Query 003779
Match_columns 796
No_of_seqs 28 out of 30
Neff 2.7
Searched_HMMs 46136
Date Thu Mar 28 11:53:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003779.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003779hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02168 SMC_prok_B chromosom 98.5 0.00017 3.7E-09 83.1 30.2 165 440-604 677-841 (1179)
2 TIGR02169 SMC_prok_A chromosom 98.3 0.00038 8.2E-09 80.9 29.4 168 439-606 673-845 (1164)
3 TIGR02168 SMC_prok_B chromosom 98.3 0.00032 6.9E-09 80.9 27.9 100 440-539 684-783 (1179)
4 PRK02224 chromosome segregatio 98.3 0.00082 1.8E-08 77.7 30.3 12 227-238 25-36 (880)
5 TIGR02169 SMC_prok_A chromosom 98.3 0.003 6.6E-08 73.6 34.2 47 440-486 237-283 (1164)
6 COG1196 Smc Chromosome segrega 98.1 0.0062 1.4E-07 73.8 32.1 56 549-604 867-922 (1163)
7 KOG0161 Myosin class II heavy 98.0 0.0019 4.2E-08 81.7 27.4 237 464-738 890-1144(1930)
8 PRK02224 chromosome segregatio 97.9 0.019 4.2E-07 66.7 31.1 165 440-604 258-429 (880)
9 COG1196 Smc Chromosome segrega 97.9 0.011 2.4E-07 71.7 30.1 242 441-737 668-923 (1163)
10 PF09726 Macoilin: Transmembra 97.8 0.11 2.4E-06 61.0 34.8 237 436-740 414-657 (697)
11 PF07888 CALCOCO1: Calcium bin 97.7 0.069 1.5E-06 61.4 31.5 153 445-604 141-300 (546)
12 KOG0161 Myosin class II heavy 97.7 0.0047 1E-07 78.4 23.3 159 446-604 1371-1543(1930)
13 TIGR00606 rad50 rad50. This fa 97.7 0.0073 1.6E-07 74.0 24.3 164 439-602 743-931 (1311)
14 PF07888 CALCOCO1: Calcium bin 97.6 0.0095 2.1E-07 68.1 21.4 60 684-743 403-462 (546)
15 PRK11637 AmiB activator; Provi 97.5 0.044 9.4E-07 59.7 25.0 79 437-515 44-122 (428)
16 PRK03918 chromosome segregatio 97.4 0.47 1E-05 55.3 32.5 63 442-504 202-274 (880)
17 PHA02562 46 endonuclease subun 97.3 0.043 9.3E-07 60.3 22.0 68 440-507 174-245 (562)
18 PF05701 WEMBL: Weak chloropla 97.2 0.28 6.1E-06 55.6 28.1 217 483-736 282-512 (522)
19 PF08317 Spc7: Spc7 kinetochor 97.2 0.03 6.4E-07 59.5 19.4 44 560-603 245-292 (325)
20 KOG0250 DNA repair protein RAD 97.2 0.056 1.2E-06 65.7 23.4 140 464-603 298-445 (1074)
21 TIGR00606 rad50 rad50. This fa 97.2 0.047 1E-06 67.3 22.7 125 478-604 891-1015(1311)
22 PHA02562 46 endonuclease subun 97.2 0.097 2.1E-06 57.7 23.0 167 437-603 178-381 (562)
23 KOG1029 Endocytic adaptor prot 97.2 0.14 3E-06 61.0 25.0 141 569-750 468-620 (1118)
24 TIGR01843 type_I_hlyD type I s 97.1 0.13 2.8E-06 54.0 22.5 74 539-612 197-282 (423)
25 PF12128 DUF3584: Protein of u 97.1 0.091 2E-06 64.5 24.3 57 684-740 813-869 (1201)
26 PF15070 GOLGA2L5: Putative go 97.1 0.29 6.4E-06 57.0 26.7 39 684-722 346-384 (617)
27 TIGR02680 conserved hypothetic 97.1 1.6 3.4E-05 55.0 34.9 111 428-543 208-323 (1353)
28 TIGR01843 type_I_hlyD type I s 97.0 0.2 4.3E-06 52.6 22.6 63 544-606 195-265 (423)
29 PRK11637 AmiB activator; Provi 97.0 0.32 7E-06 53.1 25.0 73 440-512 54-126 (428)
30 KOG0980 Actin-binding protein 97.0 0.27 5.8E-06 59.2 25.3 158 444-605 334-519 (980)
31 PRK09039 hypothetical protein; 96.9 0.12 2.6E-06 55.9 20.3 73 527-599 112-184 (343)
32 COG0419 SbcC ATPase involved i 96.9 1.6 3.6E-05 52.2 31.2 21 441-461 233-253 (908)
33 smart00787 Spc7 Spc7 kinetocho 96.8 0.11 2.3E-06 55.9 19.3 76 527-602 207-286 (312)
34 KOG0971 Microtubule-associated 96.8 0.17 3.7E-06 61.0 22.1 107 490-596 326-440 (1243)
35 PRK03918 chromosome segregatio 96.8 0.35 7.5E-06 56.3 24.6 74 523-596 251-330 (880)
36 COG1579 Zn-ribbon protein, pos 96.8 0.054 1.2E-06 56.6 16.3 118 489-606 10-136 (239)
37 PF12718 Tropomyosin_1: Tropom 96.8 0.22 4.7E-06 48.1 19.2 132 464-599 10-141 (143)
38 PRK04863 mukB cell division pr 96.8 0.11 2.4E-06 65.4 21.4 170 439-612 313-489 (1486)
39 COG1579 Zn-ribbon protein, pos 96.8 0.32 6.9E-06 51.1 21.4 159 449-607 12-187 (239)
40 PRK04778 septation ring format 96.7 0.16 3.4E-06 57.9 20.6 146 459-604 315-465 (569)
41 KOG0964 Structural maintenance 96.7 1.3 2.7E-05 54.4 28.1 152 461-612 230-382 (1200)
42 PRK04863 mukB cell division pr 96.7 1.2 2.5E-05 56.8 29.1 138 447-584 283-429 (1486)
43 PF15619 Lebercilin: Ciliary p 96.6 0.95 2.1E-05 46.0 23.5 162 440-605 19-189 (194)
44 PF00038 Filament: Intermediat 96.6 0.43 9.4E-06 49.3 21.1 48 693-740 211-258 (312)
45 PF09730 BicD: Microtubule-ass 96.6 2.6 5.6E-05 50.4 37.9 170 431-603 256-456 (717)
46 KOG0612 Rho-associated, coiled 96.6 0.23 5.1E-06 61.3 21.5 168 437-607 462-650 (1317)
47 PRK09039 hypothetical protein; 96.5 0.19 4.1E-06 54.3 18.2 109 435-550 48-156 (343)
48 PF05622 HOOK: HOOK protein; 96.5 0.0007 1.5E-08 78.0 0.0 162 444-605 197-402 (713)
49 PF09789 DUF2353: Uncharacteri 96.4 0.14 3.1E-06 55.5 16.4 141 455-604 66-220 (319)
50 COG4372 Uncharacterized protei 96.2 0.13 2.9E-06 57.3 15.6 104 490-600 75-178 (499)
51 PF12128 DUF3584: Protein of u 96.2 5.1 0.00011 49.9 32.4 56 684-739 607-662 (1201)
52 PF04156 IncA: IncA protein; 96.2 0.24 5.3E-06 48.0 15.7 66 486-551 85-150 (191)
53 PF14662 CCDC155: Coiled-coil 96.2 1.8 3.9E-05 44.6 22.1 126 442-574 10-138 (193)
54 KOG0250 DNA repair protein RAD 96.2 0.65 1.4E-05 57.0 21.9 166 438-604 233-432 (1074)
55 PF09726 Macoilin: Transmembra 96.1 0.6 1.3E-05 55.2 21.2 129 470-604 462-611 (697)
56 PF08614 ATG16: Autophagy prot 96.1 0.069 1.5E-06 52.9 11.7 116 440-555 74-189 (194)
57 PF04111 APG6: Autophagy prote 96.1 0.085 1.8E-06 56.4 13.2 115 490-604 10-130 (314)
58 PRK10361 DNA recombination pro 96.1 0.76 1.7E-05 52.4 21.1 127 467-594 39-179 (475)
59 PF04111 APG6: Autophagy prote 96.1 0.087 1.9E-06 56.3 12.8 126 442-607 11-136 (314)
60 PF08614 ATG16: Autophagy prot 96.0 0.027 5.8E-07 55.7 8.4 131 477-607 19-171 (194)
61 PF09730 BicD: Microtubule-ass 96.0 5.2 0.00011 48.0 32.0 122 459-598 39-171 (717)
62 KOG0994 Extracellular matrix g 96.0 1.1 2.3E-05 55.8 22.4 131 475-605 1605-1742(1758)
63 TIGR01000 bacteriocin_acc bact 96.0 1.6 3.5E-05 48.2 22.4 74 539-612 237-327 (457)
64 PF13851 GAS: Growth-arrest sp 95.9 1.2 2.6E-05 45.1 19.7 104 490-593 28-134 (201)
65 PF00261 Tropomyosin: Tropomyo 95.9 2.4 5.2E-05 43.5 23.8 45 442-486 3-47 (237)
66 KOG4674 Uncharacterized conser 95.9 5.7 0.00012 51.6 29.2 52 521-572 728-779 (1822)
67 PF10174 Cast: RIM-binding pro 95.9 2.9 6.3E-05 50.3 25.5 70 463-532 331-400 (775)
68 smart00787 Spc7 Spc7 kinetocho 95.9 1.6 3.5E-05 47.2 21.3 9 430-438 101-109 (312)
69 KOG0996 Structural maintenance 95.9 2.1 4.6E-05 53.3 24.3 59 686-744 544-602 (1293)
70 cd07651 F-BAR_PombeCdc15_like 95.8 1.1 2.5E-05 45.3 19.1 134 459-598 58-206 (236)
71 PF14197 Cep57_CLD_2: Centroso 95.8 0.079 1.7E-06 46.1 9.4 65 487-551 3-67 (69)
72 KOG0933 Structural maintenance 95.8 0.99 2.1E-05 55.3 21.3 167 437-606 738-932 (1174)
73 PF08317 Spc7: Spc7 kinetochor 95.8 1.3 2.9E-05 47.3 20.2 9 430-438 106-114 (325)
74 TIGR02680 conserved hypothetic 95.8 1.5 3.2E-05 55.2 23.4 95 440-537 230-324 (1353)
75 PF12718 Tropomyosin_1: Tropom 95.8 1.3 2.9E-05 42.9 18.2 127 471-604 3-132 (143)
76 KOG4673 Transcription factor T 95.7 4.7 0.0001 48.3 25.5 243 476-754 399-647 (961)
77 KOG0977 Nuclear envelope prote 95.7 0.83 1.8E-05 52.9 19.3 46 686-731 323-368 (546)
78 PRK11281 hypothetical protein; 95.6 0.34 7.3E-06 59.9 16.8 51 488-538 127-177 (1113)
79 PF00261 Tropomyosin: Tropomyo 95.6 2.1 4.6E-05 43.8 19.9 83 522-604 125-221 (237)
80 KOG0996 Structural maintenance 95.6 1.8 4E-05 53.8 22.3 148 442-592 414-568 (1293)
81 PRK04778 septation ring format 95.5 1.5 3.2E-05 50.2 20.5 160 437-598 253-415 (569)
82 KOG0933 Structural maintenance 95.5 0.83 1.8E-05 55.9 19.0 163 435-597 782-944 (1174)
83 KOG4674 Uncharacterized conser 95.5 1.8 3.9E-05 55.9 22.7 257 443-736 62-336 (1822)
84 PF13166 AAA_13: AAA domain 95.5 1.7 3.7E-05 49.7 20.9 119 484-604 324-455 (712)
85 PF10186 Atg14: UV radiation r 95.4 2 4.2E-05 43.5 19.0 25 441-465 21-45 (302)
86 PF10481 CENP-F_N: Cenp-F N-te 95.4 2 4.3E-05 46.6 19.6 102 440-548 18-126 (307)
87 PF13514 AAA_27: AAA domain 95.4 1.3 2.8E-05 54.2 20.7 42 692-733 453-494 (1111)
88 KOG0995 Centromere-associated 95.4 1.4 3E-05 51.3 19.6 58 686-743 448-512 (581)
89 PF10186 Atg14: UV radiation r 95.4 1.8 3.9E-05 43.7 18.5 10 670-679 224-233 (302)
90 KOG0976 Rho/Rac1-interacting s 95.3 6.6 0.00014 47.9 25.1 150 446-605 47-205 (1265)
91 PF12795 MscS_porin: Mechanose 95.3 1.4 3E-05 45.0 17.5 165 439-603 37-208 (240)
92 PF04849 HAP1_N: HAP1 N-termin 95.3 1.3 2.8E-05 48.3 18.0 163 439-608 61-255 (306)
93 TIGR03007 pepcterm_ChnLen poly 95.2 1.1 2.4E-05 49.3 17.8 34 441-474 198-231 (498)
94 PF10174 Cast: RIM-binding pro 95.2 5.1 0.00011 48.3 24.0 103 470-572 303-405 (775)
95 COG1842 PspA Phage shock prote 95.1 2.3 5.1E-05 44.2 18.7 115 441-578 25-139 (225)
96 PF00769 ERM: Ezrin/radixin/mo 95.1 1 2.2E-05 46.9 16.2 108 491-605 14-121 (246)
97 PF05557 MAD: Mitotic checkpoi 95.1 0.0059 1.3E-07 70.5 0.0 55 687-741 367-421 (722)
98 PF04849 HAP1_N: HAP1 N-termin 95.0 2.4 5.2E-05 46.3 19.0 151 434-601 154-304 (306)
99 PF05701 WEMBL: Weak chloropla 94.9 6.9 0.00015 44.8 23.3 148 460-607 287-441 (522)
100 cd07647 F-BAR_PSTPIP The F-BAR 94.9 4.1 9E-05 41.7 19.5 130 458-593 57-202 (239)
101 PF09755 DUF2046: Uncharacteri 94.8 7.8 0.00017 42.6 31.1 41 443-483 23-63 (310)
102 KOG0976 Rho/Rac1-interacting s 94.8 7.8 0.00017 47.3 23.6 59 678-745 457-521 (1265)
103 KOG0243 Kinesin-like protein [ 94.8 2.4 5.2E-05 52.3 20.2 137 463-606 443-586 (1041)
104 KOG0979 Structural maintenance 94.7 3.4 7.5E-05 50.9 20.9 178 428-608 141-360 (1072)
105 PF05667 DUF812: Protein of un 94.6 8.4 0.00018 45.3 23.3 159 448-606 343-531 (594)
106 cd07655 F-BAR_PACSIN The F-BAR 94.5 5.6 0.00012 41.4 19.8 130 458-593 61-217 (258)
107 COG4942 Membrane-bound metallo 94.5 11 0.00024 42.9 24.2 61 544-604 184-244 (420)
108 TIGR03007 pepcterm_ChnLen poly 94.5 7.3 0.00016 43.1 21.7 33 516-548 260-292 (498)
109 PF04156 IncA: IncA protein; 94.4 2.3 5E-05 41.4 15.7 29 474-502 94-122 (191)
110 PF05557 MAD: Mitotic checkpoi 94.3 0.04 8.7E-07 63.9 4.3 138 452-596 286-429 (722)
111 PF00038 Filament: Intermediat 94.3 7.7 0.00017 40.3 31.9 164 443-606 28-228 (312)
112 PF05667 DUF812: Protein of un 94.3 6.8 0.00015 46.0 21.7 90 451-540 325-417 (594)
113 PF11932 DUF3450: Protein of u 94.3 3.8 8.3E-05 42.1 17.8 63 459-521 33-95 (251)
114 TIGR01010 BexC_CtrB_KpsE polys 94.2 2.8 6.1E-05 44.7 17.2 64 489-552 170-235 (362)
115 KOG0612 Rho-associated, coiled 94.1 17 0.00038 46.0 25.4 29 715-743 789-817 (1317)
116 PF13514 AAA_27: AAA domain 94.1 8.4 0.00018 47.4 23.0 51 566-616 452-502 (1111)
117 cd07671 F-BAR_PSTPIP1 The F-BA 94.0 4.9 0.00011 41.9 18.1 120 468-593 78-202 (242)
118 KOG4593 Mitotic checkpoint pro 94.0 9.1 0.0002 45.9 22.0 110 495-605 164-293 (716)
119 KOG0999 Microtubule-associated 93.9 11 0.00023 44.6 21.9 77 518-598 150-244 (772)
120 KOG1103 Predicted coiled-coil 93.9 12 0.00025 42.3 21.5 68 456-523 105-173 (561)
121 PF00769 ERM: Ezrin/radixin/mo 93.7 4.8 0.0001 42.0 17.3 23 583-605 106-128 (246)
122 TIGR01000 bacteriocin_acc bact 93.7 7.4 0.00016 43.1 19.7 53 556-608 240-312 (457)
123 KOG0999 Microtubule-associated 93.7 19 0.00042 42.6 24.9 124 471-604 92-218 (772)
