Query 003776
Match_columns 796
No_of_seqs 671 out of 3851
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 11:50:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003776.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003776hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 3E-143 7E-148 1187.5 29.0 497 275-780 1-506 (506)
2 PF03141 Methyltransf_29: Puta 100.0 1.9E-35 4.2E-40 329.0 5.0 194 568-782 33-262 (506)
3 KOG2940 Predicted methyltransf 99.8 3.8E-22 8.1E-27 202.7 5.2 220 388-643 71-297 (325)
4 PRK10258 biotin biosynthesis p 99.8 3.7E-19 8E-24 186.8 13.9 217 374-641 31-249 (251)
5 PLN02336 phosphoethanolamine N 99.7 7.7E-18 1.7E-22 192.7 10.7 111 375-492 27-143 (475)
6 COG2226 UbiE Methylase involve 99.7 9.4E-16 2E-20 160.5 14.5 115 372-492 38-157 (238)
7 PF01209 Ubie_methyltran: ubiE 99.6 2E-15 4.3E-20 158.3 10.2 104 388-492 46-154 (233)
8 PF08241 Methyltransf_11: Meth 99.6 5.7E-15 1.2E-19 129.7 7.4 92 394-489 1-95 (95)
9 PRK11088 rrmA 23S rRNA methylt 99.5 4.2E-14 9.1E-19 151.0 13.6 156 329-503 17-192 (272)
10 PLN02233 ubiquinone biosynthes 99.5 2.1E-13 4.5E-18 145.2 15.4 104 388-492 72-183 (261)
11 PLN02244 tocopherol O-methyltr 99.5 3.9E-13 8.4E-18 148.3 16.4 124 366-491 94-223 (340)
12 PTZ00098 phosphoethanolamine N 99.5 5.6E-13 1.2E-17 142.0 14.5 115 372-492 39-157 (263)
13 TIGR02752 MenG_heptapren 2-hep 99.5 2.2E-12 4.9E-17 133.5 18.1 114 373-492 33-152 (231)
14 TIGR02072 BioC biotin biosynth 99.4 4.3E-13 9.3E-18 137.8 11.9 110 390-505 35-148 (240)
15 KOG1540 Ubiquinone biosynthesi 99.4 7.9E-13 1.7E-17 137.5 13.0 101 388-490 99-213 (296)
16 PF13489 Methyltransf_23: Meth 99.4 1.5E-13 3.2E-18 132.7 7.1 109 373-495 9-119 (161)
17 PRK15068 tRNA mo(5)U34 methylt 99.4 4.3E-12 9.2E-17 139.2 15.7 111 375-491 112-226 (322)
18 PRK14103 trans-aconitate 2-met 99.4 1.2E-12 2.7E-17 138.2 10.9 95 388-491 28-126 (255)
19 PLN02396 hexaprenyldihydroxybe 99.4 3.8E-12 8.2E-17 139.5 14.9 102 389-492 131-236 (322)
20 COG2227 UbiG 2-polyprenyl-3-me 99.4 1.5E-12 3.2E-17 135.3 9.3 101 389-492 59-162 (243)
21 PF13847 Methyltransf_31: Meth 99.4 4.7E-12 1E-16 123.2 11.8 101 389-492 3-111 (152)
22 TIGR00477 tehB tellurite resis 99.3 6.2E-12 1.4E-16 128.1 12.3 98 390-490 31-132 (195)
23 PLN02336 phosphoethanolamine N 99.3 1E-11 2.2E-16 142.5 15.4 103 388-492 265-370 (475)
24 PRK11207 tellurite resistance 99.3 6.8E-12 1.5E-16 128.1 12.5 99 389-490 30-133 (197)
25 PF12847 Methyltransf_18: Meth 99.3 6E-12 1.3E-16 115.1 10.8 101 389-491 1-111 (112)
26 PRK11873 arsM arsenite S-adeno 99.3 1.1E-11 2.4E-16 132.0 13.9 109 388-498 76-190 (272)
27 PRK05785 hypothetical protein; 99.3 9.4E-12 2E-16 129.9 13.1 87 390-485 52-141 (226)
28 TIGR00740 methyltransferase, p 99.3 2.6E-11 5.6E-16 126.9 15.7 103 389-494 53-164 (239)
29 PRK11036 putative S-adenosyl-L 99.3 6.9E-12 1.5E-16 132.6 11.2 100 389-490 44-148 (255)
30 PRK01683 trans-aconitate 2-met 99.3 1.2E-11 2.5E-16 130.5 12.2 107 374-491 20-130 (258)
31 TIGR00452 methyltransferase, p 99.3 1.6E-11 3.5E-16 134.1 13.4 102 389-492 121-226 (314)
32 PRK15451 tRNA cmo(5)U34 methyl 99.3 2.6E-11 5.7E-16 127.9 14.2 101 389-493 56-166 (247)
33 KOG4300 Predicted methyltransf 99.3 1.9E-11 4E-16 123.9 11.5 101 391-492 78-183 (252)
34 PRK08317 hypothetical protein; 99.3 5.4E-11 1.2E-15 122.0 14.1 115 372-492 6-125 (241)
35 PRK00107 gidB 16S rRNA methylt 99.3 9.2E-11 2E-15 119.3 15.3 116 389-520 45-165 (187)
36 PF13649 Methyltransf_25: Meth 99.3 5.6E-12 1.2E-16 114.4 5.8 92 393-485 1-101 (101)
37 PF02353 CMAS: Mycolic acid cy 99.2 2.7E-11 5.9E-16 130.0 11.1 124 358-491 35-166 (273)
38 PF08242 Methyltransf_12: Meth 99.2 3.2E-12 7E-17 115.1 2.4 93 394-487 1-99 (99)
39 PRK01544 bifunctional N5-gluta 99.2 2.6E-10 5.6E-15 132.2 18.6 99 390-490 139-268 (506)
40 PLN02490 MPBQ/MSBQ methyltrans 99.2 9.3E-11 2E-15 129.3 14.1 100 389-492 113-216 (340)
41 PRK00121 trmB tRNA (guanine-N( 99.2 3.9E-11 8.5E-16 123.0 10.4 100 389-490 40-155 (202)
42 COG2230 Cfa Cyclopropane fatty 99.2 8.4E-11 1.8E-15 125.8 12.9 142 345-496 30-181 (283)
43 PRK12335 tellurite resistance 99.2 9.3E-11 2E-15 126.4 12.1 98 390-490 121-222 (287)
44 PF03848 TehB: Tellurite resis 99.2 2.4E-10 5.1E-15 116.6 12.3 108 377-490 22-132 (192)
45 TIGR00406 prmA ribosomal prote 99.1 2.7E-10 5.8E-15 123.1 13.0 120 366-492 138-260 (288)
46 TIGR00091 tRNA (guanine-N(7)-) 99.1 1.8E-10 4E-15 117.2 10.9 101 389-491 16-132 (194)
47 PRK06922 hypothetical protein; 99.1 1.7E-10 3.6E-15 135.0 11.7 102 389-492 418-538 (677)
48 TIGR02469 CbiT precorrin-6Y C5 99.1 1.1E-09 2.3E-14 101.4 13.8 97 389-490 19-121 (124)
49 TIGR02021 BchM-ChlM magnesium 99.1 1.5E-10 3.2E-15 119.5 8.5 114 371-490 39-157 (219)
50 smart00828 PKS_MT Methyltransf 99.1 3.1E-10 6.7E-15 117.0 10.8 98 392-492 2-105 (224)
51 smart00138 MeTrc Methyltransfe 99.1 3.4E-10 7.4E-15 120.9 10.9 101 389-490 99-241 (264)
52 PRK00216 ubiE ubiquinone/menaq 99.1 3.5E-09 7.5E-14 109.2 17.8 103 389-492 51-159 (239)
53 PRK11188 rrmJ 23S rRNA methylt 99.1 5E-10 1.1E-14 115.7 10.8 92 388-491 50-165 (209)
54 PRK09489 rsmC 16S ribosomal RN 99.1 5E-10 1.1E-14 123.9 11.5 112 373-492 184-304 (342)
55 COG4106 Tam Trans-aconitate me 99.1 2.2E-10 4.8E-15 117.1 7.8 141 376-540 21-165 (257)
56 TIGR01934 MenG_MenH_UbiE ubiqu 99.1 1.8E-09 3.9E-14 110.2 14.4 101 389-492 39-144 (223)
57 PF05175 MTS: Methyltransferas 99.1 5E-10 1.1E-14 111.7 9.9 111 374-491 20-140 (170)
58 TIGR00537 hemK_rel_arch HemK-r 99.1 2.3E-09 5E-14 107.4 14.0 99 390-491 20-140 (179)
59 PRK11705 cyclopropane fatty ac 99.0 1.1E-09 2.3E-14 123.1 12.4 113 368-491 150-267 (383)
60 PF08003 Methyltransf_9: Prote 99.0 1.4E-09 3.1E-14 116.9 12.1 109 375-492 105-220 (315)
61 TIGR00138 gidB 16S rRNA methyl 99.0 2E-09 4.3E-14 108.9 12.3 94 390-490 43-141 (181)
62 PRK15001 SAM-dependent 23S rib 99.0 2.1E-09 4.6E-14 120.2 13.7 111 374-491 217-340 (378)
63 KOG1541 Predicted protein carb 99.0 1.4E-09 3.1E-14 111.4 11.0 96 389-490 50-159 (270)
64 PF06325 PrmA: Ribosomal prote 99.0 1.7E-09 3.8E-14 117.2 12.5 120 364-492 138-260 (295)
65 TIGR03840 TMPT_Se_Te thiopurin 99.0 1.9E-09 4.2E-14 111.8 12.3 102 389-490 34-151 (213)
66 COG2264 PrmA Ribosomal protein 99.0 9E-10 2E-14 118.9 10.2 120 365-491 140-263 (300)
67 TIGR03587 Pse_Me-ase pseudamin 99.0 1.7E-09 3.7E-14 111.4 11.7 96 389-492 43-143 (204)
68 PRK13944 protein-L-isoaspartat 99.0 3.4E-09 7.3E-14 109.0 13.4 107 372-490 59-172 (205)
69 PF07021 MetW: Methionine bios 99.0 1.2E-09 2.5E-14 110.9 9.6 105 375-497 5-114 (193)
70 PRK00517 prmA ribosomal protei 99.0 3.2E-09 6.9E-14 112.4 13.2 93 389-492 119-214 (250)
71 PRK14121 tRNA (guanine-N(7)-)- 99.0 2.9E-09 6.2E-14 119.0 13.3 100 389-490 122-234 (390)
72 PRK14967 putative methyltransf 99.0 1E-08 2.2E-13 106.5 16.7 100 389-490 36-158 (223)
73 PRK08287 cobalt-precorrin-6Y C 99.0 7.3E-09 1.6E-13 104.5 15.0 95 389-490 31-130 (187)
74 KOG1270 Methyltransferases [Co 99.0 5.2E-10 1.1E-14 117.4 6.0 97 390-491 90-195 (282)
75 PRK06202 hypothetical protein; 99.0 3.2E-09 6.9E-14 110.7 11.7 97 388-490 59-165 (232)
76 PF05401 NodS: Nodulation prot 99.0 1.7E-09 3.6E-14 110.0 9.1 111 372-491 30-146 (201)
77 PRK05134 bifunctional 3-demeth 99.0 4.2E-09 9.2E-14 109.4 12.4 113 374-492 37-152 (233)
78 COG2813 RsmC 16S RNA G1207 met 99.0 2.4E-09 5.1E-14 115.2 10.5 130 356-492 128-267 (300)
79 TIGR01983 UbiG ubiquinone bios 99.0 5.1E-09 1.1E-13 107.8 12.5 101 389-491 45-149 (224)
80 PRK13942 protein-L-isoaspartat 99.0 5.6E-09 1.2E-13 108.0 12.5 107 372-490 63-175 (212)
81 TIGR00080 pimt protein-L-isoas 99.0 6E-09 1.3E-13 107.7 12.7 106 373-490 65-176 (215)
82 TIGR03438 probable methyltrans 98.9 8.4E-09 1.8E-13 112.2 13.7 106 389-494 63-180 (301)
83 PRK14968 putative methyltransf 98.9 2.7E-08 5.9E-13 99.1 15.2 101 389-491 23-148 (188)
84 KOG3010 Methyltransferase [Gen 98.9 2.1E-09 4.5E-14 111.7 7.0 91 390-488 34-133 (261)
85 TIGR03534 RF_mod_PrmC protein- 98.9 2.3E-08 5.1E-13 104.4 14.8 115 370-491 73-217 (251)
86 PLN02585 magnesium protoporphy 98.9 1.1E-08 2.5E-13 112.0 12.3 112 372-488 128-247 (315)
87 PRK13255 thiopurine S-methyltr 98.9 1.5E-08 3.2E-13 105.6 12.0 101 389-489 37-153 (218)
88 PRK04266 fibrillarin; Provisio 98.9 2.1E-08 4.5E-13 105.1 12.8 97 388-490 71-175 (226)
89 PRK07580 Mg-protoporphyrin IX 98.9 1.4E-08 2.9E-13 104.9 11.2 96 389-488 63-163 (230)
90 TIGR01177 conserved hypothetic 98.9 2.1E-08 4.5E-13 110.4 13.2 104 388-492 181-295 (329)
91 KOG1271 Methyltransferases [Ge 98.8 1.6E-08 3.4E-13 101.3 10.7 130 373-505 51-193 (227)
92 PRK07402 precorrin-6B methylas 98.8 3.9E-08 8.5E-13 100.0 14.1 106 376-491 31-142 (196)
93 PRK00377 cbiT cobalt-precorrin 98.8 3.5E-08 7.6E-13 100.7 13.6 98 388-490 39-144 (198)
94 TIGR02716 C20_methyl_CrtF C-20 98.8 4.1E-08 8.9E-13 106.7 14.7 100 388-492 148-255 (306)
95 PLN03075 nicotianamine synthas 98.8 1.8E-08 3.8E-13 109.2 11.4 101 389-490 123-232 (296)
96 PF13659 Methyltransf_26: Meth 98.8 5.3E-09 1.2E-13 96.5 6.1 101 390-491 1-115 (117)
97 COG4976 Predicted methyltransf 98.8 1.1E-09 2.4E-14 112.7 1.6 100 389-494 125-228 (287)
98 cd02440 AdoMet_MTases S-adenos 98.8 3.1E-08 6.6E-13 86.0 10.2 98 392-490 1-103 (107)
99 PF05148 Methyltransf_8: Hypot 98.8 1.2E-08 2.7E-13 104.5 8.6 85 389-490 72-157 (219)
100 TIGR02081 metW methionine bios 98.8 2.7E-08 5.8E-13 101.1 10.9 86 390-483 14-104 (194)
101 PRK00312 pcm protein-L-isoaspa 98.8 6.1E-08 1.3E-12 99.7 13.4 106 374-491 67-175 (212)
102 PRK14966 unknown domain/N5-glu 98.8 1.5E-07 3.1E-12 106.3 16.6 101 390-491 252-381 (423)
103 TIGR00438 rrmJ cell division p 98.8 7.2E-08 1.6E-12 97.5 12.7 92 389-491 32-146 (188)
104 PF05219 DREV: DREV methyltran 98.8 3E-08 6.5E-13 104.7 9.8 124 359-492 64-189 (265)
105 PLN02232 ubiquinone biosynthes 98.7 3.4E-08 7.3E-13 97.8 9.1 80 413-493 1-83 (160)
106 TIGR03533 L3_gln_methyl protei 98.7 7.2E-08 1.6E-12 104.2 12.0 102 389-492 121-252 (284)
107 PRK09328 N5-glutamine S-adenos 98.7 3.4E-07 7.3E-12 97.3 16.9 101 389-490 108-237 (275)
108 PRK10901 16S rRNA methyltransf 98.7 1.5E-07 3.3E-12 107.2 14.6 107 388-495 243-376 (427)
109 PTZ00146 fibrillarin; Provisio 98.7 1.2E-07 2.6E-12 102.5 12.8 112 373-490 117-236 (293)
110 PRK00811 spermidine synthase; 98.7 2.5E-07 5.4E-12 100.0 14.5 102 388-490 75-190 (283)
111 TIGR00536 hemK_fam HemK family 98.7 2.1E-07 4.4E-12 100.5 13.9 99 391-491 116-244 (284)
112 PRK11805 N5-glutamine S-adenos 98.7 1.3E-07 2.8E-12 103.5 11.3 99 391-491 135-263 (307)
113 TIGR00563 rsmB ribosomal RNA s 98.6 2.4E-07 5.2E-12 105.5 13.6 107 388-495 237-372 (426)
114 PRK04457 spermidine synthase; 98.6 2.1E-07 4.5E-12 99.6 11.5 116 372-490 52-176 (262)
115 KOG3045 Predicted RNA methylas 98.6 1E-07 2.2E-12 99.9 8.4 85 388-490 179-263 (325)
116 COG4123 Predicted O-methyltran 98.6 4.3E-07 9.4E-12 96.0 13.1 102 389-491 44-170 (248)
117 PRK13943 protein-L-isoaspartat 98.6 3.8E-07 8.1E-12 100.4 13.2 106 373-490 68-179 (322)
118 PF03291 Pox_MCEL: mRNA cappin 98.6 2.9E-07 6.3E-12 101.6 11.5 103 389-492 62-187 (331)
119 PRK14901 16S rRNA methyltransf 98.6 4.2E-07 9E-12 103.9 13.1 107 388-495 251-388 (434)
120 KOG1975 mRNA cap methyltransfe 98.5 1.6E-07 3.4E-12 101.2 7.9 104 388-492 116-238 (389)
121 PRK14903 16S rRNA methyltransf 98.5 1.6E-07 3.6E-12 107.1 8.7 106 388-494 236-369 (431)
122 smart00650 rADc Ribosomal RNA 98.5 3.9E-07 8.4E-12 90.7 10.0 96 389-490 13-112 (169)
123 PRK13256 thiopurine S-methyltr 98.5 5.8E-07 1.3E-11 94.2 11.7 102 389-490 43-162 (226)
124 PRK14904 16S rRNA methyltransf 98.5 7.4E-07 1.6E-11 102.1 13.6 105 388-494 249-380 (445)
125 TIGR00417 speE spermidine synt 98.5 1.4E-06 3E-11 93.5 14.8 101 389-490 72-185 (270)
126 PF01135 PCMT: Protein-L-isoas 98.5 3.3E-07 7.2E-12 95.0 9.0 107 371-490 58-171 (209)
127 TIGR00446 nop2p NOL1/NOP2/sun 98.5 7.2E-07 1.6E-11 95.4 11.7 106 388-494 70-202 (264)
128 TIGR03704 PrmC_rel_meth putati 98.5 1.8E-06 4E-11 91.8 14.7 99 390-491 87-216 (251)
129 PF08241 Methyltransf_11: Meth 98.4 3.3E-08 7E-13 86.6 -0.2 91 648-743 1-95 (95)
130 PLN02366 spermidine synthase 98.4 3.7E-06 8E-11 92.1 15.6 103 388-491 90-206 (308)
131 PF02390 Methyltransf_4: Putat 98.4 9.7E-07 2.1E-11 90.5 10.1 99 391-491 19-133 (195)
132 COG2890 HemK Methylase of poly 98.4 2.6E-06 5.7E-11 92.1 13.2 97 392-491 113-238 (280)
133 PLN02781 Probable caffeoyl-CoA 98.4 2.9E-06 6.3E-11 89.3 12.0 99 389-492 68-179 (234)
134 PRK14902 16S rRNA methyltransf 98.4 3.4E-06 7.4E-11 96.6 13.4 104 388-493 249-381 (444)
135 PRK15128 23S rRNA m(5)C1962 me 98.4 3.1E-06 6.7E-11 95.7 12.7 111 389-500 220-348 (396)
136 COG0220 Predicted S-adenosylme 98.4 1.8E-06 3.9E-11 90.6 10.1 98 391-490 50-163 (227)
137 PF06080 DUF938: Protein of un 98.4 5.8E-06 1.3E-10 85.2 13.5 120 370-496 11-146 (204)
138 PHA03411 putative methyltransf 98.3 2.2E-06 4.7E-11 92.1 10.5 96 389-490 64-182 (279)
139 KOG2361 Predicted methyltransf 98.3 1.1E-06 2.3E-11 91.9 7.6 101 391-492 73-184 (264)
140 PRK01581 speE spermidine synth 98.3 2.7E-06 5.9E-11 94.5 11.1 103 388-491 149-268 (374)
141 COG2242 CobL Precorrin-6B meth 98.3 9.2E-06 2E-10 82.4 13.8 96 388-490 33-134 (187)
142 COG2518 Pcm Protein-L-isoaspar 98.3 3.6E-06 7.7E-11 86.9 10.9 105 373-490 60-168 (209)
143 PRK13168 rumA 23S rRNA m(5)U19 98.3 3.7E-06 8.1E-11 96.3 12.3 98 388-491 296-400 (443)
144 PF05891 Methyltransf_PK: AdoM 98.3 1.7E-06 3.7E-11 89.6 7.2 103 389-491 55-161 (218)
145 PHA03412 putative methyltransf 98.2 4.3E-06 9.4E-11 88.0 10.0 93 390-488 50-160 (241)
146 KOG2904 Predicted methyltransf 98.2 1.5E-05 3.4E-10 84.6 14.0 133 369-505 129-298 (328)
147 PRK11783 rlmL 23S rRNA m(2)G24 98.2 6.3E-06 1.4E-10 99.6 12.5 102 390-492 539-657 (702)
148 PRK03522 rumB 23S rRNA methylu 98.2 6.6E-06 1.4E-10 90.2 10.9 97 389-490 173-273 (315)
149 COG0500 SmtA SAM-dependent met 98.2 1.6E-05 3.5E-10 71.0 11.4 97 393-492 52-156 (257)
150 PRK10909 rsmD 16S rRNA m(2)G96 98.2 2.2E-05 4.7E-10 81.0 13.4 118 367-491 34-159 (199)
151 PRK03612 spermidine synthase; 98.2 8.2E-06 1.8E-10 95.4 11.4 104 388-492 296-416 (521)
152 PF00891 Methyltransf_2: O-met 98.1 8.9E-06 1.9E-10 85.3 8.5 99 388-496 99-204 (241)
153 COG2519 GCD14 tRNA(1-methylade 98.1 3.7E-05 8.1E-10 81.3 13.0 97 388-492 93-196 (256)
154 TIGR00478 tly hemolysin TlyA f 98.1 1.3E-05 2.7E-10 84.4 9.6 89 389-492 75-172 (228)
155 KOG2899 Predicted methyltransf 98.1 2.1E-05 4.5E-10 82.4 10.8 101 390-490 59-208 (288)
156 TIGR00479 rumA 23S rRNA (uraci 98.1 1.6E-05 3.5E-10 90.7 10.5 97 389-490 292-395 (431)
157 PRK10611 chemotaxis methyltran 98.0 1.7E-05 3.6E-10 86.1 9.6 123 364-490 94-261 (287)
158 PRK11727 23S rRNA mA1618 methy 98.0 9.8E-05 2.1E-09 81.4 15.0 95 368-462 89-198 (321)
159 PF05724 TPMT: Thiopurine S-me 98.0 1.2E-05 2.7E-10 83.9 7.4 102 388-489 36-153 (218)
160 PF13489 Methyltransf_23: Meth 98.0 1E-06 2.3E-11 85.0 -0.7 96 642-747 21-117 (161)
161 PLN02672 methionine S-methyltr 98.0 2.9E-05 6.4E-10 96.7 11.6 100 390-491 119-278 (1082)
162 PLN02476 O-methyltransferase 98.0 4.3E-05 9.3E-10 82.6 11.1 99 389-492 118-229 (278)
163 PRK01544 bifunctional N5-gluta 98.0 2.8E-05 6.2E-10 90.6 10.3 101 388-490 346-461 (506)
164 PF01739 CheR: CheR methyltran 97.9 2.1E-05 4.5E-10 81.0 7.4 101 389-490 31-174 (196)
165 PF01596 Methyltransf_3: O-met 97.9 3.8E-05 8.2E-10 79.6 9.3 100 389-493 45-157 (205)
166 TIGR02085 meth_trns_rumB 23S r 97.9 4.3E-05 9.4E-10 85.9 10.5 97 390-491 234-334 (374)
167 COG1041 Predicted DNA modifica 97.9 3.6E-05 7.8E-10 84.8 9.5 107 385-492 193-311 (347)
168 PRK14896 ksgA 16S ribosomal RN 97.9 7.6E-05 1.6E-09 79.7 11.8 83 372-462 16-100 (258)
169 PRK00274 ksgA 16S ribosomal RN 97.9 7.3E-05 1.6E-09 80.4 11.6 82 373-461 30-113 (272)
170 PF07942 N2227: N2227-like pro 97.9 8.9E-05 1.9E-09 79.7 11.3 145 374-521 41-239 (270)
171 COG4122 Predicted O-methyltran 97.9 9.2E-05 2E-09 77.4 10.8 111 369-491 46-166 (219)
172 PF10294 Methyltransf_16: Puta 97.8 6.7E-05 1.5E-09 75.5 9.3 102 388-492 44-157 (173)
173 KOG1499 Protein arginine N-met 97.8 3.8E-05 8.2E-10 84.4 7.9 97 389-488 60-164 (346)
174 KOG1269 SAM-dependent methyltr 97.8 2.7E-05 5.9E-10 87.0 6.8 100 389-490 110-214 (364)
175 TIGR00755 ksgA dimethyladenosi 97.8 0.00013 2.9E-09 77.5 11.7 81 373-461 17-102 (253)
176 PRK00107 gidB 16S rRNA methylt 97.8 4.2E-05 9E-10 78.1 7.3 113 645-767 47-167 (187)
177 PTZ00338 dimethyladenosine tra 97.8 0.00015 3.3E-09 79.1 11.8 97 372-477 23-122 (294)
178 PLN02823 spermine synthase 97.8 0.00018 3.8E-09 80.0 12.1 102 389-491 103-220 (336)
179 PF08704 GCD14: tRNA methyltra 97.7 0.00017 3.8E-09 76.7 10.9 107 375-492 30-147 (247)
180 KOG3987 Uncharacterized conser 97.7 1.7E-05 3.8E-10 81.1 3.2 121 359-491 84-207 (288)
181 COG2263 Predicted RNA methylas 97.7 0.00016 3.5E-09 73.5 9.9 69 389-461 45-116 (198)
182 PLN02244 tocopherol O-methyltr 97.7 1.5E-05 3.3E-10 88.4 1.8 94 643-744 118-222 (340)
183 COG0421 SpeE Spermidine syntha 97.7 0.00041 8.9E-09 75.2 12.8 111 376-490 64-189 (282)
184 PRK15001 SAM-dependent 23S rib 97.7 0.0011 2.4E-08 74.8 16.5 92 392-490 47-141 (378)
185 PF05185 PRMT5: PRMT5 arginine 97.7 0.00011 2.4E-09 84.5 8.6 97 390-488 187-294 (448)
186 smart00828 PKS_MT Methyltransf 97.7 2.5E-05 5.4E-10 80.6 2.9 94 645-745 1-104 (224)
187 PRK11036 putative S-adenosyl-L 97.6 1.2E-05 2.7E-10 85.1 0.5 94 645-744 46-148 (255)
188 PRK09489 rsmC 16S ribosomal RN 97.6 0.00052 1.1E-08 76.5 13.2 96 646-744 199-302 (342)
189 KOG3191 Predicted N6-DNA-methy 97.6 0.00064 1.4E-08 68.8 12.3 99 390-490 44-167 (209)
190 PLN02233 ubiquinone biosynthes 97.6 2.9E-05 6.3E-10 83.0 2.4 96 645-745 75-182 (261)
191 PLN02589 caffeoyl-CoA O-methyl 97.6 0.00027 5.9E-09 75.3 9.4 97 390-491 80-190 (247)
192 PF01170 UPF0020: Putative RNA 97.6 0.00033 7.1E-09 71.0 9.5 99 388-490 27-150 (179)
193 TIGR00477 tehB tellurite resis 97.6 7.1E-05 1.5E-09 76.5 4.6 93 645-743 32-131 (195)
194 COG2521 Predicted archaeal met 97.6 0.00014 3E-09 76.0 6.5 131 388-521 133-274 (287)
195 PRK10258 biotin biosynthesis p 97.5 5.2E-05 1.1E-09 79.9 3.0 95 643-744 42-139 (251)
196 PF12147 Methyltransf_20: Puta 97.5 0.0012 2.6E-08 71.3 13.2 119 375-496 121-254 (311)
197 PF12847 Methyltransf_18: Meth 97.5 2.4E-05 5.3E-10 71.4 -0.2 97 646-745 4-111 (112)
198 KOG1331 Predicted methyltransf 97.5 6.7E-05 1.4E-09 80.4 3.1 100 389-495 45-147 (293)
199 PRK04338 N(2),N(2)-dimethylgua 97.5 0.00036 7.7E-09 78.9 9.0 97 390-492 58-159 (382)
200 TIGR00095 RNA methyltransferas 97.5 0.0015 3.2E-08 66.8 12.7 98 390-490 50-158 (189)
201 PRK00536 speE spermidine synth 97.4 0.0019 4.2E-08 69.4 13.8 104 379-492 63-172 (262)
202 TIGR00138 gidB 16S rRNA methyl 97.4 8.9E-05 1.9E-09 75.2 3.3 112 644-766 43-164 (181)
203 PRK15068 tRNA mo(5)U34 methylt 97.4 6E-05 1.3E-09 83.1 2.3 95 645-744 124-225 (322)
204 PRK11207 tellurite resistance 97.4 6.3E-05 1.4E-09 77.0 2.2 93 645-743 32-132 (197)
205 PTZ00098 phosphoethanolamine N 97.4 5.6E-05 1.2E-09 80.9 1.9 98 644-746 53-157 (263)
206 PRK04148 hypothetical protein; 97.4 0.0011 2.4E-08 64.4 10.6 104 375-496 6-113 (134)
207 KOG1500 Protein arginine N-met 97.4 0.001 2.2E-08 72.5 10.9 97 389-488 177-279 (517)
208 PF02527 GidB: rRNA small subu 97.4 0.0011 2.4E-08 67.6 10.7 92 392-490 51-147 (184)
209 PF01564 Spermine_synth: Sperm 97.4 0.00083 1.8E-08 71.5 9.9 118 371-491 60-191 (246)
210 PRK08287 cobalt-precorrin-6Y C 97.4 0.00013 2.8E-09 73.7 3.5 112 644-764 32-151 (187)
211 PRK14103 trans-aconitate 2-met 97.4 8.6E-05 1.9E-09 78.7 2.2 95 643-744 29-125 (255)
212 TIGR00537 hemK_rel_arch HemK-r 97.3 0.00036 7.7E-09 70.0 6.5 117 645-767 21-163 (179)
213 TIGR03439 methyl_EasF probable 97.3 0.0025 5.4E-08 70.4 13.6 102 390-491 77-197 (319)
214 PF02475 Met_10: Met-10+ like- 97.3 0.0011 2.5E-08 68.5 10.0 112 364-488 82-199 (200)
215 PF02353 CMAS: Mycolic acid cy 97.3 4.7E-05 1E-09 82.1 -0.1 97 645-744 64-165 (273)
216 PRK00517 prmA ribosomal protei 97.3 0.00028 6E-09 74.9 5.6 127 644-780 120-249 (250)
217 COG1352 CheR Methylase of chem 97.3 0.00088 1.9E-08 72.2 9.4 128 362-490 67-240 (268)
218 TIGR02752 MenG_heptapren 2-hep 97.3 8.9E-05 1.9E-09 76.9 1.6 95 645-745 47-151 (231)
219 TIGR00406 prmA ribosomal prote 97.3 0.00023 4.9E-09 77.3 4.5 113 645-766 161-280 (288)
220 PRK00121 trmB tRNA (guanine-N( 97.3 0.00015 3.2E-09 74.6 2.8 121 643-766 40-178 (202)
221 PRK08317 hypothetical protein; 97.2 0.00013 2.7E-09 74.9 2.0 98 643-745 19-124 (241)
222 KOG1661 Protein-L-isoaspartate 97.2 0.0012 2.6E-08 68.3 8.8 96 388-490 81-192 (237)
223 PRK12335 tellurite resistance 97.2 0.00013 2.8E-09 79.0 1.9 93 645-743 122-221 (287)
224 COG3963 Phospholipid N-methylt 97.2 0.0023 4.9E-08 64.1 10.1 97 388-489 47-154 (194)
225 PRK11933 yebU rRNA (cytosine-C 97.2 0.0026 5.5E-08 73.8 12.0 106 388-494 112-245 (470)
226 PF08242 Methyltransf_12: Meth 97.2 0.00026 5.6E-09 63.7 3.1 89 648-741 1-99 (99)
227 TIGR02072 BioC biotin biosynth 97.2 0.00014 3.1E-09 74.7 1.6 95 645-744 36-134 (240)
228 PRK05031 tRNA (uracil-5-)-meth 97.2 0.0011 2.5E-08 74.2 8.7 95 391-492 208-321 (362)
229 TIGR00452 methyltransferase, p 97.2 0.00019 4.1E-09 79.1 2.3 97 644-744 122-224 (314)
230 PF11968 DUF3321: Putative met 97.1 0.0019 4.1E-08 67.3 9.3 87 390-492 52-150 (219)
231 PF01728 FtsJ: FtsJ-like methy 97.1 0.0022 4.7E-08 64.4 9.6 110 374-496 9-144 (181)
232 KOG3178 Hydroxyindole-O-methyl 97.1 0.0032 7E-08 69.6 11.5 99 389-495 177-279 (342)
233 PRK11705 cyclopropane fatty ac 97.1 0.00018 3.8E-09 81.3 1.8 94 645-744 169-266 (383)
234 PLN02396 hexaprenyldihydroxybe 97.1 0.0002 4.3E-09 79.1 1.8 94 646-745 134-235 (322)
235 PF02384 N6_Mtase: N-6 DNA Met 97.1 0.0015 3.2E-08 71.2 8.4 116 372-492 33-184 (311)
236 COG0030 KsgA Dimethyladenosine 97.1 0.0052 1.1E-07 65.9 12.1 101 374-483 19-122 (259)
237 TIGR02143 trmA_only tRNA (urac 97.1 0.0017 3.7E-08 72.6 8.9 93 391-490 199-310 (353)
238 COG1092 Predicted SAM-dependen 97.0 0.0069 1.5E-07 68.6 13.0 113 390-503 218-348 (393)
239 PRK01683 trans-aconitate 2-met 97.0 0.00033 7.1E-09 74.1 2.1 96 642-744 30-129 (258)
240 PRK11188 rrmJ 23S rRNA methylt 97.0 0.00075 1.6E-08 70.0 4.7 126 645-780 53-206 (209)
241 PRK11088 rrmA 23S rRNA methylt 97.0 0.00024 5.1E-09 76.3 0.9 90 644-744 86-180 (272)
242 PTZ00146 fibrillarin; Provisio 97.0 0.00029 6.2E-09 76.6 1.4 95 645-744 134-236 (293)
243 TIGR00438 rrmJ cell division p 96.9 0.00087 1.9E-08 67.8 4.7 123 645-779 34-186 (188)
244 KOG1663 O-methyltransferase [S 96.9 0.0094 2E-07 62.6 11.6 97 390-491 74-183 (237)
245 TIGR00740 methyltransferase, p 96.8 0.00041 8.9E-09 72.8 1.2 97 644-746 54-162 (239)
246 PF01209 Ubie_methyltran: ubiE 96.8 0.00035 7.7E-09 73.7 0.5 96 646-744 50-152 (233)
247 PF03602 Cons_hypoth95: Conser 96.8 0.0037 7.9E-08 63.8 7.7 118 368-491 23-153 (183)
248 COG2265 TrmA SAM-dependent met 96.8 0.0059 1.3E-07 70.1 10.3 122 364-490 268-395 (432)
249 KOG3420 Predicted RNA methylas 96.8 0.0023 5E-08 62.7 5.8 86 371-461 34-122 (185)
250 PRK11760 putative 23S rRNA C24 96.8 0.029 6.2E-07 62.5 15.0 109 388-509 210-324 (357)
251 PRK11873 arsM arsenite S-adeno 96.8 0.00055 1.2E-08 73.1 1.6 92 645-745 79-183 (272)
252 TIGR01934 MenG_MenH_UbiE ubiqu 96.8 0.00079 1.7E-08 68.7 2.6 97 644-745 40-143 (223)
253 KOG2352 Predicted spermine/spe 96.8 0.0059 1.3E-07 70.0 9.8 97 392-490 51-160 (482)
254 PRK14968 putative methyltransf 96.8 0.0017 3.8E-08 64.6 5.0 118 644-766 24-170 (188)
255 PRK00377 cbiT cobalt-precorrin 96.7 0.00093 2E-08 68.3 3.0 111 646-766 43-167 (198)
256 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.7 0.0025 5.3E-08 68.4 6.1 104 389-492 56-200 (256)
257 COG2226 UbiE Methylase involve 96.7 0.00065 1.4E-08 72.0 1.8 96 645-744 53-155 (238)
258 COG0293 FtsJ 23S rRNA methylas 96.7 0.01 2.2E-07 61.6 10.4 114 367-494 26-162 (205)
259 PF10672 Methyltrans_SAM: S-ad 96.7 0.011 2.5E-07 64.3 11.3 104 390-494 124-241 (286)
260 PRK09328 N5-glutamine S-adenos 96.7 0.0016 3.5E-08 69.3 4.7 132 645-780 110-275 (275)
261 PF09243 Rsm22: Mitochondrial 96.7 0.012 2.6E-07 63.7 11.3 107 375-491 23-139 (274)
262 PRK15451 tRNA cmo(5)U34 methyl 96.6 0.00082 1.8E-08 71.2 1.8 97 645-746 58-165 (247)
263 PF05401 NodS: Nodulation prot 96.6 0.00074 1.6E-08 69.4 1.4 100 639-744 39-145 (201)
264 COG3897 Predicted methyltransf 96.6 0.0097 2.1E-07 61.1 9.2 107 389-501 79-188 (218)
265 COG0742 N6-adenine-specific me 96.6 0.028 6E-07 57.6 12.5 132 354-490 11-153 (187)
266 TIGR03534 RF_mod_PrmC protein- 96.6 0.0014 3.1E-08 68.5 3.3 117 645-765 89-237 (251)
267 TIGR00091 tRNA (guanine-N(7)-) 96.6 0.0013 2.9E-08 67.1 2.8 118 644-764 17-153 (194)
268 TIGR02987 met_A_Alw26 type II 96.6 0.011 2.4E-07 69.5 10.7 77 389-465 31-124 (524)
269 PRK05134 bifunctional 3-demeth 96.6 0.00096 2.1E-08 69.4 1.7 94 646-745 51-151 (233)
270 TIGR01983 UbiG ubiquinone bios 96.6 0.0011 2.5E-08 68.2 2.1 95 645-745 47-149 (224)
271 PF08123 DOT1: Histone methyla 96.5 0.0088 1.9E-07 62.2 8.6 118 366-489 23-156 (205)
272 cd02440 AdoMet_MTases S-adenos 96.5 0.0017 3.7E-08 56.0 2.7 95 646-744 1-103 (107)
273 PRK05785 hypothetical protein; 96.5 0.0012 2.7E-08 69.2 1.9 87 645-739 53-141 (226)
274 COG0357 GidB Predicted S-adeno 96.5 0.035 7.6E-07 58.1 12.6 117 367-489 44-166 (215)
275 PF01728 FtsJ: FtsJ-like methy 96.5 0.0015 3.2E-08 65.6 2.2 139 640-780 20-180 (181)
276 PRK11783 rlmL 23S rRNA m(2)G24 96.4 0.018 4E-07 70.1 11.6 121 645-767 540-678 (702)
277 PF13679 Methyltransf_32: Meth 96.3 0.037 7.9E-07 53.8 10.7 102 388-498 24-138 (141)
278 PF13847 Methyltransf_31: Meth 96.3 0.0014 3E-08 63.8 0.7 97 645-747 5-112 (152)
279 PRK04266 fibrillarin; Provisio 96.3 0.0015 3.2E-08 68.8 0.9 89 646-743 75-174 (226)
280 PRK06922 hypothetical protein; 96.3 0.0014 3E-08 78.0 0.8 103 641-746 416-538 (677)
281 PRK14967 putative methyltransf 96.2 0.0036 7.8E-08 65.2 3.7 118 645-766 38-181 (223)
282 smart00138 MeTrc Methyltransfe 96.2 0.0017 3.7E-08 69.7 1.2 52 693-746 192-243 (264)
283 KOG0820 Ribosomal RNA adenine 96.2 0.023 5E-07 61.0 9.5 69 388-461 57-131 (315)
284 PRK00050 16S rRNA m(4)C1402 me 96.2 0.011 2.4E-07 64.7 7.2 72 389-462 19-99 (296)
285 COG0144 Sun tRNA and rRNA cyto 96.2 0.034 7.3E-07 62.4 11.1 109 387-496 154-293 (355)
286 PF01269 Fibrillarin: Fibrilla 96.1 0.054 1.2E-06 56.9 11.7 113 372-491 57-178 (229)
287 TIGR00308 TRM1 tRNA(guanine-26 96.1 0.017 3.8E-07 65.2 8.6 96 391-492 46-148 (374)
288 PRK13944 protein-L-isoaspartat 96.1 0.0014 3.1E-08 67.4 -0.0 90 645-744 74-172 (205)
289 TIGR00536 hemK_fam HemK family 96.1 0.0076 1.7E-07 65.3 5.5 132 645-780 116-282 (284)
290 COG2520 Predicted methyltransf 96.1 0.032 7E-07 62.1 10.5 113 366-490 171-288 (341)
291 TIGR02716 C20_methyl_CrtF C-20 96.1 0.0024 5.2E-08 69.6 1.4 102 640-745 146-254 (306)
292 COG4262 Predicted spermidine s 96.0 0.035 7.5E-07 61.7 10.1 173 359-539 260-453 (508)
293 PLN02490 MPBQ/MSBQ methyltrans 96.0 0.0025 5.4E-08 71.0 1.4 115 645-765 115-252 (340)
294 TIGR03704 PrmC_rel_meth putati 96.0 0.0042 9.1E-08 66.3 3.0 125 645-771 88-242 (251)
295 PRK14121 tRNA (guanine-N(7)-)- 96.0 0.0043 9.3E-08 70.2 3.1 115 645-764 124-256 (390)
296 PRK00216 ubiE ubiquinone/menaq 96.0 0.0037 8E-08 64.5 2.3 95 645-745 53-158 (239)
297 KOG1709 Guanidinoacetate methy 96.0 0.039 8.4E-07 57.6 9.4 111 372-490 89-205 (271)
298 COG0116 Predicted N6-adenine-s 95.9 0.043 9.2E-07 61.8 10.5 100 389-492 191-345 (381)
299 COG4976 Predicted methyltransf 95.9 0.0021 4.6E-08 67.3 -0.1 100 639-744 121-224 (287)
300 PF03848 TehB: Tellurite resis 95.9 0.0025 5.4E-08 65.6 0.4 96 645-743 32-131 (192)
301 PF05958 tRNA_U5-meth_tr: tRNA 95.8 0.014 3.1E-07 65.3 6.3 53 391-444 198-253 (352)
302 PRK11805 N5-glutamine S-adenos 95.8 0.0075 1.6E-07 66.3 4.0 128 645-780 135-296 (307)
303 TIGR00080 pimt protein-L-isoas 95.8 0.0024 5.2E-08 66.1 -0.2 86 645-744 79-176 (215)
304 PRK07402 precorrin-6B methylas 95.8 0.01 2.2E-07 60.4 4.4 107 645-760 42-158 (196)
305 KOG2915 tRNA(1-methyladenosine 95.8 0.22 4.8E-06 53.7 14.3 106 374-490 94-208 (314)
306 TIGR03533 L3_gln_methyl protei 95.7 0.0089 1.9E-07 64.9 4.1 115 645-764 123-269 (284)
307 COG2230 Cfa Cyclopropane fatty 95.7 0.0045 9.7E-08 67.1 1.4 94 646-744 75-175 (283)
308 PRK14966 unknown domain/N5-glu 95.7 0.015 3.2E-07 66.5 5.5 134 646-781 254-419 (423)
309 KOG2798 Putative trehalase [Ca 95.6 0.059 1.3E-06 59.0 9.5 122 372-496 133-301 (369)
310 TIGR02469 CbiT precorrin-6Y C5 95.6 0.0057 1.2E-07 56.3 1.6 90 645-744 21-121 (124)
311 PRK13942 protein-L-isoaspartat 95.5 0.0039 8.4E-08 64.7 0.3 86 645-744 78-175 (212)
312 PRK06202 hypothetical protein; 95.5 0.0069 1.5E-07 63.3 2.2 100 643-745 60-166 (232)
313 PF09445 Methyltransf_15: RNA 95.5 0.032 6.9E-07 56.1 6.6 69 391-461 1-77 (163)
314 KOG3010 Methyltransferase [Gen 95.3 0.0063 1.4E-07 64.2 1.1 114 642-763 32-158 (261)
315 PF06325 PrmA: Ribosomal prote 95.3 0.01 2.2E-07 65.0 2.7 128 645-781 163-295 (295)
316 KOG3045 Predicted RNA methylas 95.3 0.034 7.3E-07 59.4 6.4 105 646-768 183-290 (325)
317 TIGR02081 metW methionine bios 95.3 0.0066 1.4E-07 61.7 1.1 87 646-737 16-104 (194)
318 PRK07580 Mg-protoporphyrin IX 95.2 0.014 3E-07 60.4 3.2 98 644-745 64-166 (230)
319 TIGR03587 Pse_Me-ase pseudamin 95.1 0.01 2.3E-07 61.3 1.9 95 643-744 43-141 (204)
320 PF05175 MTS: Methyltransferas 95.1 0.018 3.9E-07 57.6 3.4 112 643-758 31-155 (170)
321 TIGR02021 BchM-ChlM magnesium 95.0 0.015 3.3E-07 60.1 2.9 100 643-746 55-159 (219)
322 PF04672 Methyltransf_19: S-ad 95.0 0.089 1.9E-06 56.8 8.6 108 389-500 68-198 (267)
323 PF07021 MetW: Methionine bios 95.0 0.011 2.4E-07 60.7 1.6 112 646-765 16-163 (193)
324 PRK04457 spermidine synthase; 95.0 0.037 8.1E-07 59.5 5.7 136 642-780 65-216 (262)
325 PF00398 RrnaAD: Ribosomal RNA 95.0 0.11 2.5E-06 55.6 9.4 103 371-483 16-123 (262)
326 COG4627 Uncharacterized protei 94.8 0.0068 1.5E-07 60.1 -0.5 48 444-493 38-88 (185)
327 PF05148 Methyltransf_8: Hypot 94.7 0.069 1.5E-06 55.7 6.5 120 645-782 74-199 (219)
328 COG2813 RsmC 16S RNA G1207 met 94.7 0.53 1.1E-05 51.7 13.5 124 646-780 161-299 (300)
329 COG5459 Predicted rRNA methyla 94.6 0.13 2.7E-06 57.2 8.7 114 374-492 102-226 (484)
330 TIGR03438 probable methyltrans 94.6 0.014 3E-07 63.9 1.4 98 645-744 65-176 (301)
331 PLN02668 indole-3-acetate carb 94.5 0.13 2.8E-06 58.4 8.7 20 448-468 157-176 (386)
332 COG0500 SmtA SAM-dependent met 94.5 0.052 1.1E-06 48.2 4.5 94 647-747 52-157 (257)
333 COG1189 Predicted rRNA methyla 94.5 0.39 8.5E-06 51.0 11.5 95 388-492 78-179 (245)
334 PRK00312 pcm protein-L-isoaspa 94.4 0.025 5.4E-07 58.3 2.6 87 645-744 80-174 (212)
335 COG2890 HemK Methylase of poly 94.4 0.044 9.6E-07 59.5 4.5 130 646-780 113-276 (280)
336 PF13649 Methyltransf_25: Meth 94.3 0.0025 5.4E-08 57.7 -4.4 92 647-739 1-101 (101)
337 PF00891 Methyltransf_2: O-met 94.3 0.0089 1.9E-07 62.7 -1.1 96 638-744 95-198 (241)
338 KOG3201 Uncharacterized conser 94.1 0.045 9.7E-07 54.8 3.5 104 390-496 30-145 (201)
339 PF01189 Nol1_Nop2_Fmu: NOL1/N 94.0 0.1 2.2E-06 56.8 6.5 106 388-494 84-222 (283)
340 PF13578 Methyltransf_24: Meth 93.9 0.019 4.1E-07 52.4 0.5 93 394-490 1-104 (106)
341 KOG2187 tRNA uracil-5-methyltr 93.9 0.056 1.2E-06 62.6 4.2 59 388-447 382-443 (534)
342 TIGR00478 tly hemolysin TlyA f 93.6 0.065 1.4E-06 56.7 3.8 108 644-766 76-214 (228)
343 COG4798 Predicted methyltransf 93.6 0.26 5.6E-06 50.9 7.8 102 388-492 47-167 (238)
344 PF02390 Methyltransf_4: Putat 93.5 0.025 5.4E-07 58.2 0.6 118 646-765 20-156 (195)
345 PF03492 Methyltransf_7: SAM d 93.4 0.26 5.6E-06 55.0 8.4 80 388-468 15-121 (334)
346 COG2264 PrmA Ribosomal protein 93.4 0.12 2.6E-06 56.7 5.6 127 643-780 162-298 (300)
347 TIGR03840 TMPT_Se_Te thiopurin 93.1 0.043 9.4E-07 57.3 1.6 29 645-673 36-66 (213)
348 PF03059 NAS: Nicotianamine sy 93.1 0.75 1.6E-05 50.1 11.1 101 390-491 121-230 (276)
349 COG1064 AdhP Zn-dependent alco 92.8 0.46 9.9E-06 53.1 9.0 93 388-493 165-261 (339)
350 PF05971 Methyltransf_10: Prot 92.8 0.49 1.1E-05 52.0 9.1 95 368-462 80-186 (299)
351 PF06962 rRNA_methylase: Putat 92.7 0.46 1E-05 46.7 7.9 86 411-496 1-97 (140)
352 TIGR01444 fkbM_fam methyltrans 92.6 0.24 5.3E-06 47.2 5.9 39 392-430 1-43 (143)
353 TIGR01177 conserved hypothetic 92.4 0.077 1.7E-06 58.7 2.4 114 643-762 182-309 (329)
354 COG1889 NOP1 Fibrillarin-like 92.3 1.3 2.8E-05 46.2 10.8 113 371-490 59-179 (231)
355 PF08003 Methyltransf_9: Prote 92.1 0.12 2.6E-06 56.7 3.3 97 643-744 115-218 (315)
356 PLN02781 Probable caffeoyl-CoA 91.9 0.16 3.4E-06 53.8 4.0 132 642-781 67-233 (234)
357 PF13659 Methyltransf_26: Meth 91.9 0.018 3.9E-07 52.9 -2.8 94 646-743 3-113 (117)
358 COG2227 UbiG 2-polyprenyl-3-me 91.8 0.079 1.7E-06 56.2 1.6 93 646-744 62-160 (243)
359 COG4076 Predicted RNA methylas 91.8 0.19 4.2E-06 51.5 4.2 90 390-488 33-132 (252)
360 TIGR00563 rsmB ribosomal RNA s 91.8 0.14 3E-06 58.8 3.7 95 645-744 240-367 (426)
361 PF01861 DUF43: Protein of unk 91.6 3 6.5E-05 44.6 13.0 98 389-490 44-148 (243)
362 PF04816 DUF633: Family of unk 91.6 0.95 2.1E-05 47.2 9.2 92 393-490 1-100 (205)
363 PF05219 DREV: DREV methyltran 91.4 0.12 2.5E-06 55.6 2.3 90 643-744 94-187 (265)
364 KOG1122 tRNA and rRNA cytosine 91.2 1.7 3.6E-05 49.7 11.2 108 387-496 239-376 (460)
365 COG4123 Predicted O-methyltran 91.0 0.26 5.5E-06 52.8 4.4 122 643-766 44-191 (248)
366 KOG3115 Methyltransferase-like 90.8 0.28 6.1E-06 50.9 4.3 24 725-748 163-186 (249)
367 KOG1540 Ubiquinone biosynthesi 90.5 0.21 4.6E-06 53.5 3.3 98 645-747 102-216 (296)
368 PLN02232 ubiquinone biosynthes 90.5 0.22 4.9E-06 49.3 3.3 48 696-746 35-82 (160)
369 PRK14902 16S rRNA methyltransf 90.4 0.15 3.2E-06 58.9 2.1 97 645-744 252-378 (444)
370 TIGR00417 speE spermidine synt 90.2 0.13 2.8E-06 55.4 1.4 100 642-744 71-185 (270)
371 PRK13255 thiopurine S-methyltr 90.0 0.15 3.2E-06 53.5 1.6 94 646-743 40-153 (218)
372 PRK14901 16S rRNA methyltransf 89.8 0.55 1.2E-05 54.1 6.2 39 725-763 364-407 (434)
373 PF07091 FmrO: Ribosomal RNA m 89.8 1.1 2.5E-05 47.9 8.0 83 371-461 93-179 (251)
374 KOG0822 Protein kinase inhibit 89.6 0.79 1.7E-05 53.5 7.0 113 375-488 354-475 (649)
375 PRK10901 16S rRNA methyltransf 89.5 0.31 6.8E-06 56.0 3.9 97 645-744 246-371 (427)
376 PRK13943 protein-L-isoaspartat 89.5 0.13 2.8E-06 57.1 0.8 88 645-744 82-179 (322)
377 COG1565 Uncharacterized conser 89.0 0.66 1.4E-05 52.1 5.8 69 350-422 42-122 (370)
378 PRK00811 spermidine synthase; 88.8 0.18 3.9E-06 54.9 1.1 100 642-744 75-190 (283)
379 KOG3115 Methyltransferase-like 88.5 1.2 2.6E-05 46.5 6.7 30 390-419 61-94 (249)
380 PRK01581 speE spermidine synth 88.3 0.21 4.6E-06 56.3 1.3 140 642-783 149-316 (374)
381 PRK14904 16S rRNA methyltransf 88.2 0.45 9.8E-06 55.0 4.0 95 645-744 252-376 (445)
382 KOG2198 tRNA cytosine-5-methyl 88.2 4.3 9.2E-05 45.9 11.3 120 376-496 141-301 (375)
383 PLN02366 spermidine synthase 87.8 0.25 5.4E-06 54.6 1.5 101 642-744 90-205 (308)
384 TIGR00446 nop2p NOL1/NOP2/sun 87.7 0.54 1.2E-05 50.5 4.0 95 646-744 74-198 (264)
385 COG0220 Predicted S-adenosylme 87.4 0.4 8.6E-06 50.8 2.7 111 645-757 50-178 (227)
386 PF06080 DUF938: Protein of un 87.2 0.74 1.6E-05 48.0 4.5 132 646-780 28-204 (204)
387 KOG4589 Cell division protein 87.2 1.4 3E-05 45.5 6.2 89 388-491 68-184 (232)
388 PRK14903 16S rRNA methyltransf 86.8 0.45 9.7E-06 54.9 2.9 96 645-744 239-365 (431)
389 PLN03075 nicotianamine synthas 86.8 0.44 9.6E-06 52.3 2.7 137 643-782 123-276 (296)
390 PF10294 Methyltransf_16: Puta 86.2 0.54 1.2E-05 47.4 2.7 97 642-744 44-155 (173)
391 COG5271 MDN1 AAA ATPase contai 86.0 0.93 2E-05 59.0 5.0 22 618-640 4376-4400(4600)
392 COG3129 Predicted SAM-dependen 85.5 1.9 4.1E-05 45.8 6.4 111 356-467 42-166 (292)
393 PF03269 DUF268: Caenorhabditi 85.4 0.63 1.4E-05 46.8 2.7 45 451-497 61-117 (177)
394 COG0286 HsdM Type I restrictio 84.9 11 0.00023 44.6 12.9 118 371-493 172-328 (489)
395 cd08254 hydroxyacyl_CoA_DH 6-h 84.9 3.9 8.4E-05 44.1 8.8 91 388-490 164-262 (338)
396 PLN02585 magnesium protoporphy 84.7 0.81 1.8E-05 50.7 3.5 93 645-742 146-247 (315)
397 KOG1596 Fibrillarin and relate 84.6 2.9 6.2E-05 44.7 7.2 109 375-491 143-261 (317)
398 PF06859 Bin3: Bicoid-interact 84.5 0.51 1.1E-05 44.5 1.5 37 453-490 1-43 (110)
399 PRK09880 L-idonate 5-dehydroge 84.4 4.6 0.0001 44.4 9.3 91 389-491 169-266 (343)
400 PRK15128 23S rRNA m(5)C1962 me 83.5 0.81 1.8E-05 52.3 2.9 121 645-767 222-367 (396)
401 PRK03612 spermidine synthase; 83.0 1.4 3.1E-05 52.1 4.8 121 642-764 296-439 (521)
402 cd08283 FDH_like_1 Glutathione 82.7 5.8 0.00013 44.6 9.4 97 388-491 183-306 (386)
403 COG4106 Tam Trans-aconitate me 82.3 1.5 3.3E-05 46.2 4.1 137 639-786 26-192 (257)
404 KOG1541 Predicted protein carb 82.0 1.8 3.8E-05 45.8 4.4 118 642-762 49-177 (270)
405 COG4301 Uncharacterized conser 81.7 10 0.00023 40.9 10.0 102 389-492 78-194 (321)
406 KOG1271 Methyltransferases [Ge 81.7 1.2 2.6E-05 45.8 3.0 109 646-756 70-192 (227)
407 COG1063 Tdh Threonine dehydrog 81.5 2.5 5.4E-05 47.3 5.8 94 390-496 169-274 (350)
408 COG2384 Predicted SAM-dependen 80.5 22 0.00047 37.8 11.8 108 374-490 7-119 (226)
409 PF04989 CmcI: Cephalosporin h 80.2 7.9 0.00017 40.6 8.5 99 389-490 32-146 (206)
410 TIGR00006 S-adenosyl-methyltra 79.9 6.6 0.00014 43.5 8.3 40 388-427 19-62 (305)
411 PRK11524 putative methyltransf 79.4 1.9 4.1E-05 46.9 3.9 43 448-490 22-79 (284)
412 PHA03412 putative methyltransf 78.6 1.1 2.3E-05 48.0 1.6 93 645-743 51-160 (241)
413 KOG2730 Methylase [General fun 78.5 2.9 6.3E-05 44.2 4.6 71 390-461 95-173 (263)
414 PF10354 DUF2431: Domain of un 78.4 13 0.00028 37.6 9.1 99 395-494 2-128 (166)
415 PHA03411 putative methyltransf 78.3 1.2 2.6E-05 48.5 1.9 96 645-744 66-182 (279)
416 KOG2793 Putative N2,N2-dimethy 78.1 11 0.00024 40.7 9.0 100 390-490 87-198 (248)
417 PRK10742 putative methyltransf 77.9 9.9 0.00021 41.0 8.6 70 392-461 91-172 (250)
418 PLN02476 O-methyltransferase 77.9 1.9 4.2E-05 47.0 3.3 134 640-781 115-278 (278)
419 PRK09424 pntA NAD(P) transhydr 77.2 13 0.00028 44.1 10.0 99 388-492 163-286 (509)
420 KOG4300 Predicted methyltransf 76.0 2 4.3E-05 45.1 2.6 95 646-747 79-184 (252)
421 PF07757 AdoMet_MTase: Predict 73.7 4.1 9E-05 38.5 3.8 30 389-418 58-87 (112)
422 KOG2920 Predicted methyltransf 73.6 0.97 2.1E-05 49.2 -0.3 114 370-490 98-233 (282)
423 PF12147 Methyltransf_20: Puta 73.4 1.6 3.5E-05 47.8 1.3 121 647-767 139-277 (311)
424 KOG1562 Spermidine synthase [A 73.1 7.6 0.00017 42.8 6.2 100 389-490 121-235 (337)
425 TIGR02822 adh_fam_2 zinc-bindi 72.3 22 0.00049 39.0 10.0 88 388-492 164-255 (329)
426 KOG2904 Predicted methyltransf 72.1 5.2 0.00011 43.7 4.6 135 646-780 151-327 (328)
427 COG4627 Uncharacterized protei 71.5 1.3 2.8E-05 44.4 0.0 48 694-744 38-85 (185)
428 cd08245 CAD Cinnamyl alcohol d 71.2 22 0.00047 38.5 9.4 92 388-491 161-256 (330)
429 TIGR01202 bchC 2-desacetyl-2-h 71.2 14 0.00031 40.1 8.0 83 390-492 145-232 (308)
430 PF07942 N2227: N2227-like pro 71.2 4 8.8E-05 44.4 3.7 73 691-767 149-240 (270)
431 cd08230 glucose_DH Glucose deh 70.8 14 0.00031 40.7 8.1 93 389-492 172-270 (355)
432 PRK13699 putative methylase; P 70.7 7.7 0.00017 41.0 5.6 20 724-743 51-70 (227)
433 COG2242 CobL Precorrin-6B meth 70.6 6.4 0.00014 40.6 4.8 44 722-765 112-157 (187)
434 smart00650 rADc Ribosomal RNA 70.1 2.6 5.6E-05 41.9 1.8 95 643-745 13-113 (169)
435 KOG1099 SAM-dependent methyltr 69.8 4.5 9.8E-05 43.1 3.5 90 389-490 41-162 (294)
436 KOG4058 Uncharacterized conser 69.4 45 0.00098 33.5 10.0 100 388-494 71-175 (199)
437 PF03291 Pox_MCEL: mRNA cappin 68.9 2 4.3E-05 48.0 0.8 135 618-755 37-198 (331)
438 KOG0024 Sorbitol dehydrogenase 68.9 26 0.00057 39.3 9.2 92 388-491 168-273 (354)
439 PRK01747 mnmC bifunctional tRN 68.7 11 0.00023 46.0 7.0 36 452-488 165-203 (662)
440 PF00107 ADH_zinc_N: Zinc-bind 68.6 8.9 0.00019 35.6 5.0 83 399-494 1-92 (130)
441 KOG2361 Predicted methyltransf 68.2 4.2 9E-05 43.6 2.9 100 646-748 74-186 (264)
442 PF01596 Methyltransf_3: O-met 67.5 3.4 7.3E-05 43.1 2.1 135 639-781 41-205 (205)
443 PRK10909 rsmD 16S rRNA m(2)G96 67.4 2 4.3E-05 44.5 0.4 123 646-780 56-190 (199)
444 cd05188 MDR Medium chain reduc 66.9 25 0.00055 36.1 8.5 91 388-491 133-232 (271)
445 KOG2539 Mitochondrial/chloropl 66.5 25 0.00055 41.0 8.9 103 389-492 200-316 (491)
446 PF05185 PRMT5: PRMT5 arginine 66.4 3.1 6.8E-05 48.4 1.7 97 644-742 187-294 (448)
447 cd08234 threonine_DH_like L-th 65.5 35 0.00076 36.8 9.6 90 388-490 158-256 (334)
448 KOG1270 Methyltransferases [Co 65.3 4.8 0.0001 43.6 2.7 95 645-748 91-198 (282)
449 cd08232 idonate-5-DH L-idonate 64.8 29 0.00062 37.7 8.8 90 389-490 165-261 (339)
450 PRK13168 rumA 23S rRNA m(5)U19 64.6 6.1 0.00013 45.7 3.7 110 645-765 299-420 (443)
451 TIGR00479 rumA 23S rRNA (uraci 64.3 5.1 0.00011 46.0 3.0 111 645-765 294-416 (431)
452 PLN02586 probable cinnamyl alc 64.1 19 0.00042 40.1 7.4 92 389-491 183-278 (360)
453 TIGR03366 HpnZ_proposed putati 64.0 26 0.00056 37.4 8.1 90 389-491 120-218 (280)
454 cd00401 AdoHcyase S-adenosyl-L 63.9 30 0.00064 40.1 8.9 97 374-492 189-290 (413)
455 TIGR02825 B4_12hDH leukotriene 63.0 45 0.00098 36.1 9.9 90 388-490 137-236 (325)
456 KOG1227 Putative methyltransfe 62.9 6.2 0.00013 43.5 3.0 130 345-486 154-290 (351)
457 cd08281 liver_ADH_like1 Zinc-d 62.8 26 0.00057 39.0 8.2 90 389-491 191-290 (371)
458 TIGR03451 mycoS_dep_FDH mycoth 62.4 35 0.00077 37.7 9.1 92 388-492 175-277 (358)
459 PF02527 GidB: rRNA small subu 62.3 10 0.00022 38.9 4.4 111 646-767 51-173 (184)
460 cd08237 ribitol-5-phosphate_DH 61.6 32 0.00069 38.0 8.5 89 389-492 163-257 (341)
461 PF07423 DUF1510: Protein of u 60.5 7.3 0.00016 41.2 3.0 28 14-41 10-37 (217)
462 cd08239 THR_DH_like L-threonin 60.5 37 0.00081 36.9 8.7 91 389-491 163-262 (339)
463 cd08255 2-desacetyl-2-hydroxye 59.6 45 0.00098 34.9 8.9 89 388-490 96-189 (277)
464 PF01739 CheR: CheR methyltran 59.2 4.9 0.00011 41.7 1.4 53 692-746 124-176 (196)
465 PRK11933 yebU rRNA (cytosine-C 59.2 9.2 0.0002 44.9 3.8 98 646-744 116-241 (470)
466 PLN03154 putative allyl alcoho 58.7 48 0.001 36.8 9.3 91 388-491 157-258 (348)
467 KOG2651 rRNA adenine N-6-methy 58.5 14 0.00031 42.0 5.0 52 374-425 138-192 (476)
468 PRK03522 rumB 23S rRNA methylu 58.4 4 8.7E-05 45.0 0.7 108 645-765 175-292 (315)
469 PF01795 Methyltransf_5: MraW 58.3 31 0.00068 38.4 7.6 77 388-488 19-99 (310)
470 KOG1499 Protein arginine N-met 58.0 4 8.7E-05 45.7 0.6 99 633-742 48-164 (346)
471 PF01135 PCMT: Protein-L-isoas 57.9 3.9 8.5E-05 42.7 0.5 88 646-743 75-170 (209)
472 COG5271 MDN1 AAA ATPase contai 57.8 24 0.00052 47.2 7.1 12 665-676 4494-4505(4600)
473 PF02636 Methyltransf_28: Puta 57.7 15 0.00032 39.2 4.8 33 390-422 19-63 (252)
474 PRK10611 chemotaxis methyltran 56.1 8.2 0.00018 42.4 2.6 42 703-745 221-262 (287)
475 PRK11524 putative methyltransf 56.0 36 0.00078 37.0 7.6 42 388-429 207-250 (284)
476 cd00315 Cyt_C5_DNA_methylase C 55.8 20 0.00043 38.9 5.5 64 392-461 2-70 (275)
477 KOG1269 SAM-dependent methyltr 55.2 12 0.00027 42.4 3.9 89 646-744 113-214 (364)
478 PLN02740 Alcohol dehydrogenase 55.1 54 0.0012 36.8 9.0 92 388-491 197-300 (381)
479 PF13578 Methyltransf_24: Meth 54.5 5 0.00011 36.4 0.6 94 648-745 1-105 (106)
480 PTZ00357 methyltransferase; Pr 54.0 37 0.00079 41.6 7.5 96 391-486 702-830 (1072)
481 TIGR03201 dearomat_had 6-hydro 53.5 61 0.0013 35.7 9.0 93 388-492 165-273 (349)
482 KOG1501 Arginine N-methyltrans 53.5 32 0.0007 39.9 6.7 65 371-436 46-115 (636)
483 PF01555 N6_N4_Mtase: DNA meth 53.1 23 0.00051 35.7 5.3 38 388-425 190-229 (231)
484 PF04445 SAM_MT: Putative SAM- 52.1 27 0.00058 37.4 5.6 71 391-461 77-159 (234)
485 PF02005 TRM: N2,N2-dimethylgu 52.0 33 0.00072 39.2 6.7 98 390-493 50-156 (377)
486 PHA01634 hypothetical protein 51.3 68 0.0015 31.6 7.6 68 389-459 28-98 (156)
487 PLN02823 spermine synthase 50.8 8.4 0.00018 43.2 1.7 98 643-744 103-219 (336)
488 COG4122 Predicted O-methyltran 50.5 10 0.00022 40.1 2.2 135 639-781 55-218 (219)
489 PLN02178 cinnamyl-alcohol dehy 49.6 45 0.00097 37.6 7.3 91 389-491 178-273 (375)
490 PRK13699 putative methylase; P 49.4 56 0.0012 34.5 7.5 42 388-429 162-205 (227)
491 PF01555 N6_N4_Mtase: DNA meth 49.3 8.4 0.00018 39.0 1.3 21 724-744 35-55 (231)
492 PF01269 Fibrillarin: Fibrilla 49.3 2.9 6.3E-05 44.2 -2.1 94 646-744 76-177 (229)
493 PLN02672 methionine S-methyltr 49.3 15 0.00032 47.4 3.6 40 725-764 258-298 (1082)
494 COG0421 SpeE Spermidine syntha 48.9 12 0.00027 41.0 2.5 123 639-764 72-214 (282)
495 PLN02827 Alcohol dehydrogenase 48.5 63 0.0014 36.3 8.2 92 388-491 192-295 (378)
496 PRK04148 hypothetical protein; 48.3 4.4 9.5E-05 39.7 -0.9 50 645-697 18-69 (134)
497 PF03269 DUF268: Caenorhabditi 48.2 12 0.00026 38.0 2.1 45 700-744 58-110 (177)
498 PRK10309 galactitol-1-phosphat 48.1 99 0.0021 33.9 9.5 93 388-492 159-261 (347)
499 COG2521 Predicted archaeal met 47.3 24 0.00053 37.9 4.3 131 646-781 137-287 (287)
500 cd08295 double_bond_reductase_ 46.9 92 0.002 34.0 9.1 89 388-489 150-249 (338)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=3.2e-143 Score=1187.51 Aligned_cols=497 Identities=56% Similarity=1.066 Sum_probs=472.8
Q ss_pred CcccCccHHHHHhcccccccccccccCCCC--CCCCCCCCCCCCCCCCCCcccccccccccCCCchhHHhhhcccccccc
Q 003776 275 DFIPCLDNLQAIKKLRSTKHYEHRERHCPE--EPPTCLVPLPEGYKRSIEWPTSREKIWYYNVPHTKLAKIKGHQNWVKV 352 (796)
Q Consensus 275 ~~~pc~d~~~~~~~~~~~~~~~~rerhCp~--~~~~Clvp~P~~yk~P~~WP~srd~iW~~Nvp~t~L~~~k~~qnW~~~ 352 (796)
|||||+|+.+++++++++.+|||||||||+ ++++||||+|++|+.||+||+||+++||.|+||+.|+++|+.|||+..
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~ 80 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRV 80 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccceee
Confidence 799999999999998899999999999998 799999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCCccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhCCeEEEeCChhhHHHHHHHHHHH
Q 003776 353 TGEYLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALE 432 (796)
Q Consensus 353 ~g~~~~Fpgggt~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~~V~gvDiSp~dl~~A~~q~A~e 432 (796)
.++++.||||+++|.+|+.+|++.|.++++.+.+++..+++||+|||+|+|+++|++++|++|.+++.+.+++++|+|++
T Consensus 81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred cCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence 99999999999999999999999999999987777888999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCCCC-CCchHHHHHHHHHHHH
Q 003776 433 RGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVY-QKLPEDVEIWNAMSQL 511 (796)
Q Consensus 433 rgl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~-~~l~El~~~~~~le~l 511 (796)
||+++++.+.+..+||||+++||+|||+.|+++|+.+...+|.|++|+|||||+|+++.++++ .+..++.+.|..++.+
T Consensus 161 RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l 240 (506)
T PF03141_consen 161 RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDL 240 (506)
T ss_pred cCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHH
Confidence 999999888889999999999999999999999999888999999999999999999999999 5667888999999999
Q ss_pred HHhhcceeehhhhhhccceeEEEEEecCChhhHhhhcc-CCCCcccCCCCCCcccccccccccccCcccccccCCCCCCC
Q 003776 512 IKAMCWELVSISKDTINKVGIAVYRKPTSNECYEKRSQ-QQPPVCLGSDDPNAAWHVPLQACMHKVPEESLERGSQWPEQ 590 (796)
Q Consensus 512 ~~~~~W~~v~~~~~~l~dvG~~L~rkgf~~~Cy~~r~~-~~~pvc~~d~d~~~~wY~~l~~ci~~Lp~~~~~~G~~~p~~ 590 (796)
++.+||+.+....+ .+||||+.+++||.+|+. +.||+|+.+++++.+||.+|++||+++|......++.|+++
T Consensus 241 ~~~lCW~~va~~~~------~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~~ 314 (506)
T PF03141_consen 241 AKSLCWKKVAEKGD------TAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLPK 314 (506)
T ss_pred HHHHHHHHheeeCC------EEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCCC
Confidence 99999999998875 899999999999999986 89999977789999999999999999998765667789999
Q ss_pred cccccccCCcccccccccccCCCchhhHHHHHHhhccccccee-eecccccccccccccccCccccceeeeccCCCeEEE
Q 003776 591 WPARLEKTPYWLLSSQVGVYGKSAPEDFTADYEHWKRVVSKSY-LNGMGINWSTVRNVMDMRSVYGGFAAAMKDISVWVM 669 (796)
Q Consensus 591 WP~RL~~~P~rL~~~~~gl~gr~t~e~F~eD~e~Wk~rV~~tY-~~~lgi~w~~iRnvmDm~~g~g~faA~l~~~~vwvm 669 (796)
||+||+++|+||.... +...+.+.|.+|+++|+++|.+|| +..+.+.|++||||||||||||||||||+++|||||
T Consensus 315 WP~RL~~~P~rl~~~~---~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVM 391 (506)
T PF03141_consen 315 WPERLNAVPPRLSSGS---IPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVM 391 (506)
T ss_pred ChhhhccCchhhhcCC---cCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEE
Confidence 9999999999997633 344589999999999999999766 344569999999999999999999999999999999
Q ss_pred EeecCCCCCChhHHHhhcccccccccccccCCCCccccccccccccccccCCcchHHHHHhhcccccCCcEEEEeccHHH
Q 003776 670 NVISIDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVET 749 (796)
Q Consensus 670 nv~p~~~~~~l~~i~eRGlig~~~~~ce~f~typrtyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~~~ 749 (796)
||||+.++|||++||||||||+||||||+|||||||||||||++|||.+.+||.|.+|||||||||||||++||||+.++
T Consensus 392 NVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~v 471 (506)
T PF03141_consen 392 NVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVDV 471 (506)
T ss_pred EecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEeeccC----CceEEEEEe
Q 003776 750 INELESMVKGMQWEVRMTYSKD----KEGLLCVEK 780 (796)
Q Consensus 750 ~~~~~~~~~~l~W~~~~~~~~~----~e~~l~~~K 780 (796)
+.+|+.|+++|||++++.++++ +|+||||||
T Consensus 472 l~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 472 LEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred HHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 9999999999999999998876 699999998
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=1.9e-35 Score=329.04 Aligned_cols=194 Identities=21% Similarity=0.344 Sum_probs=151.1
Q ss_pred ccccccccCcccccccCCCCCCCcccccccCCcccccccccccCCCchhhHHHHHHhhcc------ccc-------c---
Q 003776 568 PLQACMHKVPEESLERGSQWPEQWPARLEKTPYWLLSSQVGVYGKSAPEDFTADYEHWKR------VVS-------K--- 631 (796)
Q Consensus 568 ~l~~ci~~Lp~~~~~~G~~~p~~WP~RL~~~P~rL~~~~~gl~gr~t~e~F~eD~e~Wk~------rV~-------~--- 631 (796)
....|+.++|. |+..|.+||+......+.... + +...-.+..++|.+ ++| +
T Consensus 33 ~~~~CLVp~P~-----gYk~P~~WP~SRd~iW~~Nvp-----h---~~L~~~K~~qnWv~~~gd~~~FPgggt~F~~Ga~ 99 (506)
T PF03141_consen 33 ERLRCLVPPPK-----GYKTPIPWPKSRDYIWYANVP-----H---TKLAEEKADQNWVRVEGDKFRFPGGGTMFPHGAD 99 (506)
T ss_pred CCCccccCCCc-----cCCCCCCCCcccceeeecccC-----c---hHHhhhcccccceeecCCEEEeCCCCccccCCHH
Confidence 45689999997 999999999966555432211 1 23444566677865 222 1
Q ss_pred eeeeccc----c--cccccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhcc---cccccccccccCC
Q 003776 632 SYLNGMG----I--NWSTVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGL---FGIYHDWCESFST 701 (796)
Q Consensus 632 tY~~~lg----i--~w~~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGl---ig~~~~~ce~f~t 701 (796)
.|+..+. . .-+.||++||+|||+|||||+|++++|.+|+++|.+.| +|+||++|||+ ||++.+...|||
T Consensus 100 ~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp- 178 (506)
T PF03141_consen 100 HYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFP- 178 (506)
T ss_pred HHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCC-
Confidence 2543332 2 33789999999999999999999999999999999999 99999999996 555555555554
Q ss_pred CCccccccccccccccccCCcchHHHHHhhcccccCCcEEEEe----------ccHHHHHHHHHHHhcCCceEEEeeccC
Q 003776 702 YPRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR----------DDVETINELESMVKGMQWEVRMTYSKD 771 (796)
Q Consensus 702 yprtyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r----------d~~~~~~~~~~~~~~l~W~~~~~~~~~ 771 (796)
.|+||||||++++..|...- .++|+|||||||||||||++ |..+++.+|+.++++|||+..+.
T Consensus 179 -~~~fDmvHcsrc~i~W~~~~--g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~---- 251 (506)
T PF03141_consen 179 -SNAFDMVHCSRCLIPWHPND--GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAE---- 251 (506)
T ss_pred -ccchhhhhcccccccchhcc--cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHhee----
Confidence 69999999666666665443 36899999999999999996 34679999999999999999988
Q ss_pred CceEEEEEecc
Q 003776 772 KEGLLCVEKSM 782 (796)
Q Consensus 772 ~e~~l~~~K~~ 782 (796)
+..++||||+.
T Consensus 252 ~~~~aIwqKp~ 262 (506)
T PF03141_consen 252 KGDTAIWQKPT 262 (506)
T ss_pred eCCEEEEeccC
Confidence 66799999985
No 3
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.85 E-value=3.8e-22 Score=202.66 Aligned_cols=220 Identities=15% Similarity=0.095 Sum_probs=180.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
+....++|||||.|.+.+.|... .++.+|.|..|+..++ -++..++....++.|.+.|+|.+++||+|+++++ +
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~--~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSls-l 147 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCR--DAQDPSIETSYFVGDEEFLDFKENSVDLIISSLS-L 147 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhh--ccCCCceEEEEEecchhcccccccchhhhhhhhh-h
Confidence 34668999999999999999886 6789999998875553 3334566678889999999999999999999986 9
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHhhcceeehhhhhhccceeEEEEEecCChhhH
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKDTINKVGIAVYRKPTSNECY 544 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~El~~~~~~le~l~~~~~W~~v~~~~~~l~dvG~~L~rkgf~~~Cy 544 (796)
||.++++..+.++...|||+|.|+.+ .++.++|.|++-..+-++....++..+++.+|. .++++|.++-|+||+
T Consensus 148 HW~NdLPg~m~~ck~~lKPDg~Fias-mlggdTLyELR~slqLAelER~GGiSphiSPf~-qvrDiG~LL~rAGF~---- 221 (325)
T KOG2940|consen 148 HWTNDLPGSMIQCKLALKPDGLFIAS-MLGGDTLYELRCSLQLAELEREGGISPHISPFT-QVRDIGNLLTRAGFS---- 221 (325)
T ss_pred hhhccCchHHHHHHHhcCCCccchhH-HhccccHHHHHHHhhHHHHHhccCCCCCcChhh-hhhhhhhHHhhcCcc----
Confidence 99999999999999999999999966 889999999999887777777788899999999 699999999999999
Q ss_pred hhhccCCCCcccCCCCCCcccccccccccccCcccccccCCCCCCCcccccccCCcccccccccccCCCchhhHHHHHHh
Q 003776 545 EKRSQQQPPVCLGSDDPNAAWHVPLQACMHKVPEESLERGSQWPEQWPARLEKTPYWLLSSQVGVYGKSAPEDFTADYEH 624 (796)
Q Consensus 545 ~~r~~~~~pvc~~d~d~~~~wY~~l~~ci~~Lp~~~~~~G~~~p~~WP~RL~~~P~rL~~~~~gl~gr~t~e~F~eD~e~ 624 (796)
.+. .|.|.+.+-|+.|+.+|.+|++|+|+|.+.. +..++.|.+..+..+-|+.
T Consensus 222 -------m~t--vDtDEi~v~Yp~mfeLm~dLq~MgEsn~~~~------------------Rn~~l~Ret~vAaaAiY~s 274 (325)
T KOG2940|consen 222 -------MLT--VDTDEIVVGYPRMFELMEDLQGMGESNAALN------------------RNAILNRETMVAAAAIYQS 274 (325)
T ss_pred -------cce--ecccceeecCchHHHHHHHHHhhcccchhhc------------------cCccccHHHHHHHHHHHHH
Confidence 444 4788899999999999999999988876521 1122233344444444443
Q ss_pred ----hcccccceeeecccccccc
Q 003776 625 ----WKRVVSKSYLNGMGINWST 643 (796)
Q Consensus 625 ----Wk~rV~~tY~~~lgi~w~~ 643 (796)
=-..+|++|.++|.++|+-
T Consensus 275 mya~e~~~iPATfqiiy~iGWk~ 297 (325)
T KOG2940|consen 275 MYATEDGTIPATFQIIYMIGWKP 297 (325)
T ss_pred HhcCCCCCcceeEEEEEEEccCc
Confidence 2237999999999999964
No 4
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.80 E-value=3.7e-19 Score=186.80 Aligned_cols=217 Identities=20% Similarity=0.272 Sum_probs=150.2
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCC
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPG 451 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd 451 (796)
.+.+.+.++. ....+|||+|||+|.++..|+.. .|+++|+++.++..++. +.....+...+.+.+|+++
T Consensus 31 a~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~-----~~~~~~~~~~d~~~~~~~~ 101 (251)
T PRK10258 31 ADALLAMLPQ----RKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQ-----KDAADHYLAGDIESLPLAT 101 (251)
T ss_pred HHHHHHhcCc----cCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHh-----hCCCCCEEEcCcccCcCCC
Confidence 3445555543 34679999999999999988764 89999999988766652 2223356778888999999
Q ss_pred CceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHhhcceeehhhhhhcccee
Q 003776 452 IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKDTINKVG 531 (796)
Q Consensus 452 ~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~El~~~~~~le~l~~~~~W~~v~~~~~~l~dvG 531 (796)
++||+|+++.+ ++|..++..+|.++.|+|||||+|+++ .++..+++++...|..+........+........
T Consensus 102 ~~fD~V~s~~~-l~~~~d~~~~l~~~~~~Lk~gG~l~~~-~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~------ 173 (251)
T PRK10258 102 ATFDLAWSNLA-VQWCGNLSTALRELYRVVRPGGVVAFT-TLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQ------ 173 (251)
T ss_pred CcEEEEEECch-hhhcCCHHHHHHHHHHHcCCCeEEEEE-eCCCCchHHHHHHHHHhccCCccccCCCHHHHHH------
Confidence 99999999875 889889999999999999999999998 6777888998888765432211111212222221
Q ss_pred EEEEEecCChhhHhhhccCCCCcccCCCCCCcccccccccccccCcccccccCCCCCCCcccccccCCcccccccccccC
Q 003776 532 IAVYRKPTSNECYEKRSQQQPPVCLGSDDPNAAWHVPLQACMHKVPEESLERGSQWPEQWPARLEKTPYWLLSSQVGVYG 611 (796)
Q Consensus 532 ~~L~rkgf~~~Cy~~r~~~~~pvc~~d~d~~~~wY~~l~~ci~~Lp~~~~~~G~~~p~~WP~RL~~~P~rL~~~~~gl~g 611 (796)
.+.+.++. . +.+..+.+|.+..++|+.|+.+ |+... ...+..++++
T Consensus 174 -~l~~~~~~--------------~--~~~~~~~~f~~~~~~l~~lk~~----G~~~~-------------~~~~~~~~~~ 219 (251)
T PRK10258 174 -ALNGWRYQ--------------H--HIQPITLWFDDALSAMRSLKGI----GATHL-------------HEGRDPRILT 219 (251)
T ss_pred -HHHhCCce--------------e--eeeEEEEECCCHHHHHHHHHHh----CCCCC-------------CCCCCCCCCc
Confidence 11111111 1 3355778999999999999998 54210 1112345566
Q ss_pred CCchhhHHHHHHhhcccccceeeecccccc
Q 003776 612 KSAPEDFTADYEHWKRVVSKSYLNGMGINW 641 (796)
Q Consensus 612 r~t~e~F~eD~e~Wk~rV~~tY~~~lgi~w 641 (796)
|.....|.+.|..=..+++.||.++|++.+
T Consensus 220 ~~~~~~~~~~~~~~~g~~~lty~v~~~~~~ 249 (251)
T PRK10258 220 RSQLQRLQLAWPQQQGRYPLTYHLFLGVIE 249 (251)
T ss_pred HHHHHHHHHhccccCCCcceEEEEEEEEEE
Confidence 666677776654423379999999887543
No 5
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.73 E-value=7.7e-18 Score=192.69 Aligned_cols=111 Identities=15% Similarity=0.217 Sum_probs=82.5
Q ss_pred HHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCC--CCCCC
Q 003776 375 DFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTE--RLPFP 450 (796)
Q Consensus 375 d~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e--~LPfp 450 (796)
..+.+.++. .++.+|||||||+|.++..|+++ .|+++|+++.++..+... ......+.+...+.. .+|++
T Consensus 27 ~~il~~l~~----~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~--~~~~~~i~~~~~d~~~~~~~~~ 100 (475)
T PLN02336 27 PEILSLLPP----YEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESI--NGHYKNVKFMCADVTSPDLNIS 100 (475)
T ss_pred hHHHhhcCc----cCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHH--hccCCceEEEEecccccccCCC
Confidence 344555543 24679999999999999999875 799999999998765421 111223456666653 57888
Q ss_pred CCceeEEEEcCCCcccccc--hHHHHHHHHhhcCCCcEEEEEeC
Q 003776 451 GIVFDAVHCARCRVPWHIE--GGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 451 d~SFDlVvss~~~l~w~~d--~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+++||+|+|+.+ +++..+ ...+|.+++|+|||||+|++...
