
Q 003773 10 TARLKLQIEGLDDDNTL---ALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAK 86 (796)
Q Consensus 10 ~~~~~~~~vGr~~~~~~---l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 86 (796)
.|..-++|||++..+.. +..... ......+.++|++|+||||+|+.+++. ....| +.+.... .....
T Consensus 7 RP~~l~d~vGq~~~v~~~~~L~~~i~-~~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~---~~l~a~~-~~~~~--- 76 (413)
T PRK13342 7 RPKTLDEVVGQEHLLGPGKPLRRMIE-AGRLSSMILWGPPGTGKTTLARIIAGA--TDAPF---EALSAVT-SGVKD--- 76 (413)
T ss_pred CCCCHHHhcCcHHHhCcchHHHHHHH-cCCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEEeccc-ccHHH---
Confidence 35566789999987653 433333 334567889999999999999999886 32232 1122111 11111
Q ss_pred HHHHHhccCCCCCccHHHHHHHHHHH-hCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEE--ecchh--hhhc
Q 003773 87 AILEVLDKSASSLGEFQSLMQQTQES-IRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILIT--TRDRS--VALQ 161 (796)
Q Consensus 87 ~i~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiT--sr~~~--~~~~ 161 (796)
..+..+..... ..+++.++++|+++.......+.+...+.. +..++|. |.+.. +...
T Consensus 77 ---------------ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 77 ---------------LREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPA 138 (413)
T ss_pred ---------------HHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHH
Confidence 11111222111 245788999999977554455555555443 4444443 33321 1111
Q ss_pred -cCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHHH
Q 003773 162 -MGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIGN 221 (796)
Q Consensus 162 -~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~ 221 (796)
......+++.+++.++..+++.+.+..... ....-..+..+.+++.++|.+..+.-+..
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~-~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKER-GLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 122468999999999999999886532111 00022245678899999999876654443
No 46
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.74 E-value=2e-08 Score=89.70 Aligned_cols=118 Identities=22% Similarity=0.225 Sum_probs=80.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccc---ccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHH
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVK---RKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQES 112 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 112 (796)
+.+.+.|+|++|+|||++++.+++..... ..-..++|+.+....+...+...++++++.......+.++..+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34689999999999999999998862111 013447799988888999999999999998766656667777777777
Q ss_pred hCCce-EEEEEeCCCCC-CccChhhHhhhccCCCCCcEEEEEecc
Q 003773 113 IRGKK-FFLVLDDVWDG-DFKKWDPFFSCLKNGHHESKILITTRD 155 (796)
Q Consensus 113 l~~~~-~LlvlDd~~~~-~~~~~~~l~~~~~~~~~gs~iiiTsr~ 155 (796)
+...+ .+||+|+++.- ....++.+.. +.+ ..+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~-l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRS-LLN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHH-HTC-SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHH-HHh-CCCCeEEEEECh
Confidence 76554 59999999654 3333333333 222 566778887775
No 47
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=2.4e-07 Score=103.76 Aligned_cols=189 Identities=16% Similarity=0.126 Sum_probs=119.6
Q ss_pred hhccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCC------------------
Q 003773 7 EWTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFD------------------ 68 (796)
Q Consensus 7 ~~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~------------------ 68 (796)
+...|..-.++||.+..++.|......+.-...+.++|+.|+||||+|+.+++........+
T Consensus 8 eKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~ 87 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRF 87 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCC
Confidence 34447788899999999997766554333446678999999999999999998732211111
Q ss_pred -eEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHH-HhCCceEEEEEeCCCCCCccChhhHhhhccCCCCC
Q 003773 69 -IVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQE-SIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHE 146 (796)
Q Consensus 69 -~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~g 146 (796)
-+++++..... ...++.++++.+.. -..+++-++|+|+++.........+...+......
T Consensus 88 ~DviEidAas~~------------------kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~ 149 (944)
T PRK14949 88 VDLIEVDAASRT------------------KVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEH 149 (944)
T ss_pred ceEEEecccccc------------------CHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCC
Confidence 11222111111 11122222222221 12467789999999877777778888877766666
Q ss_pred cEEEEEecch-hhhhc-cCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHH
Q 003773 147 SKILITTRDR-SVALQ-MGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAK 217 (796)
Q Consensus 147 s~iiiTsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 217 (796)
.++|++|.+. .+... ......|++++++.++..+++.+.+...+. ....+.+..|++.++|.|--+.
T Consensus 150 vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI----~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 150 VKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL----PFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred eEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 7777666553 23211 122478999999999999999887643211 1224567889999999885443
No 48
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.71 E-value=1.3e-07 Score=93.37 Aligned_cols=178 Identities=15% Similarity=0.106 Sum_probs=101.9
Q ss_pred cCcccc--cHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHH
Q 003773 14 KLQIEG--LDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEV 91 (796)
Q Consensus 14 ~~~~vG--r~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 91 (796)
-++|++ .+..++.+.+... ....+.|.|+|++|+|||++|+.+++.. ......++++++..-.. ..
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~-~~~~~~lll~G~~G~GKT~la~~~~~~~--~~~~~~~~~i~~~~~~~------~~--- 81 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAA-GKGDRFLYLWGESGSGKSHLLQAACAAA--EERGKSAIYLPLAELAQ------AD--- 81 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHh-cCCCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCcEEEEeHHHHHH------hH---
Confidence 345663 3334444444322 2345689999999999999999998863 22333456666543211 00
Q ss_pred hccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCcc-C-hhhHhhhccC-CCCCcEEEEEecchh---------hh
Q 003773 92 LDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFK-K-WDPFFSCLKN-GHHESKILITTRDRS---------VA 159 (796)
Q Consensus 92 l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~-~-~~~l~~~~~~-~~~gs~iiiTsr~~~---------~~ 159 (796)
.+ +...+.+ .-++|+||++..... . ...+...+.. ...+.++|+|++... +.
T Consensus 82 -----------~~----~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~ 145 (226)
T TIGR03420 82 -----------PE----VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLR 145 (226)
T ss_pred -----------HH----HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHH
Confidence 00 1111222 238999999653322 2 2334443332 123347888888532 11
Q ss_pred hccCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHHHHH
Q 003773 160 LQMGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLL 223 (796)
Q Consensus 160 ~~~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 223 (796)
..+.....+++.+++.++...+++..+..... .--++..+.+++.+.|+|..+..+...+
T Consensus 146 ~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~----~~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 146 TRLAWGLVFQLPPLSDEEKIAALQSRAARRGL----QLPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred HHHhcCeeEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 12222357999999999999998876532221 1224556778888999998777665443
No 49
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.70 E-value=2.3e-07 Score=100.52 Aligned_cols=191 Identities=16% Similarity=0.114 Sum_probs=119.1
Q ss_pred hhhhccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc-------------------
Q 003773 5 LEEWTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKR------------------- 65 (796)
Q Consensus 5 ~~~~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~------------------- 65 (796)
+-+...|..-+++||.+.-++.|......+.-...+.++|..|+||||+|+.+++......
T Consensus 6 LarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~ 85 (700)
T PRK12323 6 LARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACT 85 (700)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHH
Confidence 3444557888899999999997777665454557788999999999999998887532110
Q ss_pred -----cCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHH-hCCceEEEEEeCCCCCCccChhhHhhh
Q 003773 66 -----KFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQES-IRGKKFFLVLDDVWDGDFKKWDPFFSC 139 (796)
Q Consensus 66 -----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~ 139 (796)
.|.-+++++....... .++.++++.+... ..++.-++|+|+++..+...+..+...
T Consensus 86 ~I~aG~hpDviEIdAas~~gV------------------DdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKT 147 (700)
T PRK12323 86 EIDAGRFVDYIEMDAASNRGV------------------DEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKT 147 (700)
T ss_pred HHHcCCCCcceEecccccCCH------------------HHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHh
Confidence 0101222221111111 1122222221111 245667999999987776777788877
Q ss_pred ccCCCCCcEEEEEecc-hhhhhcc-CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHH
Q 003773 140 LKNGHHESKILITTRD-RSVALQM-GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAK 217 (796)
Q Consensus 140 ~~~~~~gs~iiiTsr~-~~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 217 (796)
+..-...+++|++|.+ ..+...+ .....+.++.++.++..+.+.+.+..++.. ...+....|++.++|.|....
T Consensus 148 LEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~----~d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 148 LEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA----HEVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred hccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHH
Confidence 7665556676666654 3332221 225689999999999999988776432211 123456789999999886443
No 50
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.70 E-value=3.9e-07 Score=98.20 Aligned_cols=201 Identities=16% Similarity=0.189 Sum_probs=116.0
Q ss_pred ChhhhhhhccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccc--------------
Q 003773 1 MEDVLEEWTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRK-------------- 66 (796)
Q Consensus 1 ~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-------------- 66 (796)
|+...+++. |..-+++||.+...+.|......+.-...+.++|++|+||||+|+.+++.......
T Consensus 1 ~~~l~~kyR-P~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~ 79 (472)
T PRK14962 1 MEALYRKYR-PKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRS 79 (472)
T ss_pred CchhHHHHC-CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHH
Confidence 444454444 77888999999887766655443333466889999999999999999876321110
Q ss_pred -----CCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhcc
Q 003773 67 -----FDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLK 141 (796)
Q Consensus 67 -----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~ 141 (796)
+..++.++.+.......+ +++.+.... .-..+++-++|+|+++.-.....+.+...+.
T Consensus 80 i~~g~~~dv~el~aa~~~gid~i-R~i~~~~~~----------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE 142 (472)
T PRK14962 80 IDEGTFMDVIELDAASNRGIDEI-RKIRDAVGY----------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLE 142 (472)
T ss_pred HhcCCCCccEEEeCcccCCHHHH-HHHHHHHhh----------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHH
Confidence 001222222211111111 111111100 0123567799999996544445556666665
Q ss_pred CCCCCcEEEEEecc-hhhhhcc-CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCC-CchhHHH
Q 003773 142 NGHHESKILITTRD-RSVALQM-GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKG-LPLAAKV 218 (796)
Q Consensus 142 ~~~~gs~iiiTsr~-~~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~PLal~~ 218 (796)
.......+|++|.+ ..+...+ .....+++.+++.++....+.+.+...+.. -..+....|++.++| .+.|+..
T Consensus 143 ~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~----i~~eal~~Ia~~s~GdlR~aln~ 218 (472)
T PRK14962 143 EPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE----IDREALSFIAKRASGGLRDALTM 218 (472)
T ss_pred hCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHhCCCHHHHHHH
Confidence 54444545545443 3332222 234689999999999999888877432221 124556778887765 5677777
Q ss_pred HHHHH
Q 003773 219 IGNLL 223 (796)
Q Consensus 219 ~~~~l 223 (796)
+....
T Consensus 219 Le~l~ 223 (472)
T PRK14962 219 LEQVW 223 (472)
T ss_pred HHHHH
Confidence 76544
No 51
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.68 E-value=4.1e-07 Score=96.07 Aligned_cols=203 Identities=14% Similarity=0.079 Sum_probs=112.0
Q ss_pred cccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCC-eEEEEEeCCcCCH--HHHHH
Q 003773 10 TARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFD-IVIWVCVSDAFEE--IRIAK 86 (796)
Q Consensus 10 ~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~--~~~~~ 86 (796)
.|..-++|+|++..++.+...... +..+.+.++|++|+||||+|+.+++.... ..+. ..+.++++.-... ..+..
T Consensus 10 ~P~~~~~~~g~~~~~~~L~~~~~~-~~~~~lll~Gp~GtGKT~la~~~~~~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 10 RPALLEDILGQDEVVERLSRAVDS-PNLPHLLVQGPPGSGKTAAVRALARELYG-DPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred CCCcHHHhcCCHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHhcC-cccccceEEechhhhhhcchhhhhc
Confidence 456667899999999987766543 34456889999999999999998876321 1222 2344444321100 00000
Q ss_pred --HHHHHhccC----CCCCccHHHHHHHHHHHh--CCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecchh-
Q 003773 87 --AILEVLDKS----ASSLGEFQSLMQQTQESI--RGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDRS- 157 (796)
Q Consensus 87 --~i~~~l~~~----~~~~~~~~~~~~~~~~~l--~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~- 157 (796)
...+.++.. .......++..+...... .+.+-+||+||++.........+...+......+++|+|+....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 000000000 000011111111221111 23455899999965443334445555544445577888775432
Q ss_pred hhhcc-CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHH
Q 003773 158 VALQM-GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKV 218 (796)
Q Consensus 158 ~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 218 (796)
+...+ .....+++.+++.++..+++.+.+...+.. -..+.+..+++.++|.+-.+..
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~----~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD----YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 21111 223578889999999999998876433221 1245678889999887655433
No 52
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.3e-06 Score=90.79 Aligned_cols=208 Identities=13% Similarity=0.137 Sum_probs=127.8
Q ss_pred ccCcccccHHHHHHHhcc---cCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHH
Q 003773 13 LKLQIEGLDDDNTLALAS---SEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAIL 89 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~---~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 89 (796)
.|..+.+||++++++... ...+....-+.|+|..|+|||+.++.++++.+....=..+++|++....+..+++..|+
T Consensus 15 iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 15 IPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred CcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 455599999999954432 11122333488999999999999999999843221111288999999999999999999
Q ss_pred HHhccCCCCCccHHHHHHHHHHHhC--CceEEEEEeCCCCCCccChhhHhhhccCCCC-CcEEE--EEecchhhhhccCc
Q 003773 90 EVLDKSASSLGEFQSLMQQTQESIR--GKKFFLVLDDVWDGDFKKWDPFFSCLKNGHH-ESKIL--ITTRDRSVALQMGS 164 (796)
Q Consensus 90 ~~l~~~~~~~~~~~~~~~~~~~~l~--~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~-gs~ii--iTsr~~~~~~~~~~ 164 (796)
+.++..........+..+.+.+.+. ++.+++|||+++.-....-+.+...+..... .++|+ ..+-+......+..
T Consensus 95 ~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~ 174 (366)
T COG1474 95 NKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDP 174 (366)
T ss_pred HHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhh
Confidence 9998555555566667777777764 5789999999965322211334444333322 34433 34443332222211
Q ss_pred -------cceEEccCCChHhHHHHHHHHhhCC-CCCCCCcchhHHHHHHHHhcCC-CchhHHHHH
Q 003773 165 -------IDIISVKELGEEECWSLFKQVAFLG-RSFEDCEKLEPIGRKIACKCKG-LPLAAKVIG 220 (796)
Q Consensus 165 -------~~~~~l~~l~~~e~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~~~g-~PLal~~~~ 220 (796)
...+...|-+.+|-.+.+..++-.. .........-+.+..++..-+| --.||..+-
T Consensus 175 rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 175 RVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred hhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 2347788999999999888776322 1112233333444444444454 444554443
No 53
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=2.2e-07 Score=98.21 Aligned_cols=200 Identities=13% Similarity=0.077 Sum_probs=117.3
Q ss_pred hccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHH
Q 003773 8 WTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKA 87 (796)
Q Consensus 8 ~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 87 (796)
...|..-.++||.+..+..|......+.-...+.++|+.|+||||+|+.+++.......... ..+....+-..+...
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~sC~~i~~g 87 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTSCLEITKG 87 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcHHHHHHcc
Confidence 33477888999999998877665543333456889999999999999999886322111110 011111111122211
Q ss_pred HHHHhcc----CCCCCccHHHHHHHHHHH-hCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecc-hhhhhc
Q 003773 88 ILEVLDK----SASSLGEFQSLMQQTQES-IRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRD-RSVALQ 161 (796)
Q Consensus 88 i~~~l~~----~~~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~-~~~~~~ 161 (796)
....+.. ......++.++.+.+... ..++.-++|+|+++..+...+..+...+........+|++|.. ..+...
T Consensus 88 ~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~T 167 (484)
T PRK14956 88 ISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPET 167 (484)
T ss_pred CCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHH
Confidence 1111100 001112222333332221 2456679999999877777788887777654445555555544 333222
Q ss_pred c-CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCch
Q 003773 162 M-GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPL 214 (796)
Q Consensus 162 ~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 214 (796)
+ .....|.+.+++.++..+.+.+.+...+. .-..+....|++.++|.+.
T Consensus 168 I~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi----~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 168 ILSRCQDFIFKKVPLSVLQDYSEKLCKIENV----QYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HHhhhheeeecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCChHH
Confidence 2 22468999999999999988887643221 1124567889999999874
No 54
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.65 E-value=7.4e-07 Score=96.37 Aligned_cols=203 Identities=14% Similarity=0.123 Sum_probs=115.8
Q ss_pred hccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCe-EEEEEeCCcCCHHHHHH
Q 003773 8 WTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDI-VIWVCVSDAFEEIRIAK 86 (796)
Q Consensus 8 ~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~ 86 (796)
...|..-.++||.+..+..|......+.-.+.+.++|+.|+||||+|+.+++.......... -.+..+.....-..+..
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~ 93 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNN 93 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhc
Confidence 34577778899999999977655443444568899999999999999999876321111100 00000111000000000
Q ss_pred HHH---HHhcc-CCCCCccHHHHHHHHHH-HhCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEec-chhhhh
Q 003773 87 AIL---EVLDK-SASSLGEFQSLMQQTQE-SIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTR-DRSVAL 160 (796)
Q Consensus 87 ~i~---~~l~~-~~~~~~~~~~~~~~~~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr-~~~~~~ 160 (796)
... ..+.. +.....++.++++.... -+.+++-++|+|+++..+...+..+...+......+.+|++|. ...+..
T Consensus 94 ~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~ 173 (507)
T PRK06645 94 HNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPA 173 (507)
T ss_pred CCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhH
Confidence 000 00000 00111222222222211 1246677899999987666677888777776556666665553 333332
Q ss_pred cc-CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCch
Q 003773 161 QM-GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPL 214 (796)
Q Consensus 161 ~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 214 (796)
.+ .....+++.+++.++..+.+.+.+...+.. -..+.+..|++.++|.+-
T Consensus 174 tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~----ie~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 174 TIISRCQRYDLRRLSFEEIFKLLEYITKQENLK----TDIEALRIIAYKSEGSAR 224 (507)
T ss_pred HHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHH
Confidence 22 234689999999999999998887533321 124556779999998663
No 55
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=8.2e-07 Score=91.95 Aligned_cols=178 Identities=15% Similarity=0.130 Sum_probs=117.5
Q ss_pred CcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCc----cccccCCeEEEEEe-CCcCCHHHHHHHHH
Q 003773 15 LQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNE----GVKRKFDIVIWVCV-SDAFEEIRIAKAIL 89 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~----~~~~~f~~~~wv~~-~~~~~~~~~~~~i~ 89 (796)
++++|.+.-++.+......+.-.....++|+.|+||||+|+.+++.. ....++|...|... +.....+++. ++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir-~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIR-NII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHH-HHH
Confidence 57899998888887776555556788999999999999999988752 12345665555432 2222222221 222
Q ss_pred HHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecchhhh-hc-cCccce
Q 003773 90 EVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDRSVA-LQ-MGSIDI 167 (796)
Q Consensus 90 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~~~-~~-~~~~~~ 167 (796)
+.+... -..+++-++|+|+++..+...+..+...+.....++.+|++|.+.+.. .. ......
T Consensus 83 ~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~ 146 (313)
T PRK05564 83 EEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQI 146 (313)
T ss_pred HHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhcee
Confidence 222111 123567788888887766778888999888877888888888764322 11 122468
Q ss_pred EEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHH
Q 003773 168 ISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAK 217 (796)
Q Consensus 168 ~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 217 (796)
+++.+++.++....+.+... . ...+.+..++..++|.|.-+.
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~---~-----~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 147 YKLNRLSKEEIEKFISYKYN---D-----IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeCCCcCHHHHHHHHHHHhc---C-----CCHHHHHHHHHHcCCCHHHHH
Confidence 99999999999888866531 1 013346778999999886544
No 56
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.62 E-value=4.9e-07 Score=99.29 Aligned_cols=191 Identities=13% Similarity=0.137 Sum_probs=116.3
Q ss_pred hhhhhccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccc-----------------
Q 003773 4 VLEEWTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRK----------------- 66 (796)
Q Consensus 4 ~~~~~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~----------------- 66 (796)
|+-+...|..-+++||.+..++.|......+.-...+.++|+.|+||||+|+.+++.......
T Consensus 5 vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~ 84 (709)
T PRK08691 5 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDA 84 (709)
T ss_pred hHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhc
Confidence 334445578888999999999977766654444568899999999999999988875221111
Q ss_pred --CCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHH-HhCCceEEEEEeCCCCCCccChhhHhhhccCC
Q 003773 67 --FDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQE-SIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNG 143 (796)
Q Consensus 67 --f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~ 143 (796)
|--++.++....... .++.+++..... -..+++-++|+|+++..+......+...+...
T Consensus 85 g~~~DvlEidaAs~~gV------------------d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEP 146 (709)
T PRK08691 85 GRYVDLLEIDAASNTGI------------------DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEP 146 (709)
T ss_pred cCccceEEEeccccCCH------------------HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhC
Confidence 100112221111111 112222221111 12356678999999765544556677766654
Q ss_pred CCCcEEEEEecchh-hhhc-cCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhH
Q 003773 144 HHESKILITTRDRS-VALQ-MGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAA 216 (796)
Q Consensus 144 ~~gs~iiiTsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 216 (796)
...+++|++|.+.. +... ......+.+++++.++..+.+.+.+-..+.. -..+.+..|++.++|.+.-+
T Consensus 147 p~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~----id~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 147 PEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA----YEPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred CCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC----cCHHHHHHHHHHhCCCHHHH
Confidence 45667777776532 2111 1224578888999999999998877433321 12456788999999987443
No 57
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=9.7e-07 Score=96.05 Aligned_cols=195 Identities=16% Similarity=0.160 Sum_probs=120.5
Q ss_pred hhccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccc-------------------ccC
Q 003773 7 EWTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVK-------------------RKF 67 (796)
Q Consensus 7 ~~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-------------------~~f 67 (796)
+...|..-.++||.+..++.|......+.-...+.++|+.|+||||+|+.+++..... ..|
T Consensus 8 ~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~ 87 (546)
T PRK14957 8 RKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSF 87 (546)
T ss_pred HHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCC
Confidence 3444778889999999999777666544445678899999999999999988742110 012
Q ss_pred CeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHH-HhCCceEEEEEeCCCCCCccChhhHhhhccCCCCC
Q 003773 68 DIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQE-SIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHE 146 (796)
Q Consensus 68 ~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~g 146 (796)
.-+++++........ +..++.+.+.. -..+++-++|+|+++..+...++.+...+......
T Consensus 88 ~dlieidaas~~gvd------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~ 149 (546)
T PRK14957 88 IDLIEIDAASRTGVE------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEY 149 (546)
T ss_pred CceEEeecccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCC
Confidence 122333221111111 12222222221 12456779999999776666777788777766556
Q ss_pred cEEEEEecc-hhhhhc-cCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCc-hhHHHHHHHH
Q 003773 147 SKILITTRD-RSVALQ-MGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLP-LAAKVIGNLL 223 (796)
Q Consensus 147 s~iiiTsr~-~~~~~~-~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~~~~l 223 (796)
+++|++|.+ ..+... ......+++++++.++..+.+.+.+...+. ....+....|++.++|.+ -|+..+-.++
T Consensus 150 v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi----~~e~~Al~~Ia~~s~GdlR~alnlLek~i 225 (546)
T PRK14957 150 VKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI----NSDEQSLEYIAYHAKGSLRDALSLLDQAI 225 (546)
T ss_pred ceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 666655544 323222 123568999999999988888876533221 122445678999999955 4555554433
No 58
>PRK04195 replication factor C large subunit; Provisional
Probab=98.62 E-value=3.4e-06 Score=92.73 Aligned_cols=184 Identities=18% Similarity=0.154 Sum_probs=109.6
Q ss_pred cccccCcccccHHHHHHHhcccC---CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHH
Q 003773 10 TARLKLQIEGLDDDNTLALASSE---QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAK 86 (796)
Q Consensus 10 ~~~~~~~~vGr~~~~~~l~~~~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 86 (796)
.|..-.+++|+++.++.+..+.. .+...+.+.|+|++|+||||+|++++++. .|+ ++-++.+...+... ..
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~~~~-i~ 82 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRTADV-IE 82 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEcccccccHHH-HH
Confidence 46667789999999996665532 12236789999999999999999999873 233 33334443222222 22
Q ss_pred HHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCc----cChhhHhhhccCCCCCcEEEEEecchh-hhh-
Q 003773 87 AILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDF----KKWDPFFSCLKNGHHESKILITTRDRS-VAL- 160 (796)
Q Consensus 87 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~----~~~~~l~~~~~~~~~gs~iiiTsr~~~-~~~- 160 (796)
.++....... .....++-+||+|+++.... ..+..+...+.. .+..||+|+.+.. ...
T Consensus 83 ~~i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k 146 (482)
T PRK04195 83 RVAGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLR 146 (482)
T ss_pred HHHHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchh
Confidence 2222211100 01113678999999966322 224445544442 2344676665421 111
Q ss_pred cc-CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHH
Q 003773 161 QM-GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVI 219 (796)
Q Consensus 161 ~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 219 (796)
.+ .....+++.+++.++....+.+.+...+... ..+....|++.++|..-.+...
T Consensus 147 ~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i----~~eaL~~Ia~~s~GDlR~ain~ 202 (482)
T PRK04195 147 ELRNACLMIEFKRLSTRSIVPVLKRICRKEGIEC----DDEALKEIAERSGGDLRSAIND 202 (482)
T ss_pred hHhccceEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 11 2346889999999999998888775433222 2456788999999966554433
No 59
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.61 E-value=8.6e-07 Score=96.40 Aligned_cols=204 Identities=16% Similarity=0.172 Sum_probs=116.3
Q ss_pred hhccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHH
Q 003773 7 EWTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAK 86 (796)
Q Consensus 7 ~~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 86 (796)
+...|..-.+++|++..++.+..+...+.-.+.+.++|+.|+||||+|+.+++........+.. .++.. ..-+
T Consensus 8 ~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~---~Cg~C----~sCr 80 (605)
T PRK05896 8 RKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGD---CCNSC----SVCE 80 (605)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC---CCccc----HHHH
Confidence 3445888889999999999887766544445788899999999999999988763211111100 01110 0000
Q ss_pred HHHHH-------hccC-CCCCccHHHHHHHHHHH-hCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecc-h
Q 003773 87 AILEV-------LDKS-ASSLGEFQSLMQQTQES-IRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRD-R 156 (796)
Q Consensus 87 ~i~~~-------l~~~-~~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~-~ 156 (796)
.+... +... .....++.++...+... ..+++-++|+|+++..+...+..+...+......+.+|++|.. .
T Consensus 81 ~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~ 160 (605)
T PRK05896 81 SINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQ 160 (605)
T ss_pred HHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChH
Confidence 01000 0000 00111122222211111 1234557999999776556667777776655555666655543 2
Q ss_pred hhhhc-cCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCch-hHHHHHH
Q 003773 157 SVALQ-MGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPL-AAKVIGN 221 (796)
Q Consensus 157 ~~~~~-~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~~~ 221 (796)
.+... ......+++.+++.++....+.+.+...+.. -..+.+..+++.++|.+- |+..+-.
T Consensus 161 KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~----Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 161 KIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIK----IEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred hhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 23211 1234689999999999999888876432211 114557789999999654 4444443
No 60
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.60 E-value=8.3e-07 Score=83.08 Aligned_cols=187 Identities=18% Similarity=0.207 Sum_probs=97.4
Q ss_pred hhhhccccccCcccccHHHHHH---Hhccc-CCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCC
Q 003773 5 LEEWTTARLKLQIEGLDDDNTL---ALASS-EQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFE 80 (796)
Q Consensus 5 ~~~~~~~~~~~~~vGr~~~~~~---l~~~~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 80 (796)
....--|..-++|||.+.-++. ++++. ..++...-+.+||++|+||||||..+++. ....|. +.+...-..
T Consensus 14 l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~~i~k 88 (233)
T PF05496_consen 14 LAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGPAIEK 88 (233)
T ss_dssp HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECCC--S
T ss_pred hHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccchhhhh
Confidence 3344456777899999999983 23332 22345677889999999999999999987 333332 222211011
Q ss_pred HHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCC--------CCC------
Q 003773 81 EIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNG--------HHE------ 146 (796)
Q Consensus 81 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~--------~~g------ 146 (796)
..++ + ..+. .+ +++-++++|++..-....-+.+.+...++ +++
T Consensus 89 ~~dl----~-----------------~il~-~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~ 145 (233)
T PF05496_consen 89 AGDL----A-----------------AILT-NL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRI 145 (233)
T ss_dssp CHHH----H-----------------HHHH-T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEE
T ss_pred HHHH----H-----------------HHHH-hc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeec
Confidence 1111 1 1111 12 23457778998664443444444443322 111
Q ss_pred -----cEEEEEecchhhhhccCc-cc-eEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHH
Q 003773 147 -----SKILITTRDRSVALQMGS-ID-IISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVI 219 (796)
Q Consensus 147 -----s~iiiTsr~~~~~~~~~~-~~-~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 219 (796)
+-|=.|||.--+...+.. .. ..+++..+.+|-.+...+.+..-. -.-.++.+.+|++.+.|-|--..-+
T Consensus 146 ~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~----i~i~~~~~~~Ia~rsrGtPRiAnrl 221 (233)
T PF05496_consen 146 NLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN----IEIDEDAAEEIARRSRGTPRIANRL 221 (233)
T ss_dssp E----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHH
T ss_pred cCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC----CCcCHHHHHHHHHhcCCChHHHHHH
Confidence 223347776444333322 22 457999999999999987763222 2333677999999999999655544
Q ss_pred HHHH
Q 003773 220 GNLL 223 (796)
Q Consensus 220 ~~~l 223 (796)
-+.+
T Consensus 222 l~rv 225 (233)
T PF05496_consen 222 LRRV 225 (233)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 61
>PLN03025 replication factor C subunit; Provisional
Probab=98.60 E-value=6.4e-07 Score=92.97 Aligned_cols=186 Identities=12% Similarity=0.057 Sum_probs=109.4
Q ss_pred ccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCC-eEEEEEeCCcCCHHHHHHH
Q 003773 9 TTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFD-IVIWVCVSDAFEEIRIAKA 87 (796)
Q Consensus 9 ~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~ 87 (796)
..|..-.+++|.++.++.|..... .+..+-+.++|++|+||||+|+.+++... ...|. .++-+..+...+... .+.
T Consensus 7 yrP~~l~~~~g~~~~~~~L~~~~~-~~~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~~-vr~ 83 (319)
T PLN03025 7 YRPTKLDDIVGNEDAVSRLQVIAR-DGNMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGIDV-VRN 83 (319)
T ss_pred cCCCCHHHhcCcHHHHHHHHHHHh-cCCCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHHH-HHH
Confidence 346667789999998887665443 23444577999999999999999887631 11222 122222222222221 112
Q ss_pred HHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecch-hhhhcc-Ccc
Q 003773 88 ILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDR-SVALQM-GSI 165 (796)
Q Consensus 88 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~-~~~~~~-~~~ 165 (796)
+.+.+...... .-.++.-++++|+++.........+...+......+++|+++... .+...+ ...
T Consensus 84 ~i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 84 KIKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred HHHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 11111100000 002456789999997765555555665555545567777777542 221111 123
Q ss_pred ceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCch
Q 003773 166 DIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPL 214 (796)
Q Consensus 166 ~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 214 (796)
..+++++++.++..+.+.+.+...+... ..+....|++.++|..-
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~egi~i----~~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAEKVPY----VPEGLEAIIFTADGDMR 195 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHH
Confidence 5799999999999999888774332211 14557889999998653
No 62
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.59 E-value=6.9e-08 Score=92.18 Aligned_cols=49 Identities=22% Similarity=0.228 Sum_probs=32.5
Q ss_pred cccccHHHHHHHhccc--CCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccc
Q 003773 16 QIEGLDDDNTLALASS--EQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVK 64 (796)
Q Consensus 16 ~~vGr~~~~~~l~~~~--~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 64 (796)
+||||+++++++...+ ......+.+.|+|++|+|||+++++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 5899999999777665 445567899999999999999999998884433
No 63
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=1e-06 Score=94.40 Aligned_cols=187 Identities=16% Similarity=0.090 Sum_probs=117.5
Q ss_pred hccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccc-------------------ccCC
Q 003773 8 WTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVK-------------------RKFD 68 (796)
Q Consensus 8 ~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-------------------~~f~ 68 (796)
...|..-.++||.+..++.|......+.-.+.+.++|+.|+||||+|+.+++..-.. ..+.
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~ 85 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHP 85 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCC
Confidence 344778889999999998776655434445688999999999999999887631100 1111
Q ss_pred eEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcE
Q 003773 69 IVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESK 148 (796)
Q Consensus 69 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~ 148 (796)
-++.++.+...+..++. ++.+..... -..++.-++|+|+++..+....+.+...+....+.++
T Consensus 86 Dv~eidaas~~~vddIR-~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~ 148 (491)
T PRK14964 86 DVIEIDAASNTSVDDIK-VILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVK 148 (491)
T ss_pred CEEEEecccCCCHHHHH-HHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeE
Confidence 23444443333332221 122111100 0235667899999976666667777777776666777
Q ss_pred EEEEecc-hhhhhcc-CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchh
Q 003773 149 ILITTRD-RSVALQM-GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLA 215 (796)
Q Consensus 149 iiiTsr~-~~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 215 (796)
+|++|.. ..+...+ .....+++.+++.++..+.+.+.+...+.. -.++.+..|++.++|.+-.
T Consensus 149 fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~----i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 149 FILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE----HDEESLKLIAENSSGSMRN 213 (491)
T ss_pred EEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHH
Confidence 7776654 3332222 235689999999999999998877543321 1245577899999987643
No 64
>PF13173 AAA_14: AAA domain
Probab=98.59 E-value=2.5e-07 Score=81.75 Aligned_cols=119 Identities=22% Similarity=0.313 Sum_probs=78.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCce
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKK 117 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 117 (796)
+++.|.|+.|+||||++++++++.. ....++++++...........+ ..+.+.+....++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD-----------------LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh-----------------hHHHHHHhhccCC
Confidence 6899999999999999999987632 3355777776653221110000 1222333334478
Q ss_pred EEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecchhhhhc-----c-CccceEEccCCChHhH
Q 003773 118 FFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDRSVALQ-----M-GSIDIISVKELGEEEC 178 (796)
Q Consensus 118 ~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~~~~~-----~-~~~~~~~l~~l~~~e~ 178 (796)
.++++|++.. ...|......+.+..+..+|++|+........ . +....+++.||+..|.
T Consensus 63 ~~i~iDEiq~--~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQY--LPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhh--hccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 8899999944 46788777777766667889999987554422 1 2245788999988764
No 65
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.57 E-value=3.1e-08 Score=107.10 Aligned_cols=182 Identities=34% Similarity=0.393 Sum_probs=128.7
Q ss_pred hcCcccceeeecccccCCCcccccccccccccCcc-ccceEecCCCCccccchhhhccCCccEeeccccccccccchhhc
Q 003773 423 SKVACLRALVIRQWFVPLDDQNFIREIPENIGKLI-HLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIG 501 (796)
Q Consensus 423 ~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~-~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~ 501 (796)
..+..+..|++. ++.+.++|...+.+. +|++|++++|.+..+|..+.++++|+.|++++|. +..+|...+
T Consensus 113 ~~~~~l~~L~l~--------~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~ 183 (394)
T COG4886 113 LELTNLTSLDLD--------NNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLS 183 (394)
T ss_pred hcccceeEEecC--------CcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhh
Confidence 445789999998 888999999888885 9999999999999998889999999999999987 888888777
Q ss_pred cccCCCeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhccc
Q 003773 502 KLMNMRSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQL 581 (796)
Q Consensus 502 ~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l 581 (796)
.+++|+.|++++| .+..+|..++.+..|++|.. ..+.. ...+..+.++.
T Consensus 184 ~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~--~~N~~----~~~~~~~~~~~------------------------ 232 (394)
T COG4886 184 NLSNLNNLDLSGN-KISDLPPEIELLSALEELDL--SNNSI----IELLSSLSNLK------------------------ 232 (394)
T ss_pred hhhhhhheeccCC-ccccCchhhhhhhhhhhhhh--cCCcc----eecchhhhhcc------------------------
Confidence 9999999999999 78888887777777888862 22211 11111122222
Q ss_pred cccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCCC
Q 003773 582 YNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCEH 661 (796)
Q Consensus 582 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~ 661 (796)
++..+.+..+.+ ..++..+..+++++.|+++++.+..++. ++.+.+|+.|+++++.....
T Consensus 233 ----~l~~l~l~~n~~---------------~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 233 ----NLSGLELSNNKL---------------EDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ----cccccccCCcee---------------eeccchhccccccceecccccccccccc-ccccCccCEEeccCcccccc
Confidence 222222222221 0112233445567777777777777666 77788888888888866555
Q ss_pred CCc
Q 003773 662 LPP 664 (796)
Q Consensus 662 lp~ 664 (796)
+|.
T Consensus 293 ~~~ 295 (394)
T COG4886 293 LPL 295 (394)
T ss_pred chh
Confidence 444
No 66
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.57 E-value=1.9e-06 Score=90.24 Aligned_cols=186 Identities=13% Similarity=0.021 Sum_probs=108.3
Q ss_pred cccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCe-EEEEEeCCcCCHHHHHHHH
Q 003773 10 TARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDI-VIWVCVSDAFEEIRIAKAI 88 (796)
Q Consensus 10 ~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i 88 (796)
.|..-.+++|+++.++.+...... +..+.+.|+|+.|+||||+|+.+++..... .+.. .+-+..+.......+...+
T Consensus 12 rP~~~~~~~g~~~~~~~l~~~i~~-~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~-~~~~~~i~~~~~~~~~~~~~~~~i 89 (319)
T PRK00440 12 RPRTLDEIVGQEEIVERLKSYVKE-KNMPHLLFAGPPGTGKTTAALALARELYGE-DWRENFLELNASDERGIDVIRNKI 89 (319)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHHcCC-ccccceEEeccccccchHHHHHHH
Confidence 455567799999999877766543 334457999999999999999998763211 1211 1212222221211111111
Q ss_pred HHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecch-hhhhcc-Cccc
Q 003773 89 LEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDR-SVALQM-GSID 166 (796)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~-~~~~~~-~~~~ 166 (796)
.+..... + .....+-++++|+++.........+...+......+++|+++... .+.... ....
T Consensus 90 ~~~~~~~-~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~ 154 (319)
T PRK00440 90 KEFARTA-P--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCA 154 (319)
T ss_pred HHHHhcC-C--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhh
Confidence 1111000 0 011346689999986544444455666555555567777777532 111111 1234
Q ss_pred eEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhH
Q 003773 167 IISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAA 216 (796)
Q Consensus 167 ~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 216 (796)
.+++.+++.++....+...+...+.. -.++.+..+++.++|.+.-+
T Consensus 155 ~~~~~~l~~~ei~~~l~~~~~~~~~~----i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 155 VFRFSPLKKEAVAERLRYIAENEGIE----ITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 78999999999988888877433221 12456788999999987553
No 67
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.57 E-value=2.7e-07 Score=88.91 Aligned_cols=187 Identities=14% Similarity=0.086 Sum_probs=117.7
Q ss_pred cccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCe-EEEEEeCCcCCHHHHHHHH
Q 003773 10 TARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDI-VIWVCVSDAFEEIRIAKAI 88 (796)
Q Consensus 10 ~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i 88 (796)
.|...++++|.+..++.|..++.. ...+....+|++|.|||+-|.+++...--...|.+ ++-.+++......-+-..+
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~-~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Ki 109 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR-RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKI 109 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh-cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhh
Confidence 466778899999999988877654 56778899999999999999888876333345533 3333444332211111100
Q ss_pred HHHhccCCCCCccHHHHHHHHHHHh--CCce-EEEEEeCCCCCCccChhhHhhhccCCCCCcEEEE-Eecchhhhhcc-C
Q 003773 89 LEVLDKSASSLGEFQSLMQQTQESI--RGKK-FFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILI-TTRDRSVALQM-G 163 (796)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~~~~~~~l--~~~~-~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iii-Tsr~~~~~~~~-~ 163 (796)
. +.........+.. .-++ -+||||+++....+.|..+...+......++.|+ |+--..+...+ .
T Consensus 110 k-----------~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 110 K-----------NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred c-----------CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 0 0000000000000 0123 4788999999889999999999888776677554 44333332222 1
Q ss_pred ccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCC
Q 003773 164 SIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGL 212 (796)
Q Consensus 164 ~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 212 (796)
....+..++|..++...-++..+-.++...+ .+..+.|++.++|-
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d----~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVDID----DDALKLIAKISDGD 223 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCc
Confidence 2467889999999999988888754443322 45577899999884
No 68
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.56 E-value=2.4e-06 Score=90.90 Aligned_cols=189 Identities=13% Similarity=0.097 Sum_probs=114.5
Q ss_pred ccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccc--------------------ccCC
Q 003773 9 TTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVK--------------------RKFD 68 (796)
Q Consensus 9 ~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--------------------~~f~ 68 (796)
..|..-.+++|.++.++.+......+.-...+.++|++|+||||+|+.++...... .+++
T Consensus 8 ~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~ 87 (355)
T TIGR02397 8 YRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD 87 (355)
T ss_pred hCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 34566778999999999877666544445678899999999999998887652111 1222
Q ss_pred eEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcE
Q 003773 69 IVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESK 148 (796)
Q Consensus 69 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~ 148 (796)
++++.......... .+++.+.+... -..+++-++|+|+++.........+...+......+.
T Consensus 88 -~~~~~~~~~~~~~~-~~~l~~~~~~~----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 88 -VIEIDAASNNGVDD-IREILDNVKYA----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred -EEEeeccccCCHHH-HHHHHHHHhcC----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 22332221111111 11222221110 1234566889999966544556667666655555666
Q ss_pred EEEEecchh-hhhcc-CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHH
Q 003773 149 ILITTRDRS-VALQM-GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVI 219 (796)
Q Consensus 149 iiiTsr~~~-~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 219 (796)
+|++|.+.. +...+ .....+++.+++.++..+.+...+...+.. -.++.+..+++.++|.|..+...
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~----i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK----IEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCChHHHHHH
Confidence 677765533 22211 224578899999999999888876433221 11456788899999988655443
No 69
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.55 E-value=1.3e-06 Score=96.64 Aligned_cols=201 Identities=14% Similarity=0.144 Sum_probs=119.0
Q ss_pred hhhccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHH
Q 003773 6 EEWTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIA 85 (796)
Q Consensus 6 ~~~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 85 (796)
.+...|..-.++||.+.-++.|......+.-...+.++|+.|+||||+|+.+++..-....+.. -.+... ..-
T Consensus 7 a~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~---~pCg~C----~~C 79 (647)
T PRK07994 7 ARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA---TPCGEC----DNC 79 (647)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC---CCCCCC----HHH
Confidence 3444578888999999999977766554444466789999999999999999876322111100 001110 000
Q ss_pred HHHHH-------HhccC-CCCCccHHHHHHHHHHH-hCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecch
Q 003773 86 KAILE-------VLDKS-ASSLGEFQSLMQQTQES-IRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDR 156 (796)
Q Consensus 86 ~~i~~-------~l~~~-~~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~ 156 (796)
+.|.. .+... .....++.++.+.+... ..+++-++|+|+++..+......+...+.......++|++|.+.
T Consensus 80 ~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~ 159 (647)
T PRK07994 80 REIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 (647)
T ss_pred HHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCc
Confidence 01100 00000 01111222222222211 24677799999998777677778888777665566666666553
Q ss_pred -hhhhc-cCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHH
Q 003773 157 -SVALQ-MGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAK 217 (796)
Q Consensus 157 -~~~~~-~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 217 (796)
.+... ......+.+++++.++..+.+.+.+-..+. ....+....|++.++|.+-.+.
T Consensus 160 ~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i----~~e~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 160 QKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI----PFEPRALQLLARAADGSMRDAL 218 (647)
T ss_pred cccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 33211 122578999999999999999877632221 1124556789999999775433
No 70
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=1.6e-06 Score=95.71 Aligned_cols=209 Identities=15% Similarity=0.113 Sum_probs=117.0
Q ss_pred hhhhhccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccC--CeEEEEEeCCcCCH
Q 003773 4 VLEEWTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKF--DIVIWVCVSDAFEE 81 (796)
Q Consensus 4 ~~~~~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~ 81 (796)
|.-+...|..-+++||.+.-++.|......+.-...+.++|+.|+||||+|+.+++..-..... .....-.++...+=
T Consensus 5 vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C 84 (618)
T PRK14951 5 VLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQAC 84 (618)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHH
Confidence 3445555888889999999888777666545455788999999999999999887652111100 00000011111000
Q ss_pred HHHHHHH-HHHhccCCCCCccHHHHHHHHHHH----hCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecc-
Q 003773 82 IRIAKAI-LEVLDKSASSLGEFQSLMQQTQES----IRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRD- 155 (796)
Q Consensus 82 ~~~~~~i-~~~l~~~~~~~~~~~~~~~~~~~~----l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~- 155 (796)
..+...- .+.+.........+++..+.+... ..++.-++|+|+++..+...+..+...+......+++|++|.+
T Consensus 85 ~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~ 164 (618)
T PRK14951 85 RDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDP 164 (618)
T ss_pred HHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCc
Confidence 0000000 000000000011122221111110 1245568999999877766777777777665556667666644
Q ss_pred hhhhhc-cCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhH
Q 003773 156 RSVALQ-MGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAA 216 (796)
Q Consensus 156 ~~~~~~-~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 216 (796)
..+... ......+++++++.++..+.+.+.+...+.. -..+....|++.++|.+-.+
T Consensus 165 ~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~----ie~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 165 QKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP----AEPQALRLLARAARGSMRDA 222 (618)
T ss_pred hhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 222211 2235689999999999999998876433221 12445778889999866443
No 71
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=1.2e-06 Score=90.88 Aligned_cols=202 Identities=13% Similarity=0.117 Sum_probs=120.1
Q ss_pred ccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc--cCCeEEEEEeCCcCCHHHHHH
Q 003773 9 TTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKR--KFDIVIWVCVSDAFEEIRIAK 86 (796)
Q Consensus 9 ~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~f~~~~wv~~~~~~~~~~~~~ 86 (796)
+.|...++++|.++..+.+......+.-...+.|+|+.|+||||+|..+++..-... .+.... .......-...+
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~ 93 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWR 93 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHH
Confidence 456677889999999998887766555566899999999999999998887632211 011110 000111111222
Q ss_pred HHHHH-------hccC--C-----CCCccHHHHHHHHHHHh-----CCceEEEEEeCCCCCCccChhhHhhhccCCCCCc
Q 003773 87 AILEV-------LDKS--A-----SSLGEFQSLMQQTQESI-----RGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHES 147 (796)
Q Consensus 87 ~i~~~-------l~~~--~-----~~~~~~~~~~~~~~~~l-----~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs 147 (796)
.+... +... . .....+++. +.+.+.+ .+++-++|+|+++..+......+...+.......
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 22211 1000 0 011123333 2333333 3567799999998776666677777776644455
Q ss_pred EEEEEecc-hhhhhcc-CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHH
Q 003773 148 KILITTRD-RSVALQM-GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIG 220 (796)
Q Consensus 148 ~iiiTsr~-~~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 220 (796)
.+|++|.. ..+.... .....+.+.+++.++..+++.+.... . . ...+.+..+++.++|.|.....+.
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~--~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-Q--G---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-c--C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55555543 3332211 22469999999999999999874311 1 1 113446789999999998655443
No 72
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.51 E-value=5.8e-07 Score=82.28 Aligned_cols=125 Identities=18% Similarity=0.142 Sum_probs=71.4
Q ss_pred cccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCC
Q 003773 18 EGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSAS 97 (796)
Q Consensus 18 vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 97 (796)
+||++.++.+...... ...+.+.|+|++|+|||++|+++++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~-~~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALEL-PPPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 4788888877665432 2456888999999999999999998732 222346677665433322211111100
Q ss_pred CCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCC------CCCcEEEEEecchh
Q 003773 98 SLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNG------HHESKILITTRDRS 157 (796)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~------~~gs~iiiTsr~~~ 157 (796)
............++.++++||++.........+...+... ..+.+||+|+....
T Consensus 72 ------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999753222223333333322 35678888887643
No 73
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.50 E-value=2.9e-06 Score=94.00 Aligned_cols=207 Identities=13% Similarity=0.097 Sum_probs=120.2
Q ss_pred hhhhhccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCC--eEEEEEeCCcCCH
Q 003773 4 VLEEWTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFD--IVIWVCVSDAFEE 81 (796)
Q Consensus 4 ~~~~~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~ 81 (796)
|..+.+.|..-.++||.+..++.|......+.-...+.++|+.|+||||+|+.+++......... ...+-.+.....-
T Consensus 13 ~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C 92 (598)
T PRK09111 13 VLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHC 92 (598)
T ss_pred hHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHH
Confidence 34455667788899999999998777665444456788999999999999999988632211110 0000011110000
Q ss_pred HHHHHHHHHHhc--------cCCCCCccHHHHHHHHHHH-hCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEE
Q 003773 82 IRIAKAILEVLD--------KSASSLGEFQSLMQQTQES-IRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILIT 152 (796)
Q Consensus 82 ~~~~~~i~~~l~--------~~~~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiT 152 (796)
+.|...-. .+.....++.+++..+... ..+++-++|+|+++..+....+.+...+..-...+++|++
T Consensus 93 ----~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~ 168 (598)
T PRK09111 93 ----QAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFA 168 (598)
T ss_pred ----HHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEE
Confidence 11111000 0001112222222222111 2345668999999766555667777777665566777766
Q ss_pred ecc-hhhhhcc-CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHH
Q 003773 153 TRD-RSVALQM-GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKV 218 (796)
Q Consensus 153 sr~-~~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 218 (796)
|.. ..+...+ .....+++..++.++....+.+.+...+.. -..+.+..|++.++|.+.-+..
T Consensus 169 tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~----i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 169 TTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE----VEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred eCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 643 3322222 234689999999999999998876433221 1235678889999998754433
No 74
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=2.5e-06 Score=93.82 Aligned_cols=196 Identities=15% Similarity=0.131 Sum_probs=117.4
Q ss_pred hhhccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc-------------------c
Q 003773 6 EEWTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKR-------------------K 66 (796)
Q Consensus 6 ~~~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~ 66 (796)
-+...|..-.++||.+.-++.|......+.-...+.++|+.|+||||+|+.+++...... .
T Consensus 7 ~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~ 86 (527)
T PRK14969 7 ARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGR 86 (527)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCC
Confidence 344447788899999999997776655444456778999999999999999887631111 1
Q ss_pred CCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCCCC
Q 003773 67 FDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHE 146 (796)
Q Consensus 67 f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~g 146 (796)
|.-+++++.+.......+ +++.+.... .-..+++-++|+|+++..+......+...+......
T Consensus 87 ~~d~~ei~~~~~~~vd~i-r~l~~~~~~----------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~ 149 (527)
T PRK14969 87 FVDLIEVDAASNTQVDAM-RELLDNAQY----------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (527)
T ss_pred CCceeEeeccccCCHHHH-HHHHHHHhh----------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence 111222222211111111 111111110 011356779999999776655667777777665556
Q ss_pred cEEEEEecch-hhhhc-cCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCch-hHHHHHHH
Q 003773 147 SKILITTRDR-SVALQ-MGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPL-AAKVIGNL 222 (796)
Q Consensus 147 s~iiiTsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~~~~ 222 (796)
+.+|++|.+. .+... ......+++++++.++..+.+.+.+...+. ....+.+..|++.++|.+- |+..+-..
T Consensus 150 ~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi----~~~~~al~~la~~s~Gslr~al~lldqa 224 (527)
T PRK14969 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI----PFDATALQLLARAAAGSMRDALSLLDQA 224 (527)
T ss_pred EEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 6677666543 22211 112468899999999999888876643221 1124456788999999774 44444333
No 75
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=2.4e-06 Score=93.23 Aligned_cols=191 Identities=13% Similarity=0.086 Sum_probs=117.2
Q ss_pred hhhhccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccc------------------
Q 003773 5 LEEWTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRK------------------ 66 (796)
Q Consensus 5 ~~~~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~------------------ 66 (796)
.-+...|..-.++||.+.-++.|......+.-...+.++|+.|+||||+|+.+++..-....
T Consensus 6 l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g 85 (509)
T PRK14958 6 LARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEG 85 (509)
T ss_pred HHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcC
Confidence 34445588888999999999988776654444567889999999999999988876321111
Q ss_pred -CCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCCC
Q 003773 67 -FDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHH 145 (796)
Q Consensus 67 -f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~ 145 (796)
|.-++.++.......+++ +++.+.+.. .-..++.-++|+|+++..+......+...+.....
T Consensus 86 ~~~d~~eidaas~~~v~~i-R~l~~~~~~----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~ 148 (509)
T PRK14958 86 RFPDLFEVDAASRTKVEDT-RELLDNIPY----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPS 148 (509)
T ss_pred CCceEEEEcccccCCHHHH-HHHHHHHhh----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCC
Confidence 111333332222222221 112111110 01135666899999977666677777777766656
Q ss_pred CcEEEEEecch-hhhhcc-CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhH
Q 003773 146 ESKILITTRDR-SVALQM-GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAA 216 (796)
Q Consensus 146 gs~iiiTsr~~-~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 216 (796)
.+++|++|.+. .+...+ .....+++++++.++..+.+.+.+...+.. -..+....|++.++|.+..+
T Consensus 149 ~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~----~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 149 HVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE----FENAALDLLARAANGSVRDA 217 (509)
T ss_pred CeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCcHHHH
Confidence 67777766543 222111 224578899999998888777666432221 12345677888999877433
No 76
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.47 E-value=3.9e-06 Score=85.73 Aligned_cols=228 Identities=14% Similarity=0.118 Sum_probs=135.7
Q ss_pred hhhccccccCcccccHHHHHHHh---cccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHH
Q 003773 6 EEWTTARLKLQIEGLDDDNTLAL---ASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEI 82 (796)
Q Consensus 6 ~~~~~~~~~~~~vGr~~~~~~l~---~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 82 (796)
+.......+..++||+.|+..+- ...-.....+.+.|.|.+|.|||.+...++.+......=-.++++.+..-....
T Consensus 141 ~~l~~t~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 141 ESLLNTAPPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred HHHHhcCCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 33445567888999999999332 222234566899999999999999999898873222111245788887767888
Q ss_pred HHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCc--eEEEEEeCCCCCCccChhhHhhhccCC-CCCcEEEEEecch--h
Q 003773 83 RIAKAILEVLDKSASSLGEFQSLMQQTQESIRGK--KFFLVLDDVWDGDFKKWDPFFSCLKNG-HHESKILITTRDR--S 157 (796)
Q Consensus 83 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~--~~LlvlDd~~~~~~~~~~~l~~~~~~~-~~gs~iiiTsr~~--~ 157 (796)
+++..|...+...........+....+.+...+. .+++|+|..+.-....-..+...|.|. -+++|+|+.---. +
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslD 300 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLD 300 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhh
Confidence 9999999887332222222244455555555444 589999998653333334444444442 3566666532211 1
Q ss_pred hhh----cc-----CccceEEccCCChHhHHHHHHHHhhCCCCC-CCCcchhHHHHHHHHhcCCCchhHHHHHHHHhcCC
Q 003773 158 VAL----QM-----GSIDIISVKELGEEECWSLFKQVAFLGRSF-EDCEKLEPIGRKIACKCKGLPLAAKVIGNLLRSKR 227 (796)
Q Consensus 158 ~~~----~~-----~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~ 227 (796)
..+ .+ -....+..+|.+.++..++|..+....... .....++-.|++++...|-+--|+.+.-+.+.=
T Consensus 301 lTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI-- 378 (529)
T KOG2227|consen 301 LTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEI-- 378 (529)
T ss_pred HHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHH--
Confidence 100 01 113477788999999999999887433221 112234444555555555566666666554421
Q ss_pred CHHHHHHH
Q 003773 228 TVSEWQRI 235 (796)
Q Consensus 228 ~~~~w~~~ 235 (796)
-..+|+..
T Consensus 379 ~E~e~r~~ 386 (529)
T KOG2227|consen 379 AEIEKRKI 386 (529)
T ss_pred HHHHHhhc
Confidence 23455554
No 77
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=2.6e-06 Score=90.95 Aligned_cols=211 Identities=14% Similarity=0.106 Sum_probs=118.0
Q ss_pred hhhhhccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEE-----EEEeCCc
Q 003773 4 VLEEWTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVI-----WVCVSDA 78 (796)
Q Consensus 4 ~~~~~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~-----wv~~~~~ 78 (796)
|.-+...|..-.+++|.+..++.|......+.-...+.++|+.|+||||+|+.+++.......++... +-.++..
T Consensus 5 ~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c 84 (397)
T PRK14955 5 VIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGEC 84 (397)
T ss_pred HHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCC
Confidence 34455567888899999998887766655444445688999999999999999887632211111000 0011111
Q ss_pred CCHHHHHHHHHHHh-ccCCCCCccHHHHHHHHHHHh-----CCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEE
Q 003773 79 FEEIRIAKAILEVL-DKSASSLGEFQSLMQQTQESI-----RGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILIT 152 (796)
Q Consensus 79 ~~~~~~~~~i~~~l-~~~~~~~~~~~~~~~~~~~~l-----~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiT 152 (796)
.+-..+.....-.+ ..........+++.+ +.+.+ .+++-++|+|+++......++.+...+....+.+.+|++
T Consensus 85 ~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~ 163 (397)
T PRK14955 85 ESCRDFDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFA 163 (397)
T ss_pred HHHHHHhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 00000000000000 000001111222222 12222 356678899999766555677787777766566776666
Q ss_pred ecc-hhhhhcc-CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCch-hHHHH
Q 003773 153 TRD-RSVALQM-GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPL-AAKVI 219 (796)
Q Consensus 153 sr~-~~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~ 219 (796)
+.. ..+...+ .....+++.+++.++..+.+...+-..+. .-..+.+..+++.++|.+- |+..+
T Consensus 164 t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~----~i~~~al~~l~~~s~g~lr~a~~~L 229 (397)
T PRK14955 164 TTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI----SVDADALQLIGRKAQGSMRDAQSIL 229 (397)
T ss_pred eCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 543 3332221 12357889999999998888877632221 1225567889999999774 44433
No 78
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=4.5e-06 Score=87.07 Aligned_cols=197 Identities=13% Similarity=0.082 Sum_probs=118.4
Q ss_pred ccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccC--C------eEEEEEeCCcCC
Q 003773 9 TTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKF--D------IVIWVCVSDAFE 80 (796)
Q Consensus 9 ~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f--~------~~~wv~~~~~~~ 80 (796)
..|....++||.++..+.|......+.-...+.++|+.|+||+++|..+++..--.... . ...-+ +...
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~-~~~c-- 89 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI-DPDH-- 89 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC-CCCC--
Confidence 45666778999999999887766545456689999999999999998887753211110 0 00000 0000
Q ss_pred HHHHHHHHHHHh-------cc---CC----CCCccHHHHHHHHHHHh-----CCceEEEEEeCCCCCCccChhhHhhhcc
Q 003773 81 EIRIAKAILEVL-------DK---SA----SSLGEFQSLMQQTQESI-----RGKKFFLVLDDVWDGDFKKWDPFFSCLK 141 (796)
Q Consensus 81 ~~~~~~~i~~~l-------~~---~~----~~~~~~~~~~~~~~~~l-----~~~~~LlvlDd~~~~~~~~~~~l~~~~~ 141 (796)
..-+.+...- .. .. .....+++ ++.+.+.+ .+.+.++|+|+++..+......+...+.
T Consensus 90 --~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LE 166 (365)
T PRK07471 90 --PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLE 166 (365)
T ss_pred --hHHHHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHh
Confidence 0111111000 00 00 01112333 23333333 2567799999998877777777887777
Q ss_pred CCCCCcEEEEEecchh-hhhc-cCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHH
Q 003773 142 NGHHESKILITTRDRS-VALQ-MGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVI 219 (796)
Q Consensus 142 ~~~~gs~iiiTsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 219 (796)
....++.+|++|...+ +... ......+.+.+++.++..+++.+... . . . .+....+++.++|.|.....+
T Consensus 167 epp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~---~--~--~-~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 167 EPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGP---D--L--P-DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred cCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcc---c--C--C-HHHHHHHHHHcCCCHHHHHHH
Confidence 6656677777777643 2211 12356899999999999999987541 1 0 1 122367899999999865544
No 79
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.46 E-value=1.6e-06 Score=98.10 Aligned_cols=176 Identities=18% Similarity=0.238 Sum_probs=98.6
Q ss_pred ccccCcccccHHHHH---HHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHH
Q 003773 11 ARLKLQIEGLDDDNT---LALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKA 87 (796)
Q Consensus 11 ~~~~~~~vGr~~~~~---~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 87 (796)
|..-++|||++..+. .+..... .+....+.++|++|+||||+|+.+++. ....|. .+.... ...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~-~~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i------ 90 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIK-ADRVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGV------ 90 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHh-cCCCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhh------
Confidence 555667999999885 2332222 345567789999999999999999986 334441 111110 000
Q ss_pred HHHHhccCCCCCccHHHHHHHHHHHh--CCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEE--ecch--hhhhc
Q 003773 88 ILEVLDKSASSLGEFQSLMQQTQESI--RGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILIT--TRDR--SVALQ 161 (796)
Q Consensus 88 i~~~l~~~~~~~~~~~~~~~~~~~~l--~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiT--sr~~--~~~~~ 161 (796)
.+..+.+....+.+ .+++.++|+||++.-.....+.+...+. .|+.++|+ |.+. .+...