124 KOG0980 Actin-binding protein 93.6 14 0.0003 45.5 22.8 60 686-745 684-755 (980)
125 KOG0977 Nuclear envelope prote 93.5 19 0.00042 42.2 27.3 105 440-544 92-217 (546)
126 cd07653 F-BAR_CIP4-like The F- 93.4 10 0.00022 38.5 18.9 76 458-533 62-149 (251)
127 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.4 7.3 0.00016 36.9 18.4 34 571-604 96-129 (132)
128 PRK10476 multidrug resistance 93.4 2.5 5.4E-05 44.7 14.9 27 586-612 189-219 (346)
129 PF05622 HOOK: HOOK protein; 93.3 0.024 5.2E-07 65.7 0.0 29 521-549 329-357 (713)
130 KOG0995 Centromere-associated 93.2 18 0.00038 42.7 22.3 109 453-561 264-383 (581)
131 PF11559 ADIP: Afadin- and alp 93.2 5.8 0.00013 37.8 15.7 60 438-504 29-88 (151)
132 KOG0978 E3 ubiquitin ligase in 93.2 14 0.00031 44.4 21.9 146 441-586 401-572 (698)
133 PF05911 DUF869: Plant protein 93.1 5.5 0.00012 48.1 18.8 111 445-555 97-207 (769)
134 PF15070 GOLGA2L5: Putative go 93.1 9.4 0.0002 45.1 20.3 94 443-547 83-176 (617)
135 COG5185 HEC1 Protein involved 93.0 18 0.00038 42.2 21.5 42 685-726 488-529 (622)
136 KOG0243 Kinesin-like protein [ 93.0 1.6 3.6E-05 53.7 14.4 99 489-587 404-511 (1041)
137 PRK01156 chromosome segregatio 92.8 26 0.00057 41.9 23.6 18 440-457 483-500 (895)
138 PF04012 PspA_IM30: PspA/IM30 92.6 12 0.00026 37.4 19.8 34 443-476 26-59 (221)
139 PF12325 TMF_TATA_bd: TATA ele 92.5 4.5 9.7E-05 38.7 13.8 48 486-533 13-60 (120)
140 PRK09841 cryptic autophosphory 92.4 3.5 7.5E-05 48.5 15.8 40 480-519 258-297 (726)
141 PF08826 DMPK_coil: DMPK coile 92.4 0.84 1.8E-05 39.3 8.0 53 500-552 5-60 (61)
142 PF13851 GAS: Growth-arrest sp 92.4 14 0.00031 37.6 21.2 86 454-550 34-119 (201)
143 PF06160 EzrA: Septation ring 92.4 8.3 0.00018 44.4 18.3 60 516-575 371-430 (560)
144 KOG4643 Uncharacterized coiled 92.4 8.8 0.00019 47.7 19.0 85 520-609 260-344 (1195)
145 PF09731 Mitofilin: Mitochondr 92.3 17 0.00037 41.4 20.5 29 440-468 258-287 (582)
146 PF07111 HCR: Alpha helical co 92.1 24 0.00051 42.7 21.7 106 494-605 138-274 (739)
147 PF01576 Myosin_tail_1: Myosin 92.0 0.045 9.7E-07 65.3 0.0 122 472-593 353-474 (859)
148 TIGR00998 8a0101 efflux pump m 92.0 5.9 0.00013 41.1 15.2 24 589-612 188-215 (334)
149 TIGR03794 NHPM_micro_HlyD NHPM 92.0 15 0.00033 40.1 19.0 25 580-604 227-251 (421)
150 PF01576 Myosin_tail_1: Myosin 92.0 0.046 9.9E-07 65.2 0.0 140 492-639 570-709 (859)
151 KOG0288 WD40 repeat protein Ti 91.9 4.7 0.0001 45.8 15.1 99 491-596 8-106 (459)
152 PF11559 ADIP: Afadin- and alp 91.9 12 0.00026 35.7 16.6 59 492-550 55-113 (151)
153 PF10168 Nup88: Nuclear pore c 91.8 9.3 0.0002 45.7 18.4 78 471-548 539-617 (717)
154 PF05546 She9_MDM33: She9 / Md 91.6 20 0.00042 37.7 18.2 72 468-546 9-82 (207)
155 KOG4673 Transcription factor T 91.6 39 0.00085 41.1 26.4 107 438-545 451-565 (961)
156 COG4372 Uncharacterized protei 91.6 28 0.0006 39.9 20.5 24 758-781 354-377 (499)
157 PRK10929 putative mechanosensi 91.6 18 0.00038 45.6 20.9 62 530-591 172-233 (1109)
158 KOG0982 Centrosomal protein Nu 91.5 14 0.0003 42.5 18.3 65 532-596 305-369 (502)
159 TIGR03185 DNA_S_dndD DNA sulfu 91.5 33 0.00072 40.0 25.0 72 492-563 205-287 (650)
160 PF02050 FliJ: Flagellar FliJ 91.5 8.4 0.00018 33.2 15.5 69 484-552 7-80 (123)
161 KOG0946 ER-Golgi vesicle-tethe 91.4 18 0.00038 44.4 19.9 89 459-547 669-760 (970)
162 PF07111 HCR: Alpha helical co 91.4 23 0.00049 42.8 20.5 125 488-612 161-290 (739)
163 PF05700 BCAS2: Breast carcino 91.4 11 0.00024 38.6 16.2 89 474-565 119-209 (221)
164 cd07658 F-BAR_NOSTRIN The F-BA 91.4 19 0.00041 37.3 17.9 131 457-593 58-220 (239)
165 COG0419 SbcC ATPase involved i 91.2 35 0.00076 41.4 22.4 26 471-496 228-253 (908)
166 PF14197 Cep57_CLD_2: Centroso 91.1 1.9 4.1E-05 37.7 9.0 65 535-599 2-66 (69)
167 cd07672 F-BAR_PSTPIP2 The F-BA 90.9 23 0.00049 37.1 18.7 114 467-580 78-196 (240)
168 PRK15422 septal ring assembly 90.9 2 4.4E-05 39.0 9.1 66 543-608 9-74 (79)
169 KOG0804 Cytoplasmic Zn-finger 90.9 11 0.00023 43.5 16.7 28 169-196 43-70 (493)
170 TIGR01005 eps_transp_fam exopo 90.8 19 0.00041 42.3 19.4 12 685-696 526-537 (754)
171 COG1340 Uncharacterized archae 90.7 29 0.00064 38.0 22.2 41 561-601 202-242 (294)
172 PF10473 CENP-F_leu_zip: Leuci 90.7 18 0.0004 35.7 18.2 80 492-571 20-99 (140)
173 PF02050 FliJ: Flagellar FliJ 90.7 10 0.00022 32.7 15.3 47 489-535 45-91 (123)
174 COG4942 Membrane-bound metallo 90.7 36 0.00078 39.0 24.6 35 442-476 89-124 (420)
175 KOG0249 LAR-interacting protei 90.5 5.1 0.00011 48.2 14.4 44 652-700 344-387 (916)
176 PF05384 DegS: Sensor protein 90.5 6.3 0.00014 39.4 13.1 93 513-605 23-116 (159)
177 PRK10884 SH3 domain-containing 90.4 3.5 7.6E-05 42.4 11.6 24 572-595 145-168 (206)
178 PF09744 Jnk-SapK_ap_N: JNK_SA 90.3 11 0.00024 37.7 14.6 111 468-608 3-117 (158)
179 PRK10884 SH3 domain-containing 90.2 3.3 7.1E-05 42.6 11.2 73 494-576 91-163 (206)
180 KOG0249 LAR-interacting protei 90.1 7.7 0.00017 46.8 15.3 84 514-600 174-257 (916)
181 TIGR02977 phageshock_pspA phag 90.1 24 0.00052 36.0 20.5 50 527-576 95-144 (219)
182 TIGR03017 EpsF chain length de 90.0 29 0.00064 37.8 18.8 30 429-460 199-228 (444)
183 PRK10929 putative mechanosensi 89.8 27 0.00058 44.0 20.3 44 561-604 189-232 (1109)
184 PF06160 EzrA: Septation ring 89.8 35 0.00077 39.5 20.1 122 487-608 276-407 (560)
185 PF13870 DUF4201: Domain of un 89.8 21 0.00046 34.9 17.0 124 448-578 7-131 (177)
186 PRK11281 hypothetical protein; 89.6 69 0.0015 40.6 28.8 35 570-604 217-251 (1113)
187 PF04380 BMFP: Membrane fusoge 89.5 2.2 4.7E-05 37.8 8.2 66 481-546 12-79 (79)
188 KOG0239 Kinesin (KAR3 subfamil 89.5 21 0.00046 42.6 18.5 87 522-612 232-318 (670)
189 KOG4643 Uncharacterized coiled 89.5 37 0.0008 42.7 20.5 23 581-603 579-601 (1195)
190 PF06005 DUF904: Protein of un 89.5 5.3 0.00011 35.3 10.4 55 522-576 9-63 (72)
191 PRK10246 exonuclease subunit S 89.4 65 0.0014 40.0 24.8 167 439-606 536-750 (1047)
192 TIGR01005 eps_transp_fam exopo 89.4 44 0.00095 39.4 20.8 10 334-343 142-151 (754)
193 KOG0018 Structural maintenance 89.4 72 0.0016 40.4 24.0 105 495-600 233-337 (1141)
194 cd07649 F-BAR_GAS7 The F-BAR ( 89.3 23 0.00051 36.9 16.6 61 468-528 78-139 (233)
195 PF13166 AAA_13: AAA domain 89.2 49 0.0011 38.3 23.3 42 558-599 430-471 (712)
196 PF14915 CCDC144C: CCDC144C pr 89.1 40 0.00087 37.2 22.3 150 443-596 102-269 (305)
197 PF07106 TBPIP: Tat binding pr 89.1 4.9 0.00011 39.0 11.0 64 490-553 73-138 (169)
198 PF10168 Nup88: Nuclear pore c 88.7 11 0.00023 45.2 15.5 77 428-504 546-622 (717)
199 PRK10698 phage shock protein P 88.7 32 0.0007 35.6 19.5 121 441-578 25-146 (222)
200 PF09728 Taxilin: Myosin-like 88.7 29 0.00062 37.7 17.3 161 438-608 20-181 (309)
201 KOG0964 Structural maintenance 88.6 78 0.0017 40.0 22.3 168 440-608 272-502 (1200)
202 TIGR03017 EpsF chain length de 88.6 41 0.00089 36.7 24.3 35 487-521 169-203 (444)
203 PF09728 Taxilin: Myosin-like 88.5 41 0.00089 36.6 22.2 55 684-738 244-298 (309)
204 COG4477 EzrA Negative regulato 88.4 15 0.00032 43.2 15.7 112 458-569 313-427 (570)
205 cd07680 F-BAR_PACSIN1 The F-BA 88.3 39 0.00085 36.1 18.5 96 492-593 115-217 (258)
206 KOG1853 LIS1-interacting prote 88.3 44 0.00095 36.6 25.9 18 581-598 158-175 (333)
207 KOG0804 Cytoplasmic Zn-finger 88.2 23 0.00049 41.0 16.7 73 481-555 341-413 (493)
208 PRK10476 multidrug resistance 88.0 18 0.0004 38.3 15.2 18 589-606 185-202 (346)
209 KOG0963 Transcription factor/C 88.0 68 0.0015 38.5 27.6 214 466-731 123-343 (629)
210 PF09304 Cortex-I_coil: Cortex 87.9 19 0.00042 34.5 13.6 88 437-527 13-101 (107)
211 PF09738 DUF2051: Double stran 87.9 32 0.00069 37.6 17.1 70 490-566 78-147 (302)
212 KOG0994 Extracellular matrix g 87.8 44 0.00096 42.7 19.8 48 681-735 1704-1751(1758)
213 TIGR03794 NHPM_micro_HlyD NHPM 87.8 24 0.00053 38.6 16.4 21 587-607 227-247 (421)
214 PF10234 Cluap1: Clusterin-ass 87.6 22 0.00048 38.4 15.5 74 532-605 170-247 (267)
215 PF07200 Mod_r: Modifier of ru 87.6 25 0.00054 33.4 14.3 82 468-550 34-115 (150)
216 PF05483 SCP-1: Synaptonemal c 87.4 79 0.0017 38.5 21.2 65 540-604 589-653 (786)
217 TIGR02971 heterocyst_DevB ABC 87.2 41 0.00089 35.1 17.6 22 584-605 183-204 (327)
218 cd07653 F-BAR_CIP4-like The F- 87.1 37 0.0008 34.5 18.3 14 452-465 27-40 (251)
219 PF11932 DUF3450: Protein of u 87.1 18 0.00038 37.4 14.1 67 522-588 40-106 (251)
220 COG3074 Uncharacterized protei 87.0 6.3 0.00014 35.6 9.3 64 543-606 9-72 (79)
221 TIGR00998 8a0101 efflux pump m 86.8 40 0.00086 35.1 16.6 15 440-454 80-94 (334)
222 TIGR00634 recN DNA repair prot 86.8 66 0.0014 37.1 21.0 60 541-604 304-363 (563)
223 KOG4593 Mitotic checkpoint pro 86.7 85 0.0018 38.2 22.5 113 453-565 79-199 (716)
224 PRK03598 putative efflux pump 86.7 9.6 0.00021 40.0 12.2 22 516-537 144-165 (331)
225 PF10146 zf-C4H2: Zinc finger- 86.6 19 0.00042 37.8 14.2 63 533-602 34-96 (230)
226 KOG0978 E3 ubiquitin ligase in 86.6 41 0.00089 40.7 18.3 48 457-504 485-532 (698)
227 PF12795 MscS_porin: Mechanose 86.5 42 0.00091 34.5 17.8 67 527-593 146-212 (240)
228 KOG4438 Centromere-associated 86.0 74 0.0016 36.8 21.4 98 514-611 198-300 (446)
229 KOG2264 Exostosin EXT1L [Signa 85.9 4.6 9.9E-05 47.7 10.0 80 455-534 73-152 (907)
230 cd07622 BAR_SNX4 The Bin/Amphi 85.9 44 0.00096 34.2 21.3 149 436-597 10-168 (201)
231 PF09787 Golgin_A5: Golgin sub 85.8 73 0.0016 36.6 23.5 89 689-786 360-466 (511)
232 cd07675 F-BAR_FNBP1L The F-BAR 85.7 33 0.00071 36.6 15.4 120 472-597 92-218 (252)
233 PRK10722 hypothetical protein; 85.6 2.1 4.5E-05 45.6 6.7 51 691-741 155-205 (247)
234 cd07656 F-BAR_srGAP The F-BAR 85.5 50 0.0011 34.7 16.5 73 468-540 77-161 (241)
235 PF15619 Lebercilin: Ciliary p 85.4 47 0.001 34.1 20.6 89 463-551 21-109 (194)
236 PF14362 DUF4407: Domain of un 85.4 52 0.0011 34.6 18.7 32 563-594 222-253 (301)
237 PF05010 TACC: Transforming ac 85.4 51 0.0011 34.4 21.8 105 474-578 29-137 (207)
238 PF15035 Rootletin: Ciliary ro 85.1 28 0.00062 35.3 14.1 55 516-573 126-180 (182)
239 TIGR02473 flagell_FliJ flagell 85.1 31 0.00067 31.7 15.0 47 458-504 3-49 (141)
240 PRK11519 tyrosine kinase; Prov 85.1 36 0.00079 40.3 17.0 13 685-697 506-518 (719)
241 PF10473 CENP-F_leu_zip: Leuci 84.9 43 0.00092 33.2 18.0 13 587-599 126-138 (140)
242 PF11180 DUF2968: Protein of u 84.9 33 0.00071 35.8 14.5 40 565-604 146-185 (192)
243 PF07926 TPR_MLP1_2: TPR/MLP1/ 84.9 36 0.00079 32.3 18.3 37 459-495 8-44 (132)
244 PF13942 Lipoprotein_20: YfhG 84.7 3.2 6.8E-05 42.5 7.2 50 691-740 109-158 (179)
245 PF07106 TBPIP: Tat binding pr 84.6 3.4 7.3E-05 40.1 7.1 26 584-609 113-138 (169)
246 PRK15178 Vi polysaccharide exp 84.5 58 0.0013 37.4 17.6 142 464-605 215-369 (434)
247 PF15294 Leu_zip: Leucine zipp 84.4 47 0.001 36.2 16.1 149 442-604 127-277 (278)
248 KOG1029 Endocytic adaptor prot 84.4 55 0.0012 40.4 17.9 32 343-374 261-295 (1118)
249 KOG0971 Microtubule-associated 84.3 1.3E+02 0.0027 38.1 32.6 29 522-550 316-344 (1243)
250 PF07798 DUF1640: Protein of u 84.3 46 0.001 33.0 16.9 7 536-542 85-91 (177)
251 COG1566 EmrA Multidrug resista 84.2 19 0.0004 40.0 13.3 115 491-612 100-219 (352)