T Consensus 101 ~~~fD~I~~~~~-l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 101 DGSVDLIFSNWL-LMYLSDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred CCCEEEEehhhh-HHhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 899999999875 554443 47899999999999999998643
No 6
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.66 E-value=9.4e-16 Score=160.55 Aligned_cols=115 Identities=26% Similarity=0.327 Sum_probs=94.7
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTER 446 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~ 446 (796)
.|-+.+...+.. +++.+|||||||||-++..+++. .|+++|+++.|+..++.+. ...++. +.+.+++++.
T Consensus 38 ~Wr~~~i~~~~~----~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~-~~~~~~~i~fv~~dAe~ 112 (238)
T COG2226 38 LWRRALISLLGI----KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKL-KKKGVQNVEFVVGDAEN 112 (238)
T ss_pred HHHHHHHHhhCC----CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHh-hccCccceEEEEechhh
Confidence 344444444432 26899999999999999999875 7999999999999998444 443333 6788899999
Q ss_pred CCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 447 LPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 447 LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
|||++++||+|.++++ +++..|...+|+|++|||||||.+++...
T Consensus 113 LPf~D~sFD~vt~~fg-lrnv~d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 113 LPFPDNSFDAVTISFG-LRNVTDIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred CCCCCCccCEEEeeeh-hhcCCCHHHHHHHHHHhhcCCeEEEEEEc
Confidence 9999999999999986 88888999999999999999999887644
No 7
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.60 E-value=2e-15 Score=158.28 Aligned_cols=104 Identities=29% Similarity=0.366 Sum_probs=78.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARC 462 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~ 462 (796)
.++.+|||+|||||.++..|+++ .|+++|+++.|+..++.+........+.+.+++++.|||++++||+|+|+++
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fg 125 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFG 125 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhh
Confidence 45789999999999999988763 7999999999999998555443333678888999999999999999999985
Q ss_pred CcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 463 RVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 463 ~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
++...|+..+|+|++|||||||.|++...
T Consensus 126 -lrn~~d~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 126 -LRNFPDRERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp -GGG-SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -HHhhCCHHHHHHHHHHHcCCCeEEEEeec
Confidence 77777999999999999999999997644
No 8
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.56 E-value=5.7e-15 Score=129.66 Aligned_cols=92 Identities=28% Similarity=0.438 Sum_probs=72.9
Q ss_pred EEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcccccch
Q 003776 394 LDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHIEG 470 (796)
Q Consensus 394 LDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~d~ 470 (796)
||+|||+|.++..|+++ .|+++|+++.++..++... .. ....+...+...+||++++||+|++..+ ++|..++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~-~~--~~~~~~~~d~~~l~~~~~sfD~v~~~~~-~~~~~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRL-KN--EGVSFRQGDAEDLPFPDNSFDVVFSNSV-LHHLEDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHT-TT--STEEEEESBTTSSSS-TT-EEEEEEESH-GGGSSHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcc-cc--cCchheeehHHhCccccccccccccccc-eeeccCH
Confidence 89999999999999876 7999999998776665322 11 2234788889999999999999999874 6656789
Q ss_pred HHHHHHHHhhcCCCcEEEE
Q 003776 471 GKLLLELNRVLRPGGFFIW 489 (796)
Q Consensus 471 ~~~L~Ei~RVLKPGG~fv~ 489 (796)
..+|+++.|+|||||+|+|
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999986
No 9
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.54 E-value=4.2e-14 Score=150.99 Aligned_cols=156 Identities=23% Similarity=0.300 Sum_probs=108.7
Q ss_pred cccccCCCchhHHhhhcccccccccCcccccCCCCcccccc-------------HHHHHHHHHHhCcccccCCCCCEEEE
Q 003776 329 KIWYYNVPHTKLAKIKGHQNWVKVTGEYLTFPGGGTQFKNG-------------ALHYIDFIQESVPDVAWGKRTRVVLD 395 (796)
Q Consensus 329 ~iW~~Nvp~t~L~~~k~~qnW~~~~g~~~~Fpgggt~F~~~-------------a~~yid~L~e~Lp~i~~~~~~~~VLD 395 (796)
..|.+...|.......+|.|..........-||+...+... .......|.+.++ ....+|||
T Consensus 17 ~~~~C~~~h~fd~a~~Gy~~ll~~~~~~~~~~~d~~~~~~ar~~fl~~g~y~~l~~~i~~~l~~~l~-----~~~~~vLD 91 (272)
T PRK11088 17 NSWICPQNHQFDCAKEGYVNLLPVQHKRSKDPGDNKEMMQARRAFLDAGHYQPLRDAVANLLAERLD-----EKATALLD 91 (272)
T ss_pred CEEEcCCCCCCccccCceEEeccccccCCCCCCcCHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcC-----CCCCeEEE
Confidence 34777778888788888888776555544445544322221 1111122222222 24578999
Q ss_pred ECCCCchhHHHHhhC-------CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCccccc
Q 003776 396 VGCGVASFGGFLFDR-------GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHI 468 (796)
Q Consensus 396 IGCGtG~~a~~La~~-------~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~ 468 (796)
+|||+|.++..|+.. .|+|+|+++.++..|. ++...+.+.+++...+||++++||+|++.++
T Consensus 92 iGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~-----~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~------ 160 (272)
T PRK11088 92 IGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAA-----KRYPQVTFCVASSHRLPFADQSLDAIIRIYA------ 160 (272)
T ss_pred ECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHH-----HhCCCCeEEEeecccCCCcCCceeEEEEecC------
Confidence 999999999988753 4799999998876654 3444567788888899999999999998762
Q ss_pred chHHHHHHHHhhcCCCcEEEEEeCCCCCCchHHHH
Q 003776 469 EGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVE 503 (796)
Q Consensus 469 d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~El~~ 503 (796)
+..+.+++|+|||||+|++. .+...++.+++.
T Consensus 161 --~~~~~e~~rvLkpgG~li~~-~p~~~~l~el~~ 192 (272)
T PRK11088 161 --PCKAEELARVVKPGGIVITV-TPGPRHLFELKG 192 (272)
T ss_pred --CCCHHHHHhhccCCCEEEEE-eCCCcchHHHHH
Confidence 23468999999999999987 566666666544
No 10
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.51 E-value=2.1e-13 Score=145.15 Aligned_cols=104 Identities=23% Similarity=0.272 Sum_probs=85.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHH--HcC-CCeEEEEcCCCCCCCCCCceeEEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFAL--ERG-IPAISAVMGTERLPFPGIVFDAVHC 459 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~--erg-l~~~~~v~d~e~LPfpd~SFDlVvs 459 (796)
.++.+|||+|||+|.++..|+++ .|+|+|+++.|+..|+.+... ... ..+.+...++..+|+++++||+|++
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~ 151 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM 151 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence 35789999999999999888753 699999999999888744321 112 2456778888999999999999999
Q ss_pred cCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 460 ARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 460 s~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+++ +++..++..+|.+++|+|||||+|++...
T Consensus 152 ~~~-l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 152 GYG-LRNVVDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred ecc-cccCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 875 77777999999999999999999998744
No 11
>PLN02244 tocopherol O-methyltransferase
Probab=99.49 E-value=3.9e-13 Score=148.29 Aligned_cols=124 Identities=23% Similarity=0.336 Sum_probs=94.1
Q ss_pred ccccHHHHHHHHHHhCccc-ccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCC--CeEE
Q 003776 366 FKNGALHYIDFIQESVPDV-AWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGI--PAIS 439 (796)
Q Consensus 366 F~~~a~~yid~L~e~Lp~i-~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl--~~~~ 439 (796)
+.......++.+.+.+..- ....++.+|||||||+|.++..|+++ .|+|+|+++.++..++ +.+...++ .+.+
T Consensus 94 ~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~-~~~~~~g~~~~v~~ 172 (340)
T PLN02244 94 HRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARAN-ALAAAQGLSDKVSF 172 (340)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHH-HHHHhcCCCCceEE
Confidence 3333344444455444310 00135679999999999999999874 8999999999988886 44445554 3677
Q ss_pred EEcCCCCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 440 AVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 440 ~v~d~e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.+.|...+||++++||+|++..+ +++..+...+|.+++|+|||||+|++..
T Consensus 173 ~~~D~~~~~~~~~~FD~V~s~~~-~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 173 QVADALNQPFEDGQFDLVWSMES-GEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred EEcCcccCCCCCCCccEEEECCc-hhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 88888999999999999999875 5555688999999999999999999874
No 12
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.46 E-value=5.6e-13 Score=142.04 Aligned_cols=115 Identities=16% Similarity=0.181 Sum_probs=88.4
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP 448 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP 448 (796)
.....+...+.. .++.+|||||||+|.++..|+.. .|+++|+++.++..++..... ...+.+...+...+|
T Consensus 39 ~~~~~~l~~l~l----~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~~ 112 (263)
T PTZ00098 39 EATTKILSDIEL----NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKKD 112 (263)
T ss_pred HHHHHHHHhCCC----CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccCC
Confidence 334555555543 45789999999999999888753 799999999998877644322 234566777878889
Q ss_pred CCCCceeEEEEcCCCccccc-chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 449 FPGIVFDAVHCARCRVPWHI-EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 449 fpd~SFDlVvss~~~l~w~~-d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+++++||+|++..+++|+.. ++..+|++++|+|||||+|+++..
T Consensus 113 ~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 113 FPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99999999999765344332 778999999999999999998754
No 13
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.46 E-value=2.2e-12 Score=133.53 Aligned_cols=114 Identities=21% Similarity=0.255 Sum_probs=89.7
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCCCC
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTER 446 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~e~ 446 (796)
+...+.+.+.. .++.+|||+|||+|.++..|++. .|+++|+++.++..++...+ ..++ .+.+...+...
T Consensus 33 ~~~~~l~~l~~----~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~v~~~~~d~~~ 107 (231)
T TIGR02752 33 WRKDTMKRMNV----QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVK-DAGLHNVELVHGNAME 107 (231)
T ss_pred HHHHHHHhcCC----CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-hcCCCceEEEEechhc
Confidence 33445555542 35789999999999999888753 79999999999888874443 3344 35667778888
Q ss_pred CCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 447 LPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 447 LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+|+++++||+|++... +++..++..+|.++.|+|||||+|++..+
T Consensus 108 ~~~~~~~fD~V~~~~~-l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 108 LPFDDNSFDYVTIGFG-LRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCCCCCCccEEEEecc-cccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 8898899999999874 77777889999999999999999997643
No 14
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.45 E-value=4.3e-13 Score=137.84 Aligned_cols=110 Identities=25% Similarity=0.396 Sum_probs=87.0
Q ss_pred CCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~ 465 (796)
..+|||||||+|.++..|+.. .++++|+++.++..++.... ..+.+...+...+|+++++||+|+++.+ ++
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~vi~~~~-l~ 109 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPLEDSSFDLIVSNLA-LQ 109 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCCCCCceeEEEEhhh-hh
Confidence 578999999999999988874 67999999988766653322 2346677888888988899999999875 77
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEeCCCCCCchHHHHHH
Q 003776 466 WHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIW 505 (796)
Q Consensus 466 w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~El~~~~ 505 (796)
|..++..+|.++.++|||||+|+++ .+....+.+....+
T Consensus 110 ~~~~~~~~l~~~~~~L~~~G~l~~~-~~~~~~~~~~~~~~ 148 (240)
T TIGR02072 110 WCDDLSQALSELARVLKPGGLLAFS-TFGPGTLHELRQSF 148 (240)
T ss_pred hccCHHHHHHHHHHHcCCCcEEEEE-eCCccCHHHHHHHH
Confidence 7779999999999999999999987 45555555544433
No 15
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.44 E-value=7.9e-13 Score=137.52 Aligned_cols=101 Identities=28% Similarity=0.249 Sum_probs=87.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----------CeEEEeCChhhHHHHHHHHHHHcCCC----eEEEEcCCCCCCCCCCc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----------GVLTMSFAPKDEHEAQVQFALERGIP----AISAVMGTERLPFPGIV 453 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----------~V~gvDiSp~dl~~A~~q~A~ergl~----~~~~v~d~e~LPfpd~S 453 (796)
..+.++||++||||-++..+.+. +|+++|++|.||+.+. +.|.++++. ..+..+|++.|||++++
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgk-qRa~~~~l~~~~~~~w~~~dAE~LpFdd~s 177 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGK-QRAKKRPLKASSRVEWVEGDAEDLPFDDDS 177 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHH-HHHhhcCCCcCCceEEEeCCcccCCCCCCc
Confidence 45789999999999998888752 7999999999999997 555556543 46777799999999999
Q ss_pred eeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 454 FDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 454 FDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
||+..+++. +....++.++|+|++|||||||+|.+-
T Consensus 178 ~D~yTiafG-IRN~th~~k~l~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 178 FDAYTIAFG-IRNVTHIQKALREAYRVLKPGGRFSCL 213 (296)
T ss_pred ceeEEEecc-eecCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 999999886 777779999999999999999999965
No 16
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.44 E-value=1.5e-13 Score=132.66 Aligned_cols=109 Identities=28% Similarity=0.505 Sum_probs=82.6
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCC
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFP 450 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfp 450 (796)
+.+.+.+.++. ..+..+|||||||+|.++..|... .|+++|+++.++.. ........+....+++
T Consensus 9 ~~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~ 75 (161)
T PF13489_consen 9 YADLLERLLPR---LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK----------RNVVFDNFDAQDPPFP 75 (161)
T ss_dssp HHHHHHHHHTC---TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH----------TTSEEEEEECHTHHCH
T ss_pred HHHHHHHHhcc---cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh----------hhhhhhhhhhhhhhcc
Confidence 34444444432 145789999999999999999876 89999999977655 2222333333455567
Q ss_pred CCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCCCC
Q 003776 451 GIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVY 495 (796)
Q Consensus 451 d~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~ 495 (796)
+++||+|+|+.+ ++|..++..+|.++.++|||||+++++.+...
T Consensus 76 ~~~fD~i~~~~~-l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 76 DGSFDLIICNDV-LEHLPDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp SSSEEEEEEESS-GGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred ccchhhHhhHHH-HhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 899999999974 77777999999999999999999999865443
No 17
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.39 E-value=4.3e-12 Score=139.18 Aligned_cols=111 Identities=23% Similarity=0.216 Sum_probs=84.8
Q ss_pred HHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHH-cCCCeEEEEcCCCCCCCC
Q 003776 375 DFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALE-RGIPAISAVMGTERLPFP 450 (796)
Q Consensus 375 d~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~e-rgl~~~~~v~d~e~LPfp 450 (796)
+.+...++.+ .+.+|||||||+|.++..|+.. .|+|+|+++.++..+....... ....+.+...+.+.+|+
T Consensus 112 ~~l~~~l~~l----~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~- 186 (322)
T PRK15068 112 DRVLPHLSPL----KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA- 186 (322)
T ss_pred HHHHHhhCCC----CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-
Confidence 4555555432 3689999999999999999875 5999999998876543221111 12346677778889998
Q ss_pred CCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 451 GIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 451 d~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+++||+|+|... +++..++..+|++++++|||||.|++..
T Consensus 187 ~~~FD~V~s~~v-l~H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 187 LKAFDTVFSMGV-LYHRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred cCCcCEEEECCh-hhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 789999999863 5555689999999999999999999874
No 18
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.39 E-value=1.2e-12 Score=138.16 Aligned_cols=95 Identities=25% Similarity=0.399 Sum_probs=79.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCR 463 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~ 463 (796)
.++.+|||||||+|.++..|+.+ .|+|+|+++.|+..++ +++ +.+...+...++ ++++||+|+|+.+
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~-----~~~--~~~~~~d~~~~~-~~~~fD~v~~~~~- 98 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAAR-----ERG--VDARTGDVRDWK-PKPDTDVVVSNAA- 98 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH-----hcC--CcEEEcChhhCC-CCCCceEEEEehh-
Confidence 35789999999999999999864 7999999998886664 334 355667777664 5679999999875
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 464 VPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 464 l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+||..++..+|++++++|||||+|++..
T Consensus 99 l~~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 99 LQWVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred hhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 7887899999999999999999999874
No 19
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.39 E-value=3.8e-12 Score=139.47 Aligned_cols=102 Identities=20% Similarity=0.196 Sum_probs=84.0
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
.+.+|||||||+|.++..|+.. .|+|+|+++.++..|+.. +...+. .+.+...+++.+|+++++||+|+|..+ +
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~-~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v-L 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLH-ADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV-I 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH-H
Confidence 4679999999999999999875 799999999999888743 333222 456777777889988889999999873 5
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
++..++..+|.++.|+|||||.|+++..
T Consensus 209 eHv~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 209 EHVANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred HhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 5555999999999999999999999843
No 20
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.37 E-value=1.5e-12 Score=135.32 Aligned_cols=101 Identities=29% Similarity=0.356 Sum_probs=88.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCccc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w 466 (796)
.+.+|||+|||-|.++..|++. .|+|+|+++.++..|+ ..|.+.++.+.+.....++|-...++||+|+|.. +..
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak-~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmE--VlE 135 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAK-LHALESGVNIDYRQATVEDLASAGGQFDVVTCME--VLE 135 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHH-HhhhhccccccchhhhHHHHHhcCCCccEEEEhh--HHH
Confidence 4789999999999999999985 8999999999999998 6778888887777777778877768999999998 445
Q ss_pred c-cchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 467 H-IEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 467 ~-~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
| +++..+++.+.+.|||||.+++++.
T Consensus 136 Hv~dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 136 HVPDPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEecc
Confidence 5 5999999999999999999999843
No 21
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.36 E-value=4.7e-12 Score=123.23 Aligned_cols=101 Identities=24% Similarity=0.337 Sum_probs=84.6
Q ss_pred CCCEEEEECCCCchhHHHHhh-----CCeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCC--CCCCceeEEEEc
Q 003776 389 RTRVVLDVGCGVASFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLP--FPGIVFDAVHCA 460 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~-----~~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LP--fpd~SFDlVvss 460 (796)
...+|||+|||+|.++..|++ .+++|+|+++.++..++ +.+.+.+++ +.+.+.+...++ ++ +.||+|++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~-~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAK-KRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHH-HHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhh-cccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 467999999999999999993 37999999999999988 455566665 778888887787 76 899999998
Q ss_pred CCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 461 RCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 461 ~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
.. +++..++..+|.++.++|+|||.+++...
T Consensus 81 ~~-l~~~~~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 81 GV-LHHFPDPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp ST-GGGTSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred Cc-hhhccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 64 66666888999999999999999998744
No 22
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.34 E-value=6.2e-12 Score=128.13 Aligned_cols=98 Identities=14% Similarity=0.236 Sum_probs=77.7
Q ss_pred CCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcccc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWH 467 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~ 467 (796)
+.+|||+|||+|.++.+|+++ .|+++|+++.++..++ +.+...++.+...+.+...++++ ++||+|+++.+ +++.
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~-~~~~ 107 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVL-DMKARENLPLRTDAYDINAAALN-EDYDFIFSTVV-FMFL 107 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHHHhCCCceeEeccchhcccc-CCCCEEEEecc-cccC
Confidence 579999999999999999876 8999999999998887 44556677666666666556665 57999999874 4433
Q ss_pred c--chHHHHHHHHhhcCCCcEEEEE
Q 003776 468 I--EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 468 ~--d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
. +...++.+++|+|||||+|++.
T Consensus 108 ~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 108 QAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 2 4578999999999999996654
No 23
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.34 E-value=1e-11 Score=142.48 Aligned_cols=103 Identities=21% Similarity=0.296 Sum_probs=84.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
.++.+|||||||+|.++..|+.. .|+|+|+++.++..|+.. +......+.+.+.+...+|+++++||+|+|..+ +
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~-l 342 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALER-AIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDT-I 342 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHH-hhcCCCceEEEEcCcccCCCCCCCEEEEEECCc-c
Confidence 35679999999999998888764 799999999998877633 333334567778888888998899999999875 6
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+|..++..+|.+++|+|||||.|++...
T Consensus 343 ~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 343 LHIQDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred cccCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 6667899999999999999999998854
No 24
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.34 E-value=6.8e-12 Score=128.06 Aligned_cols=99 Identities=18% Similarity=0.283 Sum_probs=78.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCCCCCceeEEEEcCCCcc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPfpd~SFDlVvss~~~l~ 465 (796)
++.+|||+|||+|.++..|+++ .|+++|+++.++..++. .+...++. +.+.+.+...++++ ++||+|+|+.+ ++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~-~~ 106 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLER-IKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVV-LM 106 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHHHcCCCcceEEecChhhCCcC-CCcCEEEEecc-hh
Confidence 3579999999999999999986 79999999999988874 44445554 55666777677765 67999999874 55
Q ss_pred ccc--chHHHHHHHHhhcCCCcEEEEE
Q 003776 466 WHI--EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 466 w~~--d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+.. +...+|.++.|+|||||++++.
T Consensus 107 ~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 107 FLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 543 5689999999999999996543
No 25
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.34 E-value=6e-12 Score=115.13 Aligned_cols=101 Identities=24% Similarity=0.293 Sum_probs=77.8
Q ss_pred CCCEEEEECCCCchhHHHHhh--C--CeEEEeCChhhHHHHHHHHHHH-cCCCeEEEEcCC-CCCCCCCCceeEEEEcC-
Q 003776 389 RTRVVLDVGCGVASFGGFLFD--R--GVLTMSFAPKDEHEAQVQFALE-RGIPAISAVMGT-ERLPFPGIVFDAVHCAR- 461 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~--~--~V~gvDiSp~dl~~A~~q~A~e-rgl~~~~~v~d~-e~LPfpd~SFDlVvss~- 461 (796)
++.+|||||||+|.++..|++ . +|+++|+++.++..++...... ....+.+...+. ....+. ..||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCC
Confidence 367999999999999999988 3 8999999999999998555332 234567777777 334443 4699999987
Q ss_pred CCcccc---cchHHHHHHHHhhcCCCcEEEEEe
Q 003776 462 CRVPWH---IEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 462 ~~l~w~---~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+ +++. .+...+|..+.+.|+|||+|++..
T Consensus 80 ~-~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 T-LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp S-GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c-cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 3 2222 255789999999999999999874
No 26
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.33 E-value=1.1e-11 Score=132.02 Aligned_cols=109 Identities=24% Similarity=0.260 Sum_probs=85.9
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCCCCCCCCCCceeEEEEcC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~e~LPfpd~SFDlVvss~ 461 (796)
.++.+|||||||+|..+..++.. .|+++|+++.++..++.. +...++ .+.+...+.+.+|+++++||+|+++.
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~-~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARAN-ARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHH-HHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 35789999999999876655542 599999999999888743 344454 35566678888999989999999975
Q ss_pred CCcccccchHHHHHHHHhhcCCCcEEEEEeCCCCCCc
Q 003776 462 CRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKL 498 (796)
Q Consensus 462 ~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l 498 (796)
.+++..+...+|.+++|+|||||+|+++.......+
T Consensus 155 -v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~ 190 (272)
T PRK11873 155 -VINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGEL 190 (272)
T ss_pred -cccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCC
Confidence 467667889999999999999999999765444433
No 27
>PRK05785 hypothetical protein; Provisional
Probab=99.33 E-value=9.4e-12 Score=129.90 Aligned_cols=87 Identities=24% Similarity=0.222 Sum_probs=74.6
Q ss_pred CCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCccc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w 466 (796)
+.+|||||||||.++..|+++ .|+|+|+++.|+..++.. . ...+.+++.+||++++||+|+++++ +++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~-----~---~~~~~d~~~lp~~d~sfD~v~~~~~-l~~ 122 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA-----D---DKVVGSFEALPFRDKSFDVVMSSFA-LHA 122 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc-----c---ceEEechhhCCCCCCCEEEEEecCh-hhc
Confidence 679999999999999998875 799999999998877532 1 2456778899999999999999985 777
Q ss_pred ccchHHHHHHHHhhcCCCc
Q 003776 467 HIEGGKLLLELNRVLRPGG 485 (796)
Q Consensus 467 ~~d~~~~L~Ei~RVLKPGG 485 (796)
..++..+|+|++|+|||.+
T Consensus 123 ~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 123 SDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred cCCHHHHHHHHHHHhcCce
Confidence 7799999999999999953
No 28
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.32 E-value=2.6e-11 Score=126.87 Aligned_cols=103 Identities=14% Similarity=0.103 Sum_probs=80.4
Q ss_pred CCCEEEEECCCCchhHHHHhhC------CeEEEeCChhhHHHHHHHHHHHc-CCCeEEEEcCCCCCCCCCCceeEEEEcC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR------GVLTMSFAPKDEHEAQVQFALER-GIPAISAVMGTERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~------~V~gvDiSp~dl~~A~~q~A~er-gl~~~~~v~d~e~LPfpd~SFDlVvss~ 461 (796)
++.+|||||||+|.++..|+++ +|+++|+++.|+..++....... ...+.+...+...++++ .+|+|+++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 4679999999999999888752 69999999999988874443221 23456777888888876 489999987
Q ss_pred CCccccc--chHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 462 CRVPWHI--EGGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 462 ~~l~w~~--d~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
+ +||.. +...+|.+++|+|||||.|+++.+..
T Consensus 131 ~-l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 131 T-LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred c-hhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 5 66554 45789999999999999999985443
No 29
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.32 E-value=6.9e-12 Score=132.61 Aligned_cols=100 Identities=21% Similarity=0.233 Sum_probs=81.8
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCC-CCCCCceeEEEEcCCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERL-PFPGIVFDAVHCARCR 463 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~L-Pfpd~SFDlVvss~~~ 463 (796)
.+.+|||+|||+|.++..|+.. .|+++|+++.++..|+. .+...++ .+.+...+...+ ++++++||+|++..+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~-~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v- 121 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQ-AAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV- 121 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH-
Confidence 4679999999999999999886 79999999999988874 4444554 245666666655 366789999999874
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 464 VPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 464 l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
++|..++..+|.++.|+|||||+|++.
T Consensus 122 l~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 122 LEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 666668999999999999999999876
No 30
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.31 E-value=1.2e-11 Score=130.53 Aligned_cols=107 Identities=21% Similarity=0.316 Sum_probs=83.0
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCC
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF 449 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPf 449 (796)
...+...++. .++.+|||||||+|.++..|+.+ .|+++|+++.++..++. +...+.+...+...++
T Consensus 20 ~~~ll~~~~~----~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~-----~~~~~~~~~~d~~~~~- 89 (258)
T PRK01683 20 ARDLLARVPL----ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARS-----RLPDCQFVEADIASWQ- 89 (258)
T ss_pred HHHHHhhCCC----cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-----hCCCCeEEECchhccC-
Confidence 3444444442 35789999999999999988863 79999999988866653 2223456667766654
Q ss_pred CCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 450 PGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 450 pd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+.++||+|+++.+ ++|..+...+|.++.++|||||.|++..
T Consensus 90 ~~~~fD~v~~~~~-l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 90 PPQALDLIFANAS-LQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred CCCCccEEEEccC-hhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 4568999999975 7888899999999999999999999874
No 31
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.30 E-value=1.6e-11 Score=134.06 Aligned_cols=102 Identities=20% Similarity=0.190 Sum_probs=77.4
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHH-HcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFAL-ERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~-ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
.+++|||||||+|.++..++.. .|+|+|+++.|+..+...... .....+.+...+.+.+|.. .+||+|+|+.+ +
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gv-L 198 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGV-L 198 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcch-h
Confidence 4789999999999998888764 599999999888654321111 1122345566677788865 48999999874 5
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+|..++..+|.+++|+|||||.|++...
T Consensus 199 ~H~~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 199 YHRKSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred hccCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 5556899999999999999999998743
No 32
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.30 E-value=2.6e-11 Score=127.87 Aligned_cols=101 Identities=15% Similarity=0.143 Sum_probs=79.2
Q ss_pred CCCEEEEECCCCchhHHHHhh------CCeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCCCCCCCceeEEEEc
Q 003776 389 RTRVVLDVGCGVASFGGFLFD------RGVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLPFPGIVFDAVHCA 460 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~------~~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~LPfpd~SFDlVvss 460 (796)
++.+|||||||+|.++..|++ ..|+++|+++.|+..++.+.+. .+. .+.+...+...+|++ .||+|+++
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~-~~~~~~v~~~~~d~~~~~~~--~~D~vv~~ 132 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA-YKAPTPVDVIEGDIRDIAIE--NASMVVLN 132 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCCeEEEeCChhhCCCC--CCCEEehh
Confidence 467999999999999887765 2799999999999999855543 333 456677777777775 49999998
Q ss_pred CCCccccc--chHHHHHHHHhhcCCCcEEEEEeCC
Q 003776 461 RCRVPWHI--EGGKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 461 ~~~l~w~~--d~~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
++ +|+.. +...+|.+++|+|||||.|+++...
T Consensus 133 ~~-l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 133 FT-LQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred hH-HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 74 55443 3468999999999999999998543
No 33
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.28 E-value=1.9e-11 Score=123.93 Aligned_cols=101 Identities=29% Similarity=0.324 Sum_probs=85.0
Q ss_pred CEEEEECCCCchhHHHHhh---CCeEEEeCChhhHHHHHHHHHHHcCCCeE-EEEcCCCCCC-CCCCceeEEEEcCCCcc
Q 003776 391 RVVLDVGCGVASFGGFLFD---RGVLTMSFAPKDEHEAQVQFALERGIPAI-SAVMGTERLP-FPGIVFDAVHCARCRVP 465 (796)
Q Consensus 391 ~~VLDIGCGtG~~a~~La~---~~V~gvDiSp~dl~~A~~q~A~ergl~~~-~~v~d~e~LP-fpd~SFDlVvss~~~l~ 465 (796)
..||++|||||..-.++.- ..|+.+|.++.|-..+....+.++..... +.+++.++|| ++++++|.|+|.++ +-
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv-LC 156 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV-LC 156 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE-Ee
Confidence 4679999999987777653 38999999999998888777777666665 7778889999 89999999999885 44
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 466 WHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 466 w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
-+.++...|.++.|+|||||+++|-.+
T Consensus 157 Sve~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 157 SVEDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred ccCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 456999999999999999999998744
No 34
>PRK08317 hypothetical protein; Provisional
Probab=99.27 E-value=5.4e-11 Score=121.97 Aligned_cols=115 Identities=30% Similarity=0.323 Sum_probs=88.9
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER 446 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~ 446 (796)
.|.+.+.+.+.. .++.+|||+|||+|.++..++.+ .++++|+++.++..++.. ....+..+.+...+...
T Consensus 6 ~~~~~~~~~~~~----~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~-~~~~~~~~~~~~~d~~~ 80 (241)
T PRK08317 6 RYRARTFELLAV----QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAGLGPNVEFVRGDADG 80 (241)
T ss_pred HHHHHHHHHcCC----CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH-hhCCCCceEEEeccccc
Confidence 444555555543 45789999999999999888753 699999999888777643 22223445667777788
Q ss_pred CCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 447 LPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 447 LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+|+++++||+|++..+ +++..++..+|.++.++|||||++++..+
T Consensus 81 ~~~~~~~~D~v~~~~~-~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 81 LPFPDGSFDAVRSDRV-LQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred CCCCCCCceEEEEech-hhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 8888899999999875 56566899999999999999999998743
No 35
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.26 E-value=9.2e-11 Score=119.32 Aligned_cols=116 Identities=23% Similarity=0.138 Sum_probs=86.8
Q ss_pred CCCEEEEECCCCchhHHHHhh----CCeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCCCCCceeEEEEcCCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFD----RGVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCARCR 463 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~----~~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPfpd~SFDlVvss~~~ 463 (796)
++.+|||||||+|.++..++. ..|+++|+++.++..++ +.+...++. +.+...+...++. .++||+|++..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~-~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~-- 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLR-EVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA-- 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHH-HHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc--
Confidence 378999999999998888875 28999999999998887 445555554 5667777777776 67999999964
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHhhcceee
Q 003776 464 VPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELV 520 (796)
Q Consensus 464 l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~El~~~~~~le~l~~~~~W~~v 520 (796)
+ .++..++.+++++|||||+|++..... . ...+..++...+|...
T Consensus 121 ~---~~~~~~l~~~~~~LkpGG~lv~~~~~~--~-------~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 121 V---ASLSDLVELCLPLLKPGGRFLALKGRD--P-------EEEIAELPKALGGKVE 165 (187)
T ss_pred c---cCHHHHHHHHHHhcCCCeEEEEEeCCC--h-------HHHHHHHHHhcCceEe
Confidence 2 357889999999999999999874321 1 1234455555566643
No 36
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.26 E-value=5.6e-12 Score=114.40 Aligned_cols=92 Identities=29% Similarity=0.427 Sum_probs=73.1
Q ss_pred EEEECCCCchhHHHHhh-------CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcc
Q 003776 393 VLDVGCGVASFGGFLFD-------RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 393 VLDIGCGtG~~a~~La~-------~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~ 465 (796)
|||+|||+|..+..|.. ..++++|+++.++..++.. ....++++.+.+.|...+++..++||+|+|+.+.++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~-~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKR-FSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHH-SHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHh-chhcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 79999999999888874 3799999999999888744 344677889999999999998899999999664344
Q ss_pred ccc--chHHHHHHHHhhcCCCc
Q 003776 466 WHI--EGGKLLLELNRVLRPGG 485 (796)
Q Consensus 466 w~~--d~~~~L~Ei~RVLKPGG 485 (796)
+.. +...+|+++.++|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 432 45799999999999998
No 37
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.25 E-value=2.7e-11 Score=130.00 Aligned_cols=124 Identities=21% Similarity=0.360 Sum_probs=87.6
Q ss_pred ccCCCCccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcC
Q 003776 358 TFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERG 434 (796)
Q Consensus 358 ~Fpgggt~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~erg 434 (796)
.|+.+...+.......++.+.+.+.. +++.+|||||||.|.++.+++++ +|+|+.+|+.....++ +.+.+.|
T Consensus 35 ~~~~~~~~Le~AQ~~k~~~~~~~~~l----~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~-~~~~~~g 109 (273)
T PF02353_consen 35 YFDEGDDTLEEAQERKLDLLCEKLGL----KPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYAR-ERIREAG 109 (273)
T ss_dssp --SSTT--HHHHHHHHHHHHHTTTT------TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHH-HHHHCST
T ss_pred ecCCchhhHHHHHHHHHHHHHHHhCC----CCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHH-HHHHhcC
Confidence 35666666666666777788777764 57899999999999999999986 8999999997776665 4555667
Q ss_pred CC--eEEEEcCCCCCCCCCCceeEEEEcCCCccccc---chHHHHHHHHhhcCCCcEEEEEe
Q 003776 435 IP--AISAVMGTERLPFPGIVFDAVHCARCRVPWHI---EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 435 l~--~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~---d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+. +.+...|..+++. +||.|+|.. +..|. +...+|..+.|+|||||++++..
T Consensus 110 l~~~v~v~~~D~~~~~~---~fD~IvSi~--~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 110 LEDRVEVRLQDYRDLPG---KFDRIVSIE--MFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp SSSTEEEEES-GGG------S-SEEEEES--EGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred CCCceEEEEeeccccCC---CCCEEEEEe--chhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 65 5666677776664 899999987 44554 56899999999999999999763
No 38
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.23 E-value=3.2e-12 Score=115.15 Aligned_cols=93 Identities=22% Similarity=0.277 Sum_probs=57.7
Q ss_pred EEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC--CCCCceeEEEEcCCCcccc
Q 003776 394 LDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP--FPGIVFDAVHCARCRVPWH 467 (796)
Q Consensus 394 LDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP--fpd~SFDlVvss~~~l~w~ 467 (796)
||||||+|.++..|+.. +++++|+|+.++..++.++.................+. ...++||+|+++.. ++|.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~v-l~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNV-LHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-T-TS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhh-Hhhh
Confidence 89999999999888764 89999999999977765554433333333333332221 22269999999864 7777
Q ss_pred cchHHHHHHHHhhcCCCcEE
Q 003776 468 IEGGKLLLELNRVLRPGGFF 487 (796)
Q Consensus 468 ~d~~~~L~Ei~RVLKPGG~f 487 (796)
.++..+|+.++++|||||+|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 79999999999999999986
No 39
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.23 E-value=2.6e-10 Score=132.25 Aligned_cols=99 Identities=14% Similarity=0.116 Sum_probs=70.2
Q ss_pred CCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEcCCC
Q 003776 390 TRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARCR 463 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss~~~ 463 (796)
..+|||+|||+|.++..|+.. .|+++|+++.++..|+. .+...++. +.+...+... +++.+.||+|+|+..+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~-N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKS-NAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHH-HHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 468999999999999888753 79999999999988874 44445543 4445555321 2345689999997644
Q ss_pred ccccc---------------------ch----HHHHHHHHhhcCCCcEEEEE
Q 003776 464 VPWHI---------------------EG----GKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 464 l~w~~---------------------d~----~~~L~Ei~RVLKPGG~fv~s 490 (796)
+.... +. ..++.++.++|+|||.|++.
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 43111 01 23567788999999999986
No 40
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.22 E-value=9.3e-11 Score=129.30 Aligned_cols=100 Identities=22% Similarity=0.201 Sum_probs=81.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
++.+|||||||+|.++..+++. .|+++|+++.|+..++.... .. .+.+...+.+.+|+++++||+|+++.. +
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-~~--~i~~i~gD~e~lp~~~~sFDvVIs~~~-L 188 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LK--ECKIIEGDAEDLPFPTDYADRYVSAGS-I 188 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-cc--CCeEEeccHHhCCCCCCceeEEEEcCh-h
Confidence 4679999999999988887653 79999999999888774432 12 245677788889999999999999864 6
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
++..++..+|++++|+|||||.|++..+
T Consensus 189 ~~~~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 189 EYWPDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred hhCCCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 6666889999999999999999987643
No 41
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.22 E-value=3.9e-11 Score=123.03 Aligned_cols=100 Identities=20% Similarity=0.264 Sum_probs=80.0
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCC-CCCC--CCCCceeEEEEc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGT-ERLP--FPGIVFDAVHCA 460 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~-e~LP--fpd~SFDlVvss 460 (796)
...+|||||||+|.++..|+.. .|+++|+++.++..++.... ..++ .+.+.+.++ ..++ +++++||+|+++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~-~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIE-EEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHH-HcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 4679999999999999988763 79999999999988874443 3344 356777777 6776 778899999998
Q ss_pred CCCccccc--------chHHHHHHHHhhcCCCcEEEEE
Q 003776 461 RCRVPWHI--------EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 461 ~~~l~w~~--------d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
++ .+|+. ....+|.+++++|||||+|+++
T Consensus 119 ~~-~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 119 FP-DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA 155 (202)
T ss_pred CC-CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence 65 55543 1468899999999999999987
No 42
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.22 E-value=8.4e-11 Score=125.84 Aligned_cols=142 Identities=15% Similarity=0.242 Sum_probs=105.3
Q ss_pred cccccccccCcccc--cCCCCccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCCh
Q 003776 345 GHQNWVKVTGEYLT--FPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAP 419 (796)
Q Consensus 345 ~~qnW~~~~g~~~~--Fpgggt~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp 419 (796)
.+.-|...+..|.- |+.....+......-++.+.+.+.. +++.+|||||||.|.++.+++++ +|+|+++|+
T Consensus 30 fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L----~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~ 105 (283)
T COG2230 30 FYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGL----KPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSE 105 (283)
T ss_pred HHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCC----CCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCH
Confidence 34455555444442 5565556666666667778777764 67999999999999999999986 799999999
Q ss_pred hhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEcCCCccccc---chHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 420 KDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARCRVPWHI---EGGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 420 ~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~---d~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
.+...++ +.++++|+. +.+...|...+. +.||-|+|.. +..|. +-+.+|..++++|+|||.+++-+...
T Consensus 106 ~Q~~~~~-~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvg--mfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~ 179 (283)
T COG2230 106 EQLAYAE-KRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVG--MFEHVGKENYDDFFKKVYALLKPGGRMLLHSITG 179 (283)
T ss_pred HHHHHHH-HHHHHcCCCcccEEEeccccccc---cccceeeehh--hHHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence 9888887 445567776 455556655554 4499999987 45554 46899999999999999999875444
Q ss_pred CC
Q 003776 495 YQ 496 (796)
Q Consensus 495 ~~ 496 (796)
+.
T Consensus 180 ~~ 181 (283)
T COG2230 180 PD 181 (283)
T ss_pred CC
Confidence 44
No 43
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.20 E-value=9.3e-11 Score=126.44 Aligned_cols=98 Identities=13% Similarity=0.211 Sum_probs=78.7
Q ss_pred CCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcccc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWH 467 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~ 467 (796)
+.+|||||||+|.++.+|+.+ .|+++|+++.++..++ +.+...++.+.....+....++ +++||+|+++.+ +++.
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~-~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~v-l~~l 197 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQ-EIAEKENLNIRTGLYDINSASI-QEEYDFILSTVV-LMFL 197 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHH-HHHHHcCCceEEEEechhcccc-cCCccEEEEcch-hhhC
Confidence 459999999999999999875 8999999999998876 5566677776667777655555 578999999864 4433
Q ss_pred c--chHHHHHHHHhhcCCCcEEEEE
Q 003776 468 I--EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 468 ~--d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
. +...+|.++.|+|+|||++++.
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 2 4578999999999999997654
No 44
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.16 E-value=2.4e-10 Score=116.61 Aligned_cols=108 Identities=20% Similarity=0.364 Sum_probs=82.0
Q ss_pred HHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCce
Q 003776 377 IQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVF 454 (796)
Q Consensus 377 L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SF 454 (796)
+.+.++.+ ++.++||||||.|+.+.+|+++ .|+++|+++..+...+ +.|.+.++++...+.|.....++ +.|
T Consensus 22 v~~a~~~~----~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~-~~a~~~~l~i~~~~~Dl~~~~~~-~~y 95 (192)
T PF03848_consen 22 VLEAVPLL----KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQ-RLAEEEGLDIRTRVADLNDFDFP-EEY 95 (192)
T ss_dssp HHHHCTTS-----SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHH-HHHHHTT-TEEEEE-BGCCBS-T-TTE
T ss_pred HHHHHhhc----CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHhhcCceeEEEEecchhcccc-CCc
Confidence 44555542 3679999999999999999997 8999999998887765 78888999988888887777765 679
Q ss_pred eEEEEcCCCccccc-chHHHHHHHHhhcCCCcEEEEE
Q 003776 455 DAVHCARCRVPWHI-EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 455 DlVvss~~~l~w~~-d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
|+|++...+.+.+. ..+.++..|...|+|||++++.
T Consensus 96 D~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 96 DFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp EEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred CEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 99998652122222 3468899999999999998874
No 45
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.15 E-value=2.7e-10 Score=123.10 Aligned_cols=120 Identities=19% Similarity=0.212 Sum_probs=79.9
Q ss_pred ccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEc
Q 003776 366 FKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVM 442 (796)
Q Consensus 366 F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~ 442 (796)
|..+.......+.+.+..+. .++.+|||+|||+|.++..++.. .|+++|+++.++..++.. +...++.......
T Consensus 138 FgtG~h~tt~l~l~~l~~~~--~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n-~~~n~~~~~~~~~ 214 (288)
T TIGR00406 138 FGTGTHPTTSLCLEWLEDLD--LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKN-AELNQVSDRLQVK 214 (288)
T ss_pred ccCCCCHHHHHHHHHHHhhc--CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHH-HHHcCCCcceEEE
Confidence 44443344444444333221 24689999999999998887764 799999999999888744 4445554222211
Q ss_pred CCCCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 443 GTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 443 d~e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
....+++..+.||+|+++. +. .....++.++.++|||||+|+++..
T Consensus 215 ~~~~~~~~~~~fDlVvan~--~~--~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 215 LIYLEQPIEGKADVIVANI--LA--EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred ecccccccCCCceEEEEec--CH--HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 1112344567899999975 21 1346789999999999999999843
No 46
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.15 E-value=1.8e-10 Score=117.24 Aligned_cols=101 Identities=21% Similarity=0.294 Sum_probs=78.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCC---CCCCceeEEEEc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLP---FPGIVFDAVHCA 460 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LP---fpd~SFDlVvss 460 (796)
...+|||||||+|.++..|+.+ +|+|+|+++.++..++.. +...++. +.+...++..++ +++++||.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~-~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNK-ANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHH-HHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 3569999999999999988875 899999999999888744 3444553 556666665443 566799999998
Q ss_pred CCCcccccch--------HHHHHHHHhhcCCCcEEEEEe
Q 003776 461 RCRVPWHIEG--------GKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 461 ~~~l~w~~d~--------~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+. .+|+... ..+|.++.|+|||||.|++.+
T Consensus 95 ~p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 95 FP-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CC-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 75 6665421 578999999999999999873
No 47
>PRK06922 hypothetical protein; Provisional
Probab=99.14 E-value=1.7e-10 Score=134.99 Aligned_cols=102 Identities=16% Similarity=0.123 Sum_probs=81.4
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC--CCCCceeEEEEcCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP--FPGIVFDAVHCARC 462 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP--fpd~SFDlVvss~~ 462 (796)
++.+|||||||+|.++..|+.+ .|+|+|+++.|+..++.+. ...+....+..++...+| |++++||+|+++.+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl-~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKK-QNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHh-hhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 3679999999999998888753 8999999999998887443 334555566777877787 88899999999864
Q ss_pred Ccccc-------------cchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 463 RVPWH-------------IEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 463 ~l~w~-------------~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+|+. .++..+|++++|+|||||+|++...
T Consensus 497 -LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 -LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred -HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 4432 2457999999999999999999754
No 48
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.12 E-value=1.1e-09 Score=101.36 Aligned_cols=97 Identities=19% Similarity=0.118 Sum_probs=72.9
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCC-CCCCCCceeEEEEcCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTER-LPFPGIVFDAVHCARC 462 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~-LPfpd~SFDlVvss~~ 462 (796)
.+.+|||+|||+|.++..++++ .|+++|+++.++..++.... ..+.. ..+...+... ++....+||+|++..+
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNAR-RFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHH-HhCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence 4579999999999999999874 69999999999888874433 34443 4445455433 4444468999999753
Q ss_pred CcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 463 RVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 463 ~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.. ....++.++.|+|||||+|++.
T Consensus 98 -~~---~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 98 -GG---LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred -ch---hHHHHHHHHHHHcCCCCEEEEE
Confidence 21 3468999999999999999986
No 49
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.11 E-value=1.5e-10 Score=119.48 Aligned_cols=114 Identities=19% Similarity=0.184 Sum_probs=81.6
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCC
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTER 446 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~ 446 (796)
..+...+.+.++. ...++.+|||+|||+|.++..|+.. .|+|+|+++.++..++.+.. ..+. .+.+.+.+...
T Consensus 39 ~~~~~~~~~~l~~--~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~-~~~~~~~i~~~~~d~~~ 115 (219)
T TIGR02021 39 AAMRRKLLDWLPK--DPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQ-GRDVAGNVEFEVNDLLS 115 (219)
T ss_pred HHHHHHHHHHHhc--CCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH-hcCCCCceEEEECChhh
Confidence 3344445555542 0134789999999999999999875 79999999999988875443 3333 45677777766
Q ss_pred CCCCCCceeEEEEcCCCccccc-chHHHHHHHHhhcCCCcEEEEE
Q 003776 447 LPFPGIVFDAVHCARCRVPWHI-EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 447 LPfpd~SFDlVvss~~~l~w~~-d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
++ ++||+|++...+.++.. +...++.++.+++++++++.+.
T Consensus 116 ~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 116 LC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred CC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 65 78999999764223322 4578899999999988777654
No 50
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.11 E-value=3.1e-10 Score=117.05 Aligned_cols=98 Identities=21% Similarity=0.307 Sum_probs=77.2
Q ss_pred EEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEcCCCcc
Q 003776 392 VVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 392 ~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss~~~l~ 465 (796)
+|||||||+|.++..+++. .|+++|+++.++..++... ...++. +.+...+....|++ ++||+|++... ++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~-~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~-l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERI-RALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEV-IH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HhcCCCcceEEEecccccCCCC-CCCCEeehHHH-HH
Confidence 7999999999999888763 6999999998888777443 344443 45666676566665 58999999764 55
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 466 WHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 466 w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+..+...+|.++.++|||||+|++...
T Consensus 79 ~~~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 79 HIKDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred hCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 555889999999999999999998754
No 51
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.10 E-value=3.4e-10 Score=120.94 Aligned_cols=101 Identities=19% Similarity=0.262 Sum_probs=74.1
Q ss_pred CCCEEEEECCCCch----hHHHHhh---------CCeEEEeCChhhHHHHHHHHH---HHcCC-----------------
Q 003776 389 RTRVVLDVGCGVAS----FGGFLFD---------RGVLTMSFAPKDEHEAQVQFA---LERGI----------------- 435 (796)
Q Consensus 389 ~~~~VLDIGCGtG~----~a~~La~---------~~V~gvDiSp~dl~~A~~q~A---~ergl----------------- 435 (796)
.+.+|||+|||+|. ++..|++ ..|+|+|+++.++..|+...- .-+++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 35799999999995 4544443 269999999999988874310 00111
Q ss_pred -------CeEEEEcCCCCCCCCCCceeEEEEcCCCccccc--chHHHHHHHHhhcCCCcEEEEE
Q 003776 436 -------PAISAVMGTERLPFPGIVFDAVHCARCRVPWHI--EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 436 -------~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~--d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.+.+.+.+...++++.+.||+|+|..+ +++.. +...+|.+++++|+|||+|++.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnv-l~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNV-LIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechh-HHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 245667777777777889999999764 44443 3458999999999999999986
No 52
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.10 E-value=3.5e-09 Score=109.18 Aligned_cols=103 Identities=26% Similarity=0.266 Sum_probs=81.5
Q ss_pred CCCEEEEECCCCchhHHHHhh-----CCeEEEeCChhhHHHHHHHHHHHc-CCCeEEEEcCCCCCCCCCCceeEEEEcCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALER-GIPAISAVMGTERLPFPGIVFDAVHCARC 462 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~-----~~V~gvDiSp~dl~~A~~q~A~er-gl~~~~~v~d~e~LPfpd~SFDlVvss~~ 462 (796)
++.+|||+|||+|.++..++. ..++++|+++.++..++....... ...+.+...+...++++.++||+|+++..
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 467999999999999888865 379999999988887774443211 22356677777778887889999999874
Q ss_pred CcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 463 RVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 463 ~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+++..++..+|.++.++|+|||++++...
T Consensus 131 -l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 131 -LRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred -cccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 66666889999999999999999987644
No 53
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.08 E-value=5e-10 Score=115.70 Aligned_cols=92 Identities=15% Similarity=0.100 Sum_probs=69.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC--------CCCCce
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP--------FPGIVF 454 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP--------fpd~SF 454 (796)
+++.+|||||||+|.++..|+++ .|+++|+++ +. ....+.++.+|....+ +.+++|
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~----------~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD----------PIVGVDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc----------CCCCcEEEecCCCChHHHHHHHHHhCCCCC
Confidence 35779999999999999988764 699999987 21 1123466777776643 667899
Q ss_pred eEEEEcCCCcccccch-----------HHHHHHHHhhcCCCcEEEEEe
Q 003776 455 DAVHCARCRVPWHIEG-----------GKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 455 DlVvss~~~l~w~~d~-----------~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
|+|+|+.+ .+|+.++ ..+|.++.|+|||||.|++..
T Consensus 119 D~V~S~~~-~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 119 QVVMSDMA-PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred CEEecCCC-CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 99999864 5554321 358899999999999999873
No 54
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.08 E-value=5e-10 Score=123.88 Aligned_cols=112 Identities=16% Similarity=0.144 Sum_probs=82.7
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP 448 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP 448 (796)
-...+.+.++. ....+|||||||+|.++..++++ .|+++|+++.++..++... ...++...+...+...
T Consensus 184 gt~lLl~~l~~----~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl-~~n~l~~~~~~~D~~~-- 256 (342)
T PRK09489 184 GSQLLLSTLTP----HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATL-AANGLEGEVFASNVFS-- 256 (342)
T ss_pred HHHHHHHhccc----cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCEEEEccccc--
Confidence 34566666664 22458999999999999998864 6999999999998887444 4455665555555422
Q ss_pred CCCCceeEEEEcCCCccccc-----chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 449 FPGIVFDAVHCARCRVPWHI-----EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 449 fpd~SFDlVvss~~~l~w~~-----d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
...+.||+|+|+.. +|+.. ....+|.++.++|||||.|++...
T Consensus 257 ~~~~~fDlIvsNPP-FH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 257 DIKGRFDMIISNPP-FHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ccCCCccEEEECCC-ccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 23578999999875 55422 347889999999999999998754
No 55
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.08 E-value=2.2e-10 Score=117.06 Aligned_cols=141 Identities=21% Similarity=0.267 Sum_probs=104.0
Q ss_pred HHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCC
Q 003776 376 FIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPG 451 (796)
Q Consensus 376 ~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd 451 (796)
.|..+++. ...++|.|||||+|..+..|+++ .|+|+|.|+.|+..|+ .+.+...+..+|....- |.
T Consensus 21 dLla~Vp~----~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa-----~rlp~~~f~~aDl~~w~-p~ 90 (257)
T COG4106 21 DLLARVPL----ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAA-----QRLPDATFEEADLRTWK-PE 90 (257)
T ss_pred HHHhhCCc----cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHH-----HhCCCCceecccHhhcC-CC
Confidence 35556664 45789999999999999999986 8999999999886664 56777888888876664 45
Q ss_pred CceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHhhcceeehhhhhhcccee
Q 003776 452 IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKDTINKVG 531 (796)
Q Consensus 452 ~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~El~~~~~~le~l~~~~~W~~v~~~~~~l~dvG 531 (796)
..+|+++++. .+||.+|-..+|..+...|.|||.|.+.++...+. + ....|.+.+... ++.+.+.+.|
T Consensus 91 ~~~dllfaNA-vlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~de-p----sH~~mr~~A~~~------p~~~~l~~~~ 158 (257)
T COG4106 91 QPTDLLFANA-VLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDE-P----SHRLMRETADEA------PFAQELGGRG 158 (257)
T ss_pred Cccchhhhhh-hhhhccccHHHHHHHHHhhCCCceEEEECCCccCc-h----hHHHHHHHHhcC------chhhhhCccc
Confidence 6799999986 59999999999999999999999999885433332 1 123344444422 3444555555
Q ss_pred EEEEEecCC
Q 003776 532 IAVYRKPTS 540 (796)
Q Consensus 532 ~~L~rkgf~ 540 (796)
+ .|++.-
T Consensus 159 ~--~r~~v~ 165 (257)
T COG4106 159 L--TRAPLP 165 (257)
T ss_pred c--ccCCCC
Confidence 5 365554
No 56
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.07 E-value=1.8e-09 Score=110.16 Aligned_cols=101 Identities=28% Similarity=0.299 Sum_probs=80.8
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCR 463 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~ 463 (796)
++.+|||+|||+|.++..++.. .++++|+++.++..++.... ....+.+...+...++++.++||+|+++..
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~- 115 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFEDNSFDAVTIAFG- 115 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCCCcEEEEEEeee-
Confidence 5789999999999999888763 69999999988776654433 222356667777788888889999999864
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 464 VPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 464 l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+++..++..+|+++.++|+|||+|++...
T Consensus 116 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 116 LRNVTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred eCCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 66666889999999999999999998643
No 57
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.07 E-value=5e-10 Score=111.71 Aligned_cols=111 Identities=20% Similarity=0.267 Sum_probs=79.5
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCC
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLP 448 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LP 448 (796)
...|.+.++.. ...+|||+|||+|.++..|+.+ .|+++|+++..+..++ +.+...++. +.+...|... +
T Consensus 20 t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~-~n~~~n~~~~v~~~~~d~~~-~ 93 (170)
T PF05175_consen 20 TRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAK-RNAERNGLENVEVVQSDLFE-A 93 (170)
T ss_dssp HHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHH-HHHHHTTCTTEEEEESSTTT-T
T ss_pred HHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH-HHHHhcCccccccccccccc-c
Confidence 34556655541 4779999999999999999875 5999999999888776 455556666 5566666422 2
Q ss_pred CCCCceeEEEEcCCCcccccc-----hHHHHHHHHhhcCCCcEEEEEe
Q 003776 449 FPGIVFDAVHCARCRVPWHIE-----GGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 449 fpd~SFDlVvss~~~l~w~~d-----~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
++...||+|+|+.. ++...+ ...++.+..+.|||||.|++..
T Consensus 94 ~~~~~fD~Iv~NPP-~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 94 LPDGKFDLIVSNPP-FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp CCTTCEEEEEE----SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccceeEEEEccc-hhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 33689999999874 332222 3678899999999999997753
No 58
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.05 E-value=2.3e-09 Score=107.40 Aligned_cols=99 Identities=18% Similarity=0.152 Sum_probs=74.2
Q ss_pred CCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcccc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWH 467 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~ 467 (796)
+.+|||+|||+|.++..++.+ .|+++|+++.++..++.... ..++.+.+...+....+ .++||+|+++..+++..
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAK-LNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-HcCCceEEEEccccccc--CCcccEEEECCCCCCCc
Confidence 568999999999999999876 69999999999888874443 44555566666654433 35899999986433221
Q ss_pred cc--------------------hHHHHHHHHhhcCCCcEEEEEe
Q 003776 468 IE--------------------GGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 468 ~d--------------------~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.. ...+|.++.|+|||||.|++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 10 2467999999999999999874
No 59
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.05 E-value=1.1e-09 Score=123.05 Aligned_cols=113 Identities=19% Similarity=0.316 Sum_probs=82.8
Q ss_pred ccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCC
Q 003776 368 NGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT 444 (796)
Q Consensus 368 ~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~ 444 (796)
......++.+.+.+.. .++.+|||||||+|.++..++++ .|+++|+++.++..++.+. .++.+.+...+.
T Consensus 150 ~Aq~~k~~~l~~~l~l----~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~---~~l~v~~~~~D~ 222 (383)
T PRK11705 150 EAQEAKLDLICRKLQL----KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERC---AGLPVEIRLQDY 222 (383)
T ss_pred HHHHHHHHHHHHHhCC----CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---ccCeEEEEECch
Confidence 3334445566666543 45789999999999999988864 7999999999887776433 244455566665
Q ss_pred CCCCCCCCceeEEEEcCCCccccc--chHHHHHHHHhhcCCCcEEEEEe
Q 003776 445 ERLPFPGIVFDAVHCARCRVPWHI--EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 445 e~LPfpd~SFDlVvss~~~l~w~~--d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
..+ +++||+|++... +++.. +...+|.++.|+|||||+|++..
T Consensus 223 ~~l---~~~fD~Ivs~~~-~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 223 RDL---NGQFDRIVSVGM-FEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred hhc---CCCCCEEEEeCc-hhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 554 478999999863 33322 45789999999999999999874
No 60
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.03 E-value=1.4e-09 Score=116.89 Aligned_cols=109 Identities=26% Similarity=0.368 Sum_probs=81.9
Q ss_pred HHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHc-CCCeE-EEE-cCCCCCC
Q 003776 375 DFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALER-GIPAI-SAV-MGTERLP 448 (796)
Q Consensus 375 d~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~er-gl~~~-~~v-~d~e~LP 448 (796)
+++..+++.+ .+++|||||||.|+++-.++.+ .|+|+|.++..... -+++++. |.... +.. .+.+.||
T Consensus 105 ~rl~p~l~~L----~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~Q--F~~i~~~lg~~~~~~~lplgvE~Lp 178 (315)
T PF08003_consen 105 DRLLPHLPDL----KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQ--FEAIKHFLGQDPPVFELPLGVEDLP 178 (315)
T ss_pred HHHHhhhCCc----CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHH--HHHHHHHhCCCccEEEcCcchhhcc
Confidence 5566777543 4889999999999999998875 68999988754433 2333322 23322 233 4678999
Q ss_pred CCCCceeEEEEcCCCccccc-chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 449 FPGIVFDAVHCARCRVPWHI-EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 449 fpd~SFDlVvss~~~l~w~~-d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
. .+.||+|+|.. |.+|. +|-..|.+++..|+|||.+++.+.
T Consensus 179 ~-~~~FDtVF~MG--VLYHrr~Pl~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 179 N-LGAFDTVFSMG--VLYHRRSPLDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred c-cCCcCEEEEee--ehhccCCHHHHHHHHHHhhCCCCEEEEEEe
Confidence 8 78999999986 66665 999999999999999999998743
No 61
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.03 E-value=2e-09 Score=108.92 Aligned_cols=94 Identities=19% Similarity=0.171 Sum_probs=73.8
Q ss_pred CCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
+.+|||+|||+|.++..|+.. .|+++|+++.++..++ +.+.+.++. +.+...+...++ ..++||+|+|.. +
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~-~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~--~ 118 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLR-EVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA--L 118 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHH-HHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh--h
Confidence 679999999999988887642 6999999999987776 444455654 566777776664 357899999864 3
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+ +...++..+.++|||||.|++.
T Consensus 119 ~---~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 119 A---SLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred h---CHHHHHHHHHHhcCCCCEEEEE
Confidence 2 4667889999999999999976
No 62
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.03 E-value=2.1e-09 Score=120.16 Aligned_cols=111 Identities=17% Similarity=0.242 Sum_probs=79.3
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCC----CeEEEEcCCC
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGI----PAISAVMGTE 445 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl----~~~~~v~d~e 445 (796)
.+++.+.++. ....+|||||||+|.++..|+++ .|+++|+++.++..++...+. .+. .+.+...+..
T Consensus 217 trllL~~lp~----~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~-n~~~~~~~v~~~~~D~l 291 (378)
T PRK15001 217 ARFFMQHLPE----NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVET-NMPEALDRCEFMINNAL 291 (378)
T ss_pred HHHHHHhCCc----ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-cCcccCceEEEEEcccc
Confidence 4567777775 22469999999999999998864 799999999998888755433 332 2344444432
Q ss_pred CCCCCCCceeEEEEcCCCccccc-----chHHHHHHHHhhcCCCcEEEEEe
Q 003776 446 RLPFPGIVFDAVHCARCRVPWHI-----EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 446 ~LPfpd~SFDlVvss~~~l~w~~-----d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
. .++..+||+|+|+.. +|... ....+|.++.++|+|||.|++..
T Consensus 292 ~-~~~~~~fDlIlsNPP-fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 292 S-GVEPFRFNAVLCNPP-FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred c-cCCCCCEEEEEECcC-cccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 1 234468999999865 33221 12578999999999999999884
No 63
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.02 E-value=1.4e-09 Score=111.43 Aligned_cols=96 Identities=23% Similarity=0.353 Sum_probs=77.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCC-CCCCCCCCceeEEEEcCCCcc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT-ERLPFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~-e~LPfpd~SFDlVvss~~~l~ 465 (796)
...-|||||||+|..+..|... ..+|+|+|+.|++.|+.+. +...+..+|+ +-+||.+++||.|++.. +++
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e-----~egdlil~DMG~GlpfrpGtFDg~ISIS-AvQ 123 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERE-----LEGDLILCDMGEGLPFRPGTFDGVISIS-AVQ 123 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhh-----hhcCeeeeecCCCCCCCCCccceEEEee-eee
Confidence 4789999999999999988764 7899999999998887422 2224455554 88999999999999986 488
Q ss_pred cccc-------h----HHHHHHHHhhcCCCcEEEEE
Q 003776 466 WHIE-------G----GKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 466 w~~d-------~----~~~L~Ei~RVLKPGG~fv~s 490 (796)
|..+ | ..+|..++.+|++|+..++.
T Consensus 124 WLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 124 WLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred eecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 8641 2 35678899999999999987
No 64
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.02 E-value=1.7e-09 Score=117.19 Aligned_cols=120 Identities=23% Similarity=0.266 Sum_probs=86.3
Q ss_pred ccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEE
Q 003776 364 TQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISA 440 (796)
Q Consensus 364 t~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~ 440 (796)
..|..|.+.-...+.+.+..+. .++.+|||+|||+|.++...++. .|+++|++|..+..++ ..+...++...+.
T Consensus 138 ~AFGTG~H~TT~lcl~~l~~~~--~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~-~N~~~N~~~~~~~ 214 (295)
T PF06325_consen 138 MAFGTGHHPTTRLCLELLEKYV--KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAAR-ENAELNGVEDRIE 214 (295)
T ss_dssp SSS-SSHCHHHHHHHHHHHHHS--STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHH-HHHHHTT-TTCEE
T ss_pred CcccCCCCHHHHHHHHHHHHhc--cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHH-HHHHHcCCCeeEE
Confidence 5688888888777777776543 45789999999999887776653 7999999998887777 6667777766554
Q ss_pred EcCCCCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 441 VMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 441 v~d~e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+..... .....||+|++|. +. .-+..++..+.++|+|||+|++|..
T Consensus 215 v~~~~~--~~~~~~dlvvANI--~~--~vL~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 215 VSLSED--LVEGKFDLVVANI--LA--DVLLELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp ESCTSC--TCCS-EEEEEEES---H--HHHHHHHHHCHHHEEEEEEEEEEEE
T ss_pred EEEecc--cccccCCEEEECC--CH--HHHHHHHHHHHHhhCCCCEEEEccc
Confidence 443222 3348899999986 21 1345777889999999999999854
No 65
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.02 E-value=1.9e-09 Score=111.77 Aligned_cols=102 Identities=16% Similarity=-0.006 Sum_probs=74.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHH------------HcCCCeEEEEcCCCCCCCC-CCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFAL------------ERGIPAISAVMGTERLPFP-GIV 453 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~------------ergl~~~~~v~d~e~LPfp-d~S 453 (796)
++.+|||+|||.|..+.+|+++ .|+|+|+|+..+..+..+... .++..+.+.++|...++.. ...
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~ 113 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGP 113 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCC
Confidence 4679999999999999999987 899999999888764321110 0233466778887666642 357
Q ss_pred eeEEEEcCCCccccc-chHHHHHHHHhhcCCCcEEEEE
Q 003776 454 FDAVHCARCRVPWHI-EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 454 FDlVvss~~~l~w~~-d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
||+|+-..++++... ....++..|.++|||||++++.
T Consensus 114 fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 114 VDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred cCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 999998654333322 3367899999999999976554
No 66
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=9e-10 Score=118.87 Aligned_cols=120 Identities=24% Similarity=0.343 Sum_probs=85.2
Q ss_pred cccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEE
Q 003776 365 QFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAV 441 (796)
Q Consensus 365 ~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v 441 (796)
.|..|.+.-...+.+.+..+. .++++|||+|||+|.++.+.++. .|+|+|++|..+..++ ..++..++......
T Consensus 140 AFGTG~HpTT~lcL~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~-eNa~~N~v~~~~~~ 216 (300)
T COG2264 140 AFGTGTHPTTSLCLEALEKLL--KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAAR-ENARLNGVELLVQA 216 (300)
T ss_pred ccCCCCChhHHHHHHHHHHhh--cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHH-HHHHHcCCchhhhc
Confidence 466665555555555555433 36899999999999988887764 7999999998888777 56777777631222
Q ss_pred cCCCCCCCCC-CceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 442 MGTERLPFPG-IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 442 ~d~e~LPfpd-~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.....+..+. +.||+|++|. +- .-...+..++.+.|||||+|++|.
T Consensus 217 ~~~~~~~~~~~~~~DvIVANI--LA--~vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 217 KGFLLLEVPENGPFDVIVANI--LA--EVLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred ccccchhhcccCcccEEEehh--hH--HHHHHHHHHHHHHcCCCceEEEEe
Confidence 2222233344 5899999985 21 123577888999999999999995
No 67
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.02 E-value=1.7e-09 Score=111.41 Aligned_cols=96 Identities=13% Similarity=0.047 Sum_probs=71.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
++.+|||||||+|.++..|+.. .++|+|+++.++..|+.. ...+.+...+... |+++++||+|+++.++.
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~-----~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~ 116 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAY-----LPNINIIQGSLFD-PFKDNFFDLVLTKGVLI 116 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhh-----CCCCcEEEeeccC-CCCCCCEEEEEECChhh
Confidence 4678999999999999988753 799999999988776532 2234455666655 88999999999987422
Q ss_pred cccc-chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 465 PWHI-EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 465 ~w~~-d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
|..+ +...++++++|++ ++++++...
T Consensus 117 hl~p~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 117 HINPDNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred hCCHHHHHHHHHHHHhhc--CcEEEEEEe
Confidence 3222 3578899999998 567776643
No 68
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.01 E-value=3.4e-09 Score=108.97 Aligned_cols=107 Identities=18% Similarity=0.152 Sum_probs=76.9
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh-----CCeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGT 444 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~-----~~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~ 444 (796)
.....+.+.+.. .++.+|||||||+|.++..|++ ..|+++|+++.++..++.. ....++. +.+...+.
T Consensus 59 ~~~~~~~~~l~~----~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~-l~~~~~~~~v~~~~~d~ 133 (205)
T PRK13944 59 HMVAMMCELIEP----RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQN-IERLGYWGVVEVYHGDG 133 (205)
T ss_pred HHHHHHHHhcCC----CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHH-HHHcCCCCcEEEEECCc
Confidence 344555555542 3568999999999999988875 2799999999998877643 3445543 45666676
Q ss_pred CCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 445 ERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 445 e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
........+||+|++... +. .+..++.++|+|||+|++.
T Consensus 134 ~~~~~~~~~fD~Ii~~~~-~~------~~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 134 KRGLEKHAPFDAIIVTAA-AS------TIPSALVRQLKDGGVLVIP 172 (205)
T ss_pred ccCCccCCCccEEEEccC-cc------hhhHHHHHhcCcCcEEEEE
Confidence 544434578999999863 32 2335788999999999975
No 69
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.01 E-value=1.2e-09 Score=110.88 Aligned_cols=105 Identities=28% Similarity=0.372 Sum_probs=78.5
Q ss_pred HHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCC-CCC-CC
Q 003776 375 DFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT-ERL-PF 449 (796)
Q Consensus 375 d~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~-e~L-Pf 449 (796)
+.|.++++ ++.+|||||||.|.+..+|.+. ...|+++++. .+..+.++|+++ ++.|. ..| .|
T Consensus 5 ~~I~~~I~------pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~-----~v~~cv~rGv~V--iq~Dld~gL~~f 71 (193)
T PF07021_consen 5 QIIAEWIE------PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPD-----NVAACVARGVSV--IQGDLDEGLADF 71 (193)
T ss_pred HHHHHHcC------CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHH-----HHHHHHHcCCCE--EECCHHHhHhhC
Confidence 34556554 4899999999999999999874 5677877764 345667889876 44443 445 49
Q ss_pred CCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 003776 450 PGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQK 497 (796)
Q Consensus 450 pd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~ 497 (796)
++++||.|+++.+ ++...+|..+|.|+.|+ |...+++ .|.+.+
T Consensus 72 ~d~sFD~VIlsqt-LQ~~~~P~~vL~EmlRV---gr~~IVs-FPNFg~ 114 (193)
T PF07021_consen 72 PDQSFDYVILSQT-LQAVRRPDEVLEEMLRV---GRRAIVS-FPNFGH 114 (193)
T ss_pred CCCCccEEehHhH-HHhHhHHHHHHHHHHHh---cCeEEEE-ecChHH
Confidence 9999999999985 77677899999999777 5567766 444443
No 70
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.00 E-value=3.2e-09 Score=112.40 Aligned_cols=93 Identities=27% Similarity=0.339 Sum_probs=68.1
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~ 465 (796)
++.+|||+|||+|.++..++.. .|+++|+++.++..++.. +...++..... ++..+.+||+|+++. ..
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n-~~~~~~~~~~~------~~~~~~~fD~Vvani--~~ 189 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAAREN-AELNGVELNVY------LPQGDLKADVIVANI--LA 189 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHH-HHHcCCCceEE------EccCCCCcCEEEEcC--cH
Confidence 4789999999999988877764 599999999999888744 44445421111 122222799999975 21
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 466 WHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 466 w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
.....++.++.++|||||+|+++..
T Consensus 190 --~~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 190 --NPLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred --HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 1246788999999999999999843
No 71
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.00 E-value=2.9e-09 Score=119.04 Aligned_cols=100 Identities=15% Similarity=0.242 Sum_probs=80.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCC--CCCCCceeEEEEcC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERL--PFPGIVFDAVHCAR 461 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~L--Pfpd~SFDlVvss~ 461 (796)
.+..+||||||+|.++..|+.+ .++|+|+++.++..+. +.+...++. +.+...|+..+ ++++++||.|++++
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~-~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVL-KQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHH-HHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 4569999999999999999874 8999999999998887 444556664 45556666443 57889999999987
Q ss_pred CCcccccch------HHHHHHHHhhcCCCcEEEEE
Q 003776 462 CRVPWHIEG------GKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 462 ~~l~w~~d~------~~~L~Ei~RVLKPGG~fv~s 490 (796)
. .+|.... ..+|.++.|+|+|||.|.+.
T Consensus 201 P-dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 201 P-VPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred C-CCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 5 7886433 58999999999999999987
No 72
>PRK14967 putative methyltransferase; Provisional
Probab=99.00 E-value=1e-08 Score=106.50 Aligned_cols=100 Identities=21% Similarity=0.155 Sum_probs=73.8
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~ 465 (796)
++.+|||+|||+|.++..++.. .|+++|+++.++..++ +.+...++.+.+...+... .+++++||+|+++..++.
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~-~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSAR-LNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVP 113 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHH-HHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCC
Confidence 4679999999999999888764 7899999999888776 3444455555556666533 345678999999854332
Q ss_pred cccc--------------------hHHHHHHHHhhcCCCcEEEEE
Q 003776 466 WHIE--------------------GGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 466 w~~d--------------------~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.... ...+|.++.++|||||.|++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 2111 245778899999999999975
No 73
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.00 E-value=7.3e-09 Score=104.51 Aligned_cols=95 Identities=17% Similarity=0.086 Sum_probs=71.0
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCCCCCceeEEEEcCCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCARCR 463 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPfpd~SFDlVvss~~~ 463 (796)
++.+|||||||+|.++..++++ +|+++|+++.++..++... ...++. +.+...+. ..+++ +.||+|++...
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~-~~~~~~~i~~~~~d~-~~~~~-~~~D~v~~~~~- 106 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENR-QRFGCGNIDIIPGEA-PIELP-GKADAIFIGGS- 106 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHhCCCCeEEEecCc-hhhcC-cCCCEEEECCC-
Confidence 4779999999999999988763 7999999999988887443 334443 34444443 23443 57999999752
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 464 VPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 464 l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
. .....++..+.++|+|||+|++.
T Consensus 107 ~---~~~~~~l~~~~~~Lk~gG~lv~~ 130 (187)
T PRK08287 107 G---GNLTAIIDWSLAHLHPGGRLVLT 130 (187)
T ss_pred c---cCHHHHHHHHHHhcCCCeEEEEE
Confidence 1 23567899999999999999986
No 74
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.98 E-value=5.2e-10 Score=117.39 Aligned_cols=97 Identities=25% Similarity=0.294 Sum_probs=73.3
Q ss_pred CCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHH----cCCC--eEEEEcCCCCCCCCCCceeEEEEcC
Q 003776 390 TRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALE----RGIP--AISAVMGTERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~e----rgl~--~~~~v~d~e~LPfpd~SFDlVvss~ 461 (796)
+++|||+|||+|.++..|++. .|+|+|++..++..|+...+.. .++. +.+...+.+.+. +.||+|+|+.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHH
Confidence 578999999999999999974 9999999999998887552211 1111 112223334433 3499999998
Q ss_pred CCccccc-chHHHHHHHHhhcCCCcEEEEEe
Q 003776 462 CRVPWHI-EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 462 ~~l~w~~-d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+..|. |+..++.-+.+.|||||.+++++
T Consensus 167 --vleHV~dp~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 167 --VLEHVKDPQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred --HHHHHhCHHHHHHHHHHHhCCCCceEeee
Confidence 45555 99999999999999999999883
No 75
>PRK06202 hypothetical protein; Provisional
Probab=98.97 E-value=3.2e-09 Score=110.69 Aligned_cols=97 Identities=20% Similarity=0.233 Sum_probs=71.7
Q ss_pred CCCCEEEEECCCCchhHHHHhh--------CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFD--------RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHC 459 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~--------~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvs 459 (796)
.++.+|||||||+|.++..|+. .+|+|+|+++.|+..++... ...++ .+.+.+...+++++++||+|+|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~-~~~~~--~~~~~~~~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP-RRPGV--TFRQAVSDELVAEGERFDVVTS 135 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc-ccCCC--eEEEEecccccccCCCccEEEE
Confidence 3467999999999999888764 27999999999987776432 22233 3444555667777889999999
Q ss_pred cCCCcccccch--HHHHHHHHhhcCCCcEEEEE
Q 003776 460 ARCRVPWHIEG--GKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 460 s~~~l~w~~d~--~~~L~Ei~RVLKPGG~fv~s 490 (796)
+.+ +|+..+. ..+|+++.|+++ |.+++.
T Consensus 136 ~~~-lhh~~d~~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 136 NHF-LHHLDDAEVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred CCe-eecCChHHHHHHHHHHHHhcC--eeEEEe
Confidence 985 6655543 579999999998 455544
No 76
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.97 E-value=1.7e-09 Score=110.05 Aligned_cols=111 Identities=22% Similarity=0.345 Sum_probs=76.4
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF 449 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPf 449 (796)
+|...+...||. ...+++||+|||.|.++..|+.+ .++++|+++..+..|+.+.+.. ..+.+.+.+.... .
T Consensus 30 K~~~~l~aaLp~----~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~--~~V~~~~~dvp~~-~ 102 (201)
T PF05401_consen 30 KYRATLLAALPR----RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGL--PHVEWIQADVPEF-W 102 (201)
T ss_dssp HHHHHHHHHHTT----SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT---
T ss_pred HHHHHHHHhcCc----cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCC--CCeEEEECcCCCC-C
Confidence 344444445564 45689999999999999999987 9999999998887776444322 2356666665433 5
Q ss_pred CCCceeEEEEcCCCccccc----chHHHHHHHHhhcCCCcEEEEEe
Q 003776 450 PGIVFDAVHCARCRVPWHI----EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 450 pd~SFDlVvss~~~l~w~~----d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
|.+.||+||++. +.+.. ++..++..+...|+|||.|++..
T Consensus 103 P~~~FDLIV~SE--VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 103 PEGRFDLIVLSE--VLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp -SS-EEEEEEES---GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCeeEEEEeh--HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 778999999987 33333 34678999999999999999874
No 77
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.97 E-value=4.2e-09 Score=109.38 Aligned_cols=113 Identities=20% Similarity=0.320 Sum_probs=83.7
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC-CC
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP-FP 450 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP-fp 450 (796)
+..+...+.. .++.+|||||||+|.++..+.+. .++++|+++.++..++...+ ..+..+.+...+...++ ..
T Consensus 37 ~~~l~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~ 111 (233)
T PRK05134 37 LNYIREHAGG----LFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHAL-ESGLKIDYRQTTAEELAAEH 111 (233)
T ss_pred HHHHHHhccC----CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHH-HcCCceEEEecCHHHhhhhc
Confidence 4445444432 34779999999999999888765 79999999988877764433 33445555666655544 34
Q ss_pred CCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 451 GIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 451 d~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
.+.||+|+++.. +++..++..+|..+.++|+|||+|+++..
T Consensus 112 ~~~fD~Ii~~~~-l~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 112 PGQFDVVTCMEM-LEHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred CCCccEEEEhhH-hhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 578999999864 55555888999999999999999998743
No 78
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=2.4e-09 Score=115.23 Aligned_cols=130 Identities=21% Similarity=0.269 Sum_probs=90.1
Q ss_pred ccccCCCCccccccHHHH-HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHH
Q 003776 356 YLTFPGGGTQFKNGALHY-IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFA 430 (796)
Q Consensus 356 ~~~Fpgggt~F~~~a~~y-id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A 430 (796)
.+.|......|..+...+ .++|.+.++. ....+|||+|||.|.++..|++. .++.+|++...+..++.. +
T Consensus 128 ~~~~~t~pGVFS~~~lD~GS~lLl~~l~~----~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~N-l 202 (300)
T COG2813 128 ELTFKTLPGVFSRDKLDKGSRLLLETLPP----DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKN-L 202 (300)
T ss_pred ceEEEeCCCCCcCCCcChHHHHHHHhCCc----cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHh-H
Confidence 344444444565544333 5778888886 23459999999999999999875 799999999888777744 4
Q ss_pred HHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcccccc-h----HHHHHHHHhhcCCCcEEEEEeC
Q 003776 431 LERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHIE-G----GKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 431 ~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~d-~----~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
...++....+..+....+..+ .||+|+|+.. +|--.+ . ..+|.+..+.|++||.|.+...
T Consensus 203 ~~N~~~~~~v~~s~~~~~v~~-kfd~IisNPP-fh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 203 AANGVENTEVWASNLYEPVEG-KFDLIISNPP-FHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred HHcCCCccEEEEecccccccc-cccEEEeCCC-ccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 445555433333333444444 8999999974 332221 1 3788999999999999998866
No 79
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.96 E-value=5.1e-09 Score=107.75 Aligned_cols=101 Identities=21% Similarity=0.297 Sum_probs=79.0
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCCCCCCCC-CCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTERLPFP-GIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~e~LPfp-d~SFDlVvss~~~l 464 (796)
.+.+|||+|||+|.++..+++. .++++|+++.++..++.... ..++ .+.+...+...++.. .++||+|++... +
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~-l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAK-KDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV-L 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH-HcCCCceEEEeCCHHHhhcCCCCCccEEEehhH-H
Confidence 3679999999999999888764 79999999998887774433 3444 355666666555544 378999999864 5
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
++..++..+|.++.++|+|||+++++.
T Consensus 123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred HhCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 555688999999999999999999874
No 80
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.95 E-value=5.6e-09 Score=108.00 Aligned_cols=107 Identities=18% Similarity=0.203 Sum_probs=77.7
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTE 445 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e 445 (796)
.....+.+.+.. .++.+|||||||+|.++..|+.. .|+++|+++.++..++... ...++. +.+...+..
T Consensus 63 ~~~~~~~~~l~~----~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l-~~~g~~~v~~~~gd~~ 137 (212)
T PRK13942 63 HMVAIMCELLDL----KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTL-KKLGYDNVEVIVGDGT 137 (212)
T ss_pred HHHHHHHHHcCC----CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCCeEEEECCcc
Confidence 444555565543 35789999999999999887753 7999999999988887444 344553 566667765
Q ss_pred CCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 446 RLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 446 ~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
..+.+.+.||+|++..+ ++ .+...+.+.|||||+|++.
T Consensus 138 ~~~~~~~~fD~I~~~~~-~~------~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 138 LGYEENAPYDRIYVTAA-GP------DIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred cCCCcCCCcCEEEECCC-cc------cchHHHHHhhCCCcEEEEE
Confidence 55556688999999753 32 2334677899999999975
No 81
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.95 E-value=6e-09 Score=107.68 Aligned_cols=106 Identities=19% Similarity=0.208 Sum_probs=76.4
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--C---eEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCC
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--G---VLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTER 446 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~---V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~ 446 (796)
....+.+.+.. .++.+|||||||+|.++..|++. . |+++|+++.++..|+ +.+.+.++. +.+...+...
T Consensus 65 ~~~~~~~~l~~----~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~-~~~~~~g~~~v~~~~~d~~~ 139 (215)
T TIGR00080 65 MVAMMTELLEL----KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAE-RRLRKLGLDNVIVIVGDGTQ 139 (215)
T ss_pred HHHHHHHHhCC----CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHCCCCCeEEEECCccc
Confidence 34455555542 45789999999999999988864 3 999999999988887 444455554 5556666544
Q ss_pred CCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 447 LPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 447 LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.......||+|++..+ . ..+...+.+.|+|||+|++.
T Consensus 140 ~~~~~~~fD~Ii~~~~-~------~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 140 GWEPLAPYDRIYVTAA-G------PKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred CCcccCCCCEEEEcCC-c------ccccHHHHHhcCcCcEEEEE
Confidence 4334468999998753 2 23446688999999999976
No 82
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.94 E-value=8.4e-09 Score=112.20 Aligned_cols=106 Identities=14% Similarity=0.193 Sum_probs=73.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHc-CCCeEEEEcCCCC-CCCCCCc---eeEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALER-GIPAISAVMGTER-LPFPGIV---FDAVH 458 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~er-gl~~~~~v~d~e~-LPfpd~S---FDlVv 458 (796)
++.+|||+|||+|..+..|+++ .|+++|+|+.|+..++.+..... ++.+..+++|... ++++... ..+++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 3578999999999998888754 79999999999999886654432 3555566777644 4444332 23333
Q ss_pred EcCCCccccc--chHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 459 CARCRVPWHI--EGGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 459 ss~~~l~w~~--d~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
.....+++.. +...+|++++++|+|||+|+|.....
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 2222244333 45688999999999999999875433
No 83
>PRK14968 putative methyltransferase; Provisional
Probab=98.91 E-value=2.7e-08 Score=99.06 Aligned_cols=101 Identities=22% Similarity=0.230 Sum_probs=73.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC---eEEEEcCCCCCCCCCCceeEEEEcCCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP---AISAVMGTERLPFPGIVFDAVHCARCR 463 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~---~~~~v~d~e~LPfpd~SFDlVvss~~~ 463 (796)
++.+|||+|||+|.++..|+.+ +|+++|+++.++..++... ...+.. +.+...+... ++++..||+|+++..+
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~-~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNA-KLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPY 100 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHH-HHcCCCCcceEEEeccccc-cccccCceEEEECCCc
Confidence 4679999999999999988865 8999999999888776443 334433 4555565433 3455689999997643
Q ss_pred ccccc--------------------chHHHHHHHHhhcCCCcEEEEEe
Q 003776 464 VPWHI--------------------EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 464 l~w~~--------------------d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
++... ....++.++.++|||||.+++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 32100 13467899999999999998764
No 84
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.90 E-value=2.1e-09 Score=111.72 Aligned_cols=91 Identities=22% Similarity=0.284 Sum_probs=67.3
Q ss_pred CCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEE-----cCCCCCCC--CCCceeEEEEc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAV-----MGTERLPF--PGIVFDAVHCA 460 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v-----~d~e~LPf--pd~SFDlVvss 460 (796)
.+.++|+|||+|.-++.++.. +|+|+|+++.||..+. +. .++.+.. .+.+..++ .++|.|+|+|.