T Consensus 91 ------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~a 155 (725)
T PRK13341 91 ------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKA 155 (725)
T ss_pred ------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhH
Confidence 01111222222211 2467799999997654444555554333 34445553 3332 11111
Q ss_pred c-CccceEEccCCChHhHHHHHHHHhhCCCC---CCCCcchhHHHHHHHHhcCCCch
Q 003773 162 M-GSIDIISVKELGEEECWSLFKQVAFLGRS---FEDCEKLEPIGRKIACKCKGLPL 214 (796)
Q Consensus 162 ~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~---~~~~~~~~~~~~~i~~~~~g~PL 214 (796)
. .....+.+++++.++...++.+.+..... .....-.++....|++.+.|..-
T Consensus 156 L~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 156 LVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 1 12457999999999999998876531000 00111224567788888888643
No 80
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.45 E-value=2.4e-07 Score=93.56 Aligned_cols=270 Identities=21% Similarity=0.213 Sum_probs=177.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCccccccC-CeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHh
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKF-DIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESI 113 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 113 (796)
...|-+.++|.|||||||++-.+.. .+..| +.+.++.+....+...+.-.+...++..... .+..+..+....
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~ 85 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRI 85 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHH
Confidence 3568899999999999999988876 34556 5687888888778888887777777654322 223344566677
Q ss_pred CCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecchhhhhccCccceEEccCCChH-hHHHHHHHHhhCCC-C
Q 003773 114 RGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDRSVALQMGSIDIISVKELGEE-ECWSLFKQVAFLGR-S 191 (796)
Q Consensus 114 ~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~~~~~~~~~~~~~l~~l~~~-e~~~lf~~~~~~~~-~ 191 (796)
.+++.++|+||-... .+.-..+...+..+.+.-+|+.|+|..-. ......+.+.+++.. ++.++|...+.... .
T Consensus 86 ~~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 86 GDRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred hhhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccc
Confidence 889999999998321 12233444455566666779999997543 234557777888764 79999887764322 1
Q ss_pred CCCCcchhHHHHHHHHhcCCCchhHHHHHHHHhcCCCHHHHHHHHhhhhcccccc-------CCCccchhhhhccCCCCh
Q 003773 192 FEDCEKLEPIGRKIACKCKGLPLAAKVIGNLLRSKRTVSEWQRILDSEMWKVEEI-------GKGLLPPLLLSYNDLPSS 264 (796)
Q Consensus 192 ~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~-------~~~~~~~l~~s~~~L~~~ 264 (796)
..-.........+|.+..+|.|++|...++..+.- ...+-...++.....+.+. .....+.+..||.-|..
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg- 239 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG- 239 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh-
Confidence 12233446678899999999999999999988764 4444444444322222222 13467889999999988
Q ss_pred hhhhhHHhhhcCCCCCceecHHHHHHHHHHcCCcCCCCChhHHHHHHHHHHHHHhcccccc
Q 003773 265 SMVKRCFSYCSVFPKDYNIRKEELITLWMAQCYLNSEEDEEMEIIGEEYFNILATRSFFQE 325 (796)
Q Consensus 265 ~~~k~~fl~~~~fp~~~~i~~~~Li~~wia~g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~ 325 (796)
..+..|-.++.|...+... ...|.+.|--.... .-.....+..++++++...
T Consensus 240 -we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~----~y~~~~a~~ll~~kslv~a 291 (414)
T COG3903 240 -WERALFGRLAVFVGGFDLG----LALAVAAGADVDVP----RYLVLLALTLLVDKSLVVA 291 (414)
T ss_pred -HHHHHhcchhhhhhhhccc----HHHHHhcCCccccc----hHHHHHHHHHHhhccchhh
Confidence 8888999999988776543 23344433321111 1112333555677777654
No 81
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.44 E-value=8e-06 Score=88.49 Aligned_cols=188 Identities=11% Similarity=0.081 Sum_probs=117.9
Q ss_pred hhhccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc--------------------
Q 003773 6 EEWTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKR-------------------- 65 (796)
Q Consensus 6 ~~~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-------------------- 65 (796)
.+...|..-+++||.+..++.|......+.-..+..++|+.|+||||+|+.+++..-...
T Consensus 5 ~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~ 84 (535)
T PRK08451 5 ALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENR 84 (535)
T ss_pred HHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcC
Confidence 344457788899999998887776655444456778999999999999998876521111
Q ss_pred cCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHH----hCCceEEEEEeCCCCCCccChhhHhhhcc
Q 003773 66 KFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQES----IRGKKFFLVLDDVWDGDFKKWDPFFSCLK 141 (796)
Q Consensus 66 ~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~----l~~~~~LlvlDd~~~~~~~~~~~l~~~~~ 141 (796)
+++ ++.+....... .+++.+.+... ..+++-++|+|+++..+.+....+...+.
T Consensus 85 h~d-v~eldaas~~g---------------------Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LE 142 (535)
T PRK08451 85 HID-IIEMDAASNRG---------------------IDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLE 142 (535)
T ss_pred CCe-EEEeccccccC---------------------HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHh
Confidence 111 22222111111 22222222110 12556789999997776667777877776
Q ss_pred CCCCCcEEEEEecch-hhhhcc-CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHH
Q 003773 142 NGHHESKILITTRDR-SVALQM-GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVI 219 (796)
Q Consensus 142 ~~~~gs~iiiTsr~~-~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 219 (796)
.....+++|++|.+. .+...+ .....+++.+++.++..+.+.+.+...+.. -.++.+..|++.++|.+.-+...
T Consensus 143 Epp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~----i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 143 EPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS----YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred hcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCcHHHHHHH
Confidence 666667777777653 111111 224689999999999999888776433221 12456788999999988544433
No 82
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=4.6e-06 Score=91.42 Aligned_cols=194 Identities=12% Similarity=0.123 Sum_probs=117.9
Q ss_pred hccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCC-------------------
Q 003773 8 WTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFD------------------- 68 (796)
Q Consensus 8 ~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~------------------- 68 (796)
...|..-.+++|.+..++.|......+.-...+.++|+.|+||||+|+.+++..-.....+
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hp 88 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHV 88 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCC
Confidence 3447777889999988887666554333356788999999999999999887632111110
Q ss_pred eEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHH-HhCCceEEEEEeCCCCCCccChhhHhhhccCCCCCc
Q 003773 69 IVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQE-SIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHES 147 (796)
Q Consensus 69 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs 147 (796)
-+++++....... .++..+.+.+.. -..+++-++|+|+++.........+...+.......
T Consensus 89 Dv~eId~a~~~~I------------------d~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ 150 (624)
T PRK14959 89 DVVEIDGASNRGI------------------DDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARV 150 (624)
T ss_pred ceEEEecccccCH------------------HHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCE
Confidence 0222221111111 111111111111 123566799999997766566677777766544456
Q ss_pred EEEEEecc-hhhhhcc-CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCc-hhHHHHHHHH
Q 003773 148 KILITTRD-RSVALQM-GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLP-LAAKVIGNLL 223 (796)
Q Consensus 148 ~iiiTsr~-~~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~~~~l 223 (796)
.+|++|.. ..+...+ .....+++++++.++..+.+.+.+...... -..+.+..|++.++|.. .|+..+...+
T Consensus 151 ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~----id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 151 TFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD----YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred EEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 66666654 3332221 224588999999999999888876433221 12456788999999954 6777766554
No 83
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.2e-07 Score=95.38 Aligned_cols=61 Identities=16% Similarity=0.096 Sum_probs=39.5
Q ss_pred cCccccceEecCCCCccccc--hhhhccCCccEeecccccccc--ccchhhccccCCCeeecCCc
Q 003773 454 GKLIHLKYLNLSELCIERLP--ETLCELYNLQKLAVRWCTNLR--ELPAGIGKLMNMRSLMNGQT 514 (796)
Q Consensus 454 ~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~ 514 (796)
+++.+|+...|.++.+...+ .....|++++.|||+.|-.-. .+-.-...|++|+.|+++.|
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N 182 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN 182 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc
Confidence 45777788888877776655 356777888888887754221 12223456777777777766
No 84
>PRK08727 hypothetical protein; Validated
Probab=98.43 E-value=3.1e-06 Score=83.16 Aligned_cols=170 Identities=12% Similarity=0.040 Sum_probs=96.3
Q ss_pred CcccccHHHHH-HHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhc
Q 003773 15 LQIEGLDDDNT-LALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLD 93 (796)
Q Consensus 15 ~~~vGr~~~~~-~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 93 (796)
+.||+.....- .+..... +.....+.|+|.+|+|||+|++++++... .....+.|++..+ ....+.+
T Consensus 19 ~~f~~~~~n~~~~~~~~~~-~~~~~~l~l~G~~G~GKThL~~a~~~~~~--~~~~~~~y~~~~~------~~~~~~~--- 86 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAA-GQSSDWLYLSGPAGTGKTHLALALCAAAE--QAGRSSAYLPLQA------AAGRLRD--- 86 (233)
T ss_pred hhccCCcHHHHHHHHHHHh-ccCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEeHHH------hhhhHHH---
Confidence 34666554433 2222111 22335699999999999999999988632 2233466665322 1111111
Q ss_pred cCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCC-ccChh-hHhhhccC-CCCCcEEEEEecch---------hhhhc
Q 003773 94 KSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGD-FKKWD-PFFSCLKN-GHHESKILITTRDR---------SVALQ 161 (796)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~-~~~~~-~l~~~~~~-~~~gs~iiiTsr~~---------~~~~~ 161 (796)
..+ .+ .+.-+||+||+.... ...|+ .+...+.. ...|..||+|++.. ++...
T Consensus 87 -----------~~~----~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SR 150 (233)
T PRK08727 87 -----------ALE----AL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSR 150 (233)
T ss_pred -----------HHH----HH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHH
Confidence 111 11 123489999995432 12232 33333322 12455699999852 22222
Q ss_pred cCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhH
Q 003773 162 MGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAA 216 (796)
Q Consensus 162 ~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 216 (796)
+.....+++++++.++-.+++++++...+- .-.++...-|++.+.|..-.+
T Consensus 151 l~~~~~~~l~~~~~e~~~~iL~~~a~~~~l----~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 151 LAQCIRIGLPVLDDVARAAVLRERAQRRGL----ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HhcCceEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHhCCCCHHHH
Confidence 233468999999999999999987753221 122455777888888755444
No 85
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.42 E-value=3.1e-06 Score=83.46 Aligned_cols=175 Identities=14% Similarity=0.112 Sum_probs=99.1
Q ss_pred cCccc-ccHHHHHHHh-cccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHH
Q 003773 14 KLQIE-GLDDDNTLAL-ASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEV 91 (796)
Q Consensus 14 ~~~~v-Gr~~~~~~l~-~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 91 (796)
-++|+ |+.++....+ .+.......+.+.|+|+.|+|||+||+++++... ... ..+.++++.... ..
T Consensus 17 ~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~------~~---- 84 (227)
T PRK08903 17 FDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPL------LA---- 84 (227)
T ss_pred hcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhH------HH----
Confidence 44555 6555544322 2222223456788999999999999999988632 122 234555543311 00
Q ss_pred hccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCC-CCCc-EEEEEecchhhhh--------c
Q 003773 92 LDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNG-HHES-KILITTRDRSVAL--------Q 161 (796)
Q Consensus 92 l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~-~~gs-~iiiTsr~~~~~~--------~ 161 (796)
+ ... ...-++|+||++..+......+...+... ..+. .+|+|++...... .
T Consensus 85 ~------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr 145 (227)
T PRK08903 85 F------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTR 145 (227)
T ss_pred H------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHH
Confidence 0 011 22347888999654333333444444321 1233 3666666432211 1
Q ss_pred cCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHHHHH
Q 003773 162 MGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLL 223 (796)
Q Consensus 162 ~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 223 (796)
+.....+++.+++.++-.+++.+.+-..+. .--++....+++...|++..+..+...+
T Consensus 146 ~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v----~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 146 LGWGLVYELKPLSDADKIAALKAAAAERGL----QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HhcCeEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 222368899999998877777765432221 1224567888889999998887776655
No 86
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=6.4e-06 Score=91.38 Aligned_cols=211 Identities=14% Similarity=0.103 Sum_probs=117.0
Q ss_pred hhhhccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEE-----EeCCcC
Q 003773 5 LEEWTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWV-----CVSDAF 79 (796)
Q Consensus 5 ~~~~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv-----~~~~~~ 79 (796)
.-+...|..-.++||.+..++.|......+.-...+.++|+.|+||||+|+.+++..-.....+.-.|. .++...
T Consensus 6 l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~ 85 (620)
T PRK14954 6 IARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECE 85 (620)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCH
Confidence 334455788889999999999777665544445678899999999999999888763221111100010 111110
Q ss_pred CHHHHHHHHHHHhc-cCCCCCccHHHHHHHHHHH----hCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEec
Q 003773 80 EEIRIAKAILEVLD-KSASSLGEFQSLMQQTQES----IRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTR 154 (796)
Q Consensus 80 ~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~~~~~----l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr 154 (796)
+-..+...-.-.+. .........+++...+... ..+++-++|+|+++.......+.+...+..-...+.+|++|.
T Consensus 86 sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~ 165 (620)
T PRK14954 86 SCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATT 165 (620)
T ss_pred HHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 00010000000000 0000111122222222111 235566889999977655566777777766555566665554
Q ss_pred c-hhhhhc-cCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCch-hHHHH
Q 003773 155 D-RSVALQ-MGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPL-AAKVI 219 (796)
Q Consensus 155 ~-~~~~~~-~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~ 219 (796)
. ..+... ......+++.+++.++....+.+.+...+.. -..+.+..+++.++|..- |+..+
T Consensus 166 ~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~----I~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 166 ELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ----IDADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred ChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHhCCCHHHHHHHH
Confidence 3 333222 2235689999999999888887765432211 124567889999999554 44433
No 87
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=8.1e-06 Score=89.91 Aligned_cols=196 Identities=10% Similarity=0.084 Sum_probs=120.0
Q ss_pred hhhhccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCC----------------
Q 003773 5 LEEWTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFD---------------- 68 (796)
Q Consensus 5 ~~~~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~---------------- 68 (796)
+++|. |..-+++||.+..++.|......+.-...+.++|+.|+||||+|+.+++........+
T Consensus 4 ~~kyR-P~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~ 82 (584)
T PRK14952 4 YRKYR-PATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPN 82 (584)
T ss_pred HHHhC-CCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcc
Confidence 33444 7788899999999997776665444456788999999999999999887632111110
Q ss_pred -----eEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHH-hCCceEEEEEeCCCCCCccChhhHhhhccC
Q 003773 69 -----IVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQES-IRGKKFFLVLDDVWDGDFKKWDPFFSCLKN 142 (796)
Q Consensus 69 -----~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~ 142 (796)
-++.++..... ...++.++...+... ..+++-++|+|+++..+......+...+..
T Consensus 83 ~~~~~dvieidaas~~------------------gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE 144 (584)
T PRK14952 83 GPGSIDVVELDAASHG------------------GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE 144 (584)
T ss_pred cCCCceEEEecccccc------------------CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc
Confidence 01222211111 111222222222111 135666899999987777777778777777
Q ss_pred CCCCcEEEEEecc-hhhhhcc-CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCc-hhHHHH
Q 003773 143 GHHESKILITTRD-RSVALQM-GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLP-LAAKVI 219 (796)
Q Consensus 143 ~~~gs~iiiTsr~-~~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~ 219 (796)
......+|++|.+ ..+...+ .....+++.+++.++..+.+.+.+...+... ..+.+..|++.++|.+ -|+..+
T Consensus 145 pp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i----~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 145 PPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV----DDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred CCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 6556666665544 3332221 2256899999999999988887764332211 1345677888999976 455555
Q ss_pred HHHH
Q 003773 220 GNLL 223 (796)
Q Consensus 220 ~~~l 223 (796)
-.++
T Consensus 221 dql~ 224 (584)
T PRK14952 221 DQLL 224 (584)
T ss_pred HHHH
Confidence 4444
No 88
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.41 E-value=6.7e-07 Score=87.66 Aligned_cols=90 Identities=17% Similarity=0.114 Sum_probs=61.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCc--CCHHHHHHHHHHHhccCCCCCcc------HHHHHH
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDA--FEEIRIAKAILEVLDKSASSLGE------FQSLMQ 107 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~------~~~~~~ 107 (796)
.-+.++|.|++|+|||||++++++..... +|+.++|+.+..+ .+..++++.+...+-........ ......
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 34688999999999999999999985444 8999999997766 78899999883333221111111 112222
Q ss_pred HHHHH-hCCceEEEEEeCCC
Q 003773 108 QTQES-IRGKKFFLVLDDVW 126 (796)
Q Consensus 108 ~~~~~-l~~~~~LlvlDd~~ 126 (796)
..... -.+++.++++|++.
T Consensus 94 ~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHCCCCEEEEEECHH
Confidence 22222 25899999999994
No 89
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=7.4e-06 Score=91.20 Aligned_cols=205 Identities=15% Similarity=0.142 Sum_probs=115.5
Q ss_pred hhccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHH
Q 003773 7 EWTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAK 86 (796)
Q Consensus 7 ~~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 86 (796)
+...|..-.++||.+..++.|..+...+.-.+.+.++|+.|+||||+|+.+++..-.....+ .+-.+.... ....
T Consensus 10 ~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~--~~~pC~~C~---~~~~ 84 (725)
T PRK07133 10 RKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD--LLEPCQECI---ENVN 84 (725)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC--CCCchhHHH---Hhhc
Confidence 33447778889999999998777665444567788999999999999999887521111000 000000000 0000
Q ss_pred HHHHHhccCC---CCCccHHHHHHHHHHH-hCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEec-chhhhhc
Q 003773 87 AILEVLDKSA---SSLGEFQSLMQQTQES-IRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTR-DRSVALQ 161 (796)
Q Consensus 87 ~i~~~l~~~~---~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr-~~~~~~~ 161 (796)
.-...+.... ....++.++.+.+... ..+++-++|+|+++......+..+...+......+.+|++|. ...+...
T Consensus 85 ~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred CCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 0000000000 0111122222222211 235677999999977666667777777665544555555554 3333222
Q ss_pred -cCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCc-hhHHHHH
Q 003773 162 -MGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLP-LAAKVIG 220 (796)
Q Consensus 162 -~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~~ 220 (796)
......+++.+++.++..+.+...+...+.. ...+.+..+++.++|.+ .|+..+.
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI~----id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENIS----YEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2234689999999999998888765332211 11345778999998866 4444443
No 90
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.41 E-value=2.9e-08 Score=99.12 Aligned_cols=306 Identities=17% Similarity=0.189 Sum_probs=163.9
Q ss_pred cccceeeecccccCCCcccccccccccccCccccceEecCCCC-cc--ccchhhhccCCccEeeccccccccccc--hhh
Q 003773 426 ACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELC-IE--RLPETLCELYNLQKLAVRWCTNLRELP--AGI 500 (796)
Q Consensus 426 ~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~-i~--~lp~~i~~l~~L~~L~l~~~~~~~~lp--~~~ 500 (796)
..||.|.+.||. ......+-..-.++++++.|++.+|. ++ .+-..-..+++|++|++..|..+.... ...
T Consensus 138 g~lk~LSlrG~r-----~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 138 GFLKELSLRGCR-----AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred cccccccccccc-----cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence 357777777642 22222222334467777777777776 33 222223467788888888777664432 123
Q ss_pred ccccCCCeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhcc
Q 003773 501 GKLMNMRSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQ 580 (796)
Q Consensus 501 ~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~ 580 (796)
..+++|.+|+++.|..++. . +++.+ ...++. ++.+...+|..... +.....
T Consensus 213 ~gC~kL~~lNlSwc~qi~~--~------gv~~~----------------~rG~~~---l~~~~~kGC~e~~l--e~l~~~ 263 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISG--N------GVQAL----------------QRGCKE---LEKLSLKGCLELEL--EALLKA 263 (483)
T ss_pred HhhhhHHHhhhccCchhhc--C------cchHH----------------hccchh---hhhhhhcccccccH--HHHHHH
Confidence 4577788888887755443 1 11111 111111 11111111211100 000000
Q ss_pred ccccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCC-CCch-h-hhccCCcEEEEcCCC
Q 003773 581 LYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNI-FPKW-L-TLLTNLRELKLFSCV 657 (796)
Q Consensus 581 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p~~-~-~~l~~L~~L~L~~~~ 657 (796)
-..+..+..+++..+.. ..+.++...-..+..|+.|..+++.... .+-| + ...++|+.|.+..|+
T Consensus 264 ~~~~~~i~~lnl~~c~~------------lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~ 331 (483)
T KOG4341|consen 264 AAYCLEILKLNLQHCNQ------------LTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQ 331 (483)
T ss_pred hccChHhhccchhhhcc------------ccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccc
Confidence 11222233333222211 1133333334455677888887776421 1111 1 267999999999998
Q ss_pred CCCC--CCccccc--cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeecccccccccccccccccc
Q 003773 658 NCEH--LPPLGKL--LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKE 733 (796)
Q Consensus 658 ~~~~--lp~l~~l--~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~ 733 (796)
...+ +..++.- .|+.|++..|..+..- .+..+ ..++|.|++|.++.|...++..+.. ...
T Consensus 332 ~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~sl-------------s~~C~~lr~lslshce~itD~gi~~-l~~ 395 (483)
T KOG4341|consen 332 QFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLASL-------------SRNCPRLRVLSLSHCELITDEGIRH-LSS 395 (483)
T ss_pred hhhhhhhhhhhcCChhhhhhcccccceehhh--hHhhh-------------ccCCchhccCChhhhhhhhhhhhhh-hhh
Confidence 6554 2334443 6888888776543322 12222 3488999999999887665542210 012
Q ss_pred ccCCCCccceeeccCCCCCCC-CCcCCCCCCCccEEEEcCCCchhhccCCCCcccccCCCCCCC
Q 003773 734 NISIMPRLSSLEIDCCSKLNV-LPDHLLQTTTLQELSIRGCPILEERYRGEDYHMISHIPHIKL 796 (796)
Q Consensus 734 ~~~~l~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~~~~ 796 (796)
.-..+..|+.+.+++|+.+.. .-..+..+++|+.+++.+|..+++..-. ....|+|+++|
T Consensus 396 ~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~---~~~~~lp~i~v 456 (483)
T KOG4341|consen 396 SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAIS---RFATHLPNIKV 456 (483)
T ss_pred ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhH---HHHhhCcccee
Confidence 234677899999999987643 2234557889999999999988764311 12457777764
No 91
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=5.5e-06 Score=87.15 Aligned_cols=177 Identities=12% Similarity=0.050 Sum_probs=105.8
Q ss_pred CcccccHHHHHHHhcccCCCC---------CcEEEEEEcCCCCcHHHHHHHHHcCcccc-------------------cc
Q 003773 15 LQIEGLDDDNTLALASSEQQK---------GLRIISLFGLGGIGKTTLAQLAFNNEGVK-------------------RK 66 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~~~~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-------------------~~ 66 (796)
++++|.+.-++.|......+. -.+.+.++|+.|+|||++|+.+++..... .|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 468999998886665544322 35678899999999999999887642111 11
Q ss_pred CCeEEEEEeC-CcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHH-HhCCceEEEEEeCCCCCCccChhhHhhhccCCC
Q 003773 67 FDIVIWVCVS-DAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQE-SIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGH 144 (796)
Q Consensus 67 f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~ 144 (796)
.| +.++... ...... ++.++.+.+.. -..+++-++|+|+++.........+...+....
T Consensus 85 pD-~~~i~~~~~~i~i~------------------~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~ 145 (394)
T PRK07940 85 PD-VRVVAPEGLSIGVD------------------EVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPP 145 (394)
T ss_pred CC-EEEeccccccCCHH------------------HHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCC
Confidence 12 1111111 011111 11112211111 113455688889998766666666777776655
Q ss_pred CCcEEEEEecch-hhhhcc-CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHH
Q 003773 145 HESKILITTRDR-SVALQM-GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVI 219 (796)
Q Consensus 145 ~gs~iiiTsr~~-~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 219 (796)
.+..+|++|.+. .+...+ .....+.+.+++.++..+.+.+... . ..+.+..+++.++|.|.....+
T Consensus 146 ~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-----~----~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 146 PRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-----V----DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----C----CHHHHHHHHHHcCCCHHHHHHH
Confidence 667677766653 332221 2246899999999999988864321 1 1344778999999998654333
No 92
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.39 E-value=1.9e-07 Score=85.75 Aligned_cols=81 Identities=30% Similarity=0.379 Sum_probs=24.3
Q ss_pred hcCcccceeeecccccCCCccccccccccccc-CccccceEecCCCCccccchhhhccCCccEeeccccccccccchhh-
Q 003773 423 SKVACLRALVIRQWFVPLDDQNFIREIPENIG-KLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGI- 500 (796)
Q Consensus 423 ~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~-~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~- 500 (796)
.+...++.|+|+ ++.+..+. .++ .+.+|+.|++++|.|+.++ .+..+++|++|++++|. +..++..+
T Consensus 16 ~n~~~~~~L~L~--------~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~ 84 (175)
T PF14580_consen 16 NNPVKLRELNLR--------GNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLD 84 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHH
T ss_pred cccccccccccc--------cccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchH
Confidence 344567777877 56666553 344 4677888888888877775 46777888888888766 55665444
Q ss_pred ccccCCCeeecCCc
Q 003773 501 GKLMNMRSLMNGQT 514 (796)
Q Consensus 501 ~~l~~L~~L~l~~~ 514 (796)
..+++|++|++++|
T Consensus 85 ~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 85 KNLPNLQELYLSNN 98 (175)
T ss_dssp HH-TT--EEE-TTS
T ss_pred HhCCcCCEEECcCC
Confidence 35778888888777
No 93
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=7.7e-06 Score=93.84 Aligned_cols=195 Identities=10% Similarity=0.051 Sum_probs=120.4
Q ss_pred hhhhccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccc------------------
Q 003773 5 LEEWTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRK------------------ 66 (796)
Q Consensus 5 ~~~~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~------------------ 66 (796)
+-+.+.|..-.++||.+..++.|...+..+.-...+.++|+.|+||||+|+.+++.......
T Consensus 5 l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g 84 (824)
T PRK07764 5 LYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPG 84 (824)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcC
Confidence 34555577888999999999877766554444567889999999999999998876321111
Q ss_pred ----CCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHH-HHhCCceEEEEEeCCCCCCccChhhHhhhcc
Q 003773 67 ----FDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQ-ESIRGKKFFLVLDDVWDGDFKKWDPFFSCLK 141 (796)
Q Consensus 67 ----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~ 141 (796)
++ +++++......+ .++.++.+.+. .-..++.-++|||+++......+..|+..+.
T Consensus 85 ~~~~~d-v~eidaas~~~V------------------d~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LE 145 (824)
T PRK07764 85 GPGSLD-VTEIDAASHGGV------------------DDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVE 145 (824)
T ss_pred CCCCCc-EEEecccccCCH------------------HHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHh
Confidence 11 222221111111 11111111111 1123566688999998877777778888887
Q ss_pred CCCCCcEEEEEecch-hhhhcc-CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCch-hHHH
Q 003773 142 NGHHESKILITTRDR-SVALQM-GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPL-AAKV 218 (796)
Q Consensus 142 ~~~~gs~iiiTsr~~-~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~ 218 (796)
.-...+.+|++|.+. .+...+ .....|++..++.++..+.+.+.+...+.. ...+....|++.++|.+. ++..
T Consensus 146 EpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~----id~eal~lLa~~sgGdlR~Al~e 221 (824)
T PRK07764 146 EPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP----VEPGVLPLVIRAGGGSVRDSLSV 221 (824)
T ss_pred CCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 766667777666543 232222 235689999999999988888765332211 123456778999999773 4444
Q ss_pred HHHH
Q 003773 219 IGNL 222 (796)
Q Consensus 219 ~~~~ 222 (796)
+-.+
T Consensus 222 LEKL 225 (824)
T PRK07764 222 LDQL 225 (824)
T ss_pred HHHH
Confidence 4333
No 94
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.38 E-value=7.7e-06 Score=77.91 Aligned_cols=90 Identities=10% Similarity=0.144 Sum_probs=63.7
Q ss_pred CceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecch-hhhhcc-CccceEEccCCChHhHHHHHHHHhhCCCCC
Q 003773 115 GKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDR-SVALQM-GSIDIISVKELGEEECWSLFKQVAFLGRSF 192 (796)
Q Consensus 115 ~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~-~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~ 192 (796)
+.+-++|+|+++....+..+.+...+....+.+.+|++|++. .+...+ .....+++.+++.++..+.+.+.. .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~g-----i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQG-----I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHcC-----C
Confidence 567789999997765556677777776655667777777653 222111 124589999999999988887751 1
Q ss_pred CCCcchhHHHHHHHHhcCCCch
Q 003773 193 EDCEKLEPIGRKIACKCKGLPL 214 (796)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~g~PL 214 (796)
..+.+..+++.++|.|.
T Consensus 170 -----~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 -----SEEAAELLLALAGGSPG 186 (188)
T ss_pred -----CHHHHHHHHHHcCCCcc
Confidence 14568899999999885
No 95
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=1.1e-05 Score=85.79 Aligned_cols=187 Identities=14% Similarity=0.141 Sum_probs=109.5
Q ss_pred hhccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccc------ccCCe-EEEEEeCCcC
Q 003773 7 EWTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVK------RKFDI-VIWVCVSDAF 79 (796)
Q Consensus 7 ~~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------~~f~~-~~wv~~~~~~ 79 (796)
+...|..-.+++|.+..++.+......+.-.+.+.++|++|+|||++|+.+++..... ..|.. ++-+......
T Consensus 9 ~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 88 (367)
T PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNN 88 (367)
T ss_pred HHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCC
Confidence 3445777888999999999877776544445688999999999999999987763211 11211 1111111111
Q ss_pred CHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecc-hhh
Q 003773 80 EEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRD-RSV 158 (796)
Q Consensus 80 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~-~~~ 158 (796)
....+ ..+.+.+... -..+++-++++|+++......+..+...+......+.+|+++.. ..+
T Consensus 89 ~~~~i-~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 89 SVDDI-RNLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred CHHHH-HHHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 11111 1111111100 11245568999999655444566666555444444556665543 222
Q ss_pred hhc-cCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCch
Q 003773 159 ALQ-MGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPL 214 (796)
Q Consensus 159 ~~~-~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 214 (796)
... ......++..+++.++....+.+.+...+... ..+.+..+++.++|.+-
T Consensus 152 ~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i----~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 152 IPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKF----EDDALHIIAQKADGALR 204 (367)
T ss_pred CHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHhCCCCHH
Confidence 211 12235789999999999988888774332211 14567788888998654
No 96
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.36 E-value=4.9e-06 Score=81.81 Aligned_cols=153 Identities=20% Similarity=0.213 Sum_probs=92.3
Q ss_pred ccccCcccccHHHHH--HHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHH
Q 003773 11 ARLKLQIEGLDDDNT--LALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAI 88 (796)
Q Consensus 11 ~~~~~~~vGr~~~~~--~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 88 (796)
|..-++.||.+..+- .++..+...+....+.+||++|+||||||+.++...+ .+ .+.||..+....-..-.++|
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk--~~--SyrfvelSAt~a~t~dvR~i 209 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSK--KH--SYRFVELSATNAKTNDVRDI 209 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcC--CC--ceEEEEEeccccchHHHHHH
Confidence 334455777766655 3333333345677888999999999999999988632 22 15566666543333333333
Q ss_pred HHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEE--Eecchhhh---hccC
Q 003773 89 LEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILI--TTRDRSVA---LQMG 163 (796)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iii--Tsr~~~~~---~~~~ 163 (796)
.++-.. ...+.++|.+|++|.+..-...+.+. ++|.-..|.-++| ||.++... ..+.
T Consensus 210 fe~aq~---------------~~~l~krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlS 271 (554)
T KOG2028|consen 210 FEQAQN---------------EKSLTKRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLS 271 (554)
T ss_pred HHHHHH---------------HHhhhcceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHh
Confidence 333211 12356789999999995533222222 2455556776665 55554221 1123
Q ss_pred ccceEEccCCChHhHHHHHHHH
Q 003773 164 SIDIISVKELGEEECWSLFKQV 185 (796)
Q Consensus 164 ~~~~~~l~~l~~~e~~~lf~~~ 185 (796)
...++.++.|+.++...++.+.
T Consensus 272 RC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 272 RCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred ccceeEeccCCHHHHHHHHHHH
Confidence 3568999999999988888773
No 97
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=1.3e-05 Score=89.67 Aligned_cols=187 Identities=14% Similarity=0.106 Sum_probs=116.5
Q ss_pred hhhccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccc---------------------c
Q 003773 6 EEWTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGV---------------------K 64 (796)
Q Consensus 6 ~~~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~---------------------~ 64 (796)
.+...|..-++++|.++.++.|......+.-...+.++|+.|+||||+|+.++..... .
T Consensus 8 ~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~ 87 (614)
T PRK14971 8 ARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQ 87 (614)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcC
Confidence 3455577788999999999988777654444567889999999999999887775211 1
Q ss_pred ccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCC
Q 003773 65 RKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGH 144 (796)
Q Consensus 65 ~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~ 144 (796)
.+|+ +..++.........+. ++.+++... -..+++-++|+|+++..+...++.+...+....
T Consensus 88 ~~~n-~~~ld~~~~~~vd~Ir-~li~~~~~~----------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp 149 (614)
T PRK14971 88 RSYN-IHELDAASNNSVDDIR-NLIEQVRIP----------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP 149 (614)
T ss_pred CCCc-eEEecccccCCHHHHH-HHHHHHhhC----------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCC
Confidence 1233 2222222222222211 111111100 023456688999997766667777888777665
Q ss_pred CCcEEEEEecc-hhhhhcc-CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCch
Q 003773 145 HESKILITTRD-RSVALQM-GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPL 214 (796)
Q Consensus 145 ~gs~iiiTsr~-~~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 214 (796)
..+.+|++|.. ..+...+ .....+++.+++.++....+.+.+...+.. ...+.+..|++.++|..-
T Consensus 150 ~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~----i~~~al~~La~~s~gdlr 217 (614)
T PRK14971 150 SYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT----AEPEALNVIAQKADGGMR 217 (614)
T ss_pred CCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHH
Confidence 66666665543 3332222 235689999999999999888776433221 123457889999999664
No 98
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=1.3e-05 Score=88.81 Aligned_cols=187 Identities=14% Similarity=0.116 Sum_probs=112.3
Q ss_pred hhhhccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc-------------------
Q 003773 5 LEEWTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKR------------------- 65 (796)
Q Consensus 5 ~~~~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~------------------- 65 (796)
+++|. |..-+++||.+..++.|..+...+.-.+.+.++|+.|+|||++|+.+++..-...
T Consensus 7 ~~k~r-P~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g 85 (559)
T PRK05563 7 YRKWR-PQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNG 85 (559)
T ss_pred HHHhC-CCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcC
Confidence 44444 7888899999999997777665444567788999999999999998876521111
Q ss_pred -cCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHH-hCCceEEEEEeCCCCCCccChhhHhhhccCC
Q 003773 66 -KFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQES-IRGKKFFLVLDDVWDGDFKKWDPFFSCLKNG 143 (796)
Q Consensus 66 -~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~ 143 (796)
+++ ++.++...+... .++.++...+... ..++.-++|+|+++......+..+...+...
T Consensus 86 ~~~d-v~eidaas~~~v------------------d~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEep 146 (559)
T PRK05563 86 SLMD-VIEIDAASNNGV------------------DEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEP 146 (559)
T ss_pred CCCC-eEEeeccccCCH------------------HHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCC
Confidence 111 112221111111 1111222221111 2456778899999766656677777766654
Q ss_pred CCCcEEEEEecc-hhhhhcc-CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchh
Q 003773 144 HHESKILITTRD-RSVALQM-GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLA 215 (796)
Q Consensus 144 ~~gs~iiiTsr~-~~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 215 (796)
.....+|++|.. ..+...+ .....++..+++.++..+.+...+...+... ..+.+..|++.++|.+..
T Consensus 147 p~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i----~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 147 PAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEY----EDEALRLIARAAEGGMRD 216 (559)
T ss_pred CCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHH
Confidence 445555555543 2222111 2246788999999999888887764322111 135577788888886643
No 99
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.35 E-value=9.8e-06 Score=90.99 Aligned_cols=207 Identities=18% Similarity=0.139 Sum_probs=115.7
Q ss_pred ccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccC---CeEEEEEeC--C-cCCHHHH
Q 003773 11 ARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKF---DIVIWVCVS--D-AFEEIRI 84 (796)
Q Consensus 11 ~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f---~~~~wv~~~--~-~~~~~~~ 84 (796)
|..-++++|++..+..+.+... ......+.|+|++|+||||+|+.+++.......+ ...-|+.+. . ..+...+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia-~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i 228 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVA-SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREV 228 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHh-cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHH
Confidence 4455679999999997765543 2345679999999999999999988763322222 112233322 1 1122222
Q ss_pred HHHH---------------HHHhccCC----------------CCCccH-HHHHHHHHHHhCCceEEEEEeCCCCCCccC
Q 003773 85 AKAI---------------LEVLDKSA----------------SSLGEF-QSLMQQTQESIRGKKFFLVLDDVWDGDFKK 132 (796)
Q Consensus 85 ~~~i---------------~~~l~~~~----------------~~~~~~-~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~ 132 (796)
...+ ++..+... ++.... ......+.+.+..+++.++-|+.|..+...
T Consensus 229 ~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~ 308 (615)
T TIGR02903 229 TNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNV 308 (615)
T ss_pred hHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCccc
Confidence 1111 11111000 001111 224556677777888888877776666566
Q ss_pred hhhHhhhccCCCCCcEEEE--Eecchhh-hhcc-CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHh
Q 003773 133 WDPFFSCLKNGHHESKILI--TTRDRSV-ALQM-GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACK 208 (796)
Q Consensus 133 ~~~l~~~~~~~~~gs~iii--Tsr~~~~-~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~ 208 (796)
|+.+...+....+...+++ ||++... ...+ .....+.+.+++.+|.++++++.+..... . -..++.+.|.+.
T Consensus 309 ~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~---ls~eal~~L~~y 384 (615)
T TIGR02903 309 PKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-H---LAAGVEELIARY 384 (615)
T ss_pred chhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHC
Confidence 7777666665555554555 5554321 1111 12346788999999999999987642211 1 113445555555
Q ss_pred cCCCchhHHHHHHH
Q 003773 209 CKGLPLAAKVIGNL 222 (796)
Q Consensus 209 ~~g~PLal~~~~~~ 222 (796)
+..-+-|+..++..
T Consensus 385 s~~gRraln~L~~~ 398 (615)
T TIGR02903 385 TIEGRKAVNILADV 398 (615)
T ss_pred CCcHHHHHHHHHHH
Confidence 54445666655544
No 100
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.34 E-value=2.7e-08 Score=97.24 Aligned_cols=88 Identities=20% Similarity=0.211 Sum_probs=54.2
Q ss_pred HHhhhcCcccceeeecccccCCCcccccc-----cccccccCccccceEecCCCC----ccccch-------hhhccCCc
Q 003773 419 VELFSKVACLRALVIRQWFVPLDDQNFIR-----EIPENIGKLIHLKYLNLSELC----IERLPE-------TLCELYNL 482 (796)
Q Consensus 419 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~----i~~lp~-------~i~~l~~L 482 (796)
......+..+..++|++ |.++ .+.+.+.+.++|+.-+++.-. ..++|. .+-.+++|
T Consensus 23 ~~~~~~~~s~~~l~lsg--------nt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L 94 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSG--------NTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKL 94 (382)
T ss_pred HHHhcccCceEEEeccC--------CchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCce
Confidence 33456677888888884 3332 234456667788888887532 224443 34456688
Q ss_pred cEeeccccccccccchh----hccccCCCeeecCCc
Q 003773 483 QKLAVRWCTNLRELPAG----IGKLMNMRSLMNGQT 514 (796)
Q Consensus 483 ~~L~l~~~~~~~~lp~~----~~~l~~L~~L~l~~~ 514 (796)
++|||+.|-.-...+.. +.++.+|++|+|.+|
T Consensus 95 ~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 95 QKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred eEeeccccccCccchHHHHHHHHhccCHHHHhhhcC
Confidence 88888877654433332 455667777777777
No 101
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=1.4e-05 Score=86.35 Aligned_cols=193 Identities=13% Similarity=0.102 Sum_probs=115.1
Q ss_pred hhhhccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc-------------------
Q 003773 5 LEEWTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKR------------------- 65 (796)
Q Consensus 5 ~~~~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~------------------- 65 (796)
.-+...|..-++++|.+..++.+......+.-...+.++|+.|+||||+|+.+++......
T Consensus 7 ~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~ 86 (451)
T PRK06305 7 SSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISS 86 (451)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhc
Confidence 3344557788899999999997776665444456788999999999999998877521110
Q ss_pred --cCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHH-HhCCceEEEEEeCCCCCCccChhhHhhhccC
Q 003773 66 --KFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQE-SIRGKKFFLVLDDVWDGDFKKWDPFFSCLKN 142 (796)
Q Consensus 66 --~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~ 142 (796)
+++ ++++......... ++.++.+.+.. -..+++-++|+|+++.......+.+...+..
T Consensus 87 ~~~~d-~~~i~g~~~~gid------------------~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEe 147 (451)
T PRK06305 87 GTSLD-VLEIDGASHRGIE------------------DIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEE 147 (451)
T ss_pred CCCCc-eEEeeccccCCHH------------------HHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhc
Confidence 111 1112111111111 11111111110 1235677899999966554455666666666
Q ss_pred CCCCcEEEEEecch-hhhhcc-CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCc-hhHHHH
Q 003773 143 GHHESKILITTRDR-SVALQM-GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLP-LAAKVI 219 (796)
Q Consensus 143 ~~~gs~iiiTsr~~-~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~ 219 (796)
....+.+|++|... .+...+ .....+++.+++.++..+.+.+.+...+.. -..+.+..+++.++|.+ .|+..+
T Consensus 148 p~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~----i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 148 PPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE----TSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred CCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55566677666432 222111 224689999999999998888776432211 12456788999999965 444444
Q ss_pred H
Q 003773 220 G 220 (796)
Q Consensus 220 ~ 220 (796)
-
T Consensus 224 e 224 (451)
T PRK06305 224 D 224 (451)
T ss_pred H
Confidence 3
No 102
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.34 E-value=3.6e-07 Score=83.87 Aligned_cols=101 Identities=27% Similarity=0.266 Sum_probs=48.8
Q ss_pred cCcccceeeecccccCCCcccccccccccccCccccceEecCCCCccccchhh-hccCCccEeeccccccccccc--hhh
Q 003773 424 KVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPETL-CELYNLQKLAVRWCTNLRELP--AGI 500 (796)
Q Consensus 424 ~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L~~L~l~~~~~~~~lp--~~~ 500 (796)
.+.+|+.|+++ +|.+..++ .+..+++|+.|++++|.|+.++..+ ..+++|++|++++|. +..+. ..+
T Consensus 40 ~l~~L~~L~Ls--------~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L 109 (175)
T PF14580_consen 40 TLDKLEVLDLS--------NNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNK-ISDLNELEPL 109 (175)
T ss_dssp T-TT--EEE-T--------TS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGGG
T ss_pred hhcCCCEEECC--------CCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCc-CCChHHhHHH
Confidence 57789999999 88888875 4778999999999999999987655 469999999999877 44332 357
Q ss_pred ccccCCCeeecCCccccccCcc----cCCCCCCcccCCC
Q 003773 501 GKLMNMRSLMNGQTEKLKYLPI----GISRLTSLRTLEK 535 (796)
Q Consensus 501 ~~l~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~~ 535 (796)
..+++|+.|++.+|+.. ..+. -+..+++|+.|+.
T Consensus 110 ~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 110 SSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp GG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETT
T ss_pred HcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCC
Confidence 78999999999999543 2222 2556777777764
No 103
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.34 E-value=5.9e-06 Score=81.37 Aligned_cols=155 Identities=16% Similarity=0.144 Sum_probs=90.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRG 115 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 115 (796)
..+.+.|+|+.|+|||+|++++++... ..-..+.++.+..... . ..+..+.+ ..
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~v~y~~~~~~~~---~-----------------~~~~~~~~----~~ 97 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELS--QRGRAVGYVPLDKRAW---F-----------------VPEVLEGM----EQ 97 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEEHHHHhh---h-----------------hHHHHHHh----hh
Confidence 446889999999999999999888632 2223466665532100 0 01111111 11
Q ss_pred ceEEEEEeCCCCCC-ccChhh-HhhhccCC-CCC-cEEEEEecch---------hhhhccCccceEEccCCChHhHHHHH
Q 003773 116 KKFFLVLDDVWDGD-FKKWDP-FFSCLKNG-HHE-SKILITTRDR---------SVALQMGSIDIISVKELGEEECWSLF 182 (796)
Q Consensus 116 ~~~LlvlDd~~~~~-~~~~~~-l~~~~~~~-~~g-s~iiiTsr~~---------~~~~~~~~~~~~~l~~l~~~e~~~lf 182 (796)
--++++||+.... ...|+. +...+... ..| .++|+||+.. ++...+.....+++++++.++-.+++
T Consensus 98 -~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l 176 (235)
T PRK08084 98 -LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQAL 176 (235)
T ss_pred -CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHH
Confidence 1378899995522 123432 33333221 123 3699999853 22223344468999999999999998
Q ss_pred HHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHHH
Q 003773 183 KQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIGN 221 (796)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~ 221 (796)
.+++...+ -.--+++..-|++.+.|..-++..+-.
T Consensus 177 ~~~a~~~~----~~l~~~v~~~L~~~~~~d~r~l~~~l~ 211 (235)
T PRK08084 177 QLRARLRG----FELPEDVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred HHHHHHcC----CCCCHHHHHHHHHhhcCCHHHHHHHHH
Confidence 88664321 122256677788888886655544433
No 104
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=1.4e-05 Score=88.24 Aligned_cols=205 Identities=15% Similarity=0.083 Sum_probs=116.8
Q ss_pred hhhhhccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHH
Q 003773 4 VLEEWTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIR 83 (796)
Q Consensus 4 ~~~~~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 83 (796)
|+-+...|..-.++||.+..++.|......+.-.+.+.++|+.|+||||+|+.+++..-....... ..+....+-..
T Consensus 5 ~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C~~ 81 (563)
T PRK06647 5 GTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSCKS 81 (563)
T ss_pred HHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHHHH
Confidence 344555588889999999999988777654445567889999999999999999886321111100 00111101011
Q ss_pred HHHHH-HHHhccCCCCCccHHHHHH---HHHH-HhCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecc-hh
Q 003773 84 IAKAI-LEVLDKSASSLGEFQSLMQ---QTQE-SIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRD-RS 157 (796)
Q Consensus 84 ~~~~i-~~~l~~~~~~~~~~~~~~~---~~~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~-~~ 157 (796)
+...- .+............++..+ .+.. -..+++-++|+|+++..+...++.+...+......+.+|++|.. ..
T Consensus 82 i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~k 161 (563)
T PRK06647 82 IDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHK 161 (563)
T ss_pred HHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHH
Confidence 00000 0000000000111222221 1111 12456678999999776656667777777665556666666644 22
Q ss_pred hhhcc-CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchh
Q 003773 158 VALQM-GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLA 215 (796)
Q Consensus 158 ~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 215 (796)
+...+ .....+++.+++.++..+.+.+.+...+.. -..+.+..|++.++|.+-.
T Consensus 162 L~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~----id~eAl~lLa~~s~GdlR~ 216 (563)
T PRK06647 162 LPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK----YEDEALKWIAYKSTGSVRD 216 (563)
T ss_pred hHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHH
Confidence 22221 224578999999999988888776432221 1245677788999997743
No 105
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.7e-05 Score=89.06 Aligned_cols=200 Identities=12% Similarity=0.062 Sum_probs=114.1
Q ss_pred ccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHH
Q 003773 9 TTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAI 88 (796)
Q Consensus 9 ~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 88 (796)
..|..-+++||.+..++.|......+.-...+.++|+.|+||||+|+.+++.......... +-.++. -..-+.+
T Consensus 10 yRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~--~~~c~~----c~~c~~i 83 (585)
T PRK14950 10 WRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK--GRPCGT----CEMCRAI 83 (585)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC--CCCCcc----CHHHHHH
Confidence 3477888999999999977766544444467789999999999999998875321110000 000110 1111222
Q ss_pred HHHhcc-----CCCCCccHHH---HHHHHHHH-hCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecch-hh
Q 003773 89 LEVLDK-----SASSLGEFQS---LMQQTQES-IRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDR-SV 158 (796)
Q Consensus 89 ~~~l~~-----~~~~~~~~~~---~~~~~~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~-~~ 158 (796)
...... ........++ ++..+... ..+++-++|+|+++....+..+.+...+......+.+|+++.+. .+
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kl 163 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKV 163 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhh
Confidence 111100 0001111222 22111111 13557789999996655555666776666555566666666542 22
Q ss_pred hhcc-CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHH
Q 003773 159 ALQM-GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKV 218 (796)
Q Consensus 159 ~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 218 (796)
...+ .....+++..++.++....+.+.+...+.. -..+.+..+++.++|.+..+..
T Consensus 164 l~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~----i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 164 PATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN----LEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred hHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 2211 224578899999999988888776433221 1245678899999998854443
No 106
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.33 E-value=3.2e-07 Score=99.20 Aligned_cols=190 Identities=24% Similarity=0.271 Sum_probs=134.8
Q ss_pred ccccccccccccCccccceEecCCCCccccchhhhccC-CccEeeccccccccccchhhccccCCCeeecCCccccccCc
Q 003773 443 QNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELY-NLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTEKLKYLP 521 (796)
Q Consensus 443 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~-~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p 521 (796)
.+.+..-+..+..+..+..|++.++.++.+|.....+. +|+.|++++|. +..+|..++.+++|+.|++++| .+..+|
T Consensus 102 ~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N-~l~~l~ 179 (394)
T COG4886 102 LNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN-DLSDLP 179 (394)
T ss_pred ccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc-hhhhhh
Confidence 33332333445667889999999999999999888885 99999999876 8888878999999999999999 677888
Q ss_pred ccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhccccccccccceEEEeccccCCC
Q 003773 522 IGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLHLEFGRVVDGE 601 (796)
Q Consensus 522 ~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 601 (796)
...+.++.|+.|. ..++.. ..++.. ......|+.+.++.|..
T Consensus 180 ~~~~~~~~L~~L~--ls~N~i--------~~l~~~------------------------~~~~~~L~~l~~~~N~~---- 221 (394)
T COG4886 180 KLLSNLSNLNNLD--LSGNKI--------SDLPPE------------------------IELLSALEELDLSNNSI---- 221 (394)
T ss_pred hhhhhhhhhhhee--ccCCcc--------ccCchh------------------------hhhhhhhhhhhhcCCcc----
Confidence 7766778888775 222221 111110 01222355555555531
Q ss_pred CCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCCCCCccccc-cccceecccccc
Q 003773 602 GEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCEHLPPLGKL-LLEKLTLYNLIS 680 (796)
Q Consensus 602 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~l~~l-~L~~L~l~~~~~ 680 (796)
...+..+....++..|.+.++....++..+..+++|+.|++++| .+..++.++.+ +++.|++++...
T Consensus 222 -----------~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n-~i~~i~~~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 222 -----------IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN-QISSISSLGSLTNLRELDLSGNSL 289 (394)
T ss_pred -----------eecchhhhhcccccccccCCceeeeccchhccccccceeccccc-cccccccccccCccCEEeccCccc
Confidence 12233344556777777777877777889999999999999999 56667778888 999999988665
Q ss_pred ceEe
Q 003773 681 VKRV 684 (796)
Q Consensus 681 l~~~ 684 (796)
....
T Consensus 290 ~~~~ 293 (394)
T COG4886 290 SNAL 293 (394)
T ss_pred cccc
Confidence 4433
No 107
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.33 E-value=1.7e-07 Score=89.42 Aligned_cols=107 Identities=22% Similarity=0.196 Sum_probs=77.1
Q ss_pred ccccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCC
Q 003773 581 LYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCE 660 (796)
Q Consensus 581 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~ 660 (796)
..-.+.++.|+++.|.+.. .+.++.+++|+.|++++|....+..|-..+.|.++|.|++| .++
T Consensus 303 vKL~Pkir~L~lS~N~i~~----------------v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N-~iE 365 (490)
T KOG1259|consen 303 VKLAPKLRRLILSQNRIRT----------------VQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN-KIE 365 (490)
T ss_pred hhhccceeEEeccccceee----------------ehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh-hHh
Confidence 3445778888888887432 23467778899999999888888888778899999999988 677
Q ss_pred CCCccccc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeeccccc
Q 003773 661 HLPPLGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLD 720 (796)
Q Consensus 661 ~lp~l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 720 (796)
++..++.| +|..|++.++.. +.+.. ...+|.+|+|+.+.+.++|
T Consensus 366 ~LSGL~KLYSLvnLDl~~N~I-e~lde---------------V~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 366 TLSGLRKLYSLVNLDLSSNQI-EELDE---------------VNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhhHhhhhheeccccccch-hhHHH---------------hcccccccHHHHHhhcCCC
Confidence 88888888 889998887652 22211 1124677888888655543
No 108
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=2.8e-05 Score=84.46 Aligned_cols=187 Identities=13% Similarity=0.100 Sum_probs=110.9
Q ss_pred ccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccc-c------------------cCCe
Q 003773 9 TTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVK-R------------------KFDI 69 (796)
Q Consensus 9 ~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~------------------~f~~ 69 (796)
..|..-.+++|.+.-++.|..+...+.-...+.++|+.|+||||+|+.++...... . .|.-
T Consensus 10 yRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d 89 (486)
T PRK14953 10 YRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPD 89 (486)
T ss_pred hCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCc
Confidence 34667778999999999877766544445677899999999999999887752110 0 0111
Q ss_pred EEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHH-HhCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcE
Q 003773 70 VIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQE-SIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESK 148 (796)
Q Consensus 70 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~ 148 (796)
+++++.+..... .+...+.+.+.. -..+++-++|+|+++.......+.+...+........
T Consensus 90 ~~eidaas~~gv------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 90 LIEIDAASNRGI------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred EEEEeCccCCCH------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 222221111111 111122111111 1235677999999976555556667666665555555
Q ss_pred EEEEecc-hhhhhc-cCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHH
Q 003773 149 ILITTRD-RSVALQ-MGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAK 217 (796)
Q Consensus 149 iiiTsr~-~~~~~~-~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 217 (796)
+|++|.. ..+... ......+.+.+++.++....+.+.+-..+.. ...+.+..+++.++|.+..+.
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~----id~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE----YEEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHH
Confidence 6555543 222211 1224588999999999988888776432221 124556778888998765443
No 109
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.29 E-value=5.9e-08 Score=97.01 Aligned_cols=306 Identities=17% Similarity=0.117 Sum_probs=176.6
Q ss_pred CCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCccccccc--ccccccCccccceEecCCCC-ccc-
Q 003773 396 NRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIRE--IPENIGKLIHLKYLNLSELC-IER- 471 (796)
Q Consensus 396 ~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--lp~~~~~l~~L~~L~l~~~~-i~~- 471 (796)
..++.|...+... ....-+..+-..++++..|.+.+|. .+++ +-..-..+++|++|++..|. ++.
T Consensus 138 g~lk~LSlrG~r~----v~~sslrt~~~~CpnIehL~l~gc~-------~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~ 206 (483)
T KOG4341|consen 138 GFLKELSLRGCRA----VGDSSLRTFASNCPNIEHLALYGCK-------KITDSSLLSLARYCRKLRHLNLHSCSSITDV 206 (483)
T ss_pred ccccccccccccc----CCcchhhHHhhhCCchhhhhhhcce-------eccHHHHHHHHHhcchhhhhhhcccchhHHH
Confidence 3455665555541 1223345556889999999999853 2222 12223468999999999965 552
Q ss_pred -cchhhhccCCccEeeccccccccc--cchhhccccCCCeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCcc
Q 003773 472 -LPETLCELYNLQKLAVRWCTNLRE--LPAGIGKLMNMRSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTC 548 (796)
Q Consensus 472 -lp~~i~~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~ 548 (796)
+-.-...+++|++|+++.|+.+.. +..-....++|+.+.+.||.... ++.|. ....
T Consensus 207 ~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~-----------le~l~--~~~~-------- 265 (483)
T KOG4341|consen 207 SLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE-----------LEALL--KAAA-------- 265 (483)
T ss_pred HHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc-----------HHHHH--HHhc--------
Confidence 222345789999999999997754 22234455556666666662211 11111 0000
Q ss_pred cccccccCCCCCcceecCCCCCCChhhhhhccccccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEE
Q 003773 549 RLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEEL 628 (796)
Q Consensus 549 ~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 628 (796)
.+.. +..+++..+..++... ....-..|..|+.|..+.+.- ..+..+..--+..++|+.|
T Consensus 266 ---~~~~---i~~lnl~~c~~lTD~~--~~~i~~~c~~lq~l~~s~~t~------------~~d~~l~aLg~~~~~L~~l 325 (483)
T KOG4341|consen 266 ---YCLE---ILKLNLQHCNQLTDED--LWLIACGCHALQVLCYSSCTD------------ITDEVLWALGQHCHNLQVL 325 (483)
T ss_pred ---cChH---hhccchhhhccccchH--HHHHhhhhhHhhhhcccCCCC------------CchHHHHHHhcCCCceEEE
Confidence 0000 1111122222222111 111223566777777765541 2234444445677899999
Q ss_pred EEeecCCCCC--Cchhh-hccCCcEEEEcCCCCCCC--CCccccc--cccceeccccccceEeCccccCCCCCCccCCCC
Q 003773 629 WILFYGGNIF--PKWLT-LLTNLRELKLFSCVNCEH--LPPLGKL--LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSS 701 (796)
Q Consensus 629 ~l~~~~~~~~--p~~~~-~l~~L~~L~L~~~~~~~~--lp~l~~l--~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 701 (796)
.+.++....- -..++ +.+.|+.+++..|..... +-.+..- .|++|.+++|+.+...+.......
T Consensus 326 ~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~--------- 396 (483)
T KOG4341|consen 326 ELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS--------- 396 (483)
T ss_pred eccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc---------
Confidence 9998874221 11122 689999999999964432 3333322 699999999987766533222111
Q ss_pred CCcccCCCccceeeccccccccccccccccccccCCCCccceeeccCCCCCCCCC--cCCCCCCCccEEEE
Q 003773 702 SSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLP--DHLLQTTTLQELSI 770 (796)
Q Consensus 702 ~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp--~~~~~l~~L~~L~l 770 (796)
..+...|+.+.+.+|+.+.+-.. ..+..+++|+.+++-+|+....-+ ....++|++++..+
T Consensus 397 ---~c~~~~l~~lEL~n~p~i~d~~L-----e~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 397 ---SCSLEGLEVLELDNCPLITDATL-----EHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred ---cccccccceeeecCCCCchHHHH-----HHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 13667899999999987765432 345678999999999998764322 22335677666543
No 110
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.26 E-value=7.9e-06 Score=85.25 Aligned_cols=153 Identities=15% Similarity=0.084 Sum_probs=88.8
Q ss_pred cccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHH
Q 003773 10 TARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAIL 89 (796)
Q Consensus 10 ~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 89 (796)
.|..-++++|.++..+.+......+.-..++.++|++|+|||++|+.+++.. ... +..++.+. .....+...+.
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~--~~~---~~~i~~~~-~~~~~i~~~l~ 89 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV--GAE---VLFVNGSD-CRIDFVRNRLT 89 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh--Ccc---ceEeccCc-ccHHHHHHHHH
Confidence 4666788999999999777665544445688889999999999999998762 222 33444443 11111111111
Q ss_pred HHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCC-CccChhhHhhhccCCCCCcEEEEEecchhhh-hcc-Cccc
Q 003773 90 EVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDG-DFKKWDPFFSCLKNGHHESKILITTRDRSVA-LQM-GSID 166 (796)
Q Consensus 90 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~-~~~~~~~l~~~~~~~~~gs~iiiTsr~~~~~-~~~-~~~~ 166 (796)
+.... . .+.+.+-++|+|+++.. ..+....+...+.....++++|+||...... ..+ ....