252 cd07666 BAR_SNX7 The Bin/Amphi 84.2 62 0.0014 34.4 22.1 121 430-550 43-196 (243)
253 COG1842 PspA Phage shock prote 84.2 50 0.0011 34.7 15.8 94 515-608 36-134 (225)
254 PRK10869 recombination and rep 84.1 91 0.002 36.3 21.0 39 540-578 298-336 (553)
255 COG2433 Uncharacterized conser 84.0 28 0.00061 41.5 15.2 37 539-582 475-511 (652)
256 PF09789 DUF2353: Uncharacteri 83.9 76 0.0017 35.2 18.5 80 527-607 123-209 (319)
257 TIGR02231 conserved hypothetic 83.9 8.4 0.00018 43.5 10.9 49 560-608 125-173 (525)
258 TIGR02231 conserved hypothetic 83.6 14 0.00031 41.7 12.5 30 490-519 72-101 (525)
259 TIGR03752 conj_TIGR03752 integ 83.6 7.9 0.00017 44.6 10.5 67 533-599 61-128 (472)
260 KOG0979 Structural maintenance 83.5 87 0.0019 39.5 19.4 147 420-575 186-355 (1072)
261 KOG1962 B-cell receptor-associ 83.5 13 0.00028 39.1 11.1 62 543-604 149-210 (216)
262 KOG4360 Uncharacterized coiled 83.1 19 0.00042 42.2 13.2 140 461-600 76-239 (596)
263 PF06818 Fez1: Fez1; InterPro 82.8 46 0.00099 34.9 14.7 24 489-512 10-33 (202)
264 PF06005 DUF904: Protein of un 82.6 13 0.00029 32.9 9.3 56 480-535 9-64 (72)
265 PF08647 BRE1: BRE1 E3 ubiquit 82.6 16 0.00034 33.3 10.1 72 437-512 21-92 (96)
266 PF09755 DUF2046: Uncharacteri 82.5 87 0.0019 34.8 25.3 67 540-606 137-204 (310)
267 PF05911 DUF869: Plant protein 82.3 1.3E+02 0.0029 36.9 31.5 266 439-736 23-310 (769)
268 PF08647 BRE1: BRE1 E3 ubiquit 82.2 12 0.00026 34.1 9.2 63 517-593 3-65 (96)
269 PF12325 TMF_TATA_bd: TATA ele 81.9 40 0.00087 32.5 13.0 95 440-545 16-110 (120)
270 PF06008 Laminin_I: Laminin Do 81.9 69 0.0015 33.3 24.7 64 684-747 178-242 (264)
271 cd09234 V_HD-PTP_like Protein- 81.9 82 0.0018 34.2 20.4 226 439-739 71-299 (337)
272 TIGR02894 DNA_bind_RsfA transc 81.8 11 0.00023 38.3 9.4 70 457-537 86-155 (161)
273 PF10481 CENP-F_N: Cenp-F N-te 81.8 56 0.0012 36.0 15.3 26 711-736 277-302 (307)
274 KOG0018 Structural maintenance 81.4 1.5E+02 0.0033 37.7 20.4 159 436-594 230-458 (1141)
275 PF12777 MT: Microtubule-bindi 81.1 7.5 0.00016 42.0 8.8 49 528-576 232-280 (344)
276 COG1340 Uncharacterized archae 81.1 94 0.002 34.3 24.0 88 517-604 165-252 (294)
277 cd07657 F-BAR_Fes_Fer The F-BA 81.1 76 0.0016 33.2 18.6 49 490-538 106-154 (237)
278 PF10146 zf-C4H2: Zinc finger- 81.0 57 0.0012 34.4 14.8 31 489-519 32-62 (230)
279 KOG0962 DNA repair protein RAD 80.8 1.9E+02 0.0041 37.6 22.1 84 435-518 845-928 (1294)
280 PF09787 Golgin_A5: Golgin sub 80.6 1.2E+02 0.0025 35.0 21.0 78 468-545 224-309 (511)
281 PF03962 Mnd1: Mnd1 family; I 80.4 36 0.00079 34.5 12.8 57 464-520 30-100 (188)
282 KOG0239 Kinesin (KAR3 subfamil 80.3 77 0.0017 38.1 17.3 20 674-697 417-436 (670)
283 KOG4460 Nuclear pore complex, 80.3 57 0.0012 39.0 15.7 164 428-604 569-733 (741)
284 PF14662 CCDC155: Coiled-coil 80.2 81 0.0018 33.0 22.9 32 444-475 40-71 (193)
285 PF13815 Dzip-like_N: Iguana/D 80.1 13 0.00028 34.8 8.9 81 438-518 25-116 (118)
286 PRK10698 phage shock protein P 80.1 79 0.0017 32.8 15.6 46 563-608 103-148 (222)
287 cd07624 BAR_SNX7_30 The Bin/Am 79.9 71 0.0015 32.2 21.6 40 434-473 8-51 (200)
288 PF08606 Prp19: Prp19/Pso4-lik 79.8 11 0.00023 33.8 7.8 51 543-593 20-70 (70)
289 PRK11519 tyrosine kinase; Prov 79.7 1.4E+02 0.003 35.7 19.0 12 214-225 54-65 (719)
290 PF08172 CASP_C: CASP C termin 79.6 12 0.00026 39.6 9.5 41 564-604 84-131 (248)
291 COG2433 Uncharacterized conser 79.5 25 0.00053 42.0 12.7 70 538-615 450-522 (652)
292 cd07676 F-BAR_FBP17 The F-BAR 79.5 89 0.0019 33.1 17.4 134 457-593 63-213 (253)
293 PF10498 IFT57: Intra-flagella 79.4 1.1E+02 0.0024 34.3 17.1 39 512-550 268-306 (359)
294 KOG0244 Kinesin-like protein [ 79.3 56 0.0012 40.7 15.8 97 476-596 318-414 (913)
295 PF03938 OmpH: Outer membrane 79.2 57 0.0012 30.8 13.0 46 477-522 24-69 (158)
296 cd07652 F-BAR_Rgd1 The F-BAR ( 79.1 85 0.0018 32.6 15.9 55 457-511 61-115 (234)
297 PRK15136 multidrug efflux syst 79.0 47 0.001 36.5 14.1 7 606-612 220-226 (390)
298 PF13863 DUF4200: Domain of un 78.8 53 0.0012 30.1 14.9 52 486-537 18-69 (126)
299 PRK03598 putative efflux pump 78.5 53 0.0011 34.7 13.8 28 585-612 183-214 (331)
300 KOG1962 B-cell receptor-associ 77.8 25 0.00054 37.1 11.0 74 492-576 130-203 (216)
301 KOG0946 ER-Golgi vesicle-tethe 77.7 2E+02 0.0043 36.1 21.1 87 490-576 679-775 (970)
302 PF05266 DUF724: Protein of un 77.6 59 0.0013 33.3 13.4 60 534-607 127-186 (190)
303 TIGR02971 heterocyst_DevB ABC 77.2 87 0.0019 32.8 14.8 31 496-526 90-120 (327)
304 PF15066 CAGE1: Cancer-associa 77.2 1.6E+02 0.0035 34.7 22.4 25 321-345 192-217 (527)
305 PF09738 DUF2051: Double stran 77.0 40 0.00086 36.9 12.7 111 441-551 106-239 (302)
306 PF06120 Phage_HK97_TLTM: Tail 77.0 1.2E+02 0.0027 33.4 18.9 120 446-565 40-168 (301)
307 PF15450 DUF4631: Domain of un 76.9 1E+02 0.0022 36.5 16.3 254 445-747 227-500 (531)
308 KOG2129 Uncharacterized conser 76.6 1.6E+02 0.0035 34.4 20.6 65 527-604 161-225 (552)
309 COG5185 HEC1 Protein involved 76.4 1.2E+02 0.0027 35.8 16.7 51 471-521 298-355 (622)
310 KOG4403 Cell surface glycoprot 76.3 35 0.00076 39.6 12.3 25 539-563 303-327 (575)
311 TIGR01069 mutS2 MutS2 family p 76.2 66 0.0014 39.0 15.3 25 32-57 121-145 (771)
312 KOG4460 Nuclear pore complex, 76.0 1.9E+02 0.004 35.0 18.7 127 468-597 559-686 (741)
313 PF10267 Tmemb_cc2: Predicted 75.9 84 0.0018 35.8 15.1 102 479-600 216-318 (395)
314 PF05262 Borrelia_P83: Borreli 75.8 1.7E+02 0.0037 34.3 18.1 18 207-224 12-29 (489)
315 PF05483 SCP-1: Synaptonemal c 75.6 2.1E+02 0.0045 35.2 21.4 125 473-604 497-625 (786)
316 PF10205 KLRAQ: Predicted coil 75.4 38 0.00082 32.3 10.5 74 525-605 6-79 (102)
317 PF11180 DUF2968: Protein of u 75.2 38 0.00083 35.3 11.3 75 473-547 110-184 (192)
318 COG3096 MukB Uncharacterized p 74.8 2.3E+02 0.005 35.5 22.4 113 475-597 980-1104(1480)
319 PRK09973 putative outer membra 74.6 10 0.00022 35.0 6.4 45 490-534 25-69 (85)
320 COG4026 Uncharacterized protei 74.5 25 0.00053 37.9 10.0 39 512-550 151-189 (290)
321 PF05615 THOC7: Tho complex su 74.4 68 0.0015 30.4 12.1 94 428-522 23-120 (139)
322 cd07667 BAR_SNX30 The Bin/Amph 74.4 1.3E+02 0.0028 32.3 22.1 31 435-465 46-76 (240)
323 PF04871 Uso1_p115_C: Uso1 / p 74.3 89 0.0019 30.4 13.4 55 462-516 6-61 (136)
324 KOG0240 Kinesin (SMY1 subfamil 74.2 2E+02 0.0044 34.5 18.3 84 468-551 414-497 (607)
325 TIGR00634 recN DNA repair prot 74.0 97 0.0021 35.8 15.4 50 482-531 266-315 (563)
326 PRK12704 phosphodiesterase; Pr 73.9 1.8E+02 0.004 33.9 19.0 6 635-640 246-251 (520)
327 PRK00409 recombination and DNA 73.8 94 0.002 37.8 15.8 21 34-55 128-148 (782)
328 PF08172 CASP_C: CASP C termin 73.7 20 0.00042 38.1 9.2 33 472-504 3-35 (248)
329 KOG0963 Transcription factor/C 73.7 2.2E+02 0.0047 34.6 23.2 121 473-593 187-337 (629)
330 KOG2077 JNK/SAPK-associated pr 73.4 70 0.0015 38.4 14.0 75 469-550 302-376 (832)
331 PF04871 Uso1_p115_C: Uso1 / p 73.4 94 0.002 30.3 13.9 35 576-612 80-114 (136)
332 KOG2072 Translation initiation 73.3 2.5E+02 0.0055 35.2 19.1 58 443-501 526-583 (988)
333 PF08826 DMPK_coil: DMPK coile 73.1 27 0.00058 30.4 8.2 33 570-602 29-61 (61)
334 COG3074 Uncharacterized protei 72.8 22 0.00048 32.3 7.9 54 441-494 19-72 (79)
335 PF13870 DUF4201: Domain of un 72.8 1E+02 0.0022 30.3 22.2 126 471-603 45-175 (177)
336 PF14992 TMCO5: TMCO5 family 72.6 53 0.0011 36.0 12.1 105 444-552 22-137 (280)
337 TIGR02449 conserved hypothetic 72.3 28 0.00061 30.7 8.3 57 535-605 4-60 (65)
338 PRK05689 fliJ flagellar biosyn 72.3 89 0.0019 29.5 14.1 47 458-504 6-52 (147)
339 TIGR03752 conj_TIGR03752 integ 71.9 29 0.00062 40.3 10.5 24 574-597 117-140 (472)
340 cd07647 F-BAR_PSTPIP The F-BAR 71.6 1.3E+02 0.0028 31.1 14.5 85 444-530 103-187 (239)
341 PRK07720 fliJ flagellar biosyn 71.5 95 0.002 29.5 15.3 101 495-602 22-128 (146)
342 TIGR00618 sbcc exonuclease Sbc 71.4 2.7E+02 0.0058 34.7 22.2 11 227-237 28-38 (1042)
343 PRK02119 hypothetical protein; 71.4 33 0.00072 30.3 8.6 24 586-609 36-59 (73)
344 KOG4005 Transcription factor X 71.3 31 0.00068 37.3 9.9 87 498-602 61-147 (292)
345 TIGR02473 flagell_FliJ flagell 71.2 85 0.0018 28.8 18.1 33 497-529 69-101 (141)
346 TIGR02449 conserved hypothetic 71.0 31 0.00068 30.4 8.3 25 520-544 10-34 (65)
347 PF06248 Zw10: Centromere/kine 70.8 94 0.002 36.0 14.4 48 490-540 15-62 (593)
348 cd07648 F-BAR_FCHO The F-BAR ( 70.8 1.4E+02 0.0029 31.0 20.4 29 458-486 57-85 (261)
349 KOG3564 GTPase-activating prot 70.6 44 0.00095 39.3 11.5 83 516-605 27-109 (604)
350 KOG0992 Uncharacterized conser 70.5 1.6E+02 0.0036 35.0 15.9 26 470-495 233-258 (613)
351 KOG3647 Predicted coiled-coil 70.2 1.1E+02 0.0023 34.0 13.7 67 535-601 116-182 (338)
352 PRK15422 septal ring assembly 69.9 30 0.00065 31.8 8.1 59 440-498 18-76 (79)
353 KOG4302 Microtubule-associated 69.9 66 0.0014 38.8 13.1 61 448-508 55-143 (660)
354 PF04728 LPP: Lipoprotein leuc 69.7 34 0.00074 29.6 8.0 47 483-536 4-50 (56)
355 PF14073 Cep57_CLD: Centrosome 69.3 1.5E+02 0.0032 30.8 16.7 78 513-597 81-172 (178)
356 cd07664 BAR_SNX2 The Bin/Amphi 69.2 1.6E+02 0.0034 31.1 22.9 117 476-596 74-200 (234)
357 TIGR01069 mutS2 MutS2 family p 69.0 1.3E+02 0.0027 36.7 15.4 51 463-513 499-549 (771)
358 cd09238 V_Alix_like_1 Protein- 68.9 1E+02 0.0022 33.7 13.4 82 439-520 71-158 (339)
359 PF10267 Tmemb_cc2: Predicted 68.8 2.2E+02 0.0047 32.6 20.7 106 435-550 207-317 (395)
360 KOG0247 Kinesin-like protein [ 68.7 1.2E+02 0.0027 37.3 14.9 63 476-550 535-597 (809)
361 cd07672 F-BAR_PSTPIP2 The F-BA 68.7 54 0.0012 34.4 11.0 89 441-531 101-189 (240)
362 KOG1850 Myosin-like coiled-coi 68.6 2.1E+02 0.0046 32.5 22.8 166 439-612 150-331 (391)
363 PF05335 DUF745: Protein of un 68.6 1.5E+02 0.0033 30.7 16.1 81 490-570 61-141 (188)
364 PRK15396 murein lipoprotein; P 68.5 25 0.00055 31.8 7.4 46 490-535 26-71 (78)
365 PF14931 IFT20: Intraflagellar 68.5 1.2E+02 0.0025 29.4 14.6 81 494-584 32-112 (120)
366 TIGR01010 BexC_CtrB_KpsE polys 68.4 1.8E+02 0.0039 31.4 19.3 77 511-593 215-298 (362)
367 PF03962 Mnd1: Mnd1 family; I 68.2 1.4E+02 0.0031 30.4 13.5 45 490-534 63-107 (188)
368 TIGR02338 gimC_beta prefoldin, 68.2 1E+02 0.0022 28.5 12.0 38 569-606 70-107 (110)
369 PF06785 UPF0242: Uncharacteri 68.0 2.2E+02 0.0049 32.4 18.7 100 444-543 72-174 (401)
370 cd07655 F-BAR_PACSIN The F-BAR 67.9 1.4E+02 0.003 31.4 13.7 104 442-548 114-217 (258)
371 PF12777 MT: Microtubule-bindi 67.7 34 0.00073 37.1 9.6 101 470-578 196-303 (344)
372 PF04100 Vps53_N: Vps53-like, 67.4 2.1E+02 0.0046 32.0 18.7 137 442-604 27-174 (383)
373 cd00179 SynN Syntaxin N-termin 67.1 1.1E+02 0.0024 28.5 13.9 16 515-530 93-108 (151)
374 cd07598 BAR_FAM92 The Bin/Amph 67.1 1.6E+02 0.0036 30.5 20.8 50 439-488 10-67 (211)
375 PF04728 LPP: Lipoprotein leuc 67.0 29 0.00064 30.0 7.1 35 469-503 4-38 (56)
376 PRK00409 recombination and DNA 66.8 1.6E+02 0.0035 35.9 15.7 9 155-163 201-209 (782)
377 PF10805 DUF2730: Protein of u 66.0 74 0.0016 29.6 10.1 65 486-550 32-98 (106)
378 COG3883 Uncharacterized protei 65.7 2.1E+02 0.0046 31.3 22.5 71 442-512 33-103 (265)
379 PRK07720 fliJ flagellar biosyn 65.6 1.3E+02 0.0027 28.7 18.7 40 496-535 71-110 (146)