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~-----k~-~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAK-----KH-PPVTYCHTPSTMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred cceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhh-----cC-CCcccccCCccccccccccccCCCcceeeehhh
Confidence 458999999999766666765 9999999998876443 32 2222211 12233344 48999999999
Q ss_pred CCCcccccchHHHHHHHHhhcCCCcEEE
Q 003776 461 RCRVPWHIEGGKLLLELNRVLRPGGFFI 488 (796)
Q Consensus 461 ~~~l~w~~d~~~~L~Ei~RVLKPGG~fv 488 (796)
.| +||. |+..++++++|+||+.|-++
T Consensus 108 qa-~HWF-dle~fy~~~~rvLRk~Gg~i 133 (261)
T KOG3010|consen 108 QA-VHWF-DLERFYKEAYRVLRKDGGLI 133 (261)
T ss_pred hh-HHhh-chHHHHHHHHHHcCCCCCEE
Confidence 98 9998 89999999999999987333
No 85
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.90 E-value=2.3e-08 Score=104.36 Aligned_cols=115 Identities=20% Similarity=0.274 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCC
Q 003776 370 ALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGT 444 (796)
Q Consensus 370 a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~ 444 (796)
...++..+.+.+.. ...+|||+|||+|.++..++.. .++++|+++.++..++ +.+...++. +.+...+.
T Consensus 73 ~~~l~~~~l~~~~~-----~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~-~~~~~~~~~~~~~~~~d~ 146 (251)
T TIGR03534 73 TEELVEAALERLKK-----GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVAR-KNAARLGLDNVTFLQSDW 146 (251)
T ss_pred hHHHHHHHHHhccc-----CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCeEEEEECch
Confidence 34455555555442 3568999999999999999864 7999999999988887 444455654 55566665
Q ss_pred CCCCCCCCceeEEEEcCCCcccc------c-------------------chHHHHHHHHhhcCCCcEEEEEe
Q 003776 445 ERLPFPGIVFDAVHCARCRVPWH------I-------------------EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 445 e~LPfpd~SFDlVvss~~~l~w~------~-------------------d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.. +++.++||+|+++..++... . ....++.++.++|+|||.+++..
T Consensus 147 ~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 147 FE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred hc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 43 45678999999975422211 0 01356789999999999999863
No 86
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.88 E-value=1.1e-08 Score=111.96 Aligned_cols=112 Identities=16% Similarity=0.144 Sum_probs=70.9
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHc-----CCCeEEEEcCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALER-----GIPAISAVMGT 444 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~er-----gl~~~~~v~d~ 444 (796)
..++.+.+.+.... ..++.+|||||||+|.++..|+++ .|+++|+++.|+..++.+..... +..+.+...+.
T Consensus 128 ~~v~~~l~~l~~~~-~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl 206 (315)
T PLN02585 128 QTVEKVLLWLAEDG-SLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL 206 (315)
T ss_pred HHHHHHHHHHHhcC-CCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence 33444445443210 124679999999999999999876 79999999999998875443220 22345555555
Q ss_pred CCCCCCCCceeEEEEcCCCcccccch-HHHHHHHHhhcCCCcEEE
Q 003776 445 ERLPFPGIVFDAVHCARCRVPWHIEG-GKLLLELNRVLRPGGFFI 488 (796)
Q Consensus 445 e~LPfpd~SFDlVvss~~~l~w~~d~-~~~L~Ei~RVLKPGG~fv 488 (796)
..+ +++||+|+|...++|+..+. ..++..+.+ |.+||.++
T Consensus 207 ~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 207 ESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred hhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 443 47899999987533322222 345555654 45666544
No 87
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.87 E-value=1.5e-08 Score=105.60 Aligned_cols=101 Identities=15% Similarity=-0.016 Sum_probs=71.8
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHH------------HcCCCeEEEEcCCCCCCCC-CCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFAL------------ERGIPAISAVMGTERLPFP-GIV 453 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~------------ergl~~~~~v~d~e~LPfp-d~S 453 (796)
++.+|||+|||.|..+.+|+++ .|+|+|+++..+..+..+... .....+.+.++|...++.. ...
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~ 116 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLAD 116 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCC
Confidence 3679999999999999999987 899999999877765321110 0122355677777666433 258
Q ss_pred eeEEEEcCCCccccc-chHHHHHHHHhhcCCCcEEEE
Q 003776 454 FDAVHCARCRVPWHI-EGGKLLLELNRVLRPGGFFIW 489 (796)
Q Consensus 454 FDlVvss~~~l~w~~-d~~~~L~Ei~RVLKPGG~fv~ 489 (796)
||+|+-..++++... ....++..+.++|||||.+++
T Consensus 117 fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 117 VDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred eeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 999997654232222 347899999999999996443
No 88
>PRK04266 fibrillarin; Provisional
Probab=98.86 E-value=2.1e-08 Score=105.05 Aligned_cols=97 Identities=20% Similarity=0.239 Sum_probs=70.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC----CCCCCCceeEEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER----LPFPGIVFDAVHC 459 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~----LPfpd~SFDlVvs 459 (796)
.++.+|||+|||+|.++..|+.. .|+++|+++.|+.... +.|+++ .++.....+... .+++ .+||+|++
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~~D~i~~ 147 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAEER-KNIIPILADARKPERYAHVV-EKVDVIYQ 147 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhhhc-CCcEEEECCCCCcchhhhcc-ccCCEEEE
Confidence 45789999999999999999875 6999999999887665 444443 234555666543 2233 56999997
Q ss_pred cCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 460 ARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 460 s~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
... .+| ....+|.++.|+|||||+|+++
T Consensus 148 d~~-~p~--~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 148 DVA-QPN--QAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred CCC-Chh--HHHHHHHHHHHhcCCCcEEEEE
Confidence 542 111 2245689999999999999986
No 89
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.86 E-value=1.4e-08 Score=104.90 Aligned_cols=96 Identities=26% Similarity=0.332 Sum_probs=69.5
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
++.+|||||||+|.++..|++. .|+++|+++.++..++.... ..+. .+.+...+ ++..+++||+|++...+.
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~-~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAP-EAGLAGNITFEVGD---LESLLGRFDTVVCLDVLI 138 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH-hcCCccCcEEEEcC---chhccCCcCEEEEcchhh
Confidence 4679999999999999999865 79999999999998885543 3333 34555555 455568899999986422
Q ss_pred cccc-chHHHHHHHHhhcCCCcEEE
Q 003776 465 PWHI-EGGKLLLELNRVLRPGGFFI 488 (796)
Q Consensus 465 ~w~~-d~~~~L~Ei~RVLKPGG~fv 488 (796)
|+.. +...++..+.+++++++++.
T Consensus 139 ~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 139 HYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred cCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 3322 44678888888876555443
No 90
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.85 E-value=2.1e-08 Score=110.39 Aligned_cols=104 Identities=19% Similarity=0.144 Sum_probs=79.0
Q ss_pred CCCCEEEEECCCCchhHHHHhh--CCeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFD--RGVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~--~~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
+++.+|||+|||+|.++..++. ..++|+|+++.|+..++.. +...++. +.+...|...+|+++++||+|+++..+-
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~n-l~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg 259 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARIN-LEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYG 259 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHH-HHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCc
Confidence 3577999999999998766544 4899999999999888744 4445554 3567788888999889999999974211
Q ss_pred -----cccc--c-hHHHHHHHHhhcCCCcEEEEEeC
Q 003776 465 -----PWHI--E-GGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 465 -----~w~~--d-~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
..+. + ...+|.++.|+|||||++++..+
T Consensus 260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred CcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 1111 1 36889999999999999998744
No 91
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.85 E-value=1.6e-08 Score=101.25 Aligned_cols=130 Identities=20% Similarity=0.201 Sum_probs=93.2
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCC
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTER 446 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~ 446 (796)
.++.+...+....-.+...+|||+|||.|.+...|++. .++|+|.++..+..|+ ..|+..+.+ +.+.+.|...
T Consensus 51 iv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~-niAe~~~~~n~I~f~q~DI~~ 129 (227)
T KOG1271|consen 51 IVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQ-NIAERDGFSNEIRFQQLDITD 129 (227)
T ss_pred HHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHH-HHHHhcCCCcceeEEEeeccC
Confidence 34555555442222234459999999999999999975 5899999999888876 778888877 6788888765
Q ss_pred CCCCCCceeEEEEcC--CCccccc-----chHHHHHHHHhhcCCCcEEEEEeCCCCCCchHHHHHH
Q 003776 447 LPFPGIVFDAVHCAR--CRVPWHI-----EGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIW 505 (796)
Q Consensus 447 LPfpd~SFDlVvss~--~~l~w~~-----d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~El~~~~ 505 (796)
-.+..+.||+|+--. -++..++ .+..++.-+.++|+|||+|+|. .+..+..|+.+.+
T Consensus 130 ~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvIt--SCN~T~dELv~~f 193 (227)
T KOG1271|consen 130 PDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVIT--SCNFTKDELVEEF 193 (227)
T ss_pred CcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEE--ecCccHHHHHHHH
Confidence 567778899987521 1122332 2346788899999999999985 4566666665554
No 92
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.85 E-value=3.9e-08 Score=100.01 Aligned_cols=106 Identities=14% Similarity=0.078 Sum_probs=73.2
Q ss_pred HHHHhCcccccCCCCCEEEEECCCCchhHHHHhh----CCeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCC-CCC
Q 003776 376 FIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD----RGVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTER-LPF 449 (796)
Q Consensus 376 ~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~----~~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~-LPf 449 (796)
.+...+.. .++.+|||+|||+|.++..++. ..|+++|+++.++..++.. +.+.++. +.+...++.. ++.
T Consensus 31 ~l~~~l~~----~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n-~~~~~~~~v~~~~~d~~~~~~~ 105 (196)
T PRK07402 31 LLISQLRL----EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRN-CDRFGVKNVEVIEGSAPECLAQ 105 (196)
T ss_pred HHHHhcCC----CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHhCCCCeEEEECchHHHHhh
Confidence 34555542 3578999999999999988864 3799999999998888744 4444543 4555555432 332
Q ss_pred CCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 450 PGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 450 pd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
....+|.|+... ..+...+|.++.++|+|||+|++..
T Consensus 106 ~~~~~d~v~~~~-----~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 106 LAPAPDRVCIEG-----GRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred CCCCCCEEEEEC-----CcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 223457665532 1245789999999999999999874
No 93
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.84 E-value=3.5e-08 Score=100.69 Aligned_cols=98 Identities=15% Similarity=0.159 Sum_probs=73.2
Q ss_pred CCCCEEEEECCCCchhHHHHhh-----CCeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCC-CCCCCCceeEEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTER-LPFPGIVFDAVHC 459 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~-----~~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~-LPfpd~SFDlVvs 459 (796)
.++.+|||+|||+|.++..++. .+|+++|+++.++..++.. +...++ .+.+...+... ++.....||+|++
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n-~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRN-AEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 3578999999999999887754 2799999999998887744 444553 34455555543 3433468999998
Q ss_pred cCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 460 ARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 460 s~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
... ..++..+|.++.++|||||+|++.
T Consensus 118 ~~~----~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 118 GGG----SEKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred CCC----cccHHHHHHHHHHHcCCCcEEEEE
Confidence 542 236788999999999999999975
No 94
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.84 E-value=4.1e-08 Score=106.67 Aligned_cols=100 Identities=17% Similarity=0.261 Sum_probs=73.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEcC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss~ 461 (796)
.+..+|||||||+|.++..++++ +++++|+ +.++..++ +.+.+.++. +.+...|....+++. +|+|+++.
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~ 223 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVN-ENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCR 223 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHH-HHHHhCCccceEEEEecCccCCCCCC--CCEEEeEh
Confidence 45689999999999999998875 6889997 66776665 445555553 456667765556653 69998876
Q ss_pred CCcccccc--hHHHHHHHHhhcCCCcEEEEEeC
Q 003776 462 CRVPWHIE--GGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 462 ~~l~w~~d--~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
. +|...+ ...+|++++++|||||+|++...
T Consensus 224 ~-lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 224 I-LYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred h-hhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 4 332222 25799999999999999998754
No 95
>PLN03075 nicotianamine synthase; Provisional
Probab=98.83 E-value=1.8e-08 Score=109.16 Aligned_cols=101 Identities=15% Similarity=0.182 Sum_probs=77.1
Q ss_pred CCCEEEEECCCCchhHHHHhh--C----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEc
Q 003776 389 RTRVVLDVGCGVASFGGFLFD--R----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCA 460 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~--~----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss 460 (796)
.+++|||||||.|.++..++. + .++++|+++.++..|+.......++. +.+...+...++-..+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 578999999998855444332 2 69999999999988885443435543 577777765554334689999998
Q ss_pred CCCcccc-cchHHHHHHHHhhcCCCcEEEEE
Q 003776 461 RCRVPWH-IEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 461 ~~~l~w~-~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+++.|. .+...+|..+.++|+|||+|++.
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 556664 58899999999999999999987
No 96
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.82 E-value=5.3e-09 Score=96.50 Aligned_cols=101 Identities=24% Similarity=0.343 Sum_probs=73.6
Q ss_pred CCEEEEECCCCchhHHHHhh---CCeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCCC--CCCCceeEEEEcCC
Q 003776 390 TRVVLDVGCGVASFGGFLFD---RGVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLP--FPGIVFDAVHCARC 462 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~---~~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~LP--fpd~SFDlVvss~~ 462 (796)
+.+|||+|||+|.++..+++ ..++++|+++..+..++..+. ..++ .+.+.+.|...++ +++++||+|+++..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLP-RNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCH-HCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHH-HccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 35899999999999888875 489999999987777764433 3443 4677777765554 77899999999875
Q ss_pred Cccccc-------chHHHHHHHHhhcCCCcEEEEEe
Q 003776 463 RVPWHI-------EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 463 ~l~w~~-------d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
++.... ....++.++.++|||||.+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 443221 12578999999999999999763
No 97
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.82 E-value=1.1e-09 Score=112.74 Aligned_cols=100 Identities=25% Similarity=0.338 Sum_probs=77.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCC-CCC-CCCCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTE-RLP-FPGIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e-~LP-fpd~SFDlVvss~~~l 464 (796)
+.+++||+|||||.++..|..+ +++|+|||..|+..| .++|+--...+.+.. -++ ..+..||+|++.-. +
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA-----~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV-l 198 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKA-----HEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV-L 198 (287)
T ss_pred ccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHH-----HhccchHHHHHHHHHHHhhhccCCcccchhhhhH-H
Confidence 3789999999999999999875 899999998887554 466654444444432 233 45678999999863 5
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
.+.-++..+|.-+...|+|||+|.||+-..
T Consensus 199 ~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 199 PYLGALEGLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred HhhcchhhHHHHHHHhcCCCceEEEEeccc
Confidence 666688999999999999999999996433
No 98
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.81 E-value=3.1e-08 Score=85.98 Aligned_cols=98 Identities=23% Similarity=0.281 Sum_probs=71.4
Q ss_pred EEEEECCCCchhHHHHhh---CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCC-CCCceeEEEEcCCCccc-
Q 003776 392 VVLDVGCGVASFGGFLFD---RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF-PGIVFDAVHCARCRVPW- 466 (796)
Q Consensus 392 ~VLDIGCGtG~~a~~La~---~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPf-pd~SFDlVvss~~~l~w- 466 (796)
+|||+|||+|.++..++. ..++++|+++..+..++............+...+....+. ..+.||+|+++.. +++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~-~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPP-LHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccc-eeeh
Confidence 589999999999988886 3899999999777666522211112234555555544432 4578999999874 444
Q ss_pred ccchHHHHHHHHhhcCCCcEEEEE
Q 003776 467 HIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 467 ~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
......++..+.++|+|||++++.
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 447789999999999999999975
No 99
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.80 E-value=1.2e-08 Score=104.52 Aligned_cols=85 Identities=20% Similarity=0.339 Sum_probs=57.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC-CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcccc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWH 467 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~ 467 (796)
....|.|+|||.+.++..+... .|...|+.... -....+|+..+|++++++|+|++.+++ .-
T Consensus 72 ~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n---------------~~Vtacdia~vPL~~~svDv~VfcLSL--MG 134 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPN---------------PRVTACDIANVPLEDESVDVAVFCLSL--MG 134 (219)
T ss_dssp TTS-EEEES-TT-HHHHH--S---EEEEESS-SS---------------TTEEES-TTS-S--TT-EEEEEEES-----S
T ss_pred CCEEEEECCCchHHHHHhcccCceEEEeeccCCC---------------CCEEEecCccCcCCCCceeEEEEEhhh--hC
Confidence 4579999999999999887654 78888885421 135678899999999999999997742 34
Q ss_pred cchHHHHHHHHhhcCCCcEEEEE
Q 003776 468 IEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 468 ~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.+...+|.|.+|+|||||.|.|+
T Consensus 135 Tn~~~fi~EA~RvLK~~G~L~IA 157 (219)
T PF05148_consen 135 TNWPDFIREANRVLKPGGILKIA 157 (219)
T ss_dssp S-HHHHHHHHHHHEEEEEEEEEE
T ss_pred CCcHHHHHHHHheeccCcEEEEE
Confidence 58899999999999999999987
No 100
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.80 E-value=2.7e-08 Score=101.07 Aligned_cols=86 Identities=24% Similarity=0.293 Sum_probs=66.1
Q ss_pred CCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC-C-CCCCCceeEEEEcCCCc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER-L-PFPGIVFDAVHCARCRV 464 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~-L-Pfpd~SFDlVvss~~~l 464 (796)
+.+|||||||+|.++..|+.. .++++|+++.++..++ .+++ .+...+... + ++++++||+|+|+.+ +
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~-----~~~~--~~~~~d~~~~l~~~~~~sfD~Vi~~~~-l 85 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACV-----ARGV--NVIQGDLDEGLEAFPDKSFDYVILSQT-L 85 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHH-----HcCC--eEEEEEhhhcccccCCCCcCEEEEhhH-h
Confidence 679999999999999988754 6799999987765553 3444 344555533 4 477889999999975 6
Q ss_pred ccccchHHHHHHHHhhcCC
Q 003776 465 PWHIEGGKLLLELNRVLRP 483 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKP 483 (796)
++..++..+|+++.|++++
T Consensus 86 ~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 86 QATRNPEEILDEMLRVGRH 104 (194)
T ss_pred HcCcCHHHHHHHHHHhCCe
Confidence 7667899999999887664
No 101
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.79 E-value=6.1e-08 Score=99.71 Aligned_cols=106 Identities=17% Similarity=0.158 Sum_probs=73.4
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCCC
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFP 450 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPfp 450 (796)
...+.+.+.. .++.+|||+|||+|.++..|+.. .|+++|+++.++..++..+. ..++. +.+...+......+
T Consensus 67 ~~~l~~~l~~----~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~-~~~~~~v~~~~~d~~~~~~~ 141 (212)
T PRK00312 67 VARMTELLEL----KPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLK-QLGLHNVSVRHGDGWKGWPA 141 (212)
T ss_pred HHHHHHhcCC----CCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHH-HCCCCceEEEECCcccCCCc
Confidence 3444444442 45789999999999998877664 79999999988887774443 34543 45555554322123
Q ss_pred CCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 451 GIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 451 d~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.++||+|++..+ ++ .+...+.+.|+|||.|++..
T Consensus 142 ~~~fD~I~~~~~-~~------~~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 142 YAPFDRILVTAA-AP------EIPRALLEQLKEGGILVAPV 175 (212)
T ss_pred CCCcCEEEEccC-ch------hhhHHHHHhcCCCcEEEEEE
Confidence 478999999753 32 23466889999999999863
No 102
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.77 E-value=1.5e-07 Score=106.27 Aligned_cols=101 Identities=17% Similarity=0.077 Sum_probs=73.3
Q ss_pred CCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCC-CCceeEEEEcCCCc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFP-GIVFDAVHCARCRV 464 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfp-d~SFDlVvss~~~l 464 (796)
..+|||+|||+|.++..|+.. .|+++|+++.++..++ +.+...+..+.+...|.....++ .++||+|+|+..++
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~Ar-eNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETAR-KNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 469999999999999888752 7999999999998887 44555566677777775433232 35799999987544
Q ss_pred cccc--------------------c----hHHHHHHHHhhcCCCcEEEEEe
Q 003776 465 PWHI--------------------E----GGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 465 ~w~~--------------------d----~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.... + ...++.++.+.|+|||++++..
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 3210 1 1255666778999999998764
No 103
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.77 E-value=7.2e-08 Score=97.47 Aligned_cols=92 Identities=17% Similarity=0.164 Sum_probs=64.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC--------CCCCcee
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP--------FPGIVFD 455 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP--------fpd~SFD 455 (796)
++.+|||+|||+|.++..++.+ .|+++|+++.+ ....+.+...+....+ ++.++||
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 5789999999999998887653 49999999843 1112344555554432 4567899
Q ss_pred EEEEcCCC---cccccc-------hHHHHHHHHhhcCCCcEEEEEe
Q 003776 456 AVHCARCR---VPWHIE-------GGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 456 lVvss~~~---l~w~~d-------~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+|++..+. -.|..+ ...+|.++.++|+|||+|++..
T Consensus 101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 99986420 112222 2578999999999999999863
No 104
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.75 E-value=3e-08 Score=104.72 Aligned_cols=124 Identities=18% Similarity=0.238 Sum_probs=88.6
Q ss_pred cCCCCccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC
Q 003776 359 FPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP 436 (796)
Q Consensus 359 Fpgggt~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~ 436 (796)
+-|.|.+|--...++.++|...-..........++||||+|.|..+..|+.. .|++.++|+.|. ....++|..
T Consensus 64 ~LgRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr-----~rL~~kg~~ 138 (265)
T PF05219_consen 64 ILGRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMR-----WRLSKKGFT 138 (265)
T ss_pred hhcCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHH-----HHHHhCCCe
Confidence 4567788877777776666432111111124678999999999999999885 899999999874 333457764
Q ss_pred eEEEEcCCCCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 437 AISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 437 ~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+. +...+.-.+..||+|.|.. ++.-|.+|..+|++|++.|+|+|+++++..
T Consensus 139 vl----~~~~w~~~~~~fDvIscLN-vLDRc~~P~~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 139 VL----DIDDWQQTDFKFDVISCLN-VLDRCDRPLTLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred EE----ehhhhhccCCceEEEeehh-hhhccCCHHHHHHHHHHHhCCCCEEEEEEE
Confidence 32 2222322346799999965 466677999999999999999999998754
No 105
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.74 E-value=3.4e-08 Score=97.82 Aligned_cols=80 Identities=20% Similarity=0.171 Sum_probs=64.8
Q ss_pred EEEeCChhhHHHHHHHHHHHc---CCCeEEEEcCCCCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEE
Q 003776 413 LTMSFAPKDEHEAQVQFALER---GIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIW 489 (796)
Q Consensus 413 ~gvDiSp~dl~~A~~q~A~er---gl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~ 489 (796)
+|+|+|+.|+..|+.+..... ...+.+.+++...+|+++++||+|++.++ +++..++..+|++++|+|||||.|++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~-l~~~~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYG-LRNVVDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecch-hhcCCCHHHHHHHHHHHcCcCeEEEE
Confidence 489999999998864432211 12467888899999999999999999875 77777999999999999999999998
Q ss_pred EeCC
Q 003776 490 SATP 493 (796)
Q Consensus 490 s~~~ 493 (796)
....
T Consensus 80 ~d~~ 83 (160)
T PLN02232 80 LDFN 83 (160)
T ss_pred EECC
Confidence 7443
No 106
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.73 E-value=7.2e-08 Score=104.24 Aligned_cols=102 Identities=16% Similarity=0.123 Sum_probs=74.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEcCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARC 462 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss~~ 462 (796)
+..+|||+|||+|.++..|+.+ .|+++|+++.++..|+ +.+...++. +.+...|... +++.++||+|+++..
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~-~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAE-INIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPP 198 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCC
Confidence 3568999999999999999864 7999999999998887 445555653 5566666522 334568999999743
Q ss_pred Ccccc----------cc--------------hHHHHHHHHhhcCCCcEEEEEeC
Q 003776 463 RVPWH----------IE--------------GGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 463 ~l~w~----------~d--------------~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
++... .+ ...++.++.++|+|||++++...
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 22210 01 14568889999999999998743
No 107
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.72 E-value=3.4e-07 Score=97.34 Aligned_cols=101 Identities=21% Similarity=0.237 Sum_probs=71.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
+..+|||+|||+|.++..|+.. .|+++|+++.++..++..........+.+...+... +++.++||+|+++..++
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYI 186 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcC
Confidence 4679999999999999988763 799999999998888754431122235555565422 33457899999975433
Q ss_pred cccc-------------------------chHHHHHHHHhhcCCCcEEEEE
Q 003776 465 PWHI-------------------------EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 465 ~w~~-------------------------d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.... ....++.++.++|+|||++++.
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 2100 1135677888999999999986
No 108
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.71 E-value=1.5e-07 Score=107.24 Aligned_cols=107 Identities=17% Similarity=0.328 Sum_probs=79.1
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC--CCCCceeEEEEcC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP--FPGIVFDAVHCAR 461 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP--fpd~SFDlVvss~ 461 (796)
.++.+|||+|||+|..+..++.+ .|+++|+++.++..++ +.+...|+.+.+...|...++ ++.++||.|++..
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~-~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVR-ENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 35789999999999999888763 7999999999998887 455556776666777776554 3457899999643
Q ss_pred -CC----------cccccch----------HHHHHHHHhhcCCCcEEEEEeCCCC
Q 003776 462 -CR----------VPWHIEG----------GKLLLELNRVLRPGGFFIWSATPVY 495 (796)
Q Consensus 462 -~~----------l~w~~d~----------~~~L~Ei~RVLKPGG~fv~s~~~~~ 495 (796)
|. +.|.... ..+|..+.++|||||+|++++....
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 11 1122111 3688999999999999999865433
No 109
>PTZ00146 fibrillarin; Provisional
Probab=98.70 E-value=1.2e-07 Score=102.47 Aligned_cols=112 Identities=17% Similarity=0.186 Sum_probs=74.8
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC-
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER- 446 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~- 446 (796)
....|..-+..+. ..++.+|||||||+|.++.+|+.. .|+++|+++.++... +..+..+ ..+..++.|+..
T Consensus 117 laa~i~~g~~~l~-IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dL-l~~ak~r-~NI~~I~~Da~~p 193 (293)
T PTZ00146 117 LAAAIIGGVANIP-IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDL-TNMAKKR-PNIVPIIEDARYP 193 (293)
T ss_pred HHHHHHCCcceec-cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHH-HHHhhhc-CCCEEEECCccCh
Confidence 3344444444332 246789999999999999999875 599999998654322 2444333 234556666532
Q ss_pred --CCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 447 --LPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 447 --LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
++++..+||+|++..+ . ..+...++.+++++|||||+|++.
T Consensus 194 ~~y~~~~~~vDvV~~Dva-~--pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 194 QKYRMLVPMVDVIFADVA-Q--PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred hhhhcccCCCCEEEEeCC-C--cchHHHHHHHHHHhccCCCEEEEE
Confidence 2223458999999762 2 113446667899999999999985
No 110
>PRK00811 spermidine synthase; Provisional
Probab=98.68 E-value=2.5e-07 Score=100.02 Aligned_cols=102 Identities=11% Similarity=0.070 Sum_probs=74.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHH-----cCCCeEEEEcCCCC-CCCCCCceeEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALE-----RGIPAISAVMGTER-LPFPGIVFDAV 457 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~e-----rgl~~~~~v~d~e~-LPfpd~SFDlV 457 (796)
+.+.+||+||||.|.++..++++ +|+++|+++.++..++..+..- ....+.+...|... +....++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 34789999999999999988775 6999999999988887554321 12335566676532 33356789999
Q ss_pred EEcCCCcccccc----hHHHHHHHHhhcCCCcEEEEE
Q 003776 458 HCARCRVPWHIE----GGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 458 vss~~~l~w~~d----~~~~L~Ei~RVLKPGG~fv~s 490 (796)
++..+ -++... ...+++.+.++|+|||.|++.
T Consensus 155 i~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDST-DPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99642 333221 257789999999999999975
No 111
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.68 E-value=2.1e-07 Score=100.51 Aligned_cols=99 Identities=16% Similarity=0.172 Sum_probs=72.6
Q ss_pred CEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 391 RVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 391 ~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
.+|||+|||+|.++..|+.. .|+++|+++.++..++ +.+...++. +.+...+... +++...||+|+++..++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~-~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAE-ENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 68999999999999988863 7999999999988887 445555554 5566666432 34445899999975333
Q ss_pred ccc------------c------------chHHHHHHHHhhcCCCcEEEEEe
Q 003776 465 PWH------------I------------EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 465 ~w~------------~------------d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
... + ....++.++.++|+|||+|++..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 211 0 12367788999999999999874
No 112
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.65 E-value=1.3e-07 Score=103.46 Aligned_cols=99 Identities=15% Similarity=0.116 Sum_probs=72.7
Q ss_pred CEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 391 RVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 391 ~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
.+|||+|||+|.++..|+.. .|+++|+++.++..|+ +.+...++. +.+...|... +++.++||+|+|+..++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~-~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAE-INIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 68999999999999998764 7999999999998887 445555553 5566666422 23456899999985332
Q ss_pred cc------------cc--------c----hHHHHHHHHhhcCCCcEEEEEe
Q 003776 465 PW------------HI--------E----GGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 465 ~w------------~~--------d----~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.. .+ + ...++.++.++|+|||++++..
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 21 00 0 1366888999999999999863
No 113
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.64 E-value=2.4e-07 Score=105.50 Aligned_cols=107 Identities=11% Similarity=0.155 Sum_probs=76.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEE--EEcCCCCCCC--CCCceeEEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAIS--AVMGTERLPF--PGIVFDAVHC 459 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~--~v~d~e~LPf--pd~SFDlVvs 459 (796)
.++.+|||+|||+|..+..++.. .|+++|+++.++..++ +.+...|+.+.. ...+...+++ +.++||.|++
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~-~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVY-ENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 35789999999999988888763 7999999999998887 445556766433 3344444443 5678999995
Q ss_pred c-----CCCcccccc----------------hHHHHHHHHhhcCCCcEEEEEeCCCC
Q 003776 460 A-----RCRVPWHIE----------------GGKLLLELNRVLRPGGFFIWSATPVY 495 (796)
Q Consensus 460 s-----~~~l~w~~d----------------~~~~L~Ei~RVLKPGG~fv~s~~~~~ 495 (796)
. .+.++.+++ ...+|.++.++|||||.|++++....
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 2 122322222 24789999999999999999866443
No 114
>PRK04457 spermidine synthase; Provisional
Probab=98.62 E-value=2.1e-07 Score=99.57 Aligned_cols=116 Identities=14% Similarity=0.165 Sum_probs=78.3
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHc-CCCeEEEEcCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALER-GIPAISAVMGTER 446 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~er-gl~~~~~v~d~e~ 446 (796)
.|.+.+...+.. ...+.+|||||||.|.++..|+.+ .|+++|+++.++..++..+.... ...+.+++.|...
T Consensus 52 ~y~~~m~~~l~~---~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~ 128 (262)
T PRK04457 52 AYTRAMMGFLLF---NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAE 128 (262)
T ss_pred HHHHHHHHHHhc---CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHH
Confidence 455555443322 134679999999999999988764 79999999998887775443221 1234566666422
Q ss_pred -CCCCCCceeEEEEcCC---CcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 447 -LPFPGIVFDAVHCARC---RVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 447 -LPfpd~SFDlVvss~~---~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
++-..++||+|++... .++.+.....++.++.++|+|||.|++.
T Consensus 129 ~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 129 YIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred HHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 2322368999998531 0111123369999999999999999985
No 115
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.61 E-value=1e-07 Score=99.94 Aligned_cols=85 Identities=19% Similarity=0.303 Sum_probs=68.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhCCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcccc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWH 467 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~ 467 (796)
+....|.|+|||.+.++.. ....|..+|+.+. .-....+|+.++|+++++.|++++.++ ...
T Consensus 179 ~~~~vIaD~GCGEakiA~~-~~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDvaV~CLS--LMg 240 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIASS-ERHKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDVAVFCLS--LMG 240 (325)
T ss_pred cCceEEEecccchhhhhhc-cccceeeeeeecC---------------CCceeeccccCCcCccCcccEEEeeHh--hhc
Confidence 3467899999999988761 1237899988652 124577889999999999999998664 334
Q ss_pred cchHHHHHHHHhhcCCCcEEEEE
Q 003776 468 IEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 468 ~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.+...+|.|++|+|||||.++|+
T Consensus 241 tn~~df~kEa~RiLk~gG~l~IA 263 (325)
T KOG3045|consen 241 TNLADFIKEANRILKPGGLLYIA 263 (325)
T ss_pred ccHHHHHHHHHHHhccCceEEEE
Confidence 58899999999999999999987
No 116
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.60 E-value=4.3e-07 Score=96.02 Aligned_cols=102 Identities=19% Similarity=0.281 Sum_probs=75.1
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCC--CCCCceeEEEEc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLP--FPGIVFDAVHCA 460 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LP--fpd~SFDlVvss 460 (796)
...+|||||||+|.++..|+++ .|+++++.+.+...|+...+. .++. +.++..|...+. ....+||+|+|+
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l-n~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL-NPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHh-CcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 4789999999999999999876 799999999988888755554 2222 445556654432 334479999998
Q ss_pred CCCccccc-----------------chHHHHHHHHhhcCCCcEEEEEe
Q 003776 461 RCRVPWHI-----------------EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 461 ~~~l~w~~-----------------d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
..+..-.. +...+++-..++|||||+|.+..
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 74322111 24578888999999999999873
No 117
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.60 E-value=3.8e-07 Score=100.38 Aligned_cols=106 Identities=17% Similarity=0.091 Sum_probs=74.5
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCC
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTER 446 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~ 446 (796)
....+.+.+.. +++.+|||||||+|.++..|++. .|+++|+++.++..|+ +.+...++. +.+...+...
T Consensus 68 l~a~ll~~L~i----~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar-~~l~~~g~~nV~~i~gD~~~ 142 (322)
T PRK13943 68 LMALFMEWVGL----DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAK-RNVRRLGIENVIFVCGDGYY 142 (322)
T ss_pred HHHHHHHhcCC----CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEeCChhh
Confidence 33445454432 35689999999999999998863 4999999999988877 334445554 4555566555
Q ss_pred CCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 447 LPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 447 LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.+.....||+|++... +. .....+.++|+|||.+++.
T Consensus 143 ~~~~~~~fD~Ii~~~g-~~------~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 143 GVPEFAPYDVIFVTVG-VD------EVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred cccccCCccEEEECCc-hH------HhHHHHHHhcCCCCEEEEE
Confidence 4444567999999753 22 2334578899999999875
No 118
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.58 E-value=2.9e-07 Score=101.61 Aligned_cols=103 Identities=20% Similarity=0.319 Sum_probs=71.1
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHH------c----CCCeEEEEcCCC------CCCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALE------R----GIPAISAVMGTE------RLPF 449 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~e------r----gl~~~~~v~d~e------~LPf 449 (796)
++.+|||||||-|.-..-...+ .++|+|++...+.+|+.++..- + ...+.++..|.. .++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 6789999999999855554443 7999999999999998766321 1 123455666542 2233
Q ss_pred CCCceeEEEEcCCCccccc----chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 450 PGIVFDAVHCARCRVPWHI----EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 450 pd~SFDlVvss~~~l~w~~----d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
....||+|-|-++ +|+.. ....+|..+...|||||+|+.+.+
T Consensus 142 ~~~~FDvVScQFa-lHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFA-LHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES--GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHH-HHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 3359999999886 88765 225689999999999999998744
No 119
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.58 E-value=4.2e-07 Score=103.86 Aligned_cols=107 Identities=16% Similarity=0.189 Sum_probs=79.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCC----CCCCceeEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLP----FPGIVFDAV 457 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LP----fpd~SFDlV 457 (796)
.++.+|||+|||+|..+..|+.. .|+++|+++.++..++ +.+...|+. +.+...|...++ +..++||.|
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~-~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQ-ENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHH-HHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 35789999999999999888763 6999999999998887 445556664 456667766665 456789999
Q ss_pred EEcC-----CCcccccc----------------hHHHHHHHHhhcCCCcEEEEEeCCCC
Q 003776 458 HCAR-----CRVPWHIE----------------GGKLLLELNRVLRPGGFFIWSATPVY 495 (796)
Q Consensus 458 vss~-----~~l~w~~d----------------~~~~L~Ei~RVLKPGG~fv~s~~~~~ 495 (796)
++.. ..+..+++ ...+|.++.++|||||+|++++....
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 9631 12332322 24779999999999999998865443
No 120
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.54 E-value=1.6e-07 Score=101.21 Aligned_cols=104 Identities=23% Similarity=0.313 Sum_probs=78.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHc------CCCeEEEEcCC------CCCCCCCC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALER------GIPAISAVMGT------ERLPFPGI 452 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~er------gl~~~~~v~d~------e~LPfpd~ 452 (796)
+++..+||||||-|.-+...-++ .++++||+...+..|+.++-.-+ -.++.++.+|. ..+++++.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 35788999999999765554443 89999999999988876543211 23456777763 45577777
Q ss_pred ceeEEEEcCCCccccc----chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 453 VFDAVHCARCRVPWHI----EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 453 SFDlVvss~~~l~w~~----d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+||+|-|-+| +|+.. ....+|+.+.+.|||||+||-+.|
T Consensus 196 ~fDivScQF~-~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 196 RFDIVSCQFA-FHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred Ccceeeeeee-EeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 7999999887 77764 346889999999999999997643
No 121
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.54 E-value=1.6e-07 Score=107.09 Aligned_cols=106 Identities=17% Similarity=0.244 Sum_probs=77.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCC-CCCCceeEEEEc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLP-FPGIVFDAVHCA 460 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LP-fpd~SFDlVvss 460 (796)
.++.+|||+|||+|..+.+++.. .|+++|+++.++..++ +.+.+.|+. +.+...|...++ +..++||.|++.
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~-~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVE-KHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHH-HHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 45789999999999988877653 7999999999998887 445566765 456667776665 456789999963
Q ss_pred C-C----Ccccccc----------------hHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 461 R-C----RVPWHIE----------------GGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 461 ~-~----~l~w~~d----------------~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
. | .+..+++ ...+|..+.++|||||++++++...
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 1 1 1211111 1456889999999999999987643
No 122
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.53 E-value=3.9e-07 Score=90.70 Aligned_cols=96 Identities=17% Similarity=0.210 Sum_probs=69.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCccc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w 466 (796)
.+.+|||||||+|.++..|+++ .|+++|+++.++..++...+. ...+.+...|+..+++++..||.|+++. ++
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~d~vi~n~---Py 87 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQPYKVVGNL---PY 87 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCCCEEEECC---Cc
Confidence 4679999999999999999886 899999999888777644322 2245677788888888877899999975 34
Q ss_pred ccchHHHHHHHHh--hcCCCcEEEEE
Q 003776 467 HIEGGKLLLELNR--VLRPGGFFIWS 490 (796)
Q Consensus 467 ~~d~~~~L~Ei~R--VLKPGG~fv~s 490 (796)
+.. ...+..+.+ .+.++|.|++.
T Consensus 88 ~~~-~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 88 NIS-TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred ccH-HHHHHHHHhcCCCcceEEEEEE
Confidence 432 233333332 24588888876
No 123
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.53 E-value=5.8e-07 Score=94.21 Aligned_cols=102 Identities=17% Similarity=0.028 Sum_probs=77.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHH------------HHHcCCCeEEEEcCCCCCCCC---C
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQF------------ALERGIPAISAVMGTERLPFP---G 451 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~------------A~ergl~~~~~v~d~e~LPfp---d 451 (796)
++.+||+.|||.|.-+.+|+++ .|+|+|+|+..+..+..+. ...++..+.+.++|...++.. .
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~ 122 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL 122 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence 4679999999999999999986 8999999998877654321 112355678888998887642 2
Q ss_pred CceeEEEEcCCCccccc-chHHHHHHHHhhcCCCcEEEEE
Q 003776 452 IVFDAVHCARCRVPWHI-EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 452 ~SFDlVvss~~~l~w~~-d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+.||+|+-..+++..++ ....++..+.++|+|||.+++.
T Consensus 123 ~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 123 PVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred CCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 67999986544344344 3478999999999999998865
No 124
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.53 E-value=7.4e-07 Score=102.14 Aligned_cols=105 Identities=17% Similarity=0.295 Sum_probs=76.7
Q ss_pred CCCCEEEEECCCCchhHHHHhh-----CCeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCCCCCceeEEEEc-
Q 003776 388 KRTRVVLDVGCGVASFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCA- 460 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~-----~~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPfpd~SFDlVvss- 460 (796)
.++.+|||+|||+|..+..|+. ..|+++|+++.++..++ +.+...|+. +.+...++..++ ++++||+|++.
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~-~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~ 326 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIR-SHASALGITIIETIEGDARSFS-PEEQPDAILLDA 326 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH-HHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcC
Confidence 3568999999999998877765 27999999999998887 455566765 456666766654 45789999962
Q ss_pred ---C-CC------cccccch----------HHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 461 ---R-CR------VPWHIEG----------GKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 461 ---~-~~------l~w~~d~----------~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
. .. +.|+..+ ..+|.++.++|||||+|++++...
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 1 11 1233221 358999999999999999986544
No 125
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.53 E-value=1.4e-06 Score=93.46 Aligned_cols=101 Identities=14% Similarity=0.082 Sum_probs=70.6
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcC----CCeEEEEcCC-CCCCCCCCceeEEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERG----IPAISAVMGT-ERLPFPGIVFDAVHC 459 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~erg----l~~~~~v~d~-e~LPfpd~SFDlVvs 459 (796)
.+++||+||||+|.++..++++ .++++|+++.++..++..+....+ ..+.+...|. .-+....++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 4569999999999999888764 699999999888877754433211 2234444543 222223478999998
Q ss_pred cCCCcccccc----hHHHHHHHHhhcCCCcEEEEE
Q 003776 460 ARCRVPWHIE----GGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 460 s~~~l~w~~d----~~~~L~Ei~RVLKPGG~fv~s 490 (796)
... .+.... ...+++.+.++|+|||.|++.
T Consensus 152 D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 152 DST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred eCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 653 222221 357889999999999999976
No 126
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.50 E-value=3.3e-07 Score=95.02 Aligned_cols=107 Identities=23% Similarity=0.268 Sum_probs=71.4
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCC
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGT 444 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~ 444 (796)
......+.+.+.. +++.+|||||||+|++++.|+.. .|+++|+.+.....|+..++. .++ ++.+...|.
T Consensus 58 P~~~a~~l~~L~l----~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~-~~~~nv~~~~gdg 132 (209)
T PF01135_consen 58 PSMVARMLEALDL----KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLAR-LGIDNVEVVVGDG 132 (209)
T ss_dssp HHHHHHHHHHTTC-----TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHH-HTTHSEEEEES-G
T ss_pred HHHHHHHHHHHhc----CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHH-hccCceeEEEcch
Confidence 4455566666653 46889999999999999988863 488999999887777755544 344 456666664
Q ss_pred C-CCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 445 E-RLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 445 e-~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
. .+| ....||.|++..+ +. .. -..+.+.||+||++++-
T Consensus 133 ~~g~~-~~apfD~I~v~~a-~~---~i---p~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 133 SEGWP-EEAPFDRIIVTAA-VP---EI---PEALLEQLKPGGRLVAP 171 (209)
T ss_dssp GGTTG-GG-SEEEEEESSB-BS---S-----HHHHHTEEEEEEEEEE
T ss_pred hhccc-cCCCcCEEEEeec-cc---hH---HHHHHHhcCCCcEEEEE
Confidence 2 232 3467999999864 32 22 24467779999999975
No 127
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.50 E-value=7.2e-07 Score=95.44 Aligned_cols=106 Identities=15% Similarity=0.221 Sum_probs=75.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCCCCCceeEEEEcC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPfpd~SFDlVvss~ 461 (796)
.++.+|||+|||+|..+..|+.. .|+++|+++.++..++.. +...++. +.+...|...++...+.||+|++..
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n-~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIAN-INRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHH-HHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 35789999999999999887653 699999999998888744 4445654 4555566666665556799999732
Q ss_pred -C----Ccc--------ccc--------chHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 462 -C----RVP--------WHI--------EGGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 462 -~----~l~--------w~~--------d~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
| .+. |.. ....+|..+.++|||||+|++++...
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 1 111 111 11358889999999999999986543
No 128
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.50 E-value=1.8e-06 Score=91.79 Aligned_cols=99 Identities=21% Similarity=0.217 Sum_probs=69.5
Q ss_pred CCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC-CCC-CCCceeEEEEcCCC
Q 003776 390 TRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER-LPF-PGIVFDAVHCARCR 463 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~-LPf-pd~SFDlVvss~~~ 463 (796)
..+|||+|||+|.++..|+.. .|+++|+++.++..++.. +...+. .+...|... ++- ..+.||+|+++..+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N-~~~~~~--~~~~~D~~~~l~~~~~~~fDlVv~NPPy 163 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRN-LADAGG--TVHEGDLYDALPTALRGRVDILAANAPY 163 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCC--EEEEeechhhcchhcCCCEeEEEECCCC
Confidence 458999999999999988753 799999999998888744 444443 455555432 321 13579999998654
Q ss_pred ccc------------cc---------c----hHHHHHHHHhhcCCCcEEEEEe
Q 003776 464 VPW------------HI---------E----GGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 464 l~w------------~~---------d----~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+.. +. + ...++..+.++|+|||+|++..
T Consensus 164 ~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 164 VPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred CCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 431 10 1 1356677789999999999873
No 129
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.45 E-value=3.3e-08 Score=86.64 Aligned_cols=91 Identities=20% Similarity=0.311 Sum_probs=61.9
Q ss_pred cccCccccceeeeccCC-CeEEEEeecCCCCCChhHHHhhcccc---cccccccccCCCCccccccccccccccccCCcc
Q 003776 648 MDMRSVYGGFAAAMKDI-SVWVMNVISIDSPDTLPIIYERGLFG---IYHDWCESFSTYPRTYDLLHADHLFSKIKKRCN 723 (796)
Q Consensus 648 mDm~~g~g~faA~l~~~-~vwvmnv~p~~~~~~l~~i~eRGlig---~~~~~ce~f~typrtyDl~Ha~~~~s~~~~rC~ 723 (796)
||+|||.|-+++.|.++ +.=|..+-+.. ..+..+-+|.--. +.+.=-+.+|..+++||+|++.++|..+ -.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~--~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~---~~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISE--EMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL---ED 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-H--HHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS---SH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCH--HHHHHHHhcccccCchheeehHHhCccccccccccccccceeec---cC
Confidence 79999999999999888 43333333322 3455555544211 2222234555556999999999999877 57
Q ss_pred hHHHHHhhcccccCCcEEEE
Q 003776 724 LVAVVAEVDRILRPEGKLIV 743 (796)
Q Consensus 724 ~~~~l~E~DRiLRP~G~~i~ 743 (796)
...+|-|+-|+|||||+++|
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 78899999999999999986
No 130
>PLN02366 spermidine synthase
Probab=98.44 E-value=3.7e-06 Score=92.10 Aligned_cols=103 Identities=17% Similarity=0.090 Sum_probs=73.1
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHc----CCCeEEEEcCCCC-C-CCCCCceeEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALER----GIPAISAVMGTER-L-PFPGIVFDAV 457 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~er----gl~~~~~v~d~e~-L-Pfpd~SFDlV 457 (796)
+.+.+||+||||.|.++..+++. +|+.+|+++.++..++..+.... ...+.++..|... + ..+.+.||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 34789999999999999999875 68899999988887775543321 2235666666422 1 1235689999
Q ss_pred EEcCCCccccc----chHHHHHHHHhhcCCCcEEEEEe
Q 003776 458 HCARCRVPWHI----EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 458 vss~~~l~w~~----d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
++... -++.. -...+++.+.++|+|||.|+...
T Consensus 170 i~D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 98642 33322 12478999999999999998653
No 131
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.43 E-value=9.7e-07 Score=90.54 Aligned_cols=99 Identities=26% Similarity=0.387 Sum_probs=71.2
Q ss_pred CEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCe-EEEEcCCCC-CC--CCCCceeEEEEcCC
Q 003776 391 RVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPA-ISAVMGTER-LP--FPGIVFDAVHCARC 462 (796)
Q Consensus 391 ~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~-~~~v~d~e~-LP--fpd~SFDlVvss~~ 462 (796)
..+||||||.|.+...++.. .++|+|+...-+..+. +.+...++.. .+...++.. |+ ++++++|.|+.++.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~-~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKAL-RKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHH-HHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHH-HHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 38999999999999999874 8999999998888776 4445556654 455556544 32 56799999999875
Q ss_pred Ccccccc--------hHHHHHHHHhhcCCCcEEEEEe
Q 003776 463 RVPWHIE--------GGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 463 ~l~w~~d--------~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
-+|.-. -..+|..+.++|+|||.|.|.+
T Consensus 98 -DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 98 -DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred -CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 666541 1589999999999999999873
No 132
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=2.6e-06 Score=92.07 Aligned_cols=97 Identities=23% Similarity=0.333 Sum_probs=71.5
Q ss_pred EEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCe-EEEEcCCCCCCCCCCceeEEEEcCCCccc
Q 003776 392 VVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPA-ISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (796)
Q Consensus 392 ~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~-~~~v~d~e~LPfpd~SFDlVvss~~~l~w 466 (796)
+|||||||+|.++..|+.. .|+++|+++..+..|+ +.|...++.. ..+..+. .-+.. +.||+|+||..++..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~-~Na~~~~l~~~~~~~~dl-f~~~~-~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAR-ENAERNGLVRVLVVQSDL-FEPLR-GKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHH-HHHHHcCCccEEEEeeec-ccccC-CceeEEEeCCCCCCC
Confidence 8999999999999999874 7999999999988887 6666777532 2233321 11233 489999999876665
Q ss_pred c---c-------ch--------------HHHHHHHHhhcCCCcEEEEEe
Q 003776 467 H---I-------EG--------------GKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 467 ~---~-------d~--------------~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
. . +| ..++.++.+.|+|||.+++..
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 4 0 11 256778899999999999863
No 133
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.36 E-value=2.9e-06 Score=89.34 Aligned_cols=99 Identities=11% Similarity=0.026 Sum_probs=71.5
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCC-CC-----CCCCcee
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTER-LP-----FPGIVFD 455 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~-LP-----fpd~SFD 455 (796)
+..+|||||||+|..+..|+.. .|+++|+++..+..|+..+ .+.|+. +.+..+++.. |+ .+.++||
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~-~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFI-KKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 3679999999999877666542 7999999998888787444 445553 4556666522 22 1246899
Q ss_pred EEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 456 AVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 456 lVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+|+.... ......++..+.++|||||++++...
T Consensus 147 ~VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 147 FAFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred EEEECCC----HHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 9998641 23456889999999999999997643
No 134
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.36 E-value=3.4e-06 Score=96.62 Aligned_cols=104 Identities=15% Similarity=0.283 Sum_probs=74.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCC--CCCCceeEEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLP--FPGIVFDAVHC 459 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LP--fpd~SFDlVvs 459 (796)
.++.+|||+|||+|..+..++.+ .|+++|+++.++..++ +.+...|+. +.+...|...++ ++ ++||+|++
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~-~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~ 326 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIE-ENAKRLGLTNIETKALDARKVHEKFA-EKFDKILV 326 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEE
Confidence 35679999999999999888763 6999999999988877 455556654 455666665543 34 78999997
Q ss_pred cC-CC----cc------cccc----------hHHHHHHHHhhcCCCcEEEEEeCC
Q 003776 460 AR-CR----VP------WHIE----------GGKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 460 s~-~~----l~------w~~d----------~~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
.. |. +. |... ...+|..+.++|||||.|++++..
T Consensus 327 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 327 DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 53 10 11 1111 135789999999999999987543
No 135
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.36 E-value=3.1e-06 Score=95.74 Aligned_cols=111 Identities=14% Similarity=0.022 Sum_probs=75.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC---eEEEEcCCCCC----CCCCCceeEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP---AISAVMGTERL----PFPGIVFDAVH 458 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~---~~~~v~d~e~L----Pfpd~SFDlVv 458 (796)
.+.+|||+|||+|.++..++.. .|+++|+++.++..++ +.+...++. +.+..+|+..+ ....++||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~-~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIAR-QNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 3679999999999988765442 7999999999998887 444445553 45666775332 12346899999
Q ss_pred EcCCCccccc--------chHHHHHHHHhhcCCCcEEEEEeCCCCCCchH
Q 003776 459 CARCRVPWHI--------EGGKLLLELNRVLRPGGFFIWSATPVYQKLPE 500 (796)
Q Consensus 459 ss~~~l~w~~--------d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~E 500 (796)
+....+.-.. +...++....++|+|||+|+++++...-...+
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~ 348 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDL 348 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHH
Confidence 9864322111 12345556789999999999765544444333
No 136
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.35 E-value=1.8e-06 Score=90.59 Aligned_cols=98 Identities=19% Similarity=0.280 Sum_probs=80.6
Q ss_pred CEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCCCCC-C--CCCCceeEEEEcCC
Q 003776 391 RVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTERL-P--FPGIVFDAVHCARC 462 (796)
Q Consensus 391 ~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~e~L-P--fpd~SFDlVvss~~ 462 (796)
..+||||||.|.+...++.+ .++||++...-+..+. +.+.+.++ ++.+...|+..+ + ++++++|-|+.++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l-~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKAL-KKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHH-HHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 58999999999999999986 8999999988777775 67778888 777777775332 2 45569999999987
Q ss_pred Ccccccch--------HHHHHHHHhhcCCCcEEEEE
Q 003776 463 RVPWHIEG--------GKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 463 ~l~w~~d~--------~~~L~Ei~RVLKPGG~fv~s 490 (796)
-+|+-.. +.+|..+.++|+|||.|.|.
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 8887522 58999999999999999997
No 137
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.35 E-value=5.8e-06 Score=85.18 Aligned_cols=120 Identities=16% Similarity=0.281 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeE--EEEcC
Q 003776 370 ALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAI--SAVMG 443 (796)
Q Consensus 370 a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~--~~v~d 443 (796)
.....+.|.+.++. .+.+||+||||||..+.+++.+ .....|+++..+. .....+.+.+++.. -...|
T Consensus 11 k~pIl~vL~~~l~~-----~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~-sI~a~~~~~~~~Nv~~P~~lD 84 (204)
T PF06080_consen 11 KDPILEVLKQYLPD-----SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRP-SIRAWIAEAGLPNVRPPLALD 84 (204)
T ss_pred HhHHHHHHHHHhCc-----cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHh-hHHHHHHhcCCcccCCCeEee
Confidence 34455666666664 2336999999999999999875 3344455543321 11233334443311 11222
Q ss_pred CCC--CC------CCCCceeEEEEcCCCccccc--chHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 003776 444 TER--LP------FPGIVFDAVHCARCRVPWHI--EGGKLLLELNRVLRPGGFFIWSATPVYQ 496 (796)
Q Consensus 444 ~e~--LP------fpd~SFDlVvss~~~l~w~~--d~~~~L~Ei~RVLKPGG~fv~s~~~~~~ 496 (796)
+.. .| +..++||+|+|... +|-.. ....+|..+.++|+|||+|++-.++.++
T Consensus 85 v~~~~w~~~~~~~~~~~~~D~i~~~N~-lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~ 146 (204)
T PF06080_consen 85 VSAPPWPWELPAPLSPESFDAIFCINM-LHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRD 146 (204)
T ss_pred cCCCCCccccccccCCCCcceeeehhH-HHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccC
Confidence 211 22 23569999999763 55444 4478999999999999999998877654
No 138
>PHA03411 putative methyltransferase; Provisional
Probab=98.34 E-value=2.2e-06 Score=92.10 Aligned_cols=96 Identities=15% Similarity=0.095 Sum_probs=69.0
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
...+|||+|||+|.++..++.+ +|+++|+++.++..++.. ...+.+...|...+.. ...||+|+++..+.
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n-----~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~ 137 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL-----LPEAEWITSDVFEFES-NEKFDVVISNPPFG 137 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----CcCCEEEECchhhhcc-cCCCcEEEEcCCcc
Confidence 3569999999999998877653 799999999887666532 2235667777766543 46899999987644
Q ss_pred ccccc-------------------hHHHHHHHHhhcCCCcEEEEE
Q 003776 465 PWHIE-------------------GGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 465 ~w~~d-------------------~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+.... ...++..+.++|+|+|.+++.
T Consensus 138 ~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 138 KINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred ccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 32111 235667788999999987765
No 139
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.33 E-value=1.1e-06 Score=91.89 Aligned_cols=101 Identities=19% Similarity=0.263 Sum_probs=68.8
Q ss_pred CEEEEECCCCchhHHHHhhC------CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCC--C--CCCCCCCceeEEEEc
Q 003776 391 RVVLDVGCGVASFGGFLFDR------GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT--E--RLPFPGIVFDAVHCA 460 (796)
Q Consensus 391 ~~VLDIGCGtG~~a~~La~~------~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~--e--~LPfpd~SFDlVvss 460 (796)
.+||+||||.|.....|++- .|.+.|+||..+..-+.+..... ......+.|. . .-|...+++|+|++.
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccchhccCCCCcCccceEEEE
Confidence 38999999999888777763 68999999976654432211100 1112233332 2 335678999999998
Q ss_pred CCCccccc-chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 461 RCRVPWHI-EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 461 ~~~l~w~~-d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+.+.--++ ....+|.+++++|||||.++|..-
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 74332333 447899999999999999999843
No 140
>PRK01581 speE spermidine synthase; Validated
Probab=98.33 E-value=2.7e-06 Score=94.52 Aligned_cols=103 Identities=16% Similarity=0.095 Sum_probs=72.1
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHH----H---cCCCeEEEEcCCCC-CCCCCCcee
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFAL----E---RGIPAISAVMGTER-LPFPGIVFD 455 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~----e---rgl~~~~~v~d~e~-LPfpd~SFD 455 (796)
..+.+||+||||+|..++.+++. +|+++|+++.++..|+..... . ....+.+.+.|... ++-..+.||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 34679999999999988888764 799999999988877731110 1 12345666666533 444457899
Q ss_pred EEEEcCCCcccc-----cchHHHHHHHHhhcCCCcEEEEEe
Q 003776 456 AVHCARCRVPWH-----IEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 456 lVvss~~~l~w~-----~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+|++... -+.. .....++..+++.|+|||.|++..
T Consensus 229 VIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9999742 1111 112568899999999999998763
No 141
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.32 E-value=9.2e-06 Score=82.40 Aligned_cols=96 Identities=19% Similarity=0.148 Sum_probs=74.4
Q ss_pred CCCCEEEEECCCCchhHHHHhh----CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEE-cCC-CCCCCCCCceeEEEEcC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFD----RGVLTMSFAPKDEHEAQVQFALERGIPAISAV-MGT-ERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~----~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v-~d~-e~LPfpd~SFDlVvss~ 461 (796)
.++.+++|||||+|+++..++. .+|+++|-++..+...+ +.+.+.|++....+ +++ +.|+-.+ +||.||...
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~-~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIGG 110 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIE-RNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFIGG 110 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHH-HHHHHhCCCcEEEEeccchHhhcCCC-CCCEEEECC
Confidence 4688999999999999998883 28999999988776665 55666677654444 444 4454322 799999976
Q ss_pred CCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 462 CRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 462 ~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
. .....+|..+...|||||++++.
T Consensus 111 g-----~~i~~ile~~~~~l~~ggrlV~n 134 (187)
T COG2242 111 G-----GNIEEILEAAWERLKPGGRLVAN 134 (187)
T ss_pred C-----CCHHHHHHHHHHHcCcCCeEEEE
Confidence 3 35789999999999999999976
No 142
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=3.6e-06 Score=86.91 Aligned_cols=105 Identities=16% Similarity=0.175 Sum_probs=72.6
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCC-CCCC
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGT-ERLP 448 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~-e~LP 448 (796)
....+.+.+.. .++.+||+||||+|+.++.|++. +|++++..+.....|+..+ ...|. ++...+.|. .-+|
T Consensus 60 ~vA~m~~~L~~----~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L-~~lg~~nV~v~~gDG~~G~~ 134 (209)
T COG2518 60 MVARMLQLLEL----KPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNL-ETLGYENVTVRHGDGSKGWP 134 (209)
T ss_pred HHHHHHHHhCC----CCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHH-HHcCCCceEEEECCcccCCC
Confidence 34455555543 56899999999999999999875 8999999987766666443 44566 345555553 3333
Q ss_pred CCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 449 FPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 449 fpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+...||.|+...+ .... | ..+.+.|||||++++-
T Consensus 135 -~~aPyD~I~Vtaa-a~~v--P----~~Ll~QL~~gGrlv~P 168 (209)
T COG2518 135 -EEAPYDRIIVTAA-APEV--P----EALLDQLKPGGRLVIP 168 (209)
T ss_pred -CCCCcCEEEEeec-cCCC--C----HHHHHhcccCCEEEEE
Confidence 2368999998753 3322 2 3356679999999975
No 143
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.31 E-value=3.7e-06 Score=96.32 Aligned_cols=98 Identities=21% Similarity=0.197 Sum_probs=72.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCC----CCCCCCCceeEEEEc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTE----RLPFPGIVFDAVHCA 460 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e----~LPfpd~SFDlVvss 460 (796)
.++.+|||+|||+|.++..|+.. .|+++|+++.++..|+ +.+...++. +.+...+.. .+++.+++||+|++.
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~-~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERAR-ENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 34679999999999999999875 7999999999999887 445555553 566666653 244666789999997
Q ss_pred CCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 461 RCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 461 ~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
... . .....+..+.+ |+|++.++++-
T Consensus 375 PPr---~-g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 375 PPR---A-GAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred cCC---c-ChHHHHHHHHh-cCCCeEEEEEe
Confidence 532 1 23456655555 69999999883
No 144
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.26 E-value=1.7e-06 Score=89.60 Aligned_cols=103 Identities=15% Similarity=0.106 Sum_probs=69.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~ 465 (796)
...++||.|||.|+.+..|+-. .|..++..+..+..|+..+.....-...++..+.+.+-.+.+.||+|++-.|+.|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 4679999999999999977653 7888999988887776443332222245666667666545579999999887544
Q ss_pred ccc-chHHHHHHHHhhcCCCcEEEEEe
Q 003776 466 WHI-EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 466 w~~-d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
... |...+|+.+...|+|+|++++-.
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 443 67899999999999999999753
No 145
>PHA03412 putative methyltransferase; Provisional
Probab=98.25 E-value=4.3e-06 Score=88.01 Aligned_cols=93 Identities=13% Similarity=0.110 Sum_probs=65.4
Q ss_pred CCEEEEECCCCchhHHHHhhC-------CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCC
Q 003776 390 TRVVLDVGCGVASFGGFLFDR-------GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARC 462 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~-------~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~ 462 (796)
+.+|||+|||+|.++..++.+ .|+++|+++.++..|+.. ...+.+...|....++ +++||+|+++..
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n-----~~~~~~~~~D~~~~~~-~~~FDlIIsNPP 123 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI-----VPEATWINADALTTEF-DTLFDMAISNPP 123 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh-----ccCCEEEEcchhcccc-cCCccEEEECCC
Confidence 579999999999999887642 799999999877666522 2234566677655554 468999999875
Q ss_pred Cccccc-c----------hHHHHHHHHhhcCCCcEEE
Q 003776 463 RVPWHI-E----------GGKLLLELNRVLRPGGFFI 488 (796)
Q Consensus 463 ~l~w~~-d----------~~~~L~Ei~RVLKPGG~fv 488 (796)
+..... + ...++..+.|+|+||++++
T Consensus 124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~IL 160 (241)
T PHA03412 124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFII 160 (241)
T ss_pred CCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEe
Confidence 442111 1 2357777888777777633
No 146
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.25 E-value=1.5e-05 Score=84.57 Aligned_cols=133 Identities=17% Similarity=0.226 Sum_probs=88.5
Q ss_pred cHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEc--
Q 003776 369 GALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVM-- 442 (796)
Q Consensus 369 ~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~-- 442 (796)
....+.+.+.+.+.+..+.+ +..+||+|||+|.++..|+.. .|+++|.++..+.-|. ..|+..++...+.+.
T Consensus 129 ETEE~V~~Vid~~~~~~~~~-~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~-eN~qr~~l~g~i~v~~~ 206 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEHSK-HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAK-ENAQRLKLSGRIEVIHN 206 (328)
T ss_pred cHHHHHHHHHHHHhhhhhcc-cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHH-HHHHHHhhcCceEEEec
Confidence 45677777777776544433 458999999999998888763 8999999998887775 555554444322222
Q ss_pred --C---CCCCCCCCCceeEEEEcCCCcccccchH--------------------------HHHHHHHhhcCCCcEEEEEe
Q 003776 443 --G---TERLPFPGIVFDAVHCARCRVPWHIEGG--------------------------KLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 443 --d---~e~LPfpd~SFDlVvss~~~l~w~~d~~--------------------------~~L~Ei~RVLKPGG~fv~s~ 491 (796)
. ....+...+.+|+++|+..++... |.. .++.-+.|.|+|||.+.|..
T Consensus 207 ~me~d~~~~~~l~~~~~dllvsNPPYI~~d-D~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 207 IMESDASDEHPLLEGKIDLLVSNPPYIRKD-DNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred ccccccccccccccCceeEEecCCCccccc-chhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 1 134456678999999998655432 111 34556779999999999983
Q ss_pred CCCCCCchHHHHHH
Q 003776 492 TPVYQKLPEDVEIW 505 (796)
Q Consensus 492 ~~~~~~l~El~~~~ 505 (796)
.....-+.+...|
T Consensus 286 -~~~~~~~~lv~~~ 298 (328)
T KOG2904|consen 286 -VERKEHSYLVRIW 298 (328)
T ss_pred -cccccCcHHHHHH
Confidence 3333344455544
No 147
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.24 E-value=6.3e-06 Score=99.62 Aligned_cols=102 Identities=16% Similarity=0.097 Sum_probs=74.5
Q ss_pred CCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC---eEEEEcCCCC-CCCCCCceeEEEEcCC
Q 003776 390 TRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP---AISAVMGTER-LPFPGIVFDAVHCARC 462 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~---~~~~v~d~e~-LPfpd~SFDlVvss~~ 462 (796)
+.+|||+|||+|.++..++.. .|+++|+++.++..++... ...++. +.+...|... +.-..++||+|++...
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~-~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNF-ALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH-HHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 679999999999999999874 5999999999999888444 444553 5666676522 2111468999999754
Q ss_pred Cccccc----------chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 463 RVPWHI----------EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 463 ~l~w~~----------d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
.+.-.. +...++..+.++|+|||.|+++..
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 332111 235678888999999999998744
No 148
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.21 E-value=6.6e-06 Score=90.23 Aligned_cols=97 Identities=22% Similarity=0.195 Sum_probs=70.1
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCC-CCCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPF-PGIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPf-pd~SFDlVvss~~~l 464 (796)
++.+|||+|||+|.++..|+.+ .|+++|+++.++..|+ +.+...++. +.+...|+..+.. ..+.||+|++...
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~-~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP-- 249 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAK-QSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP-- 249 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC--
Confidence 3579999999999999999875 7999999999998887 555566664 5677777654432 3457999999752
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.......+.++...++|++.++++
T Consensus 250 --r~G~~~~~~~~l~~~~~~~ivyvs 273 (315)
T PRK03522 250 --RRGIGKELCDYLSQMAPRFILYSS 273 (315)
T ss_pred --CCCccHHHHHHHHHcCCCeEEEEE
Confidence 112223344444557898888877
No 149
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.21 E-value=1.6e-05 Score=71.00 Aligned_cols=97 Identities=31% Similarity=0.394 Sum_probs=67.3
Q ss_pred EEEECCCCchhH--HHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCC--CCCCC-CceeEEEEcCCCc
Q 003776 393 VLDVGCGVASFG--GFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTER--LPFPG-IVFDAVHCARCRV 464 (796)
Q Consensus 393 VLDIGCGtG~~a--~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~--LPfpd-~SFDlVvss~~~l 464 (796)
+||+|||+|... ..+... .++++|+++.++..+...... .+.. +.+...+... +++.. ..||++ +..+..
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999843 333332 688899999887764322222 3222 3455555544 78887 489999 655433
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
++. .....+.++.++|+|+|.+++...
T Consensus 130 ~~~-~~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 130 HLL-PPAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred hcC-CHHHHHHHHHHhcCCCcEEEEEec
Confidence 333 378999999999999999998744
No 150
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.19 E-value=2.2e-05 Score=81.01 Aligned_cols=118 Identities=11% Similarity=0.007 Sum_probs=75.2
Q ss_pred cccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh---CCeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEc
Q 003776 367 KNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD---RGVLTMSFAPKDEHEAQVQFALERGIP-AISAVM 442 (796)
Q Consensus 367 ~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~---~~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~ 442 (796)
+.......+.+...+... ..+.+|||+|||+|.++..++. ..|+++|+++..+..++ +.+...++. +.+...
T Consensus 34 Rp~~d~v~e~l~~~l~~~---~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~-~Nl~~~~~~~v~~~~~ 109 (199)
T PRK10909 34 RPTTDRVRETLFNWLAPV---IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLI-KNLATLKAGNARVVNT 109 (199)
T ss_pred CcCCHHHHHHHHHHHhhh---cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHH-HHHHHhCCCcEEEEEc
Confidence 444455555555555321 2356999999999999985443 28999999998877666 444444543 455556
Q ss_pred CCC-CCCCCCCceeEEEEcCCCcccccc-hHHHHHHHHh--hcCCCcEEEEEe
Q 003776 443 GTE-RLPFPGIVFDAVHCARCRVPWHIE-GGKLLLELNR--VLRPGGFFIWSA 491 (796)
Q Consensus 443 d~e-~LPfpd~SFDlVvss~~~l~w~~d-~~~~L~Ei~R--VLKPGG~fv~s~ 491 (796)
|.. .++.....||+|+++.. +... ...++..+.. +|+|+|++++..
T Consensus 110 D~~~~l~~~~~~fDlV~~DPP---y~~g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 110 NALSFLAQPGTPHNVVFVDPP---FRKGLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred hHHHHHhhcCCCceEEEECCC---CCCChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 642 23333457999999864 2222 2344454444 489999999873
No 151
>PRK03612 spermidine synthase; Provisional
Probab=98.18 E-value=8.2e-06 Score=95.44 Aligned_cols=104 Identities=18% Similarity=0.123 Sum_probs=73.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHH--HHH-H----cCCCeEEEEcCCCC-CCCCCCcee
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQ--FAL-E----RGIPAISAVMGTER-LPFPGIVFD 455 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q--~A~-e----rgl~~~~~v~d~e~-LPfpd~SFD 455 (796)
+++++|||||||+|..+..++++ +|+++|+++.++..++.. +.. . ....+.+...|... +....++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 35789999999999999888764 799999999988877742 111 1 11234556666533 333347899
Q ss_pred EEEEcCCCcccccc-----hHHHHHHHHhhcCCCcEEEEEeC
Q 003776 456 AVHCARCRVPWHIE-----GGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 456 lVvss~~~l~w~~d-----~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+|++... .++... ...+++.+.++|||||.|++...
T Consensus 376 vIi~D~~-~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 376 VIIVDLP-DPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred EEEEeCC-CCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 9999753 333221 24688999999999999998643
No 152
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.09 E-value=8.9e-06 Score=85.30 Aligned_cols=99 Identities=20% Similarity=0.200 Sum_probs=68.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCR 463 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~ 463 (796)
....+|||||+|+|.++..++++ +++.+|+ |..+..++ + .-.+.+..+|.. -|+|. +|+|+....+
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~-----~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vL 168 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAK-----E-ADRVEFVPGDFF-DPLPV--ADVYLLRHVL 168 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHH-----H-TTTEEEEES-TT-TCCSS--ESEEEEESSG
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhccc-----c-ccccccccccHH-hhhcc--ccceeeehhh
Confidence 34679999999999999999875 7888888 43443333 2 334566666664 56665 9999998752
Q ss_pred ccccc-chHHHHHHHHhhcCCC--cEEEEEeCCCCC
Q 003776 464 VPWHI-EGGKLLLELNRVLRPG--GFFIWSATPVYQ 496 (796)
Q Consensus 464 l~w~~-d~~~~L~Ei~RVLKPG--G~fv~s~~~~~~ 496 (796)
..|.. +-..+|+.+++.|+|| |++++..+....
T Consensus 169 h~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 169 HDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp GGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred hhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 33332 3468999999999999 999987655443
No 153
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=3.7e-05 Score=81.28 Aligned_cols=97 Identities=18% Similarity=0.172 Sum_probs=75.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCA 460 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss 460 (796)
.++.+|||.|.|+|.++.+|+.. +|+++++-+.....|+.++.. .++. +.+...|....-++. .||+|+.-
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~-~~l~d~v~~~~~Dv~~~~~~~-~vDav~LD 170 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSE-FGLGDRVTLKLGDVREGIDEE-DVDAVFLD 170 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHH-hccccceEEEecccccccccc-ccCEEEEc
Confidence 46899999999999999999953 899999998887777754443 3433 455556665554554 89999985
Q ss_pred CCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 461 RCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 461 ~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
. ++|..+|..+..+|+|||.+++-.+
T Consensus 171 m------p~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 171 L------PDPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred C------CChHHHHHHHHHHhCCCcEEEEEcC
Confidence 4 4888999999999999999997633
No 154
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.09 E-value=1.3e-05 Score=84.39 Aligned_cols=89 Identities=18% Similarity=0.178 Sum_probs=60.4
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeE-EEEcCC-----CCCCCCCCceeEEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAI-SAVMGT-----ERLPFPGIVFDAVHC 459 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~-~~v~d~-----e~LPfpd~SFDlVvs 459 (796)
.+.+|||+|||||.|+..|+++ .|+++|+++.|++....+ ...+. +...+. +.++..-..||++++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~-----~~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsfi 149 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQ-----DERVKVLERTNIRYVTPADIFPDFATFDVSFI 149 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhc-----CCCeeEeecCCcccCCHhHcCCCceeeeEEEe
Confidence 4779999999999999999876 799999999887653222 11111 111122 222222247888888
Q ss_pred cCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 460 ARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 460 s~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+++ ..|..+.++|+| |.+++-.-
T Consensus 150 S~~---------~~l~~i~~~l~~-~~~~~L~K 172 (228)
T TIGR00478 150 SLI---------SILPELDLLLNP-NDLTLLFK 172 (228)
T ss_pred ehH---------hHHHHHHHHhCc-CeEEEEcC
Confidence 753 358899999999 88776533
No 155
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.09 E-value=2.1e-05 Score=82.36 Aligned_cols=101 Identities=19% Similarity=0.373 Sum_probs=67.8
Q ss_pred CCEEEEECCCCchhHHHHhh----CCeEEEeCChhhHHHHHHHHHH----HcCCC-------------------------
Q 003776 390 TRVVLDVGCGVASFGGFLFD----RGVLTMSFAPKDEHEAQVQFAL----ERGIP------------------------- 436 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~----~~V~gvDiSp~dl~~A~~q~A~----ergl~------------------------- 436 (796)
+..+|||||..|.++..+++ +.|+|+||++..+..|+...-. +.-+.
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t 138 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFT 138 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccccc
Confidence 67899999999999999987 3899999999988887643210 00000
Q ss_pred -----e-E----EEEcC-CCCCCCCCCceeEEEEcC----CCccccc-chHHHHHHHHhhcCCCcEEEEE
Q 003776 437 -----A-I----SAVMG-TERLPFPGIVFDAVHCAR----CRVPWHI-EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 437 -----~-~----~~v~d-~e~LPfpd~SFDlVvss~----~~l~w~~-d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
. . -.+.. ..-|-+....||+|+|.. ..+.|+. -+..+|+.|.+.|.|||+|++.
T Consensus 139 ~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 139 TDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 0 0 00111 111223456799999842 1244554 3368999999999999999986
No 156
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.06 E-value=1.6e-05 Score=90.70 Aligned_cols=97 Identities=25% Similarity=0.283 Sum_probs=69.9
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCC----CCCCCCceeEEEEcC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTER----LPFPGIVFDAVHCAR 461 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~----LPfpd~SFDlVvss~ 461 (796)
++.+|||+|||+|.++..|+.. .|+++|+++.++..|+ +.+...++. +.+...+... +++.+++||+|+...
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~-~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQ-QNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHH-HHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence 4579999999999999999874 7999999999998887 444555554 4566666532 334456899999865
Q ss_pred CCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 462 CRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 462 ~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.... -...++..+.+ |+|++.++++
T Consensus 371 Pr~G---~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 371 PRKG---CAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred CCCC---CCHHHHHHHHh-cCCCEEEEEc
Confidence 3111 12456665554 8999988876
No 157
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.04 E-value=1.7e-05 Score=86.15 Aligned_cols=123 Identities=15% Similarity=0.173 Sum_probs=76.0
Q ss_pred ccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCc----hhHHHHhh--------CCeEEEeCChhhHHHHHHHHHH
Q 003776 364 TQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVA----SFGGFLFD--------RGVLTMSFAPKDEHEAQVQFAL 431 (796)
Q Consensus 364 t~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG----~~a~~La~--------~~V~gvDiSp~dl~~A~~q~A~ 431 (796)
|.|.....++. .|.+.+.. ....-+|+..||+|| +++..|.+ -.|+|+|++...+..|+.-.-.
T Consensus 94 T~FFRd~~~f~-~L~~~~~~---~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~ 169 (287)
T PRK10611 94 TAFFREAHHFP-ILAEHARR---RSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYR 169 (287)
T ss_pred CCccCCcHHHH-HHHHHHHh---cCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCC
Confidence 44555555553 33333221 122469999999999 45555544 1699999999998887643100
Q ss_pred ---HcCC----------------------------CeEEEEcCCCCCCCC-CCceeEEEEcCCCccccc-chHHHHHHHH
Q 003776 432 ---ERGI----------------------------PAISAVMGTERLPFP-GIVFDAVHCARCRVPWHI-EGGKLLLELN 478 (796)
Q Consensus 432 ---ergl----------------------------~~~~~v~d~e~LPfp-d~SFDlVvss~~~l~w~~-d~~~~L~Ei~ 478 (796)
-+++ .+.+...+....+++ .+.||+|+|-..+++... ....++..++
T Consensus 170 ~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~ 249 (287)
T PRK10611 170 QEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFV 249 (287)
T ss_pred HHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHH
Confidence 0010 023334444333443 578999999654333332 4579999999
Q ss_pred hhcCCCcEEEEE
Q 003776 479 RVLRPGGFFIWS 490 (796)
Q Consensus 479 RVLKPGG~fv~s 490 (796)
+.|+|||+|++.
T Consensus 250 ~~L~pgG~L~lG 261 (287)
T PRK10611 250 PLLKPDGLLFAG 261 (287)
T ss_pred HHhCCCcEEEEe
Confidence 999999999876
No 158
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.01 E-value=9.8e-05 Score=81.39 Aligned_cols=95 Identities=17% Similarity=0.212 Sum_probs=62.2
Q ss_pred ccHHHHHHHHHHhCccc----ccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC--e
Q 003776 368 NGALHYIDFIQESVPDV----AWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--A 437 (796)
Q Consensus 368 ~~a~~yid~L~e~Lp~i----~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~--~ 437 (796)
+++..|+..|.+.+... ...+...+|||||||+|.+...|+.+ .++|+|+++..+..|+...+...++. +
T Consensus 89 P~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I 168 (321)
T PRK11727 89 PGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAI 168 (321)
T ss_pred CcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence 44677887777765321 11124679999999999887777653 79999999999988885544431443 2
Q ss_pred EEEEc-CCCCC----CCCCCceeEEEEcCC
Q 003776 438 ISAVM-GTERL----PFPGIVFDAVHCARC 462 (796)
Q Consensus 438 ~~~v~-d~e~L----Pfpd~SFDlVvss~~ 462 (796)
.+... +...+ ..+.+.||+|+|+..
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcNPP 198 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCNPP 198 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeCCC
Confidence 23222 22221 134678999999974
No 159
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.00 E-value=1.2e-05 Score=83.88 Aligned_cols=102 Identities=21% Similarity=0.149 Sum_probs=68.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHc------------CCCeEEEEcCCCCCCCCC-C
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALER------------GIPAISAVMGTERLPFPG-I 452 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~er------------gl~~~~~v~d~e~LPfpd-~ 452 (796)
.+..+||..|||.|.-+..|+++ +|+|+|+|+..+..+..+..... .-.+.+.++|.-.++-.. +
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g 115 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVG 115 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHH
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcC
Confidence 45679999999999999999987 89999999976655532221100 012356677776665433 4
Q ss_pred ceeEEEEcCCCccccc-chHHHHHHHHhhcCCCcEEEE
Q 003776 453 VFDAVHCARCRVPWHI-EGGKLLLELNRVLRPGGFFIW 489 (796)
Q Consensus 453 SFDlVvss~~~l~w~~-d~~~~L~Ei~RVLKPGG~fv~ 489 (796)
.||+|+=..+++-.++ ....+...+.++|+|||.+++
T Consensus 116 ~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 116 KFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp SEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 7999996433222233 457899999999999999443
No 160
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.99 E-value=1e-06 Score=84.96 Aligned_cols=96 Identities=19% Similarity=0.311 Sum_probs=66.7
Q ss_pred cccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhcccccccccccccCCCCccccccccccccccccC
Q 003776 642 STVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKK 720 (796)
Q Consensus 642 ~~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~~ce~f~typrtyDl~Ha~~~~s~~~~ 720 (796)
..-.+|||+|||.|.|+..|...+. .|+-+|.. ..+.. +-+....++-.++.. .+++||+|++.++|....
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~~~~~~~-~~~~fD~i~~~~~l~~~~- 92 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFDAQDPPF-PDGSFDLIICNDVLEHLP- 92 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEECHTHHC-HSSSEEEEEEESSGGGSS-
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhhhhhhhc-cccchhhHhhHHHHhhcc-
Confidence 3466899999999999999988766 33333333 22222 222222222222211 258999999999998876
Q ss_pred CcchHHHHHhhcccccCCcEEEEeccH
Q 003776 721 RCNLVAVVAEVDRILRPEGKLIVRDDV 747 (796)
Q Consensus 721 rC~~~~~l~E~DRiLRP~G~~i~rd~~ 747 (796)
....+|-+|=|+|+|||++++.+..
T Consensus 93 --d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 93 --DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp --HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred --cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 4788999999999999999998654
No 161
>PLN02672 methionine S-methyltransferase
Probab=97.99 E-value=2.9e-05 Score=96.66 Aligned_cols=100 Identities=15% Similarity=0.183 Sum_probs=70.6
Q ss_pred CCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCC-----------------CeEEEEcCCCCCC
Q 003776 390 TRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGI-----------------PAISAVMGTERLP 448 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl-----------------~~~~~v~d~e~LP 448 (796)
+.+|||||||+|.++..|+.. .|+++|+++.++..|+.... ..++ .+.+...|....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~-~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~- 196 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLY-LNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY- 196 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-HcCcccccccccccccccccccEEEEECchhhh-
Confidence 468999999999999998763 69999999999988874443 3221 245566664322
Q ss_pred CCC--CceeEEEEcCCCccccc---------------------------------ch----HHHHHHHHhhcCCCcEEEE
Q 003776 449 FPG--IVFDAVHCARCRVPWHI---------------------------------EG----GKLLLELNRVLRPGGFFIW 489 (796)
Q Consensus 449 fpd--~SFDlVvss~~~l~w~~---------------------------------d~----~~~L~Ei~RVLKPGG~fv~ 489 (796)
+.. ..||+|+|+..++.... |. ..++.+..++|+|||.+++
T Consensus 197 ~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 197 CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 222 36999999876553210 00 3567778899999999998
Q ss_pred Ee
Q 003776 490 SA 491 (796)
Q Consensus 490 s~ 491 (796)
-.
T Consensus 277 Ei 278 (1082)
T PLN02672 277 NM 278 (1082)
T ss_pred EE
Confidence 63
No 162
>PLN02476 O-methyltransferase
Probab=97.97 E-value=4.3e-05 Score=82.57 Aligned_cols=99 Identities=12% Similarity=0.013 Sum_probs=73.6
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCC-CCCC-C----CCCcee
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGT-ERLP-F----PGIVFD 455 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~-e~LP-f----pd~SFD 455 (796)
+..+|||||+|+|..+..|+.. .|+++|.++.....|+.. ..+.|+. +.+..+++ +.|+ + ..++||
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n-~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRY-YELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 3679999999999999988863 689999999888777744 4456664 45555654 3232 1 136899
Q ss_pred EEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 456 AVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 456 lVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+|+.-. +-.+...+|..+.+.|+|||.+++...
T Consensus 197 ~VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 197 FAFVDA----DKRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred EEEECC----CHHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 999854 233557889999999999999998644
No 163
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.96 E-value=2.8e-05 Score=90.65 Aligned_cols=101 Identities=15% Similarity=0.193 Sum_probs=77.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEc-CCCCC--CCCCCceeEEEEc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVM-GTERL--PFPGIVFDAVHCA 460 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~-d~e~L--Pfpd~SFDlVvss 460 (796)
.....+||||||.|.+...++.. .++|+++...-+..+. +.+...++....+.. ++..+ -|+++++|.|+.+
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~-~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVL-KLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHH-HHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 45678999999999999999875 8999999987776665 445566776544433 33222 2778999999998
Q ss_pred CCCcccccc--------hHHHHHHHHhhcCCCcEEEEE
Q 003776 461 RCRVPWHIE--------GGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 461 ~~~l~w~~d--------~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+. -+|.-. -+.+|..+.++|||||.|.+.
T Consensus 425 FP-DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 425 FP-DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred CC-CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 86 788431 268999999999999999987
No 164
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.93 E-value=2.1e-05 Score=81.00 Aligned_cols=101 Identities=22% Similarity=0.366 Sum_probs=59.8
Q ss_pred CCCEEEEECCCCc----hhHHHHhh------C---CeEEEeCChhhHHHHHHHH------------HHHc------C---
Q 003776 389 RTRVVLDVGCGVA----SFGGFLFD------R---GVLTMSFAPKDEHEAQVQF------------ALER------G--- 434 (796)
Q Consensus 389 ~~~~VLDIGCGtG----~~a~~La~------~---~V~gvDiSp~dl~~A~~q~------------A~er------g--- 434 (796)
..-+|+-+||++| +++..|.+ . .|+|+|+++..+..|+.-. .+++ +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4579999999999 45555554 1 7999999999888776321 0011 0
Q ss_pred -------CCeEEEEcCCCCCCCCCCceeEEEEcCCCccccc--chHHHHHHHHhhcCCCcEEEEE
Q 003776 435 -------IPAISAVMGTERLPFPGIVFDAVHCARCRVPWHI--EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 435 -------l~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~--d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
-.+.+...+....+.+.+.||+|+|-.. +.+.. ....++..+++.|+|||+|++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNV-lIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNV-LIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SS-GGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCE-EEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 0134555554443344578999999764 33333 3368999999999999999987
No 165
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.93 E-value=3.8e-05 Score=79.58 Aligned_cols=100 Identities=21% Similarity=0.179 Sum_probs=73.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCC-CCCC-----CCCCcee
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGT-ERLP-----FPGIVFD 455 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~-e~LP-----fpd~SFD 455 (796)
+.++||+|||++|+.+..|+.. .|+++|+++.....|+ ++..+.|+. +.+...++ +-|+ .+.+.||
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~-~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIAR-ENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHH-HHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHH-HHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 3679999999999999999863 8999999998877776 444555653 55666654 2222 1246899
Q ss_pred EEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCC
Q 003776 456 AVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 456 lVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
+|+.-. ...+...+|..+.+.|+|||.+++....
