Query 003773
Match_columns 796
No_of_seqs 426 out of 3491
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 03:34:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003773.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003773hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.8E-44 9.4E-49 401.5 23.1 313 18-355 131-472 (549)
2 1vt4_I APAF-1 related killer D 100.0 2.2E-36 7.5E-41 338.9 17.6 284 17-347 130-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 5.6E-34 1.9E-38 354.7 29.5 317 6-354 115-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 2E-32 6.9E-37 311.2 24.7 311 7-351 116-449 (591)
5 3rgz_A Protein brassinosteroid 99.9 1.5E-27 5.3E-32 278.8 14.3 345 419-794 311-765 (768)
6 3rgz_A Protein brassinosteroid 99.9 1.4E-25 4.9E-30 262.2 17.5 396 372-780 199-697 (768)
7 4ecn_A Leucine-rich repeat pro 99.9 9.2E-25 3.2E-29 252.9 18.3 349 372-777 447-841 (876)
8 4eco_A Uncharacterized protein 99.9 8.8E-25 3E-29 249.4 17.9 347 372-777 205-601 (636)
9 3vq2_A TLR4, TOLL-like recepto 99.9 3.6E-25 1.2E-29 253.1 13.2 147 371-530 30-179 (606)
10 2z81_A CD282 antigen, TOLL-lik 99.9 1.5E-24 5.3E-29 244.8 15.2 371 372-776 25-510 (549)
11 3t6q_A CD180 antigen; protein- 99.9 3.6E-24 1.2E-28 244.8 16.8 368 371-775 31-461 (606)
12 4eco_A Uncharacterized protein 99.9 7.1E-25 2.4E-29 250.2 10.6 316 420-780 200-582 (636)
13 3vq2_A TLR4, TOLL-like recepto 99.9 1.6E-23 5.6E-28 239.4 19.8 163 377-557 15-180 (606)
14 2z63_A TOLL-like receptor 4, v 99.9 3.3E-24 1.1E-28 243.5 12.9 147 371-530 26-175 (570)
15 4ecn_A Leucine-rich repeat pro 99.9 1.9E-24 6.5E-29 250.3 11.0 315 420-780 442-822 (876)
16 2z7x_B TOLL-like receptor 1, v 99.9 1.3E-23 4.5E-28 235.3 16.3 149 620-776 321-481 (520)
17 3v47_A TOLL-like receptor 5B a 99.9 2.2E-23 7.5E-28 229.5 17.7 367 371-778 28-410 (455)
18 3j0a_A TOLL-like receptor 5; m 99.9 7.5E-23 2.6E-27 241.7 21.1 152 371-534 22-180 (844)
19 1ziw_A TOLL-like receptor 3; i 99.9 2.1E-23 7.1E-28 241.9 15.6 152 371-535 23-178 (680)
20 4fmz_A Internalin; leucine ric 99.9 4.3E-23 1.5E-27 218.3 16.6 283 422-775 62-345 (347)
21 3t6q_A CD180 antigen; protein- 99.9 1.7E-22 5.7E-27 231.0 22.1 129 373-514 57-189 (606)
22 3o6n_A APL1; leucine-rich repe 99.9 1.1E-22 3.6E-27 218.8 17.7 306 394-777 43-353 (390)
23 1o6v_A Internalin A; bacterial 99.9 3.3E-22 1.1E-26 220.0 21.0 325 373-777 46-389 (466)
24 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 9.2E-23 3.1E-27 230.3 16.6 147 621-776 351-510 (562)
25 4fmz_A Internalin; leucine ric 99.9 3.2E-22 1.1E-26 211.6 18.8 283 422-775 40-323 (347)
26 4fcg_A Uncharacterized protein 99.9 2.2E-22 7.5E-27 209.8 17.2 232 424-774 79-312 (328)
27 2id5_A Lingo-1, leucine rich r 99.9 2.4E-22 8.4E-27 222.3 17.4 281 415-775 45-332 (477)
28 3oja_B Anopheles plasmodium-re 99.9 2.8E-22 9.5E-27 227.5 18.1 304 395-776 50-358 (597)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.8E-22 2.3E-26 223.2 19.9 365 376-775 34-485 (562)
30 3v47_A TOLL-like receptor 5B a 99.9 6.7E-22 2.3E-26 217.6 19.3 328 400-775 31-383 (455)
31 3o6n_A APL1; leucine-rich repe 99.9 1.9E-22 6.5E-27 216.8 14.5 284 424-775 43-330 (390)
32 2z63_A TOLL-like receptor 4, v 99.9 1.5E-21 5.3E-26 221.4 19.3 132 414-556 40-175 (570)
33 1o6v_A Internalin A; bacterial 99.9 3.8E-21 1.3E-25 211.5 21.1 315 395-775 45-365 (466)
34 3j0a_A TOLL-like receptor 5; m 99.9 3.1E-21 1.1E-25 227.9 21.4 346 378-774 9-392 (844)
35 3oja_B Anopheles plasmodium-re 99.9 7E-22 2.4E-26 224.2 14.6 284 425-776 50-337 (597)
36 2z81_A CD282 antigen, TOLL-lik 99.9 1.2E-21 4E-26 221.2 15.0 181 396-599 26-210 (549)
37 2z7x_B TOLL-like receptor 1, v 99.9 4.9E-21 1.7E-25 214.4 19.9 366 376-775 3-456 (520)
38 3bz5_A Internalin-J, INLJ; leu 99.9 8.1E-21 2.8E-25 207.0 20.7 96 422-534 81-176 (457)
39 1ziw_A TOLL-like receptor 3; i 99.8 1.4E-20 4.7E-25 218.1 20.9 360 378-775 9-442 (680)
40 3bz5_A Internalin-J, INLJ; leu 99.8 7E-21 2.4E-25 207.5 15.2 309 395-775 38-351 (457)
41 2id5_A Lingo-1, leucine rich r 99.8 3.3E-20 1.1E-24 205.2 18.0 270 426-774 32-307 (477)
42 1ogq_A PGIP-2, polygalacturona 99.8 3.3E-21 1.1E-25 199.7 6.8 234 448-777 67-305 (313)
43 1xku_A Decorin; proteoglycan, 99.8 1.5E-19 5.1E-24 189.3 17.8 96 426-534 31-127 (330)
44 2ft3_A Biglycan; proteoglycan, 99.8 5.3E-20 1.8E-24 192.9 14.3 133 623-774 193-331 (332)
45 4g8a_A TOLL-like receptor 4; l 99.8 5.1E-20 1.8E-24 212.0 13.6 147 371-530 50-199 (635)
46 4fcg_A Uncharacterized protein 99.8 1.8E-19 6.2E-24 187.7 16.0 201 422-749 100-311 (328)
47 1ogq_A PGIP-2, polygalacturona 99.8 2.4E-20 8E-25 193.3 7.7 229 422-681 72-304 (313)
48 1xku_A Decorin; proteoglycan, 99.8 4.3E-19 1.5E-23 185.8 15.0 271 426-774 52-330 (330)
49 1jl5_A Outer protein YOPM; leu 99.8 3.8E-18 1.3E-22 185.7 21.6 61 707-777 335-410 (454)
50 2ft3_A Biglycan; proteoglycan, 99.8 1.1E-18 3.9E-23 182.7 16.3 265 426-776 33-307 (332)
51 1jl5_A Outer protein YOPM; leu 99.8 1.8E-18 6.2E-23 188.2 17.4 283 428-776 73-370 (454)
52 2z80_A TOLL-like receptor 2, v 99.8 4.3E-19 1.5E-23 187.6 12.0 257 427-778 53-316 (353)
53 3g06_A SSPH2 (leucine-rich rep 99.8 9.2E-18 3.1E-22 188.2 20.0 260 425-778 39-299 (622)
54 3zyi_A Leucine-rich repeat-con 99.8 1.1E-17 3.8E-22 183.1 18.8 109 642-775 192-302 (452)
55 3zyj_A Leucine-rich repeat-con 99.8 1.4E-17 4.8E-22 181.6 19.1 109 642-775 181-291 (440)
56 4g8a_A TOLL-like receptor 4; l 99.8 8.7E-18 3E-22 193.3 18.3 365 372-777 75-581 (635)
57 2z66_A Variable lymphocyte rec 99.7 1.3E-17 4.6E-22 172.5 16.3 239 443-776 16-261 (306)
58 1z7x_W Ribonuclease inhibitor; 99.7 4.8E-20 1.6E-24 203.2 -8.0 364 372-775 2-410 (461)
59 3o53_A Protein LRIM1, AGAP0063 99.7 1.2E-17 4E-22 173.5 7.6 264 400-755 11-278 (317)
60 1wwl_A Monocyte differentiatio 99.7 2.6E-17 9E-22 170.4 9.6 248 422-775 39-308 (312)
61 2z66_A Variable lymphocyte rec 99.7 8.5E-17 2.9E-21 166.4 12.8 99 426-534 28-132 (306)
62 3g06_A SSPH2 (leucine-rich rep 99.7 1.4E-16 4.8E-21 178.6 15.4 260 374-756 41-301 (622)
63 1ozn_A Reticulon 4 receptor; N 99.7 5.6E-16 1.9E-20 158.4 17.5 90 443-534 20-111 (285)
64 2z80_A TOLL-like receptor 2, v 99.7 1.6E-17 5.6E-22 175.5 6.2 235 415-679 65-312 (353)
65 3oja_A Leucine-rich immune mol 99.7 3.3E-16 1.1E-20 172.2 16.6 77 424-514 32-109 (487)
66 3o53_A Protein LRIM1, AGAP0063 99.7 1.5E-16 5E-21 165.2 12.0 261 427-778 11-277 (317)
67 1ozn_A Reticulon 4 receptor; N 99.7 1.3E-16 4.4E-21 163.1 10.9 184 420-659 50-238 (285)
68 3zyj_A Leucine-rich repeat-con 99.7 7.7E-16 2.6E-20 167.8 17.6 99 426-534 64-166 (440)
69 1z7x_W Ribonuclease inhibitor; 99.7 1.1E-18 3.7E-23 192.3 -5.2 342 399-775 3-382 (461)
70 3zyi_A Leucine-rich repeat-con 99.7 6.4E-16 2.2E-20 169.1 16.8 196 426-679 75-277 (452)
71 3ogk_B Coronatine-insensitive 99.6 4.1E-17 1.4E-21 185.9 3.4 63 707-774 461-524 (592)
72 1p9a_G Platelet glycoprotein I 99.6 5.7E-15 2E-19 150.6 17.2 63 707-776 146-208 (290)
73 2xwt_C Thyrotropin receptor; s 99.6 5.5E-15 1.9E-19 146.5 15.6 85 446-533 23-110 (239)
74 3ogk_B Coronatine-insensitive 99.6 7.2E-16 2.5E-20 175.5 9.5 315 418-774 156-499 (592)
75 1wwl_A Monocyte differentiatio 99.6 1.3E-15 4.3E-20 157.7 9.7 204 455-679 93-307 (312)
76 2qen_A Walker-type ATPase; unk 99.6 2.6E-14 8.9E-19 150.9 18.7 297 11-348 8-349 (350)
77 1h6u_A Internalin H; cell adhe 99.6 7.3E-15 2.5E-19 151.4 13.9 190 423-679 38-228 (308)
78 2z62_A TOLL-like receptor 4, v 99.6 3E-14 1E-18 144.7 17.4 87 445-534 18-106 (276)
79 1w5s_A Origin recognition comp 99.6 6.6E-14 2.3E-18 151.4 20.5 300 13-327 20-372 (412)
80 1h6u_A Internalin H; cell adhe 99.6 1.4E-14 4.9E-19 149.2 14.5 197 453-757 37-234 (308)
81 2ast_B S-phase kinase-associat 99.6 8.4E-16 2.9E-20 161.4 4.5 116 619-760 190-314 (336)
82 2fna_A Conserved hypothetical 99.6 1.4E-13 4.6E-18 145.9 21.4 291 12-346 10-355 (357)
83 2p1m_B Transport inhibitor res 99.5 8.3E-16 2.8E-20 175.1 2.8 154 373-533 105-270 (594)
84 1p9a_G Platelet glycoprotein I 99.5 2.4E-14 8.1E-19 146.0 13.2 158 451-658 49-207 (290)
85 3oja_A Leucine-rich immune mol 99.5 4.2E-16 1.4E-20 171.4 -0.6 220 416-676 48-270 (487)
86 2z62_A TOLL-like receptor 4, v 99.5 1.1E-14 3.9E-19 147.8 9.9 197 416-664 42-242 (276)
87 2o6q_A Variable lymphocyte rec 99.5 2.2E-13 7.5E-18 137.6 18.2 105 623-775 109-217 (270)
88 4ay9_X Follicle-stimulating ho 99.5 2E-14 7E-19 151.2 10.7 90 443-534 18-110 (350)
89 3rfs_A Internalin B, repeat mo 99.5 9.4E-14 3.2E-18 140.5 15.1 45 707-764 203-247 (272)
90 2xwt_C Thyrotropin receptor; s 99.5 5.3E-14 1.8E-18 139.4 13.0 88 426-522 31-122 (239)
91 2p1m_B Transport inhibitor res 99.5 9.1E-16 3.1E-20 174.8 -1.5 130 394-535 103-242 (594)
92 2o6q_A Variable lymphocyte rec 99.5 1.4E-13 4.8E-18 139.1 14.0 96 427-534 17-115 (270)
93 4glp_A Monocyte differentiatio 99.5 1.7E-13 5.7E-18 141.7 14.5 205 424-679 89-305 (310)
94 3rfs_A Internalin B, repeat mo 99.5 8E-14 2.7E-18 141.0 10.8 176 453-679 37-216 (272)
95 4glp_A Monocyte differentiatio 99.5 1.4E-13 4.7E-18 142.2 12.1 203 456-775 90-306 (310)
96 2ast_B S-phase kinase-associat 99.5 2.1E-14 7E-19 150.7 5.8 207 422-678 64-282 (336)
97 4ay9_X Follicle-stimulating ho 99.5 5.4E-13 1.9E-17 140.3 15.6 71 460-533 12-84 (350)
98 2ca6_A RAN GTPase-activating p 99.4 8.1E-15 2.8E-19 156.8 0.7 109 422-534 56-193 (386)
99 2ca6_A RAN GTPase-activating p 99.4 3.5E-14 1.2E-18 151.9 4.2 240 421-680 27-315 (386)
100 1h6t_A Internalin B; cell adhe 99.4 5.7E-13 1.9E-17 135.9 12.1 79 424-514 44-122 (291)
101 2v1u_A Cell division control p 99.4 6.6E-12 2.2E-16 134.4 20.7 294 13-327 17-352 (387)
102 2qby_B CDC6 homolog 3, cell di 99.4 1.2E-11 3.9E-16 132.3 22.2 293 13-328 18-341 (384)
103 3goz_A Leucine-rich repeat-con 99.4 5.1E-14 1.7E-18 149.0 2.8 92 416-515 12-120 (362)
104 1m9s_A Internalin B; cell inva 99.4 1.2E-12 4E-17 146.7 12.4 169 424-658 41-209 (605)
105 1h6t_A Internalin B; cell adhe 99.4 1.4E-12 4.9E-17 132.9 12.1 77 453-534 42-118 (291)
106 1fnn_A CDC6P, cell division co 99.4 5.4E-11 1.8E-15 127.4 24.9 295 13-328 15-353 (389)
107 3cvr_A Invasion plasmid antige 99.3 3.7E-12 1.3E-16 140.9 13.5 109 624-758 141-249 (571)
108 3m19_A Variable lymphocyte rec 99.3 8.5E-12 2.9E-16 124.4 14.9 98 426-534 14-113 (251)
109 3m19_A Variable lymphocyte rec 99.3 1.2E-11 4.1E-16 123.3 15.9 57 457-515 14-70 (251)
110 1m9s_A Internalin B; cell inva 99.3 1.7E-12 5.8E-17 145.4 10.7 187 425-719 20-207 (605)
111 1njg_A DNA polymerase III subu 99.3 1E-11 3.5E-16 123.7 14.7 202 10-223 18-231 (250)
112 3cvr_A Invasion plasmid antige 99.3 1.5E-12 5.1E-17 144.0 9.2 188 427-664 60-248 (571)
113 4ezg_A Putative uncharacterize 99.3 3.4E-12 1.2E-16 121.9 10.1 69 444-514 54-122 (197)
114 3goz_A Leucine-rich repeat-con 99.3 4.3E-13 1.5E-17 141.8 3.6 213 420-679 44-295 (362)
115 4ezg_A Putative uncharacterize 99.3 4.4E-12 1.5E-16 121.2 9.3 79 453-534 40-118 (197)
116 1dce_A Protein (RAB geranylger 99.3 9.4E-14 3.2E-18 154.6 -4.2 214 454-769 346-566 (567)
117 4b8c_D Glucose-repressible alc 99.3 3.8E-12 1.3E-16 146.4 8.8 156 373-542 173-328 (727)
118 1xeu_A Internalin C; cellular 99.3 6.5E-12 2.2E-16 125.8 9.1 96 424-534 17-112 (263)
119 2qby_A CDC6 homolog 1, cell di 99.3 1.8E-11 6.1E-16 131.0 13.0 293 13-326 18-348 (386)
120 2chg_A Replication factor C sm 99.2 1.2E-10 4E-15 114.0 16.2 192 10-221 12-205 (226)
121 2o6s_A Variable lymphocyte rec 99.2 1.6E-10 5.6E-15 111.3 13.8 88 443-534 16-106 (208)
122 2v9t_B SLIT homolog 2 protein 99.2 3.4E-11 1.2E-15 117.1 8.0 112 414-534 44-158 (220)
123 3e6j_A Variable lymphocyte rec 99.2 6.6E-11 2.3E-15 115.8 9.3 110 415-534 53-165 (229)
124 1xeu_A Internalin C; cellular 99.1 1.1E-10 3.7E-15 116.9 10.7 98 422-534 37-134 (263)
125 2v70_A SLIT-2, SLIT homolog 2 99.1 9E-11 3.1E-15 114.0 9.6 142 377-534 15-159 (220)
126 2o6s_A Variable lymphocyte rec 99.1 7E-11 2.4E-15 114.0 7.8 107 418-534 44-154 (208)
127 2je0_A Acidic leucine-rich nuc 99.1 5E-11 1.7E-15 108.1 5.6 100 425-534 16-119 (149)
128 2xot_A Amphoterin-induced prot 99.1 2.6E-10 9E-15 120.2 11.5 88 443-534 27-118 (361)
129 4b8c_D Glucose-repressible alc 99.1 4.8E-11 1.7E-15 137.2 6.2 90 443-534 210-299 (727)
130 2ell_A Acidic leucine-rich nuc 99.1 9.8E-11 3.3E-15 108.6 6.9 100 425-534 23-126 (168)
131 2je0_A Acidic leucine-rich nuc 99.1 5.9E-11 2E-15 107.6 4.7 104 421-535 37-147 (149)
132 1sxj_B Activator 1 37 kDa subu 99.1 5.8E-10 2E-14 115.9 12.6 193 10-222 16-212 (323)
133 2v9t_B SLIT homolog 2 protein 99.1 2.7E-10 9.3E-15 110.6 9.2 99 427-534 33-134 (220)
134 3e6j_A Variable lymphocyte rec 99.1 2.7E-10 9.2E-15 111.5 9.1 131 371-515 38-170 (229)
135 1a9n_A U2A', U2A'; complex (nu 99.1 1.2E-10 4E-15 108.9 6.1 100 425-535 41-147 (176)
136 3sb4_A Hypothetical leucine ri 99.1 5E-10 1.7E-14 116.5 11.3 264 425-770 48-328 (329)
137 2ell_A Acidic leucine-rich nuc 99.0 2.6E-10 8.8E-15 105.7 7.9 104 422-536 45-155 (168)
138 2v70_A SLIT-2, SLIT homolog 2 99.0 5.8E-10 2E-14 108.3 9.2 101 426-534 32-135 (220)
139 1dce_A Protein (RAB geranylger 99.0 3.5E-10 1.2E-14 125.8 7.8 133 417-566 400-542 (567)
140 2xot_A Amphoterin-induced prot 99.0 5.3E-10 1.8E-14 117.8 8.7 112 414-534 51-169 (361)
141 1a9n_A U2A', U2A'; complex (nu 99.0 5E-10 1.7E-14 104.6 5.7 101 422-534 15-119 (176)
142 1w8a_A SLIT protein; signaling 98.9 8.9E-10 3E-14 104.4 7.3 100 427-534 30-132 (192)
143 3te6_A Regulatory protein SIR3 98.9 6.5E-09 2.2E-13 104.8 13.5 168 17-187 22-212 (318)
144 2wfh_A SLIT homolog 2 protein 98.9 2.2E-09 7.7E-14 101.6 9.4 72 443-514 40-112 (193)
145 1w8a_A SLIT protein; signaling 98.9 1.5E-09 5.1E-14 102.9 8.1 96 429-534 11-108 (192)
146 1iqp_A RFCS; clamp loader, ext 98.9 4.7E-09 1.6E-13 109.2 11.6 193 10-223 20-215 (327)
147 2wfh_A SLIT homolog 2 protein 98.9 3.1E-09 1.1E-13 100.6 9.0 86 420-514 48-136 (193)
148 1hqc_A RUVB; extended AAA-ATPa 98.9 3.6E-09 1.2E-13 109.8 9.9 184 9-223 6-214 (324)
149 1jr3_A DNA polymerase III subu 98.9 1.4E-08 4.7E-13 107.8 14.1 201 9-220 10-221 (373)
150 1ds9_A Outer arm dynein; leuci 98.9 5.3E-11 1.8E-15 113.8 -4.8 102 421-534 43-146 (198)
151 2chq_A Replication factor C sm 98.8 3.9E-08 1.3E-12 101.8 14.5 187 10-220 12-204 (319)
152 3sb4_A Hypothetical leucine ri 98.8 2.6E-08 8.8E-13 103.4 11.8 223 456-746 100-328 (329)
153 2o6r_A Variable lymphocyte rec 98.8 2E-08 6.8E-13 93.7 9.1 85 421-514 47-134 (177)
154 2r9u_A Variable lymphocyte rec 98.7 2E-08 6.7E-13 93.2 8.8 88 443-534 21-111 (174)
155 2r9u_A Variable lymphocyte rec 98.7 1.3E-08 4.4E-13 94.5 7.4 89 426-524 33-124 (174)
156 1ds9_A Outer arm dynein; leuci 98.7 1.1E-10 3.8E-15 111.5 -7.3 104 421-534 65-180 (198)
157 3g39_A Variable lymphocyte rec 98.7 3E-08 1E-12 91.7 9.0 95 428-534 11-108 (170)
158 2o6r_A Variable lymphocyte rec 98.7 4.4E-08 1.5E-12 91.4 9.5 99 426-534 28-130 (177)
159 1sxj_D Activator 1 41 kDa subu 98.6 2.3E-07 7.7E-12 97.5 13.2 200 10-219 32-234 (353)
160 1jbk_A CLPB protein; beta barr 98.6 1E-07 3.5E-12 90.4 9.1 155 11-182 18-194 (195)
161 1sxj_E Activator 1 40 kDa subu 98.5 3.8E-07 1.3E-11 95.8 11.8 200 10-220 9-237 (354)
162 3bos_A Putative DNA replicatio 98.5 9.8E-08 3.3E-12 94.2 6.7 176 14-221 27-218 (242)
163 3g39_A Variable lymphocyte rec 98.5 1.7E-07 5.6E-12 86.6 7.6 81 426-515 30-113 (170)
164 4fdw_A Leucine rich hypothetic 98.5 3.3E-06 1.1E-10 89.5 18.4 120 641-788 266-394 (401)
165 3pfi_A Holliday junction ATP-d 98.5 1.1E-06 3.6E-11 91.6 14.2 180 9-220 23-227 (338)
166 2ifg_A High affinity nerve gro 98.4 3.2E-07 1.1E-11 96.0 8.9 69 445-514 20-90 (347)
167 1sxj_A Activator 1 95 kDa subu 98.4 8E-07 2.7E-11 97.8 12.1 197 10-221 34-254 (516)
168 2z4s_A Chromosomal replication 98.4 8.6E-07 2.9E-11 95.1 11.9 186 15-219 105-305 (440)
169 3u61_B DNA polymerase accessor 98.4 1.7E-06 5.8E-11 89.4 13.7 183 10-217 21-213 (324)
170 3pvs_A Replication-associated 98.4 3.6E-06 1.2E-10 90.0 15.5 184 10-220 21-215 (447)
171 3h4m_A Proteasome-activating n 98.4 3.7E-06 1.3E-10 85.0 14.0 181 13-219 15-230 (285)
172 4fs7_A Uncharacterized protein 98.4 6E-06 2E-10 87.9 16.2 58 707-773 318-376 (394)
173 3uk6_A RUVB-like 2; hexameric 98.3 1.3E-06 4.3E-11 92.3 10.7 196 14-220 43-303 (368)
174 4fdw_A Leucine rich hypothetic 98.3 7E-06 2.4E-10 87.0 15.7 53 458-512 158-211 (401)
175 2ifg_A High affinity nerve gro 98.3 8.6E-07 2.9E-11 92.7 8.0 91 415-515 22-114 (347)
176 1a5t_A Delta prime, HOLB; zinc 98.3 9.8E-06 3.4E-10 83.7 14.8 170 21-219 8-204 (334)
177 2qz4_A Paraplegin; AAA+, SPG7, 98.2 2.2E-05 7.6E-10 78.1 16.6 184 13-219 4-221 (262)
178 1sxj_C Activator 1 40 kDa subu 98.2 8E-06 2.7E-10 84.8 13.3 185 10-215 20-207 (340)
179 2p65_A Hypothetical protein PF 98.2 2.1E-06 7.2E-11 80.6 7.0 49 11-60 18-66 (187)
180 3syl_A Protein CBBX; photosynt 98.1 1.6E-05 5.6E-10 81.4 13.2 154 16-187 32-218 (309)
181 1l8q_A Chromosomal replication 98.1 1.9E-05 6.6E-10 81.3 13.1 156 36-215 36-203 (324)
182 3eie_A Vacuolar protein sortin 98.1 4.3E-05 1.5E-09 78.5 14.9 183 13-220 16-228 (322)
183 1d2n_A N-ethylmaleimide-sensit 98.1 4.2E-05 1.4E-09 76.6 14.2 171 14-212 32-229 (272)
184 3n70_A Transport activator; si 98.0 4.9E-06 1.7E-10 74.2 6.2 112 16-155 2-115 (145)
185 1xwi_A SKD1 protein; VPS4B, AA 98.0 0.00017 5.8E-09 73.8 18.5 185 13-221 10-224 (322)
186 2ra8_A Uncharacterized protein 98.0 2E-06 6.8E-11 89.4 4.0 64 583-657 250-318 (362)
187 3d8b_A Fidgetin-like protein 1 98.0 4.4E-05 1.5E-09 79.5 14.2 185 12-221 81-296 (357)
188 2qp9_X Vacuolar protein sortin 98.0 7.4E-05 2.5E-09 77.7 15.8 181 13-220 49-261 (355)
189 3un9_A NLR family member X1; l 98.0 5.2E-07 1.8E-11 94.7 -0.8 44 614-657 202-250 (372)
190 3e4g_A ATP synthase subunit S, 98.0 1.4E-06 4.7E-11 79.1 0.8 68 706-779 82-155 (176)
191 3vfd_A Spastin; ATPase, microt 98.0 0.00013 4.6E-09 77.0 16.3 184 12-220 112-326 (389)
192 3b9p_A CG5977-PA, isoform A; A 97.9 0.00018 6.1E-09 73.0 16.2 183 13-220 19-233 (297)
193 3cf0_A Transitional endoplasmi 97.9 8.7E-05 3E-09 75.3 13.8 177 14-215 14-223 (301)
194 4fs7_A Uncharacterized protein 97.9 0.00011 3.8E-09 77.9 15.2 59 706-773 294-353 (394)
195 1qvr_A CLPB protein; coiled co 97.9 1.6E-05 5.6E-10 93.1 8.5 157 12-185 167-344 (854)
196 2zan_A Vacuolar protein sortin 97.9 0.00015 5.2E-09 77.7 15.4 185 13-220 132-345 (444)
197 2gno_A DNA polymerase III, gam 97.9 4E-05 1.4E-09 77.4 10.0 147 20-186 2-152 (305)
198 3pxg_A Negative regulator of g 97.8 5.4E-05 1.8E-09 81.9 10.3 149 13-186 178-338 (468)
199 3un9_A NLR family member X1; l 97.8 3.8E-06 1.3E-10 88.1 0.4 59 456-514 154-221 (372)
200 4gt6_A Cell surface protein; l 97.8 0.00028 9.7E-09 74.8 14.9 124 619-772 261-387 (394)
201 3e4g_A ATP synthase subunit S, 97.8 6E-06 2.1E-10 74.9 1.4 91 647-754 62-154 (176)
202 3ec2_A DNA replication protein 97.8 2.3E-05 7.7E-10 72.9 5.4 102 37-155 38-142 (180)
203 4b4t_J 26S protease regulatory 97.7 0.00054 1.9E-08 70.7 15.9 173 15-213 148-354 (405)
204 2w58_A DNAI, primosome compone 97.7 2.3E-05 8E-10 74.4 5.2 100 38-155 55-158 (202)
205 1ofh_A ATP-dependent HSL prote 97.7 0.00027 9.1E-09 72.2 13.1 47 14-60 14-73 (310)
206 4fcw_A Chaperone protein CLPB; 97.7 7.1E-05 2.4E-09 76.6 8.6 118 14-140 16-143 (311)
207 2kjq_A DNAA-related protein; s 97.7 2.4E-05 8.1E-10 69.8 4.4 105 15-155 18-124 (149)
208 4b4t_K 26S protease regulatory 97.7 0.00059 2E-08 71.6 15.1 173 15-213 172-379 (428)
209 2ra8_A Uncharacterized protein 97.7 1.3E-05 4.3E-10 83.3 2.4 63 583-657 277-341 (362)
210 3rw6_A Nuclear RNA export fact 97.7 1.9E-05 6.5E-10 77.5 3.4 79 454-534 167-257 (267)
211 3hu3_A Transitional endoplasmi 97.6 0.0002 7E-09 77.2 11.6 181 14-219 203-414 (489)
212 1lv7_A FTSH; alpha/beta domain 97.6 0.00078 2.7E-08 66.5 14.9 182 12-218 9-223 (257)
213 4b4t_L 26S protease subunit RP 97.6 0.001 3.6E-08 69.8 16.3 173 15-213 181-387 (437)
214 3co5_A Putative two-component 97.6 1.4E-05 4.7E-10 71.0 1.4 110 15-155 4-115 (143)
215 2bjv_A PSP operon transcriptio 97.6 0.00012 4.1E-09 72.9 8.4 62 14-77 5-67 (265)
216 3rw6_A Nuclear RNA export fact 97.5 8.2E-05 2.8E-09 73.0 6.1 84 419-511 163-258 (267)
217 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00073 2.5E-08 78.3 14.6 158 13-186 184-362 (758)
218 4gt6_A Cell surface protein; l 97.5 0.0018 6E-08 68.6 16.0 106 642-776 261-370 (394)
219 3pxi_A Negative regulator of g 97.5 0.0003 1E-08 81.4 10.5 149 13-186 178-338 (758)
220 1io0_A Tropomodulin; LRR prote 97.4 5.5E-05 1.9E-09 70.5 3.3 97 415-514 25-133 (185)
221 4b4t_H 26S protease regulatory 97.4 0.0021 7.2E-08 67.3 15.4 173 15-213 209-415 (467)
222 2ce7_A Cell division protein F 97.4 0.0019 6.5E-08 69.1 15.4 176 13-213 14-221 (476)
223 2r62_A Cell division protease 97.4 4.7E-05 1.6E-09 76.1 2.2 154 13-186 9-196 (268)
224 2c9o_A RUVB-like 1; hexameric 97.4 0.00074 2.5E-08 72.8 11.6 97 118-219 297-409 (456)
225 4b4t_M 26S protease regulatory 97.4 0.0012 4.3E-08 69.2 12.5 174 14-213 180-387 (434)
226 1ojl_A Transcriptional regulat 97.4 0.00015 5.3E-09 73.3 5.5 46 15-60 2-48 (304)
227 1in4_A RUVB, holliday junction 97.3 0.0013 4.6E-08 67.6 12.5 175 13-219 23-222 (334)
228 3pxi_A Negative regulator of g 97.3 0.00038 1.3E-08 80.5 8.2 151 15-186 491-675 (758)
229 4b4t_I 26S protease regulatory 97.3 0.0037 1.3E-07 64.8 14.5 173 15-213 182-388 (437)
230 3t15_A Ribulose bisphosphate c 97.2 0.0038 1.3E-07 62.7 13.3 26 35-60 34-59 (293)
231 1io0_A Tropomodulin; LRR prote 97.0 0.00049 1.7E-08 64.0 5.1 95 418-515 57-162 (185)
232 2x8a_A Nuclear valosin-contain 97.0 0.011 3.7E-07 58.6 14.5 126 40-186 47-191 (274)
233 1r6b_X CLPA protein; AAA+, N-t 96.9 0.0008 2.7E-08 78.0 6.8 114 15-141 458-582 (758)
234 3m6a_A ATP-dependent protease 96.9 0.0063 2.2E-07 66.8 13.1 159 16-186 82-266 (543)
235 2qgz_A Helicase loader, putati 96.9 0.0004 1.4E-08 70.3 3.0 38 37-75 152-189 (308)
236 2cvh_A DNA repair and recombin 96.9 0.0053 1.8E-07 58.8 10.8 85 37-127 20-116 (220)
237 4h09_A Hypothetical leucine ri 96.8 0.0082 2.8E-07 63.0 13.0 37 733-771 304-341 (379)
238 2r44_A Uncharacterized protein 96.8 0.0036 1.2E-07 64.3 9.7 155 11-187 23-199 (331)
239 1qvr_A CLPB protein; coiled co 96.8 0.00097 3.3E-08 78.0 5.6 131 15-155 558-710 (854)
240 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.00058 2E-08 67.9 2.8 68 38-127 124-193 (331)
241 3cf2_A TER ATPase, transitiona 96.7 0.0089 3E-07 67.9 12.7 173 15-213 204-407 (806)
242 1ixz_A ATP-dependent metallopr 96.6 0.019 6.6E-07 56.2 13.2 175 13-213 14-221 (254)
243 1jr3_D DNA polymerase III, del 96.6 0.02 6.9E-07 59.0 13.9 157 36-218 17-183 (343)
244 1um8_A ATP-dependent CLP prote 96.6 0.0055 1.9E-07 64.2 9.6 24 37-60 72-95 (376)
245 2b8t_A Thymidine kinase; deoxy 96.6 0.0012 4.1E-08 62.7 3.8 113 37-157 12-127 (223)
246 1iy2_A ATP-dependent metallopr 96.5 0.037 1.2E-06 55.1 14.3 175 13-213 38-245 (278)
247 2dhr_A FTSH; AAA+ protein, hex 96.4 0.023 7.9E-07 61.1 13.1 173 12-213 28-236 (499)
248 1ypw_A Transitional endoplasmi 96.3 0.0072 2.5E-07 69.8 8.8 152 14-186 203-385 (806)
249 1g5t_A COB(I)alamin adenosyltr 96.3 0.0031 1.1E-07 57.9 4.4 117 38-156 29-163 (196)
250 3io5_A Recombination and repai 96.2 0.016 5.3E-07 57.5 9.0 84 39-127 30-122 (333)
251 1v5w_A DMC1, meiotic recombina 96.1 0.022 7.5E-07 58.5 10.2 56 36-92 121-180 (343)
252 1n0w_A DNA repair protein RAD5 96.1 0.014 4.9E-07 56.7 8.5 89 37-126 24-129 (243)
253 3hr8_A Protein RECA; alpha and 96.1 0.011 3.7E-07 60.5 7.7 84 36-126 60-149 (356)
254 2z43_A DNA repair and recombin 96.0 0.014 4.8E-07 59.5 8.1 88 37-125 107-212 (324)
255 2w0m_A SSO2452; RECA, SSPF, un 96.0 0.017 5.8E-07 55.7 8.3 114 38-156 24-168 (235)
256 1xp8_A RECA protein, recombina 95.9 0.018 6.1E-07 59.4 8.5 84 37-127 74-163 (366)
257 4h09_A Hypothetical leucine ri 95.9 0.044 1.5E-06 57.4 11.7 101 621-748 238-342 (379)
258 2i1q_A DNA repair and recombin 95.8 0.018 6.1E-07 58.8 8.2 89 36-125 97-213 (322)
259 2zr9_A Protein RECA, recombina 95.5 0.023 7.8E-07 58.3 7.4 85 36-127 60-150 (349)
260 2pze_A Cystic fibrosis transme 95.5 0.11 3.7E-06 49.7 11.7 23 38-60 35-57 (229)
261 1u94_A RECA protein, recombina 95.5 0.02 6.9E-07 58.8 6.9 84 36-126 62-151 (356)
262 2cbz_A Multidrug resistance-as 95.4 0.066 2.3E-06 51.5 9.9 23 38-60 32-54 (237)
263 1sky_E F1-ATPase, F1-ATP synth 95.4 0.018 6.2E-07 60.6 6.1 87 38-125 152-254 (473)
264 2orw_A Thymidine kinase; TMTK, 95.3 0.003 1E-07 58.4 0.1 108 38-156 4-113 (184)
265 2px0_A Flagellar biosynthesis 95.3 0.037 1.2E-06 55.3 8.0 87 36-125 104-191 (296)
266 1qhx_A CPT, protein (chloramph 95.0 0.011 3.6E-07 54.4 3.0 23 38-60 4-26 (178)
267 3ice_A Transcription terminati 94.9 0.028 9.4E-07 57.2 5.6 41 37-78 174-215 (422)
268 3c8u_A Fructokinase; YP_612366 94.8 0.022 7.6E-07 53.8 4.5 26 35-60 20-45 (208)
269 3kb2_A SPBC2 prophage-derived 94.8 0.013 4.5E-07 53.4 2.9 23 38-60 2-24 (173)
270 3nbx_X ATPase RAVA; AAA+ ATPas 94.8 0.012 4E-07 63.4 2.8 46 13-61 20-65 (500)
271 1zp6_A Hypothetical protein AT 94.8 0.019 6.3E-07 53.4 3.8 25 36-60 8-32 (191)
272 1rz3_A Hypothetical protein rb 94.7 0.021 7.2E-07 53.6 4.2 26 35-60 20-45 (201)
273 1pzn_A RAD51, DNA repair and r 94.7 0.089 3.1E-06 54.0 9.0 91 36-127 130-242 (349)
274 1kgd_A CASK, peripheral plasma 94.7 0.019 6.5E-07 52.8 3.6 23 38-60 6-28 (180)
275 3lw7_A Adenylate kinase relate 94.7 0.017 5.7E-07 52.9 3.2 20 38-57 2-21 (179)
276 1ly1_A Polynucleotide kinase; 94.6 0.018 6.2E-07 52.9 3.3 22 38-59 3-24 (181)
277 1gvn_B Zeta; postsegregational 94.6 0.026 9E-07 56.2 4.7 26 35-60 31-56 (287)
278 3vaa_A Shikimate kinase, SK; s 94.6 0.018 6.1E-07 54.0 3.2 24 37-60 25-48 (199)
279 3hws_A ATP-dependent CLP prote 94.6 0.02 6.9E-07 59.5 4.0 45 16-60 16-74 (363)
280 3lda_A DNA repair protein RAD5 94.5 0.086 2.9E-06 54.9 8.5 56 37-93 178-237 (400)
281 3uie_A Adenylyl-sulfate kinase 94.5 0.024 8.3E-07 53.1 4.0 26 36-61 24-49 (200)
282 3bh0_A DNAB-like replicative h 94.5 0.17 5.7E-06 51.2 10.4 51 37-91 68-118 (315)
283 1kag_A SKI, shikimate kinase I 94.4 0.017 5.8E-07 52.7 2.7 23 38-60 5-27 (173)
284 3trf_A Shikimate kinase, SK; a 94.4 0.019 6.4E-07 53.1 2.9 24 37-60 5-28 (185)
285 1ex7_A Guanylate kinase; subst 94.3 0.018 6.1E-07 52.9 2.4 23 38-60 2-24 (186)
286 3tau_A Guanylate kinase, GMP k 94.3 0.025 8.5E-07 53.4 3.5 25 36-60 7-31 (208)
287 3fwy_A Light-independent proto 94.3 0.025 8.7E-07 56.9 3.8 42 35-78 46-87 (314)
288 3sr0_A Adenylate kinase; phosp 94.3 0.078 2.7E-06 49.7 6.9 22 39-60 2-23 (206)
289 1zuh_A Shikimate kinase; alpha 94.2 0.022 7.7E-07 51.6 3.0 25 36-60 6-30 (168)
290 3a00_A Guanylate kinase, GMP k 94.2 0.019 6.6E-07 53.1 2.5 23 38-60 2-24 (186)
291 4a1f_A DNAB helicase, replicat 94.2 0.12 4.1E-06 52.3 8.5 51 37-91 46-96 (338)
292 1nks_A Adenylate kinase; therm 94.1 0.025 8.4E-07 52.7 3.2 23 38-60 2-24 (194)
293 1vma_A Cell division protein F 94.1 0.16 5.6E-06 50.7 9.3 87 36-125 103-195 (306)
294 1knq_A Gluconate kinase; ALFA/ 94.1 0.035 1.2E-06 50.7 4.1 24 37-60 8-31 (175)
295 2rhm_A Putative kinase; P-loop 94.1 0.028 9.5E-07 52.3 3.4 24 37-60 5-28 (193)
296 4eun_A Thermoresistant glucoki 94.1 0.028 9.7E-07 52.6 3.5 25 36-60 28-52 (200)
297 3t61_A Gluconokinase; PSI-biol 94.0 0.019 6.6E-07 53.9 2.2 24 37-60 18-41 (202)
298 2bdt_A BH3686; alpha-beta prot 94.0 0.03 1E-06 51.9 3.5 22 38-59 3-24 (189)
299 3cf2_A TER ATPase, transitiona 94.0 0.22 7.4E-06 56.6 11.0 46 15-60 477-534 (806)
300 3tr0_A Guanylate kinase, GMP k 94.0 0.031 1.1E-06 52.6 3.6 23 38-60 8-30 (205)
301 1kht_A Adenylate kinase; phosp 94.0 0.026 8.8E-07 52.4 3.0 23 38-60 4-26 (192)
302 1ye8_A Protein THEP1, hypothet 94.0 0.03 1E-06 51.2 3.4 22 39-60 2-23 (178)
303 4gp7_A Metallophosphoesterase; 94.0 0.03 1E-06 51.0 3.2 23 37-59 9-31 (171)
304 3iij_A Coilin-interacting nucl 93.9 0.024 8.2E-07 52.1 2.6 24 37-60 11-34 (180)
305 1y63_A LMAJ004144AAA protein; 93.9 0.03 1E-06 51.6 3.3 24 37-60 10-33 (184)
306 1uf9_A TT1252 protein; P-loop, 93.9 0.034 1.2E-06 52.2 3.7 26 35-60 6-31 (203)
307 3asz_A Uridine kinase; cytidin 93.9 0.033 1.1E-06 52.7 3.6 25 36-60 5-29 (211)
308 1g8p_A Magnesium-chelatase 38 93.9 0.016 5.5E-07 60.0 1.5 47 13-60 22-68 (350)
309 2qor_A Guanylate kinase; phosp 93.9 0.026 8.9E-07 53.1 2.8 24 37-60 12-35 (204)
310 2qt1_A Nicotinamide riboside k 93.9 0.037 1.3E-06 52.2 3.8 25 36-60 20-44 (207)
311 2ze6_A Isopentenyl transferase 93.9 0.031 1.1E-06 54.6 3.3 23 38-60 2-24 (253)
312 3ney_A 55 kDa erythrocyte memb 93.8 0.033 1.1E-06 51.5 3.2 25 36-60 18-42 (197)
313 1ukz_A Uridylate kinase; trans 93.8 0.039 1.3E-06 51.8 3.9 26 35-60 13-38 (203)
314 1via_A Shikimate kinase; struc 93.8 0.025 8.7E-07 51.6 2.4 22 39-60 6-27 (175)
315 1lvg_A Guanylate kinase, GMP k 93.8 0.027 9.3E-07 52.7 2.7 23 38-60 5-27 (198)
316 1jjv_A Dephospho-COA kinase; P 93.7 0.038 1.3E-06 52.0 3.6 22 38-59 3-24 (206)
317 3tqc_A Pantothenate kinase; bi 93.7 0.13 4.4E-06 51.7 7.6 26 35-60 90-115 (321)
318 2ck3_D ATP synthase subunit be 93.7 0.18 6E-06 53.0 8.7 53 38-91 154-207 (482)
319 1odf_A YGR205W, hypothetical 3 93.7 0.041 1.4E-06 54.7 3.9 27 34-60 28-54 (290)
320 2j41_A Guanylate kinase; GMP, 93.6 0.039 1.3E-06 52.0 3.6 23 38-60 7-29 (207)
321 1fx0_B ATP synthase beta chain 93.6 0.095 3.2E-06 55.3 6.6 53 37-90 165-218 (498)
322 3upu_A ATP-dependent DNA helic 93.6 0.12 4E-06 55.6 7.7 24 38-61 46-69 (459)
323 1xjc_A MOBB protein homolog; s 93.6 0.04 1.4E-06 49.5 3.3 25 36-60 3-27 (169)
324 3rfe_A Platelet glycoprotein I 93.6 0.084 2.9E-06 45.2 5.2 49 443-493 17-68 (130)
325 2jaq_A Deoxyguanosine kinase; 93.6 0.036 1.2E-06 52.1 3.1 22 39-60 2-23 (205)
326 2c95_A Adenylate kinase 1; tra 93.5 0.036 1.2E-06 51.6 3.1 24 37-60 9-32 (196)
327 1tev_A UMP-CMP kinase; ploop, 93.5 0.04 1.4E-06 51.3 3.4 23 38-60 4-26 (196)
328 2if2_A Dephospho-COA kinase; a 93.5 0.034 1.2E-06 52.3 2.9 21 39-59 3-23 (204)
329 2iyv_A Shikimate kinase, SK; t 93.5 0.027 9.2E-07 51.9 2.1 23 38-60 3-25 (184)
330 1htw_A HI0065; nucleotide-bind 93.5 0.046 1.6E-06 48.7 3.5 25 36-60 32-56 (158)
331 2yvu_A Probable adenylyl-sulfa 93.5 0.049 1.7E-06 50.3 3.9 25 36-60 12-36 (186)
332 1cke_A CK, MSSA, protein (cyti 93.5 0.037 1.3E-06 53.0 3.1 23 38-60 6-28 (227)
333 1e6c_A Shikimate kinase; phosp 93.5 0.031 1.1E-06 50.9 2.4 23 38-60 3-25 (173)
334 3umf_A Adenylate kinase; rossm 93.5 0.046 1.6E-06 51.5 3.6 26 35-60 27-52 (217)
335 3cm0_A Adenylate kinase; ATP-b 93.4 0.042 1.4E-06 50.7 3.3 23 38-60 5-27 (186)
336 2grj_A Dephospho-COA kinase; T 93.4 0.04 1.4E-06 51.0 3.1 25 36-60 11-35 (192)
337 2cdn_A Adenylate kinase; phosp 93.4 0.046 1.6E-06 51.2 3.6 24 37-60 20-43 (201)
338 2pt5_A Shikimate kinase, SK; a 93.4 0.042 1.4E-06 49.7 3.1 22 39-60 2-23 (168)
339 1uj2_A Uridine-cytidine kinase 93.3 0.045 1.5E-06 53.5 3.5 25 36-60 21-45 (252)
340 1znw_A Guanylate kinase, GMP k 93.3 0.042 1.4E-06 51.8 3.2 24 37-60 20-43 (207)
341 2plr_A DTMP kinase, probable t 93.3 0.044 1.5E-06 51.8 3.3 23 38-60 5-27 (213)
342 2bwj_A Adenylate kinase 5; pho 93.3 0.038 1.3E-06 51.7 2.8 23 38-60 13-35 (199)
343 3aez_A Pantothenate kinase; tr 93.3 0.058 2E-06 54.3 4.2 26 35-60 88-113 (312)
344 2p5t_B PEZT; postsegregational 93.2 0.054 1.9E-06 52.9 3.9 26 35-60 30-55 (253)
345 3a4m_A L-seryl-tRNA(SEC) kinas 93.2 0.049 1.7E-06 53.5 3.6 24 37-60 4-27 (260)
346 1s96_A Guanylate kinase, GMP k 93.2 0.049 1.7E-06 51.6 3.5 24 37-60 16-39 (219)
347 1qf9_A UMP/CMP kinase, protein 93.2 0.053 1.8E-06 50.3 3.7 24 37-60 6-29 (194)
348 2jeo_A Uridine-cytidine kinase 93.2 0.056 1.9E-06 52.5 3.9 25 36-60 24-48 (245)
349 2pez_A Bifunctional 3'-phospho 93.1 0.054 1.8E-06 49.6 3.6 24 37-60 5-28 (179)
350 1z6g_A Guanylate kinase; struc 93.1 0.038 1.3E-06 52.5 2.6 23 38-60 24-46 (218)
351 4a74_A DNA repair and recombin 93.1 0.14 4.9E-06 48.9 6.7 45 36-80 24-72 (231)
352 2pbr_A DTMP kinase, thymidylat 93.0 0.049 1.7E-06 50.7 3.1 22 39-60 2-23 (195)
353 2bbw_A Adenylate kinase 4, AK4 93.0 0.052 1.8E-06 52.8 3.4 24 37-60 27-50 (246)
354 2ffh_A Protein (FFH); SRP54, s 93.0 0.25 8.6E-06 51.7 8.6 38 36-75 97-134 (425)
355 1tue_A Replication protein E1; 92.9 0.054 1.9E-06 49.9 3.1 24 37-60 58-81 (212)
356 3dm5_A SRP54, signal recogniti 92.9 0.39 1.3E-05 50.4 9.9 25 36-60 99-123 (443)
357 4e22_A Cytidylate kinase; P-lo 92.8 0.056 1.9E-06 52.7 3.4 24 37-60 27-50 (252)
358 2vli_A Antibiotic resistance p 92.8 0.035 1.2E-06 51.1 1.8 23 38-60 6-28 (183)
359 3e70_C DPA, signal recognition 92.8 0.3 1E-05 49.3 8.8 26 35-60 127-152 (328)
360 2f6r_A COA synthase, bifunctio 92.8 0.066 2.3E-06 53.1 3.9 23 36-58 74-96 (281)
361 3e1s_A Exodeoxyribonuclease V, 92.8 0.11 3.9E-06 57.1 6.0 23 38-60 205-227 (574)
362 2v54_A DTMP kinase, thymidylat 92.8 0.055 1.9E-06 50.8 3.1 23 38-60 5-27 (204)
363 3zvl_A Bifunctional polynucleo 92.8 0.21 7.1E-06 52.7 7.9 25 36-60 257-281 (416)
364 1q57_A DNA primase/helicase; d 92.8 0.24 8.3E-06 53.8 8.6 52 37-91 242-293 (503)
365 4akg_A Glutathione S-transfera 92.7 0.58 2E-05 60.5 13.0 139 38-186 1268-1431(2695)
366 2z0h_A DTMP kinase, thymidylat 92.7 0.056 1.9E-06 50.4 3.1 22 39-60 2-23 (197)
367 1nn5_A Similar to deoxythymidy 92.7 0.057 1.9E-06 51.2 3.1 24 37-60 9-32 (215)
368 2wwf_A Thymidilate kinase, put 92.7 0.055 1.9E-06 51.1 3.0 24 37-60 10-33 (212)
369 2ga8_A Hypothetical 39.9 kDa p 92.7 0.1 3.4E-06 52.9 4.9 26 35-60 22-47 (359)
370 2xxa_A Signal recognition part 92.7 0.31 1.1E-05 51.4 8.9 42 35-77 98-139 (433)
371 3k1j_A LON protease, ATP-depen 92.6 0.084 2.9E-06 58.9 4.9 44 14-60 40-83 (604)
372 3fb4_A Adenylate kinase; psych 92.6 0.057 2E-06 51.2 3.1 22 39-60 2-23 (216)
373 1ls1_A Signal recognition part 92.6 0.23 8E-06 49.5 7.6 39 36-76 97-135 (295)
374 1aky_A Adenylate kinase; ATP:A 92.6 0.062 2.1E-06 51.2 3.2 23 38-60 5-27 (220)
375 1rj9_A FTSY, signal recognitio 92.5 0.07 2.4E-06 53.4 3.6 25 36-60 101-125 (304)
376 3dl0_A Adenylate kinase; phosp 92.5 0.061 2.1E-06 51.0 3.1 22 39-60 2-23 (216)
377 2onk_A Molybdate/tungstate ABC 92.5 0.068 2.3E-06 51.5 3.4 25 35-60 23-47 (240)
378 1g41_A Heat shock protein HSLU 92.5 0.049 1.7E-06 57.2 2.5 47 14-60 14-73 (444)
379 2i3b_A HCR-ntpase, human cance 92.5 0.057 1.9E-06 49.8 2.7 22 39-60 3-24 (189)
380 3kl4_A SRP54, signal recogniti 92.5 0.36 1.2E-05 50.6 9.0 39 36-76 96-134 (433)
381 3hjn_A DTMP kinase, thymidylat 92.4 0.19 6.5E-06 46.6 6.2 22 40-61 3-24 (197)
382 1zd8_A GTP:AMP phosphotransfer 92.3 0.063 2.2E-06 51.4 2.9 23 38-60 8-30 (227)
383 1vht_A Dephospho-COA kinase; s 92.3 0.083 2.8E-06 50.2 3.7 22 38-59 5-26 (218)
384 1np6_A Molybdopterin-guanine d 92.3 0.072 2.5E-06 48.3 3.1 25 36-60 5-29 (174)
385 2f1r_A Molybdopterin-guanine d 92.3 0.044 1.5E-06 49.6 1.6 23 38-60 3-25 (171)
386 3end_A Light-independent proto 92.3 0.11 3.9E-06 52.3 4.9 44 34-79 38-81 (307)
387 3tlx_A Adenylate kinase 2; str 92.3 0.082 2.8E-06 51.2 3.7 25 36-60 28-52 (243)
388 3lnc_A Guanylate kinase, GMP k 92.2 0.048 1.6E-06 52.4 2.0 23 38-60 28-51 (231)
389 1m7g_A Adenylylsulfate kinase; 92.2 0.082 2.8E-06 49.9 3.6 24 37-60 25-48 (211)
390 2qmh_A HPR kinase/phosphorylas 92.2 0.082 2.8E-06 48.4 3.3 23 38-60 35-57 (205)
391 3nwj_A ATSK2; P loop, shikimat 92.2 0.058 2E-06 52.3 2.4 23 38-60 49-71 (250)
392 2ehv_A Hypothetical protein PH 92.1 0.075 2.6E-06 51.7 3.2 23 37-59 30-52 (251)
393 3a8t_A Adenylate isopentenyltr 92.1 0.1 3.5E-06 52.5 4.1 24 37-60 40-63 (339)
394 1j8m_F SRP54, signal recogniti 92.1 0.24 8.1E-06 49.4 6.9 87 37-125 98-189 (297)
395 3cmu_A Protein RECA, recombina 92.1 0.14 4.7E-06 63.7 6.1 84 36-126 1426-1515(2050)
396 1gtv_A TMK, thymidylate kinase 92.1 0.037 1.3E-06 52.4 0.9 22 39-60 2-23 (214)
397 3tif_A Uncharacterized ABC tra 92.0 0.076 2.6E-06 51.0 3.1 34 37-73 31-64 (235)
398 2qe7_A ATP synthase subunit al 92.0 0.16 5.3E-06 53.7 5.6 84 38-125 163-263 (502)
399 3exa_A TRNA delta(2)-isopenten 92.0 0.093 3.2E-06 52.0 3.7 23 38-60 4-26 (322)
400 3b5x_A Lipid A export ATP-bind 92.0 0.78 2.7E-05 50.7 11.7 23 38-60 370-392 (582)
401 1zak_A Adenylate kinase; ATP:A 92.0 0.066 2.2E-06 51.1 2.6 23 38-60 6-28 (222)
402 3ake_A Cytidylate kinase; CMP 92.0 0.078 2.7E-06 49.9 3.1 22 39-60 4-25 (208)
403 3d3q_A TRNA delta(2)-isopenten 92.0 0.081 2.8E-06 53.3 3.3 23 38-60 8-30 (340)
404 2pcj_A ABC transporter, lipopr 92.0 0.076 2.6E-06 50.6 3.0 23 38-60 31-53 (224)
405 1sq5_A Pantothenate kinase; P- 91.9 0.098 3.3E-06 52.7 3.9 26 35-60 78-103 (308)
406 3r20_A Cytidylate kinase; stru 91.9 0.085 2.9E-06 50.3 3.1 23 38-60 10-32 (233)
407 3b9q_A Chloroplast SRP recepto 91.7 0.11 3.6E-06 52.1 3.9 25 36-60 99-123 (302)
408 3be4_A Adenylate kinase; malar 91.7 0.075 2.6E-06 50.4 2.6 23 38-60 6-28 (217)
409 3b85_A Phosphate starvation-in 91.6 0.071 2.4E-06 50.0 2.3 23 38-60 23-45 (208)
410 3f9v_A Minichromosome maintena 91.6 0.087 3E-06 58.4 3.3 48 13-60 293-350 (595)
411 3gfo_A Cobalt import ATP-bindi 91.5 0.093 3.2E-06 51.6 3.1 23 38-60 35-57 (275)
412 1a7j_A Phosphoribulokinase; tr 91.5 0.049 1.7E-06 54.3 1.1 25 36-60 4-28 (290)
413 1sgw_A Putative ABC transporte 91.5 0.078 2.7E-06 50.0 2.4 23 38-60 36-58 (214)
414 3crm_A TRNA delta(2)-isopenten 91.5 0.1 3.5E-06 52.3 3.3 23 38-60 6-28 (323)
415 2r9v_A ATP synthase subunit al 91.5 0.18 6.2E-06 53.3 5.4 84 38-125 176-276 (515)
416 2xb4_A Adenylate kinase; ATP-b 91.5 0.097 3.3E-06 49.9 3.1 22 39-60 2-23 (223)
417 1e4v_A Adenylate kinase; trans 91.5 0.09 3.1E-06 49.8 2.9 22 39-60 2-23 (214)
418 1b0u_A Histidine permease; ABC 91.4 0.097 3.3E-06 51.2 3.1 24 37-60 32-55 (262)
419 2r6a_A DNAB helicase, replicat 91.4 0.46 1.6E-05 50.8 8.7 50 37-89 203-252 (454)
420 1mv5_A LMRA, multidrug resista 91.4 0.11 3.6E-06 50.3 3.4 24 37-60 28-51 (243)
421 2olj_A Amino acid ABC transpor 91.4 0.096 3.3E-06 51.2 3.0 23 38-60 51-73 (263)
422 2j9r_A Thymidine kinase; TK1, 91.4 0.17 5.9E-06 47.0 4.5 110 37-157 28-139 (214)
423 4g1u_C Hemin import ATP-bindin 91.3 0.1 3.5E-06 51.1 3.1 23 38-60 38-60 (266)
424 2d2e_A SUFC protein; ABC-ATPas 91.3 0.1 3.6E-06 50.6 3.2 23 38-60 30-52 (250)
425 1ji0_A ABC transporter; ATP bi 91.3 0.1 3.5E-06 50.3 3.1 23 38-60 33-55 (240)
426 2ff7_A Alpha-hemolysin translo 91.2 0.1 3.4E-06 50.6 3.0 23 38-60 36-58 (247)
427 1g6h_A High-affinity branched- 91.2 0.1 3.5E-06 50.9 3.1 23 38-60 34-56 (257)
428 1fx0_A ATP synthase alpha chai 91.2 0.17 5.7E-06 53.6 4.7 84 38-125 164-264 (507)
429 2hf9_A Probable hydrogenase ni 91.2 0.12 4.1E-06 49.3 3.4 26 35-60 36-61 (226)
430 2zu0_C Probable ATP-dependent 91.1 0.12 4E-06 50.8 3.4 23 38-60 47-69 (267)
431 3foz_A TRNA delta(2)-isopenten 91.1 0.14 4.7E-06 50.7 3.8 25 36-60 9-33 (316)
432 1vpl_A ABC transporter, ATP-bi 91.1 0.11 3.7E-06 50.5 3.1 23 38-60 42-64 (256)
433 3llm_A ATP-dependent RNA helic 91.1 0.38 1.3E-05 46.1 7.0 21 38-58 77-97 (235)
434 2dr3_A UPF0273 protein PH0284; 91.1 0.13 4.5E-06 49.8 3.7 38 38-77 24-61 (247)
435 3bgw_A DNAB-like replicative h 91.1 0.53 1.8E-05 49.9 8.6 50 37-90 197-246 (444)
436 1zu4_A FTSY; GTPase, signal re 91.0 0.16 5.5E-06 51.2 4.3 40 35-76 103-142 (320)
437 2ghi_A Transport protein; mult 91.0 0.11 3.7E-06 50.8 3.0 23 38-60 47-69 (260)
438 1ak2_A Adenylate kinase isoenz 91.0 0.12 4.3E-06 49.5 3.4 23 38-60 17-39 (233)
439 2wji_A Ferrous iron transport 90.9 0.15 5.2E-06 45.7 3.7 23 38-60 4-26 (165)
440 2qi9_C Vitamin B12 import ATP- 90.9 0.12 4.1E-06 50.1 3.1 23 38-60 27-49 (249)
441 1ltq_A Polynucleotide kinase; 90.9 0.12 4.1E-06 51.9 3.3 22 38-59 3-24 (301)
442 1yrb_A ATP(GTP)binding protein 90.9 0.16 5.4E-06 49.8 4.1 26 35-60 12-37 (262)
443 2dyk_A GTP-binding protein; GT 90.9 0.15 5E-06 45.4 3.5 23 38-60 2-24 (161)
444 2q6t_A DNAB replication FORK h 90.8 0.6 2.1E-05 49.7 8.9 52 37-91 200-251 (444)
445 1oix_A RAS-related protein RAB 90.8 0.12 4.2E-06 47.8 3.1 23 38-60 30-52 (191)
446 2ixe_A Antigen peptide transpo 90.8 0.11 3.9E-06 51.0 3.0 23 38-60 46-68 (271)
447 2zej_A Dardarin, leucine-rich 90.8 0.12 4.1E-06 47.5 3.0 22 39-60 4-25 (184)
448 2og2_A Putative signal recogni 90.8 0.15 5.1E-06 52.2 3.9 25 36-60 156-180 (359)
449 2eyu_A Twitching motility prot 90.7 0.16 5.3E-06 49.7 3.8 25 36-60 24-48 (261)
450 2nq2_C Hypothetical ABC transp 90.7 0.13 4.3E-06 50.1 3.1 23 38-60 32-54 (253)
451 2ihy_A ABC transporter, ATP-bi 90.7 0.13 4.3E-06 50.8 3.1 23 38-60 48-70 (279)
452 2r8r_A Sensor protein; KDPD, P 90.7 0.34 1.2E-05 45.5 5.8 39 38-78 7-45 (228)
453 2j37_W Signal recognition part 90.6 0.91 3.1E-05 48.7 9.9 26 35-60 99-124 (504)
454 2wsm_A Hydrogenase expression/ 90.6 0.14 4.9E-06 48.6 3.4 26 35-60 28-53 (221)
455 2yz2_A Putative ABC transporte 90.6 0.13 4.4E-06 50.5 3.1 23 38-60 34-56 (266)
456 2v9p_A Replication protein E1; 90.6 0.14 4.8E-06 51.0 3.3 25 36-60 125-149 (305)
457 3l0o_A Transcription terminati 90.5 0.11 3.7E-06 52.8 2.5 39 38-77 176-215 (427)
458 3oaa_A ATP synthase subunit al 90.5 0.2 6.8E-06 52.7 4.5 84 38-125 163-263 (513)
459 1cp2_A CP2, nitrogenase iron p 90.4 0.21 7.1E-06 49.2 4.5 40 38-79 2-41 (269)
460 2vp4_A Deoxynucleoside kinase; 90.4 0.14 4.7E-06 49.1 3.1 25 36-60 19-43 (230)
461 1q3t_A Cytidylate kinase; nucl 90.4 0.15 5E-06 49.1 3.3 25 36-60 15-39 (236)
462 2ged_A SR-beta, signal recogni 90.3 0.22 7.4E-06 46.0 4.4 25 36-60 47-71 (193)
463 3cmu_A Protein RECA, recombina 90.3 0.37 1.2E-05 60.1 7.3 85 36-127 382-472 (2050)
464 2ck3_A ATP synthase subunit al 90.3 0.3 1E-05 51.7 5.7 88 38-125 163-271 (510)
465 3rfe_A Platelet glycoprotein I 90.3 0.36 1.2E-05 41.2 5.3 53 460-515 11-66 (130)
466 1pgv_A TMD-1, tropomodulin TMD 90.3 0.37 1.3E-05 44.3 5.6 92 416-514 31-136 (197)
467 4eaq_A DTMP kinase, thymidylat 90.2 0.18 6.2E-06 48.2 3.7 26 36-61 25-50 (229)
468 1svm_A Large T antigen; AAA+ f 90.2 0.16 5.5E-06 52.4 3.5 26 35-60 167-192 (377)
469 3vkw_A Replicase large subunit 90.2 0.79 2.7E-05 47.9 8.7 26 34-59 158-183 (446)
470 2f9l_A RAB11B, member RAS onco 90.2 0.16 5.5E-06 47.3 3.3 23 38-60 6-28 (199)
471 3sop_A Neuronal-specific septi 90.0 0.15 5.2E-06 50.0 3.1 22 39-60 4-25 (270)
472 3mfy_A V-type ATP synthase alp 90.0 0.8 2.7E-05 48.8 8.5 47 38-88 228-275 (588)
473 3gqb_B V-type ATP synthase bet 90.0 0.22 7.5E-06 51.9 4.3 88 38-125 148-260 (464)
474 3vr4_D V-type sodium ATPase su 90.0 0.45 1.5E-05 49.7 6.6 86 38-125 152-257 (465)
475 3tqf_A HPR(Ser) kinase; transf 90.0 0.18 6.3E-06 44.8 3.2 23 38-60 17-39 (181)
476 2pjz_A Hypothetical protein ST 89.9 0.16 5.5E-06 49.5 3.1 23 38-60 31-53 (263)
477 2c61_A A-type ATP synthase non 89.9 0.23 7.8E-06 52.2 4.4 88 38-125 153-258 (469)
478 2yhs_A FTSY, cell division pro 89.8 0.2 6.8E-06 53.2 3.9 25 36-60 292-316 (503)
479 2wjg_A FEOB, ferrous iron tran 89.8 0.25 8.7E-06 45.3 4.3 24 37-60 7-30 (188)
480 3qf4_A ABC transporter, ATP-bi 89.8 0.92 3.1E-05 50.2 9.5 23 38-60 370-392 (587)
481 1nlf_A Regulatory protein REPA 89.8 0.15 5.2E-06 50.5 2.9 23 38-60 31-53 (279)
482 1u0j_A DNA replication protein 89.7 0.2 6.7E-06 48.5 3.5 26 35-60 102-127 (267)
483 2afh_E Nitrogenase iron protei 89.7 0.25 8.6E-06 49.2 4.5 40 38-79 3-42 (289)
484 3kta_A Chromosome segregation 89.6 0.19 6.4E-06 46.0 3.2 22 38-59 27-48 (182)
485 2nzj_A GTP-binding protein REM 89.6 0.2 6.8E-06 45.3 3.3 23 38-60 5-27 (175)
486 3nh6_A ATP-binding cassette SU 89.5 0.13 4.6E-06 51.3 2.3 24 37-60 80-103 (306)
487 2lkc_A Translation initiation 89.5 0.25 8.4E-06 44.8 3.9 25 36-60 7-31 (178)
488 1cr0_A DNA primase/helicase; R 89.4 0.18 6.2E-06 50.5 3.1 38 38-76 36-73 (296)
489 4edh_A DTMP kinase, thymidylat 89.4 0.48 1.7E-05 44.5 5.9 24 38-61 7-30 (213)
490 2ocp_A DGK, deoxyguanosine kin 89.4 0.2 7E-06 48.3 3.4 23 38-60 3-25 (241)
491 2fz4_A DNA repair protein RAD2 89.3 1.2 3.9E-05 42.7 8.7 101 40-154 111-227 (237)
492 3eph_A TRNA isopentenyltransfe 89.3 0.19 6.4E-06 51.8 3.1 23 38-60 3-25 (409)
493 2ce2_X GTPase HRAS; signaling 89.3 0.18 6.2E-06 44.9 2.8 22 39-60 5-26 (166)
494 2bbs_A Cystic fibrosis transme 89.2 0.17 5.9E-06 50.1 2.8 23 38-60 65-87 (290)
495 1xx6_A Thymidine kinase; NESG, 89.2 0.11 3.7E-06 47.9 1.2 110 37-157 8-119 (191)
496 3io3_A DEHA2D07832P; chaperone 89.2 0.27 9.3E-06 50.1 4.3 44 35-78 16-59 (348)
497 3p32_A Probable GTPase RV1496/ 89.1 0.25 8.6E-06 50.8 4.1 26 35-60 77-102 (355)
498 1nij_A Hypothetical protein YJ 89.1 0.17 5.9E-06 51.1 2.8 25 36-60 3-27 (318)
499 2gj8_A MNME, tRNA modification 89.1 0.21 7.2E-06 45.2 3.1 23 38-60 5-27 (172)
500 3fvq_A Fe(3+) IONS import ATP- 89.1 0.2 6.7E-06 51.2 3.1 23 38-60 31-53 (359)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.8e-44 Score=401.48 Aligned_cols=313 Identities=19% Similarity=0.264 Sum_probs=248.0
Q ss_pred cccHHHHHHHhcccCC--CCCcEEEEEEcCCCCcHHHHHHHHHc--CccccccCCeEEEEEeCCcC--CHHHHHHHHHHH
Q 003773 18 EGLDDDNTLALASSEQ--QKGLRIISLFGLGGIGKTTLAQLAFN--NEGVKRKFDIVIWVCVSDAF--EEIRIAKAILEV 91 (796)
Q Consensus 18 vGr~~~~~~l~~~~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~ 91 (796)
|||+++++.+.+.+.. ++..++|+|+||||+||||||+++|+ +.+.+.+|+.++||+++... +...+++.|+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 5999999977666532 34679999999999999999999997 55688999999999999875 789999999999
Q ss_pred hccCCC-------CCccHHHHHHHHHHHhCCc-eEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecchhhhhccC
Q 003773 92 LDKSAS-------SLGEFQSLMQQTQESIRGK-KFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDRSVALQMG 163 (796)
Q Consensus 92 l~~~~~-------~~~~~~~~~~~~~~~l~~~-~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~~~~~~~ 163 (796)
++.... ...+.+.+...+++.+.++ |+||||||||+.+...|.. .+||+||||||++.++..+.
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGGGCC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHHHcC
Confidence 976421 1224456788899999996 9999999998743222221 27899999999999988765
Q ss_pred -ccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHHHHHhcCCCHHHHHHHHhhhhcc
Q 003773 164 -SIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLLRSKRTVSEWQRILDSEMWK 242 (796)
Q Consensus 164 -~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w~~~l~~~~~~ 242 (796)
....|++++|+.+||++||.+.++.... ++...+++.+|+++|+|+||||+++|+.++.+ . .+|...+....+.
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~---~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~l~~ 357 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNKLES 357 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHHHHH
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHHhhc
Confidence 3468999999999999999999875431 45678889999999999999999999999765 3 2333444433332
Q ss_pred ccccCCCccchhhhhccCCCChhhhhhHHh-----------hhcCCCCCceecHHHHHHHHHHc--CCcCCCC-ChhHHH
Q 003773 243 VEEIGKGLLPPLLLSYNDLPSSSMVKRCFS-----------YCSVFPKDYNIRKEELITLWMAQ--CYLNSEE-DEEMEI 308 (796)
Q Consensus 243 ~~~~~~~~~~~l~~s~~~L~~~~~~k~~fl-----------~~~~fp~~~~i~~~~Li~~wia~--g~i~~~~-~~~~~~ 308 (796)
. ....+.+.+.+||+.||. ++|.||+ |||+||+++.|+ +..|+|+ ||+.... +...++
T Consensus 358 ~--~~~~i~~~l~~Sy~~L~~--~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~ 429 (549)
T 2a5y_B 358 R--GLVGVECITPYSYKSLAM--ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDE 429 (549)
T ss_dssp H--CSSTTCCCSSSSSSSHHH--HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHH
T ss_pred c--cHHHHHHHHhcccccccH--HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHH
Confidence 2 345689999999999988 9999999 999999999998 8899999 9998665 455677
Q ss_pred HHHHHHHHHHhccccccccccCCCCeeeEEecHHHHHHHHHhhccce
Q 003773 309 IGEEYFNILATRSFFQEFVKDYDDNVMSCKMHDIVHDFAQLVSREEC 355 (796)
Q Consensus 309 ~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~h~lv~~~~~~i~~~~~ 355 (796)
+++ ++++|+++++++....+ ...+|+|||+++++++.++.+++
T Consensus 430 ~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 430 VAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp HHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHH
Confidence 777 99999999999876543 34579999999999999887764
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.2e-36 Score=338.91 Aligned_cols=284 Identities=19% Similarity=0.202 Sum_probs=221.8
Q ss_pred ccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCe-EEEEEeCCcCCHHHHHHHHHHHhccC
Q 003773 17 IEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDI-VIWVCVSDAFEEIRIAKAILEVLDKS 95 (796)
Q Consensus 17 ~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~ 95 (796)
.|||+++++.+.+.+...+..++|+|+||||+||||||+++|++.+.+.+|+. ++|+++++..+...++..+++.++..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 49999999977766543345789999999999999999999987667888986 99999999988888888888765431
Q ss_pred C---C-C-------CccHHHHHHHHHHHh---CCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecchhhhhc
Q 003773 96 A---S-S-------LGEFQSLMQQTQESI---RGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDRSVALQ 161 (796)
Q Consensus 96 ~---~-~-------~~~~~~~~~~~~~~l---~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~~~~~ 161 (796)
. . . ..+.+.....+++.+ .++|+||||||+|+ .+.|..+ + +||+||||||++.++..
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~f----~---pGSRILVTTRd~~Va~~ 280 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAF----N---LSCKILLTTRFKQVTDF 280 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHHH----H---SSCCEEEECSCSHHHHH
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHhh----C---CCeEEEEeccChHHHHh
Confidence 1 0 0 113344556666655 78999999999987 3444433 2 78999999999988754
Q ss_pred cCccceEEcc------CCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHHHHHhcCC-CHHHHHH
Q 003773 162 MGSIDIISVK------ELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLLRSKR-TVSEWQR 234 (796)
Q Consensus 162 ~~~~~~~~l~------~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~-~~~~w~~ 234 (796)
+.....++++ +|+.+||++||++.. +.. ..++..++ |+|+||||+++|+.|+.+. +.++|..
T Consensus 281 l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~ 349 (1221)
T 1vt4_I 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKH 349 (1221)
T ss_dssp HHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred cCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhc
Confidence 4433456666 899999999999884 221 12333343 9999999999999999874 6778875
Q ss_pred HHhhhhccccccCCCccchhhhhccCCCChhhh-hhHHhhhcCCCCCceecHHHHHHHHHHcCCcCCCCChhHHHHHHHH
Q 003773 235 ILDSEMWKVEEIGKGLLPPLLLSYNDLPSSSMV-KRCFSYCSVFPKDYNIRKEELITLWMAQCYLNSEEDEEMEIIGEEY 313 (796)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~-k~~fl~~~~fp~~~~i~~~~Li~~wia~g~i~~~~~~~~~~~~~~~ 313 (796)
. ....+...+..||+.||+ +. |.||++||+||+++.|+++.++..|+++|. +.++.+
T Consensus 350 ~----------~~~~I~aaLelSYd~Lp~--eelK~cFL~LAIFPed~~I~~elLa~LW~aeGe----------edAe~~ 407 (1221)
T 1vt4_I 350 V----------NCDKLTTIIESSLNVLEP--AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK----------SDVMVV 407 (1221)
T ss_dssp C----------SCHHHHHHHHHHHHHSCT--THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS----------HHHHHH
T ss_pred C----------ChhHHHHHHHHHHHhCCH--HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH----------HHHHHH
Confidence 3 124578899999999999 78 999999999999999999999999998771 247889
Q ss_pred HHHHHhccccccccccCCCCeeeEEecHHHHHHH
Q 003773 314 FNILATRSFFQEFVKDYDDNVMSCKMHDIVHDFA 347 (796)
Q Consensus 314 l~~L~~~~ll~~~~~~~~~~~~~~~~h~lv~~~~ 347 (796)
+++|+++++++.. +....|+||++++++.
T Consensus 408 L~eLvdRSLLq~d-----~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 408 VNKLHKYSLVEKQ-----PKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHTSSSSSBC-----SSSSEEBCCCHHHHHH
T ss_pred HHHHHhhCCEEEe-----CCCCEEEehHHHHHHh
Confidence 9999999999863 2234689999998854
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.6e-34 Score=354.68 Aligned_cols=317 Identities=22% Similarity=0.281 Sum_probs=245.7
Q ss_pred hhhccccccCcccccHHHHHHHhcccC-CCCCcEEEEEEcCCCCcHHHHHHHHHcCccc-cc-cCCeEEEEEeCCcCC--
Q 003773 6 EEWTTARLKLQIEGLDDDNTLALASSE-QQKGLRIISLFGLGGIGKTTLAQLAFNNEGV-KR-KFDIVIWVCVSDAFE-- 80 (796)
Q Consensus 6 ~~~~~~~~~~~~vGr~~~~~~l~~~~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~~-~f~~~~wv~~~~~~~-- 80 (796)
..-..|+.+..||||+++++.+.+.+. .+++.++|+|+||||+||||||+++|++.+. .. .|+.++|++++....
T Consensus 115 ~~~~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 194 (1249)
T 3sfz_A 115 CEGGVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSG 194 (1249)
T ss_dssp HHTTCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHH
T ss_pred ccCCCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchH
Confidence 334456677889999999997776652 2357899999999999999999999998543 33 347899999988543
Q ss_pred HHHHHHHHHHHhccCC----CCCccHHHHHHHHHHHhCCc--eEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEec
Q 003773 81 EIRIAKAILEVLDKSA----SSLGEFQSLMQQTQESIRGK--KFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTR 154 (796)
Q Consensus 81 ~~~~~~~i~~~l~~~~----~~~~~~~~~~~~~~~~l~~~--~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr 154 (796)
....+..++..+.... ....+.++....++..+.++ |+||||||+|+. ..| ....+|++||||||
T Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~-------~~~~~~~~ilvTtR 265 (1249)
T 3sfz_A 195 LLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVL-------KAFDNQCQILLTTR 265 (1249)
T ss_dssp HHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHH-------TTTCSSCEEEEEES
T ss_pred HHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHH-------HhhcCCCEEEEEcC
Confidence 3444666777776432 22346777888888888877 999999999863 222 22367899999999
Q ss_pred chhhhhc-cCccceEEccC-CChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHHHHHhcCCCHHHH
Q 003773 155 DRSVALQ-MGSIDIISVKE-LGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLLRSKRTVSEW 232 (796)
Q Consensus 155 ~~~~~~~-~~~~~~~~l~~-l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w 232 (796)
++.++.. ......+++.+ |+.+||++||...++.. .+...+.+++|+++|+|+||||+++|++|+.+. ..|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~ 338 (1249)
T 3sfz_A 266 DKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRW 338 (1249)
T ss_dssp STTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCH
T ss_pred CHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHH
Confidence 9998854 45567899996 99999999999988422 233456799999999999999999999998864 357
Q ss_pred HHHHhhhhccc----ccc----CCCccchhhhhccCCCChhhhhhHHhhhcCCCCCceecHHHHHHHHHHcCCcCCCCCh
Q 003773 233 QRILDSEMWKV----EEI----GKGLLPPLLLSYNDLPSSSMVKRCFSYCSVFPKDYNIRKEELITLWMAQCYLNSEEDE 304 (796)
Q Consensus 233 ~~~l~~~~~~~----~~~----~~~~~~~l~~s~~~L~~~~~~k~~fl~~~~fp~~~~i~~~~Li~~wia~g~i~~~~~~ 304 (796)
...++...... ... ...+..++.+||+.|++ +.|.||+|||+||+++.|+++.++..|.++
T Consensus 339 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~--~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~--------- 407 (1249)
T 3sfz_A 339 AYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE--DIKDYYTDLSILQKDVKVPTKVLCVLWDLE--------- 407 (1249)
T ss_dssp HHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT--TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC---------
T ss_pred HHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCH--HHHHHHHHhCccCCCCeeCHHHHHHHhCCC---------
Confidence 66665433221 111 12478889999999999 899999999999999999999999999653
Q ss_pred hHHHHHHHHHHHHHhccccccccccCCCCeeeEEecHHHHHHHHHhhccc
Q 003773 305 EMEIIGEEYFNILATRSFFQEFVKDYDDNVMSCKMHDIVHDFAQLVSREE 354 (796)
Q Consensus 305 ~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~h~lv~~~~~~i~~~~ 354 (796)
.+.+++++++|+++++++... ++...+|+||++++++++....++
T Consensus 408 --~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 --TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp --HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred --HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 356789999999999998543 344557999999999999887655
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=2e-32 Score=311.20 Aligned_cols=311 Identities=21% Similarity=0.265 Sum_probs=232.0
Q ss_pred hhccccccCcccccHHHHHHHhcccCC-CCCcEEEEEEcCCCCcHHHHHHHHHcCccc-cccC-CeEEEEEeCCcCCHHH
Q 003773 7 EWTTARLKLQIEGLDDDNTLALASSEQ-QKGLRIISLFGLGGIGKTTLAQLAFNNEGV-KRKF-DIVIWVCVSDAFEEIR 83 (796)
Q Consensus 7 ~~~~~~~~~~~vGr~~~~~~l~~~~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~~~f-~~~~wv~~~~~~~~~~ 83 (796)
....|+.+..||||+++++.+.+.+.. .+..++|+|+|+||+||||||.+++++... ..+| +.++|++++.. +...
T Consensus 116 ~~~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~ 194 (591)
T 1z6t_A 116 EGGVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSG 194 (591)
T ss_dssp HTTCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHH
T ss_pred cCCCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHH
Confidence 345577788899999999977766532 345789999999999999999999998555 6789 58999998765 3333
Q ss_pred HHHHH---HHHhccC----CCCCccHHHHHHHHHHHhCC--ceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEec
Q 003773 84 IAKAI---LEVLDKS----ASSLGEFQSLMQQTQESIRG--KKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTR 154 (796)
Q Consensus 84 ~~~~i---~~~l~~~----~~~~~~~~~~~~~~~~~l~~--~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr 154 (796)
+...+ +..++.. .....+.+.....+...+.+ +++||||||+|+. . .+ ....+|++||||||
T Consensus 195 ~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~---~l----~~l~~~~~ilvTsR 265 (591)
T 1z6t_A 195 LLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--W---VL----KAFDSQCQILLTTR 265 (591)
T ss_dssp HHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--H---HH----HTTCSSCEEEEEES
T ss_pred HHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--H---HH----HHhcCCCeEEEECC
Confidence 43333 3444421 12334566677777777765 7899999999752 1 11 12357899999999
Q ss_pred chhhhhccCccceEEc---cCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHHHHHhcCCCHHH
Q 003773 155 DRSVALQMGSIDIISV---KELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLLRSKRTVSE 231 (796)
Q Consensus 155 ~~~~~~~~~~~~~~~l---~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~ 231 (796)
++.++..+. ...+++ .+|+.+|+++||...++.. .....+.+.+|+++|+|+||||+++|+.++... ..
T Consensus 266 ~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~ 337 (591)
T 1z6t_A 266 DKSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NR 337 (591)
T ss_dssp CGGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TC
T ss_pred CcHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hh
Confidence 998776543 234444 5899999999999988531 122345689999999999999999999998763 36
Q ss_pred HHHHHhhhhcccc--------ccCCCccchhhhhccCCCChhhhhhHHhhhcCCCCCceecHHHHHHHHHHcCCcCCCCC
Q 003773 232 WQRILDSEMWKVE--------EIGKGLLPPLLLSYNDLPSSSMVKRCFSYCSVFPKDYNIRKEELITLWMAQCYLNSEED 303 (796)
Q Consensus 232 w~~~l~~~~~~~~--------~~~~~~~~~l~~s~~~L~~~~~~k~~fl~~~~fp~~~~i~~~~Li~~wia~g~i~~~~~ 303 (796)
|...++....... .....+...+..||+.||+ ..|.||+++|+||+++.|+...+...|.++
T Consensus 338 w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~--~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------- 407 (591)
T 1z6t_A 338 WEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE--DIKDYYTDLSILQKDVKVPTKVLCILWDME-------- 407 (591)
T ss_dssp HHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT--TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC--------
T ss_pred HHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCH--HHHHHHHHccccCCCCccCHHHHHHHhccC--------
Confidence 7776665332211 1112467789999999999 899999999999999999999999999642
Q ss_pred hhHHHHHHHHHHHHHhccccccccccCCCCeeeEEecHHHHHHHHHhh
Q 003773 304 EEMEIIGEEYFNILATRSFFQEFVKDYDDNVMSCKMHDIVHDFAQLVS 351 (796)
Q Consensus 304 ~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~h~lv~~~~~~i~ 351 (796)
.+.+..++..|++++++.... ++....|+||+++++++....
T Consensus 408 ---~~~~~~~l~~L~~~~Ll~~~~---~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 408 ---TEEVEDILQEFVNKSLLFCDR---NGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp ---HHHHHHHHHHHHHTTSSEEEE---ETTEEEEECCHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHhCcCeEEec---CCCccEEEEcHHHHHHHHhhh
Confidence 234688999999999998532 244457999999999998763
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=1.5e-27 Score=278.83 Aligned_cols=345 Identities=19% Similarity=0.186 Sum_probs=215.6
Q ss_pred HHhhhcCcccceeeecccccCCCccccc-cccccc-ccCccccceEecCCCCcc-ccchhhhccC-CccEeecccccccc
Q 003773 419 VELFSKVACLRALVIRQWFVPLDDQNFI-REIPEN-IGKLIHLKYLNLSELCIE-RLPETLCELY-NLQKLAVRWCTNLR 494 (796)
Q Consensus 419 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~lp~~-~~~l~~L~~L~l~~~~i~-~lp~~i~~l~-~L~~L~l~~~~~~~ 494 (796)
+..|.++++|++|+++ ++.+ ..+|.. ++.+++|++|++++|.+. .+|..+.++. +|++|++++|....
T Consensus 311 p~~~~~l~~L~~L~L~--------~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~ 382 (768)
T 3rgz_A 311 PPFFGSCSLLESLALS--------SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382 (768)
T ss_dssp CGGGGGCTTCCEEECC--------SSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEE
T ss_pred chHHhcCCCccEEECC--------CCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCC
Confidence 3446667777777777 3333 366654 677777777777777766 6777777776 77777777776555
Q ss_pred ccchhhcc--ccCCCeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCC
Q 003773 495 ELPAGIGK--LMNMRSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSH 572 (796)
Q Consensus 495 ~lp~~~~~--l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~ 572 (796)
.+|..+.. +++|++|++++|.....+|..++++++|+.|+ ...+...+..+..+. .+++|+.+.+.+..
T Consensus 383 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~--Ls~N~l~~~~p~~l~---~l~~L~~L~L~~n~---- 453 (768)
T 3rgz_A 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH--LSFNYLSGTIPSSLG---SLSKLRDLKLWLNM---- 453 (768)
T ss_dssp ECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEE--CCSSEEESCCCGGGG---GCTTCCEEECCSSC----
T ss_pred CcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEE--CcCCcccCcccHHHh---cCCCCCEEECCCCc----
Confidence 66666655 67777777777765557777777888888776 333433333344443 34444555554432
Q ss_pred hhhhhhccccccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCC-CCCchhhhccCCcEE
Q 003773 573 VDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGN-IFPKWLTLLTNLREL 651 (796)
Q Consensus 573 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L 651 (796)
+.......+..+++|+.|+++.|.+.+. ++..+..+++|+.|++++|... .+|.+++.+++|++|
T Consensus 454 l~~~~p~~~~~l~~L~~L~L~~N~l~~~--------------~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 519 (768)
T 3rgz_A 454 LEGEIPQELMYVKTLETLILDFNDLTGE--------------IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCCSC--------------CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred ccCcCCHHHcCCCCceEEEecCCcccCc--------------CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEE
Confidence 1222233466778888888888875432 2345667788999999998877 678888899999999
Q ss_pred EEcCCCCCCCCCc-cccc-cccceeccccccceEeCccccCCCCCCccC-------------------------------
Q 003773 652 KLFSCVNCEHLPP-LGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDD------------------------------- 698 (796)
Q Consensus 652 ~L~~~~~~~~lp~-l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~------------------------------- 698 (796)
+|++|...+.+|. ++.+ +|+.|++++|.....++..+..........
T Consensus 520 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (768)
T 3rgz_A 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599 (768)
T ss_dssp ECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTC
T ss_pred ECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccc
Confidence 9999977767776 7778 899999988775545554332211000000
Q ss_pred ------------------C----CCCCcccCCCccceeeccccc------------------cccccccccccccccCCC
Q 003773 699 ------------------T----SSSSSVIAFPKLKSLKIEDLD------------------ELEEWNYRVTRKENISIM 738 (796)
Q Consensus 699 ------------------~----~~~~~~~~~~~L~~L~l~~~~------------------~L~~~~~~~~~~~~~~~l 738 (796)
. .....++.+++|+.|+++++. +|.++.+++.+|..++.+
T Consensus 600 ~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L 679 (768)
T 3rgz_A 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679 (768)
T ss_dssp CGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred cchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC
Confidence 0 000112223344444443321 344456677778899999
Q ss_pred CccceeeccCCCCCCCCCcCCCCCCCccEEEEcCCCchhh---------------------------cc---CCCCcccc
Q 003773 739 PRLSSLEIDCCSKLNVLPDHLLQTTTLQELSIRGCPILEE---------------------------RY---RGEDYHMI 788 (796)
Q Consensus 739 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~---------------------------~~---~~~~~~~i 788 (796)
++|+.|+|++|.....+|..+..+++|++|++++|+.-.. .| .+++|++|
T Consensus 680 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~ 759 (768)
T 3rgz_A 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHH 759 (768)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC-------
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCC
Confidence 9999999999977778999999999999999998854221 23 26899999
Q ss_pred cCCCCC
Q 003773 789 SHIPHI 794 (796)
Q Consensus 789 ~~~~~~ 794 (796)
+|+|++
T Consensus 760 ~~~~~~ 765 (768)
T 3rgz_A 760 QRSHHH 765 (768)
T ss_dssp ------
T ss_pred CCcccc
Confidence 999875
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=1.4e-25 Score=262.15 Aligned_cols=396 Identities=19% Similarity=0.125 Sum_probs=201.0
Q ss_pred CCceEEEEEeecCCCCCCCCCCCCCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccC------------
Q 003773 372 GEKVRHLGLNFEGGASFPMSTPEFNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVP------------ 439 (796)
Q Consensus 372 ~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------------ 439 (796)
...++.+.+..+...... +.+.+++.|+.++++. +. .....+..+.++++|++|+++++.+.