380 TIGR03185 DNA_S_dndD DNA sulfu 65.1 2.9E+02 0.0062 32.6 30.0 55 439-493 208-262 (650)
381 PRK09841 cryptic autophosphory 65.1 3.1E+02 0.0066 32.9 19.1 13 685-697 511-523 (726)
382 cd09236 V_AnPalA_UmRIM20_like 65.0 1.9E+02 0.0041 31.7 14.6 146 438-592 69-221 (353)
383 TIGR03545 conserved hypothetic 64.7 45 0.00098 39.1 10.4 15 490-504 165-179 (555)
384 KOG1103 Predicted coiled-coil 64.3 2.7E+02 0.0059 32.1 18.0 43 442-484 109-155 (561)
385 PF04102 SlyX: SlyX; InterPro 64.2 30 0.00066 29.9 6.8 22 586-607 31-52 (69)
386 PF02841 GBP_C: Guanylate-bind 64.2 1.8E+02 0.0039 31.0 13.9 13 475-487 155-167 (297)
387 KOG0288 WD40 repeat protein Ti 64.1 2.9E+02 0.0063 32.3 16.8 19 656-674 177-195 (459)
388 PF12329 TMF_DNA_bd: TATA elem 64.0 56 0.0012 28.9 8.5 59 539-604 13-71 (74)
389 PF06120 Phage_HK97_TLTM: Tail 63.6 2.4E+02 0.0052 31.2 16.5 66 459-526 39-104 (301)
390 PRK09343 prefoldin subunit bet 63.2 1.3E+02 0.0028 28.6 11.3 94 513-610 3-115 (121)
391 KOG2129 Uncharacterized conser 62.4 3.2E+02 0.0068 32.2 17.8 62 543-604 134-196 (552)
392 PF03961 DUF342: Protein of un 61.8 44 0.00096 37.4 9.4 35 572-606 374-408 (451)
393 PRK15136 multidrug efflux syst 61.8 2.3E+02 0.005 31.3 14.6 12 458-469 96-107 (390)
394 KOG1003 Actin filament-coating 61.7 2.2E+02 0.0048 30.2 19.9 80 525-604 96-196 (205)
395 PF07200 Mod_r: Modifier of ru 61.6 1.5E+02 0.0033 28.2 14.2 70 527-597 37-106 (150)
396 PF05103 DivIVA: DivIVA protei 61.6 5.7 0.00012 36.3 2.1 30 475-504 39-68 (131)
397 PRK01156 chromosome segregatio 61.6 3.6E+02 0.0079 32.6 33.1 12 227-238 25-36 (895)
398 PF08657 DASH_Spc34: DASH comp 61.6 45 0.00097 35.8 8.9 41 477-517 175-215 (259)
399 PF10475 DUF2450: Protein of u 61.2 2.3E+02 0.0049 30.2 15.6 89 516-611 52-142 (291)
400 COG3883 Uncharacterized protei 61.2 2.5E+02 0.0055 30.7 16.3 21 592-612 96-116 (265)
401 PRK10361 DNA recombination pro 61.1 3.3E+02 0.0071 32.0 23.0 21 584-604 176-196 (475)
402 PRK14148 heat shock protein Gr 61.1 66 0.0014 33.3 9.7 99 490-612 41-139 (195)
403 PF15254 CCDC14: Coiled-coil d 60.9 3.1E+02 0.0066 34.3 16.2 104 445-551 439-542 (861)
404 PF07798 DUF1640: Protein of u 60.7 1.8E+02 0.004 28.9 18.3 41 488-528 57-98 (177)
405 COG4985 ABC-type phosphate tra 60.4 63 0.0014 35.1 9.6 25 579-603 220-244 (289)
406 PF04899 MbeD_MobD: MbeD/MobD 60.4 84 0.0018 28.0 8.9 61 442-502 9-69 (70)
407 PF14992 TMCO5: TMCO5 family 60.2 1.3E+02 0.0029 33.0 12.2 157 446-608 10-181 (280)
408 PF05700 BCAS2: Breast carcino 59.9 1.2E+02 0.0026 31.2 11.4 44 517-560 175-218 (221)
409 KOG4005 Transcription factor X 59.9 86 0.0019 34.2 10.5 62 437-505 87-148 (292)
410 PF05010 TACC: Transforming ac 59.8 2.3E+02 0.005 29.8 20.9 115 472-592 87-201 (207)
411 KOG1899 LAR transmembrane tyro 59.6 2.5E+02 0.0054 34.4 15.0 26 471-496 121-146 (861)
412 PF00015 MCPsignal: Methyl-acc 59.6 1.7E+02 0.0036 28.1 11.9 110 442-551 102-211 (213)
413 PRK02793 phi X174 lysis protei 59.5 87 0.0019 27.6 8.9 24 586-609 35-58 (72)
414 TIGR01730 RND_mfp RND family e 59.4 77 0.0017 32.3 9.9 21 516-536 101-121 (322)
415 PF05529 Bap31: B-cell recepto 59.2 63 0.0014 32.0 9.0 16 492-507 157-172 (192)
416 cd07674 F-BAR_FCHO1 The F-BAR 59.1 2.4E+02 0.0051 29.7 17.6 27 459-485 58-84 (261)
417 PRK14154 heat shock protein Gr 59.0 2E+02 0.0044 30.3 12.9 99 491-612 54-152 (208)
418 COG2960 Uncharacterized protei 58.9 35 0.00076 32.6 6.7 56 493-548 33-90 (103)
419 PF14988 DUF4515: Domain of un 58.8 2.3E+02 0.005 29.4 22.7 83 465-547 37-123 (206)
420 PF13863 DUF4200: Domain of un 58.7 1.5E+02 0.0032 27.2 15.0 74 490-563 29-106 (126)
421 PF09304 Cortex-I_coil: Cortex 58.6 1.8E+02 0.0039 28.2 13.8 65 539-603 38-102 (107)
422 PF05103 DivIVA: DivIVA protei 58.6 11 0.00025 34.4 3.5 23 581-603 108-130 (131)
423 PF10498 IFT57: Intra-flagella 58.4 3.1E+02 0.0068 30.8 16.3 94 445-548 218-311 (359)
424 cd07654 F-BAR_FCHSD The F-BAR 58.3 2.6E+02 0.0057 30.0 16.9 118 470-592 79-226 (264)
425 KOG1144 Translation initiation 58.2 89 0.0019 38.8 11.4 79 527-612 227-307 (1064)
426 PF05529 Bap31: B-cell recepto 58.0 65 0.0014 32.0 8.9 33 563-595 158-190 (192)
427 PF09727 CortBP2: Cortactin-bi 58.0 2.5E+02 0.0053 29.5 15.2 80 484-563 79-166 (192)
428 KOG4360 Uncharacterized coiled 58.0 2.7E+02 0.0059 33.3 14.7 104 489-593 159-281 (596)
429 cd08915 V_Alix_like Protein-in 57.9 2.7E+02 0.0059 30.0 15.5 145 438-592 68-219 (342)
430 PRK10869 recombination and rep 57.8 2.8E+02 0.0061 32.4 15.1 12 227-238 24-35 (553)
431 PF09744 Jnk-SapK_ap_N: JNK_SA 57.8 2.2E+02 0.0047 28.8 17.5 74 468-548 36-113 (158)
432 KOG4661 Hsp27-ERE-TATA-binding 57.5 1E+02 0.0022 37.2 11.4 42 563-604 667-708 (940)
433 PRK14140 heat shock protein Gr 57.2 62 0.0014 33.4 8.8 99 490-612 38-136 (191)
434 cd07679 F-BAR_PACSIN2 The F-BA 57.0 2.9E+02 0.0063 30.1 20.2 97 492-594 115-218 (258)
435 PF08581 Tup_N: Tup N-terminal 56.8 1.4E+02 0.0031 27.1 9.9 62 512-576 6-74 (79)
436 PRK09793 methyl-accepting prot 56.3 3.5E+02 0.0076 30.8 16.9 69 438-506 241-313 (533)
437 PRK14141 heat shock protein Gr 56.2 1.3E+02 0.0027 31.7 10.9 101 493-612 35-136 (209)
438 PRK13428 F0F1 ATP synthase sub 56.2 2.4E+02 0.0053 32.1 13.9 15 769-783 387-401 (445)
439 PRK14155 heat shock protein Gr 56.0 1.5E+02 0.0033 31.0 11.4 100 492-612 16-115 (208)
440 KOG0993 Rab5 GTPase effector R 55.9 2.8E+02 0.006 32.6 14.1 91 480-570 22-132 (542)
441 COG4487 Uncharacterized protei 55.8 3.9E+02 0.0086 31.2 20.9 140 444-593 27-181 (438)
442 PLN03229 acetyl-coenzyme A car 55.3 3.1E+02 0.0067 34.0 15.1 58 454-511 485-550 (762)
443 KOG1937 Uncharacterized conser 55.2 4.2E+02 0.0092 31.4 19.7 158 439-604 254-427 (521)
444 cd07627 BAR_Vps5p The Bin/Amph 55.1 2.5E+02 0.0054 28.7 22.1 150 439-598 17-186 (216)
445 COG4487 Uncharacterized protei 54.7 3.9E+02 0.0085 31.3 15.2 93 484-585 52-148 (438)
446 COG1566 EmrA Multidrug resista 54.5 1.9E+02 0.0042 32.4 12.6 52 557-608 149-204 (352)
447 PF10212 TTKRSYEDQ: Predicted 54.5 2.8E+02 0.006 33.0 14.2 68 265-356 225-292 (518)
448 KOG4637 Adaptor for phosphoino 54.4 3.7E+02 0.008 31.3 14.6 126 386-548 44-186 (464)
449 PF12808 Mto2_bdg: Micro-tubul 54.1 30 0.00064 29.5 4.9 47 686-732 3-49 (52)
450 cd07686 F-BAR_Fer The F-BAR (F 53.6 3.1E+02 0.0066 29.3 18.7 122 470-593 74-208 (234)
451 PF02403 Seryl_tRNA_N: Seryl-t 53.5 1.2E+02 0.0025 27.4 9.0 16 530-545 73-88 (108)
452 PRK00295 hypothetical protein; 52.9 1.3E+02 0.0027 26.4 8.7 23 586-608 32-54 (68)
453 KOG3647 Predicted coiled-coil 52.5 3.8E+02 0.0082 30.0 14.5 68 514-581 109-176 (338)
454 PF14389 Lzipper-MIP1: Leucine 52.4 57 0.0012 29.6 6.8 61 490-550 9-73 (88)
455 TIGR01541 tape_meas_lam_C phag 52.4 3.3E+02 0.0072 30.2 13.8 13 441-453 2-14 (332)
456 PRK14143 heat shock protein Gr 52.3 75 0.0016 33.8 8.7 48 492-539 70-117 (238)
457 PF09731 Mitofilin: Mitochondr 52.3 4.2E+02 0.0092 30.5 20.5 35 706-740 538-573 (582)
458 PF05837 CENP-H: Centromere pr 52.2 1.4E+02 0.003 27.9 9.4 63 513-576 13-75 (106)
459 PF06008 Laminin_I: Laminin Do 51.6 3.1E+02 0.0066 28.7 19.5 20 711-730 226-245 (264)
460 PRK10780 periplasmic chaperone 51.4 2.5E+02 0.0054 27.6 12.8 43 478-520 32-74 (165)
461 PHA02816 hypothetical protein; 51.3 10 0.00023 35.1 2.0 29 34-62 37-65 (106)
462 PF06785 UPF0242: Uncharacteri 51.3 4.3E+02 0.0094 30.3 15.2 60 489-548 99-158 (401)
463 KOG4403 Cell surface glycoprot 51.1 2.8E+02 0.0061 32.7 13.3 27 459-485 264-290 (575)
464 smart00503 SynN Syntaxin N-ter 50.9 1.8E+02 0.0039 25.8 11.6 97 439-535 14-114 (117)
465 PF05262 Borrelia_P83: Borreli 50.5 4.9E+02 0.011 30.7 16.4 14 655-668 394-407 (489)
466 PF02183 HALZ: Homeobox associ 50.3 50 0.0011 27.1 5.5 39 558-603 4-42 (45)
467 PRK04406 hypothetical protein; 50.2 1.7E+02 0.0037 26.2 9.3 24 586-609 38-61 (75)
468 PRK13729 conjugal transfer pil 50.1 94 0.002 36.3 9.6 33 572-604 89-121 (475)
469 PRK00736 hypothetical protein; 50.1 1.6E+02 0.0035 25.8 8.9 24 586-609 32-55 (68)
470 KOG1937 Uncharacterized conser 50.1 5.1E+02 0.011 30.8 18.2 38 498-535 295-332 (521)
471 PRK14900 valS valyl-tRNA synth 49.8 83 0.0018 39.5 9.8 64 489-552 842-905 (1052)
472 PF10046 BLOC1_2: Biogenesis o 49.8 2.1E+02 0.0046 26.3 12.4 45 460-504 13-57 (99)
473 COG3599 DivIVA Cell division i 49.6 3.4E+02 0.0074 28.6 14.0 58 519-576 83-140 (212)
474 PF06632 XRCC4: DNA double-str 49.5 3.9E+02 0.0084 30.0 13.9 39 517-555 151-189 (342)
475 PRK11578 macrolide transporter 49.4 1.3E+02 0.0027 32.5 10.0 7 606-612 188-194 (370)
476 PF05276 SH3BP5: SH3 domain-bi 49.4 3.6E+02 0.0079 28.9 17.4 76 467-548 69-145 (239)
477 PF05929 Phage_GPO: Phage caps 49.3 68 0.0015 34.9 8.0 62 438-499 190-252 (276)
478 PF02994 Transposase_22: L1 tr 48.9 41 0.0009 37.2 6.5 13 443-455 43-55 (370)
479 PRK14160 heat shock protein Gr 48.7 1.1E+02 0.0023 32.3 9.0 95 491-612 63-157 (211)
480 KOG1574 Predicted cell growth/ 48.6 1.6E+02 0.0034 33.7 10.8 119 430-555 196-319 (375)
481 PF05266 DUF724: Protein of un 48.6 3.3E+02 0.0071 28.1 13.4 60 441-504 87-146 (190)
482 PF12808 Mto2_bdg: Micro-tubul 48.4 35 0.00076 29.1 4.5 39 514-552 12-50 (52)
483 PF05384 DegS: Sensor protein 48.4 3.1E+02 0.0067 27.8 19.9 110 467-576 19-129 (159)
484 TIGR02894 DNA_bind_RsfA transc 48.4 1E+02 0.0022 31.6 8.5 50 527-576 93-142 (161)
485 PF13747 DUF4164: Domain of un 48.3 81 0.0018 28.8 7.2 42 693-734 41-82 (89)
486 PF05278 PEARLI-4: Arabidopsis 48.2 4.1E+02 0.009 29.2 15.1 49 502-550 199-247 (269)
487 PF05278 PEARLI-4: Arabidopsis 48.2 4.1E+02 0.009 29.2 15.2 58 494-551 198-255 (269)
488 PRK05689 fliJ flagellar biosyn 48.0 2.5E+02 0.0054 26.6 18.2 94 444-537 6-112 (147)
489 PRK11448 hsdR type I restricti 48.0 1.2E+02 0.0025 38.7 10.7 66 491-556 144-209 (1123)
490 PF12329 TMF_DNA_bd: TATA elem 47.9 2E+02 0.0043 25.5 9.4 62 460-521 4-65 (74)
491 PF09602 PhaP_Bmeg: Polyhydrox 47.7 3.4E+02 0.0073 28.1 19.4 136 441-604 23-160 (165)
492 TIGR00618 sbcc exonuclease Sbc 47.3 6.7E+02 0.014 31.4 32.8 29 516-544 385-413 (1042)
493 KOG2264 Exostosin EXT1L [Signa 46.9 1E+02 0.0023 37.1 9.4 54 525-578 94-147 (907)
494 PRK04325 hypothetical protein; 46.8 1.7E+02 0.0037 26.0 8.7 23 586-608 36-58 (74)
495 PRK14162 heat shock protein Gr 46.5 1.1E+02 0.0023 31.9 8.5 98 491-612 41-138 (194)
496 PF06148 COG2: COG (conserved 46.2 20 0.00042 33.7 3.1 88 485-585 22-109 (133)
497 PRK14147 heat shock protein Gr 46.2 2.7E+02 0.0058 28.3 11.1 99 486-603 15-113 (172)
498 KOG3771 Amphiphysin [Intracell 46.2 3E+02 0.0065 32.3 12.7 147 450-606 8-162 (460)
499 KOG0240 Kinesin (SMY1 subfamil 46.0 6.3E+02 0.014 30.7 17.6 149 446-607 344-497 (607)
500 TIGR03545 conserved hypothetic 45.4 2.4E+02 0.0051 33.4 12.0 112 486-608 161-272 (555)
No 1
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.47 E-value=0.00017 Score=83.09 Aligned_cols=165 Identities=18% Similarity=0.318 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003779 440 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 519 (796)
Q Consensus 440 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 519 (796)
.+...|++.++++..+--.+...+.....-.+++..+-..+..........+..++.++++++.++......++.+..+.