T Consensus 90 ~~~~~--------------~--~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 90 RFAST--------------V--SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred HHHHh--------------h--cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 11100 0 01234568899999654 2222233444455455677888888753211 111 1234
Q ss_pred eEEccCCChHhHHHHHHH
Q 003773 167 IISVKELGEEECWSLFKQ 184 (796)
Q Consensus 167 ~~~l~~l~~~e~~~lf~~ 184 (796)
.+.+...+.++..+++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 677777777777766543
No 111
>PRK09087 hypothetical protein; Validated
Probab=98.26 E-value=1.1e-05 Score=78.56 Aligned_cols=143 Identities=14% Similarity=0.144 Sum_probs=86.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCc
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGK 116 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 116 (796)
.+.+.|+|++|+|||+|++.++.... +.+++.. .+...+... +.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~---------------------~~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANA---------------------AAE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHh---------------------hhc-
Confidence 46789999999999999998886521 2244321 111111111 111
Q ss_pred eEEEEEeCCCCCCccChhhHhhhccCC-CCCcEEEEEecc---------hhhhhccCccceEEccCCChHhHHHHHHHHh
Q 003773 117 KFFLVLDDVWDGDFKKWDPFFSCLKNG-HHESKILITTRD---------RSVALQMGSIDIISVKELGEEECWSLFKQVA 186 (796)
Q Consensus 117 ~~LlvlDd~~~~~~~~~~~l~~~~~~~-~~gs~iiiTsr~---------~~~~~~~~~~~~~~l~~l~~~e~~~lf~~~~ 186 (796)
-++++||+..... .-+.+...+... ..|..||+|++. +++...+.....+++++++.++-.+++++.+
T Consensus 89 -~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 -GPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred -CeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 2788899954321 123344444322 235679999874 2233334455799999999999999999887
Q ss_pred hCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHH
Q 003773 187 FLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIG 220 (796)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 220 (796)
....- .--+++..-|++.+.|..-++..+-
T Consensus 167 ~~~~~----~l~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 167 ADRQL----YVDPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHcCC----CCCHHHHHHHHHHhhhhHHHHHHHH
Confidence 43211 1225667778888888776665433
No 112
>PLN03150 hypothetical protein; Provisional
Probab=98.26 E-value=1.4e-06 Score=98.77 Aligned_cols=93 Identities=25% Similarity=0.387 Sum_probs=73.5
Q ss_pred ccceeeecccccCCCcccccccccccccCccccceEecCCCCcc-ccchhhhccCCccEeeccccccccccchhhccccC
Q 003773 427 CLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIE-RLPETLCELYNLQKLAVRWCTNLRELPAGIGKLMN 505 (796)
Q Consensus 427 ~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 505 (796)
.++.|+|++ +.....+|..++.+++|++|+|++|.+. .+|..++++++|+.|+|++|.....+|..++.|++
T Consensus 419 ~v~~L~L~~-------n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~ 491 (623)
T PLN03150 419 FIDGLGLDN-------QGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491 (623)
T ss_pred EEEEEECCC-------CCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCC
Confidence 366777773 3334467888888888888888888876 78888888888888888888766788888888888
Q ss_pred CCeeecCCccccccCcccCCC
Q 003773 506 MRSLMNGQTEKLKYLPIGISR 526 (796)
Q Consensus 506 L~~L~l~~~~~~~~~p~~i~~ 526 (796)
|++|++++|.....+|..++.
T Consensus 492 L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 492 LRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred CCEEECcCCcccccCChHHhh
Confidence 888888888766678877654
No 113
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.24 E-value=7.4e-06 Score=79.45 Aligned_cols=165 Identities=14% Similarity=0.161 Sum_probs=93.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRG 115 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 115 (796)
....+.|+|..|+|||.|++++++.......=..++|++ ..++...+...+... . ...+++.+++
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~-----~----~~~~~~~~~~ 97 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDG-----E----IEEFKDRLRS 97 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT-----S----HHHHHHHHCT
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHcc-----c----chhhhhhhhc
Confidence 345689999999999999999998743222223466664 345555555555431 1 1233344443
Q ss_pred ceEEEEEeCCCCCCc-cCh-hhHhhhccCC-CCCcEEEEEecch-h--------hhhccCccceEEccCCChHhHHHHHH
Q 003773 116 KKFFLVLDDVWDGDF-KKW-DPFFSCLKNG-HHESKILITTRDR-S--------VALQMGSIDIISVKELGEEECWSLFK 183 (796)
Q Consensus 116 ~~~LlvlDd~~~~~~-~~~-~~l~~~~~~~-~~gs~iiiTsr~~-~--------~~~~~~~~~~~~l~~l~~~e~~~lf~ 183 (796)
-=++++||++.... ..| +.+...+... ..|.+||+|++.. . +...+...-.+++++.+.++-.+++.
T Consensus 98 -~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~ 176 (219)
T PF00308_consen 98 -ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQ 176 (219)
T ss_dssp -SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHH
T ss_pred -CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHH
Confidence 34678999965321 122 2333333321 3466899999642 1 11222334589999999999999999
Q ss_pred HHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHH
Q 003773 184 QVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIG 220 (796)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 220 (796)
+.+...+-. --+++++-|++.+.+..-.|..+-
T Consensus 177 ~~a~~~~~~----l~~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 177 KKAKERGIE----LPEEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp HHHHHTT------S-HHHHHHHHHHTTSSHHHHHHHH
T ss_pred HHHHHhCCC----CcHHHHHHHHHhhcCCHHHHHHHH
Confidence 887533222 225566677777766555544433
No 114
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=5.3e-07 Score=90.86 Aligned_cols=150 Identities=17% Similarity=0.115 Sum_probs=88.2
Q ss_pred CCceEEEEEeecCCCCCCCCCCCCCCccEEEEecCCCCCCCCchhh--HHHhhhcCcccceeeecccccCCCcccccccc
Q 003773 372 GEKVRHLGLNFEGGASFPMSTPEFNRLRTLLIYDLSPYSPSLNGSI--LVELFSKVACLRALVIRQWFVPLDDQNFIREI 449 (796)
Q Consensus 372 ~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 449 (796)
.++++.+++........+.. ...+.+..++-++++ .++...+ ...+...+++|+.|+++ .|.+...
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~-~~~k~~~~v~~LdLS---~NL~~nw~~v~~i~eqLp~Le~LNls--------~Nrl~~~ 187 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIE-EYSKILPNVRDLDLS---RNLFHNWFPVLKIAEQLPSLENLNLS--------SNRLSNF 187 (505)
T ss_pred HHhhhheeecCccccccchh-hhhhhCCcceeecch---hhhHHhHHHHHHHHHhcccchhcccc--------cccccCC
Confidence 45566677766655533321 223333344444554 2333322 34556788889999888 4433322
Q ss_pred ccc--ccCccccceEecCCCCcc--ccchhhhccCCccEeeccccccccccchhhccccCCCeeecCCccccccCc--cc
Q 003773 450 PEN--IGKLIHLKYLNLSELCIE--RLPETLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTEKLKYLP--IG 523 (796)
Q Consensus 450 p~~--~~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p--~~ 523 (796)
.++ -..+.+|+.|.|+.|.++ .+-.-...+++|+.|+|.+|..+..-......+..|+.|+|++|+. ...+ ..
T Consensus 188 ~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l-i~~~~~~~ 266 (505)
T KOG3207|consen 188 ISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL-IDFDQGYK 266 (505)
T ss_pred ccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc-cccccccc
Confidence 211 235778888888888877 3334455678888888888754433333455677888888888843 3444 33
Q ss_pred CCCCCCcccCC
Q 003773 524 ISRLTSLRTLE 534 (796)
Q Consensus 524 i~~l~~L~~L~ 534 (796)
++.++.|..|+
T Consensus 267 ~~~l~~L~~Ln 277 (505)
T KOG3207|consen 267 VGTLPGLNQLN 277 (505)
T ss_pred cccccchhhhh
Confidence 55666666665
No 115
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=3.7e-05 Score=85.96 Aligned_cols=199 Identities=12% Similarity=0.033 Sum_probs=111.6
Q ss_pred cccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHH
Q 003773 10 TARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAIL 89 (796)
Q Consensus 10 ~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 89 (796)
.|..-.+++|.++.++.|......+.-...+.++|+.|+||||+|+.+++..-...... ...-.++. -..-+.+.
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~-~~~~~Cg~----C~~C~~i~ 85 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDK-PTPEPCGK----CELCRAIA 85 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCC-CCCCCCcc----cHHHHHHh
Confidence 35566789999999997776655443346788999999999999999988632211110 00001111 01111111
Q ss_pred HHhc-----cCCCCCccHHHHHHHHHHH----hCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecch-hhh
Q 003773 90 EVLD-----KSASSLGEFQSLMQQTQES----IRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDR-SVA 159 (796)
Q Consensus 90 ~~l~-----~~~~~~~~~~~~~~~~~~~----l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~-~~~ 159 (796)
.... ........++.+.+.+... ..+++-++|+|+++......+..+...+......+.+|++|.+. .+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 1100 0000111122222111111 12556689999997766566777777776654556566555543 222
Q ss_pred hcc-CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHH
Q 003773 160 LQM-GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAK 217 (796)
Q Consensus 160 ~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 217 (796)
..+ .....+++..++.++....+.+.+...+... ..+.+..|++.++|.+..+.
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i----s~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI----EPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 221 2346788889999998888877664322111 13457889999999775443
No 116
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.22 E-value=1.2e-06 Score=65.68 Aligned_cols=56 Identities=27% Similarity=0.405 Sum_probs=29.0
Q ss_pred ccceEecCCCCccccch-hhhccCCccEeeccccccccccc-hhhccccCCCeeecCCc
Q 003773 458 HLKYLNLSELCIERLPE-TLCELYNLQKLAVRWCTNLRELP-AGIGKLMNMRSLMNGQT 514 (796)
Q Consensus 458 ~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~ 514 (796)
+|++|++++|+++.+|. .+.++++|++|++++|. +..+| ..|..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 45555555555555553 34555555555555544 33333 34555555555555555
No 117
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.21 E-value=2.3e-05 Score=74.71 Aligned_cols=124 Identities=22% Similarity=0.321 Sum_probs=71.9
Q ss_pred ccccCcccccHHHHHHHhccc---CCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHH
Q 003773 11 ARLKLQIEGLDDDNTLALASS---EQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKA 87 (796)
Q Consensus 11 ~~~~~~~vGr~~~~~~l~~~~---~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 87 (796)
+...++++|.|++.+.++++. ..+....-|.+||..|+|||++++++.+....++ . .++ .+.+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G-L-RlI--ev~k---------- 88 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG-L-RLI--EVSK---------- 88 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC-c-eEE--EECH----------
Confidence 445567999999999777662 2233445677899999999999999887622111 1 122 2221
Q ss_pred HHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCC-ccChhhHhhhccCC---CCCcE-EEEEecchhhh
Q 003773 88 ILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGD-FKKWDPFFSCLKNG---HHESK-ILITTRDRSVA 159 (796)
Q Consensus 88 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~-~~~~~~l~~~~~~~---~~gs~-iiiTsr~~~~~ 159 (796)
....++.++.+.++. ...||+|++||+.... ...+..+...+..+ .+... |..||..+++.
T Consensus 89 ---------~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 89 ---------EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred ---------HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 122333344444432 4579999999995532 33455555544432 23333 44455545543
No 118
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.20 E-value=2.1e-05 Score=84.95 Aligned_cols=171 Identities=18% Similarity=0.157 Sum_probs=103.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCc
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGK 116 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 116 (796)
...+.|+|..|+|||+|++++++.......-..+++++ ..++...+...++... +....+.+.++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~~- 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEICQ- 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhcc-
Confidence 35689999999999999999988632222223455554 3456666666654311 122334444443
Q ss_pred eEEEEEeCCCCCCc-cC-hhhHhhhccC-CCCCcEEEEEecch-h--------hhhccCccceEEccCCChHhHHHHHHH
Q 003773 117 KFFLVLDDVWDGDF-KK-WDPFFSCLKN-GHHESKILITTRDR-S--------VALQMGSIDIISVKELGEEECWSLFKQ 184 (796)
Q Consensus 117 ~~LlvlDd~~~~~~-~~-~~~l~~~~~~-~~~gs~iiiTsr~~-~--------~~~~~~~~~~~~l~~l~~~e~~~lf~~ 184 (796)
.-+||+||+..... +. .+.+...+.. ...|..||+|+... . +...+...-.+++++++.++..+++++
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 34788899965321 11 2334443332 12344688887642 1 222223345788999999999999998
Q ss_pred HhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHHHHH
Q 003773 185 VAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLL 223 (796)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 223 (796)
++-..+. ...-.++++.-|++.++|.|-.+.-+...+
T Consensus 287 ~~~~~gl--~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 287 EIKNQNI--KQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHhcCC--CCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 8743221 012336678889999999998877665443
No 119
>PF14516 AAA_35: AAA-like domain
Probab=98.20 E-value=7.6e-05 Score=77.54 Aligned_cols=205 Identities=14% Similarity=0.090 Sum_probs=117.2
Q ss_pred cccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCc-----CCHHHH
Q 003773 10 TARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDA-----FEEIRI 84 (796)
Q Consensus 10 ~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~ 84 (796)
.|.+.+-.|+|...-+.+.+.+.. .-..+.|.|+..+|||+|+.++.+..+. ..+ .++++++..- .+...+
T Consensus 6 ~~~~~~~Yi~R~~~e~~~~~~i~~--~G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 6 LPLDSPFYIERPPAEQECYQEIVQ--PGSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDLEQF 81 (331)
T ss_pred CCCCCCcccCchHHHHHHHHHHhc--CCCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCHHHH
Confidence 345566677888444444444432 2358999999999999999998877433 233 3557776642 234555
Q ss_pred HHHHHHHh----ccCCC-------CCccHHHHHHHHHHHh---CCceEEEEEeCCCCCCc--cChhhHhhhccC---CCC
Q 003773 85 AKAILEVL----DKSAS-------SLGEFQSLMQQTQESI---RGKKFFLVLDDVWDGDF--KKWDPFFSCLKN---GHH 145 (796)
Q Consensus 85 ~~~i~~~l----~~~~~-------~~~~~~~~~~~~~~~l---~~~~~LlvlDd~~~~~~--~~~~~l~~~~~~---~~~ 145 (796)
++.+...+ +.... ...........+.+.+ .+++.+|++|+++.... ...+.+...+.. ...
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 55555444 33210 0111122233343332 26899999999965221 111233332221 110
Q ss_pred -----CcEEEEEecchh--hhhc-----cCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCc
Q 003773 146 -----ESKILITTRDRS--VALQ-----MGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLP 213 (796)
Q Consensus 146 -----gs~iiiTsr~~~--~~~~-----~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 213 (796)
..-.++.....+ .... ......+++.+|+.+|..+|..++... . -....++|...+||+|
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~---~-----~~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE---F-----SQEQLEQLMDWTGGHP 233 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc---C-----CHHHHHHHHHHHCCCH
Confidence 111222222211 1111 112348899999999999999876421 1 1223888999999999
Q ss_pred hhHHHHHHHHhcC
Q 003773 214 LAAKVIGNLLRSK 226 (796)
Q Consensus 214 Lal~~~~~~l~~~ 226 (796)
..+..++..+...
T Consensus 234 ~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 234 YLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999764
No 120
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=5.2e-05 Score=84.64 Aligned_cols=193 Identities=11% Similarity=0.116 Sum_probs=115.4
Q ss_pred hhccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccc--------------------
Q 003773 7 EWTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRK-------------------- 66 (796)
Q Consensus 7 ~~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-------------------- 66 (796)
+...|..-.++||.+.-++.|......+.-...+.++|+.|+||||+|+.+++..-....
T Consensus 8 ~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 8 RKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCC
Confidence 334478888999999888877766554444567789999999999999988876321111
Q ss_pred CCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHH-hCCceEEEEEeCCCCCCccChhhHhhhccCCCC
Q 003773 67 FDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQES-IRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHH 145 (796)
Q Consensus 67 f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~ 145 (796)
++ ++.++....... .++.++...+... ..+++-++|+|+++..+......+...+.....
T Consensus 88 ~d-~~eid~~s~~~v------------------~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~ 148 (576)
T PRK14965 88 VD-VFEIDGASNTGV------------------DDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPP 148 (576)
T ss_pred CC-eeeeeccCccCH------------------HHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCC
Confidence 11 111111111111 1222222222111 134566889999976665666777777766555
Q ss_pred CcEEEEEecc-hhhhhcc-CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCc-hhHHHHHHH
Q 003773 146 ESKILITTRD-RSVALQM-GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLP-LAAKVIGNL 222 (796)
Q Consensus 146 gs~iiiTsr~-~~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~~~~ 222 (796)
.+.+|++|.+ ..+...+ .....+++++++.++....+...+...+.. -..+.+..|++.++|.. .|+..+-..
T Consensus 149 ~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~----i~~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 149 HVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS----ISDAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred CeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC----CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 6666665544 3332221 234688899999999888887765332211 12455778889998855 555555443
No 121
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.18 E-value=1.8e-06 Score=64.67 Aligned_cols=58 Identities=28% Similarity=0.411 Sum_probs=51.3
Q ss_pred cccceeeecccccCCCccccccccc-ccccCccccceEecCCCCccccch-hhhccCCccEeeccccc
Q 003773 426 ACLRALVIRQWFVPLDDQNFIREIP-ENIGKLIHLKYLNLSELCIERLPE-TLCELYNLQKLAVRWCT 491 (796)
Q Consensus 426 ~~L~~L~l~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~ 491 (796)
++|++|+++ ++.+..+| ..+..+++|++|++++|.++.+|. .+.++++|++|++++|.
T Consensus 1 p~L~~L~l~--------~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLS--------NNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEET--------SSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECC--------CCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 478999999 77888886 578899999999999999998876 68999999999999985
No 122
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.18 E-value=6.5e-05 Score=75.05 Aligned_cols=166 Identities=16% Similarity=0.271 Sum_probs=101.8
Q ss_pred cccCcccccHHHHHHHhcccCCCCC--cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHH
Q 003773 12 RLKLQIEGLDDDNTLALASSEQQKG--LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAIL 89 (796)
Q Consensus 12 ~~~~~~vGr~~~~~~l~~~~~~~~~--~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 89 (796)
..++.|-+|+.++..|...+..... +..|.|+|-+|.|||.+.+.+.+.. ..+ .+|+++-+.++.+-+...|+
T Consensus 3 ~l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~~---~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 3 VLEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--NLE---NVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred ccccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--CCc---ceeeehHHhccHHHHHHHHH
Confidence 4578899999999955544433332 3456999999999999999999873 222 57999999999999999999
Q ss_pred HHhccCCCCC-------ccHHHHHHHHHH--Hh--CCceEEEEEeCCCCCCccChhh-Hhhhcc----CCCCCcEEEEEe
Q 003773 90 EVLDKSASSL-------GEFQSLMQQTQE--SI--RGKKFFLVLDDVWDGDFKKWDP-FFSCLK----NGHHESKILITT 153 (796)
Q Consensus 90 ~~l~~~~~~~-------~~~~~~~~~~~~--~l--~~~~~LlvlDd~~~~~~~~~~~-l~~~~~----~~~~gs~iiiTs 153 (796)
...+..+... ......+..+.+ .. +++.++||||+++.- .+.+. +.+.+- -.....-.|+++
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~l--rD~~a~ll~~l~~L~el~~~~~i~iils 155 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADAL--RDMDAILLQCLFRLYELLNEPTIVIILS 155 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhh--hccchHHHHHHHHHHHHhCCCceEEEEe
Confidence 9985222111 111222223333 11 246899999999542 22221 222211 111112244444
Q ss_pred cc---hhhhhccCcc--ceEEccCCChHhHHHHHHH
Q 003773 154 RD---RSVALQMGSI--DIISVKELGEEECWSLFKQ 184 (796)
Q Consensus 154 r~---~~~~~~~~~~--~~~~l~~l~~~e~~~lf~~ 184 (796)
-. ......++.. .++.....+.+|..+++.+
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 43 2222223332 3566788899999998855
No 123
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.16 E-value=5.2e-06 Score=84.76 Aligned_cols=100 Identities=14% Similarity=0.079 Sum_probs=64.1
Q ss_pred HHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcC--CHHHHHHHHHHHhccCCCCCcc--
Q 003773 26 LALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAF--EEIRIAKAILEVLDKSASSLGE-- 101 (796)
Q Consensus 26 ~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~-- 101 (796)
++++.+..-+.-+..+|+|++|+||||||+++|+....+ +|+.++||.+.... +..++++.+...+-.+......
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~ 236 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAER 236 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHH
Confidence 344443222334678899999999999999999985444 89999999988876 6677777776322222111111
Q ss_pred ----HHHHHHHHHHH-hCCceEEEEEeCCC
Q 003773 102 ----FQSLMQQTQES-IRGKKFFLVLDDVW 126 (796)
Q Consensus 102 ----~~~~~~~~~~~-l~~~~~LlvlDd~~ 126 (796)
....+...+.. ..+++++|++|++.
T Consensus 237 ~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 237 HVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 11112222222 36899999999993
No 124
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.16 E-value=7.7e-07 Score=84.97 Aligned_cols=130 Identities=18% Similarity=0.147 Sum_probs=78.3
Q ss_pred cccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCCC
Q 003773 582 YNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCEH 661 (796)
Q Consensus 582 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~ 661 (796)
.....|+.+++++|. ...+-++....|.++.|+++.|.+..+.. +..+++|+.|||++|. +..
T Consensus 281 dTWq~LtelDLS~N~---------------I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~ 343 (490)
T KOG1259|consen 281 DTWQELTELDLSGNL---------------ITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAE 343 (490)
T ss_pred chHhhhhhccccccc---------------hhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHh
Confidence 345567888888877 34555666677888888888888776544 6778888888888884 332
Q ss_pred CCc-cccc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeeccccccccccccccccccccCCCC
Q 003773 662 LPP-LGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMP 739 (796)
Q Consensus 662 lp~-l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~ 739 (796)
+.. -..| +.++|.|.++- ++.. .+ ++.+-+|..|+++++ +++...- -..++++|
T Consensus 344 ~~Gwh~KLGNIKtL~La~N~-iE~L----SG--------------L~KLYSLvnLDl~~N-~Ie~lde----V~~IG~LP 399 (490)
T KOG1259|consen 344 CVGWHLKLGNIKTLKLAQNK-IETL----SG--------------LRKLYSLVNLDLSSN-QIEELDE----VNHIGNLP 399 (490)
T ss_pred hhhhHhhhcCEeeeehhhhh-Hhhh----hh--------------hHhhhhheecccccc-chhhHHH----hccccccc
Confidence 222 2344 66777766532 1111 11 224445666655544 2322221 33466777
Q ss_pred ccceeeccCCCCC
Q 003773 740 RLSSLEIDCCSKL 752 (796)
Q Consensus 740 ~L~~L~l~~c~~l 752 (796)
.|+.|.+.+||..
T Consensus 400 CLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 400 CLETLRLTGNPLA 412 (490)
T ss_pred HHHHHhhcCCCcc
Confidence 7777777777543
No 125
>PRK05642 DNA replication initiation factor; Validated
Probab=98.16 E-value=2.3e-05 Score=77.02 Aligned_cols=156 Identities=13% Similarity=0.186 Sum_probs=91.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCc
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGK 116 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 116 (796)
...+.|+|..|+|||.|++++++... ..-..++|++..+ +... . ..+.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~--~~~~~v~y~~~~~------~~~~--------------~----~~~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE--QRGEPAVYLPLAE------LLDR--------------G----PELLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEeeHHH------HHhh--------------h----HHHHHhhhhC
Confidence 36789999999999999999887632 2223467776432 1111 0 1122223333
Q ss_pred eEEEEEeCCCCCC-ccChh-hHhhhccCC-CCCcEEEEEecchh--hh-------hccCccceEEccCCChHhHHHHHHH
Q 003773 117 KFFLVLDDVWDGD-FKKWD-PFFSCLKNG-HHESKILITTRDRS--VA-------LQMGSIDIISVKELGEEECWSLFKQ 184 (796)
Q Consensus 117 ~~LlvlDd~~~~~-~~~~~-~l~~~~~~~-~~gs~iiiTsr~~~--~~-------~~~~~~~~~~l~~l~~~e~~~lf~~ 184 (796)
. ++++||+.... ...|+ .+...+... ..|.+||+|++... .. ..+.....+++++++.++-.++++.
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 3 67889996421 23443 345444332 24567899887522 11 1122235789999999999999986
Q ss_pred HhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHHHHH
Q 003773 185 VAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLL 223 (796)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 223 (796)
++....- .--+++..-|++.+.|..-.+..+-..|
T Consensus 178 ka~~~~~----~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRGL----HLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcCC----CCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6643211 1225667778888888765555444333
No 126
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.14 E-value=2.6e-07 Score=96.05 Aligned_cols=124 Identities=30% Similarity=0.428 Sum_probs=93.1
Q ss_pred CCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCcccccccccccccCccccceEecCCCCccccch
Q 003773 395 FNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPE 474 (796)
Q Consensus 395 ~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~ 474 (796)
..+|..|.+++++ .+.....+..++ .--|++|-++ +|.++.+|..++.+.+|..|+.+.|.+..+|+
T Consensus 117 i~~L~~lt~l~ls---~NqlS~lp~~lC--~lpLkvli~s--------NNkl~~lp~~ig~~~tl~~ld~s~nei~slps 183 (722)
T KOG0532|consen 117 ICNLEALTFLDLS---SNQLSHLPDGLC--DLPLKVLIVS--------NNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPS 183 (722)
T ss_pred hhhhhHHHHhhhc---cchhhcCChhhh--cCcceeEEEe--------cCccccCCcccccchhHHHhhhhhhhhhhchH
Confidence 4566666666665 233333333322 2347888888 88888888888888888888888888888888
Q ss_pred hhhccCCccEeeccccccccccchhhccccCCCeeecCCccccccCcccCCCCCCcccCC
Q 003773 475 TLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTEKLKYLPIGISRLTSLRTLE 534 (796)
Q Consensus 475 ~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 534 (796)
.+++|..|+.|.++.|. +..+|..+..| .|..||++.| ++..+|-.|.+|+.||+|.
T Consensus 184 ql~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfScN-kis~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 184 QLGYLTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFSCN-KISYLPVDFRKMRHLQVLQ 240 (722)
T ss_pred HhhhHHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeecccC-ceeecchhhhhhhhheeee
Confidence 88888888888888866 77788877744 4788888777 7788888888888888885
No 127
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.13 E-value=2.1e-05 Score=83.44 Aligned_cols=174 Identities=17% Similarity=0.101 Sum_probs=94.4
Q ss_pred cCcccccHHHHHHHhcccC------------CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCH
Q 003773 14 KLQIEGLDDDNTLALASSE------------QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEE 81 (796)
Q Consensus 14 ~~~~vGr~~~~~~l~~~~~------------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 81 (796)
..+++|+++.++.+.+... +-...+-+.++|++|+|||++|+++++. ....|- .+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~~-----~v~~---- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATFI-----RVVG---- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCEE-----ecch----
Confidence 3468999999985544321 0123456889999999999999999987 333331 1111
Q ss_pred HHHHHHHHHHhccCCCCCccHHHHHHHHHHH-hCCceEEEEEeCCCCCC-----------ccChhhHhhh---ccC--CC
Q 003773 82 IRIAKAILEVLDKSASSLGEFQSLMQQTQES-IRGKKFFLVLDDVWDGD-----------FKKWDPFFSC---LKN--GH 144 (796)
Q Consensus 82 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~-----------~~~~~~l~~~---~~~--~~ 144 (796)
..+... ..+ ........+.+. -...+.+|++|+++... ......+... +.. ..
T Consensus 190 ~~l~~~---~~g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 190 SELVRK---YIG-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred HHHHHH---hhh-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 111111 010 011111222222 23467899999985421 0011122222 221 12
Q ss_pred CCcEEEEEecchh-----hhhccCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCc
Q 003773 145 HESKILITTRDRS-----VALQMGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLP 213 (796)
Q Consensus 145 ~gs~iiiTsr~~~-----~~~~~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 213 (796)
.+.+||.||...+ +.+.......+++...+.++..++|+.++.+... ..... ...+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l-~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL-AEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC-CccCC----HHHHHHHcCCCC
Confidence 3567888887532 2211122457899999999999999887743221 11112 456777777754
No 128
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.13 E-value=3.4e-05 Score=89.82 Aligned_cols=184 Identities=14% Similarity=0.072 Sum_probs=95.3
Q ss_pred ccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc----cCCeEE-EEEeCCcCCHHHHHHH
Q 003773 13 LKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKR----KFDIVI-WVCVSDAFEEIRIAKA 87 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~-wv~~~~~~~~~~~~~~ 87 (796)
.-+.+|||++++.++++.+.... ..-+.++|++|+||||+|+.++++..... ..+..+ .++.+.-.
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~r~~-~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~-------- 255 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLRRR-QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQ-------- 255 (852)
T ss_pred CCCcccCCHHHHHHHHHHHhcCC-cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhh--------
Confidence 34579999999998876543232 23456999999999999999988631111 112222 23332100
Q ss_pred HHHHhccCCCCCccHHHHHHHHHHHh--CCceEEEEEeCCCCCC-------ccChh-hHhhhccCCCCCcEEEEEecchh
Q 003773 88 ILEVLDKSASSLGEFQSLMQQTQESI--RGKKFFLVLDDVWDGD-------FKKWD-PFFSCLKNGHHESKILITTRDRS 157 (796)
Q Consensus 88 i~~~l~~~~~~~~~~~~~~~~~~~~l--~~~~~LlvlDd~~~~~-------~~~~~-~l~~~~~~~~~gs~iiiTsr~~~ 157 (796)
.......+..+.++.+.+.. .+++.++++|++.... ..+.. .+.+.+.. ..-++|-||...+
T Consensus 256 ------ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~IgaTT~~e 327 (852)
T TIGR03345 256 ------AGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAATTWAE 327 (852)
T ss_pred ------cccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEecCHHH
Confidence 00011112222222222222 2568999999985421 11111 12222222 2345666666533
Q ss_pred hhhc-------cCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCc
Q 003773 158 VALQ-------MGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLP 213 (796)
Q Consensus 158 ~~~~-------~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 213 (796)
.... ......+.+++++.+++.++++...-.-.....-.-..+....+++.+.++.
T Consensus 328 ~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 328 YKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred HhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 2111 1224689999999999999975443111110111112344556666665543
No 129
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.11 E-value=8.7e-05 Score=73.28 Aligned_cols=201 Identities=17% Similarity=0.112 Sum_probs=120.1
Q ss_pred ccCcccccHHHHH------HHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc----cCCeEEEEEeCCcCCHH
Q 003773 13 LKLQIEGLDDDNT------LALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKR----KFDIVIWVCVSDAFEEI 82 (796)
Q Consensus 13 ~~~~~vGr~~~~~------~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~ 82 (796)
..+.+||-....+ .|+.... ....+-+.|+|.+|.|||++++++....-... .--.|+.|......+..
T Consensus 32 ~~~rWIgY~~A~~~L~~L~~Ll~~P~-~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 32 RADRWIGYPRAKEALDRLEELLEYPK-RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred hcCCeecCHHHHHHHHHHHHHHhCCc-ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 4667888877776 3333221 22345699999999999999999987521111 11147788888889999
Q ss_pred HHHHHHHHHhccCCCCCccHHHHHHHHHHHhCC-ceEEEEEeCCCCC---C---ccChhhHhhhccCCCCCcEEEEEecc
Q 003773 83 RIAKAILEVLDKSASSLGEFQSLMQQTQESIRG-KKFFLVLDDVWDG---D---FKKWDPFFSCLKNGHHESKILITTRD 155 (796)
Q Consensus 83 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~-~~~LlvlDd~~~~---~---~~~~~~l~~~~~~~~~gs~iiiTsr~ 155 (796)
.+...|+++++...............+.+.++. +--+||+|++.+. . +.+.-.....+.+.-.=+-|.+-|++
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 999999999998776666666666665566653 4558899999541 1 12222223333332233445555554
Q ss_pred hhhhhcc-----CccceEEccCCCh-HhHHHHHHHHhhCCCCC-CCCcchhHHHHHHHHhcCCCch
Q 003773 156 RSVALQM-----GSIDIISVKELGE-EECWSLFKQVAFLGRSF-EDCEKLEPIGRKIACKCKGLPL 214 (796)
Q Consensus 156 ~~~~~~~-----~~~~~~~l~~l~~-~e~~~lf~~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~PL 214 (796)
-..+-.. .-...+.+..+.. +|...|+......-+-. ...-...++++.|...++|+.=
T Consensus 191 A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG 256 (302)
T PF05621_consen 191 AYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG 256 (302)
T ss_pred HHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH
Confidence 2211111 1145677777765 45555654432111111 1112336788999999999763
No 130
>PLN03150 hypothetical protein; Provisional
Probab=98.09 E-value=6.1e-06 Score=93.49 Aligned_cols=108 Identities=23% Similarity=0.297 Sum_probs=85.7
Q ss_pred EEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCcccccccccccccCccccceEecCCCCcc-ccchhhhcc
Q 003773 401 LLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIE-RLPETLCEL 479 (796)
Q Consensus 401 L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l 479 (796)
+..+++. .+.+.+.++. .+..+++|+.|+|++ +.....+|..++.+++|++|+|++|.+. .+|..+++|
T Consensus 420 v~~L~L~--~n~L~g~ip~-~i~~L~~L~~L~Ls~-------N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L 489 (623)
T PLN03150 420 IDGLGLD--NQGLRGFIPN-DISKLRHLQSINLSG-------NSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489 (623)
T ss_pred EEEEECC--CCCccccCCH-HHhCCCCCCEEECCC-------CcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcC
Confidence 4555665 2334444444 488999999999994 4444588999999999999999999988 789999999
Q ss_pred CCccEeeccccccccccchhhccc-cCCCeeecCCccccc
Q 003773 480 YNLQKLAVRWCTNLRELPAGIGKL-MNMRSLMNGQTEKLK 518 (796)
Q Consensus 480 ~~L~~L~l~~~~~~~~lp~~~~~l-~~L~~L~l~~~~~~~ 518 (796)
++|++|+|++|.....+|..++.+ .++..+++.+|..+.
T Consensus 490 ~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCCCEEECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence 999999999999778999988764 567788888875443
No 131
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.06 E-value=1e-05 Score=83.20 Aligned_cols=89 Identities=13% Similarity=0.083 Sum_probs=60.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCc--CCHHHHHHHHHHHhccCCCCCc-----cH-HHHHHH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDA--FEEIRIAKAILEVLDKSASSLG-----EF-QSLMQQ 108 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~-----~~-~~~~~~ 108 (796)
-+.++|+|++|+|||||++.+++.... ++|+..+||.+..+ .++.++++.+...+-....... .. ....+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 367899999999999999999987433 37999999998866 7888999988544322211111 11 111222
Q ss_pred HHHH-hCCceEEEEEeCCC
Q 003773 109 TQES-IRGKKFFLVLDDVW 126 (796)
Q Consensus 109 ~~~~-l~~~~~LlvlDd~~ 126 (796)
.++. -.+++.+|++|++.
T Consensus 247 Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHcCCCeEEEEEChh
Confidence 2222 35899999999994
No 132
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.03 E-value=0.00011 Score=79.46 Aligned_cols=161 Identities=14% Similarity=0.104 Sum_probs=93.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccC-CeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKF-DIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRG 115 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 115 (796)
...+.|+|.+|+|||+||+++++.... ... ..++|++. .++..++...+... ..+ .+.+....
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~-~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~----~f~~~~~~ 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITS------EKFLNDLVDSMKEG-----KLN----EFREKYRK 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHH----HHHHHHHh
Confidence 446999999999999999999987322 222 24677754 34555555544321 111 22333333
Q ss_pred ceEEEEEeCCCCCC-ccCh-hhHhhhccC-CCCCcEEEEEec-chhh--------hhccCccceEEccCCChHhHHHHHH
Q 003773 116 KKFFLVLDDVWDGD-FKKW-DPFFSCLKN-GHHESKILITTR-DRSV--------ALQMGSIDIISVKELGEEECWSLFK 183 (796)
Q Consensus 116 ~~~LlvlDd~~~~~-~~~~-~~l~~~~~~-~~~gs~iiiTsr-~~~~--------~~~~~~~~~~~l~~l~~~e~~~lf~ 183 (796)
+.-+|++||++... ...+ +.+...+.. ...|..||+||. ...- ...+...-.+++++.+.+.-.++++
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~ 273 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIAR 273 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHH
Confidence 45589999996421 1111 233333321 123446888885 3221 1112334478899999999999998
Q ss_pred HHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHH
Q 003773 184 QVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAK 217 (796)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 217 (796)
+.+...... --++++.-|++.+.|.--.+.
T Consensus 274 ~~~~~~~~~----l~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 274 KMLEIEHGE----LPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHhcCCC----CCHHHHHHHHhccccCHHHHH
Confidence 887432211 225667888888888654444
No 133
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=3.5e-07 Score=87.29 Aligned_cols=81 Identities=19% Similarity=0.230 Sum_probs=52.2
Q ss_pred ccceeeecccccCCCcccccc--cccccccCccccceEecCCCCcc-ccchhhhccCCccEeeccccccccccc--hhhc
Q 003773 427 CLRALVIRQWFVPLDDQNFIR--EIPENIGKLIHLKYLNLSELCIE-RLPETLCELYNLQKLAVRWCTNLRELP--AGIG 501 (796)
Q Consensus 427 ~L~~L~l~~~~~~~~~~~~~~--~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~lp--~~~~ 501 (796)
.|++|||+ +..++ .+..-++.|.+|+.|++.++.+. .+-..|.+=.+|+.|+|+.|..+.+.. --+.
T Consensus 186 Rlq~lDLS--------~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~ 257 (419)
T KOG2120|consen 186 RLQHLDLS--------NSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLS 257 (419)
T ss_pred hhHHhhcc--------hhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHH
Confidence 57788887 44433 23344566777787877777765 444556666777788887777654432 2356
Q ss_pred cccCCCeeecCCcc
Q 003773 502 KLMNMRSLMNGQTE 515 (796)
Q Consensus 502 ~l~~L~~L~l~~~~ 515 (796)
+++.|..|+++.|.
T Consensus 258 scs~L~~LNlsWc~ 271 (419)
T KOG2120|consen 258 SCSRLDELNLSWCF 271 (419)
T ss_pred hhhhHhhcCchHhh
Confidence 67777777777773
No 134
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.97 E-value=0.00047 Score=65.55 Aligned_cols=182 Identities=18% Similarity=0.216 Sum_probs=106.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHh-
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESI- 113 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l- 113 (796)
.+.+++.++|.-|.|||.+++++... ..+.=-.++.+ -....+...+...+...+... ...........+.+.+
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s--~~~d~~~~v~i-~~~~~s~~~~~~ai~~~l~~~--p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLAS--LNEDQVAVVVI-DKPTLSDATLLEAIVADLESQ--PKVNVNAVLEQIDRELA 123 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHh--cCCCceEEEEe-cCcchhHHHHHHHHHHHhccC--ccchhHHHHHHHHHHHH
Confidence 34569999999999999999954433 22111112222 223456667777777777662 2233333333333322
Q ss_pred ----CCce-EEEEEeCCCCCCccChhhHhhhccCCCCCc---EEEEEecch-------hhhhccC-ccce-EEccCCChH
Q 003773 114 ----RGKK-FFLVLDDVWDGDFKKWDPFFSCLKNGHHES---KILITTRDR-------SVALQMG-SIDI-ISVKELGEE 176 (796)
Q Consensus 114 ----~~~~-~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs---~iiiTsr~~-------~~~~~~~-~~~~-~~l~~l~~~ 176 (796)
++++ ..+++|+......+..+.+.........++ +|+..-..+ .+.+... .... |++.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 5677 899999996655455555444332222222 244433221 0111111 1233 999999999
Q ss_pred hHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHHHH
Q 003773 177 ECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNL 222 (796)
Q Consensus 177 e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~ 222 (796)
+...+++.+..+.... .+---.+....|.....|.|.+++.++..
T Consensus 204 ~t~~yl~~~Le~a~~~-~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 204 ETGLYLRHRLEGAGLP-EPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHHhccCCC-cccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 9999988876544221 22222456788999999999999988754
No 135
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.96 E-value=0.00015 Score=78.30 Aligned_cols=162 Identities=15% Similarity=0.141 Sum_probs=92.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCc
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGK 116 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 116 (796)
...+.|+|+.|+|||+|++++++....+..=..++|+++ ..+...+...+... ..+. +.+.+++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~----~~~~~~~- 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEE----FKEKYRS- 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHH----HHHHHHh-
Confidence 356889999999999999999987432211124666643 23344444444321 1222 2223332
Q ss_pred eEEEEEeCCCCCCcc-Ch-hhHhhhccCC-CCCcEEEEEecc-hh--------hhhccCccceEEccCCChHhHHHHHHH
Q 003773 117 KFFLVLDDVWDGDFK-KW-DPFFSCLKNG-HHESKILITTRD-RS--------VALQMGSIDIISVKELGEEECWSLFKQ 184 (796)
Q Consensus 117 ~~LlvlDd~~~~~~~-~~-~~l~~~~~~~-~~gs~iiiTsr~-~~--------~~~~~~~~~~~~l~~l~~~e~~~lf~~ 184 (796)
.-+|++||++..... .+ +.+...+... ..+..+|+|+.. .. +...+.....+++++.+.++-.+++++
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHH
Confidence 237889999653211 11 2233333221 234568888764 11 111222234789999999999999998
Q ss_pred HhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHH
Q 003773 185 VAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKV 218 (796)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 218 (796)
.+...+. .--+++...|++.+.|..-.+.-
T Consensus 280 ~~~~~~~----~l~~e~l~~ia~~~~~~~r~l~~ 309 (405)
T TIGR00362 280 KAEEEGL----ELPDEVLEFIAKNIRSNVRELEG 309 (405)
T ss_pred HHHHcCC----CCCHHHHHHHHHhcCCCHHHHHH
Confidence 8743222 12256677788888887665443
No 136
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.96 E-value=0.00021 Score=73.14 Aligned_cols=195 Identities=14% Similarity=0.127 Sum_probs=112.8
Q ss_pred CcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccc--------------ccCCeEEEEEeCCcCC
Q 003773 15 LQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVK--------------RKFDIVIWVCVSDAFE 80 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--------------~~f~~~~wv~~~~~~~ 80 (796)
.+++|.++.++.|......+.-.....++|+.|+||+++|.++++..-.. .|-| +.|+.-....+
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEecccccc
Confidence 46899999999888776544445799999999999999998877652111 1222 33442210000
Q ss_pred HHHHHHHHHHHhcc--CCCCCccHHHHHHHHHHHh-----CCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEe
Q 003773 81 EIRIAKAILEVLDK--SASSLGEFQSLMQQTQESI-----RGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITT 153 (796)
Q Consensus 81 ~~~~~~~i~~~l~~--~~~~~~~~~~~~~~~~~~l-----~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTs 153 (796)
-..+-..-++..+. .......+++. +.+.+.+ .+++-++|+|+++.........+...+..-. .+.+|++|
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~ 160 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIA 160 (314)
T ss_pred ccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEE
Confidence 00000111111110 01111122222 2333333 3667799999997766666777877776544 44566555
Q ss_pred cch-hhhhcc-CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHH
Q 003773 154 RDR-SVALQM-GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVI 219 (796)
Q Consensus 154 r~~-~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 219 (796)
.+. .+...+ .....+.+.+++.++..+.+.+..... ........++..++|.|.....+
T Consensus 161 ~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~-------~~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 161 PSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE-------ILNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred CChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc-------cchhHHHHHHHHcCCCHHHHHHH
Confidence 543 332222 235799999999999999998764211 10111357899999999655443
No 137
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=5.7e-07 Score=85.89 Aligned_cols=159 Identities=21% Similarity=0.260 Sum_probs=111.3
Q ss_pred ccccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCC---CCchhhhccCCcEEEEcCCC
Q 003773 581 LYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNI---FPKWLTLLTNLRELKLFSCV 657 (796)
Q Consensus 581 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~---~p~~~~~l~~L~~L~L~~~~ 657 (796)
++.|.+|+.|++.++.+ ++.+...+....+|+.|+++.+.+.. ..--+.+++.|..|+|+.|.
T Consensus 206 Ls~C~kLk~lSlEg~~L--------------dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~ 271 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRL--------------DDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCF 271 (419)
T ss_pred HHHHHhhhhcccccccc--------------CcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhh
Confidence 56788888888887764 45677788888899999999887643 12234489999999999996
Q ss_pred CCCCCCc--cccc--cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeecccccccccccccccccc
Q 003773 658 NCEHLPP--LGKL--LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKE 733 (796)
Q Consensus 658 ~~~~lp~--l~~l--~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~ 733 (796)
.....-. .... +|..|++++|...-... .... ....+|+|..|++++|..|+.-. ..
T Consensus 272 l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s-h~~t-------------L~~rcp~l~~LDLSD~v~l~~~~-----~~ 332 (419)
T KOG2120|consen 272 LFTEKVTVAVAHISETLTQLNLSGYRRNLQKS-HLST-------------LVRRCPNLVHLDLSDSVMLKNDC-----FQ 332 (419)
T ss_pred ccchhhhHHHhhhchhhhhhhhhhhHhhhhhh-HHHH-------------HHHhCCceeeeccccccccCchH-----HH
Confidence 5443211 2222 78889998875321111 1100 12478999999999998887633 34
Q ss_pred ccCCCCccceeeccCCCCCCCCCc---CCCCCCCccEEEEcCCC
Q 003773 734 NISIMPRLSSLEIDCCSKLNVLPD---HLLQTTTLQELSIRGCP 774 (796)
Q Consensus 734 ~~~~l~~L~~L~l~~c~~l~~lp~---~~~~l~~L~~L~l~~~~ 774 (796)
.+..|+.|++|.++.|..+ +|. .+...|+|..|++.||-
T Consensus 333 ~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 333 EFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 5668999999999999644 333 24567999999998884
No 138
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.95 E-value=9.6e-06 Score=55.34 Aligned_cols=39 Identities=31% Similarity=0.409 Sum_probs=24.9
Q ss_pred cccceEecCCCCccccchhhhccCCccEeecccccccccc
Q 003773 457 IHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLREL 496 (796)
Q Consensus 457 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l 496 (796)
++|++|++++|.|+.+|..+++|++|++|++++|. +..+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCC
Confidence 35677777777777777667777777777777765 4433
No 139
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.94 E-value=4.9e-05 Score=70.28 Aligned_cols=115 Identities=15% Similarity=0.064 Sum_probs=64.6
Q ss_pred ccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHH
Q 003773 9 TTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAI 88 (796)
Q Consensus 9 ~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 88 (796)
+.|..-.++||.|+.++.+.--. .+++.+-+.|.||+|+||||-+..+++..--...=+.++-...+++....-+...|
T Consensus 21 YrP~~l~dIVGNe~tv~rl~via-~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~I 99 (333)
T KOG0991|consen 21 YRPSVLQDIVGNEDTVERLSVIA-KEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKI 99 (333)
T ss_pred hCchHHHHhhCCHHHHHHHHHHH-HcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHH
Confidence 34666778999999999543222 23566778899999999999988887762211122334444444433322222222
Q ss_pred HHHhccCCCCCccHHHHHHHHHHHh-CCceEEEEEeCCCCCCccChhhHhhh
Q 003773 89 LEVLDKSASSLGEFQSLMQQTQESI-RGKKFFLVLDDVWDGDFKKWDPFFSC 139 (796)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~LlvlDd~~~~~~~~~~~l~~~ 139 (796)
-....... .+ .++.-++|||..++......+++.+.
T Consensus 100 K~FAQ~kv---------------~lp~grhKIiILDEADSMT~gAQQAlRRt 136 (333)
T KOG0991|consen 100 KMFAQKKV---------------TLPPGRHKIIILDEADSMTAGAQQALRRT 136 (333)
T ss_pred HHHHHhhc---------------cCCCCceeEEEeeccchhhhHHHHHHHHH
Confidence 11110000 01 24556889999976554444444444
No 140
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.93 E-value=9.6e-05 Score=85.60 Aligned_cols=156 Identities=15% Similarity=0.151 Sum_probs=85.9
Q ss_pred cCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc---cC-CeEEE-EEeCCcCCHHHHHHHH
Q 003773 14 KLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKR---KF-DIVIW-VCVSDAFEEIRIAKAI 88 (796)
Q Consensus 14 ~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~f-~~~~w-v~~~~~~~~~~~~~~i 88 (796)
-+.++||+++++.+++.+... ...-+.++|++|+|||++|+.++++..... .+ +..+| +++ ..+..
T Consensus 181 l~~~igr~~ei~~~~~~L~~~-~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~------~~l~a-- 251 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCRR-KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM------GSLLA-- 251 (731)
T ss_pred CCcccCcHHHHHHHHHHHhcC-CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH------HHHhh--
Confidence 357999999999877655423 233456999999999999999988732111 11 23333 221 11110
Q ss_pred HHHhccCCCCCccHHHHHHHHHHHh-CCceEEEEEeCCCCCC---------ccChhhHhhhccCCCCCcEEEEEecchhh
Q 003773 89 LEVLDKSASSLGEFQSLMQQTQESI-RGKKFFLVLDDVWDGD---------FKKWDPFFSCLKNGHHESKILITTRDRSV 158 (796)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~LlvlDd~~~~~---------~~~~~~l~~~~~~~~~gs~iiiTsr~~~~ 158 (796)
......+.++.++.+.+.+ ..++.+|++|+++.-. .+..+.+.+.+.. ..-++|-+|...+.
T Consensus 252 ------~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaTt~~e~ 323 (731)
T TIGR02639 252 ------GTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGSTTYEEY 323 (731)
T ss_pred ------hccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEecCHHHH
Confidence 0011123333334443333 3457899999995311 1111223332322 12345555554222
Q ss_pred hh------cc-CccceEEccCCChHhHHHHHHHHh
Q 003773 159 AL------QM-GSIDIISVKELGEEECWSLFKQVA 186 (796)
Q Consensus 159 ~~------~~-~~~~~~~l~~l~~~e~~~lf~~~~ 186 (796)
.. .+ ...+.++++.++.++..++++...
T Consensus 324 ~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 324 KNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 11 11 124589999999999999998654
No 141
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.92 E-value=0.00012 Score=73.52 Aligned_cols=136 Identities=13% Similarity=0.083 Sum_probs=67.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRG 115 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 115 (796)
...-+.++|++|+||||+|+.+++.......-....++.++. .++.. ...+. ........+. ...
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~----~~l~~---~~~g~------~~~~~~~~~~-~a~- 105 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER----ADLVG---EYIGH------TAQKTREVIK-KAL- 105 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----HHhhh---hhccc------hHHHHHHHHH-hcc-
Confidence 345678999999999999999987521111111111222211 11111 01110 0111112222 212
Q ss_pred ceEEEEEeCCCCCC--------ccChhhHhhhccCCCCCcEEEEEecchhhhh------cc--CccceEEccCCChHhHH
Q 003773 116 KKFFLVLDDVWDGD--------FKKWDPFFSCLKNGHHESKILITTRDRSVAL------QM--GSIDIISVKELGEEECW 179 (796)
Q Consensus 116 ~~~LlvlDd~~~~~--------~~~~~~l~~~~~~~~~gs~iiiTsr~~~~~~------~~--~~~~~~~l~~l~~~e~~ 179 (796)
.-+|++|+++.-. .+..+.+...+........+|+++...+... .. .....+++++++.+|-.
T Consensus 106 -~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~ 184 (261)
T TIGR02881 106 -GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELM 184 (261)
T ss_pred -CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHH
Confidence 2488999996421 1122334444433333344555554432211 11 11246889999999999
Q ss_pred HHHHHHhh
Q 003773 180 SLFKQVAF 187 (796)
Q Consensus 180 ~lf~~~~~ 187 (796)
+++.+.+.
T Consensus 185 ~Il~~~~~ 192 (261)
T TIGR02881 185 EIAERMVK 192 (261)
T ss_pred HHHHHHHH
Confidence 99987764
No 142
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.86 E-value=0.00012 Score=77.79 Aligned_cols=173 Identities=18% Similarity=0.118 Sum_probs=92.1
Q ss_pred CcccccHHHHHHHhccc----C--------CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHH
Q 003773 15 LQIEGLDDDNTLALASS----E--------QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEI 82 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~~----~--------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 82 (796)
+++.|+++.++.+.+.. . +-...+-|.++|++|+|||++|+++++. ....| +.+..+
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~~---i~v~~~------ 199 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF---IRVVGS------ 199 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCCE---EEeehH------
Confidence 45889999998544321 0 1133467889999999999999999986 32222 112111
Q ss_pred HHHHHHHHHhccCCCCCccHHHHHHHHHHH-hCCceEEEEEeCCCCCC-----------ccChhhHhhhc---cC--CCC
Q 003773 83 RIAKAILEVLDKSASSLGEFQSLMQQTQES-IRGKKFFLVLDDVWDGD-----------FKKWDPFFSCL---KN--GHH 145 (796)
Q Consensus 83 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~-----------~~~~~~l~~~~---~~--~~~ 145 (796)
.+. ....+ +.......+.+. -...+.+|++|+++... .+....+...+ .. ...
T Consensus 200 ~l~----~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 200 ELV----QKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred HHh----Hhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 111 11100 111122222222 23467899999995420 01111222222 11 123
Q ss_pred CcEEEEEecchhhhhc-----cCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCc
Q 003773 146 ESKILITTRDRSVALQ-----MGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLP 213 (796)
Q Consensus 146 gs~iiiTsr~~~~~~~-----~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 213 (796)
+..||.||...+.... ......+++...+.++..++|+.+..+... ..... ...+++.+.|.-
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDVD----LEELAELTEGAS 337 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcCC----HHHHHHHcCCCC
Confidence 4567777765432211 122457999999999999999887643221 11122 345666676644
No 143
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.85 E-value=3.8e-05 Score=80.51 Aligned_cols=120 Identities=13% Similarity=0.090 Sum_probs=74.4
Q ss_pred cCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhc
Q 003773 14 KLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLD 93 (796)
Q Consensus 14 ~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 93 (796)
..++++.++.++.++..+. ..+.|.++|++|+|||++|+++++.......|+.+.||.++...+..++...+.-
T Consensus 174 l~d~~i~e~~le~l~~~L~---~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP--- 247 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRP--- 247 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCC---
Confidence 4457888888887776654 2346778999999999999999987544567888999999988776665432210
Q ss_pred cCCCCCccHH-HHHHHHHHHh--CCceEEEEEeCCCCCCccC-hhhHhhhc
Q 003773 94 KSASSLGEFQ-SLMQQTQESI--RGKKFFLVLDDVWDGDFKK-WDPFFSCL 140 (796)
Q Consensus 94 ~~~~~~~~~~-~~~~~~~~~l--~~~~~LlvlDd~~~~~~~~-~~~l~~~~ 140 (796)
......-.. -..+.+.+.. .++++++|+|++...+.+. +..+...+
T Consensus 248 -~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lL 297 (459)
T PRK11331 248 -NGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLM 297 (459)
T ss_pred -CCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhc
Confidence 000000001 1112222222 2468999999996654333 33444433
No 144
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.84 E-value=0.00011 Score=86.17 Aligned_cols=155 Identities=15% Similarity=0.138 Sum_probs=85.4
Q ss_pred CcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc---cC-CeEEEEEeCCcCCHHHHHHHHHH
Q 003773 15 LQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKR---KF-DIVIWVCVSDAFEEIRIAKAILE 90 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~f-~~~~wv~~~~~~~~~~~~~~i~~ 90 (796)
+.++||+++++.+++.+..... .-+.++|++|+|||++|..++.+..... .. +..+|. + +...+.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~-~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~----- 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTK-NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL----- 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHccccc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh-----
Confidence 4689999999988877653333 3456999999999999999988632110 11 234442 1 111111
Q ss_pred HhccCCCCCccHHHHHHHHHHHh-CCceEEEEEeCCCCC-------CccChhhHhh-hccCCCCCcEEEEEecchhhhhc
Q 003773 91 VLDKSASSLGEFQSLMQQTQESI-RGKKFFLVLDDVWDG-------DFKKWDPFFS-CLKNGHHESKILITTRDRSVALQ 161 (796)
Q Consensus 91 ~l~~~~~~~~~~~~~~~~~~~~l-~~~~~LlvlDd~~~~-------~~~~~~~l~~-~~~~~~~gs~iiiTsr~~~~~~~ 161 (796)
.+ .....+.++.+..+.+.+ ..++.+|++|+++.- .......+.. .+.. ..-++|.+|...+....
T Consensus 248 --ag-~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt~~ey~~~ 322 (821)
T CHL00095 248 --AG-TKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATTLDEYRKH 322 (821)
T ss_pred --cc-CCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCCHHHHHHH
Confidence 11 111233444444443333 356899999999431 0011222222 2221 22456666665443211
Q ss_pred -------cCccceEEccCCChHhHHHHHHHH
Q 003773 162 -------MGSIDIISVKELGEEECWSLFKQV 185 (796)
Q Consensus 162 -------~~~~~~~~l~~l~~~e~~~lf~~~ 185 (796)
......+++...+.++...+++..
T Consensus 323 ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 323 IEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 122457888888988988887643
No 145
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.83 E-value=0.00022 Score=77.95 Aligned_cols=161 Identities=16% Similarity=0.135 Sum_probs=93.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCc
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGK 116 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 116 (796)
...+.|+|++|+|||+|++++++....+..--.+++++.. .+...+...+... .. ..+.+.++ +
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~----~~~~~~~~-~ 211 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TM----EEFKEKYR-S 211 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cH----HHHHHHHh-c
Confidence 4568999999999999999999884322212346666543 3333344443221 11 22233333 2
Q ss_pred eEEEEEeCCCCCCcc--ChhhHhhhccC-CCCCcEEEEEecch--h-------hhhccCccceEEccCCChHhHHHHHHH
Q 003773 117 KFFLVLDDVWDGDFK--KWDPFFSCLKN-GHHESKILITTRDR--S-------VALQMGSIDIISVKELGEEECWSLFKQ 184 (796)
Q Consensus 117 ~~LlvlDd~~~~~~~--~~~~l~~~~~~-~~~gs~iiiTsr~~--~-------~~~~~~~~~~~~l~~l~~~e~~~lf~~ 184 (796)
.-+|++||++..... ..+.+...+.. ...|..||+|+... . +...+.....+++++.+.++-.+++++
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHH
Confidence 347889999652111 11233333221 12344588887642 1 122233345799999999999999998
Q ss_pred HhhCCCCCCCCcchhHHHHHHHHhcCCCchhHH
Q 003773 185 VAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAK 217 (796)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 217 (796)
.+...+. .--+++..-|++.+.|..-.+.
T Consensus 292 ~~~~~~~----~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 292 KAEEEGI----DLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHcCC----CCCHHHHHHHHcCcCCCHHHHH
Confidence 8743211 1225668888888888776544
No 146
>CHL00181 cbbX CbbX; Provisional
Probab=97.83 E-value=0.00044 Score=69.99 Aligned_cols=134 Identities=11% Similarity=0.031 Sum_probs=70.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceE
Q 003773 39 IISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKF 118 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 118 (796)
.+.++|++|+|||++|+.+++.....+.-...-|+.++ ...+ .....+.. .......+.+ .. .-
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~----~~~l----~~~~~g~~-----~~~~~~~l~~-a~--gg 124 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT----RDDL----VGQYIGHT-----APKTKEVLKK-AM--GG 124 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec----HHHH----HHHHhccc-----hHHHHHHHHH-cc--CC
Confidence 47899999999999999997752111111111133333 1122 22111111 0111122222 22 24
Q ss_pred EEEEeCCCCC---------CccChhhHhhhccCCCCCcEEEEEecchhhhhcc--------CccceEEccCCChHhHHHH
Q 003773 119 FLVLDDVWDG---------DFKKWDPFFSCLKNGHHESKILITTRDRSVALQM--------GSIDIISVKELGEEECWSL 181 (796)
Q Consensus 119 LlvlDd~~~~---------~~~~~~~l~~~~~~~~~gs~iiiTsr~~~~~~~~--------~~~~~~~l~~l~~~e~~~l 181 (796)
+|++|+++.- ..+..+.+...+.......+||+++....+.... .....+++++++.+|..++
T Consensus 125 VLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I 204 (287)
T CHL00181 125 VLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQI 204 (287)
T ss_pred EEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHH
Confidence 8999999642 1112233444444444556677776543321111 1235899999999999999
Q ss_pred HHHHhhC
Q 003773 182 FKQVAFL 188 (796)
Q Consensus 182 f~~~~~~ 188 (796)
+...+..
T Consensus 205 ~~~~l~~ 211 (287)
T CHL00181 205 AKIMLEE 211 (287)
T ss_pred HHHHHHH
Confidence 8887743
No 147
>PRK06620 hypothetical protein; Validated
Probab=97.83 E-value=0.0002 Score=69.09 Aligned_cols=135 Identities=15% Similarity=0.084 Sum_probs=77.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCce
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKK 117 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 117 (796)
+.+.|||++|+|||+|++++++... . .++. ..+. . + +..+ ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~----~-----------------~-------~~~~-~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF----N-----------------E-------EILE-KY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh----c-----------------h-------hHHh-cC
Confidence 6789999999999999998877621 1 1211 0000 0 0 0011 23
Q ss_pred EEEEEeCCCCCCccChhhHhhhccC-CCCCcEEEEEecchhh-------hhccCccceEEccCCChHhHHHHHHHHhhCC
Q 003773 118 FFLVLDDVWDGDFKKWDPFFSCLKN-GHHESKILITTRDRSV-------ALQMGSIDIISVKELGEEECWSLFKQVAFLG 189 (796)
Q Consensus 118 ~LlvlDd~~~~~~~~~~~l~~~~~~-~~~gs~iiiTsr~~~~-------~~~~~~~~~~~l~~l~~~e~~~lf~~~~~~~ 189 (796)
-++++||++.-.. ..+...+.. ...|..||+|++.... ...+...-.+++++++.++-.+++++.+...