T Consensus 199 l~~L~~L~Ls~n~l~~~~---~~l~~l~~L~~L~Ls~--n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~ 272 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGI---PFLGDCSALQHLDISG--NK-LSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQ 272 (768)
T ss_dssp CTTCCEEECCSSCCCSCC---CBCTTCCSCCEEECCS--SC-CCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCC
T ss_pred CCcCCEEECcCCcCCCCC---cccccCCCCCEEECcC--Cc-CCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCC
Confidence 567888888877765322 2255566666666652 22 23334556888899999998864221
Q ss_pred ---CCcccccccccccccCc-cccceEecCCCCcc-ccchhhhccCCccEeeccccccccccchh-hccccCCCeeecCC
Q 003773 440 ---LDDQNFIREIPENIGKL-IHLKYLNLSELCIE-RLPETLCELYNLQKLAVRWCTNLRELPAG-IGKLMNMRSLMNGQ 513 (796)
Q Consensus 440 ---~~~~~~~~~lp~~~~~l-~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~ 513 (796)
+..+.....+|..++.+ ++|++|++++|.++ .+|..++++++|++|++++|.....+|.. +..+++|++|++++
T Consensus 273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352 (768)
T ss_dssp EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence 11111122344444443 55555555555544 44555555555555555555533345543 55555555555555
Q ss_pred ccccccCcccCCCCC-CcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhccccccccccceEE
Q 003773 514 TEKLKYLPIGISRLT-SLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLHL 592 (796)
Q Consensus 514 ~~~~~~~p~~i~~l~-~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~~L~~L~l 592 (796)
|.....+|..++.++ +|++|++ ..+...+..+..+.. ..+..|+.+.+.+. .+.......+..+++|+.|++
T Consensus 353 n~l~~~~p~~l~~l~~~L~~L~L--s~N~l~~~~~~~~~~-~~~~~L~~L~L~~n----~l~~~~p~~l~~l~~L~~L~L 425 (768)
T 3rgz_A 353 NEFSGELPESLTNLSASLLTLDL--SSNNFSGPILPNLCQ-NPKNTLQELYLQNN----GFTGKIPPTLSNCSELVSLHL 425 (768)
T ss_dssp SEEEECCCTTHHHHTTTCSEEEC--CSSEEEEECCTTTTC-STTCCCCEEECCSS----EEEEECCGGGGGCTTCCEEEC
T ss_pred CccCccccHHHHhhhcCCcEEEc--cCCCcCCCcChhhhh-cccCCccEEECCCC----ccccccCHHHhcCCCCCEEEC
Confidence 543335555544444 4554442 111111000111100 00122222222221 111112223444555555555
Q ss_pred EeccccCCCCCcCcc----------CchhHHHHHhhCCCCCCCcEEEEeecCCC-CCCchhhhccCCcEEEEcCCCCCCC
Q 003773 593 EFGRVVDGEGEEGRR----------KNEKDKQLLEALQPPLNVEELWILFYGGN-IFPKWLTLLTNLRELKLFSCVNCEH 661 (796)
Q Consensus 593 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~L~~~~~~~~ 661 (796)
+.|.+.+........ .......++..+..+++|+.|++++|... .+|.++..+++|++|+|++|...+.
T Consensus 426 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 505 (768)
T 3rgz_A 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505 (768)
T ss_dssp CSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred cCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCc
Confidence 555433211110000 00000112334455667777777777765 4677777777777777777766666
Q ss_pred CCc-cccc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCC-------ccceee-----------------
Q 003773 662 LPP-LGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFP-------KLKSLK----------------- 715 (796)
Q Consensus 662 lp~-l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~L~~L~----------------- 715 (796)
+|. ++.+ +|+.|++++|.....++..+..+..+...+.+.+...+.+| .+..+.
T Consensus 506 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (768)
T 3rgz_A 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 585 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCT
T ss_pred CChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccc
Confidence 666 6667 77777777776655665554433333222222111111110 000000
Q ss_pred ------------------------------------------ccccc-----cccccccccccccccCCCCccceeeccC
Q 003773 716 ------------------------------------------IEDLD-----ELEEWNYRVTRKENISIMPRLSSLEIDC 748 (796)
Q Consensus 716 ------------------------------------------l~~~~-----~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 748 (796)
+.++. +|..+.+++..|..++.+++|+.|+|++
T Consensus 586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~ 665 (768)
T 3rgz_A 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665 (768)
T ss_dssp TCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCS
T ss_pred cccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcC
Confidence 00011 2334445566677788888888888888
Q ss_pred CCCCCCCCcCCCCCCCccEEEEcCCCchhhcc
Q 003773 749 CSKLNVLPDHLLQTTTLQELSIRGCPILEERY 780 (796)
Q Consensus 749 c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~ 780 (796)
|.....+|..+..+++|+.|++++|..-..++
T Consensus 666 N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip 697 (768)
T 3rgz_A 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCEECCC
T ss_pred CccCCCCChHHhCCCCCCEEECCCCcccCcCC
Confidence 87667888888888888888888887655544
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=9.2e-25 Score=252.88 Aligned_cols=349 Identities=13% Similarity=0.111 Sum_probs=235.4
Q ss_pred CCceEEEEEeecCCCC------------------CCCCCC--CCCCccEEEEecCCCCCCCCchhhHHHhhhcCccccee
Q 003773 372 GEKVRHLGLNFEGGAS------------------FPMSTP--EFNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRAL 431 (796)
Q Consensus 372 ~~~~~~l~l~~~~~~~------------------~~~~~~--~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L 431 (796)
...++.+.+..+.... .+.... .+++|+.|.+.+. .+.+.++ ..+.++++|+.|
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N-----~l~~~iP-~~l~~L~~L~~L 520 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC-----PNMTQLP-DFLYDLPELQSL 520 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC-----TTCCSCC-GGGGGCSSCCEE
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC-----CCCccCh-HHHhCCCCCCEE
Confidence 4578889998887765 344333 4445554444332 2334444 457888888888
Q ss_pred eecccccCCCcccccc--cccccccCcc-------ccceEecCCCCccccch--hhhccCCccEeeccccccccccchhh
Q 003773 432 VIRQWFVPLDDQNFIR--EIPENIGKLI-------HLKYLNLSELCIERLPE--TLCELYNLQKLAVRWCTNLRELPAGI 500 (796)
Q Consensus 432 ~l~~~~~~~~~~~~~~--~lp~~~~~l~-------~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~~ 500 (796)
+|++ +..+. .+|..++.++ +|++|++++|.++.+|. .++++++|++|+|++|. +..+| .+
T Consensus 521 ~Ls~-------N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~ 591 (876)
T 4ecn_A 521 NIAC-------NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AF 591 (876)
T ss_dssp ECTT-------CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CC
T ss_pred ECcC-------CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-hh
Confidence 8884 22143 4677666665 88888888888888888 88888888888888877 44788 78
Q ss_pred ccccCCCeeecCCccccccCcccCCCCCC-cccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhh-h
Q 003773 501 GKLMNMRSLMNGQTEKLKYLPIGISRLTS-LRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAE-R 578 (796)
Q Consensus 501 ~~l~~L~~L~l~~~~~~~~~p~~i~~l~~-L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~-~ 578 (796)
+.+++|++|++++|. +..+|..++.+++ |+.|++ ..+... ..+..+..+ ...+|+.+.+.+..-....+... .
T Consensus 592 ~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~L--s~N~L~-~lp~~~~~~-~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGF--SHNKLK-YIPNIFNAK-SVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp CTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEEC--CSSCCC-SCCSCCCTT-CSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred cCCCcceEEECcCCc-cccchHHHhhccccCCEEEC--cCCCCC-cCchhhhcc-ccCCCCEEECcCCcCCCccccchhh
Confidence 888888888888884 4588888888888 888863 333332 233222221 11224444444322111111110 0
Q ss_pred ccccccccccceEEEeccccCCCCCcCccCchhHHHHHhh-CCCCCCCcEEEEeecCCCCCCchhhh--------ccCCc
Q 003773 579 LQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEA-LQPPLNVEELWILFYGGNIFPKWLTL--------LTNLR 649 (796)
Q Consensus 579 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~p~~~~~--------l~~L~ 649 (796)
.....+++|+.|+++.|.+.. ++.. +..+++|+.|++++|.+..+|.++.. +++|+
T Consensus 667 l~~~~~~~L~~L~Ls~N~L~~---------------lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~ 731 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNEIQK---------------FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731 (876)
T ss_dssp TTTCCCCCEEEEECCSSCCCS---------------CCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCC
T ss_pred hccccCCCcCEEEccCCcCCc---------------cCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCcc
Confidence 111134578888888877532 1111 22567888888888888887776553 33888
Q ss_pred EEEEcCCCCCCCCCc-cc--cc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeecccccccccc
Q 003773 650 ELKLFSCVNCEHLPP-LG--KL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEW 725 (796)
Q Consensus 650 ~L~L~~~~~~~~lp~-l~--~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~ 725 (796)
.|+|++|. +..+|. +. .+ +|+.|+|++|.... ++.. +..+++|+.|+++++..+..+
T Consensus 732 ~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~-----------------l~~L~~L~~L~Ls~N~~ls~N 792 (876)
T 4ecn_A 732 TIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQ-----------------PLNSSQLKAFGIRHQRDAEGN 792 (876)
T ss_dssp EEECCSSC-CCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCG-----------------GGGCTTCCEEECCCCBCTTCC
T ss_pred EEECCCCC-CccchHHhhhccCCCcCEEEeCCCCCCc-cchh-----------------hhcCCCCCEEECCCCCCcccc
Confidence 88888884 446776 54 66 88888888875332 3222 347899999999998888888
Q ss_pred ccccccccccCCCCccceeeccCCCCCCCCCcCCCCCCCccEEEEcCCCchh
Q 003773 726 NYRVTRKENISIMPRLSSLEIDCCSKLNVLPDHLLQTTTLQELSIRGCPILE 777 (796)
Q Consensus 726 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~ 777 (796)
.+.+..|..+..+++|++|+|++|+. +.+|..+. ++|+.|+|++|+...
T Consensus 793 ~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 793 RILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred cccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence 88888899999999999999999955 99998765 799999999998643
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=8.8e-25 Score=249.41 Aligned_cols=347 Identities=12% Similarity=0.131 Sum_probs=247.5
Q ss_pred CCceEEEEEeecCCCC------------------CCCCCC--CCCCccEEEEecCCCCCCCCchhhHHHhhhcCccccee
Q 003773 372 GEKVRHLGLNFEGGAS------------------FPMSTP--EFNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRAL 431 (796)
Q Consensus 372 ~~~~~~l~l~~~~~~~------------------~~~~~~--~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L 431 (796)
...++.+.+..+.... .+.... .+.+|+.|.+.+. .+.+.++ ..+.++++|++|
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n-----~l~~~~p-~~l~~l~~L~~L 278 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC-----PNLTKLP-TFLKALPEMQLI 278 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC-----TTCSSCC-TTTTTCSSCCEE
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC-----cCCccCh-HHHhcCCCCCEE
Confidence 4578888888887765 455444 5556655555443 2334433 457889999999
Q ss_pred eecccccCCCcccccc--cccccccCc------cccceEecCCCCccccch--hhhccCCccEeeccccccccccchhhc
Q 003773 432 VIRQWFVPLDDQNFIR--EIPENIGKL------IHLKYLNLSELCIERLPE--TLCELYNLQKLAVRWCTNLRELPAGIG 501 (796)
Q Consensus 432 ~l~~~~~~~~~~~~~~--~lp~~~~~l------~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~~~ 501 (796)
++++ +..+. .+|..++.+ ++|++|++++|.++.+|. .++++++|++|++++|.....+| .++
T Consensus 279 ~Ls~-------n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~ 350 (636)
T 4eco_A 279 NVAC-------NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG 350 (636)
T ss_dssp ECTT-------CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE
T ss_pred ECcC-------CCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhC
Confidence 9994 32144 578888776 899999999999999998 89999999999999887555888 889
Q ss_pred cccCCCeeecCCccccccCcccCCCCCC-cccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhcc
Q 003773 502 KLMNMRSLMNGQTEKLKYLPIGISRLTS-LRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQ 580 (796)
Q Consensus 502 ~l~~L~~L~l~~~~~~~~~p~~i~~l~~-L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~ 580 (796)
.+++|++|++++| .+..+|..++.+++ |++|++ ..+... ..+..+..+ .+.+|+.+.+.+. .+.......
T Consensus 351 ~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~L--s~N~l~-~lp~~~~~~-~l~~L~~L~Ls~N----~l~~~~p~~ 421 (636)
T 4eco_A 351 SEIKLASLNLAYN-QITEIPANFCGFTEQVENLSF--AHNKLK-YIPNIFDAK-SVSVMSAIDFSYN----EIGSVDGKN 421 (636)
T ss_dssp EEEEESEEECCSS-EEEECCTTSEEECTTCCEEEC--CSSCCS-SCCSCCCTT-CSSCEEEEECCSS----CTTTTTTCS
T ss_pred CCCCCCEEECCCC-ccccccHhhhhhcccCcEEEc--cCCcCc-ccchhhhhc-ccCccCEEECcCC----cCCCcchhh
Confidence 9999999999998 55688888888888 998873 333332 233322221 1224444554442 222211222
Q ss_pred cc-------ccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCchhhh--------c
Q 003773 581 LY-------NKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPKWLTL--------L 645 (796)
Q Consensus 581 l~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~--------l 645 (796)
+. .+++|+.|+++.|.+..... ..+..+++|+.|++++|.+..+|..+.. +
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~--------------~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l 487 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQISKFPK--------------ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCCSCCT--------------HHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTG
T ss_pred hcccccccccCCCCCEEECcCCccCcCCH--------------HHHccCCCCCEEECCCCCCCCcCHHHhcccccccccc
Confidence 33 56688889988887542110 1123467899999999988888776543 2
Q ss_pred cCCcEEEEcCCCCCCCCCc-cc--cc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeecccccc
Q 003773 646 TNLRELKLFSCVNCEHLPP-LG--KL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDE 721 (796)
Q Consensus 646 ~~L~~L~L~~~~~~~~lp~-l~--~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 721 (796)
++|++|+|++|... .+|. +. .+ +|+.|++++|.... ++.. +..+++|+.|+++++..
T Consensus 488 ~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~-----------------~~~l~~L~~L~Ls~N~~ 548 (636)
T 4eco_A 488 YLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ-----------------PLNSSTLKGFGIRNQRD 548 (636)
T ss_dssp GGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCG-----------------GGGCSSCCEEECCSCBC
T ss_pred CCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChh-----------------hhcCCCCCEEECCCCcc
Confidence 38999999998544 6776 54 67 89999998876433 3332 34789999999998877
Q ss_pred ccccccccccccccCCCCccceeeccCCCCCCCCCcCCCCCCCccEEEEcCCCchh
Q 003773 722 LEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLPDHLLQTTTLQELSIRGCPILE 777 (796)
Q Consensus 722 L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~ 777 (796)
+..+.+.+..|..+..+++|++|+|++|. ++.+|..+. ++|+.|++++|+...
T Consensus 549 ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 549 AQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp TTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC--TTCCEEECCSCTTCE
T ss_pred cccCcccccChHHHhcCCCCCEEECCCCc-CCccCHhHh--CcCCEEECcCCCCcc
Confidence 77788888889999999999999999995 489998765 899999999998543
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=3.6e-25 Score=253.10 Aligned_cols=147 Identities=20% Similarity=0.173 Sum_probs=108.2
Q ss_pred CCCceEEEEEeecCCCCCCCCCCCCCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCcccccccc-
Q 003773 371 FGEKVRHLGLNFEGGASFPMSTPEFNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREI- 449 (796)
Q Consensus 371 ~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l- 449 (796)
.+..++.+.+..+.....+. ..|.+++.|+.++++ .+....+++..|.++++|++|+++ ++.+..+
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls---~n~l~~i~~~~~~~l~~L~~L~Ls--------~n~l~~~~ 96 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKS--YSFSNFSELQWLDLS---RCEIETIEDKAWHGLHHLSNLILT--------GNPIQSFS 96 (606)
T ss_dssp SCTTCCEEECTTSCCCEECT--TTTTTCTTCCEEECT---TCCCCEECTTTTTTCTTCCEEECT--------TCCCCCCC
T ss_pred CCCCcCEEECCCCCcCEeCh--hhccCCccCcEEeCC---CCcccccCHHHhhchhhcCEeECC--------CCcccccC
Confidence 45788999988887764322 345666666666666 233445556678899999999999 5556665
Q ss_pred cccccCccccceEecCCCCccccc-hhhhccCCccEeecccccccc-ccchhhccccCCCeeecCCccccccCcccCCCC
Q 003773 450 PENIGKLIHLKYLNLSELCIERLP-ETLCELYNLQKLAVRWCTNLR-ELPAGIGKLMNMRSLMNGQTEKLKYLPIGISRL 527 (796)
Q Consensus 450 p~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l 527 (796)
|..++++++|++|++++|.+..+| ..++++++|++|++++|.... .+|..++++++|++|++++|......|..++.+
T Consensus 97 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 176 (606)
T 3vq2_A 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176 (606)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHH
T ss_pred hhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhh
Confidence 788999999999999999988776 578999999999999887443 578889999999999999885444334444444
Q ss_pred CCc
Q 003773 528 TSL 530 (796)
Q Consensus 528 ~~L 530 (796)
++|
T Consensus 177 ~~L 179 (606)
T 3vq2_A 177 REN 179 (606)
T ss_dssp HHC
T ss_pred hcc
Confidence 433
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=1.5e-24 Score=244.83 Aligned_cols=371 Identities=18% Similarity=0.147 Sum_probs=235.4
Q ss_pred CCceEEEEEeecCCCCCCCCCCCCCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCcccccccccc
Q 003773 372 GEKVRHLGLNFEGGASFPMSTPEFNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREIPE 451 (796)
Q Consensus 372 ~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~ 451 (796)
+..++.+.+..+...... ...+.+++.|+.++++ .+.....++..|.++++|++|+++ ++.+..+|.
T Consensus 25 ~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls---~n~i~~~~~~~~~~l~~L~~L~Ls--------~n~l~~~~~ 91 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIG--HGDLRACANLQVLILK---SSRINTIEGDAFYSLGSLEHLDLS--------DNHLSSLSS 91 (549)
T ss_dssp CTTCCEEECCSSCCCEEC--SSTTSSCTTCCEEECT---TSCCCEECTTTTTTCTTCCEEECT--------TSCCCSCCH
T ss_pred CCCccEEECcCCccCccC--hhhhhcCCcccEEECC---CCCcCccChhhccccccCCEEECC--------CCccCccCH
Confidence 467889998888766432 2335555666666665 233445556678899999999999 666666654
Q ss_pred -cccCccccceEecCCCCccc--cchhhhccCCccEeeccccccccccc-hhhccccCCCeeecCCccccccCcccCCCC
Q 003773 452 -NIGKLIHLKYLNLSELCIER--LPETLCELYNLQKLAVRWCTNLRELP-AGIGKLMNMRSLMNGQTEKLKYLPIGISRL 527 (796)
Q Consensus 452 -~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l 527 (796)
.++++++|++|++++|.++. .|..++++++|++|++++|..+..+| ..+..+++|++|++++|......|..++.+
T Consensus 92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 171 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171 (549)
T ss_dssp HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence 48999999999999999884 46778999999999999988677776 478899999999999886666677777776
Q ss_pred CCcccCCCe----------------------eeCCccCCCC--ccc-cccc-------------------------ccCC
Q 003773 528 TSLRTLEKF----------------------VVGGGVDGGS--TCR-LESL-------------------------KNLQ 557 (796)
Q Consensus 528 ~~L~~L~~~----------------------~~~~~~~~~~--~~~-l~~l-------------------------~~L~ 557 (796)
++|++|++. ...+...+.. +.. ...+ ..+.
T Consensus 172 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~ 251 (549)
T 2z81_A 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251 (549)
T ss_dssp SEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCT
T ss_pred ccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhc
Confidence 666665421 1111111100 000 0000 0111
Q ss_pred CCCcceecCCC-----CC--------CChhh------------------------------------------hhhcccc
Q 003773 558 LLRECRVEGLS-----NV--------SHVDE------------------------------------------AERLQLY 582 (796)
Q Consensus 558 ~L~~l~l~~l~-----~~--------~~~~~------------------------------------------~~~~~l~ 582 (796)
.|+.+.+.++. .. ..... +....+.
T Consensus 252 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~ 331 (549)
T 2z81_A 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQ 331 (549)
T ss_dssp TCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHH
T ss_pred cccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHh
Confidence 11111111110 00 00000 0000012
Q ss_pred ccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCC---chhhhccCCcEEEEcCCCCC
Q 003773 583 NKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFP---KWLTLLTNLRELKLFSCVNC 659 (796)
Q Consensus 583 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p---~~~~~l~~L~~L~L~~~~~~ 659 (796)
.+++|+.|+++.|.+.+ ........+..+++|+.|++++|....+| ..+..+++|++|++++|. +
T Consensus 332 ~l~~L~~L~Ls~N~l~~-----------~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l 399 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVE-----------EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-F 399 (549)
T ss_dssp HCTTCCEEECCSSCCCH-----------HHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-C
T ss_pred cCccccEEEccCCcccc-----------ccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-C
Confidence 34555555555554311 00111234667789999999999887765 346789999999999994 5
Q ss_pred CCCCc-cccc-cccceeccccccceEeCcc-ccCCCCCCccCCCCCCcccCCCccceeeccccccccccccccccccccC
Q 003773 660 EHLPP-LGKL-LLEKLTLYNLISVKRVGDE-FLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENIS 736 (796)
Q Consensus 660 ~~lp~-l~~l-~L~~L~l~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~ 736 (796)
..+|. +..+ +|+.|++++|.. ..++.. ...+..+++.++........+++|++|+++++ .++.+ |. ..
T Consensus 400 ~~lp~~~~~~~~L~~L~Ls~N~l-~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~i------p~-~~ 470 (549)
T 2z81_A 400 HPMPDSCQWPEKMRFLNLSSTGI-RVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTL------PD-AS 470 (549)
T ss_dssp CCCCSCCCCCTTCCEEECTTSCC-SCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSC------CC-GG
T ss_pred ccCChhhcccccccEEECCCCCc-ccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcC------CC-cc
Confidence 56776 6677 899999998763 333322 22344444444444444568899999988887 55533 43 35
Q ss_pred CCCccceeeccCCCCCCCCCcCCCCCCCccEEEEcCCCch
Q 003773 737 IMPRLSSLEIDCCSKLNVLPDHLLQTTTLQELSIRGCPIL 776 (796)
Q Consensus 737 ~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l 776 (796)
.+++|++|+|++|+.....|..+..+++|+.|++++|+..
T Consensus 471 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 471 LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred cCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCcc
Confidence 7899999999999554444555788999999999999954
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=3.6e-24 Score=244.78 Aligned_cols=368 Identities=15% Similarity=0.064 Sum_probs=201.9
Q ss_pred CCCceEEEEEeecCCCCCCCCCCCCCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCcccccccc-
Q 003773 371 FGEKVRHLGLNFEGGASFPMSTPEFNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREI- 449 (796)
Q Consensus 371 ~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l- 449 (796)
.+..++.+.+..+.+.... ...|.+++.|+.++++ .+....+.+..|.++++|++|+++ ++.+..+
T Consensus 31 l~~~l~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls---~n~i~~~~~~~~~~l~~L~~L~Ls--------~n~l~~~~ 97 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQ--NTTFSRLINLTFLDLT---RCQIYWIHEDTFQSQHRLDTLVLT--------ANPLIFMA 97 (606)
T ss_dssp SCTTCCEEECTTCCCSEEC--TTTSTTCTTCSEEECT---TCCCCEECTTTTTTCTTCCEEECT--------TCCCSEEC
T ss_pred CCCcCcEEEccCCccCcCC--hhHhccCccceEEECC---CCccceeChhhccCccccCeeeCC--------CCcccccC
Confidence 4667899999988876432 2345566666666665 233445556678999999999999 5555444
Q ss_pred cccccCccccceEecCCCCcccc-chhhhccCCccEeeccccccccccchhhccccCCCeeecCCccccccCcccCCCCC
Q 003773 450 PENIGKLIHLKYLNLSELCIERL-PETLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTEKLKYLPIGISRLT 528 (796)
Q Consensus 450 p~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~ 528 (796)
|..++++++|++|++++|.++.+ |..++++++|++|++++|.....-++.+..+++|++|++++|......|..++.++
T Consensus 98 ~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 177 (606)
T 3t6q_A 98 ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177 (606)
T ss_dssp TTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTT
T ss_pred hhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhc
Confidence 77899999999999999999887 56789999999999999874332223345599999999999855444466678888
Q ss_pred CcccCCCeeeCCccCCCCcccccc--c---------------ccCC-------------------------------CCC
Q 003773 529 SLRTLEKFVVGGGVDGGSTCRLES--L---------------KNLQ-------------------------------LLR 560 (796)
Q Consensus 529 ~L~~L~~~~~~~~~~~~~~~~l~~--l---------------~~L~-------------------------------~L~ 560 (796)
+|+.+.+...++......+..+.. + ..+. .|+
T Consensus 178 ~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~ 257 (606)
T 3t6q_A 178 QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE 257 (606)
T ss_dssp TCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEE
T ss_pred ccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCcee
Confidence 888433223333322111111110 0 0000 011
Q ss_pred cceecCCCCCCChhhhhhccccccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCC-C
Q 003773 561 ECRVEGLSNVSHVDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIF-P 639 (796)
Q Consensus 561 ~l~l~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p 639 (796)
.+.+.+ +.+.......+..+++|+.|+++.|.+.. ++..+..+++|++|+++++....+ |
T Consensus 258 ~L~l~~----n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------lp~~l~~l~~L~~L~l~~n~l~~~~~ 318 (606)
T 3t6q_A 258 SINLQK----HYFFNISSNTFHCFSGLQELDLTATHLSE---------------LPSGLVGLSTLKKLVLSANKFENLCQ 318 (606)
T ss_dssp EEECTT----CCCSSCCTTTTTTCTTCSEEECTTSCCSC---------------CCSSCCSCTTCCEEECTTCCCSBGGG
T ss_pred EEEeec----CccCccCHHHhccccCCCEEeccCCccCC---------------CChhhcccccCCEEECccCCcCcCch
Confidence 111111 11112222234556666666666665432 223344555666666666655544 3
Q ss_pred chhhhccCCcEEEEcCCCCCCCCCc--cccc-cccceeccccccceEe--CccccCCCCCCccCCCC-------CCcccC
Q 003773 640 KWLTLLTNLRELKLFSCVNCEHLPP--LGKL-LLEKLTLYNLISVKRV--GDEFLGIEESSVDDTSS-------SSSVIA 707 (796)
Q Consensus 640 ~~~~~l~~L~~L~L~~~~~~~~lp~--l~~l-~L~~L~l~~~~~l~~~--~~~~~~~~~~~~~~~~~-------~~~~~~ 707 (796)
..+..+++|++|++++|.....+|. ++.+ +|++|+++++...... +..+..+..+...+... ...+..
T Consensus 319 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 398 (606)
T 3t6q_A 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398 (606)
T ss_dssp GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT
T ss_pred hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC
Confidence 4555666666666666654434433 4455 5666666655433222 22222222111111111 112334
Q ss_pred CCccceeeccccccccccccccccccccCCCCccceeeccCCCCCCCCCcCCCCCCCccEEEEcCCCc
Q 003773 708 FPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLPDHLLQTTTLQELSIRGCPI 775 (796)
Q Consensus 708 ~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~ 775 (796)
+++|+.|+++++ .+.... .+..+..+++|++|++++|......|..+..+++|++|++++|+.
T Consensus 399 l~~L~~L~l~~n-~l~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 461 (606)
T 3t6q_A 399 CPQLELLDLAFT-RLKVKD----AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461 (606)
T ss_dssp CTTCSEEECTTC-CEECCT----TCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBC
T ss_pred CccCCeEECCCC-cCCCcc----cchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCC
Confidence 555556555444 121111 022245556666666666644444444555556666666666653
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=7.1e-25 Score=250.16 Aligned_cols=316 Identities=13% Similarity=0.114 Sum_probs=208.3
Q ss_pred HhhhcCcccceeeecccccCCCccccccc------------------cccccc--CccccceEecCCCCcc-ccchhhhc
Q 003773 420 ELFSKVACLRALVIRQWFVPLDDQNFIRE------------------IPENIG--KLIHLKYLNLSELCIE-RLPETLCE 478 (796)
Q Consensus 420 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------------------lp~~~~--~l~~L~~L~l~~~~i~-~lp~~i~~ 478 (796)
..+.++++|++|+|+ ++.+.. +|..++ ++++|++|++++|.+. .+|..+++
T Consensus 200 ~~l~~l~~L~~L~Ls--------~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 200 KAVMRLTKLRQFYMG--------NSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp GGGGGCTTCCEEEEE--------SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred HHHhcccCCCEEECc--------CCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 347778888888888 444444 888888 8888888888888744 77888888
Q ss_pred cCCccEeeccccc-ccc-ccchhhccc------cCCCeeecCCccccccCcc--cCCCCCCcccCCCeeeCCccCCCCcc
Q 003773 479 LYNLQKLAVRWCT-NLR-ELPAGIGKL------MNMRSLMNGQTEKLKYLPI--GISRLTSLRTLEKFVVGGGVDGGSTC 548 (796)
Q Consensus 479 l~~L~~L~l~~~~-~~~-~lp~~~~~l------~~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~~~~~~~~~~~~~~~ 548 (796)
+++|++|++++|. ... .+|..++.+ ++|++|++++| .+..+|. .++++++|++|++ ..+...+..+
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L--~~N~l~g~ip- 347 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLEC--LYNQLEGKLP- 347 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEEC--CSCCCEEECC-
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeC--cCCcCccchh-
Confidence 8888888888887 334 588877776 88888888888 4458887 7888888888863 3333322233
Q ss_pred cccccccCCCCCcceecCCCCCCChhhhhhcccccccc-ccceEEEeccccCCCCCcCccCchhHHHHHhhCCC--CCCC
Q 003773 549 RLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKN-LLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQP--PLNV 625 (796)
Q Consensus 549 ~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~L 625 (796)
.+..+ ++|+.+.+.+. .+. .....+..+++ |+.|+++.|.+.. ++..+.. +++|
T Consensus 348 ~~~~l---~~L~~L~L~~N----~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~---------------lp~~~~~~~l~~L 404 (636)
T 4eco_A 348 AFGSE---IKLASLNLAYN----QIT-EIPANFCGFTEQVENLSFAHNKLKY---------------IPNIFDAKSVSVM 404 (636)
T ss_dssp CCEEE---EEESEEECCSS----EEE-ECCTTSEEECTTCCEEECCSSCCSS---------------CCSCCCTTCSSCE
T ss_pred hhCCC---CCCCEEECCCC----ccc-cccHhhhhhcccCcEEEccCCcCcc---------------cchhhhhcccCcc
Confidence 33333 34444444331 111 11223667777 8888888887542 1222333 3478
Q ss_pred cEEEEeecCCCC-CCchhh-------hccCCcEEEEcCCCCCCCCCc--cccc-cccceeccccccceEeCcccc-----
Q 003773 626 EELWILFYGGNI-FPKWLT-------LLTNLRELKLFSCVNCEHLPP--LGKL-LLEKLTLYNLISVKRVGDEFL----- 689 (796)
Q Consensus 626 ~~L~l~~~~~~~-~p~~~~-------~l~~L~~L~L~~~~~~~~lp~--l~~l-~L~~L~l~~~~~l~~~~~~~~----- 689 (796)
+.|++++|.+.. .|.++. .+++|++|+|++|.. ..+|. +..+ +|+.|++++|... .++....
T Consensus 405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l-~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~ 482 (636)
T 4eco_A 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI-SKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENE 482 (636)
T ss_dssp EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC-CSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTE
T ss_pred CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc-CcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccc
Confidence 999998888754 466665 677899999999854 46666 4446 8999999887644 4444322
Q ss_pred ------CCCCCCccCCCCC---Cccc--CCCccceeeccccccccccccccccccccCCCCccceeecc------CCCCC
Q 003773 690 ------GIEESSVDDTSSS---SSVI--AFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEID------CCSKL 752 (796)
Q Consensus 690 ------~~~~~~~~~~~~~---~~~~--~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~------~c~~l 752 (796)
.+..+.+.++... .... .+++|+.|+++++ .++ + .|..+..+++|++|+|+ +|...
T Consensus 483 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~-----~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~ 555 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFS-----K-FPTQPLNSSTLKGFGIRNQRDAQGNRTL 555 (636)
T ss_dssp ECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSS-CCS-----S-CCCGGGGCSSCCEEECCSCBCTTCCBCC
T ss_pred cccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCC-CCC-----C-cChhhhcCCCCCEEECCCCcccccCccc
Confidence 2222333322221 1222 6778888866665 333 2 36677788888888884 45456
Q ss_pred CCCCcCCCCCCCccEEEEcCCCchhhcc
Q 003773 753 NVLPDHLLQTTTLQELSIRGCPILEERY 780 (796)
Q Consensus 753 ~~lp~~~~~l~~L~~L~l~~~~~l~~~~ 780 (796)
+.+|..+..+++|++|++++|.. +..+
T Consensus 556 ~~~p~~l~~l~~L~~L~Ls~N~l-~~ip 582 (636)
T 4eco_A 556 REWPEGITLCPSLTQLQIGSNDI-RKVN 582 (636)
T ss_dssp CCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred ccChHHHhcCCCCCEEECCCCcC-CccC
Confidence 77888888888888888888876 4443
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=1.6e-23 Score=239.37 Aligned_cols=163 Identities=20% Similarity=0.145 Sum_probs=117.7
Q ss_pred EEEEeecCCCCCCCCCCCCCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCcccccccc-cccccC
Q 003773 377 HLGLNFEGGASFPMSTPEFNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREI-PENIGK 455 (796)
Q Consensus 377 ~l~l~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-p~~~~~ 455 (796)
.+.....+....+...+ .+++.| +++ .+....+++..|.++++|++|+++ ++.+..+ |..+++
T Consensus 15 ~~~c~~~~l~~ip~~~~--~~l~~L---~Ls---~n~l~~~~~~~~~~l~~L~~L~Ls--------~n~l~~i~~~~~~~ 78 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDDIP--SSTKNI---DLS---FNPLKILKSYSFSNFSELQWLDLS--------RCEIETIEDKAWHG 78 (606)
T ss_dssp EEECTTSCCSSCCTTSC--TTCCEE---ECT---TSCCCEECTTTTTTCTTCCEEECT--------TCCCCEECTTTTTT
T ss_pred ceEccCCCcccCCCCCC--CCcCEE---ECC---CCCcCEeChhhccCCccCcEEeCC--------CCcccccCHHHhhc
Confidence 34444444554444332 455555 554 233455566678999999999999 5666666 678999
Q ss_pred ccccceEecCCCCcccc-chhhhccCCccEeeccccccccccchhhccccCCCeeecCCccccc-cCcccCCCCCCcccC
Q 003773 456 LIHLKYLNLSELCIERL-PETLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTEKLK-YLPIGISRLTSLRTL 533 (796)
Q Consensus 456 l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L 533 (796)
+++|++|++++|.++.+ |..++++++|++|++++|......|..++.+++|++|++++|.... .+|..++++++|++|
T Consensus 79 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L 158 (606)
T 3vq2_A 79 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 158 (606)
T ss_dssp CTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEE
T ss_pred hhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEE
Confidence 99999999999999987 7789999999999999988444444679999999999999995443 579999999999999
Q ss_pred CCeeeCCccCCCCcccccccccCC
Q 003773 534 EKFVVGGGVDGGSTCRLESLKNLQ 557 (796)
Q Consensus 534 ~~~~~~~~~~~~~~~~l~~l~~L~ 557 (796)
++ ..+......+..+..+.+|+
T Consensus 159 ~L--s~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 159 DL--SYNYIQTITVNDLQFLRENP 180 (606)
T ss_dssp EC--CSSCCCEECTTTTHHHHHCT
T ss_pred Ec--cCCcceecChhhhhhhhccc
Confidence 73 34443333333444444443
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=3.3e-24 Score=243.45 Aligned_cols=147 Identities=19% Similarity=0.202 Sum_probs=105.9
Q ss_pred CCCceEEEEEeecCCCCCCCCCCCCCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCcccccccc-
Q 003773 371 FGEKVRHLGLNFEGGASFPMSTPEFNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREI- 449 (796)
Q Consensus 371 ~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l- 449 (796)
.+..++.+.+..+...... ...|.+++.|+.++++ .+....+++..|.++++|++|+++ ++.+..+
T Consensus 26 l~~~l~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls---~n~i~~i~~~~~~~l~~L~~L~L~--------~n~l~~~~ 92 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLG--SYSFFSFPELQVLDLS---RCEIQTIEDGAYQSLSHLSTLILT--------GNPIQSLA 92 (570)
T ss_dssp SCSSCCEEECCSCCCCEEC--TTTTTTCSSCCEEECT---TCCCCEECTTTTTTCTTCCEEECT--------TCCCCEEC
T ss_pred ccccccEEEccCCccCccC--hhHhhCCCCceEEECC---CCcCCccCcccccCchhCCEEeCc--------CCcCCccC
Confidence 4567888988888766432 2345666666666766 233445566678889999999999 5556655
Q ss_pred cccccCccccceEecCCCCccccch-hhhccCCccEeecccccccc-ccchhhccccCCCeeecCCccccccCcccCCCC
Q 003773 450 PENIGKLIHLKYLNLSELCIERLPE-TLCELYNLQKLAVRWCTNLR-ELPAGIGKLMNMRSLMNGQTEKLKYLPIGISRL 527 (796)
Q Consensus 450 p~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l 527 (796)
|..++++++|++|++++|.++.+|. .++++++|++|++++|.... .+|..++++++|++|++++|......|..++.+
T Consensus 93 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 172 (570)
T 2z63_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172 (570)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHH
T ss_pred HhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccch
Confidence 4678889999999999998888776 58888999999998877443 468888889999999998885433344455555
Q ss_pred CCc
Q 003773 528 TSL 530 (796)
Q Consensus 528 ~~L 530 (796)
++|
T Consensus 173 ~~L 175 (570)
T 2z63_A 173 HQM 175 (570)
T ss_dssp HTC
T ss_pred hcc
Confidence 555
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=1.9e-24 Score=250.27 Aligned_cols=315 Identities=13% Similarity=0.118 Sum_probs=193.3
Q ss_pred HhhhcCcccceeeecccccCCCccccccc------------------cccccc--CccccceEecCCCCc-cccchhhhc
Q 003773 420 ELFSKVACLRALVIRQWFVPLDDQNFIRE------------------IPENIG--KLIHLKYLNLSELCI-ERLPETLCE 478 (796)
Q Consensus 420 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------------------lp~~~~--~l~~L~~L~l~~~~i-~~lp~~i~~ 478 (796)
..+.++++|++|+|+ ++.+.. +|+.++ ++++|++|+|++|.+ ..+|..+++
T Consensus 442 ~~l~~L~~L~~L~Ls--------~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFA--------NSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp GGGGGCTTCCEEEEE--------SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred HHHhcCCCCCEEECc--------CCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 346777788888888 333443 777777 788888888888773 477777888
Q ss_pred cCCccEeeccccc-ccc-ccchhhcccc-------CCCeeecCCccccccCcc--cCCCCCCcccCCCeeeCCccCCCCc
Q 003773 479 LYNLQKLAVRWCT-NLR-ELPAGIGKLM-------NMRSLMNGQTEKLKYLPI--GISRLTSLRTLEKFVVGGGVDGGST 547 (796)
Q Consensus 479 l~~L~~L~l~~~~-~~~-~lp~~~~~l~-------~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~~~~~~~~~~~~~~ 547 (796)
+++|++|+|++|. ... .+|..++.++ +|++|++++|. +..+|. .++++++|+.|++ ..+... ..+
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~L--s~N~l~-~lp 589 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDC--VHNKVR-HLE 589 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEEC--TTSCCC-BCC
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEEC--CCCCcc-cch
Confidence 8888888888776 333 5777676665 78888888874 447777 7778888887763 333322 222
Q ss_pred ccccccccCCCCCcceecCCCCCCChhhhhhcccccccc-ccceEEEeccccCCCCCcCccCchhHHHHHhhCCCC--CC
Q 003773 548 CRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKN-LLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPP--LN 624 (796)
Q Consensus 548 ~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 624 (796)
.+..+++|+.+.+.+..- . .....+..+++ |+.|+++.|.+.. ++..+... ++
T Consensus 590 ----~~~~L~~L~~L~Ls~N~l----~-~lp~~l~~l~~~L~~L~Ls~N~L~~---------------lp~~~~~~~~~~ 645 (876)
T 4ecn_A 590 ----AFGTNVKLTDLKLDYNQI----E-EIPEDFCAFTDQVEGLGFSHNKLKY---------------IPNIFNAKSVYV 645 (876)
T ss_dssp ----CCCTTSEESEEECCSSCC----S-CCCTTSCEECTTCCEEECCSSCCCS---------------CCSCCCTTCSSC
T ss_pred ----hhcCCCcceEEECcCCcc----c-cchHHHhhccccCCEEECcCCCCCc---------------CchhhhccccCC
Confidence 444455555555544221 1 11123666777 8888888776532 11222223 34
Q ss_pred CcEEEEeecCCCCC----Cchhh--hccCCcEEEEcCCCCCCCCCc--cccc-cccceeccccccceEeCccccC-----
Q 003773 625 VEELWILFYGGNIF----PKWLT--LLTNLRELKLFSCVNCEHLPP--LGKL-LLEKLTLYNLISVKRVGDEFLG----- 690 (796)
Q Consensus 625 L~~L~l~~~~~~~~----p~~~~--~l~~L~~L~L~~~~~~~~lp~--l~~l-~L~~L~l~~~~~l~~~~~~~~~----- 690 (796)
|+.|++++|.+... |..+. .+++|+.|+|++|.. ..+|. +..+ +|+.|++++|.. ..++.....
T Consensus 646 L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L-~~lp~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~~~~~~~ 723 (876)
T 4ecn_A 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI-QKFPTELFATGSPISTIILSNNLM-TSIPENSLKPKDGN 723 (876)
T ss_dssp EEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCC-CSCCHHHHHTTCCCSEEECCSCCC-SCCCTTSSSCTTSC
T ss_pred CCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcC-CccCHHHHccCCCCCEEECCCCcC-CccChHHhcccccc
Confidence 88888888876433 22223 345788888888853 46665 3356 788888888753 344443322
Q ss_pred ------CCCCCccCCCCC---Cccc--CCCccceeeccccccccccccccccccccCCCCccceeeccC------CCCCC
Q 003773 691 ------IEESSVDDTSSS---SSVI--AFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDC------CSKLN 753 (796)
Q Consensus 691 ------~~~~~~~~~~~~---~~~~--~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~------c~~l~ 753 (796)
+..+.+.++... ..+. .+++|+.|+++++ .++. .|..+..+++|+.|+|++ |....
T Consensus 724 l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~------lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~ 796 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN-CFSS------FPTQPLNSSQLKAFGIRHQRDAEGNRILR 796 (876)
T ss_dssp CTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSS-CCSS------CCCGGGGCTTCCEEECCCCBCTTCCBCCC
T ss_pred ccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCC-CCCc------cchhhhcCCCCCEEECCCCCCcccccccc
Confidence 222222222211 1222 5677777766665 3332 266677788888888866 44456
Q ss_pred CCCcCCCCCCCccEEEEcCCCchhhcc
Q 003773 754 VLPDHLLQTTTLQELSIRGCPILEERY 780 (796)
Q Consensus 754 ~lp~~~~~l~~L~~L~l~~~~~l~~~~ 780 (796)
.+|..+..+++|+.|+|++|+. ..++
T Consensus 797 ~ip~~l~~L~~L~~L~Ls~N~L-~~Ip 822 (876)
T 4ecn_A 797 QWPTGITTCPSLIQLQIGSNDI-RKVD 822 (876)
T ss_dssp CCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred cChHHHhcCCCCCEEECCCCCC-CccC
Confidence 7777777788888888888775 4443
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=1.3e-23 Score=235.29 Aligned_cols=149 Identities=14% Similarity=0.078 Sum_probs=98.5
Q ss_pred CCCCCCcEEEEeecCCCC-CCchhhhccCCcEEEEcCCCCCC--CCCc-cccc-cccceeccccccceEeCcc-ccCCCC
Q 003773 620 QPPLNVEELWILFYGGNI-FPKWLTLLTNLRELKLFSCVNCE--HLPP-LGKL-LLEKLTLYNLISVKRVGDE-FLGIEE 693 (796)
Q Consensus 620 ~~~~~L~~L~l~~~~~~~-~p~~~~~l~~L~~L~L~~~~~~~--~lp~-l~~l-~L~~L~l~~~~~l~~~~~~-~~~~~~ 693 (796)
..+++|++|++++|.... .|.++..+++|++|++++|...+ .+|. ++.+ +|+.|++++|.....++.. +.....
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 456778888888887665 57777778888888888885433 3333 5666 7888888877644424332 222222
Q ss_pred C---CccCCCCC-CcccCC-CccceeeccccccccccccccccccccCCCCccceeeccCCCCCCCCCcC-CCCCCCccE
Q 003773 694 S---SVDDTSSS-SSVIAF-PKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLPDH-LLQTTTLQE 767 (796)
Q Consensus 694 ~---~~~~~~~~-~~~~~~-~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~ 767 (796)
+ .+.++... .....+ ++|+.|++++| .++. .|..+..+++|++|++++| .++.+|.. +..+++|++
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~------ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~ 472 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKS------IPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQK 472 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCC------CCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCEEECcCCCCCcchhhhhcccCCEEECCCC-cccc------cchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccE
Confidence 2 22222111 111233 68888887776 4442 2666678999999999999 56688876 778999999
Q ss_pred EEEcCCCch
Q 003773 768 LSIRGCPIL 776 (796)
Q Consensus 768 L~l~~~~~l 776 (796)
|++++|+.-
T Consensus 473 L~l~~N~~~ 481 (520)
T 2z7x_B 473 IWLHTNPWD 481 (520)
T ss_dssp EECCSSCBC
T ss_pred EECcCCCCc
Confidence 999999864
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=2.2e-23 Score=229.46 Aligned_cols=367 Identities=15% Similarity=0.095 Sum_probs=220.3
Q ss_pred CCCceEEEEEeecCCCCCCCCCCCCCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCcccccccc-
Q 003773 371 FGEKVRHLGLNFEGGASFPMSTPEFNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREI- 449 (796)
Q Consensus 371 ~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l- 449 (796)
.+..++.+.+..+.+... ....+.+++.|+.++++. +.....+++..|.++++|++|+++ ++.+..+
T Consensus 28 l~~~l~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~L~~--n~~~~~i~~~~~~~l~~L~~L~Ls--------~n~l~~~~ 95 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAEL--NETSFSRLQDLQFLKVEQ--QTPGLVIRNNTFRGLSSLIILKLD--------YNQFLQLE 95 (455)
T ss_dssp CCTTCCEEECCSSCCCEE--CTTTTSSCTTCCEEECCC--CSTTCEECTTTTTTCTTCCEEECT--------TCTTCEEC
T ss_pred CCCccCEEEecCCccCcC--ChhHhccCccccEEECcC--CcccceECcccccccccCCEEeCC--------CCccCccC
Confidence 356778888877766532 122344444455555541 222234445567778888888888 4444444
Q ss_pred cccccCccccceEecCCCCccc-cchh--hhccCCccEeeccccccccccchh-hccccCCCeeecCCccccccCcccCC
Q 003773 450 PENIGKLIHLKYLNLSELCIER-LPET--LCELYNLQKLAVRWCTNLRELPAG-IGKLMNMRSLMNGQTEKLKYLPIGIS 525 (796)
Q Consensus 450 p~~~~~l~~L~~L~l~~~~i~~-lp~~--i~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~i~ 525 (796)
|..++++++|++|++++|.++. .|.. +.++++|++|++++|......|.. +..+++|++|++++|......|..++
T Consensus 96 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 175 (455)
T 3v47_A 96 TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL 175 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSG
T ss_pred hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhh
Confidence 6778888888888888888774 3443 777888888888887744444554 77888888888888855555555555
Q ss_pred CC--CCcccCCCeeeCCccCCCCcccc-----cccccCCCCCcceecCCCCCCChhhhhhccccccccccceEEEecccc
Q 003773 526 RL--TSLRTLEKFVVGGGVDGGSTCRL-----ESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLHLEFGRVV 598 (796)
Q Consensus 526 ~l--~~L~~L~~~~~~~~~~~~~~~~l-----~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 598 (796)
.+ .+|+.|++ ..+.........+ ..+..++.|+.+.+.+..-....+. .........+|+.|+++.+...
T Consensus 176 ~l~~~~L~~L~l--~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~ 252 (455)
T 3v47_A 176 NFQGKHFTLLRL--SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK-RFFDAIAGTKIQSLILSNSYNM 252 (455)
T ss_dssp GGTTCEEEEEEC--TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH-HHHHHTTTCCEEEEECTTCTTT
T ss_pred cccccccccccc--ccCcccccchhhccccccccccccceeeeEecCCCcccccchh-hhhccccccceeeEeecccccc
Confidence 54 45555542 2222111111110 1122333444444444211100111 1111122356777776665432
Q ss_pred CCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCC-CchhhhccCCcEEEEcCCCCCCCCCc-cccc-cccceec
Q 003773 599 DGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIF-PKWLTLLTNLRELKLFSCVNCEHLPP-LGKL-LLEKLTL 675 (796)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~lp~-l~~l-~L~~L~l 675 (796)
+............. ..... ...++|+.|+++++..... |.++..+++|++|+|++|...+..|. ++.+ +|+.|++
T Consensus 253 ~~~~~~~~~~~~~~-~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 330 (455)
T 3v47_A 253 GSSFGHTNFKDPDN-FTFKG-LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330 (455)
T ss_dssp SCCTTCCSSCCCCT-TTTGG-GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccchhhhccCcc-ccccc-ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEEC
Confidence 21110000000000 00000 1236899999999987654 77788999999999999965554453 7788 9999999
Q ss_pred cccccceEeCccccCCCCCCccCCCCCCcccCCCccceeeccccccccccccccccccccCCCCccceeeccCCCCCCCC
Q 003773 676 YNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVL 755 (796)
Q Consensus 676 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 755 (796)
++|......+.. +..+++|++|+++++ .+.+..|..+..+++|++|++++| .++.+
T Consensus 331 s~N~l~~~~~~~-----------------~~~l~~L~~L~Ls~N------~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~ 386 (455)
T 3v47_A 331 SQNFLGSIDSRM-----------------FENLDKLEVLDLSYN------HIRALGDQSFLGLPNLKELALDTN-QLKSV 386 (455)
T ss_dssp CSSCCCEECGGG-----------------GTTCTTCCEEECCSS------CCCEECTTTTTTCTTCCEEECCSS-CCSCC
T ss_pred CCCccCCcChhH-----------------hcCcccCCEEECCCC------cccccChhhccccccccEEECCCC-ccccC
Confidence 988643322222 347899999977776 334444778889999999999999 56666
Q ss_pred Cc-CCCCCCCccEEEEcCCCchhh
Q 003773 756 PD-HLLQTTTLQELSIRGCPILEE 778 (796)
Q Consensus 756 p~-~~~~l~~L~~L~l~~~~~l~~ 778 (796)
|. .+..+++|+.|++++|+.-.+
T Consensus 387 ~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 387 PDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CHhHhccCCcccEEEccCCCcccC
Confidence 65 457899999999999986433
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=7.5e-23 Score=241.74 Aligned_cols=152 Identities=19% Similarity=0.177 Sum_probs=113.1
Q ss_pred CCCceEEEEEeecCCCCCCCCCCCCCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCcccccccc-
Q 003773 371 FGEKVRHLGLNFEGGASFPMSTPEFNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREI- 449 (796)
Q Consensus 371 ~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l- 449 (796)
.+..++.+.+..+.+... ....+.+++.|+.++++. +.....+.+..|.++++|++|+|+ ++.+..+
T Consensus 22 lp~~l~~LdLs~N~i~~i--~~~~~~~l~~L~~LdLs~--n~~~~~i~~~~f~~L~~L~~L~Ls--------~N~l~~~~ 89 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTV--TASSFPFLEQLQLLELGS--QYTPLTIDKEAFRNLPNLRILDLG--------SSKIYFLH 89 (844)
T ss_dssp SCTTCCEEEEESCCCCEE--CSSSCSSCCSCSEEEECT--TCCCCEECTTTTSSCTTCCEEECT--------TCCCCEEC
T ss_pred CCCCcCEEECCCCcCCcc--ChhHCcccccCeEEeCCC--CCCccccCHHHhcCCCCCCEEECC--------CCcCcccC
Confidence 578899999998877642 223455666666666652 234556666778999999999999 5555554
Q ss_pred cccccCccccceEecCCCCccc-cchh--hhccCCccEeeccccccccccc-hhhccccCCCeeecCCccccccCcccCC
Q 003773 450 PENIGKLIHLKYLNLSELCIER-LPET--LCELYNLQKLAVRWCTNLRELP-AGIGKLMNMRSLMNGQTEKLKYLPIGIS 525 (796)
Q Consensus 450 p~~~~~l~~L~~L~l~~~~i~~-lp~~--i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~i~ 525 (796)
|..++++++|++|+|++|.+.. +|.. ++++++|++|+|++|......| ..++++++|++|++++|......|..++
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~ 169 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE 169 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH
T ss_pred HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc
Confidence 8889999999999999999874 5554 8899999999999987544333 5789999999999999865555566665
Q ss_pred CC--CCcccCC
Q 003773 526 RL--TSLRTLE 534 (796)
Q Consensus 526 ~l--~~L~~L~ 534 (796)
.+ ++|+.|+
T Consensus 170 ~l~~~~L~~L~ 180 (844)
T 3j0a_A 170 PLQGKTLSFFS 180 (844)
T ss_dssp HHHHCSSCCCE
T ss_pred cccCCccceEE
Confidence 55 5666665
No 19
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=2.1e-23 Score=241.86 Aligned_cols=152 Identities=18% Similarity=0.203 Sum_probs=111.7
Q ss_pred CCCceEEEEEeecCCCCCCCCCCCCCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCccccccccc
Q 003773 371 FGEKVRHLGLNFEGGASFPMSTPEFNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREIP 450 (796)
Q Consensus 371 ~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp 450 (796)
.+..++.+.+..+.....+. ..+.+++.|+.++++ .+......+..|.++++|++|+++ ++.+..+|
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls---~n~l~~~~~~~~~~l~~L~~L~L~--------~n~l~~l~ 89 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPA--ANFTRYSQLTSLDVG---FNTISKLEPELCQKLPMLKVLNLQ--------HNELSQLS 89 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCG--GGGGGGTTCSEEECC---SSCCCCCCTTHHHHCTTCCEEECC--------SSCCCCCC
T ss_pred cCCCCcEEECCCCCCCCcCH--HHHhCCCcCcEEECC---CCccCccCHHHHhcccCcCEEECC--------CCccCccC
Confidence 45788999998887664322 235555555566665 223344556668889999999999 66677777
Q ss_pred c-cccCccccceEecCCCCccccc-hhhhccCCccEeeccccccccccchhhccccCCCeeecCCccccccCcccC--CC
Q 003773 451 E-NIGKLIHLKYLNLSELCIERLP-ETLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTEKLKYLPIGI--SR 526 (796)
Q Consensus 451 ~-~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i--~~ 526 (796)
. .++++++|++|++++|.+..+| ..++++++|++|++++|......|..++.+++|++|++++|......|..+ ..
T Consensus 90 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 169 (680)
T 1ziw_A 90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169 (680)
T ss_dssp TTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGT
T ss_pred hhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccc
Confidence 6 5899999999999999998877 468999999999999987655667778899999999999984333333333 35
Q ss_pred CCCcccCCC
Q 003773 527 LTSLRTLEK 535 (796)
Q Consensus 527 l~~L~~L~~ 535 (796)
+++|+.|++
T Consensus 170 ~~~L~~L~L 178 (680)
T 1ziw_A 170 NSSLKKLEL 178 (680)
T ss_dssp TCEESEEEC
T ss_pred cccccEEEC
Confidence 578888863
No 20
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=4.3e-23 Score=218.25 Aligned_cols=283 Identities=18% Similarity=0.178 Sum_probs=175.8
Q ss_pred hhcCcccceeeecccccCCCcccccccccccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhc
Q 003773 422 FSKVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIG 501 (796)
Q Consensus 422 ~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~ 501 (796)
+..+++|++|+++ ++.+..+|. +..+++|++|++++|.++.+| .+.++++|++|++++|. +..+|. +.
T Consensus 62 ~~~~~~L~~L~l~--------~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~-i~~~~~-~~ 129 (347)
T 4fmz_A 62 IEYLTNLEYLNLN--------GNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDN-ISDISP-LA 129 (347)
T ss_dssp GGGCTTCCEEECC--------SSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSC-CCCCGG-GT
T ss_pred hhhcCCccEEEcc--------CCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCc-ccCchh-hc
Confidence 4455566666666 444444444 556666666666666655554 35566666666666554 444444 55
Q ss_pred cccCCCeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhccc
Q 003773 502 KLMNMRSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQL 581 (796)
Q Consensus 502 ~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l 581 (796)
.+++|++|++++|.....++. ++.+++|+.|++ ..+... .+..+..+++|+.+.+.+..- . ... .+
T Consensus 130 ~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l--~~~~~~-----~~~~~~~l~~L~~L~l~~n~l-~---~~~--~~ 195 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTV--TESKVK-----DVTPIANLTDLYSLSLNYNQI-E---DIS--PL 195 (347)
T ss_dssp TCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEEC--CSSCCC-----CCGGGGGCTTCSEEECTTSCC-C---CCG--GG
T ss_pred cCCceeEEECCCCCCcccccc-hhhCCCCcEEEe--cCCCcC-----CchhhccCCCCCEEEccCCcc-c---ccc--cc
Confidence 666666666666644443332 555555655542 111111 111133444444444443211 1 111 15
Q ss_pred cccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCCC
Q 003773 582 YNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCEH 661 (796)
Q Consensus 582 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~ 661 (796)
..+++|+.|+++.+.+.+. ..+..+++|+.|++++|....+|. +..+++|++|++++| .+..
T Consensus 196 ~~l~~L~~L~l~~n~l~~~----------------~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~ 257 (347)
T 4fmz_A 196 ASLTSLHYFTAYVNQITDI----------------TPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTN-QISD 257 (347)
T ss_dssp GGCTTCCEEECCSSCCCCC----------------GGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCC
T ss_pred cCCCccceeecccCCCCCC----------------chhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCC-ccCC
Confidence 5677788888877764321 114566789999999988887776 778999999999998 4555
Q ss_pred CCccccc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeeccccccccccccccccccccCCCCc
Q 003773 662 LPPLGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPR 740 (796)
Q Consensus 662 lp~l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~ 740 (796)
++.+..+ +|+.|++++|.. ..++ .+..+++|+.|++++| .+ .+..+..+..+++
T Consensus 258 ~~~~~~l~~L~~L~l~~n~l-~~~~------------------~~~~l~~L~~L~L~~n-~l-----~~~~~~~l~~l~~ 312 (347)
T 4fmz_A 258 INAVKDLTKLKMLNVGSNQI-SDIS------------------VLNNLSQLNSLFLNNN-QL-----GNEDMEVIGGLTN 312 (347)
T ss_dssp CGGGTTCTTCCEEECCSSCC-CCCG------------------GGGGCTTCSEEECCSS-CC-----CGGGHHHHHTCTT
T ss_pred ChhHhcCCCcCEEEccCCcc-CCCh------------------hhcCCCCCCEEECcCC-cC-----CCcChhHhhcccc
Confidence 6777777 899999988753 2221 1347899999988876 33 3334566788999
Q ss_pred cceeeccCCCCCCCCCcCCCCCCCccEEEEcCCCc
Q 003773 741 LSSLEIDCCSKLNVLPDHLLQTTTLQELSIRGCPI 775 (796)
Q Consensus 741 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~ 775 (796)
|++|++++|+ +..++. +..+++|++|++++|+.
T Consensus 313 L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 313 LTTLFLSQNH-ITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp CSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC--
T ss_pred CCEEEccCCc-cccccC-hhhhhccceeehhhhcc
Confidence 9999999996 555554 77899999999999984
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=1.7e-22 Score=231.00 Aligned_cols=129 Identities=16% Similarity=-0.011 Sum_probs=74.4
Q ss_pred CceEEEEEeecCCCCCCCCCCCCCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCcccccccc-cc
Q 003773 373 EKVRHLGLNFEGGASFPMSTPEFNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREI-PE 451 (796)
Q Consensus 373 ~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-p~ 451 (796)
..++.+.+..+..... ....|.+++.|+.++++ .+......+..|.++++|++|+++ ++.+..+ |.
T Consensus 57 ~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls---~n~l~~~~~~~~~~l~~L~~L~L~--------~n~i~~l~~~ 123 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWI--HEDTFQSQHRLDTLVLT---ANPLIFMAETALSGPKALKHLFFI--------QTGISSIDFI 123 (606)
T ss_dssp TTCSEEECTTCCCCEE--CTTTTTTCTTCCEEECT---TCCCSEECTTTTSSCTTCCEEECT--------TSCCSCGGGS
T ss_pred ccceEEECCCCcccee--ChhhccCccccCeeeCC---CCcccccChhhhcccccccEeecc--------ccCcccCCcc
Confidence 4567777766655421 12234445555555554 222333444456777777777777 4445554 45
Q ss_pred cccCccccceEecCCCCccccc-hhhhccCCccEeeccccccccccchhhccccCCC--eeecCCc
Q 003773 452 NIGKLIHLKYLNLSELCIERLP-ETLCELYNLQKLAVRWCTNLRELPAGIGKLMNMR--SLMNGQT 514 (796)
Q Consensus 452 ~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~--~L~l~~~ 514 (796)
.++++++|++|++++|.+..++ +.+..+++|++|++++|......|..++.+++|+ .|++++|
T Consensus 124 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 124 PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred hhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence 5667777777777777766542 2334467777777776653333345566666666 5666666
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=1.1e-22 Score=218.76 Aligned_cols=306 Identities=18% Similarity=0.109 Sum_probs=225.7
Q ss_pred CCCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCccccccccc-ccccCccccceEecCCCCcccc
Q 003773 394 EFNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREIP-ENIGKLIHLKYLNLSELCIERL 472 (796)
Q Consensus 394 ~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~l 472 (796)
.+.+++.|.+.+ +....++..+|.++++|++|+++ ++.+..++ ..++.+++|++|++++|.++.+
T Consensus 43 ~l~~l~~l~l~~------~~l~~l~~~~~~~l~~L~~L~L~--------~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 108 (390)
T 3o6n_A 43 TLNNQKIVTFKN------STMRKLPAALLDSFRQVELLNLN--------DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL 108 (390)
T ss_dssp GGCCCSEEEEES------CEESEECTHHHHHCCCCSEEECT--------TSCCCEECTTTTTTCTTCCEEECCSSCCCCC
T ss_pred ccCCceEEEecC------CchhhCChhHhcccccCcEEECC--------CCcccccChhhccCCCCcCEEECCCCCCCcC
Confidence 456666666544 33556677778999999999999 56666664 5789999999999999999987
Q ss_pred ch-hhhccCCccEeeccccccccccchh-hccccCCCeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCcccc
Q 003773 473 PE-TLCELYNLQKLAVRWCTNLRELPAG-IGKLMNMRSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRL 550 (796)
Q Consensus 473 p~-~i~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l 550 (796)
|. .++++++|++|++++|. +..+|.. +..+++|++|++++|......|..++.+++|++|++ ..+.... ..
T Consensus 109 ~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l--~~n~l~~---~~- 181 (390)
T 3o6n_A 109 PPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL--SSNRLTH---VD- 181 (390)
T ss_dssp CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEEC--CSSCCSB---CC-
T ss_pred CHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEEC--CCCcCCc---cc-
Confidence 65 58999999999999986 6678776 589999999999999554445566899999999974 3333221 12
Q ss_pred cccccCCCCCcceecCCCCCCChhhhhhccccccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEE
Q 003773 551 ESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWI 630 (796)
Q Consensus 551 ~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 630 (796)
+..+..|+.+.+.+. .+. .+...++|+.|+++.|.+.... ...+++|+.|++
T Consensus 182 --~~~l~~L~~L~l~~n----~l~-----~~~~~~~L~~L~l~~n~l~~~~-----------------~~~~~~L~~L~l 233 (390)
T 3o6n_A 182 --LSLIPSLFHANVSYN----LLS-----TLAIPIAVEELDASHNSINVVR-----------------GPVNVELTILKL 233 (390)
T ss_dssp --GGGCTTCSEEECCSS----CCS-----EEECCSSCSEEECCSSCCCEEE-----------------CCCCSSCCEEEC
T ss_pred --cccccccceeecccc----ccc-----ccCCCCcceEEECCCCeeeecc-----------------ccccccccEEEC
Confidence 333444554444432 111 1334568899999888753311 123468999999
Q ss_pred eecCCCCCCchhhhccCCcEEEEcCCCCCCCCCc-cccc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCC
Q 003773 631 LFYGGNIFPKWLTLLTNLRELKLFSCVNCEHLPP-LGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAF 708 (796)
Q Consensus 631 ~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~-l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (796)
+++..... .++..+++|++|++++|...+..|. +..+ +|+.|+++++.. ..++.. ...+
T Consensus 234 ~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~-----------------~~~l 294 (390)
T 3o6n_A 234 QHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLY-----------------GQPI 294 (390)
T ss_dssp CSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC-CEEECS-----------------SSCC
T ss_pred CCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcC-cccCcc-----------------cCCC
Confidence 99998775 6788999999999999965554454 7778 999999998763 333221 2378
Q ss_pred CccceeeccccccccccccccccccccCCCCccceeeccCCCCCCCCCcCCCCCCCccEEEEcCCCchh
Q 003773 709 PKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLPDHLLQTTTLQELSIRGCPILE 777 (796)
Q Consensus 709 ~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~ 777 (796)
|+|+.|+++++ .++.. |..+..+++|++|++++|+ +..+| +..+++|+.|++++|+.-.
T Consensus 295 ~~L~~L~L~~n-~l~~~------~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 295 PTLKVLDLSHN-HLLHV------ERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp TTCCEEECCSS-CCCCC------GGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred CCCCEEECCCC-cceec------CccccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCCccc
Confidence 99999998887 55533 5567789999999999995 66665 5678999999999998543
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=3.3e-22 Score=220.03 Aligned_cols=325 Identities=21% Similarity=0.223 Sum_probs=166.0
Q ss_pred CceEEEEEeecCCCCCCCCCCCCCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCccccccccccc
Q 003773 373 EKVRHLGLNFEGGASFPMSTPEFNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREIPEN 452 (796)
Q Consensus 373 ~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~ 452 (796)
..++.+.+........+ .+..++.|+.++++. +....+++ +.++++|++|+++ ++.+..++.
T Consensus 46 ~~l~~L~l~~~~i~~l~----~~~~l~~L~~L~Ls~---n~l~~~~~--~~~l~~L~~L~l~--------~n~l~~~~~- 107 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSID----GVEYLNNLTQINFSN---NQLTDITP--LKNLTKLVDILMN--------NNQIADITP- 107 (466)
T ss_dssp HTCCEEECCSSCCCCCT----TGGGCTTCCEEECCS---SCCCCCGG--GTTCTTCCEEECC--------SSCCCCCGG-
T ss_pred ccccEEecCCCCCccCc----chhhhcCCCEEECCC---CccCCchh--hhccccCCEEECC--------CCccccChh-
Confidence 34556665555443322 233333444444441 11222222 5666777777776 444555544
Q ss_pred ccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhccccCCCeeecCCccccccCcccCCCCCCccc
Q 003773 453 IGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTEKLKYLPIGISRLTSLRT 532 (796)
Q Consensus 453 ~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 532 (796)
++++++|++|++++|.++.+|. +.++++|++|++++|. +..+|. +..+++|++|+++++ +..++. ++++++|+.
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~~--~~~~~~-~~~l~~L~~ 181 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFGNQ--VTDLKP-LANLTTLER 181 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG-GTTCTTCSEEEEEES--CCCCGG-GTTCTTCCE
T ss_pred hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh-hccCCcccEeecCCc--ccCchh-hccCCCCCE
Confidence 6667777777777776666654 6667777777776665 444442 555666666655422 222222 555555555
Q ss_pred CCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCC------------------ChhhhhhccccccccccceEEEe
Q 003773 533 LEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVS------------------HVDEAERLQLYNKKNLLRLHLEF 594 (796)
Q Consensus 533 L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~------------------~~~~~~~~~l~~~~~L~~L~l~~ 594 (796)
|++ ..+... .+..+..+++|+.+.+.+..-.. .+... ..+..+++|+.|+++.
T Consensus 182 L~l--~~n~l~-----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~ 252 (466)
T 1o6v_A 182 LDI--SSNKVS-----DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLAN 252 (466)
T ss_dssp EEC--CSSCCC-----CCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred EEC--cCCcCC-----CChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCC
Confidence 542 112111 11123333334433333321100 00000 1233444444444444
Q ss_pred ccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCCCCCccccc-cccce
Q 003773 595 GRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCEHLPPLGKL-LLEKL 673 (796)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~l~~l-~L~~L 673 (796)
|.+.+. ..+..+++|+.|++++|....+|. +..+++|++|++++|. +..++.++.+ +|+.|
T Consensus 253 n~l~~~----------------~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L 314 (466)
T 1o6v_A 253 NQISNL----------------APLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQ-LEDISPISNLKNLTYL 314 (466)
T ss_dssp SCCCCC----------------GGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CSCCGGGGGCTTCSEE
T ss_pred Cccccc----------------hhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCc-ccCchhhcCCCCCCEE
Confidence 442210 013344555555555555544443 4455555555555552 3334444444 55555
Q ss_pred eccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeeccccccccccccccccccccCCCCccceeeccCCCCCC
Q 003773 674 TLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLN 753 (796)
Q Consensus 674 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 753 (796)
++++|..... ..+..+++|+.|++++| .++.. ..+..+++|++|++++|+...
T Consensus 315 ~L~~n~l~~~-------------------~~~~~l~~L~~L~l~~n-~l~~~-------~~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 315 TLYFNNISDI-------------------SPVSSLTKLQRLFFYNN-KVSDV-------SSLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp ECCSSCCSCC-------------------GGGGGCTTCCEEECCSS-CCCCC-------GGGTTCTTCCEEECCSSCCCB
T ss_pred ECcCCcCCCc-------------------hhhccCccCCEeECCCC-ccCCc-------hhhccCCCCCEEeCCCCccCc
Confidence 5555432111 11347788888888776 44432 246788999999999985544
Q ss_pred CCCcCCCCCCCccEEEEcCCCchh
Q 003773 754 VLPDHLLQTTTLQELSIRGCPILE 777 (796)
Q Consensus 754 ~lp~~~~~l~~L~~L~l~~~~~l~ 777 (796)
..| +..+++|+.|++++|+...
T Consensus 368 ~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 368 LTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CGG--GTTCTTCCEEECCCEEEEC
T ss_pred cch--hhcCCCCCEEeccCCcccC
Confidence 434 6788999999999887533
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=9.2e-23 Score=230.31 Aligned_cols=147 Identities=17% Similarity=0.108 Sum_probs=87.5
Q ss_pred CCCCCcEEEEeecCCCC-CCchhhhccCCcEEEEcCCCCCCCCC---c-cccc-cccceeccccccceEeCcc-ccCCCC
Q 003773 621 PPLNVEELWILFYGGNI-FPKWLTLLTNLRELKLFSCVNCEHLP---P-LGKL-LLEKLTLYNLISVKRVGDE-FLGIEE 693 (796)
Q Consensus 621 ~~~~L~~L~l~~~~~~~-~p~~~~~l~~L~~L~L~~~~~~~~lp---~-l~~l-~L~~L~l~~~~~l~~~~~~-~~~~~~ 693 (796)
.+++|+.|++++|.... .|.++..+++|++|++++|. +..++ . ++.+ +|+.|++++|.....++.. +..+..
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 44566666666666554 45555566666666666663 33222 1 4455 6666666665533323222 111111
Q ss_pred CC---ccCCCCC-CcccCC-CccceeeccccccccccccccccccccCCCCccceeeccCCCCCCCCCcC-CCCCCCccE
Q 003773 694 SS---VDDTSSS-SSVIAF-PKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLPDH-LLQTTTLQE 767 (796)
Q Consensus 694 ~~---~~~~~~~-~~~~~~-~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~ 767 (796)
+. +.++... .....+ ++|+.|+++++ .++.+ |..+..+++|++|++++| .++.+|.. +..+++|+.
T Consensus 430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~i------p~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~ 501 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSI------PKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQY 501 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCC------CTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCC
T ss_pred CCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCccc------ChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCE
Confidence 11 1111111 112234 58899988776 55533 666668999999999999 56688887 788999999
Q ss_pred EEEcCCCch
Q 003773 768 LSIRGCPIL 776 (796)
Q Consensus 768 L~l~~~~~l 776 (796)
|++++||.-
T Consensus 502 L~l~~N~~~ 510 (562)
T 3a79_B 502 IWLHDNPWD 510 (562)
T ss_dssp EECCSCCBC
T ss_pred EEecCCCcC
Confidence 999999854
No 25
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=3.2e-22 Score=211.57 Aligned_cols=283 Identities=20% Similarity=0.224 Sum_probs=218.8
Q ss_pred hhcCcccceeeecccccCCCcccccccccccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhc
Q 003773 422 FSKVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIG 501 (796)
Q Consensus 422 ~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~ 501 (796)
+..+++|+.|+++ ++.+..+|. ++.+++|++|++++|.++.+|. +.++++|++|++++|. +..+| .+.
T Consensus 40 ~~~l~~L~~L~l~--------~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~ 107 (347)
T 4fmz_A 40 QEELESITKLVVA--------GEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQ 107 (347)
T ss_dssp HHHHTTCSEEECC--------SSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGT
T ss_pred chhcccccEEEEe--------CCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCch-HHc
Confidence 3567899999999 666677764 8899999999999999999987 9999999999999986 66665 599
Q ss_pred cccCCCeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhccc
Q 003773 502 KLMNMRSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQL 581 (796)
Q Consensus 502 ~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l 581 (796)
.+++|++|++++| .+..+|. +..+++|+.|++ ..+.. ...+..+..++.|+.+.+.+..- .... .+
T Consensus 108 ~l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l--~~n~~----~~~~~~~~~l~~L~~L~l~~~~~-~~~~-----~~ 173 (347)
T 4fmz_A 108 NLTNLRELYLNED-NISDISP-LANLTKMYSLNL--GANHN----LSDLSPLSNMTGLNYLTVTESKV-KDVT-----PI 173 (347)
T ss_dssp TCTTCSEEECTTS-CCCCCGG-GTTCTTCCEEEC--TTCTT----CCCCGGGTTCTTCCEEECCSSCC-CCCG-----GG
T ss_pred CCCcCCEEECcCC-cccCchh-hccCCceeEEEC--CCCCC----cccccchhhCCCCcEEEecCCCc-CCch-----hh
Confidence 9999999999999 5666665 888999999973 22222 12233456667777777666432 1111 16
Q ss_pred cccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCCC
Q 003773 582 YNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCEH 661 (796)
Q Consensus 582 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~ 661 (796)
..+++|+.|++++|.+.+. ..+..+++|+.|++.++....++. +..+++|++|++++|. +..
T Consensus 174 ~~l~~L~~L~l~~n~l~~~----------------~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~-l~~ 235 (347)
T 4fmz_A 174 ANLTDLYSLSLNYNQIEDI----------------SPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNK-ITD 235 (347)
T ss_dssp GGCTTCSEEECTTSCCCCC----------------GGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCC
T ss_pred ccCCCCCEEEccCCccccc----------------ccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCc-cCC
Confidence 7889999999998875431 115567899999999999887665 7789999999999995 555
Q ss_pred CCccccc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeeccccccccccccccccccccCCCCc
Q 003773 662 LPPLGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPR 740 (796)
Q Consensus 662 lp~l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~ 740 (796)
++.+..+ +|+.|++++|... .++ .+..+++|+.|++++| .++.+ ..+..+++
T Consensus 236 ~~~~~~l~~L~~L~l~~n~l~-~~~------------------~~~~l~~L~~L~l~~n-~l~~~-------~~~~~l~~ 288 (347)
T 4fmz_A 236 LSPLANLSQLTWLEIGTNQIS-DIN------------------AVKDLTKLKMLNVGSN-QISDI-------SVLNNLSQ 288 (347)
T ss_dssp CGGGTTCTTCCEEECCSSCCC-CCG------------------GGTTCTTCCEEECCSS-CCCCC-------GGGGGCTT
T ss_pred CcchhcCCCCCEEECCCCccC-CCh------------------hHhcCCCcCEEEccCC-ccCCC-------hhhcCCCC
Confidence 6667788 9999999987532 221 1347899999999887 55543 24678999
Q ss_pred cceeeccCCCCCCCCCcCCCCCCCccEEEEcCCCc
Q 003773 741 LSSLEIDCCSKLNVLPDHLLQTTTLQELSIRGCPI 775 (796)
Q Consensus 741 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~ 775 (796)
|++|++++|+.....|..+..+++|++|++++|+.
T Consensus 289 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp CSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred CCEEECcCCcCCCcChhHhhccccCCEEEccCCcc
Confidence 99999999966556666778899999999999984
No 26
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=2.2e-22 Score=209.76 Aligned_cols=232 Identities=25% Similarity=0.303 Sum_probs=170.0
Q ss_pred cCcccceeeecccccCCCcccccccccccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhccc
Q 003773 424 KVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGKL 503 (796)
Q Consensus 424 ~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l 503 (796)
....++.|+++ ++.+..+|..++++++|++|++++|.++.+|..++++++|++|+|++|. +..+|..++.+
T Consensus 79 ~~~~l~~L~L~--------~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l 149 (328)
T 4fcg_A 79 TQPGRVALELR--------SVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASL 149 (328)
T ss_dssp TSTTCCEEEEE--------SSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGC
T ss_pred cccceeEEEcc--------CCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcC
Confidence 35789999999 6777789999999999999999999999999999999999999999987 55889999999
Q ss_pred cCCCeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhccccc
Q 003773 504 MNMRSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYN 583 (796)
Q Consensus 504 ~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~ 583 (796)
++|++|++++|.....+|..++... . . ..+.+
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~-------------~----~-------------------------------~~~~~ 181 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTD-------------A----S-------------------------------GEHQG 181 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC------------------C-------------------------------CCEEE
T ss_pred cCCCEEECCCCCCccccChhHhhcc-------------c----h-------------------------------hhhcc
Confidence 9999999999877777765443200 0 0 01223
Q ss_pred cccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCCCCC
Q 003773 584 KKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCEHLP 663 (796)
Q Consensus 584 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp 663 (796)
+++|+.|+++ +|.+..+|.++..+++|++|+|++|... .+|
T Consensus 182 l~~L~~L~L~--------------------------------------~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~ 222 (328)
T 4fcg_A 182 LVNLQSLRLE--------------------------------------WTGIRSLPASIANLQNLKSLKIRNSPLS-ALG 222 (328)
T ss_dssp STTCCEEEEE--------------------------------------EECCCCCCGGGGGCTTCCEEEEESSCCC-CCC
T ss_pred CCCCCEEECc--------------------------------------CCCcCcchHhhcCCCCCCEEEccCCCCC-cCc
Confidence 3344444444 4444455666666666666666666433 333
Q ss_pred c-cccc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeeccccccccccccccccccccCCCCcc
Q 003773 664 P-LGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRL 741 (796)
Q Consensus 664 ~-l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L 741 (796)
. ++.+ +|+.|++++|.....++.. ++.+++|+.|++++|..+. ..|..+..+++|
T Consensus 223 ~~l~~l~~L~~L~Ls~n~~~~~~p~~-----------------~~~l~~L~~L~L~~n~~~~------~~p~~~~~l~~L 279 (328)
T 4fcg_A 223 PAIHHLPKLEELDLRGCTALRNYPPI-----------------FGGRAPLKRLILKDCSNLL------TLPLDIHRLTQL 279 (328)
T ss_dssp GGGGGCTTCCEEECTTCTTCCBCCCC-----------------TTCCCCCCEEECTTCTTCC------BCCTTGGGCTTC
T ss_pred hhhccCCCCCEEECcCCcchhhhHHH-----------------hcCCCCCCEEECCCCCchh------hcchhhhcCCCC
Confidence 3 5555 6666666666554444332 3477889999887764433 336778899999
Q ss_pred ceeeccCCCCCCCCCcCCCCCCCccEEEEcCCC
Q 003773 742 SSLEIDCCSKLNVLPDHLLQTTTLQELSIRGCP 774 (796)
Q Consensus 742 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 774 (796)
++|+|++|+.++.+|..+.++++|+.+++..+.
T Consensus 280 ~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 280 EKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp CEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred CEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 999999999999999999999999999998654
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=2.4e-22 Score=222.27 Aligned_cols=281 Identities=18% Similarity=0.199 Sum_probs=161.7
Q ss_pred hhhHHHhhhcCcccceeeecccccCCCcccccccc-cccccCccccceEecCCCCccccchh-hhccCCccEeecccccc
Q 003773 415 GSILVELFSKVACLRALVIRQWFVPLDDQNFIREI-PENIGKLIHLKYLNLSELCIERLPET-LCELYNLQKLAVRWCTN 492 (796)
Q Consensus 415 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~ 492 (796)
..+.+..|.++++|++|+|+ ++.+..+ |..++++++|++|+|++|.++.+|.. +.++++|++|+|++|..
T Consensus 45 ~~~~~~~~~~l~~L~~L~L~--------~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i 116 (477)
T 2id5_A 45 KTLNQDEFASFPHLEELELN--------ENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116 (477)
T ss_dssp CEECTTTTTTCTTCCEEECT--------TSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCC
T ss_pred ceECHhHccCCCCCCEEECC--------CCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcc
Confidence 34444557777788888887 4455544 66777788888888888877777754 57778888888887765
Q ss_pred ccccchhhccccCCCeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCC
Q 003773 493 LRELPAGIGKLMNMRSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSH 572 (796)
Q Consensus 493 ~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~ 572 (796)
....|..+..+++|++|++++|......|..++.+++|+.|+ ...+.......
T Consensus 117 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--l~~n~l~~~~~------------------------- 169 (477)
T 2id5_A 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT--LEKCNLTSIPT------------------------- 169 (477)
T ss_dssp CEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE--EESCCCSSCCH-------------------------
T ss_pred ccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE--CCCCcCcccCh-------------------------
Confidence 455566677778888888877754444455677777777775 23332211111
Q ss_pred hhhhhhccccccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCC-CCCCchhhhccCCcEE
Q 003773 573 VDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGG-NIFPKWLTLLTNLREL 651 (796)
Q Consensus 573 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~p~~~~~l~~L~~L 651 (796)
..+..+++|+.|++..|.+.... ...+..+++|+.|+++++.. ..+|.......+|++|
T Consensus 170 ------~~l~~l~~L~~L~l~~n~i~~~~--------------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 229 (477)
T 2id5_A 170 ------EALSHLHGLIVLRLRHLNINAIR--------------DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL 229 (477)
T ss_dssp ------HHHTTCTTCCEEEEESCCCCEEC--------------TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEE
T ss_pred ------hHhcccCCCcEEeCCCCcCcEeC--------------hhhcccCcccceeeCCCCccccccCcccccCccccEE
Confidence 12333444445555444432110 01233445555555555432 2234444444466666
Q ss_pred EEcCCCCCCCCCc--cccc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeeccccccccccccc
Q 003773 652 KLFSCVNCEHLPP--LGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYR 728 (796)
Q Consensus 652 ~L~~~~~~~~lp~--l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~ 728 (796)
+|++|. +..+|. +..+ +|+.|+++++.. ..++... +..+++|+.|+++++ .+.
T Consensus 230 ~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~----------------~~~l~~L~~L~L~~n------~l~ 285 (477)
T 2id5_A 230 SITHCN-LTAVPYLAVRHLVYLRFLNLSYNPI-STIEGSM----------------LHELLRLQEIQLVGG------QLA 285 (477)
T ss_dssp EEESSC-CCSCCHHHHTTCTTCCEEECCSSCC-CEECTTS----------------CTTCTTCCEEECCSS------CCS
T ss_pred ECcCCc-ccccCHHHhcCccccCeeECCCCcC-CccChhh----------------ccccccCCEEECCCC------ccc
Confidence 666663 334442 4555 566666665542 2222111 235667777755554 233
Q ss_pred cccccccCCCCccceeeccCCCCCCCCCc-CCCCCCCccEEEEcCCCc
Q 003773 729 VTRKENISIMPRLSSLEIDCCSKLNVLPD-HLLQTTTLQELSIRGCPI 775 (796)
Q Consensus 729 ~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~ 775 (796)
+..+..+..+++|++|+|++| .++.+|. .+..+++|++|++++||.
T Consensus 286 ~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 286 VVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp EECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred eECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCc
Confidence 333556667777777777777 4555554 345677777777777774
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=2.8e-22 Score=227.52 Aligned_cols=304 Identities=18% Similarity=0.129 Sum_probs=225.6
Q ss_pred CCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCccccccccc-ccccCccccceEecCCCCccccc
Q 003773 395 FNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREIP-ENIGKLIHLKYLNLSELCIERLP 473 (796)
Q Consensus 395 ~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp 473 (796)
+.+++.|.+ . .+....++..+|.++++|++|+|+ ++.+..+| ..++.+++|++|+|++|.++.+|
T Consensus 50 l~~l~~l~l---~---~~~l~~lp~~~~~~l~~L~~L~L~--------~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 115 (597)
T 3oja_B 50 LNNQKIVTF---K---NSTMRKLPAALLDSFRQVELLNLN--------DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP 115 (597)
T ss_dssp GCCCSEEEE---S---SCEESEECTHHHHHCCCCSEEECT--------TSCCCEECTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCceEEEe---e---CCCCCCcCHHHHccCCCCcEEECC--------CCCCCCCChHHhcCCCCCCEEECCCCcCCCCC
Confidence 455555544 3 344566778888999999999999 56666664 58999999999999999999887
Q ss_pred h-hhhccCCccEeeccccccccccchh-hccccCCCeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCccccc
Q 003773 474 E-TLCELYNLQKLAVRWCTNLRELPAG-IGKLMNMRSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLE 551 (796)
Q Consensus 474 ~-~i~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~ 551 (796)
. .++++++|++|+|++|. +..+|.. |+.+++|++|++++|......|..++.+++|++|++ .++..... .
T Consensus 116 ~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L--~~N~l~~~---~-- 187 (597)
T 3oja_B 116 PHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL--SSNRLTHV---D-- 187 (597)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC--TTSCCSBC---C--
T ss_pred HHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEEC--cCCCCCCc---C--
Confidence 6 46999999999999986 6677765 589999999999999655555667999999999973 33333211 2
Q ss_pred ccccCCCCCcceecCCCCCCChhhhhhccccccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEe
Q 003773 552 SLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWIL 631 (796)
Q Consensus 552 ~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 631 (796)
+..+..|+.+.+.+. .+. .+....+|+.|++++|.+....+ ..+++|+.|+++
T Consensus 188 -~~~l~~L~~L~l~~n----~l~-----~l~~~~~L~~L~ls~n~l~~~~~-----------------~~~~~L~~L~L~ 240 (597)
T 3oja_B 188 -LSLIPSLFHANVSYN----LLS-----TLAIPIAVEELDASHNSINVVRG-----------------PVNVELTILKLQ 240 (597)
T ss_dssp -GGGCTTCSEEECCSS----CCS-----EEECCTTCSEEECCSSCCCEEEC-----------------SCCSCCCEEECC
T ss_pred -hhhhhhhhhhhcccC----ccc-----cccCCchhheeeccCCccccccc-----------------ccCCCCCEEECC
Confidence 233444444444432 111 13445689999998887532111 123689999999
Q ss_pred ecCCCCCCchhhhccCCcEEEEcCCCCCCCCCc-cccc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCC
Q 003773 632 FYGGNIFPKWLTLLTNLRELKLFSCVNCEHLPP-LGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFP 709 (796)
Q Consensus 632 ~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~-l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (796)
+|.+.. +.++..+++|+.|+|++|...+..|. ++.+ +|+.|++++|... .++.. ...+|
T Consensus 241 ~n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~-----------------~~~l~ 301 (597)
T 3oja_B 241 HNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLY-----------------GQPIP 301 (597)
T ss_dssp SSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC-EEECS-----------------SSCCT
T ss_pred CCCCCC-ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC-CCCcc-----------------cccCC
Confidence 999876 57888999999999999976655555 7888 9999999987643 33221 23689
Q ss_pred ccceeeccccccccccccccccccccCCCCccceeeccCCCCCCCCCcCCCCCCCccEEEEcCCCch
Q 003773 710 KLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLPDHLLQTTTLQELSIRGCPIL 776 (796)
Q Consensus 710 ~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l 776 (796)
+|+.|++++| .+..+ |..+..+++|++|+|++|+ +..+| +..+++|+.|++++|+.-
T Consensus 302 ~L~~L~Ls~N-~l~~i------~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 302 TLKVLDLSHN-HLLHV------ERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp TCCEEECCSS-CCCCC------GGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCEE
T ss_pred CCcEEECCCC-CCCcc------CcccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCCCC
Confidence 9999988887 44432 6667889999999999995 55665 567899999999999964
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=6.8e-22 Score=223.19 Aligned_cols=365 Identities=15% Similarity=0.085 Sum_probs=203.4
Q ss_pred EEEEEeecCCCCCCCCCCCCCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCcccccccc-ccccc
Q 003773 376 RHLGLNFEGGASFPMSTPEFNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREI-PENIG 454 (796)
Q Consensus 376 ~~l~l~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-p~~~~ 454 (796)
+.+.+........+... .++++.| +++ .+.+..+++..|.++++|++|+++ ++.+..+ |..++
T Consensus 34 ~~l~ls~~~L~~ip~~~--~~~L~~L---~Ls---~N~i~~~~~~~~~~l~~L~~L~Ls--------~N~l~~~~~~~~~ 97 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDL--PPRTKAL---SLS---QNSISELRMPDISFLSELRVLRLS--------HNRIRSLDFHVFL 97 (562)
T ss_dssp CEEECTTSCCCSCCTTS--CTTCCEE---ECC---SSCCCCCCGGGTTTCTTCCEEECC--------SCCCCEECTTTTT
T ss_pred cEEEcCCCCCccCCCCC--CCCcCEE---ECC---CCCccccChhhhccCCCccEEECC--------CCCCCcCCHHHhC
Confidence 56666666655444332 2444444 443 223344555567888888888888 5555555 66788
Q ss_pred CccccceEecCCCCccccchhhhccCCccEeecccccccc-ccchhhccccCCCeeecCCccccccCcccCCCCCCc--c
Q 003773 455 KLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLR-ELPAGIGKLMNMRSLMNGQTEKLKYLPIGISRLTSL--R 531 (796)
Q Consensus 455 ~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L--~ 531 (796)
++++|++|++++|.++.+|.. .+++|++|++++|.... .+|..++.+++|++|++++|.. .. ..++.+++| +
T Consensus 98 ~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l-~~--~~~~~l~~L~L~ 172 (562)
T 3a79_B 98 FNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF-RQ--LDLLPVAHLHLS 172 (562)
T ss_dssp TCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC-CT--TTTGGGTTSCEE
T ss_pred CCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcc-cc--Cchhhhhhceee
Confidence 888888888888888888876 78888888888876332 2346788888888888888743 22 234445555 6
Q ss_pred cCCCeeeCCcc--CCCCcccccccc-----------------------cCCCCCcceecCCCCC-CChhhhhhccc----
Q 003773 532 TLEKFVVGGGV--DGGSTCRLESLK-----------------------NLQLLRECRVEGLSNV-SHVDEAERLQL---- 581 (796)
Q Consensus 532 ~L~~~~~~~~~--~~~~~~~l~~l~-----------------------~L~~L~~l~l~~l~~~-~~~~~~~~~~l---- 581 (796)
.|++ ..+.. ....+..+..+. .+..|+.+.+...... ..... ....+
T Consensus 173 ~L~L--~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~ 249 (562)
T 3a79_B 173 CILL--DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGP 249 (562)
T ss_dssp EEEE--EESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCS
T ss_pred EEEe--ecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccC
Confidence 6653 22222 222222222221 2223333333221000 00000 00001
Q ss_pred -----------------------cccccccceEEEeccccCCCCCcC-----c-cCc-----------hhHHHHHhhCCC
Q 003773 582 -----------------------YNKKNLLRLHLEFGRVVDGEGEEG-----R-RKN-----------EKDKQLLEALQP 621 (796)
Q Consensus 582 -----------------------~~~~~L~~L~l~~~~~~~~~~~~~-----~-~~~-----------~~~~~~~~~l~~ 621 (796)
...++|+.|+++.|.+.+...... . ... .........+..