T Consensus 677 ~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~ 756 (1179)
T TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555444555444444444444444445555555555554444444444444444
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 003779 520 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM 599 (796)
Q Consensus 520 DaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklL 599 (796)
..+..++....++...+..++..|+.++..++...-.++.++..+..++..+..++..+..+...++..+..|+.+.+.+
T Consensus 757 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l 836 (1179)
T TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAAT 836 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444443333322223334444444444444444444444444444444444444444
Q ss_pred HHHHH
Q 003779 600 QSKLR 604 (796)
Q Consensus 600 qSKLR 604 (796)
+.++.
T Consensus 837 ~~~~~ 841 (1179)
T TIGR02168 837 ERRLE 841 (1179)
T ss_pred HHHHH
Confidence 43333
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.35 E-value=0.00038 Score=80.93 Aligned_cols=168 Identities=22% Similarity=0.296 Sum_probs=115.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 003779 439 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE 518 (796)
Q Consensus 439 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aE 518 (796)
..++..|+.-|+.|..+--.+...+.....-.+.|..+-..+.....+-...+..++.+++.+..++..-...+..+..+
T Consensus 673 ~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~ 752 (1164)
T TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE 752 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888888887777777777777777777777777777777777666666555555666666
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhH----h-hhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 003779 519 YANVRLECNAADERAKILASEVIGLEEKALRLRSN----E-LKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 593 (796)
Q Consensus 519 rDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~----e-LKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ 593 (796)
......++.....+...+..++..|+.++..+... . -+.+.++..+..++..+..++..+..+...+...++.|+
T Consensus 753 ~~~~~~el~~l~~~i~~l~~~i~~l~~el~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 832 (1164)
T TIGR02169 753 IENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE 832 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666665555544221 1 113445666777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhh
Q 003779 594 EEKKMMQSKLRKA 606 (796)
Q Consensus 594 EEKklLqSKLR~a 606 (796)
.+...++.++...
T Consensus 833 ~e~~~l~~~~~~l 845 (1164)
T TIGR02169 833 KEIQELQEQRIDL 845 (1164)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666644
No 3
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.32 E-value=0.00032 Score=80.95 Aligned_cols=100 Identities=25% Similarity=0.311 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003779 440 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 519 (796)
Q Consensus 440 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 519 (796)
.+...|++.++++..+.-.+...++..+.-.+.+-.+-..+...++.....+..++.++++++.++......++.+..+.
T Consensus 684 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~ 763 (1179)
T TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555544444444444444555555555555555555555544444444444444444
Q ss_pred HHHHHhhhHHHHHHHHHHHH
Q 003779 520 ANVRLECNAADERAKILASE 539 (796)
Q Consensus 520 DaAq~E~naA~ERaK~LAaE 539 (796)
+....+...+.+....+..+
T Consensus 764 ~~~~~~l~~~~~~~~~l~~~ 783 (1179)
T TIGR02168 764 EELEERLEEAEEELAEAEAE 783 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444333333333333333
No 4
>PRK02224 chromosome segregation protein; Provisional
Probab=98.29 E-value=0.00082 Score=77.72 Aligned_cols=12 Identities=25% Similarity=0.069 Sum_probs=6.3
Q ss_pred CCccccCCCCcc
Q 003779 227 SNAIALGNGHSF 238 (796)
Q Consensus 227 sn~~~~~~g~s~ 238 (796)
-|.|.-.||+|=
T Consensus 25 ~~~i~G~Ng~GK 36 (880)
T PRK02224 25 VTVIHGVNGSGK 36 (880)
T ss_pred eEEEECCCCCCH
Confidence 355555555554
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.26 E-value=0.003 Score=73.64 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003779 440 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ 486 (796)
Q Consensus 440 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNq 486 (796)
.++..++..+++++.+.-.+...++....-.+.+-.+-..+...++.
T Consensus 237 ~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 283 (1164)
T TIGR02169 237 RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKD 283 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666667777777777777777666666666666666666666
No 6
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.05 E-value=0.0062 Score=73.84 Aligned_cols=56 Identities=25% Similarity=0.429 Sum_probs=25.8
Q ss_pred HHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 549 RLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 549 qLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 604 (796)
.++.....++..+..++.++..+.+++..+..++..+...+..+.+....+..+.+
T Consensus 867 ~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 922 (1163)
T COG1196 867 ELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLE 922 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444455554444444444444444444444444443
No 7
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.01 E-value=0.0019 Score=81.66 Aligned_cols=237 Identities=23% Similarity=0.311 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-------HHhhhhHHHHHHHHHhhhHHHHHHHHH
Q 003779 464 EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL-------VELESFRNEYANVRLECNAADERAKIL 536 (796)
Q Consensus 464 ~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~-------~~le~l~aErDaAq~E~naA~ERaK~L 536 (796)
+.+.++-+.|..+...+-..+..-...+.++++....|+.+..... ..++.+-..+..++.|.+.+..+.+.|
T Consensus 890 ~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l 969 (1930)
T KOG0161|consen 890 AEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNL 969 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666655555555554443333333322 333333444556777777777777777
Q ss_pred HHHHHHHHHHHHHHHhHhhhhHHHhhh----hHHHHHHHHHHHHhHHHhhhhHHHHHHHHH-------HHHHHHHHHHHh
Q 003779 537 ASEVIGLEEKALRLRSNELKLERQLEN----SQSEISSYKKKISSLEKERQDFQSTIEALQ-------EEKKMMQSKLRK 605 (796)
Q Consensus 537 AaEVV~LEEk~lqLRS~eLKleKElE~----l~~Er~S~~~q~ssi~kER~~l~stIdaLQ-------EEKklLqSKLR~ 605 (796)
.-|+..+++.+-.| .|..|++|. +...+..-+.++..+.+-...+...|+-|+ .-.+.++.+.|+
T Consensus 970 ~~e~~~~~e~~~kL----~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rk 1045 (1930)
T KOG0161|consen 970 EEEINSLDENISKL----SKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRK 1045 (1930)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766644 333344433 333444444555555555555444444443 222334444444
Q ss_pred hccCCCccCCCCCcccccccccccccccccccccccCCccccccCCCccccccCCCCCCcCcccccccccccchhhHHHH
Q 003779 606 ASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRM 685 (796)
Q Consensus 606 asa~gKa~~~ek~~a~~kDASTsTdDLai~d~~~esSnqE~ldsas~qe~~vs~~pllpe~G~~af~~~~~~Ip~DQlR~ 685 (796)
..+.-+. +..+.+++....... .... ... +.++ ++. -.-.+|.-++
T Consensus 1046 le~el~~------------~~e~~~~~~~~~~el---~~~l-~kk---e~El---------~~l------~~k~e~e~~~ 1091 (1930)
T KOG0161|consen 1046 LEGELKD------------LQESIEELKKQKEEL---DNQL-KKK---ESEL---------SQL------QSKLEDEQAE 1091 (1930)
T ss_pred HHHHHHH------------hhhHHHHHHHHHHHH---HHHH-HHH---HHHH---------HHH------HHHhhHHHHH
Confidence 4332221 111222221000000 0000 000 0011 111 1334566688
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHHH
Q 003779 686 IHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELL 738 (796)
Q Consensus 686 IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELl 738 (796)
+..+--.|.+|.....+|-..|..+.....++.+.+.||.++|++++.+||.+
T Consensus 1092 ~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1092 VAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999988
No 8
>PRK02224 chromosome segregation protein; Provisional
Probab=97.89 E-value=0.019 Score=66.69 Aligned_cols=165 Identities=18% Similarity=0.268 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-------HHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779 440 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDS-------YNQQRSVVNQLKSEMEKLQEEIKVQLVEL 512 (796)
Q Consensus 440 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~-------yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l 512 (796)
.++..|++.|.++..+.-.+...+.......+.|-.+.+.|... +........+|..+.+.|+.++......+
T Consensus 258 ~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l 337 (880)
T PRK02224 258 AEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAA 337 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555554444444332 22233334455555555555555555455
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHH
Q 003779 513 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 592 (796)
Q Consensus 513 e~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaL 592 (796)
..+..+....+.......++.+.+..++..|+.++..++..-=.++++++.+..+++.++.++..+..+..++...|+.|
T Consensus 338 ~~~~~~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l 417 (880)
T PRK02224 338 QAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEEL 417 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHH
Confidence 54444444444444555555555555555555554444444444455555555555555555554444455555555555
Q ss_pred HHHHHHHHHHHH
Q 003779 593 QEEKKMMQSKLR 604 (796)
Q Consensus 593 QEEKklLqSKLR 604 (796)
|+++..|+.++-
T Consensus 418 ~~~~~~l~~~~~ 429 (880)
T PRK02224 418 REERDELREREA 429 (880)
T ss_pred HHHHHHHHHHHH
Confidence 555555554433
No 9
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.88 E-value=0.011 Score=71.72 Aligned_cols=242 Identities=22% Similarity=0.321 Sum_probs=121.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003779 441 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENS-------SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE 513 (796)
Q Consensus 441 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENs-------aLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le 513 (796)
+...|+.+|+++..+...+...+.....-...+-..-+ .+..++..-...+..++.+.++++..+...-..++
T Consensus 668 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 747 (1163)
T COG1196 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELE 747 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567777777776666665555555444444444333 33344444444444444444455444444444444
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-------hHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHH
Q 003779 514 SFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR-------SNELKLERQLENSQSEISSYKKKISSLEKERQDFQ 586 (796)
Q Consensus 514 ~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLR-------S~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~ 586 (796)
.+..+.+..+.+.+...+....+......|++++..+. ...-..+.++..++.++..+..++......+..+.
T Consensus 748 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (1163)
T COG1196 748 ELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLE 827 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444443333 22223333344444444444555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCccCCCCCcccccccccccccccccccccccCCccccccCCCccccccCCCCCCcC
Q 003779 587 STIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPES 666 (796)
Q Consensus 587 stIdaLQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTsTdDLai~d~~~esSnqE~ldsas~qe~~vs~~pllpe~ 666 (796)
..|+.++++...++.++......-.. ....+ +....+
T Consensus 828 ~ei~~l~~~~~~~~~~~~~l~~~~~~---------------~~~~~-------~~~~~~--------------------- 864 (1163)
T COG1196 828 QEIEELEEEIEELEEKLDELEEELEE---------------LEKEL-------EELKEE--------------------- 864 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH---------------HHHHH-------HHHHHH---------------------
Confidence 55555555555555555532221000 00011 000000
Q ss_pred cccccccccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHH
Q 003779 667 GRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLEL 737 (796)
Q Consensus 667 G~~af~~~~~~Ip~DQlR~IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLEL 737 (796)
-......+.+++.-|..++.+++.+-..|+.......+++.....+..++..+..+++.
T Consensus 865 ------------l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 923 (1163)
T COG1196 865 ------------LEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLER 923 (1163)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01112456677777777777777777777777777777777777777777655444433
No 10
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.78 E-value=0.11 Score=61.04 Aligned_cols=237 Identities=19% Similarity=0.242 Sum_probs=118.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003779 436 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 515 (796)
Q Consensus 436 ~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l 515 (796)
....+....||+-|+- |...|+.+|.+=+.|=..-..|+..=..-...+.+|+.+.|+||..+ ..+
T Consensus 414 ~~~~~a~~rLE~dvkk-------LraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl-------~~L 479 (697)
T PF09726_consen 414 NSEPDAISRLEADVKK-------LRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKL-------QNL 479 (697)
T ss_pred ccChHHHHHHHHHHHH-------HHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 3445666677766654 66777777777777766655565544456667777777777777643 233
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhh----HHHHHHHHHHHHhHHHhhhhHHHHHHH
Q 003779 516 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENS----QSEISSYKKKISSLEKERQDFQSTIEA 591 (796)
Q Consensus 516 ~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l----~~Er~S~~~q~ssi~kER~~l~stIda 591 (796)
..-+..=++.+....-|.+..+.-...||.++...|....+.+-...+. ...|. ---+.....|.+|..+|.+
T Consensus 480 ~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~---e~~e~~r~r~~~lE~E~~~ 556 (697)
T PF09726_consen 480 VQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQ---ECAESCRQRRRQLESELKK 556 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccc---hhHHHHHHHHHHHHHHHHH
Confidence 2223222233333333333333334444444443333322211111110 00000 0111233445667777777
Q ss_pred HHHHHHHHHHHHHhhccCCCccCCCCCcccccccccccccccccccccccCCccccccCCCccccccCCCCCCcCccccc
Q 003779 592 LQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLAL 671 (796)
Q Consensus 592 LQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTsTdDLai~d~~~esSnqE~ldsas~qe~~vs~~pllpe~G~~af 671 (796)
|+-|+|..+..++.+.........-. ++ +-.|.+++-.+.-
T Consensus 557 lr~elk~kee~~~~~e~~~~~lr~~~-----~e---~~~~~e~L~~aL~------------------------------- 597 (697)
T PF09726_consen 557 LRRELKQKEEQIRELESELQELRKYE-----KE---SEKDTEVLMSALS------------------------------- 597 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----hh---hhhhHHHHHHHHH-------------------------------
Confidence 77777777777665444221100000 00 0011111111110
Q ss_pred ccccccchhhHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 003779 672 EGLAVNIPHDQMRMIHNINALISELALE---KEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTA 740 (796)
Q Consensus 672 ~~~~~~Ip~DQlR~IdSInaLisELa~E---ReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELlts 740 (796)
.|-|-=..|=..|..| |=.|.+||-++.|++..+..+-..=.+++++++++|.-+.|
T Consensus 598 ------------amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 598 ------------AMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred ------------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1222222222233332 45688888888888888888888888888888888865443
No 11
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.74 E-value=0.069 Score=61.35 Aligned_cols=153 Identities=24% Similarity=0.279 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 003779 445 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 524 (796)
Q Consensus 445 LqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~ 524 (796)
||..|+++-+||-.|+.....-.+-+++|-.+++.|- ..+...+.++++|+++.+.-....+.+..|++....