T Consensus 87 d~lliDdi~~~~~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 87 NAFIIEDIENWQE---PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CEEEEeccccchH---HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 4688899953211 123332221 1345679999885322 1222334489999999999888888776421
Q ss_pred CCCCCCcchhHHHHHHHHhcCCCchhHH
Q 003773 190 RSFEDCEKLEPIGRKIACKCKGLPLAAK 217 (796)
Q Consensus 190 ~~~~~~~~~~~~~~~i~~~~~g~PLal~ 217 (796)
+- .--+++.+-|++.+.|.--.+.
T Consensus 164 ~l----~l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 164 SV----TISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred CC----CCCHHHHHHHHHHccCCHHHHH
Confidence 11 1225567777777777554433
No 148
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.82 E-value=4.5e-05 Score=79.00 Aligned_cols=65 Identities=23% Similarity=0.303 Sum_probs=42.0
Q ss_pred cCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhccccCCCeeecCCccccccCccc
Q 003773 454 GKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTEKLKYLPIG 523 (796)
Q Consensus 454 ~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~ 523 (796)
..+.++++|++++|.++.+|. -..+|+.|.+++|..+..+|..+ ..+|++|++++|..+..+|..
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc
Confidence 345667777777777777762 12357777777777776666544 356777777777666666654
No 149
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.82 E-value=5.9e-05 Score=67.19 Aligned_cols=21 Identities=48% Similarity=0.506 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003773 40 ISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 40 v~I~G~~GiGKTtLa~~~~~~ 60 (796)
|.|+|++|+|||++|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999987
No 150
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=0.00051 Score=70.80 Aligned_cols=97 Identities=12% Similarity=0.113 Sum_probs=66.6
Q ss_pred CceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecchh-hhhc-cCccceEEccCCChHhHHHHHHHHhhCCCCC
Q 003773 115 GKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDRS-VALQ-MGSIDIISVKELGEEECWSLFKQVAFLGRSF 192 (796)
Q Consensus 115 ~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~ 192 (796)
+++-++|+|+++..+......+...+..-..++.+|++|.+.+ +... ......+.+.+++.+++.+.+.+... ..
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~-~~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALP-ES-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcc-cC--
Confidence 4455567899988777778888888777666777888877643 2212 12256899999999999998876531 00
Q ss_pred CCCcchhHHHHHHHHhcCCCchhHHHH
Q 003773 193 EDCEKLEPIGRKIACKCKGLPLAAKVI 219 (796)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~g~PLal~~~ 219 (796)
..+.+..+++.++|.|.....+
T Consensus 182 -----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -----ChHHHHHHHHHcCCCHHHHHHH
Confidence 1233567889999999755444
No 151
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.80 E-value=0.00031 Score=76.92 Aligned_cols=160 Identities=13% Similarity=0.099 Sum_probs=92.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCce
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKK 117 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 117 (796)
..+.|+|..|+|||.|++++++.......-..++|++. .++..++...+... . ...+++.+..-
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~-----~----~~~f~~~y~~~- 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----K----GDSFRRRYREM- 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----c----HHHHHHHhhcC-
Confidence 45899999999999999999987322111223566643 34444444433221 1 12233333332
Q ss_pred EEEEEeCCCCCCc-cCh-hhHhhhccCC-CCCcEEEEEecch---------hhhhccCccceEEccCCChHhHHHHHHHH
Q 003773 118 FFLVLDDVWDGDF-KKW-DPFFSCLKNG-HHESKILITTRDR---------SVALQMGSIDIISVKELGEEECWSLFKQV 185 (796)
Q Consensus 118 ~LlvlDd~~~~~~-~~~-~~l~~~~~~~-~~gs~iiiTsr~~---------~~~~~~~~~~~~~l~~l~~~e~~~lf~~~ 185 (796)
=+|+|||+..... +.| +.++..+... ..|..|||||+.. .+...+...-.++++..+.+.-.++++++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 4788899965322 222 2344433321 2345688988852 22223344568999999999999999988
Q ss_pred hhCCCCCCCCcchhHHHHHHHHhcCCCchhHH
Q 003773 186 AFLGRSFEDCEKLEPIGRKIACKCKGLPLAAK 217 (796)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 217 (796)
+....- .--.++++-|++.+.+..-.|.
T Consensus 459 a~~r~l----~l~~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 459 AVQEQL----NAPPEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHhcCC----CCCHHHHHHHHHhccCCHHHHH
Confidence 743222 1124566667777666544333
No 152
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.79 E-value=6.6e-06 Score=80.85 Aligned_cols=70 Identities=24% Similarity=0.357 Sum_probs=45.7
Q ss_pred HHHhhhcCcccceeeecccccCCCcccccccccc-------cccCccccceEecCCCCcc-----ccchhhhccCCccEe
Q 003773 418 LVELFSKVACLRALVIRQWFVPLDDQNFIREIPE-------NIGKLIHLKYLNLSELCIE-----RLPETLCELYNLQKL 485 (796)
Q Consensus 418 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~-------~~~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L 485 (796)
....+.+.++||.-++++++. +-....+|+ .+-.+++|++|+||.|-+. .+-.-+..+..|+.|
T Consensus 50 i~~~L~~~~~L~~v~~sd~ft----GR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL 125 (382)
T KOG1909|consen 50 IAKVLASKKELREVNLSDMFT----GRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEEL 125 (382)
T ss_pred HHHHHhhcccceeeehHhhhc----CCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHH
Confidence 344466677888888875422 122223343 3456778999999988765 233346778889999
Q ss_pred eccccc
Q 003773 486 AVRWCT 491 (796)
Q Consensus 486 ~l~~~~ 491 (796)
.|.+|.
T Consensus 126 ~L~N~G 131 (382)
T KOG1909|consen 126 YLNNCG 131 (382)
T ss_pred hhhcCC
Confidence 998876
No 153
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.77 E-value=0.00029 Score=71.42 Aligned_cols=133 Identities=11% Similarity=0.040 Sum_probs=69.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceE
Q 003773 39 IISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKF 118 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 118 (796)
-+.++|++|+|||++|+.++...........--++.++. .+ +...+.+.. .......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~-----~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT-----APKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc-----hHHHHHHHHHc---cCc
Confidence 578999999999999987766522111111112333321 11 222221111 11112222222 235
Q ss_pred EEEEeCCCCC---------CccChhhHhhhccCCCCCcEEEEEecchhhhhcc--------CccceEEccCCChHhHHHH
Q 003773 119 FLVLDDVWDG---------DFKKWDPFFSCLKNGHHESKILITTRDRSVALQM--------GSIDIISVKELGEEECWSL 181 (796)
Q Consensus 119 LlvlDd~~~~---------~~~~~~~l~~~~~~~~~gs~iiiTsr~~~~~~~~--------~~~~~~~l~~l~~~e~~~l 181 (796)
+|++|+++.. ..+..+.+...+.....+.+||+++......... .....+++++++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899999532 1112234445554444556666666543221111 1135799999999999999
Q ss_pred HHHHhh
Q 003773 182 FKQVAF 187 (796)
Q Consensus 182 f~~~~~ 187 (796)
+...+-
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 888763
No 154
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.77 E-value=0.00063 Score=73.30 Aligned_cols=154 Identities=19% Similarity=0.116 Sum_probs=86.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCc
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGK 116 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 116 (796)
...+.|+|+.|+|||+|++++++.... ....+++++. ..+...+...+... . ...+++..+ .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~--~~~~v~yi~~------~~f~~~~~~~l~~~-----~----~~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRE--SGGKILYVRS------ELFTEHLVSAIRSG-----E----MQRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEeeH------HHHHHHHHHHHhcc-----h----HHHHHHHcc-c
Confidence 356889999999999999999987322 2233556542 33444444444321 1 122333333 3
Q ss_pred eEEEEEeCCCCCCccC--hhhHhhhccC-CCCCcEEEEEecch-h--------hhhccCccceEEccCCChHhHHHHHHH
Q 003773 117 KFFLVLDDVWDGDFKK--WDPFFSCLKN-GHHESKILITTRDR-S--------VALQMGSIDIISVKELGEEECWSLFKQ 184 (796)
Q Consensus 117 ~~LlvlDd~~~~~~~~--~~~l~~~~~~-~~~gs~iiiTsr~~-~--------~~~~~~~~~~~~l~~l~~~e~~~lf~~ 184 (796)
.-++++||+....... .+.+...+.. ...|..||+||... . +...+.....+++.+++.++...++++
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 3478889985532111 1233333321 11345688888642 1 122223345888999999999999988
Q ss_pred HhhCCCCCCCCcchhHHHHHHHHhcCCC
Q 003773 185 VAFLGRSFEDCEKLEPIGRKIACKCKGL 212 (796)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 212 (796)
++...+.. --+++..-|++.+.|.
T Consensus 283 k~~~~~~~----l~~evl~~la~~~~~d 306 (445)
T PRK12422 283 KAEALSIR----IEETALDFLIEALSSN 306 (445)
T ss_pred HHHHcCCC----CCHHHHHHHHHhcCCC
Confidence 87432211 1244455566666654
No 155
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.76 E-value=2.7e-05 Score=53.13 Aligned_cols=41 Identities=29% Similarity=0.411 Sum_probs=35.2
Q ss_pred cccceeeecccccCCCcccccccccccccCccccceEecCCCCccccch
Q 003773 426 ACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPE 474 (796)
Q Consensus 426 ~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~ 474 (796)
++|++|+++ ++.+..+|..+++|++|++|++++|.|+.+|.
T Consensus 1 ~~L~~L~l~--------~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLS--------NNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEET--------SSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEcc--------CCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 479999999 88889999889999999999999999987764
No 156
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.75 E-value=4.8e-05 Score=81.44 Aligned_cols=198 Identities=13% Similarity=0.130 Sum_probs=115.7
Q ss_pred hhccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc--cCCeEEEEEeCCcCCHHHH
Q 003773 7 EWTTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKR--KFDIVIWVCVSDAFEEIRI 84 (796)
Q Consensus 7 ~~~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~f~~~~wv~~~~~~~~~~~ 84 (796)
+..-|..-+++||.+.-...|..++..+.-...-...|+.|+||||+|+.++.-.-... ..+ .|.+...=.++
T Consensus 8 rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~e-----PC~~C~~Ck~I 82 (515)
T COG2812 8 RKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAE-----PCGKCISCKEI 82 (515)
T ss_pred HHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCC-----cchhhhhhHhh
Confidence 33448888899999999997776665455556778999999999999988876521111 111 11111110111
Q ss_pred HHH----HHHHhccCCCCCccHHHHHHHHHHHh-CCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecchh-h
Q 003773 85 AKA----ILEVLDKSASSLGEFQSLMQQTQESI-RGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDRS-V 158 (796)
Q Consensus 85 ~~~----i~~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~-~ 158 (796)
... +.+.=..+.....++.++.+.+.-.- .++-=+.|+|.|+-.+...|..+...+..-....+.|+.|++.+ +
T Consensus 83 ~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Ki 162 (515)
T COG2812 83 NEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKI 162 (515)
T ss_pred hcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcC
Confidence 110 11100011122223333222222111 35555889999976667778888877766555666666666532 2
Q ss_pred -hhccCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCc
Q 003773 159 -ALQMGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLP 213 (796)
Q Consensus 159 -~~~~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 213 (796)
..-....+.|.++.++.++-...+...+..+.-.. .++...-|++..+|..
T Consensus 163 p~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~----e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 163 PNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINI----EEDALSLIARAAEGSL 214 (515)
T ss_pred chhhhhccccccccCCCHHHHHHHHHHHHHhcCCcc----CHHHHHHHHHHcCCCh
Confidence 22234467999999999999998888774333222 2444566777777743
No 157
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.74 E-value=0.00018 Score=79.96 Aligned_cols=52 Identities=13% Similarity=0.119 Sum_probs=39.4
Q ss_pred ccccccCcccccHHHHHHHhcccC----CCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 9 TTARLKLQIEGLDDDNTLALASSE----QQKGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 9 ~~~~~~~~~vGr~~~~~~l~~~~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..|...++++|.++.++.+..++. .....++++|+|++|+||||+++.++..
T Consensus 78 yrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 78 YKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356677789999998885544332 1233467999999999999999999876
No 158
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.73 E-value=0.00054 Score=65.94 Aligned_cols=181 Identities=19% Similarity=0.205 Sum_probs=95.6
Q ss_pred cccccCcccccHHHHHH---Hhccc-CCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHH
Q 003773 10 TARLKLQIEGLDDDNTL---ALASS-EQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIA 85 (796)
Q Consensus 10 ~~~~~~~~vGr~~~~~~---l~~~~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 85 (796)
-|..-.+|||.++-.+. .+.+. ..+...-=|.++|++|.||||||.-+++...+ .+. ++.+... +-.
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv--n~k----~tsGp~l---eK~ 91 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGV--NLK----ITSGPAL---EKP 91 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC--CeE----ecccccc---cCh
Confidence 35556689999998883 22332 22344557889999999999999999987332 221 1111110 001
Q ss_pred HHHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccC--------CCCCcE---------
Q 003773 86 KAILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKN--------GHHESK--------- 148 (796)
Q Consensus 86 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~--------~~~gs~--------- 148 (796)
.+++..+.. +. +.=++++|.+.......-+.+.+...+ .++++|
T Consensus 92 gDlaaiLt~------------------Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 92 GDLAAILTN------------------LE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred hhHHHHHhc------------------CC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 112222211 11 222344555543222111112222111 123333
Q ss_pred --EEEEecchhhhhccC--ccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHHHH
Q 003773 149 --ILITTRDRSVALQMG--SIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNL 222 (796)
Q Consensus 149 --iiiTsr~~~~~~~~~--~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~ 222 (796)
|=-|||.--+...+. ..-+.+++-.+.+|-.+...+.+..-.. +-.++.+.+|+++..|-|--..-+-+.
T Consensus 153 TLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i----~i~~~~a~eIA~rSRGTPRIAnRLLrR 226 (332)
T COG2255 153 TLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI----EIDEEAALEIARRSRGTPRIANRLLRR 226 (332)
T ss_pred eEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC----CCChHHHHHHHHhccCCcHHHHHHHHH
Confidence 224777533222221 1236778888889988888887732221 222556899999999999654444333
No 159
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.00052 Score=71.30 Aligned_cols=149 Identities=10% Similarity=0.067 Sum_probs=90.1
Q ss_pred Ccccc-cHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc--------------------cCCeEEEE
Q 003773 15 LQIEG-LDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKR--------------------KFDIVIWV 73 (796)
Q Consensus 15 ~~~vG-r~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--------------------~f~~~~wv 73 (796)
..++| .+.-++.+......+.-.....++|+.|+|||++|+.+++..--.. +.|.. ++
T Consensus 5 ~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~-~i 83 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVH-LV 83 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEE-Ee
Confidence 34677 5555565655554444567889999999999999988876521111 11211 11
Q ss_pred EeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHH----hCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEE
Q 003773 74 CVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQES----IRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKI 149 (796)
Q Consensus 74 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~----l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~i 149 (796)
... .....++++.+.+... ..+.+-++|+|+++..+......+...+..-...+.+
T Consensus 84 ~~~--------------------~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~ 143 (329)
T PRK08058 84 APD--------------------GQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTA 143 (329)
T ss_pred ccc--------------------cccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceE
Confidence 100 0011122222222111 2355678999999776666677788888776677778
Q ss_pred EEEecchh-hhhcc-CccceEEccCCChHhHHHHHHH
Q 003773 150 LITTRDRS-VALQM-GSIDIISVKELGEEECWSLFKQ 184 (796)
Q Consensus 150 iiTsr~~~-~~~~~-~~~~~~~l~~l~~~e~~~lf~~ 184 (796)
|++|.+.. +...+ .....+++.+++.++..+.+.+
T Consensus 144 Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 144 ILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred EEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 87776533 22222 2356899999999999888865
No 160
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.71 E-value=0.00036 Score=82.18 Aligned_cols=157 Identities=13% Similarity=0.078 Sum_probs=83.6
Q ss_pred cCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccc----CCe-EEEEEeCCcCCHHHHHHHH
Q 003773 14 KLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRK----FDI-VIWVCVSDAFEEIRIAKAI 88 (796)
Q Consensus 14 ~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~-~~wv~~~~~~~~~~~~~~i 88 (796)
-+.+|||+.++.++++.+... ...-+.++|++|+|||++|..++.+...... ... ++.++++ .+..
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~-~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~------~l~a-- 242 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRR-TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG------ALIA-- 242 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcC-CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH------HHhh--
Confidence 356999999999888755432 2244558999999999999998887321110 122 2223221 1110
Q ss_pred HHHhccCCCCCccHHHHHHHHHHHh--CCceEEEEEeCCCCCC-----c--cChhhHhhhccCCCCCcEEEEEecchhhh
Q 003773 89 LEVLDKSASSLGEFQSLMQQTQESI--RGKKFFLVLDDVWDGD-----F--KKWDPFFSCLKNGHHESKILITTRDRSVA 159 (796)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~~~~~~~l--~~~~~LlvlDd~~~~~-----~--~~~~~l~~~~~~~~~gs~iiiTsr~~~~~ 159 (796)
+ .....+.++.+..+.+.+ .+++.+|++|+++.-. . .+...+...... ...-++|-+|...+.-
T Consensus 243 -----~-~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~-~g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 243 -----G-AKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA-RGELHCIGATTLDEYR 315 (852)
T ss_pred -----c-chhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh-cCceEEEEeCcHHHHH
Confidence 0 001122333333333333 2468999999995321 0 011122221111 1223455555544331
Q ss_pred hc-------cCccceEEccCCChHhHHHHHHHHh
Q 003773 160 LQ-------MGSIDIISVKELGEEECWSLFKQVA 186 (796)
Q Consensus 160 ~~-------~~~~~~~~l~~l~~~e~~~lf~~~~ 186 (796)
.. ....+.+.+...+.++..++++...
T Consensus 316 ~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 316 KYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 10 1224578899999999999887653
No 161
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.70 E-value=0.00067 Score=72.18 Aligned_cols=134 Identities=19% Similarity=0.226 Sum_probs=82.0
Q ss_pred HHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCcc
Q 003773 22 DDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGE 101 (796)
Q Consensus 22 ~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 101 (796)
.-+..+......... ++.|.|+-++||||+++.+.... ... .+++...+......-..+..+.
T Consensus 24 ~~~~~l~~~~~~~~~--i~~i~GpR~~GKTtll~~l~~~~--~~~---~iy~~~~d~~~~~~~l~d~~~~---------- 86 (398)
T COG1373 24 KLLPRLIKKLDLRPF--IILILGPRQVGKTTLLKLLIKGL--LEE---IIYINFDDLRLDRIELLDLLRA---------- 86 (398)
T ss_pred hhhHHHHhhcccCCc--EEEEECCccccHHHHHHHHHhhC--Ccc---eEEEEecchhcchhhHHHHHHH----------
Confidence 333455555432222 99999999999999997766652 122 5555444321111111111111
Q ss_pred HHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecchhhh-----hcc-CccceEEccCCCh
Q 003773 102 FQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDRSVA-----LQM-GSIDIISVKELGE 175 (796)
Q Consensus 102 ~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~~~-----~~~-~~~~~~~l~~l~~ 175 (796)
....-..++.+|+||.| .....|......+.+.++. +|++|+-+.... ... +....+++-|||-
T Consensus 87 -------~~~~~~~~~~yifLDEI--q~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF 156 (398)
T COG1373 87 -------YIELKEREKSYIFLDEI--QNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSF 156 (398)
T ss_pred -------HHHhhccCCceEEEecc--cCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCH
Confidence 11111227899999999 4567899988888877666 788888764332 222 2356899999999
Q ss_pred HhHHHHH
Q 003773 176 EECWSLF 182 (796)
Q Consensus 176 ~e~~~lf 182 (796)
.|...+-
T Consensus 157 ~Efl~~~ 163 (398)
T COG1373 157 REFLKLK 163 (398)
T ss_pred HHHHhhc
Confidence 9887653
No 162
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.69 E-value=0.00023 Score=64.35 Aligned_cols=87 Identities=22% Similarity=0.162 Sum_probs=47.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCc-
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGK- 116 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~- 116 (796)
+.+.|+|++|+||||+|+.++... ......+++++.+........... ...................+.+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL--GPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc--CCCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 578999999999999999998873 222234666655543322222111 111111111122222223333333333
Q ss_pred eEEEEEeCCCCC
Q 003773 117 KFFLVLDDVWDG 128 (796)
Q Consensus 117 ~~LlvlDd~~~~ 128 (796)
..++++|+++..
T Consensus 79 ~~viiiDei~~~ 90 (148)
T smart00382 79 PDVLILDEITSL 90 (148)
T ss_pred CCEEEEECCccc
Confidence 499999999664
No 163
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.68 E-value=0.0016 Score=70.60 Aligned_cols=207 Identities=12% Similarity=0.067 Sum_probs=127.0
Q ss_pred cccCcccccHHHHHHHhc---c-cCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcc------ccccCCeEEEEEeCCcCCH
Q 003773 12 RLKLQIEGLDDDNTLALA---S-SEQQKGLRIISLFGLGGIGKTTLAQLAFNNEG------VKRKFDIVIWVCVSDAFEE 81 (796)
Q Consensus 12 ~~~~~~vGr~~~~~~l~~---~-~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~------~~~~f~~~~wv~~~~~~~~ 81 (796)
..+..+=+||.|...+-. . ...+..-..+.|.|.+|+|||+.+..|.+... .-..|+ .+.|+...-..+
T Consensus 393 ~vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~ 471 (767)
T KOG1514|consen 393 AVPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASP 471 (767)
T ss_pred hccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCH
Confidence 356668899999883322 1 22223445999999999999999999988522 123454 456666677789
Q ss_pred HHHHHHHHHHhccCCCCCccHHHHHHHHHHHhC-----CceEEEEEeCCCCCCccChhhHhhhccC-CCCCcEEEEEecc
Q 003773 82 IRIAKAILEVLDKSASSLGEFQSLMQQTQESIR-----GKKFFLVLDDVWDGDFKKWDPFFSCLKN-GHHESKILITTRD 155 (796)
Q Consensus 82 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~-----~~~~LlvlDd~~~~~~~~~~~l~~~~~~-~~~gs~iiiTsr~ 155 (796)
.++...|...+.+.... .......+..++. .+..++++|+++..-...-+.+...|.| ..++||++|.+=.
T Consensus 472 ~~~Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 472 REIYEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIA 548 (767)
T ss_pred HHHHHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEec
Confidence 99999999999775433 2333344444443 4578888898844222223444555555 4577886654421
Q ss_pred --hhhhhc-c-------CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHHHHH
Q 003773 156 --RSVALQ-M-------GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLL 223 (796)
Q Consensus 156 --~~~~~~-~-------~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 223 (796)
.+.... + -....+..++.+.++-.+....+..+. ........+-++++|+...|-.-.|+...-++.
T Consensus 549 NTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 549 NTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred ccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 111111 0 113477888888888888887766433 222334445556667666666666666655544
No 164
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.68 E-value=0.00037 Score=72.45 Aligned_cols=134 Identities=16% Similarity=0.205 Sum_probs=83.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCC--eEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHh
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFD--IVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESI 113 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 113 (796)
....+.|||..|.|||.|++++.+. ...... .+++++ .+.+...+...+.. ..++..++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~~------se~f~~~~v~a~~~---------~~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYLT------SEDFTNDFVKALRD---------NEMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEecc------HHHHHHHHHHHHHh---------hhHHHHHHhh
Confidence 4678999999999999999999998 333333 354442 33444444444322 1234455554
Q ss_pred CCceEEEEEeCCCCCC-ccC-hhhHhhhccCC-CCCcEEEEEecc---------hhhhhccCccceEEccCCChHhHHHH
Q 003773 114 RGKKFFLVLDDVWDGD-FKK-WDPFFSCLKNG-HHESKILITTRD---------RSVALQMGSIDIISVKELGEEECWSL 181 (796)
Q Consensus 114 ~~~~~LlvlDd~~~~~-~~~-~~~l~~~~~~~-~~gs~iiiTsr~---------~~~~~~~~~~~~~~l~~l~~~e~~~l 181 (796)
.-=++++||++.-. .+. -+.++..+..- ..|-.||+|++. .++...+...-.+++.+.+.+.....
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 33478899996521 111 23344444332 233379999974 22333344556999999999999999
Q ss_pred HHHHhhC
Q 003773 182 FKQVAFL 188 (796)
Q Consensus 182 f~~~~~~ 188 (796)
+.+++..
T Consensus 253 L~kka~~ 259 (408)
T COG0593 253 LRKKAED 259 (408)
T ss_pred HHHHHHh
Confidence 9887643
No 165
>PRK08116 hypothetical protein; Validated
Probab=97.65 E-value=0.00019 Score=71.97 Aligned_cols=103 Identities=22% Similarity=0.209 Sum_probs=59.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCce
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKK 117 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 117 (796)
..+.++|..|+|||.||.++++... ..-..+++++ ...++..+........ ..+. ..+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~--~~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~----~~~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI--EKGVPVIFVN------FPQLLNRIKSTYKSSG--KEDE----NEIIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEE------HHHHHHHHHHHHhccc--cccH----HHHHHHhcCCC
Confidence 4688999999999999999999843 2233466664 3345555554443211 1111 22333344444
Q ss_pred EEEEEeCCCCCCccChhh--HhhhccC-CCCCcEEEEEecc
Q 003773 118 FFLVLDDVWDGDFKKWDP--FFSCLKN-GHHESKILITTRD 155 (796)
Q Consensus 118 ~LlvlDd~~~~~~~~~~~--l~~~~~~-~~~gs~iiiTsr~ 155 (796)
||||||+......+|.. +...+.. ...+..+|+||..
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999996543444532 3333332 2345569999874
No 166
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.64 E-value=1e-05 Score=87.64 Aligned_cols=100 Identities=27% Similarity=0.337 Sum_probs=56.9
Q ss_pred hhcCcccceeeecccccCCCcccccccccccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhc
Q 003773 422 FSKVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIG 501 (796)
Q Consensus 422 ~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~ 501 (796)
+..+.+|..|++. .+.+..+...+..+++|++|++++|.|+.+. .+..+..|+.|++.+|. +..++ ++.
T Consensus 91 l~~~~~l~~l~l~--------~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~-~~~ 159 (414)
T KOG0531|consen 91 LSKLKSLEALDLY--------DNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDIS-GLE 159 (414)
T ss_pred cccccceeeeecc--------ccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc-chhcc-CCc
Confidence 4556666666666 5556555444566666777777776666664 35566666666666655 44443 245
Q ss_pred cccCCCeeecCCccccccCccc-CCCCCCcccC
Q 003773 502 KLMNMRSLMNGQTEKLKYLPIG-ISRLTSLRTL 533 (796)
Q Consensus 502 ~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L 533 (796)
.+++|+.+++++|. +..+... +..+.+|+.+
T Consensus 160 ~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l 191 (414)
T KOG0531|consen 160 SLKSLKLLDLSYNR-IVDIENDELSELISLEEL 191 (414)
T ss_pred cchhhhcccCCcch-hhhhhhhhhhhccchHHH
Confidence 56666666666663 3333221 2344444444
No 167
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.63 E-value=0.0002 Score=74.23 Aligned_cols=32 Identities=31% Similarity=0.662 Sum_probs=16.9
Q ss_pred CccceeeccCCCCCCCCCcCCCCCCCccEEEEcCC
Q 003773 739 PRLSSLEIDCCSKLNVLPDHLLQTTTLQELSIRGC 773 (796)
Q Consensus 739 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~ 773 (796)
++|++|.+++|..+ .+|..+. .+|+.|+++.|
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 45666666666433 2443332 45666666554
No 168
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.62 E-value=0.00092 Score=68.22 Aligned_cols=95 Identities=9% Similarity=0.076 Sum_probs=66.3
Q ss_pred CceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecch-hhhhcc-CccceEEccCCChHhHHHHHHHHhhCCCCC
Q 003773 115 GKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDR-SVALQM-GSIDIISVKELGEEECWSLFKQVAFLGRSF 192 (796)
Q Consensus 115 ~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~-~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~ 192 (796)
+++-++|+|+++......-..+...+..-..++.+|++|.+. .+...+ .....+.+.+++.+++.+.+.+.. .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~---~-- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG---V-- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC---C--
Confidence 566799999998776667777888777766777777777653 332222 225688899999999998886531 1
Q ss_pred CCCcchhHHHHHHHHhcCCCchhHHHH
Q 003773 193 EDCEKLEPIGRKIACKCKGLPLAAKVI 219 (796)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~g~PLal~~~ 219 (796)
. ...+..++..++|.|+....+
T Consensus 187 -~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 187 -S----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred -C----hHHHHHHHHHcCCCHHHHHHH
Confidence 1 222567899999999865444
No 169
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.62 E-value=0.00063 Score=79.76 Aligned_cols=158 Identities=13% Similarity=0.070 Sum_probs=82.9
Q ss_pred ccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccccc----CC-eEEEEEeCCcCCHHHHHHH
Q 003773 13 LKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRK----FD-IVIWVCVSDAFEEIRIAKA 87 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~----f~-~~~wv~~~~~~~~~~~~~~ 87 (796)
.-+.++||+.++..+++-+... ...-+.++|++|+|||++|+.++........ .. .+++++++.- ..
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r~-~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l------~a- 247 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQRR-TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL------VA- 247 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhcC-CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh------hh-
Confidence 3456999999999887655432 2235569999999999999999887321110 12 2333333221 00
Q ss_pred HHHHhccCCCCCccHHHHHHHHHHHh--CCceEEEEEeCCCCCC-------ccChhhHhhhccCCCCCcEEEEEecchhh
Q 003773 88 ILEVLDKSASSLGEFQSLMQQTQESI--RGKKFFLVLDDVWDGD-------FKKWDPFFSCLKNGHHESKILITTRDRSV 158 (796)
Q Consensus 88 i~~~l~~~~~~~~~~~~~~~~~~~~l--~~~~~LlvlDd~~~~~-------~~~~~~l~~~~~~~~~gs~iiiTsr~~~~ 158 (796)
+ .....+.++.++.+.+.+ .+++.++++|+++.-. ..+...+..+... ...-++|-+|...+.
T Consensus 248 ------g-~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~-~g~l~~IgaTt~~e~ 319 (857)
T PRK10865 248 ------G-AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDEY 319 (857)
T ss_pred ------c-cchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh-cCCCeEEEcCCCHHH
Confidence 0 011122222223222222 2578999999995421 0011222221111 123455655554432
Q ss_pred hhc-------cCccceEEccCCChHhHHHHHHHHh
Q 003773 159 ALQ-------MGSIDIISVKELGEEECWSLFKQVA 186 (796)
Q Consensus 159 ~~~-------~~~~~~~~l~~l~~~e~~~lf~~~~ 186 (796)
... ....+.+.+...+.++..++++...
T Consensus 320 r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 320 RQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 110 1123467777778899999886543
No 170
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.61 E-value=0.00046 Score=74.66 Aligned_cols=162 Identities=15% Similarity=0.141 Sum_probs=84.7
Q ss_pred CcccccHHHHHHHhcccC------------CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc---cCCeEEEEEeCCcC
Q 003773 15 LQIEGLDDDNTLALASSE------------QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKR---KFDIVIWVCVSDAF 79 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~~~------------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~f~~~~wv~~~~~~ 79 (796)
.++.|.+..++.+.+... +-...+-+.++|++|+|||++|+++++...... ......|+.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 457889998884433210 112345688999999999999999998732210 1122344443321
Q ss_pred CHHHHHHHHHHHhccCCCCCccHHHHHHHHHHH-hCCceEEEEEeCCCCCC-------ccCh-----hhHhhhccCCC--
Q 003773 80 EEIRIAKAILEVLDKSASSLGEFQSLMQQTQES-IRGKKFFLVLDDVWDGD-------FKKW-----DPFFSCLKNGH-- 144 (796)
Q Consensus 80 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~-------~~~~-----~~l~~~~~~~~-- 144 (796)
.+. ....+. .......+.+..++. ..+++++|++|+++..- ..+. ..+...+....
T Consensus 261 ---eLl----~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 261 ---ELL----NKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred ---hhc----ccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 110 000000 000111122222221 23578999999996410 0111 12222222211
Q ss_pred CCcEEEEEecchhhhh-----ccCccceEEccCCChHhHHHHHHHHh
Q 003773 145 HESKILITTRDRSVAL-----QMGSIDIISVKELGEEECWSLFKQVA 186 (796)
Q Consensus 145 ~gs~iiiTsr~~~~~~-----~~~~~~~~~l~~l~~~e~~~lf~~~~ 186 (796)
.+..||.||...+... .......+++...+.++..++|+.+.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 2344555665443222 11234579999999999999998876
No 171
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.54 E-value=0.0011 Score=77.68 Aligned_cols=120 Identities=14% Similarity=0.207 Sum_probs=64.2
Q ss_pred CcccccHHHHHHHhccc-------CC-CCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHH
Q 003773 15 LQIEGLDDDNTLALASS-------EQ-QKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAK 86 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~~-------~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 86 (796)
..++|.+..++.+.... .. +....++.++|+.|+|||++|+.+++.. ...-...+.++++.-.. ..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l--~~~~~~~i~id~se~~~-~~--- 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM--FDSDDAMVRIDMSEFME-KH--- 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh--hcCCCcEEEEEhHHhhh-hh---
Confidence 35889999888443332 11 1223578899999999999999998752 11222344555543211 11
Q ss_pred HHHHHhccCCCCCccHHHHHHHHHHHhC-CceEEEEEeCCCCCCccChhhHhhhccC
Q 003773 87 AILEVLDKSASSLGEFQSLMQQTQESIR-GKKFFLVLDDVWDGDFKKWDPFFSCLKN 142 (796)
Q Consensus 87 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~-~~~~LlvlDd~~~~~~~~~~~l~~~~~~ 142 (796)
.+.+.++. .+.....++. ..+.+..+ ...-+|+||++...+.+.+..+...+..
T Consensus 642 ~~~~LiG~-~pgy~g~~~~-g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~ 696 (857)
T PRK10865 642 SVSRLVGA-PPGYVGYEEG-GYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDD 696 (857)
T ss_pred hHHHHhCC-CCcccccchh-HHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhh
Confidence 11122222 2211111110 11222222 2336999999987777777777766643
No 172
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.54 E-value=0.00067 Score=62.36 Aligned_cols=137 Identities=18% Similarity=0.182 Sum_probs=77.3
Q ss_pred ccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc-------------------cCCeEEEEEeCCc-
Q 003773 19 GLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKR-------------------KFDIVIWVCVSDA- 78 (796)
Q Consensus 19 Gr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~~~~- 78 (796)
|.++..+.|......+.-...+.++|+.|+||+++|.++++..--.. +.| +.|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD-FIIIKPDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT-EEEEETTTSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc-eEEEeccccc
Confidence 55666666655554444456889999999999999998887532111 222 333322221
Q ss_pred --CCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecch
Q 003773 79 --FEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDR 156 (796)
Q Consensus 79 --~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~ 156 (796)
...+++. .+.+.+.... ..++.-++|+|+++....+....+...+......+++|++|++.
T Consensus 80 ~~i~i~~ir-~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 80 KSIKIDQIR-EIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSBSHHHHH-HHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred chhhHHHHH-HHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 1222222 2222221110 13567789999998888888889999888888889999988875
Q ss_pred h-hhhcc-CccceEEccCC
Q 003773 157 S-VALQM-GSIDIISVKEL 173 (796)
Q Consensus 157 ~-~~~~~-~~~~~~~l~~l 173 (796)
. +...+ .....+.+.++
T Consensus 143 ~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 143 SKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp GGS-HHHHTTSEEEEE---
T ss_pred HHChHHHHhhceEEecCCC
Confidence 4 22111 22345555554
No 173
>CHL00176 ftsH cell division protein; Validated
Probab=97.53 E-value=0.0014 Score=73.59 Aligned_cols=174 Identities=14% Similarity=0.102 Sum_probs=92.7
Q ss_pred cCcccccHHHHHHH---hcccC--------CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHH
Q 003773 14 KLQIEGLDDDNTLA---LASSE--------QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEI 82 (796)
Q Consensus 14 ~~~~vGr~~~~~~l---~~~~~--------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 82 (796)
-.++.|.++..+++ ++.+. +....+-|.++|++|+|||++|++++... ...| +.++. .
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~~p~-----i~is~----s 250 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--EVPF-----FSISG----S 250 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CCCe-----eeccH----H
Confidence 35688988877732 22211 11224568999999999999999998762 2222 22221 1
Q ss_pred HHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCC----------ccChhh-Hhhhc---cC--CCCC
Q 003773 83 RIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGD----------FKKWDP-FFSCL---KN--GHHE 146 (796)
Q Consensus 83 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~----------~~~~~~-l~~~~---~~--~~~g 146 (796)
++... ..+ .........+.+.....+++|++|+++.-. .+..+. +...+ .. ...+
T Consensus 251 ~f~~~---~~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 251 EFVEM---FVG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HHHHH---hhh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 11110 000 011222233444456778999999995421 111112 22222 11 2234
Q ss_pred cEEEEEecchhhhh-----ccCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCC
Q 003773 147 SKILITTRDRSVAL-----QMGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGL 212 (796)
Q Consensus 147 s~iiiTsr~~~~~~-----~~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 212 (796)
..||.||...+... .......+.+...+.++-.++++.++..... ........+++.+.|.
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-----~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-----SPDVSLELIARRTPGF 387 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-----chhHHHHHHHhcCCCC
Confidence 55666665543222 1123457888888999999999887743111 1122356677777773
No 174
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.51 E-value=0.00014 Score=83.16 Aligned_cols=157 Identities=14% Similarity=0.128 Sum_probs=85.4
Q ss_pred CcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccc-cc---CCeEEEEEeCCcCCHHHHHHHHHH
Q 003773 15 LQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVK-RK---FDIVIWVCVSDAFEEIRIAKAILE 90 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~---f~~~~wv~~~~~~~~~~~~~~i~~ 90 (796)
+.++||++++..+++.+..... .-+.++|++|+|||++|+.++...... .. .+..+|.. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~-~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l------ 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK-NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL------ 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC-CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH------
Confidence 4699999999977775543222 345689999999999999988752111 11 13344421 11111
Q ss_pred HhccCCCCCccHHHHHHHHHHHh-CCceEEEEEeCCCCC--------CccChhhHhhhccCCCCCcEEEEEecchhhhhc
Q 003773 91 VLDKSASSLGEFQSLMQQTQESI-RGKKFFLVLDDVWDG--------DFKKWDPFFSCLKNGHHESKILITTRDRSVALQ 161 (796)
Q Consensus 91 ~l~~~~~~~~~~~~~~~~~~~~l-~~~~~LlvlDd~~~~--------~~~~~~~l~~~~~~~~~gs~iiiTsr~~~~~~~ 161 (796)
+.+ .....+.++..+.+.+.+ +.++.+|++|+++.- ...+...+...+... ..-++|-+|...++...
T Consensus 254 -laG-~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E~~~~ 330 (758)
T PRK11034 254 -LAG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFSNI 330 (758)
T ss_pred -hcc-cchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHHHHHH
Confidence 101 111223333333333333 345789999999531 111222223222222 22345555544332111
Q ss_pred -------cCccceEEccCCChHhHHHHHHHHh
Q 003773 162 -------MGSIDIISVKELGEEECWSLFKQVA 186 (796)
Q Consensus 162 -------~~~~~~~~l~~l~~~e~~~lf~~~~ 186 (796)
....+.+++.+.+.+++.++++...
T Consensus 331 ~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 331 FEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1224689999999999999998654
No 175
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.49 E-value=0.0029 Score=64.51 Aligned_cols=154 Identities=10% Similarity=0.040 Sum_probs=95.8
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHcCcccc-------------------ccCCeEEEEEeCCcCCHHHHHHHHHHHhcc
Q 003773 34 QKGLRIISLFGLGGIGKTTLAQLAFNNEGVK-------------------RKFDIVIWVCVSDAFEEIRIAKAILEVLDK 94 (796)
Q Consensus 34 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-------------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 94 (796)
+.-...+.++|+.|+||+++|..++...--. .|.| +.|+.-..
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~----------------- 83 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEK----------------- 83 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCc-----------------
Confidence 3445689999999999999998887752111 1122 11221100
Q ss_pred CCCCCccHHHHHHHHHHHh-----CCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecch-hhhhcc-Cccce
Q 003773 95 SASSLGEFQSLMQQTQESI-----RGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDR-SVALQM-GSIDI 167 (796)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~l-----~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~-~~~~~~-~~~~~ 167 (796)
......++++. .+.+.+ .++.-++|+|+++.........+...+..-..++.+|++|.+. .+...+ .....
T Consensus 84 -~~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~ 161 (319)
T PRK06090 84 -EGKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQ 161 (319)
T ss_pred -CCCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccee
Confidence 00111223322 222222 3556689999998877777788888887777777777776654 333222 23568
Q ss_pred EEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHH
Q 003773 168 ISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVI 219 (796)
Q Consensus 168 ~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 219 (796)
+.+.+++.+++.+.+.+.. . . .+..+++.++|.|+....+
T Consensus 162 ~~~~~~~~~~~~~~L~~~~----~-~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 162 WVVTPPSTAQAMQWLKGQG----I-T-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred EeCCCCCHHHHHHHHHHcC----C-c-------hHHHHHHHcCCCHHHHHHH
Confidence 9999999999999886532 1 0 1346789999999866544
No 176
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.48 E-value=0.0037 Score=63.94 Aligned_cols=169 Identities=8% Similarity=0.003 Sum_probs=95.5
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHH---HhccCCCCCccHHHHHHHHH
Q 003773 34 QKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILE---VLDKSASSLGEFQSLMQQTQ 110 (796)
Q Consensus 34 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~---~l~~~~~~~~~~~~~~~~~~ 110 (796)
+.-.....++|+.|+||+++|++++...--....... .++...+=..+...-.- .+.........+++..+ +.
T Consensus 21 ~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~---~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~-l~ 96 (325)
T PRK06871 21 GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQ---PCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVRE-IN 96 (325)
T ss_pred CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHH-HH
Confidence 3345688899999999999999888753211111000 01110000000000000 00000011112333222 22
Q ss_pred HHh-----CCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecch-hhhhcc-CccceEEccCCChHhHHHHHH
Q 003773 111 ESI-----RGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDR-SVALQM-GSIDIISVKELGEEECWSLFK 183 (796)
Q Consensus 111 ~~l-----~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~-~~~~~~-~~~~~~~l~~l~~~e~~~lf~ 183 (796)
+.+ .+++-++|+|+++.........+...+..-...+.+|++|.+. .+...+ .....+.+.+++.++..+.+.
T Consensus 97 ~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~ 176 (325)
T PRK06871 97 EKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQ 176 (325)
T ss_pred HHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHH
Confidence 222 3666788899998877777788888887777777777777764 333222 225689999999999999887
Q ss_pred HHhhCCCCCCCCcchhHHHHHHHHhcCCCchh
Q 003773 184 QVAFLGRSFEDCEKLEPIGRKIACKCKGLPLA 215 (796)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 215 (796)
+... . . ...+...++.++|.|..
T Consensus 177 ~~~~---~--~----~~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 177 AQSS---A--E----ISEILTALRINYGRPLL 199 (325)
T ss_pred HHhc---c--C----hHHHHHHHHHcCCCHHH
Confidence 7541 1 1 11255678889999963
No 177
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.00027 Score=79.02 Aligned_cols=118 Identities=18% Similarity=0.333 Sum_probs=73.0
Q ss_pred CcccccHHHHHHHhcc-------cC-CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccC---CeEEEEEeCCcCCHHH
Q 003773 15 LQIEGLDDDNTLALAS-------SE-QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKF---DIVIWVCVSDAFEEIR 83 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~-------~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f---~~~~wv~~~~~~~~~~ 83 (796)
..++|.++.++.+.++ +. .+....+....|+.|+|||.||++++.. .| +..+-++.|.-..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMSEy~E--- 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMSEYME--- 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechHHHHH---
Confidence 4589999999944433 22 2334578888999999999999998864 34 3445555443211
Q ss_pred HHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceE-EEEEeCCCCCCccChhhHhhhccCC
Q 003773 84 IAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKF-FLVLDDVWDGDFKKWDPFFSCLKNG 143 (796)
Q Consensus 84 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-LlvlDd~~~~~~~~~~~l~~~~~~~ 143 (796)
.+.+.+-.| .++.-...++ .-.+-+..+.++| +|.||++...+++-++.+.+.+.++
T Consensus 563 -kHsVSrLIG-aPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 563 -KHSVSRLIG-APPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred -HHHHHHHhC-CCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 112223333 3333222222 2234445567777 7788999888888888888877765
No 178
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.46 E-value=0.00053 Score=73.09 Aligned_cols=153 Identities=16% Similarity=0.140 Sum_probs=82.1
Q ss_pred CcccccHHHHHHHhccc----C--------CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHH
Q 003773 15 LQIEGLDDDNTLALASS----E--------QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEI 82 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~~----~--------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 82 (796)
.++.|.+..++.+.+.. . +-...+-|.++|++|+|||++|+++++. ....| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch-----
Confidence 35789998888433221 0 1123456889999999999999999987 33333 2222111
Q ss_pred HHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCC------c----cC----hhhHhhhccC--CCCC
Q 003773 83 RIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGD------F----KK----WDPFFSCLKN--GHHE 146 (796)
Q Consensus 83 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~------~----~~----~~~l~~~~~~--~~~g 146 (796)
+... ..+. ........+.....+.+.+|+||+++... . .. ...+...+.. ...+
T Consensus 253 -L~~k---~~Ge------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 253 -LIQK---YLGD------GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred -hhhh---hcch------HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 1110 0000 00111111222224567899999874310 0 00 1111111211 1235
Q ss_pred cEEEEEecchhhhhc-----cCccceEEccCCChHhHHHHHHHHhh
Q 003773 147 SKILITTRDRSVALQ-----MGSIDIISVKELGEEECWSLFKQVAF 187 (796)
Q Consensus 147 s~iiiTsr~~~~~~~-----~~~~~~~~l~~l~~~e~~~lf~~~~~ 187 (796)
.+||+||...+.... ......+++...+.++..++|..+..
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 678888875433222 12345889999999999999987763
No 179
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.44 E-value=2e-06 Score=91.95 Aligned_cols=60 Identities=28% Similarity=0.218 Sum_probs=39.0
Q ss_pred hhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCCCCCccccc--cccceecccc
Q 003773 617 EALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCEHLPPLGKL--LLEKLTLYNL 678 (796)
Q Consensus 617 ~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~l~~l--~L~~L~l~~~ 678 (796)
++++.++.+++|+++.|...... .+..+++|++|||+.| .+..+|.++.- .|+.|.++++
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhhheeeeeccc
Confidence 45556667777888877776644 5667888888888877 35556665443 4555555543
No 180
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.43 E-value=0.0035 Score=59.43 Aligned_cols=175 Identities=15% Similarity=0.106 Sum_probs=98.1
Q ss_pred ccCcccccHHHHH--H-HhcccC-----CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHH
Q 003773 13 LKLQIEGLDDDNT--L-ALASSE-----QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRI 84 (796)
Q Consensus 13 ~~~~~vGr~~~~~--~-l~~~~~-----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 84 (796)
.-+++||.|+... . ++..+. ++-..+-|..+|++|.|||.+|+++++. .+-.| +.+..
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane--~kvp~-----l~vka------- 184 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE--AKVPL-----LLVKA------- 184 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc--cCCce-----EEech-------
Confidence 4567999999888 2 222222 2345688999999999999999999998 33333 11111
Q ss_pred HHHHHHHhccCCCCCccHHHHHHHHHHH-hCCceEEEEEeCCCCCC------------ccChhhHhhhccC--CCCCcEE
Q 003773 85 AKAILEVLDKSASSLGEFQSLMQQTQES-IRGKKFFLVLDDVWDGD------------FKKWDPFFSCLKN--GHHESKI 149 (796)
Q Consensus 85 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~------------~~~~~~l~~~~~~--~~~gs~i 149 (796)
.+-|-+..|. ..+.+.++.++ -+.-++++++|.++... .+...++..-+.. .+.|...
T Consensus 185 t~liGehVGd-------gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvt 257 (368)
T COG1223 185 TELIGEHVGD-------GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVT 257 (368)
T ss_pred HHHHHHHhhh-------HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEE
Confidence 1112222221 11222222222 24568999999884411 1112223332222 2455555
Q ss_pred EEEecchhhhhcc---CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCc
Q 003773 150 LITTRDRSVALQM---GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLP 213 (796)
Q Consensus 150 iiTsr~~~~~~~~---~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 213 (796)
|-.|...++.+.. ...+.++..--+++|-.+++...+..-+-+. ..-.+.++++.+|..
T Consensus 258 IaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv-----~~~~~~~~~~t~g~S 319 (368)
T COG1223 258 IAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV-----DADLRYLAAKTKGMS 319 (368)
T ss_pred EeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc-----ccCHHHHHHHhCCCC
Confidence 6566655544321 2245778888889999999988874322221 111556777777754
No 181
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.41 E-value=0.0021 Score=71.19 Aligned_cols=175 Identities=11% Similarity=0.076 Sum_probs=89.6
Q ss_pred cCcccccHHHHHHHhcc---cC--------CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHH
Q 003773 14 KLQIEGLDDDNTLALAS---SE--------QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEI 82 (796)
Q Consensus 14 ~~~~vGr~~~~~~l~~~---~~--------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 82 (796)
-++++|.++..+++.+. .. +....+-+.++|++|+|||++|++++.. ....| +.++. .
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~~~~-----~~i~~----~ 122 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVPF-----FSISG----S 122 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCe-----eeccH----H
Confidence 34588988877633221 11 1223456889999999999999999876 22222 22221 1
Q ss_pred HHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCC----------ccChhh----HhhhccC--CCCC
Q 003773 83 RIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGD----------FKKWDP----FFSCLKN--GHHE 146 (796)
Q Consensus 83 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~----------~~~~~~----l~~~~~~--~~~g 146 (796)
.+.... .+. ........+.......+.+|++|+++.-. .+.+.. +...+.. ...+
T Consensus 123 ~~~~~~---~g~------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 123 DFVEMF---VGV------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred HHHHHH---hcc------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 111110 010 11122222333334567899999995411 011111 1111211 1233
Q ss_pred cEEEEEecchh-----hhhccCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCc
Q 003773 147 SKILITTRDRS-----VALQMGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLP 213 (796)
Q Consensus 147 s~iiiTsr~~~-----~~~~~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 213 (796)
..||.||...+ +.+.......+.+...+.++-.++|+.+...... ... .....+++.+.|..
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~----~~l~~la~~t~G~s 260 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APD----VDLKAVARRTPGFS 260 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccc----hhHHHHHHhCCCCC
Confidence 44555665433 2211223468889988888888898877632211 111 12446777777744
No 182
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.39 E-value=0.0019 Score=68.38 Aligned_cols=173 Identities=14% Similarity=0.109 Sum_probs=90.1
Q ss_pred cccccHHHHHHHhccc----C--------CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHH
Q 003773 16 QIEGLDDDNTLALASS----E--------QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIR 83 (796)
Q Consensus 16 ~~vGr~~~~~~l~~~~----~--------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 83 (796)
++.|.+..++++.+.. . +-...+-|.++|++|+|||++|+++++. ....| +.+..+ .
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f---i~i~~s------~ 214 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF---IRVVGS------E 214 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEehH------H
Confidence 4788888887433221 0 1124567889999999999999999986 33332 222111 1
Q ss_pred HHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCC------c----cCh----hhHhhhccC--CCCCc
Q 003773 84 IAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGD------F----KKW----DPFFSCLKN--GHHES 147 (796)
Q Consensus 84 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~------~----~~~----~~l~~~~~~--~~~gs 147 (796)
+.. ...+. ......+.+.......+.+|++|+++... . ... ..+...+.. ...+.
T Consensus 215 l~~---k~~ge------~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v 285 (398)
T PTZ00454 215 FVQ---KYLGE------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNV 285 (398)
T ss_pred HHH---Hhcch------hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCE
Confidence 111 11110 01111112222234578999999985310 0 011 112222221 12355
Q ss_pred EEEEEecchhhhhc-----cCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCc
Q 003773 148 KILITTRDRSVALQ-----MGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLP 213 (796)
Q Consensus 148 ~iiiTsr~~~~~~~-----~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 213 (796)
.||+||...+.... ......+++...+.++..++|+....... .....+ ..++++.+.|..
T Consensus 286 ~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~-l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 286 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN-LSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred EEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC-CCcccC----HHHHHHHcCCCC
Confidence 68888875432221 12345788988888888888886653221 122222 345666666654
No 183
>PRK10536 hypothetical protein; Provisional
Probab=97.37 E-value=0.00085 Score=65.08 Aligned_cols=135 Identities=15% Similarity=0.181 Sum_probs=72.8
Q ss_pred cccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEE----eCCc-----CCH----H
Q 003773 16 QIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVC----VSDA-----FEE----I 82 (796)
Q Consensus 16 ~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~----~~~~-----~~~----~ 82 (796)
.+.+|......++.++.. ...|.+.|++|+|||+||.+++.+.-..+.|+.++-.. .++. -+. .
T Consensus 56 ~i~p~n~~Q~~~l~al~~---~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~ 132 (262)
T PRK10536 56 PILARNEAQAHYLKAIES---KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFA 132 (262)
T ss_pred cccCCCHHHHHHHHHHhc---CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHH
Confidence 366788888877766542 34999999999999999988877532234465444321 1110 011 1
Q ss_pred HHHHHHHHHhccCCCCCccHHHHHH--------HHHHHhCCceE---EEEEeCCCCCCccChhhHhhhccCCCCCcEEEE
Q 003773 83 RIAKAILEVLDKSASSLGEFQSLMQ--------QTQESIRGKKF---FLVLDDVWDGDFKKWDPFFSCLKNGHHESKILI 151 (796)
Q Consensus 83 ~~~~~i~~~l~~~~~~~~~~~~~~~--------~~~~~l~~~~~---LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iii 151 (796)
-.+.-+.+.+..-.. ....+.... .=..++++..+ +||+|++...+..+... .+-..+.+||+|+
T Consensus 133 p~~~pi~D~L~~~~~-~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~---~ltR~g~~sk~v~ 208 (262)
T PRK10536 133 PYFRPVYDVLVRRLG-ASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKM---FLTRLGENVTVIV 208 (262)
T ss_pred HHHHHHHHHHHHHhC-hHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHH---HHhhcCCCCEEEE
Confidence 112222222221100 001111110 00124566655 99999997665434333 3445567899999
Q ss_pred Eecchh
Q 003773 152 TTRDRS 157 (796)
Q Consensus 152 Tsr~~~ 157 (796)
|--..+
T Consensus 209 ~GD~~Q 214 (262)
T PRK10536 209 NGDITQ 214 (262)
T ss_pred eCChhh
Confidence 865443
No 184
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.37 E-value=4.5e-05 Score=82.59 Aligned_cols=70 Identities=30% Similarity=0.432 Sum_probs=33.0
Q ss_pred ccccccccccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhccccCCCeeecCCc
Q 003773 443 QNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQT 514 (796)
Q Consensus 443 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~ 514 (796)
.+.+..+-..++.+.+|.+|++.+|.|..+...+..+++|++|++++|. +..+. ++..++.|+.|++.+|
T Consensus 81 ~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~-~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 81 QNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLE-GLSTLTLLKELNLSGN 150 (414)
T ss_pred hhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-ccccc-chhhccchhhheeccC
Confidence 3333333333444555555555555555444334455555555555543 33332 2444444555555555
No 185
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.35 E-value=0.00047 Score=80.53 Aligned_cols=119 Identities=20% Similarity=0.204 Sum_probs=65.7
Q ss_pred CcccccHHHHHHHhccc-------C-CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHH
Q 003773 15 LQIEGLDDDNTLALASS-------E-QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAK 86 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~~-------~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 86 (796)
..++|.++.++.+.+.. . .+....++.++|+.|+|||.+|++++.. .-+..+..+-++++.-.+ ..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~----~~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQE----AH 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhh----hh
Confidence 46889999988444332 1 1233457899999999999999988765 212222333334332111 11
Q ss_pred HHHHHhccCCCCCc---cHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCC
Q 003773 87 AILEVLDKSASSLG---EFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNG 143 (796)
Q Consensus 87 ~i~~~l~~~~~~~~---~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~ 143 (796)
.+.+-++.. +... +...+...++ +...-+|+||++...+.+.++.+...+..+
T Consensus 640 ~~~~l~g~~-~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g 695 (852)
T TIGR03345 640 TVSRLKGSP-PGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKG 695 (852)
T ss_pred hhccccCCC-CCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcc
Confidence 111222221 1111 1112223332 245579999999877777777777666544
No 186
>PRK08181 transposase; Validated
Probab=97.33 E-value=0.00045 Score=68.74 Aligned_cols=100 Identities=20% Similarity=0.142 Sum_probs=55.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCce
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKK 117 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 117 (796)
.-+.++|++|+|||.||.++.+... .....++|+.+ .++...+..... .....+.... +. +.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~--~~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~l~~----l~-~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALI--ENGWRVLFTRT------TDLVQKLQVARR-----ELQLESAIAK----LD-KF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHH--HcCCceeeeeH------HHHHHHHHHHHh-----CCcHHHHHHH----Hh-cC
Confidence 4589999999999999999987632 22233556543 344444433211 1122222222 22 33
Q ss_pred EEEEEeCCCCCCccCh--hhHhhhccCCCCCcEEEEEecc
Q 003773 118 FFLVLDDVWDGDFKKW--DPFFSCLKNGHHESKILITTRD 155 (796)
Q Consensus 118 ~LlvlDd~~~~~~~~~--~~l~~~~~~~~~gs~iiiTsr~ 155 (796)
=|||+||+.....+.+ ..+...+.....+..+||||..
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 4999999955333333 2344444332112358898875
No 187
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.32 E-value=0.0026 Score=69.08 Aligned_cols=177 Identities=15% Similarity=0.063 Sum_probs=90.8
Q ss_pred ccCcccccHHHHHHHhccc---------CCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHH
Q 003773 13 LKLQIEGLDDDNTLALASS---------EQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIR 83 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~~---------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 83 (796)
.-.++.|.+...+++.+.. .+-...+-|.++|++|+|||.+|+++++. ....| +-++.+.
T Consensus 226 ~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~~------ 294 (489)
T CHL00195 226 KISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVGK------ 294 (489)
T ss_pred CHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhHH------
Confidence 3456788887776554310 01134567899999999999999999987 22222 2222211
Q ss_pred HHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCc--c------Ch----hhHhhhccCCCCCcEEEE
Q 003773 84 IAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDF--K------KW----DPFFSCLKNGHHESKILI 151 (796)
Q Consensus 84 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~--~------~~----~~l~~~~~~~~~gs~iii 151 (796)
+.. ...+. ......+.+...-...+++|++|+++..-. . .. ..+...+.....+.-||.
T Consensus 295 l~~---~~vGe------se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIa 365 (489)
T CHL00195 295 LFG---GIVGE------SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVA 365 (489)
T ss_pred hcc---cccCh------HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 110 00000 011111112212235789999999954110 0 01 112222222233344556
Q ss_pred Eecchh-----hhhccCccceEEccCCChHhHHHHHHHHhhCCCCC-CCCcchhHHHHHHHHhcCCCc
Q 003773 152 TTRDRS-----VALQMGSIDIISVKELGEEECWSLFKQVAFLGRSF-EDCEKLEPIGRKIACKCKGLP 213 (796)
Q Consensus 152 Tsr~~~-----~~~~~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P 213 (796)
||...+ +.+....+..+.+..-+.++-.++|+.+..+.... ....+ ...+++.+.|..
T Consensus 366 TTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~d----l~~La~~T~GfS 429 (489)
T CHL00195 366 TANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYD----IKKLSKLSNKFS 429 (489)
T ss_pred ecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccC----HHHHHhhcCCCC
Confidence 766532 22222345688888889999999998776432211 11112 455666776654
No 188
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.31 E-value=0.00049 Score=66.45 Aligned_cols=35 Identities=29% Similarity=0.477 Sum_probs=29.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEe
Q 003773 39 IISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCV 75 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 75 (796)
.++|.|.+|+||||++..+... ....|+.+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 5779999999999999988877 6778888777654
No 189
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.30 E-value=0.00069 Score=79.83 Aligned_cols=118 Identities=15% Similarity=0.208 Sum_probs=66.8
Q ss_pred CcccccHHHHHHHhcccC-------C-CCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHH
Q 003773 15 LQIEGLDDDNTLALASSE-------Q-QKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAK 86 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~~~-------~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 86 (796)
..++|.+..++.+..... . +....++.+.|+.|+|||++|+.++... ...-...+.++++.-.+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l--~~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL--FDDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh--cCCCCcEEEEechhhcccch---
Confidence 458999999995444321 1 1224578899999999999999998752 22223345555554222111
Q ss_pred HHHHHhccCCCCCc---cHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccC
Q 003773 87 AILEVLDKSASSLG---EFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKN 142 (796)
Q Consensus 87 ~i~~~l~~~~~~~~---~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~ 142 (796)
+.+.++.. +... +...+...++ .....+|+||++...+.+.+..+...+..