T Consensus 250 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~ 329 (562)
T 3a79_B 250 TLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA 329 (562)
T ss_dssp SCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHH
T ss_pred cceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhc
Confidence 112367777777766543221110 0 000 000011111111
Q ss_pred CCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCCCCCc-cccc-cccceeccccccceEeC---ccccCCC---C
Q 003773 622 PLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCEHLPP-LGKL-LLEKLTLYNLISVKRVG---DEFLGIE---E 693 (796)
Q Consensus 622 ~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~-l~~l-~L~~L~l~~~~~l~~~~---~~~~~~~---~ 693 (796)
.++|+.|+++++.....+. ...+++|++|++++|...+.+|. ++.+ +|+.|+++++.. ..++ ..+..+. .
T Consensus 330 ~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~~~l~~L~~ 407 (562)
T 3a79_B 330 EMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL-KNFFKVALMTKNMSSLET 407 (562)
T ss_dssp TCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCC-CBTTHHHHTTTTCTTCCE
T ss_pred cCcceEEEccCCCcccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCc-CCcccchhhhcCCCCCCE
Confidence 2457777777766543321 15688999999999976665655 7788 899999998753 3222 2222222 2
Q ss_pred CCccCCCCC-----CcccCCCccceeeccccccccccccccccccccCCCCccceeeccCCCCCCCCCcCCCCCCCccEE
Q 003773 694 SSVDDTSSS-----SSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLPDHLLQTTTLQEL 768 (796)
Q Consensus 694 ~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L 768 (796)
+.+..+... ..+..+++|+.|+++++ .++ +..+..+. ++|++|++++| .++.+|..+..+++|++|
T Consensus 408 L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n-~l~-----~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L 478 (562)
T 3a79_B 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSN-MLT-----GSVFRCLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQEL 478 (562)
T ss_dssp EECTTSCCBSCCSSCCCCCCTTCCEEECCSS-CCC-----GGGGSSCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSEE
T ss_pred EECCCCcCCCccChhhhcCcccCCEEECCCC-CCC-----cchhhhhc--CcCCEEECCCC-cCcccChhhcCCCCCCEE
Confidence 222222211 12445678888877665 232 22233322 69999999999 677899888899999999
Q ss_pred EEcCCCc
Q 003773 769 SIRGCPI 775 (796)
Q Consensus 769 ~l~~~~~ 775 (796)
++++|..
T Consensus 479 ~L~~N~l 485 (562)
T 3a79_B 479 NVASNQL 485 (562)
T ss_dssp ECCSSCC
T ss_pred ECCCCCC
Confidence 9999874
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=6.7e-22 Score=217.57 Aligned_cols=328 Identities=15% Similarity=0.101 Sum_probs=224.0
Q ss_pred EEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCccccc-ccc-cccccCccccceEecCCCCcccc-chhh
Q 003773 400 TLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFI-REI-PENIGKLIHLKYLNLSELCIERL-PETL 476 (796)
Q Consensus 400 ~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l-p~~~~~l~~L~~L~l~~~~i~~l-p~~i 476 (796)
.|+.++++ .+.+....+..|.++++|++|++++ +.+ ..+ |..+.++++|++|++++|.++.+ |..+
T Consensus 31 ~l~~L~Ls---~n~i~~~~~~~~~~l~~L~~L~L~~--------n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 99 (455)
T 3v47_A 31 HVNYVDLS---LNSIAELNETSFSRLQDLQFLKVEQ--------QTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF 99 (455)
T ss_dssp TCCEEECC---SSCCCEECTTTTSSCTTCCEEECCC--------CSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT
T ss_pred ccCEEEec---CCccCcCChhHhccCccccEEECcC--------CcccceECcccccccccCCEEeCCCCccCccChhhc
Confidence 34444554 2334455566689999999999994 444 345 56789999999999999999866 7789
Q ss_pred hccCCccEeeccccccccccchh--hccccCCCeeecCCccccccCccc-CCCCCCcccCCCeeeCCccCCCCccccccc
Q 003773 477 CELYNLQKLAVRWCTNLRELPAG--IGKLMNMRSLMNGQTEKLKYLPIG-ISRLTSLRTLEKFVVGGGVDGGSTCRLESL 553 (796)
Q Consensus 477 ~~l~~L~~L~l~~~~~~~~lp~~--~~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l 553 (796)
+++++|++|++++|......|.. +..+++|++|++++|......|.. ++++++|++|+ ...+......+..+..+
T Consensus 100 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~--L~~n~l~~~~~~~l~~l 177 (455)
T 3v47_A 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD--LTFNKVKSICEEDLLNF 177 (455)
T ss_dssp TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEE--CTTCCBSCCCTTTSGGG
T ss_pred cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEe--CCCCcccccChhhhhcc
Confidence 99999999999998855445554 899999999999999654445665 78999999997 34444433334444433
Q ss_pred ccCCCCCcceecCCCCCC----ChhhhhhccccccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEE
Q 003773 554 KNLQLLRECRVEGLSNVS----HVDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELW 629 (796)
Q Consensus 554 ~~L~~L~~l~l~~l~~~~----~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 629 (796)
.. ..|..+.+....-.. .........+..+++|+.|+++.|.+.+ .....+ ......++|+.|.
T Consensus 178 ~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----------~~~~~~-~~~~~~~~L~~L~ 245 (455)
T 3v47_A 178 QG-KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE----------SMAKRF-FDAIAGTKIQSLI 245 (455)
T ss_dssp TT-CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH----------HHHHHH-HHHTTTCCEEEEE
T ss_pred cc-ccccccccccCcccccchhhccccccccccccceeeeEecCCCcccc----------cchhhh-hccccccceeeEe
Confidence 21 233333433322110 0111111234456789999999887431 112222 2223447899999
Q ss_pred EeecCCCCC-----------Cchhh--hccCCcEEEEcCCCCCCCCCc-cccc-cccceeccccccceEeCccccCCCCC
Q 003773 630 ILFYGGNIF-----------PKWLT--LLTNLRELKLFSCVNCEHLPP-LGKL-LLEKLTLYNLISVKRVGDEFLGIEES 694 (796)
Q Consensus 630 l~~~~~~~~-----------p~~~~--~l~~L~~L~L~~~~~~~~lp~-l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~ 694 (796)
++++..... +..+. ..++|++|++++|...+..|. ++.+ +|+.|++++|......+..
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~------- 318 (455)
T 3v47_A 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA------- 318 (455)
T ss_dssp CTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT-------
T ss_pred eccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhH-------
Confidence 987743211 11112 347999999999976666665 7788 9999999988754333322
Q ss_pred CccCCCCCCcccCCCccceeeccccccccccccccccccccCCCCccceeeccCCCCCCCCCcCCCCCCCccEEEEcCCC
Q 003773 695 SVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLPDHLLQTTTLQELSIRGCP 774 (796)
Q Consensus 695 ~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 774 (796)
+..+++|++|+++++ .+ .+..+..+..+++|++|+|++|......|..+..+++|++|++++|.
T Consensus 319 ----------~~~l~~L~~L~Ls~N-~l-----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 319 ----------FWGLTHLLKLNLSQN-FL-----GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp ----------TTTCTTCCEEECCSS-CC-----CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ----------hcCcccCCEEECCCC-cc-----CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 347899999988776 33 34446778899999999999996655558888999999999999986
Q ss_pred c
Q 003773 775 I 775 (796)
Q Consensus 775 ~ 775 (796)
.
T Consensus 383 l 383 (455)
T 3v47_A 383 L 383 (455)
T ss_dssp C
T ss_pred c
Confidence 4
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=1.9e-22 Score=216.76 Aligned_cols=284 Identities=18% Similarity=0.174 Sum_probs=218.8
Q ss_pred cCcccceeeecccccCCCccccccccccc-ccCccccceEecCCCCccccch-hhhccCCccEeeccccccccccchhhc
Q 003773 424 KVACLRALVIRQWFVPLDDQNFIREIPEN-IGKLIHLKYLNLSELCIERLPE-TLCELYNLQKLAVRWCTNLRELPAGIG 501 (796)
Q Consensus 424 ~~~~L~~L~l~~~~~~~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~ 501 (796)
.+.+++.|+++ ++.+..+|.. +..+++|++|++++|.++.+|. .+.++++|++|++++|......|..++
T Consensus 43 ~l~~l~~l~l~--------~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 114 (390)
T 3o6n_A 43 TLNNQKIVTFK--------NSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 114 (390)
T ss_dssp GGCCCSEEEEE--------SCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccCCceEEEec--------CCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhc
Confidence 36789999999 7788888776 6889999999999999998875 799999999999999884444456689
Q ss_pred cccCCCeeecCCccccccCccc-CCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhcc
Q 003773 502 KLMNMRSLMNGQTEKLKYLPIG-ISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQ 580 (796)
Q Consensus 502 ~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~ 580 (796)
.+++|++|++++| .+..+|.. ++++++|++|++ ..+......+.. +..+++|+.+.+.+.. +.. ..
T Consensus 115 ~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L--~~n~l~~~~~~~---~~~l~~L~~L~l~~n~----l~~---~~ 181 (390)
T 3o6n_A 115 NVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSM--SNNNLERIEDDT---FQATTSLQNLQLSSNR----LTH---VD 181 (390)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC--CSSCCCBCCTTT---TSSCTTCCEEECCSSC----CSB---CC
T ss_pred CCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEEC--CCCccCccChhh---ccCCCCCCEEECCCCc----CCc---cc
Confidence 9999999999999 66778876 589999999973 344433222333 3445556665555421 111 23
Q ss_pred ccccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCC
Q 003773 581 LYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCE 660 (796)
Q Consensus 581 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~ 660 (796)
+..+++|+.|+++.|.+. .+..+++|+.|+++++....+|... +++|+.|++++|. +.
T Consensus 182 ~~~l~~L~~L~l~~n~l~-------------------~~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~-l~ 239 (390)
T 3o6n_A 182 LSLIPSLFHANVSYNLLS-------------------TLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNN-LT 239 (390)
T ss_dssp GGGCTTCSEEECCSSCCS-------------------EEECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSC-CC
T ss_pred cccccccceeeccccccc-------------------ccCCCCcceEEECCCCeeeeccccc--cccccEEECCCCC-Cc
Confidence 567789999999988742 2345678999999999988776543 6899999999995 45
Q ss_pred CCCccccc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeeccccccccccccccccccccCCCC
Q 003773 661 HLPPLGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMP 739 (796)
Q Consensus 661 ~lp~l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~ 739 (796)
..+.++.+ +|+.|+++++......+.. +..+++|+.|+++++ .++.+ +..+..+|
T Consensus 240 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-----------------~~~l~~L~~L~L~~n-~l~~~------~~~~~~l~ 295 (390)
T 3o6n_A 240 DTAWLLNYPGLVEVDLSYNELEKIMYHP-----------------FVKMQRLERLYISNN-RLVAL------NLYGQPIP 295 (390)
T ss_dssp CCGGGGGCTTCSEEECCSSCCCEEESGG-----------------GTTCSSCCEEECCSS-CCCEE------ECSSSCCT
T ss_pred ccHHHcCCCCccEEECCCCcCCCcChhH-----------------ccccccCCEEECCCC-cCccc------CcccCCCC
Confidence 56778888 9999999998754443333 347899999988887 45443 44567899
Q ss_pred ccceeeccCCCCCCCCCcCCCCCCCccEEEEcCCCc
Q 003773 740 RLSSLEIDCCSKLNVLPDHLLQTTTLQELSIRGCPI 775 (796)
Q Consensus 740 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~ 775 (796)
+|++|++++| .+..+|..+..+++|+.|++++|+.
T Consensus 296 ~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 296 TLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSI 330 (390)
T ss_dssp TCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred CCCEEECCCC-cceecCccccccCcCCEEECCCCcc
Confidence 9999999999 6778888888899999999999984
No 32
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=221.43 Aligned_cols=132 Identities=24% Similarity=0.211 Sum_probs=102.0
Q ss_pred chhhHHHhhhcCcccceeeecccccCCCcccccccc-cccccCccccceEecCCCCccccc-hhhhccCCccEeeccccc
Q 003773 414 NGSILVELFSKVACLRALVIRQWFVPLDDQNFIREI-PENIGKLIHLKYLNLSELCIERLP-ETLCELYNLQKLAVRWCT 491 (796)
Q Consensus 414 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~ 491 (796)
...+....|.++++|++|+++ ++.+..+ |..++++++|++|++++|.++.+| ..++++++|++|++++|.
T Consensus 40 l~~~~~~~~~~l~~L~~L~Ls--------~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 111 (570)
T 2z63_A 40 LRHLGSYSFFSFPELQVLDLS--------RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111 (570)
T ss_dssp CCEECTTTTTTCSSCCEEECT--------TCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred cCccChhHhhCCCCceEEECC--------CCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccc
Confidence 444555568999999999999 5556666 567899999999999999999876 579999999999999986
Q ss_pred cccccch-hhccccCCCeeecCCccccc-cCcccCCCCCCcccCCCeeeCCccCCCCcccccccccC
Q 003773 492 NLRELPA-GIGKLMNMRSLMNGQTEKLK-YLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNL 556 (796)
Q Consensus 492 ~~~~lp~-~~~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L 556 (796)
+..+|. .++.+++|++|++++|.... .+|..++++++|++|++ .++......+..+..+.+|
T Consensus 112 -l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l--~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 112 -LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL--SSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp -CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC--TTSCCCEECGGGGHHHHTC
T ss_pred -cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeC--cCCccceecHHHccchhcc
Confidence 666654 68999999999999995443 47899999999999973 3333322223344444444
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=3.8e-21 Score=211.53 Aligned_cols=315 Identities=22% Similarity=0.200 Sum_probs=215.4
Q ss_pred CCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCcccccccccccccCccccceEecCCCCccccch
Q 003773 395 FNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPE 474 (796)
Q Consensus 395 ~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~ 474 (796)
+.+++.|.+.+.. ...++ . +..+++|++|+++ ++.+..+|. ++++++|++|++++|.+..++.
T Consensus 45 l~~l~~L~l~~~~------i~~l~-~-~~~l~~L~~L~Ls--------~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~ 107 (466)
T 1o6v_A 45 LDQVTTLQADRLG------IKSID-G-VEYLNNLTQINFS--------NNQLTDITP-LKNLTKLVDILMNNNQIADITP 107 (466)
T ss_dssp HHTCCEEECCSSC------CCCCT-T-GGGCTTCCEEECC--------SSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred hccccEEecCCCC------CccCc-c-hhhhcCCCEEECC--------CCccCCchh-hhccccCCEEECCCCccccChh
Confidence 5666776654432 12222 2 6789999999999 667777776 9999999999999999999887
Q ss_pred hhhccCCccEeeccccccccccchhhccccCCCeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCcccccccc
Q 003773 475 TLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLK 554 (796)
Q Consensus 475 ~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~ 554 (796)
++++++|++|++++|. +..+|. +..+++|++|++++| .+..+| .++.+++|+.|.+. +.. ..+..+.
T Consensus 108 -~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~l~---~~~-----~~~~~~~ 174 (466)
T 1o6v_A 108 -LANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSN-TISDIS-ALSGLTSLQQLSFG---NQV-----TDLKPLA 174 (466)
T ss_dssp -GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEE-EECCCG-GGTTCTTCSEEEEE---ESC-----CCCGGGT
T ss_pred -hcCCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCC-ccCCCh-hhccCCcccEeecC---Ccc-----cCchhhc
Confidence 9999999999999986 666765 899999999999999 566665 48899999999742 222 1223356
Q ss_pred cCCCCCcceecCCCCCCChhhhhhccccccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecC
Q 003773 555 NLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYG 634 (796)
Q Consensus 555 ~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 634 (796)
+++.|+.+.+.+..- ... ..+..+++|+.|+++.|.+.+.. .+..+++|+.|+++++.
T Consensus 175 ~l~~L~~L~l~~n~l-~~~-----~~l~~l~~L~~L~l~~n~l~~~~----------------~~~~l~~L~~L~l~~n~ 232 (466)
T 1o6v_A 175 NLTTLERLDISSNKV-SDI-----SVLAKLTNLESLIATNNQISDIT----------------PLGILTNLDELSLNGNQ 232 (466)
T ss_dssp TCTTCCEEECCSSCC-CCC-----GGGGGCTTCSEEECCSSCCCCCG----------------GGGGCTTCCEEECCSSC
T ss_pred cCCCCCEEECcCCcC-CCC-----hhhccCCCCCEEEecCCcccccc----------------cccccCCCCEEECCCCC
Confidence 666777777665432 221 23677889999999888754321 13345677788887777
Q ss_pred CCCCCchhhhccCCcEEEEcCCCCCCCCCccccc-cccceeccccccceEeCccccCCC---CCCccCCC--CCCcccCC
Q 003773 635 GNIFPKWLTLLTNLRELKLFSCVNCEHLPPLGKL-LLEKLTLYNLISVKRVGDEFLGIE---ESSVDDTS--SSSSVIAF 708 (796)
Q Consensus 635 ~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~l~~l-~L~~L~l~~~~~l~~~~~~~~~~~---~~~~~~~~--~~~~~~~~ 708 (796)
...++ .+..+++|++|++++|. +..++.+..+ +|+.|++++|......+ +..+. .+.+.++. ....+..+
T Consensus 233 l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l 308 (466)
T 1o6v_A 233 LKDIG-TLASLTNLTDLDLANNQ-ISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNL 308 (466)
T ss_dssp CCCCG-GGGGCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGGGGGC
T ss_pred cccch-hhhcCCCCCEEECCCCc-cccchhhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchhhcCC
Confidence 66653 45677777777777774 3444446666 77777777664322111 11111 11111111 11224577
Q ss_pred CccceeeccccccccccccccccccccCCCCccceeeccCCCCCCCCCcCCCCCCCccEEEEcCCCc
Q 003773 709 PKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLPDHLLQTTTLQELSIRGCPI 775 (796)
Q Consensus 709 ~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~ 775 (796)
++|+.|++++| .++.. .+ +..+++|++|++++| .+..++ .+..+++|+.|++++|+.
T Consensus 309 ~~L~~L~L~~n-~l~~~-----~~--~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 309 KNLTYLTLYFN-NISDI-----SP--VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQI 365 (466)
T ss_dssp TTCSEEECCSS-CCSCC-----GG--GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred CCCCEEECcCC-cCCCc-----hh--hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCcc
Confidence 88888877776 34332 23 568899999999999 555664 577899999999999975
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=3.1e-21 Score=227.89 Aligned_cols=346 Identities=14% Similarity=0.109 Sum_probs=214.0
Q ss_pred EEEeecCCCCCCCCCCCCCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCcccccccc-cccccCc
Q 003773 378 LGLNFEGGASFPMSTPEFNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREI-PENIGKL 456 (796)
Q Consensus 378 l~l~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-p~~~~~l 456 (796)
+.....+....|. -.++++.|.+.+. .+..+.+..|.++++|++|+|++ +..+..+ |..++++
T Consensus 9 ~dcs~~~L~~vP~---lp~~l~~LdLs~N------~i~~i~~~~~~~l~~L~~LdLs~-------n~~~~~i~~~~f~~L 72 (844)
T 3j0a_A 9 AFYRFCNLTQVPQ---VLNTTERLLLSFN------YIRTVTASSFPFLEQLQLLELGS-------QYTPLTIDKEAFRNL 72 (844)
T ss_dssp EEESCCCSSCCCS---SCTTCCEEEEESC------CCCEECSSSCSSCCSCSEEEECT-------TCCCCEECTTTTSSC
T ss_pred EEccCCCCCCCCC---CCCCcCEEECCCC------cCCccChhHCcccccCeEEeCCC-------CCCccccCHHHhcCC
Confidence 3334444443443 3356666655442 33445556689999999999995 4356666 7889999
Q ss_pred cccceEecCCCCcccc-chhhhccCCccEeeccccccccccchh--hccccCCCeeecCCccccccCc-ccCCCCCCccc
Q 003773 457 IHLKYLNLSELCIERL-PETLCELYNLQKLAVRWCTNLRELPAG--IGKLMNMRSLMNGQTEKLKYLP-IGISRLTSLRT 532 (796)
Q Consensus 457 ~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~--~~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~ 532 (796)
++|++|+|++|.+..+ |..++++++|++|+|++|.....+|.. ++.+++|++|++++|......| ..++++++|++
T Consensus 73 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~ 152 (844)
T 3j0a_A 73 PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152 (844)
T ss_dssp TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE
T ss_pred CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE
Confidence 9999999999999876 778999999999999999855556665 8999999999999995544333 56899999999
Q ss_pred CCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhccccccc------cccceEEEeccccCCCCCcCc
Q 003773 533 LEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKK------NLLRLHLEFGRVVDGEGEEGR 606 (796)
Q Consensus 533 L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~~~~~~~~ 606 (796)
|+ ..++......+..+..+.. .+|+.+.+....- .......+..+. +|+.|+++.|.+.+.......
T Consensus 153 L~--Ls~N~i~~~~~~~l~~l~~-~~L~~L~L~~n~l----~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 225 (844)
T 3j0a_A 153 ID--FSSNQIFLVCEHELEPLQG-KTLSFFSLAANSL----YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS 225 (844)
T ss_dssp EE--EESSCCCCCCSGGGHHHHH-CSSCCCEECCSBS----CCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGG
T ss_pred EE--CCCCcCCeeCHHHcccccC-CccceEECCCCcc----ccccccchhhcCCccccCceeEEecCCCcCchhHHHHHH
Confidence 97 5555554444455554422 4455555544221 111111223333 378888877754321111000
Q ss_pred cC----------------------chhHHHHHhhCCC--CCCCcEEEEeecCCCCC-CchhhhccCCcEEEEcCCCCCCC
Q 003773 607 RK----------------------NEKDKQLLEALQP--PLNVEELWILFYGGNIF-PKWLTLLTNLRELKLFSCVNCEH 661 (796)
Q Consensus 607 ~~----------------------~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~ 661 (796)
.. ..........+.. +++|+.|+++++....+ |..+..+++|+.|+|++|.....
T Consensus 226 ~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~ 305 (844)
T 3j0a_A 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI 305 (844)
T ss_dssp GTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE
T ss_pred hhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC
Confidence 00 0000000111111 36788888888776554 55666788888888888865444
Q ss_pred CCc-cccc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeeccccccccccccccccccccCCCC
Q 003773 662 LPP-LGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMP 739 (796)
Q Consensus 662 lp~-l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~ 739 (796)
.|. +..+ +|+.|++++|......+.. +..+++|+.|+++++ .+ ....+..+..++
T Consensus 306 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----------------~~~l~~L~~L~L~~N-~i-----~~~~~~~~~~l~ 362 (844)
T 3j0a_A 306 ADEAFYGLDNLQVLNLSYNLLGELYSSN-----------------FYGLPKVAYIDLQKN-HI-----AIIQDQTFKFLE 362 (844)
T ss_dssp CTTTTTTCSSCCEEEEESCCCSCCCSCS-----------------CSSCTTCCEEECCSC-CC-----CCCCSSCSCSCC
T ss_pred ChHHhcCCCCCCEEECCCCCCCccCHHH-----------------hcCCCCCCEEECCCC-CC-----CccChhhhcCCC
Confidence 443 6677 8888888876532222222 336677777766654 22 223344566677
Q ss_pred ccceeeccCCCCCCCCCcCCCCCCCccEEEEcCCC
Q 003773 740 RLSSLEIDCCSKLNVLPDHLLQTTTLQELSIRGCP 774 (796)
Q Consensus 740 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 774 (796)
+|++|++++| .++.++. +++|+.|++++|+
T Consensus 363 ~L~~L~Ls~N-~l~~i~~----~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 363 KLQTLDLRDN-ALTTIHF----IPSIPDIFLSGNK 392 (844)
T ss_dssp CCCEEEEETC-CSCCCSS----CCSCSEEEEESCC
T ss_pred CCCEEECCCC-CCCcccC----CCCcchhccCCCC
Confidence 7777777777 3444432 5666666666665
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=7e-22 Score=224.20 Aligned_cols=284 Identities=18% Similarity=0.180 Sum_probs=218.7
Q ss_pred CcccceeeecccccCCCccccccccccc-ccCccccceEecCCCCccccch-hhhccCCccEeeccccccccccchhhcc
Q 003773 425 VACLRALVIRQWFVPLDDQNFIREIPEN-IGKLIHLKYLNLSELCIERLPE-TLCELYNLQKLAVRWCTNLRELPAGIGK 502 (796)
Q Consensus 425 ~~~L~~L~l~~~~~~~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~ 502 (796)
+.+++.|+++ ++.+..+|.. ++.+++|++|++++|.++.+|. .++++++|++|+|++|......|..|+.
T Consensus 50 l~~l~~l~l~--------~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 121 (597)
T 3oja_B 50 LNNQKIVTFK--------NSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121 (597)
T ss_dssp GCCCSEEEES--------SCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCceEEEee--------CCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence 6789999999 7778888765 6789999999999999998775 8999999999999998844444556799
Q ss_pred ccCCCeeecCCccccccCccc-CCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhccc
Q 003773 503 LMNMRSLMNGQTEKLKYLPIG-ISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQL 581 (796)
Q Consensus 503 l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l 581 (796)
+++|++|++++| .+..+|.. ++.+++|++|+ ..++......+..+ ..+++|+.+.+.+.. +.. ..+
T Consensus 122 l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~--Ls~N~l~~~~~~~~---~~l~~L~~L~L~~N~----l~~---~~~ 188 (597)
T 3oja_B 122 VPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLS--MSNNNLERIEDDTF---QATTSLQNLQLSSNR----LTH---VDL 188 (597)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE--CCSSCCCBCCTTTT---TTCTTCCEEECTTSC----CSB---CCG
T ss_pred CCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEE--eeCCcCCCCChhhh---hcCCcCcEEECcCCC----CCC---cCh
Confidence 999999999999 56677776 58999999997 34444433333334 445555555555421 111 235
Q ss_pred cccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCCC
Q 003773 582 YNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCEH 661 (796)
Q Consensus 582 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~ 661 (796)
..+++|+.|++++|.+. .+..+++|+.|+++++.+..+|..+ .++|+.|+|++|. +..
T Consensus 189 ~~l~~L~~L~l~~n~l~-------------------~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~-l~~ 246 (597)
T 3oja_B 189 SLIPSLFHANVSYNLLS-------------------TLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNN-LTD 246 (597)
T ss_dssp GGCTTCSEEECCSSCCS-------------------EEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSC-CCC
T ss_pred hhhhhhhhhhcccCccc-------------------cccCCchhheeeccCCccccccccc--CCCCCEEECCCCC-CCC
Confidence 67789999999988742 3456678999999999987776554 4799999999995 445
Q ss_pred CCccccc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeeccccccccccccccccccccCCCCc
Q 003773 662 LPPLGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPR 740 (796)
Q Consensus 662 lp~l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~ 740 (796)
.+.++.+ +|+.|++++|......+.. ++.+++|+.|+++++ .++.+ |..+..+|+
T Consensus 247 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~-----------------~~~l~~L~~L~Ls~N-~l~~l------~~~~~~l~~ 302 (597)
T 3oja_B 247 TAWLLNYPGLVEVDLSYNELEKIMYHP-----------------FVKMQRLERLYISNN-RLVAL------NLYGQPIPT 302 (597)
T ss_dssp CGGGGGCTTCSEEECCSSCCCEEESGG-----------------GTTCSSCCEEECTTS-CCCEE------ECSSSCCTT
T ss_pred ChhhccCCCCCEEECCCCccCCCCHHH-----------------hcCccCCCEEECCCC-CCCCC------CcccccCCC
Confidence 6778888 9999999998755444433 347899999988886 45443 556678999
Q ss_pred cceeeccCCCCCCCCCcCCCCCCCccEEEEcCCCch
Q 003773 741 LSSLEIDCCSKLNVLPDHLLQTTTLQELSIRGCPIL 776 (796)
Q Consensus 741 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l 776 (796)
|++|+|++| .+..+|..+..+++|+.|++++|+..
T Consensus 303 L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 303 LKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp CCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCCC
T ss_pred CcEEECCCC-CCCccCcccccCCCCCEEECCCCCCC
Confidence 999999999 56689888888999999999999853
No 36
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=1.2e-21 Score=221.23 Aligned_cols=181 Identities=19% Similarity=0.170 Sum_probs=124.1
Q ss_pred CCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCcccccccc-cccccCccccceEecCCCCccccch
Q 003773 396 NRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREI-PENIGKLIHLKYLNLSELCIERLPE 474 (796)
Q Consensus 396 ~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~ 474 (796)
++++.| +++ .+.....++..|.++++|++|+++ ++.+..+ |..++.+++|++|++++|.++.+|.
T Consensus 26 ~~L~~L---~Ls---~n~l~~~~~~~~~~l~~L~~L~Ls--------~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 91 (549)
T 2z81_A 26 AAMKSL---DLS---FNKITYIGHGDLRACANLQVLILK--------SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS 91 (549)
T ss_dssp TTCCEE---ECC---SSCCCEECSSTTSSCTTCCEEECT--------TSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred CCccEE---ECc---CCccCccChhhhhcCCcccEEECC--------CCCcCccChhhccccccCCEEECCCCccCccCH
Confidence 455555 444 222344445568999999999999 5556655 5789999999999999999998877
Q ss_pred h-hhccCCccEeecccccccc-ccchhhccccCCCeeecCCccccccCc-ccCCCCCCcccCCCeeeCCccCCCCccccc
Q 003773 475 T-LCELYNLQKLAVRWCTNLR-ELPAGIGKLMNMRSLMNGQTEKLKYLP-IGISRLTSLRTLEKFVVGGGVDGGSTCRLE 551 (796)
Q Consensus 475 ~-i~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~ 551 (796)
. ++++++|++|++++|.... ..|..++.+++|++|++++|..+..+| ..++++++|+.|+ ...+......+..+.
T Consensus 92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~--L~~n~l~~~~~~~l~ 169 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE--IKALSLRNYQSQSLK 169 (549)
T ss_dssp HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE--EEETTCCEECTTTTT
T ss_pred HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeee--ccCCcccccChhhhh
Confidence 5 9999999999999987433 457789999999999999997677776 4789999999998 444444332333333
Q ss_pred ccccCCCCCcceecCCCCCCChhhhhhccccccccccceEEEeccccC
Q 003773 552 SLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLHLEFGRVVD 599 (796)
Q Consensus 552 ~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 599 (796)
.+++|+.+.+..... .. .....+..+++|+.|+++.|.+.+
T Consensus 170 ---~l~~L~~L~l~~n~~-~~---~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 170 ---SIRDIHHLTLHLSES-AF---LLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp ---TCSEEEEEEEECSBS-TT---HHHHHHHSTTTBSEEEEESCBCTT
T ss_pred ---ccccCceEecccCcc-cc---cchhhHhhcccccEEEccCCcccc
Confidence 344444444443221 11 111122345666666666666543
No 37
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=4.9e-21 Score=214.37 Aligned_cols=366 Identities=14% Similarity=0.137 Sum_probs=221.4
Q ss_pred EEEEEeecCCCCCCCCCCCCCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCcccccccc-ccccc
Q 003773 376 RHLGLNFEGGASFPMSTPEFNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREI-PENIG 454 (796)
Q Consensus 376 ~~l~l~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-p~~~~ 454 (796)
+.+.+..+.....+...+ ++++.| +++ .+.+...++..|.++++|++|+++ ++.+..+ |..++
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L---~Ls---~n~i~~~~~~~~~~l~~L~~L~Ls--------~n~l~~~~~~~~~ 66 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTIL---NIS---QNYISELWTSDILSLSKLRILIIS--------HNRIQYLDISVFK 66 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEE---ECC---SSCCCCCCHHHHTTCTTCCEEECC--------SSCCCEEEGGGGT
T ss_pred ceEecCCCCccccccccc--ccccEE---ECC---CCcccccChhhccccccccEEecC--------CCccCCcChHHhh
Confidence 456777777665554333 555555 444 233445566779999999999999 6666666 78899
Q ss_pred CccccceEecCCCCccccchhhhccCCccEeecccccccc-ccchhhccccCCCeeecCCccccccCcccCCCCCCc--c
Q 003773 455 KLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLR-ELPAGIGKLMNMRSLMNGQTEKLKYLPIGISRLTSL--R 531 (796)
Q Consensus 455 ~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L--~ 531 (796)
++++|++|++++|.++.+|.. .+++|++|++++|.... .+|..++.+++|++|++++|.. .. ..++.+++| +
T Consensus 67 ~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l-~~--~~~~~l~~L~L~ 141 (520)
T 2z7x_B 67 FNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL-EK--SSVLPIAHLNIS 141 (520)
T ss_dssp TCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC-CG--GGGGGGTTSCEE
T ss_pred cccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCccc-ch--hhccccccceee
Confidence 999999999999999999987 89999999999988544 4788999999999999999853 33 356677777 8
Q ss_pred cCCCeeeCCcc--CCCCcccccccc-----------------------cCCCCCcceecCCCCCCC---hhhhhhccccc
Q 003773 532 TLEKFVVGGGV--DGGSTCRLESLK-----------------------NLQLLRECRVEGLSNVSH---VDEAERLQLYN 583 (796)
Q Consensus 532 ~L~~~~~~~~~--~~~~~~~l~~l~-----------------------~L~~L~~l~l~~l~~~~~---~~~~~~~~l~~ 583 (796)
.|++ ..+.. ....+..+..+. +++.|+.+.+.+...... ..... ..+..
T Consensus 142 ~L~l--~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~ 218 (520)
T 2z7x_B 142 KVLL--VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL-AKLQT 218 (520)
T ss_dssp EEEE--EECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH-HGGGG
T ss_pred EEEe--ecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecch-hhhcc
Confidence 8874 33332 222333333322 233333333332110000 00000 01222
Q ss_pred c---------------------------ccccceEEEeccccCCCCCcC-----cc-Cc-----------hhHHHHHhhC
Q 003773 584 K---------------------------KNLLRLHLEFGRVVDGEGEEG-----RR-KN-----------EKDKQLLEAL 619 (796)
Q Consensus 584 ~---------------------------~~L~~L~l~~~~~~~~~~~~~-----~~-~~-----------~~~~~~~~~l 619 (796)
+ ++|+.|+++.|.+.+...... .. .. .........+
T Consensus 219 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~ 298 (520)
T 2z7x_B 219 NPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI 298 (520)
T ss_dssp CTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHH
T ss_pred ccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcc
Confidence 2 255555555555432111100 00 00 0000000000
Q ss_pred CCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCCCCCc-cccc-cccceeccccccce--EeCccccCC---C
Q 003773 620 QPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCEHLPP-LGKL-LLEKLTLYNLISVK--RVGDEFLGI---E 692 (796)
Q Consensus 620 ~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~-l~~l-~L~~L~l~~~~~l~--~~~~~~~~~---~ 692 (796)
....+|+.|+++++.....+. ...+++|++|++++|...+.+|. ++.+ +|+.|++++|.... .++..+..+ .
T Consensus 299 ~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~ 377 (520)
T 2z7x_B 299 FSNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQ 377 (520)
T ss_dssp HHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCC
T ss_pred cccCceeEEEcCCCccccccc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCC
Confidence 011346666666655443321 15789999999999976665665 7888 99999999886432 222222222 2
Q ss_pred CCCccCCCCCC-----cccCCCccceeeccccccccccccccccccccCCCCccceeeccCCCCCCCCCcCCCCCCCccE
Q 003773 693 ESSVDDTSSSS-----SVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLPDHLLQTTTLQE 767 (796)
Q Consensus 693 ~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 767 (796)
.+++.++.... .+..+++|+.|+++++ .++ +..+..+. ++|++|++++| .++.+|..+..+++|++
T Consensus 378 ~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N-~l~-----~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~ 448 (520)
T 2z7x_B 378 QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN-ILT-----DTIFRCLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQE 448 (520)
T ss_dssp EEECCSSCCBCCGGGCSCCCCTTCCEEECCSS-CCC-----GGGGGSCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCE
T ss_pred EEECCCCcCCcccccchhccCccCCEEECcCC-CCC-----cchhhhhc--ccCCEEECCCC-cccccchhhhcCCCCCE
Confidence 22333222221 2345678888877765 232 22233332 79999999999 56689988889999999
Q ss_pred EEEcCCCc
Q 003773 768 LSIRGCPI 775 (796)
Q Consensus 768 L~l~~~~~ 775 (796)
|++++|+.
T Consensus 449 L~L~~N~l 456 (520)
T 2z7x_B 449 LNVASNQL 456 (520)
T ss_dssp EECCSSCC
T ss_pred EECCCCcC
Confidence 99999963
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=8.1e-21 Score=206.98 Aligned_cols=96 Identities=23% Similarity=0.264 Sum_probs=48.5
Q ss_pred hhcCcccceeeecccccCCCcccccccccccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhc
Q 003773 422 FSKVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIG 501 (796)
Q Consensus 422 ~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~ 501 (796)
+..+++|++|+++ ++.+..+| ++.+++|++|++++|.++.+| ++++++|++|++++|. +..++ ++
T Consensus 81 ~~~l~~L~~L~Ls--------~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~ 145 (457)
T 3bz5_A 81 LSQNTNLTYLACD--------SNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID--VS 145 (457)
T ss_dssp CTTCTTCSEEECC--------SSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC--CT
T ss_pred cccCCCCCEEECc--------CCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc-cceec--cc
Confidence 4455555555555 33333333 455555555555555555543 5555555555555544 33332 45
Q ss_pred cccCCCeeecCCccccccCcccCCCCCCcccCC
Q 003773 502 KLMNMRSLMNGQTEKLKYLPIGISRLTSLRTLE 534 (796)
Q Consensus 502 ~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 534 (796)
.+++|++|++++|..+..+ .++.+++|+.|+
T Consensus 146 ~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 176 (457)
T 3bz5_A 146 HNTQLTELDCHLNKKITKL--DVTPQTQLTTLD 176 (457)
T ss_dssp TCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE
T ss_pred cCCcCCEEECCCCCccccc--ccccCCcCCEEE
Confidence 5555555555555444443 244455555554
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=1.4e-20 Score=218.12 Aligned_cols=360 Identities=16% Similarity=0.118 Sum_probs=221.0
Q ss_pred EEEeecCCCCCCCCCCCCCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCcccccccc-cccccCc
Q 003773 378 LGLNFEGGASFPMSTPEFNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREI-PENIGKL 456 (796)
Q Consensus 378 l~l~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-p~~~~~l 456 (796)
+..........+...+ .+++.| +++ .+....+++..|.++++|++|+++ ++.+..+ |..++++
T Consensus 9 ~~cs~~~L~~ip~~~~--~~l~~L---~Ls---~n~l~~~~~~~~~~l~~L~~L~Ls--------~n~l~~~~~~~~~~l 72 (680)
T 1ziw_A 9 ADCSHLKLTQVPDDLP--TNITVL---NLT---HNQLRRLPAANFTRYSQLTSLDVG--------FNTISKLEPELCQKL 72 (680)
T ss_dssp EECCSSCCSSCCSCSC--TTCSEE---ECC---SSCCCCCCGGGGGGGTTCSEEECC--------SSCCCCCCTTHHHHC
T ss_pred eECCCCCccccccccC--CCCcEE---ECC---CCCCCCcCHHHHhCCCcCcEEECC--------CCccCccCHHHHhcc
Confidence 4444444444443332 455555 444 223344566678999999999999 5555555 7778999
Q ss_pred cccceEecCCCCccccch-hhhccCCccEeeccccccccccc-hhhccccCCCeeecCCccccccCcccCCCCCCcccCC
Q 003773 457 IHLKYLNLSELCIERLPE-TLCELYNLQKLAVRWCTNLRELP-AGIGKLMNMRSLMNGQTEKLKYLPIGISRLTSLRTLE 534 (796)
Q Consensus 457 ~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 534 (796)
++|++|++++|.++.+|. .++++++|++|++++|. +..+| ..|+.+++|++|++++|......|..++++++|++|+
T Consensus 73 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 151 (680)
T 1ziw_A 73 PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL 151 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEE
T ss_pred cCcCEEECCCCccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEE
Confidence 999999999999999987 59999999999999987 45554 6799999999999999966666677789999999997
Q ss_pred CeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhcccccc---------------------------ccc
Q 003773 535 KFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNK---------------------------KNL 587 (796)
Q Consensus 535 ~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~---------------------------~~L 587 (796)
+ ..+......+..+. ...++.|+.+.+.+.. +.......+..+ ++|
T Consensus 152 L--~~n~l~~~~~~~~~-~~~~~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L 224 (680)
T 1ziw_A 152 L--SNNKIQALKSEELD-IFANSSLKKLELSSNQ----IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI 224 (680)
T ss_dssp C--CSSCCCCBCHHHHG-GGTTCEESEEECTTCC----CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCC
T ss_pred c--cCCcccccCHHHhh-ccccccccEEECCCCc----ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccc
Confidence 3 33333222222221 1123444444444321 111111223333 344
Q ss_pred cceEEEeccccCCCCCcCccCchhHHHHHhhCCCC--CCCcEEEEeecCCCCC-CchhhhccCCcEEEEcCCCCCCCCCc
Q 003773 588 LRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPP--LNVEELWILFYGGNIF-PKWLTLLTNLRELKLFSCVNCEHLPP 664 (796)
Q Consensus 588 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~lp~ 664 (796)
+.|+++++.+.+.. +..+..+ ++|+.|++++|....+ |.++..+++|++|++++|...+..|.
T Consensus 225 ~~L~L~~n~l~~~~--------------~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 290 (680)
T 1ziw_A 225 RNLSLSNSQLSTTS--------------NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290 (680)
T ss_dssp CEEECTTSCCCEEC--------------TTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT
T ss_pred cEEEccCCcccccC--------------hhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChh
Confidence 55555544432111 0111122 3477888877776554 45566778888888887755544443
Q ss_pred -cccc-cccceeccccccc--------eEeCc-cccCCC---CCCccCCCC----CCcccCCCccceeeccccc------
Q 003773 665 -LGKL-LLEKLTLYNLISV--------KRVGD-EFLGIE---ESSVDDTSS----SSSVIAFPKLKSLKIEDLD------ 720 (796)
Q Consensus 665 -l~~l-~L~~L~l~~~~~l--------~~~~~-~~~~~~---~~~~~~~~~----~~~~~~~~~L~~L~l~~~~------ 720 (796)
++.+ +|+.|++.++... ..+.. .+.... .+.+.++.. ...+..+++|++|+++++.
T Consensus 291 ~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l 370 (680)
T 1ziw_A 291 SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL 370 (680)
T ss_dssp TTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEE
T ss_pred hhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhc
Confidence 6666 7777777654311 11111 111111 111221111 1234567888888887652
Q ss_pred -----------cc-----cccccccccccccCCCCccceeeccCCCCCCCCC-cCCCCCCCccEEEEcCCCc
Q 003773 721 -----------EL-----EEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLP-DHLLQTTTLQELSIRGCPI 775 (796)
Q Consensus 721 -----------~L-----~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~ 775 (796)
.| ..+.+.+..+..+..+++|++|++++|.....+| ..+..+++|++|++++|..
T Consensus 371 ~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l 442 (680)
T 1ziw_A 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442 (680)
T ss_dssp CTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSE
T ss_pred chhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCc
Confidence 12 2333444456677788889999999886555565 4677888899999988874
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=7e-21 Score=207.46 Aligned_cols=309 Identities=18% Similarity=0.119 Sum_probs=210.4
Q ss_pred CCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCcccccccccccccCccccceEecCCCCccccch
Q 003773 395 FNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPE 474 (796)
Q Consensus 395 ~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~ 474 (796)
+.+++.|+.++++. +.....+ .+..+++|++|+++ ++.+..+| ++.+++|++|++++|.++.+|
T Consensus 38 ~~~l~~L~~L~Ls~---n~l~~~~--~l~~l~~L~~L~Ls--------~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~- 101 (457)
T 3bz5_A 38 EEQLATLTSLDCHN---SSITDMT--GIEKLTGLTKLICT--------SNNITTLD--LSQNTNLTYLACDSNKLTNLD- 101 (457)
T ss_dssp HHHHTTCCEEECCS---SCCCCCT--TGGGCTTCSEEECC--------SSCCSCCC--CTTCTTCSEEECCSSCCSCCC-
T ss_pred hhHcCCCCEEEccC---CCcccCh--hhcccCCCCEEEcc--------CCcCCeEc--cccCCCCCEEECcCCCCceee-
Confidence 34444555555552 1222333 37889999999999 56666665 889999999999999999886
Q ss_pred hhhccCCccEeeccccccccccchhhccccCCCeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCcccccccc
Q 003773 475 TLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLK 554 (796)
Q Consensus 475 ~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~ 554 (796)
++++++|++|++++|. +..+| ++.+++|++|++++| .++.+| ++.+++|+.|++ ..+...+.. .+.
T Consensus 102 -~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l--~~n~~~~~~-----~~~ 167 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDC--HLNKKITKL-----DVT 167 (457)
T ss_dssp -CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEEC--TTCSCCCCC-----CCT
T ss_pred -cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCC-ccceec--cccCCcCCEEEC--CCCCccccc-----ccc
Confidence 8899999999999986 56665 889999999999999 455554 788889998873 233221111 244
Q ss_pred cCCCCCcceecCCCCCCChhhhhhccccccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecC
Q 003773 555 NLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYG 634 (796)
Q Consensus 555 ~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 634 (796)
.++.|+.+.+.+.. +..+ .+..+++|+.|+++.|.+.+. .+..+++|+.|++++|.
T Consensus 168 ~l~~L~~L~ls~n~----l~~l---~l~~l~~L~~L~l~~N~l~~~-----------------~l~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 168 PQTQLTTLDCSFNK----ITEL---DVSQNKLLNRLNCDTNNITKL-----------------DLNQNIQLTFLDCSSNK 223 (457)
T ss_dssp TCTTCCEEECCSSC----CCCC---CCTTCTTCCEEECCSSCCSCC-----------------CCTTCTTCSEEECCSSC
T ss_pred cCCcCCEEECCCCc----ccee---ccccCCCCCEEECcCCcCCee-----------------ccccCCCCCEEECcCCc
Confidence 55566666655432 1221 267888999999998886431 25667899999999999
Q ss_pred CCCCCchhhhccCCcEEEEcCCCCCCCCCccccc-cccceeccccccceEeCccccCCCCCCccCCC--CCCcccCCCcc
Q 003773 635 GNIFPKWLTLLTNLRELKLFSCVNCEHLPPLGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTS--SSSSVIAFPKL 711 (796)
Q Consensus 635 ~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L 711 (796)
...+| +..+++|+.|++++|.. ..+| .+.+ +|+.|+++++. ++.+.. ..+. .....+.+++|
T Consensus 224 l~~ip--~~~l~~L~~L~l~~N~l-~~~~-~~~l~~L~~L~l~~n~-L~~L~l----------~~n~~~~~~~~~~l~~L 288 (457)
T 3bz5_A 224 LTEID--VTPLTQLTYFDCSVNPL-TELD-VSTLSKLTTLHCIQTD-LLEIDL----------THNTQLIYFQAEGCRKI 288 (457)
T ss_dssp CSCCC--CTTCTTCSEEECCSSCC-SCCC-CTTCTTCCEEECTTCC-CSCCCC----------TTCTTCCEEECTTCTTC
T ss_pred ccccC--ccccCCCCEEEeeCCcC-CCcC-HHHCCCCCEEeccCCC-CCEEEC----------CCCccCCcccccccccC
Confidence 98887 77899999999999954 3343 3334 55555544321 111110 0000 00012478999
Q ss_pred ceeecccccccccccccc--ccccccCCCCccceeeccCCCCCCCCCcCCCCCCCccEEEEcCCCc
Q 003773 712 KSLKIEDLDELEEWNYRV--TRKENISIMPRLSSLEIDCCSKLNVLPDHLLQTTTLQELSIRGCPI 775 (796)
Q Consensus 712 ~~L~l~~~~~L~~~~~~~--~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~ 775 (796)
+.|++++|..+....... ...-.+..+++|++|++++| .++.++ +..+++|+.|++++|..
T Consensus 289 ~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 289 KELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp CCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSCC
T ss_pred CEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCCCC
Confidence 999999987655443211 00113567789999999998 566664 78899999999999874
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=3.3e-20 Score=205.19 Aligned_cols=270 Identities=19% Similarity=0.166 Sum_probs=190.8
Q ss_pred cccceeeecccccCCCcccccccc-cccccCccccceEecCCCCcccc-chhhhccCCccEeeccccccccccch-hhcc
Q 003773 426 ACLRALVIRQWFVPLDDQNFIREI-PENIGKLIHLKYLNLSELCIERL-PETLCELYNLQKLAVRWCTNLRELPA-GIGK 502 (796)
Q Consensus 426 ~~L~~L~l~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~ 502 (796)
+.+++|+|+ ++.+..+ |..+.++++|++|+|++|.++.+ |..+.++++|++|+|++|. +..+|. .|..
T Consensus 32 ~~l~~L~L~--------~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 102 (477)
T 2id5_A 32 TETRLLDLG--------KNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTG 102 (477)
T ss_dssp TTCSEEECC--------SSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTT
T ss_pred CCCcEEECC--------CCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccC
Confidence 467777777 5555555 45677777888888887777765 5567777888888887765 555554 3677
Q ss_pred ccCCCeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhcccc
Q 003773 503 LMNMRSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLY 582 (796)
Q Consensus 503 l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~ 582 (796)
+++|++|++++|......|..+..+++|+.|++ ..+.. .......+.
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l--~~n~l-------------------------------~~~~~~~~~ 149 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEV--GDNDL-------------------------------VYISHRAFS 149 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE--CCTTC-------------------------------CEECTTSST
T ss_pred CCCCCEEECCCCccccCChhHccccccCCEEEC--CCCcc-------------------------------ceeChhhcc
Confidence 777888888777554445556666777776652 22111 111122356
Q ss_pred ccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCc-hhhhccCCcEEEEcCCCCCCC
Q 003773 583 NKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPK-WLTLLTNLRELKLFSCVNCEH 661 (796)
Q Consensus 583 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~L~~~~~~~~ 661 (796)
++++|+.|+++.|.+.... ...+..+++|+.|++.++....++. .+..+++|++|++++|...+.
T Consensus 150 ~l~~L~~L~l~~n~l~~~~--------------~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~ 215 (477)
T 2id5_A 150 GLNSLEQLTLEKCNLTSIP--------------TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT 215 (477)
T ss_dssp TCTTCCEEEEESCCCSSCC--------------HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCE
T ss_pred CCCCCCEEECCCCcCcccC--------------hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccc
Confidence 6788899999988754311 2345677899999999998876644 566899999999999988887
Q ss_pred CCc-cccc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeeccccccccccccccccccccCCCC
Q 003773 662 LPP-LGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMP 739 (796)
Q Consensus 662 lp~-l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~ 739 (796)
+|. .... +|+.|++++|.. ..++... +..+++|+.|+++++ .+ .+..+..+..++
T Consensus 216 ~~~~~~~~~~L~~L~l~~n~l-~~~~~~~----------------~~~l~~L~~L~Ls~n-~l-----~~~~~~~~~~l~ 272 (477)
T 2id5_A 216 MTPNCLYGLNLTSLSITHCNL-TAVPYLA----------------VRHLVYLRFLNLSYN-PI-----STIEGSMLHELL 272 (477)
T ss_dssp ECTTTTTTCCCSEEEEESSCC-CSCCHHH----------------HTTCTTCCEEECCSS-CC-----CEECTTSCTTCT
T ss_pred cCcccccCccccEEECcCCcc-cccCHHH----------------hcCccccCeeECCCC-cC-----CccChhhccccc
Confidence 776 3344 899999998753 2232211 347899999988776 33 333456688999
Q ss_pred ccceeeccCCCCCCCCCcCCCCCCCccEEEEcCCC
Q 003773 740 RLSSLEIDCCSKLNVLPDHLLQTTTLQELSIRGCP 774 (796)
Q Consensus 740 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 774 (796)
+|++|+|++|......|..+..+++|+.|++++|.
T Consensus 273 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred cCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 99999999996655557788899999999999995
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=3.3e-21 Score=199.70 Aligned_cols=234 Identities=16% Similarity=0.147 Sum_probs=126.7
Q ss_pred cccccccCccccceEecCC-CCcc-ccchhhhccCCccEeeccccccccccchhhccccCCCeeecCCccccccCcccCC
Q 003773 448 EIPENIGKLIHLKYLNLSE-LCIE-RLPETLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTEKLKYLPIGIS 525 (796)
Q Consensus 448 ~lp~~~~~l~~L~~L~l~~-~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~ 525 (796)
.+|..++++++|++|++++ |.+. .+|..++++++|++|++++|.....+|..+..+++|++|++++|.....+|..++
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence 4555566666666666663 4444 5555566666666666665554345555566666666666666643335555555
Q ss_pred CCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhccccccc-cccceEEEeccccCCCCCc
Q 003773 526 RLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKK-NLLRLHLEFGRVVDGEGEE 604 (796)
Q Consensus 526 ~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~ 604 (796)
.+++|++|++ ..+...+..+. .+..++ +|+.|+++.|.+.+
T Consensus 147 ~l~~L~~L~L--~~N~l~~~~p~-------------------------------~l~~l~~~L~~L~L~~N~l~~----- 188 (313)
T 1ogq_A 147 SLPNLVGITF--DGNRISGAIPD-------------------------------SYGSFSKLFTSMTISRNRLTG----- 188 (313)
T ss_dssp GCTTCCEEEC--CSSCCEEECCG-------------------------------GGGCCCTTCCEEECCSSEEEE-----
T ss_pred cCCCCCeEEC--cCCcccCcCCH-------------------------------HHhhhhhcCcEEECcCCeeec-----
Confidence 5555555542 11111000000 111121 33333333333210
Q ss_pred CccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCCCCCc-cccc-cccceeccccccce
Q 003773 605 GRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCEHLPP-LGKL-LLEKLTLYNLISVK 682 (796)
Q Consensus 605 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~-l~~l-~L~~L~l~~~~~l~ 682 (796)
.+|..+..++ |++|++++|......|. +..+ +|+.|+++++....
T Consensus 189 --------------------------------~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 189 --------------------------------KIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp --------------------------------ECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred --------------------------------cCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence 2344444444 66666666644333333 4455 56666666554221
Q ss_pred EeCccccCCCCCCccCCCCCCcccCCCccceeeccccccccccccccccccccCCCCccceeeccCCCCCCCCCcCCCCC
Q 003773 683 RVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLPDHLLQT 762 (796)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l 762 (796)
.++. +..+++|++|+++++ .+.+..|..+..+++|++|++++|+....+|.. ..+
T Consensus 236 ~~~~------------------~~~l~~L~~L~Ls~N------~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l 290 (313)
T 1ogq_A 236 DLGK------------------VGLSKNLNGLDLRNN------RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL 290 (313)
T ss_dssp BGGG------------------CCCCTTCCEEECCSS------CCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred ecCc------------------ccccCCCCEEECcCC------cccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccc
Confidence 1111 235678888866654 344445777788888888888888666677765 678
Q ss_pred CCccEEEEcCCCchh
Q 003773 763 TTLQELSIRGCPILE 777 (796)
Q Consensus 763 ~~L~~L~l~~~~~l~ 777 (796)
++|+.+++++|+.+.
T Consensus 291 ~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 291 QRFDVSAYANNKCLC 305 (313)
T ss_dssp GGSCGGGTCSSSEEE
T ss_pred cccChHHhcCCCCcc
Confidence 888888888888654
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=1.5e-19 Score=189.32 Aligned_cols=96 Identities=20% Similarity=0.286 Sum_probs=61.0
Q ss_pred cccceeeecccccCCCcccccccccccccCccccceEecCCCCccccch-hhhccCCccEeeccccccccccchhhcccc
Q 003773 426 ACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPE-TLCELYNLQKLAVRWCTNLRELPAGIGKLM 504 (796)
Q Consensus 426 ~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 504 (796)
.+|++++++ ++.+..+|..+. ++|++|++++|.++.+|. .++++++|++|++++|......|..+..++
T Consensus 31 c~l~~l~~~--------~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (330)
T 1xku_A 31 CHLRVVQCS--------DLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 100 (330)
T ss_dssp EETTEEECT--------TSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred CCCeEEEec--------CCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC
Confidence 356677766 455556665443 567777777777776655 567777777777777663333466677777
Q ss_pred CCCeeecCCccccccCcccCCCCCCcccCC
Q 003773 505 NMRSLMNGQTEKLKYLPIGISRLTSLRTLE 534 (796)
Q Consensus 505 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 534 (796)
+|++|++++| .++.+|..+. ++|++|+
T Consensus 101 ~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 101 KLERLYLSKN-QLKELPEKMP--KTLQELR 127 (330)
T ss_dssp TCCEEECCSS-CCSBCCSSCC--TTCCEEE
T ss_pred CCCEEECCCC-cCCccChhhc--ccccEEE
Confidence 7777777776 4556665543 4566554
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=5.3e-20 Score=192.88 Aligned_cols=133 Identities=14% Similarity=-0.026 Sum_probs=61.7
Q ss_pred CCCcEEEEeecCCCCCC-chhhhccCCcEEEEcCCCCCCCCCc-cccc-cccceeccccccceEeCccccCCCCCCccCC
Q 003773 623 LNVEELWILFYGGNIFP-KWLTLLTNLRELKLFSCVNCEHLPP-LGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDT 699 (796)
Q Consensus 623 ~~L~~L~l~~~~~~~~p-~~~~~l~~L~~L~L~~~~~~~~lp~-l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 699 (796)
++|+.|+++++....++ ..+..+++|++|++++|......+. +..+ +|+.|++++|.. ..++..
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~lp~~------------ 259 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAG------------ 259 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC-CBCCTT------------
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC-eecChh------------
Confidence 35555555555554443 3455566666666666633332221 4455 566666655432 222211
Q ss_pred CCCCcccCCCccceeeccccccccccccccccccc-cCCCCccceeeccCCCCC--CCCCcCCCCCCCccEEEEcCCC
Q 003773 700 SSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKEN-ISIMPRLSSLEIDCCSKL--NVLPDHLLQTTTLQELSIRGCP 774 (796)
Q Consensus 700 ~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~-~~~l~~L~~L~l~~c~~l--~~lp~~~~~l~~L~~L~l~~~~ 774 (796)
+..+++|+.|+++++ .++........+.. ...+++|+.|++++|+.. ...|..+..+++|+.+++++|.
T Consensus 260 -----l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 260 -----LPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -----GGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred -----hhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 224556666655554 33332211000000 011456666777776543 3334455566667777766664
No 45
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=5.1e-20 Score=212.00 Aligned_cols=147 Identities=19% Similarity=0.208 Sum_probs=113.8
Q ss_pred CCCceEEEEEeecCCCCCCCCCCCCCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCccccccccc
Q 003773 371 FGEKVRHLGLNFEGGASFPMSTPEFNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREIP 450 (796)
Q Consensus 371 ~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp 450 (796)
.+..++.+.+..+.+...+ ...|.+++.|+.++++ .+.+..+++.+|.++++|++|+|+ ++.+..+|
T Consensus 50 lp~~~~~LdLs~N~i~~l~--~~~f~~l~~L~~L~Ls---~N~i~~i~~~~f~~L~~L~~L~Ls--------~N~l~~l~ 116 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLG--SYSFFSFPELQVLDLS---RCEIQTIEDGAYQSLSHLSTLILT--------GNPIQSLA 116 (635)
T ss_dssp SCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECT---TCCCCEECTTTTTTCTTCCEEECT--------TCCCCEEC
T ss_pred CCcCCCEEEeeCCCCCCCC--HHHHhCCCCCCEEECC---CCcCCCcChhHhcCCCCCCEEEcc--------CCcCCCCC
Confidence 4678999999998877433 2346677777777776 345566777789999999999999 67777776
Q ss_pred -ccccCccccceEecCCCCccccch-hhhccCCccEeecccccccc-ccchhhccccCCCeeecCCccccccCcccCCCC
Q 003773 451 -ENIGKLIHLKYLNLSELCIERLPE-TLCELYNLQKLAVRWCTNLR-ELPAGIGKLMNMRSLMNGQTEKLKYLPIGISRL 527 (796)
Q Consensus 451 -~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l 527 (796)
..|+++++|++|++++|.++.+|. .++++++|++|++++|.... .+|..++.+++|++|++++|......|..+..+
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L 196 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccch
Confidence 468999999999999999998886 58999999999999987432 467888999999999999985444344444444
Q ss_pred CCc
Q 003773 528 TSL 530 (796)
Q Consensus 528 ~~L 530 (796)
.++
T Consensus 197 ~~l 199 (635)
T 4g8a_A 197 HQM 199 (635)
T ss_dssp HTC
T ss_pred hhh
Confidence 333
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=1.8e-19 Score=187.68 Aligned_cols=201 Identities=23% Similarity=0.361 Sum_probs=142.7
Q ss_pred hhcCcccceeeecccccCCCcccccccccccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhc
Q 003773 422 FSKVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIG 501 (796)
Q Consensus 422 ~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~ 501 (796)
+.++++|++|+++ ++.+..+|..++++++|++|++++|.++.+|..++++++|++|++++|..+..+|..+.
T Consensus 100 l~~l~~L~~L~L~--------~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~ 171 (328)
T 4fcg_A 100 AFRLSHLQHMTID--------AAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLA 171 (328)
T ss_dssp GGGGTTCSEEEEE--------SSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSE
T ss_pred hhhCCCCCEEECC--------CCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHh
Confidence 4568899999999 66677899999999999999999999999999999999999999999998899998766
Q ss_pred c---------ccCCCeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCC
Q 003773 502 K---------LMNMRSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSH 572 (796)
Q Consensus 502 ~---------l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~ 572 (796)
. +++|++|++++| .++.+|..++++++|++|
T Consensus 172 ~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L--------------------------------------- 211 (328)
T 4fcg_A 172 STDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSL--------------------------------------- 211 (328)
T ss_dssp EEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEE---------------------------------------
T ss_pred hccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEE---------------------------------------
Confidence 5 666666666666 333444444333333333
Q ss_pred hhhhhhccccccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEE
Q 003773 573 VDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELK 652 (796)
Q Consensus 573 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~ 652 (796)
++++|.+..+|..+..+++|++|+
T Consensus 212 --------------------------------------------------------~L~~N~l~~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 212 --------------------------------------------------------KIRNSPLSALGPAIHHLPKLEELD 235 (328)
T ss_dssp --------------------------------------------------------EEESSCCCCCCGGGGGCTTCCEEE
T ss_pred --------------------------------------------------------EccCCCCCcCchhhccCCCCCEEE
Confidence 333333334455556666666666
Q ss_pred EcCCCCCCCCCc-cccc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeeccccccccccccccc
Q 003773 653 LFSCVNCEHLPP-LGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVT 730 (796)
Q Consensus 653 L~~~~~~~~lp~-l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~ 730 (796)
|++|...+.+|. ++.+ +|+.|++++|..+..++.. +..+++|+.|++++|..+. .
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~-----------------~~~l~~L~~L~L~~n~~~~------~ 292 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-----------------IHRLTQLEKLDLRGCVNLS------R 292 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT-----------------GGGCTTCCEEECTTCTTCC------C
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh-----------------hhcCCCCCEEeCCCCCchh------h
Confidence 666666666655 5556 6666776666655544433 2367788888777764433 3
Q ss_pred cccccCCCCccceeeccCC
Q 003773 731 RKENISIMPRLSSLEIDCC 749 (796)
Q Consensus 731 ~~~~~~~l~~L~~L~l~~c 749 (796)
.|..+..+++|+.+.+..+
T Consensus 293 iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 293 LPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCGGGGGSCTTCEEECCGG
T ss_pred ccHHHhhccCceEEeCCHH
Confidence 4777888888888888765
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=2.4e-20 Score=193.26 Aligned_cols=229 Identities=19% Similarity=0.241 Sum_probs=148.4
Q ss_pred hhcCcccceeeecccccCCCcccccccccccccCccccceEecCCCCcc-ccchhhhccCCccEeeccccccccccchhh
Q 003773 422 FSKVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIE-RLPETLCELYNLQKLAVRWCTNLRELPAGI 500 (796)
Q Consensus 422 ~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 500 (796)
+.++++|++|+++++ ++....+|..++++++|++|++++|.++ .+|..+.++++|++|++++|.....+|..+
T Consensus 72 l~~l~~L~~L~L~~~------n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 145 (313)
T 1ogq_A 72 LANLPYLNFLYIGGI------NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145 (313)
T ss_dssp GGGCTTCSEEEEEEE------TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred HhCCCCCCeeeCCCC------CcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH
Confidence 556666666666621 2333355666666666666666666665 566666666666666666666444566666
Q ss_pred ccccCCCeeecCCccccccCcccCCCCC-CcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhc
Q 003773 501 GKLMNMRSLMNGQTEKLKYLPIGISRLT-SLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERL 579 (796)
Q Consensus 501 ~~l~~L~~L~l~~~~~~~~~p~~i~~l~-~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~ 579 (796)
..+++|++|++++|.....+|..++.++ +|+.|+ ...+...+..+..+..+ . |+.+.+.+ +.+......
T Consensus 146 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~--L~~N~l~~~~~~~~~~l---~-L~~L~Ls~----N~l~~~~~~ 215 (313)
T 1ogq_A 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT--ISRNRLTGKIPPTFANL---N-LAFVDLSR----NMLEGDASV 215 (313)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE--CCSSEEEEECCGGGGGC---C-CSEEECCS----SEEEECCGG
T ss_pred hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEE--CcCCeeeccCChHHhCC---c-ccEEECcC----CcccCcCCH
Confidence 6666666666666644446666666665 666665 22232222222233322 2 44444433 122222334
Q ss_pred cccccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCC-CCCchhhhccCCcEEEEcCCCC
Q 003773 580 QLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGN-IFPKWLTLLTNLRELKLFSCVN 658 (796)
Q Consensus 580 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~L~~~~~ 658 (796)
.+..+++|+.|+++.|.+.. .+..+..+++|+.|++++|.+. .+|.++..+++|++|+|++|..
T Consensus 216 ~~~~l~~L~~L~L~~N~l~~---------------~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 216 LFGSDKNTQKIHLAKNSLAF---------------DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp GCCTTSCCSEEECCSSEECC---------------BGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred HHhcCCCCCEEECCCCceee---------------ecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 46778889999998887532 1223566789999999999987 7899999999999999999987
Q ss_pred CCCCCccccc-cccceeccccccc
Q 003773 659 CEHLPPLGKL-LLEKLTLYNLISV 681 (796)
Q Consensus 659 ~~~lp~l~~l-~L~~L~l~~~~~l 681 (796)
.+.+|..+.+ +|+.|++.++..+
T Consensus 281 ~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 281 CGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp EEECCCSTTGGGSCGGGTCSSSEE
T ss_pred cccCCCCccccccChHHhcCCCCc
Confidence 7788888888 8999999987644
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=4.3e-19 Score=185.84 Aligned_cols=271 Identities=16% Similarity=0.093 Sum_probs=144.5
Q ss_pred cccceeeecccccCCCcccccccccc-cccCccccceEecCCCCcccc-chhhhccCCccEeeccccccccccchhhccc
Q 003773 426 ACLRALVIRQWFVPLDDQNFIREIPE-NIGKLIHLKYLNLSELCIERL-PETLCELYNLQKLAVRWCTNLRELPAGIGKL 503 (796)
Q Consensus 426 ~~L~~L~l~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l 503 (796)
+.|++|+++ ++.+..++. .++++++|++|++++|.++.+ |..++++++|++|++++|. +..+|..+.
T Consensus 52 ~~l~~L~L~--------~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~-- 120 (330)
T 1xku_A 52 PDTALLDLQ--------NNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP-- 120 (330)
T ss_dssp TTCCEEECC--------SSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--
T ss_pred CCCeEEECC--------CCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc--
Confidence 467777777 555555543 577777777777777777765 5667777777777777765 556666544
Q ss_pred cCCCeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhccccc
Q 003773 504 MNMRSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYN 583 (796)
Q Consensus 504 ~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~ 583 (796)
++|++|++++|......+..++++++|++|++. .+.... ..... ..+..
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~--~n~l~~-~~~~~----------------------------~~~~~ 169 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELG--TNPLKS-SGIEN----------------------------GAFQG 169 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECC--SSCCCG-GGBCT----------------------------TGGGG
T ss_pred ccccEEECCCCcccccCHhHhcCCccccEEECC--CCcCCc-cCcCh----------------------------hhccC
Confidence 677777777774333333346667777766521 111100 00000 11333
Q ss_pred cccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCC-CchhhhccCCcEEEEcCCCCCCCC
Q 003773 584 KKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIF-PKWLTLLTNLRELKLFSCVNCEHL 662 (796)
Q Consensus 584 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~l 662 (796)
+++|+.|+++.|.+.... .. .+++|+.|++++|....+ |..+..+++|++|+|++|......
T Consensus 170 l~~L~~L~l~~n~l~~l~---------------~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 232 (330)
T 1xku_A 170 MKKLSYIRIADTNITTIP---------------QG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 232 (330)
T ss_dssp CTTCCEEECCSSCCCSCC---------------SS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC
T ss_pred CCCcCEEECCCCccccCC---------------cc--ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC
Confidence 444444444444432110 00 114566666666655443 455556666666666666433322
Q ss_pred C-ccccc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeeccccccccccccccccc-cccCCCC
Q 003773 663 P-PLGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRK-ENISIMP 739 (796)
Q Consensus 663 p-~l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~-~~~~~l~ 739 (796)
+ .+..+ +|+.|++++|.. ..++.. +..+++|++|+++++ .++........+ ......+
T Consensus 233 ~~~~~~l~~L~~L~L~~N~l-~~lp~~-----------------l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~ 293 (330)
T 1xku_A 233 NGSLANTPHLRELHLNNNKL-VKVPGG-----------------LADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKA 293 (330)
T ss_dssp TTTGGGSTTCCEEECCSSCC-SSCCTT-----------------TTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSC
T ss_pred hhhccCCCCCCEEECCCCcC-ccCChh-----------------hccCCCcCEEECCCC-cCCccChhhcCCcccccccc
Confidence 2 25555 666666666542 222211 235667777766655 333322110000 0011346
Q ss_pred ccceeeccCCCCCC--CCCcCCCCCCCccEEEEcCCC
Q 003773 740 RLSSLEIDCCSKLN--VLPDHLLQTTTLQELSIRGCP 774 (796)
Q Consensus 740 ~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~~~ 774 (796)
+|+.|++++|+... ..|..+..+.+|+.+++++|.
T Consensus 294 ~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 294 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccceEeecCcccccccCccccccccceeEEEecccC
Confidence 77888888886532 334556667788888887763
No 49
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.79 E-value=3.8e-18 Score=185.68 Aligned_cols=61 Identities=21% Similarity=0.300 Sum_probs=32.3
Q ss_pred CCCccceeeccccccccccccccccccccCCCCccceeeccCCCCCC--CCCcCCCCC-------------CCccEEEEc
Q 003773 707 AFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLN--VLPDHLLQT-------------TTLQELSIR 771 (796)
Q Consensus 707 ~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~--~lp~~~~~l-------------~~L~~L~l~ 771 (796)
.+++|+.|+++++ .++.+ |. .+++|++|++++|+... .+|..+..+ ++|+.|+++
T Consensus 335 ~~~~L~~L~L~~N-~l~~l------p~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls 404 (454)
T 1jl5_A 335 LPPRLERLIASFN-HLAEV------PE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVE 404 (454)
T ss_dssp CCTTCCEEECCSS-CCSCC------CC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------
T ss_pred cCCcCCEEECCCC-ccccc------cc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECC
Confidence 4678888888776 44432 33 47889999999986555 577777666 788999999
Q ss_pred CCCchh
Q 003773 772 GCPILE 777 (796)
Q Consensus 772 ~~~~l~ 777 (796)
+|+...
T Consensus 405 ~N~l~~ 410 (454)
T 1jl5_A 405 TNPLRE 410 (454)
T ss_dssp ------
T ss_pred CCcCCc
Confidence 887543
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=1.1e-18 Score=182.67 Aligned_cols=265 Identities=15% Similarity=0.107 Sum_probs=187.7
Q ss_pred cccceeeecccccCCCcccccccccccccCccccceEecCCCCccccch-hhhccCCccEeeccccccccccchhhcccc
Q 003773 426 ACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPE-TLCELYNLQKLAVRWCTNLRELPAGIGKLM 504 (796)
Q Consensus 426 ~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 504 (796)
.+|+.++++ ++.+..+|..+. ++|++|++++|.++.+|. .+.++++|++|++++|......|..+..++
T Consensus 33 c~l~~l~~~--------~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 102 (332)
T 2ft3_A 33 CHLRVVQCS--------DLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLR 102 (332)
T ss_dssp EETTEEECC--------SSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCT
T ss_pred ccCCEEECC--------CCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcC
Confidence 378999998 666778887663 689999999999988754 789999999999999874444577899999
Q ss_pred CCCeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhcccccc
Q 003773 505 NMRSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNK 584 (796)
Q Consensus 505 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~ 584 (796)
+|++|++++| .+..+|..+. ++|++|++ ..+... ......+..+
T Consensus 103 ~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l--~~n~i~-------------------------------~~~~~~~~~l 146 (332)
T 2ft3_A 103 KLQKLYISKN-HLVEIPPNLP--SSLVELRI--HDNRIR-------------------------------KVPKGVFSGL 146 (332)
T ss_dssp TCCEEECCSS-CCCSCCSSCC--TTCCEEEC--CSSCCC-------------------------------CCCSGGGSSC
T ss_pred CCCEEECCCC-cCCccCcccc--ccCCEEEC--CCCccC-------------------------------ccCHhHhCCC
Confidence 9999999998 5667777665 67777752 222211 0111124456
Q ss_pred ccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCCCCCc
Q 003773 585 KNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCEHLPP 664 (796)
Q Consensus 585 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~ 664 (796)
++|+.|+++.|.+... ...+..+..+ +|+.|+++++....+|..+. ++|++|++++|......+.
T Consensus 147 ~~L~~L~l~~n~l~~~------------~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~ 211 (332)
T 2ft3_A 147 RNMNCIEMGGNPLENS------------GFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELE 211 (332)
T ss_dssp SSCCEEECCSCCCBGG------------GSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTT
T ss_pred ccCCEEECCCCccccC------------CCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHH
Confidence 6677777766654210 0011223333 78888888888888887654 8999999999965444333
Q ss_pred -cccc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeeccccccccccccccccccccCCCCccc
Q 003773 665 -LGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLS 742 (796)
Q Consensus 665 -l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~ 742 (796)
+..+ +|+.|+++++......+.. +..+++|+.|+++++ .++.+ |..+..+++|+
T Consensus 212 ~l~~l~~L~~L~L~~N~l~~~~~~~-----------------~~~l~~L~~L~L~~N-~l~~l------p~~l~~l~~L~ 267 (332)
T 2ft3_A 212 DLLRYSKLYRLGLGHNQIRMIENGS-----------------LSFLPTLRELHLDNN-KLSRV------PAGLPDLKLLQ 267 (332)
T ss_dssp SSTTCTTCSCCBCCSSCCCCCCTTG-----------------GGGCTTCCEEECCSS-CCCBC------CTTGGGCTTCC
T ss_pred HhcCCCCCCEEECCCCcCCcCChhH-----------------hhCCCCCCEEECCCC-cCeec------ChhhhcCccCC
Confidence 7788 9999999987533221111 347899999988887 55532 66788999999
Q ss_pred eeeccCCCCCCCCCc-CCCC------CCCccEEEEcCCCch
Q 003773 743 SLEIDCCSKLNVLPD-HLLQ------TTTLQELSIRGCPIL 776 (796)
Q Consensus 743 ~L~l~~c~~l~~lp~-~~~~------l~~L~~L~l~~~~~l 776 (796)
+|++++| .++.+|. .+.. .++|+.|++++||..
T Consensus 268 ~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 268 VVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp EEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred EEECCCC-CCCccChhHccccccccccccccceEeecCccc
Confidence 9999999 4556653 2322 467999999999964
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.78 E-value=1.8e-18 Score=188.21 Aligned_cols=283 Identities=19% Similarity=0.143 Sum_probs=163.7
Q ss_pred cceeeecccccCCCcccccccccccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhccccCCC
Q 003773 428 LRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGKLMNMR 507 (796)
Q Consensus 428 L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 507 (796)
++.|+++ ++.+..+|.. .++|++|++++|.++.+|.. +.+|++|++++|. +..+|.. .++|+
T Consensus 73 l~~L~l~--------~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~---~~~L~ 134 (454)
T 1jl5_A 73 AHELELN--------NLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSDL---PPLLE 134 (454)
T ss_dssp CSEEECT--------TSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCSC---CTTCC
T ss_pred CCEEEec--------CCccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccCC---CCCCC
Confidence 3666666 4445555542 35677777777777777653 3677788887765 4444432 26788
Q ss_pred eeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhccccccccc
Q 003773 508 SLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNL 587 (796)
Q Consensus 508 ~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~~L 587 (796)
+|++++| .+..+| .++++++|++|++ ..+.... .+..+ ..|+.+.+.+.. +.... .+..+++|
T Consensus 135 ~L~L~~n-~l~~lp-~~~~l~~L~~L~l--~~N~l~~-lp~~~------~~L~~L~L~~n~----l~~l~--~~~~l~~L 197 (454)
T 1jl5_A 135 YLGVSNN-QLEKLP-ELQNSSFLKIIDV--DNNSLKK-LPDLP------PSLEFIAAGNNQ----LEELP--ELQNLPFL 197 (454)
T ss_dssp EEECCSS-CCSSCC-CCTTCTTCCEEEC--CSSCCSC-CCCCC------TTCCEEECCSSC----CSSCC--CCTTCTTC
T ss_pred EEECcCC-CCCCCc-ccCCCCCCCEEEC--CCCcCcc-cCCCc------ccccEEECcCCc----CCcCc--cccCCCCC
Confidence 8888888 455677 5888888888863 3333221 12111 244555554421 11211 36788889
Q ss_pred cceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCCCCCcccc
Q 003773 588 LRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCEHLPPLGK 667 (796)
Q Consensus 588 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~l~~ 667 (796)
+.|++++|.+.+.. ..+++|+.|++++|....+|. +..+++|++|++++|. +..+|..
T Consensus 198 ~~L~l~~N~l~~l~------------------~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~-l~~l~~~-- 255 (454)
T 1jl5_A 198 TAIYADNNSLKKLP------------------DLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNL-LKTLPDL-- 255 (454)
T ss_dssp CEEECCSSCCSSCC------------------CCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSC-CSSCCSC--
T ss_pred CEEECCCCcCCcCC------------------CCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCc-CCccccc--
Confidence 99999888754311 112589999999999888885 7789999999999985 4445542
Q ss_pred c-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeeccccc---------cccc-----cccccccc
Q 003773 668 L-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLD---------ELEE-----WNYRVTRK 732 (796)
Q Consensus 668 l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---------~L~~-----~~~~~~~~ 732 (796)
+ +|+.|++++|.. ..++.....+..+.+..+.........++|+.|+++++. +|+. +.+.+ .|
T Consensus 256 ~~~L~~L~l~~N~l-~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp 333 (454)
T 1jl5_A 256 PPSLEALNVRDNYL-TDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LP 333 (454)
T ss_dssp CTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CC
T ss_pred ccccCEEECCCCcc-cccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cc
Confidence 2 678888877653 223332222222222222111111112345555444331 1111 11111 12
Q ss_pred cccCCCCccceeeccCCCCCCCCCcCCCCCCCccEEEEcCCCch
Q 003773 733 ENISIMPRLSSLEIDCCSKLNVLPDHLLQTTTLQELSIRGCPIL 776 (796)
Q Consensus 733 ~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l 776 (796)
. .+++|++|++++| .++.+|. .+++|++|++++|+..
T Consensus 334 ~---~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~l~ 370 (454)
T 1jl5_A 334 A---LPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNPLR 370 (454)
T ss_dssp C---CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCS
T ss_pred c---cCCcCCEEECCCC-ccccccc---hhhhccEEECCCCCCC
Confidence 2 2577788888777 4556776 3677888888877643
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=4.3e-19 Score=187.64 Aligned_cols=257 Identities=17% Similarity=0.165 Sum_probs=134.2
Q ss_pred ccceeeecccccCCCcccccccccc-cccCccccceEecCCCCccccc-hhhhccCCccEeeccccccccccchh-hccc
Q 003773 427 CLRALVIRQWFVPLDDQNFIREIPE-NIGKLIHLKYLNLSELCIERLP-ETLCELYNLQKLAVRWCTNLRELPAG-IGKL 503 (796)
Q Consensus 427 ~L~~L~l~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~-~~~l 503 (796)
+|+.|+++ ++.+..+|. .+.++++|++|++++|.++.++ ..+.++++|++|++++|. +..+|.. ++.+
T Consensus 53 ~L~~L~l~--------~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l 123 (353)
T 2z80_A 53 AVKSLDLS--------NNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPL 123 (353)
T ss_dssp TCCEEECT--------TSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTC
T ss_pred cCcEEECC--------CCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCC
Confidence 56666666 444444433 4556666666666666655543 345566666666666554 3444443 5556
Q ss_pred cCCCeeecCCccccccCcc--cCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhccc
Q 003773 504 MNMRSLMNGQTEKLKYLPI--GISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQL 581 (796)
Q Consensus 504 ~~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l 581 (796)
++|++|++++| .+..+|. .++.+++|++|++ ..+.. ........+
T Consensus 124 ~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l--~~n~~------------------------------~~~~~~~~~ 170 (353)
T 2z80_A 124 SSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRV--GNMDT------------------------------FTKIQRKDF 170 (353)
T ss_dssp TTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEE--EESSS------------------------------CCEECTTTT
T ss_pred ccCCEEECCCC-CCcccCchhhhccCCCCcEEEC--CCCcc------------------------------ccccCHHHc
Confidence 66666666665 3344443 3444555555531 11100 000111123
Q ss_pred cccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCchhh-hccCCcEEEEcCCCCCC
Q 003773 582 YNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPKWLT-LLTNLRELKLFSCVNCE 660 (796)
Q Consensus 582 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~ 660 (796)
.++++|+.|+++.|.+.+. .+..+..+++|++|+++++....+|..+. .+++|+.|++++|....
T Consensus 171 ~~l~~L~~L~l~~n~l~~~--------------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 171 AGLTFLEELEIDASDLQSY--------------EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp TTCCEEEEEEEEETTCCEE--------------CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT
T ss_pred cCCCCCCEEECCCCCcCcc--------------CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc
Confidence 4455566666666553221 11233344455555555555444443322 35555555555553111
Q ss_pred CCCccccccccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeeccccccccccccccccccccCCCCc
Q 003773 661 HLPPLGKLLLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPR 740 (796)
Q Consensus 661 ~lp~l~~l~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~ 740 (796)
++ ..... .....+.++.+++.++ .+..+.+. ..|..+..+++
T Consensus 237 -~~---------------------~~~l~--------------~~~~~~~l~~l~L~~~-~l~~~~l~-~l~~~l~~l~~ 278 (353)
T 2z80_A 237 -FH---------------------FSELS--------------TGETNSLIKKFTFRNV-KITDESLF-QVMKLLNQISG 278 (353)
T ss_dssp -CC---------------------CC--------------------CCCCCCEEEEESC-BCCHHHHH-HHHHHHHTCTT
T ss_pred -cc---------------------ccccc--------------cccccchhhccccccc-cccCcchh-hhHHHHhcccC
Confidence 11 00000 0113445666655554 34333221 22566788999
Q ss_pred cceeeccCCCCCCCCCcCC-CCCCCccEEEEcCCCchhh
Q 003773 741 LSSLEIDCCSKLNVLPDHL-LQTTTLQELSIRGCPILEE 778 (796)
Q Consensus 741 L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~~~~l~~ 778 (796)
|++|++++| .++.+|..+ ..+++|++|++++|+...+
T Consensus 279 L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 279 LLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 999999999 566888875 7899999999999986443
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=9.2e-18 Score=188.16 Aligned_cols=260 Identities=19% Similarity=0.182 Sum_probs=185.6
Q ss_pred CcccceeeecccccCCCcccccccccccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhcccc
Q 003773 425 VACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGKLM 504 (796)
Q Consensus 425 ~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 504 (796)
...++.|+++ ++.+..+|..+. ++|++|++++|.++.+|. .+++|++|+|++|. +..+|. .++
T Consensus 39 ~~~l~~L~ls--------~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~ 101 (622)
T 3g06_A 39 NNGNAVLNVG--------ESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPP 101 (622)
T ss_dssp HHCCCEEECC--------SSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCT
T ss_pred CCCCcEEEec--------CCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCC
Confidence 3468899998 777778888765 789999999999998887 67899999999886 677876 678
Q ss_pred CCCeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhcccccc
Q 003773 505 NMRSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNK 584 (796)
Q Consensus 505 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~ 584 (796)
+|++|++++| .+..+|. .+++|+.|++ ..+... ..+.. +++|+.+.+.+.. +..++ ..+
T Consensus 102 ~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L--~~N~l~-~lp~~------l~~L~~L~Ls~N~-l~~l~-------~~~ 160 (622)
T 3g06_A 102 GLLELSIFSN-PLTHLPA---LPSGLCKLWI--FGNQLT-SLPVL------PPGLQELSVSDNQ-LASLP-------ALP 160 (622)
T ss_dssp TCCEEEECSC-CCCCCCC---CCTTCCEEEC--CSSCCS-CCCCC------CTTCCEEECCSSC-CSCCC-------CCC
T ss_pred CCCEEECcCC-cCCCCCC---CCCCcCEEEC--CCCCCC-cCCCC------CCCCCEEECcCCc-CCCcC-------Ccc
Confidence 8999999988 5667776 4567777753 233221 11211 2444555544421 11111 134
Q ss_pred ccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCCCCCc
Q 003773 585 KNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCEHLPP 664 (796)
Q Consensus 585 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~ 664 (796)
.+|+.|.++.|.+.... ..+++|+.|++++|.+..+|.. +++|+.|++++|. +..+|.
T Consensus 161 ~~L~~L~L~~N~l~~l~------------------~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~-l~~l~~ 218 (622)
T 3g06_A 161 SELCKLWAYNNQLTSLP------------------MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNR-LTSLPA 218 (622)
T ss_dssp TTCCEEECCSSCCSCCC------------------CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSSCCC
T ss_pred CCCCEEECCCCCCCCCc------------------ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCc-ccccCC
Confidence 67888888887754311 2357899999999988887764 5789999999884 555664
Q ss_pred cccc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeeccccccccccccccccccccCCCCccce
Q 003773 665 LGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSS 743 (796)
Q Consensus 665 l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~ 743 (796)
. + +|+.|++++|. +..++ ..+++|+.|+++++ .++.+ |. .+++|++
T Consensus 219 ~--~~~L~~L~Ls~N~-L~~lp--------------------~~l~~L~~L~Ls~N-~L~~l------p~---~~~~L~~ 265 (622)
T 3g06_A 219 L--PSGLKELIVSGNR-LTSLP--------------------VLPSELKELMVSGN-RLTSL------PM---LPSGLLS 265 (622)
T ss_dssp C--CTTCCEEECCSSC-CSCCC--------------------CCCTTCCEEECCSS-CCSCC------CC---CCTTCCE
T ss_pred C--CCCCCEEEccCCc-cCcCC--------------------CCCCcCcEEECCCC-CCCcC------Cc---ccccCcE
Confidence 2 3 78888888764 22222 26789999988887 55533 33 6789999
Q ss_pred eeccCCCCCCCCCcCCCCCCCccEEEEcCCCchhh
Q 003773 744 LEIDCCSKLNVLPDHLLQTTTLQELSIRGCPILEE 778 (796)
Q Consensus 744 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~ 778 (796)
|+|++| .+..+|..+.++++|+.|++++|+.-..
T Consensus 266 L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 266 LSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp EECCSS-CCCSCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred EeCCCC-CCCcCCHHHhhccccCEEEecCCCCCCc
Confidence 999999 6669999999999999999999986544
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=1.1e-17 Score=183.06 Aligned_cols=109 Identities=23% Similarity=0.263 Sum_probs=70.0
Q ss_pred hhhccCCcEEEEcCCCCCCCCCccccc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeeccccc
Q 003773 642 LTLLTNLRELKLFSCVNCEHLPPLGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLD 720 (796)
Q Consensus 642 ~~~l~~L~~L~L~~~~~~~~lp~l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 720 (796)
+..+++|++|+|++| .+..+|.+..+ +|+.|++++|......+.. +..+++|+.|+++++
T Consensus 192 ~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----------------~~~l~~L~~L~L~~n- 252 (452)
T 3zyi_A 192 FEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNHFPEIRPGS-----------------FHGLSSLKKLWVMNS- 252 (452)
T ss_dssp TTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTSCCSEECGGG-----------------GTTCTTCCEEECTTS-
T ss_pred ccCCCCCCEEECCCC-cccccccccccccccEEECcCCcCcccCccc-----------------ccCccCCCEEEeCCC-
Confidence 345566666666666 34445555555 6666666665533322222 236778888866665
Q ss_pred cccccccccccccccCCCCccceeeccCCCCCCCCCc-CCCCCCCccEEEEcCCCc
Q 003773 721 ELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLPD-HLLQTTTLQELSIRGCPI 775 (796)
Q Consensus 721 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~ 775 (796)
.+.+..+..+..+++|++|+|++| .+..+|. .+..+++|+.|++++||.