T Consensus 124 ~VFiDa----~K~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 124 FVFIDA----DKRNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp EEEEES----TGGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred EEEEcc----cccchhhHHHHHhhhccCCeEEEEcccc
Confidence 999864 2335678899999999999999987443
No 166
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.92 E-value=4.3e-05 Score=85.87 Aligned_cols=97 Identities=20% Similarity=0.119 Sum_probs=69.0
Q ss_pred CCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCC-CeEEEEcCCCCC-CCCCCceeEEEEcCCCcc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTERL-PFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl-~~~~~v~d~e~L-Pfpd~SFDlVvss~~~l~ 465 (796)
+.+|||+|||+|.++..|+.+ .|+++|+++..+..++ +.+...++ .+.+...+...+ +-....||+|+.....-
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~-~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~- 311 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQ-QSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR- 311 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHH-HHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC-
Confidence 579999999999999998865 8999999999988877 55555666 356666665432 21124699999986321
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 466 WHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 466 w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
--...++..+. .++|++.++++-
T Consensus 312 --G~~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 312 --GIGKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred --CCcHHHHHHHH-hcCCCeEEEEEe
Confidence 11234555554 479999999873
No 167
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.92 E-value=3.6e-05 Score=84.81 Aligned_cols=107 Identities=22% Similarity=0.229 Sum_probs=77.3
Q ss_pred ccCCCCCEEEEECCCCchhHHHH--hhCCeEEEeCChhhHHHHHHHHHHHcCCC-eE-EEEcCCCCCCCCCCceeEEEEc
Q 003776 385 AWGKRTRVVLDVGCGVASFGGFL--FDRGVLTMSFAPKDEHEAQVQFALERGIP-AI-SAVMGTERLPFPGIVFDAVHCA 460 (796)
Q Consensus 385 ~~~~~~~~VLDIGCGtG~~a~~L--a~~~V~gvDiSp~dl~~A~~q~A~ergl~-~~-~~v~d~e~LPfpd~SFDlVvss 460 (796)
...+++..|||-=||||++.... ...+++|.|++..|+..++..+-. .++. .. ....|+..+||+.++||.|++-
T Consensus 193 a~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~-y~i~~~~~~~~~Da~~lpl~~~~vdaIatD 271 (347)
T COG1041 193 ARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEY-YGIEDYPVLKVLDATNLPLRDNSVDAIATD 271 (347)
T ss_pred hccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhh-hCcCceeEEEecccccCCCCCCccceEEec
Confidence 33456889999999999876644 456899999999998887755433 3333 22 3334899999999999999995
Q ss_pred CCCccc---cc-c----hHHHHHHHHhhcCCCcEEEEEeC
Q 003776 461 RCRVPW---HI-E----GGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 461 ~~~l~w---~~-d----~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
..+-.- .. . ...+|..+.++||+||+++|..+
T Consensus 272 PPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 272 PPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 311000 00 1 25788899999999999999855
No 168
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.92 E-value=7.6e-05 Score=79.65 Aligned_cols=83 Identities=18% Similarity=0.153 Sum_probs=61.9
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF 449 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPf 449 (796)
..++.+.+.+.. .++.+|||||||+|.++..|+++ .|+++|+++.++..++...+. ...+.+..+|...+++
T Consensus 16 ~~~~~iv~~~~~----~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~ 89 (258)
T PRK14896 16 RVVDRIVEYAED----TDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDL 89 (258)
T ss_pred HHHHHHHHhcCC----CCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCc
Confidence 445566665542 34789999999999999999885 799999999988777644322 2235667778877777
Q ss_pred CCCceeEEEEcCC
Q 003776 450 PGIVFDAVHCARC 462 (796)
Q Consensus 450 pd~SFDlVvss~~ 462 (796)
+ .||.|+++..
T Consensus 90 ~--~~d~Vv~NlP 100 (258)
T PRK14896 90 P--EFNKVVSNLP 100 (258)
T ss_pred h--hceEEEEcCC
Confidence 6 4899999864
No 169
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.91 E-value=7.3e-05 Score=80.45 Aligned_cols=82 Identities=15% Similarity=0.098 Sum_probs=60.5
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCC
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFP 450 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfp 450 (796)
.++.+.+.+.. ..+.+|||||||+|.++..|+++ +|+++|+++.++..++..++ ...+.+..+|...++++
T Consensus 30 i~~~i~~~l~~----~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~ 102 (272)
T PRK00274 30 ILDKIVDAAGP----QPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA---EDNLTIIEGDALKVDLS 102 (272)
T ss_pred HHHHHHHhcCC----CCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc---cCceEEEEChhhcCCHH
Confidence 44555555542 34679999999999999999886 89999999998887764332 13456777888778776
Q ss_pred CCceeEEEEcC
Q 003776 451 GIVFDAVHCAR 461 (796)
Q Consensus 451 d~SFDlVvss~ 461 (796)
+-.+|.|+++.
T Consensus 103 ~~~~~~vv~Nl 113 (272)
T PRK00274 103 ELQPLKVVANL 113 (272)
T ss_pred HcCcceEEEeC
Confidence 43368899875
No 170
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.87 E-value=8.9e-05 Score=79.73 Aligned_cols=145 Identities=18% Similarity=0.180 Sum_probs=92.3
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHc------------------
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALER------------------ 433 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~er------------------ 433 (796)
++.|.+.+|.........+||--|||.|+++-.|+.+ .+.|.++|-.|+-... +....
T Consensus 41 ~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~--fiLn~~~~~~~~~I~Pf~~~~sn 118 (270)
T PF07942_consen 41 LDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASN--FILNHCSQPNQFTIYPFVHSFSN 118 (270)
T ss_pred HHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHH--HHHcccCCCCcEEEecceecccC
Confidence 4556666663222344679999999999999999987 7899999998875543 22211
Q ss_pred ---------C--CC-------------eEEEEcCCCCCCCCC---CceeEEEEcCCCcccccchHHHHHHHHhhcCCCcE
Q 003776 434 ---------G--IP-------------AISAVMGTERLPFPG---IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGF 486 (796)
Q Consensus 434 ---------g--l~-------------~~~~v~d~e~LPfpd---~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~ 486 (796)
. +| .....+|...+..++ ++||+|++.+ ++.-..+.-.+|..|.++|||||+
T Consensus 119 ~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkpgG~ 197 (270)
T PF07942_consen 119 QKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF-FIDTAENIIEYIETIEHLLKPGGY 197 (270)
T ss_pred CCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE-EeechHHHHHHHHHHHHHhccCCE
Confidence 0 00 000111111121223 6899999876 244444788999999999999998
Q ss_pred EEEEeCCCCCCchH-------HHHHHHHHHHHHHhhcceeeh
Q 003776 487 FIWSATPVYQKLPE-------DVEIWNAMSQLIKAMCWELVS 521 (796)
Q Consensus 487 fv~s~~~~~~~l~E-------l~~~~~~le~l~~~~~W~~v~ 521 (796)
+|=..|..|..-+. +.-.+.++..+...++|..+.
T Consensus 198 WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~ 239 (270)
T PF07942_consen 198 WINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEK 239 (270)
T ss_pred EEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEE
Confidence 88555666654432 222356666666666665554
No 171
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.86 E-value=9.2e-05 Score=77.37 Aligned_cols=111 Identities=15% Similarity=0.176 Sum_probs=80.5
Q ss_pred cHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEE
Q 003776 369 GALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAV 441 (796)
Q Consensus 369 ~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v 441 (796)
....++.++.+.. +..+||+||.+.|+.+..|+.. .++++|+++.+...|+..++ +.|+. +....
T Consensus 46 e~g~~L~~L~~~~-------~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~-~ag~~~~i~~~~ 117 (219)
T COG4122 46 ETGALLRLLARLS-------GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLA-EAGVDDRIELLL 117 (219)
T ss_pred hHHHHHHHHHHhc-------CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHH-HcCCcceEEEEe
Confidence 3445555655543 4789999999999999888764 69999999999888885554 45554 33344
Q ss_pred -cCC-CCCC-CCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 442 -MGT-ERLP-FPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 442 -~d~-e~LP-fpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.+. +.|. +..++||+||.-. +-.+.+.+|..+.++|||||++++..
T Consensus 118 ~gdal~~l~~~~~~~fDliFIDa----dK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 118 GGDALDVLSRLLDGSFDLVFIDA----DKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred cCcHHHHHHhccCCCccEEEEeC----ChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 243 2222 4568999999853 23366899999999999999999763
No 172
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.85 E-value=6.7e-05 Score=75.47 Aligned_cols=102 Identities=17% Similarity=0.120 Sum_probs=60.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcC----CCeEEEEcCC-CCC--C-CCCCcee
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERG----IPAISAVMGT-ERL--P-FPGIVFD 455 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~erg----l~~~~~v~d~-e~L--P-fpd~SFD 455 (796)
..+.+||+||||+|..+..++.. .|+..|..+ -+...+ ..+...+ ..+.....+= ..+ . +....||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~-~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLR-RNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHH-HHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHH-HHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 35789999999999877776654 899999987 444333 3333322 1222222221 111 1 2346899
Q ss_pred EEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 456 AVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 456 lVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+|+++-+ +........++.-+.++|+|+|.++++..
T Consensus 122 ~IlasDv-~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 122 VILASDV-LYDEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEEES---S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEEecc-cchHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 9999985 44444567888889999999999887744
No 173
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.84 E-value=3.8e-05 Score=84.36 Aligned_cols=97 Identities=19% Similarity=0.297 Sum_probs=68.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeE--EEEcCCCCCCCCCCceeEEEEcC--
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAI--SAVMGTERLPFPGIVFDAVHCAR-- 461 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~--~~v~d~e~LPfpd~SFDlVvss~-- 461 (796)
.+.+|||+|||||.++..-+++ .|++++.+... ..| .+.+...++... ...+..+.+-+|-...|+|+|-.
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a-~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFA-RKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHH-HHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 4789999999999988877764 89999998733 333 366666776643 33344555555567899999843
Q ss_pred -CCcccccchHHHHHHHHhhcCCCcEEE
Q 003776 462 -CRVPWHIEGGKLLLELNRVLRPGGFFI 488 (796)
Q Consensus 462 -~~l~w~~d~~~~L~Ei~RVLKPGG~fv 488 (796)
| +.+-.-+..+|-.=.+.|+|||.++
T Consensus 138 y~-Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 138 YF-LLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HH-HHHhhhhhhhhhhhhhccCCCceEc
Confidence 2 1111234577777789999999988
No 174
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.83 E-value=2.7e-05 Score=87.04 Aligned_cols=100 Identities=27% Similarity=0.363 Sum_probs=78.6
Q ss_pred CCCEEEEECCCCchhHHHHhh---CCeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEcCCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFD---RGVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARCR 463 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~---~~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss~~~ 463 (796)
++..+||+|||.|....++.. .++++++.++..+..+..... ..++. ..+.+.+....||++++||.|.+...
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~-~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~- 187 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAK-KAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV- 187 (364)
T ss_pred ccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHH-HHHhhhhcceehhhhhcCCCCccccCcEEEEee-
Confidence 455899999999998888865 389999999987777663333 22222 23355667888999999999999874
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 464 VPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 464 l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+.+.+++..++.|++|+|+|||+++..
T Consensus 188 ~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 188 VCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred cccCCcHHHHHHHHhcccCCCceEEeH
Confidence 555669999999999999999999953
No 175
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.83 E-value=0.00013 Score=77.45 Aligned_cols=81 Identities=20% Similarity=0.192 Sum_probs=58.5
Q ss_pred HHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCC
Q 003776 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFP 450 (796)
Q Consensus 373 yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfp 450 (796)
..+.+.+.+.. .++.+|||||||+|.++..|+++ .|+++|+++.++..++..... ...+.+...|...++++
T Consensus 17 i~~~i~~~~~~----~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 17 VIQKIVEAANV----LEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP 90 (253)
T ss_pred HHHHHHHhcCC----CCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh
Confidence 34555555542 34789999999999999999875 799999999888776533321 23456677787777765
Q ss_pred CCcee---EEEEcC
Q 003776 451 GIVFD---AVHCAR 461 (796)
Q Consensus 451 d~SFD---lVvss~ 461 (796)
.|| +|+++.
T Consensus 91 --~~d~~~~vvsNl 102 (253)
T TIGR00755 91 --DFPKQLKVVSNL 102 (253)
T ss_pred --HcCCcceEEEcC
Confidence 577 888874
No 176
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.81 E-value=4.2e-05 Score=78.14 Aligned_cols=113 Identities=19% Similarity=0.304 Sum_probs=78.0
Q ss_pred ccccccCccccceeeeccC-CCeEEEEeecCCCC-CChh----HHHhhcc--cccccccccccCCCCccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKD-ISVWVMNVISIDSP-DTLP----IIYERGL--FGIYHDWCESFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~-~~vwvmnv~p~~~~-~~l~----~i~eRGl--ig~~~~~ce~f~typrtyDl~Ha~~~~s 716 (796)
..|||+|||+|.++.+|.. .+- ..|+-+|.. ..+. .+-..|+ |-+++.-.+.++. +.+||+|-+..+
T Consensus 47 ~~VLDiGcGtG~~al~la~~~~~--~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIARPE--LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 5699999999988876653 221 234444443 2222 2333444 3444444445554 669999996541
Q ss_pred cccCCcchHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCCceEEEe
Q 003776 717 KIKKRCNLVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWEVRMT 767 (796)
Q Consensus 717 ~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W~~~~~ 767 (796)
..+..++-++-|+|||||++++-+.......+..+++.+-|.+...
T Consensus 122 -----~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 122 -----ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEV 167 (187)
T ss_pred -----cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeee
Confidence 3567888999999999999999888888889999999999986543
No 177
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.80 E-value=0.00015 Score=79.10 Aligned_cols=97 Identities=22% Similarity=0.274 Sum_probs=66.4
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHc-CCCeEEEEcCCCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALER-GIPAISAVMGTERLP 448 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~er-gl~~~~~v~d~e~LP 448 (796)
.+++.+.+.+.. .++.+|||||||+|.++..|+.+ .|+++|+++.++..++..++... ...+.+...|+..++
T Consensus 23 ~i~~~Iv~~~~~----~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 23 LVLDKIVEKAAI----KPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE 98 (294)
T ss_pred HHHHHHHHhcCC----CCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc
Confidence 345556655542 35779999999999999999875 79999999999888875544322 123566777765555
Q ss_pred CCCCceeEEEEcCCCcccccchHHHHHHH
Q 003776 449 FPGIVFDAVHCARCRVPWHIEGGKLLLEL 477 (796)
Q Consensus 449 fpd~SFDlVvss~~~l~w~~d~~~~L~Ei 477 (796)
++ .||+|+++. ++....+.++.-+
T Consensus 99 ~~--~~d~VvaNl---PY~Istpil~~ll 122 (294)
T PTZ00338 99 FP--YFDVCVANV---PYQISSPLVFKLL 122 (294)
T ss_pred cc--ccCEEEecC---CcccCcHHHHHHH
Confidence 54 689999874 4554344444333
No 178
>PLN02823 spermine synthase
Probab=97.78 E-value=0.00018 Score=79.96 Aligned_cols=102 Identities=16% Similarity=0.175 Sum_probs=71.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHc----CCCeEEEEcCC-CCCCCCCCceeEEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALER----GIPAISAVMGT-ERLPFPGIVFDAVHC 459 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~er----gl~~~~~v~d~-e~LPfpd~SFDlVvs 459 (796)
.+++||.||+|.|..+..+++. +|+++|+++..+..++..+.... ...+.+++.|. .-|....+.||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4689999999999999988774 68999999988877764443211 23355666664 223334578999998
Q ss_pred cCCCccc------ccchHHHHH-HHHhhcCCCcEEEEEe
Q 003776 460 ARCRVPW------HIEGGKLLL-ELNRVLRPGGFFIWSA 491 (796)
Q Consensus 460 s~~~l~w------~~d~~~~L~-Ei~RVLKPGG~fv~s~ 491 (796)
-.. -++ +.-...++. .+.+.|+|||+|++..
T Consensus 183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 631 111 112346777 8999999999998753
No 179
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.75 E-value=0.00017 Score=76.73 Aligned_cols=107 Identities=21% Similarity=0.247 Sum_probs=74.7
Q ss_pred HHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCC
Q 003776 375 DFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERL 447 (796)
Q Consensus 375 d~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~L 447 (796)
..|...+.. .++.+||+.|.|+|.++.+|+.. .|+..|+.......|+..+. ..|+. +.+...|...-
T Consensus 30 ~~I~~~l~i----~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~-~~gl~~~v~~~~~Dv~~~ 104 (247)
T PF08704_consen 30 SYILMRLDI----RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFE-RHGLDDNVTVHHRDVCEE 104 (247)
T ss_dssp HHHHHHTT------TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH-HTTCCTTEEEEES-GGCG
T ss_pred HHHHHHcCC----CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHH-HcCCCCCceeEecceecc
Confidence 344444443 56899999999999999999863 89999999988888875554 45554 56667776433
Q ss_pred CCC---CCceeEEEEcCCCcccccchHHHHHHHHhhc-CCCcEEEEEeC
Q 003776 448 PFP---GIVFDAVHCARCRVPWHIEGGKLLLELNRVL-RPGGFFIWSAT 492 (796)
Q Consensus 448 Pfp---d~SFDlVvss~~~l~w~~d~~~~L~Ei~RVL-KPGG~fv~s~~ 492 (796)
.|. +..||+|+.-+ ++|..+|..+.++| ||||+|++-.+
T Consensus 105 g~~~~~~~~~DavfLDl------p~Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 105 GFDEELESDFDAVFLDL------PDPWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp --STT-TTSEEEEEEES------SSGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred cccccccCcccEEEEeC------CCHHHHHHHHHHHHhcCCceEEEECC
Confidence 332 36799999864 36778999999999 99999986533
No 180
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.74 E-value=1.7e-05 Score=81.07 Aligned_cols=121 Identities=19% Similarity=0.306 Sum_probs=84.4
Q ss_pred cCCCCccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC
Q 003776 359 FPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP 436 (796)
Q Consensus 359 Fpgggt~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~ 436 (796)
|-|-|.+|--...++..++.---| .|+..+.++||+|+|.|-++..++.. .|.+.++|..|..+- ++.+..
T Consensus 84 ~lgrGsMFifSe~QF~klL~i~~p--~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL-----~kk~yn 156 (288)
T KOG3987|consen 84 FLGRGSMFIFSEEQFRKLLVIGGP--AWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRL-----KKKNYN 156 (288)
T ss_pred ccccCceEEecHHHHHHHHhcCCC--ccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHH-----hhcCCc
Confidence 667788887777777665543323 36666789999999999999988876 788888877665333 344433
Q ss_pred eEEEEcCCCCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCC-CcEEEEEe
Q 003776 437 AISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRP-GGFFIWSA 491 (796)
Q Consensus 437 ~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKP-GG~fv~s~ 491 (796)
+.... ..--.+-.||+|.|.. ++.-|-++..+|..|+.+|+| .|..+++.
T Consensus 157 Vl~~~----ew~~t~~k~dli~clN-lLDRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 157 VLTEI----EWLQTDVKLDLILCLN-LLDRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred eeeeh----hhhhcCceeehHHHHH-HHHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 22111 1111223599999964 466677899999999999999 89888764
No 181
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.00016 Score=73.55 Aligned_cols=69 Identities=22% Similarity=0.130 Sum_probs=53.8
Q ss_pred CCCEEEEECCCCchhHHHHh--h-CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcC
Q 003776 389 RTRVVLDVGCGVASFGGFLF--D-RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La--~-~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~ 461 (796)
.+++|||+|||||.++...+ . ..|+++|+++..+..++ +.+.+.+..+.+.+.|..++. ..||.|+.+.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r-~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNP 116 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIAR-ANAEELLGDVEFVVADVSDFR---GKFDTVIMNP 116 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHH-HHHHhhCCceEEEEcchhhcC---CccceEEECC
Confidence 36789999999998665444 3 38999999998887776 556666667788888877665 4588999975
No 182
>PLN02244 tocopherol O-methyltransferase
Probab=97.68 E-value=1.5e-05 Score=88.39 Aligned_cols=94 Identities=16% Similarity=0.178 Sum_probs=59.8
Q ss_pred ccccccccCccccceeeeccCC---CeEEEEeecCCCCCChhH----HHhhcccc----cccccccccCCCCcccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSPDTLPI----IYERGLFG----IYHDWCESFSTYPRTYDLLHA 711 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~~~l~~----i~eRGlig----~~~~~ce~f~typrtyDl~Ha 711 (796)
.-..|||+|||.|+++..|..+ .|..+.+.| ..+.. +-.+|+.. +..|.. .+|.-+.+||+|.+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~----~~i~~a~~~~~~~g~~~~v~~~~~D~~-~~~~~~~~FD~V~s 192 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSP----VQAARANALAAAQGLSDKVSFQVADAL-NQPFEDGQFDLVWS 192 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCH----HHHHHHHHHHHhcCCCCceEEEEcCcc-cCCCCCCCccEEEE
Confidence 3457999999999999888753 333333222 33332 23345421 122332 23332489999998
Q ss_pred ccccccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 712 DHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 712 ~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
...+..+. ....+|-||-|+|||||.++|.
T Consensus 193 ~~~~~h~~---d~~~~l~e~~rvLkpGG~lvi~ 222 (340)
T PLN02244 193 MESGEHMP---DKRKFVQELARVAAPGGRIIIV 222 (340)
T ss_pred CCchhccC---CHHHHHHHHHHHcCCCcEEEEE
Confidence 76655443 2456899999999999999985
No 183
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.68 E-value=0.00041 Score=75.25 Aligned_cols=111 Identities=15% Similarity=0.085 Sum_probs=75.4
Q ss_pred HHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHc----CCCeEEEEcCC-CC
Q 003776 376 FIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALER----GIPAISAVMGT-ER 446 (796)
Q Consensus 376 ~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~er----gl~~~~~v~d~-e~ 446 (796)
.+.-+++.+.++.+ ++||-||-|.|..++.+++. +++.+||++..+..++..+..-. ...+...+.|. +-
T Consensus 64 Eml~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~ 142 (282)
T COG0421 64 EMLAHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF 142 (282)
T ss_pred HHHHhchhhhCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH
Confidence 34455555555544 79999999999999999986 79999999977766653332222 12234455553 22
Q ss_pred CCCCCCceeEEEEcCCCcccccc------hHHHHHHHHhhcCCCcEEEEE
Q 003776 447 LPFPGIVFDAVHCARCRVPWHIE------GGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 447 LPfpd~SFDlVvss~~~l~w~~d------~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+.-...+||+|++-.. .... -..+++.++|+|+|+|.++..
T Consensus 143 v~~~~~~fDvIi~D~t---dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 143 LRDCEEKFDVIIVDST---DPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred HHhCCCcCCEEEEcCC---CCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 2322248999998531 1212 268999999999999999976
No 184
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=97.68 E-value=0.0011 Score=74.78 Aligned_cols=92 Identities=16% Similarity=0.034 Sum_probs=60.7
Q ss_pred EEEEECCCCchhHHHHhhCCeEEEeCChhhHHHHHHHHHHHcCCCeE--EEEcCCCCCCCCCCceeEEEEcCCCccccc-
Q 003776 392 VVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAI--SAVMGTERLPFPGIVFDAVHCARCRVPWHI- 468 (796)
Q Consensus 392 ~VLDIGCGtG~~a~~La~~~V~gvDiSp~dl~~A~~q~A~ergl~~~--~~v~d~e~LPfpd~SFDlVvss~~~l~w~~- 468 (796)
+||-|+=.-|.++..|+...++.+ -+....+.+..+.+...+++.. ........+ | +.+|+|+.- ++-..
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~~-~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~--~-~~~d~vl~~---~PK~~~ 119 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYSI-GDSYISELATRENLRLNGIDESSVKFLDSTADY--P-QQPGVVLIK---VPKTLA 119 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCee-ehHHHHHHHHHHHHHHcCCCcccceeecccccc--c-CCCCEEEEE---eCCCHH
Confidence 799999999999999997666544 2333445555566666676532 122212333 3 459998874 23222
Q ss_pred chHHHHHHHHhhcCCCcEEEEE
Q 003776 469 EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 469 d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.....|..+.++|.||+.++..
T Consensus 120 ~l~~~l~~l~~~l~~~~~ii~g 141 (378)
T PRK15001 120 LLEQQLRALRKVVTSDTRIIAG 141 (378)
T ss_pred HHHHHHHHHHhhCCCCCEEEEE
Confidence 3467888899999999998754
No 185
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.66 E-value=0.00011 Score=84.47 Aligned_cols=97 Identities=21% Similarity=0.232 Sum_probs=64.9
Q ss_pred CCEEEEECCCCchhHHHHhh--------CCeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCCCCCCCCCceeEEEE
Q 003776 390 TRVVLDVGCGVASFGGFLFD--------RGVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLPFPGIVFDAVHC 459 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~--------~~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e~LPfpd~SFDlVvs 459 (796)
...|||||||+|-++...++ ..|++++-++......+ +.....+. .+.++..+++.+..| ..+|+|||
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~-~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ-KRVNANGWGDKVTVIHGDMREVELP-EKVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH-HHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH-HHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEE
Confidence 56899999999988755443 27999999986554433 33334444 467777888888766 48999999
Q ss_pred cC-CCcccccchHHHHHHHHhhcCCCcEEE
Q 003776 460 AR-CRVPWHIEGGKLLLELNRVLRPGGFFI 488 (796)
Q Consensus 460 s~-~~l~w~~d~~~~L~Ei~RVLKPGG~fv 488 (796)
=. +.+....-.+.+|....|.|||||.++
T Consensus 265 ElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 265 ELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 42 222333344678999999999999988
No 186
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.66 E-value=2.5e-05 Score=80.65 Aligned_cols=94 Identities=24% Similarity=0.433 Sum_probs=61.0
Q ss_pred ccccccCccccceeeeccCC--CeEEEEeecCCCCCChhHHH----hhcccc---cc-cccccccCCCCccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSPDTLPIIY----ERGLFG---IY-HDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~~~l~~i~----eRGlig---~~-~~~ce~f~typrtyDl~Ha~~~ 714 (796)
+.|||+|||.|+++..|... ++-|.-+-+ ++.++..+- ++|+-+ ++ .|... . .+|.+||+|++..+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~--s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~-~-~~~~~fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTI--SPEQAEVGRERIRALGLQGRIRIFYRDSAK-D-PFPDTYDLVFGFEV 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHhcCCCcceEEEeccccc-C-CCCCCCCEeehHHH
Confidence 36899999999998887643 232222322 224444333 335422 22 23321 1 24678999998887
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
|....+ ...+|-++.|+|+|||++++.+
T Consensus 77 l~~~~~---~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 77 IHHIKD---KMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred HHhCCC---HHHHHHHHHHHcCCCCEEEEEE
Confidence 766543 5788999999999999999875
No 187
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.65 E-value=1.2e-05 Score=85.13 Aligned_cols=94 Identities=18% Similarity=0.225 Sum_probs=61.9
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHh----hcccc---ccc-ccccccCCCCcccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYE----RGLFG---IYH-DWCESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGlig---~~~-~~ce~f~typrtyDl~Ha~~~~ 715 (796)
..|||+|||.|.++..|..... .|+-+|.. ..+..+-+ .|+.. +++ +..+--+..+.+||+|.+..+|
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 4799999999999999987653 34444443 44444333 34422 111 2221112235899999988887
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
....+ ...+|-++-|+|+|||+++|-
T Consensus 123 ~~~~~---~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 123 EWVAD---PKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HhhCC---HHHHHHHHHHHcCCCeEEEEE
Confidence 65542 356899999999999999874
No 188
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.64 E-value=0.00052 Score=76.47 Aligned_cols=96 Identities=18% Similarity=0.187 Sum_probs=57.9
Q ss_pred cccccCccccceeeeccCC-CeEEEEeecCCCC-CChhH----HHhhcccccccccccccCCCCcccccccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPI----IYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIK 719 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~----i~eRGlig~~~~~ce~f~typrtyDl~Ha~~~~s~~~ 719 (796)
.|||+|||.|.++++|..+ |-. .|+-+|.. .-|.. +-..|+-+.++ +...++..+..||+|-++-.|-...
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~--~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g~ 275 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKI--RLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDGI 275 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCCc
Confidence 4999999999999988765 311 12223322 11211 11223333222 2233444468899999877663211
Q ss_pred --CCcchHHHHHhhcccccCCcEEEEe
Q 003776 720 --KRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 720 --~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
..-....++-++-|.|+|||.++|-
T Consensus 276 ~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 276 QTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred cccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 1123467899999999999999874
No 189
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00064 Score=68.77 Aligned_cols=99 Identities=20% Similarity=0.243 Sum_probs=70.9
Q ss_pred CCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
...+|+||||+|..+.+|++. -+.++|++|..+. +...-|+..+..+..+..|...- +..++.|+++.+..++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~-~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALE-ATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHH-HHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcC
Confidence 678999999999999999875 4789999996654 34466776666655555553211 2238899999887655
Q ss_pred ccccc--------------------hHHHHHHHHhhcCCCcEEEEE
Q 003776 465 PWHIE--------------------GGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 465 ~w~~d--------------------~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+-... ...+|.++..+|.|.|.|++.
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv 167 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLV 167 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEee
Confidence 53321 125677788899999999976
No 190
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=97.60 E-value=2.9e-05 Score=83.01 Aligned_cols=96 Identities=16% Similarity=0.230 Sum_probs=62.5
Q ss_pred ccccccCccccceeeeccCC--CeEEEEeecCCCC-CChhHHHhhc-------c--cccccccccccCCCCccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSP-DTLPIIYERG-------L--FGIYHDWCESFSTYPRTYDLLHAD 712 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~-~~l~~i~eRG-------l--ig~~~~~ce~f~typrtyDl~Ha~ 712 (796)
..|||+|||+|.++..|..+ +-+ +|+-+|-. .-|..+-+|. . |-+.+.=.+.+|.-+.+||+|.+.
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~~--~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSDG--KVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 46999999999998877653 111 23333433 4555554442 1 122222234555334799999987
Q ss_pred cccccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 713 HLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 713 ~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
..+..+. ....+|-||-|+|||||++++.|
T Consensus 153 ~~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 153 YGLRNVV---DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred cccccCC---CHHHHHHHHHHHcCcCcEEEEEE
Confidence 7766543 45778999999999999998864
No 191
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.58 E-value=0.00027 Score=75.29 Aligned_cols=97 Identities=10% Similarity=-0.024 Sum_probs=70.4
Q ss_pred CCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCC-CCCCC------CCCcee
Q 003776 390 TRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGT-ERLPF------PGIVFD 455 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~-e~LPf------pd~SFD 455 (796)
..+||+||+++|..+.+|+.. .|+++|.++.....|+..+. +.|+. +.+..+++ +.|+- ..++||
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~-~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQ-KAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHH-HCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 679999999999988888753 79999999987777764444 44543 45555554 33331 136899
Q ss_pred EEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 456 AVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 456 lVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+|+.-. +......+|..+.+.|+|||++++..
T Consensus 159 ~iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 159 FIFVDA----DKDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred EEEecC----CHHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 999854 23345788888899999999999763
No 192
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.57 E-value=0.00033 Score=70.96 Aligned_cols=99 Identities=24% Similarity=0.302 Sum_probs=68.0
Q ss_pred CCCCEEEEECCCCchhHHHHhh--C--C---------eEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFD--R--G---------VLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGI 452 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~--~--~---------V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~ 452 (796)
.++..|||--||+|++....+. . . ++|.|+++.++..++ +.+...++. +.+...|+..+|+.++
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~-~N~~~ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGAR-ENLKAAGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHH-HHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHH-HHHHhcccCCceEEEecchhhcccccC
Confidence 3578999999999998754432 2 3 679999999998887 455556654 4566778899998889
Q ss_pred ceeEEEEcCCCccccc------ch----HHHHHHHHhhcCCCcEEEEE
Q 003776 453 VFDAVHCARCRVPWHI------EG----GKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 453 SFDlVvss~~~l~w~~------d~----~~~L~Ei~RVLKPGG~fv~s 490 (796)
++|+|+++. +|-. +. ..++.++.|+|+|..+++++
T Consensus 106 ~~d~IvtnP---PyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 106 SVDAIVTNP---PYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp BSCEEEEE-----STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred CCCEEEECc---chhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 999999985 3332 11 36688899999995555554
No 193
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=97.56 E-value=7.1e-05 Score=76.49 Aligned_cols=93 Identities=14% Similarity=0.175 Sum_probs=59.8
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhH----HHhhcc--cccccccccccCCCCcccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPI----IYERGL--FGIYHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~----i~eRGl--ig~~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
..|||+|||.|.++.+|..+. ..|+-+|.. ..+.. +-..|+ -....|.. .++ ++..||+|.+..+|..
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~-~~~-~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENLPLRTDAYDIN-AAA-LNEDYDFIFSTVVFMF 106 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccch-hcc-ccCCCCEEEEeccccc
Confidence 479999999999998887653 234444543 33332 233453 12222322 222 3568999988777643
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEE
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIV 743 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~ 743 (796)
. +.-.+..++-++.|+|+|||++++
T Consensus 107 ~-~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 107 L-QAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred C-CHHHHHHHHHHHHHHhCCCcEEEE
Confidence 2 333567889999999999999554
No 194
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.55 E-value=0.00014 Score=76.04 Aligned_cols=131 Identities=21% Similarity=0.271 Sum_probs=79.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcC---CCeEEEEcCCCCC--CCCCCceeEEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERG---IPAISAVMGTERL--PFPGIVFDAVHC 459 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~erg---l~~~~~v~d~e~L--Pfpd~SFDlVvs 459 (796)
+.+.+|||...|-|+++...+++ .|+.++.+|.-+..|.+. --.++ ..+..+.+|+..+ .|++.+||+|+-
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lN-PwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLN-PWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccC-CCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 45889999999999999888775 788888888655443311 00111 1234455554222 478999999987
Q ss_pred cCCCccc--ccchHHHHHHHHhhcCCCcEEEE-EeCCCCCCchHHHHHHHHHHHHHHhhcceeeh
Q 003776 460 ARCRVPW--HIEGGKLLLELNRVLRPGGFFIW-SATPVYQKLPEDVEIWNAMSQLIKAMCWELVS 521 (796)
Q Consensus 460 s~~~l~w--~~d~~~~L~Ei~RVLKPGG~fv~-s~~~~~~~l~El~~~~~~le~l~~~~~W~~v~ 521 (796)
-...+.. ...-..+.+|++|+|||||.++= ...|+.. ..-+.....+....+..+|..+.
T Consensus 212 DPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r--yrG~d~~~gVa~RLr~vGF~~v~ 274 (287)
T COG2521 212 DPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR--YRGLDLPKGVAERLRRVGFEVVK 274 (287)
T ss_pred CCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc--cccCChhHHHHHHHHhcCceeee
Confidence 5422222 12346889999999999998773 3344322 22222333444444445555444
No 195
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=97.51 E-value=5.2e-05 Score=79.89 Aligned_cols=95 Identities=20% Similarity=0.240 Sum_probs=62.4
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhcc-cc-cccccccccCCCCcccccccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGL-FG-IYHDWCESFSTYPRTYDLLHADHLFSKIK 719 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGl-ig-~~~~~ce~f~typrtyDl~Ha~~~~s~~~ 719 (796)
....|||+|||.|.++..|..... .|+-+|-. ..+..+-+|+- +. +..|. +.++..+.+||+|-++..+. |.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~V~s~~~l~-~~ 116 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDI-ESLPLATATFDLAWSNLAVQ-WC 116 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCc-ccCcCCCCcEEEEEECchhh-hc
Confidence 456799999999999888865432 23333332 44555555531 11 22333 44554457999998765543 22
Q ss_pred CCcchHHHHHhhcccccCCcEEEEe
Q 003776 720 KRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 720 ~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
. .+..+|-||-|+|||||++++.
T Consensus 117 ~--d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 117 G--NLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred C--CHHHHHHHHHHHcCCCeEEEEE
Confidence 2 4567899999999999999986
No 196
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.51 E-value=0.0012 Score=71.32 Aligned_cols=119 Identities=17% Similarity=0.272 Sum_probs=78.1
Q ss_pred HHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC------CeEEEeCChhhHHHHHHHHHHHcCCCe--EEEEcCC--
Q 003776 375 DFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR------GVLTMSFAPKDEHEAQVQFALERGIPA--ISAVMGT-- 444 (796)
Q Consensus 375 d~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~------~V~gvDiSp~dl~~A~~q~A~ergl~~--~~~v~d~-- 444 (796)
..|.+.+..+......-+||||.||.|....-.+.. .|.-.|+++..+...+ +.++++|+.. .+...|+
T Consensus 121 ~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~-~li~~~gL~~i~~f~~~dAfd 199 (311)
T PF12147_consen 121 ELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR-ALIAERGLEDIARFEQGDAFD 199 (311)
T ss_pred HHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH-HHHHHcCCccceEEEecCCCC
Confidence 334443333333345779999999999865544432 6888999998887776 6677888764 5666654
Q ss_pred -CCCCCCCCceeEEEEcCCCcccc-cc---hHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 003776 445 -ERLPFPGIVFDAVHCARCRVPWH-IE---GGKLLLELNRVLRPGGFFIWSATPVYQ 496 (796)
Q Consensus 445 -e~LPfpd~SFDlVvss~~~l~w~-~d---~~~~L~Ei~RVLKPGG~fv~s~~~~~~ 496 (796)
..+.--.-..++++.+. ++.. .| ....|..+.++|.|||+++++..|-+.
T Consensus 200 ~~~l~~l~p~P~l~iVsG--L~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHP 254 (311)
T PF12147_consen 200 RDSLAALDPAPTLAIVSG--LYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHP 254 (311)
T ss_pred HhHhhccCCCCCEEEEec--chhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCc
Confidence 22221123468888775 3333 33 245788999999999999988544433
No 197
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.47 E-value=2.4e-05 Score=71.39 Aligned_cols=97 Identities=22% Similarity=0.302 Sum_probs=59.4
Q ss_pred cccccCccccceeeeccC--CCeEEEEeecCCCCCChhHHH----hhcccc----cccccccccCCCCcccccccccc-c
Q 003776 646 NVMDMRSVYGGFAAAMKD--ISVWVMNVISIDSPDTLPIIY----ERGLFG----IYHDWCESFSTYPRTYDLLHADH-L 714 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~--~~vwvmnv~p~~~~~~l~~i~----eRGlig----~~~~~ce~f~typrtyDl~Ha~~-~ 714 (796)
.|||+|||.|.++.+|.. ...=|..|=+.. ..+.++- ++++-. +..|+ ......+..||+|.+.+ .
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFPGARVVGVDISP--EMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTSEEEEEESSH--HHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECSGS
T ss_pred EEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECCCc
Confidence 589999999999999987 443333333322 2333222 233322 22344 22244455699999888 2
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
+..+-+......+|-.+-+.|||||+++|++
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2222222344567888999999999999974
No 198
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.47 E-value=6.7e-05 Score=80.41 Aligned_cols=100 Identities=26% Similarity=0.233 Sum_probs=71.0
Q ss_pred CCCEEEEECCCCchhHHHHhhCCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCccccc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHI 468 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~ 468 (796)
.+..+||+|||.|-....-....+++.|++...+..+ +..|.. ...++|+..+|+++.+||.+++.. .+||..
T Consensus 45 ~gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~~~a-----k~~~~~-~~~~ad~l~~p~~~~s~d~~lsia-vihhls 117 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLLGGA-----KRSGGD-NVCRADALKLPFREESFDAALSIA-VIHHLS 117 (293)
T ss_pred CcceeeecccCCcccCcCCCcceeeecchhhhhcccc-----ccCCCc-eeehhhhhcCCCCCCccccchhhh-hhhhhh
Confidence 4789999999999665432223578888876554333 233332 466788899999999999999975 355443
Q ss_pred ---chHHHHHHHHhhcCCCcEEEEEeCCCC
Q 003776 469 ---EGGKLLLELNRVLRPGGFFIWSATPVY 495 (796)
Q Consensus 469 ---d~~~~L~Ei~RVLKPGG~fv~s~~~~~ 495 (796)
....++.++.|+|||||..++.+-...
T Consensus 118 T~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 118 TRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred hHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 347899999999999998766543333
No 199
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.47 E-value=0.00036 Score=78.86 Aligned_cols=97 Identities=18% Similarity=0.069 Sum_probs=70.5
Q ss_pred CCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCe-EEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPA-ISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~-~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
..+|||++||+|.++..++.. .|+++|+++..+..++ +.+...++.. .+...|+..+......||+|+... .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~-~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP--~ 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIK-KNLELNGLENEKVFNKDANALLHEERKFDVVDIDP--F 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC--C
Confidence 458999999999999998653 6999999998887776 4445455553 355556543321145799999864 1
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
-.+..+|....+.++|||+++++.+
T Consensus 135 ---Gs~~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 135 ---GSPAPFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred ---CCcHHHHHHHHHHhcCCCEEEEEec
Confidence 2345777887888999999999854
No 200
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.46 E-value=0.0015 Score=66.80 Aligned_cols=98 Identities=13% Similarity=-0.050 Sum_probs=65.1
Q ss_pred CCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCC-CCCC-C--CCCceeEEEEc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGT-ERLP-F--PGIVFDAVHCA 460 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~-e~LP-f--pd~SFDlVvss 460 (796)
+.+|||++||+|.++..++.+ .|+++|.++..+..++ +.+...++. +.+...|. ..+. + ....||+|+..
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~-~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLK-ENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 679999999999999999876 6999999998877666 444444443 45566665 2222 1 12248888886
Q ss_pred CCCcccccchHHHHHHH--HhhcCCCcEEEEE
Q 003776 461 RCRVPWHIEGGKLLLEL--NRVLRPGGFFIWS 490 (796)
Q Consensus 461 ~~~l~w~~d~~~~L~Ei--~RVLKPGG~fv~s 490 (796)
..+- . .....++..+ ..+|+++|.+++.
T Consensus 129 PPy~-~-~~~~~~l~~l~~~~~l~~~~iiv~E 158 (189)
T TIGR00095 129 PPFF-N-GALQALLELCENNWILEDTVLIVVE 158 (189)
T ss_pred cCCC-C-CcHHHHHHHHHHCCCCCCCeEEEEE
Confidence 5321 1 1233444444 3479999998876
No 201
>PRK00536 speE spermidine synthase; Provisional
Probab=97.45 E-value=0.0019 Score=69.40 Aligned_cols=104 Identities=18% Similarity=0.062 Sum_probs=70.8
Q ss_pred HhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHH---H-cCCCeEEEEcCCCCCCCCCC
Q 003776 379 ESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFAL---E-RGIPAISAVMGTERLPFPGI 452 (796)
Q Consensus 379 e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~---e-rgl~~~~~v~d~e~LPfpd~ 452 (796)
-+.|.+.+ +.+++||=||.|.|..++.+++. +|+.+||++..+..++.-+-. . ....+.+.. ... .-..+
T Consensus 63 vHppl~~h-~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~--~~~~~ 138 (262)
T PRK00536 63 AHMGGCTK-KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLL--DLDIK 138 (262)
T ss_pred HHHHHhhC-CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhh--hccCC
Confidence 34443333 45799999999999999999987 799999999887666532211 1 112222222 111 11236
Q ss_pred ceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 453 VFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 453 SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+||+|+.-. + ....+++.++|+|+|||.|+....
T Consensus 139 ~fDVIIvDs--~----~~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 139 KYDLIICLQ--E----PDIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred cCCEEEEcC--C----CChHHHHHHHHhcCCCcEEEECCC
Confidence 899999863 1 357888999999999999997643
No 202
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.43 E-value=8.9e-05 Score=75.21 Aligned_cols=112 Identities=16% Similarity=0.205 Sum_probs=67.8
Q ss_pred cccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhH----HHhhcc--cccc-cccccccCCCCccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPI----IYERGL--FGIY-HDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~----i~eRGl--ig~~-~~~ce~f~typrtyDl~Ha~~~ 714 (796)
=++|||+|||.|.++..|... +- ..|+-+|.. ..+.+ +-+.|+ |-++ .|.. .++ ...+||+|-+..
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~--~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~-~~~-~~~~fD~I~s~~- 117 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPE--LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAE-DFQ-HEEQFDVITSRA- 117 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchh-hcc-ccCCccEEEehh-
Confidence 357999999999887765421 11 123333333 22222 223354 2222 2222 222 357899998654
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCC-ceEEE
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQ-WEVRM 766 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~-W~~~~ 766 (796)
+ ..+..++-.+.|+|||||.+++........++..+.+++| |....
T Consensus 118 ~------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~ 164 (181)
T TIGR00138 118 L------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEP 164 (181)
T ss_pred h------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceE
Confidence 1 2466778888999999999999877777777777776644 44443
No 203
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.43 E-value=6e-05 Score=83.15 Aligned_cols=95 Identities=15% Similarity=0.165 Sum_probs=59.1
Q ss_pred ccccccCccccceeeeccCCC-eEEEEeecCCCC-CChhHHHhhcc-----cccccccccccCCCCcccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDIS-VWVMNVISIDSP-DTLPIIYERGL-----FGIYHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~-vwvmnv~p~~~~-~~l~~i~eRGl-----ig~~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
+.|||+|||.|.|+.+|.... -.|.-|=|.... .+...+ .+.+ |-+.+.=-+.+|. +.+||+|++.+++-.
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~-~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAV-RKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYH 201 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHH-HHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhc
Confidence 689999999999998887653 234333332111 111111 1110 1111111134454 789999998887653
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
+-....+|-++-|+|||||.+|+.
T Consensus 202 ---~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 202 ---RRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred ---cCCHHHHHHHHHHhcCCCcEEEEE
Confidence 335677899999999999999985
No 204
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=97.43 E-value=6.3e-05 Score=77.02 Aligned_cols=93 Identities=13% Similarity=0.210 Sum_probs=60.7
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhH----HHhhcc---cccccccccccCCCCccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPI----IYERGL---FGIYHDWCESFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~----i~eRGl---ig~~~~~ce~f~typrtyDl~Ha~~~~s 716 (796)
-.|||+|||.|.++..|.++.. +|+-+|.. ..+.. +-.+|+ -.+..|+.. ++ ++.+||+|-+..+|-
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~I~~~~~~~ 106 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN-LT-FDGEYDFILSTVVLM 106 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh-CC-cCCCcCEEEEecchh
Confidence 4699999999999999987632 33333443 22322 334454 223344432 22 367899999877763
Q ss_pred cccCCcchHHHHHhhcccccCCcEEEE
Q 003776 717 KIKKRCNLVAVVAEVDRILRPEGKLIV 743 (796)
Q Consensus 717 ~~~~rC~~~~~l~E~DRiLRP~G~~i~ 743 (796)
. ...-.+..+|-+|-|+|+|||++++
T Consensus 107 ~-~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 107 F-LEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred h-CCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 2 3344567889999999999999654
No 205
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=97.43 E-value=5.6e-05 Score=80.94 Aligned_cols=98 Identities=17% Similarity=0.222 Sum_probs=59.2
Q ss_pred cccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhhc----ccc-cccccccccCCCCccccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYERG----LFG-IYHDWCESFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eRG----lig-~~~~~ce~f~typrtyDl~Ha~~~~s 716 (796)
-..|||+|||+|+++..|... .. .|+-+|.. ..+..+-+|- .|- +..|.. ..+.-+.+||+|++..+|-
T Consensus 53 ~~~VLDiGcG~G~~a~~la~~~~~---~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~-~~~~~~~~FD~V~s~~~l~ 128 (263)
T PTZ00098 53 NSKVLDIGSGLGGGCKYINEKYGA---HVHGVDICEKMVNIAKLRNSDKNKIEFEANDIL-KKDFPENTFDMIYSRDAIL 128 (263)
T ss_pred CCEEEEEcCCCChhhHHHHhhcCC---EEEEEECCHHHHHHHHHHcCcCCceEEEECCcc-cCCCCCCCeEEEEEhhhHH
Confidence 346999999999998887543 22 23333322 4444444432 111 122222 2222147999999865543
Q ss_pred cccCCcchHHHHHhhcccccCCcEEEEecc
Q 003776 717 KIKKRCNLVAVVAEVDRILRPEGKLIVRDD 746 (796)
Q Consensus 717 ~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~ 746 (796)
.+ .......+|-++-|+|+|||+|++.|-
T Consensus 129 h~-~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 129 HL-SYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred hC-CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 32 122456789999999999999999753
No 206
>PRK04148 hypothetical protein; Provisional
Probab=97.43 E-value=0.0011 Score=64.37 Aligned_cols=104 Identities=15% Similarity=0.128 Sum_probs=67.5
Q ss_pred HHHHHhCcccccCCCCCEEEEECCCCch-hHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCC-
Q 003776 375 DFIQESVPDVAWGKRTRVVLDVGCGVAS-FGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFP- 450 (796)
Q Consensus 375 d~L~e~Lp~i~~~~~~~~VLDIGCGtG~-~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfp- 450 (796)
+.|.+.++. ..+.+|||||||.|. ++..|.+. .|+++|+++..+ +.+++.++ ...+.|...-.+.
T Consensus 6 ~~l~~~~~~----~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV-----~~a~~~~~--~~v~dDlf~p~~~~ 74 (134)
T PRK04148 6 EFIAENYEK----GKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAV-----EKAKKLGL--NAFVDDLFNPNLEI 74 (134)
T ss_pred HHHHHhccc----ccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHH-----HHHHHhCC--eEEECcCCCCCHHH
Confidence 445565554 346799999999996 88888875 899999998643 44455554 3455554333322
Q ss_pred CCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 003776 451 GIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQ 496 (796)
Q Consensus 451 d~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~ 496 (796)
-..+|+|++.+. ..+....+.++.+-+ |.-++|. ++..+
T Consensus 75 y~~a~liysirp----p~el~~~~~~la~~~--~~~~~i~-~l~~e 113 (134)
T PRK04148 75 YKNAKLIYSIRP----PRDLQPFILELAKKI--NVPLIIK-PLSGE 113 (134)
T ss_pred HhcCCEEEEeCC----CHHHHHHHHHHHHHc--CCCEEEE-cCCCC
Confidence 356999999873 335566666666654 4445655 54444
No 207
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.40 E-value=0.001 Score=72.53 Aligned_cols=97 Identities=16% Similarity=0.182 Sum_probs=61.9
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeE--EEEcCCCCCCCCCCceeEEEEcC-C
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAI--SAVMGTERLPFPGIVFDAVHCAR-C 462 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~--~~v~d~e~LPfpd~SFDlVvss~-~ 462 (796)
.++.|||+|||+|.++.+.+.+ +|.+++.+. |...|+. +.....+.-. .+-+..+++.+| +..|+|++-. .
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~-Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARK-LVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHH-HHhcCCccceEEEccCccccccCc-hhccEEEeccch
Confidence 4789999999999877766653 899999876 5555542 2222333322 222345776666 6799999954 1
Q ss_pred CcccccchHHHHHHHHhhcCCCcEEE
Q 003776 463 RVPWHIEGGKLLLELNRVLRPGGFFI 488 (796)
Q Consensus 463 ~l~w~~d~~~~L~Ei~RVLKPGG~fv 488 (796)
.+.............+|.|||.|.++
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 12222222334445679999999987
No 208
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.39 E-value=0.0011 Score=67.63 Aligned_cols=92 Identities=27% Similarity=0.217 Sum_probs=64.8
Q ss_pred EEEEECCCCchhHHHHh----hCCeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCCCCCCceeEEEEcCCCccc
Q 003776 392 VVLDVGCGVASFGGFLF----DRGVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (796)
Q Consensus 392 ~VLDIGCGtG~~a~~La----~~~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LPfpd~SFDlVvss~~~l~w 466 (796)
++||||+|.|.-+..|+ ..+++-+|....-..--+ ..+.+.++. +......++. +.....||+|++-. +
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~-~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRA--v-- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLK-EVVRELGLSNVEVINGRAEE-PEYRESFDVVTARA--V-- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHH-HHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEES--S--
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHH-HHHHHhCCCCEEEEEeeecc-cccCCCccEEEeeh--h--
Confidence 89999999997666664 347999999876543332 445566777 4444444555 55568899999953 2
Q ss_pred ccchHHHHHHHHhhcCCCcEEEEE
Q 003776 467 HIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 467 ~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.....++.-+.+.|+|||.+++-
T Consensus 125 -~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 125 -APLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp -SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred -cCHHHHHHHHHHhcCCCCEEEEE
Confidence 25678888899999999999875
No 209
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.37 E-value=0.00083 Score=71.49 Aligned_cols=118 Identities=15% Similarity=0.146 Sum_probs=77.0
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHc----CCCeEEEEc
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALER----GIPAISAVM 442 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~er----gl~~~~~v~ 442 (796)
..|.+.|.. ++.... +.+.+||-||-|.|..+..|++. .|+++|+++..+..++.-+.... ...+..+..
T Consensus 60 ~~y~e~l~h-~~~~~~-~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~ 137 (246)
T PF01564_consen 60 FIYHEMLVH-PPLLLH-PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIG 137 (246)
T ss_dssp HHHHHHHHH-HHHHHS-SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEES
T ss_pred HHHHHHHhh-hHhhcC-CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEh
Confidence 455555443 332222 35889999999999999999875 69999999988877765444332 234566666
Q ss_pred CCCC-CCCCCC-ceeEEEEcCCCccccc----chHHHHHHHHhhcCCCcEEEEEe
Q 003776 443 GTER-LPFPGI-VFDAVHCARCRVPWHI----EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 443 d~e~-LPfpd~-SFDlVvss~~~l~w~~----d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
|... |--... .||+|+.-.. -+... -...+++.+.++|+|||.|++..
T Consensus 138 Dg~~~l~~~~~~~yDvIi~D~~-dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 138 DGRKFLKETQEEKYDVIIVDLT-DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp THHHHHHTSSST-EEEEEEESS-STTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhHHHHHhccCCcccEEEEeCC-CCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 6421 211223 8999998542 12222 12689999999999999999764
No 210
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.36 E-value=0.00013 Score=73.67 Aligned_cols=112 Identities=16% Similarity=0.134 Sum_probs=68.6
Q ss_pred cccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHH----hhccccccccccc-ccCCCCccccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIY----ERGLFGIYHDWCE-SFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~----eRGlig~~~~~ce-~f~typrtyDl~Ha~~~~s 716 (796)
-++|||+|||.|.++.++..+ |- ..|+-+|.. ..+..+- ..|+-. +.-.+. ....++..||+|.+.+.+
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~~~~~~~~D~v~~~~~~- 107 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPS--LQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAPIELPGKADAIFIGGSG- 107 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCchhhcCcCCCEEEECCCc-
Confidence 457999999999998877543 21 122223332 2233222 123211 110111 112345789999866532
Q ss_pred cccCCcchHHHHHhhcccccCCcEEEEec-cHHHHHHHHHHHhcCCceE
Q 003776 717 KIKKRCNLVAVVAEVDRILRPEGKLIVRD-DVETINELESMVKGMQWEV 764 (796)
Q Consensus 717 ~~~~rC~~~~~l~E~DRiLRP~G~~i~rd-~~~~~~~~~~~~~~l~W~~ 764 (796)
..+..++-++-|+|+|||++++.. ......++.++++...|..
T Consensus 108 -----~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~ 151 (187)
T PRK08287 108 -----GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSE 151 (187)
T ss_pred -----cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCc
Confidence 346778889999999999999975 4556777888888888753
No 211
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=97.35 E-value=8.6e-05 Score=78.70 Aligned_cols=95 Identities=15% Similarity=0.169 Sum_probs=64.0
Q ss_pred ccccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhhcccccccccccccCCCCccccccccccccccccC
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKK 720 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~~ce~f~typrtyDl~Ha~~~~s~~~~ 720 (796)
.-..|||+|||.|.++.+|..+ |- ..|+=+|.. ..+..+-++++-=+..|- +.++ ...+||+|++..+|-...
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~--~~v~gvD~s~~~~~~a~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~~- 103 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPG--AVIEALDSSPEMVAAARERGVDARTGDV-RDWK-PKPDTDVVVSNAALQWVP- 103 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHhcCCcEEEcCh-hhCC-CCCCceEEEEehhhhhCC-
Confidence 3467999999999999888764 21 123333333 566666677642222333 2232 246899999988876443
Q ss_pred CcchHHHHHhhcccccCCcEEEEe
Q 003776 721 RCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 721 rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
....+|-++-|+|+|||++++.
T Consensus 104 --d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 104 --EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred --CHHHHHHHHHHhCCCCcEEEEE
Confidence 3467899999999999999985
No 212
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.35 E-value=0.00036 Score=70.01 Aligned_cols=117 Identities=11% Similarity=0.182 Sum_probs=71.3
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHh----hcc-cc-cccccccccCCCCcccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYE----RGL-FG-IYHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGl-ig-~~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
+.|||+|||.|.++.+|..... .|+-+|-. ..+..+-+ .|+ +- +..|+.+. .+.+||+|-++--|..
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~---~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG---VRGKFDVILFNPPYLP 94 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc---cCCcccEEEECCCCCC
Confidence 4599999999999988876532 23333332 22322211 122 11 22344332 2468999987655432
Q ss_pred cc------------------CCcchHHHHHhhcccccCCcEEEEeccHHH-HHHHHHHHhcCCceEEEe
Q 003776 718 IK------------------KRCNLVAVVAEVDRILRPEGKLIVRDDVET-INELESMVKGMQWEVRMT 767 (796)
Q Consensus 718 ~~------------------~rC~~~~~l~E~DRiLRP~G~~i~rd~~~~-~~~~~~~~~~l~W~~~~~ 767 (796)
.. .++.+..+|-++.|+|+|||.+++-..... ...+..+++..-|.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEE
Confidence 21 123467889999999999999998654433 555666666666766554
No 213
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.35 E-value=0.0025 Score=70.40 Aligned_cols=102 Identities=11% Similarity=0.121 Sum_probs=67.9
Q ss_pred CCEEEEECCCCchhHHHHhhC--------CeEEEeCChhhHHHHHHHHHHHcC--CCeEEEEcCC----CCCCC--CCCc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR--------GVLTMSFAPKDEHEAQVQFALERG--IPAISAVMGT----ERLPF--PGIV 453 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~--------~V~gvDiSp~dl~~A~~q~A~erg--l~~~~~v~d~----e~LPf--pd~S 453 (796)
+..|+|+|||.|.=+..|++. .++++|+|...+..+..+...... +.+.-+.++. ..||- ....
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~ 156 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSR 156 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCC
Confidence 568999999999866655442 589999999999888766652222 2222244443 22322 2234
Q ss_pred eeEEEEcCCCccccc--chHHHHHHHHh-hcCCCcEEEEEe
Q 003776 454 FDAVHCARCRVPWHI--EGGKLLLELNR-VLRPGGFFIWSA 491 (796)
Q Consensus 454 FDlVvss~~~l~w~~--d~~~~L~Ei~R-VLKPGG~fv~s~ 491 (796)
..+|+...+.+.... ....+|+++++ +|+|||.|++..
T Consensus 157 ~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 157 PTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred ccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 677777554454433 33588899999 999999999874
No 214
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.33 E-value=0.0011 Score=68.46 Aligned_cols=112 Identities=16% Similarity=0.086 Sum_probs=69.4
Q ss_pred ccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh--C--CeEEEeCChhhHHHHHHHHHHHcCCC--e
Q 003776 364 TQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD--R--GVLTMSFAPKDEHEAQVQFALERGIP--A 437 (796)
Q Consensus 364 t~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~--~--~V~gvDiSp~dl~~A~~q~A~ergl~--~ 437 (796)
..|..+-..-...|.+.+. ++.+|||+-||.|.|+..+++ + .|+++|+.|..+...+ +.++..++. +
T Consensus 82 vyfs~rl~~Er~Ri~~~v~------~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~-~Ni~lNkv~~~i 154 (200)
T PF02475_consen 82 VYFSPRLSTERRRIANLVK------PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLK-ENIRLNKVENRI 154 (200)
T ss_dssp S---GGGHHHHHHHHTC--------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHH-HHHHHTT-TTTE
T ss_pred EEEccccHHHHHHHHhcCC------cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHH-HHHHHcCCCCeE
Confidence 3455544444455555433 478999999999999999987 3 6999999997665554 555555555 3
Q ss_pred EEEEcCCCCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEE
Q 003776 438 ISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFI 488 (796)
Q Consensus 438 ~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv 488 (796)
.....|...++. ...||-|++++ .. .-..+|..+.+++|+||.+-
T Consensus 155 ~~~~~D~~~~~~-~~~~drvim~l--p~---~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 155 EVINGDAREFLP-EGKFDRVIMNL--PE---SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEES-GGG----TT-EEEEEE----TS---SGGGGHHHHHHHEEEEEEEE
T ss_pred EEEcCCHHHhcC-ccccCEEEECC--hH---HHHHHHHHHHHHhcCCcEEE
Confidence 456677666554 68999999975 21 23468888999999999875
No 215
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.33 E-value=4.7e-05 Score=82.15 Aligned_cols=97 Identities=23% Similarity=0.410 Sum_probs=63.4
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCCCChhH----HHhhcccccccccccccCCCCcccccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSPDTLPI----IYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIK 719 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~~~l~~----i~eRGlig~~~~~ce~f~typrtyDl~Ha~~~~s~~~ 719 (796)
-.|||+|||.|||+-++..+ .+-|.-|.. ++.|+.. |-++||-+...--+.-|..++-+||-|=+-++|-...
T Consensus 64 ~~vLDiGcGwG~~~~~~a~~~g~~v~gitl--S~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~IvSi~~~Ehvg 141 (273)
T PF02353_consen 64 DRVLDIGCGWGGLAIYAAERYGCHVTGITL--SEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRIVSIEMFEHVG 141 (273)
T ss_dssp -EEEEES-TTSHHHHHHHHHH--EEEEEES---HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEEEEESEGGGTC
T ss_pred CEEEEeCCCccHHHHHHHHHcCcEEEEEEC--CHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEEEEEechhhcC
Confidence 37999999999999999877 765555543 3355553 5678875544433444445555899888777776653
Q ss_pred CCcchHHHHHhhcccccCCcEEEEe
Q 003776 720 KRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 720 ~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
+=.+..++-.+.|+|+|||.++|.
T Consensus 142 -~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 142 -RKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp -GGGHHHHHHHHHHHSETTEEEEEE
T ss_pred -hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 345667899999999999999974
No 216
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.32 E-value=0.00028 Score=74.91 Aligned_cols=127 Identities=19% Similarity=0.244 Sum_probs=71.5
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhc-ccccccccccccCCCCccccccccccccccccCC
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERG-LFGIYHDWCESFSTYPRTYDLLHADHLFSKIKKR 721 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRG-lig~~~~~ce~f~typrtyDl~Ha~~~~s~~~~r 721 (796)
-..|||+|||.|..+.++.....- .|+-+|-. ..+..+-++- +-|+- +.. .++.-...||+|.|+.+..
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~-~~~-~~~~~~~~fD~Vvani~~~----- 190 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVE-LNV-YLPQGDLKADVIVANILAN----- 190 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCC-ceE-EEccCCCCcCEEEEcCcHH-----
Confidence 357999999999888777654321 12223332 3333333321 11110 000 0111112699998654322
Q ss_pred cchHHHHHhhcccccCCcEEEEeccH-HHHHHHHHHHhcCCceEEEeeccCCceEEEEEe
Q 003776 722 CNLVAVVAEVDRILRPEGKLIVRDDV-ETINELESMVKGMQWEVRMTYSKDKEGLLCVEK 780 (796)
Q Consensus 722 C~~~~~l~E~DRiLRP~G~~i~rd~~-~~~~~~~~~~~~l~W~~~~~~~~~~e~~l~~~K 780 (796)
.+..++-++-|+|||||++|++... .....+...++...+.+......+.=..++++|
T Consensus 191 -~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~~~W~~~~~~~ 249 (250)
T PRK00517 191 -PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLERGEWVALVGKK 249 (250)
T ss_pred -HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEeCCEEEEEEEe
Confidence 2446677999999999999998543 345667777777778776543333223444444
No 217
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.31 E-value=0.00088 Score=72.18 Aligned_cols=128 Identities=19% Similarity=0.296 Sum_probs=78.6
Q ss_pred CCccccccHHHHHHHHHHhCcccccCC--CCCEEEEECCCCc----hhHHHHhhC---------CeEEEeCChhhHHHHH
Q 003776 362 GGTQFKNGALHYIDFIQESVPDVAWGK--RTRVVLDVGCGVA----SFGGFLFDR---------GVLTMSFAPKDEHEAQ 426 (796)
Q Consensus 362 ggt~F~~~a~~yid~L~e~Lp~i~~~~--~~~~VLDIGCGtG----~~a~~La~~---------~V~gvDiSp~dl~~A~ 426 (796)
..|.|.....++..+-...+|.+.... ..-+|+-+||+|| ++|..|.+. .|+|+|++...|..|+
T Consensus 67 n~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~ 146 (268)
T COG1352 67 NVTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKAR 146 (268)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHh
Confidence 345566666666544444455332211 3679999999999 344444331 7899999999888876
Q ss_pred HHH----HHHcCCC-------------------------eEEEEcCCCCCCCCCCceeEEEEcCCCccccc--chHHHHH
Q 003776 427 VQF----ALERGIP-------------------------AISAVMGTERLPFPGIVFDAVHCARCRVPWHI--EGGKLLL 475 (796)
Q Consensus 427 ~q~----A~ergl~-------------------------~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~--d~~~~L~ 475 (796)
.-. ...++++ +.+...+...-++..+.||+|+|-.. +.+.. ....++.
T Consensus 147 ~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNV-LIYFd~~~q~~il~ 225 (268)
T COG1352 147 AGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNV-LIYFDEETQERILR 225 (268)
T ss_pred cCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcce-EEeeCHHHHHHHHH
Confidence 321 1112221 11222222111214467999999653 44433 3368999
Q ss_pred HHHhhcCCCcEEEEE
Q 003776 476 ELNRVLRPGGFFIWS 490 (796)
Q Consensus 476 Ei~RVLKPGG~fv~s 490 (796)
.++..|+|||+|++.
T Consensus 226 ~f~~~L~~gG~LflG 240 (268)
T COG1352 226 RFADSLKPGGLLFLG 240 (268)
T ss_pred HHHHHhCCCCEEEEc
Confidence 999999999999986
No 218
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=97.30 E-value=8.9e-05 Score=76.91 Aligned_cols=95 Identities=14% Similarity=0.279 Sum_probs=57.1
Q ss_pred ccccccCccccceeeeccCC--C-eEEEEeecCCCCCChhHHH----hhcc--cccc-cccccccCCCCccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI--S-VWVMNVISIDSPDTLPIIY----ERGL--FGIY-HDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~--~-vwvmnv~p~~~~~~l~~i~----eRGl--ig~~-~~~ce~f~typrtyDl~Ha~~~ 714 (796)
..|||+|||.|.++..|.+. + .-|..|-+.. ..+..+- ..++ +-++ .|. +.++.-+.+||+|++...
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~V~~~~~ 123 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSE--NMLSVGRQKVKDAGLHNVELVHGNA-MELPFDDNSFDYVTIGFG 123 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHhcCCCceEEEEech-hcCCCCCCCccEEEEecc
Confidence 46999999999999888643 1 2233332221 2332222 2232 1122 222 223322379999998766
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
|.... ....+|-|+-|+|+|||++++.+
T Consensus 124 l~~~~---~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 124 LRNVP---DYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred cccCC---CHHHHHHHHHHHcCcCeEEEEEE
Confidence 54333 24567889999999999999864
No 219
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.28 E-value=0.00023 Score=77.29 Aligned_cols=113 Identities=15% Similarity=0.145 Sum_probs=66.9
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----ccccccccccccc-CCCCccccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GLFGIYHDWCESF-STYPRTYDLLHADHLFSKI 718 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~~ce~f-~typrtyDl~Ha~~~~s~~ 718 (796)
.+|||+|||.|.++.++.....- .|+-+|-. ..+..+.++ |+-..+...+... +..+..||+|+++.+..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~~--~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~-- 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGAA--KVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE-- 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH--
Confidence 57999999999987776554321 23333333 334333332 2211122222212 22246899999865432
Q ss_pred cCCcchHHHHHhhcccccCCcEEEEeccH-HHHHHHHHHHhcCCceEEE
Q 003776 719 KKRCNLVAVVAEVDRILRPEGKLIVRDDV-ETINELESMVKGMQWEVRM 766 (796)
Q Consensus 719 ~~rC~~~~~l~E~DRiLRP~G~~i~rd~~-~~~~~~~~~~~~l~W~~~~ 766 (796)
.+..++-++-|+|+|||++|++.-. +-...+...+++. |++..
T Consensus 237 ----~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~ 280 (288)
T TIGR00406 237 ----VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVE 280 (288)
T ss_pred ----HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Cceee
Confidence 2456788999999999999997533 2445566655555 76643
No 220
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.27 E-value=0.00015 Score=74.61 Aligned_cols=121 Identities=17% Similarity=0.135 Sum_probs=72.1
Q ss_pred ccccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHH----hhcc--cc-cccccccccCC-C-Ccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIY----ERGL--FG-IYHDWCESFST-Y-PRTYDLLHA 711 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~----eRGl--ig-~~~~~ce~f~t-y-prtyDl~Ha 711 (796)
.-++|||+|||.|.++..|... |- .+|+-+|-. ..+..+- ..|+ +- +..|+.+.++. + +.+||+|..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~--~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPD--INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCC--ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence 3478999999999998887553 21 122222322 2232222 1233 11 22333233441 3 578999975
Q ss_pred ccccccc------cCCcchHHHHHhhcccccCCcEEEEe-ccHHHHHHHHHHHhcCCceEEE
Q 003776 712 DHLFSKI------KKRCNLVAVVAEVDRILRPEGKLIVR-DDVETINELESMVKGMQWEVRM 766 (796)
Q Consensus 712 ~~~~s~~------~~rC~~~~~l~E~DRiLRP~G~~i~r-d~~~~~~~~~~~~~~l~W~~~~ 766 (796)
.... .| ..+.....+|-++-|+|+|||+|+|. +....+..+...+..--|.+..
T Consensus 118 ~~~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~ 178 (202)
T PRK00121 118 NFPD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVS 178 (202)
T ss_pred ECCC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccccc
Confidence 4322 12 12233577899999999999999996 6666776777766666676663
No 221
>PRK08317 hypothetical protein; Provisional
Probab=97.25 E-value=0.00013 Score=74.92 Aligned_cols=98 Identities=24% Similarity=0.323 Sum_probs=61.4
Q ss_pred ccccccccCccccceeeeccCCC-eEEEEeecCCCC-CChhHHHhh--cccccc----cccccccCCCCccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDIS-VWVMNVISIDSP-DTLPIIYER--GLFGIY----HDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~-vwvmnv~p~~~~-~~l~~i~eR--Glig~~----~~~ce~f~typrtyDl~Ha~~~ 714 (796)
.-..|||+|||.|.++..|...- -- -+|+-++.. ..+..+-.+ +..... .|.. .++.-+.+||+||+..+
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~-~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~v~~~~~ 96 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPE-GRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDAD-GLPFPDGSFDAVRSDRV 96 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCC-cEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccc-cCCCCCCCceEEEEech
Confidence 34579999999999988876531 00 022223332 455555555 111111 1221 12222468999999888
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
|..+.+ ...+|-++-|+|+|||++++.+
T Consensus 97 ~~~~~~---~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 97 LQHLED---PARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred hhccCC---HHHHHHHHHHHhcCCcEEEEEe
Confidence 876653 5667999999999999998753
No 222
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0012 Score=68.26 Aligned_cols=96 Identities=19% Similarity=0.198 Sum_probs=64.9
Q ss_pred CCCCEEEEECCCCchhHHHHhh---C---CeEEEeCChhhHHHHHHHHHHHc----------CCCeEEEEcCCCCCCCCC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFD---R---GVLTMSFAPKDEHEAQVQFALER----------GIPAISAVMGTERLPFPG 451 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~---~---~V~gvDiSp~dl~~A~~q~A~er----------gl~~~~~v~d~e~LPfpd 451 (796)
.++.+.||+|.|+|+++..++. . .++||+.-+..+..+....-..- .....+.+.|....--+.
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~ 160 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQ 160 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCcc
Confidence 3588999999999998877663 1 34888887766555543222111 112345566655555556
Q ss_pred CceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 452 IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 452 ~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
..||.||+-. ....+..++...|+|||.+++-
T Consensus 161 a~YDaIhvGA-------aa~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 161 APYDAIHVGA-------AASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CCcceEEEcc-------CccccHHHHHHhhccCCeEEEe
Confidence 7899999974 2346667888899999999973
No 223
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.22 E-value=0.00013 Score=78.97 Aligned_cols=93 Identities=16% Similarity=0.226 Sum_probs=60.9
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChh----HHHhhcc--cccccccccccCCCCcccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLP----IIYERGL--FGIYHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~----~i~eRGl--ig~~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
..|||+|||.|.++.+|..+.. .|+-+|.. .-+. .+-++|+ --+..|... ++ .+..||+|-+..+|..
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~-~~-~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINS-AS-IQEEYDFILSTVVLMF 196 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhc-cc-ccCCccEEEEcchhhh
Confidence 4799999999999999877653 33444443 2233 2334565 111222222 12 2688999998887754
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEE
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIV 743 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~ 743 (796)
. ++-.+..+|-+|-|+|+|||++++
T Consensus 197 l-~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 197 L-NRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred C-CHHHHHHHHHHHHHhcCCCcEEEE
Confidence 3 344677899999999999999655
No 224
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.21 E-value=0.0023 Score=64.13 Aligned_cols=97 Identities=16% Similarity=0.149 Sum_probs=68.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC-----CCCCceeEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP-----FPGIVFDAV 457 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP-----fpd~SFDlV 457 (796)
..+.-||++|.|||.++.+++.+ .+++++.++...+.-. ++.....++.+|+..|. +...-||.|
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~-----~~~p~~~ii~gda~~l~~~l~e~~gq~~D~v 121 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLN-----QLYPGVNIINGDAFDLRTTLGEHKGQFFDSV 121 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHH-----HhCCCccccccchhhHHHHHhhcCCCeeeeE
Confidence 45679999999999999999986 7899999886543332 22233344555554442 567789999
Q ss_pred EEcCCCccccc-chHHHHHHHHhhcCCCcEEEE
Q 003776 458 HCARCRVPWHI-EGGKLLLELNRVLRPGGFFIW 489 (796)
Q Consensus 458 vss~~~l~w~~-d~~~~L~Ei~RVLKPGG~fv~ 489 (796)
+|...++.... -.-..|..+...|++||.|+-
T Consensus 122 iS~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 122 ISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred EeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 99764333322 235778889999999999883
No 225
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.19 E-value=0.0026 Score=73.79 Aligned_cols=106 Identities=16% Similarity=0.245 Sum_probs=72.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCe-EEEEcCCCCCC-CCCCceeEEE--
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPA-ISAVMGTERLP-FPGIVFDAVH-- 458 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~-~~~v~d~e~LP-fpd~SFDlVv-- 458 (796)
.++.+|||++||.|.=+.+|+.. .|++.|+++.-+...+ ..+.+.|+.. .....|...++ .....||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~-~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLH-ANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 46789999999999877777653 6999999997776655 4555567764 34445555442 2236799999
Q ss_pred --EcCC-Ccc--------ccc-c-------hHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 459 --CARC-RVP--------WHI-E-------GGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 459 --ss~~-~l~--------w~~-d-------~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
|+.. .+. |.. + ...+|..+.+.|||||+++.++...
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 4421 111 111 0 1367888999999999999886543
No 226
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.19 E-value=0.00026 Score=63.66 Aligned_cols=89 Identities=24% Similarity=0.346 Sum_probs=44.4
Q ss_pred cccCccccceeeeccCC--CeEEEEeecCCCCCCh----hHHHhhcc--cccc-cccccccCCCC-cccccccccccccc
Q 003776 648 MDMRSVYGGFAAAMKDI--SVWVMNVISIDSPDTL----PIIYERGL--FGIY-HDWCESFSTYP-RTYDLLHADHLFSK 717 (796)
Q Consensus 648 mDm~~g~g~faA~l~~~--~vwvmnv~p~~~~~~l----~~i~eRGl--ig~~-~~~ce~f~typ-rtyDl~Ha~~~~s~ 717 (796)
||+|||.|.+..+|+.. ..=+.-+=+.. .-+ +-+.+.+. +-.. ..--..+...+ .+||+|.+.++|..
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~--~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISP--SMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSS--STTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhh
Confidence 79999999999999876 32222222221 222 12222221 1111 11112223333 59999999999988
Q ss_pred ccCCcchHHHHHhhcccccCCcEE
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKL 741 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~ 741 (796)
+ =.+..+|-.+-|+|+|||.+
T Consensus 79 l---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 L---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ----S-HHHHHHHHTTT-TSS-EE
T ss_pred h---hhHHHHHHHHHHHcCCCCCC
Confidence 7 35668899999999999986
No 227
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.18 E-value=0.00014 Score=74.71 Aligned_cols=95 Identities=20% Similarity=0.250 Sum_probs=59.8
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhc---ccccccccccccCCCCccccccccccccccccC
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERG---LFGIYHDWCESFSTYPRTYDLLHADHLFSKIKK 720 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRG---lig~~~~~ce~f~typrtyDl~Ha~~~~s~~~~ 720 (796)
+.|||+|||.|.|...|...-- -..|+-+|.. ..+..+..+. +.-+..|. +.++..+.+||+|.+.++|....
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~vi~~~~l~~~~- 112 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDA-EKLPLEDSSFDLIVSNLALQWCD- 112 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecch-hhCCCCCCceeEEEEhhhhhhcc-
Confidence 5699999999999988865420 0012222222 2333333332 22222333 23444468999999888775332
Q ss_pred CcchHHHHHhhcccccCCcEEEEe
Q 003776 721 RCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 721 rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
....+|-++.|+|+|||++++.
T Consensus 113 --~~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 113 --DLSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred --CHHHHHHHHHHHcCCCcEEEEE
Confidence 4667899999999999999986
No 228
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.17 E-value=0.0011 Score=74.22 Aligned_cols=95 Identities=18% Similarity=0.146 Sum_probs=64.4
Q ss_pred CEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCC-CC-CC--------------C
Q 003776 391 RVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTER-LP-FP--------------G 451 (796)
Q Consensus 391 ~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~-LP-fp--------------d 451 (796)
.+|||++||+|.++..|++. .|+++|+++.++..++ +.+...++. +.+...++.. ++ +. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~-~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQ-YNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHH-HHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 57999999999999988874 8999999999998877 555556664 5566666533 21 10 1
Q ss_pred CceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 452 IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 452 ~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
..||+|+.....-- -...++..+. +|++.++++-.
T Consensus 287 ~~~D~v~lDPPR~G---~~~~~l~~l~---~~~~ivyvSC~ 321 (362)
T PRK05031 287 YNFSTIFVDPPRAG---LDDETLKLVQ---AYERILYISCN 321 (362)
T ss_pred CCCCEEEECCCCCC---CcHHHHHHHH---ccCCEEEEEeC
Confidence 25899998653211 1234444443 47888888843
No 229
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.16 E-value=0.00019 Score=79.06 Aligned_cols=97 Identities=9% Similarity=0.012 Sum_probs=59.5
Q ss_pred cccccccCccccceeeeccCCCe-EEEEeecCCCC-CChhHHHh----hcccccccccccccCCCCcccccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISV-WVMNVISIDSP-DTLPIIYE----RGLFGIYHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~v-wvmnv~p~~~~-~~l~~i~e----RGlig~~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
=+.|||+|||.|.++.+|..... -|.-|=|.... .+...+-. .+.+.+..-=-+.++. +.+||+|-+.+++-.
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL~H 200 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGVLYH 200 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcchhhc
Confidence 36899999999999888766532 34444443321 12111111 1111111100123333 348999998888754
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
+ -....+|-++-|+|||||.+||.
T Consensus 201 ~---~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 201 R---KSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred c---CCHHHHHHHHHHhcCCCCEEEEE
Confidence 3 35678899999999999999985
No 230
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.15 E-value=0.0019 Score=67.26 Aligned_cols=87 Identities=14% Similarity=0.169 Sum_probs=59.7
Q ss_pred CCEEEEECCCCchhHHHHhh-CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCC---CCCceeEEEEcCCCcc
Q 003776 390 TRVVLDVGCGVASFGGFLFD-RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF---PGIVFDAVHCARCRVP 465 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~-~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPf---pd~SFDlVvss~~~l~ 465 (796)
.-++|||||=.......-.. ..|+.||+.+.. . .+...|....|. +.+.||+|++++. +.
T Consensus 52 ~lrlLEVGals~~N~~s~~~~fdvt~IDLns~~-----------~----~I~qqDFm~rplp~~~~e~FdvIs~SLV-LN 115 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTSGWFDVTRIDLNSQH-----------P----GILQQDFMERPLPKNESEKFDVISLSLV-LN 115 (219)
T ss_pred cceEEeecccCCCCcccccCceeeEEeecCCCC-----------C----CceeeccccCCCCCCcccceeEEEEEEE-Ee
Confidence 36999999875543322222 269999997621 1 234566555555 3679999999872 44
Q ss_pred cccch---HHHHHHHHhhcCCCcE-----EEEEeC
Q 003776 466 WHIEG---GKLLLELNRVLRPGGF-----FIWSAT 492 (796)
Q Consensus 466 w~~d~---~~~L~Ei~RVLKPGG~-----fv~s~~ 492 (796)
+.+++ ...++.+++.|+|+|. |++..|
T Consensus 116 fVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP 150 (219)
T PF11968_consen 116 FVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLP 150 (219)
T ss_pred eCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeC
Confidence 55544 7899999999999999 776644
No 231
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.14 E-value=0.0022 Score=64.38 Aligned_cols=110 Identities=23% Similarity=0.256 Sum_probs=60.7
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcC-----
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMG----- 443 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d----- 443 (796)
+..+.+....+. ...+.+||||||++|.|+..+..+ .|+|+|+.+.... .+ +.....|
T Consensus 9 L~ei~~~~~~~~-~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~---------~~--~~~i~~d~~~~~ 76 (181)
T PF01728_consen 9 LYEIDEKFKIFK-PGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL---------QN--VSFIQGDITNPE 76 (181)
T ss_dssp HHHHHHTTSSS--TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS----------TT--EEBTTGGGEEEE
T ss_pred HHHHHHHCCCCC-cccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc---------cc--eeeeecccchhh
Confidence 444555555332 124689999999999999999876 6999999874110 11 1111111
Q ss_pred ----C-CCCCCCCCceeEEEEcCCCcccc----cch-------HHHHHHHHhhcCCCcEEEEEeCCCCC
Q 003776 444 ----T-ERLPFPGIVFDAVHCARCRVPWH----IEG-------GKLLLELNRVLRPGGFFIWSATPVYQ 496 (796)
Q Consensus 444 ----~-e~LPfpd~SFDlVvss~~~l~w~----~d~-------~~~L~Ei~RVLKPGG~fv~s~~~~~~ 496 (796)
. ..++-....||+|+|-.+ .... .+. ...|.-+...|||||.|++-......
T Consensus 77 ~~~~i~~~~~~~~~~~dlv~~D~~-~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~ 144 (181)
T PF01728_consen 77 NIKDIRKLLPESGEKFDLVLSDMA-PNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPE 144 (181)
T ss_dssp HSHHGGGSHGTTTCSESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTT
T ss_pred HHHhhhhhccccccCcceeccccc-cCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCcc
Confidence 1 111212368999999641 1111 111 23344456789999999987544333
No 232
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.14 E-value=0.0032 Score=69.56 Aligned_cols=99 Identities=21% Similarity=0.223 Sum_probs=73.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCC-CCCCCCCCceeEEEEcCCCcc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT-ERLPFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~-e~LPfpd~SFDlVvss~~~l~ 465 (796)
....++|+|.|.|..+..+... +|-++++....+-.++..++ .| +..+.++. ..+|-. |+|++-.++-|
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~g--V~~v~gdmfq~~P~~----daI~mkWiLhd 248 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--PG--VEHVAGDMFQDTPKG----DAIWMKWILHD 248 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--CC--cceecccccccCCCc----CeEEEEeeccc
Confidence 3578999999999999988875 78899998877666654443 33 33444443 456633 59999887666
Q ss_pred ccc-chHHHHHHHHhhcCCCcEEEEEeCCCC
Q 003776 466 WHI-EGGKLLLELNRVLRPGGFFIWSATPVY 495 (796)
Q Consensus 466 w~~-d~~~~L~Ei~RVLKPGG~fv~s~~~~~ 495 (796)
|.. +...+|++++..|+|||.+++.....+
T Consensus 249 wtDedcvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 249 WTDEDCVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 664 668999999999999999998755333
No 233
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.14 E-value=0.00018 Score=81.31 Aligned_cols=94 Identities=19% Similarity=0.340 Sum_probs=62.0
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhhc--ccccccccccccCCCCccccccccccccccccC
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYERG--LFGIYHDWCESFSTYPRTYDLLHADHLFSKIKK 720 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eRG--lig~~~~~ce~f~typrtyDl~Ha~~~~s~~~~ 720 (796)
..|||+|||.|+++..|... ++- |+-++-. .++..+-+|. + ++ .-.+..+...+.+||+|.+..+|....
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~g~~---V~giDlS~~~l~~A~~~~~~l-~v-~~~~~D~~~l~~~fD~Ivs~~~~ehvg- 242 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHYGVS---VVGVTISAEQQKLAQERCAGL-PV-EIRLQDYRDLNGQFDRIVSVGMFEHVG- 242 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHCCCE---EEEEeCCHHHHHHHHHHhccC-eE-EEEECchhhcCCCCCEEEEeCchhhCC-
Confidence 46999999999999888753 432 3333332 5666665543 2 11 111222222357899999888776432
Q ss_pred CcchHHHHHhhcccccCCcEEEEe
Q 003776 721 RCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 721 rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
.-.+..+|-++.|+|+|||++++.
T Consensus 243 ~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 243 PKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred hHHHHHHHHHHHHHcCCCcEEEEE
Confidence 234567899999999999999985
No 234
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=97.10 E-value=0.0002 Score=79.13 Aligned_cols=94 Identities=12% Similarity=0.222 Sum_probs=64.9
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhc----c---cccccccccccCCCCcccccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERG----L---FGIYHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRG----l---ig~~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
.|||+|||.|.|+..|.... .+|+-+|.. ..+.++-.+. + |-.++.=.+.++..+.+||+|=+.++|..