T Consensus 640 -~~~l~g~~-~g~~g~~~~g~l~~~v~---~~p~~vlllDeieka~~~v~~~Ll~~l~~ 693 (852)
T TIGR03346 640 -VARLIGAP-PGYVGYEEGGQLTEAVR---RKPYSVVLFDEVEKAHPDVFNVLLQVLDD 693 (852)
T ss_pred -HHHhcCCC-CCccCcccccHHHHHHH---cCCCcEEEEeccccCCHHHHHHHHHHHhc
Confidence 11222221 1111 1122222222 12345899999988777777777776644
No 190
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.004 Score=62.24 Aligned_cols=153 Identities=18% Similarity=0.121 Sum_probs=85.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIR 114 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 114 (796)
...+-|.+||++|+|||-||++|+++ ....| +.+.. .+-+++ .+| +...+++.+.+.-+
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----Irvvg---SElVqK----YiG-------EGaRlVRelF~lAr 241 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVG---SELVQK----YIG-------EGARLVRELFELAR 241 (406)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEecc---HHHHHH----Hhc-------cchHHHHHHHHHHh
Confidence 34577889999999999999999998 44444 22211 112221 121 12334445554444
Q ss_pred -CceEEEEEeCCCCCC----------ccCh----hhHhhhccCCC--CCcEEEEEecchhhh-----hccCccceEEccC
Q 003773 115 -GKKFFLVLDDVWDGD----------FKKW----DPFFSCLKNGH--HESKILITTRDRSVA-----LQMGSIDIISVKE 172 (796)
Q Consensus 115 -~~~~LlvlDd~~~~~----------~~~~----~~l~~~~~~~~--~gs~iiiTsr~~~~~-----~~~~~~~~~~l~~ 172 (796)
..+.+|++|.++... ..+. -.+...+..+. ...|||.+|...++. +.-..+..+++..
T Consensus 242 ekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfpl 321 (406)
T COG1222 242 EKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPL 321 (406)
T ss_pred hcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCC
Confidence 458999999884311 1111 12233333332 346888888754433 2223456888886
Q ss_pred CChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCc
Q 003773 173 LGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLP 213 (796)
Q Consensus 173 l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 213 (796)
-+.+.-.+.|+-++-+- .....-+ .+.+++.|.|..
T Consensus 322 Pd~~gR~~Il~IHtrkM-~l~~dvd----~e~la~~~~g~s 357 (406)
T COG1222 322 PDEEGRAEILKIHTRKM-NLADDVD----LELLARLTEGFS 357 (406)
T ss_pred CCHHHHHHHHHHHhhhc-cCccCcC----HHHHHHhcCCCc
Confidence 66666667787665322 2222233 345666676654
No 191
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=6.7e-05 Score=72.12 Aligned_cols=84 Identities=17% Similarity=0.310 Sum_probs=52.3
Q ss_pred CCCccceeeccccccccccccccccccccCCCCccceeeccCCCCCCCCC--cCCCCCCCccEEEEcCCCchhhcc-CCC
Q 003773 707 AFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLP--DHLLQTTTLQELSIRGCPILEERY-RGE 783 (796)
Q Consensus 707 ~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~~~-~~~ 783 (796)
.||++..+.+..|| +++... ..++..+|.+.-|+|+.+ ++.+.. ..+..+++|.-|.++++|.....- +..
T Consensus 197 ~Fpnv~sv~v~e~P-lK~~s~----ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~er 270 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGP-LKTESS----EKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGER 270 (418)
T ss_pred hcccchheeeecCc-ccchhh----cccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccccCCcc
Confidence 67777777666653 222222 344556677777777776 444432 235567888888888888766533 345
Q ss_pred CcccccCCCCCCC
Q 003773 784 DYHMISHIPHIKL 796 (796)
Q Consensus 784 ~~~~i~~~~~~~~ 796 (796)
.+..|+++|.|++
T Consensus 271 r~llIaRL~~v~v 283 (418)
T KOG2982|consen 271 RFLLIARLTKVQV 283 (418)
T ss_pred eEEEEeeccceEE
Confidence 6677788887753
No 192
>PRK06921 hypothetical protein; Provisional
Probab=97.25 E-value=0.0015 Score=65.44 Aligned_cols=100 Identities=23% Similarity=0.284 Sum_probs=54.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCc
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGK 116 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 116 (796)
...+.++|..|+|||.||.++++....+. -..++|++.. +++..+.... +.. ....+.+. +
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~~------~l~~~l~~~~----------~~~-~~~~~~~~-~ 177 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPFV------EGFGDLKDDF----------DLL-EAKLNRMK-K 177 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEHH------HHHHHHHHHH----------HHH-HHHHHHhc-C
Confidence 46789999999999999999998732221 2346666542 2333332221 111 11122222 3
Q ss_pred eEEEEEeCCCC-----CCccChh--hHhhhccCC-CCCcEEEEEecc
Q 003773 117 KFFLVLDDVWD-----GDFKKWD--PFFSCLKNG-HHESKILITTRD 155 (796)
Q Consensus 117 ~~LlvlDd~~~-----~~~~~~~--~l~~~~~~~-~~gs~iiiTsr~ 155 (796)
-=||||||+.. ....+|. .+...+... ..+..+||||..
T Consensus 178 ~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 178 VEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 45899999932 2223443 244433321 123458888864
No 193
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.24 E-value=0.0028 Score=73.62 Aligned_cols=118 Identities=18% Similarity=0.200 Sum_probs=66.7
Q ss_pred cCcccccHHHHHHHhcccC-------C-CCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHH
Q 003773 14 KLQIEGLDDDNTLALASSE-------Q-QKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIA 85 (796)
Q Consensus 14 ~~~~vGr~~~~~~l~~~~~-------~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 85 (796)
...++|.++.++.+..... . +....++.++|+.|+|||++|+.++... +...+.++++.-.+..
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~--- 524 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKH--- 524 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhcc---
Confidence 4468899988884443321 1 1234568899999999999999998762 2335555555422211
Q ss_pred HHHHHHhccCCCCCccHHHHHHHHHHHhC-CceEEEEEeCCCCCCccChhhHhhhccC
Q 003773 86 KAILEVLDKSASSLGEFQSLMQQTQESIR-GKKFFLVLDDVWDGDFKKWDPFFSCLKN 142 (796)
Q Consensus 86 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~-~~~~LlvlDd~~~~~~~~~~~l~~~~~~ 142 (796)
.+.+.++... .....++ ...+.+.++ ...-+++||+++..+.+.+..+...+..
T Consensus 525 -~~~~lig~~~-gyvg~~~-~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 525 -TVSRLIGAPP-GYVGFEQ-GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred -cHHHHhcCCC-CCcccch-hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 1222222221 1111111 111222333 3446999999988777777777776654
No 194
>PRK04132 replication factor C small subunit; Provisional
Probab=97.23 E-value=0.009 Score=68.69 Aligned_cols=155 Identities=12% Similarity=-0.031 Sum_probs=98.8
Q ss_pred EEc--CCCCcHHHHHHHHHcCccccccC-CeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceE
Q 003773 42 LFG--LGGIGKTTLAQLAFNNEGVKRKF-DIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKF 118 (796)
Q Consensus 42 I~G--~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 118 (796)
+.| |.++||||+|.+++++.-. ..+ ..++-++.++..+...+.+.+-+...... . -..+.-
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g-~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~-~--------------~~~~~K 632 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFG-ENWRHNFLELNASDERGINVIREKVKEFARTKP-I--------------GGASFK 632 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhc-ccccCeEEEEeCCCcccHHHHHHHHHHHHhcCC-c--------------CCCCCE
Confidence 447 7899999999999987311 122 23667777765555444333322221110 0 012457
Q ss_pred EEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecch-hhhhcc-CccceEEccCCChHhHHHHHHHHhhCCCCCCCCc
Q 003773 119 FLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDR-SVALQM-GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCE 196 (796)
Q Consensus 119 LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~-~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~ 196 (796)
++|+|+++..+.+....+...+......+++|+++.+. .+...+ .....+.+.+++.++..+.+.+.+...+..
T Consensus 633 VvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~---- 708 (846)
T PRK04132 633 IIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE---- 708 (846)
T ss_pred EEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC----
Confidence 99999998877667777887777655667777777653 232222 235789999999999988887766422211
Q ss_pred chhHHHHHHHHhcCCCchhH
Q 003773 197 KLEPIGRKIACKCKGLPLAA 216 (796)
Q Consensus 197 ~~~~~~~~i~~~~~g~PLal 216 (796)
-..+....|++.++|.+...
T Consensus 709 i~~e~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 709 LTEEGLQAILYIAEGDMRRA 728 (846)
T ss_pred CCHHHHHHHHHHcCCCHHHH
Confidence 11456788999999977443
No 195
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.22 E-value=6.3e-05 Score=63.72 Aligned_cols=71 Identities=24% Similarity=0.335 Sum_probs=34.1
Q ss_pred ccccccccccccCc-cccceEecCCCCccccchhhhccCCccEeeccccccccccchhhccccCCCeeecCCc
Q 003773 443 QNFIREIPENIGKL-IHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQT 514 (796)
Q Consensus 443 ~~~~~~lp~~~~~l-~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~ 514 (796)
+|.+.++|..+... +-+..|++++|.|..+|..+..++.|+.|+++.|+ +...|..+..|.+|-.|+..++
T Consensus 62 ~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 62 DNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred cchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCCCC
Confidence 44444444444332 24455555555555555555555555555555444 3344444444444444444444
No 196
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.008 Score=62.04 Aligned_cols=93 Identities=12% Similarity=0.118 Sum_probs=64.7
Q ss_pred CceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecch-hhhhcc-CccceEEccCCChHhHHHHHHHHhhCCCCC
Q 003773 115 GKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDR-SVALQM-GSIDIISVKELGEEECWSLFKQVAFLGRSF 192 (796)
Q Consensus 115 ~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~-~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~ 192 (796)
++.-++|+|+++.........+...+..-.+++.+|++|.+. .+...+ .....+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 556688999998888788888888888777777766666653 333222 235689999999999999887642 1
Q ss_pred CCCcchhHHHHHHHHhcCCCchhHHHH
Q 003773 193 EDCEKLEPIGRKIACKCKGLPLAAKVI 219 (796)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~g~PLal~~~ 219 (796)
. . ...++..++|.|.....+
T Consensus 206 ~---~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 A---D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred C---h----HHHHHHHcCCCHHHHHHH
Confidence 1 1 223577889999754433
No 197
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.19 E-value=0.0012 Score=71.70 Aligned_cols=80 Identities=21% Similarity=0.294 Sum_probs=58.2
Q ss_pred CCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHH
Q 003773 32 EQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQE 111 (796)
Q Consensus 32 ~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 111 (796)
.+.+..+++.++|++|+||||||..++++ ..|. |+-|.+++..+...+-..|...+.......
T Consensus 321 s~RP~kKilLL~GppGlGKTTLAHViAkq----aGYs-VvEINASDeRt~~~v~~kI~~avq~~s~l~------------ 383 (877)
T KOG1969|consen 321 SKRPPKKILLLCGPPGLGKTTLAHVIAKQ----AGYS-VVEINASDERTAPMVKEKIENAVQNHSVLD------------ 383 (877)
T ss_pred cCCCccceEEeecCCCCChhHHHHHHHHh----cCce-EEEecccccccHHHHHHHHHHHHhhccccc------------
Confidence 34566789999999999999999998876 4443 677888888787777777776654332111
Q ss_pred HhCCceEEEEEeCCCCCC
Q 003773 112 SIRGKKFFLVLDDVWDGD 129 (796)
Q Consensus 112 ~l~~~~~LlvlDd~~~~~ 129 (796)
..+++.-+|+|.++...
T Consensus 384 -adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 384 -ADSRPVCLVIDEIDGAP 400 (877)
T ss_pred -cCCCcceEEEecccCCc
Confidence 12678889999996543
No 198
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.17 E-value=0.0014 Score=66.95 Aligned_cols=102 Identities=15% Similarity=0.257 Sum_probs=61.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRG 115 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 115 (796)
..+-+.|+|..|+|||.||.++++... +..+. +.++.+. .+...+....... ...+.++. + .
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~-v~~~~~~------~l~~~lk~~~~~~-----~~~~~l~~----l-~ 216 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELA-KKGVS-STLLHFP------EFIRELKNSISDG-----SVKEKIDA----V-K 216 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCC-EEEEEHH------HHHHHHHHHHhcC-----cHHHHHHH----h-c
Confidence 346799999999999999999999843 23333 5555442 4555555444211 12222222 2 2
Q ss_pred ceEEEEEeCCCCCCccChhh--HhhhccC-C-CCCcEEEEEecc
Q 003773 116 KKFFLVLDDVWDGDFKKWDP--FFSCLKN-G-HHESKILITTRD 155 (796)
Q Consensus 116 ~~~LlvlDd~~~~~~~~~~~--l~~~~~~-~-~~gs~iiiTsr~ 155 (796)
+-=||||||+.......|.. +...+.. . ..+-.+|+||.-
T Consensus 217 ~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 217 EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 45689999997666667753 4444422 1 234458888863
No 199
>PRK08118 topology modulation protein; Reviewed
Probab=97.17 E-value=0.00021 Score=66.02 Aligned_cols=35 Identities=34% Similarity=0.603 Sum_probs=27.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccc-ccCCeEEE
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVK-RKFDIVIW 72 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~w 72 (796)
+.|.|+|++|+||||+|+.+++..... .+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358899999999999999999874433 45676765
No 200
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.16 E-value=0.0017 Score=60.88 Aligned_cols=117 Identities=21% Similarity=0.308 Sum_probs=69.4
Q ss_pred CcccccHHHHHHHhccc---CCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHH
Q 003773 15 LQIEGLDDDNTLALASS---EQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEV 91 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~~---~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 91 (796)
..++|-|...+.|+++. ..+...--|.+||..|+|||.|++++.+. .....-.. |.+.+. .
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e--~~~~glrL--VEV~k~--d---------- 123 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNE--YADEGLRL--VEVDKE--D---------- 123 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHH--HHhcCCeE--EEEcHH--H----------
Confidence 45899999999777662 22334456779999999999999999887 33333222 222221 1
Q ss_pred hccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCC-CccChhhHhhhccCC---CCCcEEEEEecch
Q 003773 92 LDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDG-DFKKWDPFFSCLKNG---HHESKILITTRDR 156 (796)
Q Consensus 92 l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~-~~~~~~~l~~~~~~~---~~gs~iiiTsr~~ 156 (796)
..+...++..++ ...+||+|+.||+..+ ..+.+..+...+..+ .+...++..|-++
T Consensus 124 -------l~~Lp~l~~~Lr--~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 124 -------LATLPDLVELLR--ARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred -------HhhHHHHHHHHh--cCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 111222222222 2478999999999553 334555566555443 3455555555543
No 201
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.16 E-value=0.01 Score=61.39 Aligned_cols=162 Identities=12% Similarity=0.049 Sum_probs=98.5
Q ss_pred HHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccc--------------------ccCCeEEEEEeCCcCCHHHHH
Q 003773 26 LALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVK--------------------RKFDIVIWVCVSDAFEEIRIA 85 (796)
Q Consensus 26 ~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--------------------~~f~~~~wv~~~~~~~~~~~~ 85 (796)
.+......+.-...+.++|+.|+||+++|.+++...--. .|-|. .++.-..
T Consensus 13 ~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~-------- 83 (334)
T PRK07993 13 QLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLTPEK-------- 83 (334)
T ss_pred HHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEeccc--------
Confidence 344444434456789999999999999998877752111 11121 1111000
Q ss_pred HHHHHHhccCCCCCccHHHHHHHHHHHh-----CCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecchh-hh
Q 003773 86 KAILEVLDKSASSLGEFQSLMQQTQESI-----RGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDRS-VA 159 (796)
Q Consensus 86 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l-----~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~-~~ 159 (796)
......++++.+ +.+.+ .+++-++|+|+++.........+...+..-..++.+|++|.+.+ +.
T Consensus 84 ----------~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lL 152 (334)
T PRK07993 84 ----------GKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLL 152 (334)
T ss_pred ----------ccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhCh
Confidence 001122233222 22222 36677999999988777777888888877667777777776643 33
Q ss_pred hc-cCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhH
Q 003773 160 LQ-MGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAA 216 (796)
Q Consensus 160 ~~-~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 216 (796)
.. ......+.+.+++.+++.+.+.+.. + .+ .+.+..+++.++|.|...
T Consensus 153 pTIrSRCq~~~~~~~~~~~~~~~L~~~~---~--~~----~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 153 ATLRSRCRLHYLAPPPEQYALTWLSREV---T--MS----QDALLAALRLSAGAPGAA 201 (334)
T ss_pred HHHHhccccccCCCCCHHHHHHHHHHcc---C--CC----HHHHHHHHHHcCCCHHHH
Confidence 22 2235678999999999988886532 1 01 233677899999999643
No 202
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.14 E-value=0.015 Score=60.95 Aligned_cols=28 Identities=21% Similarity=0.320 Sum_probs=24.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCcc
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNNEG 62 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 62 (796)
....+|+|.|.-|+|||++.+++.+...
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5678999999999999999999888743
No 203
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0035 Score=61.45 Aligned_cols=27 Identities=33% Similarity=0.449 Sum_probs=24.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccc
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGV 63 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 63 (796)
.|+|.++|++|.|||+|+++++++..+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSI 203 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSI 203 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhhee
Confidence 489999999999999999999998644
No 204
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.10 E-value=0.022 Score=59.26 Aligned_cols=202 Identities=12% Similarity=0.097 Sum_probs=117.3
Q ss_pred cHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHH-HHHHcCccccccCCeEEEEEeCCcC---CHHHHHHHHHHHhccC
Q 003773 20 LDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLA-QLAFNNEGVKRKFDIVIWVCVSDAF---EEIRIAKAILEVLDKS 95 (796)
Q Consensus 20 r~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa-~~~~~~~~~~~~f~~~~wv~~~~~~---~~~~~~~~i~~~l~~~ 95 (796)
|.+.++.|-.|+... .-..|.|.||-|.||+.|+ .++..+ .+.++.++|.+-. +...+.+.++.++|-.
T Consensus 1 R~e~~~~L~~wL~e~-~~TFIvV~GPrGSGK~elV~d~~L~~------r~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNEN-PNTFIVVQGPRGSGKRELVMDHVLKD------RKNVLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcC-CCeEEEEECCCCCCccHHHHHHHHhC------CCCEEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 455566555555433 2358999999999999999 676655 1227777776532 3455666666665411
Q ss_pred --------------------CCC----CccHHHHHH--------HHHH-------------------Hh---CCceEEEE
Q 003773 96 --------------------ASS----LGEFQSLMQ--------QTQE-------------------SI---RGKKFFLV 121 (796)
Q Consensus 96 --------------------~~~----~~~~~~~~~--------~~~~-------------------~l---~~~~~Llv 121 (796)
... ....+.-+. .+++ ++ ..++=+||
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 000 011111111 1111 00 02256899
Q ss_pred EeCCCCCC---------ccChhhHhhhccCCCCCcEEEEEecchhh----hhccC--ccceEEccCCChHhHHHHHHHHh
Q 003773 122 LDDVWDGD---------FKKWDPFFSCLKNGHHESKILITTRDRSV----ALQMG--SIDIISVKELGEEECWSLFKQVA 186 (796)
Q Consensus 122 lDd~~~~~---------~~~~~~l~~~~~~~~~gs~iiiTsr~~~~----~~~~~--~~~~~~l~~l~~~e~~~lf~~~~ 186 (796)
+|++-... ..+|... +-. .+=.+||++|-+... ...+. ....+.+...+.+.|.++...+.
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~---Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L 229 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAAS---LVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQL 229 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHH---HHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHh
Confidence 99984421 1122221 111 233568888877433 33332 35678889999999999998886
Q ss_pred hCCCCC------------CCC----cchhHHHHHHHHhcCCCchhHHHHHHHHhcCCCHHHH
Q 003773 187 FLGRSF------------EDC----EKLEPIGRKIACKCKGLPLAAKVIGNLLRSKRTVSEW 232 (796)
Q Consensus 187 ~~~~~~------------~~~----~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w 232 (796)
...... ... .....-....+...||=-.-|..+++.++...++.+-
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~A 291 (431)
T PF10443_consen 230 DEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEA 291 (431)
T ss_pred cccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHH
Confidence 432110 000 1233345678889999999999999999988765543
No 205
>PRK06526 transposase; Provisional
Probab=97.08 E-value=0.00081 Score=66.59 Aligned_cols=101 Identities=19% Similarity=0.217 Sum_probs=53.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCc
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGK 116 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 116 (796)
.+-+.|+|++|+|||+||.++...... ..+. +.|+ +..++...+..... ..... ..+.+. .+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~-~g~~-v~f~------t~~~l~~~l~~~~~-----~~~~~---~~l~~l--~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQ-AGHR-VLFA------TAAQWVARLAAAHH-----AGRLQ---AELVKL--GR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHH-CCCc-hhhh------hHHHHHHHHHHHHh-----cCcHH---HHHHHh--cc
Confidence 356899999999999999998876322 2222 3333 23344444433211 11111 222222 23
Q ss_pred eEEEEEeCCCCCCccChh--hHhhhccC-CCCCcEEEEEecch
Q 003773 117 KFFLVLDDVWDGDFKKWD--PFFSCLKN-GHHESKILITTRDR 156 (796)
Q Consensus 117 ~~LlvlDd~~~~~~~~~~--~l~~~~~~-~~~gs~iiiTsr~~ 156 (796)
.-+||+||+.....+.+. .+...+.. ...++ +|+||...
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 458899999643222222 23333322 22344 88888753
No 206
>PRK04296 thymidine kinase; Provisional
Probab=97.08 E-value=0.0011 Score=62.97 Aligned_cols=114 Identities=12% Similarity=0.046 Sum_probs=62.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCC--CccHHHHHHHHHHHhCC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASS--LGEFQSLMQQTQESIRG 115 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~l~~ 115 (796)
.++.|+|+.|.||||+|..++.+. ..+-..++.+. ..++.+.....++.+++..... ....++....+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~--~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY--EERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH--HHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 478899999999999998877763 22233344442 1112222233445555432221 2334455555554 333
Q ss_pred ceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecchhh
Q 003773 116 KKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDRSV 158 (796)
Q Consensus 116 ~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~~ 158 (796)
+.-+||+|.+..-+.++...+...+ ...|..||+|.++.+.
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 4558999999543222233333332 2456789999887543
No 207
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.07 E-value=0.002 Score=67.63 Aligned_cols=142 Identities=14% Similarity=0.167 Sum_probs=82.1
Q ss_pred cccccHHHHHHHhcccCCC-CCcEEEEEEcCCCCcHHHHHHHHHcCccccc-------------------cCCeEEEEEe
Q 003773 16 QIEGLDDDNTLALASSEQQ-KGLRIISLFGLGGIGKTTLAQLAFNNEGVKR-------------------KFDIVIWVCV 75 (796)
Q Consensus 16 ~~vGr~~~~~~l~~~~~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~ 75 (796)
+++|-+.....+..+.... .....+.++|++|+||||+|.++++...-.. ...-+..+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 4677777777666654422 2344699999999999999999988632111 1122333333
Q ss_pred CCcCC---HHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEE
Q 003773 76 SDAFE---EIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILIT 152 (796)
Q Consensus 76 ~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiT 152 (796)
+.... ..+..+++.+...... ..++.-++++|+++....+.-..+...+......+.+|++
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~ 145 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESP----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILI 145 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCC----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEE
Confidence 33222 1222222222221110 0356789999999776666666777777776777888888
Q ss_pred ecch-hhhhcc-CccceEEccCC
Q 003773 153 TRDR-SVALQM-GSIDIISVKEL 173 (796)
Q Consensus 153 sr~~-~~~~~~-~~~~~~~l~~l 173 (796)
|... .+...+ .....+++.+.
T Consensus 146 ~n~~~~il~tI~SRc~~i~f~~~ 168 (325)
T COG0470 146 TNDPSKILPTIRSRCQRIRFKPP 168 (325)
T ss_pred cCChhhccchhhhcceeeecCCc
Confidence 8743 222211 12346666663
No 208
>PRK09183 transposase/IS protein; Provisional
Probab=97.07 E-value=0.0017 Score=64.86 Aligned_cols=100 Identities=19% Similarity=0.233 Sum_probs=52.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCce
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKK 117 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 117 (796)
..+.|+|++|+|||+||.+++..... ..+ .+.++. ...+...+...... .... ..+++. ..+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~-~G~-~v~~~~------~~~l~~~l~~a~~~-----~~~~---~~~~~~-~~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVR-AGI-KVRFTT------AADLLLQLSTAQRQ-----GRYK---TTLQRG-VMAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH-cCC-eEEEEe------HHHHHHHHHHHHHC-----CcHH---HHHHHH-hcCC
Confidence 46889999999999999998765322 222 344443 22333333222111 1111 222222 2345
Q ss_pred EEEEEeCCCCCCccChh--hHhhhccC-CCCCcEEEEEecc
Q 003773 118 FFLVLDDVWDGDFKKWD--PFFSCLKN-GHHESKILITTRD 155 (796)
Q Consensus 118 ~LlvlDd~~~~~~~~~~--~l~~~~~~-~~~gs~iiiTsr~ 155 (796)
-++|+||+.......+. .+...+.. ...++ +||||..
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 69999999653333332 34444432 12344 8888864
No 209
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.07 E-value=0.0035 Score=64.51 Aligned_cols=99 Identities=12% Similarity=0.104 Sum_probs=60.8
Q ss_pred HHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCe-EEEEEeCC-cCCHHHHHHHHHHHhccCCCCCccHH
Q 003773 26 LALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDI-VIWVCVSD-AFEEIRIAKAILEVLDKSASSLGEFQ 103 (796)
Q Consensus 26 ~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~ 103 (796)
++++.+..-+.-+.+.|+|.+|+|||||++.+++.... .+-+. ++|+.+.+ ..++.++.+.+...+...........
T Consensus 122 RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~-~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~ 200 (380)
T PRK12608 122 RVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA-NHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDE 200 (380)
T ss_pred hhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHH
Confidence 44444332223356789999999999999998886322 22344 46666655 45678888888877765432221111
Q ss_pred -----HHHHHHHHHh--CCceEEEEEeCC
Q 003773 104 -----SLMQQTQESI--RGKKFFLVLDDV 125 (796)
Q Consensus 104 -----~~~~~~~~~l--~~~~~LlvlDd~ 125 (796)
.....+.+++ .+++.+||+|++
T Consensus 201 ~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 201 HIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 1122222333 589999999999
No 210
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.06 E-value=0.00028 Score=63.47 Aligned_cols=88 Identities=24% Similarity=0.156 Sum_probs=46.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceEE
Q 003773 40 ISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKFF 119 (796)
Q Consensus 40 v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~L 119 (796)
|.++|++|+|||++|+.+++.. . ..+.-+.++...+..++....--. .. ... .....+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~--~---~~~~~i~~~~~~~~~dl~g~~~~~-~~-~~~-~~~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL--G---RPVIRINCSSDTTEEDLIGSYDPS-NG-QFE-FKDGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH--T---CEEEEEE-TTTSTHHHHHCEEET--TT-TTC-EEE-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh--h---cceEEEEeccccccccceeeeeec-cc-ccc-cccccccccc-----cceeE
Confidence 6799999999999999998762 1 123445677766666554221111 00 000 0000000001 17899
Q ss_pred EEEeCCCCCCccChhhHhhhc
Q 003773 120 LVLDDVWDGDFKKWDPFFSCL 140 (796)
Q Consensus 120 lvlDd~~~~~~~~~~~l~~~~ 140 (796)
+|||++.....+.++.+...+
T Consensus 69 l~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHH
T ss_pred EEECCcccCCHHHHHHHHHHH
Confidence 999999665444444444443
No 211
>PRK07261 topology modulation protein; Provisional
Probab=97.06 E-value=0.0015 Score=60.81 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.|.|+|++|+||||+|+++...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999998765
No 212
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.06 E-value=0.0022 Score=62.31 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=36.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHH
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAK 86 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 86 (796)
.-+++.|+|++|+|||++|.+++.. ....-..++|++... ++...+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 4579999999999999999888765 333346799998875 55555444
No 213
>PRK12377 putative replication protein; Provisional
Probab=97.04 E-value=0.0011 Score=65.24 Aligned_cols=102 Identities=21% Similarity=0.090 Sum_probs=56.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCc
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGK 116 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 116 (796)
...+.++|.+|+|||+||.++++... .....++++++. ++...+....... ....+ +.+.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~--~~g~~v~~i~~~------~l~~~l~~~~~~~----~~~~~----~l~~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL--AKGRSVIVVTVP------DVMSRLHESYDNG----QSGEK----FLQEL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEEEHH------HHHHHHHHHHhcc----chHHH----HHHHh-cC
Confidence 35789999999999999999999843 333335666543 3444444333211 11112 22222 35
Q ss_pred eEEEEEeCCCCCCccChh--hHhhhccCC-CCCcEEEEEecc
Q 003773 117 KFFLVLDDVWDGDFKKWD--PFFSCLKNG-HHESKILITTRD 155 (796)
Q Consensus 117 ~~LlvlDd~~~~~~~~~~--~l~~~~~~~-~~gs~iiiTsr~ 155 (796)
-=|||+||+.......|. .+...+... ...--+||||..
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 568999999554334443 233333221 122237888763
No 214
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.04 E-value=0.01 Score=59.68 Aligned_cols=42 Identities=26% Similarity=0.270 Sum_probs=28.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHH
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRI 84 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 84 (796)
+-|.+.|++|+|||++|+.++.. ... ..+.+++....+..++
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~--lg~---~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARK--RDR---PVMLINGDAELTTSDL 63 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH--hCC---CEEEEeCCccCCHHHH
Confidence 35679999999999999999864 222 2445556555444443
No 215
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.03 E-value=0.0013 Score=65.75 Aligned_cols=137 Identities=22% Similarity=0.223 Sum_probs=74.9
Q ss_pred ccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcC-ccccccCCeEEE----EEeCCc---------CCHH
Q 003773 17 IEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNN-EGVKRKFDIVIW----VCVSDA---------FEEI 82 (796)
Q Consensus 17 ~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~-~~~~~~f~~~~w----v~~~~~---------~~~~ 82 (796)
+-+|..+....++.+- ++++..|.+.|.+|.|||.||.++.-. ...++.|+.++- +.++++ ..+.
T Consensus 226 i~prn~eQ~~ALdlLl-d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~ 304 (436)
T COG1875 226 IRPRNAEQRVALDLLL-DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMG 304 (436)
T ss_pred cCcccHHHHHHHHHhc-CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhcc
Confidence 4456666664444332 468899999999999999888544332 223455544332 123322 1223
Q ss_pred HHHHHHHHHhccCCCCCccHHHHHHHHH----------HHhCCc---eEEEEEeCCCCCCccChhhHhhhccCCCCCcEE
Q 003773 83 RIAKAILEVLDKSASSLGEFQSLMQQTQ----------ESIRGK---KFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKI 149 (796)
Q Consensus 83 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~----------~~l~~~---~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~i 149 (796)
-+.+.|.+.+..-.......++..+.+- .+++|+ +-+||+|...+-.. ..+...+-..+.||||
T Consensus 305 PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp---heikTiltR~G~GsKI 381 (436)
T COG1875 305 PWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP---HELKTILTRAGEGSKI 381 (436)
T ss_pred chHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH---HHHHHHHHhccCCCEE
Confidence 3455555544321111111122222221 223444 45899999966443 3345556678899999
Q ss_pred EEEecchh
Q 003773 150 LITTRDRS 157 (796)
Q Consensus 150 iiTsr~~~ 157 (796)
|.|--..+
T Consensus 382 Vl~gd~aQ 389 (436)
T COG1875 382 VLTGDPAQ 389 (436)
T ss_pred EEcCCHHH
Confidence 99875443
No 216
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.02 E-value=0.0088 Score=59.24 Aligned_cols=171 Identities=16% Similarity=0.177 Sum_probs=94.8
Q ss_pred ccCcccccHHHHHHHhccc---CCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccC-CeEEEEEeCCcCCH-HHHHHH
Q 003773 13 LKLQIEGLDDDNTLALASS---EQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKF-DIVIWVCVSDAFEE-IRIAKA 87 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~~---~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~-~~~~~~ 87 (796)
+...++|-..+.+.+-+++ .-.++...|.|+|+.|.|||+|......+ .+.| +..+-|........ .-.++.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALKG 98 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHHH
Confidence 5667889888877333221 11234456779999999999999766665 2223 33444444443322 223455
Q ss_pred HHHHhcc----CCCCCccHHHHHHHHHHHhC------CceEEEEEeCCCCCCccChhhHhh-hcc----CCCCCcEEEEE
Q 003773 88 ILEVLDK----SASSLGEFQSLMQQTQESIR------GKKFFLVLDDVWDGDFKKWDPFFS-CLK----NGHHESKILIT 152 (796)
Q Consensus 88 i~~~l~~----~~~~~~~~~~~~~~~~~~l~------~~~~LlvlDd~~~~~~~~~~~l~~-~~~----~~~~gs~iiiT 152 (796)
|.+++.. .........+....+...++ +.++++|+|.++.-....-+.+.. .|. ...|-+-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 5555543 22223333444444444443 346889998875421111111111 111 12345667789
Q ss_pred ecc-------hhhhhccCccceEEccCCChHhHHHHHHHHh
Q 003773 153 TRD-------RSVALQMGSIDIISVKELGEEECWSLFKQVA 186 (796)
Q Consensus 153 sr~-------~~~~~~~~~~~~~~l~~l~~~e~~~lf~~~~ 186 (796)
||- +.|........++-++.++-++...++++..
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 995 3444444444467778888889988888776
No 217
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.02 E-value=0.00086 Score=62.61 Aligned_cols=101 Identities=22% Similarity=0.394 Sum_probs=51.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRG 115 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 115 (796)
...-+.++|..|+|||.||.++++.... ..+ .+.|+.. .+++..+.. ... .....+..+ .+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~-~v~f~~~------~~L~~~l~~----~~~-~~~~~~~~~----~l~~ 108 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR-KGY-SVLFITA------SDLLDELKQ----SRS-DGSYEELLK----RLKR 108 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH-TT---EEEEEH------HHHHHHHHC----CHC-CTTHCHHHH----HHHT
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc-CCc-ceeEeec------Cceeccccc----ccc-ccchhhhcC----cccc
Confidence 3457999999999999999999886332 233 3566643 344444432 211 112222222 2222
Q ss_pred ceEEEEEeCCCCCCccChhh--HhhhccCC-CCCcEEEEEecc
Q 003773 116 KKFFLVLDDVWDGDFKKWDP--FFSCLKNG-HHESKILITTRD 155 (796)
Q Consensus 116 ~~~LlvlDd~~~~~~~~~~~--l~~~~~~~-~~gs~iiiTsr~ 155 (796)
-=|+||||+-......|.. +...+... ..+ .+||||..
T Consensus 109 -~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 109 -VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp -SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred -ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 3477799996544333321 22222211 123 48888874
No 218
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0011 Score=74.17 Aligned_cols=156 Identities=17% Similarity=0.155 Sum_probs=86.2
Q ss_pred cCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc-----cCCeEEEEEeCCcCCHHHHHHHH
Q 003773 14 KLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKR-----KFDIVIWVCVSDAFEEIRIAKAI 88 (796)
Q Consensus 14 ~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-----~f~~~~wv~~~~~~~~~~~~~~i 88 (796)
-+.++|||+|+.+.++-+....+... .++|.+|+|||++|.-++.+.-... ....++-.+++ .
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNP-vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g------~----- 236 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNP-VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG------S----- 236 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCC-eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHH------H-----
Confidence 45699999999977766532222222 3689999999999988777621111 11112212111 1
Q ss_pred HHHhccCCCCCccHHHHHHHHHHHhC-CceEEEEEeCCCCC----C-----ccChhhHhhhccCCCCCcEEEEEecchhh
Q 003773 89 LEVLDKSASSLGEFQSLMQQTQESIR-GKKFFLVLDDVWDG----D-----FKKWDPFFSCLKNGHHESKILITTRDRSV 158 (796)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~~~~~~~l~-~~~~LlvlDd~~~~----~-----~~~~~~l~~~~~~~~~gs~iiiTsr~~~~ 158 (796)
+.....-..+.++..+.+.+.++ .++.++++|.+.+. . .+.-..+.+.+..+. --.|=.||-++ .
T Consensus 237 ---LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe-L~~IGATT~~E-Y 311 (786)
T COG0542 237 ---LVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE-LRCIGATTLDE-Y 311 (786)
T ss_pred ---HhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-eEEEEeccHHH-H
Confidence 11112334455665555555553 44899999998541 1 112222333333322 12244555442 2
Q ss_pred hhc-------cCccceEEccCCChHhHHHHHHHHh
Q 003773 159 ALQ-------MGSIDIISVKELGEEECWSLFKQVA 186 (796)
Q Consensus 159 ~~~-------~~~~~~~~l~~l~~~e~~~lf~~~~ 186 (796)
-.. -...+.+.+...+.+++...++...
T Consensus 312 Rk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 312 RKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 111 1236799999999999999987543
No 219
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.97 E-value=0.0011 Score=62.62 Aligned_cols=118 Identities=21% Similarity=0.231 Sum_probs=55.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCc--CC----HHH-------HHHHHHHHhccCCCCCccH
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDA--FE----EIR-------IAKAILEVLDKSASSLGEF 102 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~----~~~-------~~~~i~~~l~~~~~~~~~~ 102 (796)
...+|.+.|++|+|||.||.+.+-+.-..+.|+.++++.-.-. .+ +.+ ...-+.+.+..-. .....
T Consensus 18 ~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~-~~~~~ 96 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELF-GKEKL 96 (205)
T ss_dssp H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS--TTCH
T ss_pred hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHh-ChHhH
Confidence 3458999999999999999877766545588888887632211 00 011 1111222222111 11112
Q ss_pred HHHHHH------HHHHhCCc---eEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecchh
Q 003773 103 QSLMQQ------TQESIRGK---KFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDRS 157 (796)
Q Consensus 103 ~~~~~~------~~~~l~~~---~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~ 157 (796)
+...+. -..+++|+ ..+||+|++.+.+..++..+ +-..+.+||||++--..+
T Consensus 97 ~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii~~GD~~Q 157 (205)
T PF02562_consen 97 EELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIGEGSKIIITGDPSQ 157 (205)
T ss_dssp HHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEEEEE----
T ss_pred HHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH---HcccCCCcEEEEecCcee
Confidence 221110 00233444 46999999977655554444 455678899999875543
No 220
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.97 E-value=0.0025 Score=75.03 Aligned_cols=121 Identities=16% Similarity=0.214 Sum_probs=66.3
Q ss_pred cCcccccHHHHHHHhccc-------C-CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHH
Q 003773 14 KLQIEGLDDDNTLALASS-------E-QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIA 85 (796)
Q Consensus 14 ~~~~vGr~~~~~~l~~~~-------~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 85 (796)
...++|.++.++.+.... . .+.....+.++|+.|+|||++|+.+++.. -..-...+-++.+.-.+...
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l--~~~~~~~~~~d~s~~~~~~~-- 583 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF--FGSEDAMIRLDMSEYMEKHT-- 583 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh--cCCccceEEEEchhcccccc--
Confidence 356889999888554332 1 12224567799999999999999998752 11112344445443222111
Q ss_pred HHHHHHhccCCCCCccHHHHHHHHHHHhCCce-EEEEEeCCCCCCccChhhHhhhccC
Q 003773 86 KAILEVLDKSASSLGEFQSLMQQTQESIRGKK-FFLVLDDVWDGDFKKWDPFFSCLKN 142 (796)
Q Consensus 86 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~-~LlvlDd~~~~~~~~~~~l~~~~~~ 142 (796)
+.+.++.. +.....++ ...+.+.++.++ .+++||+++..+.+.+..+.+.+..
T Consensus 584 --~~~l~g~~-~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~ 637 (821)
T CHL00095 584 --VSKLIGSP-PGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDD 637 (821)
T ss_pred --HHHhcCCC-CcccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhcc
Confidence 11122221 11111111 012233344344 5889999988777777777776654
No 221
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.97 E-value=0.00069 Score=76.77 Aligned_cols=109 Identities=23% Similarity=0.234 Sum_probs=77.7
Q ss_pred CCCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCcccccccccccccCccccceEecCCCCccccc
Q 003773 394 EFNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLP 473 (796)
Q Consensus 394 ~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp 473 (796)
-+|.|++|.+.+.. +........+.++++|+.||++ ++.+..+ ..+++|++|+.|.+++-.+..-.
T Consensus 146 ~LPsL~sL~i~~~~-----~~~~dF~~lc~sFpNL~sLDIS--------~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~ 211 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQ-----FDNDDFSQLCASFPNLRSLDIS--------GTNISNL-SGISRLKNLQVLSMRNLEFESYQ 211 (699)
T ss_pred hCcccceEEecCce-----ecchhHHHHhhccCccceeecC--------CCCccCc-HHHhccccHHHHhccCCCCCchh
Confidence 47888888887654 2233345567889999999999 6666666 56889999999999887776433
Q ss_pred --hhhhccCCccEeecccccccccc--c----hhhccccCCCeeecCCccc
Q 003773 474 --ETLCELYNLQKLAVRWCTNLREL--P----AGIGKLMNMRSLMNGQTEK 516 (796)
Q Consensus 474 --~~i~~l~~L~~L~l~~~~~~~~l--p----~~~~~l~~L~~L~l~~~~~ 516 (796)
..+.+|++|++||++.......- . +.-..|++|+.||.+++..
T Consensus 212 ~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 212 DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 36788999999999975543221 1 1123488999999887743
No 222
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.97 E-value=0.0024 Score=62.61 Aligned_cols=103 Identities=16% Similarity=0.150 Sum_probs=57.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCc
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGK 116 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 116 (796)
...+.++|.+|+|||+||.++++... ..-..++++++ .++...+...... ......+ +.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~--~~g~~v~~it~------~~l~~~l~~~~~~---~~~~~~~----~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL--LRGKSVLIITV------ADIMSAMKDTFSN---SETSEEQ----LLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEH------HHHHHHHHHHHhh---ccccHHH----HHHHhc-c
Confidence 35788999999999999999998733 22234666643 3444444433321 1111122 223344 3
Q ss_pred eEEEEEeCCCCCCccChhh--HhhhccC-CCCCcEEEEEecc
Q 003773 117 KFFLVLDDVWDGDFKKWDP--FFSCLKN-GHHESKILITTRD 155 (796)
Q Consensus 117 ~~LlvlDd~~~~~~~~~~~--l~~~~~~-~~~gs~iiiTsr~ 155 (796)
.=+||+||+.......|.. +...+.. ....-.+||||..
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4478889996654555553 3333322 1122347777763
No 223
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.97 E-value=0.0027 Score=62.46 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=34.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHH
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRI 84 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 84 (796)
.-.++.|+|.+|+|||++|.+++.. ....-..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 4579999999999999999888765 32334668999887 5555444
No 224
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.96 E-value=0.0076 Score=62.12 Aligned_cols=71 Identities=8% Similarity=0.153 Sum_probs=46.8
Q ss_pred CceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecchh-hhhcc-CccceEEccCCChHhHHHHHHHH
Q 003773 115 GKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDRS-VALQM-GSIDIISVKELGEEECWSLFKQV 185 (796)
Q Consensus 115 ~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~-~~~~~-~~~~~~~l~~l~~~e~~~lf~~~ 185 (796)
+++-++|+|++...+......+...+.....++.+|++|.+.+ +...+ .....+.+.+++.+++.+.+.+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 4445556788877665566666666655445566777777643 33222 22568889999999999888653
No 225
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.022 Score=59.91 Aligned_cols=149 Identities=21% Similarity=0.264 Sum_probs=82.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIR 114 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 114 (796)
.....+.+.|++|+|||+||..++.. ..|..+=-++..+.. +.+ +.+....+.....+.-+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe~mi-------------G~s--EsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPEDMI-------------GLS--ESAKCAHIKKIFEDAYK 596 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChHHcc-------------Ccc--HHHHHHHHHHHHHHhhc
Confidence 34567889999999999999999876 445433222111100 100 01111122223334456
Q ss_pred CceEEEEEeCCCCCCccCh------------hhHhhhccCC-CCCcE--EEEEecchhhhhccCc----cceEEccCCCh
Q 003773 115 GKKFFLVLDDVWDGDFKKW------------DPFFSCLKNG-HHESK--ILITTRDRSVALQMGS----IDIISVKELGE 175 (796)
Q Consensus 115 ~~~~LlvlDd~~~~~~~~~------------~~l~~~~~~~-~~gs~--iiiTsr~~~~~~~~~~----~~~~~l~~l~~ 175 (796)
..--.||+||+.. .-+| +.+...+... ..|-| |+-||-.+.+...|+- ...|.++.++.
T Consensus 597 S~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 597 SPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred CcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 6778999999943 2233 2333333332 23445 3446666777777753 45889999976
Q ss_pred -HhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhc
Q 003773 176 -EECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKC 209 (796)
Q Consensus 176 -~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~ 209 (796)
++..+.+++.- .-.+...+.++++...+|
T Consensus 675 ~~~~~~vl~~~n-----~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 675 GEQLLEVLEELN-----IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred hHHHHHHHHHcc-----CCCcchhHHHHHHHhccc
Confidence 77777776643 112233344555565555
No 226
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.86 E-value=0.0021 Score=66.16 Aligned_cols=102 Identities=17% Similarity=0.257 Sum_probs=55.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCce
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKK 117 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 117 (796)
..+.++|..|+|||.||.++++....+ . ..|+|+++. +++..+...-... ..+.... .+.+.+ -
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~-g-~~V~y~t~~------~l~~~l~~~~~~~---~~~~~~~----~~~l~~-~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDR-G-KSVIYRTAD------ELIEILREIRFNN---DKELEEV----YDLLIN-C 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHC-C-CeEEEEEHH------HHHHHHHHHHhcc---chhHHHH----HHHhcc-C
Confidence 679999999999999999999874322 2 346666543 3444333321110 1111111 122222 2
Q ss_pred EEEEEeCCCCCCccCh--hhHhhhccCC-CCCcEEEEEecc
Q 003773 118 FFLVLDDVWDGDFKKW--DPFFSCLKNG-HHESKILITTRD 155 (796)
Q Consensus 118 ~LlvlDd~~~~~~~~~--~~l~~~~~~~-~~gs~iiiTsr~ 155 (796)
=|||+||+.......| ..+...+... ..+-.+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4799999965443344 2344433321 234458888874
No 227
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.81 E-value=0.0037 Score=69.38 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=36.7
Q ss_pred ccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 11 ARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 11 ~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
|..-.+++|.+..++.+...... ....-|.|+|++|+|||++|+.+++.
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~-~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCG-PNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34445799999999976654432 23345679999999999999998764
No 228
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.00042 Score=66.80 Aligned_cols=84 Identities=24% Similarity=0.216 Sum_probs=48.7
Q ss_pred hcCcccceeeecccccCCCcccccc---cccccccCccccceEecCCCCccccchhh-hccCCccEeeccccccc-cccc
Q 003773 423 SKVACLRALVIRQWFVPLDDQNFIR---EIPENIGKLIHLKYLNLSELCIERLPETL-CELYNLQKLAVRWCTNL-RELP 497 (796)
Q Consensus 423 ~~~~~L~~L~l~~~~~~~~~~~~~~---~lp~~~~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L~~L~l~~~~~~-~~lp 497 (796)
..+..++.|||. +|.+. ++-.-+.+|++|+.|++++|.+..-..+. ..+.+|++|-|.+.... ...-
T Consensus 68 ~~~~~v~elDL~--------~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~ 139 (418)
T KOG2982|consen 68 SSVTDVKELDLT--------GNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQST 139 (418)
T ss_pred HHhhhhhhhhcc--------cchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhh
Confidence 567778888887 34332 23233557888888888888754221211 24567777777764321 2233
Q ss_pred hhhccccCCCeeecCCc
Q 003773 498 AGIGKLMNMRSLMNGQT 514 (796)
Q Consensus 498 ~~~~~l~~L~~L~l~~~ 514 (796)
..+..++.++.|+++.|
T Consensus 140 s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 140 SSLDDLPKVTELHMSDN 156 (418)
T ss_pred hhhhcchhhhhhhhccc
Confidence 34556666666666655
No 229
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.79 E-value=0.0051 Score=61.03 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=36.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccc----CCeEEEEEeCCcCCHHHHH
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRK----FDIVIWVCVSDAFEEIRIA 85 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~ 85 (796)
.-.++.|+|.+|+|||++|.+++........ -..++|++....++..++.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~ 71 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV 71 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH
Confidence 4479999999999999999888744212221 3579999988776655543
No 230
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.77 E-value=0.0063 Score=59.92 Aligned_cols=88 Identities=20% Similarity=0.198 Sum_probs=52.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccC------CeEEEEEeCCcCCHHHHHHHHHHHhccCC---------CCCc
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKF------DIVIWVCVSDAFEEIRIAKAILEVLDKSA---------SSLG 100 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------~~~~ 100 (796)
.-.++.|+|.+|+|||++|.+++... ...- ..++|++....++...+.+ +++..+... ....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLVQ-LAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHHH-HHHHhccchhhhhccEEEEeCC
Confidence 45799999999999999998876542 2222 5689998877666655433 333222110 0112
Q ss_pred cHHHHHHHHHHHh----CCceEEEEEeCCC
Q 003773 101 EFQSLMQQTQESI----RGKKFFLVLDDVW 126 (796)
Q Consensus 101 ~~~~~~~~~~~~l----~~~~~LlvlDd~~ 126 (796)
+.++....+.+.. ..+.-++|+|.+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 3344444444333 2345588888873
No 231
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.77 E-value=0.016 Score=67.56 Aligned_cols=152 Identities=18% Similarity=0.161 Sum_probs=78.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHH-HHhC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQ-ESIR 114 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~-~~l~ 114 (796)
..+-|.++|++|+|||++|+++++. ....| +.+..+ . ++... ..+.+..+..+. ..-.
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e--~~~~f---i~v~~~------~----l~~~~------vGese~~i~~~f~~A~~ 544 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATE--SGANF---IAVRGP------E----ILSKW------VGESEKAIREIFRKARQ 544 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEehH------H----Hhhcc------cCcHHHHHHHHHHHHHh
Confidence 3456889999999999999999987 32232 222211 1 11111 011111222222 2224
Q ss_pred CceEEEEEeCCCCCC------cc------ChhhHhhhccC--CCCCcEEEEEecchhhhhc-----cCccceEEccCCCh
Q 003773 115 GKKFFLVLDDVWDGD------FK------KWDPFFSCLKN--GHHESKILITTRDRSVALQ-----MGSIDIISVKELGE 175 (796)
Q Consensus 115 ~~~~LlvlDd~~~~~------~~------~~~~l~~~~~~--~~~gs~iiiTsr~~~~~~~-----~~~~~~~~l~~l~~ 175 (796)
..+.+|++|+++.-. .. ....+...+.. ...+.-||.||...+.... -.....+.+...+.
T Consensus 545 ~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~ 624 (733)
T TIGR01243 545 AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDE 624 (733)
T ss_pred cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCH
Confidence 567999999985310 00 01122222322 1233345556654432221 12346788888888
Q ss_pred HhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCc
Q 003773 176 EECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLP 213 (796)
Q Consensus 176 ~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 213 (796)
++-.++|+.+..+. ......+ ...+++.+.|.-
T Consensus 625 ~~R~~i~~~~~~~~-~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 625 EARKEIFKIHTRSM-PLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred HHHHHHHHHHhcCC-CCCccCC----HHHHHHHcCCCC
Confidence 88888987665221 1111122 355777777754
No 232
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.74 E-value=0.00096 Score=75.65 Aligned_cols=94 Identities=20% Similarity=0.226 Sum_probs=69.8
Q ss_pred chhhHHHhhhcCcccceeeecccccCCCcccccccccccccCccccceEecCCCCccccchhhhccCCccEeeccccccc
Q 003773 414 NGSILVELFSKVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNL 493 (796)
Q Consensus 414 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~ 493 (796)
...++......+|+|+.|.+.+..+. ..++-.-..++++|+.||+|+++++.+ ..+++|++||+|.+++-. +
T Consensus 136 s~~W~~kig~~LPsL~sL~i~~~~~~------~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe-~ 207 (699)
T KOG3665|consen 136 SNGWPKKIGTMLPSLRSLVISGRQFD------NDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLE-F 207 (699)
T ss_pred hccHHHHHhhhCcccceEEecCceec------chhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCC-C
Confidence 34567777788999999999963221 112334456789999999999999988 679999999999998633 3
Q ss_pred cccc--hhhccccCCCeeecCCcc
Q 003773 494 RELP--AGIGKLMNMRSLMNGQTE 515 (796)
Q Consensus 494 ~~lp--~~~~~l~~L~~L~l~~~~ 515 (796)
..-. ..+.+|++|+.||++...
T Consensus 208 e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 208 ESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred CchhhHHHHhcccCCCeeeccccc
Confidence 2211 357889999999998753
No 233
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.72 E-value=0.043 Score=52.95 Aligned_cols=187 Identities=12% Similarity=0.104 Sum_probs=110.1
Q ss_pred ccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccc----cccCCeEEEEEeCCc--------
Q 003773 11 ARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGV----KRKFDIVIWVCVSDA-------- 78 (796)
Q Consensus 11 ~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~----~~~f~~~~wv~~~~~-------- 78 (796)
|..-+.+.++++..+.+..... .++.+=..++|++|.||-|.+..+.++.-- +-+-+...|.+-+..
T Consensus 9 pksl~~l~~~~e~~~~Lksl~~-~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvs 87 (351)
T KOG2035|consen 9 PKSLDELIYHEELANLLKSLSS-TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVS 87 (351)
T ss_pred cchhhhcccHHHHHHHHHHhcc-cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEec
Confidence 4444557788887777765543 456677889999999999888766665210 112233444332221
Q ss_pred --C-----------CHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceE-EEEEeCCCCCCccChhhHhhhccCCC
Q 003773 79 --F-----------EEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKF-FLVLDDVWDGDFKKWDPFFSCLKNGH 144 (796)
Q Consensus 79 --~-----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-LlvlDd~~~~~~~~~~~l~~~~~~~~ 144 (796)
+ ..+-+.+++++.+.....- +.-..+.| ++|+-.+++-..+...++.+......
T Consensus 88 S~yHlEitPSDaG~~DRvViQellKevAQt~qi------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 88 SNYHLEITPSDAGNYDRVVIQELLKEVAQTQQI------------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYS 155 (351)
T ss_pred ccceEEeChhhcCcccHHHHHHHHHHHHhhcch------------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHh
Confidence 1 1133444444444322100 00122344 55566665545555566776666667
Q ss_pred CCcEEEEEecch-hhhhccC-ccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCch
Q 003773 145 HESKILITTRDR-SVALQMG-SIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPL 214 (796)
Q Consensus 145 ~gs~iiiTsr~~-~~~~~~~-~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 214 (796)
..+|+|+...+. .+...+. ..-.+.+...+++|....+++.+.+++-.-+ .+++.+|+++++|+-.
T Consensus 156 ~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp----~~~l~rIa~kS~~nLR 223 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP----KELLKRIAEKSNRNLR 223 (351)
T ss_pred cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc----HHHHHHHHHHhcccHH
Confidence 778888865542 1111111 2347889999999999999988765443322 6789999999999654
No 234
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.72 E-value=0.0033 Score=72.10 Aligned_cols=117 Identities=13% Similarity=0.163 Sum_probs=64.9
Q ss_pred CcccccHHHHHHHhcccC--------CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHH
Q 003773 15 LQIEGLDDDNTLALASSE--------QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAK 86 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~~~--------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 86 (796)
..++|.++.++.+..... .+.....+.++|++|+|||++|+.++... . ...+.++++.-....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~---~~~i~id~se~~~~~---- 528 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERH---- 528 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--C---CCcEEeechhhcccc----
Confidence 358999998884443321 12234578999999999999999998763 2 223444544322111
Q ss_pred HHHHHhccCCCCCccHHHHHHHHHHHhC-CceEEEEEeCCCCCCccChhhHhhhccC
Q 003773 87 AILEVLDKSASSLGEFQSLMQQTQESIR-GKKFFLVLDDVWDGDFKKWDPFFSCLKN 142 (796)
Q Consensus 87 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~-~~~~LlvlDd~~~~~~~~~~~l~~~~~~ 142 (796)
.+.+.++.... ....+. ...+.+.++ ....+++||+++....+.+..+...+..
T Consensus 529 ~~~~LiG~~~g-yvg~~~-~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~ 583 (758)
T PRK11034 529 TVSRLIGAPPG-YVGFDQ-GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDN 583 (758)
T ss_pred cHHHHcCCCCC-cccccc-cchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhc
Confidence 12222332211 111000 011222222 3456999999988776667777666543
No 235
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.70 E-value=0.032 Score=56.98 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...+.++|||++|+|||.+|+++++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999987
No 236
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.70 E-value=0.0076 Score=54.35 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=61.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCc---CCHHHHHHHHHHHh-----ccC-----CCCCc---c
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDA---FEEIRIAKAILEVL-----DKS-----ASSLG---E 101 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l-----~~~-----~~~~~---~ 101 (796)
..|-|++-.|.||||+|...+-+ ...+=..+.++.+-+. .....+++.+- .+ +.. ..... .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~r--a~~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALR--ALGHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHH
Confidence 47889988999999999776655 2222223444433332 23333333320 00 000 00001 1
Q ss_pred HHHHHHHHHHHhCCc-eEEEEEeCCCC---CCccChhhHhhhccCCCCCcEEEEEecch
Q 003773 102 FQSLMQQTQESIRGK-KFFLVLDDVWD---GDFKKWDPFFSCLKNGHHESKILITTRDR 156 (796)
Q Consensus 102 ~~~~~~~~~~~l~~~-~~LlvlDd~~~---~~~~~~~~l~~~~~~~~~gs~iiiTsr~~ 156 (796)
..+..+..++.+... -=|+|||++-. ...-..+.+...+.....+..+|+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 122233344444444 45999999832 12234456666666666677899999984
No 237
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.68 E-value=0.0075 Score=55.83 Aligned_cols=39 Identities=36% Similarity=0.405 Sum_probs=29.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAF 79 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 79 (796)
++.|+|.+|+|||+++..++... ...-..++|++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcch
Confidence 36799999999999999988763 2333557788776543
No 238
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.015 Score=63.42 Aligned_cols=161 Identities=17% Similarity=0.217 Sum_probs=88.6
Q ss_pred ccCcccccHHHHHHHhcc-----cCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHH
Q 003773 13 LKLQIEGLDDDNTLALAS-----SEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKA 87 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~-----~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 87 (796)
...+-+|.+.-.+++++- +.+.-+-+++..+|++|+|||.+|+.++.- ..+.|- -++++.-.+..++
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~A--LnRkFf---RfSvGG~tDvAeI--- 480 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARA--LNRKFF---RFSVGGMTDVAEI--- 480 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHH--hCCceE---EEeccccccHHhh---
Confidence 456788998888855543 344445689999999999999999999886 444442 2234443333332
Q ss_pred HHHHhccCCCCCccH-HHHHHHHHHHhCCceEEEEEeCCCCCCc----cChhhHhhhcc------------CC-CCCcEE
Q 003773 88 ILEVLDKSASSLGEF-QSLMQQTQESIRGKKFFLVLDDVWDGDF----KKWDPFFSCLK------------NG-HHESKI 149 (796)
Q Consensus 88 i~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~LlvlDd~~~~~~----~~~~~l~~~~~------------~~-~~gs~i 149 (796)
-|....-.... ...++.++.. +...-|+.+|.|+.... +.-.++...+. +- --=|||
T Consensus 481 ----kGHRRTYVGAMPGkiIq~LK~v-~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 481 ----KGHRRTYVGAMPGKIIQCLKKV-KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred ----cccceeeeccCChHHHHHHHhh-CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhhe
Confidence 12221111111 2333333332 45567888999865211 11122222221 11 123677
Q ss_pred EEEecchhhhh----ccCccceEEccCCChHhHHHHHHHHh
Q 003773 150 LITTRDRSVAL----QMGSIDIISVKELGEEECWSLFKQVA 186 (796)
Q Consensus 150 iiTsr~~~~~~----~~~~~~~~~l~~l~~~e~~~lf~~~~ 186 (796)
++...-..+.. ..+..+.|++.+...+|-.++-.++.
T Consensus 556 LFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 65443222111 12334689999999888777666554
No 239
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.66 E-value=0.0013 Score=57.49 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
+|+|.|++|+||||+|+.+++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 240
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.66 E-value=0.0036 Score=62.12 Aligned_cols=82 Identities=22% Similarity=0.275 Sum_probs=49.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRG 115 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 115 (796)
...-+.++|.+|+|||.||.++.++.. +..+. +.++++ .++..++....... . ....+.+.+ .
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~s-v~f~~~------~el~~~Lk~~~~~~-----~---~~~~l~~~l-~ 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGIS-VLFITA------PDLLSKLKAAFDEG-----R---LEEKLLREL-K 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCe-EEEEEH------HHHHHHHHHHHhcC-----c---hHHHHHHHh-h
Confidence 445788999999999999999999854 33333 555543 35555555554330 1 111122211 2
Q ss_pred ceEEEEEeCCCCCCccChh
Q 003773 116 KKFFLVLDDVWDGDFKKWD 134 (796)
Q Consensus 116 ~~~LlvlDd~~~~~~~~~~ 134 (796)
+-=|+||||+-......|.
T Consensus 167 ~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 167 KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred cCCEEEEecccCccCCHHH
Confidence 3348899999664444443
No 241
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.66 E-value=0.0097 Score=69.43 Aligned_cols=176 Identities=16% Similarity=0.084 Sum_probs=88.1
Q ss_pred CcccccHHHHHHHhcccC------------CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHH
Q 003773 15 LQIEGLDDDNTLALASSE------------QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEI 82 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~~~------------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 82 (796)
+++.|.++.++.+.+... +-...+.|.++|++|+|||++|+++++. ....| +.+....