T Consensus 253 -----~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 253 -----QVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp -----CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred -----cCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCCc
Confidence 333344666778889999999988 4556654 456788899999998874
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=1.4e-17 Score=181.62 Aligned_cols=109 Identities=21% Similarity=0.294 Sum_probs=70.4
Q ss_pred hhhccCCcEEEEcCCCCCCCCCccccc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeeccccc
Q 003773 642 LTLLTNLRELKLFSCVNCEHLPPLGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLD 720 (796)
Q Consensus 642 ~~~l~~L~~L~L~~~~~~~~lp~l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 720 (796)
+..+++|++|+|++| .+..+|.+..+ +|+.|++++|......+.. +..+++|+.|+++++
T Consensus 181 ~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----------------~~~l~~L~~L~L~~n- 241 (440)
T 3zyj_A 181 FEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGNHLSAIRPGS-----------------FQGLMHLQKLWMIQS- 241 (440)
T ss_dssp TTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTSCCCEECTTT-----------------TTTCTTCCEEECTTC-
T ss_pred hhcccccCeecCCCC-cCccccccCCCcccCEEECCCCccCccChhh-----------------hccCccCCEEECCCC-
Confidence 445666666666666 34456666666 6777777665432222221 236778888866664
Q ss_pred cccccccccccccccCCCCccceeeccCCCCCCCCCc-CCCCCCCccEEEEcCCCc
Q 003773 721 ELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLPD-HLLQTTTLQELSIRGCPI 775 (796)
Q Consensus 721 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~ 775 (796)
.+....+..+..+++|++|+|++| .+..+|. .+..+++|+.|++++||.
T Consensus 242 -----~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 242 -----QIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp -----CCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred -----ceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCCc
Confidence 333344566778888999999988 4555554 456788889999988885
No 56
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=8.7e-18 Score=193.32 Aligned_cols=365 Identities=19% Similarity=0.131 Sum_probs=209.3
Q ss_pred CCceEEEEEeecCCCCCCCCCCCCCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCcccccccccc
Q 003773 372 GEKVRHLGLNFEGGASFPMSTPEFNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREIPE 451 (796)
Q Consensus 372 ~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~ 451 (796)
...++.+.+..+.+...+ ...|.+++.|+.++++ .+.+..+++..|.++++|++|+++ ++.+..+|+
T Consensus 75 l~~L~~L~Ls~N~i~~i~--~~~f~~L~~L~~L~Ls---~N~l~~l~~~~f~~L~~L~~L~Ls--------~N~l~~l~~ 141 (635)
T 4g8a_A 75 FPELQVLDLSRCEIQTIE--DGAYQSLSHLSTLILT---GNPIQSLALGAFSGLSSLQKLVAV--------ETNLASLEN 141 (635)
T ss_dssp CTTCCEEECTTCCCCEEC--TTTTTTCTTCCEEECT---TCCCCEECGGGGTTCTTCCEEECT--------TSCCCCSTT
T ss_pred CCCCCEEECCCCcCCCcC--hhHhcCCCCCCEEEcc---CCcCCCCCHHHhcCCCCCCEEECC--------CCcCCCCCh
Confidence 457899999888776432 2346677777777776 344566777789999999999999 666777754
Q ss_pred -cccCccccceEecCCCCcc--ccchhhhccCCccEeeccccccccccchhhccccCCC----eeecCCccccccCcc--
Q 003773 452 -NIGKLIHLKYLNLSELCIE--RLPETLCELYNLQKLAVRWCTNLRELPAGIGKLMNMR----SLMNGQTEKLKYLPI-- 522 (796)
Q Consensus 452 -~~~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~----~L~l~~~~~~~~~p~-- 522 (796)
.++++++|++|++++|.++ .+|..++++++|++|++++|......|..+..+.+++ .++++.|. +..++.
T Consensus 142 ~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~-l~~i~~~~ 220 (635)
T 4g8a_A 142 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGA 220 (635)
T ss_dssp CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC-CCEECTTT
T ss_pred hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc-ccccCccc
Confidence 5899999999999999987 4578899999999999999874443444554444332 22222221 000000
Q ss_pred --------------------------------------------------------------------------------
Q 003773 523 -------------------------------------------------------------------------------- 522 (796)
Q Consensus 523 -------------------------------------------------------------------------------- 522 (796)
T Consensus 221 ~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 300 (635)
T 4g8a_A 221 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIID 300 (635)
T ss_dssp TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTT
T ss_pred ccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhh
Confidence
Q ss_pred ----------------------cCCCCCCcccCCCeeeCCccCCCCccccc----------------ccccCCCCCccee
Q 003773 523 ----------------------GISRLTSLRTLEKFVVGGGVDGGSTCRLE----------------SLKNLQLLRECRV 564 (796)
Q Consensus 523 ----------------------~i~~l~~L~~L~~~~~~~~~~~~~~~~l~----------------~l~~L~~L~~l~l 564 (796)
.+....+|+.|+ ...+.........+. ....+..|+.+.+
T Consensus 301 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~--l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~l 378 (635)
T 4g8a_A 301 LFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE--LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL 378 (635)
T ss_dssp TTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEE--EESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEEC
T ss_pred hhhhhcccccccccccccccccccccchhhhhhh--cccccccCcCcccchhhhhcccccccCCCCcccccccccccchh
Confidence 000111222222 111111110011111 1112233333332
Q ss_pred cCCCCCCChhhhhhccccccccccceEEEeccccCCCCCcCc----------cCchhHHHHHhhCCCCCCCcEEEEeecC
Q 003773 565 EGLSNVSHVDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEGR----------RKNEKDKQLLEALQPPLNVEELWILFYG 634 (796)
Q Consensus 565 ~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 634 (796)
..... ............+.+|+.+++..+........... ............+..+++++.++++.+.
T Consensus 379 s~n~l--~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~ 456 (635)
T 4g8a_A 379 SRNGL--SFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 456 (635)
T ss_dssp CSSCC--BEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC
T ss_pred hcccc--ccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccc
Confidence 22100 00000011122334444444443332111000000 0000000001223455677777777776
Q ss_pred CCCC-CchhhhccCCcEEEEcCCCCCCC-CCc-cccc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCc
Q 003773 635 GNIF-PKWLTLLTNLRELKLFSCVNCEH-LPP-LGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPK 710 (796)
Q Consensus 635 ~~~~-p~~~~~l~~L~~L~L~~~~~~~~-lp~-l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (796)
.... |..+..+++|+.|++++|..... .|. +..+ +|+.|++++|......+.. +..+++
T Consensus 457 l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~-----------------f~~l~~ 519 (635)
T 4g8a_A 457 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA-----------------FNSLSS 519 (635)
T ss_dssp CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT-----------------TTTCTT
T ss_pred cccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHH-----------------HcCCCC
Confidence 6543 44555788888888888865543 343 6667 8888888887543333322 347899
Q ss_pred cceeeccccccccccccccccccccCCCCccceeeccCCCCCCCCCcCCCCC-CCccEEEEcCCCchh
Q 003773 711 LKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLPDHLLQT-TTLQELSIRGCPILE 777 (796)
Q Consensus 711 L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l-~~L~~L~l~~~~~l~ 777 (796)
|++|+++++ .+.+..+..+..+++|++|+|++|+.....|..+..+ ++|++|++++||.--
T Consensus 520 L~~L~Ls~N------~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 520 LQVLNMSHN------NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CCEEECTTS------CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCEEECCCC------cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 999977765 3444446678899999999999996666567777777 689999999998643
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=1.3e-17 Score=172.46 Aligned_cols=239 Identities=15% Similarity=0.106 Sum_probs=126.8
Q ss_pred ccccccccccccCccccceEecCCCCccccchh-hhccCCccEeeccccccc--cccchhhccccCCCeeecCCcccccc
Q 003773 443 QNFIREIPENIGKLIHLKYLNLSELCIERLPET-LCELYNLQKLAVRWCTNL--RELPAGIGKLMNMRSLMNGQTEKLKY 519 (796)
Q Consensus 443 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~--~~lp~~~~~l~~L~~L~l~~~~~~~~ 519 (796)
++.+..+|..+. ++|++|++++|.++.+|.. +.++++|++|++++|... ...|..+..+++|++|++++| .+..
T Consensus 16 ~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~ 92 (306)
T 2z66_A 16 SKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVIT 92 (306)
T ss_dssp SSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEE
T ss_pred CCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-cccc
Confidence 445555665432 4667777777766666654 466677777777665522 112455556667777777666 3445
Q ss_pred CcccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhccccccccccceEEEeccccC
Q 003773 520 LPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLHLEFGRVVD 599 (796)
Q Consensus 520 ~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 599 (796)
+|..+..+++|++|++ ..+.. ..... ...+..+++|+.|+++.|.+..
T Consensus 93 l~~~~~~l~~L~~L~l--~~n~l----------------------~~~~~--------~~~~~~l~~L~~L~l~~n~l~~ 140 (306)
T 2z66_A 93 MSSNFLGLEQLEHLDF--QHSNL----------------------KQMSE--------FSVFLSLRNLIYLDISHTHTRV 140 (306)
T ss_dssp EEEEEETCTTCCEEEC--TTSEE----------------------ESSTT--------TTTTTTCTTCCEEECTTSCCEE
T ss_pred ChhhcCCCCCCCEEEC--CCCcc----------------------ccccc--------chhhhhccCCCEEECCCCcCCc
Confidence 5555556666665542 11110 00000 0012233334444443333211
Q ss_pred CCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCC-CCCc-cccc-cccceecc
Q 003773 600 GEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCE-HLPP-LGKL-LLEKLTLY 676 (796)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~-~lp~-l~~l-~L~~L~l~ 676 (796)
..|..+..+++|++|++++|...+ .+|. +..+ +|+.|+++
T Consensus 141 -------------------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 141 -------------------------------------AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183 (306)
T ss_dssp -------------------------------------CSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred -------------------------------------cchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECC
Confidence 112333445555555555553322 2333 4444 55555555
Q ss_pred ccccceEeCccccCCCCCCccCCCCCCcccCCCccceeeccccccccccccccccccccCCCCccceeeccCCCCCCCCC
Q 003773 677 NLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLP 756 (796)
Q Consensus 677 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 756 (796)
+|......+.. +..+++|+.|+++++ .++ +..+..+..+++|++|++++|+.....|
T Consensus 184 ~n~l~~~~~~~-----------------~~~l~~L~~L~L~~N-~l~-----~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 184 QCQLEQLSPTA-----------------FNSLSSLQVLNMSHN-NFF-----SLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp TSCCCEECTTT-----------------TTTCTTCCEEECTTS-CCS-----BCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred CCCcCCcCHHH-----------------hcCCCCCCEEECCCC-ccC-----ccChhhccCcccCCEeECCCCCCcccCH
Confidence 54322211111 236677888866665 232 2224456778889999999886666667
Q ss_pred cCCCCC-CCccEEEEcCCCch
Q 003773 757 DHLLQT-TTLQELSIRGCPIL 776 (796)
Q Consensus 757 ~~~~~l-~~L~~L~l~~~~~l 776 (796)
..+..+ ++|+.|++++|+.-
T Consensus 241 ~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 241 QELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp SSCCCCCTTCCEEECTTCCEE
T ss_pred HHHHhhhccCCEEEccCCCee
Confidence 777777 48899999888853
No 58
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.72 E-value=4.8e-20 Score=203.16 Aligned_cols=364 Identities=19% Similarity=0.139 Sum_probs=204.4
Q ss_pred CCceEEEEEeecCCCCCCCC--CCCCCCccEEEEecCCCCCCCCchh---hHHHhhhcCcccceeeecccccCCCccccc
Q 003773 372 GEKVRHLGLNFEGGASFPMS--TPEFNRLRTLLIYDLSPYSPSLNGS---ILVELFSKVACLRALVIRQWFVPLDDQNFI 446 (796)
Q Consensus 372 ~~~~~~l~l~~~~~~~~~~~--~~~~~~l~~L~~~~l~~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 446 (796)
+..++.+.+..+........ ...+++++.|.+.+.. .... .....+..+++|++|++++ +.+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~-----l~~~~~~~l~~~l~~~~~L~~L~Ls~--------n~l 68 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-----LTEARCKDISSALRVNPALAELNLRS--------NEL 68 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-----CCHHHHHHHHHHHHTCTTCCEEECTT--------CCC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCC-----CCHHHHHHHHHHHHhCCCcCEEeCCC--------CcC
Confidence 34567777766655422111 2345666666555432 2111 3345577788888888884 333
Q ss_pred cc-ccccc-cCcc----ccceEecCCCCcc-----ccchhhhccCCccEeeccccccccccchhhc-----cccCCCeee
Q 003773 447 RE-IPENI-GKLI----HLKYLNLSELCIE-----RLPETLCELYNLQKLAVRWCTNLRELPAGIG-----KLMNMRSLM 510 (796)
Q Consensus 447 ~~-lp~~~-~~l~----~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~-----~l~~L~~L~ 510 (796)
.. .+..+ ..+. +|++|++++|.++ .+|..+.++++|++|++++|......+..+. ..++|++|+
T Consensus 69 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 148 (461)
T 1z7x_W 69 GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ 148 (461)
T ss_dssp HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred ChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEE
Confidence 32 12222 2344 6888888888877 4677788888888888888773322233222 245788888
Q ss_pred cCCccccc----cCcccCCCCCCcccCCCeeeCCccCCCCccccc-ccc-cCCCCCcceecCCCCCCChhhhhhcccccc
Q 003773 511 NGQTEKLK----YLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLE-SLK-NLQLLRECRVEGLSNVSHVDEAERLQLYNK 584 (796)
Q Consensus 511 l~~~~~~~----~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~-~l~-~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~ 584 (796)
+++|.... .++..+..+++|++|++ .++.........+. .+. .+..|+.+.+.++.-...........+..+
T Consensus 149 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L--~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 226 (461)
T 1z7x_W 149 LEYCSLSAASCEPLASVLRAKPDFKELTV--SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK 226 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCTTCCEEEC--CSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCEEEC--cCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhC
Confidence 88884332 23455666778888863 22222110011111 111 234566666655422111111123345677
Q ss_pred ccccceEEEeccccCCCCCcCccCchhHHHHHhh-CCCCCCCcEEEEeecCCCC-----CCchhhhccCCcEEEEcCCCC
Q 003773 585 KNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEA-LQPPLNVEELWILFYGGNI-----FPKWLTLLTNLRELKLFSCVN 658 (796)
Q Consensus 585 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~-----~p~~~~~l~~L~~L~L~~~~~ 658 (796)
++|+.|++++|.+.+ .....+... ...+++|++|++++|.... ++..+..+++|++|++++|..
T Consensus 227 ~~L~~L~Ls~n~l~~----------~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 227 ASLRELALGSNKLGD----------VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp TTCCEEECCSSBCHH----------HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred CCccEEeccCCcCCh----------HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence 889999888876421 112223233 2357889999998887765 566667788999999988853
Q ss_pred CCC----CCc-cc-cc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeecccccccccccccccc
Q 003773 659 CEH----LPP-LG-KL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTR 731 (796)
Q Consensus 659 ~~~----lp~-l~-~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~ 731 (796)
... +.. +. .. +|+.|++++|.........+. ..+..+++|++|+++++ .+........
T Consensus 297 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~-------------~~l~~~~~L~~L~Ls~n-~i~~~~~~~l- 361 (461)
T 1z7x_W 297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS-------------SVLAQNRFLLELQISNN-RLEDAGVREL- 361 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH-------------HHHHHCSSCCEEECCSS-BCHHHHHHHH-
T ss_pred chHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH-------------HHHhhCCCccEEEccCC-ccccccHHHH-
Confidence 221 111 11 12 688888887752211000000 01235678888877776 4443221000
Q ss_pred ccccC-CCCccceeeccCCCCCC----CCCcCCCCCCCccEEEEcCCCc
Q 003773 732 KENIS-IMPRLSSLEIDCCSKLN----VLPDHLLQTTTLQELSIRGCPI 775 (796)
Q Consensus 732 ~~~~~-~l~~L~~L~l~~c~~l~----~lp~~~~~l~~L~~L~l~~~~~ 775 (796)
...+. ..++|++|++++|.... .+|..+..+++|++|++++|+.
T Consensus 362 ~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred HHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 11111 25788888888884332 5666666778888888888864
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=1.2e-17 Score=173.50 Aligned_cols=264 Identities=15% Similarity=0.116 Sum_probs=165.2
Q ss_pred EEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCcccccccc-cccccCccccceEecCCCCccccchhhhc
Q 003773 400 TLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREI-PENIGKLIHLKYLNLSELCIERLPETLCE 478 (796)
Q Consensus 400 ~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~i~~ 478 (796)
.+.+.++. .+.....+...+..+++|+.|+++ ++.+..+ |..++.+++|++|++++|.++.++. +.+
T Consensus 11 ~l~i~~ls---~~~l~~~~~~~~~~~~~L~~L~L~--------~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~ 78 (317)
T 3o53_A 11 RYKIEKVT---DSSLKQALASLRQSAWNVKELDLS--------GNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LES 78 (317)
T ss_dssp EEEEESCC---TTTHHHHHHHHHTTGGGCSEEECT--------TSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETT
T ss_pred ceeEeecc---ccchhhhHHHHhccCCCCCEEECc--------CCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhh
Confidence 45555655 344566677778888999999999 5666665 4689999999999999999987775 899
Q ss_pred cCCccEeeccccccccccchhhccccCCCeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCcccccccccCCC
Q 003773 479 LYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQL 558 (796)
Q Consensus 479 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~ 558 (796)
+++|++|++++|. +..+| ..++|++|++++|. +..++.. .+++|++|++ ..+.....
T Consensus 79 l~~L~~L~Ls~n~-l~~l~----~~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l--~~N~l~~~------------- 135 (317)
T 3o53_A 79 LSTLRTLDLNNNY-VQELL----VGPSIETLHAANNN-ISRVSCS--RGQGKKNIYL--ANNKITML------------- 135 (317)
T ss_dssp CTTCCEEECCSSE-EEEEE----ECTTCCEEECCSSC-CSEEEEC--CCSSCEEEEC--CSSCCCSG-------------
T ss_pred cCCCCEEECcCCc-ccccc----CCCCcCEEECCCCc-cCCcCcc--ccCCCCEEEC--CCCCCCCc-------------
Confidence 9999999999987 55554 34899999999984 4444432 3566777752 22222111
Q ss_pred CCcceecCCCCCCChhhhhhccccccccccceEEEeccccCCCCCcCccCchhHHHHHhhC-CCCCCCcEEEEeecCCCC
Q 003773 559 LRECRVEGLSNVSHVDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEAL-QPPLNVEELWILFYGGNI 637 (796)
Q Consensus 559 L~~l~l~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~ 637 (796)
....+..+++|+.|++++|.+.+.. +..+ ..+++|+.|++++|.+..
T Consensus 136 ------------------~~~~~~~l~~L~~L~Ls~N~l~~~~--------------~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 136 ------------------RDLDEGCRSRVQYLDLKLNEIDTVN--------------FAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp ------------------GGBCTGGGSSEEEEECTTSCCCEEE--------------GGGGGGGTTTCCEEECTTSCCCE
T ss_pred ------------------cchhhhccCCCCEEECCCCCCCccc--------------HHHHhhccCcCCEEECCCCcCcc
Confidence 1112334445555555555432110 0111 134566666666666555
Q ss_pred CCchhhhccCCcEEEEcCCCCCCCCCc-cccc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceee
Q 003773 638 FPKWLTLLTNLRELKLFSCVNCEHLPP-LGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLK 715 (796)
Q Consensus 638 ~p~~~~~l~~L~~L~L~~~~~~~~lp~-l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 715 (796)
+|... .+++|++|+|++|.. ..+|. +..+ +|+.|++++|. +..++.. +..+++|+.|+
T Consensus 184 ~~~~~-~l~~L~~L~Ls~N~l-~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~-----------------~~~l~~L~~L~ 243 (317)
T 3o53_A 184 VKGQV-VFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNK-LVLIEKA-----------------LRFSQNLEHFD 243 (317)
T ss_dssp EECCC-CCTTCCEEECCSSCC-CEECGGGGGGTTCSEEECTTSC-CCEECTT-----------------CCCCTTCCEEE
T ss_pred ccccc-ccccCCEEECCCCcC-CcchhhhcccCcccEEECcCCc-ccchhhH-----------------hhcCCCCCEEE
Confidence 44332 366777777777743 33333 5566 67777777654 3333322 23677888887
Q ss_pred ccccccccccccccccccccCCCCccceeeccCCCCCCCC
Q 003773 716 IEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVL 755 (796)
Q Consensus 716 l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 755 (796)
+++++ +.. +..+..+..+++|+.|++++|..++..
T Consensus 244 l~~N~-~~~----~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 244 LRGNG-FHC----GTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CTTCC-CBH----HHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred ccCCC-ccC----cCHHHHHhccccceEEECCCchhccCC
Confidence 77663 221 223566778888888888877666544
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.69 E-value=2.6e-17 Score=170.40 Aligned_cols=248 Identities=17% Similarity=0.149 Sum_probs=141.2
Q ss_pred hhcCcccceeeecccccCCCcccccccccccccCccccceEecCCCCcc--ccchhhh-------ccCCccEeecccccc
Q 003773 422 FSKVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIE--RLPETLC-------ELYNLQKLAVRWCTN 492 (796)
Q Consensus 422 ~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~--~lp~~i~-------~l~~L~~L~l~~~~~ 492 (796)
+...++|+.|+++ ++.+ .+|..+... |++|++++|.+. .+|..+. ++++|++|++++|..
T Consensus 39 ~~~~~~L~~l~l~--------~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l 107 (312)
T 1wwl_A 39 YGGGRSLEYLLKR--------VDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV 107 (312)
T ss_dssp EEEEEECTTHHHH--------CCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBC
T ss_pred EccCCCceeEeec--------cccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcc
Confidence 4556667777776 3444 556555443 677777777664 3555444 567777777777664
Q ss_pred ccccchhh--ccccCCCeeecCCccccccCcccCCCC-----CCcccCCCeeeCCccCCCCcccccccccCCCCCcceec
Q 003773 493 LRELPAGI--GKLMNMRSLMNGQTEKLKYLPIGISRL-----TSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVE 565 (796)
Q Consensus 493 ~~~lp~~~--~~l~~L~~L~l~~~~~~~~~p~~i~~l-----~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~ 565 (796)
...+|..+ ..+++|++|++++| .+...|..++.+ ++|++|+ ...+..
T Consensus 108 ~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~--L~~N~l----------------------- 161 (312)
T 1wwl_A 108 TGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLS--IAQAHS----------------------- 161 (312)
T ss_dssp BSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEE--EESCSC-----------------------
T ss_pred cchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEE--eeCCCC-----------------------
Confidence 44566654 66777777777776 334345444444 4555554 222211
Q ss_pred CCCCCCChhhhhhccccccccccceEEEeccccCCCCCcCccCchhHHHHHhhC--CCCCCCcEEEEeecCCCCCCc---
Q 003773 566 GLSNVSHVDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEAL--QPPLNVEELWILFYGGNIFPK--- 640 (796)
Q Consensus 566 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~p~--- 640 (796)
.......+..+++|+.|+++.|.+.+ ...++..+ ..+++|+.|++++|.+..++.
T Consensus 162 --------~~~~~~~~~~l~~L~~L~Ls~N~l~~------------~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 221 (312)
T 1wwl_A 162 --------LNFSCEQVRVFPALSTLDLSDNPELG------------ERGLISALCPLKFPTLQVLALRNAGMETPSGVCS 221 (312)
T ss_dssp --------CCCCTTTCCCCSSCCEEECCSCTTCH------------HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH
T ss_pred --------ccchHHHhccCCCCCEEECCCCCcCc------------chHHHHHHHhccCCCCCEEECCCCcCcchHHHHH
Confidence 11111224455666666666665311 11223333 455666666666666553322
Q ss_pred h-hhhccCCcEEEEcCCCCCCCCCccccccccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeecccc
Q 003773 641 W-LTLLTNLRELKLFSCVNCEHLPPLGKLLLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDL 719 (796)
Q Consensus 641 ~-~~~l~~L~~L~L~~~~~~~~lp~l~~l~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 719 (796)
. +..+++|++|++++|......|. . ....+++|+.|+++++
T Consensus 222 ~~~~~l~~L~~L~Ls~N~l~~~~~~----------------------~----------------~~~~l~~L~~L~Ls~N 263 (312)
T 1wwl_A 222 ALAAARVQLQGLDLSHNSLRDAAGA----------------------P----------------SCDWPSQLNSLNLSFT 263 (312)
T ss_dssp HHHHTTCCCSEEECTTSCCCSSCCC----------------------S----------------CCCCCTTCCEEECTTS
T ss_pred HHHhcCCCCCEEECCCCcCCcccch----------------------h----------------hhhhcCCCCEEECCCC
Confidence 1 12456666666666642222110 0 0124577888876665
Q ss_pred ccccccccccccccccCCCCccceeeccCCCCCCCCCcCCCCCCCccEEEEcCCCc
Q 003773 720 DELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLPDHLLQTTTLQELSIRGCPI 775 (796)
Q Consensus 720 ~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~ 775 (796)
.++.+ |..+. ++|++|++++| .++.+|. +..+++|++|++++|+.
T Consensus 264 -~l~~i------p~~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 264 -GLKQV------PKGLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp -CCSSC------CSSCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred -ccChh------hhhcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCCC
Confidence 34422 44443 88999999998 5666776 77889999999999874
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=8.5e-17 Score=166.41 Aligned_cols=99 Identities=18% Similarity=0.200 Sum_probs=60.1
Q ss_pred cccceeeecccccCCCccccccccccc-ccCccccceEecCCCCcccc---chhhhccCCccEeeccccccccccchhhc
Q 003773 426 ACLRALVIRQWFVPLDDQNFIREIPEN-IGKLIHLKYLNLSELCIERL---PETLCELYNLQKLAVRWCTNLRELPAGIG 501 (796)
Q Consensus 426 ~~L~~L~l~~~~~~~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~l---p~~i~~l~~L~~L~l~~~~~~~~lp~~~~ 501 (796)
++|+.|+++ ++.+..+|.. ++++++|++|++++|.++.+ |..+..+++|++|++++|. +..+|..+.
T Consensus 28 ~~l~~L~L~--------~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~ 98 (306)
T 2z66_A 28 SSATRLELE--------SNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFL 98 (306)
T ss_dssp TTCCEEECC--------SSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEE
T ss_pred CCCCEEECC--------CCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcC
Confidence 356666666 4455555543 46667777777777666544 4556666777777777665 455666666
Q ss_pred cccCCCeeecCCccccccCcc--cCCCCCCcccCC
Q 003773 502 KLMNMRSLMNGQTEKLKYLPI--GISRLTSLRTLE 534 (796)
Q Consensus 502 ~l~~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~ 534 (796)
.+++|++|++++| .+..++. .+..+++|++|+
T Consensus 99 ~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~ 132 (306)
T 2z66_A 99 GLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLD 132 (306)
T ss_dssp TCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEE
T ss_pred CCCCCCEEECCCC-cccccccchhhhhccCCCEEE
Confidence 6777777777766 3344332 455555555554
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.69 E-value=1.4e-16 Score=178.61 Aligned_cols=260 Identities=18% Similarity=0.137 Sum_probs=160.3
Q ss_pred ceEEEEEeecCCCCCCCCCCCCCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCcccccccccccc
Q 003773 374 KVRHLGLNFEGGASFPMSTPEFNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREIPENI 453 (796)
Q Consensus 374 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~ 453 (796)
.++.+.+..+.....+...+ ++++.|.+.+.. +..++. .+++|++|+|+ ++.+..+|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~------l~~lp~----~l~~L~~L~Ls--------~N~l~~lp~-- 98 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNN------LTSLPA----LPPELRTLEVS--------GNQLTSLPV-- 98 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCC------CSCCCC----CCTTCCEEEEC--------SCCCSCCCC--
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCC------CCCCCC----cCCCCCEEEcC--------CCcCCcCCC--
Confidence 46788888777765554333 566666554432 122221 46777888887 555666665
Q ss_pred cCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhccccCCCeeecCCccccccCcccCCCCCCcccC
Q 003773 454 GKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTEKLKYLPIGISRLTSLRTL 533 (796)
Q Consensus 454 ~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 533 (796)
.+++|++|++++|.++.+|. .+.+|++|++++|. +..+|.. +++|++|++++| .+..+|..+ .+|+.|
T Consensus 99 -~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~~---~~L~~L 166 (622)
T 3g06_A 99 -LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPALP---SELCKL 166 (622)
T ss_dssp -CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCCCC---TTCCEE
T ss_pred -CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcCCcc---CCCCEE
Confidence 56777888888877777776 56777788887765 5566653 377777888777 455555432 334444
Q ss_pred CCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhccccccccccceEEEeccccCCCCCcCccCchhHH
Q 003773 534 EKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDK 613 (796)
Q Consensus 534 ~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 613 (796)
++ ..+... .+. ..+++|+.|+++.|.+.+..
T Consensus 167 ~L--~~N~l~-------------------------------~l~----~~~~~L~~L~Ls~N~l~~l~------------ 197 (622)
T 3g06_A 167 WA--YNNQLT-------------------------------SLP----MLPSGLQELSVSDNQLASLP------------ 197 (622)
T ss_dssp EC--CSSCCS-------------------------------CCC----CCCTTCCEEECCSSCCSCCC------------
T ss_pred EC--CCCCCC-------------------------------CCc----ccCCCCcEEECCCCCCCCCC------------
Confidence 31 111110 000 22456677777766643211
Q ss_pred HHHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCCCCCccccc-cccceeccccccceEeCccccCCC
Q 003773 614 QLLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCEHLPPLGKL-LLEKLTLYNLISVKRVGDEFLGIE 692 (796)
Q Consensus 614 ~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~l~~l-~L~~L~l~~~~~l~~~~~~~~~~~ 692 (796)
..+++|+.|.+++|.+..+|.. +++|++|+|++| .+..+| ..+ +|+.|++++|. +..++.
T Consensus 198 ------~~~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N~-L~~lp~------ 258 (622)
T 3g06_A 198 ------TLPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGN-RLTSLP--VLPSELKELMVSGNR-LTSLPM------ 258 (622)
T ss_dssp ------CCCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCCC------
T ss_pred ------CccchhhEEECcCCcccccCCC---CCCCCEEEccCC-ccCcCC--CCCCcCcEEECCCCC-CCcCCc------
Confidence 1235788888888887777753 578888888888 455566 344 78888888764 222221
Q ss_pred CCCccCCCCCCcccCCCccceeeccccccccccccccccccccCCCCccceeeccCCCCCCCCC
Q 003773 693 ESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLP 756 (796)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 756 (796)
.+++|+.|++++| .++.+ |..+..+++|+.|+|++|+.....|
T Consensus 259 --------------~~~~L~~L~Ls~N-~L~~l------p~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 259 --------------LPSGLLSLSVYRN-QLTRL------PESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp --------------CCTTCCEEECCSS-CCCSC------CGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred --------------ccccCcEEeCCCC-CCCcC------CHHHhhccccCEEEecCCCCCCcCH
Confidence 4577888877776 44422 6667888888888888886554333
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.68 E-value=5.6e-16 Score=158.37 Aligned_cols=90 Identities=21% Similarity=0.186 Sum_probs=62.3
Q ss_pred ccccccccccccCccccceEecCCCCccccch-hhhccCCccEeeccccccccccchhhccccCCCeeecCCccccccC-
Q 003773 443 QNFIREIPENIGKLIHLKYLNLSELCIERLPE-TLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTEKLKYL- 520 (796)
Q Consensus 443 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~- 520 (796)
++.+..+|..+ .++|++|++++|.++.+|. .+.++++|++|++++|......|..+..+++|++|++++|..+..+
T Consensus 20 ~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~ 97 (285)
T 1ozn_A 20 QQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD 97 (285)
T ss_dssp SSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC
T ss_pred cCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC
Confidence 56666777543 4678888888888887764 5788888888888887643344667888888888888888534444
Q ss_pred cccCCCCCCcccCC
Q 003773 521 PIGISRLTSLRTLE 534 (796)
Q Consensus 521 p~~i~~l~~L~~L~ 534 (796)
|..+..+++|++|+
T Consensus 98 ~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 98 PATFHGLGRLHTLH 111 (285)
T ss_dssp TTTTTTCTTCCEEE
T ss_pred HHHhcCCcCCCEEE
Confidence 44455555555554
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.68 E-value=1.6e-17 Score=175.50 Aligned_cols=235 Identities=18% Similarity=0.116 Sum_probs=134.0
Q ss_pred hhhHHHhhhcCcccceeeecccccCCCcccccccc-cccccCccccceEecCCCCccccchh-hhccCCccEeecccccc
Q 003773 415 GSILVELFSKVACLRALVIRQWFVPLDDQNFIREI-PENIGKLIHLKYLNLSELCIERLPET-LCELYNLQKLAVRWCTN 492 (796)
Q Consensus 415 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~ 492 (796)
..++...|.++++|++|+++ ++.+..+ |..++++++|++|++++|.++.+|.. ++++++|++|++++|.
T Consensus 65 ~~~~~~~~~~l~~L~~L~L~--------~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~- 135 (353)
T 2z80_A 65 TYISNSDLQRCVNLQALVLT--------SNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP- 135 (353)
T ss_dssp CEECTTTTTTCTTCCEEECT--------TSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-
T ss_pred cccCHHHhccCCCCCEEECC--------CCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC-
Confidence 34444456777778888887 4455554 45677777888888888777777765 6777788888887765
Q ss_pred ccccch--hhccccCCCeeecCCccccccC-cccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCC
Q 003773 493 LRELPA--GIGKLMNMRSLMNGQTEKLKYL-PIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSN 569 (796)
Q Consensus 493 ~~~lp~--~~~~l~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~ 569 (796)
+..+|. .+..+++|++|++++|..+..+ |..++++++|++|+ ...+......+.. +..+++|+.+.+.+..
T Consensus 136 l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~--l~~n~l~~~~~~~---l~~l~~L~~L~l~~n~- 209 (353)
T 2z80_A 136 YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE--IDASDLQSYEPKS---LKSIQNVSHLILHMKQ- 209 (353)
T ss_dssp CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE--EEETTCCEECTTT---TTTCSEEEEEEEECSC-
T ss_pred CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE--CCCCCcCccCHHH---HhccccCCeecCCCCc-
Confidence 556665 5677778888888777544444 44577777777776 3333332222222 3344444455554422
Q ss_pred CCChhhhhhccccccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCC-----CCchhhh
Q 003773 570 VSHVDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNI-----FPKWLTL 644 (796)
Q Consensus 570 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~ 644 (796)
........+..+++|+.|+++.|.+.+..... +........++.+++.++.... +|.++..
T Consensus 210 ---l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-----------l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~ 275 (353)
T 2z80_A 210 ---HILLLEIFVDVTSSVECLELRDTDLDTFHFSE-----------LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ 275 (353)
T ss_dssp ---STTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------------CCCCCCEEEEESCBCCHHHHHHHHHHHHT
T ss_pred ---cccchhhhhhhcccccEEECCCCccccccccc-----------cccccccchhhccccccccccCcchhhhHHHHhc
Confidence 22222223445677888888877754422111 0111223445555555554332 3555556
Q ss_pred ccCCcEEEEcCCCCCCCCCc--cccc-cccceeccccc
Q 003773 645 LTNLRELKLFSCVNCEHLPP--LGKL-LLEKLTLYNLI 679 (796)
Q Consensus 645 l~~L~~L~L~~~~~~~~lp~--l~~l-~L~~L~l~~~~ 679 (796)
+++|++|+|++|. +..+|. ++.+ +|++|++++|.
T Consensus 276 l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 276 ISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCC
Confidence 6666666666663 334444 3455 66666666554
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=3.3e-16 Score=172.22 Aligned_cols=77 Identities=19% Similarity=0.230 Sum_probs=45.4
Q ss_pred cCcccceeeecccccCCCcccccccc-cccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhcc
Q 003773 424 KVACLRALVIRQWFVPLDDQNFIREI-PENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGK 502 (796)
Q Consensus 424 ~~~~L~~L~l~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~ 502 (796)
.+++|+.|+|+ ++.+..+ |..++.+++|++|+|++|.++..++ ++++++|++|+|++|. +..+|.
T Consensus 32 ~~~~L~~L~Ls--------~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~---- 97 (487)
T 3oja_A 32 SAWNVKELDLS--------GNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV---- 97 (487)
T ss_dssp TGGGCCEEECC--------SSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----
T ss_pred cCCCccEEEee--------CCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC----
Confidence 34466666666 4444444 3556666666666666666665444 6666666666666654 443332
Q ss_pred ccCCCeeecCCc
Q 003773 503 LMNMRSLMNGQT 514 (796)
Q Consensus 503 l~~L~~L~l~~~ 514 (796)
.++|++|++++|
T Consensus 98 ~~~L~~L~L~~N 109 (487)
T 3oja_A 98 GPSIETLHAANN 109 (487)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCcCEEECcCC
Confidence 256666666666
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.67 E-value=1.5e-16 Score=165.19 Aligned_cols=261 Identities=13% Similarity=0.062 Sum_probs=147.1
Q ss_pred ccceeeecccccCCCcccccccc-cccccCccccceEecCCCCccccc-hhhhccCCccEeeccccccccccchhhcccc
Q 003773 427 CLRALVIRQWFVPLDDQNFIREI-PENIGKLIHLKYLNLSELCIERLP-ETLCELYNLQKLAVRWCTNLRELPAGIGKLM 504 (796)
Q Consensus 427 ~L~~L~l~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 504 (796)
.++.++++ .+.+... +..+..+++|++|++++|.++.++ ..+.++++|++|++++|. +...++ +..++
T Consensus 11 ~l~i~~ls--------~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~ 80 (317)
T 3o53_A 11 RYKIEKVT--------DSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLS 80 (317)
T ss_dssp EEEEESCC--------TTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCT
T ss_pred ceeEeecc--------ccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcC
Confidence 45566666 3444433 333456789999999999998776 578999999999999987 444444 88999
Q ss_pred CCCeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhcccccc
Q 003773 505 NMRSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNK 584 (796)
Q Consensus 505 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~ 584 (796)
+|++|++++| .++.+| ..++|++|++ ..+.. . .. ....+
T Consensus 81 ~L~~L~Ls~n-~l~~l~----~~~~L~~L~l--~~n~l--------~-----------------------~~---~~~~~ 119 (317)
T 3o53_A 81 TLRTLDLNNN-YVQELL----VGPSIETLHA--ANNNI--------S-----------------------RV---SCSRG 119 (317)
T ss_dssp TCCEEECCSS-EEEEEE----ECTTCCEEEC--CSSCC--------S-----------------------EE---EECCC
T ss_pred CCCEEECcCC-cccccc----CCCCcCEEEC--CCCcc--------C-----------------------Cc---Ccccc
Confidence 9999999998 455444 2356666642 11111 0 00 01123
Q ss_pred ccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCC-Cchh-hhccCCcEEEEcCCCCCCCC
Q 003773 585 KNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIF-PKWL-TLLTNLRELKLFSCVNCEHL 662 (796)
Q Consensus 585 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~-~~l~~L~~L~L~~~~~~~~l 662 (796)
++|+.|+++.|.+.... ...+..+++|+.|++++|.+..+ |..+ ..+++|++|+|++|. +..+
T Consensus 120 ~~L~~L~l~~N~l~~~~--------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~ 184 (317)
T 3o53_A 120 QGKKNIYLANNKITMLR--------------DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDV 184 (317)
T ss_dssp SSCEEEECCSSCCCSGG--------------GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEE
T ss_pred CCCCEEECCCCCCCCcc--------------chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccc
Confidence 45666666666543210 11233345666666666665543 2223 245666666666663 3334
Q ss_pred Cccccc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeeccccccccccccccccccccCCCCcc
Q 003773 663 PPLGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRL 741 (796)
Q Consensus 663 p~l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L 741 (796)
|....+ +|+.|++++|.. ..++.. +..+++|+.|+++++ .++.. |..+..+++|
T Consensus 185 ~~~~~l~~L~~L~Ls~N~l-~~l~~~-----------------~~~l~~L~~L~L~~N-~l~~l------~~~~~~l~~L 239 (317)
T 3o53_A 185 KGQVVFAKLKTLDLSSNKL-AFMGPE-----------------FQSAAGVTWISLRNN-KLVLI------EKALRFSQNL 239 (317)
T ss_dssp ECCCCCTTCCEEECCSSCC-CEECGG-----------------GGGGTTCSEEECTTS-CCCEE------CTTCCCCTTC
T ss_pred ccccccccCCEEECCCCcC-Ccchhh-----------------hcccCcccEEECcCC-cccch------hhHhhcCCCC
Confidence 443344 566666665542 222221 124556666655554 33321 4445556666
Q ss_pred ceeeccCCCCC-CCCCcCCCCCCCccEEEEcCCCchhh
Q 003773 742 SSLEIDCCSKL-NVLPDHLLQTTTLQELSIRGCPILEE 778 (796)
Q Consensus 742 ~~L~l~~c~~l-~~lp~~~~~l~~L~~L~l~~~~~l~~ 778 (796)
+.|++++|+.. ..+|..+..+++|+.|++++|+.++.
T Consensus 240 ~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp CEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred CEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 66666666444 34444445555666666665554444
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.67 E-value=1.3e-16 Score=163.14 Aligned_cols=184 Identities=22% Similarity=0.226 Sum_probs=91.4
Q ss_pred HhhhcCcccceeeecccccCCCcccccccc-cccccCccccceEecCCCC-cccc-chhhhccCCccEeecccccccccc
Q 003773 420 ELFSKVACLRALVIRQWFVPLDDQNFIREI-PENIGKLIHLKYLNLSELC-IERL-PETLCELYNLQKLAVRWCTNLREL 496 (796)
Q Consensus 420 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~-i~~l-p~~i~~l~~L~~L~l~~~~~~~~l 496 (796)
..|.++++|++|+++ ++.+..+ |..++.+++|++|++++|. +..+ |..+.++++|++|++++|......
T Consensus 50 ~~~~~~~~L~~L~l~--------~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 121 (285)
T 1ozn_A 50 ASFRACRNLTILWLH--------SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121 (285)
T ss_dssp TTTTTCTTCCEEECC--------SSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred HHcccCCCCCEEECC--------CCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEEC
Confidence 334455555555555 3333333 4444555555555555554 4444 334455555555555554422222
Q ss_pred chhhccccCCCeeecCCccccccCcc-cCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhh
Q 003773 497 PAGIGKLMNMRSLMNGQTEKLKYLPI-GISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDE 575 (796)
Q Consensus 497 p~~~~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~ 575 (796)
|..+..+++|++|++++|. +..+|. .++.+++|++|+ +.+. .+..
T Consensus 122 ~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~-----------------------------l~~n----~l~~ 167 (285)
T 1ozn_A 122 PGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLF-----------------------------LHGN----RISS 167 (285)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE-----------------------------CCSS----CCCE
T ss_pred HhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEE-----------------------------CCCC----cccc
Confidence 3344455555555555552 222222 244444444443 2211 1111
Q ss_pred hhhccccccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCc-hhhhccCCcEEEEc
Q 003773 576 AERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPK-WLTLLTNLRELKLF 654 (796)
Q Consensus 576 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~L~ 654 (796)
.....+..+++|+.|+++.|.+.+. .+..+..+++|+.|++++|.+..+|. .+..+++|++|+|+
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~--------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHV--------------HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEE--------------CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred cCHHHhcCccccCEEECCCCccccc--------------CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEecc
Confidence 1112244566677777776654321 12344556677777777777766654 35677778888887
Q ss_pred CCCCC
Q 003773 655 SCVNC 659 (796)
Q Consensus 655 ~~~~~ 659 (796)
+|+..
T Consensus 234 ~N~~~ 238 (285)
T 1ozn_A 234 DNPWV 238 (285)
T ss_dssp SSCEE
T ss_pred CCCcc
Confidence 77543
No 68
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.67 E-value=7.7e-16 Score=167.83 Aligned_cols=99 Identities=26% Similarity=0.355 Sum_probs=56.5
Q ss_pred cccceeeecccccCCCcccccccc-cccccCccccceEecCCCCccccc-hhhhccCCccEeeccccccccccch-hhcc
Q 003773 426 ACLRALVIRQWFVPLDDQNFIREI-PENIGKLIHLKYLNLSELCIERLP-ETLCELYNLQKLAVRWCTNLRELPA-GIGK 502 (796)
Q Consensus 426 ~~L~~L~l~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~ 502 (796)
+.++.|+|+ ++.+..+ +..+.++++|++|+|++|.++.++ ..+.++++|++|+|++|. +..+|. .|..
T Consensus 64 ~~l~~L~L~--------~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 134 (440)
T 3zyj_A 64 TNTRLLNLH--------ENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVY 134 (440)
T ss_dssp TTCSEEECC--------SCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCS
T ss_pred CCCcEEEcc--------CCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhc
Confidence 356666666 4444444 355666666666666666666554 356666666666666654 444443 4666
Q ss_pred ccCCCeeecCCccccccCc-ccCCCCCCcccCC
Q 003773 503 LMNMRSLMNGQTEKLKYLP-IGISRLTSLRTLE 534 (796)
Q Consensus 503 l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~ 534 (796)
+++|++|++++|. +..+| ..+.++++|+.|+
T Consensus 135 l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~ 166 (440)
T 3zyj_A 135 LSKLKELWLRNNP-IESIPSYAFNRIPSLRRLD 166 (440)
T ss_dssp CSSCCEEECCSCC-CCEECTTTTTTCTTCCEEE
T ss_pred cccCceeeCCCCc-ccccCHHHhhhCcccCEeC
Confidence 6666666666663 33333 2455555555554
No 69
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.67 E-value=1.1e-18 Score=192.30 Aligned_cols=342 Identities=16% Similarity=0.082 Sum_probs=207.5
Q ss_pred cEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCcccccccccccccCccccceEecCCCCcccc-chhh-
Q 003773 399 RTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERL-PETL- 476 (796)
Q Consensus 399 ~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~i- 476 (796)
+.|+.++++. +.........++..+++|++|++++|.+. ......++..+..+++|++|++++|.+... +..+
T Consensus 3 ~~l~~L~Ls~--~~l~~~~~~~~~~~~~~L~~L~L~~~~l~---~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 77 (461)
T 1z7x_W 3 LDIQSLDIQC--EELSDARWAELLPLLQQCQVVRLDDCGLT---EARCKDISSALRVNPALAELNLRSNELGDVGVHCVL 77 (461)
T ss_dssp EEEEEEEEES--CCCCHHHHHHHHHHHTTCSEEEEESSCCC---HHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH
T ss_pred ccceehhhhh--cccCchhHHHHHhhcCCccEEEccCCCCC---HHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHH
Confidence 4556666652 23334445566889999999999953221 011225677788999999999999998742 3333
Q ss_pred hccC----CccEeecccccccc----ccchhhccccCCCeeecCCccccccCccc-----CCCCCCcccCCCeeeCCccC
Q 003773 477 CELY----NLQKLAVRWCTNLR----ELPAGIGKLMNMRSLMNGQTEKLKYLPIG-----ISRLTSLRTLEKFVVGGGVD 543 (796)
Q Consensus 477 ~~l~----~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~~~p~~-----i~~l~~L~~L~~~~~~~~~~ 543 (796)
..+. +|++|++++|.... .+|..+..+++|++|++++|......+.. ....++|++|++ ..+...
T Consensus 78 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L--~~n~l~ 155 (461)
T 1z7x_W 78 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQL--EYCSLS 155 (461)
T ss_dssp HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC--TTSCCB
T ss_pred HHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEEC--CCCCCC
Confidence 3455 79999999987442 56888999999999999999533222222 223567888863 333221
Q ss_pred CCCccc-ccccccCCCCCcceecCCCCCCChhhhhhcccc-----ccccccceEEEeccccCCCCCcCccCchhHHHHHh
Q 003773 544 GGSTCR-LESLKNLQLLRECRVEGLSNVSHVDEAERLQLY-----NKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLE 617 (796)
Q Consensus 544 ~~~~~~-l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (796)
...... ...+..+++|+.+.+.+.. +.......+. ..++|+.|++++|.+.+ .....+..
T Consensus 156 ~~~~~~l~~~l~~~~~L~~L~L~~n~----i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~----------~~~~~l~~ 221 (461)
T 1z7x_W 156 AASCEPLASVLRAKPDFKELTVSNND----INEAGVRVLCQGLKDSPCQLEALKLESCGVTS----------DNCRDLCG 221 (461)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSB----CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT----------THHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCEEECcCCC----cchHHHHHHHHHHhcCCCCceEEEccCCCCcH----------HHHHHHHH
Confidence 111111 1223445566666665532 2221111121 34589999998887532 22344566
Q ss_pred hCCCCCCCcEEEEeecCCCCC------CchhhhccCCcEEEEcCCCCCCC----CCc-cccc-cccceeccccccceEeC
Q 003773 618 ALQPPLNVEELWILFYGGNIF------PKWLTLLTNLRELKLFSCVNCEH----LPP-LGKL-LLEKLTLYNLISVKRVG 685 (796)
Q Consensus 618 ~l~~~~~L~~L~l~~~~~~~~------p~~~~~l~~L~~L~L~~~~~~~~----lp~-l~~l-~L~~L~l~~~~~l~~~~ 685 (796)
.+..+++|++|++++|..... +.....+++|++|++++|..... ++. +..+ +|+.|++++|.......
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 667788999999998875432 22222578999999999943321 444 5556 79999998875321111
Q ss_pred ccccCCCCCCccCCCCCCcccCCCccceeeccccccccccccccccccccCCCCccceeeccCCCCCCCCC----cCCC-
Q 003773 686 DEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLP----DHLL- 760 (796)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp----~~~~- 760 (796)
..+... .....++|++|++++| .++.... ...+..+..+++|++|++++|......+ ..+.
T Consensus 302 ~~l~~~------------l~~~~~~L~~L~L~~n-~l~~~~~-~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 367 (461)
T 1z7x_W 302 RLLCET------------LLEPGCQLESLWVKSC-SFTAACC-SHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ 367 (461)
T ss_dssp HHHHHH------------HTSTTCCCCEEECTTS-CCBGGGH-HHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred HHHHHH------------hccCCccceeeEcCCC-CCchHHH-HHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcC
Confidence 111000 0113469999998887 3443221 0124456678999999999994322211 2222
Q ss_pred CCCCccEEEEcCCCc
Q 003773 761 QTTTLQELSIRGCPI 775 (796)
Q Consensus 761 ~l~~L~~L~l~~~~~ 775 (796)
..++|++|++++|..
T Consensus 368 ~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 368 PGSVLRVLWLADCDV 382 (461)
T ss_dssp TTCCCCEEECTTSCC
T ss_pred CCCceEEEECCCCCC
Confidence 267999999999964
No 70
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.67 E-value=6.4e-16 Score=169.11 Aligned_cols=196 Identities=22% Similarity=0.185 Sum_probs=105.4
Q ss_pred cccceeeecccccCCCcccccccc-cccccCccccceEecCCCCccccc-hhhhccCCccEeeccccccccccch-hhcc
Q 003773 426 ACLRALVIRQWFVPLDDQNFIREI-PENIGKLIHLKYLNLSELCIERLP-ETLCELYNLQKLAVRWCTNLRELPA-GIGK 502 (796)
Q Consensus 426 ~~L~~L~l~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~ 502 (796)
++|++|+|+ ++.+..+ |..++++++|++|+|++|.++.++ ..+.++++|++|+|++|. +..+|. .+..
T Consensus 75 ~~l~~L~L~--------~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 145 (452)
T 3zyi_A 75 SNTRYLNLM--------ENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEY 145 (452)
T ss_dssp TTCSEEECC--------SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSS
T ss_pred CCccEEECc--------CCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcc
Confidence 456666666 4444444 455666777777777777666554 456667777777777665 444443 3666
Q ss_pred ccCCCeeecCCccccccCcc-cCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhccc
Q 003773 503 LMNMRSLMNGQTEKLKYLPI-GISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQL 581 (796)
Q Consensus 503 l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l 581 (796)
+++|++|++++|. +..+|. .+.++++|+.|++. .+.. + ..+....+
T Consensus 146 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~--~~~~----------------l--------------~~i~~~~~ 192 (452)
T 3zyi_A 146 LSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLG--ELKK----------------L--------------EYISEGAF 192 (452)
T ss_dssp CTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECC--CCTT----------------C--------------CEECTTTT
T ss_pred cCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCC--CCCC----------------c--------------cccChhhc
Confidence 6777777777663 333332 45555555555421 1000 0 00001123
Q ss_pred cccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCC-CchhhhccCCcEEEEcCCCCCC
Q 003773 582 YNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIF-PKWLTLLTNLRELKLFSCVNCE 660 (796)
Q Consensus 582 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~L~~~~~~~ 660 (796)
.++++|+.|+++.|.+.+. ..+..+++|+.|++++|.+..+ |..+..+++|+.|+|++|....
T Consensus 193 ~~l~~L~~L~L~~n~l~~~----------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 256 (452)
T 3zyi_A 193 EGLFNLKYLNLGMCNIKDM----------------PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256 (452)
T ss_dssp TTCTTCCEEECTTSCCSSC----------------CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE
T ss_pred cCCCCCCEEECCCCccccc----------------ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce
Confidence 3445555555555543221 1234455666666666665544 5556677777777777774333
Q ss_pred CCCc-cccc-cccceeccccc
Q 003773 661 HLPP-LGKL-LLEKLTLYNLI 679 (796)
Q Consensus 661 ~lp~-l~~l-~L~~L~l~~~~ 679 (796)
..|. +..+ +|+.|++++|.
T Consensus 257 ~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 257 IERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp ECTTTTTTCTTCCEEECCSSC
T ss_pred ECHHHhcCCCCCCEEECCCCc
Confidence 3232 4555 66666666553
No 71
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.64 E-value=4.1e-17 Score=185.87 Aligned_cols=63 Identities=16% Similarity=0.204 Sum_probs=31.2
Q ss_pred CCCccceeeccccccccccccccccccccCCCCccceeeccCCCCCC-CCCcCCCCCCCccEEEEcCCC
Q 003773 707 AFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLN-VLPDHLLQTTTLQELSIRGCP 774 (796)
Q Consensus 707 ~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~lp~~~~~l~~L~~L~l~~~~ 774 (796)
.+++|+.|++++| .++...+ +..+..+++|++|+|++|+... .++..+..+++|+.|++++|+
T Consensus 461 ~~~~L~~L~L~~n-~l~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 461 YSPNVRWMLLGYV-GESDEGL----MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp SCTTCCEEEECSC-CSSHHHH----HHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred hCccceEeeccCC-CCCHHHH----HHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 3555666655554 2322211 2333456666666666665211 123223345666666666666
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.62 E-value=5.7e-15 Score=150.55 Aligned_cols=63 Identities=22% Similarity=0.315 Sum_probs=44.3
Q ss_pred CCCccceeeccccccccccccccccccccCCCCccceeeccCCCCCCCCCcCCCCCCCccEEEEcCCCch
Q 003773 707 AFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLPDHLLQTTTLQELSIRGCPIL 776 (796)
Q Consensus 707 ~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l 776 (796)
.+++|+.|+++++ .++. ..+..+..+++|++|++++| .++.+|..+..+++|+.|++++||..
T Consensus 146 ~l~~L~~L~L~~N-~l~~-----l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 146 PTPKLEKLSLANN-NLTE-----LPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TCTTCCEEECTTS-CCSC-----CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred cccCCCEEECCCC-cCCc-----cCHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCCcc
Confidence 5566777766554 3332 22344567888888888888 56688888888888888888888853
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=5.5e-15 Score=146.52 Aligned_cols=85 Identities=22% Similarity=0.358 Sum_probs=58.7
Q ss_pred cccccccccCccccceEecCCCCccccch-hhhccCCccEeeccccccccccch-hhccccCCCeeecCCccccccCcc-
Q 003773 446 IREIPENIGKLIHLKYLNLSELCIERLPE-TLCELYNLQKLAVRWCTNLRELPA-GIGKLMNMRSLMNGQTEKLKYLPI- 522 (796)
Q Consensus 446 ~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~- 522 (796)
+..+|. +. .+|++|++++|.++.+|. .+.++++|++|++++|..+..+|. .|..+++|++|++++|..++.+|.
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 666776 43 378888888888888876 678888888888888765666654 677888888888887334444442
Q ss_pred cCCCCCCcccC
Q 003773 523 GISRLTSLRTL 533 (796)
Q Consensus 523 ~i~~l~~L~~L 533 (796)
.+..+++|++|
T Consensus 100 ~f~~l~~L~~L 110 (239)
T 2xwt_C 100 ALKELPLLKFL 110 (239)
T ss_dssp SEECCTTCCEE
T ss_pred HhCCCCCCCEE
Confidence 23444444444
No 74
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.61 E-value=7.2e-16 Score=175.53 Aligned_cols=315 Identities=15% Similarity=0.068 Sum_probs=171.5
Q ss_pred HHHhhhcCcccceeeecccccCCCcccccccccccccCccccceEecCCCCcc-----ccchhhhccCCccEeecccccc
Q 003773 418 LVELFSKVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIE-----RLPETLCELYNLQKLAVRWCTN 492 (796)
Q Consensus 418 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~~~~ 492 (796)
+..+..++++|++|+|++|.+.... ...++.....+++|++|++++|.++ .++..+.++++|++|++++|.
T Consensus 156 l~~~~~~~~~L~~L~L~~~~~~~~~---~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~- 231 (592)
T 3ogk_B 156 LLSIVTHCRKIKTLLMEESSFSEKD---GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE- 231 (592)
T ss_dssp HHHHHHHCTTCSEEECTTCEEECCC---SHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-
T ss_pred HHHHHhhCCCCCEEECccccccCcc---hhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-
Confidence 3344556777777777753211000 0002233445677777777777764 445556677777777777765
Q ss_pred ccccchhhccccCCCeeecCCcccc---ccCcccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCC
Q 003773 493 LRELPAGIGKLMNMRSLMNGQTEKL---KYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSN 569 (796)
Q Consensus 493 ~~~lp~~~~~l~~L~~L~l~~~~~~---~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~ 569 (796)
+..+|..+..+++|++|+++++... ...+..++.+++|+.|++. .......+..+. .+++|+.+.+.++.
T Consensus 232 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~---~~~~~~l~~~~~---~~~~L~~L~Ls~~~- 304 (592)
T 3ogk_B 232 ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLS---YMGPNEMPILFP---FAAQIRKLDLLYAL- 304 (592)
T ss_dssp GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEET---TCCTTTGGGGGG---GGGGCCEEEETTCC-
T ss_pred HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcc---ccchhHHHHHHh---hcCCCcEEecCCCc-
Confidence 4556677777777777777654222 2233445566666666421 111112222222 33444555555433
Q ss_pred CCChhhhhhccccccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEee----------cCCCC--
Q 003773 570 VSHVDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILF----------YGGNI-- 637 (796)
Q Consensus 570 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~----------~~~~~-- 637 (796)
+. .......+..+++|+.|++. +.+ ....+......+++|++|++.+ +....
T Consensus 305 l~--~~~~~~~~~~~~~L~~L~L~-~~~-------------~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~ 368 (592)
T 3ogk_B 305 LE--TEDHCTLIQKCPNLEVLETR-NVI-------------GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR 368 (592)
T ss_dssp CC--HHHHHHHHTTCTTCCEEEEE-GGG-------------HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH
T ss_pred CC--HHHHHHHHHhCcCCCEEecc-Ccc-------------CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH
Confidence 11 11111225677788888877 321 1223333334567788888883 22211
Q ss_pred -CCchhhhccCCcEEEEcCCCCCCC-CCcccc-c-cccceeccccc---cceEeCccccCCCCCCccCCCCCCcccCCCc
Q 003773 638 -FPKWLTLLTNLRELKLFSCVNCEH-LPPLGK-L-LLEKLTLYNLI---SVKRVGDEFLGIEESSVDDTSSSSSVIAFPK 710 (796)
Q Consensus 638 -~p~~~~~l~~L~~L~L~~~~~~~~-lp~l~~-l-~L~~L~l~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (796)
++.....+++|++|++..+..... +..++. + +|+.|++.++. .+...+... + ......++++
T Consensus 369 ~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~-~----------~~~~~~~~~~ 437 (592)
T 3ogk_B 369 GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN-G----------VRSLLIGCKK 437 (592)
T ss_dssp HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH-H----------HHHHHHHCTT
T ss_pred HHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH-H----------HHHHHHhCCC
Confidence 122234578888888855432221 122333 4 67888876432 222211000 0 0001236899
Q ss_pred cceeecccccc-ccccccccccccccCCCCccceeeccCCCCCC-CCCcCCCCCCCccEEEEcCCC
Q 003773 711 LKSLKIEDLDE-LEEWNYRVTRKENISIMPRLSSLEIDCCSKLN-VLPDHLLQTTTLQELSIRGCP 774 (796)
Q Consensus 711 L~~L~l~~~~~-L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~lp~~~~~l~~L~~L~l~~~~ 774 (796)
|+.|+++.|.+ +....+ ......+++|++|+|++|.... .++..+..+++|++|+|++|+
T Consensus 438 L~~L~L~~~~~~l~~~~~----~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 438 LRRFAFYLRQGGLTDLGL----SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp CCEEEEECCGGGCCHHHH----HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred CCEEEEecCCCCccHHHH----HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 99999977654 332222 1122358999999999996332 344445678999999999998
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.60 E-value=1.3e-15 Score=157.72 Aligned_cols=204 Identities=19% Similarity=0.184 Sum_probs=125.5
Q ss_pred CccccceEecCCCCcc-ccchhh--hccCCccEeeccccccccccchhhccc-----cCCCeeecCCccccccCcccCCC
Q 003773 455 KLIHLKYLNLSELCIE-RLPETL--CELYNLQKLAVRWCTNLRELPAGIGKL-----MNMRSLMNGQTEKLKYLPIGISR 526 (796)
Q Consensus 455 ~l~~L~~L~l~~~~i~-~lp~~i--~~l~~L~~L~l~~~~~~~~lp~~~~~l-----~~L~~L~l~~~~~~~~~p~~i~~ 526 (796)
++++|++|++++|.++ .+|..+ .++++|++|++++|. +..+|..++.+ ++|++|++++|......|..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 5666666666666665 455554 666666666666665 33336555555 66666666666433333355666
Q ss_pred CCCcccCCCeeeCCccCCCCccccccc--ccCCCCCcceecCCCCCCChhhhhhccccccccccceEEEeccccCCCCCc
Q 003773 527 LTSLRTLEKFVVGGGVDGGSTCRLESL--KNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLHLEFGRVVDGEGEE 604 (796)
Q Consensus 527 l~~L~~L~~~~~~~~~~~~~~~~l~~l--~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 604 (796)
+++|++|++ ..+...+..+ ....+ ..+.+|+.+.+.+.. +..........+..+++|+.|+++.|.+.+....
T Consensus 172 l~~L~~L~L--s~N~l~~~~~-~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~- 246 (312)
T 1wwl_A 172 FPALSTLDL--SDNPELGERG-LISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAGA- 246 (312)
T ss_dssp CSSCCEEEC--CSCTTCHHHH-HHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC-
T ss_pred CCCCCEEEC--CCCCcCcchH-HHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccch-
Confidence 666666652 2222110000 01111 344455555554431 1222233333345678999999998886542210
Q ss_pred CccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCCCCCccccc-cccceeccccc
Q 003773 605 GRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCEHLPPLGKL-LLEKLTLYNLI 679 (796)
Q Consensus 605 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~l~~l-~L~~L~l~~~~ 679 (796)
..+..+++|+.|++++|.+..+|.++. ++|++|+|++|. +..+|.+..+ +|+.|+++++.
T Consensus 247 ------------~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~-l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 247 ------------PSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNR-LDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp ------------SCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSC-CCSCCCTTTSCEEEEEECTTCT
T ss_pred ------------hhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCC-CCCChhHhhCCCCCEEeccCCC
Confidence 123346799999999999999998876 899999999995 5556778888 99999998865
No 76
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.59 E-value=2.6e-14 Score=150.90 Aligned_cols=297 Identities=12% Similarity=0.082 Sum_probs=172.7
Q ss_pred ccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcC------CHHHH
Q 003773 11 ARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAF------EEIRI 84 (796)
Q Consensus 11 ~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~------~~~~~ 84 (796)
+..+..||||+++++.+.+....+ +++.|+|++|+|||||+++++++. . ++|+++.... +...+
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~~---~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLENY---PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREEL 77 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHHC---SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHH
T ss_pred CCChHhcCChHHHHHHHHHHHhcC---CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHH
Confidence 345677999999999877665422 699999999999999999998762 1 7788765432 45566
Q ss_pred HHHHHHHhcc-----------------CCC-CCccHHHHHHHHHHHhCC-ceEEEEEeCCCCCCc------cChhhHhhh
Q 003773 85 AKAILEVLDK-----------------SAS-SLGEFQSLMQQTQESIRG-KKFFLVLDDVWDGDF------KKWDPFFSC 139 (796)
Q Consensus 85 ~~~i~~~l~~-----------------~~~-~~~~~~~~~~~~~~~l~~-~~~LlvlDd~~~~~~------~~~~~l~~~ 139 (796)
...+.+.+.. ... ...+..+....+.+.... ++.+||+||++.... ..+......
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~ 157 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY 157 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH
Confidence 6666665432 000 113455566666555442 389999999965321 111122222
Q ss_pred ccCCCCCcEEEEEecchhhhhc----------c--CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHH
Q 003773 140 LKNGHHESKILITTRDRSVALQ----------M--GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIAC 207 (796)
Q Consensus 140 ~~~~~~gs~iiiTsr~~~~~~~----------~--~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~ 207 (796)
+....++.++|+|++....... . .....+++.+|+.+|+.+++.......+. . ...+.+.++++
T Consensus 158 ~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~-~---~~~~~~~~i~~ 233 (350)
T 2qen_A 158 AYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL-D---VPENEIEEAVE 233 (350)
T ss_dssp HHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC-C---CCHHHHHHHHH
T ss_pred HHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHH
Confidence 2111246789999887543111 1 11247999999999999999875421111 1 11456788999
Q ss_pred hcCCCchhHHHHHHHHhcCCCHHHHHH-HHhhhhccccccCCCccchhhhhccCCCChhhhhhHHhhhcCCCCCceecHH
Q 003773 208 KCKGLPLAAKVIGNLLRSKRTVSEWQR-ILDSEMWKVEEIGKGLLPPLLLSYNDLPSSSMVKRCFSYCSVFPKDYNIRKE 286 (796)
Q Consensus 208 ~~~g~PLal~~~~~~l~~~~~~~~w~~-~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~k~~fl~~~~fp~~~~i~~~ 286 (796)
.++|+|+++..++..+....+...+.. +.+..... +...+.-.+.+ ++ ..+..+..+|. . .++..
T Consensus 234 ~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~l~~~-~~--~~~~~l~~la~-g---~~~~~ 299 (350)
T 2qen_A 234 LLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGL-------IMGELEELRRR-SP--RYVDILRAIAL-G---YNRWS 299 (350)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-------HHHHHHHHHHH-CH--HHHHHHHHHHT-T---CCSHH
T ss_pred HhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHH-------HHHHHHHHHhC-Ch--hHHHHHHHHHh-C---CCCHH
Confidence 999999999999876533222222211 11110000 00011100111 34 78888888887 2 13444
Q ss_pred HHHHHHHHcCCcCCCCChhHHHHHHHHHHHHHhccccccccccCCCCeeeEEe-cHHHHHHHH
Q 003773 287 ELITLWMAQCYLNSEEDEEMEIIGEEYFNILATRSFFQEFVKDYDDNVMSCKM-HDIVHDFAQ 348 (796)
Q Consensus 287 ~Li~~wia~g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~-h~lv~~~~~ 348 (796)
.+........ - .. + ......+++.|.+.+++.... + .|++ |++++.+.+
T Consensus 300 ~l~~~~~~~~-~-~~---~-~~~~~~~l~~L~~~gli~~~~----~---~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 300 LIRDYLAVKG-T-KI---P-EPRLYALLENLKKMNWIVEED----N---TYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHTT-C-CC---C-HHHHHHHHHHHHHTTSEEEET----T---EEEESSHHHHHHHT
T ss_pred HHHHHHHHHh-C-CC---C-HHHHHHHHHHHHhCCCEEecC----C---EEEEecHHHHHHHc
Confidence 5444332211 0 11 1 234567899999999997541 1 2454 677776653
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.59 E-value=7.3e-15 Score=151.40 Aligned_cols=190 Identities=21% Similarity=0.165 Sum_probs=113.9
Q ss_pred hcCcccceeeecccccCCCcccccccccccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhcc
Q 003773 423 SKVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGK 502 (796)
Q Consensus 423 ~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~ 502 (796)
..+++|+.|+++ ++.+..+| .+..+++|++|++++|.+..+|. +.++++|++|++++|. +..+| .+..
T Consensus 38 ~~l~~L~~L~l~--------~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~ 105 (308)
T 1h6u_A 38 ADLDGITTLSAF--------GTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAG 105 (308)
T ss_dssp HHHHTCCEEECT--------TSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTT
T ss_pred HHcCCcCEEEee--------CCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcC
Confidence 345677777777 44555555 46677777777777777777766 7777777777777766 55554 4777
Q ss_pred ccCCCeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhcccc
Q 003773 503 LMNMRSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLY 582 (796)
Q Consensus 503 l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~ 582 (796)
+++|++|++++| .+..+|. ++.+++|+.|++ ..+... .+.. +.
T Consensus 106 l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l--~~n~l~-----~~~~----------------------------l~ 148 (308)
T 1h6u_A 106 LQSIKTLDLTST-QITDVTP-LAGLSNLQVLYL--DLNQIT-----NISP----------------------------LA 148 (308)
T ss_dssp CTTCCEEECTTS-CCCCCGG-GTTCTTCCEEEC--CSSCCC-----CCGG----------------------------GG
T ss_pred CCCCCEEECCCC-CCCCchh-hcCCCCCCEEEC--CCCccC-----cCcc----------------------------cc
Confidence 777777777777 3444543 666666666652 222110 0000 33
Q ss_pred ccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCCCC
Q 003773 583 NKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCEHL 662 (796)
Q Consensus 583 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l 662 (796)
.+++|+.|+++.|.+.+. ..+..+++|+.|++++|....++. +..+++|++|++++|. +..+
T Consensus 149 ~l~~L~~L~l~~n~l~~~----------------~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~-l~~~ 210 (308)
T 1h6u_A 149 GLTNLQYLSIGNAQVSDL----------------TPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQ-ISDV 210 (308)
T ss_dssp GCTTCCEEECCSSCCCCC----------------GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSC-CCBC
T ss_pred CCCCccEEEccCCcCCCC----------------hhhcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCc-cCcc
Confidence 344455555555443210 013455666666666666666554 5667777777777773 4445
Q ss_pred Cccccc-cccceeccccc
Q 003773 663 PPLGKL-LLEKLTLYNLI 679 (796)
Q Consensus 663 p~l~~l-~L~~L~l~~~~ 679 (796)
+.+..+ +|+.|+++++.
T Consensus 211 ~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 211 SPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp GGGTTCTTCCEEEEEEEE
T ss_pred ccccCCCCCCEEEccCCe
Confidence 556666 77777777654
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.58 E-value=3e-14 Score=144.68 Aligned_cols=87 Identities=22% Similarity=0.274 Sum_probs=58.4
Q ss_pred ccccccccccCccccceEecCCCCccccch-hhhccCCccEeeccccccccccc-hhhccccCCCeeecCCccccccCcc
Q 003773 445 FIREIPENIGKLIHLKYLNLSELCIERLPE-TLCELYNLQKLAVRWCTNLRELP-AGIGKLMNMRSLMNGQTEKLKYLPI 522 (796)
Q Consensus 445 ~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~ 522 (796)
.+..+|..+. ++|++|++++|.++.+|. .+.++++|++|++++|. +..++ ..+..+++|++|++++|......|.
T Consensus 18 ~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp CCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChh
Confidence 3455665443 468888888888877765 67788888888888775 44443 4677788888888888743333335
Q ss_pred cCCCCCCcccCC
Q 003773 523 GISRLTSLRTLE 534 (796)
Q Consensus 523 ~i~~l~~L~~L~ 534 (796)
.++++++|++|+
T Consensus 95 ~~~~l~~L~~L~ 106 (276)
T 2z62_A 95 AFSGLSSLQKLV 106 (276)
T ss_dssp TTTTCTTCCEEE
T ss_pred hhcCCccccEEE
Confidence 566666666664
No 79
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.57 E-value=6.6e-14 Score=151.38 Aligned_cols=300 Identities=11% Similarity=-0.000 Sum_probs=176.4
Q ss_pred ccCcccccHHHHHHHhccc-C---CC--CCcEEEEE--EcCCCCcHHHHHHHHHcCcccc---ccCC-eEEEEEeCCcCC
Q 003773 13 LKLQIEGLDDDNTLALASS-E---QQ--KGLRIISL--FGLGGIGKTTLAQLAFNNEGVK---RKFD-IVIWVCVSDAFE 80 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~~-~---~~--~~~~~v~I--~G~~GiGKTtLa~~~~~~~~~~---~~f~-~~~wv~~~~~~~ 80 (796)
.+..|+||+++++.+...+ . .+ ...+.+.| +|++|+||||||+++++..... ..|. .++|+.+....+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 4578999999999665543 1 12 24467777 9999999999999999863221 1233 367888777778
Q ss_pred HHHHHHHHHHHhccCCCC-CccHHHHHHHHHHHhC--CceEEEEEeCCCCCC------ccChhhHhhhccCC---C--CC
Q 003773 81 EIRIAKAILEVLDKSASS-LGEFQSLMQQTQESIR--GKKFFLVLDDVWDGD------FKKWDPFFSCLKNG---H--HE 146 (796)
Q Consensus 81 ~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~l~--~~~~LlvlDd~~~~~------~~~~~~l~~~~~~~---~--~g 146 (796)
...++..+++.++...+. ..+..+....+.+.+. +++++||+||++... .+.+..+...+... + ..
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 889999999998764332 2234455566666554 679999999996521 12233233333211 2 34
Q ss_pred cEEEEEecchhhhhccC---------ccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcC------C
Q 003773 147 SKILITTRDRSVALQMG---------SIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCK------G 211 (796)
Q Consensus 147 s~iiiTsr~~~~~~~~~---------~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~------g 211 (796)
..+|+||+...+...+. ....+.+.+++.+++.++|...+..... ......+.+..+++.++ |
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~G 257 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLR--DTVWEPRHLELISDVYGEDKGGDG 257 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBC--TTSCCHHHHHHHHHHHCGGGTSCC
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCC--CCCCChHHHHHHHHHHHHhccCCC
Confidence 45888887654321111 1224999999999999999765421111 01112456788999999 9
Q ss_pred CchhHHHHHHHHh-----cC---CCHHHHHHHHhhhhccccccCCCccchhhhhccCCCChhhhhhHHhhhcCCC--CCc
Q 003773 212 LPLAAKVIGNLLR-----SK---RTVSEWQRILDSEMWKVEEIGKGLLPPLLLSYNDLPSSSMVKRCFSYCSVFP--KDY 281 (796)
Q Consensus 212 ~PLal~~~~~~l~-----~~---~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~k~~fl~~~~fp--~~~ 281 (796)
+|..+..+..... .. -+.+.+..++..... ...+..++..||. ..+.++..++.+. .+.
T Consensus 258 ~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~--~~~~~l~aia~l~~~~~~ 326 (412)
T 1w5s_A 258 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSI--HELIILRLIAEATLGGME 326 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCH--HHHHHHHHHHHHHHTTCS
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCH--HHHHHHHHHHHHHhcCCC
Confidence 9976655543221 11 123333333322110 2234456778887 7888888888653 223
Q ss_pred eecHHHHHHHHHHcC--CcCCCCChhHHHHHHHHHHHHHhcccccccc
Q 003773 282 NIRKEELITLWMAQC--YLNSEEDEEMEIIGEEYFNILATRSFFQEFV 327 (796)
Q Consensus 282 ~i~~~~Li~~wia~g--~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 327 (796)
.+...++...+...+ ... ..... ......+++.|.+.+++....
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 327 WINAGLLRQRYEDASLTMYN-VKPRG-YTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp SBCHHHHHHHHHHHHHHHSC-CCCCC-HHHHHHHHHHHHHTTSEEEEC
T ss_pred CccHHHHHHHHHHHHHhhcC-CCCCC-HHHHHHHHHHHHhCCCEEeec
Confidence 455555554442111 110 00001 233567899999999997654
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.57 E-value=1.4e-14 Score=149.19 Aligned_cols=197 Identities=19% Similarity=0.224 Sum_probs=124.3
Q ss_pred ccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhccccCCCeeecCCccccccCcccCCCCCCccc
Q 003773 453 IGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTEKLKYLPIGISRLTSLRT 532 (796)
Q Consensus 453 ~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 532 (796)
...+++|++|++++|.++.+| .+..+++|++|++++|. +..++. +..+++|++|++++|. +..+| .++.+++|+.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCE
Confidence 456889999999999999987 68999999999999986 667776 8999999999999994 55554 4666666666
Q ss_pred CCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhccccccccccceEEEeccccCCCCCcCccCchhH
Q 003773 533 LEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKD 612 (796)
Q Consensus 533 L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 612 (796)
|++ ..+.. . ... .+..+++|+
T Consensus 112 L~l--~~n~l--------~--------------------~~~-----~l~~l~~L~------------------------ 132 (308)
T 1h6u_A 112 LDL--TSTQI--------T--------------------DVT-----PLAGLSNLQ------------------------ 132 (308)
T ss_dssp EEC--TTSCC--------C--------------------CCG-----GGTTCTTCC------------------------
T ss_pred EEC--CCCCC--------C--------------------Cch-----hhcCCCCCC------------------------
Confidence 642 11110 0 000 023333444
Q ss_pred HHHHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCCCCCccccc-cccceeccccccceEeCccccCC
Q 003773 613 KQLLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCEHLPPLGKL-LLEKLTLYNLISVKRVGDEFLGI 691 (796)
Q Consensus 613 ~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~l~~l-~L~~L~l~~~~~l~~~~~~~~~~ 691 (796)
.|++++|....++. +..+++|++|++++|. +..++.+..+ +|+.|++++|.. ..++.
T Consensus 133 --------------~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l-~~~~~----- 190 (308)
T 1h6u_A 133 --------------VLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTPLANLSKLTTLKADDNKI-SDISP----- 190 (308)
T ss_dssp --------------EEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCC-CCCGG-----
T ss_pred --------------EEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChhhcCCCCCCEEECCCCcc-CcChh-----
Confidence 44444444444443 5566677777777763 3444445555 666666665532 11111
Q ss_pred CCCCccCCCCCCcccCCCccceeeccccccccccccccccccccCCCCccceeeccCCCCCCCCCc
Q 003773 692 EESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLPD 757 (796)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 757 (796)
+..+++|++|+++++ .++.. + .+..+++|++|++++|+ +...|.
T Consensus 191 -------------l~~l~~L~~L~L~~N-~l~~~------~-~l~~l~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 191 -------------LASLPNLIEVHLKNN-QISDV------S-PLANTSNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp -------------GGGCTTCCEEECTTS-CCCBC------G-GGTTCTTCCEEEEEEEE-EECCCE
T ss_pred -------------hcCCCCCCEEEccCC-ccCcc------c-cccCCCCCCEEEccCCe-eecCCe
Confidence 236777888877665 33332 1 25678888888888884 444443
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=8.4e-16 Score=161.36 Aligned_cols=116 Identities=17% Similarity=0.259 Sum_probs=60.5
Q ss_pred CCCCC-CCcEEEEeecCC----CCCCchhhhccCCcEEEEcCCCCCC--CCCccccc-cccceeccccccceEeCccccC
Q 003773 619 LQPPL-NVEELWILFYGG----NIFPKWLTLLTNLRELKLFSCVNCE--HLPPLGKL-LLEKLTLYNLISVKRVGDEFLG 690 (796)
Q Consensus 619 l~~~~-~L~~L~l~~~~~----~~~p~~~~~l~~L~~L~L~~~~~~~--~lp~l~~l-~L~~L~l~~~~~l~~~~~~~~~ 690 (796)
+..++ +|++|++++|.. ..+|..+..+++|++|++++|..++ .++.+..+ +|+.|++++|..+.. ....
T Consensus 190 ~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~- 266 (336)
T 2ast_B 190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP--ETLL- 266 (336)
T ss_dssp HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG--GGGG-
T ss_pred HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH--HHHH-
Confidence 34445 666666666632 2245555677788888887776332 23335555 677777766642111 1000
Q ss_pred CCCCCccCCCCCCcccCCCccceeeccccccccccccccccccccCCC-CccceeeccCCCCCCCCCcCCC
Q 003773 691 IEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIM-PRLSSLEIDCCSKLNVLPDHLL 760 (796)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~~~ 760 (796)
.+..+++|+.|++++| +... .+..+ .+|..|++++|......|..+.
T Consensus 267 -------------~l~~~~~L~~L~l~~~--i~~~--------~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 267 -------------ELGEIPTLKTLQVFGI--VPDG--------TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp -------------GGGGCTTCCEEECTTS--SCTT--------CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred -------------HHhcCCCCCEEeccCc--cCHH--------HHHHHHhhCcceEEecccCccccCCccc
Confidence 1235677777777765 2221 11222 2355566766654444554433
No 82
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.56 E-value=1.4e-13 Score=145.85 Aligned_cols=291 Identities=10% Similarity=0.059 Sum_probs=169.7
Q ss_pred cccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCc-----CCHHHHHH
Q 003773 12 RLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDA-----FEEIRIAK 86 (796)
Q Consensus 12 ~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~ 86 (796)
..+..||||+++++.+.+ ... +++.|+|++|+|||+|++++++.. .. .++|+++... .+...+..
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~----~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA----PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS----SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCCHHHHHH
T ss_pred CCHHHhcChHHHHHHHHH-hcC----CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCCHHHHHH
Confidence 356679999999998887 643 699999999999999999998762 22 2678887642 34445555
Q ss_pred HHHHHhcc-------------C-----CC-----------CCccHHHHHHHHHHHhCCceEEEEEeCCCCCC---ccChh
Q 003773 87 AILEVLDK-------------S-----AS-----------SLGEFQSLMQQTQESIRGKKFFLVLDDVWDGD---FKKWD 134 (796)
Q Consensus 87 ~i~~~l~~-------------~-----~~-----------~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~---~~~~~ 134 (796)
.+.+.+.. . .+ ......+....+.+... ++++||+||++..+ ...+.
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~ 158 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLL 158 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCH
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHH
Confidence 55444311 0 00 12234555555544333 49999999996532 12333
Q ss_pred hHhhhccCCCCCcEEEEEecchhhhhc----------cC-c-cceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHH
Q 003773 135 PFFSCLKNGHHESKILITTRDRSVALQ----------MG-S-IDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIG 202 (796)
Q Consensus 135 ~l~~~~~~~~~gs~iiiTsr~~~~~~~----------~~-~-~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~ 202 (796)
.+...+.....+.++|+|++....... .. . ...+++.+|+.+|+.+++.......+. . ... .
T Consensus 159 ~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~-~~~----~ 232 (357)
T 2fna_A 159 PALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-D-FKD----Y 232 (357)
T ss_dssp HHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-C-CCC----H
T ss_pred HHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-C-CCc----H
Confidence 333333222246789999997543111 11 1 257999999999999999875421111 1 111 2
Q ss_pred HHHHHhcCCCchhHHHHHHHHhcCCCHHHHHH-HHhhhhccccccCCCccchhh-hhc--cCCCChhhhhhHHhhhcCCC
Q 003773 203 RKIACKCKGLPLAAKVIGNLLRSKRTVSEWQR-ILDSEMWKVEEIGKGLLPPLL-LSY--NDLPSSSMVKRCFSYCSVFP 278 (796)
Q Consensus 203 ~~i~~~~~g~PLal~~~~~~l~~~~~~~~w~~-~l~~~~~~~~~~~~~~~~~l~-~s~--~~L~~~~~~k~~fl~~~~fp 278 (796)
.+|++.++|+|+++..++..+....+...|.. +.+.... .+...+. ..+ ..+++ ..+..+..+|. .
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~l~~--~~~~~l~~la~-g 302 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK-------LILKEFENFLHGREIARK--RYLNIMRTLSK-C 302 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-------HHHHHHHHHHTTCGGGHH--HHHHHHHHHTT-C
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH-------HHHHHHHHHhhccccccH--HHHHHHHHHHc-C
Confidence 78999999999999999887654333333322 1111000 0011111 111 14555 78888888887 2
Q ss_pred CCceecHHHHHHHHH-HcCCcCCCCChhHHHHHHHHHHHHHhccccccccccCCCCeeeEE-ecHHHHHH
Q 003773 279 KDYNIRKEELITLWM-AQCYLNSEEDEEMEIIGEEYFNILATRSFFQEFVKDYDDNVMSCK-MHDIVHDF 346 (796)
Q Consensus 279 ~~~~i~~~~Li~~wi-a~g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~-~h~lv~~~ 346 (796)
. +...+..... ..|. .. .......+++.|.+.+++.... + .|+ .|++++++
T Consensus 303 --~--~~~~l~~~~~~~~g~--~~----~~~~~~~~L~~L~~~gli~~~~----~---~y~f~~~~~~~~ 355 (357)
T 2fna_A 303 --G--KWSDVKRALELEEGI--EI----SDSEIYNYLTQLTKHSWIIKEG----E---KYCPSEPLISLA 355 (357)
T ss_dssp --B--CHHHHHHHHHHHHCS--CC----CHHHHHHHHHHHHHTTSEEESS----S---CEEESSHHHHHH
T ss_pred --C--CHHHHHHHHHHhcCC--CC----CHHHHHHHHHHHHhCCCEEecC----C---EEEecCHHHHHh
Confidence 1 3444433211 1121 00 1233567899999999987542 1 255 47777765
No 83
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.55 E-value=8.3e-16 Score=175.12 Aligned_cols=154 Identities=17% Similarity=0.136 Sum_probs=93.9
Q ss_pred CceEEEEEeecCCCCCC-CCC-CCCCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCccccccccc
Q 003773 373 EKVRHLGLNFEGGASFP-MST-PEFNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREIP 450 (796)
Q Consensus 373 ~~~~~l~l~~~~~~~~~-~~~-~~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp 450 (796)
..++.+.+......... ... ..+++|+.|.+.++. ......+..++.++++|++|++++|.+.... ...++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~----~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~---~~~l~ 177 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE----GFSTDGLAAIAATCRNLKELDLRESDVDDVS---GHWLS 177 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE----EEEHHHHHHHHHHCTTCCEEECTTCEEECCC---GGGGG
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC----CCCHHHHHHHHHhCCCCCEEeCcCCccCCcc---hHHHH
Confidence 34566666654432110 011 136677777776542 1223335566678999999999964321111 11233
Q ss_pred ccccCccccceEecCCCC--cc--ccchhhhccCCccEeeccccccccccchhhccccCCCeeecCCccc------cccC
Q 003773 451 ENIGKLIHLKYLNLSELC--IE--RLPETLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTEK------LKYL 520 (796)
Q Consensus 451 ~~~~~l~~L~~L~l~~~~--i~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~------~~~~ 520 (796)
.....+++|++|++++|. +. .++..+.++++|++|++++|..+..+|..+..+++|++|+++.+.. +..+
T Consensus 178 ~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 257 (594)
T 2p1m_B 178 HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL 257 (594)
T ss_dssp GSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHH
T ss_pred HHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHH
Confidence 334467899999999886 32 3344456679999999999877777888888899999998765531 2233
Q ss_pred cccCCCCCCcccC
Q 003773 521 PIGISRLTSLRTL 533 (796)
Q Consensus 521 p~~i~~l~~L~~L 533 (796)
+..++++++|+.|
T Consensus 258 ~~~l~~~~~L~~L 270 (594)
T 2p1m_B 258 SVALSGCKELRCL 270 (594)
T ss_dssp HHHHHTCTTCCEE
T ss_pred HHHHhcCCCcccc
Confidence 4445556666655
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.55 E-value=2.4e-14 Score=145.98 Aligned_cols=158 Identities=20% Similarity=0.095 Sum_probs=78.2
Q ss_pred ccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhccccCCCeeecCCccccccCc-ccCCCCCC
Q 003773 451 ENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTEKLKYLP-IGISRLTS 529 (796)
Q Consensus 451 ~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~ 529 (796)
..+..+++|++|++++|.++.+|.. +.+++|++|++++|. +..+|..+..+++|++|++++| .++.+| ..++.+++
T Consensus 49 ~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~ 125 (290)
T 1p9a_G 49 ATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGE 125 (290)
T ss_dssp GGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTT
T ss_pred HHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCC
Confidence 3455555555555555555544432 455555555555543 4445554555555555555555 223332 23444444
Q ss_pred cccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhccccccccccceEEEeccccCCCCCcCccCc
Q 003773 530 LRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRKN 609 (796)
Q Consensus 530 L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 609 (796)
|+.|++ ..+.. .......+..+++|+.|+++.|.+.....
T Consensus 126 L~~L~L--~~N~l-------------------------------~~~~~~~~~~l~~L~~L~L~~N~l~~l~~------- 165 (290)
T 1p9a_G 126 LQELYL--KGNEL-------------------------------KTLPPGLLTPTPKLEKLSLANNNLTELPA------- 165 (290)
T ss_dssp CCEEEC--TTSCC-------------------------------CCCCTTTTTTCTTCCEEECTTSCCSCCCT-------
T ss_pred CCEEEC--CCCCC-------------------------------CccChhhcccccCCCEEECCCCcCCccCH-------
Confidence 444431 11111 11111123445556666666555432111
Q ss_pred hhHHHHHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCC
Q 003773 610 EKDKQLLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVN 658 (796)
Q Consensus 610 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~ 658 (796)
..+..+++|+.|++++|.+..+|..+..+++|+.|+|.+|+.
T Consensus 166 -------~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 166 -------GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp -------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred -------HHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 123445666777777776666676666666777777776653
No 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.54 E-value=4.2e-16 Score=171.37 Aligned_cols=220 Identities=12% Similarity=0.062 Sum_probs=129.7
Q ss_pred hhHHHhhhcCcccceeeecccccCCCcccccccccccccCccccceEecCCCCccccchhhhccCCccEeeccccccccc
Q 003773 416 SILVELFSKVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRE 495 (796)
Q Consensus 416 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~ 495 (796)
..++..|.++++|++|+|+ ++.+...++ ++.+++|++|++++|.++.+|. .++|++|++++|. +..
T Consensus 48 ~~~~~~~~~l~~L~~L~Ls--------~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~N~-l~~ 113 (487)
T 3oja_A 48 QISAADLAPFTKLELLNLS--------SNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNN-ISR 113 (487)
T ss_dssp CCCGGGGTTCTTCCEEECT--------TSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSC-CCC
T ss_pred CCCHHHHhCCCCCCEEEee--------CCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEECcCCc-CCC
Confidence 3444557777888888887 455554444 7777888888888887776664 2778888888776 444
Q ss_pred cchhhccccCCCeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhh
Q 003773 496 LPAGIGKLMNMRSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDE 575 (796)
Q Consensus 496 lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~ 575 (796)
+|. ..+++|++|++++|......|..++.+++|+.|+ ...+...+..+..+. ..++.|+.+.+.+.. +..