T Consensus 134 ~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 134 KFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred EEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 69999999999998887643 244445554 4555554442 2 11222222445544579999998888766
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
.. ....+|-++-|+|||||.++|..
T Consensus 211 v~---d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 211 VA---NPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred cC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 55 35678999999999999999874
No 235
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.09 E-value=0.0015 Score=71.25 Aligned_cols=116 Identities=17% Similarity=0.189 Sum_probs=70.8
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh-----------CCeEEEeCChhhHHHHHHHHHHHcCCCe---
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD-----------RGVLTMSFAPKDEHEAQVQFALERGIPA--- 437 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~-----------~~V~gvDiSp~dl~~A~~q~A~ergl~~--- 437 (796)
...++|.+++.. ..+.+|||..||+|.|...+.. ..++|+|+++..+..++..... +++..
T Consensus 33 ~i~~l~~~~~~~----~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l-~~~~~~~~ 107 (311)
T PF02384_consen 33 EIVDLMVKLLNP----KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL-HGIDNSNI 107 (311)
T ss_dssp HHHHHHHHHHTT-----TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH-TTHHCBGC
T ss_pred HHHHHHHhhhhc----cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh-hccccccc
Confidence 445566666542 4567899999999998777654 2799999999887777655543 33222
Q ss_pred EEEEcCCCCCC-CC-CCceeEEEEcCCCccc--cc-----c------------h-HHHHHHHHhhcCCCcEEEEEeC
Q 003776 438 ISAVMGTERLP-FP-GIVFDAVHCARCRVPW--HI-----E------------G-GKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 438 ~~~v~d~e~LP-fp-d~SFDlVvss~~~l~w--~~-----d------------~-~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
.....+.-..+ +. ...||+|+++..+... .. + . ..++..+.+.|++||++++..+
T Consensus 108 ~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 108 NIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp EEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 24455543222 22 4789999998643322 10 0 0 2467889999999999887654
No 236
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.0052 Score=65.89 Aligned_cols=101 Identities=20% Similarity=0.206 Sum_probs=70.7
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCC
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPG 451 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd 451 (796)
++.|.+.+.. .++.+||+||+|.|.++..|+++ .|+++++++.++..-+...+ .......+.+|+...+|+.
T Consensus 19 ~~kIv~~a~~----~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 19 IDKIVEAANI----SPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHHHhcCC----CCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchh
Confidence 4555555543 34789999999999999999986 89999999977655443332 2234566778887777775
Q ss_pred C-ceeEEEEcCCCcccccchHHHHHHHHhhcCC
Q 003776 452 I-VFDAVHCARCRVPWHIEGGKLLLELNRVLRP 483 (796)
Q Consensus 452 ~-SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKP 483 (796)
. .++.|+++ +++....+-+++-+..-..+
T Consensus 93 l~~~~~vVaN---lPY~Isspii~kll~~~~~~ 122 (259)
T COG0030 93 LAQPYKVVAN---LPYNISSPILFKLLEEKFII 122 (259)
T ss_pred hcCCCEEEEc---CCCcccHHHHHHHHhccCcc
Confidence 3 68999997 56666666665555555444
No 237
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.07 E-value=0.0017 Score=72.60 Aligned_cols=93 Identities=17% Similarity=0.101 Sum_probs=62.6
Q ss_pred CEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCC-CC-------C---C-----C
Q 003776 391 RVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTER-LP-------F---P-----G 451 (796)
Q Consensus 391 ~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~-LP-------f---p-----d 451 (796)
.+|||+|||+|.++..|++. .|+++|+++.++..++ +.+...++. +.+...+... ++ + . .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~-~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQ-YNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 46999999999999998874 8999999999998887 555556664 4566666433 11 1 0 1
Q ss_pred CceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 452 IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 452 ~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
..||+|+.....-- -...++..+ ++|++.++++
T Consensus 278 ~~~d~v~lDPPR~G---~~~~~l~~l---~~~~~ivYvs 310 (353)
T TIGR02143 278 YNCSTIFVDPPRAG---LDPDTCKLV---QAYERILYIS 310 (353)
T ss_pred CCCCEEEECCCCCC---CcHHHHHHH---HcCCcEEEEE
Confidence 23799988652111 123444444 3489999987
No 238
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.02 E-value=0.0069 Score=68.63 Aligned_cols=113 Identities=17% Similarity=0.047 Sum_probs=80.1
Q ss_pred CCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC---eEEEEcCC-CCCC---CCCCceeEEEE
Q 003776 390 TRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP---AISAVMGT-ERLP---FPGIVFDAVHC 459 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~---~~~~v~d~-e~LP---fpd~SFDlVvs 459 (796)
+.+|||+=|=||.|+.+.+.. .|+.||+|...+.-|+.++. -.|+. +.+++.|+ .-|. -....||+|+.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~-LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAE-LNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHH-hcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 789999999999999888763 89999999999988884444 45543 45666764 2222 22348999998
Q ss_pred cCCCcccc------c--chHHHHHHHHhhcCCCcEEEEEeCCCCCCchHHHH
Q 003776 460 ARCRVPWH------I--EGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVE 503 (796)
Q Consensus 460 s~~~l~w~------~--d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~El~~ 503 (796)
-...+.-. . +...++..+.++|+|||.+++++....-.......
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~ 348 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLE 348 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHH
Confidence 54222211 1 34678889999999999999986655555444433
No 239
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=96.99 E-value=0.00033 Score=74.12 Aligned_cols=96 Identities=20% Similarity=0.266 Sum_probs=58.7
Q ss_pred cccccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhhc-ccccc-cccccccCCCCcccccccccccccc
Q 003776 642 STVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYERG-LFGIY-HDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 642 ~~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eRG-lig~~-~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
..-.+|||+|||.|.|+..|... |- -+|+-+|.. ..+..+-++- -+.++ .|-.. +. .+.+||+|+++.+|..
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~--~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~-~~-~~~~fD~v~~~~~l~~ 105 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPA--ARITGIDSSPAMLAEARSRLPDCQFVEADIAS-WQ-PPQALDLIFANASLQW 105 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhCCCCeEEECchhc-cC-CCCCccEEEEccChhh
Confidence 34578999999999999888653 11 122222322 2333332221 01111 12221 21 2468999999888764
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
.. ....+|-+|-|+|||||++++.
T Consensus 106 ~~---d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 106 LP---DHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred CC---CHHHHHHHHHHhcCCCcEEEEE
Confidence 43 3567899999999999999985
No 240
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=96.98 E-value=0.00075 Score=69.97 Aligned_cols=126 Identities=13% Similarity=0.203 Sum_probs=66.9
Q ss_pred ccccccCccccceeeeccCC-----CeEEEEeecCCCCCChhHHHhhccccccccccc---------ccCCCCccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-----SVWVMNVISIDSPDTLPIIYERGLFGIYHDWCE---------SFSTYPRTYDLLH 710 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-----~vwvmnv~p~~~~~~l~~i~eRGlig~~~~~ce---------~f~typrtyDl~H 710 (796)
..|||+|||+|+|...|.+. .|..+-+.|... + .|+.-+-.|+.. ++. +.+||+|-
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~---~-----~~v~~i~~D~~~~~~~~~i~~~~~--~~~~D~V~ 122 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDP---I-----VGVDFLQGDFRDELVLKALLERVG--DSKVQVVM 122 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccC---C-----CCcEEEecCCCChHHHHHHHHHhC--CCCCCEEe
Confidence 46999999999997766543 244443333111 1 122222333332 233 36789988
Q ss_pred cccccccccCC--------cchHHHHHhhcccccCCcEEEEec-----cHHHHHHHHHHHhcCCceEEEee-ccCCceEE
Q 003776 711 ADHLFSKIKKR--------CNLVAVVAEVDRILRPEGKLIVRD-----DVETINELESMVKGMQWEVRMTY-SKDKEGLL 776 (796)
Q Consensus 711 a~~~~s~~~~r--------C~~~~~l~E~DRiLRP~G~~i~rd-----~~~~~~~~~~~~~~l~W~~~~~~-~~~~e~~l 776 (796)
++......... +.+..+|-++=|+|+|||.|++.. ..+++..++.......+-.-... ....|.++
T Consensus 123 S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~ 202 (209)
T PRK11188 123 SDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYI 202 (209)
T ss_pred cCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEEECCccccccCceeEE
Confidence 75432211111 113568899999999999999942 23333333333222222111111 12468888
Q ss_pred EEEe
Q 003776 777 CVEK 780 (796)
Q Consensus 777 ~~~K 780 (796)
||..
T Consensus 203 ~~~~ 206 (209)
T PRK11188 203 VATG 206 (209)
T ss_pred Eeec
Confidence 8864
No 241
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=96.98 E-value=0.00024 Score=76.27 Aligned_cols=90 Identities=14% Similarity=0.262 Sum_probs=55.4
Q ss_pred cccccccCccccceeeeccCC-C-eEEEEeecCCCC-CChhHHHhhc-cccc-ccccccccCCCCccccccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI-S-VWVMNVISIDSP-DTLPIIYERG-LFGI-YHDWCESFSTYPRTYDLLHADHLFSKI 718 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~-~-vwvmnv~p~~~~-~~l~~i~eRG-lig~-~~~~ce~f~typrtyDl~Ha~~~~s~~ 718 (796)
-.+|||+|||.|.+++.|.+. + +-...|+-+|-. ..+..+-.|. -+.+ .+|. ..+|.-+.+||+|.+ +|+
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~-~~lp~~~~sfD~I~~--~~~-- 160 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASS-HRLPFADQSLDAIIR--IYA-- 160 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeec-ccCCCcCCceeEEEE--ecC--
Confidence 356999999999999888643 1 101234445544 5666665553 1111 1222 223322479999984 232
Q ss_pred cCCcchHHHHHhhcccccCCcEEEEe
Q 003776 719 KKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 719 ~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
. ..+-|+.|+|+|||++|+.
T Consensus 161 --~----~~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 161 --P----CKAEELARVVKPGGIVITV 180 (272)
T ss_pred --C----CCHHHHHhhccCCCEEEEE
Confidence 1 2357999999999999986
No 242
>PTZ00146 fibrillarin; Provisional
Probab=96.97 E-value=0.00029 Score=76.65 Aligned_cols=95 Identities=16% Similarity=0.196 Sum_probs=61.1
Q ss_pred ccccccCccccceeeeccCC-----CeEEEEeecCCCCCChhHHHhh-ccccccccccccc--CCCCccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-----SVWVMNVISIDSPDTLPIIYER-GLFGIYHDWCESF--STYPRTYDLLHADHLFS 716 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-----~vwvmnv~p~~~~~~l~~i~eR-Glig~~~~~ce~f--~typrtyDl~Ha~~~~s 716 (796)
-+|||+|||.|+|...|.+. .|+.+-+.|.-..+.+.++-.| +++.+..|.+.+. ....-++|+|=++-.
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva-- 211 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVA-- 211 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeCC--
Confidence 36999999999998888764 3666544432222344554444 5788888877543 111246788754332
Q ss_pred cccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 717 KIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 717 ~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
..=....+++++.|+|+|||+|+|.
T Consensus 212 ---~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 212 ---QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred ---CcchHHHHHHHHHHhccCCCEEEEE
Confidence 1112335678999999999999984
No 243
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=96.95 E-value=0.00087 Score=67.81 Aligned_cols=123 Identities=18% Similarity=0.247 Sum_probs=66.5
Q ss_pred ccccccCccccceeeeccCC-----CeEEEEeecCCCCCChhHHHhhccccccccccccc-------CCCCccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-----SVWVMNVISIDSPDTLPIIYERGLFGIYHDWCESF-------STYPRTYDLLHAD 712 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-----~vwvmnv~p~~~~~~l~~i~eRGlig~~~~~ce~f-------~typrtyDl~Ha~ 712 (796)
.+|||+|||.|+++.++..+ .|+..=+.|.. . + .|+--+.+|..+.. .+-+.+||+|=++
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~--~-~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----P--I-ENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----c--C-CCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 47999999999987766432 25554333321 0 0 13222233443321 0113578887764
Q ss_pred ccc--c-cc-----cCCcchHHHHHhhcccccCCcEEEEe-cc----HHHHHHHHHHHhcCCceEEEe-e----ccCCce
Q 003776 713 HLF--S-KI-----KKRCNLVAVVAEVDRILRPEGKLIVR-DD----VETINELESMVKGMQWEVRMT-Y----SKDKEG 774 (796)
Q Consensus 713 ~~~--s-~~-----~~rC~~~~~l~E~DRiLRP~G~~i~r-d~----~~~~~~~~~~~~~l~W~~~~~-~----~~~~e~ 774 (796)
... + .| ...+.+..+|-++-|+|||||.+++- -. .+++..++. .+ |.+.+. + ..+-|.
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~---~~-~~~~~~~~~~~~~~~~~~ 181 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK---LF-EKVKVTKPQASRKRSAEV 181 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh---hh-ceEEEeCCCCCCcccceE
Confidence 321 1 11 11233467899999999999999983 11 233333333 22 455443 1 123578
Q ss_pred EEEEE
Q 003776 775 LLCVE 779 (796)
Q Consensus 775 ~l~~~ 779 (796)
++||.
T Consensus 182 ~~~~~ 186 (188)
T TIGR00438 182 YIVAK 186 (188)
T ss_pred EEEEe
Confidence 88875
No 244
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.88 E-value=0.0094 Score=62.57 Aligned_cols=97 Identities=14% Similarity=0.058 Sum_probs=68.3
Q ss_pred CCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCC-CCCC-----CCCCceeE
Q 003776 390 TRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGT-ERLP-----FPGIVFDA 456 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~-e~LP-----fpd~SFDl 456 (796)
..++||||.=||..+..++.+ .|+++|+.+.....+. ++.+..|+. +.+.+..+ +.|+ ...++||+
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~-~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGL-ELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhH-HHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 679999998888655555543 8999999987766663 555555654 34444432 2222 45789999
Q ss_pred EEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 457 VHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 457 Vvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
||.-. |-.+-..++.++.++||+||.+++.-
T Consensus 153 aFvDa----dK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 153 AFVDA----DKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEEcc----chHHHHHHHHHHHhhcccccEEEEec
Confidence 99743 44444588899999999999999863
No 245
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=96.83 E-value=0.00041 Score=72.76 Aligned_cols=97 Identities=13% Similarity=0.183 Sum_probs=57.2
Q ss_pred cccccccCccccceeeeccCC---CeEEEEeecCCCC-CChhHHHhh----cc----cccccccccccCCCCcccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSP-DTLPIIYER----GL----FGIYHDWCESFSTYPRTYDLLHA 711 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~-~~l~~i~eR----Gl----ig~~~~~ce~f~typrtyDl~Ha 711 (796)
-..|||+|||.|.++..|..+ |-+ +|+-+|-. .-|..+-+| +. -=+..|++. ++ + ..+|+|.+
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~--~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~-~~~d~v~~ 128 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNV--KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH-VE-I-KNASMVIL 128 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CC-C-CCCCEEee
Confidence 356999999999998877653 211 23333332 333333222 21 112233332 22 1 35898887
Q ss_pred ccccccccCCcchHHHHHhhcccccCCcEEEEecc
Q 003776 712 DHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDD 746 (796)
Q Consensus 712 ~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~ 746 (796)
..++..+.. =....+|-+|-|+|+|||.+++.|.
T Consensus 129 ~~~l~~~~~-~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 129 NFTLQFLPP-EDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred ecchhhCCH-HHHHHHHHHHHHhcCCCeEEEEeec
Confidence 666543321 1245789999999999999999864
No 246
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=96.80 E-value=0.00035 Score=73.75 Aligned_cols=96 Identities=17% Similarity=0.255 Sum_probs=56.0
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----ccc--ccccccccccCCCCccccccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GLF--GIYHDWCESFSTYPRTYDLLHADHLFSKI 718 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gli--g~~~~~ce~f~typrtyDl~Ha~~~~s~~ 718 (796)
.|||++||+|-++..|...-----.|+-.|-. .-|.++-+| |+. =....=.+.+|.-..+||.|=+...|-..
T Consensus 50 ~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~ 129 (233)
T PF01209_consen 50 RVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNF 129 (233)
T ss_dssp EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-
T ss_pred EEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhh
Confidence 79999999999887776531111134444444 566655554 221 11111135566445899999866655544
Q ss_pred cCCcchHHHHHhhcccccCCcEEEEe
Q 003776 719 KKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 719 ~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
+.....|-||-|||||||.++|=
T Consensus 130 ---~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 130 ---PDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp ---SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---CCHHHHHHHHHHHcCCCeEEEEe
Confidence 35677899999999999999873
No 247
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.79 E-value=0.0037 Score=63.78 Aligned_cols=118 Identities=16% Similarity=0.084 Sum_probs=72.9
Q ss_pred ccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEc
Q 003776 368 NGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP--AISAVM 442 (796)
Q Consensus 368 ~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~ 442 (796)
+-....-+.|...|... .-.+.+|||+-||+|.++...+.| .|+.+|.++..+...+ +.+...+.. ......
T Consensus 23 PT~drvrealFniL~~~--~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~-~N~~~l~~~~~~~v~~~ 99 (183)
T PF03602_consen 23 PTTDRVREALFNILQPR--NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIK-KNLEKLGLEDKIRVIKG 99 (183)
T ss_dssp SSSHHHHHHHHHHHHCH---HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHH-HHHHHHT-GGGEEEEES
T ss_pred CCcHHHHHHHHHHhccc--ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHH-HHHHHhCCCcceeeecc
Confidence 33344445555555432 014789999999999999988776 7999999987665554 444444543 345555
Q ss_pred CC-CCC---CCCCCceeEEEEcCCCcccccc--hHHHHHHHH--hhcCCCcEEEEEe
Q 003776 443 GT-ERL---PFPGIVFDAVHCARCRVPWHIE--GGKLLLELN--RVLRPGGFFIWSA 491 (796)
Q Consensus 443 d~-e~L---Pfpd~SFDlVvss~~~l~w~~d--~~~~L~Ei~--RVLKPGG~fv~s~ 491 (796)
|. ..+ ......||+|++-.. +... ...+|..+. .+|+++|++++-.
T Consensus 100 d~~~~l~~~~~~~~~fDiIflDPP---Y~~~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 100 DAFKFLLKLAKKGEKFDIIFLDPP---YAKGLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp SHHHHHHHHHHCTS-EEEEEE--S---TTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred CHHHHHHhhcccCCCceEEEECCC---cccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 53 222 224678999999763 3332 266777776 8999999999873
No 248
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.79 E-value=0.0059 Score=70.12 Aligned_cols=122 Identities=24% Similarity=0.208 Sum_probs=79.0
Q ss_pred ccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC-eEEE
Q 003776 364 TQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISA 440 (796)
Q Consensus 364 t~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~ 440 (796)
..|.+........|.+.+.......+..+|||+=||.|.|+..|+++ .|+|+++++.++..|+ +.|+..++. +.+.
T Consensus 268 ~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~-~NA~~n~i~N~~f~ 346 (432)
T COG2265 268 RSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQ-ENAAANGIDNVEFI 346 (432)
T ss_pred CCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHH-HHHHHcCCCcEEEE
Confidence 35555444443333333322221235679999999999999999975 9999999999998887 667777766 4555
Q ss_pred EcCCCCCCCC---CCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 441 VMGTERLPFP---GIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 441 v~d~e~LPfp---d~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
..+++.+... ...||.|+.....-- -...+++.+. -++|-..+++|
T Consensus 347 ~~~ae~~~~~~~~~~~~d~VvvDPPR~G---~~~~~lk~l~-~~~p~~IvYVS 395 (432)
T COG2265 347 AGDAEEFTPAWWEGYKPDVVVVDPPRAG---ADREVLKQLA-KLKPKRIVYVS 395 (432)
T ss_pred eCCHHHHhhhccccCCCCEEEECCCCCC---CCHHHHHHHH-hcCCCcEEEEe
Confidence 5666555422 357899988541100 1124555554 45788888887
No 249
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.78 E-value=0.0023 Score=62.72 Aligned_cols=86 Identities=17% Similarity=0.197 Sum_probs=63.7
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHh--h-CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCC
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLF--D-RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL 447 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La--~-~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~L 447 (796)
......|...+..| .+..++|+|||.|-+..... + ..|+|+|++|..+..+. +.|.+..+.+.+.+++...+
T Consensus 34 asM~~~Ih~Tygdi----Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~-rNaeEfEvqidlLqcdildl 108 (185)
T KOG3420|consen 34 ASMLYTIHNTYGDI----EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFT-RNAEEFEVQIDLLQCDILDL 108 (185)
T ss_pred HHHHHHHHhhhccc----cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHh-hchHHhhhhhheeeeeccch
Confidence 33344444455443 37899999999997763332 2 38999999998887775 67777777777888888777
Q ss_pred CCCCCceeEEEEcC
Q 003776 448 PFPGIVFDAVHCAR 461 (796)
Q Consensus 448 Pfpd~SFDlVvss~ 461 (796)
-+..+.||.++.+.
T Consensus 109 e~~~g~fDtaviNp 122 (185)
T KOG3420|consen 109 ELKGGIFDTAVINP 122 (185)
T ss_pred hccCCeEeeEEecC
Confidence 77779999999875
No 250
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.78 E-value=0.029 Score=62.46 Aligned_cols=109 Identities=14% Similarity=0.085 Sum_probs=70.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC-CCCCCCceeEEEEcCCCc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER-LPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~-LPfpd~SFDlVvss~~~l 464 (796)
.++.++|||||++|.|+..|.++ .|++||..+.. .. ......+.+...+..+ .| +.+.+|+|+|-..
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~--~~-----L~~~~~V~h~~~d~fr~~p-~~~~vDwvVcDmv-- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMA--QS-----LMDTGQVEHLRADGFKFRP-PRKNVDWLVCDMV-- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcC--Hh-----hhCCCCEEEEeccCcccCC-CCCCCCEEEEecc--
Confidence 46889999999999999999987 69999966522 11 1122334555555433 33 2578999999751
Q ss_pred ccccchHHHHHHHHhhcCCC--cEEEEEeCCC-CCCchHHHHHHHHHH
Q 003776 465 PWHIEGGKLLLELNRVLRPG--GFFIWSATPV-YQKLPEDVEIWNAMS 509 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPG--G~fv~s~~~~-~~~l~El~~~~~~le 509 (796)
..|..++.-|.+.|..| ..+||..-+. -....+.+..+..+.
T Consensus 280 ---e~P~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~ 324 (357)
T PRK11760 280 ---EKPARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIE 324 (357)
T ss_pred ---cCHHHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35677778888888776 4677664333 334444444444343
No 251
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=96.77 E-value=0.00055 Score=73.15 Aligned_cols=92 Identities=18% Similarity=0.214 Sum_probs=55.2
Q ss_pred ccccccCccccceeeecc---CC--CeEEEEeecCCCC-CChhHHHhh----cccc---cccccccccCCCCcccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMK---DI--SVWVMNVISIDSP-DTLPIIYER----GLFG---IYHDWCESFSTYPRTYDLLHA 711 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~---~~--~vwvmnv~p~~~~-~~l~~i~eR----Glig---~~~~~ce~f~typrtyDl~Ha 711 (796)
.+|||+|||.|.++..+. .. .|..+ |.. ..+..+-++ |+-. +..++ +.++..+.+||+|++
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~~~v~gv-----D~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPTGKVIGV-----DMTPEMLAKARANARKAGYTNVEFRLGEI-EALPVADNSVDVIIS 152 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEE-----CCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhCCCCCCceeEEEE
Confidence 489999999987543222 21 23333 322 344444333 3210 11232 223333479999998
Q ss_pred ccccccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 712 DHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 712 ~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
..+|.... ....+|-|+=|+|||||.+++.+
T Consensus 153 ~~v~~~~~---d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 153 NCVINLSP---DKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred cCcccCCC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 77665432 34678999999999999999964
No 252
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=96.76 E-value=0.00079 Score=68.69 Aligned_cols=97 Identities=16% Similarity=0.271 Sum_probs=58.5
Q ss_pred cccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhhc-----ccccccccccccCCCCccccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYERG-----LFGIYHDWCESFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eRG-----lig~~~~~ce~f~typrtyDl~Ha~~~~s 716 (796)
-.+|||+|||.|.++.++... +. .-.++-++.. ..+..+-++. +--+.+|..+ ++.-+.+||+|++.+.+.
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~-~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPD-RGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA-LPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCC-CceEEEEECCHHHHHHHHHHhccCCCceEEecchhc-CCCCCCcEEEEEEeeeeC
Confidence 457999999999998887643 21 0012222222 3334444432 1111222222 232246899999776654
Q ss_pred cccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 717 KIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 717 ~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
.. ..+..+|-++-++|+|||++++.+
T Consensus 118 ~~---~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 118 NV---TDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred Cc---ccHHHHHHHHHHHcCCCcEEEEEE
Confidence 32 346678999999999999999853
No 253
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.76 E-value=0.0059 Score=70.02 Aligned_cols=97 Identities=24% Similarity=0.320 Sum_probs=75.4
Q ss_pred EEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCccccc
Q 003776 392 VVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHI 468 (796)
Q Consensus 392 ~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~ 468 (796)
++|-+|||.-.+...+.+. .|+.+|+|+..++..++..+. ......+...+...+.|++.+||+|+.-.. ++...
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~-~~~~~~~~~~d~~~l~fedESFdiVIdkGt-lDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK-ERPEMQMVEMDMDQLVFEDESFDIVIDKGT-LDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc-CCcceEEEEecchhccCCCcceeEEEecCc-ccccc
Confidence 8999999999998888774 899999999988877766662 223345667788999999999999998542 22111
Q ss_pred ----------chHHHHHHHHhhcCCCcEEEEE
Q 003776 469 ----------EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 469 ----------d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.....+.++.|+|+|||.++..
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence 1236689999999999998854
No 254
>PRK14968 putative methyltransferase; Provisional
Probab=96.75 E-value=0.0017 Score=64.58 Aligned_cols=118 Identities=17% Similarity=0.265 Sum_probs=73.1
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHH---------hhcccccccccccccCCCCcccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIY---------ERGLFGIYHDWCESFSTYPRTYDLLHADH 713 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~---------eRGlig~~~~~ce~f~typrtyDl~Ha~~ 713 (796)
-+.|||+|||.|.++..|..+.. +|+-++-. ..+..+. .||+.-+.+|+...++. ..||+|=++.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~d~vi~n~ 98 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG--DKFDVILFNP 98 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc--cCceEEEECC
Confidence 45699999999999998877632 33333433 3333331 22244456677776653 4899985444
Q ss_pred ccccc------------------cCCcchHHHHHhhcccccCCcEEEEe-ccHHHHHHHHHHHhcCCceEEE
Q 003776 714 LFSKI------------------KKRCNLVAVVAEVDRILRPEGKLIVR-DDVETINELESMVKGMQWEVRM 766 (796)
Q Consensus 714 ~~s~~------------------~~rC~~~~~l~E~DRiLRP~G~~i~r-d~~~~~~~~~~~~~~l~W~~~~ 766 (796)
-|... ..+..+..++-++-|+|+|||++++- ........+..++...-|++..
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 170 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEV 170 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeee
Confidence 33210 01233567899999999999998763 1122345677777777777654
No 255
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=96.75 E-value=0.00093 Score=68.31 Aligned_cols=111 Identities=14% Similarity=0.232 Sum_probs=65.2
Q ss_pred cccccCccccceeeeccC---C--CeEEEEeecCCCCCChhHHH----hhcccc----cccccccccCCCCccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKD---I--SVWVMNVISIDSPDTLPIIY----ERGLFG----IYHDWCESFSTYPRTYDLLHAD 712 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~---~--~vwvmnv~p~~~~~~l~~i~----eRGlig----~~~~~ce~f~typrtyDl~Ha~ 712 (796)
.|||||||.|.|+..+.. . .|+.+-.-| ..+..+- .-|+.. +..|..+.++.++..||+|...
T Consensus 43 ~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~----~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~ 118 (198)
T PRK00377 43 MILDIGCGTGSVTVEASLLVGETGKVYAVDKDE----KAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIG 118 (198)
T ss_pred EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCH----HHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence 699999999999776532 1 244332222 2233221 123211 1123333333334568887743
Q ss_pred cccccccCCcchHHHHHhhcccccCCcEEEEe-ccHHHHHHHHHHHhcCCceEEE
Q 003776 713 HLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR-DDVETINELESMVKGMQWEVRM 766 (796)
Q Consensus 713 ~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r-d~~~~~~~~~~~~~~l~W~~~~ 766 (796)
+ ....+..+|-++-|+|+|||.+++. -..+.+.++...++.+.++..+
T Consensus 119 ~------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~~~ 167 (198)
T PRK00377 119 G------GSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFNLEI 167 (198)
T ss_pred C------CcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCCeEE
Confidence 2 2235677889999999999999983 3455667777777766666544
No 256
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.73 E-value=0.0025 Score=68.35 Aligned_cols=104 Identities=16% Similarity=0.258 Sum_probs=59.1
Q ss_pred CCCEEEEECCCCchhHHHHhh-C--CeEEEeCChhhHHHHHHHH---------------HHHcCC-----------C--e
Q 003776 389 RTRVVLDVGCGVASFGGFLFD-R--GVLTMSFAPKDEHEAQVQF---------------ALERGI-----------P--A 437 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~-~--~V~gvDiSp~dl~~A~~q~---------------A~ergl-----------~--~ 437 (796)
++.++||||||+-.+-..-+. . .|+..|.++.....-+.-. +...|- . +
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 467999999999654322222 1 7999999887654332111 000110 0 1
Q ss_pred -EEEEcCC-CCCCCCC-----CceeEEEEcCCCcccccch---HHHHHHHHhhcCCCcEEEEEeC
Q 003776 438 -ISAVMGT-ERLPFPG-----IVFDAVHCARCRVPWHIEG---GKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 438 -~~~v~d~-e~LPfpd-----~SFDlVvss~~~l~w~~d~---~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
..+.+|. ..-|+.. ..||+|++.+|+---+.++ ..+++.+.++|||||.|++...
T Consensus 136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV 200 (256)
T ss_dssp EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 1333454 2233432 3599999998732222344 5789999999999999998754
No 257
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=96.72 E-value=0.00065 Score=71.97 Aligned_cols=96 Identities=19% Similarity=0.283 Sum_probs=65.1
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhcc-cc-----cccccccccCCCCcccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGL-FG-----IYHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGl-ig-----~~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
-+|||++||+|=+|..|.+.-= .-.|+-.|-. +-|.++-+|-- .| ..+-=-|.+|+..++||++-+...|-.
T Consensus 53 ~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrn 131 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRN 131 (238)
T ss_pred CEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhc
Confidence 4699999999999999876421 2334444444 55666666543 12 112222556655699999986665554
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
.. .+...|=||-|||+|||.+++=
T Consensus 132 v~---d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 132 VT---DIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred CC---CHHHHHHHHHHhhcCCeEEEEE
Confidence 44 6788999999999999988763
No 258
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.72 E-value=0.01 Score=61.58 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=71.3
Q ss_pred cccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEE
Q 003776 367 KNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAV 441 (796)
Q Consensus 367 ~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v 441 (796)
+..+..-+..|.+....+ .++.+|+|||+-+|+++..++++ .|+++|+.|..... | +.++.
T Consensus 26 RSRAa~KL~el~~k~~i~---~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~---------~--V~~iq 91 (205)
T COG0293 26 RSRAAYKLLELNEKFKLF---KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIP---------G--VIFLQ 91 (205)
T ss_pred cchHHHHHHHHHHhcCee---cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCC---------C--ceEEe
Confidence 344444455566665432 46889999999999999998875 49999998854321 1 45555
Q ss_pred cCCCCC--------CCCCCceeEEEEcCC---Ccccccch-------HHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 442 MGTERL--------PFPGIVFDAVHCARC---RVPWHIEG-------GKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 442 ~d~e~L--------Pfpd~SFDlVvss~~---~l~w~~d~-------~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
.|...- -+....+|+|+|-.+ .-+|..|. ..++.-...+|+|||.|++-..-+
T Consensus 92 ~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 92 GDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred eeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 554221 134445899997441 11222222 234455678999999999875433
No 259
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.72 E-value=0.011 Score=64.34 Aligned_cols=104 Identities=18% Similarity=0.136 Sum_probs=67.9
Q ss_pred CCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC---eEEEEcCCCC-CC--CCCCceeEEEEc
Q 003776 390 TRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP---AISAVMGTER-LP--FPGIVFDAVHCA 460 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~---~~~~v~d~e~-LP--fpd~SFDlVvss 460 (796)
+.+|||+=|=||.|+.+.+.. .|+.+|.|...+..++..++. .++. +.+...|+.. |. -..+.||+|++-
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~l-Ng~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAAL-NGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHH-TT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 679999999999999877653 799999999999888855544 4443 4556666421 21 123689999995
Q ss_pred CCCccccc-----chHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 461 RCRVPWHI-----EGGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 461 ~~~l~w~~-----d~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
...+.-.. +...++..+.++|+|||.++++....
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 43222111 34578888999999999999875533
No 260
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.71 E-value=0.0016 Score=69.29 Aligned_cols=132 Identities=16% Similarity=0.278 Sum_probs=75.6
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhh---cc----cccccccccccCCCCcccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYER---GL----FGIYHDWCESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eR---Gl----ig~~~~~ce~f~typrtyDl~Ha~~~~ 715 (796)
.+|||+|||.|.++.+|... |-+ .|+-+|.. ..+..+-++ ++ -=+..|+..+++ +..||+|-++--+
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~~--~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy 185 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPDA--EVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVSNPPY 185 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEECCCc
Confidence 36999999999999888654 211 23333333 333333322 21 112234544443 4789999765332
Q ss_pred cccc--------------------CCcc---hHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCCce-EEE-eecc
Q 003776 716 SKIK--------------------KRCN---LVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWE-VRM-TYSK 770 (796)
Q Consensus 716 s~~~--------------------~rC~---~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W~-~~~-~~~~ 770 (796)
.... .... +..++-++-++|+|||++++.-....-..++.++....|. +.. .+-.
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~d~~ 265 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRKDLA 265 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEecCCC
Confidence 2110 0001 2456778889999999999964434445677777655554 222 2445
Q ss_pred CCceEEEEEe
Q 003776 771 DKEGLLCVEK 780 (796)
Q Consensus 771 ~~e~~l~~~K 780 (796)
+.+++++++|
T Consensus 266 ~~~r~~~~~~ 275 (275)
T PRK09328 266 GRDRVVLGRR 275 (275)
T ss_pred CCceEEEEEC
Confidence 6778888764
No 261
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.70 E-value=0.012 Score=63.66 Aligned_cols=107 Identities=19% Similarity=0.143 Sum_probs=61.1
Q ss_pred HHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh-----CCeEEEeCChhhHHHHHHHHHHHc-CCCeEEEEcC--CCC
Q 003776 375 DFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALER-GIPAISAVMG--TER 446 (796)
Q Consensus 375 d~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~-----~~V~gvDiSp~dl~~A~~q~A~er-gl~~~~~v~d--~e~ 446 (796)
..|...+|. -.+.+|||+|||+|...-++.. ..++++|.++.|+..++. .+... .......... ...
T Consensus 23 ~El~~r~p~----f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~-l~~~~~~~~~~~~~~~~~~~~ 97 (274)
T PF09243_consen 23 SELRKRLPD----FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKR-LLRAGPNNRNAEWRRVLYRDF 97 (274)
T ss_pred HHHHHhCcC----CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHH-HHhcccccccchhhhhhhccc
Confidence 444555554 3467999999999975554443 278999999999877653 33221 1111101111 122
Q ss_pred CCCCCCceeEEEEcCCCcccccc--hHHHHHHHHhhcCCCcEEEEEe
Q 003776 447 LPFPGIVFDAVHCARCRVPWHIE--GGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 447 LPfpd~SFDlVvss~~~l~w~~d--~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+++.. .|+|++++. +....+ ...++..+.+.+.+ +|+|..
T Consensus 98 ~~~~~--~DLvi~s~~-L~EL~~~~r~~lv~~LW~~~~~--~LVlVE 139 (274)
T PF09243_consen 98 LPFPP--DDLVIASYV-LNELPSAARAELVRSLWNKTAP--VLVLVE 139 (274)
T ss_pred ccCCC--CcEEEEehh-hhcCCchHHHHHHHHHHHhccC--cEEEEc
Confidence 34432 399999884 333333 24555555555555 777763
No 262
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=96.64 E-value=0.00082 Score=71.16 Aligned_cols=97 Identities=11% Similarity=0.211 Sum_probs=56.4
Q ss_pred ccccccCccccceeeeccC---CCeEEEEeecCCCC-CChhHHHhh----cc---cccccccccccCCCCcccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKD---ISVWVMNVISIDSP-DTLPIIYER----GL---FGIYHDWCESFSTYPRTYDLLHADH 713 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~---~~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig~~~~~ce~f~typrtyDl~Ha~~ 713 (796)
..|||+|||.|.++.+|.. .|-+ .|+-+|.. .-|..+-+| |+ |-+++.-...++. ..||+|-+..
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~--~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~--~~~D~vv~~~ 133 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNC--KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMVVLNF 133 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC--CCCCEEehhh
Confidence 4599999999999877754 2322 23333332 333333222 22 2222211122221 3488877665
Q ss_pred ccccccCCcchHHHHHhhcccccCCcEEEEecc
Q 003776 714 LFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDD 746 (796)
Q Consensus 714 ~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~ 746 (796)
.|..+. ......+|-+|-|+|+|||.+++.|.
T Consensus 134 ~l~~l~-~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 134 TLQFLE-PSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHHhCC-HHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 554332 23356789999999999999999763
No 263
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=96.64 E-value=0.00074 Score=69.40 Aligned_cols=100 Identities=18% Similarity=0.263 Sum_probs=64.8
Q ss_pred ccccccccccccCccccceeeeccCC--CeEEEEeecCCCCCChhHHHhh--cccc---cccccccccCCCCcccccccc
Q 003776 639 INWSTVRNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSPDTLPIIYER--GLFG---IYHDWCESFSTYPRTYDLLHA 711 (796)
Q Consensus 639 i~w~~iRnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~~~l~~i~eR--Glig---~~~~~ce~f~typrtyDl~Ha 711 (796)
+.-.+||++++.|||-|-|.+.|..+ .+.++-++|. -|..+-+| |+-. +-.+..+..| +.+|||||.
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~----Al~~Ar~Rl~~~~~V~~~~~dvp~~~P--~~~FDLIV~ 112 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPR----ALARARERLAGLPHVEWIQADVPEFWP--EGRFDLIVL 112 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HH----HHHHHHHHTTT-SSEEEEES-TTT-----SS-EEEEEE
T ss_pred cCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHH----HHHHHHHhcCCCCCeEEEECcCCCCCC--CCCeeEEEE
Confidence 55678999999999999999999876 5677655442 22222222 1111 1122233333 589999999
Q ss_pred ccccccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 712 DHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 712 ~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
+-+|=-+.+.-.+..++-.|...|+|||.+|+-
T Consensus 113 SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g 145 (201)
T PF05401_consen 113 SEVLYYLDDAEDLRAALDRLVAALAPGGHLVFG 145 (201)
T ss_dssp ES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 988887776667777888899999999999984
No 264
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.62 E-value=0.0097 Score=61.14 Aligned_cols=107 Identities=18% Similarity=0.161 Sum_probs=71.1
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCcc
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l~ 465 (796)
.+++|||+|.|+|..+..-+.. .|+..|+.|.- ..+....+...|+.+.+...+.- ..+..||+|+..- +.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~-~~ai~lNa~angv~i~~~~~d~~---g~~~~~Dl~LagD--lf 152 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWL-EQAIRLNAAANGVSILFTHADLI---GSPPAFDLLLAGD--LF 152 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHH-HHHhhcchhhccceeEEeecccc---CCCcceeEEEeec--ee
Confidence 4789999999999766555443 78999998743 34444556666766555544332 2567899999986 33
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEeCCCCCCchHH
Q 003776 466 WHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPED 501 (796)
Q Consensus 466 w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~El 501 (796)
+.......|..+.+.|+-.|..++...|...++++.
T Consensus 153 y~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~lpk~ 188 (218)
T COG3897 153 YNHTEADRLIPWKDRLAEAGAAVLVGDPGRAYLPKK 188 (218)
T ss_pred cCchHHHHHHHHHHHHHhCCCEEEEeCCCCCCCchh
Confidence 333343444448888888787776667777777663
No 265
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.61 E-value=0.028 Score=57.64 Aligned_cols=132 Identities=19% Similarity=0.114 Sum_probs=80.8
Q ss_pred CcccccCCCCccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHH
Q 003776 354 GEYLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFA 430 (796)
Q Consensus 354 g~~~~Fpgggt~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A 430 (796)
+..+.+|.+ ...++-.+..-..|..++... .-.+.++||+=+|+|.++...+.| .++.+|.+.......+ ++.
T Consensus 11 gr~L~~p~~-~~~RPT~drVREalFNil~~~--~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~-~N~ 86 (187)
T COG0742 11 GRKLKTPDG-PGTRPTTDRVREALFNILAPD--EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILK-ENL 86 (187)
T ss_pred CCcccCCCC-CCcCCCchHHHHHHHHhcccc--ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHH-HHH
Confidence 344444443 223344455555566665431 024789999999999999988876 7999999887665554 334
Q ss_pred HHcC--CCeEEEEcCCC-CCCCCCC--ceeEEEEcCCCccccc-chHHHHHH--HHhhcCCCcEEEEE
Q 003776 431 LERG--IPAISAVMGTE-RLPFPGI--VFDAVHCARCRVPWHI-EGGKLLLE--LNRVLRPGGFFIWS 490 (796)
Q Consensus 431 ~erg--l~~~~~v~d~e-~LPfpd~--SFDlVvss~~~l~w~~-d~~~~L~E--i~RVLKPGG~fv~s 490 (796)
...+ .....+..++. .|+-... .||+|+.-.. .++.. +....+.. -..+|+|+|.+++-
T Consensus 87 ~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPP-y~~~l~~~~~~~~~~~~~~~L~~~~~iv~E 153 (187)
T COG0742 87 KALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPP-YAKGLLDKELALLLLEENGWLKPGALIVVE 153 (187)
T ss_pred HHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCC-CccchhhHHHHHHHHHhcCCcCCCcEEEEE
Confidence 4444 34455555543 2222223 4999999764 22211 22333333 56889999999987
No 266
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=96.61 E-value=0.0014 Score=68.45 Aligned_cols=117 Identities=18% Similarity=0.328 Sum_probs=70.6
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHH----Hhhcc--ccc-ccccccccCCCCcccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPII----YERGL--FGI-YHDWCESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i----~eRGl--ig~-~~~~ce~f~typrtyDl~Ha~~~~ 715 (796)
..|||+|||.|.|+.+|... +-+ +|+-+|.. ..+..+ -..|+ +-+ ..|+-..++ +..||+|-++--|
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy 164 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDA--RVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP--GGKFDLIVSNPPY 164 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc--CCceeEEEECCCC
Confidence 36999999999999988764 211 33333332 223222 22343 122 224434343 3689999876444
Q ss_pred ccc------cCCcc-----------------hHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCCceEE
Q 003776 716 SKI------KKRCN-----------------LVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWEVR 765 (796)
Q Consensus 716 s~~------~~rC~-----------------~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W~~~ 765 (796)
... ...+. +..++-++-|+|+|||++++.........+++++....|...
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADV 237 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCce
Confidence 321 11111 135677899999999999997655556778888877777543
No 267
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=96.58 E-value=0.0013 Score=67.11 Aligned_cols=118 Identities=14% Similarity=0.197 Sum_probs=66.1
Q ss_pred cccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhH----HHhhccccc---cccccccc-CCCC-ccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPI----IYERGLFGI---YHDWCESF-STYP-RTYDLLHAD 712 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~----i~eRGlig~---~~~~ce~f-~typ-rtyDl~Ha~ 712 (796)
-+.|||+|||.|.|+.+|... |- .||+-++-. .-+.. +-.+|+-.+ ..|.-.-. ..+| .++|+|+..
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~--~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPD--KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCC--CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 357999999999999888754 21 122222222 22222 223343111 11111101 1234 489988754
Q ss_pred cccccc------cCCcchHHHHHhhcccccCCcEEEEe-ccHHHHHHHHHHH-hcCCceE
Q 003776 713 HLFSKI------KKRCNLVAVVAEVDRILRPEGKLIVR-DDVETINELESMV-KGMQWEV 764 (796)
Q Consensus 713 ~~~s~~------~~rC~~~~~l~E~DRiLRP~G~~i~r-d~~~~~~~~~~~~-~~l~W~~ 764 (796)
.- ..| ..|+....+|-++-|+|+|||.+++. |.......+...+ ..-+|+.
T Consensus 95 ~p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 95 FP-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred CC-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence 21 122 24566678899999999999999986 5555566554444 4334554
No 268
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.57 E-value=0.011 Score=69.50 Aligned_cols=77 Identities=12% Similarity=-0.027 Sum_probs=47.1
Q ss_pred CCCEEEEECCCCchhHHHHhh------------CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCC--CC---CCCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFD------------RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTE--RL---PFPG 451 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~------------~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e--~L---Pfpd 451 (796)
...+|||.|||+|.|...++. .+++++|+++..+..+.................+.. .+ .-..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 356899999999998887753 257899999887776664443322122222222210 01 1112
Q ss_pred CceeEEEEcCCCcc
Q 003776 452 IVFDAVHCARCRVP 465 (796)
Q Consensus 452 ~SFDlVvss~~~l~ 465 (796)
+.||+|+++..+..
T Consensus 111 ~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 111 DLFDIVITNPPYGR 124 (524)
T ss_pred CcccEEEeCCCccc
Confidence 57999999875443
No 269
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=96.56 E-value=0.00096 Score=69.40 Aligned_cols=94 Identities=16% Similarity=0.284 Sum_probs=60.4
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----cccc--cccccccccCCCCccccccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GLFG--IYHDWCESFSTYPRTYDLLHADHLFSKI 718 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig--~~~~~ce~f~typrtyDl~Ha~~~~s~~ 718 (796)
.|||+|||.|.|+..|.... .+|+-++.. ..+..+-+| |+-. +..++..-....+.+||+|.+.++|...
T Consensus 51 ~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~ 127 (233)
T PRK05134 51 RVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV 127 (233)
T ss_pred eEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc
Confidence 48999999999998887654 234444433 334333333 3211 1223322211234689999988877755
Q ss_pred cCCcchHHHHHhhcccccCCcEEEEec
Q 003776 719 KKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 719 ~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
. ....+|-.+.|+|+|||++++..
T Consensus 128 ~---~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 128 P---DPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred C---CHHHHHHHHHHHcCCCcEEEEEe
Confidence 4 34567999999999999999864
No 270
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=96.55 E-value=0.0011 Score=68.17 Aligned_cols=95 Identities=15% Similarity=0.277 Sum_probs=57.5
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----cc--cccccccccccC-CCCccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GL--FGIYHDWCESFS-TYPRTYDLLHADHLFS 716 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig~~~~~ce~f~-typrtyDl~Ha~~~~s 716 (796)
-+|||+|||.|.|+..|.....-++ =++.. ..+..+-.+ |+ +-+.+.-.+.++ ..+.+||+|.+.+++.
T Consensus 47 ~~vLdlG~G~G~~~~~l~~~~~~v~---~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 47 LRVLDVGCGGGLLSEPLARLGANVT---GIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CeEEEECCCCCHHHHHHHhcCCeEE---EEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 4799999999999887765432222 22222 223322221 22 111111111122 2257899999887775
Q ss_pred cccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 717 KIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 717 ~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
... ....+|-++-|+|+|||++++..
T Consensus 124 ~~~---~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 124 HVP---DPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred hCC---CHHHHHHHHHHhcCCCcEEEEEe
Confidence 443 45678999999999999999864
No 271
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.55 E-value=0.0088 Score=62.16 Aligned_cols=118 Identities=16% Similarity=0.067 Sum_probs=60.6
Q ss_pred ccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh---C-CeEEEeCChhhHHHHHHHHH------HHcCC
Q 003776 366 FKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD---R-GVLTMSFAPKDEHEAQVQFA------LERGI 435 (796)
Q Consensus 366 F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~---~-~V~gvDiSp~dl~~A~~q~A------~ergl 435 (796)
|..-.......+.+.+.. .+....+|||||.|......+- . ..+|+++.+.-...|..... ...|.
T Consensus 23 YGEi~~~~~~~il~~~~l----~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~ 98 (205)
T PF08123_consen 23 YGEISPEFVSKILDELNL----TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK 98 (205)
T ss_dssp GGGCHHHHHHHHHHHTT------TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB
T ss_pred eeecCHHHHHHHHHHhCC----CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc
Confidence 333333444555555542 4578999999999975544332 2 59999998865444432111 11233
Q ss_pred C---eEEEEcCCCCCCCCC---CceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEE
Q 003776 436 P---AISAVMGTERLPFPG---IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIW 489 (796)
Q Consensus 436 ~---~~~~v~d~e~LPfpd---~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~ 489 (796)
. +.+..+|....++.. ..-|+|+++. ..+..++...|.++..-||||-++|-
T Consensus 99 ~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn--~~F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 99 RPGKVELIHGDFLDPDFVKDIWSDADVVFVNN--TCFDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp ---EEEEECS-TTTHHHHHHHGHC-SEEEE----TTT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred ccccceeeccCccccHhHhhhhcCCCEEEEec--cccCHHHHHHHHHHHhcCCCCCEEEE
Confidence 2 233334332222110 2369999986 34455677788888899999988763
No 272
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.52 E-value=0.0017 Score=55.98 Aligned_cols=95 Identities=20% Similarity=0.265 Sum_probs=56.3
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHH---hhc---ccccc-cccccccCCCCcccccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIY---ERG---LFGIY-HDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~---eRG---lig~~-~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
+++|+|||.|++...+...+. ..+.-.+.. ..+..+- ..+ .+-++ .++......-+..||++.+...+..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCC--CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 479999999999988876321 122222322 2222221 112 11111 2333222223578999998888765
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
+ .=....+|-.+-++|||||++++.
T Consensus 79 ~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3 123466788889999999999986
No 273
>PRK05785 hypothetical protein; Provisional
Probab=96.48 E-value=0.0012 Score=69.17 Aligned_cols=87 Identities=17% Similarity=0.277 Sum_probs=59.1
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhhcccccccccccccCCCCccccccccccccccccCCc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKKRC 722 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~~ce~f~typrtyDl~Ha~~~~s~~~~rC 722 (796)
..|||+|||+|-++..|... +. +|+-+|-. +-|..+-+++ ..++.-.+.+|.-+.+||+|.+...+-. --
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~~~---~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~lp~~d~sfD~v~~~~~l~~---~~ 124 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVFKY---YVVALDYAENMLKMNLVAD--DKVVGSFEALPFRDKSFDVVMSSFALHA---SD 124 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhcCC---EEEEECCCHHHHHHHHhcc--ceEEechhhCCCCCCCEEEEEecChhhc---cC
Confidence 57999999999998888765 22 45555554 4555555543 1223334555544589999998776533 23
Q ss_pred chHHHHHhhcccccCCc
Q 003776 723 NLVAVVAEVDRILRPEG 739 (796)
Q Consensus 723 ~~~~~l~E~DRiLRP~G 739 (796)
.+..+|-||-|||||.+
T Consensus 125 d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 125 NIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CHHHHHHHHHHHhcCce
Confidence 56788999999999953
No 274
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.48 E-value=0.035 Score=58.14 Aligned_cols=117 Identities=21% Similarity=0.139 Sum_probs=73.3
Q ss_pred cccHHHHHHHHHHhCcccccCCC-CCEEEEECCCCchhHHHHh----hCCeEEEeCChhhHHHHHHHHHHHcCCC-eEEE
Q 003776 367 KNGALHYIDFIQESVPDVAWGKR-TRVVLDVGCGVASFGGFLF----DRGVLTMSFAPKDEHEAQVQFALERGIP-AISA 440 (796)
Q Consensus 367 ~~~a~~yid~L~e~Lp~i~~~~~-~~~VLDIGCGtG~~a~~La----~~~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~ 440 (796)
.....-|.+++.+.+........ ..+++|||.|.|.-+..|+ +.+|+-+|....-+.--+ ..+.+.+++ +.++
T Consensus 44 ~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~-~~~~eL~L~nv~i~ 122 (215)
T COG0357 44 RDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLR-EVKKELGLENVEIV 122 (215)
T ss_pred CCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHH-HHHHHhCCCCeEEe
Confidence 33334455555555443222223 5899999999998777765 237888887665433222 445566887 4555
Q ss_pred EcCCCCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEE
Q 003776 441 VMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIW 489 (796)
Q Consensus 441 v~d~e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~ 489 (796)
..-++.+.-...-||+|.|-. + .++..++.-+...||+||.|++
T Consensus 123 ~~RaE~~~~~~~~~D~vtsRA--v---a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 123 HGRAEEFGQEKKQYDVVTSRA--V---ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred hhhHhhcccccccCcEEEeeh--c---cchHHHHHHHHHhcccCCcchh
Confidence 555666652211199999853 2 2456677778999999998863
No 275
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.46 E-value=0.0015 Score=65.61 Aligned_cols=139 Identities=16% Similarity=0.200 Sum_probs=70.5
Q ss_pred cccccccccccCccccceeeeccCCC-----eEEEEeecCCCCCChhHHHhhccc---ccccccccccCCCCcccccccc
Q 003776 640 NWSTVRNVMDMRSVYGGFAAAMKDIS-----VWVMNVISIDSPDTLPIIYERGLF---GIYHDWCESFSTYPRTYDLLHA 711 (796)
Q Consensus 640 ~w~~iRnvmDm~~g~g~faA~l~~~~-----vwvmnv~p~~~~~~l~~i~eRGli---g~~~~~ce~f~typrtyDl~Ha 711 (796)
..+.-++|||+||+.|||..++..+. |+-+-+.|......+.++ +|=| .........++.-.+.+|||-+
T Consensus 20 ~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~~ 97 (181)
T PF01728_consen 20 KPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVLS 97 (181)
T ss_dssp -TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEEE
T ss_pred CcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceecc
Confidence 33467999999999999999998876 444444444322222222 3311 1122233333321268999999
Q ss_pred ccccccccCC---cc--h---HHHHHhhcccccCCcEEEEe-----ccHHHHHHHHHHHhcCCceEEEe-eccCCceEEE
Q 003776 712 DHLFSKIKKR---CN--L---VAVVAEVDRILRPEGKLIVR-----DDVETINELESMVKGMQWEVRMT-YSKDKEGLLC 777 (796)
Q Consensus 712 ~~~~s~~~~r---C~--~---~~~l~E~DRiLRP~G~~i~r-----d~~~~~~~~~~~~~~l~W~~~~~-~~~~~e~~l~ 777 (796)
|..+..-..+ .. + ...|.=+-+.|||||.+|+. +..+++..++..-..+++-.-.. ..++.|.++|
T Consensus 98 D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~Kp~~sr~~s~E~Ylv 177 (181)
T PF01728_consen 98 DMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIVKPPSSRSESSEEYLV 177 (181)
T ss_dssp -------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEEE-TTSBTTCBEEEEE
T ss_pred ccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEEECcCCCCCccEEEEE
Confidence 8855432211 11 1 12222333569999988874 22356666666545443322111 2235688888
Q ss_pred EEe
Q 003776 778 VEK 780 (796)
Q Consensus 778 ~~K 780 (796)
|.+
T Consensus 178 ~~~ 180 (181)
T PF01728_consen 178 CRG 180 (181)
T ss_dssp SEE
T ss_pred EcC
Confidence 864
No 276
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.41 E-value=0.018 Score=70.09 Aligned_cols=121 Identities=18% Similarity=0.240 Sum_probs=69.3
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHh----hccc-c----cccccccccCCCCccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYE----RGLF-G----IYHDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGli-g----~~~~~ce~f~typrtyDl~Ha~~~ 714 (796)
+.|||++||+|+|+.++.....- .|+-+|.. .-|..+-+ -|+- . +-.|..+.+..+.++||+|=++-=
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 67999999999999988876432 23334443 22222211 2331 0 223333322223578999875421
Q ss_pred -cccccC-------CcchHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCCceEEEe
Q 003776 715 -FSKIKK-------RCNLVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWEVRMT 767 (796)
Q Consensus 715 -~s~~~~-------rC~~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W~~~~~ 767 (796)
|..-.. .=.+..++-..=|+|+|||.+++......+......+....+.++..
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i 678 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEI 678 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEE
Confidence 111000 01234667777899999999999755554445566666667777654
No 277
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.27 E-value=0.037 Score=53.77 Aligned_cols=102 Identities=21% Similarity=0.110 Sum_probs=61.1
Q ss_pred CCCCEEEEECCCCchhHHHHhh-----C---CeEEEeCChhhHHHHHHHHHHHcCCC----eEEEEcCCCCCCCCCCcee
Q 003776 388 KRTRVVLDVGCGVASFGGFLFD-----R---GVLTMSFAPKDEHEAQVQFALERGIP----AISAVMGTERLPFPGIVFD 455 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~-----~---~V~gvDiSp~dl~~A~~q~A~ergl~----~~~~v~d~e~LPfpd~SFD 455 (796)
.+..+|+|+|||.|+++..|+. . .|+++|..+..+..++ .++++.+.. ..+........+ .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQ-KRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHH-HHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 4578999999999999999987 3 8999999998776665 444443311 111222111111 134566
Q ss_pred EEEEcCCCcccccchH-HHHHHHHhhcCCCcEEEEEeCCCCCCc
Q 003776 456 AVHCARCRVPWHIEGG-KLLLELNRVLRPGGFFIWSATPVYQKL 498 (796)
Q Consensus 456 lVvss~~~l~w~~d~~-~~L~Ei~RVLKPGG~fv~s~~~~~~~l 498 (796)
+++. +|-+-++. .+|+-+.+ |+-.+++.++=+|..+
T Consensus 102 ~~vg----LHaCG~Ls~~~l~~~~~---~~~~~l~~vpCCyh~l 138 (141)
T PF13679_consen 102 ILVG----LHACGDLSDRALRLFIR---PNARFLVLVPCCYHKL 138 (141)
T ss_pred EEEE----eecccchHHHHHHHHHH---cCCCEEEEcCCccchh
Confidence 6665 44455664 44444444 7766665545455543
No 278
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=96.26 E-value=0.0014 Score=63.81 Aligned_cols=97 Identities=16% Similarity=0.305 Sum_probs=61.5
Q ss_pred ccccccCccccceeeeccC-C--CeEEEEeecCCCCCChhHHHh----hccc--c-cccccccccCC-CCcccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKD-I--SVWVMNVISIDSPDTLPIIYE----RGLF--G-IYHDWCESFST-YPRTYDLLHADH 713 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~-~--~vwvmnv~p~~~~~~l~~i~e----RGli--g-~~~~~ce~f~t-yprtyDl~Ha~~ 713 (796)
-+|||+|||+|-++-.|.+ . +.=++.|=... ..+..+-. .|+- = +..|+-+ ++. |+..||+|.+..
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~--~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGVDISE--EMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISNG 81 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSH--HHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEES
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcH--HHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEcC
Confidence 4699999999999888873 1 33344443322 33333333 3431 1 2234433 332 458899999888
Q ss_pred ccccccCCcchHHHHHhhcccccCCcEEEEeccH
Q 003776 714 LFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDV 747 (796)
Q Consensus 714 ~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~ 747 (796)
+|.. -.....+|-+|=|.|+|+|.+++.+..
T Consensus 82 ~l~~---~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHH---FPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGG---TSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhh---ccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 7732 234556788999999999999998665
No 279
>PRK04266 fibrillarin; Provisional
Probab=96.26 E-value=0.0015 Score=68.84 Aligned_cols=89 Identities=16% Similarity=0.264 Sum_probs=50.8
Q ss_pred cccccCccccceeeeccCC----CeEEEEeecCCCCCChh----HHHhh-ccccccccccccc--CCCCccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDI----SVWVMNVISIDSPDTLP----IIYER-GLFGIYHDWCESF--STYPRTYDLLHADHL 714 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~----~vwvmnv~p~~~~~~l~----~i~eR-Glig~~~~~ce~f--~typrtyDl~Ha~~~ 714 (796)
.|||+|||.|++..+|.+. .|+.+-+-| .-|. .+-+| ++..+.+|-..+. ...+.+||+|=.+
T Consensus 75 ~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~----~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d-- 148 (226)
T PRK04266 75 KVLYLGAASGTTVSHVSDIVEEGVVYAVEFAP----RPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQD-- 148 (226)
T ss_pred EEEEEccCCCHHHHHHHHhcCCCeEEEEECCH----HHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEEC--
Confidence 5999999999999888764 244432222 1122 22222 3445555655432 1224568875311
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEE
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIV 743 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~ 743 (796)
....=....+|-++-|+|||||+++|
T Consensus 149 ---~~~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 149 ---VAQPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred ---CCChhHHHHHHHHHHHhcCCCcEEEE
Confidence 11000112346799999999999999
No 280
>PRK06922 hypothetical protein; Provisional
Probab=96.26 E-value=0.0014 Score=78.00 Aligned_cols=103 Identities=14% Similarity=0.266 Sum_probs=61.2
Q ss_pred ccccccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhh----cc-cccc-cccccccC--CCCccccccc
Q 003776 641 WSTVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYER----GL-FGIY-HDWCESFS--TYPRTYDLLH 710 (796)
Q Consensus 641 w~~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig~~-~~~ce~f~--typrtyDl~H 710 (796)
|..-.+|||+|||.|.++.+|... |- .+|+-.|-. ..|..+-.| |. +-++ .| +..++ .-|.+||+|.
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~--~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gD-a~dLp~~fedeSFDvVV 492 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETED--KRIYGIDISENVIDTLKKKKQNEGRSWNVIKGD-AINLSSSFEKESVDTIV 492 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcc-hHhCccccCCCCEEEEE
Confidence 334467999999999988776532 21 133333333 334333332 21 1111 12 22344 1258999999
Q ss_pred cccccccccC----------CcchHHHHHhhcccccCCcEEEEecc
Q 003776 711 ADHLFSKIKK----------RCNLVAVVAEVDRILRPEGKLIVRDD 746 (796)
Q Consensus 711 a~~~~s~~~~----------rC~~~~~l~E~DRiLRP~G~~i~rd~ 746 (796)
+..++-.+.+ .-.+..+|-++-|+|+|||.++|.|.
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 7765543321 22456789999999999999999863
No 281
>PRK14967 putative methyltransferase; Provisional
Probab=96.24 E-value=0.0036 Score=65.19 Aligned_cols=118 Identities=16% Similarity=0.266 Sum_probs=66.1
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHh----hcc--cccccccccccCCCCcccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYE----RGL--FGIYHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGl--ig~~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
-.|||+|||.|.++..|...+. -.|+-+|-. ..+..+-+ .|+ .-+..|+...++ +..||+|.++--|..
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE--FRPFDVVVSNPPYVP 113 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc--CCCeeEEEECCCCCC
Confidence 3699999999999887766432 123333332 33332222 232 122345555443 368999997643321
Q ss_pred cc------------------CCcchHHHHHhhcccccCCcEEEEe-ccHHHHHHHHHHHhcCCceEEE
Q 003776 718 IK------------------KRCNLVAVVAEVDRILRPEGKLIVR-DDVETINELESMVKGMQWEVRM 766 (796)
Q Consensus 718 ~~------------------~rC~~~~~l~E~DRiLRP~G~~i~r-d~~~~~~~~~~~~~~l~W~~~~ 766 (796)
-. ..+.+..++-++-|+|+|||.+++- .....+..+..+++.-.|.+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 181 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEV 181 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEE
Confidence 10 1123456777899999999999973 2222233444555555555443
No 282
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=96.22 E-value=0.0017 Score=69.74 Aligned_cols=52 Identities=13% Similarity=0.247 Sum_probs=36.3
Q ss_pred cccccccCCCCccccccccccccccccCCcchHHHHHhhcccccCCcEEEEecc
Q 003776 693 HDWCESFSTYPRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDD 746 (796)
Q Consensus 693 ~~~ce~f~typrtyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~ 746 (796)
||.....+ .+..||+|.|..+|..+. .=....+|-++-|+|+|||+++|...
T Consensus 192 ~dl~~~~~-~~~~fD~I~crnvl~yf~-~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 192 HNLLAESP-PLGDFDLIFCRNVLIYFD-EPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred ccCCCCCC-ccCCCCEEEechhHHhCC-HHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 45444322 247899999777765442 22234689999999999999999753
No 283
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.22 E-value=0.023 Score=61.05 Aligned_cols=69 Identities=25% Similarity=0.323 Sum_probs=52.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC----eEEEEcCCCCCCCCCCceeEEEEcC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP----AISAVMGTERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~----~~~~v~d~e~LPfpd~SFDlVvss~ 461 (796)
+++..||++|.|||.++..|+++ .|+++++++.|+.+-+.+. .|.+ .....+|....++| .||.++++.
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv---~gtp~~~kLqV~~gD~lK~d~P--~fd~cVsNl 131 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRV---QGTPKSGKLQVLHGDFLKTDLP--RFDGCVSNL 131 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHh---cCCCccceeeEEecccccCCCc--ccceeeccC
Confidence 57889999999999999999885 8999999999987665332 2333 34555666555554 599999974
No 284
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.18 E-value=0.011 Score=64.68 Aligned_cols=72 Identities=10% Similarity=0.009 Sum_probs=47.1
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC--CCC--CceeEEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP--FPG--IVFDAVHC 459 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP--fpd--~SFDlVvs 459 (796)
++..+||.+||.|.++..|+++ .|+|+|.++.++..++..... .-.+.++..+...+. .+. .+||+|++
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~ 96 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGLGKVDGILL 96 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCCCccCEEEE
Confidence 4679999999999999999875 599999999998887644322 222344444433221 111 15666666
Q ss_pred cCC
Q 003776 460 ARC 462 (796)
Q Consensus 460 s~~ 462 (796)
.+.
T Consensus 97 DLG 99 (296)
T PRK00050 97 DLG 99 (296)
T ss_pred CCC
Confidence 543
No 285
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.15 E-value=0.034 Score=62.45 Aligned_cols=109 Identities=20% Similarity=0.290 Sum_probs=73.1
Q ss_pred CCCCCEEEEECCCCchhHHHHhhC------CeEEEeCChhhHHHHHHHHHHHcCCCe-EEEEcCCCCCC---CCCCceeE
Q 003776 387 GKRTRVVLDVGCGVASFGGFLFDR------GVLTMSFAPKDEHEAQVQFALERGIPA-ISAVMGTERLP---FPGIVFDA 456 (796)
Q Consensus 387 ~~~~~~VLDIGCGtG~~a~~La~~------~V~gvDiSp~dl~~A~~q~A~ergl~~-~~~v~d~e~LP---fpd~SFDl 456 (796)
..++.+|||+-++.|.=+.+|+.. .|+++|+++.-+.... ....+.|+.. .....|...++ .....||.
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~-~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLR-ENLKRLGVRNVIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHH-HHHHHcCCCceEEEecccccccccccccCcCcE
Confidence 356899999999999877777664 2699999997665554 5555667764 45555655443 22235999
Q ss_pred EEE----c-CCCcc------cccch----------HHHHHHHHhhcCCCcEEEEEeCCCCC
Q 003776 457 VHC----A-RCRVP------WHIEG----------GKLLLELNRVLRPGGFFIWSATPVYQ 496 (796)
Q Consensus 457 Vvs----s-~~~l~------w~~d~----------~~~L~Ei~RVLKPGG~fv~s~~~~~~ 496 (796)
|+. + ...+. |...+ ..+|....++|||||.|+.++.....
T Consensus 233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 995 2 12122 22211 26788899999999999998764433
No 286
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.15 E-value=0.054 Score=56.92 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=70.6
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER 446 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~ 446 (796)
+....|..-+..+. .+++.+||-||..+|+...++..- .|.++++|+.... ..+..|.+|. ++.-+..|+.
T Consensus 57 KLaAai~~Gl~~~~-ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~r-dL~~la~~R~-NIiPIl~DAr- 132 (229)
T PF01269_consen 57 KLAAAILKGLENIP-IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMR-DLLNLAKKRP-NIIPILEDAR- 132 (229)
T ss_dssp HHHHHHHTT-S--S---TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHH-HHHHHHHHST-TEEEEES-TT-
T ss_pred HHHHHHHcCccccC-CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHH-HHHHHhccCC-ceeeeeccCC-
Confidence 34444544443222 256889999999999888888752 6999999996543 3346666663 3444555542
Q ss_pred CC----CCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 447 LP----FPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 447 LP----fpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.| .--..+|+|++-- ........++..+...||+||.|+++.
T Consensus 133 ~P~~Y~~lv~~VDvI~~DV---aQp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 133 HPEKYRMLVEMVDVIFQDV---AQPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp SGGGGTTTS--EEEEEEE----SSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ChHHhhcccccccEEEecC---CChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 22 1124899999964 323345677788999999999999873
No 287
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.11 E-value=0.017 Score=65.21 Aligned_cols=96 Identities=8% Similarity=0.005 Sum_probs=70.1
Q ss_pred CEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCC-CCCCCceeEEEEcCCC
Q 003776 391 RVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERL-PFPGIVFDAVHCARCR 463 (796)
Q Consensus 391 ~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~L-Pfpd~SFDlVvss~~~ 463 (796)
-+|||+.||+|..+..++.+ .|+++|+++..+...+ +.++..++. +.+...|+..+ ......||+|+.-.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~-~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIK-NNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--
Confidence 58999999999999988764 5999999998776665 444444544 44555554332 22235799999854
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 464 VPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 464 l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
. -.+..+|..+.+.+++||+++++.+
T Consensus 123 f---Gs~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 123 F---GTPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred C---CCcHHHHHHHHHhcccCCEEEEEec
Confidence 2 2446899999999999999999855
No 288
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.11 E-value=0.0014 Score=67.44 Aligned_cols=90 Identities=17% Similarity=0.255 Sum_probs=51.3
Q ss_pred ccccccCccccceeeeccCC-----CeEEEEeecCCCCCChhHHHhhcccc---cc-cccccccCCCCcccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-----SVWVMNVISIDSPDTLPIIYERGLFG---IY-HDWCESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-----~vwvmnv~p~~~~~~l~~i~eRGlig---~~-~~~ce~f~typrtyDl~Ha~~~~ 715 (796)
..|||+|||+|.+++.|... .|+.+-+.|.-....-..+...|+.. ++ +|..+.++. ...||.|++...+
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~~ 152 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIVTAAA 152 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-CCCccEEEEccCc
Confidence 35999999999998776532 24433333221110111223345422 22 344444443 3689999976554
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
. .+.=++-|+|+|||.+++-
T Consensus 153 ~---------~~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 153 S---------TIPSALVRQLKDGGVLVIP 172 (205)
T ss_pred c---------hhhHHHHHhcCcCcEEEEE
Confidence 2 2223566999999999984
No 289
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=96.11 E-value=0.0076 Score=65.26 Aligned_cols=132 Identities=17% Similarity=0.221 Sum_probs=79.5
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhh----cc---c-ccccccccccCCCCccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYER----GL---F-GIYHDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gl---i-g~~~~~ce~f~typrtyDl~Ha~~~ 714 (796)
..|||+|||.|.++.+|... +-+ .|+-+|.. ..+.++-+. |+ + =+.+||.++++. ..||+|-++-=
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~--~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNA--EVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAG--QKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcC--CCccEEEECCC
Confidence 36999999999999888753 311 33334443 344433332 33 2 233677776642 37999876411
Q ss_pred ccc------------ccCC-c---------chHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHh-cCCceE-EE-eec
Q 003776 715 FSK------------IKKR-C---------NLVAVVAEVDRILRPEGKLIVRDDVETINELESMVK-GMQWEV-RM-TYS 769 (796)
Q Consensus 715 ~s~------------~~~r-C---------~~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~-~l~W~~-~~-~~~ 769 (796)
+.. +..+ + .+..|+-+.-++|+|||++++--.......+..+.. ...|.. .. .|-
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~~D~ 271 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGRDL 271 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEecCC
Confidence 100 0111 1 234678889999999999999755555566777765 456643 22 245
Q ss_pred cCCceEEEEEe
Q 003776 770 KDKEGLLCVEK 780 (796)
Q Consensus 770 ~~~e~~l~~~K 780 (796)
.+.++++++++
T Consensus 272 ~g~~R~~~~~~ 282 (284)
T TIGR00536 272 NGKERVVLGFY 282 (284)
T ss_pred CCCceEEEEEe
Confidence 56788888765
No 290
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.11 E-value=0.032 Score=62.13 Aligned_cols=113 Identities=15% Similarity=0.106 Sum_probs=81.2
Q ss_pred ccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC--eEEE
Q 003776 366 FKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP--AISA 440 (796)
Q Consensus 366 F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~ 440 (796)
|..+...--..+.+.+. .+.+|||+=||.|.|+..++.. .|+++|++|..+...+ +.++..++. +..+
T Consensus 171 Fsprl~~ER~Rva~~v~------~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~-eNi~LN~v~~~v~~i 243 (341)
T COG2520 171 FSPRLSTERARVAELVK------EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLK-ENIRLNKVEGRVEPI 243 (341)
T ss_pred ECCCchHHHHHHHhhhc------CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHH-HHHHhcCccceeeEE
Confidence 44433333344555543 3889999999999999998874 4999999997776655 455555554 3466
Q ss_pred EcCCCCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 441 VMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 441 v~d~e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.+|...++..-+.||-|++.+ .. ....++....+.|++||.+.+-
T Consensus 244 ~gD~rev~~~~~~aDrIim~~--p~---~a~~fl~~A~~~~k~~g~iHyy 288 (341)
T COG2520 244 LGDAREVAPELGVADRIIMGL--PK---SAHEFLPLALELLKDGGIIHYY 288 (341)
T ss_pred eccHHHhhhccccCCEEEeCC--CC---cchhhHHHHHHHhhcCcEEEEE
Confidence 777766665558899999976 22 3457888889999999998876
No 291
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=96.06 E-value=0.0024 Score=69.60 Aligned_cols=102 Identities=16% Similarity=0.275 Sum_probs=60.7
Q ss_pred cccccccccccCccccceeeeccCC-CeEEEEeecCCCCCChhH----HHhhccccccccccccc--CCCCccccccccc
Q 003776 640 NWSTVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSPDTLPI----IYERGLFGIYHDWCESF--STYPRTYDLLHAD 712 (796)
Q Consensus 640 ~w~~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~~~l~~----i~eRGlig~~~~~ce~f--~typrtyDl~Ha~ 712 (796)
..+..+.|||+|||.|.++.++..+ |-. +++-.|-+..+.. +-+.|+-+-++-.+--| ..+| .+|++-..
T Consensus 146 ~~~~~~~vlDiG~G~G~~~~~~~~~~p~~--~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~ 222 (306)
T TIGR02716 146 KLDGVKKMIDVGGGIGDISAAMLKHFPEL--DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFC 222 (306)
T ss_pred CCCCCCEEEEeCCchhHHHHHHHHHCCCC--EEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeE
Confidence 3466789999999999999888654 321 2233333333433 33446533222222222 1234 36887655
Q ss_pred cccccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 713 HLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 713 ~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
+++-.|... ....+|-++-|.|+|||.++|-|
T Consensus 223 ~~lh~~~~~-~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 223 RILYSANEQ-LSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred hhhhcCChH-HHHHHHHHHHHhcCCCCEEEEEE
Confidence 555444321 23457889999999999999864
No 292
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.05 E-value=0.035 Score=61.71 Aligned_cols=173 Identities=19% Similarity=0.189 Sum_probs=101.1
Q ss_pred cCCCCccccccH-HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHc
Q 003776 359 FPGGGTQFKNGA-LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALER 433 (796)
Q Consensus 359 Fpgggt~F~~~a-~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~er 433 (796)
|-.|+-+|...- .+|.+.+ ..|.+...+..++||-+|.|.|.-++.|.+. +|+-+|++|.|+.-+....+...
T Consensus 260 YldG~LQfsTrDe~RYhEsL--V~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~ 337 (508)
T COG4262 260 YLDGGLQFSTRDEYRYHESL--VYPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRA 337 (508)
T ss_pred EEcCceeeeechhhhhhhee--eecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhh
Confidence 445556665532 2333332 1232222345789999999999999999875 79999999999987764333221
Q ss_pred ---C----CCeEEEEcCCC-CCCCCCCceeEEEEcCCCccccc-----chHHHHHHHHhhcCCCcEEEEEeCCCCCCchH
Q 003776 434 ---G----IPAISAVMGTE-RLPFPGIVFDAVHCARCRVPWHI-----EGGKLLLELNRVLRPGGFFIWSATPVYQKLPE 500 (796)
Q Consensus 434 ---g----l~~~~~v~d~e-~LPfpd~SFDlVvss~~~l~w~~-----d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~E 500 (796)
| ..+..+..|+. -+--..+.||+|+--+. -+-.+ .-..+..-+.|.|+++|++++.....|-+..-
T Consensus 338 ~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~-DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~v 416 (508)
T COG4262 338 LNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLP-DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRV 416 (508)
T ss_pred hccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCC-CCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCce
Confidence 1 12333334432 22233468999998541 11111 11366777889999999999876554443221
Q ss_pred HHHHHHHHHHHHH---hhcceeehhhhhhccceeEEEEEecC
Q 003776 501 DVEIWNAMSQLIK---AMCWELVSISKDTINKVGIAVYRKPT 539 (796)
Q Consensus 501 l~~~~~~le~l~~---~~~W~~v~~~~~~l~dvG~~L~rkgf 539 (796)
.|. +....+ -..|+...... +..++||.+..++-
T Consensus 417 ---fw~-i~aTik~AG~~~~Pyhv~VP-TFGeWGf~l~~~~~ 453 (508)
T COG4262 417 ---FWR-IDATIKSAGYRVWPYHVHVP-TFGEWGFILAAPGD 453 (508)
T ss_pred ---eee-ehhHHHhCcceeeeeEEecC-cccccceeeccccc
Confidence 122 222222 22355444433 78899998877543
No 293
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=96.04 E-value=0.0025 Score=71.01 Aligned_cols=115 Identities=16% Similarity=0.061 Sum_probs=68.4
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhhcc---cccc-cccccccCCCCccccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYERGL---FGIY-HDWCESFSTYPRTYDLLHADHLFSKI 718 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eRGl---ig~~-~~~ce~f~typrtyDl~Ha~~~~s~~ 718 (796)
..|||+|||.|.++..|... +- -+|+-+|.. ..+..+-++.- +-++ .|. +.++..+.+||+|-+.+.|..+
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~-e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDA-EDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccH-HhCCCCCCceeEEEEcChhhhC
Confidence 46999999999987766442 11 123333332 44444444320 1122 222 2334335799999877766554
Q ss_pred cCCcchHHHHHhhcccccCCcEEEEeccH-----------------HHHHHHHHHHhcCCceEE
Q 003776 719 KKRCNLVAVVAEVDRILRPEGKLIVRDDV-----------------ETINELESMVKGMQWEVR 765 (796)
Q Consensus 719 ~~rC~~~~~l~E~DRiLRP~G~~i~rd~~-----------------~~~~~~~~~~~~l~W~~~ 765 (796)
.+ ...+|-|+-|+|+|||.++|.+.. ...+++..+++..-++..
T Consensus 192 ~d---~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V 252 (340)
T PLN02490 192 PD---PQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDV 252 (340)
T ss_pred CC---HHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEE
Confidence 43 356799999999999999875321 023555666666666643
No 294
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=96.02 E-value=0.0042 Score=66.26 Aligned_cols=125 Identities=18% Similarity=0.166 Sum_probs=73.7
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHh----hcccccccccccccCC-CCcccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYE----RGLFGIYHDWCESFST-YPRTYDLLHADHLFSK 717 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGlig~~~~~ce~f~t-yprtyDl~Ha~~~~s~ 717 (796)
..|+|+|||+|.|+-+|... +- ..|+-+|.. ..+..+-+ .|+--+-.|+.+.++. +...||+|=++--+..
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~--~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDG--IELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 36999999999999877532 21 122333332 33332221 1321133455444431 2346898876643321
Q ss_pred c-------------cCCcc----------hHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCCceEEEeeccC
Q 003776 718 I-------------KKRCN----------LVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWEVRMTYSKD 771 (796)
Q Consensus 718 ~-------------~~rC~----------~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W~~~~~~~~~ 771 (796)
. ..++. +..|+-...++|+|||.+++--..+....+..+++...|...+..|++
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~ 242 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEE 242 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEccc
Confidence 1 11111 247778889999999999986555556778888887778777765444
No 295
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=96.00 E-value=0.0043 Score=70.17 Aligned_cols=115 Identities=17% Similarity=0.091 Sum_probs=68.7
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCC-----CChhHHHhhcc---cccccccc---cccCCCCccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-----DTLPIIYERGL---FGIYHDWC---ESFSTYPRTYDLLHAD 712 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-----~~l~~i~eRGl---ig~~~~~c---e~f~typrtyDl~Ha~ 712 (796)
..+||+|||.|.|..+|... |=+ ||+=++-. ..+.-+..+|| .-+.+|.- +.|+ +.++|.|+..
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~--~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~--~~s~D~I~ln 199 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNK--LFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLP--SNSVEKIFVH 199 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCC--CEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCC--CCceeEEEEe
Confidence 46999999999999998754 211 23333322 22234455564 12233432 3344 4799999853
Q ss_pred cccccccC---C-cchHHHHHhhcccccCCcEEEEe-ccHHHHHHHHHHH-hcCCceE
Q 003776 713 HLFSKIKK---R-CNLVAVVAEVDRILRPEGKLIVR-DDVETINELESMV-KGMQWEV 764 (796)
Q Consensus 713 ~~~s~~~~---r-C~~~~~l~E~DRiLRP~G~~i~r-d~~~~~~~~~~~~-~~l~W~~ 764 (796)
. -..|.. | =-...+|-|+=|+|+|||.+.++ |..++...+.... ..-++..
T Consensus 200 F-PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 200 F-PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred C-CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 2 134431 2 12367899999999999999996 6666666555544 3335544
No 296
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=96.00 E-value=0.0037 Score=64.47 Aligned_cols=95 Identities=20% Similarity=0.329 Sum_probs=55.0
Q ss_pred ccccccCccccceeeeccCC-C-eEEEEeecCCCC-CChhHHHhh----cc---cccc-cccccccCCCCcccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-S-VWVMNVISIDSP-DTLPIIYER----GL---FGIY-HDWCESFSTYPRTYDLLHADH 713 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~-vwvmnv~p~~~~-~~l~~i~eR----Gl---ig~~-~~~ce~f~typrtyDl~Ha~~ 713 (796)
..|||+|||.|.++..|... + . -.|+-+|.. ..+..+-++ ++ +-++ .|... ++.=+.+||+|.+.+
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKT--GEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEA-LPFPDNSFDAVTIAF 129 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccccc-CCCCCCCccEEEEec
Confidence 46999999999998776432 1 0 112222222 222222221 11 1111 22221 222146899998766
Q ss_pred ccccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 714 LFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 714 ~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
++- .......+|-.+-++|+|||++++.+
T Consensus 130 ~l~---~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 130 GLR---NVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ccc---cCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 553 33457788999999999999999753
No 297
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=95.97 E-value=0.039 Score=57.57 Aligned_cols=111 Identities=16% Similarity=0.290 Sum_probs=69.9
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCC--CC
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT--ER 446 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~--e~ 446 (796)
.+...+++.+. .++++||.||-|-|.....+.++ .-+.++..|.-+.+.+ ..+-... .......+. ..
T Consensus 89 piMha~A~ai~-----tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr-~~gw~ek-~nViil~g~WeDv 161 (271)
T KOG1709|consen 89 PIMHALAEAIS-----TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMR-DWGWREK-ENVIILEGRWEDV 161 (271)
T ss_pred HHHHHHHHHHh-----hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHH-hcccccc-cceEEEecchHhh
Confidence 34444444443 35899999999999998888876 4456777774432222 2221111 112222221 22
Q ss_pred C-CCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 447 L-PFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 447 L-Pfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+ .++++.||.|+--. +-....|...+...+.|+|||+|.|-+.
T Consensus 162 l~~L~d~~FDGI~yDT-y~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 162 LNTLPDKHFDGIYYDT-YSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hccccccCcceeEeec-hhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 2 26688999999753 1244457788888999999999999875
No 298
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.95 E-value=0.043 Score=61.82 Aligned_cols=100 Identities=14% Similarity=0.067 Sum_probs=74.0
Q ss_pred CCCEEEEECCCCchhHHHHhhC-------------------------------------------CeEEEeCChhhHHHH
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-------------------------------------------GVLTMSFAPKDEHEA 425 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-------------------------------------------~V~gvDiSp~dl~~A 425 (796)
++..++|-=||+|++....+-. .++|+|+++.++..|
T Consensus 191 ~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~A 270 (381)
T COG0116 191 PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGA 270 (381)
T ss_pred CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHH
Confidence 3578999999999987755432 167999999999998
Q ss_pred HHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEcCCCccccc---c---h----HHHHHHHHhhcCCCcEEEEEeC
Q 003776 426 QVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARCRVPWHI---E---G----GKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 426 ~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~---d---~----~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+ ..|+..|+. +.+.+.++..|+-+-..+|+|+|+.. |-. + . ..+...+.+.++--++++|++.
