BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003776
(796 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
pdb|2AVN|B Chain B, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
Length = 260
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 6/123 (4%)
Query: 393 VLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGI 452
VLD+G G + FL +RG + P E ++ A E+G+ + E LPFP
Sbjct: 58 VLDLGGGTGKWSLFLQERGFEVVLVDPSKE---XLEVAREKGVKNVVEAKA-EDLPFPSG 113
Query: 453 VFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVE--IWNAMSQ 510
F+AV + + K E+ RVL P G I + Y L + +E W+ +++
Sbjct: 114 AFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQXIEKDAWDQITR 173
Query: 511 LIK 513
+K
Sbjct: 174 FLK 176
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 50/121 (41%), Gaps = 27/121 (22%)
Query: 393 VLDVGCGVASFGGFLFDRGVLTMSFAP-----------KDEHEAQVQFALERGIPAISAV 441
VLD+G G G ++F+P K+ E FA E+G+ +
Sbjct: 25 VLDIGAGA----------GHTALAFSPYVQECIGVDATKEXVEVASSFAQEKGVENVRFQ 74
Query: 442 MGT-ERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPE 500
GT E LPFP FD + C R + K + E+ RVL+ G F+ V PE
Sbjct: 75 QGTAESLPFPDDSFDIITC-RYAAHHFSDVRKAVREVARVLKQDGRFLL----VDHYAPE 129
Query: 501 D 501
D
Sbjct: 130 D 130
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 388 KRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGI-PAISAVMG-TE 445
K+ VLDVGCG +G + R D E +Q ERG P +S + G
Sbjct: 52 KKEAEVLDVGCG-DGYGTYKLSR--TGYKAVGVDISEVXIQKGKERGEGPDLSFIKGDLS 108
Query: 446 RLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGF 486
LPF F+A+ A + W E + L E+ RVL+ G+
Sbjct: 109 SLPFENEQFEAIX-AINSLEWTEEPLRALNEIKRVLKSDGY 148
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 35.0 bits (79), Expect = 0.17, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
Query: 386 WGKRTRVVLDVGCGVASFGGFLFDRGVLTMSF-APKDEHEAQVQFALERGIPAISAVMGT 444
+ K+ VLD+ CGV F L D G + +D ++A R V
Sbjct: 35 YXKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDXIRKAREYAKSRESNVEFIVGDA 94
Query: 445 ERLPFPGIVFDAVHCARCRVPWH-IEGGKLLLELNRVLRPGGFFIWSATPVYQKLP 499
+L F FD V V + +E ++ E+ RVL+P G FI T + + LP
Sbjct: 95 RKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIXYFTDLRELLP 150
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
Length = 211
Score = 32.7 bits (73), Expect = 0.71, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 23/129 (17%)
Query: 445 ERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFI---------WSATPVY 495
E LPFPG FD V + + + ++LLE RVLRPGG + W+A +Y
Sbjct: 87 EALPFPGESFDVV-LLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALSPWAA--LY 143
Query: 496 QKLPED-VEIWNAMSQLIKAMCWELVSISKDTINKVGIAVYRKPTSNECYE------KRS 548
++L E V W L + L+ + G AV+ P ++ YE +R+
Sbjct: 144 RRLGEKGVLPWAQARFLAREDLKALLGPPEAE----GEAVFLAPEAHPPYEEADLAGRRA 199
Query: 549 QQQPPVCLG 557
+P + LG
Sbjct: 200 GNRPALYLG 208
>pdb|2PXX|A Chain A, Human Putative Methyltransferase Mgc2408
Length = 215
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 17/121 (14%)
Query: 393 VLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAIS-AVMGTERLPFPG 451
+L +GCG ++ LF G ++ A +P + M +L FP
Sbjct: 46 ILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPS 105
Query: 452 IVFDAVH--------CARCRVPWHI--EG----GKLLLELNRVLRPGGFFI--WSATPVY 495
FD V A R PW + EG ++L E++RVL PGG FI SA P +
Sbjct: 106 ASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHF 165
Query: 496 Q 496
+
Sbjct: 166 R 166
>pdb|2LD4|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
Anamorsin
Length = 176
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 727 VVAEVDRILRPEGKLIVRDDVETINELESMVK 758
++AE+ RILRP G L +++ VET + S VK
Sbjct: 83 ILAEIARILRPGGCLFLKEPVETAVDNNSKVK 114
>pdb|2YUI|A Chain A, Solution Structure Of The N-Terminal Domain In Human
Cytokine-Induced Apoptosis Inhibitor Anamorsin
Length = 182
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 727 VVAEVDRILRPEGKLIVRDDVETINELESMVK 758
++AE+ RILRP G L +++ VET + S VK
Sbjct: 86 ILAEIARILRPGGCLFLKEPVETAVDNNSKVK 117
>pdb|1XOC|A Chain A, The Structure Of The Oligopeptide-Binding Protein, Appa,
From Bacillus Subtilis In Complex With A Nonapeptide
Length = 520
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 698 SFSTYPRTYDLLHADHLFSKIKKRCNLV-AVVAEVDRILRPEGKLIVRDDVETINELESM 756
S ST+P YD+ H+ S+IKK N V AE D++++ + D + E E +
Sbjct: 420 SLSTFPDQYDIFHS----SQIKKGLNYVWYKNAEADKLMKDAKS--ISDRKQYSKEYEQI 473
Query: 757 VKGMQWEVRMTYSKDKEGLLCVEKSMWRPKELETIKY 793
+ + + T+ L M P+ LE KY
Sbjct: 474 YQKIAEDQPYTF------LYYPNNHMAMPENLEGYKY 504
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 47/115 (40%), Gaps = 24/115 (20%)
Query: 383 DVAWGKRTRVVLDVGCGVASFGGFLF---DRGVLTMSFAPKDEHEAQVQFALERGIP--A 437
DV G R VLDVGCG+ L D V +S + ++A + A G+
Sbjct: 58 DVRSGDR---VLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANAR-ATAAGLANRV 113
Query: 438 ISAVMGTERLPFPGIVFDAVHCARCRVPWHIEG-------GKLLLELNRVLRPGG 485
+ LPF FDAV W +E G+ L E RVLRPGG
Sbjct: 114 TFSYADAXDLPFEDASFDAV--------WALESLHHXPDRGRALREXARVLRPGG 160
>pdb|1YQ2|A Chain A, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|B Chain B, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|C Chain C, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|D Chain D, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|E Chain E, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|F Chain F, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
Length = 1024
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 455 DAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVE 503
D+ H W ++GG+L L ++ G +W V LP DV+
Sbjct: 835 DSTHSVAVEENWQLDGGELCLRIDITPSAGWNLVWPRIGVRWDLPTDVD 883
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,275,793
Number of Sequences: 62578
Number of extensions: 914087
Number of successful extensions: 1671
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1658
Number of HSP's gapped (non-prelim): 18
length of query: 796
length of database: 14,973,337
effective HSP length: 107
effective length of query: 689
effective length of database: 8,277,491
effective search space: 5703191299
effective search space used: 5703191299
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)