T Consensus 114 ~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~--Ls~N~l~~~~~~~l~--~~l~~L~~L~Ls~N~----l~~ 183 (487)
T 3oja_A 114 VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD--LKLNEIDTVNFAELA--ASSDTLEHLNLQYNF----IYD 183 (487)
T ss_dssp EEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEE--CTTSCCCEEEGGGGG--GGTTTCCEEECTTSC----CCE
T ss_pred CCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEE--CCCCCCCCcChHHHh--hhCCcccEEecCCCc----ccc
Confidence 433 2457778888887754444455677777777776 333333221121111 133444444444321 111
Q ss_pred hhhccccccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcC
Q 003773 576 AERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFS 655 (796)
Q Consensus 576 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~ 655 (796)
. .....+++|+.|++++|.+.+ ++..+..+++|+.|++++|.+..+|.++..+++|+.|++++
T Consensus 184 ~--~~~~~l~~L~~L~Ls~N~l~~---------------~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 184 V--KGQVVFAKLKTLDLSSNKLAF---------------MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246 (487)
T ss_dssp E--ECCCCCTTCCEEECCSSCCCE---------------ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTT
T ss_pred c--cccccCCCCCEEECCCCCCCC---------------CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCC
Confidence 1 123346677777777776432 11234455677777777777777777777777777888777
Q ss_pred CCCC-CCCCc-cccc-cccceecc
Q 003773 656 CVNC-EHLPP-LGKL-LLEKLTLY 676 (796)
Q Consensus 656 ~~~~-~~lp~-l~~l-~L~~L~l~ 676 (796)
|+.. ..+|. +..+ .|+.|.+.
T Consensus 247 N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 247 NGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCcCcchHHHHHhCCCCcEEecc
Confidence 7654 23333 4444 55555554
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.54 E-value=1.1e-14 Score=147.81 Aligned_cols=197 Identities=21% Similarity=0.138 Sum_probs=106.3
Q ss_pred hhHHHhhhcCcccceeeecccccCCCccccccccc-ccccCccccceEecCCCCccccc-hhhhccCCccEeeccccccc
Q 003773 416 SILVELFSKVACLRALVIRQWFVPLDDQNFIREIP-ENIGKLIHLKYLNLSELCIERLP-ETLCELYNLQKLAVRWCTNL 493 (796)
Q Consensus 416 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~ 493 (796)
.++...|.++++|++|+++ ++.+..++ ..+..+++|++|++++|.++.++ ..+.++++|++|++++|...
T Consensus 42 ~~~~~~~~~l~~L~~L~l~--------~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 113 (276)
T 2z62_A 42 HLGSYSFFSFPELQVLDLS--------RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113 (276)
T ss_dssp EECTTTTTTCTTCSEEECT--------TCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ccCHhHhccccCCcEEECC--------CCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCcc
Confidence 3333345666666666666 44444443 35666666666666666666554 34666666666666665532
Q ss_pred cccchhhccccCCCeeecCCccccc-cCcccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCC
Q 003773 494 RELPAGIGKLMNMRSLMNGQTEKLK-YLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSH 572 (796)
Q Consensus 494 ~~lp~~~~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~ 572 (796)
...+..+..+++|++|++++|.... .+|..++.+++|++|++ .++.........+..+.+|+.+..
T Consensus 114 ~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L--s~N~l~~~~~~~~~~l~~L~~l~l----------- 180 (276)
T 2z62_A 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL--SSNKIQSIYCTDLRVLHQMPLLNL----------- 180 (276)
T ss_dssp CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC--CSSCCCEECGGGGHHHHTCTTCCE-----------
T ss_pred ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEEC--CCCCCCcCCHHHhhhhhhccccce-----------
Confidence 2222246666666666666663222 24556666666666642 222221111112222222221110
Q ss_pred hhhhhhccccccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCchh-hhccCCcEE
Q 003773 573 VDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPKWL-TLLTNLREL 651 (796)
Q Consensus 573 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~-~~l~~L~~L 651 (796)
.|+++.|.+... ........+|+.|++++|....+|..+ ..+++|++|
T Consensus 181 ----------------~L~ls~n~l~~~---------------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 229 (276)
T 2z62_A 181 ----------------SLDLSLNPMNFI---------------QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKI 229 (276)
T ss_dssp ----------------EEECCSSCCCEE---------------CTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEE
T ss_pred ----------------eeecCCCccccc---------------CccccCCCcccEEECCCCceeecCHhHhcccccccEE
Confidence 455555543211 111223347888888888877776653 578888888
Q ss_pred EEcCCCCCCCCCc
Q 003773 652 KLFSCVNCEHLPP 664 (796)
Q Consensus 652 ~L~~~~~~~~lp~ 664 (796)
+|++|+.....|.
T Consensus 230 ~l~~N~~~c~c~~ 242 (276)
T 2z62_A 230 WLHTNPWDCSCPR 242 (276)
T ss_dssp ECCSSCBCCCTTT
T ss_pred EccCCcccccCCc
Confidence 8888876555444
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.53 E-value=2.2e-13 Score=137.61 Aligned_cols=105 Identities=22% Similarity=0.289 Sum_probs=59.1
Q ss_pred CCCcEEEEeecCCCCCCc-hhhhccCCcEEEEcCCCCCCCCCc--cccccccceeccccccceEeCccccCCCCCCccCC
Q 003773 623 LNVEELWILFYGGNIFPK-WLTLLTNLRELKLFSCVNCEHLPP--LGKLLLEKLTLYNLISVKRVGDEFLGIEESSVDDT 699 (796)
Q Consensus 623 ~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~L~~~~~~~~lp~--l~~l~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 699 (796)
++|+.|+++++.+..+|. .+..+++|++|+|++|. +..+|. ++
T Consensus 109 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~--------------------------------- 154 (270)
T 2o6q_A 109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFD--------------------------------- 154 (270)
T ss_dssp SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTT---------------------------------
T ss_pred cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHcc---------------------------------
Confidence 355555566666655543 34577788888887773 333332 23
Q ss_pred CCCCcccCCCccceeeccccccccccccccccccccCCCCccceeeccCCCCCCCCCc-CCCCCCCccEEEEcCCCc
Q 003773 700 SSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLPD-HLLQTTTLQELSIRGCPI 775 (796)
Q Consensus 700 ~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~ 775 (796)
.+++|+.|+++++ .++ ...+..+..+++|++|+|++| .++.+|. .+..+++|+.|++++||.
T Consensus 155 -------~l~~L~~L~L~~n-~l~-----~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 155 -------KLTSLKELRLYNN-QLK-----RVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp -------TCTTCCEEECCSS-CCS-----CCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred -------CCcccceeEecCC-cCc-----EeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCe
Confidence 4455566654443 222 222334556677777777776 4444544 355667777777777763
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.52 E-value=2e-14 Score=151.19 Aligned_cols=90 Identities=17% Similarity=0.258 Sum_probs=56.3
Q ss_pred ccccccccccccCccccceEecCCCCccccch-hhhccCCccEeeccccccccccch-hhccccCCCeeecCCccccccC
Q 003773 443 QNFIREIPENIGKLIHLKYLNLSELCIERLPE-TLCELYNLQKLAVRWCTNLRELPA-GIGKLMNMRSLMNGQTEKLKYL 520 (796)
Q Consensus 443 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~ 520 (796)
++.+..+|..+ .+++++|+|++|.|+.+|. .+.++++|++|+|++|.....+|. .|.++++|.++...+++.+..+
T Consensus 18 ~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l 95 (350)
T 4ay9_X 18 ESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95 (350)
T ss_dssp STTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred CCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc
Confidence 45566666654 3567777777777777765 467777777777777765555554 3566777665444443345554
Q ss_pred -cccCCCCCCcccCC
Q 003773 521 -PIGISRLTSLRTLE 534 (796)
Q Consensus 521 -p~~i~~l~~L~~L~ 534 (796)
|..+..+++|+.|+
T Consensus 96 ~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLL 110 (350)
T ss_dssp CTTSBCCCTTCCEEE
T ss_pred Cchhhhhcccccccc
Confidence 34466677777765
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.52 E-value=9.4e-14 Score=140.47 Aligned_cols=45 Identities=11% Similarity=0.068 Sum_probs=27.5
Q ss_pred CCCccceeeccccccccccccccccccccCCCCccceeeccCCCCCCCCCcCCCCCCC
Q 003773 707 AFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLPDHLLQTTT 764 (796)
Q Consensus 707 ~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~ 764 (796)
.+++|+.|++.+++ + .+.+|+|+.|+++.|.....+|..+..++.
T Consensus 203 ~l~~L~~L~l~~N~------~-------~~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 203 RLTSLQYIWLHDNP------W-------DCTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TCTTCCEEECCSSC------B-------CCCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCcCCCEEEccCCC------c-------cccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 56677777655542 1 234667777777777666667766655443
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.52 E-value=5.3e-14 Score=139.42 Aligned_cols=88 Identities=19% Similarity=0.280 Sum_probs=72.4
Q ss_pred cccceeeecccccCCCcccccccccc-cccCccccceEecCCCC-ccccch-hhhccCCccEeeccccccccccc-hhhc
Q 003773 426 ACLRALVIRQWFVPLDDQNFIREIPE-NIGKLIHLKYLNLSELC-IERLPE-TLCELYNLQKLAVRWCTNLRELP-AGIG 501 (796)
Q Consensus 426 ~~L~~L~l~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~-i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp-~~~~ 501 (796)
..|+.|+++ ++.+..+|. .++.+++|++|++++|. ++.+|. .+.++++|++|++++|..+..+| ..|.
T Consensus 31 ~~l~~L~l~--------~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~ 102 (239)
T 2xwt_C 31 PSTQTLKLI--------ETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK 102 (239)
T ss_dssp TTCCEEEEE--------SCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE
T ss_pred CcccEEEEe--------CCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC
Confidence 378999999 677777765 78899999999999997 998886 68899999999999844577776 4688
Q ss_pred cccCCCeeecCCccccccCcc
Q 003773 502 KLMNMRSLMNGQTEKLKYLPI 522 (796)
Q Consensus 502 ~l~~L~~L~l~~~~~~~~~p~ 522 (796)
.+++|++|++++| .++.+|.
T Consensus 103 ~l~~L~~L~l~~n-~l~~lp~ 122 (239)
T 2xwt_C 103 ELPLLKFLGIFNT-GLKMFPD 122 (239)
T ss_dssp CCTTCCEEEEEEE-CCCSCCC
T ss_pred CCCCCCEEeCCCC-CCccccc
Confidence 9999999999998 3444543
No 91
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.51 E-value=9.1e-16 Score=174.80 Aligned_cols=130 Identities=16% Similarity=0.182 Sum_probs=91.1
Q ss_pred CCCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCccccccc--ccccccCccccceEecCCCCccc
Q 003773 394 EFNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIRE--IPENIGKLIHLKYLNLSELCIER 471 (796)
Q Consensus 394 ~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--lp~~~~~l~~L~~L~l~~~~i~~ 471 (796)
.+++|+.|.+.+.. ..+..+..+...+++|+.|++++| ..+.. ++..+.++++|++|++++|.++.
T Consensus 103 ~~~~L~~L~L~~~~-----~~~~~~~~l~~~~~~L~~L~L~~~-------~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~ 170 (594)
T 2p1m_B 103 SYTWLEEIRLKRMV-----VTDDCLELIAKSFKNFKVLVLSSC-------EGFSTDGLAAIAATCRNLKELDLRESDVDD 170 (594)
T ss_dssp HCTTCCEEEEESCB-----CCHHHHHHHHHHCTTCCEEEEESC-------EEEEHHHHHHHHHHCTTCCEEECTTCEEEC
T ss_pred hCCCCCeEEeeCcE-----EcHHHHHHHHHhCCCCcEEeCCCc-------CCCCHHHHHHHHHhCCCCCEEeCcCCccCC
Confidence 35677777665532 334444444457899999999963 23333 45555689999999999998653
Q ss_pred -----cchhhhccCCccEeeccccc-cc--cccchhhccccCCCeeecCCccccccCcccCCCCCCcccCCC
Q 003773 472 -----LPETLCELYNLQKLAVRWCT-NL--RELPAGIGKLMNMRSLMNGQTEKLKYLPIGISRLTSLRTLEK 535 (796)
Q Consensus 472 -----lp~~i~~l~~L~~L~l~~~~-~~--~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 535 (796)
++.....+++|++|++++|. .+ ..++..+..+++|++|++++|..+..+|..+..+++|+.|++
T Consensus 171 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 171 VSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242 (594)
T ss_dssp CCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEEC
T ss_pred cchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccc
Confidence 33334477899999999886 11 123333456799999999999777778877888888888863
No 92
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.50 E-value=1.4e-13 Score=139.05 Aligned_cols=96 Identities=28% Similarity=0.379 Sum_probs=56.7
Q ss_pred ccceeeecccccCCCcccccccccccccCccccceEecCCCCccccch-hhhccCCccEeeccccccccccchh-hcccc
Q 003773 427 CLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPE-TLCELYNLQKLAVRWCTNLRELPAG-IGKLM 504 (796)
Q Consensus 427 ~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~-~~~l~ 504 (796)
.++.++++ ++.+..+|..+. ++|++|++++|.++.+|. .+.++++|++|++++|. +..+|.. +..++
T Consensus 17 ~~~~l~~~--------~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~ 85 (270)
T 2o6q_A 17 NKNSVDCS--------SKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELK 85 (270)
T ss_dssp TTTEEECT--------TSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCT
T ss_pred CCCEEEcc--------CCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCC
Confidence 45566666 555556665443 456777777776666654 46666777777776655 4445443 45666
Q ss_pred CCCeeecCCccccccCcc-cCCCCCCcccCC
Q 003773 505 NMRSLMNGQTEKLKYLPI-GISRLTSLRTLE 534 (796)
Q Consensus 505 ~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~ 534 (796)
+|++|++++|. +..+|. .+..+++|++|+
T Consensus 86 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 86 NLETLWVTDNK-LQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCSSCCEEE
T ss_pred CCCEEECCCCc-CCcCCHhHcccccCCCEEE
Confidence 77777776663 334433 345566666664
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.49 E-value=1.7e-13 Score=141.66 Aligned_cols=205 Identities=16% Similarity=0.079 Sum_probs=138.3
Q ss_pred cCcccceeeecccccCCCcccccccccccc--cCccccceEecCCCCcccc-c----hhhhccCCccEeecccccccccc
Q 003773 424 KVACLRALVIRQWFVPLDDQNFIREIPENI--GKLIHLKYLNLSELCIERL-P----ETLCELYNLQKLAVRWCTNLREL 496 (796)
Q Consensus 424 ~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~--~~l~~L~~L~l~~~~i~~l-p----~~i~~l~~L~~L~l~~~~~~~~l 496 (796)
.+++|+.|++++ +......|..+ +.+++|++|++++|.+... | ..+..+++|++|++++|......
T Consensus 89 ~~~~L~~L~l~~-------n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 161 (310)
T 4glp_A 89 AYSRLKELTLED-------LKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFS 161 (310)
T ss_dssp HHSCCCEEEEES-------CCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCC
T ss_pred ccCceeEEEeeC-------CEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhh
Confidence 456699999994 33344567776 8899999999999998742 2 34567999999999998854555
Q ss_pred chhhccccCCCeeecCCcccccc--Cc--ccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCC
Q 003773 497 PAGIGKLMNMRSLMNGQTEKLKY--LP--IGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSH 572 (796)
Q Consensus 497 p~~~~~l~~L~~L~l~~~~~~~~--~p--~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~ 572 (796)
|..++.+++|++|++++|..... ++ ..++.+++|++|++ ..+.. ..
T Consensus 162 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L--s~N~l----------------------------~~ 211 (310)
T 4glp_A 162 CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLAL--RNTGM----------------------------ET 211 (310)
T ss_dssp TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBC--CSSCC----------------------------CC
T ss_pred HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEEC--CCCCC----------------------------Cc
Confidence 57788999999999999954321 22 22356777777752 22211 11
Q ss_pred hhhhhhccccccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEE
Q 003773 573 VDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELK 652 (796)
Q Consensus 573 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~ 652 (796)
.+......+..+++|+.|++++|.+.+..... ...+..+++|++|++++|.+..+|..+. ++|++|+
T Consensus 212 l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-----------~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~ 278 (310)
T 4glp_A 212 PTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-----------APRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLD 278 (310)
T ss_dssp HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-----------CSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEE
T ss_pred hHHHHHHHHhcCCCCCEEECCCCCCCccchhh-----------HHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEE
Confidence 11111112345677888888877764431110 0122234689999999998888888764 8999999
Q ss_pred EcCCCCCCCCCccccc-cccceeccccc
Q 003773 653 LFSCVNCEHLPPLGKL-LLEKLTLYNLI 679 (796)
Q Consensus 653 L~~~~~~~~lp~l~~l-~L~~L~l~~~~ 679 (796)
|++|. +..+|.+..+ +|+.|+++++.
T Consensus 279 Ls~N~-l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 279 LSSNR-LNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCSCC-CCSCCCTTSCCCCSCEECSSTT
T ss_pred CCCCc-CCCCchhhhCCCccEEECcCCC
Confidence 99994 5556667777 89999988765
No 94
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.48 E-value=8e-14 Score=140.98 Aligned_cols=176 Identities=19% Similarity=0.194 Sum_probs=88.6
Q ss_pred ccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhccccCCCeeecCCccccccCcc-cCCCCCCcc
Q 003773 453 IGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTEKLKYLPI-GISRLTSLR 531 (796)
Q Consensus 453 ~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~ 531 (796)
...+++|+.|++++|.++.++ .+..+++|++|++++|. +..++ .+..+++|++|++++|. +..+|. .++.+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCC
Confidence 334556666666666655554 25556666666666554 33333 45566666666666652 333332 244555555
Q ss_pred cCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhccccccccccceEEEeccccCCCCCcCccCchh
Q 003773 532 TLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEK 611 (796)
Q Consensus 532 ~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 611 (796)
+|++ ..+.... .....+..+++|+.|++++|.+.+..
T Consensus 113 ~L~L--~~n~l~~-------------------------------~~~~~~~~l~~L~~L~L~~n~l~~~~---------- 149 (272)
T 3rfs_A 113 ELVL--VENQLQS-------------------------------LPDGVFDKLTNLTYLNLAHNQLQSLP---------- 149 (272)
T ss_dssp EEEC--TTSCCCC-------------------------------CCTTTTTTCTTCCEEECCSSCCCCCC----------
T ss_pred EEEC--CCCcCCc-------------------------------cCHHHhccCCCCCEEECCCCccCccC----------
Confidence 5531 1111100 00001223334444444444322111
Q ss_pred HHHHHhhCCCCCCCcEEEEeecCCCCCCch-hhhccCCcEEEEcCCCCCCCCCc-cccc-cccceeccccc
Q 003773 612 DKQLLEALQPPLNVEELWILFYGGNIFPKW-LTLLTNLRELKLFSCVNCEHLPP-LGKL-LLEKLTLYNLI 679 (796)
Q Consensus 612 ~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~L~~~~~~~~lp~-l~~l-~L~~L~l~~~~ 679 (796)
...+..+++|+.|++++|....+|.. +..+++|++|++++|...+..|. ++.+ +|+.|++++|.
T Consensus 150 ----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 150 ----KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp ----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ----HHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 01123445666666666666655443 45778888888888754433333 5666 77778777654
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.47 E-value=1.4e-13 Score=142.24 Aligned_cols=203 Identities=16% Similarity=0.141 Sum_probs=116.5
Q ss_pred ccccceEecCCCCcc-ccchhh--hccCCccEeeccccccccccc----hhhccccCCCeeecCCccccccCcccCCCCC
Q 003773 456 LIHLKYLNLSELCIE-RLPETL--CELYNLQKLAVRWCTNLRELP----AGIGKLMNMRSLMNGQTEKLKYLPIGISRLT 528 (796)
Q Consensus 456 l~~L~~L~l~~~~i~-~lp~~i--~~l~~L~~L~l~~~~~~~~lp----~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~ 528 (796)
+++|++|++++|.+. ..|..+ .++++|++|++++|......| ..+..+++|++|++++|......|..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 456888888888866 455555 778888888888777444333 2345677788888877744333344555666
Q ss_pred CcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhccccccccccceEEEeccccCCCCCcCccC
Q 003773 529 SLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRK 608 (796)
Q Consensus 529 ~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 608 (796)
+|++|++ ++|.+.+
T Consensus 170 ~L~~L~L---------------------------------------------------------s~N~l~~--------- 183 (310)
T 4glp_A 170 ALTSLDL---------------------------------------------------------SDNPGLG--------- 183 (310)
T ss_dssp TCCEEEC---------------------------------------------------------CSCTTCH---------
T ss_pred CCCEEEC---------------------------------------------------------CCCCCcc---------
Confidence 6666642 2211100
Q ss_pred chhHHHHHh--hCCCCCCCcEEEEeecCCCCCCch----hhhccCCcEEEEcCCCCCCCCCc-cccccccceeccccccc
Q 003773 609 NEKDKQLLE--ALQPPLNVEELWILFYGGNIFPKW----LTLLTNLRELKLFSCVNCEHLPP-LGKLLLEKLTLYNLISV 681 (796)
Q Consensus 609 ~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~p~~----~~~l~~L~~L~L~~~~~~~~lp~-l~~l~L~~L~l~~~~~l 681 (796)
...+.. .+..+++|++|++++|....+|.. +..+++|++|+|++|......|. ++.
T Consensus 184 ---~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~-------------- 246 (310)
T 4glp_A 184 ---ERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR-------------- 246 (310)
T ss_dssp ---HHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS--------------
T ss_pred ---chhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHh--------------
Confidence 000000 011223444444444444333331 34667788888877753333232 111
Q ss_pred eEeCccccCCCCCCccCCCCCCcccCCCccceeeccccccccccccccccccccCCCCccceeeccCCCCCCCCCcCCCC
Q 003773 682 KRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLPDHLLQ 761 (796)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~ 761 (796)
...+++|++|+++++ .++.+ |..+ +++|++|++++| .+..+|. +..
T Consensus 247 -----------------------~~~~~~L~~L~Ls~N-~l~~l------p~~~--~~~L~~L~Ls~N-~l~~~~~-~~~ 292 (310)
T 4glp_A 247 -----------------------CMWSSALNSLNLSFA-GLEQV------PKGL--PAKLRVLDLSSN-RLNRAPQ-PDE 292 (310)
T ss_dssp -----------------------CCCCTTCCCEECCSS-CCCSC------CSCC--CSCCSCEECCSC-CCCSCCC-TTS
T ss_pred -----------------------ccCcCcCCEEECCCC-CCCch------hhhh--cCCCCEEECCCC-cCCCCch-hhh
Confidence 113467888877665 44422 4443 378999999998 5666665 567
Q ss_pred CCCccEEEEcCCCc
Q 003773 762 TTTLQELSIRGCPI 775 (796)
Q Consensus 762 l~~L~~L~l~~~~~ 775 (796)
+++|+.|++++|+.
T Consensus 293 l~~L~~L~L~~N~l 306 (310)
T 4glp_A 293 LPEVDNLTLDGNPF 306 (310)
T ss_dssp CCCCSCEECSSTTT
T ss_pred CCCccEEECcCCCC
Confidence 88999999999874
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.47 E-value=2.1e-14 Score=150.71 Aligned_cols=207 Identities=16% Similarity=0.114 Sum_probs=140.5
Q ss_pred hhcC--cccceeeecccccCCCcccccccccccccCccccceEecCCCCccc--cchhhhccCCccEeeccccccccccc
Q 003773 422 FSKV--ACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIER--LPETLCELYNLQKLAVRWCTNLRELP 497 (796)
Q Consensus 422 ~~~~--~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~~~~lp 497 (796)
+..+ +.++.|+++ ++.+...+..+..+++|++|++++|.+.. +|..+.++++|++|++++|......|
T Consensus 64 ~~~~~~~~l~~L~l~--------~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~ 135 (336)
T 2ast_B 64 TGRLLSQGVIAFRCP--------RSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV 135 (336)
T ss_dssp HHHHHHTTCSEEECT--------TCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHH
T ss_pred HHhhhhccceEEEcC--------CccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHH
Confidence 4455 789999998 66666666667789999999999998773 78888999999999999987555677
Q ss_pred hhhccccCCCeeecCCccccc--cCcccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhh
Q 003773 498 AGIGKLMNMRSLMNGQTEKLK--YLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDE 575 (796)
Q Consensus 498 ~~~~~l~~L~~L~l~~~~~~~--~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~ 575 (796)
..+..+++|++|++++|..++ .+|..++.+++|++|++. .+ ..+.. .
T Consensus 136 ~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~--~~---------------------------~~l~~--~ 184 (336)
T 2ast_B 136 NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS--WC---------------------------FDFTE--K 184 (336)
T ss_dssp HHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECC--CC---------------------------TTCCH--H
T ss_pred HHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCC--CC---------------------------CCcCh--H
Confidence 788889999999999985454 255556666667666521 11 00000 0
Q ss_pred hhhccccccc-cccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCC-C-CCCchhhhccCCcEEE
Q 003773 576 AERLQLYNKK-NLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGG-N-IFPKWLTLLTNLRELK 652 (796)
Q Consensus 576 ~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~-~~p~~~~~l~~L~~L~ 652 (796)
.....+..++ +|+.|++++|... .....+...+..+++|+.|++++|.. . ..+..+..+++|++|+
T Consensus 185 ~~~~~~~~l~~~L~~L~l~~~~~~-----------~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 253 (336)
T 2ast_B 185 HVQVAVAHVSETITQLNLSGYRKN-----------LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS 253 (336)
T ss_dssp HHHHHHHHSCTTCCEEECCSCGGG-----------SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred HHHHHHHhcccCCCEEEeCCCccc-----------CCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEee
Confidence 0112244566 7777777766310 01234444555677888888888873 2 4466777888999999
Q ss_pred EcCCCCCC--CCCccccc-cccceecccc
Q 003773 653 LFSCVNCE--HLPPLGKL-LLEKLTLYNL 678 (796)
Q Consensus 653 L~~~~~~~--~lp~l~~l-~L~~L~l~~~ 678 (796)
+++|.... .+..++.+ +|+.|++++|
T Consensus 254 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 254 LSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 98886332 12235666 8888888877
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.46 E-value=5.4e-13 Score=140.27 Aligned_cols=71 Identities=17% Similarity=0.243 Sum_probs=57.6
Q ss_pred ceEecCCCCccccchhhhccCCccEeeccccccccccch-hhccccCCCeeecCCccccccCccc-CCCCCCcccC
Q 003773 460 KYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPA-GIGKLMNMRSLMNGQTEKLKYLPIG-ISRLTSLRTL 533 (796)
Q Consensus 460 ~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L 533 (796)
+.++-++++++++|..+ ..++++|+|++|. +..+|. .|.++++|++|++++|...+.+|.. +.++++|+.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~ 84 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI 84 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh
Confidence 67788888999999877 4689999999976 778886 5899999999999999766666653 5677776654
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.45 E-value=8.1e-15 Score=156.83 Aligned_cols=109 Identities=18% Similarity=0.171 Sum_probs=56.4
Q ss_pred hhcCcccceeeecccccCCCccccccccccc-------ccCccccceEecCCCCccc-----cchhhhccCCccEeeccc
Q 003773 422 FSKVACLRALVIRQWFVPLDDQNFIREIPEN-------IGKLIHLKYLNLSELCIER-----LPETLCELYNLQKLAVRW 489 (796)
Q Consensus 422 ~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~-------~~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~ 489 (796)
+..+++|++|+|+++.+ +.....+|.. +..+++|++|+|++|.+.. +|..+.++++|++|+|++
T Consensus 56 l~~~~~L~~L~Ls~~~~----~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 131 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFT----GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHN 131 (386)
T ss_dssp TTTCTTCCEEECCSCCT----TSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHhCCCccEEeCccccc----CccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcC
Confidence 45666666666664321 1111122322 3566666777776666654 566666666677777766
Q ss_pred cccccc----cchhhccc---------cCCCeeecCCcccc-ccCc---ccCCCCCCcccCC
Q 003773 490 CTNLRE----LPAGIGKL---------MNMRSLMNGQTEKL-KYLP---IGISRLTSLRTLE 534 (796)
Q Consensus 490 ~~~~~~----lp~~~~~l---------~~L~~L~l~~~~~~-~~~p---~~i~~l~~L~~L~ 534 (796)
|..... ++..+..+ ++|++|++++|... ..+| ..+..+++|++|+
T Consensus 132 n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 193 (386)
T 2ca6_A 132 NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK 193 (386)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEE
T ss_pred CCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEE
Confidence 653211 22223333 66666666666322 1222 2344455555554
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.43 E-value=3.5e-14 Score=151.86 Aligned_cols=240 Identities=16% Similarity=0.081 Sum_probs=140.0
Q ss_pred hhhcCcccceeeecccccCCCccccccc-----ccccccCccccceEecCCCCcc----ccchhh-------hccCCccE
Q 003773 421 LFSKVACLRALVIRQWFVPLDDQNFIRE-----IPENIGKLIHLKYLNLSELCIE----RLPETL-------CELYNLQK 484 (796)
Q Consensus 421 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~i~----~lp~~i-------~~l~~L~~ 484 (796)
.+..+++|+.|+|++ +.+.. ++..+..+++|++|+|++|.+. .+|..+ .++++|++
T Consensus 27 ~l~~~~~L~~L~L~~--------n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~ 98 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSG--------NTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 98 (386)
T ss_dssp HHHHCSCCCEEECTT--------SEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred HHhcCCCccEEECCC--------CCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccE
Confidence 356677788888884 33322 3444667888888888877544 334433 67788888
Q ss_pred eecccccccc----ccchhhccccCCCeeecCCcccccc----CcccCCCC---------CCcccCCCeeeCCccC-CCC
Q 003773 485 LAVRWCTNLR----ELPAGIGKLMNMRSLMNGQTEKLKY----LPIGISRL---------TSLRTLEKFVVGGGVD-GGS 546 (796)
Q Consensus 485 L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~~----~p~~i~~l---------~~L~~L~~~~~~~~~~-~~~ 546 (796)
|+|++|.... .+|..+..+++|++|++++|..... ++..+..+ ++|++|++ ..+... ...
T Consensus 99 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L--~~n~l~~~~~ 176 (386)
T 2ca6_A 99 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC--GRNRLENGSM 176 (386)
T ss_dssp EECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC--CSSCCTGGGH
T ss_pred EECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC--CCCCCCcHHH
Confidence 8888876443 3666777888888888888743222 22223333 67777753 233221 111
Q ss_pred cccccccccCCCCCcceecCCCCCC-ChhhhhhccccccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCC
Q 003773 547 TCRLESLKNLQLLRECRVEGLSNVS-HVDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNV 625 (796)
Q Consensus 547 ~~~l~~l~~L~~L~~l~l~~l~~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L 625 (796)
+.....+..++.|+.+.+.+..-.. .........+..+++|+.|++++|.+.+ .....++..+..+++|
T Consensus 177 ~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~----------~g~~~l~~~l~~~~~L 246 (386)
T 2ca6_A 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH----------LGSSALAIALKSWPNL 246 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH----------HHHHHHHHHGGGCTTC
T ss_pred HHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc----------HHHHHHHHHHccCCCc
Confidence 1111234455566666655532100 0111222256677888888888776421 1124556667777788
Q ss_pred cEEEEeecCCCC-----CCchhhh--ccCCcEEEEcCCCCCC----CCCc-c-ccc-cccceecccccc
Q 003773 626 EELWILFYGGNI-----FPKWLTL--LTNLRELKLFSCVNCE----HLPP-L-GKL-LLEKLTLYNLIS 680 (796)
Q Consensus 626 ~~L~l~~~~~~~-----~p~~~~~--l~~L~~L~L~~~~~~~----~lp~-l-~~l-~L~~L~l~~~~~ 680 (796)
+.|++++|.+.. +|.++.. +++|++|+|++|.... .+|. + ..+ +|+.|++++|..
T Consensus 247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 888888877654 2444433 7788888888885443 2555 3 445 788888877653
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.42 E-value=5.7e-13 Score=135.89 Aligned_cols=79 Identities=18% Similarity=0.244 Sum_probs=42.3
Q ss_pred cCcccceeeecccccCCCcccccccccccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhccc
Q 003773 424 KVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGKL 503 (796)
Q Consensus 424 ~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l 503 (796)
.+++|+.|+++ ++.+..++. +..+++|++|++++|.++.++. +.++++|++|++++|. +..+|. +..+
T Consensus 44 ~l~~L~~L~l~--------~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l 111 (291)
T 1h6t_A 44 ELNSIDQIIAN--------NSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDL 111 (291)
T ss_dssp HHHTCCEEECT--------TSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTC
T ss_pred hcCcccEEEcc--------CCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccC
Confidence 34555555555 334444432 5555556666666655555554 5555566666665554 333333 5555
Q ss_pred cCCCeeecCCc
Q 003773 504 MNMRSLMNGQT 514 (796)
Q Consensus 504 ~~L~~L~l~~~ 514 (796)
++|++|++++|
T Consensus 112 ~~L~~L~L~~n 122 (291)
T 1h6t_A 112 KKLKSLSLEHN 122 (291)
T ss_dssp TTCCEEECTTS
T ss_pred CCCCEEECCCC
Confidence 55555555555
No 101
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.42 E-value=6.6e-12 Score=134.44 Aligned_cols=294 Identities=11% Similarity=-0.006 Sum_probs=174.2
Q ss_pred ccCcccccHHHHHHHhcccCC---CCCcEEEEEEcCCCCcHHHHHHHHHcCccccc---c-CCeEEEEEeCCcCCHHHHH
Q 003773 13 LKLQIEGLDDDNTLALASSEQ---QKGLRIISLFGLGGIGKTTLAQLAFNNEGVKR---K-FDIVIWVCVSDAFEEIRIA 85 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~-f~~~~wv~~~~~~~~~~~~ 85 (796)
.++.|+||+++++.+...+.. ....+.+.|+|++|+|||++|+++++...... . --.++|+++....+...+.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 457899999999977655421 34557899999999999999999998632110 1 1247788888888888999
Q ss_pred HHHHHHhccCCCCC-ccHHHHHHHHHHHh--CCceEEEEEeCCCCCCcc--ChhhHhhhcc---CC--CCCcEEEEEecc
Q 003773 86 KAILEVLDKSASSL-GEFQSLMQQTQESI--RGKKFFLVLDDVWDGDFK--KWDPFFSCLK---NG--HHESKILITTRD 155 (796)
Q Consensus 86 ~~i~~~l~~~~~~~-~~~~~~~~~~~~~l--~~~~~LlvlDd~~~~~~~--~~~~l~~~~~---~~--~~gs~iiiTsr~ 155 (796)
..+++.++...+.. ....+....+.+.+ .+++.+||+|+++..... ..+.+...+. .. ..+..+|.||+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 99999987643322 23455566666666 456899999999653221 1222322222 11 345678888876
Q ss_pred hhhhhcc-----Cc--cceEEccCCChHhHHHHHHHHhhC--CCCCCCCcchhHHHHHHHHhcC---CCchh-HHHHHHH
Q 003773 156 RSVALQM-----GS--IDIISVKELGEEECWSLFKQVAFL--GRSFEDCEKLEPIGRKIACKCK---GLPLA-AKVIGNL 222 (796)
Q Consensus 156 ~~~~~~~-----~~--~~~~~l~~l~~~e~~~lf~~~~~~--~~~~~~~~~~~~~~~~i~~~~~---g~PLa-l~~~~~~ 222 (796)
......+ .. ...+.+.+++.++..+++...+.. ..... ..+..+.+++.++ |.|.. +..+...
T Consensus 177 ~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~G~~r~~~~~l~~a 252 (387)
T 2v1u_A 177 LGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVL----DPDVVPLCAALAAREHGDARRALDLLRVA 252 (387)
T ss_dssp STTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTB----CSSHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCC----CHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 5321111 11 147889999999999999887531 11111 1334667778887 99943 3333222
Q ss_pred Hh-----c--CCCHHHHHHHHhhhhccccccCCCccchhhhhccCCCChhhhhhHHhhhc-CCCCCceecHHHHHHHHHH
Q 003773 223 LR-----S--KRTVSEWQRILDSEMWKVEEIGKGLLPPLLLSYNDLPSSSMVKRCFSYCS-VFPKDYNIRKEELITLWMA 294 (796)
Q Consensus 223 l~-----~--~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~k~~fl~~~-~fp~~~~i~~~~Li~~wia 294 (796)
.. + .-+.+.+..+++.... ..+..++..++. ..+..+..++ .+.....+...++.+....
T Consensus 253 ~~~a~~~~~~~i~~~~v~~a~~~~~~----------~~~~~~~~~l~~--~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
T 2v1u_A 253 GEIAERRREERVRREHVYSARAEIER----------DRVSEVVRTLPL--HAKLVLLSIMMLEDGGRPASTGEIYERYKE 320 (387)
T ss_dssp HHHHHHTTCSCBCHHHHHHHHHHHHH----------HHHHHHHHSSCH--HHHHHHHHHHHHSSSSCCEEHHHHHHHHHH
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHhh----------chHHHHHHcCCH--HHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 21 1 1245566655544211 134456677876 5565555454 3322224445544333222
Q ss_pred ----cCCcCCCCChhHHHHHHHHHHHHHhcccccccc
Q 003773 295 ----QCYLNSEEDEEMEIIGEEYFNILATRSFFQEFV 327 (796)
Q Consensus 295 ----~g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 327 (796)
.| .... .......+++.|...+++....
T Consensus 321 ~~~~~~-~~~~----~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 321 LTSTLG-LEHV----TLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHHTT-CCCC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhcC-CCCC----CHHHHHHHHHHHHhCCCeEEEe
Confidence 12 1111 1345677899999999998754
No 102
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.41 E-value=1.2e-11 Score=132.28 Aligned_cols=293 Identities=13% Similarity=0.018 Sum_probs=174.5
Q ss_pred ccCcccccHHHHHHHhcccC---CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc----c--CCeEEEEEeCCcC-CHH
Q 003773 13 LKLQIEGLDDDNTLALASSE---QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKR----K--FDIVIWVCVSDAF-EEI 82 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~----~--f~~~~wv~~~~~~-~~~ 82 (796)
.+.+|+||+++++.+...+. .....+.+.|+|++|+|||++|+++++...... . ...++|+++.... +..
T Consensus 18 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 18 VFKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp HCSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 35789999999995553321 234456899999999999999999998632211 1 3457888877766 788
Q ss_pred HHHHHHHHHhccCCCC--CccHHHHHHHHHHHhCCceEEEEEeCCCCCCccC-hhhHhhhccCCCCCcEEEEEecchhhh
Q 003773 83 RIAKAILEVLDKSASS--LGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKK-WDPFFSCLKNGHHESKILITTRDRSVA 159 (796)
Q Consensus 83 ~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~-~~~l~~~~~~~~~gs~iiiTsr~~~~~ 159 (796)
.+...+++.+.+.... .....+....+.+.+..++.+||+||++...... .+.+...+.....+..+|+||+.....
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchH
Confidence 8888888887433221 2234566677777787776699999996532221 222022222222677899999875321
Q ss_pred hcc------CccceEEccCCChHhHHHHHHHHhhCC-CCCCCCcchhHHHHHHHHhcC---CCch-hHHHHHHHH--hc-
Q 003773 160 LQM------GSIDIISVKELGEEECWSLFKQVAFLG-RSFEDCEKLEPIGRKIACKCK---GLPL-AAKVIGNLL--RS- 225 (796)
Q Consensus 160 ~~~------~~~~~~~l~~l~~~e~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~~~---g~PL-al~~~~~~l--~~- 225 (796)
..+ .....+.+++++.++..++|...+... .... -..+..+.+++.++ |.|. |+..+.... ..
T Consensus 178 ~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~ 254 (384)
T 2qby_B 178 DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGT---YDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASG 254 (384)
T ss_dssp TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTS---CCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTS
T ss_pred hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCC---cCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcC
Confidence 111 112389999999999999999875311 1111 11345667778887 8887 444433332 21
Q ss_pred --CCCHHHHHHHHhhhhccccccCCCccchhhhhccCCCChhhhhhHHhhhcCCCCC-ceecHHHHHHHHHHcCC-cCCC
Q 003773 226 --KRTVSEWQRILDSEMWKVEEIGKGLLPPLLLSYNDLPSSSMVKRCFSYCSVFPKD-YNIRKEELITLWMAQCY-LNSE 301 (796)
Q Consensus 226 --~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~k~~fl~~~~fp~~-~~i~~~~Li~~wia~g~-i~~~ 301 (796)
.-+.+.+..+++.... ..+..++..|+. ..+..+..++. ... ..+. + ...-+++.+ ....
T Consensus 255 ~~~i~~~~v~~~~~~~~~----------~~~~~~~~~l~~--~~~~~l~al~~-~~~~~~~~-~--~~~~~~~~~g~~~~ 318 (384)
T 2qby_B 255 GGIIRKEHVDKAIVDYEQ----------ERLIEAVKALPF--HYKLALRSLIE-SEDVMSAH-K--MYTDLCNKFKQKPL 318 (384)
T ss_dssp SSCCCHHHHHHHHHHHHH----------HHHHHHHHSSCH--HHHHHHHHHHT-CCBHHHHH-H--HHHHHHHHTTCCCC
T ss_pred CCccCHHHHHHHHHHHhc----------chHHHHHHcCCH--HHHHHHHHHHH-hcccChHH-H--HHHHHHHHcCCCCC
Confidence 2256666666654321 234556677876 66666655655 211 1111 0 111122211 1111
Q ss_pred CChhHHHHHHHHHHHHHhccccccccc
Q 003773 302 EDEEMEIIGEEYFNILATRSFFQEFVK 328 (796)
Q Consensus 302 ~~~~~~~~~~~~l~~L~~~~ll~~~~~ 328 (796)
......+++..|...+++.....
T Consensus 319 ----~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 319 ----SYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp ----CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred ----CHHHHHHHHHHHHhCCCEEEEec
Confidence 12346678899999999987543
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.40 E-value=5.1e-14 Score=148.98 Aligned_cols=92 Identities=15% Similarity=0.121 Sum_probs=61.2
Q ss_pred hhHHHhhhcCcccceeeecccccCCCccccccccc-----ccccCcc-ccceEecCCCCcccc-chhhhcc-----CCcc
Q 003773 416 SILVELFSKVACLRALVIRQWFVPLDDQNFIREIP-----ENIGKLI-HLKYLNLSELCIERL-PETLCEL-----YNLQ 483 (796)
Q Consensus 416 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp-----~~~~~l~-~L~~L~l~~~~i~~l-p~~i~~l-----~~L~ 483 (796)
...+.++...++|+.|+++ ++.+...+ ..+..++ +|++|++++|.++.. +..+..+ ++|+
T Consensus 12 ~~~~~~~~~~~~L~~L~Ls--------~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 12 NPVEEFTSIPHGVTSLDLS--------LNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp CHHHHHHTSCTTCCEEECT--------TSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred HHHHHHHhCCCCceEEEcc--------CCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 3445555666668888888 44455543 5567777 788888888887754 4455554 8888
Q ss_pred Eeeccccccccccchhh----ccc-cCCCeeecCCcc
Q 003773 484 KLAVRWCTNLRELPAGI----GKL-MNMRSLMNGQTE 515 (796)
Q Consensus 484 ~L~l~~~~~~~~lp~~~----~~l-~~L~~L~l~~~~ 515 (796)
+|+|++|......+..+ ..+ ++|++|++++|.
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc
Confidence 88888877433444433 333 788888888884
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.38 E-value=1.2e-12 Score=146.73 Aligned_cols=169 Identities=20% Similarity=0.210 Sum_probs=90.9
Q ss_pred cCcccceeeecccccCCCcccccccccccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhccc
Q 003773 424 KVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGKL 503 (796)
Q Consensus 424 ~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l 503 (796)
.+++|+.|+++ ++.+..+| .++.+++|++|+|++|.+..+|. +.++++|+.|+|++|. +..+| .+..+
T Consensus 41 ~L~~L~~L~l~--------~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l 108 (605)
T 1m9s_A 41 ELNSIDQIIAN--------NSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDL 108 (605)
T ss_dssp HHTTCCCCBCT--------TCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTC
T ss_pred cCCCCCEEECc--------CCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccC
Confidence 44555555555 34444443 35555556666666555555554 5555566666665554 33333 35555
Q ss_pred cCCCeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhccccc
Q 003773 504 MNMRSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYN 583 (796)
Q Consensus 504 ~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~ 583 (796)
++|++|++++| .+..+| .++.+++|+.|+ +.+..- .. + ..+..
T Consensus 109 ~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~-----------------------------Ls~N~l-~~---l--~~l~~ 151 (605)
T 1m9s_A 109 KKLKSLSLEHN-GISDIN-GLVHLPQLESLY-----------------------------LGNNKI-TD---I--TVLSR 151 (605)
T ss_dssp TTCCEEECTTS-CCCCCG-GGGGCTTCSEEE-----------------------------CCSSCC-CC---C--GGGGS
T ss_pred CCCCEEEecCC-CCCCCc-cccCCCccCEEE-----------------------------CCCCcc-CC---c--hhhcc
Confidence 55555555555 233322 244444444443 222100 00 0 12556
Q ss_pred cccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCC
Q 003773 584 KKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVN 658 (796)
Q Consensus 584 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~ 658 (796)
+++|+.|+++.|.+.+. .. +..+++|+.|++++|.+..+| .+..+++|+.|+|++|..
T Consensus 152 l~~L~~L~Ls~N~l~~~---------------~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 152 LTKLDTLSLEDNQISDI---------------VP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp CTTCSEEECCSSCCCCC---------------GG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred cCCCCEEECcCCcCCCc---------------hh-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcC
Confidence 66777777777764321 11 456677777777777776654 456777777777777753
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.38 E-value=1.4e-12 Score=132.88 Aligned_cols=77 Identities=21% Similarity=0.257 Sum_probs=57.3
Q ss_pred ccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhccccCCCeeecCCccccccCcccCCCCCCccc
Q 003773 453 IGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTEKLKYLPIGISRLTSLRT 532 (796)
Q Consensus 453 ~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 532 (796)
+..+++|++|++++|.+..+|. +..+++|++|++++|. +..++. +..+++|++|++++| .+..+|. ++.+++|+.
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKS 116 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCE
T ss_pred hhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCE
Confidence 4578889999999999888864 8889999999999876 566665 888899999999888 3444332 445555554
Q ss_pred CC
Q 003773 533 LE 534 (796)
Q Consensus 533 L~ 534 (796)
|+
T Consensus 117 L~ 118 (291)
T 1h6t_A 117 LS 118 (291)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 106
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.38 E-value=5.4e-11 Score=127.35 Aligned_cols=295 Identities=14% Similarity=0.037 Sum_probs=177.7
Q ss_pred ccCcccccHHHHHHHhcccCC---CCC--cEEEEEEcCCCCcHHHHHHHHHcCcccccc-CCeEEEEEeCCcCCHHHHHH
Q 003773 13 LKLQIEGLDDDNTLALASSEQ---QKG--LRIISLFGLGGIGKTTLAQLAFNNEGVKRK-FDIVIWVCVSDAFEEIRIAK 86 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~~~~---~~~--~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~ 86 (796)
.++.++||+++++.+...+.. +.. .+.+.|+|++|+||||+|+.+++.. ... -..++|+++....+...+..
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~i~~~~~~~~~~~~~ 92 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY--KDKTTARFVYINGFIYRNFTAIIG 92 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH--TTSCCCEEEEEETTTCCSHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH--hhhcCeeEEEEeCccCCCHHHHHH
Confidence 447899999999966554321 122 3489999999999999999998763 222 13477888888778888999
Q ss_pred HHHHHhccCCCC-CccHHHHHHHHHHHh--CCceEEEEEeCCCCCCccChhhHhhhccCCC----CCcEEEEEecchhhh
Q 003773 87 AILEVLDKSASS-LGEFQSLMQQTQESI--RGKKFFLVLDDVWDGDFKKWDPFFSCLKNGH----HESKILITTRDRSVA 159 (796)
Q Consensus 87 ~i~~~l~~~~~~-~~~~~~~~~~~~~~l--~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~----~gs~iiiTsr~~~~~ 159 (796)
.++..++..... .....+....+.+.+ .+++.+||+|+++..+......+...+.... .+..||++|+.....
T Consensus 93 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 93 EIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 999888654322 223445555555544 3668999999997654444455555443321 356788888765433
Q ss_pred hccC-------ccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhc---------CCCchhHHHHHHHH
Q 003773 160 LQMG-------SIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKC---------KGLPLAAKVIGNLL 223 (796)
Q Consensus 160 ~~~~-------~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~PLal~~~~~~l 223 (796)
..+. ....+.+.+++.++..+++...+..... ...-..+..+.+++.+ +|.|..+..+....
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA--EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC--TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 2221 1136999999999999999887532100 0111245677888888 78875544443322
Q ss_pred h------cC--CCHHHHHHHHhhhhccccccCCCccchhhhhccCCCChhhhhhHHhhhcCCC---CCceecHHHHHHHH
Q 003773 224 R------SK--RTVSEWQRILDSEMWKVEEIGKGLLPPLLLSYNDLPSSSMVKRCFSYCSVFP---KDYNIRKEELITLW 292 (796)
Q Consensus 224 ~------~~--~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~k~~fl~~~~fp---~~~~i~~~~Li~~w 292 (796)
. +. -+.+....+..... ...+.-.+..|+. +.+.++..++.+. .+..+....+...+
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~--~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~ 318 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPL--HEKLFLLAIVRSLKISHTPYITFGDAEESY 318 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCH--HHHHHHHHHHHHHHHHCSSCEEHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCH--HHHHHHHHHHHHHhhccCCCccHHHHHHHH
Confidence 1 11 12222222222111 1223344566776 6777766666543 22245556665544
Q ss_pred HH----cCCcCCCCChhHHHHHHHHHHHHHhccccccccc
Q 003773 293 MA----QCYLNSEEDEEMEIIGEEYFNILATRSFFQEFVK 328 (796)
Q Consensus 293 ia----~g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~ 328 (796)
.. .|. ... + ......+++.|.+.+++.....
T Consensus 319 ~~~~~~~~~-~~~---~-~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 319 KIVCEEYGE-RPR---V-HSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HHHHHHTTC-CCC---C-HHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHHHHcCC-CCC---C-HHHHHHHHHHHHhCCCeEEeee
Confidence 33 121 111 1 2345678999999999987654
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.35 E-value=3.7e-12 Score=140.90 Aligned_cols=109 Identities=14% Similarity=0.068 Sum_probs=56.2
Q ss_pred CCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCCCCCccccccccceeccccccceEeCccccCCCCCCccCCCCCC
Q 003773 624 NVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCEHLPPLGKLLLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSS 703 (796)
Q Consensus 624 ~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~l~~l~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 703 (796)
+|+.|++++|.+..+|. .+++|++|+|++|. +..+|.+. -+|+.|++++|. +..++. +.. .
T Consensus 141 ~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~l~-~~L~~L~Ls~N~-L~~lp~-~~~--~---------- 201 (571)
T 3cvr_A 141 LLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPELP-ESLEALDVSTNL-LESLPA-VPV--R---------- 201 (571)
T ss_dssp TCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCCCC-TTCCEEECCSSC-CSSCCC-CC--------------
T ss_pred cccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcchhh-CCCCEEECcCCC-CCchhh-HHH--h----------
Confidence 34444444555555555 46788888888884 44466532 267777777654 223322 110 0
Q ss_pred cccCCCccceeeccccccccccccccccccccCCCCccceeeccCCCCCCCCCcC
Q 003773 704 SVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLPDH 758 (796)
Q Consensus 704 ~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~ 758 (796)
.....+.|+.|+++++ .++.+ |..+..+++|+.|+|++|+....+|..
T Consensus 202 L~~~~~~L~~L~Ls~N-~l~~l------p~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 202 NHHSEETEIFFRCREN-RITHI------PENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp ------CCEEEECCSS-CCCCC------CGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred hhcccccceEEecCCC-cceec------CHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 0012233466766654 33322 455556777777777777554444443
No 108
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.35 E-value=8.5e-12 Score=124.37 Aligned_cols=98 Identities=18% Similarity=0.190 Sum_probs=72.4
Q ss_pred cccceeeecccccCCCcccccccccccccCccccceEecCCCCccccch-hhhccCCccEeeccccccccccchhhcccc
Q 003773 426 ACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPE-TLCELYNLQKLAVRWCTNLRELPAGIGKLM 504 (796)
Q Consensus 426 ~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 504 (796)
...+.++++ ++.+..+|..+. ++|++|++++|.+..++. .+.++++|++|+|++|......|..+..++
T Consensus 14 ~~~~~l~~~--------~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 83 (251)
T 3m19_A 14 EGKKEVDCQ--------GKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT 83 (251)
T ss_dssp GGGTEEECT--------TCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred CCCeEEecC--------CCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC
Confidence 456778888 677778887664 688999999988887655 588889999999988774444445678888
Q ss_pred CCCeeecCCccccccCc-ccCCCCCCcccCC
Q 003773 505 NMRSLMNGQTEKLKYLP-IGISRLTSLRTLE 534 (796)
Q Consensus 505 ~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~ 534 (796)
+|++|++++|. +..+| ..++.+++|++|+
T Consensus 84 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 84 ELGTLGLANNQ-LASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TCCEEECTTSC-CCCCCTTTTTTCTTCCEEE
T ss_pred cCCEEECCCCc-ccccChhHhcccCCCCEEE
Confidence 99999998884 44444 4456777777775
No 109
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.35 E-value=1.2e-11 Score=123.27 Aligned_cols=57 Identities=12% Similarity=0.040 Sum_probs=45.5
Q ss_pred cccceEecCCCCccccchhhhccCCccEeeccccccccccchhhccccCCCeeecCCcc
Q 003773 457 IHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTE 515 (796)
Q Consensus 457 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 515 (796)
...++++++++.++.+|..+. ++|++|++++|......|..+..+++|++|++++|.
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 70 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ 70 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc
Confidence 457889999999999998765 689999999887444445568888899999988883
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.35 E-value=1.7e-12 Score=145.40 Aligned_cols=187 Identities=19% Similarity=0.188 Sum_probs=121.1
Q ss_pred CcccceeeecccccCCCcccccccccccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhcccc
Q 003773 425 VACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGKLM 504 (796)
Q Consensus 425 ~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 504 (796)
+..+..+.+. ...+..++. +..+.+|++|++++|.+..+| .+..|++|+.|+|++|. +..+|. +..++
T Consensus 20 l~~l~~l~l~--------~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~ 87 (605)
T 1m9s_A 20 FAETIKDNLK--------KKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLK 87 (605)
T ss_dssp HHHHHHHHTT--------CSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCT
T ss_pred HHHHHHHhcc--------CCCcccccc-hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCC
Confidence 3345555555 344444432 567899999999999999887 58999999999999987 666666 88999
Q ss_pred CCCeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhcccccc
Q 003773 505 NMRSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNK 584 (796)
Q Consensus 505 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~ 584 (796)
+|++|+|++| .+..+| .++.+++|+.|++ ..+.. . .+ ..+..
T Consensus 88 ~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~L--s~N~l--------~--------------------~l-----~~l~~- 129 (605)
T 1m9s_A 88 NLGWLFLDEN-KIKDLS-SLKDLKKLKSLSL--EHNGI--------S--------------------DI-----NGLVH- 129 (605)
T ss_dssp TCCEEECCSS-CCCCCT-TSTTCTTCCEEEC--TTSCC--------C--------------------CC-----GGGGG-
T ss_pred CCCEEECcCC-CCCCCh-hhccCCCCCEEEe--cCCCC--------C--------------------CC-----ccccC-
Confidence 9999999998 444444 4556666665542 11110 0 00 01222
Q ss_pred ccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCCCCCc
Q 003773 585 KNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCEHLPP 664 (796)
Q Consensus 585 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~ 664 (796)
+++|+.|++++|.+..+ ..+..+++|+.|+|++|. +..++.
T Consensus 130 -------------------------------------l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~ 170 (605)
T 1m9s_A 130 -------------------------------------LPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP 170 (605)
T ss_dssp -------------------------------------CTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG
T ss_pred -------------------------------------CCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh
Confidence 33455555555555554 456788999999999885 444444
Q ss_pred cccc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeecccc
Q 003773 665 LGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDL 719 (796)
Q Consensus 665 l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 719 (796)
+..+ +|+.|+|++|.. ..++ .+..+++|+.|++++|
T Consensus 171 l~~l~~L~~L~Ls~N~i-~~l~------------------~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHI-SDLR------------------ALAGLKNLDVLELFSQ 207 (605)
T ss_dssp GTTCTTCCEEECCSSCC-CBCG------------------GGTTCTTCSEEECCSE
T ss_pred hccCCCCCEEECcCCCC-CCCh------------------HHccCCCCCEEEccCC
Confidence 7777 788888877642 2211 1346777777777665
No 111
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.33 E-value=1e-11 Score=123.70 Aligned_cols=202 Identities=13% Similarity=0.094 Sum_probs=121.4
Q ss_pred cccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHH
Q 003773 10 TARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAIL 89 (796)
Q Consensus 10 ~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 89 (796)
.|....+|+||+++++.+..........+.+.|+|++|+||||+|+.+++.......+.. ..+.. .... ..+.
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~---~~~~~---~~~~-~~~~ 90 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGV---CDNC-REIE 90 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS---SCCSC---SHHH-HHHH
T ss_pred CCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---CCCcc---cHHH-HHHh
Confidence 355566799999999977666543333458899999999999999999876322111100 00000 0000 0000
Q ss_pred HH-----hccCCCCCccHHHHHHHHHHH-----hCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecchhhh
Q 003773 90 EV-----LDKSASSLGEFQSLMQQTQES-----IRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDRSVA 159 (796)
Q Consensus 90 ~~-----l~~~~~~~~~~~~~~~~~~~~-----l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~~~ 159 (796)
.. +..........+. ...+.+. ..+++.+||+||++..+...+..+...+.....+..+|+||+.....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHH-HHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred ccCCcceEEecCcccccHHH-HHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 00 0000000011111 1222222 23568999999997755556667777666656678888888764321
Q ss_pred h-c-cCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHHHHH
Q 003773 160 L-Q-MGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLL 223 (796)
Q Consensus 160 ~-~-~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 223 (796)
. . ......+++.+++.++..+++...+...... -..+....|++.++|+|..+..+...+
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA----HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC----BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 1 1224589999999999999998877432211 124557889999999999988776544
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.33 E-value=1.5e-12 Score=144.03 Aligned_cols=188 Identities=13% Similarity=0.034 Sum_probs=126.3
Q ss_pred ccceeeecccccCCCcccccccccccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhccccCC
Q 003773 427 CLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGKLMNM 506 (796)
Q Consensus 427 ~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 506 (796)
+|+.|+++ ++.+..+|..+. ++|++|++++|.++.+| ..+++|++|++++|. +..+|. +.. +|
T Consensus 60 ~L~~L~Ls--------~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L 122 (571)
T 3cvr_A 60 QFSELQLN--------RLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SL 122 (571)
T ss_dssp TCSEEECC--------SSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TC
T ss_pred CccEEEeC--------CCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CC
Confidence 89999999 666777887663 78999999999999998 568999999999986 666887 655 89
Q ss_pred CeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhcccccccc
Q 003773 507 RSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKN 586 (796)
Q Consensus 507 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~~ 586 (796)
++|++++| .++.+|. .+++|+.|+ ..+|.... .+. .+++|+.+.+.+.. +..+.. +. ++
T Consensus 123 ~~L~Ls~N-~l~~lp~---~l~~L~~L~--Ls~N~l~~-lp~------~l~~L~~L~Ls~N~----L~~lp~--l~--~~ 181 (571)
T 3cvr_A 123 KHLDVDNN-QLTMLPE---LPALLEYIN--ADNNQLTM-LPE------LPTSLEVLSVRNNQ----LTFLPE--LP--ES 181 (571)
T ss_dssp CEEECCSS-CCSCCCC---CCTTCCEEE--CCSSCCSC-CCC------CCTTCCEEECCSSC----CSCCCC--CC--TT
T ss_pred CEEECCCC-cCCCCCC---cCccccEEe--CCCCccCc-CCC------cCCCcCEEECCCCC----CCCcch--hh--CC
Confidence 99999999 5666877 578888886 33333321 221 33455555555422 111111 22 77
Q ss_pred ccceEEEeccccCCCCCcCccCchhHHHHHhh-CCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCCCCCc
Q 003773 587 LLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEA-LQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCEHLPP 664 (796)
Q Consensus 587 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~ 664 (796)
|+.|++++|.+..... . ... ....+.|+.|++++|.+..+|.++..+++|+.|+|++|+..+..|.
T Consensus 182 L~~L~Ls~N~L~~lp~--~----------~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 182 LEALDVSTNLLESLPA--V----------PVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp CCEEECCSSCCSSCCC--C----------C--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred CCEEECcCCCCCchhh--H----------HHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 8888888887543211 0 000 1122334888888888888888888888888888888865554443
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.33 E-value=3.4e-12 Score=121.95 Aligned_cols=69 Identities=13% Similarity=0.156 Sum_probs=30.8
Q ss_pred cccccccccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhccccCCCeeecCCc
Q 003773 444 NFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQT 514 (796)
Q Consensus 444 ~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~ 514 (796)
+.+..+| .+..+++|++|++++|.++.++ .+.++++|++|++++|......|..+..+++|++|++++|
T Consensus 54 n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n 122 (197)
T 4ezg_A 54 INVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122 (197)
T ss_dssp SCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS
T ss_pred CCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC
Confidence 3333444 3444444555555444443333 3444444444444444422233444444444444444444
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.32 E-value=4.3e-13 Score=141.84 Aligned_cols=213 Identities=12% Similarity=0.076 Sum_probs=123.7
Q ss_pred HhhhcCc-ccceeeecccccCCCcccccccc-cccccCc-----cccceEecCCCCccccch-h----hhcc-CCccEee
Q 003773 420 ELFSKVA-CLRALVIRQWFVPLDDQNFIREI-PENIGKL-----IHLKYLNLSELCIERLPE-T----LCEL-YNLQKLA 486 (796)
Q Consensus 420 ~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l-p~~~~~l-----~~L~~L~l~~~~i~~lp~-~----i~~l-~~L~~L~ 486 (796)
..+.+++ +|+.|+|+ ++.+... +..+..+ ++|++|++++|.++..+. . +..+ ++|++|+
T Consensus 44 ~~l~~~~~~L~~L~Ls--------~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~ 115 (362)
T 3goz_A 44 QAFANTPASVTSLNLS--------GNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLD 115 (362)
T ss_dssp HHHHTCCTTCCEEECC--------SSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred HHHHhCCCceeEEECc--------CCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEE
Confidence 6678888 89999999 4455443 4555554 899999999999885443 3 4455 8999999
Q ss_pred ccccccccccchhh----cc-ccCCCeeecCCccccc----cCcccCCCCC-CcccCCCeeeCCccCCCCcccccccccC
Q 003773 487 VRWCTNLRELPAGI----GK-LMNMRSLMNGQTEKLK----YLPIGISRLT-SLRTLEKFVVGGGVDGGSTCRLESLKNL 556 (796)
Q Consensus 487 l~~~~~~~~lp~~~----~~-l~~L~~L~l~~~~~~~----~~p~~i~~l~-~L~~L~~~~~~~~~~~~~~~~l~~l~~L 556 (796)
+++|......+..+ .. .++|++|++++|.... .++..+..++ +|++|++ ..+.......
T Consensus 116 Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L--s~n~l~~~~~--------- 184 (362)
T 3goz_A 116 LGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNL--RGNNLASKNC--------- 184 (362)
T ss_dssp CCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC--TTSCGGGSCH---------
T ss_pred CcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeee--cCCCCchhhH---------
Confidence 99988433333333 33 3699999999994332 2333334443 6666642 2222110000
Q ss_pred CCCCcceecCCCCCCChhhhhhcccccc-ccccceEEEeccccCCCCCcCccCchhHHHHHhhCCC-CCCCcEEEEeecC
Q 003773 557 QLLRECRVEGLSNVSHVDEAERLQLYNK-KNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQP-PLNVEELWILFYG 634 (796)
Q Consensus 557 ~~L~~l~l~~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~ 634 (796)
......+..+ ++|+.|++++|.+.+ .....+...+.. +++|+.|++++|.
T Consensus 185 ------------------~~l~~~l~~~~~~L~~L~Ls~N~i~~----------~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 185 ------------------AELAKFLASIPASVTSLDLSANLLGL----------KSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp ------------------HHHHHHHHTSCTTCCEEECTTSCGGG----------SCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred ------------------HHHHHHHHhCCCCCCEEECCCCCCCh----------hHHHHHHHHHhcCCCCceEEECcCCC
Confidence 0111123333 367777777766432 112334444433 3477888887777
Q ss_pred CCCCCc-----hhhhccCCcEEEEcCCCCC-------CCCCc-cccc-cccceeccccc
Q 003773 635 GNIFPK-----WLTLLTNLRELKLFSCVNC-------EHLPP-LGKL-LLEKLTLYNLI 679 (796)
Q Consensus 635 ~~~~p~-----~~~~l~~L~~L~L~~~~~~-------~~lp~-l~~l-~L~~L~l~~~~ 679 (796)
+...+. .+..+++|+.|+|++|... ..++. +..+ +|+.|+++++.
T Consensus 237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 655432 2245677888888877511 11111 3444 57777777654
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.30 E-value=4.4e-12 Score=121.19 Aligned_cols=79 Identities=20% Similarity=0.209 Sum_probs=65.3
Q ss_pred ccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhccccCCCeeecCCccccccCcccCCCCCCccc
Q 003773 453 IGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTEKLKYLPIGISRLTSLRT 532 (796)
Q Consensus 453 ~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 532 (796)
.+.+++|++|++++|.++.+| .+..+++|++|++++|. +..++ .+..+++|++|++++|......|..++.+++|++
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 367889999999999999998 79999999999999984 55554 6889999999999998554456677777777777
Q ss_pred CC
Q 003773 533 LE 534 (796)
Q Consensus 533 L~ 534 (796)
|+
T Consensus 117 L~ 118 (197)
T 4ezg_A 117 LD 118 (197)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.28 E-value=9.4e-14 Score=154.63 Aligned_cols=214 Identities=19% Similarity=0.117 Sum_probs=122.5
Q ss_pred cCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhccccCCCeeecCCccccccCcccCCCCCCcccC
Q 003773 454 GKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTEKLKYLPIGISRLTSLRTL 533 (796)
Q Consensus 454 ~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 533 (796)
..+++|+.|+|++|.++.+|..+++|++|+.|++++|..+..+|..+. .+......|..++.+++|+.|
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~-----------~~~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR-----------ALDPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----------HHCTGGGHHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHH-----------hcccccCCHHHHHHHHhcccC
Confidence 568889999999999999999999999999999976653333332211 111233455566666666666
Q ss_pred CCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhccccccccccceEEEeccccCCCCCcCccCchhHH
Q 003773 534 EKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDK 613 (796)
Q Consensus 534 ~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 613 (796)
+.. . ...+. +|..+.+..|. ..
T Consensus 415 ~~l--~----------~n~~~-------------------------------~L~~l~l~~n~---------------i~ 436 (567)
T 1dce_A 415 DPM--R----------AAYLD-------------------------------DLRSKFLLENS---------------VL 436 (567)
T ss_dssp CGG--G----------HHHHH-------------------------------HHHHHHHHHHH---------------HH
T ss_pred cch--h----------hcccc-------------------------------hhhhhhhhccc---------------cc
Confidence 410 0 00011 11111111111 01
Q ss_pred HHHhhCCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCCCCCc-cccc-cccceeccccccceEeCccccCC
Q 003773 614 QLLEALQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCEHLPP-LGKL-LLEKLTLYNLISVKRVGDEFLGI 691 (796)
Q Consensus 614 ~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~-l~~l-~L~~L~l~~~~~l~~~~~~~~~~ 691 (796)
.+. ...|+.|++++|.+..+|. ++.+++|+.|+|++|. +..+|. ++.+ +|+.|+|++|... .++ .
T Consensus 437 ~l~-----~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~---- 503 (567)
T 1dce_A 437 KME-----YADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALE-NVD-G---- 503 (567)
T ss_dssp HHH-----HTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCC-CCG-G----
T ss_pred ccC-----ccCceEEEecCCCCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCCCC-CCc-c----
Confidence 111 1246777777777777776 7788888888888884 346665 6666 6777776665422 122 1
Q ss_pred CCCCccCCCCCCcccCCCccceeecccccccccccccccc-ccccCCCCccceeeccCCCCCCCCCcCCC----CCCCcc
Q 003773 692 EESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTR-KENISIMPRLSSLEIDCCSKLNVLPDHLL----QTTTLQ 766 (796)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~lp~~~~----~l~~L~ 766 (796)
++.+++|+.|+++++ .+++.. |..+..+++|+.|+|++|+ +..+|..+. .+++|+
T Consensus 504 -------------l~~l~~L~~L~Ls~N------~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~ 563 (567)
T 1dce_A 504 -------------VANLPRLQELLLCNN------RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVS 563 (567)
T ss_dssp -------------GTTCSSCCEEECCSS------CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCS
T ss_pred -------------cCCCCCCcEEECCCC------CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccC
Confidence 235666777755544 233332 5566667777777777773 444443322 256666
Q ss_pred EEE
Q 003773 767 ELS 769 (796)
Q Consensus 767 ~L~ 769 (796)
.|+
T Consensus 564 ~L~ 566 (567)
T 1dce_A 564 SIL 566 (567)
T ss_dssp EEE
T ss_pred ccC
Confidence 664
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.28 E-value=3.8e-12 Score=146.40 Aligned_cols=156 Identities=21% Similarity=0.184 Sum_probs=93.9
Q ss_pred CceEEEEEeecCCCCCCCCCCCCCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCccccccccccc
Q 003773 373 EKVRHLGLNFEGGASFPMSTPEFNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREIPEN 452 (796)
Q Consensus 373 ~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~ 452 (796)
..++++.+..+.....+........|+.+.+..+....+. ...++..|..++.|+.|+|+ ++.+..+|..
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~--~~~~~~~~~~l~~L~~L~Ls--------~n~l~~l~~~ 242 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENR--MVMPKDSKYDDQLWHALDLS--------NLQIFNISAN 242 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECT--------TSCCSCCCGG
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccc--eecChhhhccCCCCcEEECC--------CCCCCCCChh
Confidence 3466777766655543333333444444443332211111 12456678889999999999 7777788888
Q ss_pred ccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhccccCCCeeecCCccccccCcccCCCCCCccc
Q 003773 453 IGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTEKLKYLPIGISRLTSLRT 532 (796)
Q Consensus 453 ~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 532 (796)
+..+++|++|+|++|.++.+|..+++|++|++|+|++|. +..+|..|+.|++|++|+|++| .++.+|..|+.+++|++
T Consensus 243 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~ 320 (727)
T 4b8c_D 243 IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQF 320 (727)
T ss_dssp GGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCC
T ss_pred hcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccE
Confidence 889999999999999999999999999999999999987 5688999999999999999999 66789999999999999
Q ss_pred CCCeeeCCcc
Q 003773 533 LEKFVVGGGV 542 (796)
Q Consensus 533 L~~~~~~~~~ 542 (796)
|+ +.+|..
T Consensus 321 L~--L~~N~l 328 (727)
T 4b8c_D 321 LG--VEGNPL 328 (727)
T ss_dssp EE--CTTSCC
T ss_pred Ee--CCCCcc
Confidence 87 344444
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.27 E-value=6.5e-12 Score=125.84 Aligned_cols=96 Identities=18% Similarity=0.174 Sum_probs=69.7
Q ss_pred cCcccceeeecccccCCCcccccccccccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhccc
Q 003773 424 KVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGKL 503 (796)
Q Consensus 424 ~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l 503 (796)
.+..+..++++ .+.+..++ .+..+++|++|++++|.++.+| .+..+++|++|++++|. +..+|. +..+
T Consensus 17 ~l~~l~~l~l~--------~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l 84 (263)
T 1xeu_A 17 GLANAVKQNLG--------KQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDL 84 (263)
T ss_dssp HHHHHHHHHHT--------CSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTC
T ss_pred HHHHHHHHHhc--------CCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccC
Confidence 45667777777 56666666 5778888889999888888887 68888888999888876 666666 8888
Q ss_pred cCCCeeecCCccccccCcccCCCCCCcccCC
Q 003773 504 MNMRSLMNGQTEKLKYLPIGISRLTSLRTLE 534 (796)
Q Consensus 504 ~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 534 (796)
++|++|++++| .++.+|.... ++|+.|+
T Consensus 85 ~~L~~L~L~~N-~l~~l~~~~~--~~L~~L~ 112 (263)
T 1xeu_A 85 TKLEELSVNRN-RLKNLNGIPS--ACLSRLF 112 (263)
T ss_dssp SSCCEEECCSS-CCSCCTTCCC--SSCCEEE
T ss_pred CCCCEEECCCC-ccCCcCcccc--CcccEEE
Confidence 88888888888 4444443221 4444443
No 119
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.27 E-value=1.8e-11 Score=130.97 Aligned_cols=293 Identities=12% Similarity=0.038 Sum_probs=167.7
Q ss_pred ccCcccccHHHHHHHhcccCC---CCCcEEEEEEcCCCCcHHHHHHHHHcCcccccc---CCeEEEEEeCCcCCHHHHHH
Q 003773 13 LKLQIEGLDDDNTLALASSEQ---QKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRK---FDIVIWVCVSDAFEEIRIAK 86 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~ 86 (796)
.+..|+||+++++.+...+.. ....+.+.|+|++|+||||+|+++++.. ... -..++|+.+....+...+..
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKL--HKKFLGKFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHH--HHHTCSSCEEEEEEHHHHCSHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHH--HHHhcCCceEEEEECCCCCCHHHHHH
Confidence 457899999999977665432 3445789999999999999999999863 222 23477888776667777888
Q ss_pred HHHHHhccCCCC-CccHHHHHHHHHHHhC--CceEEEEEeCCCCCC----ccChhhHhhhccC-CCCCcEEEEEecchhh
Q 003773 87 AILEVLDKSASS-LGEFQSLMQQTQESIR--GKKFFLVLDDVWDGD----FKKWDPFFSCLKN-GHHESKILITTRDRSV 158 (796)
Q Consensus 87 ~i~~~l~~~~~~-~~~~~~~~~~~~~~l~--~~~~LlvlDd~~~~~----~~~~~~l~~~~~~-~~~gs~iiiTsr~~~~ 158 (796)
.++..++..... .....+....+.+.+. +++.+||+|+++... .+.+..+...+.. ...+..+|+||+....
T Consensus 96 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 96 DLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp HHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGG
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCCh
Confidence 887777543221 1234444555555553 458999999995521 2223333333322 2334567888876543
Q ss_pred hhccCc-------cceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcC---CCchhHHHHHH-HHh---
Q 003773 159 ALQMGS-------IDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCK---GLPLAAKVIGN-LLR--- 224 (796)
Q Consensus 159 ~~~~~~-------~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~PLal~~~~~-~l~--- 224 (796)
...+.. ...+.+++++.++..+++...+..... ......+..+.+++.++ |.|..+..+.. ...
T Consensus 176 ~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 176 VDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK--PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAE 253 (386)
T ss_dssp GGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC--SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 222211 148999999999999999876521110 11122455667777777 99984433322 221
Q ss_pred --c--CCCHHHHHHHHhhhhccccccCCCccchhhhhccCCCChhhhhhHHhhhcCCCC-C-ceecHHHHHHHHH--H--
Q 003773 225 --S--KRTVSEWQRILDSEMWKVEEIGKGLLPPLLLSYNDLPSSSMVKRCFSYCSVFPK-D-YNIRKEELITLWM--A-- 294 (796)
Q Consensus 225 --~--~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~k~~fl~~~~fp~-~-~~i~~~~Li~~wi--a-- 294 (796)
+ .-+.+....++.... ...+...+..++. ..+..+..++...+ + ..+...++..... +
T Consensus 254 ~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~--~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~ 321 (386)
T 2qby_A 254 RMKDTKVKEEYVYMAKEEIE----------RDRVRDIILTLPF--HSKLVLMAVVSISSEENVVSTTGAVYETYLNICKK 321 (386)
T ss_dssp HTTCSSCCHHHHHHHHHHHH----------HHHHHHHHHTSCH--HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHH
T ss_pred hcCCCccCHHHHHHHHHHHh----------hchHHHHHHcCCH--HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHh
Confidence 1 114445554444321 1234455667766 56665555553211 1 1233333322211 1
Q ss_pred cCCcCCCCChhHHHHHHHHHHHHHhccccccc
Q 003773 295 QCYLNSEEDEEMEIIGEEYFNILATRSFFQEF 326 (796)
Q Consensus 295 ~g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 326 (796)
-| +... .......+++.|...+++...
T Consensus 322 ~g-~~~~----~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 322 LG-VEAV----TQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HT-CCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred cC-CCCC----CHHHHHHHHHHHHhCCCEEEE
Confidence 12 1111 113356678889999998764
No 120
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.24 E-value=1.2e-10 Score=114.01 Aligned_cols=192 Identities=13% Similarity=-0.045 Sum_probs=119.6
Q ss_pred cccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHH
Q 003773 10 TARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAIL 89 (796)
Q Consensus 10 ~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 89 (796)
.|....+++||++.++.+.+..... ..+.+.|+|++|+|||++|+.+++.......-...+.+..+.......+...+.
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERK-NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIK 90 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTT-CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHH
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHH
Confidence 3455677999999999777665432 233489999999999999999987632111112244455444333333322222
Q ss_pred HHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecchhhh-hc-cCccce
Q 003773 90 EVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDRSVA-LQ-MGSIDI 167 (796)
Q Consensus 90 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~~~-~~-~~~~~~ 167 (796)
....... ...+++.+||+||++.........+...+.....+.++|+||+..... .. ......
T Consensus 91 ~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~ 155 (226)
T 2chg_A 91 EFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAV 155 (226)
T ss_dssp HHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCce
Confidence 2111100 113578999999997655445556666665555677889888864321 11 122348
Q ss_pred EEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHHH
Q 003773 168 ISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIGN 221 (796)
Q Consensus 168 ~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~ 221 (796)
+++.+++.++..+++.+.+...+.. -..+....+++.++|.|..+..+..
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 156 FRFKPVPKEAMKKRLLEICEKEGVK----ITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCC----BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999999998876422211 1245677889999999986554443
No 121
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.19 E-value=1.6e-10 Score=111.34 Aligned_cols=88 Identities=28% Similarity=0.412 Sum_probs=57.3
Q ss_pred ccccccccccccCccccceEecCCCCccccchh-hhccCCccEeeccccccccccch-hhccccCCCeeecCCccccccC
Q 003773 443 QNFIREIPENIGKLIHLKYLNLSELCIERLPET-LCELYNLQKLAVRWCTNLRELPA-GIGKLMNMRSLMNGQTEKLKYL 520 (796)
Q Consensus 443 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~ 520 (796)
++.+..+|..+ .++|++|++++|.++.+|.. +.++++|++|++++|. +..+|. .+..+++|++|++++| .+..+
T Consensus 16 ~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~ 91 (208)
T 2o6s_A 16 SQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTN-QLQSL 91 (208)
T ss_dssp SSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCC
T ss_pred CCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCC-cCCcc
Confidence 45556666544 45788888888888877664 5778888888888775 445554 4577888888888877 33344
Q ss_pred ccc-CCCCCCcccCC
Q 003773 521 PIG-ISRLTSLRTLE 534 (796)
Q Consensus 521 p~~-i~~l~~L~~L~ 534 (796)
|.. ++.+++|+.|+
T Consensus 92 ~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 92 PNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTTTTTCTTCCEEE
T ss_pred CHhHhcCccCCCEEE
Confidence 332 34444444443
No 122
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.17 E-value=3.4e-11 Score=117.05 Aligned_cols=112 Identities=24% Similarity=0.221 Sum_probs=86.1
Q ss_pred chhhHHHhhhcCcccceeeecccccCCCcccccccc-cccccCccccceEecCCCCccccchh-hhccCCccEeeccccc
Q 003773 414 NGSILVELFSKVACLRALVIRQWFVPLDDQNFIREI-PENIGKLIHLKYLNLSELCIERLPET-LCELYNLQKLAVRWCT 491 (796)
Q Consensus 414 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~ 491 (796)
+..++...|.++++|++|+|+ ++.+..+ |..+..+++|++|+|++|.++.+|.. +.++++|++|+|++|.
T Consensus 44 i~~i~~~~~~~l~~L~~L~Ls--------~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 115 (220)
T 2v9t_B 44 IKVIPPGAFSPYKKLRRIDLS--------NNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115 (220)
T ss_dssp CCEECTTSSTTCTTCCEEECC--------SSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcCHhHhhCCCCCCEEECC--------CCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCC
Confidence 344555567888899999998 5556655 77888899999999999998888875 5788999999999887
Q ss_pred cccccchhhccccCCCeeecCCccccccCcc-cCCCCCCcccCC
Q 003773 492 NLRELPAGIGKLMNMRSLMNGQTEKLKYLPI-GISRLTSLRTLE 534 (796)
Q Consensus 492 ~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~ 534 (796)
.....|..|..+++|++|++++|. ++.+|. .+..+++|+.|+
T Consensus 116 l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 116 INCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEE
T ss_pred CCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEE
Confidence 444446678888999999999884 444444 477788888776
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.15 E-value=6.6e-11 Score=115.83 Aligned_cols=110 Identities=27% Similarity=0.401 Sum_probs=81.4
Q ss_pred hhhHHHhhhcCcccceeeecccccCCCcccccccccc-cccCccccceEecCCCCccccchh-hhccCCccEeecccccc
Q 003773 415 GSILVELFSKVACLRALVIRQWFVPLDDQNFIREIPE-NIGKLIHLKYLNLSELCIERLPET-LCELYNLQKLAVRWCTN 492 (796)
Q Consensus 415 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~ 492 (796)
..+.+..|.++++|++|+|+ ++.+..+|. .+..+++|++|+|++|.++.+|.. +..+++|++|+|++|.
T Consensus 53 ~~~~~~~~~~l~~L~~L~L~--------~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~- 123 (229)
T 3e6j_A 53 TKLEPGVFDSLINLKELYLG--------SNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK- 123 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECC--------SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred CccCHHHhhCccCCcEEECC--------CCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCc-
Confidence 33444557778888888888 666666654 457788888888888888877764 5778888888888876
Q ss_pred ccccchhhccccCCCeeecCCccccccCcc-cCCCCCCcccCC
Q 003773 493 LRELPAGIGKLMNMRSLMNGQTEKLKYLPI-GISRLTSLRTLE 534 (796)
Q Consensus 493 ~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~ 534 (796)
+..+|..+..+++|++|++++| .+..+|. .+..+++|+.|+
T Consensus 124 l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 124 LTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp CCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred ccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEE
Confidence 6678888888888888888888 4555553 467777777775
No 124
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.15 E-value=1.1e-10 Score=116.94 Aligned_cols=98 Identities=20% Similarity=0.243 Sum_probs=75.6
Q ss_pred hhcCcccceeeecccccCCCcccccccccccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhc
Q 003773 422 FSKVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIG 501 (796)
Q Consensus 422 ~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~ 501 (796)
+..+++|++|+++ ++.+..+| .++.+++|++|++++|.++.+|. +.++++|++|++++|. +..+|.. .
T Consensus 37 ~~~l~~L~~L~l~--------~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~-~ 104 (263)
T 1xeu_A 37 QKELSGVQNFNGD--------NSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNGI-P 104 (263)
T ss_dssp HHHHTTCSEEECT--------TSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTTC-C
T ss_pred hhhcCcCcEEECc--------CCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCcc-c
Confidence 5677888888888 55666776 57888888899998888888877 8888888899888876 6666653 3
Q ss_pred cccCCCeeecCCccccccCcccCCCCCCcccCC
Q 003773 502 KLMNMRSLMNGQTEKLKYLPIGISRLTSLRTLE 534 (796)
Q Consensus 502 ~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 534 (796)
. ++|++|++++| .++.+| .++.+++|+.|+
T Consensus 105 ~-~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~ 134 (263)
T 1xeu_A 105 S-ACLSRLFLDNN-ELRDTD-SLIHLKNLEILS 134 (263)
T ss_dssp C-SSCCEEECCSS-CCSBSG-GGTTCTTCCEEE
T ss_pred c-CcccEEEccCC-ccCCCh-hhcCcccccEEE
Confidence 3 88888888888 455554 477777777775
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.14 E-value=9e-11 Score=114.02 Aligned_cols=142 Identities=18% Similarity=0.119 Sum_probs=99.9
Q ss_pred EEEEeecCCCCCCCCCCCCCCccEEEEecCCCCCCCCchhh-HHHhhhcCcccceeeecccccCCCcccccccccc-ccc
Q 003773 377 HLGLNFEGGASFPMSTPEFNRLRTLLIYDLSPYSPSLNGSI-LVELFSKVACLRALVIRQWFVPLDDQNFIREIPE-NIG 454 (796)
Q Consensus 377 ~l~l~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~-~~~ 454 (796)
.+.+..+.....+... ...++.| +++ .+.+..+ +...|.++++|++|+|+ ++.+..++. .+.
T Consensus 15 ~l~~s~n~l~~iP~~~--~~~~~~L---~L~---~N~l~~~~~~~~~~~l~~L~~L~L~--------~N~i~~i~~~~~~ 78 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI--PQYTAEL---RLN---NNEFTVLEATGIFKKLPQLRKINFS--------NNKITDIEEGAFE 78 (220)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEE---ECC---SSCCCEECCCCCGGGCTTCCEEECC--------SSCCCEECTTTTT
T ss_pred EeEeCCCCcccCccCC--CCCCCEE---EcC---CCcCCccCchhhhccCCCCCEEECC--------CCcCCEECHHHhC
Confidence 4555555555444332 2334444 333 1222232 33457888999999998 666666644 788
Q ss_pred CccccceEecCCCCccccch-hhhccCCccEeeccccccccccchhhccccCCCeeecCCccccccCcccCCCCCCcccC
Q 003773 455 KLIHLKYLNLSELCIERLPE-TLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTEKLKYLPIGISRLTSLRTL 533 (796)
Q Consensus 455 ~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 533 (796)
.+++|++|+|++|.++.+|. .+.++++|++|+|++|......|..+..+++|++|++++|......|..+..+++|+.|
T Consensus 79 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 79 GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence 89999999999999887766 48889999999999887544557778899999999999985444447778888888888
Q ss_pred C
Q 003773 534 E 534 (796)
Q Consensus 534 ~ 534 (796)
+
T Consensus 159 ~ 159 (220)
T 2v70_A 159 N 159 (220)
T ss_dssp E
T ss_pred E
Confidence 6
No 126
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.12 E-value=7e-11 Score=113.96 Aligned_cols=107 Identities=33% Similarity=0.463 Sum_probs=59.4
Q ss_pred HHHhhhcCcccceeeecccccCCCcccccccccc-cccCccccceEecCCCCccccchh-hhccCCccEeeccccccccc
Q 003773 418 LVELFSKVACLRALVIRQWFVPLDDQNFIREIPE-NIGKLIHLKYLNLSELCIERLPET-LCELYNLQKLAVRWCTNLRE 495 (796)
Q Consensus 418 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~ 495 (796)
+...|.++++|++|+++ ++.+..+|. .+..+++|++|++++|.++.+|.. +.++++|++|++++|. +..
T Consensus 44 ~~~~~~~l~~L~~L~l~--------~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~ 114 (208)
T 2o6s_A 44 PNGVFDELTSLTQLYLG--------GNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQS 114 (208)
T ss_dssp CTTTTTTCTTCSEEECC--------SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCC
T ss_pred ChhhhcccccCcEEECC--------CCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCc-Ccc
Confidence 33445566666666666 444444443 245566666666666666655543 4566666666666654 334
Q ss_pred cch-hhccccCCCeeecCCccccccCccc-CCCCCCcccCC
Q 003773 496 LPA-GIGKLMNMRSLMNGQTEKLKYLPIG-ISRLTSLRTLE 534 (796)
Q Consensus 496 lp~-~~~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~ 534 (796)
+|. .+..+++|++|++++| .++.+|.. +..+++|+.|+
T Consensus 115 ~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 115 LPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIW 154 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred cCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEE
Confidence 433 3556666666666666 33344433 55566666654
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.11 E-value=5e-11 Score=108.07 Aligned_cols=100 Identities=18% Similarity=0.216 Sum_probs=57.7
Q ss_pred CcccceeeecccccCCCcccccc--cccccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhcc
Q 003773 425 VACLRALVIRQWFVPLDDQNFIR--EIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGK 502 (796)
Q Consensus 425 ~~~L~~L~l~~~~~~~~~~~~~~--~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~ 502 (796)
.++|+.|+++ ++.+. .+|..++.+++|++|++++|.++.+ ..++++++|++|++++|.....+|..+..
T Consensus 16 ~~~l~~L~l~--------~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 86 (149)
T 2je0_A 16 PSDVKELVLD--------NSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEK 86 (149)
T ss_dssp GGGCSEEECT--------TCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHH
T ss_pred CccCeEEEcc--------CCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhh
Confidence 4556666666 33333 5555556666666666666666655 45666666666666665533335555555
Q ss_pred ccCCCeeecCCccccccCc--ccCCCCCCcccCC
Q 003773 503 LMNMRSLMNGQTEKLKYLP--IGISRLTSLRTLE 534 (796)
Q Consensus 503 l~~L~~L~l~~~~~~~~~p--~~i~~l~~L~~L~ 534 (796)
+++|++|++++|. ++.+| ..++.+++|++|+
T Consensus 87 l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~ 119 (149)
T 2je0_A 87 CPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLD 119 (149)
T ss_dssp CTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEE
T ss_pred CCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEe
Confidence 6666666666663 34332 4555555666554
No 128
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.10 E-value=2.6e-10 Score=120.19 Aligned_cols=88 Identities=23% Similarity=0.231 Sum_probs=47.3
Q ss_pred ccccccccccccCccccceEecCCCCccccchh-hh-ccCCccEeeccccccccccc-hhhccccCCCeeecCCcccccc
Q 003773 443 QNFIREIPENIGKLIHLKYLNLSELCIERLPET-LC-ELYNLQKLAVRWCTNLRELP-AGIGKLMNMRSLMNGQTEKLKY 519 (796)
Q Consensus 443 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-i~-~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~ 519 (796)
++.+..+|..+. ..+++|+|++|.++.+|.. +. ++++|++|+|++|. +..++ ..|..+++|++|++++|. +..
T Consensus 27 ~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~ 102 (361)
T 2xot_A 27 KQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNH-LHT 102 (361)
T ss_dssp SSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCE
T ss_pred CCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCc-CCc
Confidence 445555555432 3456666666666655543 33 56666666666655 33333 346666666666666663 333
Q ss_pred Ccc-cCCCCCCcccCC
Q 003773 520 LPI-GISRLTSLRTLE 534 (796)
Q Consensus 520 ~p~-~i~~l~~L~~L~ 534 (796)
+|. .+..+++|+.|+
T Consensus 103 ~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 103 LDEFLFSDLQALEVLL 118 (361)
T ss_dssp ECTTTTTTCTTCCEEE
T ss_pred CCHHHhCCCcCCCEEE
Confidence 332 345555555554
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.10 E-value=4.8e-11 Score=137.25 Aligned_cols=90 Identities=24% Similarity=0.238 Sum_probs=70.3
Q ss_pred ccccccccccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhccccCCCeeecCCccccccCcc
Q 003773 443 QNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTEKLKYLPI 522 (796)
Q Consensus 443 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~ 522 (796)
++.+...|..+..+.+|+.|+|++|.+..+|..+.++++|++|+|++|. +..+|..|+.|++|++|+|++| .+..+|.