T Consensus 271 k-~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPP---YGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 271 K-ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPP---YGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred H-HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCC---cchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 7 788888887 67888888887644478999999863 322 1 1 2334456678888888888743
No 299
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.87 E-value=0.0021 Score=67.26 Aligned_cols=100 Identities=20% Similarity=0.346 Sum_probs=73.3
Q ss_pred ccccccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhcccc-cccccccccC--CCCccccccccccc
Q 003776 639 INWSTVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGLFG-IYHDWCESFS--TYPRTYDLLHADHL 714 (796)
Q Consensus 639 i~w~~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig-~~~~~ce~f~--typrtyDl~Ha~~~ 714 (796)
.+-+.+|.+||.|||+|-+|-+|+++- =-+.=+|-. |-|..+.|+|+-- +||-=-..|. .=++-||||-|..+
T Consensus 121 ~~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV 197 (287)
T COG4976 121 ADLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV 197 (287)
T ss_pred ccCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhH
Confidence 344569999999999999999998731 112223434 7888999999622 1221112243 33688999999999
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
|.-+. .++.|+.=+.+.|.|||.|+++
T Consensus 198 l~YlG---~Le~~~~~aa~~L~~gGlfaFS 224 (287)
T COG4976 198 LPYLG---ALEGLFAGAAGLLAPGGLFAFS 224 (287)
T ss_pred HHhhc---chhhHHHHHHHhcCCCceEEEE
Confidence 98765 5788899999999999999997
No 300
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=95.86 E-value=0.0025 Score=65.57 Aligned_cols=96 Identities=19% Similarity=0.252 Sum_probs=63.6
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChh-HHHhhccc--ccccccccccCCCCccccccccccccccccC
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLP-IIYERGLF--GIYHDWCESFSTYPRTYDLLHADHLFSKIKK 720 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~-~i~eRGli--g~~~~~ce~f~typrtyDl~Ha~~~~s~~~~ 720 (796)
-.|||+|||-|--|-+|..+..=|.-|=..... ..+. ++-.+||- ....|.. .+. +|..||+|.+..+| .+.+
T Consensus 32 g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~-~~~-~~~~yD~I~st~v~-~fL~ 108 (192)
T PF03848_consen 32 GKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLN-DFD-FPEEYDFIVSTVVF-MFLQ 108 (192)
T ss_dssp SEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGC-CBS--TTTEEEEEEESSG-GGS-
T ss_pred CcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecch-hcc-ccCCcCEEEEEEEe-ccCC
Confidence 469999999999999998887655544333333 3333 45556763 2233332 232 46899999876666 4555
Q ss_pred CcchHHHHHhhcccccCCcEEEE
Q 003776 721 RCNLVAVVAEVDRILRPEGKLIV 743 (796)
Q Consensus 721 rC~~~~~l~E~DRiLRP~G~~i~ 743 (796)
|-.+..|+--|-.-|+||||+++
T Consensus 109 ~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 109 RELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhcCCcEEEEE
Confidence 66788899999999999999888
No 301
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.84 E-value=0.014 Score=65.29 Aligned_cols=53 Identities=25% Similarity=0.259 Sum_probs=38.7
Q ss_pred CEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCe-EEEEcCC
Q 003776 391 RVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPA-ISAVMGT 444 (796)
Q Consensus 391 ~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~-~~~v~d~ 444 (796)
..|||+=||+|.|+..|+.. .|+|+++.+.++..|+ +.|...++.. .+...++
T Consensus 198 ~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~-~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDAR-ENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHH-HHHHHTT--SEEEEE--S
T ss_pred CcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHH-HHHHHcCCCcceEEEeec
Confidence 38999999999999999985 8999999999988887 6666677654 4444433
No 302
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.84 E-value=0.0075 Score=66.31 Aligned_cols=128 Identities=20% Similarity=0.326 Sum_probs=72.9
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHH----hhcc---cc-cccccccccCCCCccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIY----ERGL---FG-IYHDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~----eRGl---ig-~~~~~ce~f~typrtyDl~Ha~~~ 714 (796)
..|||+|||.|.++.+|... |- ..|+-+|-. ..+.++- ..|+ |- +..|+.+.++ +.+||+|-++-=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~--~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD--AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECCC
Confidence 46999999999999988654 32 234444543 4444332 2343 22 2335545444 368999987621
Q ss_pred ccc------------ccCC---------c-chHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhc--CCceEEEeecc
Q 003776 715 FSK------------IKKR---------C-NLVAVVAEVDRILRPEGKLIVRDDVETINELESMVKG--MQWEVRMTYSK 770 (796)
Q Consensus 715 ~s~------------~~~r---------C-~~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~--l~W~~~~~~~~ 770 (796)
+.. +... . .+..|+-+.-++|+|||++++--... ...+..+... +.|- ..+.
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~~~~~~---~~~~ 286 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDVPFTWL---EFEN 286 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhCCCEEE---EecC
Confidence 111 0000 0 12467889999999999999853322 3456666644 4562 2233
Q ss_pred CCceEEEEEe
Q 003776 771 DKEGLLCVEK 780 (796)
Q Consensus 771 ~~e~~l~~~K 780 (796)
....+++..+
T Consensus 287 ~~~~~~~~~~ 296 (307)
T PRK11805 287 GGDGVFLLTR 296 (307)
T ss_pred CCceEEEEEH
Confidence 4455555553
No 303
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=95.77 E-value=0.0024 Score=66.13 Aligned_cols=86 Identities=19% Similarity=0.205 Sum_probs=50.5
Q ss_pred ccccccCccccceeeeccCC--C---eEEEEeecCCCCCChhH----HHhhcc---cccccccccccCCCCccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI--S---VWVMNVISIDSPDTLPI----IYERGL---FGIYHDWCESFSTYPRTYDLLHAD 712 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~--~---vwvmnv~p~~~~~~l~~----i~eRGl---ig~~~~~ce~f~typrtyDl~Ha~ 712 (796)
..|||+|||+|.+++.|... + |+.+-+.| ..+.. +-+.|+ .-+.+|..+.++. ...||+|+.+
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~----~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~-~~~fD~Ii~~ 153 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIP----ELAEKAERRLRKLGLDNVIVIVGDGTQGWEP-LAPYDRIYVT 153 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCH----HHHHHHHHHHHHCCCCCeEEEECCcccCCcc-cCCCCEEEEc
Confidence 36999999999999988654 2 43332222 22222 222343 1223354444333 2579999965
Q ss_pred cccccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 713 HLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 713 ~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
... ..+.-.+-|.|+|||++|+-
T Consensus 154 ~~~---------~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 154 AAG---------PKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred CCc---------ccccHHHHHhcCcCcEEEEE
Confidence 432 22334556789999999974
No 304
>PRK07402 precorrin-6B methylase; Provisional
Probab=95.77 E-value=0.01 Score=60.43 Aligned_cols=107 Identities=12% Similarity=0.177 Sum_probs=55.4
Q ss_pred ccccccCccccceeeeccCC--CeEEEEeecCCCCCChhHHH----hhcc--cccc-cccccccCCCCcccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSPDTLPIIY----ERGL--FGIY-HDWCESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~~~l~~i~----eRGl--ig~~-~~~ce~f~typrtyDl~Ha~~~~ 715 (796)
..|||+|||+|.++..+... ..-|.-|=+. +..+..+- ..|+ |=++ .|..+.++..+-.+|.++.+
T Consensus 42 ~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s--~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~--- 116 (196)
T PRK07402 42 SVLWDIGAGTGTIPVEAGLLCPKGRVIAIERD--EEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE--- 116 (196)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE---
Confidence 46999999999998766421 2222222221 12222221 2233 1111 11111111111124554422
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEEEecc-HHHHHHHHHHHhcC
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLIVRDD-VETINELESMVKGM 760 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~-~~~~~~~~~~~~~l 760 (796)
....+..+|-++-|+|+|||++++-.. .+.+..+.+..+.+
T Consensus 117 ----~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~ 158 (196)
T PRK07402 117 ----GGRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQL 158 (196)
T ss_pred ----CCcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhc
Confidence 123567889999999999999998643 33445555556544
No 305
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=95.75 E-value=0.22 Score=53.74 Aligned_cols=106 Identities=21% Similarity=0.204 Sum_probs=71.8
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCC
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTER 446 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~ 446 (796)
+.+|..+|.. .++.+||+-|.|+|+++.+|++. ++...|+...-...|...+ ++.|+. +.+.+.|...
T Consensus 94 ia~I~~~L~i----~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeF-r~hgi~~~vt~~hrDVc~ 168 (314)
T KOG2915|consen 94 IAMILSMLEI----RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEF-REHGIGDNVTVTHRDVCG 168 (314)
T ss_pred HHHHHHHhcC----CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHH-HHhCCCcceEEEEeeccc
Confidence 3455666553 56899999999999999999875 7899999664444444333 234443 4555566555
Q ss_pred CCC--CCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 447 LPF--PGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 447 LPf--pd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
..| .+..+|+|+.-. +.|..++--++.+||-+|.-+.+
T Consensus 169 ~GF~~ks~~aDaVFLDl------PaPw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 169 SGFLIKSLKADAVFLDL------PAPWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred CCccccccccceEEEcC------CChhhhhhhhHHHhhhcCceEEe
Confidence 444 367899999864 24556777777899988744434
No 306
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=95.74 E-value=0.0089 Score=64.95 Aligned_cols=115 Identities=21% Similarity=0.298 Sum_probs=66.7
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHh----hcc---cc-cccccccccCCCCccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYE----RGL---FG-IYHDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGl---ig-~~~~~ce~f~typrtyDl~Ha~~~ 714 (796)
..|||+|||.|.++.+|... +-+ .|+-+|-. ..|.++-+ .|+ |- +..|+-+.++ +..||+|-++-=
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~--~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--~~~fD~Iv~NPP 198 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEA--EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--GRKYDLIVSNPP 198 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--CCCccEEEECCC
Confidence 46999999999999998754 211 33334443 33433322 354 22 2344444443 357999887521
Q ss_pred cccc------------cC---------Ccc-hHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCCceE
Q 003776 715 FSKI------------KK---------RCN-LVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWEV 764 (796)
Q Consensus 715 ~s~~------------~~---------rC~-~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W~~ 764 (796)
+... .. ... +..++-++-++|+|||++++--... +..++.+.....|..
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~-~~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNS-MEALEEAYPDVPFTW 269 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHHhCCCce
Confidence 1110 00 011 2467888999999999999864332 257777776554433
No 307
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=95.67 E-value=0.0045 Score=67.11 Aligned_cols=94 Identities=21% Similarity=0.326 Sum_probs=69.8
Q ss_pred cccccCccccceeeeccCC-CeEEEEeecCCCC-CChh-HHHhhccc----ccccccccccCCCCccccccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLP-IIYERGLF----GIYHDWCESFSTYPRTYDLLHADHLFSKI 718 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~-~i~eRGli----g~~~~~ce~f~typrtyDl~Ha~~~~s~~ 718 (796)
+|||+|||-|+++-++..+ +|-|+.|.-..+. ...+ .|.+|||- =.++||...=. .||=|=+-+.|-..
T Consensus 75 ~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e----~fDrIvSvgmfEhv 150 (283)
T COG2230 75 TLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEE----PFDRIVSVGMFEHV 150 (283)
T ss_pred EEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccc----ccceeeehhhHHHh
Confidence 5999999999999888766 7888887766554 3333 48889986 45777754433 37777777777654
Q ss_pred cCCcchHHHHHhhcccccCCcEEEEe
Q 003776 719 KKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 719 ~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
.. -...+++-=+.++|+|||.+++-
T Consensus 151 g~-~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 151 GK-ENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred Cc-ccHHHHHHHHHhhcCCCceEEEE
Confidence 32 35678888899999999999974
No 308
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=95.66 E-value=0.015 Score=66.47 Aligned_cols=134 Identities=10% Similarity=0.047 Sum_probs=79.6
Q ss_pred cccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHh----hcc--cccccccccccCCCCcccccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYE----RGL--FGIYHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGl--ig~~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
+|||+|||.|.++.+|... +-. +|+-+|.. ..+.++-+ .|+ .=+..||.+....-...||+|-++-=+..
T Consensus 254 rVLDLGcGSG~IaiaLA~~~p~a--~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALERPDA--FVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred EEEEEeChhhHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 6999999999999877542 321 23333332 34433322 232 22334554431111246999887553321
Q ss_pred ccC-------------------Ccc---hHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCCceEE--EeeccCCc
Q 003776 718 IKK-------------------RCN---LVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWEVR--MTYSKDKE 773 (796)
Q Consensus 718 ~~~-------------------rC~---~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W~~~--~~~~~~~e 773 (796)
... .-. +..|+-+.-+.|+|||++++--..+-...++++++...|... ..|-.+.+
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~d 411 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLAGLD 411 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEcCCCCc
Confidence 110 011 235666778899999999986555556788888887777643 33566788
Q ss_pred eEEEEEec
Q 003776 774 GLLCVEKS 781 (796)
Q Consensus 774 ~~l~~~K~ 781 (796)
+++++++.
T Consensus 412 R~v~~~~~ 419 (423)
T PRK14966 412 RVTLGKYM 419 (423)
T ss_pred EEEEEEEh
Confidence 99988753
No 309
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=95.60 E-value=0.059 Score=58.96 Aligned_cols=122 Identities=15% Similarity=0.082 Sum_probs=73.4
Q ss_pred HHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHc----C-CCeE-EE---
Q 003776 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALER----G-IPAI-SA--- 440 (796)
Q Consensus 372 ~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~er----g-l~~~-~~--- 440 (796)
..++.|..++|.-...+...+||--|||.|+++..|+.. .+.|=++|--|+--. .++... + +.+. ++
T Consensus 133 pii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S--~FiLN~~~~~nq~~IYPfIh~~ 210 (369)
T KOG2798|consen 133 PIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICS--SFILNYCKQENQFTIYPFIHQY 210 (369)
T ss_pred hHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHH--HHHHHhhccCCcEEEEeeeecc
Confidence 446677777775333344668999999999999999875 455556666665433 232211 0 0000 00
Q ss_pred --------------------------------E-cCC-CCC--CCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCC
Q 003776 441 --------------------------------V-MGT-ERL--PFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPG 484 (796)
Q Consensus 441 --------------------------------v-~d~-e~L--Pfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPG 484 (796)
. +|. +-. +-..++||+|+..+ ++.-..+.-.+|..|..+||||
T Consensus 211 sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcf-FIDTa~NileYi~tI~~iLk~G 289 (369)
T KOG2798|consen 211 SNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCF-FIDTAHNILEYIDTIYKILKPG 289 (369)
T ss_pred ccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEE-EeechHHHHHHHHHHHHhccCC
Confidence 0 000 000 01124699999765 2433347789999999999999
Q ss_pred cEEEEEeCCCCC
Q 003776 485 GFFIWSATPVYQ 496 (796)
Q Consensus 485 G~fv~s~~~~~~ 496 (796)
|+++=..|..|.
T Consensus 290 GvWiNlGPLlYH 301 (369)
T KOG2798|consen 290 GVWINLGPLLYH 301 (369)
T ss_pred cEEEeccceeee
Confidence 999955555554
No 310
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=95.57 E-value=0.0057 Score=56.32 Aligned_cols=90 Identities=17% Similarity=0.173 Sum_probs=52.3
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhH----HHhhccccc---ccc--cccccCCCCcccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPI----IYERGLFGI---YHD--WCESFSTYPRTYDLLHADH 713 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~----i~eRGlig~---~~~--~ce~f~typrtyDl~Ha~~ 713 (796)
..|||+|||.|.++.+|... |- ..|+.+|-. ..+.. +...|+-.+ ..+ |+.+ ..+.+||.|=...
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~D~v~~~~ 96 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPN--GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE--DSLPEPDRVFIGG 96 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCC--ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh--hhcCCCCEEEECC
Confidence 47999999999999888764 21 233333332 22322 122232111 112 2222 2235788875433
Q ss_pred ccccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 714 LFSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 714 ~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
.+. .+..++-++-|+|+|||++|+.
T Consensus 97 ~~~------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 97 SGG------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred cch------hHHHHHHHHHHHcCCCCEEEEE
Confidence 221 2457899999999999999974
No 311
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.53 E-value=0.0039 Score=64.73 Aligned_cols=86 Identities=16% Similarity=0.171 Sum_probs=47.0
Q ss_pred ccccccCccccceeeeccCC-----CeEEEEeecCCCCCChhHHHh----hcccc---cccccccccCCCCccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-----SVWVMNVISIDSPDTLPIIYE----RGLFG---IYHDWCESFSTYPRTYDLLHAD 712 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-----~vwvmnv~p~~~~~~l~~i~e----RGlig---~~~~~ce~f~typrtyDl~Ha~ 712 (796)
..|||+|||+|.+++.|... .|+.+-+.| ..+.++-+ -|+-. +..|-.+.++. ...||+|++.
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~----~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~-~~~fD~I~~~ 152 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIP----ELAEKAKKTLKKLGYDNVEVIVGDGTLGYEE-NAPYDRIYVT 152 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCH----HHHHHHHHHHHHcCCCCeEEEECCcccCCCc-CCCcCEEEEC
Confidence 47999999999999776542 334333322 22222211 13211 11122222221 2679999865
Q ss_pred cccccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 713 HLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 713 ~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
..+ ..+.-.+-+.|+|||.+|+-
T Consensus 153 ~~~---------~~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 153 AAG---------PDIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred CCc---------ccchHHHHHhhCCCcEEEEE
Confidence 433 22333455689999999984
No 312
>PRK06202 hypothetical protein; Provisional
Probab=95.53 E-value=0.0069 Score=63.25 Aligned_cols=100 Identities=13% Similarity=0.241 Sum_probs=61.6
Q ss_pred ccccccccCccccceeeeccCC---CeEEEEeecCCCC-CChhHHHhhcc-cc--cccccccccCCCCcccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSP-DTLPIIYERGL-FG--IYHDWCESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~-~~l~~i~eRGl-ig--~~~~~ce~f~typrtyDl~Ha~~~~ 715 (796)
.-..|||+|||.|.++..|... .-.-..|+-+|.. ..+..+..+.- -+ +...-+..++.-+.+||+|-+.++|
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~l 139 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFL 139 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCee
Confidence 4467999999999988777531 0111345566655 55655555421 11 1111123444446899999998887
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
....+. .+..+|-||-|+|| |.+++.|
T Consensus 140 hh~~d~-~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 140 HHLDDA-EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred ecCChH-HHHHHHHHHHHhcC--eeEEEec
Confidence 655432 24568999999999 5666654
No 313
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=95.49 E-value=0.032 Score=56.09 Aligned_cols=69 Identities=23% Similarity=0.196 Sum_probs=45.9
Q ss_pred CEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCC----CCCCCCCceeEEEEcC
Q 003776 391 RVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTE----RLPFPGIVFDAVHCAR 461 (796)
Q Consensus 391 ~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e----~LPfpd~SFDlVvss~ 461 (796)
.+|||+.||.|..+..+++. +|+++|+++..+.-++ ..|+-.|+. +.+..+|.. .+.... .||+|+++.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~-hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~-~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAK-HNAEVYGVADNIDFICGDFFELLKRLKSNK-IFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHH-HHHHHTT-GGGEEEEES-HHHHGGGB-------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEeCCHHHHHhhccccc-cccEEEECC
Confidence 37999999999999999986 7999999998887776 667777764 566777642 222222 289999875
No 314
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=95.35 E-value=0.0063 Score=64.23 Aligned_cols=114 Identities=22% Similarity=0.169 Sum_probs=73.7
Q ss_pred cccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhcccccccccc--------cccCCCCccccccccc
Q 003776 642 STVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGLFGIYHDWC--------ESFSTYPRTYDLLHAD 712 (796)
Q Consensus 642 ~~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~~c--------e~f~typrtyDl~Ha~ 712 (796)
..-|.+.|+|||.| +||..+.- . -=+|+-+|-. .+|.++ .-+.--+||.=- .+|..=+.+.|||-|.
T Consensus 32 ~~h~~a~DvG~G~G-qa~~~iae-~-~k~VIatD~s~~mL~~a-~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNG-QAARGIAE-H-YKEVIATDVSEAMLKVA-KKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred CCcceEEEeccCCC-cchHHHHH-h-hhhheeecCCHHHHHHh-hcCCCcccccCCccccccccccccCCCcceeeehhh
Confidence 45679999999999 77776421 1 2356666665 677743 333333343322 2333336888998755
Q ss_pred cccccccCCcchHHHHHhhcccccCCcEEE----EeccHHHHHHHHHHHhcCCce
Q 003776 713 HLFSKIKKRCNLVAVVAEVDRILRPEGKLI----VRDDVETINELESMVKGMQWE 763 (796)
Q Consensus 713 ~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i----~rd~~~~~~~~~~~~~~l~W~ 763 (796)
.+| +=|.++..+-++-|||||.|-+| .+|+.-...++..+..+++|+
T Consensus 108 qa~----HWFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 108 QAV----HWFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hhH----HhhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 533 34678999999999999988322 365555666777777777776
No 315
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=95.34 E-value=0.01 Score=65.04 Aligned_cols=128 Identities=20% Similarity=0.228 Sum_probs=66.9
Q ss_pred ccccccCccccce--eeeccCC-CeEEEEeecCCCCCChhHHHhhccccccc-ccccccCCCCccccccccccccccccC
Q 003776 645 RNVMDMRSVYGGF--AAAMKDI-SVWVMNVISIDSPDTLPIIYERGLFGIYH-DWCESFSTYPRTYDLLHADHLFSKIKK 720 (796)
Q Consensus 645 RnvmDm~~g~g~f--aA~l~~~-~vwvmnv~p~~~~~~l~~i~eRGlig~~~-~~ce~f~typrtyDl~Ha~~~~s~~~~ 720 (796)
+.|||+|||+|-+ ||+++-- .|..+=+=|..-.....-+..-|+-.-+. .....++. ..||||=|+=+...
T Consensus 163 ~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~--~~~dlvvANI~~~v--- 237 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVE--GKFDLVVANILADV--- 237 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCC--S-EEEEEEES-HHH---
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEeccccc--ccCCEEEECCCHHH---
Confidence 5899999999965 4444432 45554443322222222333344322111 01222332 78999987665543
Q ss_pred CcchHHHHHhhcccccCCcEEEEeccH-HHHHHHHHHHhcCCceEEEeeccCCceEEEEEec
Q 003776 721 RCNLVAVVAEVDRILRPEGKLIVRDDV-ETINELESMVKGMQWEVRMTYSKDKEGLLCVEKS 781 (796)
Q Consensus 721 rC~~~~~l~E~DRiLRP~G~~i~rd~~-~~~~~~~~~~~~l~W~~~~~~~~~~e~~l~~~K~ 781 (796)
|..++=.+.+.|+|||++|++--. +....|.+..+. -|.+.-...++.=..|+++|+
T Consensus 238 ---L~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~~~W~~l~~~Kk 295 (295)
T PF06325_consen 238 ---LLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREEGEWVALVFKKK 295 (295)
T ss_dssp ---HHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEETTEEEEEEEE-
T ss_pred ---HHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEECCEEEEEEEeC
Confidence 345667789999999999998222 123445555555 676654433332234555553
No 316
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=95.34 E-value=0.034 Score=59.42 Aligned_cols=105 Identities=15% Similarity=0.246 Sum_probs=67.1
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCCCCChhHHHhhcccccccccccccCCCCccccccccccccccccCCcchH
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKIKKRCNLV 725 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~~~l~~i~eRGlig~~~~~ce~f~typrtyDl~Ha~~~~s~~~~rC~~~ 725 (796)
.|-|||||-|-.|.. ...+|.-|-+++.+..-+.- |+.. .|--.+|.|++- .|+|+-. -++.
T Consensus 183 vIaD~GCGEakiA~~-~~~kV~SfDL~a~~~~V~~c------------Dm~~-vPl~d~svDvaV--~CLSLMg--tn~~ 244 (325)
T KOG3045|consen 183 VIADFGCGEAKIASS-ERHKVHSFDLVAVNERVIAC------------DMRN-VPLEDESVDVAV--FCLSLMG--TNLA 244 (325)
T ss_pred EEEecccchhhhhhc-cccceeeeeeecCCCceeec------------cccC-CcCccCcccEEE--eeHhhhc--ccHH
Confidence 388999999987753 34588888888877652221 1111 233357888754 3344221 2467
Q ss_pred HHHHhhcccccCCcEEEEeccHHHHHH---HHHHHhcCCceEEEee
Q 003776 726 AVVAEVDRILRPEGKLIVRDDVETINE---LESMVKGMQWEVRMTY 768 (796)
Q Consensus 726 ~~l~E~DRiLRP~G~~i~rd~~~~~~~---~~~~~~~l~W~~~~~~ 768 (796)
+.+.|..|||+|||.|+|-+-..-... +.+-+..|-.++...+
T Consensus 245 df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 245 DFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred HHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehh
Confidence 899999999999999999644332222 3333467777776553
No 317
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=95.31 E-value=0.0066 Score=61.73 Aligned_cols=87 Identities=18% Similarity=0.251 Sum_probs=52.4
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhcccccccccccccCCC-CccccccccccccccccCCcc
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGLFGIYHDWCESFSTY-PRTYDLLHADHLFSKIKKRCN 723 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~~ce~f~ty-prtyDl~Ha~~~~s~~~~rC~ 723 (796)
+|||+|||.|.++.+|.+..-. +++-++.. ..+..+..+|+--+..|....++.+ +++||+|-+.+.|....+
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~~--~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d--- 90 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQV--RGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN--- 90 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccCC--cEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC---
Confidence 6999999999999888643211 11222322 4455555667533344444433333 479999998887765432
Q ss_pred hHHHHHhhcccccC
Q 003776 724 LVAVVAEVDRILRP 737 (796)
Q Consensus 724 ~~~~l~E~DRiLRP 737 (796)
...+|-||-|++++
T Consensus 91 ~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 91 PEEILDEMLRVGRH 104 (194)
T ss_pred HHHHHHHHHHhCCe
Confidence 45567776665554
No 318
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=95.23 E-value=0.014 Score=60.36 Aligned_cols=98 Identities=12% Similarity=0.115 Sum_probs=58.9
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----cccccccccccccCCCCccccccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GLFGIYHDWCESFSTYPRTYDLLHADHLFSKI 718 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~~ce~f~typrtyDl~Ha~~~~s~~ 718 (796)
-.+|||+|||.|.|+.+|.....- |+-+|.. +.+..+-++ |+-..++-....++..+.+||+|.+..+|..+
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~~---v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~~ 140 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGAK---VVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIHY 140 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhcC
Confidence 468999999999999988765432 3333433 444444333 22111221222244445789999988777554
Q ss_pred cCCcchHHHHHhhcccccCCcEEEEec
Q 003776 719 KKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 719 ~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
. .-.+..++-++-|++++++.+.+..
T Consensus 141 ~-~~~~~~~l~~l~~~~~~~~~i~~~~ 166 (230)
T PRK07580 141 P-QEDAARMLAHLASLTRGSLIFTFAP 166 (230)
T ss_pred C-HHHHHHHHHHHHhhcCCeEEEEECC
Confidence 3 2346677788888886666555543
No 319
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=95.11 E-value=0.01 Score=61.32 Aligned_cols=95 Identities=14% Similarity=0.204 Sum_probs=61.9
Q ss_pred ccccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhh--cccccccccccccCCCCccccccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYER--GLFGIYHDWCESFSTYPRTYDLLHADHLFSKI 718 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eR--Glig~~~~~ce~f~typrtyDl~Ha~~~~s~~ 718 (796)
....|||+|||.|-+..+|... +- ..++-+|-. ..+..+-++ ++-=+-.+..++|+ +++||+|-+.++|..+
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~--~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFK--DNFFDLVLTKGVLIHI 118 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCC--CCCEEEEEECChhhhC
Confidence 3456999999999999988764 21 133444433 455555443 11111234444444 5899999999998876
Q ss_pred cCCcchHHHHHhhcccccCCcEEEEe
Q 003776 719 KKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 719 ~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
. .=.+..+|-||-|++ ++++||.
T Consensus 119 ~-p~~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 119 N-PDNLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred C-HHHHHHHHHHHHhhc--CcEEEEE
Confidence 3 335677899999998 5788874
No 320
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=95.07 E-value=0.018 Score=57.60 Aligned_cols=112 Identities=20% Similarity=0.252 Sum_probs=65.4
Q ss_pred ccccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHH----hhcc---cccccccccccCCCCcccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIY----ERGL---FGIYHDWCESFSTYPRTYDLLHADH 713 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~----eRGl---ig~~~~~ce~f~typrtyDl~Ha~~ 713 (796)
.-.+|||+|||+|-.+.+|..+ +-.. |+-+|.. .-+..+. ..|+ --+.+|+.+.++ +..||+|=++-
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~--v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--~~~fD~Iv~NP 106 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAK--VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--DGKFDLIVSNP 106 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEE--EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC--TTCEEEEEE--
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCE--EEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc--ccceeEEEEcc
Confidence 3456999999999888888654 3322 2222332 2233221 2232 234567777666 58999987554
Q ss_pred cccccc--CCcchHHHHHhhcccccCCcEEE--EeccHHHHHHHHHHHh
Q 003776 714 LFSKIK--KRCNLVAVVAEVDRILRPEGKLI--VRDDVETINELESMVK 758 (796)
Q Consensus 714 ~~s~~~--~rC~~~~~l~E~DRiLRP~G~~i--~rd~~~~~~~~~~~~~ 758 (796)
=|..-. ....+..++-+-=|+|+|||.++ ++....+-..++++..
T Consensus 107 P~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 107 PFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp -SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred chhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 332211 12346788899999999999885 4544444444555544
No 321
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=95.03 E-value=0.015 Score=60.08 Aligned_cols=100 Identities=7% Similarity=0.103 Sum_probs=62.0
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhcc-ccc---ccccccccCCCCcccccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGL-FGI---YHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGl-ig~---~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
.-..|||+|||.|.|+.+|.+... .|+=+|.. ..+..+.+|.- -+. ..=.+..+...+.+||+|=+..++..
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIH 131 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHh
Confidence 346799999999999999987653 23334443 45555555431 010 01112222223478998876666544
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEEecc
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIVRDD 746 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~rd~ 746 (796)
+ ....+..++-++.|+++|++++.+...
T Consensus 132 ~-~~~~~~~~l~~i~~~~~~~~~i~~~~~ 159 (219)
T TIGR02021 132 Y-PASDMAKALGHLASLTKERVIFTFAPK 159 (219)
T ss_pred C-CHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 3 334567789999999999888887543
No 322
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=95.00 E-value=0.089 Score=56.78 Aligned_cols=108 Identities=18% Similarity=0.168 Sum_probs=56.1
Q ss_pred CCCEEEEECCCCc--hhHHHHhh-----CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC-------------CC
Q 003776 389 RTRVVLDVGCGVA--SFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER-------------LP 448 (796)
Q Consensus 389 ~~~~VLDIGCGtG--~~a~~La~-----~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~-------------LP 448 (796)
..+..||||||-- .....+++ .+|+-+|.+|.-+..++.-++....-...+..+|..+ |.
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 5789999999954 23334433 3899999999776665533332221114555665422 12
Q ss_pred CCCCceeEEEEcCCCccccc---chHHHHHHHHhhcCCCcEEEEEeCCCCCCchH
Q 003776 449 FPGIVFDAVHCARCRVPWHI---EGGKLLLELNRVLRPGGFFIWSATPVYQKLPE 500 (796)
Q Consensus 449 fpd~SFDlVvss~~~l~w~~---d~~~~L~Ei~RVLKPGG~fv~s~~~~~~~l~E 500 (796)
| +..+=+++.. .+||.. ++..++..++..|.||.+|+++. ...+..++
T Consensus 148 ~-~rPVavll~~--vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish-~t~d~~p~ 198 (267)
T PF04672_consen 148 F-DRPVAVLLVA--VLHFVPDDDDPAGIVARLRDALAPGSYLAISH-ATDDGAPE 198 (267)
T ss_dssp T-TS--EEEECT---GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE-EB-TTSHH
T ss_pred C-CCCeeeeeee--eeccCCCccCHHHHHHHHHHhCCCCceEEEEe-cCCCCCHH
Confidence 2 2344444443 366664 56899999999999999999984 34444444
No 323
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=94.99 E-value=0.011 Score=60.70 Aligned_cols=112 Identities=24% Similarity=0.372 Sum_probs=82.7
Q ss_pred cccccCccccceeeeccC-CCeEEEEeecCCCCCChhHHHhhcccccccccccccCCCC-ccccccccccccccccCCcc
Q 003776 646 NVMDMRSVYGGFAAAMKD-ISVWVMNVISIDSPDTLPIIYERGLFGIYHDWCESFSTYP-RTYDLLHADHLFSKIKKRCN 723 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~-~~vwvmnv~p~~~~~~l~~i~eRGlig~~~~~ce~f~typ-rtyDl~Ha~~~~s~~~~rC~ 723 (796)
.|||.|||.|.+-++|.+ +.|-+.-|-- .+..+.-...||+-=+-+|.-+-++.|| .+||.|=.+..+.... .
T Consensus 16 rVLDLGCGdG~LL~~L~~~k~v~g~GvEi--d~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~---~ 90 (193)
T PF07021_consen 16 RVLDLGCGDGELLAYLKDEKQVDGYGVEI--DPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR---R 90 (193)
T ss_pred EEEecCCCchHHHHHHHHhcCCeEEEEec--CHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh---H
Confidence 499999999999999987 5676665542 2356778899999988899999999888 7999987555444332 2
Q ss_pred hHHHHHhhcccccCCcEEEEe------------------------------ccHH----HHHHHHHHHhcCCceEE
Q 003776 724 LVAVVAEVDRILRPEGKLIVR------------------------------DDVE----TINELESMVKGMQWEVR 765 (796)
Q Consensus 724 ~~~~l~E~DRiLRP~G~~i~r------------------------------d~~~----~~~~~~~~~~~l~W~~~ 765 (796)
-..||-|| ||=|...|++ |++. .+...+.+.+.+.+.+.
T Consensus 91 P~~vL~Em---lRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~ 163 (193)
T PF07021_consen 91 PDEVLEEM---LRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIE 163 (193)
T ss_pred HHHHHHHH---HHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEE
Confidence 35778898 5557788874 3333 56677777777777664
No 324
>PRK04457 spermidine synthase; Provisional
Probab=94.98 E-value=0.037 Score=59.47 Aligned_cols=136 Identities=13% Similarity=0.117 Sum_probs=72.5
Q ss_pred cccccccccCccccceeeeccCC-CeEEEEeecCCC-CCChhHHHhh-cccc-------cccccccccCCCCcccccccc
Q 003776 642 STVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDS-PDTLPIIYER-GLFG-------IYHDWCESFSTYPRTYDLLHA 711 (796)
Q Consensus 642 ~~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~-~~~l~~i~eR-Glig-------~~~~~ce~f~typrtyDl~Ha 711 (796)
...+.|||+|||.|+++.+|... |- +.|+-++- +.-+.++-++ ++.+ +..|.-+-+...+.+||+|=.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPD--TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 35688999999999999877543 21 12222222 2333333332 1111 123333334445678999965
Q ss_pred ccccccc--cCCcchHHHHHhhcccccCCcEEEE---eccHHHHHHHHHHHhcCCceEEEeec-cCCceEEEEEe
Q 003776 712 DHLFSKI--KKRCNLVAVVAEVDRILRPEGKLIV---RDDVETINELESMVKGMQWEVRMTYS-KDKEGLLCVEK 780 (796)
Q Consensus 712 ~~~~s~~--~~rC~~~~~l~E~DRiLRP~G~~i~---rd~~~~~~~~~~~~~~l~W~~~~~~~-~~~e~~l~~~K 780 (796)
+. |... ........++-++-++|+|||.+++ .........++.+...+.-.+.+... .....++++.|
T Consensus 143 D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~~~~N~v~~a~~ 216 (262)
T PRK04457 143 DG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAESHGNVAVFAFK 216 (262)
T ss_pred eC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecCCCccEEEEEEC
Confidence 52 3321 1112235788899999999999997 23322333344444444322222211 22346788876
No 325
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=94.97 E-value=0.11 Score=55.60 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=66.4
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP 448 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP 448 (796)
...++.|.+.+.. ..+..|||||+|+|.++..|+++ +|+++++++.....-+..+. ....+.++..|...+.
T Consensus 16 ~~~~~~Iv~~~~~----~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~ 89 (262)
T PF00398_consen 16 PNIADKIVDALDL----SEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWD 89 (262)
T ss_dssp HHHHHHHHHHHTC----GTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSC
T ss_pred HHHHHHHHHhcCC----CCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh--hcccceeeecchhccc
Confidence 3455666666543 25789999999999999999875 89999999866544432222 2344567777877766
Q ss_pred CCC---CceeEEEEcCCCcccccchHHHHHHHHhhcCC
Q 003776 449 FPG---IVFDAVHCARCRVPWHIEGGKLLLELNRVLRP 483 (796)
Q Consensus 449 fpd---~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKP 483 (796)
++. +....|+++. ++.. ...+|..+...-+.
T Consensus 90 ~~~~~~~~~~~vv~Nl---Py~i-s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 90 LYDLLKNQPLLVVGNL---PYNI-SSPILRKLLELYRF 123 (262)
T ss_dssp GGGHCSSSEEEEEEEE---TGTG-HHHHHHHHHHHGGG
T ss_pred cHHhhcCCceEEEEEe---cccc-hHHHHHHHhhcccc
Confidence 554 4566777764 4432 34556665553333
No 326
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.79 E-value=0.0068 Score=60.09 Aligned_cols=48 Identities=31% Similarity=0.407 Sum_probs=40.2
Q ss_pred CCCCCCCCCceeEEEEcCCCccccc---chHHHHHHHHhhcCCCcEEEEEeCC
Q 003776 444 TERLPFPGIVFDAVHCARCRVPWHI---EGGKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 444 ~e~LPfpd~SFDlVvss~~~l~w~~---d~~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
....+|.+++.|+|++.. +..|. ....++++++|+|||||+|-++++.
T Consensus 38 s~e~~F~dns~d~iyaeH--vlEHlt~~Eg~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 38 SNESMFEDNSVDAIYAEH--VLEHLTYDEGTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred hhhccCCCcchHHHHHHH--HHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence 356789999999999987 55565 4578999999999999999998653
No 327
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=94.71 E-value=0.069 Score=55.71 Aligned_cols=120 Identities=15% Similarity=0.214 Sum_probs=62.0
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCCCChhHHHhhccccccccc-ccccCCCCccccccccccccccccCCc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSPDTLPIIYERGLFGIYHDW-CESFSTYPRTYDLLHADHLFSKIKKRC 722 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~~~l~~i~eRGlig~~~~~-ce~f~typrtyDl~Ha~~~~s~~~~rC 722 (796)
-.|-|||||-|-.|+++.+. .|.-.-.+..... + +. -|. --|++ +.+.|++= .++|+-. -
T Consensus 74 ~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~--V--------ta--cdia~vPL~--~~svDv~V--fcLSLMG--T 135 (219)
T PF05148_consen 74 LVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPR--V--------TA--CDIANVPLE--DESVDVAV--FCLSLMG--T 135 (219)
T ss_dssp S-EEEES-TT-HHHHH--S---EEEEESS-SSTT--E--------EE--S-TTS-S----TT-EEEEE--EES---S--S
T ss_pred EEEEECCCchHHHHHhcccCceEEEeeccCCCCC--E--------EE--ecCccCcCC--CCceeEEE--EEhhhhC--C
Confidence 46899999999999887532 3444444443321 1 00 111 12233 36777754 2333211 2
Q ss_pred chHHHHHhhcccccCCcEEEEeccHH---HHHHHHHHHhcCCceEEEeeccCC-ceEEEEEecc
Q 003776 723 NLVAVVAEVDRILRPEGKLIVRDDVE---TINELESMVKGMQWEVRMTYSKDK-EGLLCVEKSM 782 (796)
Q Consensus 723 ~~~~~l~E~DRiLRP~G~~i~rd~~~---~~~~~~~~~~~l~W~~~~~~~~~~-e~~l~~~K~~ 782 (796)
++.++|.|-.|||||||.++|-+-.. .+...-+.++++-.++...+..++ =-++...|.-
T Consensus 136 n~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~~ 199 (219)
T PF05148_consen 136 NWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKKIR 199 (219)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-S
T ss_pred CcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEEcC
Confidence 45689999999999999999964443 334445566888888877654433 2345555554
No 328
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=94.65 E-value=0.53 Score=51.68 Aligned_cols=124 Identities=18% Similarity=0.259 Sum_probs=67.5
Q ss_pred cccccCccccceeeeccCCC---eEEEEeecCCCC-CChh----HHHhhcccc---cccccccccCCCCccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDIS---VWVMNVISIDSP-DTLP----IIYERGLFG---IYHDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~---vwvmnv~p~~~~-~~l~----~i~eRGlig---~~~~~ce~f~typrtyDl~Ha~~~ 714 (796)
+|+|.|||+|-.|+.|.+.+ -++| +|.. .-|. -+-.-|+=+ ...+-+++-. ..||+|=++-=
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p~~~vtm----vDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~---~kfd~IisNPP 233 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSPQAKLTL----VDVNARAVESARKNLAANGVENTEVWASNLYEPVE---GKFDLIISNPP 233 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCCCCeEEE----EecCHHHHHHHHHhHHHcCCCccEEEEeccccccc---ccccEEEeCCC
Confidence 89999999999999998764 3444 3332 1111 112223333 2233344333 48999775544
Q ss_pred cccccCC--cchHHHHHhhcccccCCcEEEEe--ccHHHHHHHHHHHhcCCceEEEeeccCCceEEEEEe
Q 003776 715 FSKIKKR--CNLVAVVAEVDRILRPEGKLIVR--DDVETINELESMVKGMQWEVRMTYSKDKEGLLCVEK 780 (796)
Q Consensus 715 ~s~~~~r--C~~~~~l~E~DRiLRP~G~~i~r--d~~~~~~~~~~~~~~l~W~~~~~~~~~~e~~l~~~K 780 (796)
|-.-+.- -....|+.+-=+-|+|||-++|= -...+-.+++++-. ++.......+=+|+-+.|
T Consensus 234 fh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg----~v~~la~~~gf~Vl~a~k 299 (300)
T COG2813 234 FHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG----NVEVLAKNGGFKVLRAKK 299 (300)
T ss_pred ccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC----CEEEEEeCCCEEEEEEec
Confidence 4322110 01135777888999999988874 33334445555443 444433333334544444
No 329
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.65 E-value=0.13 Score=57.17 Aligned_cols=114 Identities=21% Similarity=0.221 Sum_probs=63.7
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCe-EEEEcC--CC
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPA-ISAVMG--TE 445 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~-~~~v~d--~e 445 (796)
++.+....+.+. ..+|||+|.|.|.-+.++... .++.++.++. +..---..+..-+... .....+ ..
T Consensus 102 L~~L~~~~~dfa----pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~-lrkV~~tl~~nv~t~~td~r~s~vt~d 176 (484)
T COG5459 102 LDELQKRVPDFA----PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPA-LRKVGDTLAENVSTEKTDWRASDVTED 176 (484)
T ss_pred HHHHHHhCCCcC----cchhhccCCCCchhhhhhcccCCCchhhhhhccCHH-HHHHHHHHHhhcccccCCCCCCccchh
Confidence 355555666533 567999999999766555432 5556666652 2222222222222111 011111 24
Q ss_pred CCCCC-CCceeEEEEcCCCccccc--chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 446 RLPFP-GIVFDAVHCARCRVPWHI--EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 446 ~LPfp-d~SFDlVvss~~~l~w~~--d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+++++ ...|++|+...-+++--. .....+..+..+|.|||.|+|...
T Consensus 177 Rl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 177 RLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred ccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 55554 356888887653333222 223478889999999999999843
No 330
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=94.63 E-value=0.014 Score=63.88 Aligned_cols=98 Identities=16% Similarity=0.221 Sum_probs=61.3
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh------c--ccccccccccccCCCCccc----c-ccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER------G--LFGIYHDWCESFSTYPRTY----D-LLH 710 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR------G--lig~~~~~ce~f~typrty----D-l~H 710 (796)
.+|||+|||.|.++..|++.-.=...|+++|-. .-|..+.+| + +.++..|.++.++. |..+ + ++.
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~-~~~~~~~~~~~~~ 143 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLAL-PPEPAAGRRLGFF 143 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhh-hcccccCCeEEEE
Confidence 569999999999988887541002457788776 666666554 2 24566677665432 3333 2 222
Q ss_pred cccccccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 711 ADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 711 a~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
....|... .+=....+|-+|=+.|+|||.++|.
T Consensus 144 ~gs~~~~~-~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 144 PGSTIGNF-TPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred ecccccCC-CHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 22222222 2223457899999999999999974
No 331
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.50 E-value=0.13 Score=58.40 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=17.6
Q ss_pred CCCCCceeEEEEcCCCccccc
Q 003776 448 PFPGIVFDAVHCARCRVPWHI 468 (796)
Q Consensus 448 Pfpd~SFDlVvss~~~l~w~~ 468 (796)
-||.++.+++||+.+ +||..
T Consensus 157 LfP~~Slh~~~Ss~s-lHWLS 176 (386)
T PLN02668 157 LFPARSIDVFHSAFS-LHWLS 176 (386)
T ss_pred ccCCCceEEEEeecc-ceecc
Confidence 388999999999986 99975
No 332
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=94.48 E-value=0.052 Score=48.25 Aligned_cols=94 Identities=20% Similarity=0.319 Sum_probs=56.2
Q ss_pred ccccCccccc--eeeeccCCCeEEEEeecCCCC-CChhHHHhhc-------cccccccccc-ccCCCC-ccccccccccc
Q 003776 647 VMDMRSVYGG--FAAAMKDISVWVMNVISIDSP-DTLPIIYERG-------LFGIYHDWCE-SFSTYP-RTYDLLHADHL 714 (796)
Q Consensus 647 vmDm~~g~g~--faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRG-------lig~~~~~ce-~f~typ-rtyDl~Ha~~~ 714 (796)
++|+|||.|. +.+.+......+.. .+.. ..+.....+. +-.+..++.. .++.-. .+||++ ....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVG---VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEE---EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 9999999998 55555554434443 2222 2222221111 1233344433 133323 389998 6665
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEeccH
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDV 747 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~ 747 (796)
...+.. ...++-++-|+|+|+|.+++....
T Consensus 128 ~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 544444 788999999999999999987443
No 333
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.46 E-value=0.39 Score=51.02 Aligned_cols=95 Identities=22% Similarity=0.233 Sum_probs=66.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEc-CCCCCC---CCCCceeEEEEc
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVM-GTERLP---FPGIVFDAVHCA 460 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~-d~e~LP---fpd~SFDlVvss 460 (796)
.+++++||||+-||.|+..|+++ .|+++|+.-..++.- .+....+..... ++..+. |. +..|+|+|-
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k-----LR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~D 151 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK-----LRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVID 151 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHh-----HhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEE
Confidence 46899999999999999999986 899999976544332 233333332222 223331 22 267899986
Q ss_pred CCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 461 RCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 461 ~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
.++ ..+..+|..+..+|+|+|.+++-.-
T Consensus 152 vSF----ISL~~iLp~l~~l~~~~~~~v~LvK 179 (245)
T COG1189 152 VSF----ISLKLILPALLLLLKDGGDLVLLVK 179 (245)
T ss_pred eeh----hhHHHHHHHHHHhcCCCceEEEEec
Confidence 532 2577999999999999999886543
No 334
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=94.41 E-value=0.025 Score=58.30 Aligned_cols=87 Identities=16% Similarity=0.181 Sum_probs=47.3
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh----ccc--ccc-cccccccCCCCccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER----GLF--GIY-HDWCESFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gli--g~~-~~~ce~f~typrtyDl~Ha~~~~s 716 (796)
..|||+|||+|.+++.|....- .|+-++.. .-+..+-++ |+- -+. .|.-+.++. ...||+|..+..+.
T Consensus 80 ~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~I~~~~~~~ 155 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPA-YAPFDRILVTAAAP 155 (212)
T ss_pred CEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCc-CCCcCEEEEccCch
Confidence 4699999999999886654311 12222322 223322221 331 111 222122221 26899998665332
Q ss_pred cccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 717 KIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 717 ~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
.+.-++-+.|+|||.+++.
T Consensus 156 ---------~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 156 ---------EIPRALLEQLKEGGILVAP 174 (212)
T ss_pred ---------hhhHHHHHhcCCCcEEEEE
Confidence 2234456899999999974
No 335
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=94.37 E-value=0.044 Score=59.55 Aligned_cols=130 Identities=18% Similarity=0.330 Sum_probs=78.5
Q ss_pred cccccCccccceeeeccCC-CeEEEEeecCCCC-CChhH----HHhhcc---cccccccccccCCCCccccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPI----IYERGL---FGIYHDWCESFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~----i~eRGl---ig~~~~~ce~f~typrtyDl~Ha~~~~s 716 (796)
+|+|||||.|--|.+|... |. .+|+-+|-. .-|.+ +-..|| +-+..|| |+..+.+||||=++==+-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~--~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dl---f~~~~~~fDlIVsNPPYi 187 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD--AEVIAVDISPDALALARENAERNGLVRVLVVQSDL---FEPLRGKFDLIVSNPPYI 187 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC--CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeec---ccccCCceeEEEeCCCCC
Confidence 8999999999999999765 33 345555543 33433 233353 2333344 444445888875332110
Q ss_pred -------------------cccCCcch---HHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCCc-eEE--EeeccC
Q 003776 717 -------------------KIKKRCNL---VAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQW-EVR--MTYSKD 771 (796)
Q Consensus 717 -------------------~~~~rC~~---~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W-~~~--~~~~~~ 771 (796)
.+.....+ ..|+-+..++|+|||++++.-...-...|+++.....+ ... ..+-.+
T Consensus 188 p~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~~~~v~~~~d~~g 267 (280)
T COG2890 188 PAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGFFEIVETLKDLFG 267 (280)
T ss_pred CCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCCceEEEEEecCCC
Confidence 11111332 46788899999999999998776667788888877774 222 223334
Q ss_pred CceEEEEEe
Q 003776 772 KEGLLCVEK 780 (796)
Q Consensus 772 ~e~~l~~~K 780 (796)
.+.++++++
T Consensus 268 ~~rv~~~~~ 276 (280)
T COG2890 268 RDRVVLAKL 276 (280)
T ss_pred ceEEEEEEe
Confidence 455555543
No 336
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=94.34 E-value=0.0025 Score=57.73 Aligned_cols=92 Identities=21% Similarity=0.235 Sum_probs=56.2
Q ss_pred ccccCccccceeeeccCCC--eEEEEeecCCCC-CChhHHHhhc----c-cc-cccccccccCCCCcccccccccccccc
Q 003776 647 VMDMRSVYGGFAAAMKDIS--VWVMNVISIDSP-DTLPIIYERG----L-FG-IYHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 647 vmDm~~g~g~faA~l~~~~--vwvmnv~p~~~~-~~l~~i~eRG----l-ig-~~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
|||+|||.|.+..+|...- ---..+.-+|-. ..|..+.++. + += +..|. ..++..-.+||+|=+.+++-.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~-~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADA-RDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCT-TCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCH-hHCcccCCCeeEEEEcCCccC
Confidence 7999999999998887530 001334444443 5566665555 1 11 22222 334544469999998766333
Q ss_pred ccCCcchHHHHHhhcccccCCc
Q 003776 718 IKKRCNLVAVVAEVDRILRPEG 739 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G 739 (796)
+..+=.+..+|=+|=|+|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 4556667889999999999998
No 337
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=94.25 E-value=0.0089 Score=62.74 Aligned_cols=96 Identities=21% Similarity=0.371 Sum_probs=64.2
Q ss_pred cccccccccccccCccccceeeeccCC-C---eEEEEeecCCCCCChhHHHhh-cccccccccccccCCCCccccccccc
Q 003776 638 GINWSTVRNVMDMRSVYGGFAAAMKDI-S---VWVMNVISIDSPDTLPIIYER-GLFGIYHDWCESFSTYPRTYDLLHAD 712 (796)
Q Consensus 638 gi~w~~iRnvmDm~~g~g~faA~l~~~-~---vwvmnv~p~~~~~~l~~i~eR-Glig~~~~~ce~f~typrtyDl~Ha~ 712 (796)
...|..++.|+|+|+|.|.|++++... | +.|+ |-|..+..+.+. .+--+=||+= .++|. ||++...
T Consensus 95 ~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~-----Dlp~v~~~~~~~~rv~~~~gd~f---~~~P~-~D~~~l~ 165 (241)
T PF00891_consen 95 AFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVF-----DLPEVIEQAKEADRVEFVPGDFF---DPLPV-ADVYLLR 165 (241)
T ss_dssp HSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEE-----E-HHHHCCHHHTTTEEEEES-TT---TCCSS-ESEEEEE
T ss_pred cccccCccEEEeccCcchHHHHHHHHHCCCCcceee-----ccHhhhhccccccccccccccHH---hhhcc-ccceeee
Confidence 367899999999999999999999643 3 3443 333223333332 1322334443 44556 9999999
Q ss_pred cccccccC-CcchHHHHHhhcccccCC--cEEEEe
Q 003776 713 HLFSKIKK-RCNLVAVVAEVDRILRPE--GKLIVR 744 (796)
Q Consensus 713 ~~~s~~~~-rC~~~~~l~E~DRiLRP~--G~~i~r 744 (796)
+++-.|.. .|. .||--+=+.|+|| |.++|-
T Consensus 166 ~vLh~~~d~~~~--~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 166 HVLHDWSDEDCV--KILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp SSGGGS-HHHHH--HHHHHHHHHSEECTTEEEEEE
T ss_pred hhhhhcchHHHH--HHHHHHHHHhCCCCCCeEEEE
Confidence 99988864 343 4788899999999 999985
No 338
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.11 E-value=0.045 Score=54.84 Aligned_cols=104 Identities=16% Similarity=0.225 Sum_probs=62.8
Q ss_pred CCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeE-EEE----c--CCCCCCCCCCceeEE
Q 003776 390 TRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAI-SAV----M--GTERLPFPGIVFDAV 457 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~-~~v----~--d~e~LPfpd~SFDlV 457 (796)
+++||++|.|--.++..|... .|...|-....+ ..++....++.... ..+ . ...+.....++||+|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~sv--rnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiI 107 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESV--RNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDII 107 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHH--HHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEE
Confidence 689999999966666655542 677777654333 22233332221100 000 0 012222345689999
Q ss_pred EEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 003776 458 HCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQ 496 (796)
Q Consensus 458 vss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~ 496 (796)
+|+.| +.+......+..-|.+.|||.|..++..|--.+
T Consensus 108 laADC-lFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~ 145 (201)
T KOG3201|consen 108 LAADC-LFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQ 145 (201)
T ss_pred Eeccc-hhHHHHHHHHHHHHHHHhCcccceeEecCcccc
Confidence 99998 544545577888899999999998776553333
No 339
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=94.05 E-value=0.1 Score=56.79 Aligned_cols=106 Identities=18% Similarity=0.289 Sum_probs=70.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEE-cCCCCC-C-CCCCceeEEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAV-MGTERL-P-FPGIVFDAVHC 459 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v-~d~e~L-P-fpd~SFDlVvs 459 (796)
.++.+|||+.+|.|.-+.+|+.. .|++.|+++.-+..-+ ..+.+.|+...... .|...+ + .....||.|+.
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~-~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLK-ENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHH-HHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHH-HHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 45789999999999877777653 7999999997665554 45556677654444 444333 2 22346999996
Q ss_pred ----cC-CCcccccch----------------HHHHHHHHhhc----CCCcEEEEEeCCC
Q 003776 460 ----AR-CRVPWHIEG----------------GKLLLELNRVL----RPGGFFIWSATPV 494 (796)
Q Consensus 460 ----s~-~~l~w~~d~----------------~~~L~Ei~RVL----KPGG~fv~s~~~~ 494 (796)
+. ..+.-+++. ..+|..+.+.| ||||+++.++...
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 21 112222211 26788899999 9999999997643
No 340
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=93.92 E-value=0.019 Score=52.40 Aligned_cols=93 Identities=17% Similarity=0.156 Sum_probs=39.0
Q ss_pred EEECCCCchhHHHHhhC-------CeEEEeCChhhHHHHHHHHHHHcCC--CeEEEEcCCC-CCC-CCCCceeEEEEcCC
Q 003776 394 LDVGCGVASFGGFLFDR-------GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTE-RLP-FPGIVFDAVHCARC 462 (796)
Q Consensus 394 LDIGCGtG~~a~~La~~-------~V~gvDiSp~dl~~A~~q~A~ergl--~~~~~v~d~e-~LP-fpd~SFDlVvss~~ 462 (796)
|+||+..|..+..|++. .++++|..+. ...++ +..++.++ .+.+...+.. .++ ++..+||+|+.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~-~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQ-EIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG- 77 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccc-hhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-
Confidence 68999999887777652 5899999874 11121 22332333 2455555542 222 2357899999865
Q ss_pred CcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 463 RVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 463 ~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
-|........|..+.+.|+|||++++-
T Consensus 78 -~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 78 -DHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred -CCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 333345567888999999999999975
No 341
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=93.86 E-value=0.056 Score=62.55 Aligned_cols=59 Identities=27% Similarity=0.374 Sum_probs=46.9
Q ss_pred CCCCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCCe-EEEEcCCCCC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPA-ISAVMGTERL 447 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~~-~~~v~d~e~L 447 (796)
+.+..+||+-||||.++..|+++ .|+|+++++..+..|. ..|...|+.+ .++++.++++
T Consensus 382 ~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~-~nA~~NgisNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 382 PADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAE-KNAQINGISNATFIVGQAEDL 443 (534)
T ss_pred CCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhh-hcchhcCccceeeeecchhhc
Confidence 45689999999999999999986 9999999998888776 6677778765 4555534443
No 342
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=93.60 E-value=0.065 Score=56.70 Aligned_cols=108 Identities=21% Similarity=0.330 Sum_probs=60.3
Q ss_pred cccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh-------ccccc-ccccccccCCCCccccccccccc
Q 003776 644 VRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER-------GLFGI-YHDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 644 iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR-------Glig~-~~~~ce~f~typrtyDl~Ha~~~ 714 (796)
=++|||+|||+|+|.-.|...++- .|+-+|.. ++|.--+.. +..-+ +.+|-+-.+ |++-++-.
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~~ga~--~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~------d~~~~Dvs 147 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQKGAK--EVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFP------DFATFDVS 147 (228)
T ss_pred CCEEEEcccCCCHHHHHHHHcCCC--EEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCC------CceeeeEE
Confidence 457999999999999999877431 22233332 233321111 22111 234544322 33333332
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEE-------------------eccH---HHHHHHHHHHhcCCceEEE
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIV-------------------RDDV---ETINELESMVKGMQWEVRM 766 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~-------------------rd~~---~~~~~~~~~~~~l~W~~~~ 766 (796)
|. .+..+|-.|.++|+| |.+|+ +|.. .++.++...+..+-|.+.-
T Consensus 148 fi------S~~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (228)
T TIGR00478 148 FI------SLISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKK 214 (228)
T ss_pred Ee------ehHhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEee
Confidence 32 233357788888888 77764 3433 3666677777888888753
No 343
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=93.55 E-value=0.26 Score=50.91 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=54.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHH-------HHHHHHHHcCCCeE-EEEcCCCCCCCCCCceeE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHE-------AQVQFALERGIPAI-SAVMGTERLPFPGIVFDA 456 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~-------A~~q~A~ergl~~~-~~v~d~e~LPfpd~SFDl 456 (796)
+++.+|+|+=.|.|.|++.|... .-....+.|..+.. .....+++...... .+-...-.++ +.+..|+
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~d~ 125 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKLDL 125 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCcccc
Confidence 57899999999999999988764 11223334433311 11111111111100 0111112222 2334444
Q ss_pred EEE--------cCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 457 VHC--------ARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 457 Vvs--------s~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
++. +.. +| ......+.+++++.|||||.+++..+
T Consensus 126 ~~~~~~yhdmh~k~-i~-~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 126 VPTAQNYHDMHNKN-IH-PATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred cccchhhhhhhccc-cC-cchHHHHHHHHHHhcCCCcEEEEEec
Confidence 443 321 22 22457899999999999999998754
No 344
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=93.53 E-value=0.025 Score=58.22 Aligned_cols=118 Identities=16% Similarity=0.164 Sum_probs=70.6
Q ss_pred cccccCccccceeeeccC--CCeEEEEeecCCCC--CChhHHHhhcccccccccccccC---C--CCcccccccccccc-
Q 003776 646 NVMDMRSVYGGFAAAMKD--ISVWVMNVISIDSP--DTLPIIYERGLFGIYHDWCESFS---T--YPRTYDLLHADHLF- 715 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~--~~vwvmnv~p~~~~--~~l~~i~eRGlig~~~~~ce~f~---t--yprtyDl~Ha~~~~- 715 (796)
.+||+|||.|.|.++|.. .+.-++-|=+.... ..+.-+..+||--+.--.|.+.- . -|.+.|.|| -.|
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~--i~FP 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIY--INFP 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEE--EES-
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEE--EeCC
Confidence 799999999999988843 23333344433332 35556777786333222222222 1 146888877 233
Q ss_pred ccc-----cCCcch-HHHHHhhcccccCCcEEEEe-ccHHHHHHHHHHHhc--CCceEE
Q 003776 716 SKI-----KKRCNL-VAVVAEVDRILRPEGKLIVR-DDVETINELESMVKG--MQWEVR 765 (796)
Q Consensus 716 s~~-----~~rC~~-~~~l~E~DRiLRP~G~~i~r-d~~~~~~~~~~~~~~--l~W~~~ 765 (796)
..| .+|..+ ..+|-++-|+|+|||.+.++ |..++...+...+.. -.++..
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence 234 235555 57788999999999999986 667777777776655 355544
No 345
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=93.42 E-value=0.26 Score=54.99 Aligned_cols=80 Identities=15% Similarity=0.142 Sum_probs=39.9
Q ss_pred CCCCEEEEECCCCchhHHHHhhC--------------------CeEEEeCChhhHHHHHHHHHHH-----cCCCe-EEEE
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR--------------------GVLTMSFAPKDEHEAQVQFALE-----RGIPA-ISAV 441 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~--------------------~V~gvDiSp~dl~~A~~q~A~e-----rgl~~-~~~v 441 (796)
+..-+|+|+||..|..+..+... .|.--|+-..|.+.-....... ...++ ...+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 34679999999999877665431 3455566555554322111111 11221 2223
Q ss_pred cC-CCCCCCCCCceeEEEEcCCCccccc
Q 003776 442 MG-TERLPFPGIVFDAVHCARCRVPWHI 468 (796)
Q Consensus 442 ~d-~e~LPfpd~SFDlVvss~~~l~w~~ 468 (796)
.+ .-.--||+++.|+++|+.+ +||..
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~a-lHWLS 121 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYA-LHWLS 121 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES--TTB-S
T ss_pred CchhhhccCCCCceEEEEEech-hhhcc
Confidence 33 2333488999999999986 99964
No 346
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=93.41 E-value=0.12 Score=56.69 Aligned_cols=127 Identities=20% Similarity=0.268 Sum_probs=66.7
Q ss_pred ccccccccCccccceeeeccCCC---eEEEEeecCCCCCChhHHHhh----cccccccccccccCCCC--cccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDIS---VWVMNVISIDSPDTLPIIYER----GLFGIYHDWCESFSTYP--RTYDLLHADH 713 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~---vwvmnv~p~~~~~~l~~i~eR----Glig~~~~~ce~f~typ--rtyDl~Ha~~ 713 (796)
.-|||||.|||.|=+|-|..+.. |.-.-+=| -.+.++.|- |+--+.+.=+-..+..| +.||+|=|+=
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp----~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI 237 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDP----QAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI 237 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCH----HHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh
Confidence 68999999999999877666542 33222211 122222221 11100011111112222 4899988432
Q ss_pred ccccccCCcchHHHHHhhcccccCCcEEEEeccHH-HHHHHHHHHhcCCceEEEeeccCCceEEEEEe
Q 003776 714 LFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVE-TINELESMVKGMQWEVRMTYSKDKEGLLCVEK 780 (796)
Q Consensus 714 ~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~~-~~~~~~~~~~~l~W~~~~~~~~~~e~~l~~~K 780 (796)
|=. .+..+.=++-|.|+|||++|++--.+ ..+.|..-..+--|.+.-.-. ..|.+.+.-|
T Consensus 238 LA~------vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~-~~eW~~i~~k 298 (300)
T COG2264 238 LAE------VLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLE-REEWVAIVGK 298 (300)
T ss_pred hHH------HHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEe-cCCEEEEEEE
Confidence 111 12344557789999999999984332 345556655566777654422 2455555443
No 347
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=93.13 E-value=0.043 Score=57.26 Aligned_cols=29 Identities=10% Similarity=-0.157 Sum_probs=23.1
Q ss_pred ccccccCccccceeeeccCC--CeEEEEeec
Q 003776 645 RNVMDMRSVYGGFAAAMKDI--SVWVMNVIS 673 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~--~vwvmnv~p 673 (796)
+.|||.|||.|-.|.+|.++ .|+.+=++|
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~ 66 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGVELSE 66 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEEeCCH
Confidence 57999999999999999887 455554444
No 348
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=93.11 E-value=0.75 Score=50.10 Aligned_cols=101 Identities=15% Similarity=0.172 Sum_probs=57.9
Q ss_pred CCEEEEECCCCchhHHHHhh-C-----CeEEEeCChhhHHHHHHHHHHH--cCCCeEEEEcCCCCCCCCCCceeEEEEcC
Q 003776 390 TRVVLDVGCGVASFGGFLFD-R-----GVLTMSFAPKDEHEAQVQFALE--RGIPAISAVMGTERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~-~-----~V~gvDiSp~dl~~A~~q~A~e--rgl~~~~~v~d~e~LPfpd~SFDlVvss~ 461 (796)
+.+|+=||||.=-++..+.. + .|+++|+++..+..++.-.+.. .+-...+...+...++..-..||+|+.+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 46999999997765555443 2 4889999998877775322212 23344666677666665556899999764
Q ss_pred CCccccc-chHHHHHHHHhhcCCCcEEEEEe
Q 003776 462 CRVPWHI-EGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 462 ~~l~w~~-d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
++.... +...+|..+.+.++||..+++..
T Consensus 201 -lVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 201 -LVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -T-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred -hcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 233222 66899999999999999999863
No 349
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=92.79 E-value=0.46 Score=53.14 Aligned_cols=93 Identities=18% Similarity=0.210 Sum_probs=62.9
Q ss_pred CCCCEEEEECCC-CchhHHHHhh---CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCC
Q 003776 388 KRTRVVLDVGCG-VASFGGFLFD---RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCR 463 (796)
Q Consensus 388 ~~~~~VLDIGCG-tG~~a~~La~---~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~ 463 (796)
+++.+|+-+|+| .|.++..+++ ++|+++|.++. +.+.|++.|........+...+.--.+.||+|+..-
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~-----K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv-- 237 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEE-----KLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV-- 237 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChH-----HHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC--
Confidence 468899999988 3356767766 38999999874 346666776554333222222221123499999853
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEeCC
Q 003776 464 VPWHIEGGKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 464 l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
. ...+....+.||+||.+++...+
T Consensus 238 -----~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 -----G-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -----C-hhhHHHHHHHHhcCCEEEEECCC
Confidence 2 57788899999999999988554
No 350
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=92.76 E-value=0.49 Score=52.04 Aligned_cols=95 Identities=18% Similarity=0.231 Sum_probs=51.0
Q ss_pred ccHHHHHHHHHHhCcccccC-CCCCEEEEECCCCchhHHHHhh----CCeEEEeCChhhHHHHHHHHHHHcCCC--eEEE
Q 003776 368 NGALHYIDFIQESVPDVAWG-KRTRVVLDVGCGVASFGGFLFD----RGVLTMSFAPKDEHEAQVQFALERGIP--AISA 440 (796)
Q Consensus 368 ~~a~~yid~L~e~Lp~i~~~-~~~~~VLDIGCGtG~~a~~La~----~~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~ 440 (796)
.++..|+..|.+.|...... ....++||||+|...+-..|.. -+++|.|+++..+..|+....+..++. +.+.
T Consensus 80 P~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~ 159 (299)
T PF05971_consen 80 PNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELR 159 (299)
T ss_dssp HHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEE
T ss_pred chhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEE
Confidence 34667887777776542211 1246899999998865444443 389999999999988885554432444 3232
Q ss_pred Ec-CC----CCCCCCCCceeEEEEcCC
Q 003776 441 VM-GT----ERLPFPGIVFDAVHCARC 462 (796)
Q Consensus 441 v~-d~----e~LPfpd~SFDlVvss~~ 462 (796)
.. +. ..+-.+...||+.+|+..
T Consensus 160 ~~~~~~~i~~~i~~~~e~~dftmCNPP 186 (299)
T PF05971_consen 160 KQKNPDNIFDGIIQPNERFDFTMCNPP 186 (299)
T ss_dssp E--ST-SSTTTSTT--S-EEEEEE---
T ss_pred EcCCccccchhhhcccceeeEEecCCc
Confidence 22 11 122234568999999873
No 351
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=92.69 E-value=0.46 Score=46.72 Aligned_cols=86 Identities=16% Similarity=0.087 Sum_probs=53.0
Q ss_pred CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCCC--CCCCceeEEEEcCCCccccc-----ch---HHHHHHHHh
Q 003776 411 GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLP--FPGIVFDAVHCARCRVPWHI-----EG---GKLLLELNR 479 (796)
Q Consensus 411 ~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~LP--fpd~SFDlVvss~~~l~w~~-----d~---~~~L~Ei~R 479 (796)
+|+++||-...+...+.++....... +.++..+-+.+. .+.+.+|+|+.++.+++-.. .+ -.+|..+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 48899999888877775554432222 455555545553 23358999999987666432 11 378889999
Q ss_pred hcCCCcEEEEEeCCCCC
Q 003776 480 VLRPGGFFIWSATPVYQ 496 (796)
Q Consensus 480 VLKPGG~fv~s~~~~~~ 496 (796)
+|+|||++++..-++..
T Consensus 81 lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 81 LLKPGGIITIVVYPGHP 97 (140)
T ss_dssp HEEEEEEEEEEE--STC
T ss_pred hhccCCEEEEEEeCCCC
Confidence 99999999998666555
No 352
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=92.62 E-value=0.24 Score=47.22 Aligned_cols=39 Identities=18% Similarity=0.298 Sum_probs=31.8
Q ss_pred EEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHH
Q 003776 392 VVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFA 430 (796)
Q Consensus 392 ~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A 430 (796)
++||+|||.|.++..++.. +|++++.++.+....+...+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~ 43 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVK 43 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHH
Confidence 4899999999999888764 59999999988777664433
No 353
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=92.40 E-value=0.077 Score=58.74 Aligned_cols=114 Identities=17% Similarity=0.190 Sum_probs=61.5
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhH----HHhhcccc--c-ccccccccCCCCccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPI----IYERGLFG--I-YHDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~----i~eRGlig--~-~~~~ce~f~typrtyDl~Ha~~~ 714 (796)
.=..|||.+||+|+|...+..... .|+-.|.. ..+.. +-.-|+-. + ..|.. .++..+.+||+|=++--
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~-~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDAT-KLPLSSESVDAIATDPP 257 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchh-cCCcccCCCCEEEECCC
Confidence 334699999999999544332222 22223332 22221 11224433 1 22222 23332468999886533
Q ss_pred ccc---cc---CCcchHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCCc
Q 003776 715 FSK---IK---KRCNLVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQW 762 (796)
Q Consensus 715 ~s~---~~---~rC~~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W 762 (796)
|.. .. ....+..+|-++-|+|+|||++++--... ..++.+++.--|
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 321 11 11335788999999999999988643221 134566777767
No 354
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.27 E-value=1.3 Score=46.25 Aligned_cols=113 Identities=17% Similarity=0.169 Sum_probs=72.6
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER 446 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~ 446 (796)
.+....|..-+..+. .+++.+||=||+.+|+...++..- .+.++++|+.....-. ..|.+|. ++.-+..|+ +
T Consensus 59 SKLaAaIl~Gl~~~p-i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl-~~a~~R~-Ni~PIL~DA-~ 134 (231)
T COG1889 59 SKLAAAILKGLKNFP-IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELL-DVAEKRP-NIIPILEDA-R 134 (231)
T ss_pred hHHHHHHHcCcccCC-cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHH-HHHHhCC-Cceeeeccc-C
Confidence 344444544443222 256889999999999988888763 5999999998765543 5565552 122233333 3
Q ss_pred CC----CCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 447 LP----FPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 447 LP----fpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.| +--...|+|++--+ -.....-+...+..-||+||+++++
T Consensus 135 ~P~~Y~~~Ve~VDviy~DVA---Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 135 KPEKYRHLVEKVDVIYQDVA---QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred CcHHhhhhcccccEEEEecC---CchHHHHHHHHHHHhcccCCeEEEE
Confidence 33 12246899998542 1223456777899999999988776
No 355
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=92.05 E-value=0.12 Score=56.68 Aligned_cols=97 Identities=16% Similarity=0.226 Sum_probs=64.9
Q ss_pred ccccccccCccccceeeeccCC-CeEEEEeecCCCCCChhHHHhhccccccc-ccc-----cccCCCCcccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSPDTLPIIYERGLFGIYH-DWC-----ESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~~~l~~i~eRGlig~~~-~~c-----e~f~typrtyDl~Ha~~~~ 715 (796)
+=|.|||+|||-|-|.=.|... +-.|+-+=|..-. .+|+-+-+-++|.-. -.. |.+|. ..+||+|-+.|||
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf-~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVL 192 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLF-YLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVL 192 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHH-HHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeeh
Confidence 3578999999999998788766 3466666665433 444444444444211 011 33454 6899999988887
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
=+ -|-++ ..|.++-..|||||-+||.
T Consensus 193 YH--rr~Pl-~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 193 YH--RRSPL-DHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred hc--cCCHH-HHHHHHHHhhCCCCEEEEE
Confidence 43 33334 4688999999999999974
No 356
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=91.94 E-value=0.16 Score=53.80 Aligned_cols=132 Identities=12% Similarity=0.140 Sum_probs=66.6
Q ss_pred cccccccccCccccc----eeeeccC-CCeEEEEeecCCCCCChhHHHhhcc---ccc-ccccccccCCC-----Ccccc
Q 003776 642 STVRNVMDMRSVYGG----FAAAMKD-ISVWVMNVISIDSPDTLPIIYERGL---FGI-YHDWCESFSTY-----PRTYD 707 (796)
Q Consensus 642 ~~iRnvmDm~~g~g~----faA~l~~-~~vwvmnv~p~~~~~~l~~i~eRGl---ig~-~~~~ce~f~ty-----prtyD 707 (796)
..-++|||+|||+|. +|+++.. -.|..+=.-|.....--..+-.-|+ |-+ .+|..+.++.+ ..+||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 457899999998885 3444432 2344332222111111112222343 111 22333333321 35899
Q ss_pred ccccccccccccCCcchHHHHHhhcccccCCcEEEEec---------c----H----HHHHHHHHH----HhcCCceEEE
Q 003776 708 LLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD---------D----V----ETINELESM----VKGMQWEVRM 766 (796)
Q Consensus 708 l~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd---------~----~----~~~~~~~~~----~~~l~W~~~~ 766 (796)
+|-.+.-- =....++-++=|+|||||.+|+-+ . . .....|+++ ...=+|...+
T Consensus 147 ~VfiDa~k------~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~~ 220 (234)
T PLN02781 147 FAFVDADK------PNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQ 220 (234)
T ss_pred EEEECCCH------HHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEEE
Confidence 99755422 123355666679999999999621 0 0 122334443 3344555544
Q ss_pred eeccCCceEEEEEec
Q 003776 767 TYSKDKEGLLCVEKS 781 (796)
Q Consensus 767 ~~~~~~e~~l~~~K~ 781 (796)
.. -.+++++++|.
T Consensus 221 lp--~gdG~~i~~k~ 233 (234)
T PLN02781 221 IS--IGDGVTLCRRL 233 (234)
T ss_pred EE--eCCccEEEEEe
Confidence 31 14688998885
No 357
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=91.86 E-value=0.018 Score=52.91 Aligned_cols=94 Identities=20% Similarity=0.267 Sum_probs=53.0
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCCCCChhHHHhhc------------ccccccccccccCCCCcccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSPDTLPIIYERG------------LFGIYHDWCESFSTYPRTYDLLHADH 713 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~~~l~~i~eRG------------lig~~~~~ce~f~typrtyDl~Ha~~ 713 (796)
.|||++||.|.|+.++...- ..+++=++-....--+..+- +.|=+.++.+.++ +..||+|=++-
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~--~~~~D~Iv~np 78 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLP--DGKFDLIVTNP 78 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCT--TT-EEEEEE--
T ss_pred EEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhcc--CceeEEEEECC
Confidence 48999999999998887543 22232222221111111111 1222222333344 37899998877
Q ss_pred cccccc-----CCcchHHHHHhhcccccCCcEEEE
Q 003776 714 LFSKIK-----KRCNLVAVVAEVDRILRPEGKLIV 743 (796)
Q Consensus 714 ~~s~~~-----~rC~~~~~l~E~DRiLRP~G~~i~ 743 (796)
-|.... .+=....++-++.|+|||||.+++
T Consensus 79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 79 PYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 776431 112345778899999999999986
No 358
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=91.85 E-value=0.079 Score=56.19 Aligned_cols=93 Identities=14% Similarity=0.335 Sum_probs=63.2
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhcc-cccccccccc----cCCCCcccccccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGL-FGIYHDWCES----FSTYPRTYDLLHADHLFSKIK 719 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGl-ig~~~~~ce~----f~typrtyDl~Ha~~~~s~~~ 719 (796)
.|||+|||-|.++-.|.... -+|.-+|.. ..+.++-.+.+ -|+..+|... +-.=--+||.|=|..++...-
T Consensus 62 ~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~ 138 (243)
T COG2227 62 RVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP 138 (243)
T ss_pred eEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence 39999999999999988777 577777876 67777665553 3333333211 110003577766555554443
Q ss_pred CCcchHHHHHhhcccccCCcEEEEe
Q 003776 720 KRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 720 ~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
....+|....+.|||||.++++
T Consensus 139 ---dp~~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 139 ---DPESFLRACAKLVKPGGILFLS 160 (243)
T ss_pred ---CHHHHHHHHHHHcCCCcEEEEe
Confidence 3456899999999999999997
No 359
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=91.80 E-value=0.19 Score=51.50 Aligned_cols=90 Identities=19% Similarity=0.186 Sum_probs=60.1
Q ss_pred CCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHc----C-CCeEEEEcCCCCCCCCCCceeEEEEcCC
Q 003776 390 TRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALER----G-IPAISAVMGTERLPFPGIVFDAVHCARC 462 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~er----g-l~~~~~v~d~e~LPfpd~SFDlVvss~~ 462 (796)
...+.|+|+|+|.++...+.. +|++++.+|.-. +.|.+. | ........|+....| ...|+|+|-+
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a-----~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEm- 104 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRA-----RLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEM- 104 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHH-----HHhhhcCCCCCCcceEEEecccccccc--cccceeHHHH-
Confidence 358999999999887766654 899999988543 233332 2 234556677777777 4579999954
Q ss_pred Ccccc---cchHHHHHHHHhhcCCCcEEE
Q 003776 463 RVPWH---IEGGKLLLELNRVLRPGGFFI 488 (796)
Q Consensus 463 ~l~w~---~d~~~~L~Ei~RVLKPGG~fv 488 (796)
+.-. .....++..+...||-+|.++
T Consensus 105 -lDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 105 -LDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred -hhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 2211 133466777777888888776
No 360
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=91.77 E-value=0.14 Score=58.76 Aligned_cols=95 Identities=17% Similarity=0.220 Sum_probs=52.7
Q ss_pred ccccccCccccceeeeccCC-C-eEEEEeecCCCC-CChhHH---Hhh-cccc----cccccccccCC--CCcccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-S-VWVMNVISIDSP-DTLPII---YER-GLFG----IYHDWCESFST--YPRTYDLLHA 711 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~-vwvmnv~p~~~~-~~l~~i---~eR-Glig----~~~~~ce~f~t--yprtyDl~Ha 711 (796)
.+||||+||.||++.+|... + -- |+-.|-. ..+..+ ++| |+-- +-.|... ++. -+.+||.|-.
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~~~~---v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~-~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAPQAQ---VVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRG-PSQWAENEQFDRILL 315 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcCCCe---EEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccc-ccccccccccCEEEE
Confidence 57999999999999877643 1 11 2222332 333322 232 4310 1112211 111 2467999975
Q ss_pred c------cccccccCCc--------------chHHHHHhhcccccCCcEEEEe
Q 003776 712 D------HLFSKIKKRC--------------NLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 712 ~------~~~s~~~~rC--------------~~~~~l~E~DRiLRP~G~~i~r 744 (796)
+ |+|... ..+ .-..||-++=|+|||||.+|++
T Consensus 316 DaPcSg~G~~~~~-p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvys 367 (426)
T TIGR00563 316 DAPCSATGVIRRH-PDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYA 367 (426)
T ss_pred cCCCCCCcccccC-cchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 4 333211 000 0146889999999999999987
No 361
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=91.62 E-value=3 Score=44.61 Aligned_cols=98 Identities=16% Similarity=0.121 Sum_probs=56.9
Q ss_pred CCCEEEEECCCCc-hhHHHHhh--CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCC-CCCCCC-CCceeEEEEcCCC
Q 003776 389 RTRVVLDVGCGVA-SFGGFLFD--RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT-ERLPFP-GIVFDAVHCARCR 463 (796)
Q Consensus 389 ~~~~VLDIGCGtG-~~a~~La~--~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~-e~LPfp-d~SFDlVvss~~~ 463 (796)
.+++||-||=..- +++..|.. ++|+++|++...+..-. +.|.+.|+++.....|. ..||-. .+.||++++..
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~-~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDP-- 120 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFIN-RVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDP-- 120 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHH-HHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHH-HHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCC--
Confidence 4789999997765 35555543 48999999998776654 78888899987777775 445421 47999999975
Q ss_pred ccccc-chHHHHHHHHhhcCCCc-EEEEE
Q 003776 464 VPWHI-EGGKLLLELNRVLRPGG-FFIWS 490 (796)
Q Consensus 464 l~w~~-d~~~~L~Ei~RVLKPGG-~fv~s 490 (796)
+|.. -...++......||.-| ..+|+
T Consensus 121 -PyT~~G~~LFlsRgi~~Lk~~g~~gy~~ 148 (243)
T PF01861_consen 121 -PYTPEGLKLFLSRGIEALKGEGCAGYFG 148 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-EEEEE
T ss_pred -CCCHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 4454 33567778888998766 44444
No 362
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=91.56 E-value=0.95 Score=47.20 Aligned_cols=92 Identities=16% Similarity=0.110 Sum_probs=57.6
Q ss_pred EEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcC-CCCCCCCCCc-eeEEEEcCCCc
Q 003776 393 VLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMG-TERLPFPGIV-FDAVHCARCRV 464 (796)
Q Consensus 393 VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d-~e~LPfpd~S-FDlVvss~~~l 464 (796)
|.||||-.|.+..+|.++ .++++|+++.-+..|+...+ ..++. +.+...| ...|+ .+. .|.|+.+. +
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~-~~~l~~~i~~rlgdGL~~l~--~~e~~d~ivIAG--M 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIA-KYGLEDRIEVRLGDGLEVLK--PGEDVDTIVIAG--M 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHH-HTT-TTTEEEEE-SGGGG----GGG---EEEEEE--E
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-HcCCcccEEEEECCcccccC--CCCCCCEEEEec--C
Confidence 689999999999999986 69999999999998885555 44543 4455555 34443 333 78887654 2
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
-.. -....|.+....++..-.|++.
T Consensus 76 GG~-lI~~ILe~~~~~~~~~~~lILq 100 (205)
T PF04816_consen 76 GGE-LIIEILEAGPEKLSSAKRLILQ 100 (205)
T ss_dssp -HH-HHHHHHHHTGGGGTT--EEEEE
T ss_pred CHH-HHHHHHHhhHHHhccCCeEEEe
Confidence 211 1245566666777777788886
No 363
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=91.44 E-value=0.12 Score=55.62 Aligned_cols=90 Identities=18% Similarity=0.492 Sum_probs=61.3
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCCCCh-hHHHhhcc--cccccccccccCCCCcccccccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSPDTL-PIIYERGL--FGIYHDWCESFSTYPRTYDLLHADHLFSKIK 719 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~~~l-~~i~eRGl--ig~~~~~ce~f~typrtyDl~Ha~~~~s~~~ 719 (796)
+..++||+|||-|+--+.|... .=.|.-+...... --.-.||+ +++. +|-+. +..||+|-|-+|+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~Mr~rL~~kg~~vl~~~-~w~~~----~~~fDvIscLNvL---- 161 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPPMRWRLSKKGFTVLDID-DWQQT----DFKFDVISCLNVL---- 161 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh---cceEEeecCCHHHHHHHHhCCCeEEehh-hhhcc----CCceEEEeehhhh----
Confidence 4678999999999988888542 1223333333222 23456884 5544 37542 4679999977665
Q ss_pred CCcch-HHHHHhhcccccCCcEEEEe
Q 003776 720 KRCNL-VAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 720 ~rC~~-~~~l~E~DRiLRP~G~~i~r 744 (796)
+||.- ..+|-+|-+.|+|+|.+||.
T Consensus 162 DRc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 162 DRCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred hccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 57876 46788999999999999984
No 364
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=91.24 E-value=1.7 Score=49.74 Aligned_cols=108 Identities=16% Similarity=0.210 Sum_probs=69.3
Q ss_pred CCCCCEEEEECCCCchhHHHHhh----C-CeEEEeCChhhHHHHHHHHHHHcCCCeEEEE-cCCCCCC---CCCCceeEE
Q 003776 387 GKRTRVVLDVGCGVASFGGFLFD----R-GVLTMSFAPKDEHEAQVQFALERGIPAISAV-MGTERLP---FPGIVFDAV 457 (796)
Q Consensus 387 ~~~~~~VLDIGCGtG~~a~~La~----~-~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v-~d~e~LP---fpd~SFDlV 457 (796)
..++.+|||+.+..|.=+.+++. . -|++.|....-+..- .+.+.+.|+.....+ .|...+| |+. +||-|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l-~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRV 316 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSL-KANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRV 316 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHH-HHHHHHhCCCceEEEccCcccccccccCc-cccee
Confidence 35688999999999964444443 2 678888766544333 355666787654443 4445554 554 89999
Q ss_pred EE----cCCCccccc----------c-------hHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 003776 458 HC----ARCRVPWHI----------E-------GGKLLLELNRVLRPGGFFIWSATPVYQ 496 (796)
Q Consensus 458 vs----s~~~l~w~~----------d-------~~~~L~Ei~RVLKPGG~fv~s~~~~~~ 496 (796)
+. +...+.+-. + ..++|......++|||+|+.++..+.-
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 84 321122211 0 136778888999999999998765543
No 365
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=90.97 E-value=0.26 Score=52.84 Aligned_cols=122 Identities=14% Similarity=0.255 Sum_probs=78.6
Q ss_pred ccccccccCccccceeeeccCC-C-eEEEEe--ecCCCC-CChhH----HHhhc--ccccccccccccCCCCcccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI-S-VWVMNV--ISIDSP-DTLPI----IYERG--LFGIYHDWCESFSTYPRTYDLLHA 711 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~-~-vwvmnv--~p~~~~-~~l~~----i~eRG--lig~~~~~ce~f~typrtyDl~Ha 711 (796)
..+.|||+|||.|..+=+|..+ + +=+.-| -+.... ++-.+ .-+|- +=+=+..|+.++.. .+||+|=|
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~--~~fD~Ii~ 121 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF--ASFDLIIC 121 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc--cccCEEEe
Confidence 3788999999999766666554 2 333222 111111 11111 22222 12333456666654 46999876
Q ss_pred cccccc---------------ccCCcchHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCCceEEE
Q 003776 712 DHLFSK---------------IKKRCNLVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWEVRM 766 (796)
Q Consensus 712 ~~~~s~---------------~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W~~~~ 766 (796)
+-=|=. +...|.+++++-=-=++|+|||++.+=-..+.+..|-.++++++|...-
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~ 191 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKR 191 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceE
Confidence 654421 2345777888888899999999999887788899999999999999754
No 366
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=90.81 E-value=0.28 Score=50.95 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=19.0
Q ss_pred HHHHHhhcccccCCcEEEEeccHH
Q 003776 725 VAVVAEVDRILRPEGKLIVRDDVE 748 (796)
Q Consensus 725 ~~~l~E~DRiLRP~G~~i~rd~~~ 748 (796)
..+|.|.-=+||+||.++.--++.
