Query 003778
Match_columns 796
No_of_seqs 370 out of 927
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 03:44:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003778.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003778hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r8ea1 a.6.1.3 (A:3-120) Tran 11.2 1.3E+02 0.0098 24.3 5.0 43 121-163 71-113 (118)
2 d1khba1 c.91.1.1 (A:260-622) C 10.5 1E+02 0.0073 31.0 4.4 34 119-152 324-362 (363)
3 d1fxkc_ a.2.5.1 (C:) Prefoldin 6.4 4.2E+02 0.031 21.4 6.3 24 12-35 23-46 (133)
4 d2e74h1 f.23.27.1 (H:3-29) Pet 5.7 2.3E+02 0.017 17.1 2.8 17 452-468 10-26 (27)
5 d1wfda_ a.7.14.1 (A:) Hypothet 5.6 3.1E+02 0.023 21.4 4.6 23 128-150 57-79 (93)
6 d2d8da1 a.130.1.1 (A:3-82) Cho 5.5 2.7E+02 0.02 20.8 4.1 29 135-163 2-30 (80)
7 d2nsza1 a.118.1.14 (A:322-450) 5.4 1.6E+02 0.012 24.6 2.8 31 363-393 4-34 (129)
8 d1yf2a2 d.287.1.2 (A:221-425) 4.9 4.8E+02 0.035 21.4 6.0 23 139-161 171-193 (205)
9 d1ykhb1 a.252.1.1 (B:2-130) RN 4.7 8.1E+02 0.059 20.1 7.1 39 112-154 87-125 (129)
10 d1ydxa2 d.287.1.2 (A:194-374) 4.6 5.2E+02 0.038 21.1 6.0 22 139-160 151-172 (181)
No 1
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=11.23 E-value=1.3e+02 Score=24.32 Aligned_cols=43 Identities=16% Similarity=0.383 Sum_probs=29.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003778 121 LDMQLNKVNQFYKAKEKEFLDRGESLKKQMEILIELKTALKKK 163 (796)
Q Consensus 121 LD~El~KV~~Fy~~K~~e~~~r~~~L~~q~~~l~~~r~~~~~~ 163 (796)
||...+.+.....++.+++.+++..|+.+.+.+...+..+++.
T Consensus 71 l~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~l~~~ 113 (118)
T d1r8ea1 71 QDLEMEELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQ 113 (118)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666777777888888888877777777666655443
No 2
>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.46 E-value=1e+02 Score=30.96 Aligned_cols=34 Identities=15% Similarity=0.257 Sum_probs=25.5
Q ss_pred HHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 003778 119 ECLDMQLNKVNQFYKAKEK-----EFLDRGESLKKQMEI 152 (796)
Q Consensus 119 ~~LD~El~KV~~Fy~~K~~-----e~~~r~~~L~~q~~~ 152 (796)
+...+|++.+.++|.+|.+ |+.++++.|++.+.+
T Consensus 324 ~~w~~E~~~i~~~f~~~~g~~LP~el~~eL~~Lk~RL~~ 362 (363)
T d1khba1 324 EFWDKEVEDIEKYLVDQVNADLPCEIEREILALKQRISQ 362 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhc
Confidence 5567899999999987763 777777777766654
No 3
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=6.35 E-value=4.2e+02 Score=21.41 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=17.8
Q ss_pred CchhhHHhhcChhhHHHHHHHhhh
Q 003778 12 LVPEWKEAFVDYWQLKKDIKKIHL 35 (796)
Q Consensus 12 ~~peW~~~Yi~Y~~LKk~lk~i~~ 35 (796)
.+..|+..--+|..++..|+.+..