T Consensus 210 ~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~ 287 (727)
T 4b8c_D 210 ENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHN-RLTSLPA 287 (727)
T ss_dssp ------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTS-CCSSCCS
T ss_pred ccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCC-cCCccCh
Confidence 3444456788899999999999999999999999999999999999987 5699999999999999999999 4668888
Q ss_pred cCCCCCCcccCC
Q 003773 523 GISRLTSLRTLE 534 (796)
Q Consensus 523 ~i~~l~~L~~L~ 534 (796)
.++.|++|++|+
T Consensus 288 ~~~~l~~L~~L~ 299 (727)
T 4b8c_D 288 ELGSCFQLKYFY 299 (727)
T ss_dssp SGGGGTTCSEEE
T ss_pred hhcCCCCCCEEE
Confidence 888888887775
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.09 E-value=9.8e-11 Score=108.61 Aligned_cols=100 Identities=24% Similarity=0.291 Sum_probs=56.1
Q ss_pred CcccceeeecccccCCCcccccc--cccccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhhcc
Q 003773 425 VACLRALVIRQWFVPLDDQNFIR--EIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGIGK 502 (796)
Q Consensus 425 ~~~L~~L~l~~~~~~~~~~~~~~--~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~ 502 (796)
.++|+.|+++ ++.+. .+|..+..+++|++|++++|.++.+ ..+.++++|++|++++|.....+|..+..
T Consensus 23 ~~~L~~L~l~--------~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 23 PAAVRELVLD--------NCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp TTSCSEEECC--------SCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred cccCCEEECC--------CCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 3556666666 33333 5555556666666666666666555 45566666666666665533335555555
Q ss_pred ccCCCeeecCCccccccCc--ccCCCCCCcccCC
Q 003773 503 LMNMRSLMNGQTEKLKYLP--IGISRLTSLRTLE 534 (796)
Q Consensus 503 l~~L~~L~l~~~~~~~~~p--~~i~~l~~L~~L~ 534 (796)
+++|++|++++| .++.+| ..++.+++|+.|+
T Consensus 94 l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~ 126 (168)
T 2ell_A 94 LPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLD 126 (168)
T ss_dssp CTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEE
T ss_pred CCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEE
Confidence 666666666666 344443 3455555555554
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.08 E-value=5.9e-11 Score=107.59 Aligned_cols=104 Identities=25% Similarity=0.195 Sum_probs=83.0
Q ss_pred hhhcCcccceeeecccccCCCcccccccccccccCccccceEecCCCCccc-cchhhhccCCccEeeccccccccccc--
Q 003773 421 LFSKVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIER-LPETLCELYNLQKLAVRWCTNLRELP-- 497 (796)
Q Consensus 421 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~l~~~~~~~~lp-- 497 (796)
.+..+++|++|+++ ++.+..+ ..++.+++|++|++++|.++. +|..++++++|++|++++|. +..+|
T Consensus 37 ~~~~l~~L~~L~l~--------~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~ 106 (149)
T 2je0_A 37 LTDEFEELEFLSTI--------NVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTI 106 (149)
T ss_dssp CCTTCTTCCEEECT--------TSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC-CCSHHHH
T ss_pred HHhhcCCCcEEECc--------CCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc-CCChHHH
Confidence 46778889999998 5556655 668889999999999999887 78777889999999999887 55544
Q ss_pred hhhccccCCCeeecCCccccccCcc----cCCCCCCcccCCC
Q 003773 498 AGIGKLMNMRSLMNGQTEKLKYLPI----GISRLTSLRTLEK 535 (796)
Q Consensus 498 ~~~~~l~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~~ 535 (796)
..++.+++|++|++++| .+...|. .++.+++|+.|++
T Consensus 107 ~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 107 EPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp GGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETT
T ss_pred HHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccC
Confidence 77889999999999998 5555554 5777888887763
No 132
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.07 E-value=5.8e-10 Score=115.86 Aligned_cols=193 Identities=13% Similarity=0.071 Sum_probs=118.0
Q ss_pred cccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHH
Q 003773 10 TARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAIL 89 (796)
Q Consensus 10 ~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 89 (796)
.|....+|+||+..++.+......+. .+.+.|+|++|+|||++|+.+++..........+++++.+.......+ ++++
T Consensus 16 ~p~~~~~~~g~~~~~~~l~~~l~~~~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~ 93 (323)
T 1sxj_B 16 RPQVLSDIVGNKETIDRLQQIAKDGN-MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQI 93 (323)
T ss_dssp CCSSGGGCCSCTHHHHHHHHHHHSCC-CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHH
T ss_pred CCCCHHHHHCCHHHHHHHHHHHHcCC-CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHH
Confidence 35556789999999997776654332 233889999999999999999876311111112444444433232222 1222
Q ss_pred HHhccCCCCCccHHHHHHHHHHHh-CCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecchhh-hhc-cCccc
Q 003773 90 EVLDKSASSLGEFQSLMQQTQESI-RGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDRSV-ALQ-MGSID 166 (796)
Q Consensus 90 ~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~~-~~~-~~~~~ 166 (796)
+.+.... ..+ .+++.++|+||++......+..+...+.....++++|+||+...- ... .....
T Consensus 94 ~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~ 159 (323)
T 1sxj_B 94 KHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA 159 (323)
T ss_dssp HHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhce
Confidence 2211000 012 456899999999765544555566655555566788888876431 111 12235
Q ss_pred eEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCch-hHHHHHHH
Q 003773 167 IISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPL-AAKVIGNL 222 (796)
Q Consensus 167 ~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~~~~ 222 (796)
.+++.+++.++..+++...+...+.. -..+.+..+++.++|.|. |+..+...
T Consensus 160 ~i~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 160 ILRYSKLSDEDVLKRLLQIIKLEDVK----YTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCC----BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEeecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 89999999999999998876322211 114557889999999995 45555443
No 133
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.07 E-value=2.7e-10 Score=110.63 Aligned_cols=99 Identities=22% Similarity=0.305 Sum_probs=46.8
Q ss_pred ccceeeecccccCCCcccccccccc-cccCccccceEecCCCCcccc-chhhhccCCccEeeccccccccccchh-hccc
Q 003773 427 CLRALVIRQWFVPLDDQNFIREIPE-NIGKLIHLKYLNLSELCIERL-PETLCELYNLQKLAVRWCTNLRELPAG-IGKL 503 (796)
Q Consensus 427 ~L~~L~l~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~-~~~l 503 (796)
.|+.|+++ ++.+..+|. .+..+++|++|+|++|.++.+ |..+.++++|++|+|++|. +..+|.. |..+
T Consensus 33 ~l~~L~l~--------~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l 103 (220)
T 2v9t_B 33 TITEIRLE--------QNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGL 103 (220)
T ss_dssp TCCEEECC--------SSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTC
T ss_pred CCCEEECC--------CCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCC
Confidence 45555555 334444432 445555555555555555544 3445555555555555544 3344432 3445
Q ss_pred cCCCeeecCCccccccCcccCCCCCCcccCC
Q 003773 504 MNMRSLMNGQTEKLKYLPIGISRLTSLRTLE 534 (796)
Q Consensus 504 ~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 534 (796)
++|++|++++|......|..+..+++|+.|+
T Consensus 104 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 134 (220)
T 2v9t_B 104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLS 134 (220)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCEeCHHHcCCCCCCCEEE
Confidence 5555555555532222233344444444443
No 134
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.06 E-value=2.7e-10 Score=111.47 Aligned_cols=131 Identities=21% Similarity=0.260 Sum_probs=105.0
Q ss_pred CCCceEEEEEeecCCCCCCCCCCCCCCccEEEEecCCCCCCCCchhhHHHhhhcCcccceeeecccccCCCccccccccc
Q 003773 371 FGEKVRHLGLNFEGGASFPMSTPEFNRLRTLLIYDLSPYSPSLNGSILVELFSKVACLRALVIRQWFVPLDDQNFIREIP 450 (796)
Q Consensus 371 ~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp 450 (796)
.+..++.+.+..+.+.... ...+.+++.|+.++++ .+.+..++...|.++++|++|+|+ ++.+..+|
T Consensus 38 ~~~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~---~N~l~~i~~~~~~~l~~L~~L~Ls--------~N~l~~l~ 104 (229)
T 3e6j_A 38 IPTNAQILYLHDNQITKLE--PGVFDSLINLKELYLG---SNQLGALPVGVFDSLTQLTVLDLG--------TNQLTVLP 104 (229)
T ss_dssp CCTTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECC---SSCCCCCCTTTTTTCTTCCEEECC--------SSCCCCCC
T ss_pred CCCCCCEEEcCCCccCccC--HHHhhCccCCcEEECC---CCCCCCcChhhcccCCCcCEEECC--------CCcCCccC
Confidence 3578899999988876432 2335555666666665 334456666778999999999999 67777775
Q ss_pred cc-ccCccccceEecCCCCccccchhhhccCCccEeeccccccccccc-hhhccccCCCeeecCCcc
Q 003773 451 EN-IGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELP-AGIGKLMNMRSLMNGQTE 515 (796)
Q Consensus 451 ~~-~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~ 515 (796)
.. +..+++|++|++++|.++.+|..+.++++|++|+|++|. +..+| ..+..+++|++|++++|.
T Consensus 105 ~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 105 SAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred hhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCC
Confidence 54 689999999999999999999999999999999999986 66666 458899999999999984
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.06 E-value=1.2e-10 Score=108.93 Aligned_cols=100 Identities=23% Similarity=0.216 Sum_probs=74.5
Q ss_pred CcccceeeecccccCCCcccccccccccccCccccceEecCCCCccccchhh-hccCCccEeeccccccccccch--hhc
Q 003773 425 VACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPETL-CELYNLQKLAVRWCTNLRELPA--GIG 501 (796)
Q Consensus 425 ~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L~~L~l~~~~~~~~lp~--~~~ 501 (796)
.++|++|+++ ++.+..+ ..++.+++|++|++++|.++.+|..+ .++++|++|++++|. +..+|. .+.
T Consensus 41 ~~~L~~L~Ls--------~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~ 110 (176)
T 1a9n_A 41 LDQFDAIDFS--------DNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLA 110 (176)
T ss_dssp TTCCSEEECC--------SSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGG
T ss_pred CCCCCEEECC--------CCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCc-CCcchhhHhhh
Confidence 3478888888 5555555 56778888888888888888877654 788888888888876 566776 677
Q ss_pred cccCCCeeecCCccccccCccc----CCCCCCcccCCC
Q 003773 502 KLMNMRSLMNGQTEKLKYLPIG----ISRLTSLRTLEK 535 (796)
Q Consensus 502 ~l~~L~~L~l~~~~~~~~~p~~----i~~l~~L~~L~~ 535 (796)
.+++|++|++++| .+..+|.. ++.+++|+.|++
T Consensus 111 ~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 111 SLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp GCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETT
T ss_pred cCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCC
Confidence 8888888888888 45566654 667777777764
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=5e-10 Score=116.49 Aligned_cols=264 Identities=13% Similarity=0.112 Sum_probs=138.9
Q ss_pred CcccceeeecccccCCCcccccccccccccCccccceEecCCCCccccch-hhhc--------cCCccEeeccccccccc
Q 003773 425 VACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPE-TLCE--------LYNLQKLAVRWCTNLRE 495 (796)
Q Consensus 425 ~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~--------l~~L~~L~l~~~~~~~~ 495 (796)
+++|+.|||+ ++.+..+...-+.++.++++.+..+. +|. .+.+ +.+|+.|+|.. .+..
T Consensus 48 l~~L~~LdLs--------~n~i~~~~~~~~~~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~ 114 (329)
T 3sb4_A 48 FPSLKVLDIS--------NAEIKMYSGKAGTYPNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE--KIKN 114 (329)
T ss_dssp CTTCCEEEEE--------EEEECCEEESSSSSGGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT--TCCE
T ss_pred hccCeEEecC--------cceeEEecCccccccccccccccccc---cCHHHhcccccccccccCCCcEEECCc--cccc
Confidence 6778888888 44444221112223334555555553 333 4556 88888888886 3666
Q ss_pred cch-hhccccCCCeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChh
Q 003773 496 LPA-GIGKLMNMRSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVD 574 (796)
Q Consensus 496 lp~-~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~ 574 (796)
++. .|..+++|+.|++.+|.....-+..|..+.++..+...... ....+..+
T Consensus 115 I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~------------~~~~~~~i--------------- 167 (329)
T 3sb4_A 115 IEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSD------------AYRFKNRW--------------- 167 (329)
T ss_dssp ECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTH------------HHHTSTTT---------------
T ss_pred hhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchh------------hhhccccc---------------
Confidence 654 57888888888888874433333445555555444311000 00000000
Q ss_pred hhhhcccccccccc-ceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCchh-hhccCCcEEE
Q 003773 575 EAERLQLYNKKNLL-RLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPKWL-TLLTNLRELK 652 (796)
Q Consensus 575 ~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~-~~l~~L~~L~ 652 (796)
....+.+|..|+ .+.+.... .....+...-..+.++..+.+.+.-...-...+ ..+++|++|+
T Consensus 168 --~~~~f~~~~~L~~~i~~~~~~-------------~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~ 232 (329)
T 3sb4_A 168 --EHFAFIEGEPLETTIQVGAMG-------------KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLD 232 (329)
T ss_dssp --TTSCEEESCCCEEEEEECTTC-------------CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEE
T ss_pred --cccccccccccceeEEecCCC-------------cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEE
Confidence 001122222222 11111100 001111111122334455555443211101111 1367788888
Q ss_pred EcCCCCCCCCCc--cccc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccc-eeeccccccccccccc
Q 003773 653 LFSCVNCEHLPP--LGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLK-SLKIEDLDELEEWNYR 728 (796)
Q Consensus 653 L~~~~~~~~lp~--l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~L~~~~~~ 728 (796)
|.+|. +..+|. +..+ +|+.|++.++ +..++... +.++++|+ .+.+.+ +++.+
T Consensus 233 L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~a----------------F~~~~~L~~~l~l~~--~l~~I--- 288 (329)
T 3sb4_A 233 ISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRV----------------FSNCGRLAGTLELPA--SVTAI--- 288 (329)
T ss_dssp CTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEECTTT----------------TTTCTTCCEEEEECT--TCCEE---
T ss_pred CCCCC-cceecHhhhhCCCCCCEEECCcc--cceehHHH----------------hhCChhccEEEEEcc--cceEE---
Confidence 87763 555555 5666 7777777663 55555432 23677888 887765 44433
Q ss_pred cccccccCCCCccceeeccCCCCCCCCCc-CCCCCCCccEEEE
Q 003773 729 VTRKENISIMPRLSSLEIDCCSKLNVLPD-HLLQTTTLQELSI 770 (796)
Q Consensus 729 ~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l 770 (796)
.+..|..+++|+.|+++++ .++.++. .+.++++|+.|+.
T Consensus 289 --~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 289 --EFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp --CTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEEC
T ss_pred --chhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhcc
Confidence 2567888999999999887 5666654 6778889998863
No 137
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.05 E-value=2.6e-10 Score=105.73 Aligned_cols=104 Identities=25% Similarity=0.198 Sum_probs=79.7
Q ss_pred hhcCcccceeeecccccCCCcccccccccccccCccccceEecCCCCccc-cchhhhccCCccEeeccccccccccc--h
Q 003773 422 FSKVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIER-LPETLCELYNLQKLAVRWCTNLRELP--A 498 (796)
Q Consensus 422 ~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~l~~~~~~~~lp--~ 498 (796)
+..+++|++|+++ ++.+..+ ..++.+++|++|++++|.+.. +|..+.++++|++|++++|. +..+| .
T Consensus 45 ~~~l~~L~~L~l~--------~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~ 114 (168)
T 2ell_A 45 TAEFVNLEFLSLI--------NVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK-LKDISTLE 114 (168)
T ss_dssp CGGGGGCCEEEEE--------SSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSS-CCSSGGGG
T ss_pred HHhCCCCCEEeCc--------CCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCc-cCcchhHH
Confidence 5677888888888 5555555 667788888888888888886 67777778888888888875 56655 5
Q ss_pred hhccccCCCeeecCCccccccCcc----cCCCCCCcccCCCe
Q 003773 499 GIGKLMNMRSLMNGQTEKLKYLPI----GISRLTSLRTLEKF 536 (796)
Q Consensus 499 ~~~~l~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~~~ 536 (796)
.+..+++|++|++++| .+..+|. .+..+++|+.|++.
T Consensus 115 ~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 115 PLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp GGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred HHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCC
Confidence 7888888888888888 4556665 67788888888753
No 138
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.02 E-value=5.8e-10 Score=108.30 Aligned_cols=101 Identities=16% Similarity=0.080 Sum_probs=67.9
Q ss_pred cccceeeecccccCCCccccccccc--ccccCccccceEecCCCCccccch-hhhccCCccEeeccccccccccchhhcc
Q 003773 426 ACLRALVIRQWFVPLDDQNFIREIP--ENIGKLIHLKYLNLSELCIERLPE-TLCELYNLQKLAVRWCTNLRELPAGIGK 502 (796)
Q Consensus 426 ~~L~~L~l~~~~~~~~~~~~~~~lp--~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~ 502 (796)
..++.|+++ ++.+..++ ..++.+++|++|++++|.++.++. .+.++++|++|+|++|......|..|..
T Consensus 32 ~~~~~L~L~--------~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 103 (220)
T 2v70_A 32 QYTAELRLN--------NNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKG 103 (220)
T ss_dssp TTCSEEECC--------SSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTT
T ss_pred CCCCEEEcC--------CCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcC
Confidence 345777777 55555553 236777788888888877776665 5777788888888877633333345777
Q ss_pred ccCCCeeecCCccccccCcccCCCCCCcccCC
Q 003773 503 LMNMRSLMNGQTEKLKYLPIGISRLTSLRTLE 534 (796)
Q Consensus 503 l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 534 (796)
+++|++|++++|......|..+..+++|+.|+
T Consensus 104 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 135 (220)
T 2v70_A 104 LESLKTLMLRSNRITCVGNDSFIGLSSVRLLS 135 (220)
T ss_dssp CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred CcCCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence 78888888877744444456677777777765
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.00 E-value=3.5e-10 Score=125.85 Aligned_cols=133 Identities=19% Similarity=0.283 Sum_probs=85.8
Q ss_pred hHHHhhhcCcccceee-ecccccCCCcccccccccc------cccC--ccccceEecCCCCccccchhhhccCCccEeec
Q 003773 417 ILVELFSKVACLRALV-IRQWFVPLDDQNFIREIPE------NIGK--LIHLKYLNLSELCIERLPETLCELYNLQKLAV 487 (796)
Q Consensus 417 ~~~~~~~~~~~L~~L~-l~~~~~~~~~~~~~~~lp~------~~~~--l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l 487 (796)
.++..+..+++|+.|+ ++ .+.+..++. .+.. ...|++|++++|.++.+|. ++++++|++|+|
T Consensus 400 ~~~~~l~~l~~L~~L~~l~--------~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~L 470 (567)
T 1dce_A 400 YEKETLQYFSTLKAVDPMR--------AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDL 470 (567)
T ss_dssp GHHHHHHHHHHHHHHCGGG--------HHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEEC
T ss_pred CCHHHHHHHHhcccCcchh--------hcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeec
Confidence 3455677788888888 44 332222211 1111 1257888888888888886 888888888888
Q ss_pred cccccccccchhhccccCCCeeecCCccccccCcccCCCCCCcccCCCeeeCCccCCCC-cccccccccCCCCCcceecC
Q 003773 488 RWCTNLRELPAGIGKLMNMRSLMNGQTEKLKYLPIGISRLTSLRTLEKFVVGGGVDGGS-TCRLESLKNLQLLRECRVEG 566 (796)
Q Consensus 488 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~-~~~l~~l~~L~~L~~l~l~~ 566 (796)
++|. +..+|..++.+++|++|++++| .++.+| .++.+++|++|+ ..+|...... +..+. .+++|+.+.+.+
T Consensus 471 s~N~-l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~--Ls~N~l~~~~~p~~l~---~l~~L~~L~L~~ 542 (567)
T 1dce_A 471 SHNR-LRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELL--LCNNRLQQSAAIQPLV---SCPRLVLLNLQG 542 (567)
T ss_dssp CSSC-CCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEE--CCSSCCCSSSTTGGGG---GCTTCCEEECTT
T ss_pred Cccc-ccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEE--CCCCCCCCCCCcHHHh---cCCCCCEEEecC
Confidence 8876 5588888888888888888888 555677 788888888886 3444443322 33443 444444444443
No 140
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.00 E-value=5.3e-10 Score=117.84 Aligned_cols=112 Identities=20% Similarity=0.301 Sum_probs=67.2
Q ss_pred chhhHHHhhh-cCcccceeeecccccCCCccccccccc-ccccCccccceEecCCCCccccch-hhhccCCccEeecccc
Q 003773 414 NGSILVELFS-KVACLRALVIRQWFVPLDDQNFIREIP-ENIGKLIHLKYLNLSELCIERLPE-TLCELYNLQKLAVRWC 490 (796)
Q Consensus 414 ~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~ 490 (796)
+..++...|. ++++|+.|+|+ ++.+..++ ..+..+++|++|+|++|.++.+|. .+.++++|++|+|++|
T Consensus 51 l~~l~~~~~~~~l~~L~~L~L~--------~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 122 (361)
T 2xot_A 51 LSRLRAEWTPTRLTNLHSLLLS--------HNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN 122 (361)
T ss_dssp CCEECTTSSSSCCTTCCEEECC--------SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCccChhhhhhcccccCEEECC--------CCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCC
Confidence 3444444454 66777777776 55555553 456667777777777777766654 4666777777777766
Q ss_pred ccccccchhhccccCCCeeecCCccccccCcccC----CCCCCcccCC
Q 003773 491 TNLRELPAGIGKLMNMRSLMNGQTEKLKYLPIGI----SRLTSLRTLE 534 (796)
Q Consensus 491 ~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i----~~l~~L~~L~ 534 (796)
......|..|..+++|++|++++| .+..+|..+ ..+++|+.|+
T Consensus 123 ~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 123 HIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEE
T ss_pred cccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEE
Confidence 633333556667777777777776 445555443 3455555554
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.95 E-value=5e-10 Score=104.63 Aligned_cols=101 Identities=22% Similarity=0.267 Sum_probs=82.3
Q ss_pred hhcCcccceeeecccccCCCcccccccccccccCcc-ccceEecCCCCccccchhhhccCCccEeeccccccccccchhh
Q 003773 422 FSKVACLRALVIRQWFVPLDDQNFIREIPENIGKLI-HLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGI 500 (796)
Q Consensus 422 ~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~-~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 500 (796)
+..+.+|+.|+++ ++.+..+|. +..+. +|++|++++|.++.+ ..++++++|++|++++|. +..+|..+
T Consensus 15 ~~~~~~L~~L~l~--------~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~ 83 (176)
T 1a9n_A 15 YTNAVRDRELDLR--------GYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGL 83 (176)
T ss_dssp EECTTSCEEEECT--------TSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCH
T ss_pred cCCcCCceEEEee--------CCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcch
Confidence 4567889999999 566666755 55555 999999999999988 578999999999999987 66777554
Q ss_pred -ccccCCCeeecCCccccccCcc--cCCCCCCcccCC
Q 003773 501 -GKLMNMRSLMNGQTEKLKYLPI--GISRLTSLRTLE 534 (796)
Q Consensus 501 -~~l~~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~ 534 (796)
..+++|++|++++| .+..+|. .++.+++|+.|+
T Consensus 84 ~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 84 DQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp HHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEE
T ss_pred hhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEE
Confidence 89999999999999 5677776 677788888776
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.95 E-value=8.9e-10 Score=104.44 Aligned_cols=100 Identities=19% Similarity=0.201 Sum_probs=52.5
Q ss_pred ccceeeecccccCCCccccccccccc--ccCccccceEecCCCCcccc-chhhhccCCccEeeccccccccccchhhccc
Q 003773 427 CLRALVIRQWFVPLDDQNFIREIPEN--IGKLIHLKYLNLSELCIERL-PETLCELYNLQKLAVRWCTNLRELPAGIGKL 503 (796)
Q Consensus 427 ~L~~L~l~~~~~~~~~~~~~~~lp~~--~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l 503 (796)
.|+.|+++ ++.+..++.. ++.+++|++|++++|.++.+ |..+.++++|++|+|++|......|..+..+
T Consensus 30 ~l~~L~l~--------~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 101 (192)
T 1w8a_A 30 HTTELLLN--------DNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGL 101 (192)
T ss_dssp TCSEEECC--------SCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTC
T ss_pred CCCEEECC--------CCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCC
Confidence 45555555 4444444432 55556666666666655544 4455556666666666555322223335555
Q ss_pred cCCCeeecCCccccccCcccCCCCCCcccCC
Q 003773 504 MNMRSLMNGQTEKLKYLPIGISRLTSLRTLE 534 (796)
Q Consensus 504 ~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 534 (796)
++|++|++++|......|..++.+++|+.|+
T Consensus 102 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 102 HQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 6666666665543334455555555555554
No 143
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.94 E-value=6.5e-09 Score=104.77 Aligned_cols=168 Identities=9% Similarity=-0.023 Sum_probs=104.2
Q ss_pred ccccHHHHHHHhcc---cCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc------cCCeEEEEEeCCcCCHHHHHHH
Q 003773 17 IEGLDDDNTLALAS---SEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKR------KFDIVIWVCVSDAFEEIRIAKA 87 (796)
Q Consensus 17 ~vGr~~~~~~l~~~---~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~------~f~~~~wv~~~~~~~~~~~~~~ 87 (796)
+.|||+|++.+... ....+..+.+.|+|++|+|||++|++++++..... .| .+++|.+....+...++..
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHHHH
Confidence 89999999954433 22234567889999999999999999998743211 12 3677888888888999999
Q ss_pred HHHHhccCCCCCccHHHHHHHHHHHh---CCceEEEEEeCCCCCCccChhhHhhhccCC-CCCc--EEEEEecchhh---
Q 003773 88 ILEVLDKSASSLGEFQSLMQQTQESI---RGKKFFLVLDDVWDGDFKKWDPFFSCLKNG-HHES--KILITTRDRSV--- 158 (796)
Q Consensus 88 i~~~l~~~~~~~~~~~~~~~~~~~~l---~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~-~~gs--~iiiTsr~~~~--- 158 (796)
|++++.+.........+....+.+.+ .+++++++||+++.-. .-+.+...+.+. ...+ -||.++...+.
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHH
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccchh
Confidence 99999654322222233333333333 4678999999996543 333444433211 1222 23444443221
Q ss_pred --hhccC---ccceEEccCCChHhHHHHHHHHhh
Q 003773 159 --ALQMG---SIDIISVKELGEEECWSLFKQVAF 187 (796)
Q Consensus 159 --~~~~~---~~~~~~l~~l~~~e~~~lf~~~~~ 187 (796)
..... ....+.+.+++.+|-.+++.+++.
T Consensus 179 ~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 179 QINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 11110 124799999999999999988763
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.93 E-value=2.2e-09 Score=101.59 Aligned_cols=72 Identities=19% Similarity=0.255 Sum_probs=32.8
Q ss_pred ccccccccccccCccccceEecCCCCccccch-hhhccCCccEeeccccccccccchhhccccCCCeeecCCc
Q 003773 443 QNFIREIPENIGKLIHLKYLNLSELCIERLPE-TLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQT 514 (796)
Q Consensus 443 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~ 514 (796)
++.+..+|..+..+++|++|++++|.++.++. .+.++++|++|+|++|......|..|..+++|++|++++|
T Consensus 40 ~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 40 GNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp SSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCC
Confidence 33444444444455555555555555444432 3444555555555544422222223444555555555544
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.93 E-value=1.5e-09 Score=102.87 Aligned_cols=96 Identities=20% Similarity=0.197 Sum_probs=80.3
Q ss_pred ceeeecccccCCCcccccccccccccCccccceEecCCCCccccchh--hhccCCccEeeccccccccccchhhccccCC
Q 003773 429 RALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPET--LCELYNLQKLAVRWCTNLRELPAGIGKLMNM 506 (796)
Q Consensus 429 ~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~--i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 506 (796)
++++++ ++.+..+|..+.. +|++|++++|.++.+|.. ++++++|++|+|++|......|..|..+++|
T Consensus 11 ~~l~~s--------~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 80 (192)
T 1w8a_A 11 TTVDCT--------GRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80 (192)
T ss_dssp TEEECT--------TSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CEEEcC--------CCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC
Confidence 788888 7778888887654 899999999999988864 8999999999999988555557889999999
Q ss_pred CeeecCCccccccCcccCCCCCCcccCC
Q 003773 507 RSLMNGQTEKLKYLPIGISRLTSLRTLE 534 (796)
Q Consensus 507 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 534 (796)
++|++++|......|..++.+++|++|+
T Consensus 81 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 81 QELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp CEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 9999999955444455588888888886
No 146
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.90 E-value=4.7e-09 Score=109.19 Aligned_cols=193 Identities=13% Similarity=-0.006 Sum_probs=117.1
Q ss_pred cccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccC-CeEEEEEeCCcCCHHHHHHHH
Q 003773 10 TARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKF-DIVIWVCVSDAFEEIRIAKAI 88 (796)
Q Consensus 10 ~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i 88 (796)
.|..-.+++|+++.++.+......+ ..+.+.|+|++|+|||++|+.+++..... .+ ..++.+..+.......+...+
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~la~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 97 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKTG-SMPHLLFAGPPGVGKTTAALALARELFGE-NWRHNFLELNASDERGINVIREKV 97 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHT-CCCEEEEESCTTSSHHHHHHHHHHHHHGG-GHHHHEEEEETTCHHHHHTTHHHH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHcC-CCCeEEEECcCCCCHHHHHHHHHHHhcCC-cccCceEEeeccccCchHHHHHHH
Confidence 4555678999999999776655433 33348999999999999999998762111 11 123344433211111111111
Q ss_pred HHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecchhh-hhcc-Cccc
Q 003773 89 LEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDRSV-ALQM-GSID 166 (796)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~~-~~~~-~~~~ 166 (796)
....... ....+++.++|+|+++.........+...+.....++++|+||..... ...+ ....
T Consensus 98 ~~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 98 KEFARTK---------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 162 (327)
T ss_dssp HHHHHSC---------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred HHHHhhC---------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCc
Confidence 1000000 011256889999999776555566676666555567788888876431 1111 1234
Q ss_pred eEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHHHHH
Q 003773 167 IISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLL 223 (796)
Q Consensus 167 ~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 223 (796)
.+++.+++.++..+++...+...+. .-..+....+++.++|.|..+..+...+
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 163 IFRFRPLRDEDIAKRLRYIAENEGL----ELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTC----EECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 7899999999999999887643222 1224567889999999998655444433
No 147
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.90 E-value=3.1e-09 Score=100.64 Aligned_cols=86 Identities=20% Similarity=0.255 Sum_probs=54.7
Q ss_pred HhhhcCcccceeeecccccCCCccccccccc-ccccCccccceEecCCCCccccch-hhhccCCccEeeccccccccccc
Q 003773 420 ELFSKVACLRALVIRQWFVPLDDQNFIREIP-ENIGKLIHLKYLNLSELCIERLPE-TLCELYNLQKLAVRWCTNLRELP 497 (796)
Q Consensus 420 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp 497 (796)
..|.++++|+.|+|+ ++.+..++ ..|..+++|++|+|++|.++.+|. .+.++++|++|+|++|. +..+|
T Consensus 48 ~~~~~l~~L~~L~Ls--------~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~ 118 (193)
T 2wfh_A 48 KELSNYKHLTLIDLS--------NNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVP 118 (193)
T ss_dssp GGGGGCTTCCEEECC--------SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCC
T ss_pred HHhhcccCCCEEECC--------CCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCC-CCeeC
Confidence 346666777777776 45555553 446667777777777777666654 46667777777777665 44454
Q ss_pred h-hhccccCCCeeecCCc
Q 003773 498 A-GIGKLMNMRSLMNGQT 514 (796)
Q Consensus 498 ~-~~~~l~~L~~L~l~~~ 514 (796)
. .+..+++|++|++++|
T Consensus 119 ~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 119 EGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp TTTTTTCTTCCEEECCSS
T ss_pred hhhhhcCccccEEEeCCC
Confidence 4 3566677777777666
No 148
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.89 E-value=3.6e-09 Score=109.78 Aligned_cols=184 Identities=15% Similarity=0.067 Sum_probs=109.9
Q ss_pred ccccccCcccccHHHHHHHhcccC----CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHH
Q 003773 9 TTARLKLQIEGLDDDNTLALASSE----QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRI 84 (796)
Q Consensus 9 ~~~~~~~~~vGr~~~~~~l~~~~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 84 (796)
..|....+|||++..++.+..... .....+.|.|+|++|+|||++|+++++.. .. ..+++.+........+
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~--~~---~~~~~~~~~~~~~~~l 80 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL--GV---NLRVTSGPAIEKPGDL 80 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH--TC---CEEEECTTTCCSHHHH
T ss_pred cCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh--CC---CEEEEeccccCChHHH
Confidence 345566789999998885443321 11234578899999999999999998752 22 2344444332222221
Q ss_pred HHHHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCC------------------CC
Q 003773 85 AKAILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGH------------------HE 146 (796)
Q Consensus 85 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~------------------~g 146 (796)
. ..+ ... ..++.+|++|+++.........+...+.... +.
T Consensus 81 ~----~~l-----------------~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 81 A----AIL-----------------ANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp H----HHH-----------------TTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred H----HHH-----------------HHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 1 111 110 1345689999996654333344443332210 23
Q ss_pred cEEEEEecchhhh-hcc-Cc-cceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHHHHH
Q 003773 147 SKILITTRDRSVA-LQM-GS-IDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIGNLL 223 (796)
Q Consensus 147 s~iiiTsr~~~~~-~~~-~~-~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 223 (796)
.++|.||...... ..+ .. ...+.+.+++.+|..+++...+..... .-..+....+++.++|+|..+..+...+
T Consensus 139 ~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV----RITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC----CCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 4566666643211 111 11 258999999999999999887743222 1224567889999999998887766554
No 149
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.87 E-value=1.4e-08 Score=107.78 Aligned_cols=201 Identities=14% Similarity=0.125 Sum_probs=117.2
Q ss_pred ccccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHH
Q 003773 9 TTARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAI 88 (796)
Q Consensus 9 ~~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 88 (796)
..|....+++||++.++.+......+.....+.|+|++|+||||+|+.+++.......+. ...+... .. ...+
T Consensus 10 ~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~---~~~~~~~---~~-~~~~ 82 (373)
T 1jr3_A 10 WRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---ATPCGVC---DN-CREI 82 (373)
T ss_dssp TCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC---SSCCSSS---HH-HHHH
T ss_pred hCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---CCCCccc---HH-HHHH
Confidence 345666789999999997766554333345788999999999999999987632211110 0000000 00 0011
Q ss_pred HHH-----h--ccC-CCCCccHHHHHHHHHHH-hCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecchh-h
Q 003773 89 LEV-----L--DKS-ASSLGEFQSLMQQTQES-IRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDRS-V 158 (796)
Q Consensus 89 ~~~-----l--~~~-~~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~-~ 158 (796)
... + ... .....+..+....+... ..+++.++|+||++..+......+...+........+|++|.... +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 162 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGS
T ss_pred hccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 100 0 000 01112233322222111 135678999999976555556667666665555677777776532 1
Q ss_pred hhc-cCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHH
Q 003773 159 ALQ-MGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIG 220 (796)
Q Consensus 159 ~~~-~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 220 (796)
... ......+++.+++.++..+++...+...+.. -..+.+..+++.++|.|..+..+.
T Consensus 163 ~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~----~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 163 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA----HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC----BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred cHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 111 1224689999999999999998765322111 124557789999999998776554
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.86 E-value=5.3e-11 Score=113.75 Aligned_cols=102 Identities=23% Similarity=0.335 Sum_probs=75.5
Q ss_pred hhhcCcccceeeecccccCCCcccccccccccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccchhh
Q 003773 421 LFSKVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPAGI 500 (796)
Q Consensus 421 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~ 500 (796)
.+..+++|++|+++ ++.+..+| .+..+++|++|++++|.++.+|..+..+++|++|++++|. +..+| .+
T Consensus 43 ~~~~l~~L~~L~ls--------~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~ 111 (198)
T 1ds9_A 43 TLSTLKACKHLALS--------TNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GI 111 (198)
T ss_dssp HHHHTTTCSEEECS--------EEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HH
T ss_pred HHhcCCCCCEEECC--------CCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-cc
Confidence 46778888888888 56666677 7777888888888888888888777777888888888775 55566 57
Q ss_pred ccccCCCeeecCCccccccCcc--cCCCCCCcccCC
Q 003773 501 GKLMNMRSLMNGQTEKLKYLPI--GISRLTSLRTLE 534 (796)
Q Consensus 501 ~~l~~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~ 534 (796)
..+++|++|++++| .+..+|. .+..+++|++|+
T Consensus 112 ~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 112 EKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp HHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEE
T ss_pred ccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEE
Confidence 77888888888887 4454443 566777777775
No 151
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.81 E-value=3.9e-08 Score=101.77 Aligned_cols=187 Identities=12% Similarity=-0.001 Sum_probs=114.9
Q ss_pred cccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCC-eEEEEEeCCcCCHHHHHHHH
Q 003773 10 TARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFD-IVIWVCVSDAFEEIRIAKAI 88 (796)
Q Consensus 10 ~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 88 (796)
.|..-.+++|++..++.+......+ ..+.+.|+|++|+|||++|+.+++.... ..+. .++.++.+....
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKt~la~~l~~~l~~-~~~~~~~~~~~~~~~~~-------- 81 (319)
T 2chq_A 12 RPRTLDEVVGQDEVIQRLKGYVERK-NIPHLLFSGPPGTGKTATAIALARDLFG-ENWRDNFIEMNASDERG-------- 81 (319)
T ss_dssp SCSSGGGSCSCHHHHHHHHTTTTTT-CCCCEEEESSSSSSHHHHHHHHHHHHHT-TCHHHHCEEEETTSTTC--------
T ss_pred CCCCHHHHhCCHHHHHHHHHHHhCC-CCCeEEEECcCCcCHHHHHHHHHHHhcC-CcccCCeEEEeCccccC--------
Confidence 3555677999999999887776543 3334889999999999999999876211 1111 123334332111
Q ss_pred HHHhccCCCCCccHHHHHHHHHHH--h-CCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecchh-hhhc-cC
Q 003773 89 LEVLDKSASSLGEFQSLMQQTQES--I-RGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDRS-VALQ-MG 163 (796)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~~~~~~~--l-~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~-~~~~-~~ 163 (796)
.....+......+. + .+++.++|+|+++.........+...+.....++++|+||.... +... ..
T Consensus 82 ----------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 82 ----------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp ----------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred ----------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 11111111111111 1 25688999999976554445556666655556778888887543 1111 12
Q ss_pred ccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHH
Q 003773 164 SIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIG 220 (796)
Q Consensus 164 ~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 220 (796)
....+++.+++.++..+++...+...+.. -..+....+++.++|.+..+....
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~----i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVK----ITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCCC----BCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 23589999999999999998876432221 124557788899999987654433
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.77 E-value=2.6e-08 Score=103.43 Aligned_cols=223 Identities=13% Similarity=0.062 Sum_probs=129.5
Q ss_pred ccccceEecCCCCccccch-hhhccCCccEeeccccccccccchhhccccCCCeeecCCccccccCcccCCCCCCcccCC
Q 003773 456 LIHLKYLNLSELCIERLPE-TLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQTEKLKYLPIGISRLTSLRTLE 534 (796)
Q Consensus 456 l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 534 (796)
|.+|+.|+|++ .++.++. .|.+|.+|+.|++.+|.....-+..|..+.++..+......... ....+...
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~-------~~~~i~~~- 170 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYR-------FKNRWEHF- 170 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHH-------TSTTTTTS-
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhh-------cccccccc-
Confidence 99999999999 8888876 58899999999999876433334456666666555554321100 00111111
Q ss_pred CeeeCCccCCCCcccccccccCCCCCcceecCCCCCCChhhhhhccccccccccceEEEeccccCCCCCcCccCchhHHH
Q 003773 535 KFVVGGGVDGGSTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQ 614 (796)
Q Consensus 535 ~~~~~~~~~~~~~~~l~~l~~L~~L~~l~l~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 614 (796)
.+..+..|+. .+.+.. ...+.......-....++..+.+...-. ...
T Consensus 171 --------------~f~~~~~L~~--~i~~~~---~~~l~~~~~~~~~~~~~~~~l~~~~~l~--------------~~~ 217 (329)
T 3sb4_A 171 --------------AFIEGEPLET--TIQVGA---MGKLEDEIMKAGLQPRDINFLTIEGKLD--------------NAD 217 (329)
T ss_dssp --------------CEEESCCCEE--EEEECT---TCCHHHHHHHTTCCGGGCSEEEEEECCC--------------HHH
T ss_pred --------------ccccccccce--eEEecC---CCcHHHHHhhcccCccccceEEEeeeec--------------HHH
Confidence 1111111110 011111 1112222211222345555666554320 111
Q ss_pred HHhhCCCCCCCcEEEEeecCCCCCCch-hhhccCCcEEEEcCCCCCCCCCc--cccc-ccc-ceeccccccceEeCcccc
Q 003773 615 LLEALQPPLNVEELWILFYGGNIFPKW-LTLLTNLRELKLFSCVNCEHLPP--LGKL-LLE-KLTLYNLISVKRVGDEFL 689 (796)
Q Consensus 615 ~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~L~~~~~~~~lp~--l~~l-~L~-~L~l~~~~~l~~~~~~~~ 689 (796)
+......+++|+++++.++....+|.. +..+++|++|+|.++ +..++. +..+ +|+ .+.+.+ .+..++...
T Consensus 218 ~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~a- 292 (329)
T 3sb4_A 218 FKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGA- 292 (329)
T ss_dssp HHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTT-
T ss_pred HHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhh-
Confidence 111112357899999998888877765 458999999999987 666666 6777 798 888876 466665432
Q ss_pred CCCCCCccCCCCCCcccCCCccceeeccccccccccccccccccccCCCCccceeec
Q 003773 690 GIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEI 746 (796)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l 746 (796)
+.++++|+.+++.+. +++. ..+..|.++++|+.|..
T Consensus 293 ---------------F~~c~~L~~l~l~~n-~i~~-----I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 293 ---------------FMGCDNLRYVLATGD-KITT-----LGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ---------------TTTCTTEEEEEECSS-CCCE-----ECTTTTCTTCCCCEEEC
T ss_pred ---------------hhCCccCCEEEeCCC-ccCc-----cchhhhcCCcchhhhcc
Confidence 347889999976543 3333 33567888999998863
No 153
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.75 E-value=2e-08 Score=93.74 Aligned_cols=85 Identities=28% Similarity=0.477 Sum_probs=40.9
Q ss_pred hhhcCcccceeeecccccCCCccccccccccc-ccCccccceEecCCCCccccchh-hhccCCccEeeccccccccccch
Q 003773 421 LFSKVACLRALVIRQWFVPLDDQNFIREIPEN-IGKLIHLKYLNLSELCIERLPET-LCELYNLQKLAVRWCTNLRELPA 498 (796)
Q Consensus 421 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~ 498 (796)
.|.++++|++|+++ ++.+..+|.. ++.+++|++|++++|.++.+|.. +.++++|++|++++|. +..+|.
T Consensus 47 ~~~~l~~L~~L~l~--------~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~ 117 (177)
T 2o6r_A 47 VFDKLTQLTKLSLS--------QNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPD 117 (177)
T ss_dssp TTTTCTTCSEEECC--------SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCT
T ss_pred HhcCcccccEEECC--------CCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCc-ceEeCH
Confidence 34445555555555 3334444322 34555555555555555544442 3455555555555543 333433
Q ss_pred h-hccccCCCeeecCCc
Q 003773 499 G-IGKLMNMRSLMNGQT 514 (796)
Q Consensus 499 ~-~~~l~~L~~L~l~~~ 514 (796)
. +..+++|++|++++|
T Consensus 118 ~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 118 GIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp TTTTTCTTCCEEECCSS
T ss_pred HHhcCCcccCEEEecCC
Confidence 2 344555555555555
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.75 E-value=2e-08 Score=93.22 Aligned_cols=88 Identities=28% Similarity=0.388 Sum_probs=43.9
Q ss_pred ccccccccccccCccccceEecCCCCcccc-chhhhccCCccEeeccccccccccchh-hccccCCCeeecCCccccccC
Q 003773 443 QNFIREIPENIGKLIHLKYLNLSELCIERL-PETLCELYNLQKLAVRWCTNLRELPAG-IGKLMNMRSLMNGQTEKLKYL 520 (796)
Q Consensus 443 ~~~~~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~ 520 (796)
++.+..+|..+. ++|++|+|++|.++.+ |..+.++++|++|+|++|. +..+|.. |..+++|++|++++| .+..+
T Consensus 21 ~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N-~l~~l 96 (174)
T 2r9u_A 21 NIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN-HLKSI 96 (174)
T ss_dssp SSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCC
T ss_pred CCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC-cccee
Confidence 444455554442 4555555555555544 2345555555555555543 4444433 345555555555555 33344
Q ss_pred ccc-CCCCCCcccCC
Q 003773 521 PIG-ISRLTSLRTLE 534 (796)
Q Consensus 521 p~~-i~~l~~L~~L~ 534 (796)
|.. ++.+++|+.|+
T Consensus 97 ~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 97 PRGAFDNLKSLTHIY 111 (174)
T ss_dssp CTTTTTTCTTCSEEE
T ss_pred CHHHhccccCCCEEE
Confidence 433 45555555554
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.74 E-value=1.3e-08 Score=94.46 Aligned_cols=89 Identities=18% Similarity=0.261 Sum_probs=74.2
Q ss_pred cccceeeecccccCCCcccccccc-cccccCccccceEecCCCCccccchh-hhccCCccEeeccccccccccchh-hcc
Q 003773 426 ACLRALVIRQWFVPLDDQNFIREI-PENIGKLIHLKYLNLSELCIERLPET-LCELYNLQKLAVRWCTNLRELPAG-IGK 502 (796)
Q Consensus 426 ~~L~~L~l~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~-~~~ 502 (796)
+.|++|+|+ ++.+..+ |..++.+++|++|+|++|.++.+|.. +.++++|++|+|++|. +..+|.. +..
T Consensus 33 ~~L~~L~Ls--------~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~ 103 (174)
T 2r9u_A 33 TDKQRLWLN--------NNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDN 103 (174)
T ss_dssp TTCSEEECC--------SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred CCCcEEEeC--------CCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCHHHhcc
Confidence 689999999 6667766 67789999999999999999999876 5899999999999987 6677765 899
Q ss_pred ccCCCeeecCCccccccCcccC
Q 003773 503 LMNMRSLMNGQTEKLKYLPIGI 524 (796)
Q Consensus 503 l~~L~~L~l~~~~~~~~~p~~i 524 (796)
+++|++|++++| .+...+..+
T Consensus 104 l~~L~~L~L~~N-~~~c~~~~~ 124 (174)
T 2r9u_A 104 LKSLTHIYLYNN-PWDCECRDI 124 (174)
T ss_dssp CTTCSEEECCSS-CBCTTBGGG
T ss_pred ccCCCEEEeCCC-CcccccccH
Confidence 999999999999 444444433
No 156
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.73 E-value=1.1e-10 Score=111.50 Aligned_cols=104 Identities=21% Similarity=0.218 Sum_probs=86.1
Q ss_pred hhhcCcccceeeecccccCCCcccccccccccccCccccceEecCCCCccccchhhhccCCccEeeccccccccccch--
Q 003773 421 LFSKVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERLPETLCELYNLQKLAVRWCTNLRELPA-- 498 (796)
Q Consensus 421 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-- 498 (796)
.+.++++|++|+++ ++.+..+|..+..+++|++|++++|.++.+| .+.++++|++|++++|. +..+|.
T Consensus 65 ~~~~l~~L~~L~l~--------~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~ 134 (198)
T 1ds9_A 65 SLSGMENLRILSLG--------RNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEID 134 (198)
T ss_dssp CHHHHTTCCEEEEE--------EEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHH
T ss_pred ccccCCCCCEEECC--------CCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCc-CCchhHHH
Confidence 57889999999999 7777789988888999999999999999988 69999999999999987 665554
Q ss_pred hhccccCCCeeecCCccccccCccc----------CCCCCCcccCC
Q 003773 499 GIGKLMNMRSLMNGQTEKLKYLPIG----------ISRLTSLRTLE 534 (796)
Q Consensus 499 ~~~~l~~L~~L~l~~~~~~~~~p~~----------i~~l~~L~~L~ 534 (796)
.+..+++|++|++++|......|.. +..+++|+.|+
T Consensus 135 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 135 KLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred HHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 7899999999999999554444432 56667777665
No 157
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.72 E-value=3e-08 Score=91.66 Aligned_cols=95 Identities=25% Similarity=0.328 Sum_probs=64.6
Q ss_pred cceeeecccccCCCcccccccccccccCccccceEecCCCCcccc-chhhhccCCccEeeccccccccccchh-hccccC
Q 003773 428 LRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIERL-PETLCELYNLQKLAVRWCTNLRELPAG-IGKLMN 505 (796)
Q Consensus 428 L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~ 505 (796)
.+.++++ ++.+..+|..+. ++|++|+|++|.++.+ |..+.++++|++|+|++|. +..+|.. |..+++
T Consensus 11 ~~~l~~s--------~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~ 79 (170)
T 3g39_A 11 GTTVDCS--------GKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQ 79 (170)
T ss_dssp TTEEECT--------TSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTT
T ss_pred CCEEEeC--------CCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCC
Confidence 4567777 666667776553 6777777777777766 4457777777777777765 5555543 567777
Q ss_pred CCeeecCCccccccCcc-cCCCCCCcccCC
Q 003773 506 MRSLMNGQTEKLKYLPI-GISRLTSLRTLE 534 (796)
Q Consensus 506 L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~ 534 (796)
|++|++++| .+..+|. .++.+++|+.|+
T Consensus 80 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 80 LTQLSLNDN-QLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEECCCC-ccCEeCHHHhcCCCCCCEEE
Confidence 777777777 4555554 366777777775
No 158
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.69 E-value=4.4e-08 Score=91.41 Aligned_cols=99 Identities=30% Similarity=0.422 Sum_probs=77.8
Q ss_pred cccceeeecccccCCCcccccccccc-cccCccccceEecCCCCccccchh-hhccCCccEeeccccccccccch-hhcc
Q 003773 426 ACLRALVIRQWFVPLDDQNFIREIPE-NIGKLIHLKYLNLSELCIERLPET-LCELYNLQKLAVRWCTNLRELPA-GIGK 502 (796)
Q Consensus 426 ~~L~~L~l~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~-~~~~ 502 (796)
++|+.|+++ ++.+..+|. .++.+++|++|++++|.++.+|.. +.++++|++|++++|. +..+|. .+..
T Consensus 28 ~~l~~L~l~--------~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~ 98 (177)
T 2o6r_A 28 SSATRLELE--------SNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDK 98 (177)
T ss_dssp TTCSEEECC--------SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred CCCcEEEeC--------CCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhhC
Confidence 578889998 555666654 468899999999999999888765 6889999999999887 555554 4688
Q ss_pred ccCCCeeecCCccccccCccc-CCCCCCcccCC
Q 003773 503 LMNMRSLMNGQTEKLKYLPIG-ISRLTSLRTLE 534 (796)
Q Consensus 503 l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~ 534 (796)
+++|++|++++| .++.+|.. +..+++|+.|+
T Consensus 99 l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 99 LTQLKELALDTN-QLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred CcccCEEECcCC-cceEeCHHHhcCCcccCEEE
Confidence 999999999998 55666665 47788888886
No 159
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.61 E-value=2.3e-07 Score=97.49 Aligned_cols=200 Identities=9% Similarity=0.002 Sum_probs=115.1
Q ss_pred cccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccC-CeEEEEEeCCcCCHHHHHHHH
Q 003773 10 TARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKF-DIVIWVCVSDAFEEIRIAKAI 88 (796)
Q Consensus 10 ~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i 88 (796)
.|..-.+++|+++.++.+....... ..+.+.|+|++|+||||+|+.+++.......+ ..++.+..+.......+...+
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKSA-NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKV 110 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTCT-TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhcC-CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHH
Confidence 3555678999999999777665433 22338899999999999999998863211111 123344444333333322222
Q ss_pred HHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecchh-hhhcc-Cccc
Q 003773 89 LEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDRS-VALQM-GSID 166 (796)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~-~~~~~-~~~~ 166 (796)
............... ....-.+++-++++|+++.........+...+.......++|++|.... +...+ ....
T Consensus 111 ~~~~~~~~~~~~~~~-----~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~ 185 (353)
T 1sxj_D 111 KNFARLTVSKPSKHD-----LENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCS 185 (353)
T ss_dssp HHHHHSCCCCCCTTH-----HHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSE
T ss_pred HHHhhhcccccchhh-----cccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCc
Confidence 111111111100000 0011124567999999966554445556655554445567777776432 11111 1134
Q ss_pred eEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHH
Q 003773 167 IISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVI 219 (796)
Q Consensus 167 ~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 219 (796)
.+.+.+++.++..+.+...+...... -..+..+.|++.++|.|..+..+
T Consensus 186 ~i~~~~~~~~~~~~~l~~~~~~~~~~----i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 186 KFRFKALDASNAIDRLRFISEQENVK----CDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCC----CCHHHHHHHHHHTSSCHHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHHhCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 78999999999999998876432211 12456788999999998764433
No 160
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.60 E-value=1e-07 Score=90.37 Aligned_cols=155 Identities=14% Similarity=0.096 Sum_probs=84.5
Q ss_pred ccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc-----cCCeEEEEEeCCcCCHHHHH
Q 003773 11 ARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKR-----KFDIVIWVCVSDAFEEIRIA 85 (796)
Q Consensus 11 ~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-----~f~~~~wv~~~~~~~~~~~~ 85 (796)
+.....++||+++++.+.+.+.. ...+.+.|+|++|+|||++|+.+++...... ....++++++.. +.
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 90 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQR-RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV 90 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------HH
T ss_pred hccccccccchHHHHHHHHHHhc-CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------Hh
Confidence 34566799999999987776543 3345678999999999999999987631110 122344554321 10
Q ss_pred HHHHHHhccCCCCCccHHHHHHHHHHHh--CCceEEEEEeCCCCCC-------ccC-hhhHhhhccCCCCCcEEEEEecc
Q 003773 86 KAILEVLDKSASSLGEFQSLMQQTQESI--RGKKFFLVLDDVWDGD-------FKK-WDPFFSCLKNGHHESKILITTRD 155 (796)
Q Consensus 86 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l--~~~~~LlvlDd~~~~~-------~~~-~~~l~~~~~~~~~gs~iiiTsr~ 155 (796)
.. .............+.+.+ .+++.+|++||++... ... ...+...+.. .+..+|+||..
T Consensus 91 -------~~-~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~~ 160 (195)
T 1jbk_A 91 -------AG-AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTL 160 (195)
T ss_dssp -------TT-TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEECH
T ss_pred -------cc-CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCCH
Confidence 00 000011111112222211 4568899999996532 112 2233322222 23457777765
Q ss_pred hhhhh------c-cCccceEEccCCChHhHHHHH
Q 003773 156 RSVAL------Q-MGSIDIISVKELGEEECWSLF 182 (796)
Q Consensus 156 ~~~~~------~-~~~~~~~~l~~l~~~e~~~lf 182 (796)
..... . ......+.+.+++.++..+++
T Consensus 161 ~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 161 DEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 43211 1 112336888898888876653
No 161
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.52 E-value=3.8e-07 Score=95.77 Aligned_cols=200 Identities=11% Similarity=0.083 Sum_probs=109.7
Q ss_pred cccccCcccccHHHHHHHhccc-CCCCCcEEEEEEcCCCCcHHHHHHHHHcCccc-c-c--cCCe---------------
Q 003773 10 TARLKLQIEGLDDDNTLALASS-EQQKGLRIISLFGLGGIGKTTLAQLAFNNEGV-K-R--KFDI--------------- 69 (796)
Q Consensus 10 ~~~~~~~~vGr~~~~~~l~~~~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~-~--~f~~--------------- 69 (796)
.|..-.+++|+++.++.+.... ..+.... +.|+|+.|+||||+|+.++..... . + .++.
T Consensus 9 rP~~~~~~vg~~~~~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 9 RPKSLNALSHNEELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp CCCSGGGCCSCHHHHHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred CCCCHHHhcCCHHHHHHHHHHHhhCCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 4666678999999999887766 4333334 899999999999999988773110 0 0 0110
Q ss_pred -----EEEEEeCCcC-CHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCC
Q 003773 70 -----VIWVCVSDAF-EEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNG 143 (796)
Q Consensus 70 -----~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~ 143 (796)
.+.+..+... ......+++++.+..... ..... .+ ..+.+++-++|+|++...+......+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ----VDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcc----ccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 1111111000 000011122222111000 00000 00 002346779999999775555555666666554
Q ss_pred CCCcEEEEEecchh-hhhcc-CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcch-hHHHHHHHHhcCCCchhHHHHH
Q 003773 144 HHESKILITTRDRS-VALQM-GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKL-EPIGRKIACKCKGLPLAAKVIG 220 (796)
Q Consensus 144 ~~gs~iiiTsr~~~-~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~-~~~~~~i~~~~~g~PLal~~~~ 220 (796)
..+..+|++|.... +...+ .....+++.+++.++..+.+.+.+...+.. -. ++.+..|++.++|.+..+..+.
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ----LETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE----ECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC----CCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 45677888887632 21111 223689999999999999998876422211 11 3456788899999886554443
No 162
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.51 E-value=9.8e-08 Score=94.21 Aligned_cols=176 Identities=11% Similarity=0.056 Sum_probs=99.7
Q ss_pred cCcccccH---HHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHH
Q 003773 14 KLQIEGLD---DDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILE 90 (796)
Q Consensus 14 ~~~~vGr~---~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 90 (796)
-.+|+|++ ..++.+..... ....+.+.|+|++|+|||++|+.+++.. ......+.|+.+...... +.+
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ll~G~~G~GKT~la~~l~~~~--~~~~~~~~~~~~~~~~~~------~~~ 97 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAAS-GDGVQAIYLWGPVKSGRTHLIHAACARA--NELERRSFYIPLGIHASI------STA 97 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHH-TCSCSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEGGGGGGS------CGG
T ss_pred hhhccCCCCCHHHHHHHHHHHh-CCCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEHHHHHHH------HHH
Confidence 35688743 33444433322 2245688899999999999999998863 222334667765432110 000
Q ss_pred HhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccC--hhhHhhhccCC-CCC-cEEEEEecchh---------
Q 003773 91 VLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKK--WDPFFSCLKNG-HHE-SKILITTRDRS--------- 157 (796)
Q Consensus 91 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~--~~~l~~~~~~~-~~g-s~iiiTsr~~~--------- 157 (796)
.+ +.+ .++.++|+||++...... .+.+...+... ..+ .++|+||+...
T Consensus 98 ~~------------------~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 158 (242)
T 3bos_A 98 LL------------------EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPD 158 (242)
T ss_dssp GG------------------TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHH
T ss_pred HH------------------Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhh
Confidence 00 011 345789999996543222 23333332211 112 24888877422
Q ss_pred hhhccCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHHH
Q 003773 158 VALQMGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIGN 221 (796)
Q Consensus 158 ~~~~~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~ 221 (796)
+...+.....+++.+++.++..+++...+...+. .-..+....+++.++|.+-.+..+..
T Consensus 159 l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 159 LVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL----QLPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp HHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC----CCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 1111111268999999999999999887642221 11245677889999998876655433
No 163
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.51 E-value=1.7e-07 Score=86.60 Aligned_cols=81 Identities=20% Similarity=0.312 Sum_probs=69.2
Q ss_pred cccceeeecccccCCCcccccccc-cccccCccccceEecCCCCccccchh-hhccCCccEeeccccccccccch-hhcc
Q 003773 426 ACLRALVIRQWFVPLDDQNFIREI-PENIGKLIHLKYLNLSELCIERLPET-LCELYNLQKLAVRWCTNLRELPA-GIGK 502 (796)
Q Consensus 426 ~~L~~L~l~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~-~~~~ 502 (796)
+.|++|+|+ ++.+..+ |..++.+++|++|+|++|.++.+|.. +.++++|++|+|++|. +..+|. .+..
T Consensus 30 ~~l~~L~L~--------~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~ 100 (170)
T 3g39_A 30 TTTQVLYLY--------DNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDN 100 (170)
T ss_dssp TTCSEEECC--------SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred CCCcEEEcC--------CCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcC
Confidence 678999999 6777776 66789999999999999999988875 5899999999999987 666665 5889
Q ss_pred ccCCCeeecCCcc
Q 003773 503 LMNMRSLMNGQTE 515 (796)
Q Consensus 503 l~~L~~L~l~~~~ 515 (796)
+++|++|++++|.
T Consensus 101 l~~L~~L~L~~N~ 113 (170)
T 3g39_A 101 LKSLTHIWLLNNP 113 (170)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCCCCEEEeCCCC
Confidence 9999999999984
No 164
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.50 E-value=3.3e-06 Score=89.48 Aligned_cols=120 Identities=9% Similarity=0.138 Sum_probs=71.9
Q ss_pred hhhhccCCcEEEEcCCCCC----CCCCc--cccc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccce
Q 003773 641 WLTLLTNLRELKLFSCVNC----EHLPP--LGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKS 713 (796)
Q Consensus 641 ~~~~l~~L~~L~L~~~~~~----~~lp~--l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 713 (796)
.+..+++|+.+++.++... ..++. +..+ +|+.+.+.+ .+..++... +.++++|+.
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~a----------------F~~c~~L~~ 327 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGL----------------LGGNRKVTQ 327 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTT----------------TTTCCSCCE
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhh----------------hcCCCCccE
Confidence 3446777777777665322 12333 4445 666666653 355554332 236788888
Q ss_pred eeccccccccccccccccccccCCCCccceeeccCCCCCCCCC-cCCCCC-CCccEEEEcCCCchhhccCCCCcccc
Q 003773 714 LKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLP-DHLLQT-TTLQELSIRGCPILEERYRGEDYHMI 788 (796)
Q Consensus 714 L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~i 788 (796)
+.+.+ +++.+ ....|..+ +|+.|.+.+|. ...++ ..+..+ .+++.|++..+. +..-.....|..-
T Consensus 328 l~lp~--~l~~I-----~~~aF~~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp~~~-~~~y~~a~~W~~f 394 (401)
T 4fdw_A 328 LTIPA--NVTQI-----NFSAFNNT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRVPAES-VEKYKNANGWRDF 394 (401)
T ss_dssp EEECT--TCCEE-----CTTSSSSS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEECGGG-HHHHHHSTTGGGG
T ss_pred EEECc--cccEE-----cHHhCCCC-CCCEEEEcCCC-CcccccccccCCCCCccEEEeCHHH-HHHhhhccchhhh
Confidence 87755 34433 24567788 99999999984 44444 445556 478999998765 2222235667654
No 165
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.49 E-value=1.1e-06 Score=91.57 Aligned_cols=180 Identities=12% Similarity=0.025 Sum_probs=106.2
Q ss_pred ccccccCcccccHHHHHHHhcccC----CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHH
Q 003773 9 TTARLKLQIEGLDDDNTLALASSE----QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRI 84 (796)
Q Consensus 9 ~~~~~~~~~vGr~~~~~~l~~~~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 84 (796)
..|..-++|+|++..++.+..... .....+.|.|+|++|+|||++|+++++. .... .+.+.+........+
T Consensus 23 ~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~---~~~~~~~~~~~~~~~ 97 (338)
T 3pfi_A 23 LRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE--MSAN---IKTTAAPMIEKSGDL 97 (338)
T ss_dssp CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCC---EEEEEGGGCCSHHHH
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEecchhccchhHH
Confidence 345566789999999985554432 1234456889999999999999999875 2222 233333222111111
Q ss_pred HHHHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCC------------------CC
Q 003773 85 AKAILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGH------------------HE 146 (796)
Q Consensus 85 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~------------------~g 146 (796)
...+.. ..+..+|++|+++.........+...+.... +.
T Consensus 98 ---------------------~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3pfi_A 98 ---------------------AAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK 154 (338)
T ss_dssp ---------------------HHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCC
T ss_pred ---------------------HHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCC
Confidence 111111 2456789999997654444444444433221 12
Q ss_pred cEEEEEecchhhhh-cc--CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHHH
Q 003773 147 SKILITTRDRSVAL-QM--GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVIG 220 (796)
Q Consensus 147 s~iiiTsr~~~~~~-~~--~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 220 (796)
..+|.+|....... .+ .....+.+.+++.++..+++.+.+..... .-..+....+++.+.|.|-.+..+.
T Consensus 155 ~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK----TCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----EECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 45666665432111 11 12358999999999999999887643221 1224567788889999996555443
No 166
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.45 E-value=3.2e-07 Score=96.01 Aligned_cols=69 Identities=13% Similarity=0.045 Sum_probs=30.2
Q ss_pred ccccccccccCccccceEecCC-CCccccch-hhhccCCccEeeccccccccccchhhccccCCCeeecCCc
Q 003773 445 FIREIPENIGKLIHLKYLNLSE-LCIERLPE-TLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNGQT 514 (796)
Q Consensus 445 ~~~~lp~~~~~l~~L~~L~l~~-~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~ 514 (796)
.+..+|. +..+.+|++|+|++ |.++.+|. .+++|++|++|+|++|......|..|..|++|++|+|++|
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3444444 44444444444443 44444442 3444444444444444322222223444444444444444
No 167
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.44 E-value=8e-07 Score=97.75 Aligned_cols=197 Identities=15% Similarity=0.118 Sum_probs=109.3
Q ss_pred cccccCcccccHHHHHHHhcccCC----------------CCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEE
Q 003773 10 TARLKLQIEGLDDDNTLALASSEQ----------------QKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWV 73 (796)
Q Consensus 10 ~~~~~~~~vGr~~~~~~l~~~~~~----------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv 73 (796)
.|..-.+++|+++.++.+..++.. .+..+.+.|+|++|+|||++|+++++.. .+ .++.+
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~i 108 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQ 108 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEE
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEE
Confidence 455667899999999966554321 0134689999999999999999998863 22 24455
Q ss_pred EeCCcCCHHHHHHHHHHHhccCCCCCcc-HHHHHHHHHHHhCCceEEEEEeCCCCCCccC---hhhHhhhccCCCCCcEE
Q 003773 74 CVSDAFEEIRIAKAILEVLDKSASSLGE-FQSLMQQTQESIRGKKFFLVLDDVWDGDFKK---WDPFFSCLKNGHHESKI 149 (796)
Q Consensus 74 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~---~~~l~~~~~~~~~gs~i 149 (796)
+++.......+ ...+....... .... ...... .....+++.+|++|+++...... +..+...+... +..|
T Consensus 109 n~s~~~~~~~~-~~~i~~~~~~~-~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~i 182 (516)
T 1sxj_A 109 NASDVRSKTLL-NAGVKNALDNM-SVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPL 182 (516)
T ss_dssp CTTSCCCHHHH-HHTGGGGTTBC-CSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCE
T ss_pred eCCCcchHHHH-HHHHHHHhccc-cHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCE
Confidence 55544443322 22111111100 0000 000000 00123678899999996533222 23444333322 2346
Q ss_pred EEEecchh---hhhccCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCC-chhHHHHHH
Q 003773 150 LITTRDRS---VALQMGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGL-PLAAKVIGN 221 (796)
Q Consensus 150 iiTsr~~~---~~~~~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~~~ 221 (796)
|+++.... +.........+.+.+++.++..+.+...+........ .+....|++.++|. +-++..+..
T Consensus 183 Ili~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~----~~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 183 ILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD----PNVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp EEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC----TTHHHHHHHHTTTCHHHHHHHHTH
T ss_pred EEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 66665432 2111122457999999999999988877643222111 33467889999994 445555543
No 168
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.43 E-value=8.6e-07 Score=95.09 Aligned_cols=186 Identities=15% Similarity=0.100 Sum_probs=104.4
Q ss_pred Cccc-ccHHHHH--HHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHH
Q 003773 15 LQIE-GLDDDNT--LALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEV 91 (796)
Q Consensus 15 ~~~v-Gr~~~~~--~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 91 (796)
+.|| |...... .+............+.|+|++|+||||||+++++.......-..++++++. .+..++...
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~------~~~~~~~~~ 178 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVDS 178 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH------HHHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHHH
Confidence 3466 6544443 232222222225678999999999999999999863211111235565443 233444444
Q ss_pred hccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCc--cChhhHhhhccC-CCCCcEEEEEecch-h--------hh
Q 003773 92 LDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDF--KKWDPFFSCLKN-GHHESKILITTRDR-S--------VA 159 (796)
Q Consensus 92 l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~--~~~~~l~~~~~~-~~~gs~iiiTsr~~-~--------~~ 159 (796)
+... . ...+.+.+..+.-+|++||++.... ...+.+...+.. ...|..||+||... . +.
T Consensus 179 ~~~~-----~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~ 249 (440)
T 2z4s_A 179 MKEG-----K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLV 249 (440)
T ss_dssp HHTT-----C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHH
T ss_pred HHcc-----c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHH
Confidence 4321 1 1223334444667999999965322 122334443322 23466788888762 1 11
Q ss_pred hccCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHH
Q 003773 160 LQMGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVI 219 (796)
Q Consensus 160 ~~~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 219 (796)
..+.....+.+.+++.++..+++.+.+...+... ..+....|++.++|.+-.+.-+
T Consensus 250 sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i----~~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 250 SRFQMGLVAKLEPPDEETRKSIARKMLEIEHGEL----PEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCC----CTTHHHHHHHHCCSCHHHHHHH
T ss_pred hhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHhcCCCHHHHHHH
Confidence 1122235788999999999999988764222111 1344677888999988655443
No 169
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.43 E-value=1.7e-06 Score=89.39 Aligned_cols=183 Identities=13% Similarity=0.028 Sum_probs=106.3
Q ss_pred cccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHH
Q 003773 10 TARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAIL 89 (796)
Q Consensus 10 ~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 89 (796)
.|..-++++|+++.++.+......+....++.+.|++|+|||++|+++++.. . ..++.++.+. .....+...+.
T Consensus 21 rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l--~---~~~~~i~~~~-~~~~~i~~~~~ 94 (324)
T 3u61_B 21 RPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV--N---ADMMFVNGSD-CKIDFVRGPLT 94 (324)
T ss_dssp CCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT--T---EEEEEEETTT-CCHHHHHTHHH
T ss_pred CCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh--C---CCEEEEcccc-cCHHHHHHHHH
Confidence 4556678999999999777665544445688889999999999999998762 1 1244555433 22222221111
Q ss_pred HHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCC-ccChhhHhhhccCCCCCcEEEEEecchhh-hhcc-Cccc
Q 003773 90 EVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGD-FKKWDPFFSCLKNGHHESKILITTRDRSV-ALQM-GSID 166 (796)
Q Consensus 90 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~-~~~~~~l~~~~~~~~~gs~iiiTsr~~~~-~~~~-~~~~ 166 (796)
+..... ...+++.++++|+++... .+..+.+...+.......++|+||....- ...+ ....
T Consensus 95 ~~~~~~----------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~ 158 (324)
T 3u61_B 95 NFASAA----------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCR 158 (324)
T ss_dssp HHHHBC----------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSE
T ss_pred HHHhhc----------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCc
Confidence 111110 012478899999996644 33444555544443455678888876431 1111 1134
Q ss_pred eEEccCCChHhHHHH-------HHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHH
Q 003773 167 IISVKELGEEECWSL-------FKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAK 217 (796)
Q Consensus 167 ~~~l~~l~~~e~~~l-------f~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 217 (796)
.+++++++.++-.++ +...+......... .+....+++.++|.+..+.
T Consensus 159 ~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 159 VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD---MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC---HHHHHHHHHHTCSCTTHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHhCCCCHHHHH
Confidence 799999998874332 33322211111111 2567788888988776433
No 170
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.39 E-value=3.6e-06 Score=90.00 Aligned_cols=184 Identities=18% Similarity=0.149 Sum_probs=103.1
Q ss_pred cccccCcccccHHHH---HHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHH
Q 003773 10 TARLKLQIEGLDDDN---TLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAK 86 (796)
Q Consensus 10 ~~~~~~~~vGr~~~~---~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 86 (796)
.|..-.++||.+..+ ..+..... .+..+.+.|+|++|+||||+|+.+++. ....| ..+... ......+.
T Consensus 21 rP~~l~~ivGq~~~~~~~~~L~~~i~-~~~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f---~~l~a~-~~~~~~ir- 92 (447)
T 3pvs_A 21 RPENLAQYIGQQHLLAAGKPLPRAIE-AGHLHSMILWGPPGTGKTTLAEVIARY--ANADV---ERISAV-TSGVKEIR- 92 (447)
T ss_dssp CCCSTTTCCSCHHHHSTTSHHHHHHH-HTCCCEEEEECSTTSSHHHHHHHHHHH--TTCEE---EEEETT-TCCHHHHH-
T ss_pred CCCCHHHhCCcHHHHhchHHHHHHHH-cCCCcEEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEEec-cCCHHHHH-
Confidence 355667899999888 33433332 234467899999999999999999876 22222 122221 11222211
Q ss_pred HHHHHhccCCCCCccHHHHHHHHH-HHhCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEE-Eecchh--hhhc-
Q 003773 87 AILEVLDKSASSLGEFQSLMQQTQ-ESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILI-TTRDRS--VALQ- 161 (796)
Q Consensus 87 ~i~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iii-Tsr~~~--~~~~- 161 (796)
.+. .... ....+++.+|++|+++.......+.+...+... ...+|. ||.+.. +...
T Consensus 93 ~~~-----------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 93 EAI-----------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HHH-----------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHH
T ss_pred HHH-----------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHH
Confidence 111 1111 112467889999999775544555555555542 234444 444432 1111
Q ss_pred cCccceEEccCCChHhHHHHHHHHhhCCCCC---CCCcchhHHHHHHHHhcCCCchhHHHHH
Q 003773 162 MGSIDIISVKELGEEECWSLFKQVAFLGRSF---EDCEKLEPIGRKIACKCKGLPLAAKVIG 220 (796)
Q Consensus 162 ~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~---~~~~~~~~~~~~i~~~~~g~PLal~~~~ 220 (796)
......+.+.+++.++..+++.+.+...... ....-..+..+.+++.++|.+-.+.-+.
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 1224588899999999999998876431110 1111234567788888999876554433
No 171
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.36 E-value=3.7e-06 Score=85.03 Aligned_cols=181 Identities=19% Similarity=0.128 Sum_probs=98.0
Q ss_pred ccCcccccHHHHHHHhcccCC------------CCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCC
Q 003773 13 LKLQIEGLDDDNTLALASSEQ------------QKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFE 80 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~~~~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 80 (796)
...+++|.++.++.+...... ....+.+.|+|++|+|||++|+++++. .... .+.+..+.-..
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~~~~ 89 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSELVK 89 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGGGCC
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHHHHH
Confidence 456799999999855443211 134457889999999999999999876 2222 23333322110
Q ss_pred HHHHHHHHHHHhccCCCCCccHHHHHH-HHHHHhCCceEEEEEeCCCCC-----------CccChhhHhhh---cc--CC
Q 003773 81 EIRIAKAILEVLDKSASSLGEFQSLMQ-QTQESIRGKKFFLVLDDVWDG-----------DFKKWDPFFSC---LK--NG 143 (796)
Q Consensus 81 ~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~~~l~~~~~LlvlDd~~~~-----------~~~~~~~l~~~---~~--~~ 143 (796)
........... .+.......+.+|++|+++.. .......+... +. ..
T Consensus 90 ----------------~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 90 ----------------KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp ----------------CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred ----------------hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 00111111111 222222356689999999441 10111122222 21 12
Q ss_pred CCCcEEEEEecchhhhh-----ccCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCC-CchhHH
Q 003773 144 HHESKILITTRDRSVAL-----QMGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKG-LPLAAK 217 (796)
Q Consensus 144 ~~gs~iiiTsr~~~~~~-----~~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~PLal~ 217 (796)
..+..||.||...+... .......+.+...+.++..++++..+..... ..... ...+++.+.| .|-.+.
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHH
Confidence 33566777777543221 1122347899999999999999887643221 11112 4567777777 443444
Q ss_pred HH
Q 003773 218 VI 219 (796)
Q Consensus 218 ~~ 219 (796)
.+
T Consensus 229 ~l 230 (285)
T 3h4m_A 229 AI 230 (285)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 172
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.36 E-value=6e-06 Score=87.88 Aligned_cols=58 Identities=16% Similarity=0.171 Sum_probs=37.7
Q ss_pred CCCccceeeccccccccccccccccccccCCCCccceeeccCCCCCCCCCc-CCCCCCCccEEEEcCC
Q 003773 707 AFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLPD-HLLQTTTLQELSIRGC 773 (796)
Q Consensus 707 ~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~ 773 (796)
.+.+|+.+.+.+ +++.+ ....|.++++|+.+.|..+ ++.++. .+.+|++|+.+++..+
T Consensus 318 ~c~~L~~i~lp~--~v~~I-----~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 318 SCTSLVSIDLPY--LVEEI-----GKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TCTTCCEECCCT--TCCEE-----CTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCCCCCEEEeCC--cccEE-----hHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence 566777776643 23322 2445677888888888654 555543 5667888888888654
No 173
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.35 E-value=1.3e-06 Score=92.27 Aligned_cols=196 Identities=14% Similarity=0.051 Sum_probs=105.7
Q ss_pred cCcccccHHHHHH---HhcccCCCC-CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeC----CcCCHHHHH
Q 003773 14 KLQIEGLDDDNTL---ALASSEQQK-GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVS----DAFEEIRIA 85 (796)
Q Consensus 14 ~~~~vGr~~~~~~---l~~~~~~~~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~----~~~~~~~~~ 85 (796)
.++|||++..++. +........ ..+.+.|+|++|+|||++|+++++....... .+.+... .........
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTP---FTAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCC---EEEEEGGGGSCSSSCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCC---cccccchhhhhcccchhHHH
Confidence 5679999999773 333332222 2368899999999999999999987321112 2222221 122333333
Q ss_pred HHHHHHhcc-C--------------------C-------CC-----CccHHHHHHHHHHHh--CCc----eEEEEEeCCC
Q 003773 86 KAILEVLDK-S--------------------A-------SS-----LGEFQSLMQQTQESI--RGK----KFFLVLDDVW 126 (796)
Q Consensus 86 ~~i~~~l~~-~--------------------~-------~~-----~~~~~~~~~~~~~~l--~~~----~~LlvlDd~~ 126 (796)
.+..+.... . . .. ..+..+......... .++ +.+|++|+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 333332110 0 0 00 111122222221111 133 3599999997
Q ss_pred CCCccChhhHhhhccCCCCCcEEEEEecc-----------------hhhhhccCccceEEccCCChHhHHHHHHHHhhCC
Q 003773 127 DGDFKKWDPFFSCLKNGHHESKILITTRD-----------------RSVALQMGSIDIISVKELGEEECWSLFKQVAFLG 189 (796)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~gs~iiiTsr~-----------------~~~~~~~~~~~~~~l~~l~~~e~~~lf~~~~~~~ 189 (796)
....+....+...+...... .++++|.. +.+. .....+.+.+++.++..+++...+...
T Consensus 200 ~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~---sR~~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLL---DRLLIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHH---TTEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred ccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHH---hhccEEEecCCCHHHHHHHHHHHHHHc
Confidence 65545555555555443333 34444431 1121 123458999999999999998876432
Q ss_pred CCCCCCcchhHHHHHHHHhcC-CCchhHHHHH
Q 003773 190 RSFEDCEKLEPIGRKIACKCK-GLPLAAKVIG 220 (796)
Q Consensus 190 ~~~~~~~~~~~~~~~i~~~~~-g~PLal~~~~ 220 (796)
... -..+....+++.+. |.|-.+..+.
T Consensus 276 ~~~----~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 276 DVE----MSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp TCC----BCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCC----CCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 221 22455777888887 7776554433
No 174
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.33 E-value=7e-06 Score=86.98 Aligned_cols=53 Identities=19% Similarity=0.282 Sum_probs=24.0
Q ss_pred ccceEecCCCCccccch-hhhccCCccEeeccccccccccchhhccccCCCeeecC
Q 003773 458 HLKYLNLSELCIERLPE-TLCELYNLQKLAVRWCTNLRELPAGIGKLMNMRSLMNG 512 (796)
Q Consensus 458 ~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~ 512 (796)
+|+.+.+.. .++.++. .+.+|.+|+.+++..|. +..+|.......+|+.+.+.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeC
Confidence 455555543 3444332 34455555555555432 44444332223455555554
No 175
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.30 E-value=8.6e-07 Score=92.74 Aligned_cols=91 Identities=14% Similarity=0.192 Sum_probs=71.0
Q ss_pred hhhHHHhhhcCcccceeeecccccCCCccccccccc-ccccCccccceEecCCCCccccch-hhhccCCccEeecccccc
Q 003773 415 GSILVELFSKVACLRALVIRQWFVPLDDQNFIREIP-ENIGKLIHLKYLNLSELCIERLPE-TLCELYNLQKLAVRWCTN 492 (796)
Q Consensus 415 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~ 492 (796)
..+|. +..+.+|+.|+|++ +|.+..+| ..|+.|++|++|+|++|.++.+|. .|.+|++|++|+|++|.
T Consensus 22 ~~ip~--l~~~~~L~~L~l~~-------~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~- 91 (347)
T 2ifg_A 22 DSLHH--LPGAENLTELYIEN-------QQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA- 91 (347)
T ss_dssp TTTTT--SCSCSCCSEEECCS-------CSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-
T ss_pred CccCC--CCCCCCeeEEEccC-------CCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-
Confidence 34444 77788899999982 27777775 578899999999999999987765 67899999999999876
Q ss_pred ccccchhhccccCCCeeecCCcc
Q 003773 493 LRELPAGIGKLMNMRSLMNGQTE 515 (796)
Q Consensus 493 ~~~lp~~~~~l~~L~~L~l~~~~ 515 (796)
+..+|..+....+|+.|++.+|.
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSC
T ss_pred cceeCHHHcccCCceEEEeeCCC
Confidence 66777654444449999998883
No 176
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.26 E-value=9.8e-06 Score=83.68 Aligned_cols=170 Identities=12% Similarity=0.064 Sum_probs=101.6
Q ss_pred HHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc--------------------cCCeEEEEEeCCcCC
Q 003773 21 DDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKR--------------------KFDIVIWVCVSDAFE 80 (796)
Q Consensus 21 ~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--------------------~f~~~~wv~~~~~~~ 80 (796)
++..+.+......+.-...+.++|+.|+|||++|+.+++...... +++ +.++....
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~--- 83 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEK--- 83 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCT---
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccc---
Confidence 334444444443334456799999999999999999887522111 122 22222210
Q ss_pred HHHHHHHHHHHhccCCCCCccHHHHHHHHHHHh-----CCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecc
Q 003773 81 EIRIAKAILEVLDKSASSLGEFQSLMQQTQESI-----RGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRD 155 (796)
Q Consensus 81 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l-----~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~ 155 (796)
.......++.. .+.+.+ .+++-++|+|+++.........+...+......+.+|++|..
T Consensus 84 ---------------~~~~~~i~~ir-~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~ 147 (334)
T 1a5t_A 84 ---------------GKNTLGVDAVR-EVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATRE 147 (334)
T ss_dssp ---------------TCSSBCHHHHH-HHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESC
T ss_pred ---------------cCCCCCHHHHH-HHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 00111122221 122222 356789999999776555566677777665566777777776
Q ss_pred hh-hhhcc-CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHH
Q 003773 156 RS-VALQM-GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVI 219 (796)
Q Consensus 156 ~~-~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 219 (796)
.+ +...+ .....+++.+++.++..+.+.+.. . . ..+.+..+++.++|.|..+..+
T Consensus 148 ~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~-~----~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 148 PERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----T-M----SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----C-C----CHHHHHHHHHHTTTCHHHHHHT
T ss_pred hHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----C-C----CHHHHHHHHHHcCCCHHHHHHH
Confidence 43 22111 224589999999999999988765 1 1 1345677999999999765443
No 177
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.25 E-value=2.2e-05 Score=78.15 Aligned_cols=184 Identities=11% Similarity=0.031 Sum_probs=96.0
Q ss_pred ccCcccccHHHHHHHhcc---cCC--------CCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCH
Q 003773 13 LKLQIEGLDDDNTLALAS---SEQ--------QKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEE 81 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~---~~~--------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 81 (796)
.-.+++|.+..++.+.+. ... ....+.|.|+|++|+|||++|+++++. .... .+.+.++.-.+.
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~~ 78 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVEV 78 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHhh
Confidence 345789999888744221 110 123456889999999999999999876 2222 344444432110
Q ss_pred HHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCC------------CccCh---hhHhhhccC--CC
Q 003773 82 IRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDG------------DFKKW---DPFFSCLKN--GH 144 (796)
Q Consensus 82 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~------------~~~~~---~~l~~~~~~--~~ 144 (796)
............+.......+.+|++|+++.. ..... ..+...+.. ..
T Consensus 79 ---------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 143 (262)
T 2qz4_A 79 ---------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT 143 (262)
T ss_dssp ---------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT
T ss_pred ---------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC
Confidence 00000111111222222345789999999653 11111 122222222 12
Q ss_pred CCcEEEEEecchhhhh-cc----CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCch-hHHH
Q 003773 145 HESKILITTRDRSVAL-QM----GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPL-AAKV 218 (796)
Q Consensus 145 ~gs~iiiTsr~~~~~~-~~----~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~ 218 (796)
.+..||.||....... .. .....+.+...+.++..++++..+..... ..........+++.+.|.+- .|..
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL---TQSSTFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC---CBTHHHHHHHHHHTCTTCCHHHHHH
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC---CcchhhHHHHHHHHCCCCCHHHHHH
Confidence 3455666665543211 11 12357889999999999999887643221 11112234678888888754 4443
Q ss_pred H
Q 003773 219 I 219 (796)
Q Consensus 219 ~ 219 (796)
+
T Consensus 221 l 221 (262)
T 2qz4_A 221 I 221 (262)
T ss_dssp H
T ss_pred H
Confidence 3
No 178
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.23 E-value=8e-06 Score=84.83 Aligned_cols=185 Identities=9% Similarity=0.029 Sum_probs=104.0
Q ss_pred cccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCC-eEEEEEeCCcCCHHHHHHHH
Q 003773 10 TARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFD-IVIWVCVSDAFEEIRIAKAI 88 (796)
Q Consensus 10 ~~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 88 (796)
.|..-.+++|.+..++.+......+ ..+-+.++|++|+||||+|+.++..... ..+. .+..++.+.......+.. +
T Consensus 20 rp~~~~~~~g~~~~~~~L~~~i~~g-~~~~~ll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~~~~~~~~~~~~~ir~-~ 96 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRKFVDEG-KLPHLLFYGPPGTGKTSTIVALAREIYG-KNYSNMVLELNASDDRGIDVVRN-Q 96 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTT-CCCCEEEECSSSSSHHHHHHHHHHHHHT-TSHHHHEEEECTTSCCSHHHHHT-H
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHHHHHHcC-CCccceEEEEcCcccccHHHHHH-H
Confidence 3445567899998888665554322 3223889999999999999999876211 1111 122222222222222111 1
Q ss_pred HHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecchh-hhhc-cCccc
Q 003773 89 LEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDRS-VALQ-MGSID 166 (796)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~-~~~~-~~~~~ 166 (796)
...+.... ..+.+.+-++|+|+++.........+...+......+++|++|.... +... .....
T Consensus 97 i~~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~ 162 (340)
T 1sxj_C 97 IKDFASTR--------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT 162 (340)
T ss_dssp HHHHHHBC--------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHHhhc--------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhce
Confidence 11111000 00123477899999966544445556555554445567777776432 1111 11234
Q ss_pred eEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchh
Q 003773 167 IISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLA 215 (796)
Q Consensus 167 ~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 215 (796)
.+.+.+++.++..+.+.+.+...... -..+..+.+++.++|.+--
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~~----i~~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 163 RFRFQPLPQEAIERRIANVLVHEKLK----LSPNAEKALIELSNGDMRR 207 (340)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCC----BCHHHHHHHHHHHTTCHHH
T ss_pred eEeccCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHH
Confidence 78899999999888887766322211 1134567788888887753
No 179
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.18 E-value=2.1e-06 Score=80.61 Aligned_cols=49 Identities=20% Similarity=0.136 Sum_probs=39.3
Q ss_pred ccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 11 ARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 11 ~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
+....+++||+++++.+.+.+.. ...+.+.|+|++|+|||++|+.+++.
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR-RTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred ccccchhhcchHHHHHHHHHHhC-CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 44566799999999987766543 33456789999999999999999876
No 180
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.14 E-value=1.6e-05 Score=81.37 Aligned_cols=154 Identities=12% Similarity=0.064 Sum_probs=86.6
Q ss_pred cccccHHHHHHHhccc--------------CCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCC--eEEEEEeCCcC
Q 003773 16 QIEGLDDDNTLALASS--------------EQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFD--IVIWVCVSDAF 79 (796)
Q Consensus 16 ~~vGr~~~~~~l~~~~--------------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~ 79 (796)
+++|.+..++.+.+.. ........+.|+|++|+|||++|+.+++......... .++.++.+.-
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l- 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL- 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT-
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh-
Confidence 6999999998544221 1123445788999999999999998887632222211 2333332111
Q ss_pred CHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCC---------CccChhhHhhhccCCCCCcEEE
Q 003773 80 EEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDG---------DFKKWDPFFSCLKNGHHESKIL 150 (796)
Q Consensus 80 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~---------~~~~~~~l~~~~~~~~~gs~ii 150 (796)
..... ..........+... +..+|++|+++.. .......+...+.....+..||
T Consensus 111 -------------~~~~~-g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i 173 (309)
T 3syl_A 111 -------------VGQYI-GHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVI 173 (309)
T ss_dssp -------------CCSST-TCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEE
T ss_pred -------------hhhcc-cccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEE
Confidence 00000 00111111222222 2359999999632 2233345555555555566788
Q ss_pred EEecchhhhh------cc--CccceEEccCCChHhHHHHHHHHhh
Q 003773 151 ITTRDRSVAL------QM--GSIDIISVKELGEEECWSLFKQVAF 187 (796)
Q Consensus 151 iTsr~~~~~~------~~--~~~~~~~l~~l~~~e~~~lf~~~~~ 187 (796)
.||....... .+ .....+.+.+++.++..+++...+.
T Consensus 174 ~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 174 LAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred EeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 8886432110 00 1126899999999999999988764
No 181
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.11 E-value=1.9e-05 Score=81.32 Aligned_cols=156 Identities=17% Similarity=0.133 Sum_probs=87.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRG 115 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 115 (796)
....+.|+|++|+||||+|+.+++..... .+ .++++++. .+...+...+... .... +.+.. .