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~---i~i~~~~----- 247 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF---ISINGPE----- 247 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE---EEEecHH-----
Confidence 348899999884432210 0123467889999999999999999886 22222 2232211
Q ss_pred HHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCc------c-----ChhhHhhhccCC-CCCcEEE
Q 003773 83 RIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDF------K-----KWDPFFSCLKNG-HHESKIL 150 (796)
Q Consensus 83 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~------~-----~~~~l~~~~~~~-~~gs~ii 150 (796)
+. .... ....+.....+.......+.+|++|+++.... . ....+...+... ..+..+|
T Consensus 248 -i~----~~~~-----g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv 317 (733)
T TIGR01243 248 -IM----SKYY-----GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV 317 (733)
T ss_pred -Hh----cccc-----cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE
Confidence 10 0000 00111122222233345678999999854110 0 112233333221 2233344
Q ss_pred E-Eecchh-hhhcc----CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchh
Q 003773 151 I-TTRDRS-VALQM----GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLA 215 (796)
Q Consensus 151 i-Tsr~~~-~~~~~----~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 215 (796)
| ||.... +...+ .....+.+...+.++-.++++...-.. .... ......+++.+.|..-+
T Consensus 318 I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~-~l~~----d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 318 IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNM-PLAE----DVDLDKLAEVTHGFVGA 383 (733)
T ss_pred EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCC-CCcc----ccCHHHHHHhCCCCCHH
Confidence 4 444322 11111 123467788888888888887554211 1111 11246678888886533
No 242
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.66 E-value=0.0064 Score=59.42 Aligned_cols=43 Identities=16% Similarity=0.148 Sum_probs=31.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFE 80 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 80 (796)
.-+++.|.|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 4578999999999999999888765 223334578887655443
No 243
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.65 E-value=0.012 Score=55.44 Aligned_cols=117 Identities=16% Similarity=0.085 Sum_probs=60.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhcc--C-------------CCCCccH
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDK--S-------------ASSLGEF 102 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~--~-------------~~~~~~~ 102 (796)
.+++|.|+.|.|||||++.++.... .-.+.+++.-. ........+.+.++- + .......
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 5899999999999999999987522 22333333211 111111111111110 0 0111112
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCCC-CccChhhHhhhccCCCCCcEEEEEecchhhhh
Q 003773 103 QSLMQQTQESIRGKKFFLVLDDVWDG-DFKKWDPFFSCLKNGHHESKILITTRDRSVAL 160 (796)
Q Consensus 103 ~~~~~~~~~~l~~~~~LlvlDd~~~~-~~~~~~~l~~~~~~~~~gs~iiiTsr~~~~~~ 160 (796)
+...-.+.+.+-.++-++++|+-... +......+...+.....+..||++|.+.+...
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 22333455666778888999987542 22222333333332223567888888866554
No 244
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.024 Score=61.83 Aligned_cols=161 Identities=17% Similarity=0.067 Sum_probs=86.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcC--CHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAF--EEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIR 114 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 114 (796)
..-|.|.|+.|+|||+||+++++... +...-.+.+++++.-. ..+.+++.+... +.+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~v-----------------fse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNV-----------------FSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHH-----------------HHHHHh
Confidence 35788999999999999999999854 4444557777777532 234444433332 333456
Q ss_pred CceEEEEEeCCCC------CCccChhh----Hhhhc----cC-CCCCc--EEEEEecchhhhhc-----cCccceEEccC
Q 003773 115 GKKFFLVLDDVWD------GDFKKWDP----FFSCL----KN-GHHES--KILITTRDRSVALQ-----MGSIDIISVKE 172 (796)
Q Consensus 115 ~~~~LlvlDd~~~------~~~~~~~~----l~~~~----~~-~~~gs--~iiiTsr~~~~~~~-----~~~~~~~~l~~ 172 (796)
-.+-+|||||++- .+-.+|.. +...+ .. ...+. ++|.|....+-... .-....+.+..
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 6889999999943 11122211 11111 11 12233 34445544221111 11123667788
Q ss_pred CChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCC-chhHHHH
Q 003773 173 LGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGL-PLAAKVI 219 (796)
Q Consensus 173 l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~ 219 (796)
+...+-.++++...-.... . ...+...-+..+|+|. +.-++++
T Consensus 573 p~~~~R~~IL~~~~s~~~~-~---~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 573 PAVTRRKEILTTIFSKNLS-D---ITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred cchhHHHHHHHHHHHhhhh-h---hhhHHHHHHHHhcCCccchhHHHH
Confidence 8777777776655421111 1 1122223377888874 4444444
No 245
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.65 E-value=0.0093 Score=69.09 Aligned_cols=161 Identities=17% Similarity=0.198 Sum_probs=84.3
Q ss_pred cCcccccHHHHHHHhcccC-----CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHH
Q 003773 14 KLQIEGLDDDNTLALASSE-----QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAI 88 (796)
Q Consensus 14 ~~~~vGr~~~~~~l~~~~~-----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 88 (796)
..+.+|.++-.+.+++.+. ......++.++|++|+||||+|+.++.. ....|- -+.++...+...+...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~~---~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKYV---RMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCEE---EEEcCCCCCHHHhccch
Confidence 4468999998886654432 1223458999999999999999999875 333332 23333332322221110
Q ss_pred HHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccC----hhhHhhhccCC--------------C-CCcEE
Q 003773 89 LEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKK----WDPFFSCLKNG--------------H-HESKI 149 (796)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~----~~~l~~~~~~~--------------~-~gs~i 149 (796)
....+. ......+.+.+. ....-+++||.++....+. .+.+...+... . ...-+
T Consensus 396 ~~~~g~------~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 RTYIGS------MPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred hccCCC------CCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 001111 011222333322 2234478899996643221 24444443321 1 22333
Q ss_pred EEEecchhhhhc-cCccceEEccCCChHhHHHHHHHHh
Q 003773 150 LITTRDRSVALQ-MGSIDIISVKELGEEECWSLFKQVA 186 (796)
Q Consensus 150 iiTsr~~~~~~~-~~~~~~~~l~~l~~~e~~~lf~~~~ 186 (796)
|.|+....+... .+....+++.+++.+|-.++.+++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 444443322111 1224578899999999888877665
No 246
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.62 E-value=0.0039 Score=58.58 Aligned_cols=37 Identities=35% Similarity=0.530 Sum_probs=28.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEE
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVC 74 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~ 74 (796)
...+|.+.|+.|+||||+|+.++.. ....+..+++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEe
Confidence 4468999999999999999999987 444555566653
No 247
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.60 E-value=0.013 Score=55.16 Aligned_cols=120 Identities=18% Similarity=0.170 Sum_probs=64.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCC--cCCHHHHH------HHHHHHhccCC------CCCccH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSD--AFEEIRIA------KAILEVLDKSA------SSLGEF 102 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~------~~i~~~l~~~~------~~~~~~ 102 (796)
-.+++|.|..|.|||||++.++... ....+.+++.-.. ..+..... .++++.++... ......
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 3589999999999999999998752 2334444442111 11221111 12344443221 112222
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCC-CCccChhhHhhhccCC-CC-CcEEEEEecchhhh
Q 003773 103 QSLMQQTQESIRGKKFFLVLDDVWD-GDFKKWDPFFSCLKNG-HH-ESKILITTRDRSVA 159 (796)
Q Consensus 103 ~~~~~~~~~~l~~~~~LlvlDd~~~-~~~~~~~~l~~~~~~~-~~-gs~iiiTsr~~~~~ 159 (796)
+...-.+.+.+-..+-++++|+-.. -+....+.+...+... .. +..||++|.+.+..
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 3333345566777888999998743 2222333344443322 12 56788888876543
No 248
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.59 E-value=0.0034 Score=57.93 Aligned_cols=130 Identities=18% Similarity=0.169 Sum_probs=63.4
Q ss_pred ccccHHHHHHHhcccCC-CCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccC
Q 003773 17 IEGLDDDNTLALASSEQ-QKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKS 95 (796)
Q Consensus 17 ~vGr~~~~~~l~~~~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 95 (796)
+||.+..++.+.+.... .....-|.|+|..|+||+.+|+.+.+.. ...-...+-|+++.- +.+.+...++-.-...
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s--~r~~~pfi~vnc~~~-~~~~~e~~LFG~~~~~ 77 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS--PRKNGPFISVNCAAL-PEELLESELFGHEKGA 77 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS--TTTTS-EEEEETTTS--HHHHHHHHHEBCSSS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh--hcccCCeEEEehhhh-hcchhhhhhhcccccc
Confidence 46777777754443210 1122456699999999999999998862 222233455566543 3333333333221111
Q ss_pred CC-CCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCC------C-----CCcEEEEEecc
Q 003773 96 AS-SLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNG------H-----HESKILITTRD 155 (796)
Q Consensus 96 ~~-~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~------~-----~gs~iiiTsr~ 155 (796)
.. .......... ....=-|+||+++.........+...+... . ...|||.||..
T Consensus 78 ~~~~~~~~~G~l~------~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 78 FTGARSDKKGLLE------QANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp STTTSSEBEHHHH------HTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred ccccccccCCcee------eccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 11 1111111111 124446789999765544444454444321 1 24688888874
No 249
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.58 E-value=0.00069 Score=57.64 Aligned_cols=76 Identities=20% Similarity=0.224 Sum_probs=65.3
Q ss_pred hhhHHHhhhcCcccceeeecccccCCCcccccccccccccCccccceEecCCCCccccchhhhccCCccEeecccccccc
Q 003773 415 GSILVELFSKVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLR 494 (796)
Q Consensus 415 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~ 494 (796)
...++.+-.+++.+..|+|+ +|.+.++|.++..++.|+.|+++.|.+...|..|..|.+|-.|+..++. ..
T Consensus 66 k~fp~kft~kf~t~t~lNl~--------~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na-~~ 136 (177)
T KOG4579|consen 66 KKFPKKFTIKFPTATTLNLA--------NNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA-RA 136 (177)
T ss_pred hhCCHHHhhccchhhhhhcc--------hhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc-cc
Confidence 44556656778889999999 8999999999999999999999999999999999999999999998866 55
Q ss_pred ccchh
Q 003773 495 ELPAG 499 (796)
Q Consensus 495 ~lp~~ 499 (796)
.+|-.
T Consensus 137 eid~d 141 (177)
T KOG4579|consen 137 EIDVD 141 (177)
T ss_pred cCcHH
Confidence 66654
No 250
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.57 E-value=0.012 Score=68.85 Aligned_cols=159 Identities=17% Similarity=0.202 Sum_probs=79.9
Q ss_pred CcccccHHHHHHHhccc-----CCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHH
Q 003773 15 LQIEGLDDDNTLALASS-----EQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAIL 89 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~~-----~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 89 (796)
.+++|.+..++.+.+.. ......+++.++|++|+|||++|+.+++. ....|- -+.++...+...+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~~---~i~~~~~~~~~~i~---- 390 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKFV---RFSLGGVRDEAEIR---- 390 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCeE---EEeCCCcccHHHHc----
Confidence 45889888888655421 11223357999999999999999999987 333332 22233222222211
Q ss_pred HHhccCCCCC-ccHHHHHHHHHHHhCCceEEEEEeCCCCCCccC----hhhHhhhccC--------C-------CCCcEE
Q 003773 90 EVLDKSASSL-GEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKK----WDPFFSCLKN--------G-------HHESKI 149 (796)
Q Consensus 90 ~~l~~~~~~~-~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~----~~~l~~~~~~--------~-------~~gs~i 149 (796)
+....-. .......+.+.+. ...+-+|+||+++...... ...+...+.. . ....-+
T Consensus 391 ---g~~~~~~g~~~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~ 466 (775)
T TIGR00763 391 ---GHRRTYVGAMPGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIF 466 (775)
T ss_pred ---CCCCceeCCCCchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEE
Confidence 1110000 1112222333333 2333478999996643211 1223332211 0 012233
Q ss_pred EEEecchh-hhhc-cCccceEEccCCChHhHHHHHHHHh
Q 003773 150 LITTRDRS-VALQ-MGSIDIISVKELGEEECWSLFKQVA 186 (796)
Q Consensus 150 iiTsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~lf~~~~ 186 (796)
|.||.... +... ......+++.+++.++-.++++++.
T Consensus 467 I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 467 IATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 44444321 1111 1223578999999888888776654
No 251
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.57 E-value=0.019 Score=53.13 Aligned_cols=118 Identities=13% Similarity=0.053 Sum_probs=61.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccc-c--cC---CeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVK-R--KF---DIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQ 110 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~--~f---~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 110 (796)
-.+++|.|+.|.|||||++.++...... + .+ ..+.++.-........+.+.+.-. ........+...-.+.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~la 103 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAFA 103 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHHH
Confidence 3589999999999999999998763211 1 01 112332211111111233332210 1222233333444455
Q ss_pred HHhCCceEEEEEeCCCCC-CccChhhHhhhccCCCCCcEEEEEecchhhh
Q 003773 111 ESIRGKKFFLVLDDVWDG-DFKKWDPFFSCLKNGHHESKILITTRDRSVA 159 (796)
Q Consensus 111 ~~l~~~~~LlvlDd~~~~-~~~~~~~l~~~~~~~~~gs~iiiTsr~~~~~ 159 (796)
+.+-.++-++++|+-... +......+...+... +..||++|.+....
T Consensus 104 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 104 RLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 666677788899986431 222233333333332 35588888876554
No 252
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.56 E-value=0.0059 Score=60.37 Aligned_cols=116 Identities=18% Similarity=0.185 Sum_probs=64.0
Q ss_pred hccccccCcccccHHHHH------HHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccC-CeEEEEEeCCcC-
Q 003773 8 WTTARLKLQIEGLDDDNT------LALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKF-DIVIWVCVSDAF- 79 (796)
Q Consensus 8 ~~~~~~~~~~vGr~~~~~------~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~- 79 (796)
|+....++.+.-|+..-+ +.++.+..-..-+.++|.|.+|+|||+|++.+++. ...+| +.++++.+++..
T Consensus 34 ~~i~~~~p~~~~R~~~~e~L~TGIr~ID~l~pig~GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~ 111 (274)
T cd01133 34 WPIHREAPEFVEQSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTR 111 (274)
T ss_pred ccccCCCCCchhhcCcCcccccCceeeeccCCcccCCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcH
Confidence 344444445555555544 23333221123368899999999999999999987 44445 446666666543
Q ss_pred CHHHHHHHHHHHhccC------CCCCc-cH-----HHHHHHHHHHh---CCceEEEEEeCC
Q 003773 80 EEIRIAKAILEVLDKS------ASSLG-EF-----QSLMQQTQESI---RGKKFFLVLDDV 125 (796)
Q Consensus 80 ~~~~~~~~i~~~l~~~------~~~~~-~~-----~~~~~~~~~~l---~~~~~LlvlDd~ 125 (796)
+..++.+.+.+.-... ..... .. ....-.+.+++ .++.+|+++||+
T Consensus 112 Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 112 EGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 3344444444321100 01111 11 11222344555 389999999998
No 253
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.56 E-value=0.012 Score=53.36 Aligned_cols=125 Identities=21% Similarity=0.179 Sum_probs=70.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEE---eC------------------Cc----------------
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVC---VS------------------DA---------------- 78 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~---~~------------------~~---------------- 78 (796)
.-..+.++|++|.||||+.+.+|...+.. .+.+|+. ++ ++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 33689999999999999999999864321 1222321 00 00
Q ss_pred -----CCHHHHHHHHHHHh---ccC------CCCCccHHHHHHHHHHHhCCceEEEEEeCCCC-CCccChhhHhhhccC-
Q 003773 79 -----FEEIRIAKAILEVL---DKS------ASSLGEFQSLMQQTQESIRGKKFFLVLDDVWD-GDFKKWDPFFSCLKN- 142 (796)
Q Consensus 79 -----~~~~~~~~~i~~~l---~~~------~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~-~~~~~~~~l~~~~~~- 142 (796)
....++.+.+.+.+ +.. +.+....++-.-.|.+.+-+++-+++=|.-.- -+.+.-..+...|..
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei 183 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH
Confidence 01123333333322 211 12223334444557777788888888885421 122222233344433
Q ss_pred CCCCcEEEEEecchhhhhccC
Q 003773 143 GHHESKILITTRDRSVALQMG 163 (796)
Q Consensus 143 ~~~gs~iiiTsr~~~~~~~~~ 163 (796)
+..|+.||++|-+.++...+.
T Consensus 184 nr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 184 NRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hhcCcEEEEEeccHHHHHhcc
Confidence 457899999999988766653
No 254
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.51 E-value=0.015 Score=54.23 Aligned_cols=118 Identities=14% Similarity=0.099 Sum_probs=60.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCc--CCHHHHHHHHHHHhcc--CCCC----------CccH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDA--FEEIRIAKAILEVLDK--SASS----------LGEF 102 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~--~~~~----------~~~~ 102 (796)
-.+++|.|+.|.|||||++.++.-. ....+.+++..... ..... ..+.++- .... ....
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~----~~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLES----LRKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHH----HHhhEEEEcCCchhccchHHHHhhCHH
Confidence 3589999999999999999998752 22334444321110 01111 1111110 0000 1111
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCCC-CccChhhHhhhccCCCCCcEEEEEecchhhhhc
Q 003773 103 QSLMQQTQESIRGKKFFLVLDDVWDG-DFKKWDPFFSCLKNGHHESKILITTRDRSVALQ 161 (796)
Q Consensus 103 ~~~~~~~~~~l~~~~~LlvlDd~~~~-~~~~~~~l~~~~~~~~~gs~iiiTsr~~~~~~~ 161 (796)
+...-.+.+.+-.++-++++|+-... +......+...+.....+..||++|.+.+....
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 22222355566677889999987442 222233333333332234668888888665543
No 255
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.50 E-value=0.0091 Score=59.45 Aligned_cols=55 Identities=24% Similarity=0.251 Sum_probs=38.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccc----ccCCeEEEEEeCCcCCHHHHHHHHHHHh
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVK----RKFDIVIWVCVSDAFEEIRIAKAILEVL 92 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l 92 (796)
-.+.=|+|++|+|||+||..++-..... +.=..++|++....++.+++.+ |++..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~-i~~~~ 96 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ-IAERF 96 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH-HHHHT
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH-Hhhcc
Confidence 3589999999999999997665331111 1224699999999898887754 55544
No 256
>PTZ00494 tuzin-like protein; Provisional
Probab=96.50 E-value=0.083 Score=54.83 Aligned_cols=167 Identities=15% Similarity=0.198 Sum_probs=98.2
Q ss_pred cccccCcccccHHHHHHHhcccC--CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHH
Q 003773 10 TARLKLQIEGLDDDNTLALASSE--QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKA 87 (796)
Q Consensus 10 ~~~~~~~~vGr~~~~~~l~~~~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 87 (796)
.+..+..+|.|++|-.++-+-+. +....+++++.|..|.||++|.+.+...+. -..++|++... ++.++.
T Consensus 366 a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~---EDtLrs 437 (664)
T PTZ00494 366 AAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGT---EDTLRS 437 (664)
T ss_pred cccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCC---cchHHH
Confidence 34567789999999884443332 234679999999999999999988776522 23567777653 455677
Q ss_pred HHHHhccCCCCC-ccH----HHHHHHHHHHhCCceEEEEEeCCCCCC-ccChhhHhhhccCCCCCcEEEEEecchhhhhc
Q 003773 88 ILEVLDKSASSL-GEF----QSLMQQTQESIRGKKFFLVLDDVWDGD-FKKWDPFFSCLKNGHHESKILITTRDRSVALQ 161 (796)
Q Consensus 88 i~~~l~~~~~~~-~~~----~~~~~~~~~~l~~~~~LlvlDd~~~~~-~~~~~~l~~~~~~~~~gs~iiiTsr~~~~~~~ 161 (796)
+.+.++....+. .|. .+....-+....++.-+||+-==.-.+ ..-+.+.. .+.....-|+|++---.+.+...
T Consensus 438 VVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT~~ 516 (664)
T PTZ00494 438 VVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALTPL 516 (664)
T ss_pred HHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhhchh
Confidence 778887654332 222 222222333345666666653211111 11112211 12233455778875554433211
Q ss_pred ---cCccceEEccCCChHhHHHHHHHH
Q 003773 162 ---MGSIDIISVKELGEEECWSLFKQV 185 (796)
Q Consensus 162 ---~~~~~~~~l~~l~~~e~~~lf~~~ 185 (796)
...-+.|.+.+|+.++|.++-...
T Consensus 517 n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 517 NVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred hccCccceeEecCCcCHHHHHHHHhcc
Confidence 223468999999999999887654
No 257
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.022 Score=62.46 Aligned_cols=161 Identities=19% Similarity=0.265 Sum_probs=89.6
Q ss_pred ccCcccccHHHHHHHhccc-----CCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHH
Q 003773 13 LKLQIEGLDDDNTLALASS-----EQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKA 87 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~~-----~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 87 (796)
...+-+|-++-.+++++.+ ...-+-+++.++|++|+|||.|++.+++- ..+.|- -++++.-.+..++
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~a--l~Rkfv---R~sLGGvrDEAEI--- 392 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKA--LGRKFV---RISLGGVRDEAEI--- 392 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHH--hCCCEE---EEecCccccHHHh---
Confidence 3556889998888655442 22334479999999999999999999986 555552 2234433232222
Q ss_pred HHHHhccCCCCCccH-HHHHHHHHHHhCCceEEEEEeCCCCCCcc----ChhhHhhhccCC-C------------CCcEE
Q 003773 88 ILEVLDKSASSLGEF-QSLMQQTQESIRGKKFFLVLDDVWDGDFK----KWDPFFSCLKNG-H------------HESKI 149 (796)
Q Consensus 88 i~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~LlvlDd~~~~~~~----~~~~l~~~~~~~-~------------~gs~i 149 (796)
-|....-.... ..+++.++ ..+.+.=+++||.++....+ .-.++...+... + -=|+|
T Consensus 393 ----RGHRRTYIGamPGrIiQ~mk-ka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 393 ----RGHRRTYIGAMPGKIIQGMK-KAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred ----ccccccccccCChHHHHHHH-HhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 12222212221 22333333 23567789999999653211 112233322210 0 11444
Q ss_pred E-EEecch-h-hh-hccCccceEEccCCChHhHHHHHHHHh
Q 003773 150 L-ITTRDR-S-VA-LQMGSIDIISVKELGEEECWSLFKQVA 186 (796)
Q Consensus 150 i-iTsr~~-~-~~-~~~~~~~~~~l~~l~~~e~~~lf~~~~ 186 (796)
+ |||-+. + +. ..++..+++++.+.+.+|-.+.-+++.
T Consensus 468 mFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 4 444431 1 21 123445789999999999888776665
No 258
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.49 E-value=0.0021 Score=65.83 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=37.1
Q ss_pred cccccHHHHHHHhcccC-----CCCCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 003773 16 QIEGLDDDNTLALASSE-----QQKGLRIISLFGLGGIGKTTLAQLAFNNE 61 (796)
Q Consensus 16 ~~vGr~~~~~~l~~~~~-----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 61 (796)
+++|.++.++.+++... .....++++++|++|+||||+|+.+++..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999996665531 12345889999999999999999998873
No 259
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.45 E-value=0.0047 Score=62.87 Aligned_cols=85 Identities=24% Similarity=0.282 Sum_probs=53.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCC-----CCCccHHHHHHHH
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSA-----SSLGEFQSLMQQT 109 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~~ 109 (796)
+.-+++-|+|++|+||||||.+++.. ....-..++|++....++.. .++.++... ....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 34578999999999999999887755 33334568899877665543 233343211 1122344455555
Q ss_pred HHHhC-CceEEEEEeCCC
Q 003773 110 QESIR-GKKFFLVLDDVW 126 (796)
Q Consensus 110 ~~~l~-~~~~LlvlDd~~ 126 (796)
....+ +.--++|+|.+-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 55443 456689999873
No 260
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.44 E-value=0.0031 Score=57.66 Aligned_cols=108 Identities=19% Similarity=0.212 Sum_probs=68.0
Q ss_pred ccCCcEEEEcCCCCCCCCCccccc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeecccccccc
Q 003773 645 LTNLRELKLFSCVNCEHLPPLGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELE 723 (796)
Q Consensus 645 l~~L~~L~L~~~~~~~~lp~l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 723 (796)
+.....+||++|. +..++.|..+ .|.+|.+.++... .+.... ...+|+|+.|.+.++ ++.
T Consensus 41 ~d~~d~iDLtdNd-l~~l~~lp~l~rL~tLll~nNrIt-~I~p~L----------------~~~~p~l~~L~LtnN-si~ 101 (233)
T KOG1644|consen 41 LDQFDAIDLTDND-LRKLDNLPHLPRLHTLLLNNNRIT-RIDPDL----------------DTFLPNLKTLILTNN-SIQ 101 (233)
T ss_pred ccccceecccccc-hhhcccCCCccccceEEecCCcce-eeccch----------------hhhccccceEEecCc-chh
Confidence 4566778888883 4445555555 6888888776533 333221 126788888888776 444
Q ss_pred ccccccccccccCCCCccceeeccCCCCCCCC---CcCCCCCCCccEEEEcCCCc
Q 003773 724 EWNYRVTRKENISIMPRLSSLEIDCCSKLNVL---PDHLLQTTTLQELSIRGCPI 775 (796)
Q Consensus 724 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l---p~~~~~l~~L~~L~l~~~~~ 775 (796)
...- -..+..||.|++|.+-+|+.-..- -..+..+++|++||..+-..
T Consensus 102 ~l~d----l~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 102 ELGD----LDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred hhhh----cchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 3322 233557899999999988643211 12455788999999877553
No 261
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.43 E-value=0.0047 Score=62.84 Aligned_cols=85 Identities=22% Similarity=0.272 Sum_probs=53.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCC-----CCCccHHHHHHHH
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSA-----SSLGEFQSLMQQT 109 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~~ 109 (796)
+.-+++-|+|++|+||||||.+++.. ....-..++|++.....+.. .++.++... ......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 34579999999999999999887665 33333558899877655542 344443221 1122344555555
Q ss_pred HHHhC-CceEEEEEeCCC
Q 003773 110 QESIR-GKKFFLVLDDVW 126 (796)
Q Consensus 110 ~~~l~-~~~~LlvlDd~~ 126 (796)
....+ +..-+||+|.+-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55443 456689999983
No 262
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.42 E-value=0.00061 Score=73.73 Aligned_cols=106 Identities=21% Similarity=0.194 Sum_probs=67.1
Q ss_pred CCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCcccccccccccccCccccceEecCCCCccccch
Q 003773 395 FNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPE 474 (796)
Q Consensus 395 ~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~ 474 (796)
+.-+..|..++++ .+.... ...+..++.|+.|||+ .|.+..+|.--..-.+|+.|++++|.++++-
T Consensus 183 Lqll~ale~LnLs---hNk~~~--v~~Lr~l~~LkhLDls--------yN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~- 248 (1096)
T KOG1859|consen 183 LQLLPALESLNLS---HNKFTK--VDNLRRLPKLKHLDLS--------YNCLRHVPQLSMVGCKLQLLNLRNNALTTLR- 248 (1096)
T ss_pred HHHHHHhhhhccc---hhhhhh--hHHHHhcccccccccc--------cchhccccccchhhhhheeeeecccHHHhhh-
Confidence 4444555556665 222222 2246677888888888 6666666642222234888888888887774
Q ss_pred hhhccCCccEeecccccccc--ccchhhccccCCCeeecCCcc
Q 003773 475 TLCELYNLQKLAVRWCTNLR--ELPAGIGKLMNMRSLMNGQTE 515 (796)
Q Consensus 475 ~i~~l~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~ 515 (796)
.+.+|.+|+.||+++|-... ++ .-++.|..|+.|+|.||.
T Consensus 249 gie~LksL~~LDlsyNll~~hseL-~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 249 GIENLKSLYGLDLSYNLLSEHSEL-EPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hHHhhhhhhccchhHhhhhcchhh-hHHHHHHHHHHHhhcCCc
Confidence 57888888888888865322 12 226777888888888874
No 263
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.42 E-value=0.0012 Score=59.02 Aligned_cols=106 Identities=15% Similarity=0.148 Sum_probs=57.3
Q ss_pred cccHHHHHHHhcccCC-CCCcEEEEEEcCCCCcHHHHHHHHHcCccc-cccCCeEEEEEeCCcCCHHHHHHHHHHHhccC
Q 003773 18 EGLDDDNTLALASSEQ-QKGLRIISLFGLGGIGKTTLAQLAFNNEGV-KRKFDIVIWVCVSDAFEEIRIAKAILEVLDKS 95 (796)
Q Consensus 18 vGr~~~~~~l~~~~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 95 (796)
||+-..++++.+.+.. ......|.|+|..|+||+++|+.++..... ...|..+ ++... . .++
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~~-~-----~~~------- 64 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCASL-P-----AEL------- 64 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHCT-C-----HHH-------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhhC-c-----HHH-------
Confidence 4555566644333210 123356789999999999999988876322 1222211 11111 0 111
Q ss_pred CCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCC-CCCcEEEEEecc
Q 003773 96 ASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNG-HHESKILITTRD 155 (796)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~-~~gs~iiiTsr~ 155 (796)
+.+ .+.--++++|++.-+.+....+...+... ....|+|.||+.
T Consensus 65 -------------l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 65 -------------LEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp -------------HHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred -------------HHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 111 14445779999776555556666666532 567799999885
No 264
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.41 E-value=0.0023 Score=59.20 Aligned_cols=90 Identities=17% Similarity=0.142 Sum_probs=52.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccc-ccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVK-RKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRG 115 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 115 (796)
..++.+.|+.|+|||.+|+++++. .. +.....+-++++.-....+....+.+.++.. .......
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~--l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~-~~~v~~~------------ 67 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAEL--LFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSP-PGYVGAE------------ 67 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHH--HT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHT-TCHHHHH------------
T ss_pred EEEEEEECCCCCCHHHHHHHHHHH--hccCCccchHHHhhhcccccchHHhhhhhhhhcc-cceeecc------------
Confidence 467889999999999999999886 33 4455666677665433111111111111111 1110000
Q ss_pred ceEEEEEeCCCCCCc-----------cChhhHhhhcc
Q 003773 116 KKFFLVLDDVWDGDF-----------KKWDPFFSCLK 141 (796)
Q Consensus 116 ~~~LlvlDd~~~~~~-----------~~~~~l~~~~~ 141 (796)
..-+|+||+++.... .-+..+...+.
T Consensus 68 ~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le 104 (171)
T PF07724_consen 68 EGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLE 104 (171)
T ss_dssp HHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHhhccccccccchhhHHHHHHHHHHHhc
Confidence 011999999988766 56666666654
No 265
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.38 E-value=0.013 Score=54.59 Aligned_cols=113 Identities=13% Similarity=0.191 Sum_probs=59.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCc---ccccc---C--CeEEEEEeCCcCCHHHHHHHHHHHhccCCC----C---CccH
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNE---GVKRK---F--DIVIWVCVSDAFEEIRIAKAILEVLDKSAS----S---LGEF 102 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~---~~~~~---f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~---~~~~ 102 (796)
.+++|.|+.|+|||||.+.+..+. ..... | ..+.|+. + .+.++.++.... . ....
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~--q--------~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID--Q--------LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh--H--------HHHHHHcCCCccccCCCcCcCCHH
Confidence 589999999999999999886321 11111 1 0133321 1 344555553211 1 1112
Q ss_pred HHHHHHHHHHhCCc--eEEEEEeCCCCC-CccChhhHhhhccCC-CCCcEEEEEecchhhhh
Q 003773 103 QSLMQQTQESIRGK--KFFLVLDDVWDG-DFKKWDPFFSCLKNG-HHESKILITTRDRSVAL 160 (796)
Q Consensus 103 ~~~~~~~~~~l~~~--~~LlvlDd~~~~-~~~~~~~l~~~~~~~-~~gs~iiiTsr~~~~~~ 160 (796)
+...-.+.+.+-.+ +-++++|+-... +....+.+...+... ..|..||++|.+.+...
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 22333344555556 778888987432 222233333333321 24666889998876553
No 266
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.36 E-value=0.0081 Score=62.70 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=48.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCccc----cccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHH
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNNEGV----KRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQ 110 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 110 (796)
...+-+.|||..|.|||.|+..+|+.... +.||. .+..++.+.+......... +..+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~~~~~----l~~va 121 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRGQDDP----LPQVA 121 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhCCCcc----HHHHH
Confidence 45688999999999999999999987433 22332 3333333333322222222 33444
Q ss_pred HHhCCceEEEEEeCCCCCC
Q 003773 111 ESIRGKKFFLVLDDVWDGD 129 (796)
Q Consensus 111 ~~l~~~~~LlvlDd~~~~~ 129 (796)
+.+.++..||.||.+.-.+
T Consensus 122 ~~l~~~~~lLcfDEF~V~D 140 (362)
T PF03969_consen 122 DELAKESRLLCFDEFQVTD 140 (362)
T ss_pred HHHHhcCCEEEEeeeeccc
Confidence 5566778899999985443
No 267
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.34 E-value=0.0063 Score=53.59 Aligned_cols=44 Identities=32% Similarity=0.360 Sum_probs=32.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKS 95 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 95 (796)
+|.|.|++|+||||+|+.++++.. -.| | +...+++++++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g--l~~-----v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG--LKL-----V------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC--Cce-----e------eccHHHHHHHHHcCCC
Confidence 688999999999999999998721 111 1 3346788888887654
No 268
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.34 E-value=0.02 Score=62.80 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=39.1
Q ss_pred ccccCcccccHHHHH----HHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEE
Q 003773 11 ARLKLQIEGLDDDNT----LALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVC 74 (796)
Q Consensus 11 ~~~~~~~vGr~~~~~----~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~ 74 (796)
|....+++--.+-++ ++.....+....+++.++|++|+||||.++.+++. -.|+.+=|.+
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~n 78 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWIN 78 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecC
Confidence 444445444443333 44433333444679999999999999999999976 3466666753
No 269
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.30 E-value=0.016 Score=58.69 Aligned_cols=88 Identities=17% Similarity=0.175 Sum_probs=47.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcC-CHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAF-EEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIR 114 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 114 (796)
..++++|+|+.|+||||++..++.....+..-..+..|+..... .....+....+.++.......+..++.+.+.+ +.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~-~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR-LR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH-cc
Confidence 35699999999999999998887763222111245666654321 11222233334444333223334444444443 33
Q ss_pred CceEEEEEeCC
Q 003773 115 GKKFFLVLDDV 125 (796)
Q Consensus 115 ~~~~LlvlDd~ 125 (796)
+ .=+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 346777753
No 270
>PRK09354 recA recombinase A; Provisional
Probab=96.27 E-value=0.0074 Score=61.95 Aligned_cols=85 Identities=21% Similarity=0.273 Sum_probs=54.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCC-----CCCccHHHHHHHH
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSA-----SSLGEFQSLMQQT 109 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~~ 109 (796)
+.-+++-|+|++|+||||||.+++.. ....-..++||+....++.. .++.++... ......++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 34578999999999999999887765 33344568999887766653 344443221 1122344455555
Q ss_pred HHHhC-CceEEEEEeCCC
Q 003773 110 QESIR-GKKFFLVLDDVW 126 (796)
Q Consensus 110 ~~~l~-~~~~LlvlDd~~ 126 (796)
...++ +..-+||+|.+-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55443 456689999983
No 271
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.27 E-value=0.016 Score=53.57 Aligned_cols=115 Identities=13% Similarity=0.094 Sum_probs=62.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCc--CCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDA--FEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRG 115 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 115 (796)
.+++|.|+.|.|||||++.++... ....+.+++..... .+.... ..+..+- ..+....+...-.+.+.+-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~-~~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDA---RRAGIAM-VYQLSVGERQMVEIARALAR 99 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHH---HhcCeEE-EEecCHHHHHHHHHHHHHhc
Confidence 589999999999999999998752 33445555432111 111111 1111111 11122233333445566677
Q ss_pred ceEEEEEeCCCC-CCccChhhHhhhccCC-CCCcEEEEEecchhhh
Q 003773 116 KKFFLVLDDVWD-GDFKKWDPFFSCLKNG-HHESKILITTRDRSVA 159 (796)
Q Consensus 116 ~~~LlvlDd~~~-~~~~~~~~l~~~~~~~-~~gs~iiiTsr~~~~~ 159 (796)
++-++++|+-.. -+......+...+... ..|..||++|.+....
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 788889998743 2222233344433322 2356688888886543
No 272
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.26 E-value=0.015 Score=60.57 Aligned_cols=88 Identities=15% Similarity=0.153 Sum_probs=50.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCc-CCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDA-FEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRG 115 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 115 (796)
-++++++|+.|+||||++.+++.....+.....+..++.... ....+-++...+.++.......+..+....+. .+.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l~~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-ELRN 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-HhcC
Confidence 469999999999999999888876322222235666654332 23344455555666544332222223333333 3444
Q ss_pred ceEEEEEeCCC
Q 003773 116 KKFFLVLDDVW 126 (796)
Q Consensus 116 ~~~LlvlDd~~ 126 (796)
+ -++++|..-
T Consensus 216 ~-DlVLIDTaG 225 (374)
T PRK14722 216 K-HMVLIDTIG 225 (374)
T ss_pred C-CEEEEcCCC
Confidence 4 456689874
No 273
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.25 E-value=0.014 Score=59.78 Aligned_cols=58 Identities=22% Similarity=0.241 Sum_probs=40.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccc----ccCCeEEEEEeCCcCCHHHHHHHHHHHhcc
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVK----RKFDIVIWVCVSDAFEEIRIAKAILEVLDK 94 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 94 (796)
.-+++-|+|++|+|||+++..++-..... ..=..++||+....++.+++.+ +++.++.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 44788999999999999997665321111 1124699999988888888754 5565543
No 274
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.25 E-value=0.0021 Score=36.32 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=13.6
Q ss_pred ccceEecCCCCccccchhhhc
Q 003773 458 HLKYLNLSELCIERLPETLCE 478 (796)
Q Consensus 458 ~L~~L~l~~~~i~~lp~~i~~ 478 (796)
+|++|++++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466777777776666666544
No 275
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.03 Score=60.74 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=23.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...+-|..+|++|+|||++|+++++.
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne 491 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANE 491 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhh
Confidence 34578889999999999999999997
No 276
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.23 E-value=0.13 Score=52.92 Aligned_cols=49 Identities=27% Similarity=0.190 Sum_probs=32.9
Q ss_pred eEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhH
Q 003773 167 IISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAA 216 (796)
Q Consensus 167 ~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 216 (796)
++++.+++.+|+..++.-..-.+-- ......+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l-~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWL-RSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcc-ccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999998776532211 111233445666777779998644
No 277
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.23 E-value=0.018 Score=54.63 Aligned_cols=87 Identities=16% Similarity=0.173 Sum_probs=48.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCc-CCHHHHHHHHHHHhccCC---CCCccHHHHHH-HHHH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDA-FEEIRIAKAILEVLDKSA---SSLGEFQSLMQ-QTQE 111 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~-~~~~ 111 (796)
+++|.++|+.|+||||.+.+++.+...+ -..+..++.... ....+-++..++.++... ....+..+... .+++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3789999999999998887666653322 334666766532 234455677778877542 22222333332 3333
Q ss_pred HhCCceEEEEEeCC
Q 003773 112 SIRGKKFFLVLDDV 125 (796)
Q Consensus 112 ~l~~~~~LlvlDd~ 125 (796)
.-..+.=++++|-.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 22223347777866
No 278
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.21 E-value=0.023 Score=55.32 Aligned_cols=124 Identities=19% Similarity=0.143 Sum_probs=70.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCC-----cCCHHHHHHHHHHHhccCC-------CCCccHHH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSD-----AFEEIRIAKAILEVLDKSA-------SSLGEFQS 104 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~-------~~~~~~~~ 104 (796)
-.+++|+|.+|.||||+++.+..- ...-.+.++....+ .....+-..++++.++... -+....+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L---~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGL---EEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcC---cCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 369999999999999999999874 23333444443221 1122333445555554321 12223333
Q ss_pred HHHHHHHHhCCceEEEEEeCCCCC-CccChhhHhhhccC--CCCCcEEEEEecchhhhhccC
Q 003773 105 LMQQTQESIRGKKFFLVLDDVWDG-DFKKWDPFFSCLKN--GHHESKILITTRDRSVALQMG 163 (796)
Q Consensus 105 ~~~~~~~~l~~~~~LlvlDd~~~~-~~~~~~~l~~~~~~--~~~gs~iiiTsr~~~~~~~~~ 163 (796)
-.-.|.+.+.-++-++|.|..-+. +...-..+...+.. ...|-..++.|-+-.+++.+.
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence 344577788899999999987331 11111222222221 224556888888876666543
No 279
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.19 E-value=0.024 Score=56.40 Aligned_cols=89 Identities=22% Similarity=0.240 Sum_probs=57.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhcc----CCCCCccHHHHHHHHH
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDK----SASSLGEFQSLMQQTQ 110 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~----~~~~~~~~~~~~~~~~ 110 (796)
+.-+++=|+|+.|.||||+|.+++-. .+..-..++||+....++++.+.+-..+.+.. .........++++.+.
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 44578999999999999999776655 44455589999999888887754333331221 1122223334444444
Q ss_pred HHhCCceEEEEEeCC
Q 003773 111 ESIRGKKFFLVLDDV 125 (796)
Q Consensus 111 ~~l~~~~~LlvlDd~ 125 (796)
+....+--|+|+|.+
T Consensus 136 ~~~~~~i~LvVVDSv 150 (279)
T COG0468 136 RSGAEKIDLLVVDSV 150 (279)
T ss_pred HhccCCCCEEEEecC
Confidence 444444668999988
No 280
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.19 E-value=0.029 Score=50.46 Aligned_cols=104 Identities=17% Similarity=0.165 Sum_probs=56.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCc
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGK 116 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 116 (796)
-.+++|.|..|.|||||++.+.... ....+.+|+.... .++- ..+....+...-.+.+.+-.+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~-~~~lS~G~~~rv~laral~~~ 88 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGY-FEQLSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEE-EccCCHHHHHHHHHHHHHhcC
Confidence 3689999999999999999988752 2234444442100 0000 000112222233345566667
Q ss_pred eEEEEEeCCCC-CCccChhhHhhhccCCCCCcEEEEEecchhhh
Q 003773 117 KFFLVLDDVWD-GDFKKWDPFFSCLKNGHHESKILITTRDRSVA 159 (796)
Q Consensus 117 ~~LlvlDd~~~-~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~~~ 159 (796)
+-++++|+-.. -+......+...+... +..||++|.+.+..
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 78889998743 2222333344434332 23588888775544
No 281
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.18 E-value=0.02 Score=56.54 Aligned_cols=87 Identities=15% Similarity=0.117 Sum_probs=53.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCC------------------
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSA------------------ 96 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------------ 96 (796)
..-.++.|+|.+|+|||++|.++... ....=..++|++... +..++.+++.+ ++...
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~--~~~~g~~~~y~~~e~--~~~~~~~~~~~-~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYG--ALKQGKKVYVITTEN--TSKSYLKQMES-VKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH--HHhCCCEEEEEEcCC--CHHHHHHHHHH-CCCChhHHHhCCCceEEeccccc
Confidence 34578999999999999999888654 112234688888765 34455554322 22110
Q ss_pred --CCCccHHHHHHHHHHHhCC-ceEEEEEeCCC
Q 003773 97 --SSLGEFQSLMQQTQESIRG-KKFFLVLDDVW 126 (796)
Q Consensus 97 --~~~~~~~~~~~~~~~~l~~-~~~LlvlDd~~ 126 (796)
....+.++....+.+.+.. +.-++|+|.+.
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112235566666666653 55689999974
No 282
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.18 E-value=0.02 Score=56.33 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=24.0
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 34 QKGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 34 ~~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+...+|+|.|+.|+|||||++.+...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999988876
No 283
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.16 E-value=0.022 Score=53.26 Aligned_cols=119 Identities=17% Similarity=0.163 Sum_probs=59.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCC--cCCHHHHHHHHHHHhccCCC--C-------CccHHHHH
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSD--AFEEIRIAKAILEVLDKSAS--S-------LGEFQSLM 106 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~--~-------~~~~~~~~ 106 (796)
.+++|.|+.|.|||||++.++... ....+.+++.-.. ..........+. .+..... . ....+...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~~~lLS~G~~qr 104 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNELGDHVG-YLPQDDELFSGSIAENILSGGQRQR 104 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHHHhheE-EECCCCccccCcHHHHCcCHHHHHH
Confidence 589999999999999999998752 2233333332111 011111111110 0000000 0 11122223
Q ss_pred HHHHHHhCCceEEEEEeCCCCC-CccChhhHhhhccCC-CCCcEEEEEecchhhhh
Q 003773 107 QQTQESIRGKKFFLVLDDVWDG-DFKKWDPFFSCLKNG-HHESKILITTRDRSVAL 160 (796)
Q Consensus 107 ~~~~~~l~~~~~LlvlDd~~~~-~~~~~~~l~~~~~~~-~~gs~iiiTsr~~~~~~ 160 (796)
-.+.+.+-.++-++++|+-... +......+...+... ..|..||++|.+.+...
T Consensus 105 v~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 105 LGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 3355556677778899987442 222223333333221 23667888888876553
No 284
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.14 Score=53.49 Aligned_cols=154 Identities=16% Similarity=0.136 Sum_probs=78.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCce
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKK 117 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 117 (796)
|--.++|++|+|||+++.++++. -.|+.. =+..+...+..+ ++.++.. ...+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~----L~ydIy-dLeLt~v~~n~d-Lr~LL~~----------------------t~~k 287 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANY----LNYDIY-DLELTEVKLDSD-LRHLLLA----------------------TPNK 287 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhh----cCCceE-EeeeccccCcHH-HHHHHHh----------------------CCCC
Confidence 55779999999999999999987 334422 122222212112 2222211 2345
Q ss_pred EEEEEeCCCCC------Ccc---C---------hhhHhhhcc--CCCC-CcEEE-EEecchhhhh-----ccCccceEEc
Q 003773 118 FFLVLDDVWDG------DFK---K---------WDPFFSCLK--NGHH-ESKIL-ITTRDRSVAL-----QMGSIDIISV 170 (796)
Q Consensus 118 ~LlvlDd~~~~------~~~---~---------~~~l~~~~~--~~~~-gs~ii-iTsr~~~~~~-----~~~~~~~~~l 170 (796)
-+||+.|++-. ... . +.-+.-++. |... +-||| +||...+-.+ .-..+-.+.+
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 66677766431 000 0 111222221 2222 34655 5666554322 2223457777
Q ss_pred cCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHHH-HHhcC
Q 003773 171 KELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIGN-LLRSK 226 (796)
Q Consensus 171 ~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~-~l~~~ 226 (796)
.-=+.+.-..|+........ + ..++.+|.+...|.-+.=..+|. +|+.+
T Consensus 368 gyCtf~~fK~La~nYL~~~~---~----h~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEE---D----HRLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCC---C----cchhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 77788888888888763221 2 33455566555565444444444 34443
No 285
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.12 E-value=0.074 Score=54.10 Aligned_cols=63 Identities=13% Similarity=0.043 Sum_probs=38.7
Q ss_pred ccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCH
Q 003773 11 ARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEE 81 (796)
Q Consensus 11 ~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 81 (796)
|...+.++=..+....++.++.. .+.|.|.|++|+||||+|+.++.. ....| +.|.++...+.
T Consensus 41 p~~d~~y~f~~~~~~~vl~~l~~---~~~ilL~G~pGtGKTtla~~lA~~--l~~~~---~rV~~~~~l~~ 103 (327)
T TIGR01650 41 PDIDPAYLFDKATTKAICAGFAY---DRRVMVQGYHGTGKSTHIEQIAAR--LNWPC---VRVNLDSHVSR 103 (327)
T ss_pred CCCCCCccCCHHHHHHHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHH--HCCCe---EEEEecCCCCh
Confidence 33444455454455555544431 246889999999999999999886 33332 34555554443
No 286
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.12 E-value=0.19 Score=51.13 Aligned_cols=158 Identities=11% Similarity=0.066 Sum_probs=90.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCc--------cccccCCeEEEEEe-CCcCCHHHHHHHHHHHhccCCCCCccHHHH
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNNE--------GVKRKFDIVIWVCV-SDAFEEIRIAKAILEVLDKSASSLGEFQSL 105 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~~--------~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 105 (796)
.-..+..++|..|.||+++|+.+.+.. ....+-+.+.+++. +.....+++. ++.+.+....
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~--------- 85 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSS--------- 85 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCC---------
Confidence 345677899999999999998887763 11112212333321 1112222221 1222211100
Q ss_pred HHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecch-hhhhc-cCccceEEccCCChHhHHHHHH
Q 003773 106 MQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDR-SVALQ-MGSIDIISVKELGEEECWSLFK 183 (796)
Q Consensus 106 ~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~lf~ 183 (796)
.-.+++-++|+|+++.........+...+..-.+.+.+|++|.+. .+... ......+++.+++.++..+.+.
T Consensus 86 ------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~ 159 (299)
T PRK07132 86 ------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLL 159 (299)
T ss_pred ------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHH
Confidence 002577889999997766566677888887777777777666543 33222 2335789999999999988776
Q ss_pred HHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHH
Q 003773 184 QVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKV 218 (796)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 218 (796)
+.. . + ++.+..++...+|.--|+..
T Consensus 160 ~~~----~---~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 160 SKN----K---E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred HcC----C---C---hhHHHHHHHHcCCHHHHHHH
Confidence 531 0 1 23355566666663345444
No 287
>PRK08233 hypothetical protein; Provisional
Probab=96.12 E-value=0.017 Score=54.58 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..+|+|.|.+|+||||+|+.++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999876
No 288
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.11 E-value=0.0052 Score=54.08 Aligned_cols=25 Identities=32% Similarity=0.275 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcc
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEG 62 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~ 62 (796)
-.|+|+|++|+||||+++.+++..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHH
Confidence 4688999999999999999998743
No 289
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.08 E-value=0.054 Score=51.86 Aligned_cols=64 Identities=14% Similarity=0.081 Sum_probs=39.8
Q ss_pred ccHHHHHHHHHHHhCCceEEEEEeCCCC-CCccChhhHhhhccCC--CCCcEEEEEecchhhhhccC
Q 003773 100 GEFQSLMQQTQESIRGKKFFLVLDDVWD-GDFKKWDPFFSCLKNG--HHESKILITTRDRSVALQMG 163 (796)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~LlvlDd~~~-~~~~~~~~l~~~~~~~--~~gs~iiiTsr~~~~~~~~~ 163 (796)
...++-.-.+.+.+-..+-+|+-|+=-. -+.+.-..+...+... ..|..||+.|-+..++..++
T Consensus 144 SGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 144 SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 3344445567778888888999986421 1222333444444432 34677999999999987543
No 290
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.08 E-value=0.04 Score=57.05 Aligned_cols=90 Identities=12% Similarity=0.138 Sum_probs=48.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcC-CHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAF-EEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIR 114 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 114 (796)
..++|+|+|++|+||||++..++.... ...+ .+..++..... ...+-++..++.++.......+...+.+.+...-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~-~~Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKKK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH-HcCC-cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 357999999999999999988876532 2222 35555544321 11222233333444332222344444444433322
Q ss_pred C-ceEEEEEeCCCC
Q 003773 115 G-KKFFLVLDDVWD 127 (796)
Q Consensus 115 ~-~~~LlvlDd~~~ 127 (796)
. +.=++++|-.-.
T Consensus 318 ~~~~DvVLIDTaGR 331 (436)
T PRK11889 318 EARVDYILIDTAGK 331 (436)
T ss_pred ccCCCEEEEeCccc
Confidence 1 234778887743
No 291
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.07 E-value=0.012 Score=61.26 Aligned_cols=134 Identities=13% Similarity=0.068 Sum_probs=69.7
Q ss_pred cCcccccHHHHHHHhcccCC-CCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHh
Q 003773 14 KLQIEGLDDDNTLALASSEQ-QKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVL 92 (796)
Q Consensus 14 ~~~~vGr~~~~~~l~~~~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 92 (796)
...++|+...++.+.+.... .....-|.|+|..|+||+++|+.+.... ...-...+.|++.... ...+...++..-
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s--~r~~~pfv~v~c~~~~-~~~~~~~lfg~~ 81 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLS--SRWQGPFISLNCAALN-ENLLDSELFGHE 81 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhC--CccCCCeEEEeCCCCC-HHHHHHHHcccc
Confidence 45689999998855544211 1223467899999999999999887642 1111234556666532 222233232111
Q ss_pred ccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCC-----------CCcEEEEEecc
Q 003773 93 DKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGH-----------HESKILITTRD 155 (796)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~-----------~gs~iiiTsr~ 155 (796)
......... .....+ .....=.++||++..........+...+.... ...|||.||..
T Consensus 82 ~~~~~g~~~--~~~g~l---~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 82 AGAFTGAQK--RHPGRF---ERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred ccccCCccc--ccCCch---hccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 110000000 000111 11223357899997765555556665553321 13578887754
No 292
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.06 E-value=0.009 Score=55.22 Aligned_cols=80 Identities=15% Similarity=0.181 Sum_probs=43.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCC---ccHHHHHHHHHHHhCC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSL---GEFQSLMQQTQESIRG 115 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~~~l~~ 115 (796)
++.|.|.+|+|||++|..++... .. .++++...... ..+..+.|........... +...++...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~--~~---~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS--GL---QVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc--CC---CcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 68899999999999998887651 11 24455444433 3345555544433222111 1111233334333333
Q ss_pred ceEEEEEeCC
Q 003773 116 KKFFLVLDDV 125 (796)
Q Consensus 116 ~~~LlvlDd~ 125 (796)
.-++++|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 337889987
No 293
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.06 E-value=0.048 Score=50.92 Aligned_cols=122 Identities=18% Similarity=0.180 Sum_probs=69.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeC-------------------CcC-------------------
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVS-------------------DAF------------------- 79 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~-------------------~~~------------------- 79 (796)
.+++|.|++|.||||+.+-+..-+ ..=++.+|++.. +.|
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE---~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v 105 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLE---EPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV 105 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCc---CCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH
Confidence 599999999999999998776532 222344554321 011
Q ss_pred ------CHHHHHHHHHHHhccC------CCCCccHHHHHHHHHHHhCCceEEEEEeCCCCC-CccChhhHhhhccC-CCC
Q 003773 80 ------EEIRIAKAILEVLDKS------ASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDG-DFKKWDPFFSCLKN-GHH 145 (796)
Q Consensus 80 ------~~~~~~~~i~~~l~~~------~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~-~~~~~~~l~~~~~~-~~~ 145 (796)
..++...++++.++.. +.+....++-.-.|.+.|.-++-++.+|...+. +++....+...... ...
T Consensus 106 ~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e 185 (240)
T COG1126 106 KKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 185 (240)
T ss_pred cCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc
Confidence 1133344444444432 223334444455677888888889999998542 23333333333322 235
Q ss_pred CcEEEEEecchhhhhcc
Q 003773 146 ESKILITTRDRSVALQM 162 (796)
Q Consensus 146 gs~iiiTsr~~~~~~~~ 162 (796)
|-..|+.|-+...|+.+
T Consensus 186 GmTMivVTHEM~FAr~V 202 (240)
T COG1126 186 GMTMIIVTHEMGFAREV 202 (240)
T ss_pred CCeEEEEechhHHHHHh
Confidence 66788888775555543
No 294
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.05 E-value=0.013 Score=67.85 Aligned_cols=134 Identities=15% Similarity=0.129 Sum_probs=71.8
Q ss_pred cCcccccHHHHHHHhcccCC-CCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHh
Q 003773 14 KLQIEGLDDDNTLALASSEQ-QKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVL 92 (796)
Q Consensus 14 ~~~~vGr~~~~~~l~~~~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 92 (796)
...++|+...++.+.+.... .....-|.|+|..|+|||++|+.++.... ..-...+.+++.... ...+...+....
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~--r~~~~~v~i~c~~~~-~~~~~~~lfg~~ 451 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG--RNNRRMVKMNCAAMP-AGLLESDLFGHE 451 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC--CCCCCeEEEecccCC-hhHhhhhhcCcc
Confidence 34699999988865443211 12334688999999999999999987632 122235556665432 122222222211
Q ss_pred ccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCC-----------CCcEEEEEecc
Q 003773 93 DKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGH-----------HESKILITTRD 155 (796)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~-----------~gs~iiiTsr~ 155 (796)
.+...... ......+ -....-.++||++.....+....+...+.... ...|||.||..
T Consensus 452 ~~~~~g~~--~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 452 RGAFTGAS--AQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred cccccccc--cchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 11111100 0111111 12234579999997755555555655553321 24588888764
No 295
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.02 E-value=0.041 Score=53.51 Aligned_cols=120 Identities=20% Similarity=0.195 Sum_probs=67.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccc-----c------ccC---CeEEEEEeCCcC------CH----------------
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGV-----K------RKF---DIVIWVCVSDAF------EE---------------- 81 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~-----~------~~f---~~~~wv~~~~~~------~~---------------- 81 (796)
..++|.|+.|.|||||++.+.--... . ... ..+.||+-...+ ++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 69999999999999999999883110 0 011 246666432111 11
Q ss_pred ------HHHHHHHHHHhccC------CCCCccHHHHHHHHHHHhCCceEEEEEeCCCC----CCccChhhHhhhccCCCC
Q 003773 82 ------IRIAKAILEVLDKS------ASSLGEFQSLMQQTQESIRGKKFFLVLDDVWD----GDFKKWDPFFSCLKNGHH 145 (796)
Q Consensus 82 ------~~~~~~i~~~l~~~------~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~----~~~~~~~~l~~~~~~~~~ 145 (796)
.+.....++.++.. ..+...-+.-.-.+.+.|..++=|++||.-.. ......-.+...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 13333444444332 12223334444557788889999999997533 2222222333333333
Q ss_pred CcEEEEEecchhhh
Q 003773 146 ESKILITTRDRSVA 159 (796)
Q Consensus 146 gs~iiiTsr~~~~~ 159 (796)
|..|+++|-+-...
T Consensus 189 g~tIl~vtHDL~~v 202 (254)
T COG1121 189 GKTVLMVTHDLGLV 202 (254)
T ss_pred CCEEEEEeCCcHHh
Confidence 78899999885443
No 296
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.02 E-value=0.004 Score=59.37 Aligned_cols=108 Identities=20% Similarity=0.192 Sum_probs=52.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHh---
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESI--- 113 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l--- 113 (796)
-+++.|.|.+|+||||+++.+....... . ..++++. ... .....+.+..+.. ...+..........-
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~-g-~~v~~~a-pT~----~Aa~~L~~~~~~~---a~Ti~~~l~~~~~~~~~~ 87 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAA-G-KRVIGLA-PTN----KAAKELREKTGIE---AQTIHSFLYRIPNGDDEG 87 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHT-T---EEEEE-SSH----HHHHHHHHHHTS----EEEHHHHTTEECCEECCS
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhC-C-CeEEEEC-CcH----HHHHHHHHhhCcc---hhhHHHHHhcCCcccccc
Confidence 3688899999999999998887653222 2 2244433 222 2222233333211 111111000000000
Q ss_pred ---CCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecch
Q 003773 114 ---RGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDR 156 (796)
Q Consensus 114 ---~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~ 156 (796)
..++-++|+|++.-.+...+..+...... .|+|+|+.--..
T Consensus 88 ~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 88 RPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp SCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred cccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 12335999999966555556666655554 467888776544
No 297
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.00 E-value=0.059 Score=57.74 Aligned_cols=88 Identities=18% Similarity=0.104 Sum_probs=48.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCc-CCHHHHHHHHHHHhccCCCC---CccHHHHHHHHHH
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDA-FEEIRIAKAILEVLDKSASS---LGEFQSLMQQTQE 111 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~ 111 (796)
...+|.++|..|+||||+|..++..... ..+ .+.-|++... ....+.++.++++++..... ..+.........+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~-~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKK-KGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHH-cCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 4679999999999999999888876332 223 3444544331 12233455556665432211 1222233333333
Q ss_pred HhCCceEEEEEeCCC
Q 003773 112 SIRGKKFFLVLDDVW 126 (796)
Q Consensus 112 ~l~~~~~LlvlDd~~ 126 (796)
...+. -++|+|..-
T Consensus 172 ~~~~~-DvVIIDTAG 185 (437)
T PRK00771 172 KFKKA-DVIIVDTAG 185 (437)
T ss_pred HhhcC-CEEEEECCC
Confidence 33443 568888773
No 298
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.99 E-value=0.024 Score=58.62 Aligned_cols=58 Identities=24% Similarity=0.180 Sum_probs=41.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccc----cccCCeEEEEEeCCcCCHHHHHHHHHHHhcc
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGV----KRKFDIVIWVCVSDAFEEIRIAKAILEVLDK 94 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 94 (796)
.-+++-|+|++|+|||+++..++-.... ...-..++||+....++++++.+ +++.++.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 4478889999999999999777532111 11224699999999888888754 5555543
No 299
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.96 E-value=0.045 Score=57.61 Aligned_cols=89 Identities=16% Similarity=0.229 Sum_probs=51.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccc--ccCCeEEEEEeCCcCCHH--HHHHHHHHHhccCCCCCccHHHHHHHHHH
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVK--RKFDIVIWVCVSDAFEEI--RIAKAILEVLDKSASSLGEFQSLMQQTQE 111 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--~~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 111 (796)
..++|.++|+.|+||||.+..++...... .+-..+..+++.. +... .-++..++.++.........++....+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt-~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN-YRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC-ccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 35799999999999999998877653221 1123455555543 2222 22444555555433333344444444443
Q ss_pred HhCCceEEEEEeCCCC
Q 003773 112 SIRGKKFFLVLDDVWD 127 (796)
Q Consensus 112 ~l~~~~~LlvlDd~~~ 127 (796)
. .+.-++++|....