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~-------~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~ 213 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLE-------AELEQEEEEMEQLKQQQKELTESSEELKEERESLKE 213 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999989999988777666555555555555554 455555566666666666666677888999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-----hHhhhhHHHhhh--hHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHH
Q 003779 525 ECNAADERAKILASEVIGLEEKALRLR-----SNELKLERQLEN--SQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 597 (796)
Q Consensus 525 E~naA~ERaK~LAaEVV~LEEk~lqLR-----S~eLKleKElE~--l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKk 597 (796)
+..++..|.+.|..++..|..+....- -..++.+++-.+ ++.++..+..++.....++...+..+++|.++++
T Consensus 214 q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr 293 (546)
T PF07888_consen 214 QLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLR 293 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 999999999999999998888874321 122222222111 2333444444444444445566666677777777
Q ss_pred HHHHHHH
Q 003779 598 MMQSKLR 604 (796)
Q Consensus 598 lLqSKLR 604 (796)
.++.+|.
T Consensus 294 ~~qe~lq 300 (546)
T PF07888_consen 294 SAQEQLQ 300 (546)
T ss_pred HHHHHHH
Confidence 7777665
No 12
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.69 E-value=0.0047 Score=78.36 Aligned_cols=159 Identities=22% Similarity=0.291 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHH--------------HHHHHHHHHH
Q 003779 446 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL--------------QEEIKVQLVE 511 (796)
Q Consensus 446 qqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~L--------------q~Ei~aQ~~~ 511 (796)
.|+++++-++|--|+.-|+..++..+-+...+..|-...|+-.+.+.-+..++++. ..-+.--.-.
T Consensus 1371 ~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~ 1450 (1930)
T KOG0161|consen 1371 LQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKK 1450 (1930)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999998655555555555443 3333333344
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHH
Q 003779 512 LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA 591 (796)
Q Consensus 512 le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIda 591 (796)
.+.+..|+|+++.+.......++.|..++..+-+.+-+++...=+++.+++.+..-+....+.+..+++++-.+..+++.
T Consensus 1451 ~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~e 1530 (1930)
T KOG0161|consen 1451 LEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEE 1530 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55668889999999999999999999999888888877766666666666666655555555555555555555555555
Q ss_pred HHHHHHHHHHHHH
Q 003779 592 LQEEKKMMQSKLR 604 (796)
Q Consensus 592 LQEEKklLqSKLR 604 (796)
||..+..|+..|+
T Consensus 1531 lQ~aLeElE~~le 1543 (1930)
T KOG0161|consen 1531 LQAALEELEAALE 1543 (1930)
T ss_pred HHHHHHHHHHHhh
Confidence 5544444444433
No 13
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.67 E-value=0.0073 Score=74.03 Aligned_cols=164 Identities=14% Similarity=0.233 Sum_probs=98.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHH---HHhhHHHHHHHHHHHHHHHHHHHHHH--
Q 003779 439 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSL---TDSY---NQQRSVVNQLKSEMEKLQEEIKVQLV-- 510 (796)
Q Consensus 439 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaL---t~~y---NqQ~~~v~qLk~~mE~Lq~Ei~aQ~~-- 510 (796)
..++..|++.|.+++.+--.+...|+......+.+..+-..+ .... .+....+..|+.++++|..++..+..
T Consensus 743 ~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~ 822 (1311)
T TIGR00606 743 EKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDR 822 (1311)
T ss_pred HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 356777888888888887777777777777777776666333 2222 44455566677777776665554332
Q ss_pred -------HhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHH----------hhhhHHHHHHHHH
Q 003779 511 -------ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQ----------LENSQSEISSYKK 573 (796)
Q Consensus 511 -------~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKE----------lE~l~~Er~S~~~ 573 (796)
.+..+..+++.++.+.+...+....+..++..|+.++..++...+++.+. ++.+..++..+..
T Consensus 823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~ 902 (1311)
T TIGR00606 823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIR 902 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334455555555555557777777777777777777777776665543 3334444444544
Q ss_pred HHHhHHHhhhhHHHHHHHHHHHHHHHHHH
Q 003779 574 KISSLEKERQDFQSTIEALQEEKKMMQSK 602 (796)
Q Consensus 574 q~ssi~kER~~l~stIdaLQEEKklLqSK 602 (796)
++.-+..+-..+...++.++.++..+..+
T Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1311)
T TIGR00606 903 EIKDAKEQDSPLETFLEKDQQEKEELISS 931 (1311)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 44544444444444455554444443333
No 14
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.56 E-value=0.0095 Score=68.08 Aligned_cols=60 Identities=22% Similarity=0.237 Sum_probs=49.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHHHHHHHh
Q 003779 684 RMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNM 743 (796)
Q Consensus 684 R~IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELltsq~m 743 (796)
+.-|.=+-.|+|..+|..++-++|+-.-..=-+|.+.|.||.+-.+.+.+||+-.+.-.-
T Consensus 403 ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~~~ 462 (546)
T PF07888_consen 403 KEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADEKW 462 (546)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 344444457889999999999999999888899999999999999999999998765443
No 15
>PRK11637 AmiB activator; Provisional
Probab=97.51 E-value=0.044 Score=59.73 Aligned_cols=79 Identities=13% Similarity=0.149 Sum_probs=51.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003779 437 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 515 (796)
Q Consensus 437 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l 515 (796)
...++...|++-|+++-.+.-.++..+.....-.+.|..+-..+...+|+....+.+++.++++++.+|......++..
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777776666666666666666666666677777776666666666666666665555444433
No 16
>PRK03918 chromosome segregation protein; Provisional
Probab=97.38 E-value=0.47 Score=55.33 Aligned_cols=63 Identities=24% Similarity=0.326 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003779 442 FAALEQHIEDLTQEKFALQRSLEASRA----------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 504 (796)
Q Consensus 442 faaLqqhIeDLT~EKfaLqR~L~~s~~----------l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 504 (796)
.+.|++.|+.+..+.-.+...++..+. --+.|..+...+-.+|+.....+.+++.+++.|+++
T Consensus 202 ~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~ 274 (880)
T PRK03918 202 LEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKE 274 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555444444433322 222333333344445555444455555554444444
No 17
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.29 E-value=0.043 Score=60.34 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003779 440 EDFAALEQHIEDLTQEKFALQRSLEASRALSE----SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV 507 (796)
Q Consensus 440 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~E----sLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~a 507 (796)
+.+..+++.|+.+..+.-.++-.++..++..+ .+......+...++......++++.++++|+.+|..
T Consensus 174 ~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~ 245 (562)
T PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLN 245 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555554444443322222 222334444445555555555555555555554433
No 18
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.25 E-value=0.28 Score=55.58 Aligned_cols=217 Identities=23% Similarity=0.291 Sum_probs=136.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHh-------h
Q 003779 483 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE-------L 555 (796)
Q Consensus 483 ~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~e-------L 555 (796)
........+.+.+..|+....|+..=...+++|+.|....+.+.+...++......+|..|+.++.++|+.- -
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~ 361 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE 361 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 356667777788888888888888888999999999999999999999999999999999999999988763 1
Q ss_pred -------hhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCCCcccccccccc
Q 003779 556 -------KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTS 628 (796)
Q Consensus 556 -------KleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTs 628 (796)
.+...|+.+..|.+.+++.......|...+..+++...-..+-++.||+-+-- .. .+.+.....+
T Consensus 362 ~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~k--e~------eaaKasEa~A 433 (522)
T PF05701_consen 362 KAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALK--EA------EAAKASEALA 433 (522)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH------HHHHHHHHHH
Confidence 13344555566666666666666666666666666666666666666663221 11 0011111113
Q ss_pred cccccccccccccCCccccccCCCccccccCCCCCCcCcccccccccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003779 629 TEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALS 708 (796)
Q Consensus 629 TdDLai~d~~~esSnqE~ldsas~qe~~vs~~pllpe~G~~af~~~~~~Ip~DQlR~IdSInaLisELa~EReravsaLa 708 (796)
..+| +....+. ... ....+..+ |. +.|+ ++--..|......=.+-+-...+
T Consensus 434 la~i----k~l~e~~----~~~---~~~~~~~~-----~~-------Vtls------~eEy~~L~~ka~e~ee~a~kkva 484 (522)
T PF05701_consen 434 LAEI----KALSESE----SSS---RASDSESS-----SK-------VTLS------LEEYESLSKKAEEAEELAEKKVA 484 (522)
T ss_pred HHHH----HHhhccc----ccc---cccccCCC-----CC-------eeec------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 1110000 000 00000011 22 4455 33344555555555555555677
Q ss_pred HHHHhhHHHHHHhHHHHHHHHHHHhHHH
Q 003779 709 SELAQSSKLKDLNNELSRKLEHQTQRLE 736 (796)
Q Consensus 709 ~esr~~~dLk~lN~ELsRKLE~qtQRLE 736 (796)
.+..++..++.-.++.-.|||.....+|
T Consensus 485 ~A~aqve~ak~se~e~l~kle~~~~e~~ 512 (522)
T PF05701_consen 485 AAMAQVEAAKASEKEILEKLEEAMKEIE 512 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888999899888877655
No 19
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.24 E-value=0.03 Score=59.50 Aligned_cols=44 Identities=16% Similarity=0.213 Sum_probs=21.6
Q ss_pred HhhhhHHHHHHHHHHHHhHHHhhh----hHHHHHHHHHHHHHHHHHHH
Q 003779 560 QLENSQSEISSYKKKISSLEKERQ----DFQSTIEALQEEKKMMQSKL 603 (796)
Q Consensus 560 ElE~l~~Er~S~~~q~ssi~kER~----~l~stIdaLQEEKklLqSKL 603 (796)
+++.+..++..+..++..+++.+. -=..+|.+|+.+.+.||...
T Consensus 245 ~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 245 KIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLT 292 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433332 22356667777777666544
No 20
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.22 E-value=0.056 Score=65.71 Aligned_cols=140 Identities=18% Similarity=0.288 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHhhhHHHHHHHHH
Q 003779 464 EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF-------RNEYANVRLECNAADERAKIL 536 (796)
Q Consensus 464 ~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l-------~aErDaAq~E~naA~ERaK~L 536 (796)
...++-.+..-..++++..+++.--.++++++++.+.--.||+.-...+..+ +.++..++....+...+...|
T Consensus 298 ~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l 377 (1074)
T KOG0250|consen 298 DTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRL 377 (1074)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555556666776676666666666665555555554444444444 444444444455555555555
Q ss_pred HHHHHHHHHHH-HHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 003779 537 ASEVIGLEEKA-LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 603 (796)
Q Consensus 537 AaEVV~LEEk~-lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKL 603 (796)
-.++..++++. ..+-+...+.+.+++.|..|+..++-++.+|..|++.|+..+...|||+-..+.++
T Consensus 378 ~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i 445 (1074)
T KOG0250|consen 378 EKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEI 445 (1074)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 55555555555 44455556777888888888888888888888888888888888888875554443
No 21
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.17 E-value=0.047 Score=67.28 Aligned_cols=125 Identities=10% Similarity=0.117 Sum_probs=52.7
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 003779 478 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKL 557 (796)
Q Consensus 478 saLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKl 557 (796)
..|...-++++..+..++.+++-|+.++..-...++.++.+.+....+........+....++..|..+|... .....
T Consensus 891 ~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y--~~~~~ 968 (1311)
T TIGR00606 891 VELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENK--IQDGK 968 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcCC
Confidence 3344444444444444444444444444444444444443333333333333333333333333344444332 11222
Q ss_pred HHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 558 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 558 eKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 604 (796)
.++++.+..++..+...+..++.+...+...|+++..+...++..-|
T Consensus 969 ~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr 1015 (1311)
T TIGR00606 969 DDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQER 1015 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444443333
No 22
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.17 E-value=0.097 Score=57.66 Aligned_cols=167 Identities=16% Similarity=0.227 Sum_probs=90.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779 437 KHNEDFAALEQHIEDLTQEKFALQRSLEASRA----LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 512 (796)
Q Consensus 437 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~----l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l 512 (796)
.-..+...|+..|+.+..+--.+++.+...++ ..+.|-.+-+.+...+++-..++..|++++..+..++.....+|
T Consensus 178 e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L 257 (562)
T PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAAL 257 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 34455666777777776666656555554443 34556677777777777777777777777776655543333333
Q ss_pred hhhHHHHHHHHH------------------------------hhhHHHHHHHHHHHHHHHHHHHHH---HHHhHhhhhHH
Q 003779 513 ESFRNEYANVRL------------------------------ECNAADERAKILASEVIGLEEKAL---RLRSNELKLER 559 (796)
Q Consensus 513 e~l~aErDaAq~------------------------------E~naA~ERaK~LAaEVV~LEEk~l---qLRS~eLKleK 559 (796)
..+..++..+.. .....+++.+.|..+...|++.+. +.+..--++.+
T Consensus 258 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~ 337 (562)
T PHA02562 258 NKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSK 337 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322222222211 122233444455555555555544 22222333455
Q ss_pred HhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 003779 560 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 603 (796)
Q Consensus 560 ElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKL 603 (796)
.+++++.++...+..+..+..++..++..|+.|+++...+..+|
T Consensus 338 ~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l 381 (562)
T PHA02562 338 KLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEEL 381 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHH
Confidence 55566666666666666666666666666666664433333333
No 23
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.14 Score=60.99 Aligned_cols=141 Identities=23% Similarity=0.271 Sum_probs=78.4
Q ss_pred HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCCCcccccccccccccccccccccccCCccccc
Q 003779 569 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHD 648 (796)
Q Consensus 569 ~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTsTdDLai~d~~~esSnqE~ld 648 (796)
-..+.++..+.+-|+-++++|+-||-+.|.+|.||.++.-..-. -++-| .+..+.+.++ +
T Consensus 468 tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~---------------l~~ql----kq~q~a~~~~-~ 527 (1118)
T KOG1029|consen 468 TTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQE---------------LNHQL----KQKQSAHKET-T 527 (1118)
T ss_pred chHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH---------------HHHHH----HHhhhhccCc-c
Confidence 34455667777888888999999999999999999865432111 11111 1111111111 0
Q ss_pred cCCCccccccCCCCCCcCcccccccccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh-------
Q 003779 649 DASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLN------- 721 (796)
Q Consensus 649 sas~qe~~vs~~pllpe~G~~af~~~~~~Ip~DQlR~IdSInaLisELa~EReravsaLa~esr~~~dLk~lN------- 721 (796)
. +...|..- . ..--.+|.-|.+-++||+.|.+.-++.+-+--.++.+||+.-
T Consensus 528 ~-----------------~~s~L~aa---~-~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lak 586 (1118)
T KOG1029|consen 528 Q-----------------RKSELEAA---R-RKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAK 586 (1118)
T ss_pred h-----------------HHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 0 00111100 0 011145677888888888888877777766666666665431
Q ss_pred -----HHHHHHHHHHHhHHHHHHHHHhhhhcccc
Q 003779 722 -----NELSRKLEHQTQRLELLTAQNMANENISF 750 (796)
Q Consensus 722 -----~ELsRKLE~qtQRLELltsq~ma~e~~~a 750 (796)
++-...-|.+|.+|||.--+.......++
T Consensus 587 e~~yk~e~d~~ke~et~~lel~~~ke~e~~~asa 620 (1118)
T KOG1029|consen 587 EELYKNERDKLKEAETKALELIGEKEAESAPASA 620 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhc
Confidence 22233345667888887666654444333
No 24
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.13 E-value=0.13 Score=53.98 Aligned_cols=74 Identities=19% Similarity=0.287 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH--------HHhhhhHHHHHHHHHHHHHHHHHHHHh----h
Q 003779 539 EVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL--------EKERQDFQSTIEALQEEKKMMQSKLRK----A 606 (796)
Q Consensus 539 EVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi--------~kER~~l~stIdaLQEEKklLqSKLR~----a 606 (796)
++...+.++.+++.....++.++..++.++..++.++..+ ..++.++...+..++.+...++.+|.+ +
T Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~A 276 (423)
T TIGR01843 197 ELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQRLIIRS 276 (423)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEEC
Confidence 3444444444444444444444444444444444443332 233444555555555555555555553 4
Q ss_pred ccCCCc
Q 003779 607 SGSGKS 612 (796)
Q Consensus 607 sa~gKa 612 (796)
+-.|.+
T Consensus 277 P~dG~V 282 (423)
T TIGR01843 277 PVDGTV 282 (423)
T ss_pred CCCcEE
Confidence 445554
No 25
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.11 E-value=0.091 Score=64.46 Aligned_cols=57 Identities=19% Similarity=0.177 Sum_probs=30.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 003779 684 RMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTA 740 (796)
Q Consensus 684 R~IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELlts 740 (796)
.+.+-...|..+++.-+.++-...........+++....++..+++...+.++.+..