T Consensus 163 ~~l~~eyay~l~~gg~~ytitDv~ 186 (249)
T KOG3115|consen 163 STLLSEYAYVLREGGILYTITDVK 186 (249)
T ss_pred hhHHHHHHhhhhcCceEEEEeeHH
Confidence 367889999999999999754443
No 367
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=90.55 E-value=0.21 Score=53.48 Aligned_cols=98 Identities=18% Similarity=0.249 Sum_probs=57.1
Q ss_pred ccccccCccccceeeeccCCCeEE------EEeecCCC-CCChhHHHhhcc-cccccc----c-c---cccCCCCccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWV------MNVISIDS-PDTLPIIYERGL-FGIYHD----W-C---ESFSTYPRTYDL 708 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwv------mnv~p~~~-~~~l~~i~eRGl-ig~~~~----~-c---e~f~typrtyDl 708 (796)
=.+|||.||+|=.|=.++++ |-. =+|+-.|- +.+|.+...|-. -|++-+ | | |.+|+-..+||+
T Consensus 102 m~~lDvaGGTGDiaFril~~-v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~ 180 (296)
T KOG1540|consen 102 MKVLDVAGGTGDIAFRILRH-VKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDA 180 (296)
T ss_pred CeEEEecCCcchhHHHHHHh-hccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCccee
Confidence 45999999999666555432 111 12222232 367776655542 122222 2 2 445533489998
Q ss_pred cccccccccccCCc-chHHHHHhhcccccCCcEEEEeccH
Q 003776 709 LHADHLFSKIKKRC-NLVAVVAEVDRILRPEGKLIVRDDV 747 (796)
Q Consensus 709 ~Ha~~~~s~~~~rC-~~~~~l~E~DRiLRP~G~~i~rd~~ 747 (796)
.--..= ...| .+...|-|+-|||+|||.|.+=+-.
T Consensus 181 yTiafG----IRN~th~~k~l~EAYRVLKpGGrf~cLeFs 216 (296)
T KOG1540|consen 181 YTIAFG----IRNVTHIQKALREAYRVLKPGGRFSCLEFS 216 (296)
T ss_pred EEEecc----eecCCCHHHHHHHHHHhcCCCcEEEEEEcc
Confidence 652221 1223 3678899999999999988875443
No 368
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=90.52 E-value=0.22 Score=49.31 Aligned_cols=48 Identities=13% Similarity=0.210 Sum_probs=35.8
Q ss_pred ccccCCCCccccccccccccccccCCcchHHHHHhhcccccCCcEEEEecc
Q 003776 696 CESFSTYPRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDD 746 (796)
Q Consensus 696 ce~f~typrtyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~ 746 (796)
++.+|.-+.+||+|=+..++..+. ....+|-||-|+|+|||.++|-|-
T Consensus 35 ~~~lp~~~~~fD~v~~~~~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 35 AIDLPFDDCEFDAVTMGYGLRNVV---DRLRAMKEMYRVLKPGSRVSILDF 82 (160)
T ss_pred hhhCCCCCCCeeEEEecchhhcCC---CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 455665457999997666555443 345679999999999999998654
No 369
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=90.41 E-value=0.15 Score=58.90 Aligned_cols=97 Identities=19% Similarity=0.344 Sum_probs=54.6
Q ss_pred ccccccCccccceeeeccCC---CeEEEEeecCCCC-CChhHHHh----hccc---ccccccccccCCCCccccccccc-
Q 003776 645 RNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSP-DTLPIIYE----RGLF---GIYHDWCESFSTYPRTYDLLHAD- 712 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~-~~l~~i~e----RGli---g~~~~~ce~f~typrtyDl~Ha~- 712 (796)
.+|||||||.|+++.+|... +- .|+-+|-. ..+..+-+ .|+- -+-+|.......++++||+|=.+
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~~---~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 328 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNTG---KVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDA 328 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcC
Confidence 57999999999998877653 22 22222332 33333322 2431 12344443333455789998543
Q ss_pred -----ccccc-----cc-CCcch-------HHHHHhhcccccCCcEEEEe
Q 003776 713 -----HLFSK-----IK-KRCNL-------VAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 713 -----~~~s~-----~~-~rC~~-------~~~l~E~DRiLRP~G~~i~r 744 (796)
+++.. |. ..-.+ ..+|-+.=|+|||||.+|+.
T Consensus 329 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys 378 (444)
T PRK14902 329 PCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS 378 (444)
T ss_pred CCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 22221 10 00111 35788899999999999975
No 370
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=90.23 E-value=0.13 Score=55.45 Aligned_cols=100 Identities=12% Similarity=0.161 Sum_probs=54.2
Q ss_pred cccccccccCccccceeeeccCCC-eEEEEeecCCCC-CChhHHHhh-----c-----ccccc-cccccccCCCCccccc
Q 003776 642 STVRNVMDMRSVYGGFAAAMKDIS-VWVMNVISIDSP-DTLPIIYER-----G-----LFGIY-HDWCESFSTYPRTYDL 708 (796)
Q Consensus 642 ~~iRnvmDm~~g~g~faA~l~~~~-vwvmnv~p~~~~-~~l~~i~eR-----G-----lig~~-~~~ce~f~typrtyDl 708 (796)
..-|+||++|||.|+++..++.++ + .+|+-++.. .-+..+-+. | -+-+. .|-.+-+...+++||+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~--~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSV--EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCc--ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE
Confidence 456799999999999998887664 3 223333332 222221111 1 01111 1222212233678999
Q ss_pred cccccccccccCCcc--hHHHHHhhcccccCCcEEEEe
Q 003776 709 LHADHLFSKIKKRCN--LVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 709 ~Ha~~~~s~~~~rC~--~~~~l~E~DRiLRP~G~~i~r 744 (796)
|=.+... .+...-. ...++-.+-|+|+|||.+++.
T Consensus 149 Ii~D~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 149 IIVDSTD-PVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEEeCCC-CCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 8655432 1211111 234556788999999999985
No 371
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=90.03 E-value=0.15 Score=53.48 Aligned_cols=94 Identities=11% Similarity=0.038 Sum_probs=52.3
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCCC-CChh-HHHhhcccccc--------------cccccccCCC---C-cc
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLP-IIYERGLFGIY--------------HDWCESFSTY---P-RT 705 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~-~i~eRGlig~~--------------~~~ce~f~ty---p-rt 705 (796)
.|||.|||.|--|.+|.++..=| +-+|-. .-+. ++-++|+.... +-+|.-|..+ + -+
T Consensus 40 rvL~~gCG~G~da~~LA~~G~~V---~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~ 116 (218)
T PRK13255 40 RVLVPLCGKSLDMLWLAEQGHEV---LGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLAD 116 (218)
T ss_pred eEEEeCCCChHhHHHHHhCCCeE---EEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCC
Confidence 69999999999999999875433 333322 1122 24466664221 1122211111 1 24
Q ss_pred ccccccccccccccCCcchHHHHHhhcccccCCcEEEE
Q 003776 706 YDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIV 743 (796)
Q Consensus 706 yDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~ 743 (796)
||+|-...+|... ....-..++-.|-|+|+|||.+++
T Consensus 117 fd~v~D~~~~~~l-~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 117 VDAVYDRAALIAL-PEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred eeEEEehHhHhhC-CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 5555543333322 222335778999999999996443
No 372
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=89.84 E-value=0.55 Score=54.14 Aligned_cols=39 Identities=18% Similarity=0.503 Sum_probs=26.4
Q ss_pred HHHHHhhcccccCCcEEEEec----cHHHHHHHHHHHhcC-Cce
Q 003776 725 VAVVAEVDRILRPEGKLIVRD----DVETINELESMVKGM-QWE 763 (796)
Q Consensus 725 ~~~l~E~DRiLRP~G~~i~rd----~~~~~~~~~~~~~~l-~W~ 763 (796)
..||-++=|+|||||++|+.. ..+....|..+++.. .|+
T Consensus 364 ~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~ 407 (434)
T PRK14901 364 AELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWK 407 (434)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcE
Confidence 578899999999999999762 223445566655443 354
No 373
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=89.79 E-value=1.1 Score=47.95 Aligned_cols=83 Identities=19% Similarity=0.233 Sum_probs=53.7
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER 446 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~ 446 (796)
.++++.+...++ ...+|||||||.=-++...... .++|+||+..++..-. .+....+++....+.|...
T Consensus 93 d~fY~~if~~~~------~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~-~~l~~l~~~~~~~v~Dl~~ 165 (251)
T PF07091_consen 93 DEFYDEIFGRIP------PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLN-AFLAVLGVPHDARVRDLLS 165 (251)
T ss_dssp HHHHHHHCCCS---------SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHH-HHHHHTT-CEEEEEE-TTT
T ss_pred HHHHHHHHhcCC------CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHH-HHHHhhCCCcceeEeeeec
Confidence 444555544443 3789999999999888876653 7999999997765554 4555567777777776433
Q ss_pred CCCCCCceeEEEEcC
Q 003776 447 LPFPGIVFDAVHCAR 461 (796)
Q Consensus 447 LPfpd~SFDlVvss~ 461 (796)
-+ +....|+++..-
T Consensus 166 ~~-~~~~~DlaLllK 179 (251)
T PF07091_consen 166 DP-PKEPADLALLLK 179 (251)
T ss_dssp SH-TTSEESEEEEET
T ss_pred cC-CCCCcchhhHHH
Confidence 22 346799998854
No 374
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=89.63 E-value=0.79 Score=53.51 Aligned_cols=113 Identities=17% Similarity=0.110 Sum_probs=71.7
Q ss_pred HHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh------C--CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCC
Q 003776 375 DFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD------R--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER 446 (796)
Q Consensus 375 d~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~------~--~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~ 446 (796)
..|.+++|.-. .+...+|+-+|+|.|-+..+.++ + .+++++-.|..+..-+...-..-.-.+.++-.|+..
T Consensus 354 ~AL~Drvpd~~-a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~ 432 (649)
T KOG0822|consen 354 KALLDRVPDES-AKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRK 432 (649)
T ss_pred HHHHhhCcccc-cCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccc
Confidence 33444444422 12256789999999977665544 2 688898888655433321111122345667778888
Q ss_pred CCCCCCceeEEEEcCCCcccccch-HHHHHHHHhhcCCCcEEE
Q 003776 447 LPFPGIVFDAVHCARCRVPWHIEG-GKLLLELNRVLRPGGFFI 488 (796)
Q Consensus 447 LPfpd~SFDlVvss~~~l~w~~d~-~~~L~Ei~RVLKPGG~fv 488 (796)
++-|....|++++-+..-.-...+ +.+|.-+.+.|||+|..|
T Consensus 433 w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 433 WNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred cCCchhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 875568899999854111112233 799999999999999887
No 375
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=89.53 E-value=0.31 Score=56.00 Aligned_cols=97 Identities=22% Similarity=0.311 Sum_probs=53.7
Q ss_pred ccccccCccccceeeeccCC--CeEEEEeecCCCC-CChhHH---Hhh-cc-c-ccccccccccCCC-Cccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSP-DTLPII---YER-GL-F-GIYHDWCESFSTY-PRTYDLLHADHL 714 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~-~~l~~i---~eR-Gl-i-g~~~~~ce~f~ty-prtyDl~Ha~~~ 714 (796)
..|||+|||.|+++.+|... +.- |+-.|.. ..+..+ +.| |+ + =+.+|.......+ +.+||+|=.+--
T Consensus 246 ~~VLDlgaG~G~~t~~la~~~~~~~---v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILELAPQAQ---VVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CEEEEeCCCCChHHHHHHHHcCCCE---EEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 46999999999999887653 112 2333332 333322 222 32 1 1223443322222 367999874442
Q ss_pred ccc-----------ccCC--------cchHHHHHhhcccccCCcEEEEe
Q 003776 715 FSK-----------IKKR--------CNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 715 ~s~-----------~~~r--------C~~~~~l~E~DRiLRP~G~~i~r 744 (796)
++. |... .....+|-..=|+|+|||+++++
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvys 371 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYA 371 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 221 1000 11236788999999999999986
No 376
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=89.50 E-value=0.13 Score=57.08 Aligned_cols=88 Identities=19% Similarity=0.176 Sum_probs=46.7
Q ss_pred ccccccCccccceeeeccCC---CeEEEEeecCCCCCChhH----HHhhcc---cccccccccccCCCCccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSPDTLPI----IYERGL---FGIYHDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~~~l~~----i~eRGl---ig~~~~~ce~f~typrtyDl~Ha~~~ 714 (796)
-.|||+|||.|.+++.|... .-.|+.|-... .-+.. +-..|+ .=+..|..+..+. ...||+|..+.
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~--~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~-~~~fD~Ii~~~- 157 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSR--KICEIAKRNVRRLGIENVIFVCGDGYYGVPE-FAPYDVIFVTV- 157 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCH--HHHHHHHHHHHHcCCCcEEEEeCChhhcccc-cCCccEEEECC-
Confidence 36999999999999888642 11222222211 22221 222343 1122333332222 24699988542
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
.+..+.-.+-|+|+|||.+++-
T Consensus 158 --------g~~~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 158 --------GVDEVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred --------chHHhHHHHHHhcCCCCEEEEE
Confidence 2223333456799999998874
No 377
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=89.04 E-value=0.66 Score=52.06 Aligned_cols=69 Identities=10% Similarity=0.178 Sum_probs=48.9
Q ss_pred ccccCcccccCCCCccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh------------CCeEEEeC
Q 003776 350 VKVTGEYLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD------------RGVLTMSF 417 (796)
Q Consensus 350 ~~~~g~~~~Fpgggt~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~------------~~V~gvDi 417 (796)
....|++++-|.-+..|......+.-.+.+.+.. +....+++||.|+|.++.-|++ ..+..+++
T Consensus 42 ~G~~GDFiTApels~lFGella~~~~~~wq~~g~----p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~ 117 (370)
T COG1565 42 IGRKGDFITAPELSQLFGELLAEQFLQLWQELGR----PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEP 117 (370)
T ss_pred ccccCCeeechhHHHHHHHHHHHHHHHHHHHhcC----CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEec
Confidence 3445677777777778877666665444444432 3466899999999998887764 16888999
Q ss_pred ChhhH
Q 003776 418 APKDE 422 (796)
Q Consensus 418 Sp~dl 422 (796)
|+...
T Consensus 118 s~~L~ 122 (370)
T COG1565 118 SPELR 122 (370)
T ss_pred CHHHH
Confidence 99543
No 378
>PRK00811 spermidine synthase; Provisional
Probab=88.76 E-value=0.18 Score=54.87 Aligned_cols=100 Identities=12% Similarity=0.175 Sum_probs=55.3
Q ss_pred cccccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhh------cc-----cc-cccccccccCCCCcccc
Q 003776 642 STVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYER------GL-----FG-IYHDWCESFSTYPRTYD 707 (796)
Q Consensus 642 ~~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eR------Gl-----ig-~~~~~ce~f~typrtyD 707 (796)
..-++||++|||.|+++..++++ ++- +|+-++-- ..+.++-+. |+ +- +..|-..-+..-+.+||
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~--~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVE--KITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCC--EEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence 45789999999999999988876 443 33333332 222222111 11 11 12222221222346899
Q ss_pred ccccccccccccCCcc--hHHHHHhhcccccCCcEEEEe
Q 003776 708 LLHADHLFSKIKKRCN--LVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 708 l~Ha~~~~s~~~~rC~--~~~~l~E~DRiLRP~G~~i~r 744 (796)
+|=.+. +..+..-=. -..++-.+-|+|+|||.+++.
T Consensus 153 vIi~D~-~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 153 VIIVDS-TDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEEECC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 986542 222211001 134566889999999999985
No 379
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=88.49 E-value=1.2 Score=46.48 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=24.3
Q ss_pred CCEEEEECCCCchhHHHHhhC----CeEEEeCCh
Q 003776 390 TRVVLDVGCGVASFGGFLFDR----GVLTMSFAP 419 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp 419 (796)
.-.+.|||||.|.+...|+.. -++|++|--
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~ 94 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRD 94 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhH
Confidence 346899999999999988875 688887744
No 380
>PRK01581 speE spermidine synthase; Validated
Probab=88.31 E-value=0.21 Score=56.30 Aligned_cols=140 Identities=12% Similarity=0.075 Sum_probs=72.4
Q ss_pred cccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHh--------hc------ccccccccccccCCCCccc
Q 003776 642 STVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYE--------RG------LFGIYHDWCESFSTYPRTY 706 (796)
Q Consensus 642 ~~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~e--------RG------lig~~~~~ce~f~typrty 706 (796)
..-|+||++|||.|+.+..++.++- +.+|+-++-- .-+.++-. +| +--++.|-.+-+..-++.|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~-v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYET-VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 4578999999999998888887641 1233333332 22332222 11 1112223222223335689
Q ss_pred cccccccccccccCC---cchHHHHHhhcccccCCcEEEEecc-----HHHHHHHHHHH-hcCCceEEEee---ccC-Cc
Q 003776 707 DLLHADHLFSKIKKR---CNLVAVVAEVDRILRPEGKLIVRDD-----VETINELESMV-KGMQWEVRMTY---SKD-KE 773 (796)
Q Consensus 707 Dl~Ha~~~~s~~~~r---C~~~~~l~E~DRiLRP~G~~i~rd~-----~~~~~~~~~~~-~~l~W~~~~~~---~~~-~e 773 (796)
|+|=.+- +...... ---..++-.+-|+|+|||.+++... ..++..+.+.+ +...|...... +-+ .=
T Consensus 228 DVIIvDl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~W 306 (374)
T PRK01581 228 DVIIIDF-PDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDW 306 (374)
T ss_pred cEEEEcC-CCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCce
Confidence 9988762 2221111 1113467788999999999988633 22323333333 34444433321 111 13
Q ss_pred eEEEEEeccc
Q 003776 774 GLLCVEKSMW 783 (796)
Q Consensus 774 ~~l~~~K~~w 783 (796)
.++++.|...
T Consensus 307 gF~~as~~~~ 316 (374)
T PRK01581 307 GFHIAANSAY 316 (374)
T ss_pred EEEEEeCCcc
Confidence 5777777544
No 381
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=88.25 E-value=0.45 Score=54.99 Aligned_cols=95 Identities=20% Similarity=0.271 Sum_probs=51.4
Q ss_pred ccccccCccccceeeeccCC---CeEEEEeecCCCC-CChhHH---H-hhcc---cccccccccccCCCCccccccccc-
Q 003776 645 RNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSP-DTLPII---Y-ERGL---FGIYHDWCESFSTYPRTYDLLHAD- 712 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~-~~l~~i---~-eRGl---ig~~~~~ce~f~typrtyDl~Ha~- 712 (796)
..|||++||.|+++.+|... .- .|+-+|.. .-+..+ + ..|+ --+.+|.....+ +.+||+|=.+
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~---~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~--~~~fD~Vl~D~ 326 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRG---QITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP--EEQPDAILLDA 326 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc--CCCCCEEEEcC
Confidence 46999999999987665431 11 22233333 233222 2 2343 122234332221 3579988643
Q ss_pred -----ccccc-----cc-CCcch-------HHHHHhhcccccCCcEEEEe
Q 003776 713 -----HLFSK-----IK-KRCNL-------VAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 713 -----~~~s~-----~~-~rC~~-------~~~l~E~DRiLRP~G~~i~r 744 (796)
++|.. |. ..-.+ ..||-++=|+|||||.+++.
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvys 376 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYA 376 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 22211 11 00111 35899999999999999997
No 382
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=88.22 E-value=4.3 Score=45.85 Aligned_cols=120 Identities=19% Similarity=0.213 Sum_probs=68.8
Q ss_pred HHHHhCccccc-CCCCCEEEEECCCCchhHHHHhhC--------CeEEEeCChhhHHHHHHHHHHHcCCCe-EEEEcCCC
Q 003776 376 FIQESVPDVAW-GKRTRVVLDVGCGVASFGGFLFDR--------GVLTMSFAPKDEHEAQVQFALERGIPA-ISAVMGTE 445 (796)
Q Consensus 376 ~L~e~Lp~i~~-~~~~~~VLDIGCGtG~~a~~La~~--------~V~gvDiSp~dl~~A~~q~A~ergl~~-~~~v~d~e 445 (796)
....++|.+.. .+++.+|||+-+..|+=++.|++. .|++=|+++.-++.-..+. .....+. .....+..
T Consensus 141 eavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~-~~l~~~~~~v~~~~~~ 219 (375)
T KOG2198|consen 141 EAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQL-KRLPSPNLLVTNHDAS 219 (375)
T ss_pred hhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHH-hccCCcceeeecccce
Confidence 34555655433 267899999999999888777652 5777788776554443333 2111111 11111111
Q ss_pred CC---------CCCCCceeEEEEc-CCC---cc----------ccc----c----hHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 446 RL---------PFPGIVFDAVHCA-RCR---VP----------WHI----E----GGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 446 ~L---------Pfpd~SFDlVvss-~~~---l~----------w~~----d----~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
.. +.....||-|+|- .|. .+ |.. + ...+|+.-.|+|||||.++.|+...
T Consensus 220 ~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 220 LFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred eccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 11 2344579999872 110 00 100 0 1257788889999999999986644
Q ss_pred CC
Q 003776 495 YQ 496 (796)
Q Consensus 495 ~~ 496 (796)
..
T Consensus 300 np 301 (375)
T KOG2198|consen 300 NP 301 (375)
T ss_pred Cc
Confidence 33
No 383
>PLN02366 spermidine synthase
Probab=87.77 E-value=0.25 Score=54.57 Aligned_cols=101 Identities=22% Similarity=0.276 Sum_probs=54.6
Q ss_pred cccccccccCccccceeeeccCCC-eEEEEeecCCCC------CChhHHHhhcc----cc-cccccccccCCC-Cccccc
Q 003776 642 STVRNVMDMRSVYGGFAAAMKDIS-VWVMNVISIDSP------DTLPIIYERGL----FG-IYHDWCESFSTY-PRTYDL 708 (796)
Q Consensus 642 ~~iRnvmDm~~g~g~faA~l~~~~-vwvmnv~p~~~~------~~l~~i~eRGl----ig-~~~~~ce~f~ty-prtyDl 708 (796)
...++||++|||.|+.+..|.+++ |.-+-+|=.|.. ..++.+ ..|+ +- +..|=.+-.... ++.||+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~-~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDL-AVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhh-ccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 457899999999999999998774 432222222210 111111 0111 11 112211111222 468999
Q ss_pred cccccccccccCCcch--HHHHHhhcccccCCcEEEEe
Q 003776 709 LHADHLFSKIKKRCNL--VAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 709 ~Ha~~~~s~~~~rC~~--~~~l~E~DRiLRP~G~~i~r 744 (796)
|-.+. +......-.+ ..++-.+-|.|+|||.+++.
T Consensus 169 Ii~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDS-SDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 98653 3333221111 34567889999999999873
No 384
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=87.69 E-value=0.54 Score=50.52 Aligned_cols=95 Identities=17% Similarity=0.265 Sum_probs=51.1
Q ss_pred cccccCccccceeeeccCC---CeEEEEeecCCCC-CChhHH---Hhh-cc--cccc-cccccccCCCCccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSP-DTLPII---YER-GL--FGIY-HDWCESFSTYPRTYDLLHADHL 714 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~-~~l~~i---~eR-Gl--ig~~-~~~ce~f~typrtyDl~Ha~~~ 714 (796)
.||||+||.|+++.+|... .-- |+-.|.. .-+..+ ++| |+ |-++ +|. ..++.....||.|-.+-=
T Consensus 74 ~VLDl~ag~G~kt~~la~~~~~~g~---v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~-~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 74 RVLDMAAAPGGKTTQISALMKNEGA---IVANEFSKSRTKVLIANINRCGVLNVAVTNFDG-RVFGAAVPKFDAILLDAP 149 (264)
T ss_pred EEEEECCCchHHHHHHHHHcCCCCE---EEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCH-HHhhhhccCCCEEEEcCC
Confidence 5999999999998766432 112 3333433 333322 222 33 1122 222 223333345888864432
Q ss_pred cccc-------------cCC-c-----chHHHHHhhcccccCCcEEEEe
Q 003776 715 FSKI-------------KKR-C-----NLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 715 ~s~~-------------~~r-C-----~~~~~l~E~DRiLRP~G~~i~r 744 (796)
.|.. ..+ . ....||-.+=|+|||||++|.+
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 2211 000 0 1135888899999999999986
No 385
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=87.44 E-value=0.4 Score=50.80 Aligned_cols=111 Identities=20% Similarity=0.170 Sum_probs=69.8
Q ss_pred ccccccCccccceeeeccCC--CeEEEEeecCCCC--CChhHHHhhcc--cccc-cccccccCCCC-c-ccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI--SVWVMNVISIDSP--DTLPIIYERGL--FGIY-HDWCESFSTYP-R-TYDLLHADHLF 715 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~--~vwvmnv~p~~~~--~~l~~i~eRGl--ig~~-~~~ce~f~typ-r-tyDl~Ha~~~~ 715 (796)
..+|++|||.|.|-+.|... .+-.+-|-+...- .-+.-|-+.|| |-++ ||=-+-+..++ . +.|-|+ -.|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~--i~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIY--INF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEE--EEC
Confidence 37899999999999988654 2333444443332 45556778887 4444 23233333333 3 788877 334
Q ss_pred c-ccc-----CCcch-HHHHHhhcccccCCcEEEEe-ccHHHHHH-HHHHH
Q 003776 716 S-KIK-----KRCNL-VAVVAEVDRILRPEGKLIVR-DDVETINE-LESMV 757 (796)
Q Consensus 716 s-~~~-----~rC~~-~~~l~E~DRiLRP~G~~i~r-d~~~~~~~-~~~~~ 757 (796)
. .|- +|=.+ ...|-++-|+|+|||.+.+. |...+.+. +...+
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~ 178 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVL 178 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHH
Confidence 3 452 23233 57788999999999999996 55556555 55544
No 386
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=87.24 E-value=0.74 Score=47.99 Aligned_cols=132 Identities=21% Similarity=0.302 Sum_probs=80.6
Q ss_pred cccccCccccceeeeccCC-CeEEEEeecCCCCCCh-h----HHHhhcc----cccccccccc-------cCCCCccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSPDTL-P----IIYERGL----FGIYHDWCES-------FSTYPRTYDL 708 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~~~l-~----~i~eRGl----ig~~~~~ce~-------f~typrtyDl 708 (796)
.||.+|+|+|--|+++... |- +-.-|+|-...+ . -|.+.|+ .++.-|-+.+ -+.++..||+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~--l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPH--LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCC--CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 6999999999876666432 32 234577766333 3 2445564 3333333333 2335789998
Q ss_pred cccccccccccCCcchHHHHHhhcccccCCcEEEEe------------------------cc---HHHHHHHHHHHhcCC
Q 003776 709 LHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR------------------------DD---VETINELESMVKGMQ 761 (796)
Q Consensus 709 ~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r------------------------d~---~~~~~~~~~~~~~l~ 761 (796)
|-+..++-. .+.-...-+|-..-|+|+|||.+++- |- ..-++.|..+|..-.
T Consensus 106 i~~~N~lHI-~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 106 IFCINMLHI-SPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred eeehhHHHh-cCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 876665532 22223467899999999999999972 10 013567888887766
Q ss_pred ceEEEe-eccCCceEEEEEe
Q 003776 762 WEVRMT-YSKDKEGLLCVEK 780 (796)
Q Consensus 762 W~~~~~-~~~~~e~~l~~~K 780 (796)
+...-. +=--...+||++|
T Consensus 185 L~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 185 LELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CccCcccccCCCCeEEEEeC
Confidence 654321 1112468999987
No 387
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=87.21 E-value=1.4 Score=45.52 Aligned_cols=89 Identities=22% Similarity=0.249 Sum_probs=54.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEc-CC----------CCCCCCC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVM-GT----------ERLPFPG 451 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~-d~----------e~LPfpd 451 (796)
.++.+|||+||.+|+++.-..++ -|.|+|+-... .-.|.. ++.+ |. +. +|+
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~---------p~~Ga~--~i~~~dvtdp~~~~ki~e~--lp~ 134 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE---------PPEGAT--IIQGNDVTDPETYRKIFEA--LPN 134 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc---------CCCCcc--cccccccCCHHHHHHHHHh--CCC
Confidence 46889999999999999888775 58888873311 112221 1111 21 22 356
Q ss_pred CceeEEEEcCCCccccc-----chH-------HHHHHHHhhcCCCcEEEEEe
Q 003776 452 IVFDAVHCARCRVPWHI-----EGG-------KLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 452 ~SFDlVvss~~~l~w~~-----d~~-------~~L~Ei~RVLKPGG~fv~s~ 491 (796)
...|+|+|-+ .+... |.. .+|.-....|+|+|.|+.-.
T Consensus 135 r~VdvVlSDM--apnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~ 184 (232)
T KOG4589|consen 135 RPVDVVLSDM--APNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL 184 (232)
T ss_pred CcccEEEecc--CCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 7899999965 22211 111 23333446688999999753
No 388
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=86.82 E-value=0.45 Score=54.92 Aligned_cols=96 Identities=17% Similarity=0.266 Sum_probs=53.2
Q ss_pred ccccccCccccceeeeccCC---CeEEEEeecCCCC-CChhHHH---hh-ccc---ccccccccccC-CCCccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI---SVWVMNVISIDSP-DTLPIIY---ER-GLF---GIYHDWCESFS-TYPRTYDLLHAD 712 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~---~vwvmnv~p~~~~-~~l~~i~---eR-Gli---g~~~~~ce~f~-typrtyDl~Ha~ 712 (796)
..||||+||.||.+.+|... .- .|+-.|-. .-|..+- +| |+- -+.+|... ++ ..+..||+|=++
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~g---~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~-l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQG---KILAVDISREKIQLVEKHAKRLKLSSIEIKIADAER-LTEYVQDTFDRILVD 314 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhh-hhhhhhccCCEEEEC
Confidence 46999999999988766542 22 23333433 3444332 22 431 22334432 23 224679998654
Q ss_pred ccccccc---CC--------------c--chHHHHHhhcccccCCcEEEEe
Q 003776 713 HLFSKIK---KR--------------C--NLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 713 ~~~s~~~---~r--------------C--~~~~~l~E~DRiLRP~G~~i~r 744 (796)
---|... .+ + .-..||-..=++|+|||+++++
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs 365 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYS 365 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3222111 00 0 1135688888999999999986
No 389
>PLN03075 nicotianamine synthase; Provisional
Probab=86.81 E-value=0.44 Score=52.34 Aligned_cols=137 Identities=12% Similarity=0.080 Sum_probs=71.6
Q ss_pred ccccccccCccccceeeeccC----CCeEEEEeecCCCCCCh-hHHH--hhcccc----cccccccccCCCCcccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKD----ISVWVMNVISIDSPDTL-PIIY--ERGLFG----IYHDWCESFSTYPRTYDLLHA 711 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~----~~vwvmnv~p~~~~~~l-~~i~--eRGlig----~~~~~ce~f~typrtyDl~Ha 711 (796)
.-+.|+|+|||-|++.|.++- ...-+.|+-.......+ .-.+ +.||=. ..+|..+..+ ....||+|-+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~-~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE-SLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc-ccCCcCEEEE
Confidence 568899999998877554432 22333444332222111 1112 233311 1233333221 1367999986
Q ss_pred ccccccccCCcchHHHHHhhcccccCCcEEEEecc---HHHHHHHHHHHhcCCceEEEeeccCC---ceEEEEEecc
Q 003776 712 DHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDD---VETINELESMVKGMQWEVRMTYSKDK---EGLLCVEKSM 782 (796)
Q Consensus 712 ~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~---~~~~~~~~~~~~~l~W~~~~~~~~~~---e~~l~~~K~~ 782 (796)
. .+-.+ .+=.-..+|-.+=|.|||||++++|-- ..++-.+-....-=.|++....|-.. .-+++++|.-
T Consensus 202 ~-ALi~~-dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~~~~~P~~~v~Nsvi~~r~~~ 276 (296)
T PLN03075 202 A-ALVGM-DKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVLSVFHPTDEVINSVIIARKPG 276 (296)
T ss_pred e-ccccc-ccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEEEEECCCCCceeeEEEEEeec
Confidence 6 33222 112235678888999999999999841 11221111111111788766644332 4588888865
No 390
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=86.15 E-value=0.54 Score=47.37 Aligned_cols=97 Identities=23% Similarity=0.337 Sum_probs=52.6
Q ss_pred cccccccccCcccc--ceeeeccCCCeEEEEeecCCCCCChh---HHHhh------c-cccccccccccc--CC-CCccc
Q 003776 642 STVRNVMDMRSVYG--GFAAAMKDISVWVMNVISIDSPDTLP---IIYER------G-LFGIYHDWCESF--ST-YPRTY 706 (796)
Q Consensus 642 ~~iRnvmDm~~g~g--~faA~l~~~~vwvmnv~p~~~~~~l~---~i~eR------G-lig~~~~~ce~f--~t-yprty 706 (796)
.+-++||..|||.| |++|+... ....|+-+|.+..|+ .-.++ + +--...+|.+.. .. -++.|
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~---~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLF---GAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT----T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred cCCceEEEECCccchhHHHHHhcc---CCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 35678999999988 77777761 123344445443333 22222 2 344567898754 11 14689
Q ss_pred cccccccccccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 707 DLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 707 Dl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
|+|-|+.|+=.. =.+..++-=+.++|.|+|-+++.
T Consensus 121 D~IlasDv~Y~~---~~~~~L~~tl~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 121 DVILASDVLYDE---ELFEPLVRTLKRLLKPNGKVLLA 155 (173)
T ss_dssp SEEEEES--S-G---GGHHHHHHHHHHHBTT-TTEEEE
T ss_pred CEEEEecccchH---HHHHHHHHHHHHHhCCCCEEEEE
Confidence 999987766432 23456666689999999998874
No 391
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=85.96 E-value=0.93 Score=59.01 Aligned_cols=22 Identities=32% Similarity=0.655 Sum_probs=11.5
Q ss_pred HHHHHHhhccccc---ceeeeccccc
Q 003776 618 FTADYEHWKRVVS---KSYLNGMGIN 640 (796)
Q Consensus 618 F~eD~e~Wk~rV~---~tY~~~lgi~ 640 (796)
|.+| +.|.+||. .+|++.+.++
T Consensus 4376 fkkd-kiwmrr~kpskr~yqvmisid 4400 (4600)
T COG5271 4376 FKKD-KIWMRRVKPSKRTYQVMISID 4400 (4600)
T ss_pred hccc-ceeeeecCCccceeEEEEEec
Confidence 4433 56766654 2466655543
No 392
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=85.50 E-value=1.9 Score=45.84 Aligned_cols=111 Identities=14% Similarity=0.159 Sum_probs=63.6
Q ss_pred ccccCCCCc-cccccHHHHHHHHHHhCccccc--CCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHH
Q 003776 356 YLTFPGGGT-QFKNGALHYIDFIQESVPDVAW--GKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQ 428 (796)
Q Consensus 356 ~~~Fpgggt-~F~~~a~~yid~L~e~Lp~i~~--~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q 428 (796)
+|.||.+-- .-.+++..|+..|.++|..-.. .++..++||||.|.-.+-..|--+ +.+|.|+++..++.|+.-
T Consensus 42 ~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~i 121 (292)
T COG3129 42 YWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAI 121 (292)
T ss_pred EecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHH
Confidence 344554421 1235667888777777654221 134568999998876443333222 789999999888888755
Q ss_pred HHHHcCCCe--EEEEc-CCCC----CCCCCCceeEEEEcCCCcccc
Q 003776 429 FALERGIPA--ISAVM-GTER----LPFPGIVFDAVHCARCRVPWH 467 (796)
Q Consensus 429 ~A~ergl~~--~~~v~-d~e~----LPfpd~SFDlVvss~~~l~w~ 467 (796)
.....++.. .+... +... +--..+.||++.|+.. +|-+
T Consensus 122 i~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPP-Fh~s 166 (292)
T COG3129 122 ISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPP-FHDS 166 (292)
T ss_pred HHcCcchhhheeEEeccCccccccccccccceeeeEecCCC-cchh
Confidence 544434432 22222 1111 1123578999999974 4433
No 393
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=85.39 E-value=0.63 Score=46.84 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=33.2
Q ss_pred CCceeEEEEcCCCccccc---------ch---HHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 003776 451 GIVFDAVHCARCRVPWHI---------EG---GKLLLELNRVLRPGGFFIWSATPVYQK 497 (796)
Q Consensus 451 d~SFDlVvss~~~l~w~~---------d~---~~~L~Ei~RVLKPGG~fv~s~~~~~~~ 497 (796)
.++||.+.|..+ + .|. |+ ...+.++.++|||||.|++++|.+.+.
T Consensus 61 ~~~fD~~as~~s-i-Eh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~ 117 (177)
T PF03269_consen 61 AGSFDFAASFSS-I-EHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDA 117 (177)
T ss_pred hccchhhheech-h-ccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcc
Confidence 367999888542 3 222 22 478889999999999999998877654
No 394
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=84.89 E-value=11 Score=44.55 Aligned_cols=118 Identities=18% Similarity=0.111 Sum_probs=72.7
Q ss_pred HHHHHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhh--------CCeEEEeCChhhHHHHHHHHHHHcCCC--eEEE
Q 003776 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD--------RGVLTMSFAPKDEHEAQVQFALERGIP--AISA 440 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~--------~~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~ 440 (796)
.+.+.+|.+.+.. .+..+|+|-.||+|++.....+ ..+.|.++.+.....++..... +|+. +...
T Consensus 172 ~~v~~liv~~l~~----~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~l-hgi~~~~~i~ 246 (489)
T COG0286 172 REVSELIVELLDP----EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLIL-HGIEGDANIR 246 (489)
T ss_pred HHHHHHHHHHcCC----CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHH-hCCCcccccc
Confidence 4556777777654 3456999999999976554332 2478889888777666644443 3444 2333
Q ss_pred EcCCCCCC-C----CCCceeEEEEcCCC--cccccc----------------------hHHHHHHHHhhcCCCcEEEEEe
Q 003776 441 VMGTERLP-F----PGIVFDAVHCARCR--VPWHIE----------------------GGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 441 v~d~e~LP-f----pd~SFDlVvss~~~--l~w~~d----------------------~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
..+...-| + ....||+|+++... ..|... ...++..+.+.|+|||+..+..
T Consensus 247 ~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl 326 (489)
T COG0286 247 HGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL 326 (489)
T ss_pred ccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence 33332222 2 34679999997632 122211 1367888999999999666554
Q ss_pred CC
Q 003776 492 TP 493 (796)
Q Consensus 492 ~~ 493 (796)
+.
T Consensus 327 ~~ 328 (489)
T COG0286 327 PD 328 (489)
T ss_pred cC
Confidence 43
No 395
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=84.86 E-value=3.9 Score=44.08 Aligned_cols=91 Identities=16% Similarity=0.203 Sum_probs=55.7
Q ss_pred CCCCEEEEECCC-CchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCC---CC-CCCCCceeEEEE
Q 003776 388 KRTRVVLDVGCG-VASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTE---RL-PFPGIVFDAVHC 459 (796)
Q Consensus 388 ~~~~~VLDIGCG-tG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e---~L-Pfpd~SFDlVvs 459 (796)
..+.+||..|+| .|.++..++++ +|++++.++... +.+++.|+...+...... .+ ....+.+|+|+.
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid 238 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKL-----ELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFD 238 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHH-----HHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEE
Confidence 346788888876 46676666664 677777766432 344445553222111100 00 123457999986
Q ss_pred cCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 460 ARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 460 s~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
... ....+.++.+.|+++|.|+..
T Consensus 239 ~~g-------~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 239 FVG-------TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred CCC-------CHHHHHHHHHHhhcCCEEEEE
Confidence 431 246788999999999999965
No 396
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=84.66 E-value=0.81 Score=50.73 Aligned_cols=93 Identities=12% Similarity=0.141 Sum_probs=51.5
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhcc-c------cccccc-ccccCCCCcccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERGL-F------GIYHDW-CESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGl-i------g~~~~~-ce~f~typrtyDl~Ha~~~~ 715 (796)
..|||+|||.|.++..|..+.. +|+-+|-. .-|.++-+|.- . +...+| +..+...+.+||+|=+.+++
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~vL 222 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDVL 222 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCEE
Confidence 3699999999999999987642 44555554 55555555421 0 111111 12233346889998776666
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEE
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLI 742 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i 742 (796)
-.+... .+..++-.+-++ .|||.+|
T Consensus 223 ~H~p~~-~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 223 IHYPQD-KADGMIAHLASL-AEKRLII 247 (315)
T ss_pred EecCHH-HHHHHHHHHHhh-cCCEEEE
Confidence 544321 122344445443 4555544
No 397
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=84.63 E-value=2.9 Score=44.74 Aligned_cols=109 Identities=19% Similarity=0.231 Sum_probs=68.0
Q ss_pred HHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC-----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCC-
Q 003776 375 DFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP- 448 (796)
Q Consensus 375 d~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LP- 448 (796)
+.|.--+.+| +.+++.+||=||++.|+...+...- -|+++++++..- ...+..|.+| .+++-++-|+ +.|
T Consensus 143 A~I~gGvdni-hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsG-RdL~nmAkkR-tNiiPIiEDA-rhP~ 218 (317)
T KOG1596|consen 143 AGILGGVDNI-HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSG-RDLINMAKKR-TNIIPIIEDA-RHPA 218 (317)
T ss_pred HHhhcCccce-eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccch-HHHHHHhhcc-CCceeeeccC-CCch
Confidence 3343334433 2357899999999999877777653 689999987432 2233445544 2333344443 233
Q ss_pred ---CCCCceeEEEEcCCCcccccch-HHHHHHHHhhcCCCcEEEEEe
Q 003776 449 ---FPGIVFDAVHCARCRVPWHIEG-GKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 449 ---fpd~SFDlVvss~~~l~w~~d~-~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
+.-...|+|++-. . +++. ..+.......||+||.|+++.
T Consensus 219 KYRmlVgmVDvIFaDv---a-qpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 219 KYRMLVGMVDVIFADV---A-QPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred heeeeeeeEEEEeccC---C-CchhhhhhhhhhhhhhccCCeEEEEE
Confidence 1224688888754 2 2333 455667889999999999884
No 398
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=84.50 E-value=0.51 Score=44.53 Aligned_cols=37 Identities=24% Similarity=0.658 Sum_probs=27.4
Q ss_pred ceeEEEEcCCCcccc-c---c--hHHHHHHHHhhcCCCcEEEEE
Q 003776 453 VFDAVHCARCRVPWH-I---E--GGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 453 SFDlVvss~~~l~w~-~---d--~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.||+|+|.. ..-|. . | +..+|+.+++.|+|||+|++.
T Consensus 1 ~yDvilclS-VtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLS-VTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEE-eeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 389999953 34442 2 2 257899999999999999987
No 399
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=84.43 E-value=4.6 Score=44.44 Aligned_cols=91 Identities=13% Similarity=0.141 Sum_probs=54.3
Q ss_pred CCCEEEEECCC-CchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcC--CCCCCCCCCceeEEEEcC
Q 003776 389 RTRVVLDVGCG-VASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMG--TERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 389 ~~~~VLDIGCG-tG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d--~e~LPfpd~SFDlVvss~ 461 (796)
++.+||-+||| .|.++..+++. .|++++.++. +.+++++.|....+...+ ...+....+.||+|+-..
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~-----~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~ 243 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPR-----SLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVS 243 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHH-----HHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECC
Confidence 46789989875 33444445542 4778887653 345666666543221111 111111123589998753
Q ss_pred CCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 462 CRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 462 ~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
. ....+....++|||||.+++..
T Consensus 244 G-------~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 244 G-------HPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred C-------CHHHHHHHHHHhhcCCEEEEEc
Confidence 2 2357788899999999999764
No 400
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=83.49 E-value=0.81 Score=52.30 Aligned_cols=121 Identities=19% Similarity=0.200 Sum_probs=63.2
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHH----hhccc-c----cccccccccCCC---Ccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIY----ERGLF-G----IYHDWCESFSTY---PRTYDLLHA 711 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~----eRGli-g----~~~~~ce~f~ty---prtyDl~Ha 711 (796)
++|||++||+|+|+.++....- -.|+-+|.. .-+..+- .-|+= . +..|..+.+..+ .++||+|=+
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 5799999999999855332321 122333333 2222211 11331 1 112333322222 247999886
Q ss_pred cccc-cccc-----CCcchHHHHHhhcccccCCcEEEEec------cHHHHHHHHHHHhcCCceEEEe
Q 003776 712 DHLF-SKIK-----KRCNLVAVVAEVDRILRPEGKLIVRD------DVETINELESMVKGMQWEVRMT 767 (796)
Q Consensus 712 ~~~~-s~~~-----~rC~~~~~l~E~DRiLRP~G~~i~rd------~~~~~~~~~~~~~~l~W~~~~~ 767 (796)
+--+ +.-. ....+..|+.-.-++|+|||++++-. .....+.+.+-+..-..++++.
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l 367 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 6432 1111 01235566666779999999999842 2335555666666555555543
No 401
>PRK03612 spermidine synthase; Provisional
Probab=83.03 E-value=1.4 Score=52.10 Aligned_cols=121 Identities=16% Similarity=0.170 Sum_probs=64.0
Q ss_pred cccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhh-cc------------cc-cccccccccCCCCccc
Q 003776 642 STVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYER-GL------------FG-IYHDWCESFSTYPRTY 706 (796)
Q Consensus 642 ~~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eR-Gl------------ig-~~~~~ce~f~typrty 706 (796)
.+-+.|||+|||.|+.+..+.+++- |-.|+-++-. .-+.++-+. .| +- +..|-.+-+...++.|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 3568899999999999887776642 0122222221 222222110 00 11 1122222223346789
Q ss_pred cccccccccccccCC-cch--HHHHHhhcccccCCcEEEEec-----cHHHHHHHHHHHhcCCceE
Q 003776 707 DLLHADHLFSKIKKR-CNL--VAVVAEVDRILRPEGKLIVRD-----DVETINELESMVKGMQWEV 764 (796)
Q Consensus 707 Dl~Ha~~~~s~~~~r-C~~--~~~l~E~DRiLRP~G~~i~rd-----~~~~~~~~~~~~~~l~W~~ 764 (796)
|+|-.+- ....... ..+ ..++-.+-|+|+|||.+++.. ..+.+..+.+.++.....+
T Consensus 375 DvIi~D~-~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v 439 (521)
T PRK03612 375 DVIIVDL-PDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLAT 439 (521)
T ss_pred CEEEEeC-CCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEE
Confidence 9998762 2222111 111 235557789999999999842 2445555666665554443
No 402
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=82.70 E-value=5.8 Score=44.55 Aligned_cols=97 Identities=20% Similarity=0.156 Sum_probs=58.4
Q ss_pred CCCCEEEEECCCC-chhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHc-CCCeEEEEcCCCC-----C-CC-CCCce
Q 003776 388 KRTRVVLDVGCGV-ASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALER-GIPAISAVMGTER-----L-PF-PGIVF 454 (796)
Q Consensus 388 ~~~~~VLDIGCGt-G~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~er-gl~~~~~v~d~e~-----L-Pf-pd~SF 454 (796)
.++.+||.+|||. |.++..++++ .|++++.++..+ +++++. +.. .+...... + .+ ....+
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~-----~~~~~~~~~~--vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERL-----EMARSHLGAE--TINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-----HHHHHcCCcE--EEcCCcchHHHHHHHHHcCCCCC
Confidence 3467999999987 7777777664 378887776443 444444 321 11111111 1 12 22369
Q ss_pred eEEEEcCCC----c----------ccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 455 DAVHCARCR----V----------PWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 455 DlVvss~~~----l----------~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
|+|+-.... + +-+.+....+.++.++|+|+|.+++..
T Consensus 256 D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 256 DVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 999874210 0 111245678999999999999999763
No 403
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=82.29 E-value=1.5 Score=46.20 Aligned_cols=137 Identities=17% Similarity=0.173 Sum_probs=91.1
Q ss_pred ccccccccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhhc-----ccccccccccccCCCCcccccccc
Q 003776 639 INWSTVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYERG-----LFGIYHDWCESFSTYPRTYDLLHA 711 (796)
Q Consensus 639 i~w~~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eRG-----lig~~~~~ce~f~typrtyDl~Ha 711 (796)
+.-..+|.|.|+|||.|---+.|..+ |.=+ +.=+|+. +-|--+..|+ ..|=+++||-.-+ .|||-|
T Consensus 26 Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~--i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~-----~dllfa 98 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNSTELLARRWPDAV--ITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQP-----TDLLFA 98 (257)
T ss_pred CCccccceeeecCCCCCHHHHHHHHhCCCCe--EeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCc-----cchhhh
Confidence 34467999999999999887777654 3322 2234554 6777788887 3688999986555 899999
Q ss_pred ccccccccCCcc-hHHHHHhhcccccCCcEEEEe--ccHH--HHHHHHHHHhcCCceEEEee------------------
Q 003776 712 DHLFSKIKKRCN-LVAVVAEVDRILRPEGKLIVR--DDVE--TINELESMVKGMQWEVRMTY------------------ 768 (796)
Q Consensus 712 ~~~~s~~~~rC~-~~~~l~E~DRiLRP~G~~i~r--d~~~--~~~~~~~~~~~l~W~~~~~~------------------ 768 (796)
+-+|--.-..-. +..+|- -|+|||.+-+. |+.+ .-..|.+.++..-|...+.+
T Consensus 99 NAvlqWlpdH~~ll~rL~~----~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lL 174 (257)
T COG4106 99 NAVLQWLPDHPELLPRLVS----QLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELL 174 (257)
T ss_pred hhhhhhccccHHHHHHHHH----hhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHh
Confidence 998876554433 333333 48999999986 3333 23346667776677654432
Q ss_pred ccCCceEEEEEecccCCC
Q 003776 769 SKDKEGLLCVEKSMWRPK 786 (796)
Q Consensus 769 ~~~~e~~l~~~K~~w~~~ 786 (796)
.....+|=||.+.|-.+-
T Consensus 175 a~~~~rvDiW~T~Y~h~l 192 (257)
T COG4106 175 APLACRVDIWHTTYYHQL 192 (257)
T ss_pred CcccceeeeeeeeccccC
Confidence 112456888888887653
No 404
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=82.02 E-value=1.8 Score=45.84 Aligned_cols=118 Identities=19% Similarity=0.216 Sum_probs=74.0
Q ss_pred cccccccccCccccceeeeccCCC-eEEEEeecCCCCCChhHHHhhcccc--cccccccccCCCCccccccccccccccc
Q 003776 642 STVRNVMDMRSVYGGFAAAMKDIS-VWVMNVISIDSPDTLPIIYERGLFG--IYHDWCESFSTYPRTYDLLHADHLFSKI 718 (796)
Q Consensus 642 ~~iRnvmDm~~g~g~faA~l~~~~-vwvmnv~p~~~~~~l~~i~eRGlig--~~~~~ce~f~typrtyDl~Ha~~~~s~~ 718 (796)
..-+-|||+|||.|--++.|.+.. +|| -| --++.-|.++.+|-+=| ++.|.-+.+|+-|-|||=+-.-+-..-+
T Consensus 49 ~~~~~iLDIGCGsGLSg~vL~~~Gh~wi-Gv--DiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWL 125 (270)
T KOG1541|consen 49 PKSGLILDIGCGSGLSGSVLSDSGHQWI-GV--DISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWL 125 (270)
T ss_pred CCCcEEEEeccCCCcchheeccCCceEE-ee--cCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeee
Confidence 367889999999999999998875 443 22 12236777777754432 4567779999999999965432222112
Q ss_pred c---CCcc-----hHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCCc
Q 003776 719 K---KRCN-----LVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQW 762 (796)
Q Consensus 719 ~---~rC~-----~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W 762 (796)
| +.|. |..++-=+-..|.+|+-.++.=-++....++.|...-.|
T Consensus 126 cnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~ 177 (270)
T KOG1541|consen 126 CNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMK 177 (270)
T ss_pred cccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHh
Confidence 2 1222 233444577899999999998444333344444433333
No 405
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=81.74 E-value=10 Score=40.85 Aligned_cols=102 Identities=16% Similarity=0.189 Sum_probs=64.1
Q ss_pred CCCEEEEECCCCchhHHHHhh--------CCeEEEeCChhhHHHHHHHHHHHc-CCCeEEEEcCC----CCCCCCCCcee
Q 003776 389 RTRVVLDVGCGVASFGGFLFD--------RGVLTMSFAPKDEHEAQVQFALER-GIPAISAVMGT----ERLPFPGIVFD 455 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~--------~~V~gvDiSp~dl~~A~~q~A~er-gl~~~~~v~d~----e~LPfpd~SFD 455 (796)
...+++|+|.|+..-++.|.. +.++.+|++...+.....+.+.+. ++++.-...+. ..+| ...--
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~--~~~~R 155 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP--RGGRR 155 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc--CCCeE
Confidence 367999999999987777664 278999999977766655555443 44444333432 2233 22222
Q ss_pred EEEEcCCCccc-cc-chHHHHHHHHhhcCCCcEEEEEeC
Q 003776 456 AVHCARCRVPW-HI-EGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 456 lVvss~~~l~w-~~-d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+++...+.+-. .+ +-..+|.++..+|+||-+|++.+.
T Consensus 156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred EEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 33222221222 22 336788999999999999998743
No 406
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=81.68 E-value=1.2 Score=45.85 Aligned_cols=109 Identities=19% Similarity=0.258 Sum_probs=61.4
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCCC----CChhHHHhh-cccc----cccccccccCCCCccccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSP----DTLPIIYER-GLFG----IYHDWCESFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~----~~l~~i~eR-Glig----~~~~~ce~f~typrtyDl~Ha~~~~s 716 (796)
+|||.|||-|.+--.|.+...-- -++-+|=. .-.+-|.+| |+-- .-.|+-.| -..+.-|||||--+-|.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCcee
Confidence 79999999999888887653100 01111111 122334454 4321 11233333 33457899999777776
Q ss_pred ccc-----CCcchHHHHHhhcccccCCcEEEEeccHHHHHHHHHH
Q 003776 717 KIK-----KRCNLVAVVAEVDRILRPEGKLIVRDDVETINELESM 756 (796)
Q Consensus 717 ~~~-----~rC~~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~ 756 (796)
.+. ..-.+..++==++|+|+|||.|+|..=.=+..++.+.
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~ 192 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEE 192 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHH
Confidence 431 1112234566689999999999997444334444333
No 407
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=81.45 E-value=2.5 Score=47.29 Aligned_cols=94 Identities=22% Similarity=0.198 Sum_probs=58.8
Q ss_pred CCEEEEECCCC-chhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHc-CCCeEEEEcCCCC-----CCCCC-CceeEE
Q 003776 390 TRVVLDVGCGV-ASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALER-GIPAISAVMGTER-----LPFPG-IVFDAV 457 (796)
Q Consensus 390 ~~~VLDIGCGt-G~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~er-gl~~~~~v~d~e~-----LPfpd-~SFDlV 457 (796)
+.+||-+|||+ |.++..+++. .|+++|.++.- +++|++. +........ ... +.... ..||+|
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~R-----l~~A~~~~g~~~~~~~~-~~~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPER-----LELAKEAGGADVVVNPS-EDDAGAEILELTGGRGADVV 242 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHH-----HHHHHHhCCCeEeecCc-cccHHHHHHHHhCCCCCCEE
Confidence 44999999995 5555555553 78999988754 4555553 222111111 110 01111 369999
Q ss_pred EEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 003776 458 HCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQ 496 (796)
Q Consensus 458 vss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~~~ 496 (796)
+=.-. ...++.++.+++||||.+++...+...
T Consensus 243 ie~~G-------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 243 IEAVG-------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred EECCC-------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 86542 346899999999999999987665544
No 408
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=80.52 E-value=22 Score=37.77 Aligned_cols=108 Identities=14% Similarity=0.049 Sum_probs=65.8
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCC
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF 449 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPf 449 (796)
+..+.+.++. +.++.||||=.|++..+|.+. .+++.|+.+.-+..|...+......+........-..++
T Consensus 7 L~~va~~V~~------~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l 80 (226)
T COG2384 7 LTTVANLVKQ------GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVL 80 (226)
T ss_pred HHHHHHHHHc------CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcccc
Confidence 3445555553 456999999999999999875 789999999988888755554433332222222223344
Q ss_pred CC-CceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 450 PG-IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 450 pd-~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.. ..+|+|+... +--. -....|.+-..-|+-=-+|++.
T Consensus 81 ~~~d~~d~ivIAG--MGG~-lI~~ILee~~~~l~~~~rlILQ 119 (226)
T COG2384 81 ELEDEIDVIVIAG--MGGT-LIREILEEGKEKLKGVERLILQ 119 (226)
T ss_pred CccCCcCEEEEeC--CcHH-HHHHHHHHhhhhhcCcceEEEC
Confidence 43 3789888754 2211 1235555555555533456654
No 409
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=80.16 E-value=7.9 Score=40.56 Aligned_cols=99 Identities=9% Similarity=0.004 Sum_probs=49.7
Q ss_pred CCCEEEEECCCCchhHHHHhh--------CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCC----C---C-CCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFD--------RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL----P---F-PGI 452 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~--------~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~L----P---f-pd~ 452 (796)
++.+|+++|.-.|.-+..++. ..|+++|+.....+....+. .-....+.++.++..+. + . ...
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~-hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~ 110 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIES-HPMSPRITFIQGDSIDPEIVDQVRELASPP 110 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhh-ccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence 367999999999876654432 48999999654433222111 01123356666654322 1 1 123
Q ss_pred ceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 453 VFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 453 SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.-.+|+--. -|.+......|.-...+|+||+|+++.
T Consensus 111 ~~vlVilDs--~H~~~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 111 HPVLVILDS--SHTHEHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp SSEEEEESS------SSHHHHHHHHHHT--TT-EEEET
T ss_pred CceEEEECC--CccHHHHHHHHHHhCccCCCCCEEEEE
Confidence 445666543 455667788888899999999999975
No 410
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=79.93 E-value=6.6 Score=43.50 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=33.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHH
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQV 427 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~ 427 (796)
.++..++|.-||.|..+..|+++ .|+|+|.++..+..++.
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~ 62 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKE 62 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH
Confidence 35679999999999999988874 69999999987766653
No 411
>PRK11524 putative methyltransferase; Provisional
Probab=79.41 E-value=1.9 Score=46.86 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=30.2
Q ss_pred CCCCCceeEEEEcCCCcc----------cc-----cchHHHHHHHHhhcCCCcEEEEE
Q 003776 448 PFPGIVFDAVHCARCRVP----------WH-----IEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 448 Pfpd~SFDlVvss~~~l~----------w~-----~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.+++++||+|++...+-. |. .-...+|.++.|+|||||.|++.
T Consensus 22 ~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 22 KIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred hcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 356789999999643211 00 01246889999999999999975
No 412
>PHA03412 putative methyltransferase; Provisional
Probab=78.62 E-value=1.1 Score=47.95 Aligned_cols=93 Identities=18% Similarity=0.249 Sum_probs=48.8
Q ss_pred ccccccCccccceeeeccCC----CeEEEEeecCCCC-CChhHHHhhccc--cc-ccccccccCCCCccccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDI----SVWVMNVISIDSP-DTLPIIYERGLF--GI-YHDWCESFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~----~vwvmnv~p~~~~-~~l~~i~eRGli--g~-~~~~ce~f~typrtyDl~Ha~~~~s 716 (796)
..|||+|||.|.|+.++..+ +. .+|+-++-. ..+.++. +.+. .+ .+|... ++ ++..||+|=++==|-
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~--~~V~aVEID~~Al~~Ar-~n~~~~~~~~~D~~~-~~-~~~~FDlIIsNPPY~ 125 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKP--REIVCVELNHTYYKLGK-RIVPEATWINADALT-TE-FDTLFDMAISNPPFG 125 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCC--cEEEEEECCHHHHHHHH-hhccCCEEEEcchhc-cc-ccCCccEEEECCCCC
Confidence 36999999999999877542 11 133333332 2222222 2221 11 122221 11 245799987766554
Q ss_pred ccc-----CC---cchHH-HHHhhcccccCCcEEEE
Q 003776 717 KIK-----KR---CNLVA-VVAEVDRILRPEGKLIV 743 (796)
Q Consensus 717 ~~~-----~r---C~~~~-~l~E~DRiLRP~G~~i~ 743 (796)
... .| ..+.. ++-..=|+||||++ ||
T Consensus 126 ~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 126 KIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred CccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 322 22 23333 55555679999997 54
No 413
>KOG2730 consensus Methylase [General function prediction only]
Probab=78.47 E-value=2.9 Score=44.22 Aligned_cols=71 Identities=21% Similarity=0.213 Sum_probs=47.1
Q ss_pred CCEEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCC----CCCCCCCCceeEEEEcC
Q 003776 390 TRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGT----ERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~----e~LPfpd~SFDlVvss~ 461 (796)
...|+|.-||.|..+...+.+ .|+++|++|.-+.-|+ ..|+-.|++ +.+.++|. ..|-|.-.-+|+|+.+.
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~Ak-hNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACAR-HNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHh-ccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence 568999999999877777665 8999999997766554 445555665 45556653 23334434466666553
No 414
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=78.37 E-value=13 Score=37.55 Aligned_cols=99 Identities=17% Similarity=0.151 Sum_probs=60.6
Q ss_pred EECCCCchhHHHHhhC-----CeEEEeCChhhHHH-------HHHHHHHHcCCCeEEEEcCCCCC----CCCCCceeEEE
Q 003776 395 DVGCGVASFGGFLFDR-----GVLTMSFAPKDEHE-------AQVQFALERGIPAISAVMGTERL----PFPGIVFDAVH 458 (796)
Q Consensus 395 DIGCGtG~~a~~La~~-----~V~gvDiSp~dl~~-------A~~q~A~ergl~~~~~v~d~e~L----Pfpd~SFDlVv 458 (796)
=||=|.=+|+..|+.. ++++..+.....-. ..++..+..|+.+.+. .|+..| ....+.||.|+
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~-VDat~l~~~~~~~~~~FDrIi 80 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHG-VDATKLHKHFRLKNQRFDRII 80 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccC-CCCCcccccccccCCcCCEEE
Confidence 3566777888888764 67777665432211 1122223456554433 344333 34668899999
Q ss_pred EcCCCccccc------------chHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 459 CARCRVPWHI------------EGGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 459 ss~~~l~w~~------------d~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
-++..+.... =+..+|..+.++|+++|.+.++...+
T Consensus 81 FNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 81 FNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred EeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 9875343111 11467888999999999999885444
No 415
>PHA03411 putative methyltransferase; Provisional
Probab=78.32 E-value=1.2 Score=48.52 Aligned_cols=96 Identities=19% Similarity=0.187 Sum_probs=55.2
Q ss_pred ccccccCccccceeeeccCC-CeEEEEeecCCCC-CChhHHHhh--cccccccccccccCCCCcccccccccccccccc-
Q 003776 645 RNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSP-DTLPIIYER--GLFGIYHDWCESFSTYPRTYDLLHADHLFSKIK- 719 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~-~~l~~i~eR--Glig~~~~~ce~f~typrtyDl~Ha~~~~s~~~- 719 (796)
..|||+|||.|.|+.++..+ +- .+|+-+|.. ..+..+-++ ..--+..|..+... +++||+|=++--|-...
T Consensus 66 grVLDLGcGsGilsl~la~r~~~--~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~--~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKP--EKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES--NEKFDVVISNPPFGKINT 141 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc--cCCCcEEEEcCCccccCc
Confidence 46999999999998877543 11 133333433 344433332 11111222222111 36899998876665321
Q ss_pred ----C-----------Cc-chHHHHHhhcccccCCcEEEEe
Q 003776 720 ----K-----------RC-NLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 720 ----~-----------rC-~~~~~l~E~DRiLRP~G~~i~r 744 (796)
. .| .+..++-.+-++|.|+|.+++-
T Consensus 142 ~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 142 TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 1 12 2567888999999999988763
No 416
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=78.14 E-value=11 Score=40.66 Aligned_cols=100 Identities=19% Similarity=0.108 Sum_probs=54.2
Q ss_pred CCEEEEECCCCchhHHHHhh---CCeEEEeCChhhHHHHHH----HHH-HHcCCCeE--EEEcCC-CCCCCCCCc-eeEE
Q 003776 390 TRVVLDVGCGVASFGGFLFD---RGVLTMSFAPKDEHEAQV----QFA-LERGIPAI--SAVMGT-ERLPFPGIV-FDAV 457 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~---~~V~gvDiSp~dl~~A~~----q~A-~ergl~~~--~~v~d~-e~LPfpd~S-FDlV 457 (796)
..+||++|.|+|..+...+. ..|...|+......-... ..+ .+.|..+. ....+. ....+-... ||+|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 56899999999965544433 366666665432211111 111 11222222 222221 111111122 9999
Q ss_pred EEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 458 HCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 458 vss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+++.|.. .......++.-+...|-.+|..++.
T Consensus 167 lasDvvy-~~~~~e~Lv~tla~ll~~~~~i~l~ 198 (248)
T KOG2793|consen 167 LASDVVY-EEESFEGLVKTLAFLLAKDGTIFLA 198 (248)
T ss_pred EEeeeee-cCCcchhHHHHHHHHHhcCCeEEEE
Confidence 9998632 2235678888888899999965555
No 417
>PRK10742 putative methyltransferase; Provisional
Probab=77.94 E-value=9.9 Score=40.99 Aligned_cols=70 Identities=14% Similarity=-0.053 Sum_probs=43.7
Q ss_pred EEEEECCCCchhHHHHhhC--CeEEEeCChhhHHHHHHHHHHHc-----C--C--CeEEEEcCC-CCCCCCCCceeEEEE
Q 003776 392 VVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALER-----G--I--PAISAVMGT-ERLPFPGIVFDAVHC 459 (796)
Q Consensus 392 ~VLDIGCGtG~~a~~La~~--~V~gvDiSp~dl~~A~~q~A~er-----g--l--~~~~~v~d~-e~LPfpd~SFDlVvs 459 (796)
+|||+=+|.|..+..++.+ .|++++-++.....-+....+.. + + .+.....+. .-|.-...+||+|+.
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVYl 170 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYL 170 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEEE
Confidence 8999999999999999876 79999999865433322222210 1 1 123333443 222222247999998
Q ss_pred cC
Q 003776 460 AR 461 (796)
Q Consensus 460 s~ 461 (796)
-.
T Consensus 171 DP 172 (250)
T PRK10742 171 DP 172 (250)
T ss_pred CC
Confidence 65
No 418
>PLN02476 O-methyltransferase
Probab=77.85 E-value=1.9 Score=47.02 Aligned_cols=134 Identities=13% Similarity=0.050 Sum_probs=69.6
Q ss_pred cccccccccccCccccceeeeccC----C-CeEEEEeecCCCCCChhHHHhhccc---c-cccccccccCCC-----Ccc
Q 003776 640 NWSTVRNVMDMRSVYGGFAAAMKD----I-SVWVMNVISIDSPDTLPIIYERGLF---G-IYHDWCESFSTY-----PRT 705 (796)
Q Consensus 640 ~w~~iRnvmDm~~g~g~faA~l~~----~-~vwvmnv~p~~~~~~l~~i~eRGli---g-~~~~~ce~f~ty-----prt 705 (796)
.-..-++||++|+++|..+.+|.. . .|+++=.-|....-.-+.+-.-|+- = +..+-.+-++.+ +.+
T Consensus 115 ~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 115 QILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred HhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 335688999999999998887753 1 2333322221111111223333431 0 111222323322 357
Q ss_pred ccccccccccccccCCcchHHHHHhhcccccCCcEEEEec-------------cHH---HHHHHHHHHhcCCceEEEeec
Q 003776 706 YDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD-------------DVE---TINELESMVKGMQWEVRMTYS 769 (796)
Q Consensus 706 yDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd-------------~~~---~~~~~~~~~~~l~W~~~~~~~ 769 (796)
||||--+. .+ =....++-..=++|||||.+|+-+ +.. +-+-.+.|...=++...+..
T Consensus 195 FD~VFIDa----~K--~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llP- 267 (278)
T PLN02476 195 YDFAFVDA----DK--RMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVP- 267 (278)
T ss_pred CCEEEECC----CH--HHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEE-
Confidence 99987443 11 123444555558999999999731 111 12223334455567766542
Q ss_pred cCCceEEEEEec
Q 003776 770 KDKEGLLCVEKS 781 (796)
Q Consensus 770 ~~~e~~l~~~K~ 781 (796)
-.+++++++|+
T Consensus 268 -igDGl~i~~K~ 278 (278)
T PLN02476 268 -IGDGMTICRKR 278 (278)
T ss_pred -eCCeeEEEEEC
Confidence 24689998884
No 419
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=77.19 E-value=13 Score=44.11 Aligned_cols=99 Identities=17% Similarity=0.174 Sum_probs=58.5
Q ss_pred CCCCEEEEECCCCchhHH-HHhh---CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCC---------CCC------
Q 003776 388 KRTRVVLDVGCGVASFGG-FLFD---RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTE---------RLP------ 448 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~-~La~---~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e---------~LP------ 448 (796)
.++.+||-+|||.-.+++ ..++ ..|+++|..+. +.+.+++.|........... .+.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~-----rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~ 237 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE-----VAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKA 237 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHcCCeEEEeccccccccccchhhhcchhHHHH
Confidence 357899999999765443 3333 37999998774 33455555643211111000 010
Q ss_pred ----CCC--CceeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 449 ----FPG--IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 449 ----fpd--~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+.. ..+|+|+..-. ++....+..++.++.+.+||||.++....
T Consensus 238 ~~~~~~~~~~gaDVVIetag-~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 238 EMALFAEQAKEVDIIITTAL-IPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHhccCCCCEEEECCC-CCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 111 35999998642 32222343446999999999999886543
No 420
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=75.98 E-value=2 Score=45.06 Aligned_cols=95 Identities=20% Similarity=0.236 Sum_probs=55.5
Q ss_pred cccccCccccceeeeccCCCe-EEEEeecCCCC---------CChhHHHhhcccccccccccccCCCC-ccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDISV-WVMNVISIDSP---------DTLPIIYERGLFGIYHDWCESFSTYP-RTYDLLHADHL 714 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~v-wvmnv~p~~~~---------~~l~~i~eRGlig~~~~~ce~f~typ-rtyDl~Ha~~~ 714 (796)
-||.+|||+|.---++-..|+ -|-.+-|...- -..+.=++|=.++-- |.+|--+ -+||.|-+..+
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~g----e~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADG----ENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeech----hcCcccccCCeeeEEEEEE
Confidence 379999999976666654443 44444443210 001111222223322 4444223 58998885544
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEeccH
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDV 747 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~ 747 (796)
+ |+--.....|=|+-|||||||.+|+=+.+
T Consensus 155 L---CSve~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 155 L---CSVEDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred E---eccCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 3 44444567899999999999999985444
No 421
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=73.67 E-value=4.1 Score=38.51 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCchhHHHHhhCCeEEEeCC
Q 003776 389 RTRVVLDVGCGVASFGGFLFDRGVLTMSFA 418 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~~V~gvDiS 418 (796)
+....+|||||.|.+.-.|..-...|..++
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD 87 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPGWGID 87 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCccccc
Confidence 456899999999998888877655555553
No 422
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=73.58 E-value=0.97 Score=49.19 Aligned_cols=114 Identities=18% Similarity=0.307 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhC-cccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhH------------HHHHHHHHHHc
Q 003776 370 ALHYIDFIQESV-PDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDE------------HEAQVQFALER 433 (796)
Q Consensus 370 a~~yid~L~e~L-p~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl------------~~A~~q~A~er 433 (796)
+....+.+.+.+ ..+. -.+.+|||+|||.|..+...... .+...|++..-+ +... +.....
T Consensus 98 S~dl~~~l~~e~~~~~~--~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~-~~~e~~ 174 (282)
T KOG2920|consen 98 SVDLLPYLKEEIGAQMS--FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGV-EEKENH 174 (282)
T ss_pred HHHHHHHHHHHhhhheE--ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhh-hhhhcc
Confidence 333445555443 2222 35789999999999766665543 445555544322 1110 111101
Q ss_pred CCCeEEEEc---CCCCCCCCC-CceeEEEEcCCCcccccch-HHH-HHHHHhhcCCCcEEEEE
Q 003776 434 GIPAISAVM---GTERLPFPG-IVFDAVHCARCRVPWHIEG-GKL-LLELNRVLRPGGFFIWS 490 (796)
Q Consensus 434 gl~~~~~v~---d~e~LPfpd-~SFDlVvss~~~l~w~~d~-~~~-L~Ei~RVLKPGG~fv~s 490 (796)
.+. ..... |- .+-+.. ..||+|.++.. .+..+. ..+ +....+.++++|.+++.
T Consensus 175 ~~~-~i~~s~l~dg-~~~~t~~~~ydlIlsSet--iy~~~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 175 KVD-EILNSLLSDG-VFNHTERTHYDLILSSET--IYSIDSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred cce-eccccccccc-hhhhccccchhhhhhhhh--hhCcchhhhhHhhhhhhcCCccchhhhh
Confidence 100 00000 00 111111 26888888763 333322 333 56677788899988865
No 423
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=73.44 E-value=1.6 Score=47.84 Aligned_cols=121 Identities=18% Similarity=0.281 Sum_probs=76.8
Q ss_pred ccccCcccccee-eeccCCCeEEEEeecCCCC-CCh----hHHHhhccccccc-ccccccCC--CC---ccccccccccc
Q 003776 647 VMDMRSVYGGFA-AAMKDISVWVMNVISIDSP-DTL----PIIYERGLFGIYH-DWCESFST--YP---RTYDLLHADHL 714 (796)
Q Consensus 647 vmDm~~g~g~fa-A~l~~~~vwvmnv~p~~~~-~~l----~~i~eRGlig~~~-~~ce~f~t--yp---rtyDl~Ha~~~ 714 (796)
||||=||.|=.- -+|.+.|--+-+|.-+|=. ..+ ..|.+|||=++.. .---+|.. |- -.++|+=.+||
T Consensus 139 IlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL 218 (311)
T PF12147_consen 139 ILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSGL 218 (311)
T ss_pred EEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEecc
Confidence 889999988421 1222333323345554443 232 2799999977611 11123321 22 24788889999
Q ss_pred cccccCCcchHHHHHhhcccccCCcEEEEeccH--HHHHHHHHHHhcC----CceEEEe
Q 003776 715 FSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDV--ETINELESMVKGM----QWEVRMT 767 (796)
Q Consensus 715 ~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~--~~~~~~~~~~~~l----~W~~~~~ 767 (796)
|....+.-.+..-|-=+-++|.||||+|..-.+ --++.|...+++. -|-.+..
T Consensus 219 ~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrR 277 (311)
T PF12147_consen 219 YELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRR 277 (311)
T ss_pred hhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEec
Confidence 998888777777788899999999999997533 2466677777664 5766653
No 424
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=73.09 E-value=7.6 Score=42.81 Aligned_cols=100 Identities=15% Similarity=0.059 Sum_probs=61.1
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHH-----cCCCeEEEEcCCC-CC-CCCCCceeEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALE-----RGIPAISAVMGTE-RL-PFPGIVFDAV 457 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~e-----rgl~~~~~v~d~e-~L-Pfpd~SFDlV 457 (796)
...+||-||-|.|.+.+....+ +++.++++.. +.+...++-.. .+..+....+|.. -+ -.+.++||+|
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~-Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDEN-VIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHH-HHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 4789999999999998877765 5666666553 22222233222 1333455555521 11 1336899999
Q ss_pred EEcCCCccccc----chHHHHHHHHhhcCCCcEEEEE
Q 003776 458 HCARCRVPWHI----EGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 458 vss~~~l~w~~----d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+.-.. =+-.+ -...++.-+.+.|||||+++..
T Consensus 200 i~dss-dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 200 ITDSS-DPVGPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred EEecC-CccchHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 97421 11010 1246677799999999999976
No 425
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=72.27 E-value=22 Score=39.00 Aligned_cols=88 Identities=18% Similarity=0.110 Sum_probs=53.2
Q ss_pred CCCCEEEEECCC-CchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCC
Q 003776 388 KRTRVVLDVGCG-VASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCR 463 (796)
Q Consensus 388 ~~~~~VLDIGCG-tG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~ 463 (796)
.++.+||-.|+| .|.++..+++. .|++++.++. +.+++++.|....+. .... ..+.+|+++-.-+
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~-----~~~~a~~~Ga~~vi~---~~~~--~~~~~d~~i~~~~- 232 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAA-----ARRLALALGAASAGG---AYDT--PPEPLDAAILFAP- 232 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChH-----HHHHHHHhCCceecc---cccc--CcccceEEEECCC-
Confidence 357899999975 33344445443 5777776653 346667777543221 1111 1235887664321
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 464 VPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 464 l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
....+....++|++||.+++...
T Consensus 233 ------~~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 233 ------AGGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ------cHHHHHHHHHhhCCCcEEEEEec
Confidence 13578889999999999987643
No 426
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=72.10 E-value=5.2 Score=43.69 Aligned_cols=135 Identities=11% Similarity=0.136 Sum_probs=72.3
Q ss_pred cccccCccccceeeeccCC-C-e--EEEEeecCC---CCCChhHHHhhcccccccc--cccccCCCC---cccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDI-S-V--WVMNVISID---SPDTLPIIYERGLFGIYHD--WCESFSTYP---RTYDLLHADH 713 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~-~-v--wvmnv~p~~---~~~~l~~i~eRGlig~~~~--~ce~f~typ---rtyDl~Ha~~ 713 (796)
.++|.|||.|..+-+|+.. | + ..+-+-++. ++-+.+..---|-|++.|. =-..|-+|| .+||+|-++-
T Consensus 151 ~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNP 230 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNP 230 (328)
T ss_pred eEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCC
Confidence 6899999999888777542 2 2 222222211 1122333334567888865 234555665 7888876543
Q ss_pred --cccc-----------c--------cCCcc--hHHHHHhhcccccCCcEEEEe-----ccHHHHHHHHHHH-hcCCceE
Q 003776 714 --LFSK-----------I--------KKRCN--LVAVVAEVDRILRPEGKLIVR-----DDVETINELESMV-KGMQWEV 764 (796)
Q Consensus 714 --~~s~-----------~--------~~rC~--~~~~l~E~DRiLRP~G~~i~r-----d~~~~~~~~~~~~-~~l~W~~ 764 (796)
+++. | ...|. +..+..=.=|.|+|||++++. +....+..+-... ..--|.+
T Consensus 231 PYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~m~s~~~d~~~~~ 310 (328)
T KOG2904|consen 231 PYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRIWMISLKDDSNGKA 310 (328)
T ss_pred CcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccCcHHHHHHHHhchhhccchh
Confidence 2221 0 01111 135566678999999999985 2333433333322 3333444
Q ss_pred EEe-eccCCceEEEEEe
Q 003776 765 RMT-YSKDKEGLLCVEK 780 (796)
Q Consensus 765 ~~~-~~~~~e~~l~~~K 780 (796)
.+. |-...+++++..+
T Consensus 311 ~v~~Df~~~~Rfv~i~r 327 (328)
T KOG2904|consen 311 AVVSDFAGRPRFVIIHR 327 (328)
T ss_pred heeecccCCcceEEEEe
Confidence 433 3334566666543
No 427
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.51 E-value=1.3 Score=44.43 Aligned_cols=48 Identities=25% Similarity=0.413 Sum_probs=37.1
Q ss_pred ccccccCCCCccccccccccccccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 694 DWCESFSTYPRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 694 ~~ce~f~typrtyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
.|-.+|- ||+-|+|-|.|++..+.-+-. ...+=|--|+|||||++-+.
T Consensus 38 s~e~~F~--dns~d~iyaeHvlEHlt~~Eg-~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 38 SNESMFE--DNSVDAIYAEHVLEHLTYDEG-TSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred hhhccCC--CcchHHHHHHHHHHHHhHHHH-HHHHHHHHHHhCcCcEEEEE
Confidence 4556666 599999999999887654322 35688999999999999874
No 428
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=71.18 E-value=22 Score=38.46 Aligned_cols=92 Identities=13% Similarity=0.090 Sum_probs=52.7
Q ss_pred CCCCEEEEECCC-CchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCC
Q 003776 388 KRTRVVLDVGCG-VASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCR 463 (796)
Q Consensus 388 ~~~~~VLDIGCG-tG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~ 463 (796)
..+.+||-+||| .|..+..+++. .|++++.+... .+++.+.+....+.........-..+.+|+|+....
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~- 234 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDK-----RELARKLGADEVVDSGAELDEQAAAGGADVILVTVV- 234 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHH-----HHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCC-
Confidence 346789999986 55555555554 67777665532 334444453322111111000001246999987431
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 464 VPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 464 l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
....+..+.+.|+++|.++...
T Consensus 235 ------~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 ------SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred ------cHHHHHHHHHhcccCCEEEEEC
Confidence 2357788899999999998653
No 429
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=71.17 E-value=14 Score=40.14 Aligned_cols=83 Identities=22% Similarity=0.167 Sum_probs=48.8
Q ss_pred CCEEEEECCC-CchhHHHHhhC---C-eEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 390 TRVVLDVGCG-VASFGGFLFDR---G-VLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 390 ~~~VLDIGCG-tG~~a~~La~~---~-V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
+.+||=+||| .|.++..+++. . |.++|..+..+ +.|.... +.+.... ....||+|+-...
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl-----~~a~~~~------~i~~~~~--~~~g~Dvvid~~G-- 209 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRR-----DGATGYE------VLDPEKD--PRRDYRAIYDASG-- 209 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH-----Hhhhhcc------ccChhhc--cCCCCCEEEECCC--
Confidence 5678888876 45566666653 3 55666654332 2332211 1111110 1246899987542
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
....+..+.++|+|||.+++...
T Consensus 210 -----~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 -----DPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred -----CHHHHHHHHHhhhcCcEEEEEee
Confidence 23577888999999999997643
No 430
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=71.17 E-value=4 Score=44.40 Aligned_cols=73 Identities=18% Similarity=0.439 Sum_probs=51.8
Q ss_pred cccccccccCCCC---ccccccccccccccccCCcchHHHHHhhcccccCCcEEEE--------ecc-------HH-HHH
Q 003776 691 IYHDWCESFSTYP---RTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIV--------RDD-------VE-TIN 751 (796)
Q Consensus 691 ~~~~~ce~f~typ---rtyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~--------rd~-------~~-~~~ 751 (796)
..+|+++-|+. + .+||.|=.. .|..- -=+|..+|-.|-+||||||+||= .+. .+ .++
T Consensus 149 ~aGDF~e~y~~-~~~~~~~d~VvT~-FFIDT--A~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~e 224 (270)
T PF07942_consen 149 CAGDFLEVYGP-DENKGSFDVVVTC-FFIDT--AENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLE 224 (270)
T ss_pred ecCccEEecCC-cccCCcccEEEEE-EEeec--hHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHH
Confidence 44566776665 3 588876533 22211 12478899999999999999883 343 33 689
Q ss_pred HHHHHHhcCCceEEEe
Q 003776 752 ELESMVKGMQWEVRMT 767 (796)
Q Consensus 752 ~~~~~~~~l~W~~~~~ 767 (796)
+|..+++.+-|+....
T Consensus 225 Ei~~l~~~~GF~~~~~ 240 (270)
T PF07942_consen 225 EIKELIEKLGFEIEKE 240 (270)
T ss_pred HHHHHHHHCCCEEEEE
Confidence 9999999999998764
No 431
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=70.83 E-value=14 Score=40.69 Aligned_cols=93 Identities=18% Similarity=0.147 Sum_probs=54.9
Q ss_pred CCCEEEEECCCC-chhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCC--CCCCCceeEEEEcCC
Q 003776 389 RTRVVLDVGCGV-ASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL--PFPGIVFDAVHCARC 462 (796)
Q Consensus 389 ~~~~VLDIGCGt-G~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~L--Pfpd~SFDlVvss~~ 462 (796)
.+.+||-+|+|. |.++..+++. .|++++.+. ....+.+++++.|... .......+ ....+.||+|+-...
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~--~~~~~~~~~~~~Ga~~--v~~~~~~~~~~~~~~~~d~vid~~g 247 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRD--PPDPKADIVEELGATY--VNSSKTPVAEVKLVGEFDLIIEATG 247 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCC--CCHHHHHHHHHcCCEE--ecCCccchhhhhhcCCCCEEEECcC
Confidence 467899999863 4555556553 677776521 1123445666666542 11111110 001246899987542
Q ss_pred CcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 463 RVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 463 ~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
....+.+..++|++||.+++...
T Consensus 248 -------~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 248 -------VPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred -------CHHHHHHHHHHccCCcEEEEEec
Confidence 23478889999999999986643
No 432
>PRK13699 putative methylase; Provisional
Probab=70.69 E-value=7.7 Score=41.00 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=17.5
Q ss_pred hHHHHHhhcccccCCcEEEE
Q 003776 724 LVAVVAEVDRILRPEGKLIV 743 (796)
Q Consensus 724 ~~~~l~E~DRiLRP~G~~i~ 743 (796)
+..++-|+-|||+|||++|+
T Consensus 51 ~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEE
Confidence 35678999999999999986
No 433
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=70.55 E-value=6.4 Score=40.60 Aligned_cols=44 Identities=18% Similarity=0.294 Sum_probs=33.8
Q ss_pred cchHHHHHhhcccccCCcEEEEe-ccHHHHHHHHHHHhcCCc-eEE
Q 003776 722 CNLVAVVAEVDRILRPEGKLIVR-DDVETINELESMVKGMQW-EVR 765 (796)
Q Consensus 722 C~~~~~l~E~DRiLRP~G~~i~r-d~~~~~~~~~~~~~~l~W-~~~ 765 (796)
-.+..||--.-..|||||.+|+- -+.+.+..+-...+.+.+ ++.