T Consensus 252 ~--~~~DlVLIDTaGr 265 (388)
T PRK12723 252 S--KDFDLVLVDTIGK 265 (388)
T ss_pred h--CCCCEEEEcCCCC
Confidence 3 4456888998854
No 300
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.94 E-value=0.044 Score=51.05 Aligned_cols=109 Identities=13% Similarity=-0.016 Sum_probs=56.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCc
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGK 116 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 116 (796)
-.+++|.|+.|+|||||++.++.-. ....+.+++.... .. .. .........+...-.+.+.+..+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~-i~----------~~-~q~~~LSgGq~qrv~laral~~~ 89 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGIT-PV----------YK-PQYIDLSGGELQRVAIAAALLRN 89 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEE-EE----------EE-cccCCCCHHHHHHHHHHHHHhcC
Confidence 3599999999999999999988752 2223333321100 00 00 00000222233333455666677
Q ss_pred eEEEEEeCCCCC-CccChhhHhhhccCC--CCCcEEEEEecchhhhh
Q 003773 117 KFFLVLDDVWDG-DFKKWDPFFSCLKNG--HHESKILITTRDRSVAL 160 (796)
Q Consensus 117 ~~LlvlDd~~~~-~~~~~~~l~~~~~~~--~~gs~iiiTsr~~~~~~ 160 (796)
+-++++|+-... +......+...+... ..+..||++|.+.....
T Consensus 90 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 90 ATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 888999987432 222222333333221 12245888888765443
No 301
>PRK13695 putative NTPase; Provisional
Probab=95.92 E-value=0.012 Score=55.12 Aligned_cols=23 Identities=35% Similarity=0.327 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 003773 39 IISLFGLGGIGKTTLAQLAFNNE 61 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~~ 61 (796)
.|+|+|.+|+||||+++.+++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999988763
No 302
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.89 E-value=0.04 Score=51.49 Aligned_cols=117 Identities=21% Similarity=0.198 Sum_probs=60.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhc---cCC---CC--------CccHH
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLD---KSA---SS--------LGEFQ 103 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~---~~~---~~--------~~~~~ 103 (796)
.+++|.|+.|.|||||++.++... ....+.+++.-....... ..+.+.++ ... .. ....+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~ 100 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHHH
Confidence 589999999999999999988752 223344443211100000 01111111 000 00 11122
Q ss_pred HHHHHHHHHhCCceEEEEEeCCCCC-CccChhhHhhhccCC-CCCcEEEEEecchhhhh
Q 003773 104 SLMQQTQESIRGKKFFLVLDDVWDG-DFKKWDPFFSCLKNG-HHESKILITTRDRSVAL 160 (796)
Q Consensus 104 ~~~~~~~~~l~~~~~LlvlDd~~~~-~~~~~~~l~~~~~~~-~~gs~iiiTsr~~~~~~ 160 (796)
...-.+.+.+..++-++++|+-... +......+...+... ..|..||++|.+.....
T Consensus 101 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 101 KQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 2333455667788889999987442 222223333333321 23567888888866544
No 303
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.89 E-value=0.001 Score=63.63 Aligned_cols=82 Identities=27% Similarity=0.276 Sum_probs=51.1
Q ss_pred HhhhcCcccceeeecccccCCCcccccccccccccCccccceEecCCCCccccch--hhhccCCccEeeccccccccccc
Q 003773 420 ELFSKVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPE--TLCELYNLQKLAVRWCTNLRELP 497 (796)
Q Consensus 420 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~~~~lp 497 (796)
+++.+|+.|++|.|+ -|.+..+ ..+..|++|+.|.|+.|.|..+-. .+.+|++|++|.|..|+.-..-+
T Consensus 35 sic~kMp~lEVLsLS--------vNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 35 SICEKMPLLEVLSLS--------VNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAG 105 (388)
T ss_pred HHHHhcccceeEEee--------ccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccc
Confidence 445677777777777 6666655 235667777777777777665532 45677777777777666544433
Q ss_pred h-----hhccccCCCeee
Q 003773 498 A-----GIGKLMNMRSLM 510 (796)
Q Consensus 498 ~-----~~~~l~~L~~L~ 510 (796)
. .+.-|++|+.|+
T Consensus 106 ~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 106 QNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHHHHHHHHcccchhcc
Confidence 2 244566666665
No 304
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.82 E-value=0.0086 Score=63.84 Aligned_cols=53 Identities=21% Similarity=0.177 Sum_probs=38.9
Q ss_pred ccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCC
Q 003773 13 LKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFD 68 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~ 68 (796)
....|+||++.++.++..+..+ .-|.|.|++|+|||++|+.+.........|.
T Consensus 18 l~~~i~gre~vI~lll~aalag---~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 18 LEKGLYERSHAIRLCLLAALSG---ESVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred HhhhccCcHHHHHHHHHHHccC---CCEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 4567999999999666554322 3577999999999999999987633223443
No 305
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.12 Score=55.70 Aligned_cols=92 Identities=18% Similarity=0.204 Sum_probs=53.7
Q ss_pred cccccHHHHHHHhcc---c--------CCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHH
Q 003773 16 QIEGLDDDNTLALAS---S--------EQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRI 84 (796)
Q Consensus 16 ~~vGr~~~~~~l~~~---~--------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 84 (796)
++=|.+..+.+|... . .+-...+-|.++|++|+|||.||++++.+ ..-.| +.++..
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~vPf-----~~isAp------ 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LGVPF-----LSISAP------ 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cCCce-----Eeecch------
Confidence 466888888743322 1 11234577889999999999999999998 33333 222221
Q ss_pred HHHHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCC
Q 003773 85 AKAILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWD 127 (796)
Q Consensus 85 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~ 127 (796)
.|.....+ ...+.+.+...+....-++++++|+++.
T Consensus 258 --eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 --EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred --hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 11111111 1122223333344567799999999965
No 306
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.79 E-value=0.02 Score=54.15 Aligned_cols=79 Identities=18% Similarity=0.252 Sum_probs=43.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCC-HHHHHHHHHHHhccCCCCCccHHHHHHHHHHHh
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFE-EIRIAKAILEVLDKSASSLGEFQSLMQQTQESI 113 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 113 (796)
..+.+|+|.|.+|+||||+|+.++.. .....-.+ ++...-+. ....-..--....-..+..-+.+-..+.+...+
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~--~~~~~~~~--I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~ 81 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ--LGVEKVVV--ISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLK 81 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH--hCcCcceE--eeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHH
Confidence 34579999999999999999999987 33232112 22111111 000000000011112344556677777777777
Q ss_pred CCce
Q 003773 114 RGKK 117 (796)
Q Consensus 114 ~~~~ 117 (796)
.+++
T Consensus 82 ~g~~ 85 (218)
T COG0572 82 QGKP 85 (218)
T ss_pred cCCc
Confidence 7777
No 307
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.78 E-value=0.032 Score=52.14 Aligned_cols=22 Identities=45% Similarity=0.517 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
++.+.|++|+||||++..++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999888875
No 308
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.77 E-value=0.028 Score=57.77 Aligned_cols=58 Identities=21% Similarity=0.192 Sum_probs=39.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCccc---cc-cCCeEEEEEeCCcCCHHHHHHHHHHHhc
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNNEGV---KR-KFDIVIWVCVSDAFEEIRIAKAILEVLD 93 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~---~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 93 (796)
..-.++.|+|.+|+|||+++..++..... .. .-..++|++....++..++ .++++.++
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 34579999999999999999877643111 11 1235899998887777764 34455443
No 309
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.76 E-value=0.019 Score=59.67 Aligned_cols=131 Identities=13% Similarity=0.102 Sum_probs=64.4
Q ss_pred ccccHHHHHHHhcccCC-CCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccC
Q 003773 17 IEGLDDDNTLALASSEQ-QKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKS 95 (796)
Q Consensus 17 ~vGr~~~~~~l~~~~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 95 (796)
+||+...++.+.+.... .....-|.|+|..|+||+++|+.+...... .-...+-|++.... ...+...++ +..
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r--~~~pfv~vnc~~~~-~~~l~~~lf---G~~ 74 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKR--WQGPLVKLNCAALS-ENLLDSELF---GHE 74 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCc--cCCCeEEEeCCCCC-hHHHHHHHh---ccc
Confidence 46777777744433211 122345789999999999999988765221 11233445555422 222222222 111
Q ss_pred CCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCC-----------CCcEEEEEecc
Q 003773 96 ASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGH-----------HESKILITTRD 155 (796)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~-----------~gs~iiiTsr~ 155 (796)
.......... ..........-.|+||++..........+...+.... ...|||.||..
T Consensus 75 ~g~~~ga~~~--~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 75 AGAFTGAQKR--HQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred cccccCcccc--cCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 1100000000 0000112234568999997655555555555543321 23478877753
No 310
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.76 E-value=0.03 Score=53.46 Aligned_cols=81 Identities=20% Similarity=0.214 Sum_probs=44.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCccccccCC---eEEEEEeCCcCCHHHHHHHHHHHh----ccCCCCCccHHHHHHHHHH
Q 003773 39 IISLFGLGGIGKTTLAQLAFNNEGVKRKFD---IVIWVCVSDAFEEIRIAKAILEVL----DKSASSLGEFQSLMQQTQE 111 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~i~~~l----~~~~~~~~~~~~~~~~~~~ 111 (796)
+|+|.|.+|+||||+|+++...... .... ....+.............. .... ....+..-+.+...+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHHH
Confidence 6999999999999999999886322 1122 2333333222221221111 1111 1122334566777777777
Q ss_pred HhCCceEEEE
Q 003773 112 SIRGKKFFLV 121 (796)
Q Consensus 112 ~l~~~~~Llv 121 (796)
...++..-+-
T Consensus 79 L~~g~~i~~p 88 (194)
T PF00485_consen 79 LKNGGSIEIP 88 (194)
T ss_dssp HHTTSCEEEE
T ss_pred HhCCCccccc
Confidence 6666665443
No 311
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.76 E-value=0.083 Score=53.62 Aligned_cols=52 Identities=21% Similarity=0.118 Sum_probs=35.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEV 91 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 91 (796)
-.++.|.|.+|+||||++.+++.... ..+=..++|++... +..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 35888999999999999988876522 12124588887655 345555555444
No 312
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.023 Score=58.17 Aligned_cols=81 Identities=20% Similarity=0.294 Sum_probs=52.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCC-----CCccHHHHHHHHHHH
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSAS-----SLGEFQSLMQQTQES 112 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~~ 112 (796)
.+|.|-|.+|||||||..+++.+. ...- .++||+..+..... +--+++++.... ...+++.+.+.+.+
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~l--A~~~-~vLYVsGEES~~Qi---klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~- 166 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARL--AKRG-KVLYVSGEESLQQI---KLRADRLGLPTNNLYLLAETNLEDIIAELEQ- 166 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHH--HhcC-cEEEEeCCcCHHHH---HHHHHHhCCCccceEEehhcCHHHHHHHHHh-
Confidence 689999999999999998888773 2222 68888765533222 223455553322 22455555555544
Q ss_pred hCCceEEEEEeCCCC
Q 003773 113 IRGKKFFLVLDDVWD 127 (796)
Q Consensus 113 l~~~~~LlvlDd~~~ 127 (796)
.++-++|+|-+.+
T Consensus 167 --~~p~lvVIDSIQT 179 (456)
T COG1066 167 --EKPDLVVIDSIQT 179 (456)
T ss_pred --cCCCEEEEeccce
Confidence 5788999999844
No 313
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.73 E-value=0.011 Score=59.28 Aligned_cols=84 Identities=29% Similarity=0.337 Sum_probs=43.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCce
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKK 117 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 117 (796)
+-|.++|+.|+|||++++........ ..| .+.-++++...+...+++.+-..+.......- .--.+|+
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~-~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~----------gP~~~k~ 101 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDS-DKY-LVITINFSAQTTSNQLQKIIESKLEKRRGRVY----------GPPGGKK 101 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTT-CCE-EEEEEES-TTHHHHHHHHCCCTTECECTTEEE----------EEESSSE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCc-ccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCCCC----------CCCCCcE
Confidence 56789999999999999887765211 111 23345555543444433222222111100000 0014789
Q ss_pred EEEEEeCCCCCCccCh
Q 003773 118 FFLVLDDVWDGDFKKW 133 (796)
Q Consensus 118 ~LlvlDd~~~~~~~~~ 133 (796)
.++++||+--...+.|
T Consensus 102 lv~fiDDlN~p~~d~y 117 (272)
T PF12775_consen 102 LVLFIDDLNMPQPDKY 117 (272)
T ss_dssp EEEEEETTT-S---TT
T ss_pred EEEEecccCCCCCCCC
Confidence 9999999954433333
No 314
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.72 E-value=0.037 Score=57.20 Aligned_cols=89 Identities=22% Similarity=0.265 Sum_probs=49.2
Q ss_pred CcEEEEEEcCCCCcHH-HHHHHHHcCccccccCCeEEEEEeCCc-CCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHh
Q 003773 36 GLRIISLFGLGGIGKT-TLAQLAFNNEGVKRKFDIVIWVCVSDA-FEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESI 113 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKT-tLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 113 (796)
+-++|.++|+.|+||| |||+.++......++ ..+..|+...- ....+-++..++.++.......+..+....+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~-~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l- 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKK-KKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL- 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccC-cceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-
Confidence 3689999999999999 666666554212222 34666655431 1223334455566665544444444444444322
Q ss_pred CCceEEEEEeCCCC
Q 003773 114 RGKKFFLVLDDVWD 127 (796)
Q Consensus 114 ~~~~~LlvlDd~~~ 127 (796)
+.. =+|.+|-+..
T Consensus 280 ~~~-d~ILVDTaGr 292 (407)
T COG1419 280 RDC-DVILVDTAGR 292 (407)
T ss_pred hcC-CEEEEeCCCC
Confidence 333 4566676643
No 315
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.71 E-value=0.007 Score=53.37 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003773 40 ISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 40 v~I~G~~GiGKTtLa~~~~~~ 60 (796)
|+|.|.+|+||||+|+++.++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999886
No 316
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.69 E-value=0.21 Score=61.59 Aligned_cols=25 Identities=28% Similarity=0.301 Sum_probs=22.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..+-|.++|++|+|||.||+++|.+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHh
Confidence 4567889999999999999999987
No 317
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.69 E-value=0.029 Score=52.91 Aligned_cols=42 Identities=31% Similarity=0.390 Sum_probs=29.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCH
Q 003773 39 IISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEE 81 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 81 (796)
.|+|+|-||+||||+|..++.....++.|+ ++-|+...+++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCCh
Confidence 589999999999999987555432333343 666777776653
No 318
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.69 E-value=0.06 Score=52.03 Aligned_cols=63 Identities=8% Similarity=-0.011 Sum_probs=36.3
Q ss_pred HHHHhCCceEEEEEeCCCC-CCccChhhHhhhccC-CCCCcEEEEEecchhhhhccCccceEEccCCC
Q 003773 109 TQESIRGKKFFLVLDDVWD-GDFKKWDPFFSCLKN-GHHESKILITTRDRSVALQMGSIDIISVKELG 174 (796)
Q Consensus 109 ~~~~l~~~~~LlvlDd~~~-~~~~~~~~l~~~~~~-~~~gs~iiiTsr~~~~~~~~~~~~~~~l~~l~ 174 (796)
+.+.+-.++-++++|+-.. -+......+...+.. ...|..||++|.+.+.... ...+.++.++
T Consensus 138 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~~~ 202 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGPFA 202 (207)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecCcc
Confidence 4455566778999998743 222223334444432 1235678999888655443 5567776643
No 319
>PRK06696 uridine kinase; Validated
Probab=95.68 E-value=0.01 Score=58.01 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=24.0
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 34 QKGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 34 ~~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.....+|+|.|.+|+||||+|+++++.
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 345689999999999999999999876
No 320
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.67 E-value=0.05 Score=56.36 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=39.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccc----cCCeEEEEEeCCcCCHHHHHHHHHHHhc
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKR----KFDIVIWVCVSDAFEEIRIAKAILEVLD 93 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 93 (796)
.-.++-|+|++|+|||+++.+++....... .=..++||+....++..++.+ +++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 457889999999999999987765422110 113699999988888777543 344443
No 321
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.65 E-value=0.06 Score=48.75 Aligned_cols=22 Identities=41% Similarity=0.566 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
+|.|.|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999998876
No 322
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.078 Score=59.06 Aligned_cols=132 Identities=17% Similarity=0.114 Sum_probs=72.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHH-HHHHHHh
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLM-QQTQESI 113 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~-~~~~~~l 113 (796)
...+.+.++|++|.|||.||+++++. ....|-.+. .. . +... -..+.+..+ +......
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~--~~~~fi~v~-----~~----~----l~sk------~vGesek~ir~~F~~A~ 332 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALE--SRSRFISVK-----GS----E----LLSK------WVGESEKNIRELFEKAR 332 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhh--CCCeEEEee-----CH----H----Hhcc------ccchHHHHHHHHHHHHH
Confidence 34568999999999999999999985 334442221 10 1 1110 011111222 2222333
Q ss_pred CCceEEEEEeCCCCC-----Cc------cChhhHhhhccCCC--CCcEEEEEecchhhhhc-----cCccceEEccCCCh
Q 003773 114 RGKKFFLVLDDVWDG-----DF------KKWDPFFSCLKNGH--HESKILITTRDRSVALQ-----MGSIDIISVKELGE 175 (796)
Q Consensus 114 ~~~~~LlvlDd~~~~-----~~------~~~~~l~~~~~~~~--~gs~iiiTsr~~~~~~~-----~~~~~~~~l~~l~~ 175 (796)
+..+..|++|+++.- .. .....+...+.... .+..||-||........ ..-...+.+..-+.
T Consensus 333 ~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~ 412 (494)
T COG0464 333 KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDL 412 (494)
T ss_pred cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCH
Confidence 578899999999541 11 11222333332222 23334444444332221 13356888999999
Q ss_pred HhHHHHHHHHhh
Q 003773 176 EECWSLFKQVAF 187 (796)
Q Consensus 176 ~e~~~lf~~~~~ 187 (796)
++..+.|+.+..
T Consensus 413 ~~r~~i~~~~~~ 424 (494)
T COG0464 413 EERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHHhc
Confidence 999999998873
No 323
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.65 E-value=0.042 Score=53.40 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
+|+|.|.+|+||||+|+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999998876
No 324
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.63 E-value=0.012 Score=56.32 Aligned_cols=84 Identities=20% Similarity=0.186 Sum_probs=59.7
Q ss_pred hcCcccceeeecccccCCCcccccc-----cccccccCccccceEecCCCCcc----ccc-------hhhhccCCccEee
Q 003773 423 SKVACLRALVIRQWFVPLDDQNFIR-----EIPENIGKLIHLKYLNLSELCIE----RLP-------ETLCELYNLQKLA 486 (796)
Q Consensus 423 ~~~~~L~~L~l~~~~~~~~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~i~----~lp-------~~i~~l~~L~~L~ 486 (796)
.-+..+..++||| |.++ .+...|.+-.+|+..+++.-... ++| +.+-+|++|++.+
T Consensus 27 ~~~d~~~evdLSG--------NtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~ 98 (388)
T COG5238 27 EMMDELVEVDLSG--------NTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVD 98 (388)
T ss_pred HhhcceeEEeccC--------CcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeee
Confidence 4478889999995 4433 24455667788999888864321 333 4466889999999
Q ss_pred ccccccccccchh----hccccCCCeeecCCc
Q 003773 487 VRWCTNLRELPAG----IGKLMNMRSLMNGQT 514 (796)
Q Consensus 487 l~~~~~~~~lp~~----~~~l~~L~~L~l~~~ 514 (796)
|+.|......|.. +..-+.|.||.+++|
T Consensus 99 LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 99 LSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred ccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 9998876666653 556778999999888
No 325
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.63 E-value=0.026 Score=51.83 Aligned_cols=116 Identities=19% Similarity=0.152 Sum_probs=61.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcC--CHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAF--EEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRG 115 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 115 (796)
.+++|.|..|.|||||++.+.... ....+.+++...... .... ..+.++-. .+....+...-.+.+.+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~----~~~~i~~~-~qlS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEE----LRRRIGYV-PQLSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHH----HHhceEEE-eeCCHHHHHHHHHHHHHhc
Confidence 689999999999999999998752 234455554322111 1111 11112111 0122222333345556666
Q ss_pred ceEEEEEeCCCCC-CccChhhHhhhccCC-CCCcEEEEEecchhhhhc
Q 003773 116 KKFFLVLDDVWDG-DFKKWDPFFSCLKNG-HHESKILITTRDRSVALQ 161 (796)
Q Consensus 116 ~~~LlvlDd~~~~-~~~~~~~l~~~~~~~-~~gs~iiiTsr~~~~~~~ 161 (796)
.+-++++|+.... +......+...+... ..+..++++|.+......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 7888999988542 222233333333221 124568888887655443
No 326
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.62 E-value=0.036 Score=58.17 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..+++++|++|+||||++..++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999888764
No 327
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.62 E-value=0.059 Score=55.69 Aligned_cols=90 Identities=20% Similarity=0.093 Sum_probs=52.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCC-HHHHHHHHHHHhccCCCCCccHHHHHHHHHHHh-
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFE-EIRIAKAILEVLDKSASSLGEFQSLMQQTQESI- 113 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l- 113 (796)
..++++|+|+.|+||||++..++.... ..-..+.+|+...... ...-++..++.++.......+..++...+...-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~--~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL--KQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 468999999999999999988876532 2223466776654322 233444455555543222334444444443332
Q ss_pred CCceEEEEEeCCCC
Q 003773 114 RGKKFFLVLDDVWD 127 (796)
Q Consensus 114 ~~~~~LlvlDd~~~ 127 (796)
.+..=+|++|-.-.
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 13456788887743
No 328
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.61 E-value=0.0082 Score=45.95 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
+|+|.|..|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998876
No 329
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.60 E-value=0.038 Score=59.64 Aligned_cols=88 Identities=17% Similarity=0.104 Sum_probs=45.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcC-CHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAF-EEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRG 115 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 115 (796)
.++|+|+|+.|+||||++.+++.....+.....+..++..... .....++...+.++.......+..++...+. .+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~-~l~- 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLE-RLR- 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHH-Hhc-
Confidence 4799999999999999998877652222222345555543211 1112222223333322222223333433333 333
Q ss_pred ceEEEEEeCCC
Q 003773 116 KKFFLVLDDVW 126 (796)
Q Consensus 116 ~~~LlvlDd~~ 126 (796)
..=+|++|..-
T Consensus 428 ~~DLVLIDTaG 438 (559)
T PRK12727 428 DYKLVLIDTAG 438 (559)
T ss_pred cCCEEEecCCC
Confidence 34578888873
No 330
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.59 E-value=0.032 Score=52.38 Aligned_cols=120 Identities=18% Similarity=0.090 Sum_probs=59.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhc---cCCC---C----------Ccc
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLD---KSAS---S----------LGE 101 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~---~~~~---~----------~~~ 101 (796)
.+++|.|+.|.|||||++.++... ....+.+.+..........-.....+.+. .... . ...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~ 103 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLE---EPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSG 103 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCCH
Confidence 589999999999999999998642 22344444321110000000001111111 0000 0 111
Q ss_pred HHHHHHHHHHHhCCceEEEEEeCCCC-CCccChhhHhhhccCC-CC-CcEEEEEecchhhhh
Q 003773 102 FQSLMQQTQESIRGKKFFLVLDDVWD-GDFKKWDPFFSCLKNG-HH-ESKILITTRDRSVAL 160 (796)
Q Consensus 102 ~~~~~~~~~~~l~~~~~LlvlDd~~~-~~~~~~~~l~~~~~~~-~~-gs~iiiTsr~~~~~~ 160 (796)
.+...-.+.+.+..++-++++|+-.. -+......+...+... .. |..||++|.+.+...
T Consensus 104 G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 104 GQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 12222334556667788899998743 2222333343333322 12 566888888765543
No 331
>PTZ00035 Rad51 protein; Provisional
Probab=95.58 E-value=0.06 Score=55.91 Aligned_cols=57 Identities=25% Similarity=0.229 Sum_probs=38.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccc---c-ccCCeEEEEEeCCcCCHHHHHHHHHHHhc
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGV---K-RKFDIVIWVCVSDAFEEIRIAKAILEVLD 93 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~---~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 93 (796)
.-.++.|+|.+|+|||+++..++-.... . ..=..++|++....++.+++ .++++.++
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 4578999999999999999877643211 1 11235789988777777664 34455544
No 332
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.05 Score=62.41 Aligned_cols=119 Identities=14% Similarity=0.215 Sum_probs=70.0
Q ss_pred cCcccccHHHHHHHhccc-------CCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHH
Q 003773 14 KLQIEGLDDDNTLALASS-------EQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAK 86 (796)
Q Consensus 14 ~~~~vGr~~~~~~l~~~~-------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 86 (796)
...++|.++.+..+-++. ......-...+.|+.|+|||.||++++.. .-+..+..+-++++. ...
T Consensus 561 ~~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~--~Fgse~~~IriDmse------~~e 632 (898)
T KOG1051|consen 561 HERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY--VFGSEENFIRLDMSE------FQE 632 (898)
T ss_pred HhhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH--HcCCccceEEechhh------hhh
Confidence 345788888888433321 11124568889999999999999999876 434445566665554 222
Q ss_pred HHHHHhccCCCCCccHHHHHHHHHHHhCCceE-EEEEeCCCCCCccChhhHhhhccCC
Q 003773 87 AILEVLDKSASSLGEFQSLMQQTQESIRGKKF-FLVLDDVWDGDFKKWDPFFSCLKNG 143 (796)
Q Consensus 87 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-LlvlDd~~~~~~~~~~~l~~~~~~~ 143 (796)
+.+..+.. +.... .+....+.+.++.++| +|+|||++..+.+....+...+..+
T Consensus 633 -vskligsp-~gyvG-~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 633 -VSKLIGSP-PGYVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred -hhhccCCC-ccccc-chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 33333332 22111 1122345556666665 6667999877665555555555443
No 333
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.57 E-value=0.082 Score=56.82 Aligned_cols=88 Identities=14% Similarity=0.135 Sum_probs=47.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCC-HHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFE-EIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRG 115 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 115 (796)
.+++.++|++|+||||++..++........-..+..|+...... ...-++..++.++.......+.++....+.+ +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC-
Confidence 36899999999999999877766522112223466676544211 1112223334444332223333444444443 23
Q ss_pred ceEEEEEeCCC
Q 003773 116 KKFFLVLDDVW 126 (796)
Q Consensus 116 ~~~LlvlDd~~ 126 (796)
..=++++|..-
T Consensus 299 ~~DlVlIDt~G 309 (424)
T PRK05703 299 DCDVILIDTAG 309 (424)
T ss_pred CCCEEEEeCCC
Confidence 34678889763
No 334
>PRK14974 cell division protein FtsY; Provisional
Probab=95.57 E-value=0.08 Score=54.64 Aligned_cols=89 Identities=17% Similarity=0.138 Sum_probs=46.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCH--HHHHHHHHHHhccCCCC---CccHHHH-HHHH
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEE--IRIAKAILEVLDKSASS---LGEFQSL-MQQT 109 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~---~~~~~~~-~~~~ 109 (796)
...+|+++|+.|+||||++..++.... ...+. ++.++.. .+.. ..-++..++.++..... ..+.... .+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~~-V~li~~D-t~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGFS-VVIAAGD-TFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCe-EEEecCC-cCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 467999999999999998887776532 22333 4444432 2222 22344455665532211 1121121 2222
Q ss_pred HHHhCCceEEEEEeCCCC
Q 003773 110 QESIRGKKFFLVLDDVWD 127 (796)
Q Consensus 110 ~~~l~~~~~LlvlDd~~~ 127 (796)
........=++++|-.-.
T Consensus 216 ~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 222122223888998844
No 335
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.0014 Score=62.76 Aligned_cols=100 Identities=20% Similarity=0.172 Sum_probs=71.9
Q ss_pred cCcccceeeecccccCCCcccccccccccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccc--hhhc
Q 003773 424 KVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELP--AGIG 501 (796)
Q Consensus 424 ~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp--~~~~ 501 (796)
.+.+.+.|+..| ..+.++ +...+|+.|+.|.||-|.|+.|. .+..|.+|+.|.|+.|. +..+- ..+.
T Consensus 17 dl~~vkKLNcwg--------~~L~DI-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLk 85 (388)
T KOG2123|consen 17 DLENVKKLNCWG--------CGLDDI-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLK 85 (388)
T ss_pred HHHHhhhhcccC--------CCccHH-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHh
Confidence 355667777773 444444 23557999999999999999885 48899999999999876 54443 2467
Q ss_pred cccCCCeeecCCccccccCccc-----CCCCCCcccCC
Q 003773 502 KLMNMRSLMNGQTEKLKYLPIG-----ISRLTSLRTLE 534 (796)
Q Consensus 502 ~l~~L~~L~l~~~~~~~~~p~~-----i~~l~~L~~L~ 534 (796)
++++|+.|-|..|.....-+.. +--|++|+.|+
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8889999999888666554433 34466666665
No 336
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.56 E-value=0.024 Score=57.60 Aligned_cols=83 Identities=24% Similarity=0.290 Sum_probs=49.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCC-----CCccHHHHHHHHH
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSAS-----SLGEFQSLMQQTQ 110 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~ 110 (796)
.-+++-|+|+.|+||||||..+... ..+.-..++||+....++... ++.++.... .....++....+.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHH
Confidence 3479999999999999999877765 334445699999887665533 334443211 1123344555555
Q ss_pred HHhC-CceEEEEEeCC
Q 003773 111 ESIR-GKKFFLVLDDV 125 (796)
Q Consensus 111 ~~l~-~~~~LlvlDd~ 125 (796)
+.++ +.--++|+|.|
T Consensus 125 ~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHTTSESEEEEE-C
T ss_pred HHhhcccccEEEEecC
Confidence 5554 33458889988
No 337
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.53 E-value=0.052 Score=56.30 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=39.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccc----CCeEEEEEeCCcCCHHHHHHHHHHHhc
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRK----FDIVIWVCVSDAFEEIRIAKAILEVLD 93 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~ 93 (796)
.-.++-|+|++|+|||++|.+++-....... =..++||+....++..++.+ +++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 4578999999999999999877654211111 14799999988888777654 344443
No 338
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.53 E-value=0.025 Score=54.66 Aligned_cols=23 Identities=17% Similarity=0.171 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFN 59 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~ 59 (796)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999988763
No 339
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.53 E-value=0.024 Score=54.22 Aligned_cols=110 Identities=12% Similarity=0.179 Sum_probs=54.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCce
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKK 117 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 117 (796)
..|.|.|+.|.||||++..+... ........++. +..+.. .........+..... ..+.....+.++..++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E--~~~~~~~~~i~q~~v-g~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIE--FVHESKRSLINQREV-GLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCcc--ccccCccceeeeccc-CCCccCHHHHHHHHhcCCc
Confidence 47899999999999999887765 22233333332 222111 000000000000000 0111223445666677677
Q ss_pred EEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecchhh
Q 003773 118 FFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDRSV 158 (796)
Q Consensus 118 ~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~~ 158 (796)
=++++|++.+ .+........ ...|..++.|+-...+
T Consensus 76 d~ii~gEird--~e~~~~~l~~---a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 76 DVILVGEMRD--LETIRLALTA---AETGHLVMSTLHTNSA 111 (198)
T ss_pred CEEEEcCCCC--HHHHHHHHHH---HHcCCEEEEEecCCcH
Confidence 7999999943 2223332222 2234556666654433
No 340
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.52 E-value=0.0079 Score=57.60 Aligned_cols=14 Identities=21% Similarity=0.100 Sum_probs=6.2
Q ss_pred ccCCccEeeccccc
Q 003773 478 ELYNLQKLAVRWCT 491 (796)
Q Consensus 478 ~l~~L~~L~l~~~~ 491 (796)
++++|++|++++|+
T Consensus 89 ~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 89 KAPNLKVLNLSGNK 102 (260)
T ss_pred hCCceeEEeecCCc
Confidence 33444444444443
No 341
>PTZ00301 uridine kinase; Provisional
Probab=95.48 E-value=0.024 Score=54.33 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..+|+|.|.+|+||||+|+.+.+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHH
Confidence 368999999999999999988765
No 342
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.47 E-value=0.013 Score=57.48 Aligned_cols=57 Identities=21% Similarity=0.178 Sum_probs=43.3
Q ss_pred CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHH
Q 003773 33 QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAIL 89 (796)
Q Consensus 33 ~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 89 (796)
..+...+|+|+|.+|+|||||..++..+.+.+++=-.|+-|+-++.++-.+++-+=.
T Consensus 47 ~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRi 103 (323)
T COG1703 47 RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRI 103 (323)
T ss_pred cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHh
Confidence 345678999999999999999988888765555555678888888877666655433
No 343
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.47 E-value=0.098 Score=47.88 Aligned_cols=118 Identities=15% Similarity=0.045 Sum_probs=61.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEE---EEEeCCcCCHHHHHHHHHHH---hccC----CCCC----ccH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVI---WVCVSDAFEEIRIAKAILEV---LDKS----ASSL----GEF 102 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~---wv~~~~~~~~~~~~~~i~~~---l~~~----~~~~----~~~ 102 (796)
...|-|++-.|.||||.|..++-+.- ...+. ++ |+...........++.+.-. .+.. .... ...
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~-~~g~~-v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL-GHGKK-VGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH-HCCCe-EEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 35788888899999999976665521 22222 32 22222223333344332000 0100 0000 112
Q ss_pred HHHHHHHHHHhCCce-EEEEEeCCCC---CCccChhhHhhhccCCCCCcEEEEEecch
Q 003773 103 QSLMQQTQESIRGKK-FFLVLDDVWD---GDFKKWDPFFSCLKNGHHESKILITTRDR 156 (796)
Q Consensus 103 ~~~~~~~~~~l~~~~-~LlvlDd~~~---~~~~~~~~l~~~~~~~~~gs~iiiTsr~~ 156 (796)
.+..+..++.+...+ =++|||.+-. ...-..+.+...+.....+..||+|-|+.
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 233344445554444 4999999821 11223455666666666677899999974
No 344
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.46 E-value=0.062 Score=53.14 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=34.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHH
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAI 88 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 88 (796)
.-.++.|.|.+|+|||++|.++... ....-..++|++... +..++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~--~~~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEEeeC--CHHHHHHHH
Confidence 4578999999999999999776554 112345688887765 455555543
No 345
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.45 E-value=0.019 Score=52.76 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=29.7
Q ss_pred ccceEecCCCCccccchhhhccCCccEeeccccccccccchhhc-cccCCCeeecCCc
Q 003773 458 HLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIG-KLMNMRSLMNGQT 514 (796)
Q Consensus 458 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~l~~~ 514 (796)
+...+||++|.+..++. +..++.|.+|.+.+|. +..+-+.+. .+++|..|.+.+|
T Consensus 43 ~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccceecccccchhhccc-CCCccccceEEecCCc-ceeeccchhhhccccceEEecCc
Confidence 34556666666555442 4556666666666655 333333333 3445666666665
No 346
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.44 E-value=0.18 Score=48.72 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|.|..|.|||||++.++..
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999998764
No 347
>PRK06217 hypothetical protein; Validated
Probab=95.43 E-value=0.046 Score=51.63 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 003773 39 IISLFGLGGIGKTTLAQLAFNNE 61 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~~ 61 (796)
.|.|.|.+|+||||+|+++.+..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999863
No 348
>PHA02244 ATPase-like protein
Probab=95.42 E-value=0.04 Score=56.72 Aligned_cols=44 Identities=14% Similarity=-0.025 Sum_probs=30.2
Q ss_pred cCcccccHHHHH----HHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 14 KLQIEGLDDDNT----LALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 14 ~~~~vGr~~~~~----~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...|+|....+. .+..+.. ...-|.|+|++|+|||++|++++..
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~---~~~PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVN---ANIPVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHh---cCCCEEEECCCCCCHHHHHHHHHHH
Confidence 445777666665 2333332 1235778999999999999999876
No 349
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.41 E-value=0.066 Score=53.95 Aligned_cols=26 Identities=35% Similarity=0.286 Sum_probs=21.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
....+|+|.|..|+||||+|+.+..-
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~l 85 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQAL 85 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999876543
No 350
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.40 E-value=0.08 Score=52.11 Aligned_cols=123 Identities=11% Similarity=0.151 Sum_probs=74.9
Q ss_pred cccCcccccHHHHH--HHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHH
Q 003773 12 RLKLQIEGLDDDNT--LALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAIL 89 (796)
Q Consensus 12 ~~~~~~vGr~~~~~--~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 89 (796)
...+.|+|-..-.. ..+.... ..-+.+.++|.+|+|||+-++.+++.. ...+.+..+..++...+...+.
T Consensus 69 ~~~~~~l~tkt~r~~~~~~~~A~--k~g~l~~vyg~~g~gKt~a~~~y~~s~------p~~~l~~~~p~~~a~~~i~~i~ 140 (297)
T COG2842 69 KLAPDFLETKTVRRIFFRTRPAS--KTGSLVVVYGYAGLGKTQAAKNYAPSN------PNALLIEADPSYTALVLILIIC 140 (297)
T ss_pred cccccccccchhHhHhhhhhhhh--hcCceEEEeccccchhHHHHHhhcccC------ccceeecCChhhHHHHHHHHHH
Confidence 35667888777644 2222222 223488899999999999999998761 1122234555555555555555
Q ss_pred HHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCC
Q 003773 90 EVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGH 144 (796)
Q Consensus 90 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~ 144 (796)
....... .....+....+...+++..-++++|+.+......++.+.......+
T Consensus 141 ~~~~~~~--~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~G 193 (297)
T COG2842 141 AAAFGAT--DGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTG 193 (297)
T ss_pred HHHhccc--chhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhhC
Confidence 4443322 2233344555566668888999999987665566666655444443
No 351
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.39 E-value=0.061 Score=55.71 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=40.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccc---cc-cCCeEEEEEeCCcCCHHHHHHHHHHHhcc
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGV---KR-KFDIVIWVCVSDAFEEIRIAKAILEVLDK 94 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~---~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 94 (796)
.-.++-|+|.+|+|||++|..++-.... .. .-..++||+....++.+++. ++++.++.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 4578889999999999999766643111 11 11369999999988887764 45665543
No 352
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.19 Score=54.17 Aligned_cols=130 Identities=15% Similarity=0.156 Sum_probs=72.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHH-HHhCC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQ-ESIRG 115 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~-~~l~~ 115 (796)
..-|.+||++|+|||-||++|++. ....| +++... +++. ...|. -+..++.+. +.=..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP----ELlN---kYVGE-------SErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP----ELLN---KYVGE-------SERAVRQVFQRARAS 603 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH----HHHH---HHhhh-------HHHHHHHHHHHhhcC
Confidence 456789999999999999999998 33343 333321 1111 11221 122233333 33346
Q ss_pred ceEEEEEeCCCCC-----CccCh------hhHhhhccC--CCCCcEEEEEecchhhhh-----ccCccceEEccCCChHh
Q 003773 116 KKFFLVLDDVWDG-----DFKKW------DPFFSCLKN--GHHESKILITTRDRSVAL-----QMGSIDIISVKELGEEE 177 (796)
Q Consensus 116 ~~~LlvlDd~~~~-----~~~~~------~~l~~~~~~--~~~gs~iiiTsr~~~~~~-----~~~~~~~~~l~~l~~~e 177 (796)
-+++|+||.++.. +...| ..+..-+.. ...|.-||-.|..+++.+ .-.-+...-+..-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 7999999999541 11111 222222222 234555665555444322 22234566677777888
Q ss_pred HHHHHHHHhh
Q 003773 178 CWSLFKQVAF 187 (796)
Q Consensus 178 ~~~lf~~~~~ 187 (796)
-.++++....
T Consensus 684 R~~ILK~~tk 693 (802)
T KOG0733|consen 684 RVAILKTITK 693 (802)
T ss_pred HHHHHHHHhc
Confidence 8888888774
No 353
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.38 E-value=0.089 Score=50.65 Aligned_cols=86 Identities=17% Similarity=0.225 Sum_probs=47.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEE-------EeCCcCCHHHH--HHHHHHHhccC-CCCC-----
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWV-------CVSDAFEEIRI--AKAILEVLDKS-ASSL----- 99 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv-------~~~~~~~~~~~--~~~i~~~l~~~-~~~~----- 99 (796)
+....|.++||+|.||||.++.++.+...++.-..++=. ...-+.+.++. .+..+++-+.. ...+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 445678899999999999999998874333322223322 12223344443 45666665432 2222
Q ss_pred ---ccHHHHHHHHHHHhCCceEEE
Q 003773 100 ---GEFQSLMQQTQESIRGKKFFL 120 (796)
Q Consensus 100 ---~~~~~~~~~~~~~l~~~~~Ll 120 (796)
...++.+..|.++-..-++.|
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~~l 120 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDYVL 120 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCEEE
Confidence 234555555555544444443
No 354
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.37 E-value=0.038 Score=51.80 Aligned_cols=26 Identities=31% Similarity=0.310 Sum_probs=22.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNE 61 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 61 (796)
...+|+|.|.+|+||||+|++++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999998863
No 355
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.35 E-value=0.064 Score=53.91 Aligned_cols=89 Identities=16% Similarity=0.152 Sum_probs=47.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHH--HHHHHHHHHhccCC---CCCccHHH-HHHH
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEI--RIAKAILEVLDKSA---SSLGEFQS-LMQQ 108 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~---~~~~~~~~-~~~~ 108 (796)
...+++.++|++|+||||++..++... ...-..+..+++.. +... .-++..++..+... ....+... ....
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 346899999999999999998887653 22223466666543 2222 22233344444221 11112222 2233
Q ss_pred HHHHhCCceEEEEEeCCC
Q 003773 109 TQESIRGKKFFLVLDDVW 126 (796)
Q Consensus 109 ~~~~l~~~~~LlvlDd~~ 126 (796)
+.....+..=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 433333445578888773
No 356
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.34 E-value=0.025 Score=63.52 Aligned_cols=135 Identities=13% Similarity=0.092 Sum_probs=70.5
Q ss_pred ccCcccccHHHHHHHhcccCC-CCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHH
Q 003773 13 LKLQIEGLDDDNTLALASSEQ-QKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEV 91 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 91 (796)
....++|....++.+.+.... ......|.|+|..|+|||++|+.+++... ..-...+.|++..... ..+...++
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~--r~~~pfv~i~c~~~~~-~~~~~~lf-- 268 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP--RAKRPFVKVNCAALSE-TLLESELF-- 268 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeecCCCCH-HHHHHHHc--
Confidence 345799999999966554311 12234677999999999999999987622 1112345556654321 22222221
Q ss_pred hccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCC-----------CCcEEEEEecc
Q 003773 92 LDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGH-----------HESKILITTRD 155 (796)
Q Consensus 92 l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~-----------~gs~iiiTsr~ 155 (796)
+........... ...........-.|+||++..-.......+...+.... ...|||.||..
T Consensus 269 -g~~~~~~~~~~~--~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 269 -GHEKGAFTGAIA--QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNR 340 (534)
T ss_pred -CCCCCccCCCCc--CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCC
Confidence 211100000000 00000012234568899997765555566666554321 12578887753
No 357
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.23 Score=48.59 Aligned_cols=45 Identities=27% Similarity=0.371 Sum_probs=33.0
Q ss_pred cccccHHHHHHHhcc----------c-CCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 16 QIEGLDDDNTLALAS----------S-EQQKGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 16 ~~vGr~~~~~~l~~~----------~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
++-|-|...+.|-++ . ......+-|.++|++|.||+.||++|+..
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE 189 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE 189 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh
Confidence 456777777644433 1 12234688999999999999999999987
No 358
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.33 E-value=0.026 Score=52.50 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.|.|.|.+|+||||+|+.+++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999999987
No 359
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.023 Score=54.11 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=23.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
+..+-|.++|++|.|||-+|++++++
T Consensus 209 dppkgvllygppgtgktl~aravanr 234 (435)
T KOG0729|consen 209 DPPKGVLLYGPPGTGKTLCARAVANR 234 (435)
T ss_pred CCCCceEEeCCCCCchhHHHHHHhcc
Confidence 34567889999999999999999998
No 360
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.33 E-value=0.015 Score=56.32 Aligned_cols=26 Identities=38% Similarity=0.484 Sum_probs=23.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
....+|+|.|.+|+||||||+.++..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999999876
No 361
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.31 E-value=0.036 Score=61.65 Aligned_cols=135 Identities=11% Similarity=0.085 Sum_probs=71.7
Q ss_pred ccCcccccHHHHHHHhcccCC-CCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHH
Q 003773 13 LKLQIEGLDDDNTLALASSEQ-QKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEV 91 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 91 (796)
....++|+...++.+.+.... .....-|.|+|..|+|||++|+.+.+... ..-...+.|++..-.+ ..+...++..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~~~-~~~e~~lfG~ 261 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAALPE-SLAESELFGH 261 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccCCh-HHHHHHhcCc
Confidence 455799999999855544311 12334688999999999999999987622 1222345566665322 2222222211
Q ss_pred hccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCC-----------CCcEEEEEecc
Q 003773 92 LDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGH-----------HESKILITTRD 155 (796)
Q Consensus 92 l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~-----------~gs~iiiTsr~ 155 (796)
..+....... .....+. ....-.|+||++..-..+....+...+.... ...|||.||..
T Consensus 262 ~~g~~~ga~~--~~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 262 VKGAFTGAIS--NRSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred cccccCCCcc--cCCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 1111000000 0000011 1223346899997765555556666554321 24588887764
No 362
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.29 E-value=0.012 Score=54.76 Aligned_cols=26 Identities=38% Similarity=0.474 Sum_probs=23.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcc
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEG 62 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 62 (796)
..+|+|-||-|+||||||++++++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999998843
No 363
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.28 E-value=0.058 Score=56.73 Aligned_cols=81 Identities=19% Similarity=0.239 Sum_probs=47.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCC-----CccHHHHHHHHHH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASS-----LGEFQSLMQQTQE 111 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~~ 111 (796)
-.++.|.|.+|+||||++.+++.. ....-..++|++... +..++. .-++.++..... ..+.+.+.+.+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EE--s~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~- 155 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEE--SPEQIK-LRADRLGISTENLYLLAETNLEDILASIE- 155 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCc--CHHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH-
Confidence 468999999999999999888765 222234688887653 233322 223444432211 123344444332
Q ss_pred HhCCceEEEEEeCC
Q 003773 112 SIRGKKFFLVLDDV 125 (796)
Q Consensus 112 ~l~~~~~LlvlDd~ 125 (796)
..+.-++|+|.+
T Consensus 156 --~~~~~lVVIDSI 167 (372)
T cd01121 156 --ELKPDLVIIDSI 167 (372)
T ss_pred --hcCCcEEEEcch
Confidence 235567888887
No 364
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.28 E-value=0.12 Score=59.01 Aligned_cols=130 Identities=12% Similarity=0.069 Sum_probs=67.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCce
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKK 117 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 117 (796)
+-|.++|++|+|||++|+.++.. ....| +.+..+. +.. .... .........+...-...+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~------~~~----~~~g-----~~~~~~~~~f~~a~~~~P 245 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSD------FVE----MFVG-----VGASRVRDMFEQAKKAAP 245 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHH------hHH----hhhc-----ccHHHHHHHHHHHHhcCC
Confidence 45899999999999999999876 32333 2222221 110 0000 011122222233334567
Q ss_pred EEEEEeCCCCCC----------ccChhhHhh-h---ccCC--CCCcEEEEEecchhhhhc-----cCccceEEccCCChH
Q 003773 118 FFLVLDDVWDGD----------FKKWDPFFS-C---LKNG--HHESKILITTRDRSVALQ-----MGSIDIISVKELGEE 176 (796)
Q Consensus 118 ~LlvlDd~~~~~----------~~~~~~l~~-~---~~~~--~~gs~iiiTsr~~~~~~~-----~~~~~~~~l~~l~~~ 176 (796)
.+|++|+++... ......... . +... ..+.-+|.||...+.... -.....+.+...+.+
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHH
Confidence 899999985421 011111111 1 2221 223344456665443221 123457888888888
Q ss_pred hHHHHHHHHhh
Q 003773 177 ECWSLFKQVAF 187 (796)
Q Consensus 177 e~~~lf~~~~~ 187 (796)
+-.++++.+..
T Consensus 326 ~R~~Il~~~~~ 336 (644)
T PRK10733 326 GREQILKVHMR 336 (644)
T ss_pred HHHHHHHHHhh
Confidence 88888887763
No 365
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.27 E-value=0.016 Score=55.93 Aligned_cols=26 Identities=35% Similarity=0.376 Sum_probs=22.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
+...+|+|.|++|+||||||+.++..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999999999875
No 366
>PRK10867 signal recognition particle protein; Provisional
Probab=95.22 E-value=0.064 Score=57.33 Aligned_cols=25 Identities=36% Similarity=0.383 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...+|.++|.+|+||||.|..++..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~ 123 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKY 123 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999988777765
No 367
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.18 Score=47.61 Aligned_cols=65 Identities=9% Similarity=-0.018 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhCCceEEEEEeCCCC-CCccChhhHhhhccC-CCCCcEEEEEecchhhhhccCccc
Q 003773 102 FQSLMQQTQESIRGKKFFLVLDDVWD-GDFKKWDPFFSCLKN-GHHESKILITTRDRSVALQMGSID 166 (796)
Q Consensus 102 ~~~~~~~~~~~l~~~~~LlvlDd~~~-~~~~~~~~l~~~~~~-~~~gs~iiiTsr~~~~~~~~~~~~ 166 (796)
-+....++.+.+--++-+.|||..++ -+.+....+...+.. ..+|+.+++.|-.++++.....+.
T Consensus 148 GEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~ 214 (251)
T COG0396 148 GEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDK 214 (251)
T ss_pred chHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCE
Confidence 34455566666667788999999865 233344333333322 234666888888777777665433
No 368
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.22 E-value=0.029 Score=53.70 Aligned_cols=118 Identities=18% Similarity=0.185 Sum_probs=57.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCc-------cHHHHHHHH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLG-------EFQSLMQQT 109 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~-------~~~~~~~~~ 109 (796)
.++++|.|+.|.||||+++.+..-... .+. -++|++.. ....+.+.|...++..+.... +..+. ..+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~l-a~~--G~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~-~~i 102 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIM-AQI--GCFVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSET-AYI 102 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-HHc--CCCcchhh--cCccChhheeEecCCccccchhhhHHHHHHHHH-HHH
Confidence 478999999999999999887643110 000 01111111 001122222222222211111 11111 112
Q ss_pred HHHhCCceEEEEEeCCCCCC-ccC----hhhHhhhccCCCCCcEEEEEecchhhhhccC
Q 003773 110 QESIRGKKFFLVLDDVWDGD-FKK----WDPFFSCLKNGHHESKILITTRDRSVALQMG 163 (796)
Q Consensus 110 ~~~l~~~~~LlvlDd~~~~~-~~~----~~~l~~~~~~~~~gs~iiiTsr~~~~~~~~~ 163 (796)
.+ +..++-|+++|...... ..+ ...+...+.. .++.+|++|-..+++....
T Consensus 103 l~-~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 103 LD-YADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HH-hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 12 23567899999984422 111 1122223332 3678999999887766543
No 369
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.21 E-value=0.16 Score=49.75 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|.|+.|.|||||++.++-.
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999998864
No 370
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.20 E-value=0.003 Score=70.50 Aligned_cols=43 Identities=19% Similarity=0.357 Sum_probs=28.0
Q ss_pred CCccceeeccCCCCCCCCCc-CCC-CCCCccEEEEcCCCchhhcc
Q 003773 738 MPRLSSLEIDCCSKLNVLPD-HLL-QTTTLQELSIRGCPILEERY 780 (796)
Q Consensus 738 l~~L~~L~l~~c~~l~~lp~-~~~-~l~~L~~L~l~~~~~l~~~~ 780 (796)
...|+.|+++.|.....--- ... .+..+..+++++|+.+....
T Consensus 400 ~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 400 SDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred CCccceEecccCccccccchHHHhhhhhccccCCccCcccccchh
Confidence 34489999999965532210 011 16778889999999877654
No 371
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.18 E-value=0.011 Score=50.06 Aligned_cols=21 Identities=43% Similarity=0.640 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003773 40 ISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 40 v~I~G~~GiGKTtLa~~~~~~ 60 (796)
|.|+|++|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999998876
No 372
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.17 E-value=0.063 Score=56.59 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 003773 38 RIISLFGLGGIGKTTLAQLAFN 59 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~ 59 (796)
.+++|.|++|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 4899999999999999998875
No 373
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.16 E-value=0.084 Score=50.67 Aligned_cols=24 Identities=33% Similarity=0.500 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
-.+++|.|..|.|||||++.++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999988875
No 374
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.16 E-value=0.17 Score=50.76 Aligned_cols=128 Identities=12% Similarity=0.031 Sum_probs=72.5
Q ss_pred HHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcccc------------ccCCeEEEEEeCCcCCHHHHHHHHHHHhc
Q 003773 26 LALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVK------------RKFDIVIWVCVSDAFEEIRIAKAILEVLD 93 (796)
Q Consensus 26 ~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 93 (796)
.|......+.-.....++|+.|+||+++|.+++...-.. .|.|.. |+.-...
T Consensus 8 ~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~-~i~p~~~--------------- 71 (290)
T PRK05917 8 ALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIH-EFSPQGK--------------- 71 (290)
T ss_pred HHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEE-EEecCCC---------------
Confidence 344443434445788899999999999998887752111 122221 1110000
Q ss_pred cCCCCCccHHHHHHHHHHHh-----CCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecch-hhhhc-cCccc
Q 003773 94 KSASSLGEFQSLMQQTQESI-----RGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDR-SVALQ-MGSID 166 (796)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~l-----~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~-~~~~~-~~~~~ 166 (796)
.....+++. +.+.+.+ .++.-++|+|+++....+.+..+...+..-..++.+|++|.+. .+... .....
T Consensus 72 ---~~~I~idqi-R~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq 147 (290)
T PRK05917 72 ---GRLHSIETP-RAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSL 147 (290)
T ss_pred ---CCcCcHHHH-HHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcce
Confidence 000112222 1222222 3566788999998887788888988888777777777766663 33222 12244
Q ss_pred eEEccCC
Q 003773 167 IISVKEL 173 (796)
Q Consensus 167 ~~~l~~l 173 (796)
.+.+.++
T Consensus 148 ~~~~~~~ 154 (290)
T PRK05917 148 SIHIPME 154 (290)
T ss_pred EEEccch
Confidence 5666554
No 375
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.13 E-value=0.009 Score=51.02 Aligned_cols=27 Identities=37% Similarity=0.530 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCccccccCC
Q 003773 40 ISLFGLGGIGKTTLAQLAFNNEGVKRKFD 68 (796)
Q Consensus 40 v~I~G~~GiGKTtLa~~~~~~~~~~~~f~ 68 (796)
|.|+|.+|+|||++|+.++.. ....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~--~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS--LGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH--TT--EE
T ss_pred EeeECCCccHHHHHHHHHHHH--cCCcee
Confidence 579999999999999999986 555564
No 376
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.29 Score=55.18 Aligned_cols=178 Identities=13% Similarity=0.078 Sum_probs=94.1
Q ss_pred ccCcccccHHHHHHHhc---ccC--------CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCH
Q 003773 13 LKLQIEGLDDDNTLALA---SSE--------QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEE 81 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~---~~~--------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 81 (796)
.-.++.|-|+..+++.+ -+. +..-++=|.++|++|+|||-||++++-. ..-.| +.++..
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGE--AgVPF-----~svSGS--- 378 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AGVPF-----FSVSGS--- 378 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcc--cCCce-----eeechH---
Confidence 34568898888874332 111 2233567889999999999999999987 33333 333321
Q ss_pred HHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCC------------ccC---hhhHhhhccCCCCC
Q 003773 82 IRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGD------------FKK---WDPFFSCLKNGHHE 146 (796)
Q Consensus 82 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~------------~~~---~~~l~~~~~~~~~g 146 (796)
+..+.+.+. . .....+.....-...+++|.+|+++... .+. +.++..-.......
T Consensus 379 -----EFvE~~~g~--~---asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 379 -----EFVEMFVGV--G---ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred -----HHHHHhccc--c---hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC
Confidence 111111111 0 1111111222224568899999885421 111 11222222222222
Q ss_pred c-EEEE-Eecchhhhh-----ccCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCch
Q 003773 147 S-KILI-TTRDRSVAL-----QMGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPL 214 (796)
Q Consensus 147 s-~iii-Tsr~~~~~~-----~~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 214 (796)
. .|++ +|+..++.+ .-..+..+.+..-+..+..++|.-++-.... ..+..++++ |+...-|.+=
T Consensus 449 ~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~---~~e~~dl~~-~a~~t~gf~g 519 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL---DDEDVDLSK-LASLTPGFSG 519 (774)
T ss_pred CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC---CcchhhHHH-HHhcCCCCcH
Confidence 2 3444 333333322 2233567888888888888999888733222 123345555 8888888773
No 377
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.13 E-value=0.054 Score=54.24 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=29.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSD 77 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 77 (796)
.-.++.|.|++|+|||++|.+++... ...=..++|++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~--a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ--ASRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH--HhCCCcEEEEEecC
Confidence 44789999999999999998876542 12234578888764
No 378
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.13 E-value=0.017 Score=52.07 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
+|.+.|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998754
No 379
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.26 Score=52.26 Aligned_cols=48 Identities=23% Similarity=0.246 Sum_probs=33.8
Q ss_pred cCcccccHHHHH---HHhcccCC--------CCCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 003773 14 KLQIEGLDDDNT---LALASSEQ--------QKGLRIISLFGLGGIGKTTLAQLAFNNE 61 (796)
Q Consensus 14 ~~~~vGr~~~~~---~l~~~~~~--------~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 61 (796)
-.++-|-|+..+ ++++.+.+ +.=.+-|.++|++|.|||-||++++-..
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 455678877666 33333221 2224678899999999999999999873
No 380
>PRK06547 hypothetical protein; Provisional
Probab=95.08 E-value=0.021 Score=52.90 Aligned_cols=26 Identities=35% Similarity=0.382 Sum_probs=23.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
....+|+|.|.+|+||||+|+.+++.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999875
No 381
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.06 E-value=0.047 Score=60.72 Aligned_cols=134 Identities=11% Similarity=0.066 Sum_probs=68.5
Q ss_pred ccCcccccHHHHHHHhcccC-CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHH
Q 003773 13 LKLQIEGLDDDNTLALASSE-QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEV 91 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 91 (796)
.-+.++|....++.+++... -...-..|.|+|..|+||+.+|+++.... ...-...+.+++..-. ...+...+...
T Consensus 202 ~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s--~r~~~pfv~inca~~~-~~~~e~elFG~ 278 (520)
T PRK10820 202 AFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRS--PRGKKPFLALNCASIP-DDVVESELFGH 278 (520)
T ss_pred cccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhC--CCCCCCeEEeccccCC-HHHHHHHhcCC
Confidence 44579999988885554321 01122457899999999999999976542 1111234556665532 12222222211
Q ss_pred hccCCCCCcc-HHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCC-----------CCcEEEEEecc
Q 003773 92 LDKSASSLGE-FQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGH-----------HESKILITTRD 155 (796)
Q Consensus 92 l~~~~~~~~~-~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~-----------~gs~iiiTsr~ 155 (796)
..+....... .... +. ....-.++||+++.........+...+.... ...|||.||..
T Consensus 279 ~~~~~~~~~~~~~g~---~e---~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~ 348 (520)
T PRK10820 279 APGAYPNALEGKKGF---FE---QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQK 348 (520)
T ss_pred CCCCcCCcccCCCCh---hh---hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCC
Confidence 1111000000 0000 00 1223457899997765555556665554321 12478887764
No 382
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.06 E-value=0.076 Score=56.76 Aligned_cols=25 Identities=32% Similarity=0.305 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...++.++|.+|+||||.|..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 3579999999999999998777765
No 383
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.05 E-value=0.12 Score=54.93 Aligned_cols=88 Identities=20% Similarity=0.260 Sum_probs=46.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCc-CCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDA-FEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIR 114 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 114 (796)
.-.+++++|+.|+||||++..++.........+.+..+..... ....+-+...++.++.......+..+....+. .+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~-~l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLH-ELR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHH-Hhc
Confidence 3479999999999999999877654212222233444443321 12223344455555544333333333332222 334
Q ss_pred CceEEEEEeCC
Q 003773 115 GKKFFLVLDDV 125 (796)
Q Consensus 115 ~~~~LlvlDd~ 125 (796)
++ -++++|-.