T Consensus 813 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~ 869 (1201)
T PF12128_consen 813 ELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEE 869 (1201)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555544444444444445556666666666666666665555444
No 26
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.08 E-value=0.29 Score=56.99 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=31.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhH
Q 003779 684 RMIHNINALISELALEKEELVQALSSELAQSSKLKDLNN 722 (796)
Q Consensus 684 R~IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ 722 (796)
+|...+++.+..++.||++|...|......|-.|-.+-+
T Consensus 346 ~m~~f~~~a~~~~eeEr~~L~~qL~eqk~~~q~L~h~va 384 (617)
T PF15070_consen 346 AMVEFFNSALAQAEEERARLRRQLEEQKVQCQHLAHQVA 384 (617)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 678889999999999999999999888777766544433
No 27
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.08 E-value=1.6 Score=54.97 Aligned_cols=111 Identities=16% Similarity=0.263 Sum_probs=57.3
Q ss_pred ccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-----hhHHHHHHHHHHHHHH
Q 003779 428 ENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ-----QRSVVNQLKSEMEKLQ 502 (796)
Q Consensus 428 e~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNq-----Q~~~v~qLk~~mE~Lq 502 (796)
+-..+|.-+.++.++..|.+-|++|.+-+-.|.+.-++-.+| +.+... -+.||+ ....+-..+.+++.++
T Consensus 208 ~~l~~~l~~l~~~~i~~l~e~~~~~~~~~~~le~l~~~~~~l-~~i~~~----y~~y~~~~~~~~~~~~~~~~~~~~~~~ 282 (1353)
T TIGR02680 208 DALTEALPPLDDDELTDVADALEQLDEYRDELERLEALERAL-RNFLQR----YRRYARTMLRRRATRLRSAQTQYDQLS 282 (1353)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888899999999999998887776665544333333 333322 344444 2223333344444444
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003779 503 EEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL 543 (796)
Q Consensus 503 ~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~L 543 (796)
.++......++....+.+.++.++.....+...+..|...|
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l 323 (1353)
T TIGR02680 283 RDLGRARDELETAREEERELDARTEALEREADALRTRLEAL 323 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444333444444444444444444444444444433333
No 28
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.02 E-value=0.2 Score=52.57 Aligned_cols=63 Identities=22% Similarity=0.351 Sum_probs=36.6
Q ss_pred HHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHH--------HHHHHHHHHHHHHHHHHHhh
Q 003779 544 EEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQ--------STIEALQEEKKMMQSKLRKA 606 (796)
Q Consensus 544 EEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~--------stIdaLQEEKklLqSKLR~a 606 (796)
+.+....+..-..++.++..+..++..++.++..+..+...+. ..+..++.+++.++.++..+
T Consensus 195 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~ 265 (423)
T TIGR01843 195 RLELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKA 265 (423)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666677777777777666666655543322 22344555566666666543
No 29
>PRK11637 AmiB activator; Provisional
Probab=97.01 E-value=0.32 Score=53.14 Aligned_cols=73 Identities=19% Similarity=0.262 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779 440 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 512 (796)
Q Consensus 440 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l 512 (796)
.++..+++-|.++..++-.++..|....+=.+.+..+-..+....+.....+.+|+.++++++.+|..+...+
T Consensus 54 ~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 54 QDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666655555555555555555666666666666666666666655554443
No 30
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.97 E-value=0.27 Score=59.17 Aligned_cols=158 Identities=22% Similarity=0.247 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 003779 444 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 523 (796)
Q Consensus 444 aLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq 523 (796)
..+|..-+....|+.|-+.+..+|+..+++-.-+.+|-=.+++|.-...+-..+-|||++|.+-+++ .+.+-+.|+
T Consensus 334 ~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a----~r~q~eka~ 409 (980)
T KOG0980|consen 334 QIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLA----SRTQLEKAQ 409 (980)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 4567777888899999999999999999999999999999999999998888888888887443322 222222222
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh----------------------------HHHhhhhHHHHHHHHHHH
Q 003779 524 LECNAADERAKILASEVIGLEEKALRLRSNELKL----------------------------ERQLENSQSEISSYKKKI 575 (796)
Q Consensus 524 ~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKl----------------------------eKElE~l~~Er~S~~~q~ 575 (796)
--..++.-.+.........|-++..+||....-+ ...++++..+.....+++
T Consensus 410 ~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~ 489 (980)
T KOG0980|consen 410 VLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKT 489 (980)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2222222333333444455555555555543322 233455555666666677
Q ss_pred HhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 003779 576 SSLEKERQDFQSTIEALQEEKKMMQSKLRK 605 (796)
Q Consensus 576 ssi~kER~~l~stIdaLQEEKklLqSKLR~ 605 (796)
+.+.+-=.++.-++..|++|.+.||-.+-+
T Consensus 490 e~~~~~le~l~~El~~l~~e~~~lq~~~~~ 519 (980)
T KOG0980|consen 490 ESQAKALESLRQELALLLIELEELQRTLSN 519 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 766666666777777777777777777654
No 31
>PRK09039 hypothetical protein; Validated
Probab=96.90 E-value=0.12 Score=55.85 Aligned_cols=73 Identities=21% Similarity=0.241 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 003779 527 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM 599 (796)
Q Consensus 527 naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklL 599 (796)
..+..|+..|+.+...+.....+.+.+-.++..|++.|+..+.++..++.+++..-.+.+..|+.|+.++..+
T Consensus 112 ~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 112 AAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666666666666666666666666655555555555555444333
No 32
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.88 E-value=1.6 Score=52.19 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 003779 441 DFAALEQHIEDLTQEKFALQR 461 (796)
Q Consensus 441 ~faaLqqhIeDLT~EKfaLqR 461 (796)
+..+|++.+.+|-.++-.+.+
T Consensus 233 e~e~l~~~~~el~~~~~~~~~ 253 (908)
T COG0419 233 EIEALEERLAELEEEKERLEE 253 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666555555555
No 33
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.84 E-value=0.11 Score=55.89 Aligned_cols=76 Identities=29% Similarity=0.315 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHh----hhhHHHHHHHHHHHHHHHHHH
Q 003779 527 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKE----RQDFQSTIEALQEEKKMMQSK 602 (796)
Q Consensus 527 naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kE----R~~l~stIdaLQEEKklLqSK 602 (796)
..+.+..+.+-.|+...-.++.+++.+.-.+...++....++..+..++..+++. |+-=.++|.+|+.+...||..
T Consensus 207 ~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 207 DRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333333444444444444444444444442 333345666777766666653
No 34
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.83 E-value=0.17 Score=61.05 Aligned_cols=107 Identities=26% Similarity=0.383 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHH-------hHhhhhHHHh
Q 003779 490 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC-NAADERAKILASEVIGLEEKALRLR-------SNELKLERQL 561 (796)
Q Consensus 490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~-naA~ERaK~LAaEVV~LEEk~lqLR-------S~eLKleKEl 561 (796)
.+.-|+-++|.|++-+..-...||-+++|..+-=-.. +...-+-|.|...-+.|-+-+-||| -...|+.|++
T Consensus 326 RaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kel 405 (1243)
T KOG0971|consen 326 RAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKEL 405 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 3445566666666666666667777777776532222 1223344444444455555554444 4567888888
Q ss_pred hhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 003779 562 ENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 596 (796)
Q Consensus 562 E~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK 596 (796)
|..+.|+.-+++.-+.+..+=+.+.++|.-|||..
T Consensus 406 E~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQV 440 (1243)
T KOG0971|consen 406 EKKNSELEELRRQKERLSRELDQAESTIADLKEQV 440 (1243)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888765
No 35
>PRK03918 chromosome segregation protein; Provisional
Probab=96.82 E-value=0.35 Score=56.34 Aligned_cols=74 Identities=14% Similarity=0.197 Sum_probs=32.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh------HHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 003779 523 RLECNAADERAKILASEVIGLEEKALRLRSNELKL------ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 596 (796)
Q Consensus 523 q~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKl------eKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK 596 (796)
...+..-.++.+.+..|+..|++++.+++...-+. -+.++.+......+...+..+.+++..+...++.|++++
T Consensus 251 ~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l 330 (880)
T PRK03918 251 EGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI 330 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444555555555555555443222111 111222333333444555555555555555555554444
No 36
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.81 E-value=0.054 Score=56.64 Aligned_cols=118 Identities=25% Similarity=0.332 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh---------HhhhhHH
Q 003779 489 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS---------NELKLER 559 (796)
Q Consensus 489 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS---------~eLKleK 559 (796)
..+..|--++.+|...+.-+.-+|+.+++|..++.-.+.+.......|.-+|..+|.++..+|. .-+|.++
T Consensus 10 ~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~ 89 (239)
T COG1579 10 LAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDER 89 (239)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 3444555555555555555555555555555555555555555555555555555555544433 4466677
Q ss_pred HhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 003779 560 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 606 (796)
Q Consensus 560 ElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~a 606 (796)
++..|..|+....++...++.|=.+|...++.|+++...++.++.++
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~ 136 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERL 136 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999998888888888743
No 37
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.81 E-value=0.22 Score=48.12 Aligned_cols=132 Identities=19% Similarity=0.290 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003779 464 EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL 543 (796)
Q Consensus 464 ~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~L 543 (796)
+.+.+-++.|...+-.|-+++-+....|..|+..+.+|+.+|..-...|..++.-.+..-... ..+-.|..-|..|
T Consensus 10 d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~----~~~E~l~rriq~L 85 (143)
T PF12718_consen 10 DNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRK----SNAEQLNRRIQLL 85 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HhHHHHHhhHHHH
Confidence 334444455555555555555555555555555555555554444444433332222221111 1122566666666
Q ss_pred HHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 003779 544 EEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM 599 (796)
Q Consensus 544 EEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklL 599 (796)
|+++-+.-..---+...|..+....+-+.+++..|+.+|+....-++.|....+.+
T Consensus 86 Eeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~ 141 (143)
T PF12718_consen 86 EEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEA 141 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 66666554433334455566667788888899988888888887777776655443
No 38
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.76 E-value=0.11 Score=65.39 Aligned_cols=170 Identities=16% Similarity=0.203 Sum_probs=110.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779 439 NEDFAALEQHIEDLTQEKFALQRSLEASRA------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 512 (796)
Q Consensus 439 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~------l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l 512 (796)
.+.++.|+.-++.|.+++-.+.+-++...+ -.+.+..+-+.|..+..++...+.+++.+++.++.++..-...+
T Consensus 313 ~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeL 392 (1486)
T PRK04863 313 ARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEV 392 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888887777666665554433 23445556666777777777777777777777777777666667
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHH
Q 003779 513 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 592 (796)
Q Consensus 513 e~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaL 592 (796)
+.++.++...+.+...+..++..+...+..|+.= .++ +=-..=..++|...+..|..++..++.++.++...++.+
T Consensus 393 eeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~-~~~---~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~l 468 (1486)
T PRK04863 393 DELKSQLADYQQALDVQQTRAIQYQQAVQALERA-KQL---CGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVA 468 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---hCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776666666666666666666666655544421 111 100111234566777777888887777777888888888
Q ss_pred HHHHHHHHHHHHh-hccCCCc
Q 003779 593 QEEKKMMQSKLRK-ASGSGKS 612 (796)
Q Consensus 593 QEEKklLqSKLR~-asa~gKa 612 (796)
+.+++-+..++.. ....|++
T Consensus 469 ea~leql~~~~~~l~~~~Gkv 489 (1486)
T PRK04863 469 QAAHSQFEQAYQLVRKIAGEV 489 (1486)
T ss_pred HHHHHHHHHHHHHHHHHcCCc
Confidence 8777777777664 4556666
No 39
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.76 E-value=0.32 Score=51.11 Aligned_cols=159 Identities=23% Similarity=0.296 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHhhhh--HHHH
Q 003779 449 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ-------LVELESF--RNEY 519 (796)
Q Consensus 449 IeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ-------~~~le~l--~aEr 519 (796)
|..|..+++.|.+-..-.++..+.+-.|-+++-++|=..--.+..++.++-+++.+|+.- ...+.++ .-||
T Consensus 12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~ 91 (239)
T COG1579 12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDEREL 91 (239)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 334455666665555555555555555555555555555555555555555555554433 3333333 5678
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhh----hHHHHHHHHHHHHhHHHhhhhHHHHHHHHHH-
Q 003779 520 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN----SQSEISSYKKKISSLEKERQDFQSTIEALQE- 594 (796)
Q Consensus 520 DaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~----l~~Er~S~~~q~ssi~kER~~l~stIdaLQE- 594 (796)
.+...|...|.+|...|-.|++.|++++..+.-...-+...+.. +.+...+.+.++.-|..++..+.+..+.|-+
T Consensus 92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~ 171 (239)
T COG1579 92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEK 171 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888999999999998888888887776654332222222222 2333344444555555555555544444443
Q ss_pred ---HHHHHHHHHHhhc
Q 003779 595 ---EKKMMQSKLRKAS 607 (796)
Q Consensus 595 ---EKklLqSKLR~as 607 (796)
+.=....++|+..
T Consensus 172 l~~ell~~yeri~~~~ 187 (239)
T COG1579 172 LDPELLSEYERIRKNK 187 (239)
T ss_pred cCHHHHHHHHHHHhcC
Confidence 3344456666433
No 40
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.74 E-value=0.16 Score=57.87 Aligned_cols=146 Identities=19% Similarity=0.277 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Q 003779 459 LQRSLEASRALSESLAAENSSLTDSYN---QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 535 (796)
Q Consensus 459 LqR~L~~s~~l~EsLa~ENsaLt~~yN---qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~ 535 (796)
+.+.|...++..+.|..|-+.|..+|- .-...+.+++.+++.++.++..-...+..-...|..++-++.+..++...
T Consensus 315 l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~lee 394 (569)
T PRK04778 315 LPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEE 394 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 556667777777788888777777763 33555677777777777777766666777777788888888888999999
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHh--HHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 536 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS--LEKERQDFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 536 LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ss--i~kER~~l~stIdaLQEEKklLqSKLR 604 (796)
+..+.+.+.+.+..||..+..+++.++.++..+..+++.+.. +-.--.....-+..++++.+.|..+|.
T Consensus 395 ie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~ 465 (569)
T PRK04778 395 IEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELE 465 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998888888888877766665552 111123455556666666666666555
No 41
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.70 E-value=1.3 Score=54.42 Aligned_cols=152 Identities=18% Similarity=0.229 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Q 003779 461 RSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEV 540 (796)
Q Consensus 461 R~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEV 540 (796)
|.|--.+.-.+.|-..-.+....-++-.+++....++|+++..+|..-...|..++.|-.-+..+.+++...--.|.-++
T Consensus 230 rEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~ 309 (1200)
T KOG0964|consen 230 RELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKI 309 (1200)
T ss_pred hHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 45555555666666666666666677777778888888888888888888888888888888888888888887888888
Q ss_pred HHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh-hccCCCc
Q 003779 541 IGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK-ASGSGKS 612 (796)
Q Consensus 541 V~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~-asa~gKa 612 (796)
-.|++++..-+-++=-+...++++.+++..-..+++.|...+..+..+=+.+-+-...|+.+.+- ..-.|+.