T Consensus 112 ~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~ 157 (187)
T COG2242 112 GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGREIV 157 (187)
T ss_pred CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEE
Confidence 56888888888999999999986 555666666666677777 544
No 434
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=70.06 E-value=2.6 Score=41.92 Aligned_cols=95 Identities=12% Similarity=0.098 Sum_probs=49.2
Q ss_pred ccccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHhhc----ccccc-cccccccCCCCccccccccccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYERG----LFGIY-HDWCESFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRG----lig~~-~~~ce~f~typrtyDl~Ha~~~~s 716 (796)
.-..|||+|||.|.++..|.++.- .|+-++-. ..+..+-++- =+-++ .|. +.++.-...||.|=++--|.
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~-~~~~~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAAADNLTVIHGDA-LKFDLPKLQPYKVVGNLPYN 88 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhccCCCEEEEECch-hcCCccccCCCEEEECCCcc
Confidence 335799999999999999988732 33333333 2333333321 01122 222 22221112477665443332
Q ss_pred cccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 717 KIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 717 ~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
. .. .+..-+++... ++++|++++..
T Consensus 89 ~--~~-~~i~~~l~~~~-~~~~~~l~~q~ 113 (169)
T smart00650 89 I--ST-PILFKLLEEPP-AFRDAVLMVQK 113 (169)
T ss_pred c--HH-HHHHHHHhcCC-CcceEEEEEEH
Confidence 2 11 23333455433 67999999874
No 435
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=69.85 E-value=4.5 Score=43.06 Aligned_cols=90 Identities=22% Similarity=0.227 Sum_probs=57.0
Q ss_pred CCCEEEEECCCCchhHHHHhhC-------------CeEEEeCChhhHHHHHHHHHHHcCCC-eEEEEcCCCCC-------
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR-------------GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERL------- 447 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~-------------~V~gvDiSp~dl~~A~~q~A~ergl~-~~~~v~d~e~L------- 447 (796)
...+|+|+-+..|+++..|.++ .|+++|+-+ |. .++ +...+.|....
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-Ma-----------PI~GV~qlq~DIT~~stae~Ii 108 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-MA-----------PIEGVIQLQGDITSASTAEAII 108 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-CC-----------ccCceEEeecccCCHhHHHHHH
Confidence 3678999999999999988752 288898865 21 112 23344443222
Q ss_pred -CCCCCceeEEEEcCC----Ccccccc------hHHHHHHHHhhcCCCcEEEEE
Q 003776 448 -PFPGIVFDAVHCARC----RVPWHIE------GGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 448 -Pfpd~SFDlVvss~~----~l~w~~d------~~~~L~Ei~RVLKPGG~fv~s 490 (796)
-|....-|+|+|-.+ .+|-... +..+|.-..+||||||.|+.-
T Consensus 109 ~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 109 EHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred HHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 255568999999541 1322110 124555667999999999943
No 436
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.37 E-value=45 Score=33.54 Aligned_cols=100 Identities=11% Similarity=0.001 Sum_probs=56.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC--eEEEEcCCCCCCCCCCceeEEEEcCC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARC 462 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~--~~~~v~d~e~LPfpd~SFDlVvss~~ 462 (796)
.+.++.+|||.|.|.+....++. .-+|+++.|-.+..++.. |...|.. ..+..-|.....+.+-.+=+|+-...
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~-a~R~g~~k~trf~RkdlwK~dl~dy~~vviFgaes 149 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLH-AWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFGAES 149 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHH-HHHHhcccchhhhhhhhhhccccccceEEEeehHH
Confidence 45679999999999977666653 678999999777666533 3333332 34444454444444433434443321
Q ss_pred CcccccchHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 463 RVPWHIEGGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 463 ~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
. .+.+-..+.--|..+-.++..-.|.
T Consensus 150 ~------m~dLe~KL~~E~p~nt~vvacRFPL 175 (199)
T KOG4058|consen 150 V------MPDLEDKLRTELPANTRVVACRFPL 175 (199)
T ss_pred H------HhhhHHHHHhhCcCCCeEEEEecCC
Confidence 1 1222233344555666776553443
No 437
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=68.89 E-value=2 Score=48.04 Aligned_cols=135 Identities=14% Similarity=0.260 Sum_probs=62.9
Q ss_pred HHHHHHhhccc-ccceeeecccccccccccccccCccccceeeeccCCCe-EEEEeecCCCCCChhHHHhhc--------
Q 003776 618 FTADYEHWKRV-VSKSYLNGMGINWSTVRNVMDMRSVYGGFAAAMKDISV-WVMNVISIDSPDTLPIIYERG-------- 687 (796)
Q Consensus 618 F~eD~e~Wk~r-V~~tY~~~lgi~w~~iRnvmDm~~g~g~faA~l~~~~v-wvmnv~p~~~~~~l~~i~eRG-------- 687 (796)
....+.+|.+. +-..|...+.. -..-..||||+||-||=---....+| -++.+=+.. ..|.-+.+|=
T Consensus 37 ~lR~fNNwvKs~LI~~~~~~~~~-~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~--~si~ea~~Ry~~~~~~~~ 113 (331)
T PF03291_consen 37 HLRNFNNWVKSVLIQKYAKKVKQ-NRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISE--ESIEEARERYKQLKKRNN 113 (331)
T ss_dssp HHHHHHHHHHHHHHHHHCHCCCC-TTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-H--HHHHHHHHHHHHHHTSTT
T ss_pred HHHHHhHHHHHHHHHHHHHhhhc-cCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCH--HHHHHHHHHHHHhccccc
Confidence 45567788763 22234332211 12567899999999983322222222 222333322 2333333332
Q ss_pred -------cccccc-------ccccccCCCCcccccccccccccc-ccCCcchHHHHHhhcccccCCcEEEEe--ccHHHH
Q 003776 688 -------LFGIYH-------DWCESFSTYPRTYDLLHADHLFSK-IKKRCNLVAVVAEVDRILRPEGKLIVR--DDVETI 750 (796)
Q Consensus 688 -------lig~~~-------~~ce~f~typrtyDl~Ha~~~~s~-~~~rC~~~~~l~E~DRiLRP~G~~i~r--d~~~~~ 750 (796)
+....+ ...+.|++-++.||+|=|-..|-- ..+.-.+..+|--+-+-|||||+||.. |...++
T Consensus 114 ~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~ 193 (331)
T PF03291_consen 114 SKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIV 193 (331)
T ss_dssp -HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHH
T ss_pred cccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHH
Confidence 111111 111233432368998653322211 112223445778889999999999976 544444
Q ss_pred HHHHH
Q 003776 751 NELES 755 (796)
Q Consensus 751 ~~~~~ 755 (796)
.++++
T Consensus 194 ~~l~~ 198 (331)
T PF03291_consen 194 KRLRE 198 (331)
T ss_dssp CCHHC
T ss_pred HHHHh
Confidence 44444
No 438
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=68.88 E-value=26 Score=39.26 Aligned_cols=92 Identities=14% Similarity=0.153 Sum_probs=58.0
Q ss_pred CCCCEEEEECCCCch-hHHHHhh----CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCC---------CCCCCc
Q 003776 388 KRTRVVLDVGCGVAS-FGGFLFD----RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL---------PFPGIV 453 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~-~a~~La~----~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~L---------Pfpd~S 453 (796)
+.+.+||-+|+|+=. ++...++ .+|+.+|+++.-+ +.|++.|............+ -+....
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rl-----e~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~ 242 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRL-----ELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQ 242 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHH-----HHHHHhCCeEEeeccccccHHHHHHHHHhhccccC
Confidence 468899999999644 3333333 2899999987544 55556665544333321111 123345
Q ss_pred eeEEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 454 FDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 454 FDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
||+++.... ....++.....||+||.+++..
T Consensus 243 ~d~~~dCsG-------~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 243 PDVTFDCSG-------AEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred CCeEEEccC-------chHHHHHHHHHhccCCEEEEec
Confidence 888886431 3466777789999999988763
No 439
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=68.72 E-value=11 Score=45.95 Aligned_cols=36 Identities=25% Similarity=0.224 Sum_probs=26.3
Q ss_pred CceeEEEEcCCCccccc-ch--HHHHHHHHhhcCCCcEEE
Q 003776 452 IVFDAVHCARCRVPWHI-EG--GKLLLELNRVLRPGGFFI 488 (796)
Q Consensus 452 ~SFDlVvss~~~l~w~~-d~--~~~L~Ei~RVLKPGG~fv 488 (796)
..||+++.-. +-+-.+ +. ..+|.+|.|+++|||.|+
T Consensus 165 ~~~d~~~lD~-FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 165 ARADAWFLDG-FAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred ccccEEEeCC-CCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 5699999853 122111 22 689999999999999998
No 440
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=68.64 E-value=8.9 Score=35.64 Aligned_cols=83 Identities=22% Similarity=0.221 Sum_probs=54.1
Q ss_pred CCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCC-----C-CCCCceeEEEEcCCCcccccc
Q 003776 399 GVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL-----P-FPGIVFDAVHCARCRVPWHIE 469 (796)
Q Consensus 399 GtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~L-----P-fpd~SFDlVvss~~~l~w~~d 469 (796)
|.|.++..+++. .|++++.++. +.+++++.|....+... ...+ . .+...+|+|+-...
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~-----k~~~~~~~Ga~~~~~~~-~~~~~~~i~~~~~~~~~d~vid~~g------- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEE-----KLELAKELGADHVIDYS-DDDFVEQIRELTGGRGVDVVIDCVG------- 67 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHH-----HHHHHHHTTESEEEETT-TSSHHHHHHHHTTTSSEEEEEESSS-------
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHH-----HHHHHHhhccccccccc-ccccccccccccccccceEEEEecC-------
Confidence 457777777663 7889988763 45667777743322221 1111 1 23357999987532
Q ss_pred hHHHHHHHHhhcCCCcEEEEEeCCC
Q 003776 470 GGKLLLELNRVLRPGGFFIWSATPV 494 (796)
Q Consensus 470 ~~~~L~Ei~RVLKPGG~fv~s~~~~ 494 (796)
-...+.....+|+|||.+++.....
T Consensus 68 ~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred cHHHHHHHHHHhccCCEEEEEEccC
Confidence 3589999999999999999875543
No 441
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=68.18 E-value=4.2 Score=43.61 Aligned_cols=100 Identities=15% Similarity=0.275 Sum_probs=60.5
Q ss_pred cccccCccccceeeeccCC--C--eEEEEeecCCCCCChhHHHhhc------cccccccccccc---CCCCccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDI--S--VWVMNVISIDSPDTLPIIYERG------LFGIYHDWCESF---STYPRTYDLLHAD 712 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~--~--vwvmnv~p~~~~~~l~~i~eRG------lig~~~~~ce~f---~typrtyDl~Ha~ 712 (796)
.+|-+|||.|.--==|+.. + +-||.. +. +++-+.++-++- .-...+|.+.+= |..+-+.|+|-+-
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~ac-Df-sp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYAC-DF-SPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEc-CC-ChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence 7999999999654444321 1 344421 00 011111111111 233444444332 3335899999999
Q ss_pred cccccccCCcchHHHHHhhcccccCCcEEEEeccHH
Q 003776 713 HLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVE 748 (796)
Q Consensus 713 ~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~~ 748 (796)
.+||.+. .-.|...|-.+-|+|+|||.+++||=..
T Consensus 152 FvLSAi~-pek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 152 FVLSAIH-PEKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred EEEeccC-hHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 9999753 3346678889999999999999997553
No 442
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=67.50 E-value=3.4 Score=43.11 Aligned_cols=135 Identities=16% Similarity=0.203 Sum_probs=70.1
Q ss_pred ccccccccccccCccccceeeecc----C-CCeEEEEeecCCCCCChhHHHhhcc---ccc-ccccccccCCC-----Cc
Q 003776 639 INWSTVRNVMDMRSVYGGFAAAMK----D-ISVWVMNVISIDSPDTLPIIYERGL---FGI-YHDWCESFSTY-----PR 704 (796)
Q Consensus 639 i~w~~iRnvmDm~~g~g~faA~l~----~-~~vwvmnv~p~~~~~~l~~i~eRGl---ig~-~~~~ce~f~ty-----pr 704 (796)
+.-.+-|+||.+|+++|==|.+|. + -.|+++-+-|....---.++-.-|+ |=+ ..+..+-+++. +.
T Consensus 41 ~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 41 VRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp HHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred HHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCC
Confidence 334578999999999885444443 2 2455554443222111123333354 212 23444444432 35
Q ss_pred cccccccccccccccCCcchHHHHHhhcccccCCcEEEEecc-------------H---HHHHHHHHHHhcCCceEEEee
Q 003776 705 TYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDD-------------V---ETINELESMVKGMQWEVRMTY 768 (796)
Q Consensus 705 tyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~-------------~---~~~~~~~~~~~~l~W~~~~~~ 768 (796)
+||||--++ -++ ....++-.+=++|||||.+|+-+. . .+.+-.+.|..-=+.+..+.
T Consensus 121 ~fD~VFiDa-----~K~-~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~ll- 193 (205)
T PF01596_consen 121 QFDFVFIDA-----DKR-NYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLL- 193 (205)
T ss_dssp SEEEEEEES-----TGG-GHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEE-
T ss_pred ceeEEEEcc-----ccc-chhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEE-
Confidence 799987554 122 222233333489999999998411 1 12233444455556666554
Q ss_pred ccCCceEEEEEec
Q 003776 769 SKDKEGLLCVEKS 781 (796)
Q Consensus 769 ~~~~e~~l~~~K~ 781 (796)
.-.+++++++|+
T Consensus 194 -pigdGl~l~~K~ 205 (205)
T PF01596_consen 194 -PIGDGLTLARKR 205 (205)
T ss_dssp -CSTTEEEEEEE-
T ss_pred -EeCCeeEEEEEC
Confidence 235689999985
No 443
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=67.38 E-value=2 Score=44.54 Aligned_cols=123 Identities=10% Similarity=0.125 Sum_probs=59.0
Q ss_pred cccccCccccceeee-ccCCCeEEEEeecCCCC-CChhHHHhh-----cc--cc-cccccccccCCCCcccccccccccc
Q 003776 646 NVMDMRSVYGGFAAA-MKDISVWVMNVISIDSP-DTLPIIYER-----GL--FG-IYHDWCESFSTYPRTYDLLHADHLF 715 (796)
Q Consensus 646 nvmDm~~g~g~faA~-l~~~~vwvmnv~p~~~~-~~l~~i~eR-----Gl--ig-~~~~~ce~f~typrtyDl~Ha~~~~ 715 (796)
.|||++||+|.|+.. |......|.-| +.. ..+.. +.+ |+ +- +..|+.+.++.....||+|=.+-=|
T Consensus 56 ~vLDl~~GsG~l~l~~lsr~a~~V~~v---E~~~~a~~~-a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 56 RCLDCFAGSGALGLEALSRYAAGATLL---EMDRAVAQQ-LIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred EEEEcCCCccHHHHHHHHcCCCEEEEE---ECCHHHHHH-HHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 599999999999974 43333333333 322 12211 112 21 11 2233333332223468988755443
Q ss_pred ccccCCc--chHHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCCceEEEeeccCCceEEEEEe
Q 003776 716 SKIKKRC--NLVAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWEVRMTYSKDKEGLLCVEK 780 (796)
Q Consensus 716 s~~~~rC--~~~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W~~~~~~~~~~e~~l~~~K 780 (796)
- ..+ .+..+|.+ -.+|.|+|.+|+.-.... .+..+.. .|+..-...-+.-.+.+.+|
T Consensus 132 ~---~g~~~~~l~~l~~-~~~l~~~~iv~ve~~~~~--~~~~~~~--~~~~~~~k~yG~s~~~~~~~ 190 (199)
T PRK10909 132 R---KGLLEETINLLED-NGWLADEALIYVESEVEN--GLPTVPA--NWQLHREKVAGQVAYRLYIR 190 (199)
T ss_pred C---CChHHHHHHHHHH-CCCcCCCcEEEEEecCCC--CcccCCC--ccEEEEEecCCCEEEEEEEE
Confidence 2 111 11222323 467899999999854421 1111111 36654432223445666665
No 444
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=66.90 E-value=25 Score=36.06 Aligned_cols=91 Identities=26% Similarity=0.255 Sum_probs=53.6
Q ss_pred CCCCEEEEECCCC-chhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCC-----CCCCCceeEEE
Q 003776 388 KRTRVVLDVGCGV-ASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL-----PFPGIVFDAVH 458 (796)
Q Consensus 388 ~~~~~VLDIGCGt-G~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~L-----Pfpd~SFDlVv 458 (796)
.++.+||.+|+|. |..+..+++. +|++++.++.. .+.++..+....+...+ ... ......||+|+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~-----~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~d~vi 206 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEK-----LELAKELGADHVIDYKE-EDLEEELRLTGGGGADVVI 206 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHH-----HHHHHHhCCceeccCCc-CCHHHHHHHhcCCCCCEEE
Confidence 3578999999985 5555555543 77888776533 23334444321111111 000 11235699999
Q ss_pred EcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 459 CARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 459 ss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
.... ....+..+.+.|+++|.++...
T Consensus 207 ~~~~-------~~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 207 DAVG-------GPETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred ECCC-------CHHHHHHHHHhcccCCEEEEEc
Confidence 7542 1156777889999999999653
No 445
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=66.46 E-value=25 Score=41.01 Aligned_cols=103 Identities=18% Similarity=0.213 Sum_probs=60.6
Q ss_pred CCCEEEEECCCCch--hHHHHhhC----CeEEEeCChhhHHHHHHHHHH--HcCCCeEEE-EcCCCCCCCCC-CceeEEE
Q 003776 389 RTRVVLDVGCGVAS--FGGFLFDR----GVLTMSFAPKDEHEAQVQFAL--ERGIPAISA-VMGTERLPFPG-IVFDAVH 458 (796)
Q Consensus 389 ~~~~VLDIGCGtG~--~a~~La~~----~V~gvDiSp~dl~~A~~q~A~--ergl~~~~~-v~d~e~LPfpd-~SFDlVv 458 (796)
....++|+|.|.|. +++.+.-+ .+..||.+..|+........- +.|-+...- +.-...+|... +.||+|+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 46688899888774 44444332 688899888887665433221 222221111 22235677654 4599999
Q ss_pred EcCCCcccccch---HHHHHH-HHhhcCCCcEEEEEeC
Q 003776 459 CARCRVPWHIEG---GKLLLE-LNRVLRPGGFFIWSAT 492 (796)
Q Consensus 459 ss~~~l~w~~d~---~~~L~E-i~RVLKPGG~fv~s~~ 492 (796)
|++. ++..... ..+... +++..++||++++...
T Consensus 280 ~ah~-l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 280 CAHK-LHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK 316 (491)
T ss_pred eeee-eeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence 9884 3333222 233333 6778899999987643
No 446
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=66.40 E-value=3.1 Score=48.39 Aligned_cols=97 Identities=22% Similarity=0.233 Sum_probs=46.3
Q ss_pred cccccccCcccccee------eeccCCCeEEEEeecCCCC-CChh-HHHhhcc---cccccccccccCCCCccccccccc
Q 003776 644 VRNVMDMRSVYGGFA------AAMKDISVWVMNVISIDSP-DTLP-IIYERGL---FGIYHDWCESFSTYPRTYDLLHAD 712 (796)
Q Consensus 644 iRnvmDm~~g~g~fa------A~l~~~~vwvmnv~p~~~~-~~l~-~i~eRGl---ig~~~~~ce~f~typrtyDl~Ha~ 712 (796)
-.+|||+|||.|-.. ++-....+=|--|--.... .+|+ .|-..|+ |=++|.=-+-+.. |--.|+|=.-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-pekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL-PEKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-SS-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-CCceeEEEEe
Confidence 457999999999884 1112223333222211111 2343 2244443 4444432222222 3345555422
Q ss_pred cccccccCCcchHHHHHhhcccccCCcEEE
Q 003776 713 HLFSKIKKRCNLVAVVAEVDRILRPEGKLI 742 (796)
Q Consensus 713 ~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i 742 (796)
-|-|...+- .+..+|.-.||.|+|+|.+|
T Consensus 266 lLGsfg~nE-l~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLGSFGDNE-LSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --BTTBTTT-SHHHHHHHGGGGEEEEEEEE
T ss_pred ccCCccccc-cCHHHHHHHHhhcCCCCEEe
Confidence 222222222 44567888999999999988
No 447
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=65.51 E-value=35 Score=36.82 Aligned_cols=90 Identities=21% Similarity=0.120 Sum_probs=51.8
Q ss_pred CCCCEEEEECCC-CchhHHHHhhC---C-eEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCC----CCCCCceeEEE
Q 003776 388 KRTRVVLDVGCG-VASFGGFLFDR---G-VLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL----PFPGIVFDAVH 458 (796)
Q Consensus 388 ~~~~~VLDIGCG-tG~~a~~La~~---~-V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~L----Pfpd~SFDlVv 458 (796)
.++.+||-+|+| .|..+..+++. . |++++-++.. ..++.+.+... .+....... ......+|+|+
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~-----~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~vd~v~ 231 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEK-----LELAKKLGATE-TVDPSREDPEAQKEDNPYGFDVVI 231 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHH-----HHHHHHhCCeE-EecCCCCCHHHHHHhcCCCCcEEE
Confidence 356799999865 24444445543 4 6667666533 23344455431 111111110 11345699999
Q ss_pred EcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 459 CARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 459 ss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
.... ....+.++.++|+++|.|+..
T Consensus 232 ~~~~-------~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 232 EATG-------VPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred ECCC-------ChHHHHHHHHHHhcCCEEEEE
Confidence 7531 236788899999999999865
No 448
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=65.27 E-value=4.8 Score=43.61 Aligned_cols=95 Identities=15% Similarity=0.304 Sum_probs=54.1
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChh---------HHHhhcc---cccccccccccCCCCcccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLP---------IIYERGL---FGIYHDWCESFSTYPRTYDLLHA 711 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~---------~i~eRGl---ig~~~~~ce~f~typrtyDl~Ha 711 (796)
|+|||+|||.|-.--.|.... -+|+-+|.. .-+. -.++++. |-..|.=-|.+- -.||.|=|
T Consensus 91 ~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvc 164 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVC 164 (282)
T ss_pred ceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeee
Confidence 559999999997766665544 344444543 2222 2334431 212222222222 22898886
Q ss_pred ccccccccCCcchHHHHHhhcccccCCcEEEEeccHH
Q 003776 712 DHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVE 748 (796)
Q Consensus 712 ~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~~ 748 (796)
+-++..+.. ...++-=+=+.|+|||.++|.+-..
T Consensus 165 sevleHV~d---p~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 165 SEVLEHVKD---PQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHHHHHHhC---HHHHHHHHHHHhCCCCceEeeehhh
Confidence 666655542 2334555567899999999975443
No 449
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=64.80 E-value=29 Score=37.73 Aligned_cols=90 Identities=21% Similarity=0.169 Sum_probs=51.5
Q ss_pred CCCEEEEECCCC-chhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcC--CCCCCCCCCceeEEEEcC
Q 003776 389 RTRVVLDVGCGV-ASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMG--TERLPFPGIVFDAVHCAR 461 (796)
Q Consensus 389 ~~~~VLDIGCGt-G~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d--~e~LPfpd~SFDlVvss~ 461 (796)
++.+||-.|||. |..+..++++ .+++++.++... ..+.+.+....+.... ...+....+.||+|+...
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~-----~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~ 239 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPL-----AVARAMGADETVNLARDPLAAYAADKGDFDVVFEAS 239 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-----HHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECC
Confidence 467888898864 5555555553 466776655332 3334444422111110 111221223599998753
Q ss_pred CCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 462 CRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 462 ~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
. ....+.++.+.|+++|.|+..
T Consensus 240 g-------~~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 240 G-------APAALASALRVVRPGGTVVQV 261 (339)
T ss_pred C-------CHHHHHHHHHHHhcCCEEEEE
Confidence 1 235688999999999999854
No 450
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=64.61 E-value=6.1 Score=45.70 Aligned_cols=110 Identities=17% Similarity=0.283 Sum_probs=59.7
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHHh----hcc---cccccccccccCC--C-Ccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIYE----RGL---FGIYHDWCESFST--Y-PRTYDLLHADH 713 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGl---ig~~~~~ce~f~t--y-prtyDl~Ha~~ 713 (796)
..|||+|||.|.|+.+|...-- .|+-+|.. ..+..+-+ .|+ -=+..|+-+.++. + +.+||+|-.+
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d- 374 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD- 374 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC-
Confidence 4699999999999999986542 34444443 33333222 232 1122233322222 2 3578887532
Q ss_pred ccccccCCcchHHHHHhhcccccCCcEEEEeccHHHHHH-HHHHHhcCCceEE
Q 003776 714 LFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVETINE-LESMVKGMQWEVR 765 (796)
Q Consensus 714 ~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~~~~~~-~~~~~~~l~W~~~ 765 (796)
-.|..+..++--+-+ |.|++.++++=++..+.+ +..|. .--|++.
T Consensus 375 -----PPr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~-~~gY~l~ 420 (443)
T PRK13168 375 -----PPRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLV-EAGYRLK 420 (443)
T ss_pred -----cCCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHh-hCCcEEE
Confidence 133334444444444 589999999966655443 44443 2236654
No 451
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=64.28 E-value=5.1 Score=46.04 Aligned_cols=111 Identities=15% Similarity=0.148 Sum_probs=60.0
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHHH----hhcc---cccccccccccCCC---Ccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPIIY----ERGL---FGIYHDWCESFSTY---PRTYDLLHADH 713 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i~----eRGl---ig~~~~~ce~f~ty---prtyDl~Ha~~ 713 (796)
..|||++||+|.|+..|...-- .|+-++.. .-+..+- ..|+ --+..|..+.++.+ ..+||+|-.+
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d- 369 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD- 369 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC-
Confidence 3699999999999999876422 22333332 2222211 1232 11333443333332 2467876522
Q ss_pred ccccccCCcch-HHHHHhhcccccCCcEEEEeccHHHHHHHHHHHhcCCceEE
Q 003776 714 LFSKIKKRCNL-VAVVAEVDRILRPEGKLIVRDDVETINELESMVKGMQWEVR 765 (796)
Q Consensus 714 ~~s~~~~rC~~-~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~~~~~~l~W~~~ 765 (796)
-.|-.+ ..++-.+.+ |+|+|.++++-++..+.+--.++..-.|++.
T Consensus 370 -----PPr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~ 416 (431)
T TIGR00479 370 -----PPRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGIT 416 (431)
T ss_pred -----cCCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEE
Confidence 123232 333334444 8999999999778777555555544456554
No 452
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=64.09 E-value=19 Score=40.08 Aligned_cols=92 Identities=14% Similarity=0.030 Sum_probs=50.1
Q ss_pred CCCEEEEECCC-CchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCCc
Q 003776 389 RTRVVLDVGCG-VASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (796)
Q Consensus 389 ~~~~VLDIGCG-tG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~l 464 (796)
.+.+||-+|+| .|.++..+++. .|++++.+.... ...+++.|....+...+...+.-..+.+|+|+-...
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~----~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g-- 256 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKE----DEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVS-- 256 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchh----hhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCC--
Confidence 46788889885 34454555543 567776654221 123344554322111111111000124898886431
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 465 PWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 465 ~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
....+.+..++|++||.+++..
T Consensus 257 -----~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 257 -----AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred -----CHHHHHHHHHHhcCCcEEEEeC
Confidence 2347888999999999998653
No 453
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=63.99 E-value=26 Score=37.40 Aligned_cols=90 Identities=20% Similarity=0.167 Sum_probs=52.7
Q ss_pred CCCEEEEECCC-CchhHHHHhhC---C-eEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCC----CCCCCCCCceeEEEE
Q 003776 389 RTRVVLDVGCG-VASFGGFLFDR---G-VLTMSFAPKDEHEAQVQFALERGIPAISAVMGT----ERLPFPGIVFDAVHC 459 (796)
Q Consensus 389 ~~~~VLDIGCG-tG~~a~~La~~---~-V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~----e~LPfpd~SFDlVvs 459 (796)
++.+||-+|+| .|.++..+++. . |++++.++. +.+++++.|....+..... ..+. ....+|+|+-
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~-----r~~~a~~~Ga~~~i~~~~~~~~~~~~~-~~~g~d~vid 193 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPD-----RRELALSFGATALAEPEVLAERQGGLQ-NGRGVDVALE 193 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH-----HHHHHHHcCCcEecCchhhHHHHHHHh-CCCCCCEEEE
Confidence 46789999875 33344444443 3 777776553 3455666665322111110 0111 1235899886
Q ss_pred cCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 460 ARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 460 s~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
... ....+.++.++|+|+|.+++..
T Consensus 194 ~~G-------~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 194 FSG-------ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CCC-------ChHHHHHHHHHhcCCCEEEEec
Confidence 431 2467888999999999999764
No 454
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=63.88 E-value=30 Score=40.07 Aligned_cols=97 Identities=14% Similarity=0.067 Sum_probs=56.6
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCC-chhHHHHhh---CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCC
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGV-ASFGGFLFD---RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF 449 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGt-G~~a~~La~---~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPf 449 (796)
++.+.+.... ...+.+|+-+|||. |.....+++ .+|+++|.++.- ...|...|.... .. .+.+
T Consensus 189 ~~~i~r~t~~---~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R-----~~~A~~~G~~~~--~~-~e~v-- 255 (413)
T cd00401 189 IDGIKRATDV---MIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPIC-----ALQAAMEGYEVM--TM-EEAV-- 255 (413)
T ss_pred HHHHHHhcCC---CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhh-----HHHHHhcCCEEc--cH-HHHH--
Confidence 3455554432 13578999999995 443333333 278889887643 344455554221 11 1111
Q ss_pred CCCceeEEEEcCCCcccccchHHHHHH-HHhhcCCCcEEEEEeC
Q 003776 450 PGIVFDAVHCARCRVPWHIEGGKLLLE-LNRVLRPGGFFIWSAT 492 (796)
Q Consensus 450 pd~SFDlVvss~~~l~w~~d~~~~L~E-i~RVLKPGG~fv~s~~ 492 (796)
..+|+|+.... ...++.. ..+.+|+||.++....
T Consensus 256 --~~aDVVI~atG-------~~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 256 --KEGDIFVTTTG-------NKDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred --cCCCEEEECCC-------CHHHHHHHHHhcCCCCcEEEEeCC
Confidence 24799987532 2345554 5899999999987643
No 455
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=63.01 E-value=45 Score=36.13 Aligned_cols=90 Identities=14% Similarity=0.081 Sum_probs=54.0
Q ss_pred CCCCEEEEECC--CCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCC-----CCCCCceeEE
Q 003776 388 KRTRVVLDVGC--GVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL-----PFPGIVFDAV 457 (796)
Q Consensus 388 ~~~~~VLDIGC--GtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~L-----Pfpd~SFDlV 457 (796)
.++.+||=.|. |.|.++..|++. .|++++-++. +..++++.|....+...+...+ ....+.+|+|
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~-----~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv 211 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDE-----KVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCY 211 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHH-----HHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEE
Confidence 35789998884 466777777664 5666665542 3455556665332221111111 1122469999
Q ss_pred EEcCCCcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 458 HCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 458 vss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
+-.. ....+....++|+|||.++..
T Consensus 212 ~d~~--------G~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 212 FDNV--------GGEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred EECC--------CHHHHHHHHHHhCcCcEEEEe
Confidence 8643 124568899999999999965
No 456
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=62.88 E-value=6.2 Score=43.53 Aligned_cols=130 Identities=22% Similarity=0.267 Sum_probs=79.2
Q ss_pred cccccccccCcc--cccCCCCccccccHHHHHHHHHHhCcccccCCCCCEEEEECCCCchhHH-HHhhC---CeEEEeCC
Q 003776 345 GHQNWVKVTGEY--LTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGG-FLFDR---GVLTMSFA 418 (796)
Q Consensus 345 ~~qnW~~~~g~~--~~Fpgggt~F~~~a~~yid~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~-~La~~---~V~gvDiS 418 (796)
+..-|+.+-..- ..|..--++|..+...-..++..... .+..|.|+=+|.|+|+. .|..+ .|.+++..
T Consensus 154 Gd~gWV~~v~NGI~~~~d~t~~MFS~GN~~EK~Rv~~~sc------~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwN 227 (351)
T KOG1227|consen 154 GDLGWVKHVQNGITQIWDPTKTMFSRGNIKEKKRVLNTSC------DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWN 227 (351)
T ss_pred ccccceeehhcCeEEEechhhhhhhcCcHHHHHHhhhccc------ccchhhhhhcccceEEeehhhccCccEEEEEecC
Confidence 334466654443 33444456787776555455544444 35799999999999998 66543 89999999
Q ss_pred hhhHHHHHHHHHHHcCCCe-EEEEcCCCCCCCCCCceeEEEEcCCCcccccchHHHHHHHHhhcCCCcE
Q 003776 419 PKDEHEAQVQFALERGIPA-ISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGF 486 (796)
Q Consensus 419 p~dl~~A~~q~A~ergl~~-~~~v~d~e~LPfpd~SFDlVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~ 486 (796)
|-.+ +|..+.++..++.- ...+.+..+.+-+....|-|...+ ++-. ..-..-...+|||.|-
T Consensus 228 p~sv-EaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGL--lPSs---e~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 228 PWSV-EALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGL--LPSS---EQGWPTAIKALKPEGG 290 (351)
T ss_pred HHHH-HHHHHHHHhcchHHHHHhhhccccccCccccchheeecc--cccc---ccchHHHHHHhhhcCC
Confidence 9654 44445555444321 112233456677778888887754 4432 2333445678888654
No 457
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=62.82 E-value=26 Score=39.00 Aligned_cols=90 Identities=18% Similarity=0.089 Sum_probs=52.8
Q ss_pred CCCEEEEECCC-CchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCC-----CCCCCceeEEE
Q 003776 389 RTRVVLDVGCG-VASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL-----PFPGIVFDAVH 458 (796)
Q Consensus 389 ~~~~VLDIGCG-tG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~L-----Pfpd~SFDlVv 458 (796)
++.+||=+|+| .|.++..+++. .|++++.++. +.+++++.|....+...+ ..+ ....+.+|+|+
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~-----r~~~a~~~Ga~~~i~~~~-~~~~~~i~~~~~~g~d~vi 264 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNED-----KLALARELGATATVNAGD-PNAVEQVRELTGGGVDYAF 264 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHH-----HHHHHHHcCCceEeCCCc-hhHHHHHHHHhCCCCCEEE
Confidence 46788889975 23444555543 4778877653 345565666532221111 111 01123589998
Q ss_pred EcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 459 CARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 459 ss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
-... ....+....++|+++|.+++..
T Consensus 265 d~~G-------~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 265 EMAG-------SVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred ECCC-------ChHHHHHHHHHHhcCCEEEEEc
Confidence 6431 2357788889999999998754
No 458
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=62.35 E-value=35 Score=37.72 Aligned_cols=92 Identities=16% Similarity=0.108 Sum_probs=53.5
Q ss_pred CCCCEEEEECCCC-chhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCC-----C-CCCCceeE
Q 003776 388 KRTRVVLDVGCGV-ASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL-----P-FPGIVFDA 456 (796)
Q Consensus 388 ~~~~~VLDIGCGt-G~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~L-----P-fpd~SFDl 456 (796)
.++.+||-+|||. |.++..+++. .|++++.++. +.+++++.|....+.... ..+ . .....+|+
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~-----~~~~~~~~Ga~~~i~~~~-~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDR-----KLEWAREFGATHTVNSSG-TDPVEAIRALTGGFGADV 248 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH-----HHHHHHHcCCceEEcCCC-cCHHHHHHHHhCCCCCCE
Confidence 3578999998752 3444445543 3778877653 445566666532211111 111 0 12235899
Q ss_pred EEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 457 VHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 457 Vvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
|+-... ....+....+.||+||.+++...
T Consensus 249 vid~~g-------~~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 249 VIDAVG-------RPETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred EEECCC-------CHHHHHHHHHHhccCCEEEEECC
Confidence 986431 13567788899999999997643
No 459
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=62.28 E-value=10 Score=38.95 Aligned_cols=111 Identities=25% Similarity=0.386 Sum_probs=66.2
Q ss_pred cccccCcccccee-----eeccCCCeEEEEeecCCCC-CChh-HHHhhcc--cccccccccccCCCCccccccccccccc
Q 003776 646 NVMDMRSVYGGFA-----AAMKDISVWVMNVISIDSP-DTLP-IIYERGL--FGIYHDWCESFSTYPRTYDLLHADHLFS 716 (796)
Q Consensus 646 nvmDm~~g~g~fa-----A~l~~~~vwvmnv~p~~~~-~~l~-~i~eRGl--ig~~~~~ce~f~typrtyDl~Ha~~~~s 716 (796)
+++|+|+|-| |= .++-+..|.. |=++.-. +.|. ++-+=|| +=++|...|. +.++..||+|=|-
T Consensus 51 ~~lDiGSGaG-fPGipLaI~~p~~~~~L--vEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aR---- 122 (184)
T PF02527_consen 51 KVLDIGSGAG-FPGIPLAIARPDLQVTL--VESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTAR---- 122 (184)
T ss_dssp EEEEETSTTT-TTHHHHHHH-TTSEEEE--EESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEE----
T ss_pred eEEecCCCCC-ChhHHHHHhCCCCcEEE--EeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEee----
Confidence 5999999955 42 2222322221 2222222 4444 4556676 5577777777 5678999998622
Q ss_pred cccCCcchHHHHHhhcccccCCcEEEEe---ccHHHHHHHHHHHhcCCceEEEe
Q 003776 717 KIKKRCNLVAVVAEVDRILRPEGKLIVR---DDVETINELESMVKGMQWEVRMT 767 (796)
Q Consensus 717 ~~~~rC~~~~~l~E~DRiLRP~G~~i~r---d~~~~~~~~~~~~~~l~W~~~~~ 767 (796)
.-+.+..++--+-+.|+|||.+++- +..+.+...+.-.+.+.++....
T Consensus 123 ---Av~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~v 173 (184)
T PF02527_consen 123 ---AVAPLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLSV 173 (184)
T ss_dssp ---SSSSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEEE
T ss_pred ---hhcCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEeee
Confidence 2256777777778899999999985 34456666666667777776543
No 460
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=61.64 E-value=32 Score=37.96 Aligned_cols=89 Identities=10% Similarity=0.090 Sum_probs=51.0
Q ss_pred CCCEEEEECCCC-chhHHHHhh-----CCeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCC
Q 003776 389 RTRVVLDVGCGV-ASFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARC 462 (796)
Q Consensus 389 ~~~~VLDIGCGt-G~~a~~La~-----~~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~ 462 (796)
++.+||-+|||. |.++..+++ ..|++++.++.- .++++..+. .... + .+. ....||+|+-.-.
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k-----~~~a~~~~~--~~~~-~--~~~-~~~g~d~viD~~G 231 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEK-----LDLFSFADE--TYLI-D--DIP-EDLAVDHAFECVG 231 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhH-----HHHHhhcCc--eeeh-h--hhh-hccCCcEEEECCC
Confidence 478999999863 334444433 258888887643 333433221 1111 1 111 1114899886431
Q ss_pred CcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 463 RVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 463 ~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
.......+....++|||||.+++...
T Consensus 232 ----~~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 232 ----GRGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred ----CCccHHHHHHHHHhCcCCcEEEEEee
Confidence 11124678889999999999987643
No 461
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=60.53 E-value=7.3 Score=41.16 Aligned_cols=28 Identities=7% Similarity=0.139 Sum_probs=18.0
Q ss_pred cCCcccceeehhhHHHHHHHHHhhhhcC
Q 003776 14 SASSYCSTVTITVFVALCLVGVWMMTSS 41 (796)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~g~w~~~~~ 41 (796)
|=++--..|.|.|.+.|.+|=+|||...
T Consensus 10 RK~N~iLNiaI~IV~lLIiiva~~lf~~ 37 (217)
T PF07423_consen 10 RKTNKILNIAIGIVSLLIIIVAYQLFFG 37 (217)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhhheec
Confidence 4456666777777666666666666643
No 462
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=60.49 E-value=37 Score=36.94 Aligned_cols=91 Identities=18% Similarity=0.153 Sum_probs=51.5
Q ss_pred CCCEEEEECCC-CchhHHHHhhC---C-eEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCC--CC-CC-CCCceeEEEE
Q 003776 389 RTRVVLDVGCG-VASFGGFLFDR---G-VLTMSFAPKDEHEAQVQFALERGIPAISAVMGTE--RL-PF-PGIVFDAVHC 459 (796)
Q Consensus 389 ~~~~VLDIGCG-tG~~a~~La~~---~-V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e--~L-Pf-pd~SFDlVvs 459 (796)
++.+||=+|+| .|.++..++++ . |++++.++. +.+++++.|....+...+.. .+ .+ ....||+|+-
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~-----~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid 237 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPE-----RLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIE 237 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH-----HHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEE
Confidence 47788888875 22344444442 5 888876553 34555566653222111100 01 11 2236999986
Q ss_pred cCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 460 ARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 460 s~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
... ....+....+.|+++|.+++..
T Consensus 238 ~~g-------~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 238 CSG-------NTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCC-------CHHHHHHHHHHhhcCCEEEEEc
Confidence 431 2345677889999999998653
No 463
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=59.62 E-value=45 Score=34.94 Aligned_cols=89 Identities=21% Similarity=0.115 Sum_probs=50.8
Q ss_pred CCCCEEEEECCCC-chhHHHHhhC---C-eEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCC
Q 003776 388 KRTRVVLDVGCGV-ASFGGFLFDR---G-VLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARC 462 (796)
Q Consensus 388 ~~~~~VLDIGCGt-G~~a~~La~~---~-V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~ 462 (796)
.++.+||-.|||. |..+..++++ . |++++.++... ..+.+.|........ ...+ .....+|+|+....
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~-----~~~~~~g~~~~~~~~-~~~~-~~~~~~d~vl~~~~ 168 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARR-----ELAEALGPADPVAAD-TADE-IGGRGADVVIEASG 168 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHH-----HHHHHcCCCcccccc-chhh-hcCCCCCEEEEccC
Confidence 3577888888764 4444444443 5 88887665432 344444511111110 0111 12346899986421
Q ss_pred CcccccchHHHHHHHHhhcCCCcEEEEE
Q 003776 463 RVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (796)
Q Consensus 463 ~l~w~~d~~~~L~Ei~RVLKPGG~fv~s 490 (796)
....+....+.|+++|.++..
T Consensus 169 -------~~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 169 -------SPSALETALRLLRDRGRVVLV 189 (277)
T ss_pred -------ChHHHHHHHHHhcCCcEEEEE
Confidence 235778889999999999865
No 464
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=59.25 E-value=4.9 Score=41.67 Aligned_cols=53 Identities=17% Similarity=0.269 Sum_probs=29.4
Q ss_pred ccccccccCCCCccccccccccccccccCCcchHHHHHhhcccccCCcEEEEecc
Q 003776 692 YHDWCESFSTYPRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRDD 746 (796)
Q Consensus 692 ~~~~ce~f~typrtyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~ 746 (796)
.|+.+. .+.++.-||+|-|-+||.-.. .=.-..||=-+-+.|+||||++|-..
T Consensus 124 ~~NL~~-~~~~~~~fD~I~CRNVlIYF~-~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 124 RHNLLD-PDPPFGRFDLIFCRNVLIYFD-PETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp E--TT--S------EEEEEE-SSGGGS--HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred ecccCC-CCcccCCccEEEecCEEEEeC-HHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 444455 333467899999777776432 22224667778899999999999643
No 465
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=59.17 E-value=9.2 Score=44.87 Aligned_cols=98 Identities=18% Similarity=0.175 Sum_probs=52.2
Q ss_pred cccccCccccceeeeccC----CCeEEEEeecCCCC-CChhHHHhh-cccc--cc-cccccccCCCCccccccc----cc
Q 003776 646 NVMDMRSVYGGFAAAMKD----ISVWVMNVISIDSP-DTLPIIYER-GLFG--IY-HDWCESFSTYPRTYDLLH----AD 712 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~----~~vwvmnv~p~~~~-~~l~~i~eR-Glig--~~-~~~ce~f~typrtyDl~H----a~ 712 (796)
.||||.|+-||=..+|.. ....| .+=+.... ..|.--++| |+-- +. .|=+..-..+|..||.|- |+
T Consensus 116 ~VLD~CAAPGgKTt~la~~l~~~g~lv-A~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCS 194 (470)
T PRK11933 116 RVLDMAAAPGSKTTQIAALMNNQGAIV-ANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPCS 194 (470)
T ss_pred EEEEeCCCccHHHHHHHHHcCCCCEEE-EEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCCC
Confidence 599999999996655432 23222 22221111 444445555 4311 11 121111124467899988 44
Q ss_pred c--ccccc-------c----CCcch--HHHHHhhcccccCCcEEEEe
Q 003776 713 H--LFSKI-------K----KRCNL--VAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 713 ~--~~s~~-------~----~rC~~--~~~l~E~DRiLRP~G~~i~r 744 (796)
+ +|..- . .+|.- ..||-..=++|||||++|.+
T Consensus 195 G~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 195 GEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (470)
T ss_pred CCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 3 23211 0 01111 36788888999999999986
No 466
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=58.67 E-value=48 Score=36.80 Aligned_cols=91 Identities=14% Similarity=0.041 Sum_probs=54.5
Q ss_pred CCCCEEEEECC--CCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHH-HcCCCeEEEEcCCCCC-----CCCCCceeE
Q 003776 388 KRTRVVLDVGC--GVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFAL-ERGIPAISAVMGTERL-----PFPGIVFDA 456 (796)
Q Consensus 388 ~~~~~VLDIGC--GtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~-ergl~~~~~v~d~e~L-----Pfpd~SFDl 456 (796)
.++.+||=.|+ |.|.++..|++. .|++++.++. +..+++ +.|....+...+...+ .+..+.+|+
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~-----k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~ 231 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQ-----KVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDI 231 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHH-----HHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEE
Confidence 35789999998 367777777764 5677666543 234443 4555332211110011 011246899
Q ss_pred EEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 457 VHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 457 Vvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
|+-... ...+..+.++|++||.+++..
T Consensus 232 v~d~vG--------~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 232 YFDNVG--------GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred EEECCC--------HHHHHHHHHHhccCCEEEEEC
Confidence 986431 257788999999999998653
No 467
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=58.51 E-value=14 Score=41.98 Aligned_cols=52 Identities=23% Similarity=0.200 Sum_probs=36.7
Q ss_pred HHHHHHhCcccccCCCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHH
Q 003776 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEA 425 (796)
Q Consensus 374 id~L~e~Lp~i~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A 425 (796)
++.|.+.+..|..-.+...|+|+|.|.|++++.|.-. .|.+||-+.....+|
T Consensus 138 i~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra 192 (476)
T KOG2651|consen 138 IRRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERA 192 (476)
T ss_pred HHHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHH
Confidence 4455555544443445789999999999999998753 789999886544444
No 468
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=58.39 E-value=4 Score=44.98 Aligned_cols=108 Identities=16% Similarity=0.186 Sum_probs=58.3
Q ss_pred ccccccCccccceeeeccCCCeEEEEeecCCCC-CChhHH----HhhcccccccccccccCC----CCcccccccccccc
Q 003776 645 RNVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPII----YERGLFGIYHDWCESFST----YPRTYDLLHADHLF 715 (796)
Q Consensus 645 RnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i----~eRGlig~~~~~ce~f~t----yprtyDl~Ha~~~~ 715 (796)
..|||++||.|.|+..|..+. ..|+-+|.. ..+..+ -..|+ .-.+-.|..... ....||+|-.+
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~d--- 247 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVN--- 247 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEEC---
Confidence 569999999999999998754 244455543 333322 22343 111111221111 12468887744
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEEEeccHHHHHH-HHHHHhcCCceEE
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLIVRDDVETINE-LESMVKGMQWEVR 765 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd~~~~~~~-~~~~~~~l~W~~~ 765 (796)
-.|-.+...++++=.-++|++.++++-+...+.+ ++.+ . -|++.
T Consensus 248 ---PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l-~--~y~~~ 292 (315)
T PRK03522 248 ---PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL-P--GYRIE 292 (315)
T ss_pred ---CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc-c--CcEEE
Confidence 2344443334343333789999999866664433 3333 2 36554
No 469
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=58.26 E-value=31 Score=38.38 Aligned_cols=77 Identities=19% Similarity=0.243 Sum_probs=49.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEEcCCC
Q 003776 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCR 463 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvss~~~ 463 (796)
.++..+||.--|.|..+..++++ .|+|+|-++..+..++ ..|.-..+.|-+++.++.
T Consensus 19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~------------------~~l~~~~~r~~~~~~~F~- 79 (310)
T PF01795_consen 19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAK------------------ERLKKFDDRFIFIHGNFS- 79 (310)
T ss_dssp -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHH------------------CCTCCCCTTEEEEES-GG-
T ss_pred CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHH------------------HHHhhccceEEEEeccHH-
Confidence 45779999999999999999875 7999999997765553 222211567988888763
Q ss_pred cccccchHHHHHHHHhhcCCCcEEE
Q 003776 464 VPWHIEGGKLLLELNRVLRPGGFFI 488 (796)
Q Consensus 464 l~w~~d~~~~L~Ei~RVLKPGG~fv 488 (796)
+....|.+...+-+.+|.|+
T Consensus 80 -----~l~~~l~~~~~~~~~dgiL~ 99 (310)
T PF01795_consen 80 -----NLDEYLKELNGINKVDGILF 99 (310)
T ss_dssp -----GHHHHHHHTTTTS-EEEEEE
T ss_pred -----HHHHHHHHccCCCccCEEEE
Confidence 34455554434446667666
No 470
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=58.00 E-value=4 Score=45.73 Aligned_cols=99 Identities=23% Similarity=0.184 Sum_probs=61.5
Q ss_pred eeeccccccc--ccccccccCccccc---eeeeccCCCeEEEEeecCCCC-CChhHHHhhcc-------ccccccccccc
Q 003776 633 YLNGMGINWS--TVRNVMDMRSVYGG---FAAAMKDISVWVMNVISIDSP-DTLPIIYERGL-------FGIYHDWCESF 699 (796)
Q Consensus 633 Y~~~lgi~w~--~iRnvmDm~~g~g~---faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGl-------ig~~~~~ce~f 699 (796)
|.+.+...+. +=++|||+|||+|- |+|.--.+.| +-|--++-. -..++|.+-|| .|-.++.-.|
T Consensus 48 Yr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V--~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP- 124 (346)
T KOG1499|consen 48 YRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKV--YAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELP- 124 (346)
T ss_pred HHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceE--EEEechHHHHHHHHHHHhcCccceEEEeecceEEEecC-
Confidence 5444433332 35789999999995 4443333333 333333322 23456777774 5556666333
Q ss_pred CCCCccccccccccccccccCCcch-----HHHHHhhcccccCCcEEE
Q 003776 700 STYPRTYDLLHADHLFSKIKKRCNL-----VAVVAEVDRILRPEGKLI 742 (796)
Q Consensus 700 ~typrtyDl~Ha~~~~s~~~~rC~~-----~~~l~E~DRiLRP~G~~i 742 (796)
.--.|.|= |-|..-|++ .-||.-=||-|.|||.++
T Consensus 125 ---~eKVDiIv-----SEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 125 ---VEKVDIIV-----SEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred ---ccceeEEe-----ehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 23466654 788888887 366778899999999987
No 471
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=57.91 E-value=3.9 Score=42.75 Aligned_cols=88 Identities=19% Similarity=0.259 Sum_probs=45.1
Q ss_pred cccccCccccceeeeccCC--Ce-EEEEeecCCCC-CChhHHHhh-cc---cccccccccccCCCCcccccccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDI--SV-WVMNVISIDSP-DTLPIIYER-GL---FGIYHDWCESFSTYPRTYDLLHADHLFSK 717 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~--~v-wvmnv~p~~~~-~~l~~i~eR-Gl---ig~~~~~ce~f~typrtyDl~Ha~~~~s~ 717 (796)
.|||+|||+|=++|.|... ++ -|..|-....- ..-.-.+.+ |+ .-+.+|-.+.++.. -.||.||...-..
T Consensus 75 ~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~-apfD~I~v~~a~~- 152 (209)
T PF01135_consen 75 RVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE-APFDRIIVTAAVP- 152 (209)
T ss_dssp EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG--SEEEEEESSBBS-
T ss_pred EEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC-CCcCEEEEeeccc-
Confidence 5999999999888777532 22 34444332211 111122222 32 22344544444432 2599999544222
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEE
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIV 743 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~ 743 (796)
.+..-|++. |+|||.+|+
T Consensus 153 -----~ip~~l~~q---L~~gGrLV~ 170 (209)
T PF01135_consen 153 -----EIPEALLEQ---LKPGGRLVA 170 (209)
T ss_dssp -----S--HHHHHT---EEEEEEEEE
T ss_pred -----hHHHHHHHh---cCCCcEEEE
Confidence 234445554 999999996
No 472
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=57.81 E-value=24 Score=47.24 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=5.4
Q ss_pred CeEEEEeecCCC
Q 003776 665 SVWVMNVISIDS 676 (796)
Q Consensus 665 ~vwvmnv~p~~~ 676 (796)
++|-.-++..|+
T Consensus 4494 d~~qleiiisdg 4505 (4600)
T COG5271 4494 DIRQLEIIISDG 4505 (4600)
T ss_pred chheeEEEeecC
Confidence 444444444443
No 473
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=57.71 E-value=15 Score=39.16 Aligned_cols=33 Identities=9% Similarity=0.216 Sum_probs=25.0
Q ss_pred CCEEEEECCCCchhHHHHhhC------------CeEEEeCChhhH
Q 003776 390 TRVVLDVGCGVASFGGFLFDR------------GVLTMSFAPKDE 422 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~La~~------------~V~gvDiSp~dl 422 (796)
.-+|+++|+|.|.++..+++. .++.+++||.+.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~ 63 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLR 63 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCH
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHH
Confidence 469999999999999887651 689999999664
No 474
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=56.11 E-value=8.2 Score=42.40 Aligned_cols=42 Identities=14% Similarity=0.388 Sum_probs=32.3
Q ss_pred CccccccccccccccccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 703 PRTYDLLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 703 prtyDl~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
+..||+|-|-++|.... .-.-..|+-.+-+.|+|||++++-.
T Consensus 221 ~~~fD~I~cRNvliyF~-~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 221 PGPFDAIFCRNVMIYFD-KTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred CCCcceeeHhhHHhcCC-HHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 47899999877775432 2234578899999999999999865
No 475
>PRK11524 putative methyltransferase; Provisional
Probab=56.04 E-value=36 Score=37.02 Aligned_cols=42 Identities=14% Similarity=0.137 Sum_probs=32.5
Q ss_pred CCCCEEEEECCCCchhHHHH--hhCCeEEEeCChhhHHHHHHHH
Q 003776 388 KRTRVVLDVGCGVASFGGFL--FDRGVLTMSFAPKDEHEAQVQF 429 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~L--a~~~V~gvDiSp~dl~~A~~q~ 429 (796)
.++..|||-=||+|+.+.+. +.|+.+|+|+++.-...|..++
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl 250 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRL 250 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHH
Confidence 46899999999999755544 4579999999997766665444
No 476
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=55.84 E-value=20 Score=38.88 Aligned_cols=64 Identities=13% Similarity=-0.009 Sum_probs=40.8
Q ss_pred EEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCC--CCceeEEEEcC
Q 003776 392 VVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFP--GIVFDAVHCAR 461 (796)
Q Consensus 392 ~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfp--d~SFDlVvss~ 461 (796)
+|||+-||.|.+...|... .+.++|+++..+...+ .+.+......|...+... ...+|+|+...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~------~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYE------ANFPNKLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHH------HhCCCCCccCccccCchhhcCCCCCEEEeCC
Confidence 6899999999998888765 5788999875433222 122222344555444321 24699999864
No 477
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=55.24 E-value=12 Score=42.38 Aligned_cols=89 Identities=21% Similarity=0.243 Sum_probs=51.6
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCCCCChhHHHhhc-------------ccccccccccccCCCCccccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSPDTLPIIYERG-------------LFGIYHDWCESFSTYPRTYDLLHAD 712 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~~~l~~i~eRG-------------lig~~~~~ce~f~typrtyDl~Ha~ 712 (796)
-++|++||+|+..=+... .-.....+.+.-..=+.|+ -+ +.+ |+.--|+=..|||.+-+
T Consensus 113 ~~~~~~~g~~~~~~~i~~-----f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~-~~~-~~~~~~fedn~fd~v~~- 184 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAV-----FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNF-VVA-DFGKMPFEDNTFDGVRF- 184 (364)
T ss_pred cccccCcCcCchhHHHHH-----hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcce-ehh-hhhcCCCCccccCcEEE-
Confidence 355999999987654432 2223333332222222222 23 222 33333433689998762
Q ss_pred cccccccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 713 HLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 713 ~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
....|.-=....++-||=|+|.|||++|..
T Consensus 185 --ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 185 --LEVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred --EeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 222334444578899999999999999973
No 478
>PLN02740 Alcohol dehydrogenase-like
Probab=55.10 E-value=54 Score=36.77 Aligned_cols=92 Identities=15% Similarity=0.103 Sum_probs=52.5
Q ss_pred CCCCEEEEECCC-CchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCC-CC-----CCCCCceeE
Q 003776 388 KRTRVVLDVGCG-VASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTE-RL-----PFPGIVFDA 456 (796)
Q Consensus 388 ~~~~~VLDIGCG-tG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e-~L-----Pfpd~SFDl 456 (796)
.++.+||=+||| .|.++..+++. .|++++.++. +.+++++.|....+...+.. .+ .+..+.||+
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~-----r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dv 271 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPE-----KFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDY 271 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChH-----HHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCE
Confidence 357899999875 23344444442 4788877653 44556666654322111100 01 011226999
Q ss_pred EEEcCCCcccccchHHHHHHHHhhcCCC-cEEEEEe
Q 003776 457 VHCARCRVPWHIEGGKLLLELNRVLRPG-GFFIWSA 491 (796)
Q Consensus 457 Vvss~~~l~w~~d~~~~L~Ei~RVLKPG-G~fv~s~ 491 (796)
|+-... ....+....+.|++| |.+++..
T Consensus 272 vid~~G-------~~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 272 SFECAG-------NVEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred EEECCC-------ChHHHHHHHHhhhcCCCEEEEEc
Confidence 987532 235778888899997 9888654
No 479
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=54.54 E-value=5 Score=36.40 Aligned_cols=94 Identities=14% Similarity=0.113 Sum_probs=32.1
Q ss_pred cccCccccceeeeccC----CC-eEEEEeecCCCCCChhHHHh-hcccccccccccc----cCCCC-ccccccccccccc
Q 003776 648 MDMRSVYGGFAAAMKD----IS-VWVMNVISIDSPDTLPIIYE-RGLFGIYHDWCES----FSTYP-RTYDLLHADHLFS 716 (796)
Q Consensus 648 mDm~~g~g~faA~l~~----~~-vwvmnv~p~~~~~~l~~i~e-RGlig~~~~~ce~----f~typ-rtyDl~Ha~~~~s 716 (796)
|.+|+..|..+..|.+ .. .-+..|-+.....+.+-++. .|+-..++-++-. ++.++ +.|||||-++-=
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H- 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH- 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC-
Confidence 3567667776655543 22 13444555443223333333 3544433333332 33455 899999955421
Q ss_pred cccCCcchHHHHHhhcccccCCcEEEEec
Q 003776 717 KIKKRCNLVAVVAEVDRILRPEGKLIVRD 745 (796)
Q Consensus 717 ~~~~rC~~~~~l~E~DRiLRP~G~~i~rd 745 (796)
.......-|.-+=+.|+|||.+++-|
T Consensus 80 ---~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 ---SYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred ---CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 11233344556667899999999865
No 480
>PTZ00357 methyltransferase; Provisional
Probab=54.02 E-value=37 Score=41.61 Aligned_cols=96 Identities=11% Similarity=0.051 Sum_probs=57.7
Q ss_pred CEEEEECCCCchhHHHHhhC--------CeEEEeCChhhHHHHHHHHHHHc---------CCCeEEEEcCCCCCCCC---
Q 003776 391 RVVLDVGCGVASFGGFLFDR--------GVLTMSFAPKDEHEAQVQFALER---------GIPAISAVMGTERLPFP--- 450 (796)
Q Consensus 391 ~~VLDIGCGtG~~a~~La~~--------~V~gvDiSp~dl~~A~~q~A~er---------gl~~~~~v~d~e~LPfp--- 450 (796)
..|+-+|+|-|-+....+++ +|++|+-.+........+..... |-.+.++..|+..+..+
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 36899999999766555432 68889888543322232322111 12245666676555322
Q ss_pred --------CCceeEEEEcCCCcccccch-HHHHHHHHhhcCC----CcE
Q 003776 451 --------GIVFDAVHCARCRVPWHIEG-GKLLLELNRVLRP----GGF 486 (796)
Q Consensus 451 --------d~SFDlVvss~~~l~w~~d~-~~~L~Ei~RVLKP----GG~ 486 (796)
-+.+|+|||=+..-.-.+.+ +..|.-+.+.||+ +|.
T Consensus 782 ~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 24699999943111112333 7899999999987 776
No 481
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=53.49 E-value=61 Score=35.71 Aligned_cols=93 Identities=12% Similarity=0.134 Sum_probs=51.2
Q ss_pred CCCCEEEEECCCC-chhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCC--CCC----C-C-CCCcee
Q 003776 388 KRTRVVLDVGCGV-ASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT--ERL----P-F-PGIVFD 455 (796)
Q Consensus 388 ~~~~~VLDIGCGt-G~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~--e~L----P-f-pd~SFD 455 (796)
.++.+||-+|||. |.++..+++. .|++++.++.. .+++++.|....+..... ..+ . + ....+|
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~-----~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d 239 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEK-----LEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLR 239 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHH-----HHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCC
Confidence 3578999999854 4455555543 67788776643 355555565322211110 000 0 0 112344
Q ss_pred ----EEEEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 456 ----AVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 456 ----lVvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+|+-.- -....+....++|++||.+++...
T Consensus 240 ~~~d~v~d~~-------g~~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 240 STGWKIFECS-------GSKPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred CCcCEEEECC-------CChHHHHHHHHHHhcCCeEEEECc
Confidence 555322 123567778899999999987643
No 482
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=53.47 E-value=32 Score=39.92 Aligned_cols=65 Identities=15% Similarity=0.176 Sum_probs=41.8
Q ss_pred HHHHHHHHHhCcccccC--CCCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCC
Q 003776 371 LHYIDFIQESVPDVAWG--KRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP 436 (796)
Q Consensus 371 ~~yid~L~e~Lp~i~~~--~~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~ 436 (796)
.+|...|...+..-.+. .....|||||.|||.++.....+ .|+++++-..|...|+ ....+.|..
T Consensus 46 iky~~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~ar-kI~~kng~S 115 (636)
T KOG1501|consen 46 IKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLAR-KIMHKNGMS 115 (636)
T ss_pred HHHHHHHHHHhcccceeccCceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHH-HHHhcCCCc
Confidence 45555565555442221 12346899999999887655543 7999999888877665 555555543
No 483
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=53.09 E-value=23 Score=35.73 Aligned_cols=38 Identities=16% Similarity=0.048 Sum_probs=26.7
Q ss_pred CCCCEEEEECCCCchhHHHHh--hCCeEEEeCChhhHHHH
Q 003776 388 KRTRVVLDVGCGVASFGGFLF--DRGVLTMSFAPKDEHEA 425 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La--~~~V~gvDiSp~dl~~A 425 (796)
.++..|||.=||+|+.+.+.. .|+.+|+|+++.....|
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a 229 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIA 229 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHh
Confidence 468899999999998665554 46899999998665444
No 484
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=52.14 E-value=27 Score=37.41 Aligned_cols=71 Identities=20% Similarity=0.092 Sum_probs=36.4
Q ss_pred CEEEEECCCCchhHHHHhh--CCeEEEeCChhhHHHHH--HHHHHHc-CC------CeEEEEcCC-CCCCCCCCceeEEE
Q 003776 391 RVVLDVGCGVASFGGFLFD--RGVLTMSFAPKDEHEAQ--VQFALER-GI------PAISAVMGT-ERLPFPGIVFDAVH 458 (796)
Q Consensus 391 ~~VLDIGCGtG~~a~~La~--~~V~gvDiSp~dl~~A~--~q~A~er-gl------~~~~~v~d~-e~LPfpd~SFDlVv 458 (796)
.+|||.-+|-|.-+..|+. ..|++++-+|.....-+ .+.+... .. .+..+..+. +-|+.++++||+|+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY 156 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVY 156 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEE
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEE
Confidence 4899999999986665553 48999999986432211 1222221 11 234555554 44666789999999
Q ss_pred EcC
Q 003776 459 CAR 461 (796)
Q Consensus 459 ss~ 461 (796)
.-.
T Consensus 157 ~DP 159 (234)
T PF04445_consen 157 FDP 159 (234)
T ss_dssp E--
T ss_pred ECC
Confidence 965
No 485
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=52.01 E-value=33 Score=39.16 Aligned_cols=98 Identities=16% Similarity=0.087 Sum_probs=61.1
Q ss_pred CCEEEEECCCCchhHHHH-hh----CCeEEEeCChhhHHHHHHHHHHHcCCCe---EEEEcCCCCC-CCCCCceeEEEEc
Q 003776 390 TRVVLDVGCGVASFGGFL-FD----RGVLTMSFAPKDEHEAQVQFALERGIPA---ISAVMGTERL-PFPGIVFDAVHCA 460 (796)
Q Consensus 390 ~~~VLDIGCGtG~~a~~L-a~----~~V~gvDiSp~dl~~A~~q~A~ergl~~---~~~v~d~e~L-Pfpd~SFDlVvss 460 (796)
..+|||.=+|+|.=+... .+ ..|++-|+++..+...+ +.+...++.. .....|+..| ......||+|-.-
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~-~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIK-RNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHH-HHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHH-HhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 458999999999644444 33 27899999997665554 5555666654 3444454332 2245789999764
Q ss_pred CCCcccccchHHHHHHHHhhcCCCcEEEEEeCC
Q 003776 461 RCRVPWHIEGGKLLLELNRVLRPGGFFIWSATP 493 (796)
Q Consensus 461 ~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~~ 493 (796)
. .-.+..+|.-..+.+|.||+|.++.+.
T Consensus 129 P-----fGSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 129 P-----FGSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp ------SS--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred C-----CCCccHhHHHHHHHhhcCCEEEEeccc
Confidence 3 124678999999999999999998763
No 486
>PHA01634 hypothetical protein
Probab=51.28 E-value=68 Score=31.60 Aligned_cols=68 Identities=13% Similarity=-0.047 Sum_probs=41.5
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCceeEEEE
Q 003776 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHC 459 (796)
Q Consensus 389 ~~~~VLDIGCGtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~LPfpd~SFDlVvs 459 (796)
.+.+|||||.+.|..+.+++-+ .|++++.++........ ..+...+ .-........+-.-+.||+.+.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~ee-n~k~nnI--~DK~v~~~eW~~~Y~~~Di~~i 98 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEE-VCAYFNI--CDKAVMKGEWNGEYEDVDIFVM 98 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHH-Hhhhhee--eeceeecccccccCCCcceEEE
Confidence 4789999999999988887653 89999998866544432 2221111 0011112344434456888775
No 487
>PLN02823 spermine synthase
Probab=50.79 E-value=8.4 Score=43.24 Aligned_cols=98 Identities=18% Similarity=0.256 Sum_probs=52.1
Q ss_pred ccccccccCccccceeeeccCC-CeEEEEeecCCCCCChhHHHhhccccccc-------------ccccccCCCCccccc
Q 003776 643 TVRNVMDMRSVYGGFAAAMKDI-SVWVMNVISIDSPDTLPIIYERGLFGIYH-------------DWCESFSTYPRTYDL 708 (796)
Q Consensus 643 ~iRnvmDm~~g~g~faA~l~~~-~vwvmnv~p~~~~~~l~~i~eRGlig~~~-------------~~ce~f~typrtyDl 708 (796)
..|+||-+|+|.|+.+..++.. ++--+-+|=.|. .-+.++ |..++..+ |=..-+..-++.||+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~-~vv~la--r~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQ-EVVDFC--RKHLTVNREAFCDKRLELIINDARAELEKRDEKFDV 179 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCH-HHHHHH--HHhcccccccccCCceEEEEChhHHHHhhCCCCccE
Confidence 5789999999999998877765 343222222222 122221 11122111 111111122468999
Q ss_pred cccccccccccC-Ccc-h--HHHHH-hhcccccCCcEEEEe
Q 003776 709 LHADHLFSKIKK-RCN-L--VAVVA-EVDRILRPEGKLIVR 744 (796)
Q Consensus 709 ~Ha~~~~s~~~~-rC~-~--~~~l~-E~DRiLRP~G~~i~r 744 (796)
|=.+ ++..+.. .|. + ...+- .+-|.|+|||.+++.
T Consensus 180 Ii~D-~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 180 IIGD-LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EEec-CCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 9877 3443321 121 1 12233 578999999999874
No 488
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=50.55 E-value=10 Score=40.10 Aligned_cols=135 Identities=16% Similarity=0.171 Sum_probs=74.1
Q ss_pred ccccccccccccCccccceeeecc----CC-CeEEEEeecCCCCCChhHHHhhcc----cccc-cccccccC-CCCcccc
Q 003776 639 INWSTVRNVMDMRSVYGGFAAAMK----DI-SVWVMNVISIDSPDTLPIIYERGL----FGIY-HDWCESFS-TYPRTYD 707 (796)
Q Consensus 639 i~w~~iRnvmDm~~g~g~faA~l~----~~-~vwvmnv~p~~~~~~l~~i~eRGl----ig~~-~~~ce~f~-typrtyD 707 (796)
+.-...++||.+|.+.|==|..|. +. .+.+.=+-|......-..+-+-|+ .-+. .|+-+-++ ...-+||
T Consensus 55 ~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fD 134 (219)
T COG4122 55 ARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFD 134 (219)
T ss_pred HHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCcc
Confidence 334578999999998773333332 11 133222222111122223334443 2222 47877777 3567999
Q ss_pred ccccccccccccCCcchHHHHHhhcccccCCcEEEEe--------------ccHHHHHHHHHHHhcCCce----EEEeec
Q 003776 708 LLHADHLFSKIKKRCNLVAVVAEVDRILRPEGKLIVR--------------DDVETINELESMVKGMQWE----VRMTYS 769 (796)
Q Consensus 708 l~Ha~~~~s~~~~rC~~~~~l~E~DRiLRP~G~~i~r--------------d~~~~~~~~~~~~~~l~W~----~~~~~~ 769 (796)
||-.++ .+-....+|=+.=++|||||.+|+- +....+..+..+..-+.|. ..+.-
T Consensus 135 liFIDa------dK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP- 207 (219)
T COG4122 135 LVFIDA------DKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLP- 207 (219)
T ss_pred EEEEeC------ChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEe-
Confidence 987332 2233445555566779999999963 2234555566666555554 33331
Q ss_pred cCCceEEEEEec
Q 003776 770 KDKEGLLCVEKS 781 (796)
Q Consensus 770 ~~~e~~l~~~K~ 781 (796)
-.++++++.|.
T Consensus 208 -~gDGl~v~~k~ 218 (219)
T COG4122 208 -LGDGLLLSRKR 218 (219)
T ss_pred -cCCceEEEeec
Confidence 24789999885
No 489
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=49.55 E-value=45 Score=37.60 Aligned_cols=91 Identities=12% Similarity=0.070 Sum_probs=50.4
Q ss_pred CCCEEEEECCC-CchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCCCCC-CCCCCceeEEEEcCCC
Q 003776 389 RTRVVLDVGCG-VASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL-PFPGIVFDAVHCARCR 463 (796)
Q Consensus 389 ~~~~VLDIGCG-tG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~e~L-Pfpd~SFDlVvss~~~ 463 (796)
++.+||-.|+| .|.++..+++. .|++++.+... +..++++.|....+...+...+ ... ..+|+|+-...
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~----~~~~a~~lGa~~~i~~~~~~~v~~~~-~~~D~vid~~G- 251 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEK----EREAIDRLGADSFLVTTDSQKMKEAV-GTMDFIIDTVS- 251 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHH----hHHHHHhCCCcEEEcCcCHHHHHHhh-CCCcEEEECCC-
Confidence 46788888875 33444444443 57777665421 2344455565322111111011 011 24898886431
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEe
Q 003776 464 VPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (796)
Q Consensus 464 l~w~~d~~~~L~Ei~RVLKPGG~fv~s~ 491 (796)
....+....++|++||.++...
T Consensus 252 ------~~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 252 ------AEHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred ------cHHHHHHHHHhhcCCCEEEEEc
Confidence 2346788899999999998653
No 490
>PRK13699 putative methylase; Provisional
Probab=49.45 E-value=56 Score=34.54 Aligned_cols=42 Identities=17% Similarity=0.160 Sum_probs=32.5
Q ss_pred CCCCEEEEECCCCchhHHHHh--hCCeEEEeCChhhHHHHHHHH
Q 003776 388 KRTRVVLDVGCGVASFGGFLF--DRGVLTMSFAPKDEHEAQVQF 429 (796)
Q Consensus 388 ~~~~~VLDIGCGtG~~a~~La--~~~V~gvDiSp~dl~~A~~q~ 429 (796)
.++..|||.=||+|+.+.+.. .++.+|+++++.....+..+.
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~ 205 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRL 205 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHH
Confidence 357899999999998666554 469999999997766665443
No 491
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=49.34 E-value=8.4 Score=39.01 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=18.9
Q ss_pred hHHHHHhhcccccCCcEEEEe
Q 003776 724 LVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 724 ~~~~l~E~DRiLRP~G~~i~r 744 (796)
|..+|-|+-|||+|+|+++|-
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHhhcCCCeeEEEE
Confidence 567899999999999999984
No 492
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=49.32 E-value=2.9 Score=44.25 Aligned_cols=94 Identities=20% Similarity=0.328 Sum_probs=71.0
Q ss_pred cccccCccccceeeeccCC-----CeEEEEeecCCCCCChhHHHhhc-ccccccccccccCCCCcccccc--cccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDI-----SVWVMNVISIDSPDTLPIIYERG-LFGIYHDWCESFSTYPRTYDLL--HADHLFSK 717 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~-----~vwvmnv~p~~~~~~l~~i~eRG-lig~~~~~ce~f~typrtyDl~--Ha~~~~s~ 717 (796)
.||-.||..|+...++.|- .|+.+-+.|+...+-+.++-.|= +|+|+.|=+.|. .|-++ ..+-+|..
T Consensus 76 kVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~-----~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 76 KVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPE-----KYRMLVEMVDVIFQD 150 (229)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGG-----GGTTTS--EEEEEEE
T ss_pred EEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChH-----HhhcccccccEEEec
Confidence 4899999999998887532 68888898888888888888887 999998876443 34332 44556666
Q ss_pred ccCCcchHHHHHhhcccccCCcEEEEe
Q 003776 718 IKKRCNLVAVVAEVDRILRPEGKLIVR 744 (796)
Q Consensus 718 ~~~rC~~~~~l~E~DRiLRP~G~~i~r 744 (796)
.-.+-....+++=+.+-|+|||+++|.
T Consensus 151 VaQp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 151 VAQPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp -SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCChHHHHHHHHHHHhhccCCcEEEEE
Confidence 666666677889999999999999985
No 493
>PLN02672 methionine S-methyltransferase
Probab=49.27 E-value=15 Score=47.35 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=27.6
Q ss_pred HHHHHhhcccccCCcEEEEeccHHHHHHHH-HHHhcCCceE
Q 003776 725 VAVVAEVDRILRPEGKLIVRDDVETINELE-SMVKGMQWEV 764 (796)
Q Consensus 725 ~~~l~E~DRiLRP~G~~i~rd~~~~~~~~~-~~~~~l~W~~ 764 (796)
..|+-+.-++|+|||++++--...--..|. ++....-|..
T Consensus 258 r~i~~~a~~~L~pgG~l~lEiG~~q~~~v~~~l~~~~gf~~ 298 (1082)
T PLN02672 258 ARAVEEGISVIKPMGIMIFNMGGRPGQAVCERLFERRGFRI 298 (1082)
T ss_pred HHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHHHCCCCe
Confidence 467888999999999999974444444566 4665544443
No 494
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=48.88 E-value=12 Score=40.95 Aligned_cols=123 Identities=13% Similarity=0.117 Sum_probs=71.9
Q ss_pred ccccccccccccCccccceeeeccCCCeEEEEeecCCCCCChhHHHhhccccccccccc-------------ccCCCCcc
Q 003776 639 INWSTVRNVMDMRSVYGGFAAAMKDISVWVMNVISIDSPDTLPIIYERGLFGIYHDWCE-------------SFSTYPRT 705 (796)
Q Consensus 639 i~w~~iRnvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~~~l~~i~eRGlig~~~~~ce-------------~f~typrt 705 (796)
+.++..|.||=+|.|-||.+-.+++++- |=.++.++- +--=+.+-|..++..|.++. -...++++
T Consensus 72 ~ah~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEI-D~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~ 149 (282)
T COG0421 72 LAHPNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEI-DPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEK 149 (282)
T ss_pred hhCCCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEc-CHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCc
Confidence 4567789999999999999999988762 111111111 22235677888887774443 12345678
Q ss_pred ccccccccccccccC-Ccch-HHHHHhhcccccCCcEEEEeccH-----HHHHHHHHHHhcCCceE
Q 003776 706 YDLLHADHLFSKIKK-RCNL-VAVVAEVDRILRPEGKLIVRDDV-----ETINELESMVKGMQWEV 764 (796)
Q Consensus 706 yDl~Ha~~~~s~~~~-rC~~-~~~l~E~DRiLRP~G~~i~rd~~-----~~~~~~~~~~~~l~W~~ 764 (796)
||+|=.+. +..... .-+. ....=-..|+|+|+|.++.+-.. +.+..+.+..+.+.+..
T Consensus 150 fDvIi~D~-tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~~ 214 (282)
T COG0421 150 FDVIIVDS-TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSIV 214 (282)
T ss_pred CCEEEEcC-CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhcccc
Confidence 99986332 111000 0011 23455678999999999987111 33444555556664443
No 495
>PLN02827 Alcohol dehydrogenase-like
Probab=48.50 E-value=63 Score=36.34 Aligned_cols=92 Identities=13% Similarity=0.057 Sum_probs=51.7
Q ss_pred CCCCEEEEECCC-CchhHHHHhhC----CeEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCC-CC----C-CCCCCceeE
Q 003776 388 KRTRVVLDVGCG-VASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT-ER----L-PFPGIVFDA 456 (796)
Q Consensus 388 ~~~~~VLDIGCG-tG~~a~~La~~----~V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~-e~----L-Pfpd~SFDl 456 (796)
.++.+||-+|+| .|.++..+++. .|++++.++. +.+++++.|....+..... .. + .+..+.+|+
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~-----~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~ 266 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPE-----KAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADY 266 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHH-----HHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCE
Confidence 357899999874 23343444442 4677776653 3456666665322211110 00 0 011125899
Q ss_pred EEEcCCCcccccchHHHHHHHHhhcCCC-cEEEEEe
Q 003776 457 VHCARCRVPWHIEGGKLLLELNRVLRPG-GFFIWSA 491 (796)
Q Consensus 457 Vvss~~~l~w~~d~~~~L~Ei~RVLKPG-G~fv~s~ 491 (796)
|+-... ....+....++|++| |.+++..
T Consensus 267 vid~~G-------~~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 267 SFECVG-------DTGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred EEECCC-------ChHHHHHHHHhhccCCCEEEEEC
Confidence 986432 234678889999999 9998653
No 496
>PRK04148 hypothetical protein; Provisional
Probab=48.25 E-value=4.4 Score=39.66 Aligned_cols=50 Identities=16% Similarity=0.183 Sum_probs=35.0
Q ss_pred ccccccCccccc-eeeeccCCCeEEEEeecCCCC-CChhHHHhhccccccccccc
Q 003776 645 RNVMDMRSVYGG-FAAAMKDISVWVMNVISIDSP-DTLPIIYERGLFGIYHDWCE 697 (796)
Q Consensus 645 RnvmDm~~g~g~-faA~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~~ce 697 (796)
+-|+|+|||+|. +|..|.+...-|| -+|-. .-++-+-++|+-.+..|+=+
T Consensus 18 ~kileIG~GfG~~vA~~L~~~G~~Vi---aIDi~~~aV~~a~~~~~~~v~dDlf~ 69 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKESGFDVI---VIDINEKAVEKAKKLGLNAFVDDLFN 69 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHCCCEEE---EEECCHHHHHHHHHhCCeEEECcCCC
Confidence 458999999995 8989988765444 33333 45777788887666666644
No 497
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=48.24 E-value=12 Score=37.99 Aligned_cols=45 Identities=16% Similarity=0.313 Sum_probs=32.7
Q ss_pred CCCCccccccccccccccc-----c-CCcchHHH--HHhhcccccCCcEEEEe
Q 003776 700 STYPRTYDLLHADHLFSKI-----K-KRCNLVAV--VAEVDRILRPEGKLIVR 744 (796)
Q Consensus 700 ~typrtyDl~Ha~~~~s~~-----~-~rC~~~~~--l~E~DRiLRP~G~~i~r 744 (796)
-.|+.+||.+-+.+.+... . .-+.+.++ |+++-|+|+|||.+++.
T Consensus 58 ~~y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~ 110 (177)
T PF03269_consen 58 QKYAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLG 110 (177)
T ss_pred HHhhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEE
Confidence 3677999997766665432 2 22455554 89999999999999985
No 498
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=48.06 E-value=99 Score=33.88 Aligned_cols=93 Identities=11% Similarity=0.057 Sum_probs=50.1
Q ss_pred CCCCEEEEECCCC-chhHHHHhhC---C-eEEEeCChhhHHHHHHHHHHHcCCCeEEEEcCC--CCC--CCCCCcee-EE
Q 003776 388 KRTRVVLDVGCGV-ASFGGFLFDR---G-VLTMSFAPKDEHEAQVQFALERGIPAISAVMGT--ERL--PFPGIVFD-AV 457 (796)
Q Consensus 388 ~~~~~VLDIGCGt-G~~a~~La~~---~-V~gvDiSp~dl~~A~~q~A~ergl~~~~~v~d~--e~L--Pfpd~SFD-lV 457 (796)
.++.+||=+|||. |.++..+++. . |++++.++. +.+++++.|....+..... ..+ -.....+| +|
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~-----~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v 233 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSE-----KLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLI 233 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHH-----HHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEE
Confidence 3577999998753 3333444442 3 567776553 3344555554321111100 000 01223577 66
Q ss_pred EEcCCCcccccchHHHHHHHHhhcCCCcEEEEEeC
Q 003776 458 HCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (796)
Q Consensus 458 vss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~s~~ 492 (796)
+-.. -....+.+..++|+|||.+++...
T Consensus 234 ~d~~-------G~~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 234 LETA-------GVPQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred EECC-------CCHHHHHHHHHHhhcCCEEEEEcc
Confidence 5432 124578889999999999997643
No 499
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=47.34 E-value=24 Score=37.91 Aligned_cols=131 Identities=21% Similarity=0.267 Sum_probs=0.0
Q ss_pred cccccCccccceeeeccCCCeEEEEeecCCCC-CChhHH--Hhhccccc-----ccccccccCCCCcc-ccc-ccccccc
Q 003776 646 NVMDMRSVYGGFAAAMKDISVWVMNVISIDSP-DTLPII--YERGLFGI-----YHDWCESFSTYPRT-YDL-LHADHLF 715 (796)
Q Consensus 646 nvmDm~~g~g~faA~l~~~~vwvmnv~p~~~~-~~l~~i--~eRGlig~-----~~~~ce~f~typrt-yDl-~Ha~~~~ 715 (796)
+|||+=.|.|=+|+.-+++.-.-+=.+-+|.. -+|--+ +-|||.-+ ++|--+...+|+-. ||. ||---=|
T Consensus 137 rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRf 216 (287)
T COG2521 137 RVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPRF 216 (287)
T ss_pred EeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeCCCcc
Q ss_pred ccccCCcchHHHHHhhcccccCCcEEEEe--------ccHHHHHHHHHHHhcCCce-EEEeeccCCceE-EEEEec
Q 003776 716 SKIKKRCNLVAVVAEVDRILRPEGKLIVR--------DDVETINELESMVKGMQWE-VRMTYSKDKEGL-LCVEKS 781 (796)
Q Consensus 716 s~~~~rC~~~~~l~E~DRiLRP~G~~i~r--------d~~~~~~~~~~~~~~l~W~-~~~~~~~~~e~~-l~~~K~ 781 (796)
|.-. .-=-..+--|+-|||||||-+.-- --.+....|.+-+++.-.. +... .+.+ ++|+|+
T Consensus 217 S~Ag-eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~----~~~~gv~A~k~ 287 (287)
T COG2521 217 SLAG-ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKV----REALGVVAVKP 287 (287)
T ss_pred chhh-hHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeee----hhccceEEecC
No 500
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=46.94 E-value=92 Score=33.99 Aligned_cols=89 Identities=17% Similarity=0.076 Sum_probs=0.0
Q ss_pred CCCCEEEEECC--CCchhHHHHhhC---CeEEEeCChhhHHHHHHHHHHH-cCCCeEEEEcCCCCCC-----CCCCceeE
Q 003776 388 KRTRVVLDVGC--GVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALE-RGIPAISAVMGTERLP-----FPGIVFDA 456 (796)
Q Consensus 388 ~~~~~VLDIGC--GtG~~a~~La~~---~V~gvDiSp~dl~~A~~q~A~e-rgl~~~~~v~d~e~LP-----fpd~SFDl 456 (796)
.++.+||=.|+ |.|.++..|++. .|+++..++ .+.+++++ .|....+...+...+. ...+.+|+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~-----~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~ 224 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSD-----EKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDI 224 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEE
Q ss_pred EEEcCCCcccccchHHHHHHHHhhcCCCcEEEE
Q 003776 457 VHCARCRVPWHIEGGKLLLELNRVLRPGGFFIW 489 (796)
Q Consensus 457 Vvss~~~l~w~~d~~~~L~Ei~RVLKPGG~fv~ 489 (796)
|+-.. ....+.+..++|+++|.++.
T Consensus 225 v~d~~--------g~~~~~~~~~~l~~~G~iv~ 249 (338)
T cd08295 225 YFDNV--------GGKMLDAVLLNMNLHGRIAA 249 (338)
T ss_pred EEECC--------CHHHHHHHHHHhccCcEEEE
Done!