T Consensus 23 ~i~~l~~~~~e~~~~~~~L~~l~~ 46 (133)
T d1fxkc_ 23 QMEAVRATISELEILEKTLSDIQG 46 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356677777788888888887753
No 4
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.72 E-value=2.3e+02 Score=17.11 Aligned_cols=17 Identities=18% Similarity=0.614 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhhcC
Q 003778 452 LHLFLYGCNIFMWKKAR 468 (796)
Q Consensus 452 L~~~l~g~n~~iW~~~~ 468 (796)
|..|-|++.+-+|.|.|
T Consensus 10 lvvftwsiamvvwgrng 26 (27)
T d2e74h1 10 LVVFTWSIAMVVWGRNG 26 (27)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHhhheeeeEEEccCC
Confidence 34566778888898876
No 5
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.61 E-value=3.1e+02 Score=21.39 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003778 128 VNQFYKAKEKEFLDRGESLKKQM 150 (796)
Q Consensus 128 V~~Fy~~K~~e~~~r~~~L~~q~ 150 (796)
...-+++|..|+++|++.|.+.+
T Consensus 57 ~k~~l~~k~~eYl~RAE~LK~~l 79 (93)
T d1wfda_ 57 KRCVLRTKISGYMDRAENIKKYL 79 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578899999999999887654
No 6
>d2d8da1 a.130.1.1 (A:3-82) Chorismate mutase domain of P-protein {Thermus thermophilus [TaxId: 274]}
Probab=5.50 E-value=2.7e+02 Score=20.83 Aligned_cols=29 Identities=7% Similarity=0.185 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003778 135 KEKEFLDRGESLKKQMEILIELKTALKKK 163 (796)
Q Consensus 135 K~~e~~~r~~~L~~q~~~l~~~r~~~~~~ 163 (796)
+-+++-++++.+-.|+-+|++.|..+..+
T Consensus 2 ~L~~lR~~ID~iD~~i~~Ll~~R~~~~~~ 30 (80)
T d2d8da1 2 RIQALRKEVDRVNREILRLLSERGRLVQE 30 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999999655433
No 7
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.36 E-value=1.6e+02 Score=24.59 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHhcccc
Q 003778 363 MNLADEVEELFIKHFADENRRKAMKYLKIHQ 393 (796)
Q Consensus 363 ~~li~~vE~ly~~~F~~gnrkkA~~~LR~~~ 393 (796)
+.|..+++.+...||.+||.+.|..-++...
T Consensus 4 ~~l~kk~~~ll~EY~~~~D~~Ea~~~l~eL~ 34 (129)
T d2nsza1 4 NHLVKEIDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4677889999999999999999999888653
No 8
>d1yf2a2 d.287.1.2 (A:221-425) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=4.92 E-value=4.8e+02 Score=21.41 Aligned_cols=23 Identities=22% Similarity=0.106 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 003778 139 FLDRGESLKKQMEILIELKTALK 161 (796)
Q Consensus 139 ~~~r~~~L~~q~~~l~~~r~~~~ 161 (796)
+.++++.+++|++.|.+.|..+-
T Consensus 171 id~~i~~~~~~~~~l~~~k~~Ll 193 (205)
T d1yf2a2 171 VDKSIELKKQKKEKLQRMKKKIM 193 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666766665443
No 9
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.74 E-value=8.1e+02 Score=20.08 Aligned_cols=39 Identities=18% Similarity=0.341 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003778 112 DATKEFFECLDMQLNKVNQFYKAKEKEFLDRGESLKKQMEILI 154 (796)
Q Consensus 112 ~~e~~F~~~LD~El~KV~~Fy~~K~~e~~~r~~~L~~q~~~l~ 154 (796)
+....=.+.|..|+..+.. +-.++.++.+.|-++++.++
T Consensus 87 e~Q~~~i~~Le~E~~~~~~----el~~~v~e~e~ll~~i~~~i 125 (129)
T d1ykhb1 87 EEQLRKIDMLQKKLVEVED----EKIEAIKKKEKLMRHVDSMI 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 3334455666666666653 23344444555555555554
No 10
>d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=4.63 E-value=5.2e+02 Score=21.10 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003778 139 FLDRGESLKKQMEILIELKTAL 160 (796)
Q Consensus 139 ~~~r~~~L~~q~~~l~~~r~~~ 160 (796)
+.++++.++++++.|.+.|..+
T Consensus 151 ~d~~i~~~~~~i~~l~~lk~~L 172 (181)
T d1ydxa2 151 LDQKLDQYKKELSSLTVIRDTL 172 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666543
Done!