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i~~~------~~~~~~~~~~~~~-----~~~~----~~~~~-~ 97 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYSSAD------DFAQAMVEHLKKG-----TINE----FRNMY-K 97 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEEEHH------HHHHHHHHHHHHT-----CHHH----HHHHH-H
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEHH------HHHHHHHHHHHcC-----cHHH----HHHHh-c
Confidence 34678899999999999999999863211 22 24555432 3333333333211 1111 11222 2
Q ss_pred ceEEEEEeCCCCCCc--cChhhHhhhccC-CCCCcEEEEEecchh---------hhhccCccceEEccCCChHhHHHHHH
Q 003773 116 KKFFLVLDDVWDGDF--KKWDPFFSCLKN-GHHESKILITTRDRS---------VALQMGSIDIISVKELGEEECWSLFK 183 (796)
Q Consensus 116 ~~~LlvlDd~~~~~~--~~~~~l~~~~~~-~~~gs~iiiTsr~~~---------~~~~~~~~~~~~l~~l~~~e~~~lf~ 183 (796)
+.-+|++||++.... ...+.+...+.. ...+..||+|+.... +...+.....+++.+ +.++..+++.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~ 176 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIK 176 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHH
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHH
Confidence 366999999965322 112233333321 123557888886421 111122225789999 9999999998
Q ss_pred HHhhCCCCCCCCcchhHHHHHHHHhcCCCchh
Q 003773 184 QVAFLGRSFEDCEKLEPIGRKIACKCKGLPLA 215 (796)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 215 (796)
..+...... -..+....+++.+ |..-.
T Consensus 177 ~~~~~~~~~----l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 177 EKLKEFNLE----LRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHTTCC----CCHHHHHHHHHHC-SSHHH
T ss_pred HHHHhcCCC----CCHHHHHHHHHhC-CCHHH
Confidence 887432221 1145567788888 76643
No 182
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.08 E-value=4.3e-05 Score=78.49 Aligned_cols=183 Identities=16% Similarity=0.069 Sum_probs=100.0
Q ss_pred ccCcccccHHHHHHHhccc-----------CCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCH
Q 003773 13 LKLQIEGLDDDNTLALASS-----------EQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEE 81 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~~-----------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 81 (796)
.-.+++|.+..++.+.+.. ......+-|.++|++|+|||++|+++++. .... ++.+.++.
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~v~~~~---- 86 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSSD---- 86 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCE---EEEEEHHH----
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCC---EEEEchHH----
Confidence 3456999999988554332 11223457899999999999999999886 2222 23333221
Q ss_pred HHHHHHHHHHhccCCCCCccHHHHHHHHHH-HhCCceEEEEEeCCCCCCcc-------C----hhhHhhhcc---CCCCC
Q 003773 82 IRIAKAILEVLDKSASSLGEFQSLMQQTQE-SIRGKKFFLVLDDVWDGDFK-------K----WDPFFSCLK---NGHHE 146 (796)
Q Consensus 82 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~LlvlDd~~~~~~~-------~----~~~l~~~~~---~~~~g 146 (796)
+. .. ...........+.+ .-..++.+|++|+++..... . ...+...+. ....+
T Consensus 87 --l~----~~------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 87 --LV----SK------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp --HH----TT------TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred --Hh----hc------ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence 11 00 01111222222222 22346789999999642110 0 122322222 23345
Q ss_pred cEEEEEecchhhhhc-c--CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCC-chhHHHHH
Q 003773 147 SKILITTRDRSVALQ-M--GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGL-PLAAKVIG 220 (796)
Q Consensus 147 s~iiiTsr~~~~~~~-~--~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~~ 220 (796)
..||.||........ + .....+.+...+.++..++++..+....... .......+++.+.|. +-.|..+.
T Consensus 155 v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~----~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL----TKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC----CHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred eEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCC----CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 556667765322111 0 1235778888999999999988774322111 133467788888884 44444443
No 183
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.07 E-value=4.2e-05 Score=76.57 Aligned_cols=171 Identities=20% Similarity=0.165 Sum_probs=89.8
Q ss_pred cCcccccHHHHHHHhc-------ccC--CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHH
Q 003773 14 KLQIEGLDDDNTLALA-------SSE--QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRI 84 (796)
Q Consensus 14 ~~~~vGr~~~~~~l~~-------~~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 84 (796)
...++|++..++.++. ... .....+.+.|+|++|+|||++|+++++. .... .+.+.....
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~---~~~i~~~~~------ 100 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE--SNFP---FIKICSPDK------ 100 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH--HTCS---EEEEECGGG------
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEeCHHH------
Confidence 3468888887764433 111 1345678999999999999999999886 2222 222332211
Q ss_pred HHHHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCC------Cc---cC-hhhHhhhccC---CCCCcEEEE
Q 003773 85 AKAILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDG------DF---KK-WDPFFSCLKN---GHHESKILI 151 (796)
Q Consensus 85 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~------~~---~~-~~~l~~~~~~---~~~gs~iii 151 (796)
+.+. ............+......+..+|++|+++.. .. .. ...+...+.. ......||.
T Consensus 101 -------~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ 172 (272)
T 1d2n_A 101 -------MIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIG 172 (272)
T ss_dssp -------CTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEE
T ss_pred -------hcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEE
Confidence 0000 00000111122223333467899999998431 11 11 1222232222 222344666
Q ss_pred Eecchhhhhc--c--CccceEEccCCCh-HhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCC
Q 003773 152 TTRDRSVALQ--M--GSIDIISVKELGE-EECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGL 212 (796)
Q Consensus 152 Tsr~~~~~~~--~--~~~~~~~l~~l~~-~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 212 (796)
||...+.... . .....+.+++++. ++..+++.+.. . . ..+....+++.+.|.
T Consensus 173 ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~-~----~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 173 TTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N-F----KDKERTTIAQQVKGK 229 (272)
T ss_dssp EESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C-S----CHHHHHHHHHHHTTS
T ss_pred ecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C-C----CHHHHHHHHHHhcCC
Confidence 7776543322 1 1145788888987 55555555431 1 1 134467788888884
No 184
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.05 E-value=4.9e-06 Score=74.24 Aligned_cols=112 Identities=12% Similarity=0.028 Sum_probs=65.4
Q ss_pred cccccHHHHHHHhcccCC-CCCcEEEEEEcCCCCcHHHHHHHHHcCccc-cccCCeEEEEEeCCcCCHHHHHHHHHHHhc
Q 003773 16 QIEGLDDDNTLALASSEQ-QKGLRIISLFGLGGIGKTTLAQLAFNNEGV-KRKFDIVIWVCVSDAFEEIRIAKAILEVLD 93 (796)
Q Consensus 16 ~~vGr~~~~~~l~~~~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 93 (796)
+++|+...++.+.+.... .....-|.|+|++|+|||++|+.+++.... ...| + +++....+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~---v-~~~~~~~~~------------ 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEF---V-YRELTPDNA------------ 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCC---E-EEECCTTTS------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCE---E-EECCCCCcc------------
Confidence 589999999965544210 112235779999999999999999886321 2222 3 555543221
Q ss_pred cCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecc
Q 003773 94 KSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRD 155 (796)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~ 155 (796)
...... +... +.-.+++|+++....+....+...+.......++|.||..
T Consensus 66 ------~~~~~~---~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ------PQLNDF---IALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ------SCHHHH---HHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ------hhhhcH---HHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 111111 1111 2246899999776555555666666444445678887764
No 185
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.04 E-value=0.00017 Score=73.78 Aligned_cols=185 Identities=17% Similarity=0.119 Sum_probs=99.1
Q ss_pred ccCcccccHHHHHHHhccc----------CC-CCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCH
Q 003773 13 LKLQIEGLDDDNTLALASS----------EQ-QKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEE 81 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~~----------~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 81 (796)
.-.+++|.++.++.+.+.. .. ....+.|.++|++|+|||++|+++++... .. ..+.+..+.-.+
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~---~~~~i~~~~l~~- 84 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDLVS- 84 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SC---EEEEEECCSSCC-
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CC---cEEEEEhHHHHh-
Confidence 4457999998888444321 11 12346789999999999999999997620 11 233344432111
Q ss_pred HHHHHHHHHHhccCCCCCccHHHHHHHHHH-HhCCceEEEEEeCCCCCCc------cC-----hhhHhhhccC---CCCC
Q 003773 82 IRIAKAILEVLDKSASSLGEFQSLMQQTQE-SIRGKKFFLVLDDVWDGDF------KK-----WDPFFSCLKN---GHHE 146 (796)
Q Consensus 82 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~LlvlDd~~~~~~------~~-----~~~l~~~~~~---~~~g 146 (796)
. ...........+.+ .-..++.+|++|+++.... .. ...+...+.. ...+
T Consensus 85 -------------~--~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 85 -------------K--WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp -------------S--SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred -------------h--hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 0 00111122222222 2235678999999964210 00 1112222222 2234
Q ss_pred cEEEEEecchhhhhc-c--CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCc-hhHHHHHH
Q 003773 147 SKILITTRDRSVALQ-M--GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLP-LAAKVIGN 221 (796)
Q Consensus 147 s~iiiTsr~~~~~~~-~--~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~~~ 221 (796)
..||.||........ + .....+.+...+.++..++++........ .........|++.+.|.. -.|..+..
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~----~l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN----SLTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB----CCCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 455556654321111 0 22357888888999999999887632211 111345678999998874 44555443
No 186
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.04 E-value=2e-06 Score=89.37 Aligned_cols=64 Identities=9% Similarity=-0.099 Sum_probs=37.5
Q ss_pred ccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCC-----CCchhhhccCCcEEEEcCCC
Q 003773 583 NKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNI-----FPKWLTLLTNLRELKLFSCV 657 (796)
Q Consensus 583 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~l~~L~~L~L~~~~ 657 (796)
.+++|+.|.+..|.+.+ . ....+.....+++|++|+++.|.+.. ++..+..+++|+.|+|++|.
T Consensus 250 ~~p~Lr~L~L~~~~i~~----------~-~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQN----------V-VVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TCTTCCEEEEESCTTHH----------H-HHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCcCEEeCCCCCCch----------H-HHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 35667777776655321 0 01112222345677777777766543 34455678899999998884
No 187
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.04 E-value=4.4e-05 Score=79.55 Aligned_cols=185 Identities=10% Similarity=0.006 Sum_probs=100.3
Q ss_pred cccCcccccHHHHHHHhcccC-----------CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCC
Q 003773 12 RLKLQIEGLDDDNTLALASSE-----------QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFE 80 (796)
Q Consensus 12 ~~~~~~vGr~~~~~~l~~~~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 80 (796)
..-.+++|++..++.+.+... .....+.|.|+|++|+|||++|+++++.. .. ..+.+.++.-..
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~--~~---~~~~i~~~~l~~ 155 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS--GA---TFFSISASSLTS 155 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT--TC---EEEEEEGGGGCC
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc--CC---eEEEEehHHhhc
Confidence 344579999999985544321 12345678999999999999999998762 21 234455432211
Q ss_pred HHHHHHHHHHHhccCCCCCccHHHHHHHHHH-HhCCceEEEEEeCCCCCCc-----------cChhhHhhhccC----CC
Q 003773 81 EIRIAKAILEVLDKSASSLGEFQSLMQQTQE-SIRGKKFFLVLDDVWDGDF-----------KKWDPFFSCLKN----GH 144 (796)
Q Consensus 81 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~LlvlDd~~~~~~-----------~~~~~l~~~~~~----~~ 144 (796)
. ...........+.. .-..++.+|+||+++.... .....+...+.. ..
T Consensus 156 ~----------------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 156 K----------------WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp S----------------STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred c----------------ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 00111111122221 2235678999999843110 011223333322 12
Q ss_pred CCcEEEEEecchhhh-hcc--CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCC-CchhHHHHH
Q 003773 145 HESKILITTRDRSVA-LQM--GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKG-LPLAAKVIG 220 (796)
Q Consensus 145 ~gs~iiiTsr~~~~~-~~~--~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~PLal~~~~ 220 (796)
.+..||.||...... ... .....+.+...+.++..+++...+...... -..+....+++.+.| .+-.|..+.
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~----l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC----LSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC----CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC----ccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 334555566543211 111 223477888889999999888776322111 113456778888988 445555554
Q ss_pred H
Q 003773 221 N 221 (796)
Q Consensus 221 ~ 221 (796)
.
T Consensus 296 ~ 296 (357)
T 3d8b_A 296 R 296 (357)
T ss_dssp H
T ss_pred H
Confidence 3
No 188
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.03 E-value=7.4e-05 Score=77.66 Aligned_cols=181 Identities=16% Similarity=0.075 Sum_probs=97.4
Q ss_pred ccCcccccHHHHHHHhccc-----------CCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCH
Q 003773 13 LKLQIEGLDDDNTLALASS-----------EQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEE 81 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~~-----------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 81 (796)
.-.+++|.+..++.+.+.. ......+-|.|+|++|+|||++|+++++.. ... .+.+.++
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~--~~~---~~~v~~~----- 118 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA--NST---FFSVSSS----- 118 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH--TCE---EEEEEHH-----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCC---EEEeeHH-----
Confidence 3456999999888554332 111223568899999999999999999862 222 2333322
Q ss_pred HHHHHHHHHHhccCCCCCccHHHHHHHHHH-HhCCceEEEEEeCCCCCCcc-----------ChhhHhhhcc---CCCCC
Q 003773 82 IRIAKAILEVLDKSASSLGEFQSLMQQTQE-SIRGKKFFLVLDDVWDGDFK-----------KWDPFFSCLK---NGHHE 146 (796)
Q Consensus 82 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~LlvlDd~~~~~~~-----------~~~~l~~~~~---~~~~g 146 (796)
.+. ... ..........+.. .-..++.+|++|+++..... ....+...+. ....+
T Consensus 119 -~l~----~~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 119 -DLV----SKW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp -HHH----SCC---------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred -HHh----hhh------cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 111 100 0011112222222 22357889999999642211 0122222222 12234
Q ss_pred cEEEEEecchh-----hhhccCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCC-chhHHHHH
Q 003773 147 SKILITTRDRS-----VALQMGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGL-PLAAKVIG 220 (796)
Q Consensus 147 s~iiiTsr~~~-----~~~~~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~~ 220 (796)
..||.||.... +.+ .....+.+...+.++..+++...+...... ........|++.+.|. +-.|..+.
T Consensus 188 v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~----~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSV----LTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBC----CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCC----CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 55665665432 222 223577888889999999998876322111 1133467788899884 44454444
No 189
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.03 E-value=5.2e-07 Score=94.70 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=25.2
Q ss_pred HHHhhCCCCCCCcEEEEeecCCCC-----CCchhhhccCCcEEEEcCCC
Q 003773 614 QLLEALQPPLNVEELWILFYGGNI-----FPKWLTLLTNLRELKLFSCV 657 (796)
Q Consensus 614 ~~~~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~l~~L~~L~L~~~~ 657 (796)
.+...+..+++|+.|++++|.+.. ++..+...++|++|+|++|.
T Consensus 202 ~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 202 LLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 334445555566666666665432 22233355777888887774
No 190
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.96 E-value=1.4e-06 Score=79.06 Aligned_cols=68 Identities=15% Similarity=0.227 Sum_probs=50.8
Q ss_pred cCCCccceeeccccccccccccccccccccCC----CCccceeeccCCCCCCC--CCcCCCCCCCccEEEEcCCCchhhc
Q 003773 706 IAFPKLKSLKIEDLDELEEWNYRVTRKENISI----MPRLSSLEIDCCSKLNV--LPDHLLQTTTLQELSIRGCPILEER 779 (796)
Q Consensus 706 ~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~----l~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~~ 779 (796)
..+++|++|++++|..+++..+. .+.. .++|++|+|++|+.++. +. .+.++++|+.|+|++|+.+++.
T Consensus 82 ~~~~~L~~L~L~~C~~ItD~gL~-----~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIEDGCLE-----RLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp TTCSCCCEEEEESCTTCCHHHHH-----HHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCTTCCEEEEESCTTCCCH
T ss_pred cCCCCCCEEEeCCCCccCHHHHH-----HHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCCCCCEEECCCCCCCCch
Confidence 47889999999999888776542 2223 35799999999987754 21 2456899999999999988863
No 191
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.96 E-value=0.00013 Score=77.02 Aligned_cols=184 Identities=16% Similarity=0.064 Sum_probs=96.3
Q ss_pred cccCcccccHHHHHHHhcccC-----------CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCC
Q 003773 12 RLKLQIEGLDDDNTLALASSE-----------QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFE 80 (796)
Q Consensus 12 ~~~~~~vGr~~~~~~l~~~~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 80 (796)
..-.+++|++..++.+..... .....+.|.|+|++|+|||++|+++++. ... .++.+.++.-..
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~---~~~~v~~~~l~~ 186 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNA---TFFNISAASLTS 186 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTC---EEEEECSCCC--
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcC---cEEEeeHHHhhc
Confidence 345679999999985554320 0122467899999999999999999875 221 234444433211
Q ss_pred HHHHHHHHHHHhccCCCCCccHHHHHHHHH-HHhCCceEEEEEeCCCCCC-------ccCh----hhHhhhcc---C-CC
Q 003773 81 EIRIAKAILEVLDKSASSLGEFQSLMQQTQ-ESIRGKKFFLVLDDVWDGD-------FKKW----DPFFSCLK---N-GH 144 (796)
Q Consensus 81 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~LlvlDd~~~~~-------~~~~----~~l~~~~~---~-~~ 144 (796)
. . . .........+. ..-...+.+|+||+++... .... ..+...+. . ..
T Consensus 187 ~--~-------~-------g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 187 K--Y-------V-------GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp ---------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred c--c-------c-------chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 0 0 0 00011111111 1123456799999995420 0001 11222211 1 12
Q ss_pred CCcEEEEEecchhhhh-cc--CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCch-hHHHHH
Q 003773 145 HESKILITTRDRSVAL-QM--GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPL-AAKVIG 220 (796)
Q Consensus 145 ~gs~iiiTsr~~~~~~-~~--~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~~ 220 (796)
....||.||....... .+ .....+.+...+.++..+++...+...... -..+....+++.+.|..- +|..+.
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~----l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP----LTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC----SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 2344555665432111 11 122468888899999999998876332211 123456788888888654 554443
No 192
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.93 E-value=0.00018 Score=73.02 Aligned_cols=183 Identities=15% Similarity=0.037 Sum_probs=97.2
Q ss_pred ccCcccccHHHHHHHhcccC-----------CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCH
Q 003773 13 LKLQIEGLDDDNTLALASSE-----------QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEE 81 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 81 (796)
.-.+++|.+..++.+.+... .....+.+.|+|++|+|||++|+++++.. .. ..+.+.++....
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~--~~---~~~~i~~~~l~~- 92 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC--SA---TFLNISAASLTS- 92 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT--TC---EEEEEESTTTSS-
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh--CC---CeEEeeHHHHhh-
Confidence 44679999999885544321 01234678999999999999999998762 21 233444433211
Q ss_pred HHHHHHHHHHhccCCCCCccHHHHHHHH-HHHhCCceEEEEEeCCCCCCcc-----------ChhhHhhh---ccCC--C
Q 003773 82 IRIAKAILEVLDKSASSLGEFQSLMQQT-QESIRGKKFFLVLDDVWDGDFK-----------KWDPFFSC---LKNG--H 144 (796)
Q Consensus 82 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~-~~~l~~~~~LlvlDd~~~~~~~-----------~~~~l~~~---~~~~--~ 144 (796)
. ...+.......+ ......++.+|++|+++..... ....+... ++.. +
T Consensus 93 -------------~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 93 -------------K--YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp -------------S--SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred -------------c--ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 0 001111222222 2222356789999999542110 00112221 1211 1
Q ss_pred CCcEEEEEecchhhhh-cc--CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCch-hHHHHH
Q 003773 145 HESKILITTRDRSVAL-QM--GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPL-AAKVIG 220 (796)
Q Consensus 145 ~gs~iiiTsr~~~~~~-~~--~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~~ 220 (796)
.+..||.||...+... .. .....+.+...+.++..+++...+...... -..+....+++.+.|.+- ++..+.
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~----~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSP----LDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCC----SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 2345666666532111 00 122467777778888888887766322111 113456778889999875 554443
No 193
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.93 E-value=8.7e-05 Score=75.28 Aligned_cols=177 Identities=14% Similarity=0.059 Sum_probs=95.7
Q ss_pred cCcccccHHHHHHHhcccC------------CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCH
Q 003773 14 KLQIEGLDDDNTLALASSE------------QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEE 81 (796)
Q Consensus 14 ~~~~vGr~~~~~~l~~~~~------------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 81 (796)
-.+++|.+..++.+.+... +-...+.|.|+|++|+|||++|+++++.. .. ..+.+.+
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~--~~---~~i~v~~------ 82 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QA---NFISIKG------ 82 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT--TC---EEEEECH------
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh--CC---CEEEEEh------
Confidence 4569999998884443321 11344678999999999999999999862 22 2233321
Q ss_pred HHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCC--------------ccChhhHhhhccC--CCC
Q 003773 82 IRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGD--------------FKKWDPFFSCLKN--GHH 145 (796)
Q Consensus 82 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~--------------~~~~~~l~~~~~~--~~~ 145 (796)
..+... ..+.. ...... .+.......+.++++|+++... ......+...+.. ...
T Consensus 83 ~~l~~~---~~g~~---~~~~~~---~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 83 PELLTM---WFGES---EANVRE---IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp HHHHHH---HHTTC---TTHHHH---HHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred HHHHhh---hcCch---HHHHHH---HHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 222221 11111 111222 2222233567999999995310 0011233333322 223
Q ss_pred CcEEEEEecchhhhhc--c---CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchh
Q 003773 146 ESKILITTRDRSVALQ--M---GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLA 215 (796)
Q Consensus 146 gs~iiiTsr~~~~~~~--~---~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 215 (796)
+..||.||...+.... . .....+.+...+.++-.++++....... ...... ...+++.+.|.|=+
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~-~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP-VAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCSSCC----HHHHHHTCSSCCHH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCC-CCccch----HHHHHHHcCCCCHH
Confidence 4567777765432211 1 2235788999999998898877763221 111122 34566677777644
No 194
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.93 E-value=0.00011 Score=77.94 Aligned_cols=59 Identities=14% Similarity=0.183 Sum_probs=41.0
Q ss_pred cCCCccceeeccccccccccccccccccccCCCCccceeeccCCCCCCCCC-cCCCCCCCccEEEEcCC
Q 003773 706 IAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLP-DHLLQTTTLQELSIRGC 773 (796)
Q Consensus 706 ~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~ 773 (796)
..+.+|+.+.+.+ +++.+ ....|..+++|+.+.|.++ ++.++ ..+.++++|+.+++..+
T Consensus 294 ~~~~~L~~i~l~~--~i~~I-----~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 294 YGCSSLTEVKLLD--SVKFI-----GEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TTCTTCCEEEECT--TCCEE-----CTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT
T ss_pred ccccccccccccc--cccee-----chhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc
Confidence 3667788887654 33333 2456778899999999754 66664 45678899999988654
No 195
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.89 E-value=1.6e-05 Score=93.05 Aligned_cols=157 Identities=15% Similarity=0.130 Sum_probs=81.4
Q ss_pred cccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc-----cCCeEEEEEeCCcCCHHHHHH
Q 003773 12 RLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKR-----KFDIVIWVCVSDAFEEIRIAK 86 (796)
Q Consensus 12 ~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-----~f~~~~wv~~~~~~~~~~~~~ 86 (796)
..-+.+|||+++++.+++.+... ..+-+.++|++|+|||++|+.+++...... .-..+++++++.-..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~-~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------ 239 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRR-TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------ 239 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCS-SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------
T ss_pred CCCcccCCcHHHHHHHHHHHhcC-CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc------
Confidence 34567999999999777655322 234568999999999999999988631110 011244444322110
Q ss_pred HHHHHhccCCCCCccHHHHHHHHHHHh-C-CceEEEEEeCCCCCC--------ccChhhHhhhccCCCCCcEEEEEecch
Q 003773 87 AILEVLDKSASSLGEFQSLMQQTQESI-R-GKKFFLVLDDVWDGD--------FKKWDPFFSCLKNGHHESKILITTRDR 156 (796)
Q Consensus 87 ~i~~~l~~~~~~~~~~~~~~~~~~~~l-~-~~~~LlvlDd~~~~~--------~~~~~~l~~~~~~~~~gs~iiiTsr~~ 156 (796)
+ .....+.......+.+.+ . +++.+|++|+++... .+....+...+.. .+..+|.+|...
T Consensus 240 -------g-~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~~~ 309 (854)
T 1qvr_A 240 -------G-AKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTLD 309 (854)
T ss_dssp --------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEECHH
T ss_pred -------c-CccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecCch
Confidence 0 001112222222222222 2 468999999995421 1111223333322 234466555543
Q ss_pred hh-----hhcc-CccceEEccCCChHhHHHHHHHH
Q 003773 157 SV-----ALQM-GSIDIISVKELGEEECWSLFKQV 185 (796)
Q Consensus 157 ~~-----~~~~-~~~~~~~l~~l~~~e~~~lf~~~ 185 (796)
.. ...+ .....+.+.+++.++..++++..
T Consensus 310 ~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 310 EYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred HHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 22 1111 12346899999999999988654
No 196
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.89 E-value=0.00015 Score=77.73 Aligned_cols=185 Identities=16% Similarity=0.091 Sum_probs=97.1
Q ss_pred ccCcccccHHHHHHHhccc----------C-CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCH
Q 003773 13 LKLQIEGLDDDNTLALASS----------E-QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEE 81 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~~----------~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 81 (796)
.-.+++|.+..++.+.+.. . .....+.|.|+|++|+|||++|+++++... .. ..+.+..+.-
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-~~---~~~~v~~~~l--- 204 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDL--- 204 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC-SS---EEEEECCC-----
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC-CC---CEEEEeHHHH---
Confidence 3456999999888554332 1 112346789999999999999999998620 11 2233333211
Q ss_pred HHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCc-------cCh----hhHhhhccC---CCCCc
Q 003773 82 IRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDF-------KKW----DPFFSCLKN---GHHES 147 (796)
Q Consensus 82 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~-------~~~----~~l~~~~~~---~~~gs 147 (796)
.. ...+.. .......... .-..++.+|++|+++.... ... ..+...+.. ...+.
T Consensus 205 ---~~---~~~g~~---~~~~~~~f~~---a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v 272 (444)
T 2zan_A 205 ---VS---KWLGES---EKLVKNLFQL---ARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 272 (444)
T ss_dssp -------------C---CCTHHHHHHH---HHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSC
T ss_pred ---Hh---hhcchH---HHHHHHHHHH---HHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCE
Confidence 10 011111 1112222222 1235678999999965311 011 122222222 13445
Q ss_pred EEEEEecchhhhhc--c-CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCC-chhHHHHH
Q 003773 148 KILITTRDRSVALQ--M-GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGL-PLAAKVIG 220 (796)
Q Consensus 148 ~iiiTsr~~~~~~~--~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~~ 220 (796)
.||.||........ . .....+.+...+.++..++|+..+..... .........|++.+.|. +-.|..+.
T Consensus 273 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~----~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 273 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN----SLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE----ECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 56667765322111 0 22347778888888888899887632211 11134467788889885 43444443
No 197
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.88 E-value=4e-05 Score=77.35 Aligned_cols=147 Identities=14% Similarity=0.040 Sum_probs=90.4
Q ss_pred cHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCcc-cc-ccCCeEEEEEeCC-cCCHHHHHHHHHHHhccCC
Q 003773 20 LDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEG-VK-RKFDIVIWVCVSD-AFEEIRIAKAILEVLDKSA 96 (796)
Q Consensus 20 r~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~-~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~ 96 (796)
.++.++.+......+. .+...++|+.|+||||+|+.+++... .. .+.+ +.++..+. ......+ +++.+.+....
T Consensus 2 ~~~~~~~L~~~i~~~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p 78 (305)
T 2gno_A 2 AKDQLETLKRIIEKSE-GISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSP 78 (305)
T ss_dssp --CHHHHHHHHHHTCS-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCC
T ss_pred hHHHHHHHHHHHHCCC-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhcc
Confidence 3444454444443333 67899999999999999999876310 11 2333 34444332 2222222 22333332111
Q ss_pred CCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecch-hhhhccCccceEEccCCCh
Q 003773 97 SSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDR-SVALQMGSIDIISVKELGE 175 (796)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~-~~~~~~~~~~~~~l~~l~~ 175 (796)
..+++-++|+|+++.......+.+...+....+.+.+|++|.++ .+...+... .+++.+++.
T Consensus 79 ----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~ 141 (305)
T 2gno_A 79 ----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVP 141 (305)
T ss_dssp ----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCC
T ss_pred ----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCH
Confidence 12467889999997766666677777777666677777777553 333333344 899999999
Q ss_pred HhHHHHHHHHh
Q 003773 176 EECWSLFKQVA 186 (796)
Q Consensus 176 ~e~~~lf~~~~ 186 (796)
++..+.+.+.+
T Consensus 142 ~~i~~~L~~~~ 152 (305)
T 2gno_A 142 KEFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998776
No 198
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.81 E-value=5.4e-05 Score=81.89 Aligned_cols=149 Identities=13% Similarity=0.095 Sum_probs=78.2
Q ss_pred ccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc---cC-C-eEEEEEeCCcCCHHHHHHH
Q 003773 13 LKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKR---KF-D-IVIWVCVSDAFEEIRIAKA 87 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~f-~-~~~wv~~~~~~~~~~~~~~ 87 (796)
.-+.+|||+.+++.++..+... ...-+.|+|++|+|||++|+.+++...... .. + .++.++++.
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~-~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~---------- 246 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRR-TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT---------- 246 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCS-SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--------------
T ss_pred CCCCccCcHHHHHHHHHHHhcc-CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc----------
Confidence 3456999999999777665432 233567999999999999999987621110 00 1 122333320
Q ss_pred HHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecchhhhh---c---
Q 003773 88 ILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDRSVAL---Q--- 161 (796)
Q Consensus 88 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~~~~---~--- 161 (796)
... +. ........+..+ -..++.++++|. ..+....+...+. ....++|.+|....... .
T Consensus 247 --~~~-g~--~e~~~~~~~~~~---~~~~~~iLfiD~----~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~a 312 (468)
T 3pxg_A 247 --KYR-GE--FEDRLKKVMDEI---RQAGNIILFIDA----AIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAA 312 (468)
T ss_dssp -----------CTTHHHHHHHH---HTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTTCSH
T ss_pred --ccc-ch--HHHHHHHHHHHH---HhcCCeEEEEeC----chhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHH
Confidence 000 00 011222222222 235678889992 1122222333332 12345666665443111 0
Q ss_pred -cCccceEEccCCChHhHHHHHHHHh
Q 003773 162 -MGSIDIISVKELGEEECWSLFKQVA 186 (796)
Q Consensus 162 -~~~~~~~~l~~l~~~e~~~lf~~~~ 186 (796)
......+.+.+.+.++..+++....
T Consensus 313 l~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 313 LERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHhCccceeCCCCHHHHHHHHHHHH
Confidence 1123479999999999999998764
No 199
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.77 E-value=3.8e-06 Score=88.07 Aligned_cols=59 Identities=17% Similarity=0.090 Sum_probs=30.2
Q ss_pred ccccceEecCCCCccc-----cchhhhccCCccEeecccccccc----ccchhhccccCCCeeecCCc
Q 003773 456 LIHLKYLNLSELCIER-----LPETLCELYNLQKLAVRWCTNLR----ELPAGIGKLMNMRSLMNGQT 514 (796)
Q Consensus 456 l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~ 514 (796)
.++|++|+|++|.++. ++..+..+++|++|+|++|.... .++..+...++|++|++++|
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 4456666666665542 33444555556666666554211 12334445555666666555
No 200
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.76 E-value=0.00028 Score=74.78 Aligned_cols=124 Identities=12% Similarity=0.134 Sum_probs=55.3
Q ss_pred CCCCCCCcEEEEeecCCCCCCchhhhccCCcEEEEcCCCCCCCCCc--cccc-cccceeccccccceEeCccccCCCCCC
Q 003773 619 LQPPLNVEELWILFYGGNIFPKWLTLLTNLRELKLFSCVNCEHLPP--LGKL-LLEKLTLYNLISVKRVGDEFLGIEESS 695 (796)
Q Consensus 619 l~~~~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~--l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~ 695 (796)
+..+.+|+++.+.......-...+..+++|+.+.+... +..++. +... +|+.+.+.. .++.++...
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~a------- 329 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPE--GITQILDDA------- 329 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECTTT-------
T ss_pred eeecccccEEecccccceecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCC--cccEehHhH-------
Confidence 34445666665533222111233446777888777532 333333 3333 455555532 233333221
Q ss_pred ccCCCCCCcccCCCccceeeccccccccccccccccccccCCCCccceeeccCCCCCCCCCcCCCCCCCccEEEEcC
Q 003773 696 VDDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLPDHLLQTTTLQELSIRG 772 (796)
Q Consensus 696 ~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~ 772 (796)
+.++.+|+.+.+.+ +++.+ ....|.++++|+.+.+.++... . ..+..+++|+.+.+..
T Consensus 330 ---------F~~C~~L~~i~ip~--sv~~I-----~~~aF~~C~~L~~i~~~~~~~~--~-~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 330 ---------FAGCEQLERIAIPS--SVTKI-----PESAFSNCTALNNIEYSGSRSQ--W-NAISTDSGLQNLPVAP 387 (394)
T ss_dssp ---------TTTCTTCCEEEECT--TCCBC-----CGGGGTTCTTCCEEEESSCHHH--H-HTCBCCCCC-------
T ss_pred ---------hhCCCCCCEEEECc--ccCEE-----hHhHhhCCCCCCEEEECCceee--h-hhhhccCCCCEEEeCC
Confidence 22556666665533 22222 1334566677777776665221 1 2344455666665544
No 201
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.76 E-value=6e-06 Score=74.86 Aligned_cols=91 Identities=10% Similarity=0.030 Sum_probs=54.2
Q ss_pred CCcEEEEcCCCCCC-CCCccccc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeeccccccccc
Q 003773 647 NLRELKLFSCVNCE-HLPPLGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIEDLDELEE 724 (796)
Q Consensus 647 ~L~~L~L~~~~~~~-~lp~l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~ 724 (796)
+|++||+++|.... .+..+..+ +|+.|+|++|..++..+....... ....++|++|++++|+++++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~------------~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQL------------ENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTC------------HHHHHHCCEEEEESCTTCCH
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhc------------ccccCCCCEEEcCCCCcCCH
Confidence 46666666664221 23334455 666666666665544332211100 00135789999999888877
Q ss_pred cccccccccccCCCCccceeeccCCCCCCC
Q 003773 725 WNYRVTRKENISIMPRLSSLEIDCCSKLNV 754 (796)
Q Consensus 725 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 754 (796)
..+ ..+..+++|++|+|++|+.++.
T Consensus 130 ~Gl-----~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 130 KGI-----IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHH-----HHGGGCTTCCEEEEESCTTCCC
T ss_pred HHH-----HHHhcCCCCCEEECCCCCCCCc
Confidence 654 2345689999999999987764
No 202
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.76 E-value=2.3e-05 Score=72.95 Aligned_cols=102 Identities=18% Similarity=0.241 Sum_probs=57.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCc
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGK 116 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 116 (796)
.+.++|+|++|+||||||+.++........+. +++++ ..++...+.......... .....+ . +
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~~~~~~-----~~~~~~----~-~ 100 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMDEGKDT-----KFLKTV----L-N 100 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHHHTCCS-----HHHHHH----H-T
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhcCchHH-----HHHHHh----c-C
Confidence 46899999999999999999988743222222 33333 344444444444322111 222222 1 4
Q ss_pred eEEEEEeCCCCCCccChh--hHhhhccCC-CCCcEEEEEecc
Q 003773 117 KFFLVLDDVWDGDFKKWD--PFFSCLKNG-HHESKILITTRD 155 (796)
Q Consensus 117 ~~LlvlDd~~~~~~~~~~--~l~~~~~~~-~~gs~iiiTsr~ 155 (796)
.-++||||++....+.|. .+...+... ..|..+|+||..
T Consensus 101 ~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 101 SPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp CSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 568899999743333332 233333221 246678888864
No 203
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.75 E-value=0.00054 Score=70.73 Aligned_cols=173 Identities=15% Similarity=0.085 Sum_probs=94.6
Q ss_pred CcccccHHHHHHHhccc------------CCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHH
Q 003773 15 LQIEGLDDDNTLALASS------------EQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEI 82 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~~------------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 82 (796)
+++.|-++.++.+.+.. .+-...+-|.++|++|+|||.+|+++++. .... .+.+..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~---f~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCK---FIRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCE---EEEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCC---ceEEEhHHhhc--
Confidence 45889888888433221 01234567889999999999999999987 3333 33444433211
Q ss_pred HHHHHHHHHhccCCCCCccHHHHHHHHHH-HhCCceEEEEEeCCCCCCc-------c---C----hhhHhhhccC--CCC
Q 003773 83 RIAKAILEVLDKSASSLGEFQSLMQQTQE-SIRGKKFFLVLDDVWDGDF-------K---K----WDPFFSCLKN--GHH 145 (796)
Q Consensus 83 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~LlvlDd~~~~~~-------~---~----~~~l~~~~~~--~~~ 145 (796)
.-..+....++.+.+ .-...+++|++|+++.... . . ...+...+.. ...
T Consensus 221 --------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 221 --------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp --------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred --------------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 001111112222221 2235689999999964210 0 0 1122222222 223
Q ss_pred CcEEEEEecchhh-----hhccCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCc
Q 003773 146 ESKILITTRDRSV-----ALQMGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLP 213 (796)
Q Consensus 146 gs~iiiTsr~~~~-----~~~~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 213 (796)
+..||.||...+. .+.......+++...+.++-.++|+.+.-+.. .....+ ..++++.+.|.-
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMN-LTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSB-CCSSCC----HHHHHHHCCSCC
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCC-CCccCC----HHHHHHHCCCCC
Confidence 4456666665432 22223467899999899888899987763211 111222 456778888754
No 204
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.73 E-value=2.3e-05 Score=74.44 Aligned_cols=100 Identities=19% Similarity=0.233 Sum_probs=53.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCce
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKK 117 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 117 (796)
+.+.|+|++|+|||++|+++++.. ......++|+.+. .+...+...... .........+. ..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~-----~~~~~~~~~~~----~~- 116 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL--AKRNVSSLIVYVP------ELFRELKHSLQD-----QTMNEKLDYIK----KV- 116 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH--HTTTCCEEEEEHH------HHHHHHHHC--------CCCHHHHHHHH----HS-
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEhH------HHHHHHHHHhcc-----chHHHHHHHhc----CC-
Confidence 688999999999999999999873 2333346666543 333444332211 11222233222 12
Q ss_pred EEEEEeCCCCCCccChh--hHhh-hccCC-CCCcEEEEEecc
Q 003773 118 FFLVLDDVWDGDFKKWD--PFFS-CLKNG-HHESKILITTRD 155 (796)
Q Consensus 118 ~LlvlDd~~~~~~~~~~--~l~~-~~~~~-~~gs~iiiTsr~ 155 (796)
-+|||||++......|. .+.. .+... ..+.++|+||..
T Consensus 117 ~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 117 PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 38999999664333332 1222 22111 234568888874
No 205
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.71 E-value=0.00027 Score=72.22 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=35.0
Q ss_pred cCcccccHHHHHHHhcccCC-------------CCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 14 KLQIEGLDDDNTLALASSEQ-------------QKGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 14 ~~~~vGr~~~~~~l~~~~~~-------------~~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...++|+++.++.+...... ......+.|+|++|+|||++|+.+++.
T Consensus 14 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45699999998855433211 123456889999999999999999876
No 206
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.70 E-value=7.1e-05 Score=76.63 Aligned_cols=118 Identities=14% Similarity=0.190 Sum_probs=63.2
Q ss_pred cCcccccHHHHHHHhcccC-------C-CCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHH
Q 003773 14 KLQIEGLDDDNTLALASSE-------Q-QKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIA 85 (796)
Q Consensus 14 ~~~~vGr~~~~~~l~~~~~-------~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 85 (796)
...++|.+..++.+..... . ......+.|+|++|+|||++|+.+++.. ...-..++.++++....... .
T Consensus 16 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~--~~~~~~~~~~~~~~~~~~~~-~ 92 (311)
T 4fcw_A 16 HKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL--FDTEEAMIRIDMTEYMEKHA-V 92 (311)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH--HSCGGGEEEEEGGGCCSTTH-H
T ss_pred hhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH--cCCCcceEEeeccccccccc-H
Confidence 4568999999884443321 1 1223589999999999999999998862 11112245566554322211 1
Q ss_pred HHHHHHhccCCCC--CccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhc
Q 003773 86 KAILEVLDKSASS--LGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCL 140 (796)
Q Consensus 86 ~~i~~~l~~~~~~--~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~ 140 (796)
. +.++..... ..........+. ....-++++|+++.........+...+
T Consensus 93 ~---~l~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~l 143 (311)
T 4fcw_A 93 S---RLIGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQML 143 (311)
T ss_dssp H---HHHCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHH
T ss_pred H---HhcCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHH
Confidence 1 112211110 010111222222 133469999999766555555555544
No 207
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.70 E-value=2.4e-05 Score=69.80 Aligned_cols=105 Identities=13% Similarity=0.062 Sum_probs=60.0
Q ss_pred CcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhcc
Q 003773 15 LQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDK 94 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 94 (796)
+.++|..++.-..+... .-+.++|+|+.|+|||||++.++...... .+ .++++........
T Consensus 18 ~f~~g~n~~~~~~l~~~----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~~~~~------------- 78 (149)
T 2kjq_A 18 KFLGTENAELVYVLRHK----HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAASMPLT------------- 78 (149)
T ss_dssp CCCSCCTHHHHHHCCCC----CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTTSCCC-------------
T ss_pred hcCcCccHHHHHHHHhc----CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHHhhHH-------------
Confidence 34556666655444433 33589999999999999999998863221 12 2566655432211
Q ss_pred CCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCC-CCCc-EEEEEecc
Q 003773 95 SASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNG-HHES-KILITTRD 155 (796)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~-~~gs-~iiiTsr~ 155 (796)
. +..+.-++|+||+.......-+.+...+... ..|. +||+||+.
T Consensus 79 ----------------~-~~~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 79 ----------------D-AAFEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp ----------------G-GGGGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred ----------------H-HHhCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 0 1124568899999653322223343333221 1233 48888874
No 208
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.00059 Score=71.58 Aligned_cols=173 Identities=17% Similarity=0.144 Sum_probs=88.9
Q ss_pred CcccccHHHHHHHhccc------------CCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHH
Q 003773 15 LQIEGLDDDNTLALASS------------EQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEI 82 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~~------------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 82 (796)
+++.|-++.++.+.+.. .+-...+-|.++|++|+|||++|+++++. .... .+.+..+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~~~---~~~v~~~~l~~-- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TKAA---FIRVNGSEFVH-- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HTCE---EEEEEGGGTCC--
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---eEEEecchhhc--
Confidence 46889998888443321 02234567899999999999999999987 3322 33444433111
Q ss_pred HHHHHHHHHhccCCCCCccHHHHHHHHH-HHhCCceEEEEEeCCCCC-------C--cc-C----hhhHhhhcc--CCCC
Q 003773 83 RIAKAILEVLDKSASSLGEFQSLMQQTQ-ESIRGKKFFLVLDDVWDG-------D--FK-K----WDPFFSCLK--NGHH 145 (796)
Q Consensus 83 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~LlvlDd~~~~-------~--~~-~----~~~l~~~~~--~~~~ 145 (796)
....+....++.+. ..-...++++++|+++.. . .+ . ...+...+. ....
T Consensus 245 --------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~ 310 (428)
T 4b4t_K 245 --------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST 310 (428)
T ss_dssp --------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC
T ss_pred --------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC
Confidence 00111111112221 122356899999998420 0 00 1 112222222 1234
Q ss_pred CcEEEEEecchh-----hhhccCccceEEccCCC-hHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCc
Q 003773 146 ESKILITTRDRS-----VALQMGSIDIISVKELG-EEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLP 213 (796)
Q Consensus 146 gs~iiiTsr~~~-----~~~~~~~~~~~~l~~l~-~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 213 (796)
+..||.||...+ +.+.......+++..++ .++-.++|+.+.-+- ......+ ...+++.+.|.-
T Consensus 311 ~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~-~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 311 NVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKM-SLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp SEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSS-CBCTTCC----HHHHHHHTTTCC
T ss_pred CEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCC-CCCcccC----HHHHHHHCCCCC
Confidence 455666776533 22222234578887664 455555676655322 1112222 355777777754
No 209
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.66 E-value=1.3e-05 Score=83.31 Aligned_cols=63 Identities=11% Similarity=0.087 Sum_probs=34.8
Q ss_pred ccccccceEEEeccccCCCCCcCccCchhHHHHHhhCCCCCCCcEEEEeecCCCCCCchhhhccC--CcEEEEcCCC
Q 003773 583 NKKNLLRLHLEFGRVVDGEGEEGRRKNEKDKQLLEALQPPLNVEELWILFYGGNIFPKWLTLLTN--LRELKLFSCV 657 (796)
Q Consensus 583 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~l~~--L~~L~L~~~~ 657 (796)
.+++|+.|+++.|.+.+ .....+...+..+++|+.|++++|.+. +.....+.. ...++++++.
T Consensus 277 ~~~~L~~LdLs~n~L~d----------~G~~~L~~~L~~l~~L~~L~L~~n~i~--d~~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTD----------EGARLLLDHVDKIKHLKFINMKYNYLS--DEMKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp SGGGCSEEECCSSCCBH----------HHHHHHHTTHHHHTTCSEEECCSBBCC--HHHHHHHHHHCCSEEECCSBC
T ss_pred cCCCCCEEECCCCCCCh----------HHHHHHHhhcccCCcceEEECCCCcCC--HHHHHHHHHHcCCEEEecCCc
Confidence 45677777776665322 223445555556677777877777654 233333332 2556666553
No 210
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.66 E-value=1.9e-05 Score=77.50 Aligned_cols=79 Identities=20% Similarity=0.153 Sum_probs=51.8
Q ss_pred cCccccceEecCCCCccccc---hhhhccCCccEeeccccccccccchhhcccc--CCCeeecCCccccccCcc------
Q 003773 454 GKLIHLKYLNLSELCIERLP---ETLCELYNLQKLAVRWCTNLRELPAGIGKLM--NMRSLMNGQTEKLKYLPI------ 522 (796)
Q Consensus 454 ~~l~~L~~L~l~~~~i~~lp---~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~--~L~~L~l~~~~~~~~~p~------ 522 (796)
.++++|+.|+|++|.+..++ ..+.++++|+.|+|++|. +..+ ..+..+. +|++|++++|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 45778888888888877543 556678888888888776 4443 2344444 788888888865544442
Q ss_pred -cCCCCCCcccCC
Q 003773 523 -GISRLTSLRTLE 534 (796)
Q Consensus 523 -~i~~l~~L~~L~ 534 (796)
.+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 245566666665
No 211
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.65 E-value=0.0002 Score=77.23 Aligned_cols=181 Identities=13% Similarity=0.051 Sum_probs=96.7
Q ss_pred cCcccccHHHHHHHhcccCC------------CCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCH
Q 003773 14 KLQIEGLDDDNTLALASSEQ------------QKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEE 81 (796)
Q Consensus 14 ~~~~vGr~~~~~~l~~~~~~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 81 (796)
-.+++|.+..++.+.+.... ....+-|.|+|++|+|||++|+++++. ... .++.++++.
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~---~fv~vn~~~---- 273 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGA---FFFLINGPE---- 273 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSS---EEEEEEHHH----
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCC---CEEEEEchH----
Confidence 34689999999855443211 233456889999999999999999876 222 234444321
Q ss_pred HHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCc-----------cChhhHhhhccC--CCCCcE
Q 003773 82 IRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDF-----------KKWDPFFSCLKN--GHHESK 148 (796)
Q Consensus 82 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~-----------~~~~~l~~~~~~--~~~gs~ 148 (796)
+. ..+ . ..........+.....+++.+|+||+++.... .....+...+.. ......
T Consensus 274 --l~----~~~----~-g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 274 --IM----SKL----A-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp --HH----TSC----T-THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred --hh----hhh----c-chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 11 000 0 00111122223333446678999999843110 111223333322 223445
Q ss_pred EEEEecchhh-----hhccCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCC-chhHHHH
Q 003773 149 ILITTRDRSV-----ALQMGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGL-PLAAKVI 219 (796)
Q Consensus 149 iiiTsr~~~~-----~~~~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~ 219 (796)
||.||..... .+.......+.+...+.++-.++|+.++..... ..... ..++++.+.|. +-.+..+
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhh----HHHHHHHccCCcHHHHHHH
Confidence 6666665421 111123347889999999999999887632111 11112 35577777775 4334433
No 212
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.64 E-value=0.00078 Score=66.52 Aligned_cols=182 Identities=13% Similarity=0.041 Sum_probs=92.2
Q ss_pred cccCcccccHHHHHHHhc---ccCC--------CCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCC
Q 003773 12 RLKLQIEGLDDDNTLALA---SSEQ--------QKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFE 80 (796)
Q Consensus 12 ~~~~~~vGr~~~~~~l~~---~~~~--------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 80 (796)
..-.+++|.+..++.+.+ .... ....+-+.|+|++|+||||+|+.+++. .... .+.++.+.-.+
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~i~~~~~~~ 83 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVP---FFTISGSDFVE 83 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCC---EEEECSCSSTT
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCC---EEEEeHHHHHH
Confidence 345579999988883322 1110 112345889999999999999999876 2222 23343322110
Q ss_pred HHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCc----------c----ChhhHhhhccC--CC
Q 003773 81 EIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDF----------K----KWDPFFSCLKN--GH 144 (796)
Q Consensus 81 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~----------~----~~~~l~~~~~~--~~ 144 (796)
.. ...........+.......+.++++|+++.... . ....+...+.. ..
T Consensus 84 ----------~~-----~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 84 ----------MF-----VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp ----------SC-----CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred ----------Hh-----hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 00 001112222223333345678999999833110 0 01112222221 12
Q ss_pred CCcEEEEEecchhhh-hcc----CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCC-CchhHHH
Q 003773 145 HESKILITTRDRSVA-LQM----GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKG-LPLAAKV 218 (796)
Q Consensus 145 ~gs~iiiTsr~~~~~-~~~----~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~PLal~~ 218 (796)
.+..||.||...+.. ... .....+.+...+.++-.++++...... ....... ...+++.+.| .+--|..
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~-~l~~~~~----~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV-PLAPDID----AAIIARGTPGFSGADLAN 223 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS-CBCTTCC----HHHHHHTCTTCCHHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC-CCCcccc----HHHHHHHcCCCCHHHHHH
Confidence 344566666654321 111 123477788888888888887765221 1111111 3456777777 5544443
No 213
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.001 Score=69.84 Aligned_cols=173 Identities=14% Similarity=0.097 Sum_probs=94.3
Q ss_pred CcccccHHHHHHHhccc------------CCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHH
Q 003773 15 LQIEGLDDDNTLALASS------------EQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEI 82 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~~------------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 82 (796)
+++.|-++.++.+.+.. .+-...+-|.++|++|+|||.+|+++++. .... .+.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~---~~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGAN---FIFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehhhhcc--
Confidence 45889988888433221 01234578899999999999999999987 3222 33444432211
Q ss_pred HHHHHHHHHhccCCCCCccHHHHHHHHHH-HhCCceEEEEEeCCCCCC------ccC--------hhhHhhhccC--CCC
Q 003773 83 RIAKAILEVLDKSASSLGEFQSLMQQTQE-SIRGKKFFLVLDDVWDGD------FKK--------WDPFFSCLKN--GHH 145 (796)
Q Consensus 83 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~LlvlDd~~~~~------~~~--------~~~l~~~~~~--~~~ 145 (796)
....+....+..+.. .-...+++|++|+++... ... ...+...+.. ...
T Consensus 254 --------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 254 --------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp --------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred --------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 001111111222221 223578999999996421 000 1122222222 223
Q ss_pred CcEEEEEecchhhhhc-----cCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCc
Q 003773 146 ESKILITTRDRSVALQ-----MGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLP 213 (796)
Q Consensus 146 gs~iiiTsr~~~~~~~-----~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 213 (796)
+..||.||...+..+. ......+++...+.++-.++|+.+...... ....+ ...+++.+.|+-
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCC----HHHHHHTCCSCC
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhCCCCC
Confidence 4567777765433221 123457888888888888888877633221 11222 356778888754
No 214
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.60 E-value=1.4e-05 Score=71.01 Aligned_cols=110 Identities=11% Similarity=-0.012 Sum_probs=58.8
Q ss_pred CcccccHHHHHHHhcccCC-CCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhc
Q 003773 15 LQIEGLDDDNTLALASSEQ-QKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLD 93 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 93 (796)
.+++|++..++.+.+.... .....-|.|+|++|+|||++|+.+++... ..+.++++.. .....
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~~--~~~~~-------- 67 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVEY--LIDMP-------- 67 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTTH--HHHCH--------
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhhC--ChHhh--------
Confidence 4689999998855543210 01223577999999999999999887622 2333333221 01110
Q ss_pred cCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCC-CCCcEEEEEecc
Q 003773 94 KSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNG-HHESKILITTRD 155 (796)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~-~~gs~iiiTsr~ 155 (796)
..+.+.. +.-.+++|+++....+....+...+... ..+.++|.||..
T Consensus 68 -------------~~~~~~a--~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 68 -------------MELLQKA--EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp -------------HHHHHHT--TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred -------------hhHHHhC--CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 1111111 2346889999765544444555444332 345678877753
No 215
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.60 E-value=0.00012 Score=72.89 Aligned_cols=62 Identities=16% Similarity=0.069 Sum_probs=36.7
Q ss_pred cCcccccHHHHHHHhcccCC-CCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCC
Q 003773 14 KLQIEGLDDDNTLALASSEQ-QKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSD 77 (796)
Q Consensus 14 ~~~~vGr~~~~~~l~~~~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 77 (796)
-+.|+|++..+..+.+.... ......|.|+|++|+|||++|+.+++... ..-...+.++++.
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~--~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAA 67 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST--TTTSCEEEEEGGG
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC--ccCCCeEEEecCC
Confidence 34689999988855433210 11224677999999999999999987632 1112345566654
No 216
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.55 E-value=8.2e-05 Score=72.98 Aligned_cols=84 Identities=17% Similarity=0.096 Sum_probs=65.4
Q ss_pred HHhhhcCcccceeeecccccCCCcccccccc---cccccCccccceEecCCCCccccchhhhccC--CccEeeccccccc
Q 003773 419 VELFSKVACLRALVIRQWFVPLDDQNFIREI---PENIGKLIHLKYLNLSELCIERLPETLCELY--NLQKLAVRWCTNL 493 (796)
Q Consensus 419 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l---p~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~--~L~~L~l~~~~~~ 493 (796)
..+..++++|+.|+|+ +|.+..+ |..+..+++|++|+|++|.|..+. .+..+. +|++|+|++|+..
T Consensus 163 ~i~~~~l~~L~~L~Ls--------~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 163 RIIEENIPELLSLNLS--------NNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHHHHHCTTCCEEECT--------TSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTG
T ss_pred HHHHhhCCCCCEEECC--------CCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCc
Confidence 3344779999999999 6666554 466778999999999999999773 355555 9999999999855
Q ss_pred cccch-------hhccccCCCeeec
Q 003773 494 RELPA-------GIGKLMNMRSLMN 511 (796)
Q Consensus 494 ~~lp~-------~~~~l~~L~~L~l 511 (796)
..+|. .+..+++|+.|+-
T Consensus 234 ~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 234 DTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred cccCcchhHHHHHHHHCcccCeECC
Confidence 55552 3678999999974
No 217
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.51 E-value=0.00073 Score=78.29 Aligned_cols=158 Identities=14% Similarity=0.113 Sum_probs=86.5
Q ss_pred ccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc----cCCeEEE-EEeCCcCCHHHHHHH
Q 003773 13 LKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKR----KFDIVIW-VCVSDAFEEIRIAKA 87 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~w-v~~~~~~~~~~~~~~ 87 (796)
.-+.++||+.+++.+++.+... ...-+.|+|++|+|||++|+.+++...... .....+| ++.+.-
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~-~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l--------- 253 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRR-RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL--------- 253 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS-SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-----------
T ss_pred CCCCccCCHHHHHHHHHHHhcc-CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH---------
Confidence 3457999999999877765433 334567999999999999999987631111 1222222 221110
Q ss_pred HHHHhccCCCCCccHHHHHHHHHHHh-CCceEEEEEeCCCCCC--------ccChhhHhhhccCCCCCcEEEEEecchhh
Q 003773 88 ILEVLDKSASSLGEFQSLMQQTQESI-RGKKFFLVLDDVWDGD--------FKKWDPFFSCLKNGHHESKILITTRDRSV 158 (796)
Q Consensus 88 i~~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~LlvlDd~~~~~--------~~~~~~l~~~~~~~~~gs~iiiTsr~~~~ 158 (796)
... .....+..+....+.+.+ ..++.++++|+++... ..+...+...+.. ..+.++|.+|...+.
T Consensus 254 ----~~~-~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~~~~ 327 (758)
T 1r6b_X 254 ----LAG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEF 327 (758)
T ss_dssp -----CC-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHHHH
T ss_pred ----hcc-ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCchHH
Confidence 000 111223333333333333 3457899999996431 1111112222222 234566666665432
Q ss_pred hhcc-------CccceEEccCCChHhHHHHHHHHh
Q 003773 159 ALQM-------GSIDIISVKELGEEECWSLFKQVA 186 (796)
Q Consensus 159 ~~~~-------~~~~~~~l~~l~~~e~~~lf~~~~ 186 (796)
.... .....+.+...+.++..+++....
T Consensus 328 ~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 328 SNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 1111 123478899999999988887654
No 218
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.48 E-value=0.0018 Score=68.62 Aligned_cols=106 Identities=13% Similarity=0.225 Sum_probs=68.4
Q ss_pred hhhccCCcEEEEcCCCCCCCCCc--cccc-cccceeccccccceEeCccccCCCCCCccCCCCCCcccCCCccceeeccc
Q 003773 642 LTLLTNLRELKLFSCVNCEHLPP--LGKL-LLEKLTLYNLISVKRVGDEFLGIEESSVDDTSSSSSVIAFPKLKSLKIED 718 (796)
Q Consensus 642 ~~~l~~L~~L~L~~~~~~~~lp~--l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 718 (796)
+..+.+|+.+.+.++. ..+.. +... .|+.+.+. ..+..++... +.++.+|+.+.|.+
T Consensus 261 F~~c~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~a----------------F~~c~~L~~i~lp~ 320 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV--VSIGTGAFMNCPALQDIEFS--SRITELPESV----------------FAGCISLKSIDIPE 320 (394)
T ss_dssp TTTCSSCCEEECCTTC--CEECTTTTTTCTTCCEEECC--TTCCEECTTT----------------TTTCTTCCEEECCT
T ss_pred eeecccccEEeccccc--ceecCcccccccccccccCC--CcccccCcee----------------ecCCCCcCEEEeCC
Confidence 4467888888886542 22222 3333 56666664 2344444332 34678899987754
Q ss_pred cccccccccccccccccCCCCccceeeccCCCCCCCCCc-CCCCCCCccEEEEcCCCch
Q 003773 719 LDELEEWNYRVTRKENISIMPRLSSLEIDCCSKLNVLPD-HLLQTTTLQELSIRGCPIL 776 (796)
Q Consensus 719 ~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~l 776 (796)
+++.+ ....|..+++|+.+.|-.+ ++.++. .+.+|++|+.+++.++...
T Consensus 321 --~v~~I-----~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~ 370 (394)
T 4gt6_A 321 --GITQI-----LDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQ 370 (394)
T ss_dssp --TCCEE-----CTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHH
T ss_pred --cccEe-----hHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCceee
Confidence 33333 2456788999999999754 667754 5778999999999987643
No 219
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.47 E-value=0.0003 Score=81.43 Aligned_cols=149 Identities=13% Similarity=0.092 Sum_probs=78.9
Q ss_pred ccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccc-c---CCe-EEEEEeCCcCCHHHHHHH
Q 003773 13 LKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKR-K---FDI-VIWVCVSDAFEEIRIAKA 87 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~---f~~-~~wv~~~~~~~~~~~~~~ 87 (796)
.-+.+|||+++++.+...+... ...-+.++|++|+|||++|+.+++...... . .+. ++.++.+.
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~-~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~---------- 246 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRR-TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT---------- 246 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCS-SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--------------
T ss_pred CCCCccCchHHHHHHHHHHhCC-CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccc----------
Confidence 3457999999999777665432 223467999999999999999987621100 0 111 22222200
Q ss_pred HHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecchhhhh--cc---
Q 003773 88 ILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDRSVAL--QM--- 162 (796)
Q Consensus 88 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~~~~--~~--- 162 (796)
... + ........... .....++.+|++|.. .+....+...+. ....++|.||....... ..
T Consensus 247 --~~~-G--~~e~~l~~~~~---~~~~~~~~iLfiD~~----~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~a 312 (758)
T 3pxi_A 247 --KYR-G--EFEDRLKKVMD---EIRQAGNIILFIDAA----IDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAA 312 (758)
T ss_dssp -----------CTTHHHHHH---HHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTTCSH
T ss_pred --ccc-c--hHHHHHHHHHH---HHHhcCCEEEEEcCc----hhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHH
Confidence 000 0 01112222222 233467789999921 122222332222 23456776666544211 00
Q ss_pred --CccceEEccCCChHhHHHHHHHHh
Q 003773 163 --GSIDIISVKELGEEECWSLFKQVA 186 (796)
Q Consensus 163 --~~~~~~~l~~l~~~e~~~lf~~~~ 186 (796)
.....+.+...+.++..+++....
T Consensus 313 l~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 313 LERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 123579999999999999998654
No 220
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.45 E-value=5.5e-05 Score=70.49 Aligned_cols=97 Identities=13% Similarity=0.070 Sum_probs=64.3
Q ss_pred hhhHHHhhhcCcccceeeeccc-ccCCCcccccccccccccCccccceEecCCCCcc-----ccchhhhccCCccEeecc
Q 003773 415 GSILVELFSKVACLRALVIRQW-FVPLDDQNFIREIPENIGKLIHLKYLNLSELCIE-----RLPETLCELYNLQKLAVR 488 (796)
Q Consensus 415 ~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~ 488 (796)
.+.....+...+.|+.|+|+++ .+.. .....+...+...++|++|+|++|.|. .+...+...++|++|+|+
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~---~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~ 101 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPV---PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVE 101 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCH---HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCH---HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECc
Confidence 3445566777888888888842 2210 112234555667788888888888876 345556667888888888
Q ss_pred ccccccc----cchhhccccCCCeeec--CCc
Q 003773 489 WCTNLRE----LPAGIGKLMNMRSLMN--GQT 514 (796)
Q Consensus 489 ~~~~~~~----lp~~~~~l~~L~~L~l--~~~ 514 (796)
+|..... +...+...++|++|++ ++|
T Consensus 102 ~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N 133 (185)
T 1io0_A 102 SNFISGSGILALVEALQSNTSLIELRIDNQSQ 133 (185)
T ss_dssp SSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS
T ss_pred CCcCCHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 8763322 4455667778888888 666
No 221
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.0021 Score=67.30 Aligned_cols=173 Identities=15% Similarity=0.061 Sum_probs=93.3
Q ss_pred CcccccHHHHHHHhccc------------CCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHH
Q 003773 15 LQIEGLDDDNTLALASS------------EQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEI 82 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~~------------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 82 (796)
+++.|-++.++.|.+.. .+-...+-|.++|++|+|||.+|+++++. .... .+.+..+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~---fi~vs~s~L~s-- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDAT---FIRVIGSELVQ-- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGGCC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCC---eEEEEhHHhhc--
Confidence 46889988888443321 11235678889999999999999999987 3322 33444332111
Q ss_pred HHHHHHHHHhccCCCCCccHHHHHHHHH-HHhCCceEEEEEeCCCCCCc------cC--------hhhHhhhccCC--CC
Q 003773 83 RIAKAILEVLDKSASSLGEFQSLMQQTQ-ESIRGKKFFLVLDDVWDGDF------KK--------WDPFFSCLKNG--HH 145 (796)
Q Consensus 83 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~LlvlDd~~~~~~------~~--------~~~l~~~~~~~--~~ 145 (796)
....+....++.+. ..-...+++|++|+++.... .. ...+...+... ..
T Consensus 282 --------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 282 --------------KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp --------------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred --------------ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 00111111222222 12235689999999964210 00 01122222222 23
Q ss_pred CcEEEEEecchhh-----hhccCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCc
Q 003773 146 ESKILITTRDRSV-----ALQMGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLP 213 (796)
Q Consensus 146 gs~iiiTsr~~~~-----~~~~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 213 (796)
+..||.||...+. .+.......+++...+.++-.++|+.+...-. .....+ ...+++.+.|.-
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~-l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS-VERGIR----WELISRLCPNST 415 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC-BCSSCC----HHHHHHHCCSCC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC-CCCCCC----HHHHHHHCCCCC
Confidence 3445556654332 22223456888888888888889987763211 111122 355778888754
No 222
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.44 E-value=0.0019 Score=69.05 Aligned_cols=176 Identities=11% Similarity=0.023 Sum_probs=94.5
Q ss_pred ccCcccccHHHHHHHhcc---cCC--------CCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCH
Q 003773 13 LKLQIEGLDDDNTLALAS---SEQ--------QKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEE 81 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~---~~~--------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 81 (796)
.-.+++|.++.++++.+. ... ..-.+-|.|+|++|+|||++|++++.. .... .+.++++.....
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~---f~~is~~~~~~~ 88 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVP---FFHISGSDFVEL 88 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCC---EEEEEGGGTTTC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCC---eeeCCHHHHHHH
Confidence 445799999988743321 110 112345889999999999999999986 2222 234443322110
Q ss_pred HHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCcc--------------ChhhHhhhccC--CCC
Q 003773 82 IRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFK--------------KWDPFFSCLKN--GHH 145 (796)
Q Consensus 82 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~--------------~~~~l~~~~~~--~~~ 145 (796)
. ...........+.+.....+.+|++|+++..... ....+...+.. ...
T Consensus 89 ----------~-----~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~ 153 (476)
T 2ce7_A 89 ----------F-----VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKE 153 (476)
T ss_dssp ----------C-----TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGG
T ss_pred ----------H-----hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCC
Confidence 0 0001112222333344567899999999552110 11222222221 123
Q ss_pred CcEEEEEecchhhhhc--c---CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCc
Q 003773 146 ESKILITTRDRSVALQ--M---GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLP 213 (796)
Q Consensus 146 gs~iiiTsr~~~~~~~--~---~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 213 (796)
+..||.||...+.... . .....+.+...+.++-.++++.++.... ...... ...+++.+.|+.
T Consensus 154 ~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~-l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 154 GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP-LAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCC
T ss_pred CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC-Ccchhh----HHHHHHhcCCCc
Confidence 4556667766543221 1 2234788888888888888877663211 111111 345788888877
No 223
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.40 E-value=4.7e-05 Score=76.05 Aligned_cols=154 Identities=12% Similarity=0.066 Sum_probs=79.3
Q ss_pred ccCcccccHHHHHHHhcccC-----------CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCH
Q 003773 13 LKLQIEGLDDDNTLALASSE-----------QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEE 81 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 81 (796)
.-.+++|.++.++.+.+... +....+-+.|+|++|+|||++|+++++. ....|- .+.++.-.+
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~~---~v~~~~~~~- 82 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPFF---SMGGSSFIE- 82 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH--HTCCCC---CCCSCTTTT-
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCEE---EechHHHHH-
Confidence 44679999988884433211 0112234789999999999999999886 222321 111111100
Q ss_pred HHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCc---------------cChhhHhhhccCC---
Q 003773 82 IRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDF---------------KKWDPFFSCLKNG--- 143 (796)
Q Consensus 82 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~---------------~~~~~l~~~~~~~--- 143 (796)
...+.. .......... .....+.+|++|+++.... .....+...+...
T Consensus 83 ---------~~~~~~--~~~~~~~~~~---a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (268)
T 2r62_A 83 ---------MFVGLG--ASRVRDLFET---AKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE 148 (268)
T ss_dssp ---------SCSSSC--SSSSSTTHHH---HHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS
T ss_pred ---------hhcchH--HHHHHHHHHH---HHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC
Confidence 000100 0111111221 1223567999999954211 1122233322221
Q ss_pred CCCcEEEEEecchhh-----hhccCccceEEccCCChHhHHHHHHHHh
Q 003773 144 HHESKILITTRDRSV-----ALQMGSIDIISVKELGEEECWSLFKQVA 186 (796)
Q Consensus 144 ~~gs~iiiTsr~~~~-----~~~~~~~~~~~l~~l~~~e~~~lf~~~~ 186 (796)
.....||.||..... .+.......+.+...+.++..++++..+
T Consensus 149 ~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 149 NAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp CSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 122446666665432 1111223568888889899888887765
No 224
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.38 E-value=0.00074 Score=72.81 Aligned_cols=97 Identities=12% Similarity=0.024 Sum_probs=58.1
Q ss_pred EEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEe---------cc----h-hhh-hccCccceEEccCCChHhHHHHH
Q 003773 118 FFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITT---------RD----R-SVA-LQMGSIDIISVKELGEEECWSLF 182 (796)
Q Consensus 118 ~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTs---------r~----~-~~~-~~~~~~~~~~l~~l~~~e~~~lf 182 (796)
-++++|+++..+.+..+.+...+...... -+|+.| .+ . .+. ........+.+.+++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 38999999776666677777766654433 344344 11 1 000 01122346799999999999999
Q ss_pred HHHhhCCCCCCCCcchhHHHHHHHHhc-CCCchhHHHH
Q 003773 183 KQVAFLGRSFEDCEKLEPIGRKIACKC-KGLPLAAKVI 219 (796)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~PLal~~~ 219 (796)
...+...... -..+.+..|++.+ +|.|.....+
T Consensus 376 ~~~~~~~~~~----~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 376 KIRAQTEGIN----ISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHTCC----BCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHhCCC----CCHHHHHHHHHHccCCCHHHHHHH
Confidence 8776321111 1244567788887 7777644433
No 225
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.0012 Score=69.20 Aligned_cols=174 Identities=14% Similarity=0.088 Sum_probs=92.6
Q ss_pred cCcccccHHHHHHHhccc------------CCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCH
Q 003773 14 KLQIEGLDDDNTLALASS------------EQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEE 81 (796)
Q Consensus 14 ~~~~vGr~~~~~~l~~~~------------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 81 (796)
-+++.|-++.++.+.+.. .+-...+-|.++|++|+|||.+|+++++. .... .+.+..+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~---f~~v~~s~l~~- 253 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNAT---FLKLAAPQLVQ- 253 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGGCS-
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCC---EEEEehhhhhh-
Confidence 346889998888443321 11234578899999999999999999987 3222 33444332111
Q ss_pred HHHHHHHHHHhccCCCCCccHHHHHHHHHH-HhCCceEEEEEeCCCCC-----C--cc---Ch----hhHhhhccCC--C
Q 003773 82 IRIAKAILEVLDKSASSLGEFQSLMQQTQE-SIRGKKFFLVLDDVWDG-----D--FK---KW----DPFFSCLKNG--H 144 (796)
Q Consensus 82 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~LlvlDd~~~~-----~--~~---~~----~~l~~~~~~~--~ 144 (796)
....+....++.+.. .-...+++|++|+++.. . .. .. ..+...+... .
T Consensus 254 ---------------~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~ 318 (434)
T 4b4t_M 254 ---------------MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD 318 (434)
T ss_dssp ---------------SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS
T ss_pred ---------------cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC
Confidence 001111112222221 11245799999998431 0 00 11 1222223322 2
Q ss_pred CCcEEEEEecchhhhh-----ccCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCc
Q 003773 145 HESKILITTRDRSVAL-----QMGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLP 213 (796)
Q Consensus 145 ~gs~iiiTsr~~~~~~-----~~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 213 (796)
.+..||.||...+..+ .......+++...+.++-.++|+.+...-.. ....+ ..++++.+.|+-
T Consensus 319 ~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 319 DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDIN----WQELARSTDEFN 387 (434)
T ss_dssp CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCC----HHHHHHHCSSCC
T ss_pred CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCC----HHHHHHhCCCCC
Confidence 3344555666543322 1123568888888888888888766532211 11122 355777887754
No 226
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.35 E-value=0.00015 Score=73.35 Aligned_cols=46 Identities=15% Similarity=0.113 Sum_probs=33.1
Q ss_pred CcccccHHHHHHHhcccCC-CCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 15 LQIEGLDDDNTLALASSEQ-QKGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
+.++|++..++.+.+.... ......|.|+|++|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 4689999998855543211 122345779999999999999999875
No 227
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.34 E-value=0.0013 Score=67.57 Aligned_cols=175 Identities=17% Similarity=0.134 Sum_probs=90.8
Q ss_pred ccCcccccHHHHHHHhcccC----CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHH
Q 003773 13 LKLQIEGLDDDNTLALASSE----QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAI 88 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 88 (796)
.-.++||++..++.+-.... .+.....++|+|++|+||||||+.++... ...|. .....-......
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l--~~~~~---~~sg~~~~~~~~----- 92 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL--QTNIH---VTSGPVLVKQGD----- 92 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH--TCCEE---EEETTTCCSHHH-----
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh--CCCEE---EEechHhcCHHH-----
Confidence 44568999877774332211 12234678999999999999999998862 21111 111111011111
Q ss_pred HHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCC------------------CCcEEE
Q 003773 89 LEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGH------------------HESKIL 150 (796)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~------------------~gs~ii 150 (796)
.. .+...+. ++-++++|++........+.+...+.... +...++
T Consensus 93 ----------------l~-~~~~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 93 ----------------MA-AILTSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp ----------------HH-HHHHHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEE
T ss_pred ----------------HH-HHHHHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 11 1111122 33467788875432222233322221110 011233
Q ss_pred E-EecchhhhhccC--ccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCchhHHHH
Q 003773 151 I-TTRDRSVALQMG--SIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKVI 219 (796)
Q Consensus 151 i-Tsr~~~~~~~~~--~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 219 (796)
- |++...+..... ..-.+.+.+.+.++-.+++++.+..... .-..+.+..|++.+.|.|-.+..+
T Consensus 155 ~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~----~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 155 GATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV----EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred EecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHhcCCChHHHHHH
Confidence 2 333322211111 1225789999999999999887632221 122456888999999999755443
No 228
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.27 E-value=0.00038 Score=80.54 Aligned_cols=151 Identities=15% Similarity=0.212 Sum_probs=83.2
Q ss_pred CcccccHHHHHHHhccc-------CC-CCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHH
Q 003773 15 LQIEGLDDDNTLALASS-------EQ-QKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAK 86 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~~-------~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 86 (796)
..++|.+..++.+.... .. ......+.++|++|+|||++|+++++.. ...-...+.++++.-.+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l--~~~~~~~i~i~~s~~~~~~~--- 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI--FGDEESMIRIDMSEYMEKHS--- 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH--HSCTTCEEEEEGGGGCSSCC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCCcceEEEechhcccccc---
Confidence 46899999887443321 11 1223479999999999999999998762 22223355666554221000
Q ss_pred HHHHHhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCC-----------CCCcEEEEEecc
Q 003773 87 AILEVLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNG-----------HHESKILITTRD 155 (796)
Q Consensus 87 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~-----------~~gs~iiiTsr~ 155 (796)
.. .......+++ ...-+|+||+++....+....+...+..+ ....+||+||..
T Consensus 566 ----------~~---~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 566 ----------TS---GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ----------CC------CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ----------cc---cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 00 0111111111 23348999999776655555555554331 134578888873
Q ss_pred h-----h----hhhcc------CccceEEccCCChHhHHHHHHHHh
Q 003773 156 R-----S----VALQM------GSIDIISVKELGEEECWSLFKQVA 186 (796)
Q Consensus 156 ~-----~----~~~~~------~~~~~~~l~~l~~~e~~~lf~~~~ 186 (796)
. . +...+ .-...+.+.+++.++..+++....
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 1 0 00011 112488899999988877776544
No 229
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.0037 Score=64.82 Aligned_cols=173 Identities=14% Similarity=0.099 Sum_probs=91.8
Q ss_pred CcccccHHHHHHHhccc------------CCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHH
Q 003773 15 LQIEGLDDDNTLALASS------------EQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEI 82 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~~------------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 82 (796)
+++-|-++.++++.+.. .+-...+-|.++|++|+|||.+|+++++. .... .+.+..+.-.+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~---fi~v~~s~l~s-- 254 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSAT---FLRIVGSELIQ-- 254 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCE---EEEEESGGGCC--
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCC---EEEEEHHHhhh--
Confidence 45788988888443321 11234577899999999999999999987 3322 23333332110
Q ss_pred HHHHHHHHHhccCCCCCccHHHHHHHHHHH-hCCceEEEEEeCCCCCC------cc----C----hhhHhhhcc--CCCC
Q 003773 83 RIAKAILEVLDKSASSLGEFQSLMQQTQES-IRGKKFFLVLDDVWDGD------FK----K----WDPFFSCLK--NGHH 145 (796)
Q Consensus 83 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~LlvlDd~~~~~------~~----~----~~~l~~~~~--~~~~ 145 (796)
....+....++.+... -...+++|++|+++... .. . ...+...+. ....
T Consensus 255 --------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 255 --------------KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp --------------SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred --------------ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 0111112222222221 23568999999985411 00 0 111222221 1223
Q ss_pred CcEEEEEecchhhhhc-c----CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCc
Q 003773 146 ESKILITTRDRSVALQ-M----GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLP 213 (796)
Q Consensus 146 gs~iiiTsr~~~~~~~-~----~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 213 (796)
+..||.||...+..+. + ..+..+++...+.++-.++|+.+.... ......+ ...+++.+.|+-
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~-~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM-NLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS-CBCSCCC----HHHHHHHCCSCC
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC-CCCCcCC----HHHHHHhCCCCC
Confidence 4456667665443222 1 224578888888888888888776321 1112222 355777777754
No 230
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.16 E-value=0.0038 Score=62.72 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=22.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...+.+.++|++|+|||++|+++++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568889999999999999999987
No 231
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.05 E-value=0.00049 Score=63.96 Aligned_cols=95 Identities=16% Similarity=0.024 Sum_probs=68.0
Q ss_pred HHHhhhcCcccceeeecccccCCCcccccccccccccCccccceEecCCCCccc-----cchhhhccCCccEeec--ccc
Q 003773 418 LVELFSKVACLRALVIRQWFVPLDDQNFIREIPENIGKLIHLKYLNLSELCIER-----LPETLCELYNLQKLAV--RWC 490 (796)
Q Consensus 418 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l--~~~ 490 (796)
+...+...+.|++|+|+++.+... ....+...+...+.|++|+|++|.|.. +...+...++|++|+| ++|
T Consensus 57 l~~~L~~~~~L~~L~Ls~n~i~~~---g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N 133 (185)
T 1io0_A 57 CAEALKTNTYVKKFSIVGTRSNDP---VAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQ 133 (185)
T ss_dssp HHHHHTTCCSCCEEECTTSCCCHH---HHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS
T ss_pred HHHHHHhCCCcCEEECcCCCCChH---HHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 444567788999999995332211 112344556667889999999999883 5677888899999999 777
Q ss_pred ccccc----cchhhccccCCCeeecCCcc
Q 003773 491 TNLRE----LPAGIGKLMNMRSLMNGQTE 515 (796)
Q Consensus 491 ~~~~~----lp~~~~~l~~L~~L~l~~~~ 515 (796)
..-.. +...+...++|++|++++|.
T Consensus 134 ~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 134 PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 64322 34456667899999999884
No 232
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.98 E-value=0.011 Score=58.61 Aligned_cols=126 Identities=17% Similarity=0.141 Sum_probs=66.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHh-CCceE
Q 003773 40 ISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESI-RGKKF 118 (796)
Q Consensus 40 v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~ 118 (796)
+.|+|++|+||||||+.++..... ..+++....-.+. ...+....+..+.+.. ...+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~----------------~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNM----------------YVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS----------------TTHHHHHHHHHHHHHHHHTCSE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh----------------hhhHHHHHHHHHHHHHHhcCCC
Confidence 899999999999999999875221 2445543321110 0000111112222221 34578
Q ss_pred EEEEeCCCCCCc-------cC----hhhHhhhccCCC--CCcEEEEEecchhhhhcc-----CccceEEccCCChHhHHH
Q 003773 119 FLVLDDVWDGDF-------KK----WDPFFSCLKNGH--HESKILITTRDRSVALQM-----GSIDIISVKELGEEECWS 180 (796)
Q Consensus 119 LlvlDd~~~~~~-------~~----~~~l~~~~~~~~--~gs~iiiTsr~~~~~~~~-----~~~~~~~l~~l~~~e~~~ 180 (796)
++++|+++.... .. ...+...+..+. ...-++.+|...++.+.. .....+.+...+.++-.+
T Consensus 106 i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp EEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred eEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 999999954210 00 111222222221 223345566655443221 335678888888888888
Q ss_pred HHHHHh
Q 003773 181 LFKQVA 186 (796)
Q Consensus 181 lf~~~~ 186 (796)
+|+...
T Consensus 186 il~~~~ 191 (274)
T 2x8a_A 186 ILKTIT 191 (274)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 998765
No 233
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.95 E-value=0.0008 Score=77.96 Aligned_cols=114 Identities=13% Similarity=0.169 Sum_probs=61.5
Q ss_pred CcccccHHHHHHHhcccC--------CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHH
Q 003773 15 LQIEGLDDDNTLALASSE--------QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAK 86 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~~~--------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 86 (796)
..++|.++.++.+..... .......+.++|++|+|||++|+.+++.. . ...+.++++.-.....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l--~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH--T---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh--c---CCEEEEechhhcchhh---
Confidence 458899988874433211 11233578999999999999999998763 1 2345555554222100
Q ss_pred HHHHHhccCCCCCccHH---HHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhcc
Q 003773 87 AILEVLDKSASSLGEFQ---SLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLK 141 (796)
Q Consensus 87 ~i~~~l~~~~~~~~~~~---~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~ 141 (796)
+.+.++. .+.....+ .+...+. .....+++||+++....+....+...+.
T Consensus 530 -~~~l~g~-~~g~~g~~~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le 582 (758)
T 1r6b_X 530 -VSRLIGA-PPGYVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNILLQVMD 582 (758)
T ss_dssp -CSSSCCC-CSCSHHHHHTTHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred -HhhhcCC-CCCCcCccccchHHHHHH---hCCCcEEEEeCccccCHHHHHHHHHHhc
Confidence 0001111 11111111 1122222 2346799999997766555555555544
No 234
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.91 E-value=0.0063 Score=66.85 Aligned_cols=159 Identities=17% Similarity=0.184 Sum_probs=73.8
Q ss_pred cccccHHHHHHHhc-----ccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHH
Q 003773 16 QIEGLDDDNTLALA-----SSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILE 90 (796)
Q Consensus 16 ~~vGr~~~~~~l~~-----~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 90 (796)
+++|-+.-.+.+.+ ..........+.++|++|+||||+|+.++... ...| ..+.++...+...+......
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l--~~~~---~~i~~~~~~~~~~~~g~~~~ 156 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL--GRKF---VRISLGGVRDESEIRGHRRT 156 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH--TCEE---EEECCCC-------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc--CCCe---EEEEecccchhhhhhhHHHH
Confidence 47887776663321 11212245689999999999999999998762 2222 22233321121111111111
Q ss_pred HhccCCCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCCcc----ChhhHhhhccCCC---------------CCcEEEE
Q 003773 91 VLDKSASSLGEFQSLMQQTQESIRGKKFFLVLDDVWDGDFK----KWDPFFSCLKNGH---------------HESKILI 151 (796)
Q Consensus 91 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~----~~~~l~~~~~~~~---------------~gs~iii 151 (796)
..+.. .+.....+. ......-++++|+++....+ ....+...+.... ....||.
T Consensus 157 ~ig~~------~~~~~~~~~-~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ 229 (543)
T 3m6a_A 157 YVGAM------PGRIIQGMK-KAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIA 229 (543)
T ss_dssp -------------CHHHHHH-TTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEE
T ss_pred HhccC------chHHHHHHH-HhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEe
Confidence 11110 011111122 22223348889999663322 1233333332110 2345666
Q ss_pred Eecchhhhh-c-cCccceEEccCCChHhHHHHHHHHh
Q 003773 152 TTRDRSVAL-Q-MGSIDIISVKELGEEECWSLFKQVA 186 (796)
Q Consensus 152 Tsr~~~~~~-~-~~~~~~~~l~~l~~~e~~~lf~~~~ 186 (796)
||....... . ......+++.+++.++-.+++..+.
T Consensus 230 ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 230 TANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp ECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred ccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 665432111 0 0112478899999988888877654
No 235
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.87 E-value=0.0004 Score=70.35 Aligned_cols=38 Identities=21% Similarity=0.215 Sum_probs=27.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEe
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCV 75 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 75 (796)
.+.+.|+|++|+|||+||.++++.......+ .++++.+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~-~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGV-STTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCC-CEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCC-cEEEEEH
Confidence 4678899999999999999999863312222 3555544
No 236
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.86 E-value=0.0053 Score=58.76 Aligned_cols=85 Identities=19% Similarity=0.185 Sum_probs=52.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhc-----------cC-CCCCccHHH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLD-----------KS-ASSLGEFQS 104 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-----------~~-~~~~~~~~~ 104 (796)
-.++.|.|++|+||||+|..++. ..-..++|++.....+...+.+ +.+..+ .. .....+...
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 35899999999999999998876 1224688888776555555443 222221 11 111222233
Q ss_pred HHHHHHHHhCCceEEEEEeCCCC
Q 003773 105 LMQQTQESIRGKKFFLVLDDVWD 127 (796)
Q Consensus 105 ~~~~~~~~l~~~~~LlvlDd~~~ 127 (796)
....+......+.-++|+|....
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcHH
Confidence 44555555544577999998843
No 237
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.84 E-value=0.0082 Score=63.04 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=19.5
Q ss_pred cccCCCCccceeeccCCCCCCCCCc-CCCCCCCccEEEEc
Q 003773 733 ENISIMPRLSSLEIDCCSKLNVLPD-HLLQTTTLQELSIR 771 (796)
Q Consensus 733 ~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~ 771 (796)
..|.++++|+.+.|..+ ++.++. .+.++++|+.+.+.
T Consensus 304 ~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 304 RVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred hhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence 34555666666666432 444432 34455666666554
No 238
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.81 E-value=0.0036 Score=64.34 Aligned_cols=155 Identities=14% Similarity=0.142 Sum_probs=84.4
Q ss_pred ccccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHH
Q 003773 11 ARLKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILE 90 (796)
Q Consensus 11 ~~~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 90 (796)
+.....++|+++.++.+...+..+ .-+.++|++|+|||++|+.+++. .... ...+.+.......++. .
T Consensus 23 ~~~~~~i~g~~~~~~~l~~~l~~~---~~vll~G~pGtGKT~la~~la~~--~~~~---~~~i~~~~~~~~~~l~----g 90 (331)
T 2r44_A 23 DEVGKVVVGQKYMINRLLIGICTG---GHILLEGVPGLAKTLSVNTLAKT--MDLD---FHRIQFTPDLLPSDLI----G 90 (331)
T ss_dssp HHHTTTCCSCHHHHHHHHHHHHHT---CCEEEESCCCHHHHHHHHHHHHH--TTCC---EEEEECCTTCCHHHHH----E
T ss_pred HHhccceeCcHHHHHHHHHHHHcC---CeEEEECCCCCcHHHHHHHHHHH--hCCC---eEEEecCCCCChhhcC----C
Confidence 345578999999998666554322 35789999999999999999875 2222 2334444333333221 1
Q ss_pred HhccCCCCCccHHHHHHHHHHHhC-C--ceEEEEEeCCCCCCccChhhHhhhccC-----------CCCCcEEEEEecch
Q 003773 91 VLDKSASSLGEFQSLMQQTQESIR-G--KKFFLVLDDVWDGDFKKWDPFFSCLKN-----------GHHESKILITTRDR 156 (796)
Q Consensus 91 ~l~~~~~~~~~~~~~~~~~~~~l~-~--~~~LlvlDd~~~~~~~~~~~l~~~~~~-----------~~~gs~iiiTsr~~ 156 (796)
...... ..... .+. + ...++++|+++.........+...+.. ......|+.|+...
T Consensus 91 ~~~~~~-~~~~~---------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~ 160 (331)
T 2r44_A 91 TMIYNQ-HKGNF---------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV 160 (331)
T ss_dssp EEEEET-TTTEE---------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred ceeecC-CCCce---------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence 100000 00000 000 0 125899999976554444444433321 12334455555532
Q ss_pred h------hhhc-cCccc-eEEccCCChHhHHHHHHHHhh
Q 003773 157 S------VALQ-MGSID-IISVKELGEEECWSLFKQVAF 187 (796)
Q Consensus 157 ~------~~~~-~~~~~-~~~l~~l~~~e~~~lf~~~~~ 187 (796)
+ +... ..... .+.+...+.++-.+++.+.+.
T Consensus 161 ~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 161 EQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp CCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred cccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 2 1111 11123 588999999999999988763
No 239
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.77 E-value=0.00097 Score=78.03 Aligned_cols=131 Identities=15% Similarity=0.205 Sum_probs=67.3
Q ss_pred CcccccHHHHHHHhccc-------CC-CCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHH
Q 003773 15 LQIEGLDDDNTLALASS-------EQ-QKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAK 86 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~~-------~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 86 (796)
..++|.+..++.+.... .. +.....+.|+|++|+|||++|+.+++... ..-...+.++++....... .
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~--~~~~~~i~i~~~~~~~~~~-~- 633 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTEYMEKHA-V- 633 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH--SSGGGEEEECTTTCCSSGG-G-
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc--CCCCcEEEEechhccchhH-H-
Confidence 35799999888443321 11 12235889999999999999999987621 1112244555544222100 0
Q ss_pred HHHHHhccCCCCC---ccHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCC-----------CCcEEEEE
Q 003773 87 AILEVLDKSASSL---GEFQSLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGH-----------HESKILIT 152 (796)
Q Consensus 87 ~i~~~l~~~~~~~---~~~~~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~-----------~gs~iiiT 152 (796)
..+.+..+.. .........+.+ ...-+|+||+++....+....+...+..+. .+..||+|
T Consensus 634 ---s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~t 707 (854)
T 1qvr_A 634 ---SRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILT 707 (854)
T ss_dssp ---GGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEE
T ss_pred ---HHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEe
Confidence 0110000000 000112222222 234689999997766555556666555331 23447777
Q ss_pred ecc
Q 003773 153 TRD 155 (796)
Q Consensus 153 sr~ 155 (796)
|..
