Query 003778
Match_columns 796
No_of_seqs 370 out of 927
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 03:43:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2akf_A Coronin-1A; coiled coil 39.2 65 0.0022 22.2 4.9 29 120-152 3-31 (32)
2 2l2r_A Antimicrobial peptide e 29.5 16 0.00054 26.1 0.7 10 628-637 9-18 (37)
3 2xus_A Breast cancer metastasi 25.0 1.1E+02 0.0036 23.8 4.7 27 130-156 21-47 (49)
4 2pnv_A Small conductance calci 23.5 91 0.0031 23.5 4.0 24 133-156 15-38 (43)
5 2oxj_A Hybrid alpha/beta pepti 23.3 1.1E+02 0.0036 21.9 4.0 23 134-156 8-30 (34)
6 1kd8_B GABH BLL, GCN4 acid bas 20.5 1.4E+02 0.0047 21.6 4.1 24 133-156 7-30 (36)
7 2l5g_B Putative uncharacterize 20.4 1.5E+02 0.0053 22.1 4.6 29 116-148 9-37 (42)
8 3m48_A General control protein 20.2 1.3E+02 0.0046 21.3 4.0 23 134-156 7-29 (33)
9 2r2v_A GCN4 leucine zipper; co 19.8 1.4E+02 0.0047 21.4 4.0 23 134-156 8-30 (34)
10 3c3f_A Alpha/beta peptide with 19.4 1.4E+02 0.0049 21.2 4.0 23 134-156 8-30 (34)
No 1
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=39.17 E-value=65 Score=22.21 Aligned_cols=29 Identities=14% Similarity=0.327 Sum_probs=21.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003778 120 CLDMQLNKVNQFYKAKEKEFLDRGESLKKQMEI 152 (796)
Q Consensus 120 ~LD~El~KV~~Fy~~K~~e~~~r~~~L~~q~~~ 152 (796)
+|++|+.|.+.- .+++.+|++.|++-+.+
T Consensus 3 rlee~~r~l~~i----vq~lq~r~drle~tvqa 31 (32)
T 2akf_A 3 RLEEDVRNLNAI----VQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH----HHHHHHHHHHHHHHHhc
Confidence 678888887653 56788888888876653
No 2
>2l2r_A Antimicrobial peptide ecamp1; disulfide-stabilized helical hairpin, antifungal peptide, antimicrobial protein; NMR {Echinochloa crus-galli}
Probab=29.53 E-value=16 Score=26.12 Aligned_cols=10 Identities=60% Similarity=0.837 Sum_probs=8.8
Q ss_pred HHhHHHhhcc
Q 003778 628 MQCARRWFDE 637 (796)
Q Consensus 628 ~QClRRy~dt 637 (796)
.||+|||.|.
T Consensus 9 rqC~Rr~ede 18 (37)
T 2l2r_A 9 SQCMRRHEDE 18 (37)
T ss_dssp HHHHHHTSSC
T ss_pred HHHHHhccCC
Confidence 5999999886
No 3
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=24.96 E-value=1.1e+02 Score=23.83 Aligned_cols=27 Identities=33% Similarity=0.341 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003778 130 QFYKAKEKEFLDRGESLKKQMEILIEL 156 (796)
Q Consensus 130 ~Fy~~K~~e~~~r~~~L~~q~~~l~~~ 156 (796)
.|-.-||+-+.+|+..+++|++++.+-
T Consensus 21 qF~~LkEqlY~ERl~ql~~~Leel~~g 47 (49)
T 2xus_A 21 QFSELKEKLFRERLSQLRLRLEEVGAE 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 677888999999999999999988653
No 4
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=23.46 E-value=91 Score=23.53 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003778 133 KAKEKEFLDRGESLKKQMEILIEL 156 (796)
Q Consensus 133 ~~K~~e~~~r~~~L~~q~~~l~~~ 156 (796)
.+..+++.+|+..|+.+++.|.+.
T Consensus 15 ~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 15 NERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999999999998764
No 5
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=23.34 E-value=1.1e+02 Score=21.91 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003778 134 AKEKEFLDRGESLKKQMEILIEL 156 (796)
Q Consensus 134 ~K~~e~~~r~~~L~~q~~~l~~~ 156 (796)
.|++|++.+=+.|+.++..|.+.
T Consensus 8 ~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 8 XKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHH
Confidence 56777777777777777777653
No 6
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=20.53 E-value=1.4e+02 Score=21.58 Aligned_cols=24 Identities=29% Similarity=0.219 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003778 133 KAKEKEFLDRGESLKKQMEILIEL 156 (796)
Q Consensus 133 ~~K~~e~~~r~~~L~~q~~~l~~~ 156 (796)
..|++|+..+-..|+.++..|.+.
T Consensus 7 E~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 7 KAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 357788888888888888777654
No 7
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=20.36 E-value=1.5e+02 Score=22.14 Aligned_cols=29 Identities=10% Similarity=0.274 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003778 116 EFFECLDMQLNKVNQFYKAKEKEFLDRGESLKK 148 (796)
Q Consensus 116 ~F~~~LD~El~KV~~Fy~~K~~e~~~r~~~L~~ 148 (796)
.=..+.|.|++|+. +|-.++..|+..|++
T Consensus 9 qkI~kVdrEI~Kte----~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 9 QNMDRVDREITMVE----QQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 34677889998885 455555555555543
No 8
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=20.17 E-value=1.3e+02 Score=21.29 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003778 134 AKEKEFLDRGESLKKQMEILIEL 156 (796)
Q Consensus 134 ~K~~e~~~r~~~L~~q~~~l~~~ 156 (796)
.|++|+..+-..|+.++..|.+.
T Consensus 7 ~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 7 AKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 57788888888888888777653
No 9
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=19.83 E-value=1.4e+02 Score=21.36 Aligned_cols=23 Identities=13% Similarity=0.081 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003778 134 AKEKEFLDRGESLKKQMEILIEL 156 (796)
Q Consensus 134 ~K~~e~~~r~~~L~~q~~~l~~~ 156 (796)
.|.+|+..+...|+.|+..|.+.
T Consensus 8 dKvEel~~~~~~l~nEv~Rl~~l 30 (34)
T 2r2v_A 8 DKLEEVASKLYHNANELARVAKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 57778888888888887776653
No 10
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=19.36 E-value=1.4e+02 Score=21.20 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003778 134 AKEKEFLDRGESLKKQMEILIEL 156 (796)
Q Consensus 134 ~K~~e~~~r~~~L~~q~~~l~~~ 156 (796)
.|++|+..+-..|+.++..|.+.
T Consensus 8 dKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 8 XKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHH
Confidence 46677777777777777776553
Done!