T Consensus 269 ~~-d~VLIDTa 278 (420)
T PRK14721 269 GK-HMVLIDTV 278 (420)
T ss_pred CC-CEEEecCC
Confidence 33 45666765
No 384
>PRK06762 hypothetical protein; Provisional
Probab=95.04 E-value=0.018 Score=53.49 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+|.|.|++|+||||+|+.+.+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999876
No 385
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.03 E-value=0.028 Score=50.47 Aligned_cols=35 Identities=34% Similarity=0.199 Sum_probs=26.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEE
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVC 74 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~ 74 (796)
.+|-|+|.+|+||||||+++.++. ...-..+.+++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L--~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRL--FARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH--HHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEec
Confidence 588999999999999999999873 33334455554
No 386
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.98 E-value=0.074 Score=53.14 Aligned_cols=114 Identities=14% Similarity=0.046 Sum_probs=58.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhcc---CC-----CCCccHHHHH
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDK---SA-----SSLGEFQSLM 106 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~---~~-----~~~~~~~~~~ 106 (796)
+..+-++|.|+.|.||||+++.++.... ...+.+++.-.. ....+-..+++..... .. ....... ..
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~-v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~-k~ 183 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKK-VGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCP-KA 183 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEE-eecchhHHHHHHHhcccccccccccccccccch-HH
Confidence 3457899999999999999999987632 223333432111 0000111222222211 00 0001111 11
Q ss_pred HHHHHHhC-CceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecchhh
Q 003773 107 QQTQESIR-GKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDRSV 158 (796)
Q Consensus 107 ~~~~~~l~-~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~~ 158 (796)
..+...+. ..+=++++|... ..+.+..+...+. .|..+|+||-+..+
T Consensus 184 ~~~~~~i~~~~P~villDE~~--~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 184 EGMMMLIRSMSPDVIVVDEIG--REEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHHHHhCCCCEEEEeCCC--cHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 12222222 578899999983 3334444544442 46779999986554
No 387
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.97 E-value=0.03 Score=54.17 Aligned_cols=53 Identities=23% Similarity=0.185 Sum_probs=32.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHH
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKA 87 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 87 (796)
+...+|+|+|++|+|||||+.++....+.+.+==.++-|+-+..++--+++-+
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGD 79 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGD 79 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccccc
Confidence 45689999999999999999888877443333334666776666665554433
No 388
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=94.97 E-value=0.022 Score=67.14 Aligned_cols=198 Identities=15% Similarity=0.153 Sum_probs=95.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccc--ccCCeEEEEEeCCcCC----HH--HHHHHHHHHhccCCCCCccHHHHHHH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVK--RKFDIVIWVCVSDAFE----EI--RIAKAILEVLDKSASSLGEFQSLMQQ 108 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~--~~f~~~~wv~~~~~~~----~~--~~~~~i~~~l~~~~~~~~~~~~~~~~ 108 (796)
..-+.|+|.+|.||||....++-..-.+ ..=+..+++-+..-.. .. .+...+...+..... ..+....
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~----~~~~~~~ 297 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGI----AKQLIEA 297 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCC----cchhhHH
Confidence 3478899999999999997776542111 1113344443331111 11 222222222222211 1112222
Q ss_pred HHHHhCCceEEEEEeCCCCCCccChhhHhhh---ccCCCCCcEEEEEecchhhhhccCccceEEccCCChHhHHHH----
Q 003773 109 TQESIRGKKFFLVLDDVWDGDFKKWDPFFSC---LKNGHHESKILITTRDRSVALQMGSIDIISVKELGEEECWSL---- 181 (796)
Q Consensus 109 ~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~---~~~~~~gs~iiiTsr~~~~~~~~~~~~~~~l~~l~~~e~~~l---- 181 (796)
..+.++..++++++|.++......-...... +...-+.+++|+|+|....-........+++..+.++.....
T Consensus 298 ~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~ 377 (824)
T COG5635 298 HQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQ 377 (824)
T ss_pred HHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHH
Confidence 2567889999999999865332222221111 222235678999999754433333344555555554433321
Q ss_pred ----HHHHhhCCCCCC---CCcchhHHHHHHHHhcCCCchhHHHHHHHHhcC-----CCHHHHHHHHhh
Q 003773 182 ----FKQVAFLGRSFE---DCEKLEPIGRKIACKCKGLPLAAKVIGNLLRSK-----RTVSEWQRILDS 238 (796)
Q Consensus 182 ----f~~~~~~~~~~~---~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~-----~~~~~w~~~l~~ 238 (796)
+....++..... ....+..-..+-++.....|++|.+.+..-... ....-|+.+++.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~ 446 (824)
T COG5635 378 WLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDA 446 (824)
T ss_pred HHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHH
Confidence 111111111100 000011112334555588899998888544311 134455555554
No 389
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.96 E-value=0.11 Score=49.60 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
-.+++|.|+.|.|||||++.++..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999999853
No 390
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.95 E-value=0.18 Score=53.75 Aligned_cols=36 Identities=28% Similarity=0.538 Sum_probs=27.7
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEE
Q 003773 34 QKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWV 73 (796)
Q Consensus 34 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv 73 (796)
..+.+++.|+|++|+||||.++.++.. ..+..+=|.
T Consensus 107 ~l~~~iLLltGPsGcGKSTtvkvLske----lg~~~~Ew~ 142 (634)
T KOG1970|consen 107 KLGSRILLLTGPSGCGKSTTVKVLSKE----LGYQLIEWS 142 (634)
T ss_pred CCCceEEEEeCCCCCCchhHHHHHHHh----hCceeeeec
Confidence 345679999999999999999988875 334445554
No 391
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.94 E-value=0.13 Score=54.69 Aligned_cols=47 Identities=23% Similarity=0.200 Sum_probs=33.2
Q ss_pred cCcccccHHHHHHHhccc-------CC---C---C----CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 14 KLQIEGLDDDNTLALASS-------EQ---Q---K----GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 14 ~~~~vGr~~~~~~l~~~~-------~~---~---~----~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...+||.++.++.+..+. .. . . ....|.++|++|+|||++|+.++..
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~ 139 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARI 139 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHh
Confidence 345899999999443211 00 0 1 1257899999999999999999865
No 392
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.94 E-value=0.21 Score=49.20 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|.|+.|.|||||++.++..
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999875
No 393
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.93 E-value=0.15 Score=48.06 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|.|..|.|||||++.++..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999875
No 394
>PRK05439 pantothenate kinase; Provisional
Probab=94.89 E-value=0.1 Score=53.09 Aligned_cols=27 Identities=37% Similarity=0.299 Sum_probs=23.1
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 34 QKGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 34 ~~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+..-+|+|.|.+|+||||+|+.+...
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~ 109 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQAL 109 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345679999999999999999888764
No 395
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.89 E-value=0.031 Score=48.51 Aligned_cols=73 Identities=16% Similarity=0.179 Sum_probs=43.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCce
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKK 117 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 117 (796)
+-|.|.|-+|+||||+|.+++.. ..| -|+++++-.....+....-+ ......-+.+.+++.+...+.+..
T Consensus 8 PNILvtGTPG~GKstl~~~lae~----~~~---~~i~isd~vkEn~l~~gyDE---~y~c~i~DEdkv~D~Le~~m~~Gg 77 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEK----TGL---EYIEISDLVKENNLYEGYDE---EYKCHILDEDKVLDELEPLMIEGG 77 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHH----hCC---ceEehhhHHhhhcchhcccc---cccCccccHHHHHHHHHHHHhcCC
Confidence 45889999999999999999854 222 36666653322222211111 112334566677777777776655
Q ss_pred EEE
Q 003773 118 FFL 120 (796)
Q Consensus 118 ~Ll 120 (796)
+++
T Consensus 78 ~IV 80 (176)
T KOG3347|consen 78 NIV 80 (176)
T ss_pred cEE
Confidence 443
No 396
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.88 E-value=0.052 Score=54.61 Aligned_cols=52 Identities=17% Similarity=0.195 Sum_probs=39.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHH
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILE 90 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 90 (796)
+.-+++.|+|.+|+|||+++.++... .......++||+... +...+.+...+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~--~~~~ge~vlyvs~~e--~~~~l~~~~~~ 72 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYE--GAREGEPVLYVSTEE--SPEELLENARS 72 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHH--HHhcCCcEEEEEecC--CHHHHHHHHHH
Confidence 45579999999999999999888876 445578899998876 34455554444
No 397
>PRK05973 replicative DNA helicase; Provisional
Probab=94.86 E-value=0.11 Score=50.69 Aligned_cols=47 Identities=15% Similarity=0.039 Sum_probs=31.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKA 87 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 87 (796)
-.++.|.|.+|+|||++|.+++.... ..=..+++++.... ..++...
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a--~~Ge~vlyfSlEes--~~~i~~R 110 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAM--KSGRTGVFFTLEYT--EQDVRDR 110 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEEeCC--HHHHHHH
Confidence 35889999999999999988776522 22244777766553 3444444
No 398
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.85 E-value=0.037 Score=55.36 Aligned_cols=54 Identities=22% Similarity=0.211 Sum_probs=40.4
Q ss_pred ccCcccccHHHHH------HHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCC
Q 003773 13 LKLQIEGLDDDNT------LALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFD 68 (796)
Q Consensus 13 ~~~~~vGr~~~~~------~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~ 68 (796)
..+-|||..+..+ +++..- .-.-+.|.|.|++|.|||+||-.+++..-..-+|-
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~g--k~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQG--KMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhC--cccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 4566999999888 344321 12347899999999999999999998855556663
No 399
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.84 E-value=0.024 Score=61.46 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=36.5
Q ss_pred CcccccHHHHHHHhccc-----CCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 15 LQIEGLDDDNTLALASS-----EQQKGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~~-----~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|.++.++.++..+ .....-+++.++|++|+|||+||+.+++-
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 36899999999665432 12345579999999999999999998875
No 400
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.83 E-value=0.066 Score=51.27 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=23.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
+...+|+|.|++|+||||+|+.+...
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45579999999999999999999875
No 401
>PRK03839 putative kinase; Provisional
Probab=94.83 E-value=0.02 Score=54.03 Aligned_cols=22 Identities=41% Similarity=0.674 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.|.|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999987
No 402
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=94.80 E-value=0.032 Score=56.97 Aligned_cols=129 Identities=16% Similarity=0.196 Sum_probs=67.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccc--ccC---CeEEEEE---------eC--CcCCHHHHHHHHHHHhcc-------
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVK--RKF---DIVIWVC---------VS--DAFEEIRIAKAILEVLDK------- 94 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~--~~f---~~~~wv~---------~~--~~~~~~~~~~~i~~~l~~------- 94 (796)
-+++|+|.+|.||||+.+++....... ..| .+.+-+. .. ..++-..+++++.+..+.
T Consensus 410 dvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveI 489 (593)
T COG2401 410 DVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEI 489 (593)
T ss_pred CeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCchhHHHHH
Confidence 488999999999999999887652111 111 1122211 11 112222344444433322
Q ss_pred ------CC--------CCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhh--HhhhccCC--CCCcEEEEEecch
Q 003773 95 ------SA--------SSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDP--FFSCLKNG--HHESKILITTRDR 156 (796)
Q Consensus 95 ------~~--------~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~--l~~~~~~~--~~gs~iiiTsr~~ 156 (796)
.+ ....+.+.-...+...+..+.-+++.|.+... .+.... +...+... .-|..+++.|+.+
T Consensus 490 LnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~Ah-LD~~TA~rVArkiselaRe~giTlivvThrp 568 (593)
T COG2401 490 LNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAH-LDELTAVRVARKISELAREAGITLIVVTHRP 568 (593)
T ss_pred HHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhh-cCHHHHHHHHHHHHHHHHHhCCeEEEEecCH
Confidence 11 11222333345566777888889999988432 122211 22222221 2466677777778
Q ss_pred hhhhccCccce
Q 003773 157 SVALQMGSIDI 167 (796)
Q Consensus 157 ~~~~~~~~~~~ 167 (796)
++.+++..+..
T Consensus 569 Ev~~AL~PD~l 579 (593)
T COG2401 569 EVGNALRPDTL 579 (593)
T ss_pred HHHhccCCcee
Confidence 88777755443
No 403
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.75 Score=43.78 Aligned_cols=140 Identities=16% Similarity=0.088 Sum_probs=72.8
Q ss_pred HHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHH
Q 003773 26 LALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSL 105 (796)
Q Consensus 26 ~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 105 (796)
+|.++++- .+.+-|.++|++|.|||-||++++++ ....|+.++. .+-+++-|-+- ..-..++
T Consensus 171 ELF~aLGI-aQPKGvlLygppgtGktLlaraVahh-------t~c~firvsg---selvqk~igeg-------srmvrel 232 (404)
T KOG0728|consen 171 ELFEALGI-AQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSG---SELVQKYIGEG-------SRMVREL 232 (404)
T ss_pred HHHHhcCC-CCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEech---HHHHHHHhhhh-------HHHHHHH
Confidence 34444432 34567889999999999999999987 2233455543 22222222110 0001111
Q ss_pred HHHHHHHhCCceEEEEEeCCCCCC----------ccCh----hhHhhhccCC--CCCcEEEEEecchhhhh-----ccCc
Q 003773 106 MQQTQESIRGKKFFLVLDDVWDGD----------FKKW----DPFFSCLKNG--HHESKILITTRDRSVAL-----QMGS 164 (796)
Q Consensus 106 ~~~~~~~l~~~~~LlvlDd~~~~~----------~~~~----~~l~~~~~~~--~~gs~iiiTsr~~~~~~-----~~~~ 164 (796)
.-..+ ..-+.+|+.|.+++.. ..+. -.+...+..+ ...-|||.+|..-++.+ .-..
T Consensus 233 fvmar---ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgri 309 (404)
T KOG0728|consen 233 FVMAR---EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRI 309 (404)
T ss_pred HHHHH---hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcc
Confidence 11111 2356788888875411 0111 1122222221 24567887776543332 2233
Q ss_pred cceEEccCCChHhHHHHHHHHh
Q 003773 165 IDIISVKELGEEECWSLFKQVA 186 (796)
Q Consensus 165 ~~~~~l~~l~~~e~~~lf~~~~ 186 (796)
+..++..+-+.+.-.++++-+.
T Consensus 310 drkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 310 DRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cccccCCCCCHHHHHHHHHHhh
Confidence 5678888888777777776543
No 404
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.78 E-value=0.21 Score=52.98 Aligned_cols=85 Identities=18% Similarity=0.260 Sum_probs=49.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcC-CHHHHHHHHHHHhccC-------CCCCccH-----H
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAF-EEIRIAKAILEVLDKS-------ASSLGEF-----Q 103 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~-----~ 103 (796)
-+.++|.|..|+|||||++.++.. ...+.++.+-+++.. ...++.+.++..-+.. ....... .
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~----~~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRG----TTADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccC----CCCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 368999999999999999998865 223566666666543 2333444433321110 1111111 1
Q ss_pred HHHHHHHHHh--CCceEEEEEeCC
Q 003773 104 SLMQQTQESI--RGKKFFLVLDDV 125 (796)
Q Consensus 104 ~~~~~~~~~l--~~~~~LlvlDd~ 125 (796)
...-.+.+++ +++++|+++||+
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCh
Confidence 1222244444 689999999999
No 405
>PRK07667 uridine kinase; Provisional
Probab=94.77 E-value=0.028 Score=53.54 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=23.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
+...+|+|.|.+|+||||+|+.+...
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999999998876
No 406
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.76 E-value=0.06 Score=53.20 Aligned_cols=85 Identities=19% Similarity=0.202 Sum_probs=46.9
Q ss_pred cEEEEEEcCCCCcHHHHH-HHHHcCccccccCCeE-EEEEeCCcC-CHHHHHHHHHHHhccC------CCCCc-cHHH--
Q 003773 37 LRIISLFGLGGIGKTTLA-QLAFNNEGVKRKFDIV-IWVCVSDAF-EEIRIAKAILEVLDKS------ASSLG-EFQS-- 104 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa-~~~~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~------~~~~~-~~~~-- 104 (796)
-+.++|.|.+|+|||+|| ..+.+. ..-+.+ +++.+++.. +..++.+.+.+.-... ..... ...+
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~----~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ----KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh----cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 368899999999999996 666554 223444 566666543 3445555544321100 01111 1111
Q ss_pred ---HHHHHHHHh--CCceEEEEEeCC
Q 003773 105 ---LMQQTQESI--RGKKFFLVLDDV 125 (796)
Q Consensus 105 ---~~~~~~~~l--~~~~~LlvlDd~ 125 (796)
..-.+.+++ +++.+|+++||+
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcCh
Confidence 112233333 588999999998
No 407
>PRK04040 adenylate kinase; Provisional
Probab=94.75 E-value=0.022 Score=53.69 Aligned_cols=23 Identities=30% Similarity=0.639 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+|+|+|++|+||||+++.+.+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 58999999999999999999876
No 408
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.74 E-value=0.092 Score=55.90 Aligned_cols=86 Identities=22% Similarity=0.204 Sum_probs=47.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhcc-----C-CCCCcc-----HHHH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDK-----S-ASSLGE-----FQSL 105 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-----~-~~~~~~-----~~~~ 105 (796)
-+.++|.|.+|+|||||++.++... .....+++.......+...+.......... - ...... ....
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 3589999999999999999887652 223345554332333444433332222110 0 011111 1112
Q ss_pred HHHHHHHh--CCceEEEEEeCC
Q 003773 106 MQQTQESI--RGKKFFLVLDDV 125 (796)
Q Consensus 106 ~~~~~~~l--~~~~~LlvlDd~ 125 (796)
.-.+.+++ +++.+|+++||+
T Consensus 242 a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 22234444 588999999998
No 409
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.73 E-value=0.22 Score=56.15 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
-..++|+|+.|.|||||++.+..-
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999988764
No 410
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.69 E-value=0.13 Score=47.89 Aligned_cols=119 Identities=13% Similarity=0.046 Sum_probs=62.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCC---cCCHHHHHHHHH--HH--hccC----C-CCC---c
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSD---AFEEIRIAKAIL--EV--LDKS----A-SSL---G 100 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~--~~--l~~~----~-~~~---~ 100 (796)
....|.|+|-.|-||||.|..++-+. ..+=-.|..+-+-+ .......++.+- .. .+.. . ... .
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra--~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRA--VGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHH--HHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 34688999999999999997766552 22212233333332 223333333211 00 0000 0 000 1
Q ss_pred cHHHHHHHHHHHhCCce-EEEEEeCCCC---CCccChhhHhhhccCCCCCcEEEEEecch
Q 003773 101 EFQSLMQQTQESIRGKK-FFLVLDDVWD---GDFKKWDPFFSCLKNGHHESKILITTRDR 156 (796)
Q Consensus 101 ~~~~~~~~~~~~l~~~~-~LlvlDd~~~---~~~~~~~~l~~~~~~~~~gs~iiiTsr~~ 156 (796)
...+..+..++.+...+ =++|||.+-. ...-..+.+...+.....+..||+|-|+.
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 12223344445554444 5999999822 12234456666666666677899999974
No 411
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.67 E-value=0.12 Score=50.90 Aligned_cols=40 Identities=25% Similarity=0.222 Sum_probs=29.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSD 77 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 77 (796)
.-..+.|.|.+|+|||++|.+++... ...-+.++|++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~--~~~g~~~~~is~e~ 58 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG--LRDGDPVIYVTTEE 58 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH--HhcCCeEEEEEccC
Confidence 34789999999999999998766541 12235688887644
No 412
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.67 E-value=0.029 Score=53.37 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
+.++|+|.|++|+||||+|+.++..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998864
No 413
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.66 E-value=0.23 Score=56.88 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..|+|+|..|+|||||++.+..-
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999988763
No 414
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.63 E-value=0.15 Score=58.07 Aligned_cols=87 Identities=16% Similarity=0.214 Sum_probs=50.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCC--HHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFE--EIRIAKAILEVLDKSASSLGEFQSLMQQTQESIR 114 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 114 (796)
.++++++|+.|+||||.+.+++........-..+..++... +. ..+-++...+.++.......+.++..+.+. .+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt-~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~-~~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDS-FRIGALEQLRIYGRILGVPVHAVKDAADLRFALA-ALG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcc-cchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH-Hhc
Confidence 47999999999999999988887632222223455555432 22 334455555666544433344455444443 344
Q ss_pred CceEEEEEeCCC
Q 003773 115 GKKFFLVLDDVW 126 (796)
Q Consensus 115 ~~~~LlvlDd~~ 126 (796)
++ =+|++|-.-
T Consensus 263 ~~-D~VLIDTAG 273 (767)
T PRK14723 263 DK-HLVLIDTVG 273 (767)
T ss_pred CC-CEEEEeCCC
Confidence 44 367777763
No 415
>PHA00729 NTP-binding motif containing protein
Probab=94.63 E-value=0.031 Score=53.52 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
+...|.|+|.+|+||||||..++++
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4457889999999999999999876
No 416
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.63 E-value=0.16 Score=48.43 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
-.+++|.|+.|.|||||++.++.-
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999998875
No 417
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.63 E-value=0.11 Score=49.86 Aligned_cols=84 Identities=25% Similarity=0.336 Sum_probs=49.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCc-CCHHHHHHHHHHHhccC------CCCCcc-HH-----H
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDA-FEEIRIAKAILEVLDKS------ASSLGE-FQ-----S 104 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~------~~~~~~-~~-----~ 104 (796)
+.++|.|.+|+|||+|+..+.+.. .-+.++++.+++. .+..++.+.+...-..+ ...... .. .
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 578899999999999999988762 3345577777754 34445555553321100 011111 11 1
Q ss_pred HHHHHHHHh--CCceEEEEEeCC
Q 003773 105 LMQQTQESI--RGKKFFLVLDDV 125 (796)
Q Consensus 105 ~~~~~~~~l--~~~~~LlvlDd~ 125 (796)
..-.+.+++ .++.+|+++||+
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETH
T ss_pred cchhhhHHHhhcCCceeehhhhh
Confidence 111122333 699999999998
No 418
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.63 E-value=0.056 Score=57.96 Aligned_cols=88 Identities=17% Similarity=0.129 Sum_probs=53.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcC-CHHHHHHHHHHHhccC------CCCCcc------HH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAF-EEIRIAKAILEVLDKS------ASSLGE------FQ 103 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~~~~~------~~ 103 (796)
-+.++|.|.+|+|||||+.++++.... .+-+.++++-+++.. ...++...+...-... ...... ..
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 368999999999999999888876332 245777777776543 3344555444321110 011111 11
Q ss_pred HHHHHHHHHh---CCceEEEEEeCC
Q 003773 104 SLMQQTQESI---RGKKFFLVLDDV 125 (796)
Q Consensus 104 ~~~~~~~~~l---~~~~~LlvlDd~ 125 (796)
...-.+.+++ .++++|+++|++
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccc
Confidence 2223345555 389999999999
No 419
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.61 E-value=0.16 Score=49.80 Aligned_cols=48 Identities=19% Similarity=0.121 Sum_probs=31.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAI 88 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 88 (796)
-.++.|.|++|+||||+|.+++... .+.. ..+++++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 4599999999999999986665542 1222 3467776433 445555555
No 420
>PRK15453 phosphoribulokinase; Provisional
Probab=94.61 E-value=0.16 Score=50.23 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...+|+|.|.+|+||||+|+++++.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~i 28 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKI 28 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999988864
No 421
>PRK00625 shikimate kinase; Provisional
Probab=94.59 E-value=0.023 Score=52.63 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.|.++|++|+||||+++.++++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999876
No 422
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.59 E-value=0.21 Score=49.52 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
+..|+|++|+|||+||..++-.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999877653
No 423
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.58 E-value=0.041 Score=61.80 Aligned_cols=77 Identities=17% Similarity=0.126 Sum_probs=55.1
Q ss_pred ccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHh
Q 003773 13 LKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVL 92 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 92 (796)
.-++++|.++.++.+.....+. +-+.++|++|+||||+|+.+++.. ....++..+|... ...+...+.+.++..+
T Consensus 29 ~~~~vigq~~a~~~L~~~~~~~---~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 29 LIDQVIGQEHAVEVIKKAAKQR---RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKIRTVPAGK 103 (637)
T ss_pred cHHHcCChHHHHHHHHHHHHhC---CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHHHHHHHhc
Confidence 3456999999988666544322 468899999999999999998763 2334577888765 3346677777777666
Q ss_pred cc
Q 003773 93 DK 94 (796)
Q Consensus 93 ~~ 94 (796)
+.
T Consensus 104 G~ 105 (637)
T PRK13765 104 GK 105 (637)
T ss_pred CH
Confidence 54
No 424
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.58 E-value=0.071 Score=55.81 Aligned_cols=47 Identities=21% Similarity=0.235 Sum_probs=34.4
Q ss_pred cCcccccHHHHHHHhcccC-------------CCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 14 KLQIEGLDDDNTLALASSE-------------QQKGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 14 ~~~~vGr~~~~~~l~~~~~-------------~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...+||.++.+..+.-+.. ..-..+-|.++|++|+|||++|+.++..
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999984432211 1112367889999999999999999887
No 425
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.58 E-value=0.049 Score=51.04 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998876
No 426
>PRK04328 hypothetical protein; Provisional
Probab=94.57 E-value=0.097 Score=52.10 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=29.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSD 77 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 77 (796)
.-.++.|.|.+|+|||++|.++... ....-..++|++...
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee 61 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEE 61 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeC
Confidence 3468999999999999999876654 222335578887765
No 427
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.55 E-value=0.2 Score=49.99 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
-.+++|.|+.|.|||||++.++..
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999875
No 428
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.53 E-value=0.036 Score=53.94 Aligned_cols=21 Identities=43% Similarity=0.718 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003773 40 ISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 40 v~I~G~~GiGKTtLa~~~~~~ 60 (796)
|.|.|++|+||||+|+.+++.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999998875
No 429
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.51 E-value=0.27 Score=48.00 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
-.+++|.|+.|.|||||++.++..
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 369999999999999999998875
No 430
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.50 E-value=0.13 Score=55.07 Aligned_cols=90 Identities=18% Similarity=0.184 Sum_probs=51.1
Q ss_pred cEEEEEEcCCCCcHHHHH-HHHHcCcccc-----ccCCeEEEEEeCCcCCHHHHHHHHHHHhcc-C-------CCCCccH
Q 003773 37 LRIISLFGLGGIGKTTLA-QLAFNNEGVK-----RKFDIVIWVCVSDAFEEIRIAKAILEVLDK-S-------ASSLGEF 102 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa-~~~~~~~~~~-----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-~-------~~~~~~~ 102 (796)
-+.++|.|..|+|||+|| ..+.+..... +.-+.++++.+++..+...-..+.++.-+. . .......
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 367899999999999997 6667663221 234568888888765432223333332221 0 0011011
Q ss_pred -----HHHHHHHHHHh--CCceEEEEEeCCC
Q 003773 103 -----QSLMQQTQESI--RGKKFFLVLDDVW 126 (796)
Q Consensus 103 -----~~~~~~~~~~l--~~~~~LlvlDd~~ 126 (796)
....-.+.+++ +++.+|+|+||+.
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 11122233444 5889999999993
No 431
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.49 E-value=0.29 Score=46.97 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
-.+++|.|..|+|||||++.++..
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 369999999999999999988875
No 432
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.49 E-value=0.15 Score=54.33 Aligned_cols=86 Identities=19% Similarity=0.216 Sum_probs=49.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcC-CHHHHHHHHHHHhccC-------CCCCccH-----
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAF-EEIRIAKAILEVLDKS-------ASSLGEF----- 102 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~----- 102 (796)
.-+.++|.|..|+|||||++.+++.. ..+.++++-+++.. ...++.+..+..-+.. .......
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 34688999999999999999998762 22455556565543 2334433333221110 1111111
Q ss_pred HHHHHHHHHHh--CCceEEEEEeCC
Q 003773 103 QSLMQQTQESI--RGKKFFLVLDDV 125 (796)
Q Consensus 103 ~~~~~~~~~~l--~~~~~LlvlDd~ 125 (796)
....-.+.+++ +++.+|+++||+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 11222344444 589999999999
No 433
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.47 E-value=0.17 Score=48.57 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=31.7
Q ss_pred HHHHHhCCceEEEEEeCCCCC-CccChh-hHhhhccCCC-C-CcEEEEEecchhhhh
Q 003773 108 QTQESIRGKKFFLVLDDVWDG-DFKKWD-PFFSCLKNGH-H-ESKILITTRDRSVAL 160 (796)
Q Consensus 108 ~~~~~l~~~~~LlvlDd~~~~-~~~~~~-~l~~~~~~~~-~-gs~iiiTsr~~~~~~ 160 (796)
.+.+.+..++-++++|+.... +..... .+...+.... . |..||++|.+.+...
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~ 187 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVD 187 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh
Confidence 345566788899999998542 222233 3444443322 2 556888888876654
No 434
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.47 E-value=0.01 Score=66.32 Aligned_cols=96 Identities=21% Similarity=0.119 Sum_probs=51.9
Q ss_pred HHhhhcCcccceeeeccc-ccCCCcccccccccccccCccccceEecCCCC-ccc--cchhhhccCCccEeecccccccc
Q 003773 419 VELFSKVACLRALVIRQW-FVPLDDQNFIREIPENIGKLIHLKYLNLSELC-IER--LPETLCELYNLQKLAVRWCTNLR 494 (796)
Q Consensus 419 ~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~-i~~--lp~~i~~l~~L~~L~l~~~~~~~ 494 (796)
..+...++.|+.|+++++ ..... .-...+.....+.+|+.|+++.+. ++. +..-...+++|++|.+.+|..+.
T Consensus 207 ~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt 283 (482)
T KOG1947|consen 207 DALALKCPNLEELDLSGCCLLITL---SPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLT 283 (482)
T ss_pred HHHHhhCchhheecccCccccccc---chhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccc
Confidence 344567778888887752 10000 000011223346777788887776 442 21112236778888777776432
Q ss_pred --ccchhhccccCCCeeecCCcccc
Q 003773 495 --ELPAGIGKLMNMRSLMNGQTEKL 517 (796)
Q Consensus 495 --~lp~~~~~l~~L~~L~l~~~~~~ 517 (796)
.+-.....+++|++|++++|..+
T Consensus 284 ~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 284 DEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhHHHHHHHhcCcccEEeeecCccc
Confidence 22233445677888888777554
No 435
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.47 E-value=0.15 Score=48.68 Aligned_cols=41 Identities=29% Similarity=0.400 Sum_probs=27.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccC--------CeEEEEEeCCc
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKF--------DIVIWVCVSDA 78 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f--------~~~~wv~~~~~ 78 (796)
.++.|.|++|+|||+++..++........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 488899999999999998777653322222 35888877664
No 436
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.45 E-value=0.063 Score=49.62 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003773 40 ISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 40 v~I~G~~GiGKTtLa~~~~~~ 60 (796)
|+|.|++|+||||+|+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999998876
No 437
>PF13245 AAA_19: Part of AAA domain
Probab=94.44 E-value=0.061 Score=41.91 Aligned_cols=24 Identities=25% Similarity=0.174 Sum_probs=17.5
Q ss_pred cEEEEEEcCCCCcHHHHH-HHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLA-QLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa-~~~~~~ 60 (796)
.+++.|.|++|.|||+++ ..+...
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 357888999999999555 444443
No 438
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.43 E-value=0.031 Score=52.63 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
++++|.|++|+||||+++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998775
No 439
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.42 E-value=0.15 Score=55.05 Aligned_cols=88 Identities=15% Similarity=0.172 Sum_probs=46.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCc-CCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDA-FEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRG 115 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 115 (796)
.++++++|+.|+||||.+.+++.....+..-..+..++.... ....+-++..++.++.......+..+....+ ..+.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccC
Confidence 479999999999999999888865322222224555554431 1222333444455443322222222222222 23344
Q ss_pred ceEEEEEeCCC
Q 003773 116 KKFFLVLDDVW 126 (796)
Q Consensus 116 ~~~LlvlDd~~ 126 (796)
+ -.+++|-.-
T Consensus 335 ~-d~VLIDTaG 344 (484)
T PRK06995 335 K-HIVLIDTIG 344 (484)
T ss_pred C-CeEEeCCCC
Confidence 4 467777763
No 440
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.40 E-value=0.46 Score=44.48 Aligned_cols=43 Identities=19% Similarity=0.073 Sum_probs=29.4
Q ss_pred CcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 15 LQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.-++|-.+.++.+--. -.+.+|.++.|++|+||||+.+.+-+.
T Consensus 14 ~~yYg~~~aL~~i~l~---i~~~~VTAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 14 NLYYGDKHALKDINLD---IPKNKVTALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred eEEECchhhhccCcee---ccCCceEEEECCCCcCHHHHHHHHHhh
Confidence 3477755555432211 245579999999999999999876553
No 441
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.39 E-value=0.33 Score=48.05 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|.|+.|.|||||++.++.-
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 28 KKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999875
No 442
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.39 E-value=0.027 Score=52.80 Aligned_cols=22 Identities=41% Similarity=0.513 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
+|+|.|.+|+||||+|+.++..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999876
No 443
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.38 E-value=0.03 Score=52.44 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...|.|+|++|+||||+|+++++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999886
No 444
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.38 E-value=0.087 Score=48.59 Aligned_cols=23 Identities=39% Similarity=0.462 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
+.|.+.|.+|+||||+|+++++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~ 24 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKE 24 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHH
Confidence 45779999999999999999886
No 445
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.38 E-value=0.18 Score=49.95 Aligned_cols=89 Identities=17% Similarity=0.210 Sum_probs=53.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccc--cccCCeEEEEEeCCcC-CHHHHHHHHHHHhccC-------CCCCcc-----
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGV--KRKFDIVIWVCVSDAF-EEIRIAKAILEVLDKS-------ASSLGE----- 101 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~--~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~----- 101 (796)
-+.++|.|-+|+|||+|+.++.++... +.+-+.++++-+++.. +..++.+.+.+.-... ......
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 367899999999999999888876321 1234678888887653 3344555444321110 011111
Q ss_pred HHHHHHHHHHHh---CCceEEEEEeCC
Q 003773 102 FQSLMQQTQESI---RGKKFFLVLDDV 125 (796)
Q Consensus 102 ~~~~~~~~~~~l---~~~~~LlvlDd~ 125 (796)
.....-.+.+++ .++++|+++||+
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 111222344555 378999999998
No 446
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.37 E-value=0.044 Score=51.52 Aligned_cols=44 Identities=23% Similarity=0.170 Sum_probs=32.0
Q ss_pred cCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 14 KLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 14 ~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
-.+++|.+..+..+.-+..+ ..=+.+.|++|+|||++|+.+..-
T Consensus 2 f~dI~GQe~aKrAL~iAAaG---~h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG---GHHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC---C--EEEES-CCCTHHHHHHHHHHC
T ss_pred hhhhcCcHHHHHHHHHHHcC---CCCeEEECCCCCCHHHHHHHHHHh
Confidence 35789999999866544432 257889999999999999988763
No 447
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.36 E-value=0.027 Score=54.08 Aligned_cols=22 Identities=41% Similarity=0.546 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
+|+|.|.+|+||||+|+.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988765
No 448
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.35 E-value=0.68 Score=44.57 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
-.+++|.|+.|.|||||++.++.-
T Consensus 31 G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 358999999999999999998875
No 449
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.34 E-value=0.028 Score=29.29 Aligned_cols=16 Identities=38% Similarity=0.588 Sum_probs=7.8
Q ss_pred ccceEecCCCCccccc
Q 003773 458 HLKYLNLSELCIERLP 473 (796)
Q Consensus 458 ~L~~L~l~~~~i~~lp 473 (796)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5666666666666554
No 450
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.34 E-value=0.3 Score=50.27 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
-.+++|.|+.|.|||||++.+...
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999875
No 451
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.32 E-value=0.031 Score=52.36 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
++|.+.|++|+||||+|+++...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999876
No 452
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=94.31 E-value=0.16 Score=51.82 Aligned_cols=48 Identities=25% Similarity=0.217 Sum_probs=35.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcC-CHHHHHHHH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAF-EEIRIAKAI 88 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i 88 (796)
-+.++|.|..|+|||+|+.++++. .+-+.++++-+++.. .+.++..++
T Consensus 157 Gqr~~I~G~~G~GKT~L~~~Iak~----~~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 157 GGTAAIPGPFGCGKTVIQQSLSKY----SNSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CCEEEEECCCCCChHHHHHHHHhC----CCCCEEEEEEeCCChHHHHHHHHHH
Confidence 358999999999999999999886 233578888887643 334455444
No 453
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.30 E-value=0.04 Score=52.00 Aligned_cols=38 Identities=34% Similarity=0.396 Sum_probs=29.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVS 76 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 76 (796)
.|++.|+|+.|+|||||++++... ....|..+++.+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~--~~~~~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQE--FPDKFGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHH--STTTEEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh--cccccccceeeccc
Confidence 368999999999999999999876 44566555554433
No 454
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.30 E-value=0.18 Score=53.91 Aligned_cols=88 Identities=22% Similarity=0.184 Sum_probs=52.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcC-CHHHHHHHHHHHhccC-------CCCCccH-----H
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAF-EEIRIAKAILEVLDKS-------ASSLGEF-----Q 103 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~-----~ 103 (796)
-+.++|.|.+|+|||||+.+++....... =+.++++-+++.. ...++.+.+...-... ....... .
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 36899999999999999988766522211 2457777776543 3345555554321110 1111111 1
Q ss_pred HHHHHHHHHh---CCceEEEEEeCC
Q 003773 104 SLMQQTQESI---RGKKFFLVLDDV 125 (796)
Q Consensus 104 ~~~~~~~~~l---~~~~~LlvlDd~ 125 (796)
...-.+.+++ +++++|+++|++
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecch
Confidence 1223355555 689999999999
No 455
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.30 E-value=0.059 Score=51.38 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|+|++|.|||||++.++--
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcc
Confidence 58999999999999999998874
No 456
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.28 E-value=0.19 Score=46.42 Aligned_cols=79 Identities=14% Similarity=0.184 Sum_probs=43.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCC--ce
Q 003773 40 ISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRG--KK 117 (796)
Q Consensus 40 v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~--~~ 117 (796)
+.|.|.+|+|||++|.+++.. ....++++.-...++. +..+.|.+.-....... ...+....+.+.+.. +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w-~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRRPAHW-RTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCc-eEeecHHHHHHHHHhcCCC
Confidence 679999999999999888754 2235777766665544 34444443322222111 111222223333311 23
Q ss_pred EEEEEeCC
Q 003773 118 FFLVLDDV 125 (796)
Q Consensus 118 ~LlvlDd~ 125 (796)
-.+++|.+
T Consensus 75 ~~VLIDcl 82 (169)
T cd00544 75 DVVLIDCL 82 (169)
T ss_pred CEEEEEcH
Confidence 37999987
No 457
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.25 E-value=0.19 Score=54.63 Aligned_cols=81 Identities=20% Similarity=0.235 Sum_probs=46.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCC-----CCccHHHHHHHHHH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSAS-----SLGEFQSLMQQTQE 111 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~ 111 (796)
-.++.|.|.+|+||||++.+++... ...-..++|++.... ..++... ++.++.... ...+.+++.+.+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~--a~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARL--AAAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 4689999999999999998887752 222245788876543 3333222 344443211 11233444333322
Q ss_pred HhCCceEEEEEeCC
Q 003773 112 SIRGKKFFLVLDDV 125 (796)
Q Consensus 112 ~l~~~~~LlvlDd~ 125 (796)
.+.-++|+|.+
T Consensus 155 ---~~~~lVVIDSI 165 (446)
T PRK11823 155 ---EKPDLVVIDSI 165 (446)
T ss_pred ---hCCCEEEEech
Confidence 24457777776
No 458
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.25 E-value=0.027 Score=54.03 Aligned_cols=64 Identities=20% Similarity=0.212 Sum_probs=46.1
Q ss_pred ccCccccceEecCCCCccccchhhhccCCccEeecccc--ccccccchhhccccCCCeeecCCccccc
Q 003773 453 IGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWC--TNLRELPAGIGKLMNMRSLMNGQTEKLK 518 (796)
Q Consensus 453 ~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~--~~~~~lp~~~~~l~~L~~L~l~~~~~~~ 518 (796)
.-....|+.|++.++.++.+- .+..|++|++|.++.| .....++.-..++++|++|++++| .++
T Consensus 39 ~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~ 104 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIK 104 (260)
T ss_pred cccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccc
Confidence 334566777777777666443 2456899999999988 444556666677799999999999 444
No 459
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.23 E-value=0.039 Score=49.54 Aligned_cols=20 Identities=40% Similarity=0.669 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 003773 39 IISLFGLGGIGKTTLAQLAF 58 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~ 58 (796)
.|+|+|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58899999999999999887
No 460
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.23 E-value=0.19 Score=49.16 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
-.+++|.|..|.|||||++.++..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 26 NSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998875
No 461
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.22 E-value=0.042 Score=50.15 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..+.|.|++|+|||||++++..+
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999999987
No 462
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.20 E-value=0.028 Score=53.19 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
+|.|.|++|+||||+|+.++..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998875
No 463
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.18 E-value=0.032 Score=50.73 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
++.|.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3689999999999999998875
No 464
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=94.17 E-value=0.07 Score=58.90 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=34.1
Q ss_pred CcccccHHHHHHHhcccC-CCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 15 LQIEGLDDDNTLALASSE-QQKGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|....++.+.+... -.....-|.|.|..|+||+.+|+.+++.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHh
Confidence 358999998885554431 1123357889999999999999999875
No 465
>PRK08149 ATP synthase SpaL; Validated
Probab=94.17 E-value=0.17 Score=53.70 Aligned_cols=85 Identities=16% Similarity=0.307 Sum_probs=49.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCc-CCHHHHHHHHHHHhccC-------CCCCcc-----HH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDA-FEEIRIAKAILEVLDKS-------ASSLGE-----FQ 103 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~-----~~ 103 (796)
-+.++|.|.+|+|||||++.++... .-+.++...+... .+..++.....+..... ...... ..
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHS----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCC----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 3689999999999999999988752 2234334444432 34445555554432211 111111 11
Q ss_pred HHHHHHHHHh--CCceEEEEEeCC
Q 003773 104 SLMQQTQESI--RGKKFFLVLDDV 125 (796)
Q Consensus 104 ~~~~~~~~~l--~~~~~LlvlDd~ 125 (796)
.....+.+++ +++++|+++||+
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccch
Confidence 2222344444 589999999999
No 466
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=94.16 E-value=0.31 Score=48.68 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
-.+++|.|..|.|||||++.++..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 27 GEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 358999999999999999998875
No 467
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.15 E-value=0.04 Score=51.95 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
++|+|+|+.|+||||+|+.++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 57999999999999999999885
No 468
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.13 E-value=0.043 Score=54.89 Aligned_cols=23 Identities=39% Similarity=0.307 Sum_probs=18.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
+.|.|+|.+|+||||+|+++...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46889999999999999999886
No 469
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.13 E-value=0.055 Score=49.75 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=22.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNE 61 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 61 (796)
..++++|+|..|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45799999999999999999988763
No 470
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.12 E-value=0.37 Score=47.69 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
-.+++|.|+.|.|||||++.++..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 28 GEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998864
No 471
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.11 E-value=0.046 Score=56.53 Aligned_cols=47 Identities=15% Similarity=0.134 Sum_probs=37.4
Q ss_pred ccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 13 LKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.-..+||.|+.+..|+.+.. ++...-|.|.|..|+||||+|+.+++-
T Consensus 15 pf~~ivGq~~~k~al~~~~~-~p~~~~vli~G~~GtGKs~~ar~~~~~ 61 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVI-DPKIGGVMIMGDRGTGKSTTIRALVDL 61 (350)
T ss_pred CHHHHhChHHHHHHHHHhcc-CCCCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 45679999998887776554 345566779999999999999998764
No 472
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.11 E-value=0.08 Score=45.22 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=33.6
Q ss_pred cCcccccHHHHHHHhcc----c--CCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 14 KLQIEGLDDDNTLALAS----S--EQQKGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 14 ~~~~vGr~~~~~~l~~~----~--~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...++|.+-..+.++.+ . ....+.-|+..+|++|+|||.+++.+++.
T Consensus 24 ~~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 24 QRNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 34577777776643333 2 23455678999999999999998888776
No 473
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.11 E-value=0.041 Score=48.92 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003773 40 ISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 40 v~I~G~~GiGKTtLa~~~~~~ 60 (796)
|+|+|+.|+|||||++.++..
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999876
No 474
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.10 E-value=0.14 Score=58.59 Aligned_cols=84 Identities=21% Similarity=0.241 Sum_probs=54.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCC-----CCccHHHHHHHHH
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSAS-----SLGEFQSLMQQTQ 110 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~ 110 (796)
.-+++-|+|++|+||||||.+++.. ....=..++|++....++.. .++.++.... .....+.....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 4578999999999999999776554 22233558999877766532 5566654321 1223344555555
Q ss_pred HHhC-CceEEEEEeCCC
Q 003773 111 ESIR-GKKFFLVLDDVW 126 (796)
Q Consensus 111 ~~l~-~~~~LlvlDd~~ 126 (796)
..++ ++--+||+|.+.
T Consensus 132 ~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 132 MLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHhhcCCCeEEEEcchh
Confidence 5554 456689999984
No 475
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.10 E-value=0.33 Score=45.83 Aligned_cols=21 Identities=19% Similarity=0.099 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 003773 39 IISLFGLGGIGKTTLAQLAFN 59 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~ 59 (796)
++.|+|+.|.||||+++.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999988873
No 476
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.08 E-value=0.093 Score=60.47 Aligned_cols=131 Identities=19% Similarity=0.105 Sum_probs=68.6
Q ss_pred cCcccccHHHHHHHhcccCC-CCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHh
Q 003773 14 KLQIEGLDDDNTLALASSEQ-QKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVL 92 (796)
Q Consensus 14 ~~~~vGr~~~~~~l~~~~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 92 (796)
-+.++|....++.+.+.... ......|.|+|..|+||+++|+.+.+... ..-...+.|++.... ...+..+++...
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~--r~~~pfv~vnc~~~~-~~~~~~elfg~~ 400 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESE--RAAGPYIAVNCQLYP-DEALAEEFLGSD 400 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCC--ccCCCeEEEECCCCC-hHHHHHHhcCCC
Confidence 45689999888855443211 11223478999999999999999987521 111234455555432 222333332211
Q ss_pred ccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCC-----------CCcEEEEEecc
Q 003773 93 DKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGH-----------HESKILITTRD 155 (796)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~-----------~gs~iiiTsr~ 155 (796)
...... ... .. .-....-.|+||++..........+...+.... ...|||.||..
T Consensus 401 ~~~~~~-~~~----g~---~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 401 RTDSEN-GRL----SK---FELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred CcCccC-CCC----Cc---eeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 100000 000 00 001234468999997765555556666554321 13467776654
No 477
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.08 E-value=0.097 Score=59.09 Aligned_cols=76 Identities=14% Similarity=0.134 Sum_probs=49.3
Q ss_pred cCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhc
Q 003773 14 KLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLD 93 (796)
Q Consensus 14 ~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 93 (796)
.++++|+++.++.+.....+. +-+.++|++|+||||+|+.+++... ...|..++++.-. ..+...+++.++..++
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~---~~~ll~G~pG~GKT~la~~la~~l~-~~~~~~~~~~~n~-~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK---RNVLLIGEPGVGKSMLAKAMAELLP-DEELEDILVYPNP-EDPNMPRIVEVPAGEG 91 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC---CCEEEECCCCCCHHHHHHHHHHHcC-chhheeEEEEeCC-CCCchHHHHHHHHhhc
Confidence 456899999888655544322 3566999999999999999997632 2234444444333 2345566777776665
Q ss_pred c
Q 003773 94 K 94 (796)
Q Consensus 94 ~ 94 (796)
.
T Consensus 92 ~ 92 (608)
T TIGR00764 92 R 92 (608)
T ss_pred h
Confidence 3
No 478
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.04 E-value=0.053 Score=51.07 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..++|.|.|++|+|||||++++..+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999875
No 479
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.02 E-value=0.052 Score=45.19 Aligned_cols=22 Identities=36% Similarity=0.314 Sum_probs=19.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAF 58 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~ 58 (796)
-..++|.|++|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3689999999999999999876
No 480
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.01 E-value=0.36 Score=51.42 Aligned_cols=86 Identities=19% Similarity=0.256 Sum_probs=50.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcC-CHHHHHHHHHHHhccC-------CCCCccHH----
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAF-EEIRIAKAILEVLDKS-------ASSLGEFQ---- 103 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 103 (796)
.-+.++|.|..|+|||||++.+++.. .-+.++++-+++.. ...++.+..+..-+.. ........
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSA----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCC----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 34689999999999999999999862 23567777776643 3333333322211100 11111111
Q ss_pred -HHHHHHHHHh--CCceEEEEEeCC
Q 003773 104 -SLMQQTQESI--RGKKFFLVLDDV 125 (796)
Q Consensus 104 -~~~~~~~~~l--~~~~~LlvlDd~ 125 (796)
...-.+.+++ .++++|+++|++
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~Dsl 261 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSV 261 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 1112244444 589999999999
No 481
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.01 E-value=0.066 Score=47.66 Aligned_cols=39 Identities=21% Similarity=0.349 Sum_probs=27.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSD 77 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 77 (796)
++|.|+|..|+|||||++.+.+... +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~-~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK-RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH-HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh-HcCCceEEEEEccC
Confidence 4899999999999999999998742 24555555665554
No 482
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.01 E-value=0.19 Score=51.66 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNE 61 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 61 (796)
...+++++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999998888763
No 483
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.01 E-value=0.25 Score=46.61 Aligned_cols=25 Identities=36% Similarity=0.388 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...++.|.|.+|+||||+|+.+...
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~ 41 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKK 41 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4469999999999999999998876
No 484
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.00 E-value=0.14 Score=57.53 Aligned_cols=117 Identities=14% Similarity=0.092 Sum_probs=58.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccc-ccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCC---CccHHHHHHHHHHH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVK-RKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASS---LGEFQSLMQQTQES 112 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~~ 112 (796)
.++..|.|.+|+||||+++.+....... ..-...+.+......-...+.+.+...+..-... ..........+.+.
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrl 246 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRL 246 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHH
Confidence 3689999999999999998877652111 1112345555544433444444443322111000 00000112233333
Q ss_pred hCC------------ce---EEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecch
Q 003773 113 IRG------------KK---FFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDR 156 (796)
Q Consensus 113 l~~------------~~---~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~ 156 (796)
++- .+ -++|+|.+.-.+...+..+...++ +++|+|+.--..
T Consensus 247 Lg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~~ 302 (615)
T PRK10875 247 LGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDRD 302 (615)
T ss_pred hCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecchh
Confidence 321 11 288999984333333444444443 567887765443
No 485
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.99 E-value=0.04 Score=50.83 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCc
Q 003773 40 ISLFGLGGIGKTTLAQLAFNNE 61 (796)
Q Consensus 40 v~I~G~~GiGKTtLa~~~~~~~ 61 (796)
|.|+|.+|+||||+++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6799999999999999988763
No 486
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.98 E-value=0.088 Score=49.95 Aligned_cols=45 Identities=20% Similarity=0.155 Sum_probs=30.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHH
Q 003773 39 IISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKA 87 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 87 (796)
++.|.|++|+|||++|.+++.... +.=..++|++... +..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~--~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL--ARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCC--CHHHHHHH
Confidence 367999999999999988766521 2224577887654 34444433
No 487
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.95 E-value=0.051 Score=51.41 Aligned_cols=31 Identities=35% Similarity=0.462 Sum_probs=25.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCccccccC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKF 67 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f 67 (796)
+..+-|.++|++|.|||.||++++++ ....|
T Consensus 187 dpprgvllygppg~gktml~kava~~--t~a~f 217 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANH--TTAAF 217 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhc--cchhe
Confidence 34577889999999999999999998 44454
No 488
>PRK05922 type III secretion system ATPase; Validated
Probab=93.92 E-value=0.22 Score=53.01 Aligned_cols=85 Identities=16% Similarity=0.185 Sum_probs=48.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCc-CCHHHHHHHHHHHhccCC------CCCc-c-----HH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDA-FEEIRIAKAILEVLDKSA------SSLG-E-----FQ 103 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~------~~~~-~-----~~ 103 (796)
-+.++|.|..|+|||||++.+.... ..+....+.++.. .+....+.+......... .... . ..
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 3578999999999999999998762 2233333334432 233344444433322110 1111 1 11
Q ss_pred HHHHHHHHHh--CCceEEEEEeCC
Q 003773 104 SLMQQTQESI--RGKKFFLVLDDV 125 (796)
Q Consensus 104 ~~~~~~~~~l--~~~~~LlvlDd~ 125 (796)
...-.+.+++ +++++|+++||+
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1222344555 589999999999
No 489
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.91 E-value=0.24 Score=52.72 Aligned_cols=86 Identities=21% Similarity=0.208 Sum_probs=46.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccC-------CCCCccH-----HH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKS-------ASSLGEF-----QS 104 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~~-----~~ 104 (796)
-+.++|.|..|+|||||++.++.... ....++...........++.+..+..-+.. ....... ..
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 36899999999999999998887622 222333322222233344444333221110 1111111 11
Q ss_pred HHHHHHHHh--CCceEEEEEeCC
Q 003773 105 LMQQTQESI--RGKKFFLVLDDV 125 (796)
Q Consensus 105 ~~~~~~~~l--~~~~~LlvlDd~ 125 (796)
..-.+.+++ +++++|+++||+
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 222344555 588999999998
No 490
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=0.36 Score=53.64 Aligned_cols=152 Identities=13% Similarity=0.079 Sum_probs=0.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceEE
Q 003773 40 ISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKFF 119 (796)
Q Consensus 40 v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~L 119 (796)
|.+||++|.|||-+|++|+.+ ++-+|=...--+-+-...|.+ .+...+...+.=...++.
T Consensus 708 ILLYGPPGTGKTLlAKAVATE--------------csL~FlSVKGPELLNMYVGqS------E~NVR~VFerAR~A~PCV 767 (953)
T KOG0736|consen 708 ILLYGPPGTGKTLLAKAVATE--------------CSLNFLSVKGPELLNMYVGQS------EENVREVFERARSAAPCV 767 (953)
T ss_pred eEEECCCCCchHHHHHHHHhh--------------ceeeEEeecCHHHHHHHhcch------HHHHHHHHHHhhccCCeE
Q ss_pred EEEeCCCCCC-----------------ccChhhHhhhccCCCCCcEEEEEecchhhhhcc-----CccceEEccCCChHh
Q 003773 120 LVLDDVWDGD-----------------FKKWDPFFSCLKNGHHESKILITTRDRSVALQM-----GSIDIISVKELGEEE 177 (796)
Q Consensus 120 lvlDd~~~~~-----------------~~~~~~l~~~~~~~~~gs~iiiTsr~~~~~~~~-----~~~~~~~l~~l~~~e 177 (796)
|+||.++... ..-++++-..-.....+.-||=+|..+++.+.. ..++-+.+++=..++
T Consensus 768 IFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~e 847 (953)
T KOG0736|consen 768 IFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAE 847 (953)
T ss_pred EEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHH
Q ss_pred HHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCC
Q 003773 178 CWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKG 211 (796)
Q Consensus 178 ~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 211 (796)
+..-.-+...+.-...+.-++.++|+..--..-|
T Consensus 848 sk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TG 881 (953)
T KOG0736|consen 848 SKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTG 881 (953)
T ss_pred HHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCch
No 491
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.90 E-value=0.31 Score=51.92 Aligned_cols=86 Identities=20% Similarity=0.276 Sum_probs=48.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCc-CCHHHHHHHHHHHhcc-------CCCCCccHHH---
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDA-FEEIRIAKAILEVLDK-------SASSLGEFQS--- 104 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~-------~~~~~~~~~~--- 104 (796)
.-+.++|.|..|+|||||++.+.... +.+..+++.++.. ....++..+....-.. ..........
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 34689999999999999999888752 3344455545443 3344444443321100 0011111111
Q ss_pred --HHHHHHHHh--CCceEEEEEeCC
Q 003773 105 --LMQQTQESI--RGKKFFLVLDDV 125 (796)
Q Consensus 105 --~~~~~~~~l--~~~~~LlvlDd~ 125 (796)
..-.+.+++ +++++|+++||+
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 122244444 588999999999
No 492
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.89 E-value=0.052 Score=48.24 Aligned_cols=24 Identities=29% Similarity=0.675 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.++++|+|.+|+||||+.+.+...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 579999999999999999887765
No 493
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.89 E-value=0.18 Score=49.56 Aligned_cols=77 Identities=19% Similarity=0.123 Sum_probs=42.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCc--CCHHHHHHHHHHHh----ccCC--CCCccHHHHHHHHH
Q 003773 39 IISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDA--FEEIRIAKAILEVL----DKSA--SSLGEFQSLMQQTQ 110 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l----~~~~--~~~~~~~~~~~~~~ 110 (796)
+|+|.|.+|+||||+|+++.+..+..+ ..+..++...- .+.....+.+.... .-+. +...+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 589999999999999998887532111 12333433221 22222222222221 1122 45667777777777
Q ss_pred HHhCCce
Q 003773 111 ESIRGKK 117 (796)
Q Consensus 111 ~~l~~~~ 117 (796)
.+..++.
T Consensus 79 ~L~~g~~ 85 (277)
T cd02029 79 TYGETGR 85 (277)
T ss_pred HHHcCCC
Confidence 7766553
No 494
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.87 E-value=0.053 Score=55.26 Aligned_cols=52 Identities=23% Similarity=0.226 Sum_probs=34.2
Q ss_pred cCcccccHHHHH------HHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccC
Q 003773 14 KLQIEGLDDDNT------LALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKF 67 (796)
Q Consensus 14 ~~~~vGr~~~~~------~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f 67 (796)
...+||..+..+ .++..- .-.-+.|.|.|++|.|||+||.++++.....-.|
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~--K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEG--KIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT----TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred cccccChHHHHHHHHHHHHHHhcc--cccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 456999999988 233221 1134899999999999999999999874433444
No 495
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.87 E-value=0.27 Score=52.37 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...+|.++|+.|+||||+|..++..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999887765
No 496
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.85 E-value=0.062 Score=51.74 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...+.|+|+|++|+|||||++.+.+.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45678999999999999999998754
No 497
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.84 E-value=0.09 Score=56.90 Aligned_cols=89 Identities=17% Similarity=0.105 Sum_probs=47.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeE-EEEEeCCcC-CHHHHHHHHHHHhccCCC-CCc----cHHHHHHH
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIV-IWVCVSDAF-EEIRIAKAILEVLDKSAS-SLG----EFQSLMQQ 108 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~~-~~~----~~~~~~~~ 108 (796)
.-+..+|+|++|+|||||++.+++.... .+-+.. +.+-+.+.. .+..+.+.+-..+-.... ... ......-.
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~ 493 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIE 493 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHH
Confidence 3367889999999999999999986321 223333 334444432 222222222111111111 111 11222233
Q ss_pred HHHHh--CCceEEEEEeCC
Q 003773 109 TQESI--RGKKFFLVLDDV 125 (796)
Q Consensus 109 ~~~~l--~~~~~LlvlDd~ 125 (796)
+.+++ .++.+||++|++
T Consensus 494 ~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 494 RAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHcCCCEEEEEeCc
Confidence 44444 689999999998
No 498
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.84 E-value=0.16 Score=52.39 Aligned_cols=36 Identities=28% Similarity=0.274 Sum_probs=24.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeC
Q 003773 40 ISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVS 76 (796)
Q Consensus 40 v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 76 (796)
+++.|++|+||||+++.+.+.......+ .+.+++..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~-~v~~~~~D 37 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGW-AVAVITYD 37 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCC-eEEEEccc
Confidence 5789999999999999998764322222 24444433
No 499
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.82 E-value=0.19 Score=53.58 Aligned_cols=89 Identities=21% Similarity=0.165 Sum_probs=50.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccC-------CCCCc-----cHH
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKS-------ASSLG-----EFQ 103 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~-----~~~ 103 (796)
.-+.++|.|..|+|||||++.++.... ....++...-....+..++.+..+..-+.. ..... ...
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAK---ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCC---CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 346889999999999999999887622 222344332223345555555444432211 01111 111
Q ss_pred HHHHHHHHHh--CCceEEEEEeCCCC
Q 003773 104 SLMQQTQESI--RGKKFFLVLDDVWD 127 (796)
Q Consensus 104 ~~~~~~~~~l--~~~~~LlvlDd~~~ 127 (796)
.....+.+++ ++++.|+++|++..
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslTr 257 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVTR 257 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchHH
Confidence 2222333444 48899999999943
No 500
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.81 E-value=0.15 Score=54.23 Aligned_cols=89 Identities=18% Similarity=0.251 Sum_probs=52.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccc--ccCC---------eEEEEEeCCcCCHHHHHHHHHHHhc-cC-------CC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVK--RKFD---------IVIWVCVSDAFEEIRIAKAILEVLD-KS-------AS 97 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~--~~f~---------~~~wv~~~~~~~~~~~~~~i~~~l~-~~-------~~ 97 (796)
-+.++|.|-+|+|||||+.++++..... .-.| .++++.+++.....+...+.+..-+ .. ..
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ats 220 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLA 220 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECC
Confidence 3688999999999999999988764310 0012 5677777776554454444444333 11 01
Q ss_pred CCccH-----HHHHHHHHHHhC---CceEEEEEeCC
Q 003773 98 SLGEF-----QSLMQQTQESIR---GKKFFLVLDDV 125 (796)
Q Consensus 98 ~~~~~-----~~~~~~~~~~l~---~~~~LlvlDd~ 125 (796)
..... ....-.+.++++ ++++|+++||+
T Consensus 221 d~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~Dsl 256 (466)
T TIGR01040 221 NDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDM 256 (466)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccCh
Confidence 11111 112223445554 68999999999
Done!