T Consensus 708 sn~ 710 (854)
T 1qvr_A 708 SNL 710 (854)
T ss_dssp CCT
T ss_pred cCc
Confidence 764
No 240
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.73 E-value=0.00058 Score=67.94 Aligned_cols=68 Identities=15% Similarity=0.271 Sum_probs=43.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEe--CCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCV--SDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRG 115 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 115 (796)
+++.|+|++|+|||+||.+++.. . . ..++|++. .+..+ .. ..+.++..+.+.+.+..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~--~--G-~~VlyIs~~~eE~v~-------------~~---~~~le~~l~~i~~~l~~ 182 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA--L--G-GKDKYATVRFGEPLS-------------GY---NTDFNVFVDDIARAMLQ 182 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH--H--H-TTSCCEEEEBSCSST-------------TC---BCCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh--C--C-CCEEEEEecchhhhh-------------hh---hcCHHHHHHHHHHHHhh
Confidence 57789999999999999988764 1 1 12456666 22211 00 03455555556666655
Q ss_pred ceEEEEEeCCCC
Q 003773 116 KKFFLVLDDVWD 127 (796)
Q Consensus 116 ~~~LlvlDd~~~ 127 (796)
.+ ++|+|++..
T Consensus 183 ~~-LLVIDsI~a 193 (331)
T 2vhj_A 183 HR-VIVIDSLKN 193 (331)
T ss_dssp CS-EEEEECCTT
T ss_pred CC-EEEEecccc
Confidence 55 999999943
No 241
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.72 E-value=0.0089 Score=67.86 Aligned_cols=173 Identities=14% Similarity=0.088 Sum_probs=91.6
Q ss_pred CcccccHHHHHHHhcc----c--------CCCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHH
Q 003773 15 LQIEGLDDDNTLALAS----S--------EQQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEI 82 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~----~--------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 82 (796)
.++.|-++.++.+.+. + .+....+-|.++|++|+|||+||+++++. ...+ .+.|+.+.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~---~~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCE---EEEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCe---EEEEEhHH-----
Confidence 3577887777633221 0 01234577999999999999999999987 3222 34444321
Q ss_pred HHHHHHHHHhccCCCCCccHHH-HHHHHHHHhCCceEEEEEeCCCCCC------ccCh-----hhHhhhccC--CCCCcE
Q 003773 83 RIAKAILEVLDKSASSLGEFQS-LMQQTQESIRGKKFFLVLDDVWDGD------FKKW-----DPFFSCLKN--GHHESK 148 (796)
Q Consensus 83 ~~~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~~~LlvlDd~~~~~------~~~~-----~~l~~~~~~--~~~gs~ 148 (796)
+. +. ...+.+. +...+.......+.+|++|+++... .... ..+...+.. ...+.-
T Consensus 274 -l~-------sk---~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 274 -IM-------SK---LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp -HH-------SS---CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred -hh-------cc---cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 10 00 1111122 2222333345678999999995421 0111 112222211 122334
Q ss_pred EEEEecchhhhh-cc----CccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCc
Q 003773 149 ILITTRDRSVAL-QM----GSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLP 213 (796)
Q Consensus 149 iiiTsr~~~~~~-~~----~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 213 (796)
||.||...+... .+ .....+++...+.++-.++|+.+.... ......+ ...+++.+.|..
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~-~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM-KLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSS-EECTTCC----HHHHHHHCCSCC
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCC-CCCcccC----HHHHHHhcCCCC
Confidence 555665433211 11 234578899888888888888765221 1111122 456788888865
No 242
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.63 E-value=0.019 Score=56.21 Aligned_cols=175 Identities=12% Similarity=0.080 Sum_probs=85.9
Q ss_pred ccCcccccHHHHHHHh---cccCC--------CCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCH
Q 003773 13 LKLQIEGLDDDNTLAL---ASSEQ--------QKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEE 81 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~---~~~~~--------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 81 (796)
.-++++|.++..+.+. ..... -.-.+-+.|+|++|+||||||+.++... . ...+.+...
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~--~---~~~i~~~~~----- 83 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--R---VPFITASGS----- 83 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT--T---CCEEEEEHH-----
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh--C---CCEEEeeHH-----
Confidence 3456899887766222 11100 0111238999999999999999998762 2 223333321
Q ss_pred HHHHHHHHHHhccCCCCCccHHHHHHHHHHHh-CCceEEEEEeCCCCCC----------ccC----hhhHhhhccCCCC-
Q 003773 82 IRIAKAILEVLDKSASSLGEFQSLMQQTQESI-RGKKFFLVLDDVWDGD----------FKK----WDPFFSCLKNGHH- 145 (796)
Q Consensus 82 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~LlvlDd~~~~~----------~~~----~~~l~~~~~~~~~- 145 (796)
.+ .... .......+..+.+.. .....++++|+++... ... ...+...+.....
T Consensus 84 -~~----~~~~------~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~ 152 (254)
T 1ixz_A 84 -DF----VEMF------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 152 (254)
T ss_dssp -HH----HHSC------TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT
T ss_pred -HH----HHHH------hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC
Confidence 11 1100 001111122222222 3456899999983210 011 1122222222221
Q ss_pred -CcEEEEEecchhhhhc-----cCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCc
Q 003773 146 -ESKILITTRDRSVALQ-----MGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLP 213 (796)
Q Consensus 146 -gs~iiiTsr~~~~~~~-----~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 213 (796)
..-++.||...+.... ......+.+...+.++-.++++..+-. ........ ...+++.+.|.-
T Consensus 153 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~-~~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 153 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG-KPLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTT-SCBCTTCC----HHHHHHTCTTCC
T ss_pred CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcC-CCCCcccC----HHHHHHHcCCCC
Confidence 2234445555443221 123457888888888888888776521 11111111 345777777754
No 243
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.63 E-value=0.02 Score=59.00 Aligned_cols=157 Identities=9% Similarity=-0.057 Sum_probs=97.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHH-HhC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQE-SIR 114 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~l~ 114 (796)
-.++..++|+.|.||++.++.+.+... ...|+....+......+.+++ .+.+.. -+-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l---------------------~~~~~~~plf 74 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWNAI---------------------FSLCQAMSLF 74 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHHHH---------------------HHHHHHHHHC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHHHH---------------------HHHhcCcCCc
Confidence 446899999999999999988877522 123432211222222233222 222211 234
Q ss_pred CceEEEEEeCCCC-CCccChhhHhhhccCCCCCcEEEEEecc-------hhhhhcc-CccceEEccCCChHhHHHHHHHH
Q 003773 115 GKKFFLVLDDVWD-GDFKKWDPFFSCLKNGHHESKILITTRD-------RSVALQM-GSIDIISVKELGEEECWSLFKQV 185 (796)
Q Consensus 115 ~~~~LlvlDd~~~-~~~~~~~~l~~~~~~~~~gs~iiiTsr~-------~~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~ 185 (796)
+++-++|+|+++. .....++.+...+....+++.+|+++.. ..+...+ .....++..+++.++..+.+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 6677889999866 4445667777777666667777776643 1222222 23468899999999988888777
Q ss_pred hhCCCCCCCCcchhHHHHHHHHhcCCCchhHHH
Q 003773 186 AFLGRSFEDCEKLEPIGRKIACKCKGLPLAAKV 218 (796)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 218 (796)
+...+. .-..+.+..+++.++|...++..
T Consensus 155 ~~~~g~----~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 155 AKQLNL----ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHTTC----EECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHcCC----CCCHHHHHHHHHHhchHHHHHHH
Confidence 643221 12245678899999998876654
No 244
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.62 E-value=0.0055 Score=64.23 Aligned_cols=24 Identities=38% Similarity=0.361 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...+.++|++|+|||++|+.+++.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999999876
No 245
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.59 E-value=0.0012 Score=62.70 Aligned_cols=113 Identities=12% Similarity=-0.056 Sum_probs=62.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCC--CccHHHHHHHHHHHhC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASS--LGEFQSLMQQTQESIR 114 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~l~ 114 (796)
-.++.|+|..|+||||++..++.+. ..+-..++.+....+. + ...+++..++..... .....++.+.+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~--~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRL--EYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH--HHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 3689999999999999998777663 2222234444433321 1 222344444432211 1233455555555554
Q ss_pred CceE-EEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecchh
Q 003773 115 GKKF-FLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDRS 157 (796)
Q Consensus 115 ~~~~-LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~ 157 (796)
+.++ +|++|.+..-+.+..+.+.. +.+ .|..||+|-+..+
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDKN 127 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSBC
T ss_pred CCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEecccc
Confidence 4444 99999996543333333322 222 2677999988543
No 246
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.50 E-value=0.037 Score=55.06 Aligned_cols=175 Identities=11% Similarity=0.074 Sum_probs=86.3
Q ss_pred ccCcccccHHHHHHHhc---ccCC--------CCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCH
Q 003773 13 LKLQIEGLDDDNTLALA---SSEQ--------QKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEE 81 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~---~~~~--------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 81 (796)
..++++|.++.++.+.. .... -.-.+-+.|+|++|+||||||+.++... . ...+.+...
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~--~---~~~i~~~~~----- 107 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--R---VPFITASGS----- 107 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT--T---CCEEEEEHH-----
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc--C---CCEEEecHH-----
Confidence 34568999887663221 1100 0111238999999999999999998763 2 223444321
Q ss_pred HHHHHHHHHHhccCCCCCccHHHHHHH-HHHHhCCceEEEEEeCCCCCC----------ccCh----hhHhhhccCCCC-
Q 003773 82 IRIAKAILEVLDKSASSLGEFQSLMQQ-TQESIRGKKFFLVLDDVWDGD----------FKKW----DPFFSCLKNGHH- 145 (796)
Q Consensus 82 ~~~~~~i~~~l~~~~~~~~~~~~~~~~-~~~~l~~~~~LlvlDd~~~~~----------~~~~----~~l~~~~~~~~~- 145 (796)
.+ .... .......+.. ++..-...+.++++|+++... ...+ ..+...+.....
T Consensus 108 -~~----~~~~------~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~ 176 (278)
T 1iy2_A 108 -DF----VEMF------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 176 (278)
T ss_dssp -HH----HHST------TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT
T ss_pred -HH----HHHH------hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC
Confidence 11 1100 0001111112 222223456899999984210 0111 122222222221
Q ss_pred -CcEEEEEecchhhhh-----ccCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCc
Q 003773 146 -ESKILITTRDRSVAL-----QMGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLP 213 (796)
Q Consensus 146 -gs~iiiTsr~~~~~~-----~~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 213 (796)
..-++.||...++.. .......+.+...+.++-.++++..+-. ........ ...+++.+.|..
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~-~~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG-KPLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT-SCBCTTCC----HHHHHHTCTTCC
T ss_pred CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc-CCCCcccC----HHHHHHHcCCCC
Confidence 123444555443322 1123458889988988888888876522 11111111 345777777765
No 247
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.44 E-value=0.023 Score=61.05 Aligned_cols=173 Identities=11% Similarity=0.039 Sum_probs=89.3
Q ss_pred cccCcccccHHHHHHHhc---ccCC--------CCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCC
Q 003773 12 RLKLQIEGLDDDNTLALA---SSEQ--------QKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFE 80 (796)
Q Consensus 12 ~~~~~~vGr~~~~~~l~~---~~~~--------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 80 (796)
....+++|.++.++.+.+ .... ..-.+-|.|+|++|+|||+||++++... . ...+.++.+.-..
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~--~---~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--R---VPFITASGSDFVE 102 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT--T---CCEEEEEGGGGTS
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--C---CCEEEEehhHHHH
Confidence 345679999988773322 1110 0112348999999999999999998762 2 2244454432111
Q ss_pred HHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhC----CceEEEEEeCCCCCCc----------cCh----hhHhhhccC
Q 003773 81 EIRIAKAILEVLDKSASSLGEFQSLMQQTQESIR----GKKFFLVLDDVWDGDF----------KKW----DPFFSCLKN 142 (796)
Q Consensus 81 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~----~~~~LlvlDd~~~~~~----------~~~----~~l~~~~~~ 142 (796)
. .. ......+...+. ..+.++++|+++.... +.+ ..+...+..
T Consensus 103 ~----------------~~---g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 103 M----------------FV---GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp S----------------CT---THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred h----------------hh---hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 0 00 011112222222 2357999999954211 111 122222222
Q ss_pred CC--CCcEEEEEecchhhhhc-----cCccceEEccCCChHhHHHHHHHHhhCCCCCCCCcchhHHHHHHHHhcCCCc
Q 003773 143 GH--HESKILITTRDRSVALQ-----MGSIDIISVKELGEEECWSLFKQVAFLGRSFEDCEKLEPIGRKIACKCKGLP 213 (796)
Q Consensus 143 ~~--~gs~iiiTsr~~~~~~~-----~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 213 (796)
.. .+..++.||...+.... ......+.+...+.++-.++++.++-. ........ ...+++.+.|+.
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~-~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG-KPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSS-SCCCCSST----THHHHTTSCSCC
T ss_pred cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhc-CCCChHHH----HHHHHHhcCCCC
Confidence 21 23334445555443221 123458889888888888888766521 11111111 345777787766
No 248
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.31 E-value=0.0072 Score=69.77 Aligned_cols=152 Identities=13% Similarity=0.086 Sum_probs=80.1
Q ss_pred cCcccccHHHHHHHhcccC------------CCCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCH
Q 003773 14 KLQIEGLDDDNTLALASSE------------QQKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEE 81 (796)
Q Consensus 14 ~~~~vGr~~~~~~l~~~~~------------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 81 (796)
-.+++|.++.++.+.+... .-...+.|.|+|++|+||||||+.++.. .... .+.+....-.
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~---~i~v~~~~l~-- 275 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGPEIM-- 275 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCE---EEEEEHHHHS--
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCc---EEEEEchHhh--
Confidence 3568999998885443321 1233457899999999999999999876 2222 2334322100
Q ss_pred HHHHHHHHHHhccCCCCCccHHH-HHHHHHHHhCCceEEEEEeCCCCCCc------c-----ChhhHhhhccC--CCCCc
Q 003773 82 IRIAKAILEVLDKSASSLGEFQS-LMQQTQESIRGKKFFLVLDDVWDGDF------K-----KWDPFFSCLKN--GHHES 147 (796)
Q Consensus 82 ~~~~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~~~LlvlDd~~~~~~------~-----~~~~l~~~~~~--~~~gs 147 (796)
.. ...+... ....+.......+.++++|+++.... . ....+...+.. ...+.
T Consensus 276 ------------~~--~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v 341 (806)
T 1ypw_A 276 ------------SK--LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp ------------SS--STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCC
T ss_pred ------------hh--hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccE
Confidence 00 0111111 11222222334578999999943210 0 01122222221 12334
Q ss_pred EEEEEecchhhhh-cc----CccceEEccCCChHhHHHHHHHHh
Q 003773 148 KILITTRDRSVAL-QM----GSIDIISVKELGEEECWSLFKQVA 186 (796)
Q Consensus 148 ~iiiTsr~~~~~~-~~----~~~~~~~l~~l~~~e~~~lf~~~~ 186 (796)
.+|.||...+... .+ .....+.+...+.++-.+++...+
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 5555665532211 11 123467788888888888887665
No 249
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.27 E-value=0.0031 Score=57.87 Aligned_cols=117 Identities=19% Similarity=0.122 Sum_probs=63.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCc---CCHHHHHHHHHHH---hcc--CCCC------CccHH
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDA---FEEIRIAKAILEV---LDK--SASS------LGEFQ 103 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~---l~~--~~~~------~~~~~ 103 (796)
..|.|++-.|.||||+|-..+-+ ...+=-.|.++.+.+. .....+++.+.-. .+. .... .....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalR--A~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAAR--AVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHH--HHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 45667777779999999777665 2222223555544432 2233333332100 000 0000 11223
Q ss_pred HHHHHHHHHhCCceE-EEEEeCCCC---CCccChhhHhhhccCCCCCcEEEEEecch
Q 003773 104 SLMQQTQESIRGKKF-FLVLDDVWD---GDFKKWDPFFSCLKNGHHESKILITTRDR 156 (796)
Q Consensus 104 ~~~~~~~~~l~~~~~-LlvlDd~~~---~~~~~~~~l~~~~~~~~~gs~iiiTsr~~ 156 (796)
.....+++.+.+.+| |||||++-. -..-..+.+...+........||+|+|..
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 344556666665555 999999821 12234456666666655667799999983
No 250
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.17 E-value=0.016 Score=57.46 Aligned_cols=84 Identities=12% Similarity=0.162 Sum_probs=53.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCC-----CccHHHH-HHHHHHH
Q 003773 39 IISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASS-----LGEFQSL-MQQTQES 112 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~-~~~~~~~ 112 (796)
++-|+|++|+||||||.+++.....+..=..++||+....++.. .++.++..... ..+.++. ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999997776652211112468999988777654 25666643221 2234444 3333222
Q ss_pred --h-CCceEEEEEeCCCC
Q 003773 113 --I-RGKKFFLVLDDVWD 127 (796)
Q Consensus 113 --l-~~~~~LlvlDd~~~ 127 (796)
+ .++.-++|+|-+..
T Consensus 105 ~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HTCCTTCCEEEEEECSTT
T ss_pred HHhhccCceEEEEecccc
Confidence 2 45678999999843
No 251
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.08 E-value=0.022 Score=58.50 Aligned_cols=56 Identities=20% Similarity=0.261 Sum_probs=38.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccc----cCCeEEEEEeCCcCCHHHHHHHHHHHh
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKR----KFDIVIWVCVSDAFEEIRIAKAILEVL 92 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l 92 (796)
.-.++.|+|.+|+||||+|..++....... .-..++|++....++...+.+ +++.+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~ 180 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRF 180 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHc
Confidence 447999999999999999988776421111 224689998887766665543 33444
No 252
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.08 E-value=0.014 Score=56.67 Aligned_cols=89 Identities=17% Similarity=0.161 Sum_probs=50.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccc----cCCeEEEEEeCCcCCHHHHHHHHHHHhccCC------------CCCc
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKR----KFDIVIWVCVSDAFEEIRIAKAILEVLDKSA------------SSLG 100 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~~~ 100 (796)
-.++.|.|++|+||||+++.++....... .-..++|++....+....+. .+++.++... ....
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 35999999999999999988876311111 13578998877654444432 2333333211 0111
Q ss_pred cHHHHHHHHHHHhC-CceEEEEEeCCC
Q 003773 101 EFQSLMQQTQESIR-GKKFFLVLDDVW 126 (796)
Q Consensus 101 ~~~~~~~~~~~~l~-~~~~LlvlDd~~ 126 (796)
+..+....+.+.+. .+.-++|+|.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 11122233444443 466788889873
No 253
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.07 E-value=0.011 Score=60.48 Aligned_cols=84 Identities=24% Similarity=0.304 Sum_probs=52.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCC-----CCCccHHHHHHHHH
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSA-----SSLGEFQSLMQQTQ 110 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~~~ 110 (796)
.-+++.|.|++|+||||||.+++... ...=..++|++.....+.. .++.++... ....+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~--~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA--QKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 34799999999999999998888652 2222347888877666544 344444321 11234455555555
Q ss_pred HHhC-CceEEEEEeCCC
Q 003773 111 ESIR-GKKFFLVLDDVW 126 (796)
Q Consensus 111 ~~l~-~~~~LlvlDd~~ 126 (796)
...+ .+.-++|+|.+.
T Consensus 133 ~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHTSCCSEEEEECTT
T ss_pred HHhhhcCCCeEEehHhh
Confidence 4443 445588899984
No 254
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.96 E-value=0.014 Score=59.48 Aligned_cols=88 Identities=19% Similarity=0.221 Sum_probs=52.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccc----cCCeEEEEEeCCcCCHHHHHHHHHHHhccCCC---------CCccHH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKR----KFDIVIWVCVSDAFEEIRIAKAILEVLDKSAS---------SLGEFQ 103 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 103 (796)
-.++.|+|.+|+|||++|.+++....... .-..++|++....++..++.+ +++.++.... ...+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHH
Confidence 36899999999999999988775421111 024689998887766666543 3444432210 011111
Q ss_pred ---HHHHHHHHHhC--CceEEEEEeCC
Q 003773 104 ---SLMQQTQESIR--GKKFFLVLDDV 125 (796)
Q Consensus 104 ---~~~~~~~~~l~--~~~~LlvlDd~ 125 (796)
+....+...+. .+.-+||+|.+
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 23334444443 45668888887
No 255
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.96 E-value=0.017 Score=55.74 Aligned_cols=114 Identities=19% Similarity=0.068 Sum_probs=59.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCC--------------------
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSAS-------------------- 97 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------------------- 97 (796)
.+++|.|++|+||||+++.++..... .=..++|+.... ....+...+. .++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCce
Confidence 58999999999999999988854221 112466665443 3344433332 2221100
Q ss_pred ---CCccHHHHHHHHHHHh---CCceEEEEEeCCCCC---CccChhhHhhhccC--CCCCcEEEEEecch
Q 003773 98 ---SLGEFQSLMQQTQESI---RGKKFFLVLDDVWDG---DFKKWDPFFSCLKN--GHHESKILITTRDR 156 (796)
Q Consensus 98 ---~~~~~~~~~~~~~~~l---~~~~~LlvlDd~~~~---~~~~~~~l~~~~~~--~~~gs~iiiTsr~~ 156 (796)
...+.++....+.+.+ +.+..++|+|..... +......+...+.. ...|..||++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 0113344444444333 233459999998531 22222333333322 12466788888764
No 256
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.91 E-value=0.018 Score=59.37 Aligned_cols=84 Identities=19% Similarity=0.224 Sum_probs=53.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCC-----CCccHHHHHHHHHH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSAS-----SLGEFQSLMQQTQE 111 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~ 111 (796)
-+++.|+|.+|+||||+|.+++... ...-..++|++....++.. .++.++.... ...+.++....+.+
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 3588999999999999998877652 2222368999888766543 2344443211 12344555555655
Q ss_pred HhC-CceEEEEEeCCCC
Q 003773 112 SIR-GKKFFLVLDDVWD 127 (796)
Q Consensus 112 ~l~-~~~~LlvlDd~~~ 127 (796)
..+ ...-+||+|.+..
T Consensus 147 l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHTTTCCSEEEEECTTT
T ss_pred HHhcCCCCEEEEeChHH
Confidence 554 3455899999843
No 257
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.88 E-value=0.044 Score=57.39 Aligned_cols=101 Identities=16% Similarity=0.140 Sum_probs=48.7
Q ss_pred CCCCCcEEEEeecCCCCC-CchhhhccCCcEEEEcCCCCCCCCCc--cccc-cccceeccccccceEeCccccCCCCCCc
Q 003773 621 PPLNVEELWILFYGGNIF-PKWLTLLTNLRELKLFSCVNCEHLPP--LGKL-LLEKLTLYNLISVKRVGDEFLGIEESSV 696 (796)
Q Consensus 621 ~~~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~lp~--l~~l-~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 696 (796)
.+..|+.+.+..+ ...+ ...+..+.+|+.+.+..+ +..++. +... +|+.+.+.+. .++.++...
T Consensus 238 ~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~a-------- 305 (379)
T 4h09_A 238 GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRV-------- 305 (379)
T ss_dssp TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCT-TCCEECTTT--------
T ss_pred CCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceecccccccccccccccccccc-ccceehhhh--------
Confidence 3445555555332 1112 223335666666666443 333332 3333 5555555432 133333221
Q ss_pred cCCCCCCcccCCCccceeeccccccccccccccccccccCCCCccceeeccC
Q 003773 697 DDTSSSSSVIAFPKLKSLKIEDLDELEEWNYRVTRKENISIMPRLSSLEIDC 748 (796)
Q Consensus 697 ~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 748 (796)
+..+.+|+.+.|.+ +++.+. ...|.++++|+.+.|..
T Consensus 306 --------F~~c~~L~~i~lp~--~l~~I~-----~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 306 --------FMDCVKLSSVTLPT--ALKTIQ-----VYAFKNCKALSTISYPK 342 (379)
T ss_dssp --------TTTCTTCCEEECCT--TCCEEC-----TTTTTTCTTCCCCCCCT
T ss_pred --------hcCCCCCCEEEcCc--cccEEH-----HHHhhCCCCCCEEEECC
Confidence 23566777776643 233322 34566777788777754
No 258
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.82 E-value=0.018 Score=58.76 Aligned_cols=89 Identities=15% Similarity=0.186 Sum_probs=52.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccc---------cC-----CeEEEEEeCCcCCHHHHHHHHHHHhccCC-----
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKR---------KF-----DIVIWVCVSDAFEEIRIAKAILEVLDKSA----- 96 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----- 96 (796)
.-.++.|+|.+|+|||++|.+++....... .. ..++|++....++..++.+. ++.++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCCCHHHHhc
Confidence 347999999999999999987775311110 11 46899988877666666543 44443221
Q ss_pred ----CCCccHH---HHHHHHHHHhC--CceEEEEEeCC
Q 003773 97 ----SSLGEFQ---SLMQQTQESIR--GKKFFLVLDDV 125 (796)
Q Consensus 97 ----~~~~~~~---~~~~~~~~~l~--~~~~LlvlDd~ 125 (796)
....+.+ +....+.+.+. .+.-+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0011111 23334444443 34568888887
No 259
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.49 E-value=0.023 Score=58.31 Aligned_cols=85 Identities=21% Similarity=0.245 Sum_probs=53.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCC-----CCccHHHHHHHHH
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSAS-----SLGEFQSLMQQTQ 110 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~ 110 (796)
.-+++.|+|++|+||||||.+++... ...=..++|++.....+.. .++.++.... ...+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~--~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA--QAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 34689999999999999998887652 2222458899887765543 2444443211 1123455555454
Q ss_pred HHhC-CceEEEEEeCCCC
Q 003773 111 ESIR-GKKFFLVLDDVWD 127 (796)
Q Consensus 111 ~~l~-~~~~LlvlDd~~~ 127 (796)
.... .+.-+||+|.+..
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 4443 3456899999843
No 260
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.48 E-value=0.11 Score=49.72 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|.|+.|+|||||++.++.-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998875
No 261
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.47 E-value=0.02 Score=58.77 Aligned_cols=84 Identities=19% Similarity=0.207 Sum_probs=50.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCC-----CCccHHHHHHHHH
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSAS-----SLGEFQSLMQQTQ 110 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~ 110 (796)
.-+++.|.|.+|+||||+|.+++... ...-..++|++....++... ++.++.... ...+.++....+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~--~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 34689999999999999998887652 22223588998877665432 344443211 1122344444443
Q ss_pred HHh-CCceEEEEEeCCC
Q 003773 111 ESI-RGKKFFLVLDDVW 126 (796)
Q Consensus 111 ~~l-~~~~~LlvlDd~~ 126 (796)
... ..+.-+||+|.+.
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 332 2345588999883
No 262
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.40 E-value=0.066 Score=51.52 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|+|+.|+|||||++.++.-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998875
No 263
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.35 E-value=0.018 Score=60.59 Aligned_cols=87 Identities=21% Similarity=0.220 Sum_probs=47.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcC-CHHHHHHHHHHHhc--------cCCCCCccHHH----
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAF-EEIRIAKAILEVLD--------KSASSLGEFQS---- 104 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~--------~~~~~~~~~~~---- 104 (796)
+.++|+|.+|+|||||+..+....... .-+.++++.+++.. +..++.+.+.+.-. ...........
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 368899999999999999888763222 12445666666543 23344443432200 00011111111
Q ss_pred HHHHHHHHh---CCceEEEEEeCC
Q 003773 105 LMQQTQESI---RGKKFFLVLDDV 125 (796)
Q Consensus 105 ~~~~~~~~l---~~~~~LlvlDd~ 125 (796)
..-.+.+++ .+++.|+++||+
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~i 254 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNI 254 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECT
T ss_pred HHHHHHHHHHHhcCCcEEEEeccH
Confidence 111233333 588999999999
No 264
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.33 E-value=0.003 Score=58.37 Aligned_cols=108 Identities=12% Similarity=-0.065 Sum_probs=50.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCC--CCCccHHHHHHHHHHHhCC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSA--SSLGEFQSLMQQTQESIRG 115 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~~~~~l~~ 115 (796)
+++.|+|+.|+||||++..++.+.... .. .++.+....+. +.....+....+... ....+.. .+.+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~-g~-~v~~~~~~~d~--r~~~~~i~s~~g~~~~~~~~~~~~----~~~~~~~~ 75 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG-KK-KVAVFKPKIDS--RYHSTMIVSHSGNGVEAHVIERPE----EMRKYIEE 75 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT-TC-EEEEEEEC-------CCCEECC----CEECEEESSGG----GGGGGCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC-CC-eEEEEeecccc--ccCcccEEecCCCceeeEEECCHH----HHHHHhcC
Confidence 478899999999999996665542211 12 23333322110 000000001111100 0011111 12233344
Q ss_pred ceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecch
Q 003773 116 KKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDR 156 (796)
Q Consensus 116 ~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~ 156 (796)
+.-+|++|.+..-+. +|......+... +..|++|.+..
T Consensus 76 ~~dvviIDE~Q~~~~-~~~~~l~~l~~~--~~~Vi~~Gl~~ 113 (184)
T 2orw_A 76 DTRGVFIDEVQFFNP-SLFEVVKDLLDR--GIDVFCAGLDL 113 (184)
T ss_dssp TEEEEEECCGGGSCT-THHHHHHHHHHT--TCEEEEEEESB
T ss_pred CCCEEEEECcccCCH-HHHHHHHHHHHC--CCCEEEEeecc
Confidence 567999999966433 344433333222 67788888753
No 265
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.30 E-value=0.037 Score=55.33 Aligned_cols=87 Identities=16% Similarity=0.176 Sum_probs=45.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCc-CCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDA-FEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIR 114 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 114 (796)
..++++|+|.+|+||||++..++........ ..+..++.... ....+.+....+..+.......+..+....+. .+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~-~~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKE-LF- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHH-HG-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHH-Hh-
Confidence 3569999999999999999888765322122 23555655432 12222233333333322111122233333333 23
Q ss_pred CceEEEEEeCC
Q 003773 115 GKKFFLVLDDV 125 (796)
Q Consensus 115 ~~~~LlvlDd~ 125 (796)
.+.=++++|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 34457888943
No 266
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.05 E-value=0.011 Score=54.38 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+|.|.|++|+||||+|+.+.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999875
No 267
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.89 E-value=0.028 Score=57.21 Aligned_cols=41 Identities=12% Similarity=-0.002 Sum_probs=28.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCcccc-ccCCeEEEEEeCCc
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVK-RKFDIVIWVCVSDA 78 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~ 78 (796)
-+.++|+|.+|+|||||++.+++....+ ..+. ++++.+++.
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER 215 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDER 215 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSC
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCC
Confidence 3589999999999999999887752111 1233 445667654
No 268
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.80 E-value=0.022 Score=53.79 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
....+|+|.|+.|+|||||++.+...
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45579999999999999999988775
No 269
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.80 E-value=0.013 Score=53.37 Aligned_cols=23 Identities=26% Similarity=0.115 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+|+|.|++|+||||+|+.++..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998865
No 270
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.76 E-value=0.012 Score=63.41 Aligned_cols=46 Identities=20% Similarity=0.129 Sum_probs=36.2
Q ss_pred ccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 003773 13 LKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNNE 61 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 61 (796)
....+||+++.++.+...+..+ .-|.|+|++|+|||++|+.+++..
T Consensus 20 l~~~ivGq~~~i~~l~~al~~~---~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 20 LEKGLYERSHAIRLCLLAALSG---ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp HHTTCSSCHHHHHHHHHHHHHT---CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred HHhhhHHHHHHHHHHHHHHhcC---CeeEeecCchHHHHHHHHHHHHHH
Confidence 4567999999999665544312 367899999999999999999863
No 271
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.75 E-value=0.019 Score=53.45 Aligned_cols=25 Identities=40% Similarity=0.442 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.-.+++|.|++|+||||+++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999875
No 272
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.73 E-value=0.021 Score=53.60 Aligned_cols=26 Identities=35% Similarity=0.413 Sum_probs=22.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
....+|+|.|..|+||||+++.+...
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999999988764
No 273
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.67 E-value=0.089 Score=53.97 Aligned_cols=91 Identities=24% Similarity=0.321 Sum_probs=50.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCcccccc---C-CeEEEEEeCCcCCHHHHHHHHHHHhccCC-----------C-CC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRK---F-DIVIWVCVSDAFEEIRIAKAILEVLDKSA-----------S-SL 99 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~---f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----------~-~~ 99 (796)
.-+++.|+|++|+|||||+..++........ . ..++|++....+....+ ..+++..+... . ..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 4479999999999999999888764211111 1 24689887665433333 23444332110 0 00
Q ss_pred ccHHHHHHHHHHHhC------CceEEEEEeCCCC
Q 003773 100 GEFQSLMQQTQESIR------GKKFFLVLDDVWD 127 (796)
Q Consensus 100 ~~~~~~~~~~~~~l~------~~~~LlvlDd~~~ 127 (796)
....+....+...+. .+.-++|+|.+..
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 112233334444443 4677999998843
No 274
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.67 E-value=0.019 Score=52.79 Aligned_cols=23 Identities=17% Similarity=0.512 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
++++|+|++|+|||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999998764
No 275
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.66 E-value=0.017 Score=52.88 Aligned_cols=20 Identities=35% Similarity=0.680 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCcHHHHHHHH
Q 003773 38 RIISLFGLGGIGKTTLAQLA 57 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~ 57 (796)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999998
No 276
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.60 E-value=0.018 Score=52.88 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 003773 38 RIISLFGLGGIGKTTLAQLAFN 59 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~ 59 (796)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999886
No 277
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.59 E-value=0.026 Score=56.23 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
....+|.|.|++|+||||+|+.+...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999998764
No 278
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.57 E-value=0.018 Score=54.01 Aligned_cols=24 Identities=38% Similarity=0.368 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.++|+|.|++|+||||+|+.++..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999875
No 279
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.56 E-value=0.02 Score=59.51 Aligned_cols=45 Identities=24% Similarity=0.257 Sum_probs=33.3
Q ss_pred cccccHHHHHHHhccc-------------C-CCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 16 QIEGLDDDNTLALASS-------------E-QQKGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 16 ~~vGr~~~~~~l~~~~-------------~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.++|.+..++.+.... . .....+.|.++|++|+|||++|+++++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4799999888544332 0 0113456889999999999999999876
No 280
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.52 E-value=0.086 Score=54.94 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=36.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccc----cccCCeEEEEEeCCcCCHHHHHHHHHHHhc
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGV----KRKFDIVIWVCVSDAFEEIRIAKAILEVLD 93 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 93 (796)
-.++.|.|++|+|||||+..++-.... ...-..++|++....+....+. .+++.++
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~g 237 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFG 237 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcC
Confidence 369999999999999999866422101 1123568898877655554443 3555544
No 281
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.49 E-value=0.024 Score=53.11 Aligned_cols=26 Identities=35% Similarity=0.252 Sum_probs=22.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNE 61 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 61 (796)
...+|+|.|++|+||||+++.++...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44799999999999999999998763
No 282
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.47 E-value=0.17 Score=51.15 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=36.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEV 91 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 91 (796)
-.++.|.|.+|+||||+|..++.....++ ..++|++.. .+..++...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 36899999999999999988876532222 568887765 4566666666554
No 283
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.43 E-value=0.017 Score=52.71 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+|+|.|+.|+||||+++.++..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998865
No 284
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.41 E-value=0.019 Score=53.09 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+.|.|.|+.|+||||+|+.+++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999875
No 285
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.29 E-value=0.018 Score=52.90 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
|.|+|.|++|+|||||++++..+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999988764
No 286
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.27 E-value=0.025 Score=53.42 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.-++|+|.|+.|+||||+++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3468999999999999999999876
No 287
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.27 E-value=0.025 Score=56.94 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=29.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCc
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDA 78 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 78 (796)
++.++|+|+|-||+||||.+..++.-. ...=..|.-|++...
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aL--A~~GkkVllID~Dpq 87 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAF--SILGKRVLQIGCDPK 87 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEESSS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHH--HHCCCeEEEEecCCC
Confidence 467999999999999999987665542 222224777777743
No 288
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.27 E-value=0.078 Score=49.65 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
+|.|.|++|+||+|.|+.++++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999998865
No 289
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.23 E-value=0.022 Score=51.59 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..++|+|.|+.|+||||+|+.++..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999875
No 290
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.21 E-value=0.019 Score=53.09 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
++++|.|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999998864
No 291
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.15 E-value=0.12 Score=52.29 Aligned_cols=51 Identities=14% Similarity=-0.014 Sum_probs=35.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEV 91 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 91 (796)
-.++.|.|.+|+||||+|..++..... .=..++|++.. .+..++...++..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE--ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE--MSAEQLALRALSD 96 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC--CCHHHHHHHHHHH
Confidence 358999999999999999888776322 22357776553 4566666666544
No 292
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.13 E-value=0.025 Score=52.66 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..|.|.|++|+||||+|+.+++.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999876
No 293
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.13 E-value=0.16 Score=50.71 Aligned_cols=87 Identities=16% Similarity=0.128 Sum_probs=46.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHH--HHHHHHHHhccCC---CCCccHHHH-HHHH
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIR--IAKAILEVLDKSA---SSLGEFQSL-MQQT 109 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~--~~~~i~~~l~~~~---~~~~~~~~~-~~~~ 109 (796)
..++++|+|++|+||||++..++..... .-..+.+++... +.... -+...++..+... ....+.... ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D~-~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAADT-FRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECT-TCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEcccc-ccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 4579999999999999999888875322 212355565443 22221 1223344433211 111122222 2334
Q ss_pred HHHhCCceEEEEEeCC
Q 003773 110 QESIRGKKFFLVLDDV 125 (796)
Q Consensus 110 ~~~l~~~~~LlvlDd~ 125 (796)
.+.+..+.-++++|-.
T Consensus 180 ~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 180 AHALARNKDVVIIDTA 195 (306)
T ss_dssp HHHHHTTCSEEEEEEC
T ss_pred HHHHhcCCCEEEEECC
Confidence 4444444557888865
No 294
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.11 E-value=0.035 Score=50.66 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
-.+|+|.|+.|+||||+++.++..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 468999999999999999998764
No 295
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.09 E-value=0.028 Score=52.29 Aligned_cols=24 Identities=33% Similarity=0.328 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..+|.|.|++|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998865
No 296
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.08 E-value=0.028 Score=52.64 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...+|+|.|+.|+||||+++.++..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999998865
No 297
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.04 E-value=0.019 Score=53.90 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..+|+|.|+.|+||||+|+.++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998865
No 298
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.02 E-value=0.03 Score=51.86 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 003773 38 RIISLFGLGGIGKTTLAQLAFN 59 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~ 59 (796)
.+++|.|+.|+||||+++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999874
No 299
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.01 E-value=0.22 Score=56.62 Aligned_cols=46 Identities=26% Similarity=0.278 Sum_probs=32.5
Q ss_pred CcccccHHHHHHHhcccC------------CCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 15 LQIEGLDDDNTLALASSE------------QQKGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 15 ~~~vGr~~~~~~l~~~~~------------~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.++.|.++..+.+.+... +-...+-|.++|++|+|||.+|+++++.
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 346788777775443311 1123456889999999999999999987
No 300
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.00 E-value=0.031 Score=52.56 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|.|+.|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 58999999999999999988764
No 301
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.00 E-value=0.026 Score=52.43 Aligned_cols=23 Identities=39% Similarity=0.745 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..|.|.|++|+||||+|+.+++.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 302
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.99 E-value=0.03 Score=51.17 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999988865
No 303
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.95 E-value=0.03 Score=50.95 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=19.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFN 59 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~ 59 (796)
-.+++|+|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 36899999999999999996543
No 304
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.93 E-value=0.024 Score=52.08 Aligned_cols=24 Identities=42% Similarity=0.468 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+.|.|.|++|+||||+|+.+++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 357889999999999999998865
No 305
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.92 E-value=0.03 Score=51.63 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...|+|+|+.|+||||+++.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999998764
No 306
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.90 E-value=0.034 Score=52.18 Aligned_cols=26 Identities=38% Similarity=0.318 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
....+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999998864
No 307
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.90 E-value=0.033 Score=52.71 Aligned_cols=25 Identities=36% Similarity=0.284 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...+|+|.|+.|+|||||++.+...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999988764
No 308
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.89 E-value=0.016 Score=59.96 Aligned_cols=47 Identities=23% Similarity=0.229 Sum_probs=32.4
Q ss_pred ccCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 13 LKLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.-.+++|.+..++.+..... .....-|.|+|++|+|||++|+.+++.
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~-~~~~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAV-DPGIGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHH-CGGGCCEEEECCGGGCTTHHHHHHHHH
T ss_pred CchhccChHHHHHHHHHHhh-CCCCceEEEECCCCccHHHHHHHHHHh
Confidence 34569999986664322211 111223889999999999999999875
No 309
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.88 E-value=0.026 Score=53.10 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.++|+|.|++|+||||+++.+...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998765
No 310
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.86 E-value=0.037 Score=52.20 Aligned_cols=25 Identities=36% Similarity=0.356 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...+|+|.|++|+||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999998875
No 311
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.86 E-value=0.031 Score=54.60 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
++|+|.|+.|+||||+|+.++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999865
No 312
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.81 E-value=0.033 Score=51.52 Aligned_cols=25 Identities=20% Similarity=0.582 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..++|+|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3468999999999999999988764
No 313
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.80 E-value=0.039 Score=51.83 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
....+|+|.|+.|+||||+|+.+++.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999998864
No 314
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.77 E-value=0.025 Score=51.65 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.|.|.|++|+||||+|+.++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999865
No 315
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.76 E-value=0.027 Score=52.65 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
+.++|+|+.|+|||||++.+...
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999988753
No 316
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.71 E-value=0.038 Score=52.04 Aligned_cols=22 Identities=45% Similarity=0.492 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 003773 38 RIISLFGLGGIGKTTLAQLAFN 59 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~ 59 (796)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 317
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.68 E-value=0.13 Score=51.69 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
....+|+|.|+.|+||||+|+.+...
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45569999999999999999888654
No 318
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.68 E-value=0.18 Score=53.03 Aligned_cols=53 Identities=28% Similarity=0.352 Sum_probs=36.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcC-CHHHHHHHHHHH
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAF-EEIRIAKAILEV 91 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 91 (796)
+.++|.|.+|+|||+|+.++++.. .+.+-+.++++-+++.. ...++.+.+.+.
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 588999999999999998887752 12334667778777653 334555555543
No 319
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.68 E-value=0.041 Score=54.75 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=23.3
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 34 QKGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 34 ~~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.....+|+|.|..|+||||+|+.+...
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345679999999999999999988775
No 320
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.64 E-value=0.039 Score=51.95 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+|+|.|+.|+||||+++.+...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999998875
No 321
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.61 E-value=0.095 Score=55.28 Aligned_cols=53 Identities=28% Similarity=0.285 Sum_probs=37.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcC-CHHHHHHHHHH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAF-EEIRIAKAILE 90 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~ 90 (796)
-+.++|.|.+|+|||+|+.++.+.. .+.+-+.++++-+++.. ...++.+.+.+
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred CCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhc
Confidence 3578999999999999998887752 12344678888887754 34455555554
No 322
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.60 E-value=0.12 Score=55.56 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCc
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNE 61 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~ 61 (796)
+.+.|.|.+|+|||+++.++....
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 389999999999999998888763
No 323
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.59 E-value=0.04 Score=49.47 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..++++|.|..|+||||++.++...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999988876
No 324
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.58 E-value=0.084 Score=45.22 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=32.8
Q ss_pred ccccc--cccccccCccccceEecCCCCccccchh-hhccCCccEeeccccccc
Q 003773 443 QNFIR--EIPENIGKLIHLKYLNLSELCIERLPET-LCELYNLQKLAVRWCTNL 493 (796)
Q Consensus 443 ~~~~~--~lp~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~ 493 (796)
++.+. .+|..+ -.+|++|+|++|.|+.+|.. +..+++|++|+|.+|+..
T Consensus 17 ~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 17 RRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp SSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 44455 666532 23578888888888877764 566777888888777643
No 325
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.56 E-value=0.036 Score=52.11 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.|+|.|+.|+||||+|+.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999875
No 326
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.55 E-value=0.036 Score=51.64 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..+|+|.|+.|+||||+|+.+++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998865
No 327
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.55 E-value=0.04 Score=51.31 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+|+|.|++|+||||+|+.+++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988764
No 328
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.54 E-value=0.034 Score=52.27 Aligned_cols=21 Identities=43% Similarity=0.434 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 003773 39 IISLFGLGGIGKTTLAQLAFN 59 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~ 59 (796)
+|+|.|+.|+||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999876
No 329
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.50 E-value=0.027 Score=51.94 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+|+|.|++|+||||+|+.++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998875
No 330
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.50 E-value=0.046 Score=48.74 Aligned_cols=25 Identities=32% Similarity=0.305 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.-.+++|.|+.|+|||||++.++.-
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3369999999999999999988874
No 331
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.48 E-value=0.049 Score=50.25 Aligned_cols=25 Identities=36% Similarity=0.323 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...+|.|.|++|+||||+++.++..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999876
No 332
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.46 E-value=0.037 Score=53.04 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+|+|+|+.|+||||+|+.++..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998764
No 333
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.45 E-value=0.031 Score=50.89 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
++|.|.|+.|+||||+|+.+.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998875
No 334
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.45 E-value=0.046 Score=51.55 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=23.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...++|.|.|++|+||+|.|+.++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999998865
No 335
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.43 E-value=0.042 Score=50.70 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..|+|.|+.|+||||+|+.+++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998864
No 336
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.41 E-value=0.04 Score=51.04 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...+|+|+|+.|+||||+|+.+.+.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999998764
No 337
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.37 E-value=0.046 Score=51.21 Aligned_cols=24 Identities=29% Similarity=0.225 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...|+|.|++|+||||+|+.++..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998865
No 338
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.36 E-value=0.042 Score=49.72 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998875
No 339
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.35 E-value=0.045 Score=53.47 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...+|+|.|+.|+||||+|+.+...
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998774
No 340
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.33 E-value=0.042 Score=51.80 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
-.+++|.|+.|+|||||++.+..-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 358999999999999999988764
No 341
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.30 E-value=0.044 Score=51.82 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..|+|.|++|+||||+|+.+++.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999876
No 342
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.30 E-value=0.038 Score=51.66 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+|+|.|++|+||||+|+.+++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999875
No 343
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.25 E-value=0.058 Score=54.28 Aligned_cols=26 Identities=27% Similarity=0.187 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
....+|+|.|+.|+|||||++.+..-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 45579999999999999999988764
No 344
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.23 E-value=0.054 Score=52.88 Aligned_cols=26 Identities=35% Similarity=0.365 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
....+|.|.|++|+||||+|+.+...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 44578999999999999999998765
No 345
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.22 E-value=0.049 Score=53.47 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..+|.|.|++|+||||+|+.++..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999998875
No 346
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.22 E-value=0.049 Score=51.64 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
-.+++|.|+.|+|||||++.+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 368999999999999999988764
No 347
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.22 E-value=0.053 Score=50.30 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..+|+|.|+.|+||||+|+.+++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998764
No 348
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.19 E-value=0.056 Score=52.52 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...+|+|.|+.|+||||+++.+...
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999988764
No 349
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.15 E-value=0.054 Score=49.61 Aligned_cols=24 Identities=33% Similarity=0.294 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
-.+|+|.|+.|+||||+++.+...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998875
No 350
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.14 E-value=0.038 Score=52.53 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|+|+.|+|||||++.+...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999988764
No 351
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.06 E-value=0.14 Score=48.90 Aligned_cols=45 Identities=29% Similarity=0.352 Sum_probs=30.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccc---cc-cCCeEEEEEeCCcCC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGV---KR-KFDIVIWVCVSDAFE 80 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~---~~-~f~~~~wv~~~~~~~ 80 (796)
.-.+++|.|+.|+|||||++.++..... .. .-..++|+.......
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 3369999999999999999988752111 11 234588887654333
No 352
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.00 E-value=0.049 Score=50.65 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
+|+|.|..|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 353
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.99 E-value=0.052 Score=52.79 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..+|+|.|+.|+||||+++.+++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999854
No 354
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.95 E-value=0.25 Score=51.72 Aligned_cols=38 Identities=29% Similarity=0.137 Sum_probs=26.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEe
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCV 75 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 75 (796)
..++++|+|.+|+||||++..++.... ..=..+..++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~--~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEeec
Confidence 457899999999999999988887532 22123555554
No 355
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.89 E-value=0.054 Score=49.88 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...+.|+|++|+|||++|.++++.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999888876
No 356
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.85 E-value=0.39 Score=50.35 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...+|.++|.+|+||||++..++..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 3689999999999999999888765
No 357
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.84 E-value=0.056 Score=52.71 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
-.+|+|.|+.|+||||+++.+++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999854
No 358
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.84 E-value=0.035 Score=51.08 Aligned_cols=23 Identities=35% Similarity=0.366 Sum_probs=16.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+|.|.|+.|+||||+|+.+.+.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999998765
No 359
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.81 E-value=0.3 Score=49.34 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
....+++|+|+.|+||||+++.++..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999999988875
No 360
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.79 E-value=0.066 Score=53.12 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=20.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHH
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAF 58 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~ 58 (796)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999987
No 361
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.79 E-value=0.11 Score=57.11 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
+++.|.|.+|+||||++..+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~ 227 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADL 227 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 68899999999999999888765
No 362
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.78 E-value=0.055 Score=50.78 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..|+|.|+.|+||||+++.+.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999876
No 363
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.76 E-value=0.21 Score=52.69 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...+|.|+|++|+||||+|+.++.+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999998875
No 364
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.75 E-value=0.24 Score=53.83 Aligned_cols=52 Identities=12% Similarity=0.031 Sum_probs=35.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEV 91 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 91 (796)
-.++.|.|.+|+||||+|.+++...... .=..++|++... +..++...++..
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHH
Confidence 3589999999999999998887662221 123577776644 556666655443
No 365
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.74 E-value=0.58 Score=60.49 Aligned_cols=139 Identities=15% Similarity=0.060 Sum_probs=75.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHhCCce
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASSLGEFQSLMQQTQESIRGKK 117 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 117 (796)
+-|.++|++|+|||++|+.+.... ..+ ..+.+.++...+...+++.+...+..........-. -.-.+++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~------P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLL------PKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEE------EBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcccc------CCCCCce
Confidence 567899999999999997666542 222 355677777777777766666554321100000000 0014678
Q ss_pred EEEEEeCCCCCCcc------ChhhHhhhccCCC-----C-------CcEEEEEecchh-hhhc------cCccceEEccC
Q 003773 118 FFLVLDDVWDGDFK------KWDPFFSCLKNGH-----H-------ESKILITTRDRS-VALQ------MGSIDIISVKE 172 (796)
Q Consensus 118 ~LlvlDd~~~~~~~------~~~~l~~~~~~~~-----~-------gs~iiiTsr~~~-~~~~------~~~~~~~~l~~ 172 (796)
.++++||+.-...+ ..+.+...+..++ . +..+|.++.... ..+. ......+.+..
T Consensus 1338 ~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~ 1417 (2695)
T 4akg_A 1338 LVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGY 1417 (2695)
T ss_dssp EEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCC
T ss_pred EEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCC
Confidence 99999997433322 2233333332211 1 223444443321 1110 12235788888
Q ss_pred CChHhHHHHHHHHh
Q 003773 173 LGEEECWSLFKQVA 186 (796)
Q Consensus 173 l~~~e~~~lf~~~~ 186 (796)
.+.++-.++|....
T Consensus 1418 P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1418 PSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 88887777776654
No 366
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.72 E-value=0.056 Score=50.36 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.|+|.|..|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 367
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.71 E-value=0.057 Score=51.17 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..+|+|.|+.|+||||+|+.+++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999876
No 368
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.67 E-value=0.055 Score=51.13 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..+|+|.|..|+||||+|+.+.+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999876
No 369
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.66 E-value=0.1 Score=52.86 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
+....|.|+|+.|+||||+++.++..
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 45567999999999999999988875
No 370
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.65 E-value=0.31 Score=51.39 Aligned_cols=42 Identities=26% Similarity=0.150 Sum_probs=29.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSD 77 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 77 (796)
...++|.|+|.+|+||||++..++.....+... .+.-+++..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~-kVllvd~D~ 139 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKK-KVLVVSADV 139 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCC-CEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEEecCC
Confidence 346899999999999999998887653222122 355566554
No 371
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.65 E-value=0.084 Score=58.91 Aligned_cols=44 Identities=25% Similarity=0.286 Sum_probs=34.6
Q ss_pred cCcccccHHHHHHHhcccCCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 14 KLQIEGLDDDNTLALASSEQQKGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 14 ~~~~vGr~~~~~~l~~~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
-.++||.+..++.+......+ ..+.|+|++|+||||+|+.++..
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g---~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQK---RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTT---CCEEEECCTTSSHHHHHHHHHHT
T ss_pred cceEECchhhHhhccccccCC---CEEEEEeCCCCCHHHHHHHHhcc
Confidence 345899998888555444322 48899999999999999999886
No 372
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.65 E-value=0.057 Score=51.23 Aligned_cols=22 Identities=41% Similarity=0.525 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.|+|.|++|+||||+|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998765
No 373
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.62 E-value=0.23 Score=49.46 Aligned_cols=39 Identities=28% Similarity=0.138 Sum_probs=27.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVS 76 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 76 (796)
..++++|+|.+|+||||++..++.... ..=..+.+++..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d 135 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAAD 135 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCC
Confidence 457999999999999999988887532 221235555544
No 374
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.60 E-value=0.062 Score=51.19 Aligned_cols=23 Identities=30% Similarity=0.239 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..|+|.|++|+||||+|+.+++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999875
No 375
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.51 E-value=0.07 Score=53.41 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...+++|+|++|+||||+++.++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3569999999999999999988865
No 376
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.50 E-value=0.061 Score=51.02 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.|+|.|++|+||||+|+.++++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 377
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.50 E-value=0.068 Score=51.49 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.. .+++|.|+.|+|||||++.++--
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 35 79999999999999999998864
No 378
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.48 E-value=0.049 Score=57.24 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=33.5
Q ss_pred cCcccccHHHHHHHhccc-------------CCCCCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 14 KLQIEGLDDDNTLALASS-------------EQQKGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 14 ~~~~vGr~~~~~~l~~~~-------------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...++|.++.++.+..+. ......+-|.++|++|+|||++|+.++..
T Consensus 14 d~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 356899998888443221 10112356889999999999999999876
No 379
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.46 E-value=0.057 Score=49.81 Aligned_cols=22 Identities=41% Similarity=0.421 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
+++|+|+.|+||||+++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999988765
No 380
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.46 E-value=0.36 Score=50.62 Aligned_cols=39 Identities=33% Similarity=0.187 Sum_probs=27.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVS 76 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 76 (796)
..++|.++|.+|+||||++..++..... ... .+..+++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~-~G~-kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK-RGY-KVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH-TTC-CEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCC-eEEEEecC
Confidence 3689999999999999999888866322 222 34455544
No 381
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.39 E-value=0.19 Score=46.64 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCc
Q 003773 40 ISLFGLGGIGKTTLAQLAFNNE 61 (796)
Q Consensus 40 v~I~G~~GiGKTtLa~~~~~~~ 61 (796)
|+|-|..|+||||.++.+++..
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7789999999999999998873
No 382
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.34 E-value=0.063 Score=51.41 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..|+|.|++|+||||+|+.+++.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998864
No 383
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.32 E-value=0.083 Score=50.19 Aligned_cols=22 Identities=36% Similarity=0.392 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 003773 38 RIISLFGLGGIGKTTLAQLAFN 59 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~ 59 (796)
.+|+|.|+.|+||||+++.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999865
No 384
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.31 E-value=0.072 Score=48.29 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..++++|.|..|+||||+++.+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3578999999999999999988875
No 385
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.29 E-value=0.044 Score=49.57 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
++++|+|..|+|||||++.+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999988765
No 386
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.28 E-value=0.11 Score=52.29 Aligned_cols=44 Identities=20% Similarity=0.340 Sum_probs=30.3
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcC
Q 003773 34 QKGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAF 79 (796)
Q Consensus 34 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 79 (796)
....++|+|+|-||+||||+|..++...... . ..++-|++....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~-G-~~VlliD~D~~~ 81 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSIL-G-KRVLQIGCDPKH 81 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHT-T-CCEEEEEESSSC
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHC-C-CeEEEEeCCCCC
Confidence 3456899999999999999998777653222 2 247777776544
No 387
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.28 E-value=0.082 Score=51.20 Aligned_cols=25 Identities=20% Similarity=0.061 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
....|+|.|++|+||||+|+.+.+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999998764
No 388
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.25 E-value=0.048 Score=52.44 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=15.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHH-cC
Q 003773 38 RIISLFGLGGIGKTTLAQLAF-NN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~-~~ 60 (796)
.+++|+|+.|+||||+++.+. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 589999999999999999988 53
No 389
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.23 E-value=0.082 Score=49.91 Aligned_cols=24 Identities=38% Similarity=0.247 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..+|.|.|+.|+||||+|+.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998875
No 390
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.21 E-value=0.082 Score=48.40 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
+.|.|.|+.|+||||||.+++.+
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 67899999999999999999876
No 391
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.15 E-value=0.058 Score=52.26 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..|+|.|+.|+||||+++.++..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999875
No 392
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.10 E-value=0.075 Score=51.72 Aligned_cols=23 Identities=35% Similarity=0.283 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFN 59 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~ 59 (796)
-.+++|.|+.|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 36999999999999999998874
No 393
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.09 E-value=0.1 Score=52.47 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=22.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.++|+|.|+.|+||||||..+++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999986
No 394
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.09 E-value=0.24 Score=49.38 Aligned_cols=87 Identities=17% Similarity=0.085 Sum_probs=45.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCH-HHHHHHHHHHhccCC---CCCccHHHHHHHHHHH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEE-IRIAKAILEVLDKSA---SSLGEFQSLMQQTQES 112 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i~~~l~~~~---~~~~~~~~~~~~~~~~ 112 (796)
.++++++|.+|+||||++..++.... ..=..+.+++....... ...++...+..+... ....+..+......+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK--KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH--HTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 57999999999999999988876532 22223666665533221 222333344433211 1112333333333333
Q ss_pred hC-CceEEEEEeCC
Q 003773 113 IR-GKKFFLVLDDV 125 (796)
Q Consensus 113 l~-~~~~LlvlDd~ 125 (796)
++ ..-=++++|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 33 22237888876
No 395
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.08 E-value=0.14 Score=63.73 Aligned_cols=84 Identities=21% Similarity=0.233 Sum_probs=53.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCC-----CCCccHHHHHHHHH
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSA-----SSLGEFQSLMQQTQ 110 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~~~ 110 (796)
.-+.|.|+|++|+|||+||.+++... ...=..++|+++....+... ++.++... ......++....++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea--~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 45689999999999999999887762 22223477887777665544 44444211 11123344444444
Q ss_pred HHhC-CceEEEEEeCCC
Q 003773 111 ESIR-GKKFFLVLDDVW 126 (796)
Q Consensus 111 ~~l~-~~~~LlvlDd~~ 126 (796)
+..+ .+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 4432 556799999983
No 396
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.07 E-value=0.037 Score=52.45 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
+|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998875
No 397
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.05 E-value=0.076 Score=51.01 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=25.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEE
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWV 73 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv 73 (796)
-.+++|.|+.|+|||||++.+.-- .....+.+++
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl---~~p~~G~I~~ 64 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCL---DKPTEGEVYI 64 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC---CCCCceEEEE
Confidence 358999999999999999988764 2233445554
No 398
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.04 E-value=0.16 Score=53.73 Aligned_cols=84 Identities=21% Similarity=0.218 Sum_probs=48.7
Q ss_pred EEEEEEcCCCCcHHHHH-HHHHcCccccccCCe-EEEEEeCCcC-CHHHHHHHHHHHhccC------CCCCcc-HHH---
Q 003773 38 RIISLFGLGGIGKTTLA-QLAFNNEGVKRKFDI-VIWVCVSDAF-EEIRIAKAILEVLDKS------ASSLGE-FQS--- 104 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa-~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~~~~~-~~~--- 104 (796)
+.++|.|.+|+|||+|| ..+++.. .-+. ++++-+++.. +..++.+.+.+.-... ...... ..+
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a 238 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLA 238 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHH
Confidence 57889999999999996 5777762 3453 5777777643 3344444444321110 011111 111
Q ss_pred --HHHHHHHHh--CCceEEEEEeCC
Q 003773 105 --LMQQTQESI--RGKKFFLVLDDV 125 (796)
Q Consensus 105 --~~~~~~~~l--~~~~~LlvlDd~ 125 (796)
..-.+.+++ .++.+|+++||+
T Consensus 239 ~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 239 PYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecH
Confidence 112233444 589999999998
No 399
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.02 E-value=0.093 Score=51.98 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
++|+|.|+.|+||||||..++..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 68999999999999999999876
No 400
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.00 E-value=0.78 Score=50.75 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|+|+.|.|||||++.+..-
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999988764
No 401
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.98 E-value=0.066 Score=51.08 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..|.|.|++|+||||+|+.+++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999999875
No 402
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.98 E-value=0.078 Score=49.87 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
+|+|.|+.|+||||+|+.++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999998764
No 403
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.97 E-value=0.081 Score=53.35 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+|+|.|+.|+||||+|..++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999998875
No 404
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.96 E-value=0.076 Score=50.59 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|.|+.|+|||||++.++--
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998764
No 405
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.93 E-value=0.098 Score=52.71 Aligned_cols=26 Identities=31% Similarity=0.267 Sum_probs=22.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
....+|+|.|+.|+||||+++.+...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999999988764
No 406
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.86 E-value=0.085 Score=50.28 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+|+|.|++|+||||+|+.++..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998865
No 407
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.75 E-value=0.11 Score=52.08 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...+++|+|+.|+||||+++.++..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3479999999999999999988875
No 408
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.67 E-value=0.075 Score=50.45 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..|.|.|++|+||||+|+.+++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999875
No 409
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.64 E-value=0.071 Score=50.02 Aligned_cols=23 Identities=35% Similarity=0.316 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|.|+.|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999988754
No 410
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.61 E-value=0.087 Score=58.38 Aligned_cols=48 Identities=15% Similarity=-0.015 Sum_probs=34.9
Q ss_pred ccCcccccHHHHHHHhcccCCCCCc----------EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 13 LKLQIEGLDDDNTLALASSEQQKGL----------RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 13 ~~~~~vGr~~~~~~l~~~~~~~~~~----------~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..+.++|.+...+.+...+.+.... .-|.++|++|+|||++|+.+++.
T Consensus 293 l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 293 IAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp TSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred hcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 4567999998777665444322110 14789999999999999998876
No 411
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.55 E-value=0.093 Score=51.61 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|.|+.|+|||||++.++--
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999998764
No 412
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.53 E-value=0.049 Score=54.27 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=19.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...+|+|.|..|+||||+|+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998864
No 413
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.50 E-value=0.078 Score=49.96 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|.|+.|+|||||++.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998764
No 414
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.49 E-value=0.1 Score=52.29 Aligned_cols=23 Identities=35% Similarity=0.333 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
++|+|.|+.|+||||+|+.++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999875
No 415
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.49 E-value=0.18 Score=53.25 Aligned_cols=84 Identities=21% Similarity=0.237 Sum_probs=49.2
Q ss_pred EEEEEEcCCCCcHHHHH-HHHHcCccccccCCe-EEEEEeCCcC-CHHHHHHHHHHHhccC------CCCCcc--HH---
Q 003773 38 RIISLFGLGGIGKTTLA-QLAFNNEGVKRKFDI-VIWVCVSDAF-EEIRIAKAILEVLDKS------ASSLGE--FQ--- 103 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa-~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~~~~~--~~--- 103 (796)
+.++|.|.+|+|||+|| ..+++.. .-+. ++++-+++.. +..++.+.+.+.-... ...... ..
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 251 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIA 251 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHH
Confidence 57889999999999996 5777762 3453 5777777643 3344555554321100 111111 11
Q ss_pred -HHHHHHHHHh--CCceEEEEEeCC
Q 003773 104 -SLMQQTQESI--RGKKFFLVLDDV 125 (796)
Q Consensus 104 -~~~~~~~~~l--~~~~~LlvlDd~ 125 (796)
...-.+.+++ .++.+|+++||+
T Consensus 252 ~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 252 PYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeccH
Confidence 1112233444 588999999998
No 416
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.48 E-value=0.097 Score=49.92 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.|+|.|+.|+||||+|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998865
No 417
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.46 E-value=0.09 Score=49.76 Aligned_cols=22 Identities=36% Similarity=0.376 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.|+|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998875
No 418
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.44 E-value=0.097 Score=51.21 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
-.+++|.|+.|+|||||++.++.-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998764
No 419
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.42 E-value=0.46 Score=50.78 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=33.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAIL 89 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 89 (796)
-.++.|.|.+|+||||+|..++....... =..++|++... +..++...+.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHH
Confidence 35899999999999999988887632211 12477776543 4455555543
No 420
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.42 E-value=0.11 Score=50.33 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
-.+++|+|+.|+|||||++.++.-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 369999999999999999998764
No 421
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.38 E-value=0.096 Score=51.17 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|.|+.|+|||||++.++--
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 58999999999999999998864
No 422
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.35 E-value=0.17 Score=47.03 Aligned_cols=110 Identities=11% Similarity=0.009 Sum_probs=51.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCC--CccHHHHHHHHHHHhC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSASS--LGEFQSLMQQTQESIR 114 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~l~ 114 (796)
-.+..++|.-|.||||.+...+.+.. .......++ ....+ .+.-...++..++..... ..+.. .+.+.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~-~~g~kVli~-k~~~d--~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~~ 99 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQ-FAKQHAIVF-KPCID--NRYSEEDVVSHNGLKVKAVPVSASK----DIFKHIT 99 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH-HTTCCEEEE-ECC-------------------CCEEECSSGG----GGGGGCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEE-EeccC--CcchHHHHHhhcCCeeEEeecCCHH----HHHHHHh
Confidence 46888999999999999976666532 223333333 32221 112222344444332111 11111 2222333
Q ss_pred CceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecchh
Q 003773 115 GKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDRS 157 (796)
Q Consensus 115 ~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~ 157 (796)
++--+|++|.+..-+.+.++.+. .+.. .|..||+|-++.+
T Consensus 100 ~~~dvViIDEaQF~~~~~V~~l~-~l~~--~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIVEVVQ-VLAN--RGYRVIVAGLDQD 139 (214)
T ss_dssp SSCCEEEECCGGGSCTTHHHHHH-HHHH--TTCEEEEEECSBC
T ss_pred cCCCEEEEECcccCCHHHHHHHH-HHhh--CCCEEEEEecccc
Confidence 33349999999664434443333 2222 3668999998654
No 423
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.32 E-value=0.1 Score=51.13 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|.|+.|+|||||++.++.-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999998864
No 424
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.31 E-value=0.1 Score=50.63 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|.|+.|+|||||++.++.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998873
No 425
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.28 E-value=0.1 Score=50.31 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|.|+.|+|||||++.++--
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998864
No 426
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.24 E-value=0.1 Score=50.61 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|.|+.|+|||||++.++.-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998764
No 427
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.24 E-value=0.1 Score=50.90 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|.|+.|+|||||++.++.-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998764
No 428
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=91.16 E-value=0.17 Score=53.59 Aligned_cols=84 Identities=17% Similarity=0.185 Sum_probs=47.6
Q ss_pred EEEEEEcCCCCcHHHHH-HHHHcCccccccCC-eEEEEEeCCcC-CHHHHHHHHHHHhcc--------C-CC-CCc--cH
Q 003773 38 RIISLFGLGGIGKTTLA-QLAFNNEGVKRKFD-IVIWVCVSDAF-EEIRIAKAILEVLDK--------S-AS-SLG--EF 102 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa-~~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~--------~-~~-~~~--~~ 102 (796)
+.++|.|.+|+|||+|| ..+++.. .-+ .++++-+++.. +..++.+.+.+.-.. . +. ... -.
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 57889999999999995 6777762 244 35777777643 233333333321100 0 11 111 11
Q ss_pred HHHHHHHHHHh--CCceEEEEEeCC
Q 003773 103 QSLMQQTQESI--RGKKFFLVLDDV 125 (796)
Q Consensus 103 ~~~~~~~~~~l--~~~~~LlvlDd~ 125 (796)
....-.+.+++ .++.+|+++||+
T Consensus 240 ~~~a~tiAEyfrd~G~dVLli~Dsl 264 (507)
T 1fx0_A 240 PYTGAALAEYFMYRERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecH
Confidence 11222233333 589999999998
No 429
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.15 E-value=0.12 Score=49.34 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=22.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.....|+|+|.+|+|||||+..+...
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999888765
No 430
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.15 E-value=0.12 Score=50.83 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|.|+.|+|||||++.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998874
No 431
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.14 E-value=0.14 Score=50.68 Aligned_cols=25 Identities=32% Similarity=0.163 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..++|+|.|+.|+||||||..+++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 4578999999999999999998865
No 432
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.13 E-value=0.11 Score=50.55 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|.|+.|+|||||++.++--
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998864
No 433
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.10 E-value=0.38 Score=46.10 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=17.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 003773 38 RIISLFGLGGIGKTTLAQLAF 58 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~ 58 (796)
+.+.|.|+.|+||||++..+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 588999999999998765443
No 434
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.07 E-value=0.13 Score=49.83 Aligned_cols=38 Identities=26% Similarity=0.306 Sum_probs=27.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSD 77 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 77 (796)
.++.|.|++|+||||+|.+++... ...=..++|++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccC
Confidence 589999999999999997776542 12223577876544
No 435
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.07 E-value=0.53 Score=49.89 Aligned_cols=50 Identities=16% Similarity=0.095 Sum_probs=33.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILE 90 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 90 (796)
-.++.|.|.+|+||||+|..++.+...+ =..++|++... +..++...+..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~ 246 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIV 246 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHH
Confidence 3589999999999999998887763222 23577765543 34455544443
No 436
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.03 E-value=0.16 Score=51.23 Aligned_cols=40 Identities=28% Similarity=0.225 Sum_probs=28.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVS 76 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 76 (796)
...++|+|+|.+|+||||++..++.... ..=..+.+++..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D 142 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAAD 142 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCC
Confidence 3467999999999999999988876532 222235566544
No 437
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.99 E-value=0.11 Score=50.80 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|+|+.|+|||||++.++.-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999998865
No 438
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.97 E-value=0.12 Score=49.54 Aligned_cols=23 Identities=35% Similarity=0.278 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..|.|.|+.|+||||+|+.+++.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999875
No 439
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.93 E-value=0.15 Score=45.74 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..|+|.|.+|+|||||++.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998864
No 440
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.92 E-value=0.12 Score=50.05 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|.|+.|+|||||++.++--
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999998875
No 441
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.90 E-value=0.12 Score=51.94 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 003773 38 RIISLFGLGGIGKTTLAQLAFN 59 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~ 59 (796)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999886
No 442
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.88 E-value=0.16 Score=49.78 Aligned_cols=26 Identities=31% Similarity=0.272 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
....++.+.|.||+||||++..++..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 45678999999999999999988754
No 443
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.87 E-value=0.15 Score=45.44 Aligned_cols=23 Identities=17% Similarity=0.366 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
+.|+|.|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999988765
No 444
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.85 E-value=0.6 Score=49.67 Aligned_cols=52 Identities=13% Similarity=0.038 Sum_probs=35.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHH
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEV 91 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 91 (796)
-.++.|.|.+|+||||+|..++...... .=..++|++.. .+..++...+...
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHH
Confidence 3589999999999999998887762211 11347777654 3556666665543
No 445
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.85 E-value=0.12 Score=47.77 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
-.|+|.|..|+|||||++.+...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47899999999999999998865
No 446
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.84 E-value=0.11 Score=51.00 Aligned_cols=23 Identities=39% Similarity=0.562 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|+|+.|+|||||++.++.-
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998864
No 447
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.83 E-value=0.12 Score=47.45 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4779999999999999998874
No 448
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.77 E-value=0.15 Score=52.16 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...+++|+|+.|+||||+++.++..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 3579999999999999999988875
No 449
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.73 E-value=0.16 Score=49.66 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.-.+++|+|+.|+||||+++.+...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh
Confidence 4469999999999999999988764
No 450
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.68 E-value=0.13 Score=50.07 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|.|+.|+|||||++.++.-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998875
No 451
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.67 E-value=0.13 Score=50.84 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|.|+.|+|||||++.++.-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999998865
No 452
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.67 E-value=0.34 Score=45.49 Aligned_cols=39 Identities=21% Similarity=0.092 Sum_probs=26.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCc
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDA 78 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 78 (796)
-.|.+.|.||+||||+|..++.... ...++ +..+.+...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~-~~G~~-V~v~d~D~q 45 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQL-RQGVR-VMAGVVETH 45 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH-HTTCC-EEEEECCCT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH-HCCCC-EEEEEeCCC
Confidence 3478999999999999987776632 23344 444555543
No 453
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.62 E-value=0.91 Score=48.67 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=21.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...++|+|+|.+|+||||++.+++..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999999888865
No 454
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.58 E-value=0.14 Score=48.58 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...++|+|+|.+|+|||||+.++...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 35679999999999999999888765
No 455
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.57 E-value=0.13 Score=50.47 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|.|+.|+|||||++.++--
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999998764
No 456
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.56 E-value=0.14 Score=50.99 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.-.+++|+|+.|.|||||++.+..-
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 3368999999999999999988754
No 457
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=90.55 E-value=0.11 Score=52.84 Aligned_cols=39 Identities=15% Similarity=0.037 Sum_probs=27.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccc-ccCCeEEEEEeCC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVK-RKFDIVIWVCVSD 77 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~wv~~~~ 77 (796)
+.++|.|.+|+|||+|+.++++....+ ..+. ++++.+++
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGE 215 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDE 215 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSC
T ss_pred ceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEecc
Confidence 578999999999999999888762211 1222 34566664
No 458
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=90.50 E-value=0.2 Score=52.75 Aligned_cols=84 Identities=21% Similarity=0.247 Sum_probs=48.7
Q ss_pred EEEEEEcCCCCcHHHHH-HHHHcCccccccCC-eEEEEEeCCcC-CHHHHHHHHHHHhccC------CCCCcc--HH---
Q 003773 38 RIISLFGLGGIGKTTLA-QLAFNNEGVKRKFD-IVIWVCVSDAF-EEIRIAKAILEVLDKS------ASSLGE--FQ--- 103 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa-~~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~~~~~--~~--- 103 (796)
+.++|.|.+|+|||+|| ..+.+. ..-+ .++++.+++.. +..++.+.+.+.-... ...... ..
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a 238 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLA 238 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHH
Confidence 57889999999999996 577765 2233 36788888753 3345555544321110 011111 11
Q ss_pred -HHHHHHHHHh--CCceEEEEEeCC
Q 003773 104 -SLMQQTQESI--RGKKFFLVLDDV 125 (796)
Q Consensus 104 -~~~~~~~~~l--~~~~~LlvlDd~ 125 (796)
...-.+.+++ .++.+|+++||+
T Consensus 239 ~~~a~tiAEyfrd~G~dVLli~Dsl 263 (513)
T 3oaa_A 239 PYAGCAMGEYFRDRGEDALIIYDDL 263 (513)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCh
Confidence 1111233333 589999999998
No 459
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.44 E-value=0.21 Score=49.20 Aligned_cols=40 Identities=25% Similarity=0.312 Sum_probs=28.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAF 79 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 79 (796)
++|+|.|.||+||||+|..++.... ..=..++-|+.....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la--~~G~~VlliD~D~q~ 41 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH--AMGKTIMVVGCDPKA 41 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH--TTTCCEEEEEECTTS
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH--HCCCcEEEEcCCCCC
Confidence 5788899999999999988776532 221246777776543
No 460
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.43 E-value=0.14 Score=49.10 Aligned_cols=25 Identities=24% Similarity=0.033 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.-.+|+|.|+.|+||||+++.++..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4479999999999999999988764
No 461
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.41 E-value=0.15 Score=49.13 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...+|+|.|+.|+||||+++.++..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999998864
No 462
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.34 E-value=0.22 Score=46.00 Aligned_cols=25 Identities=28% Similarity=0.218 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999988765
No 463
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.34 E-value=0.37 Score=60.10 Aligned_cols=85 Identities=19% Similarity=0.203 Sum_probs=55.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCC-----CCccHHHHHHHHH
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSAS-----SLGEFQSLMQQTQ 110 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~ 110 (796)
.-+++.|+|++|+||||||.+++... ...=..++|++.....+... ++.++.... ...+.++....++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~--a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 34699999999999999998887763 22223588888777666432 455554321 1234555555555
Q ss_pred HHh-CCceEEEEEeCCCC
Q 003773 111 ESI-RGKKFFLVLDDVWD 127 (796)
Q Consensus 111 ~~l-~~~~~LlvlDd~~~ 127 (796)
+.. ..+.-+||+|.+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 433 24556999999854
No 464
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=90.30 E-value=0.3 Score=51.65 Aligned_cols=88 Identities=19% Similarity=0.246 Sum_probs=49.7
Q ss_pred EEEEEEcCCCCcHHHHH-HHHHcCccc----cccCC-eEEEEEeCCcC-CHHHHHHHHHHHhccC------CCCCcc--H
Q 003773 38 RIISLFGLGGIGKTTLA-QLAFNNEGV----KRKFD-IVIWVCVSDAF-EEIRIAKAILEVLDKS------ASSLGE--F 102 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa-~~~~~~~~~----~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~~~~~--~ 102 (796)
+.++|.|.+|+|||+|| ..+.+.... ..+-+ .++++-+++.. +..++.+.+.+.-... ...... .
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~ 242 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPL 242 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHH
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHH
Confidence 57889999999999995 577776321 01234 47777787653 3344555544321100 011111 1
Q ss_pred H----HHHHHHHHHh--CCceEEEEEeCC
Q 003773 103 Q----SLMQQTQESI--RGKKFFLVLDDV 125 (796)
Q Consensus 103 ~----~~~~~~~~~l--~~~~~LlvlDd~ 125 (796)
. ...-.+.+++ .++.+|+++||+
T Consensus 243 r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 243 QYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 1 1111233444 588999999998
No 465
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.29 E-value=0.36 Score=41.22 Aligned_cols=53 Identities=17% Similarity=0.247 Sum_probs=42.7
Q ss_pred ceEecCCCCcc--ccchhhhccCCccEeeccccccccccch-hhccccCCCeeecCCcc
Q 003773 460 KYLNLSELCIE--RLPETLCELYNLQKLAVRWCTNLRELPA-GIGKLMNMRSLMNGQTE 515 (796)
Q Consensus 460 ~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~ 515 (796)
..++.+++.++ .+|..+. .+|++|+|++|. +..+|. .|..+++|+.|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 47888888888 8987542 479999999987 777765 46789999999999883
No 466
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.27 E-value=0.37 Score=44.30 Aligned_cols=92 Identities=16% Similarity=0.083 Sum_probs=57.2
Q ss_pred hhHHHhhhcCcccceeeecccccCCCcccccc-----cccccccCccccceEecCCCCcc-----ccchhhhccCCccEe
Q 003773 416 SILVELFSKVACLRALVIRQWFVPLDDQNFIR-----EIPENIGKLIHLKYLNLSELCIE-----RLPETLCELYNLQKL 485 (796)
Q Consensus 416 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L 485 (796)
..+..+..+-+.|+.|+|++ ++.+. .+-..+..-..|+.|+|++|.|. .+...+..=..|++|
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~-------nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L 103 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINN-------MKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVL 103 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTT-------CCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEE
T ss_pred HHHHHHHhcCCCccEEECCC-------CCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeE
Confidence 34555566777888888873 12332 24455666778888888888876 344455555778888
Q ss_pred eccccccccc----cchhhccccCCCeeecCCc
Q 003773 486 AVRWCTNLRE----LPAGIGKLMNMRSLMNGQT 514 (796)
Q Consensus 486 ~l~~~~~~~~----lp~~~~~l~~L~~L~l~~~ 514 (796)
+|++|..-.. +-..+..=+.|++|+|++|
T Consensus 104 ~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 104 NVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp ECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred ecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 8887763321 2223444455777777654
No 467
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.23 E-value=0.18 Score=48.15 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNNE 61 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 61 (796)
.-..|+|.|+.|+||||+++.+++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998864
No 468
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.20 E-value=0.16 Score=52.39 Aligned_cols=26 Identities=31% Similarity=0.151 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...++++|+|++|+||||+++.++..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34469999999999999999998864
No 469
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=90.20 E-value=0.79 Score=47.90 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=22.9
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHc
Q 003773 34 QKGLRIISLFGLGGIGKTTLAQLAFN 59 (796)
Q Consensus 34 ~~~~~~v~I~G~~GiGKTtLa~~~~~ 59 (796)
....++..|.|.+|.||||++++.++
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 35678999999999999999988875
No 470
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.19 E-value=0.16 Score=47.28 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
-.|+|.|..|+|||||++.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999998865
No 471
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.02 E-value=0.15 Score=50.03 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.++|+|+.|+|||||++.++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999988864
No 472
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=89.98 E-value=0.8 Score=48.84 Aligned_cols=47 Identities=15% Similarity=0.182 Sum_probs=34.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCC-HHHHHHHH
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFE-EIRIAKAI 88 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i 88 (796)
+.++|.|.+|+|||+|+.++++. .+-+.++++-+++... ..++.+.+
T Consensus 228 qr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 228 GTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp CEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred CeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 58899999999999999998764 2336788888887654 34444443
No 473
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=89.97 E-value=0.22 Score=51.94 Aligned_cols=88 Identities=11% Similarity=0.196 Sum_probs=50.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccc--------ccCC-eEEEEEeCCcC-CHHHHHHHHHHH--hcc-----CCCCCc
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVK--------RKFD-IVIWVCVSDAF-EEIRIAKAILEV--LDK-----SASSLG 100 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~~~~~i~~~--l~~-----~~~~~~ 100 (796)
+.++|.|.+|+|||+|+.++++..... .+-+ .++++-+++.. ...++.+.+.+. +.. ......
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 467899999999999999888774331 1112 56677676543 344555544432 110 001111
Q ss_pred cH-----HHHHHHHHHHh---CCceEEEEEeCC
Q 003773 101 EF-----QSLMQQTQESI---RGKKFFLVLDDV 125 (796)
Q Consensus 101 ~~-----~~~~~~~~~~l---~~~~~LlvlDd~ 125 (796)
.. ....-.+.+++ .++.+|+++||+
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 11 11222344554 378999999998
No 474
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=89.96 E-value=0.45 Score=49.65 Aligned_cols=86 Identities=13% Similarity=0.225 Sum_probs=50.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCC----eEEEEEeCCc-CCHHHHHHHHHHH--hcc-----CCCCCccH---
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFD----IVIWVCVSDA-FEEIRIAKAILEV--LDK-----SASSLGEF--- 102 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~----~~~wv~~~~~-~~~~~~~~~i~~~--l~~-----~~~~~~~~--- 102 (796)
+.++|.|.+|+|||+|+.++++.... +-+ .++++-+++. ....++.+.+.+. +.. ........
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 45789999999999999988887332 223 5667767654 3344555554442 110 01111111
Q ss_pred --HHHHHHHHHHh---CCceEEEEEeCC
Q 003773 103 --QSLMQQTQESI---RGKKFFLVLDDV 125 (796)
Q Consensus 103 --~~~~~~~~~~l---~~~~~LlvlDd~ 125 (796)
....-.+.+++ .++.+|+++||+
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 11122344554 378999999998
No 475
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.95 E-value=0.18 Score=44.79 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
+.|.|.|.+|+||||+|.++..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 57889999999999999988764
No 476
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.92 E-value=0.16 Score=49.54 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|.|+.|+|||||++.++.-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998864
No 477
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=89.88 E-value=0.23 Score=52.18 Aligned_cols=88 Identities=11% Similarity=0.144 Sum_probs=51.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCcccccc--CCeEEEEEeCCcC-CHHHHHHHHHHHhccC-------CCCCcc-----H
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRK--FDIVIWVCVSDAF-EEIRIAKAILEVLDKS-------ASSLGE-----F 102 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~-----~ 102 (796)
+.++|.|.+|+|||+|+.++++.....+. =+.++++-+++.. ...++.+.+.+.-... ...... .
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 56788999999999999999887433221 1356677666543 3445555554421110 111111 1
Q ss_pred HHHHHHHHHHh---CCceEEEEEeCC
Q 003773 103 QSLMQQTQESI---RGKKFFLVLDDV 125 (796)
Q Consensus 103 ~~~~~~~~~~l---~~~~~LlvlDd~ 125 (796)
....-.+.+++ .++.+|+++||+
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 11222344444 378999999997
No 478
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=89.85 E-value=0.2 Score=53.15 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...+++|+|..|+||||+++.++..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH
Confidence 4579999999999999999988865
No 479
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.79 E-value=0.25 Score=45.25 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
...|+|.|.+|+|||||+..+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999874
No 480
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.77 E-value=0.92 Score=50.18 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|+|+.|.|||||++.+..-
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999988764
No 481
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.76 E-value=0.15 Score=50.52 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.++.|+|++|+|||||+..++..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999887754
No 482
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=89.72 E-value=0.2 Score=48.54 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=22.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
+....|.++|++|+|||.+|.++++.
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 33457999999999999999999874
No 483
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=89.71 E-value=0.25 Score=49.20 Aligned_cols=40 Identities=28% Similarity=0.317 Sum_probs=28.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAF 79 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 79 (796)
++|+|.|.||+||||+|..++...... . ..++-|+.....
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~-G-~rVlliD~D~q~ 42 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEM-G-KKVMIVGCDPKA 42 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHT-T-CCEEEEEECSSS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHC-C-CeEEEEecCCCC
Confidence 688889999999999998887653221 2 246677776543
No 484
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.61 E-value=0.19 Score=46.04 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 003773 38 RIISLFGLGGIGKTTLAQLAFN 59 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~ 59 (796)
.+.+|+|+.|+|||||+.+++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3889999999999999988764
No 485
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.56 E-value=0.2 Score=45.28 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
-.|+|.|.+|+|||||+..+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 45889999999999999998775
No 486
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.55 E-value=0.13 Score=51.26 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
-.+++|+|+.|.|||||++.+..-
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 368999999999999999988764
No 487
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.50 E-value=0.25 Score=44.81 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
....|+|.|.+|+|||||+..+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999998764
No 488
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.38 E-value=0.18 Score=50.48 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=26.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVS 76 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 76 (796)
.+++|.|++|+|||||++.++........ ..++|+...
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G-~~v~~~~~e 73 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMG-KKVGLAMLE 73 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSC-CCEEEEESS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcC-CeEEEEeCc
Confidence 58999999999999999988775322211 136666543
No 489
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.37 E-value=0.48 Score=44.47 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCc
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNNE 61 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~~ 61 (796)
..|.|.|+.|+||||+++.+.+..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998763
No 490
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.35 E-value=0.2 Score=48.29 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..|+|.|..|+||||+++.+++.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999998876
No 491
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=89.31 E-value=1.2 Score=42.75 Aligned_cols=101 Identities=17% Similarity=0.181 Sum_probs=52.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhcc---C-C-------CC-----CccHH
Q 003773 40 ISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDK---S-A-------SS-----LGEFQ 103 (796)
Q Consensus 40 v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~---~-~-------~~-----~~~~~ 103 (796)
+.|+|+.|.|||.+|..++... . ..++++. . ...+..++.+.+.. . . .. ....+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~----~-~~~liv~-P----~~~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~ 180 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL----S-TPTLIVV-P----TLALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYD 180 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS----C-SCEEEEE-S----SHHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc----C-CCEEEEe-C----CHHHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHH
Confidence 7789999999999997776542 1 2344443 1 12344444443322 1 0 00 01123
Q ss_pred HHHHHHHHHhCCceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEec
Q 003773 104 SLMQQTQESIRGKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTR 154 (796)
Q Consensus 104 ~~~~~~~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr 154 (796)
.+.... +.+.++--+||+|++.......+..+...++ ...++.+|..
T Consensus 181 ~l~~~~-~~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSAT 227 (237)
T 2fz4_A 181 SAYVNA-EKLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTAT 227 (237)
T ss_dssp HHHHTH-HHHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEES
T ss_pred HHHhhH-HHhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEecC
Confidence 332222 2334445689999997654455665555443 2234555543
No 492
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.29 E-value=0.19 Score=51.83 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
++|+|.|+.|+||||||..++..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 58999999999999999998865
No 493
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.26 E-value=0.18 Score=44.92 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003773 39 IISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 39 ~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.|++.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988765
No 494
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.25 E-value=0.17 Score=50.14 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|.|+.|+|||||++.++.-
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999998875
No 495
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=89.24 E-value=0.11 Score=47.89 Aligned_cols=110 Identities=8% Similarity=-0.001 Sum_probs=53.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCcCCHHHHHHHHHHHhccCCC--CCccHHHHHHHHHHHhC
Q 003773 37 LRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDAFEEIRIAKAILEVLDKSAS--SLGEFQSLMQQTQESIR 114 (796)
Q Consensus 37 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~~~~l~ 114 (796)
-++..++|..|.||||.+..++++.. .......++ ....+ .+.-...+...++.... ...+.. .+.+.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~-~~g~kV~v~-k~~~d--~r~~~~~i~s~~g~~~~a~~~~~~~----~i~~~~~ 79 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK-IAKQKIQVF-KPEID--NRYSKEDVVSHMGEKEQAVAIKNSR----EILKYFE 79 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEE-EEC---------CEEECTTSCEEECEEESSST----HHHHHCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEE-EeccC--ccchHHHHHhhcCCceeeEeeCCHH----HHHHHHh
Confidence 37999999999999999877766532 223343333 21111 11111122222221100 011111 2333344
Q ss_pred CceEEEEEeCCCCCCccChhhHhhhccCCCCCcEEEEEecchh
Q 003773 115 GKKFFLVLDDVWDGDFKKWDPFFSCLKNGHHESKILITTRDRS 157 (796)
Q Consensus 115 ~~~~LlvlDd~~~~~~~~~~~l~~~~~~~~~gs~iiiTsr~~~ 157 (796)
++-=+|++|.+..-+.+..+.+....+ .|..||+|.++.+
T Consensus 80 ~~~dvViIDEaqfl~~~~v~~l~~l~~---~~~~Vi~~Gl~~d 119 (191)
T 1xx6_A 80 EDTEVIAIDEVQFFDDEIVEIVNKIAE---SGRRVICAGLDMD 119 (191)
T ss_dssp TTCSEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEEECSBC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEecccc
Confidence 433489999985543333333332222 2667999988543
No 496
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=89.17 E-value=0.27 Score=50.14 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=29.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcCccccccCCeEEEEEeCCc
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNNEGVKRKFDIVIWVCVSDA 78 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 78 (796)
...+++.+.|.||+||||+|..++........=..++-|+....
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPA 59 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 45689999999999999999887765220022234666666643
No 497
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.14 E-value=0.25 Score=50.83 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 35 KGLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 35 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
....+|+|+|.+|+||||++..+...
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 46689999999999999999888754
No 498
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.13 E-value=0.17 Score=51.14 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=22.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 003773 36 GLRIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 36 ~~~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..++++|.|+.|+||||+++.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4689999999999999999998864
No 499
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.12 E-value=0.21 Score=45.19 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
..|+|+|.+|+|||||+..+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999998875
No 500
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.12 E-value=0.2 Score=51.16 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 003773 38 RIISLFGLGGIGKTTLAQLAFNN 60 (796)
Q Consensus 38 ~~v~I~G~~GiGKTtLa~~~~~~ 60 (796)
.+++|.|+.|+|||||.+.++--
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 58999999999999999999874
Done!