T Consensus 310 kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~ 382 (1200)
T KOG0964|consen 310 KDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRY 382 (1200)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 88888888877777778889999999999999999999999999999999999999999998886 4444554
No 42
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.68 E-value=1.2 Score=56.80 Aligned_cols=138 Identities=20% Similarity=0.246 Sum_probs=88.0
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHH------HHHHHHHHHHHHHHHhhhhHH
Q 003779 447 QHIEDLT---QEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS------EMEKLQEEIKVQLVELESFRN 517 (796)
Q Consensus 447 qhIeDLT---~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~------~mE~Lq~Ei~aQ~~~le~l~a 517 (796)
.+||+.+ .+|..-.+.|++.......+.++-..|..+-+.......+.+. ++.+++.++......++.+..
T Consensus 283 ~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee 362 (1486)
T PRK04863 283 VHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEE 362 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455543 4444455555555554444444444444433333333222222 222334455555666777778
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhh
Q 003779 518 EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD 584 (796)
Q Consensus 518 ErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~ 584 (796)
+.........++.++...+..++..+|+++..++...-+.+.++..+..++..|...+..+++-+.-
T Consensus 363 ~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~ 429 (1486)
T PRK04863 363 RLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQL 429 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888887777888888888888888888777666643
No 43
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.63 E-value=0.95 Score=45.96 Aligned_cols=162 Identities=19% Similarity=0.291 Sum_probs=86.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003779 440 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 519 (796)
Q Consensus 440 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 519 (796)
.+++.|+.+|+++..|--.|.+---++..--.-.-+.+..|-+--..-...|-.|+..+.+.+....+---.+-..-+|.
T Consensus 19 n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el 98 (194)
T PF15619_consen 19 NELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEEL 98 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788889999999998877776666555445555555555444444445555566555555543332222222222222
Q ss_pred HHHHHhhhHHHHHHHHHHH-----HHHHHHHHHHHHHhHhhhhHHHhhh----hHHHHHHHHHHHHhHHHhhhhHHHHHH
Q 003779 520 ANVRLECNAADERAKILAS-----EVIGLEEKALRLRSNELKLERQLEN----SQSEISSYKKKISSLEKERQDFQSTIE 590 (796)
Q Consensus 520 DaAq~E~naA~ERaK~LAa-----EVV~LEEk~lqLRS~eLKleKElE~----l~~Er~S~~~q~ssi~kER~~l~stId 590 (796)
-. .....-+.+.|.. |...|..++-.+...--...+.+.. +.-.-+++.+++..-.+--..++..+.
T Consensus 99 ~k----~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~ 174 (194)
T PF15619_consen 99 LK----TKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVK 174 (194)
T ss_pred HH----HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2222222222222 2333333333332221111222221 222225666666666666778889999
Q ss_pred HHHHHHHHHHHHHHh
Q 003779 591 ALQEEKKMMQSKLRK 605 (796)
Q Consensus 591 aLQEEKklLqSKLR~ 605 (796)
.|++|...|+.+|+.
T Consensus 175 ~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 175 SLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999973
No 44
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.61 E-value=0.43 Score=49.32 Aligned_cols=48 Identities=27% Similarity=0.288 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 003779 693 ISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTA 740 (796)
Q Consensus 693 isELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELlts 740 (796)
+..+..|=.++...+.....+++.|+..|..|.+.|..+.+++.-...
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~ 258 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEERE 258 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHH
Confidence 344444555555556666666666666777777777666666654433
No 45
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.59 E-value=2.6 Score=50.39 Aligned_cols=170 Identities=22% Similarity=0.302 Sum_probs=124.4
Q ss_pred cccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHH-------------
Q 003779 431 HGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE------------- 497 (796)
Q Consensus 431 ~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~------------- 497 (796)
-|-+|--.-.++..|+|-+.-+-.||-+|...|+.+|.-.+.=..+-+..+++.|..+..|++|+..
T Consensus 256 ~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~ 335 (717)
T PF09730_consen 256 SDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSE 335 (717)
T ss_pred chhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcc
Confidence 4667777788999999999999999999999999999988888888888888899888888888871
Q ss_pred ------------------HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHH
Q 003779 498 ------------------MEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 559 (796)
Q Consensus 498 ------------------mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleK 559 (796)
++-|+....+-..++..++.|..+.+.+++...++.+. +...++.++..|......+++
T Consensus 336 ~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~---ek~~~~~e~q~L~ekl~~lek 412 (717)
T PF09730_consen 336 KERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQ---EKDRLESEVQNLKEKLMSLEK 412 (717)
T ss_pred cccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 24445555555556666677777777666666664443 334455555555555555566
Q ss_pred HhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 003779 560 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 603 (796)
Q Consensus 560 ElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKL 603 (796)
....-.+.+..+++++..+..-.++-+..|...|+|+-.+--=|
T Consensus 413 ~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeL 456 (717)
T PF09730_consen 413 SSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEEL 456 (717)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 66566677778888888888888888878888887765444333
No 46
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.58 E-value=0.23 Score=61.27 Aligned_cols=168 Identities=24% Similarity=0.298 Sum_probs=107.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHH---
Q 003779 437 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ----QRSVVNQLKSEMEKLQEEIKVQL--- 509 (796)
Q Consensus 437 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNq----Q~~~v~qLk~~mE~Lq~Ei~aQ~--- 509 (796)
...+.-+-|++.|+.++.+...|+| ++.+|++.=..|+......-++ .-..+.+++++|+-+++..+.-+
T Consensus 462 ~~~~~~keL~e~i~~lk~~~~el~~---~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~ 538 (1317)
T KOG0612|consen 462 ELEEMDKELEETIEKLKSEESELQR---EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSL 538 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667899999999999999998 4444444433333322222222 22344555555655555444332
Q ss_pred HHhhhhHHHHHHHHHhhhH-----------HHHHHHHHHHHHH---HHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHH
Q 003779 510 VELESFRNEYANVRLECNA-----------ADERAKILASEVI---GLEEKALRLRSNELKLERQLENSQSEISSYKKKI 575 (796)
Q Consensus 510 ~~le~l~aErDaAq~E~na-----------A~ERaK~LAaEVV---~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ 575 (796)
-.+.+++.+.+.+.+++.+ ..+-.+.++.|.. .+++++-.+-....|+.++..+++.+...++++.
T Consensus 539 ~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~ 618 (1317)
T KOG0612|consen 539 EKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQR 618 (1317)
T ss_pred hhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333445555555555553 3334444444444 8888888888888999999999999999999998
Q ss_pred HhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 003779 576 SSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 607 (796)
Q Consensus 576 ssi~kER~~l~stIdaLQEEKklLqSKLR~as 607 (796)
..+--++..+...|.-||+..+.+...++++-
T Consensus 619 ~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~ 650 (1317)
T KOG0612|consen 619 TEISEIIAELKEEISSLEETLKAGKKELLKVE 650 (1317)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHH
Confidence 88888888877777777766655555555443
No 47
>PRK09039 hypothetical protein; Validated
Probab=96.48 E-value=0.19 Score=54.32 Aligned_cols=109 Identities=14% Similarity=0.189 Sum_probs=52.0
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003779 435 STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES 514 (796)
Q Consensus 435 s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~ 514 (796)
-+..+.+.+.|+..|.+|++ =++|. +.-...|-.+-..|..+|..-...-..|+...+.+......-...+..
T Consensus 48 i~~~~~eL~~L~~qIa~L~e-~L~le------~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~ 120 (343)
T PRK09039 48 ISGKDSALDRLNSQIAELAD-LLSLE------RQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGE 120 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHH-HHHHH------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHH
Confidence 35567777777777777542 12222 122233333334444444422222222222222111100011122333
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 515 FRNEYANVRLECNAADERAKILASEVIGLEEKALRL 550 (796)
Q Consensus 515 l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqL 550 (796)
+..+.++.+...+++.-+...|.+|+..|+.++-.+
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~l 156 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAAL 156 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777776666665544
No 48
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.48 E-value=0.0007 Score=77.96 Aligned_cols=162 Identities=28% Similarity=0.391 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh----
Q 003779 444 ALEQHIEDLTQEKFALQRSLEASRALSES----LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF---- 515 (796)
Q Consensus 444 aLqqhIeDLT~EKfaLqR~L~~s~~l~Es----La~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l---- 515 (796)
-|++.|.+|.+||-.|+-.+...+.-..+ ..+.+..+..+++.-...+.+|++++++++..+.-+...++.+
T Consensus 197 el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei 276 (713)
T PF05622_consen 197 ELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEI 276 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888887666544433222 2244555666777777777777777766655443333333332
Q ss_pred --------------------HHHHHHHHHhhhHHHH------H-------HHHHHHHHHHHHHHHHHHHhHhhhhHHHhh
Q 003779 516 --------------------RNEYANVRLECNAADE------R-------AKILASEVIGLEEKALRLRSNELKLERQLE 562 (796)
Q Consensus 516 --------------------~aErDaAq~E~naA~E------R-------aK~LAaEVV~LEEk~lqLRS~eLKleKElE 562 (796)
+-|+|..+..+..+.- + ...|-.+|..|+++..-+.-..+.++.++.
T Consensus 277 ~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~ 356 (713)
T PF05622_consen 277 DELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELK 356 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333332222111 0 011223444455544444444555566665
Q ss_pred h---hHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 003779 563 N---SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 605 (796)
Q Consensus 563 ~---l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~ 605 (796)
+ ++..+..|++++.-+..++......++.|+.|.+.|+.++..
T Consensus 357 ~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~ 402 (713)
T PF05622_consen 357 KARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEA 402 (713)
T ss_dssp ----------------------------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 556677777777777777777777777777777777777664
No 49
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.36 E-value=0.14 Score=55.54 Aligned_cols=141 Identities=17% Similarity=0.261 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Q 003779 455 EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 534 (796)
Q Consensus 455 EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK 534 (796)
++-.|..-|..+++-+..|..|...|..++++-.+-+.-|+..+.+++-... ......+..|+......+.+|.++.+
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~--~~~~~~~~~ere~lV~qLEk~~~q~~ 143 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDE--GIGARHFPHEREDLVEQLEKLREQIE 143 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhc--cccccccchHHHHHHHHHHHHHHHHH
Confidence 5666777788888888888888888888887766666666666655544332 22333445899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhh--------------hHHHHHHHHHHHHHHHH
Q 003779 535 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ--------------DFQSTIEALQEEKKMMQ 600 (796)
Q Consensus 535 ~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~--------------~l~stIdaLQEEKklLq 600 (796)
.|+.++..+-++.. +|+.+++ .+++...++..++.-+-.... -++.-|..+|||+.++.
T Consensus 144 qLe~d~qs~lDEke-----El~~ERD--~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k 216 (319)
T PF09789_consen 144 QLERDLQSLLDEKE-----ELVTERD--AYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLK 216 (319)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHH--HHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888765 4455555 566777777777665544322 23344555566665555
Q ss_pred HHHH
Q 003779 601 SKLR 604 (796)
Q Consensus 601 SKLR 604 (796)
+.+-
T Consensus 217 ~~i~ 220 (319)
T PF09789_consen 217 QTIN 220 (319)
T ss_pred HHHH
Confidence 5443
No 50
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.24 E-value=0.13 Score=57.34 Aligned_cols=104 Identities=17% Similarity=0.299 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHH
Q 003779 490 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 569 (796)
Q Consensus 490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~ 569 (796)
++..+..+++.++.|+..-.-+...+..||.+++.|+.++.+ |-...+++...+|-+-+|+..++..+...-.
T Consensus 75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~-------e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q 147 (499)
T COG4372 75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQ-------EREAVRQELAAARQNLAKAQQELARLTKQAQ 147 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888888777777778888888888888887765 4444556666777788888888888877777
Q ss_pred HHHHHHHhHHHhhhhHHHHHHHHHHHHHHHH
Q 003779 570 SYKKKISSLEKERQDFQSTIEALQEEKKMMQ 600 (796)
Q Consensus 570 S~~~q~ssi~kER~~l~stIdaLQEEKklLq 600 (796)
.+..++.-+..+|.+++-..+.||-+.|.||
T Consensus 148 ~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 148 DLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888888888888888887777
No 51
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.23 E-value=5.1 Score=49.87 Aligned_cols=56 Identities=18% Similarity=0.199 Sum_probs=33.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHHHH
Q 003779 684 RMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLT 739 (796)
Q Consensus 684 R~IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELlt 739 (796)
..++.|..-|..+..+.+++=..|.........++..-..+..+++-..+.|+-+.
T Consensus 607 ~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 662 (1201)
T PF12128_consen 607 ERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLK 662 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34556777777777666666666666666666666655555555555554444443
No 52
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=96.21 E-value=0.24 Score=48.01 Aligned_cols=66 Identities=26% Similarity=0.396 Sum_probs=49.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 486 QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 551 (796)
Q Consensus 486 qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLR 551 (796)
.....+.++..++.++++.+......+..++.++...+.......++.+.+..++..+++++.+++
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456667777777777777777778888888877777777777788888888888888877776
No 53
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.19 E-value=1.8 Score=44.65 Aligned_cols=126 Identities=21% Similarity=0.286 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 003779 442 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYN---QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE 518 (796)
Q Consensus 442 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yN---qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aE 518 (796)
++-|+.-=..|+.|=-.|+|.++..-+.+..|+.|+..|-..+= +--.....|++++|.|+.. +..+-++
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~-------~~~lEE~ 82 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTL-------AKSLEEE 82 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 44566666667788888999999999999999999988876553 2223334556666666553 2333444
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHH
Q 003779 519 YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKK 574 (796)
Q Consensus 519 rDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q 574 (796)
+....-.|-....-.+.|-++|..|+++-.++-...=++.+..+.|..+...+..+
T Consensus 83 ~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Q 138 (193)
T PF14662_consen 83 NRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQ 138 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHH
Confidence 44444444444444555666666666655555444444444444444444444443
No 54
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.15 E-value=0.65 Score=57.02 Aligned_cols=166 Identities=23% Similarity=0.336 Sum_probs=100.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779 438 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE-----NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 512 (796)
Q Consensus 438 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~E-----NsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l 512 (796)
+..+...|+.+|+|+ +||+.-.+.++--.+.-++|-++ .=...+.||.|...+.-.+..+..|++.+.-+...+
T Consensus 233 ~~e~i~~l~k~i~e~-~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~ 311 (1074)
T KOG0250|consen 233 KEEEIKNLKKKIKEE-EEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKI 311 (1074)
T ss_pred HHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999887 56776555555444444444433 234567888888777777766666666666555544
Q ss_pred hhh--------------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-------HHhHhhhhHHHhhhhHHH----
Q 003779 513 ESF--------------RNEYANVRLECNAADERAKILASEVIGLEEKALR-------LRSNELKLERQLENSQSE---- 567 (796)
Q Consensus 513 e~l--------------~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lq-------LRS~eLKleKElE~l~~E---- 567 (796)
+.+ +.|-++---||..|.+..+.+..|+..+++++.. +++.-=.++|++..++.+
T Consensus 312 ~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~ 391 (1074)
T KOG0250|consen 312 EEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNE 391 (1074)
T ss_pred HHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 443 4566666677788888888888888777766543 333323334444444433
Q ss_pred ----HHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 568 ----ISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 568 ----r~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 604 (796)
+...+.++.-|.+|.-.++..+..|.+|...++.+++
T Consensus 392 ~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~ 432 (1074)
T KOG0250|consen 392 LGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAK 432 (1074)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555555555
No 55
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.14 E-value=0.6 Score=55.19 Aligned_cols=129 Identities=22% Similarity=0.312 Sum_probs=66.0
Q ss_pred HHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHhh-hhHHHHHH--------HHH---------hhhH
Q 003779 470 SESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV---QLVELE-SFRNEYAN--------VRL---------ECNA 528 (796)
Q Consensus 470 ~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~a---Q~~~le-~l~aErDa--------Aq~---------E~na 528 (796)
.++|-.||+.|-.+++.....-.+-|.-|..|++.++. ++..+| .|.+|+-+ |+- ||.+
T Consensus 462 L~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e 541 (697)
T PF09726_consen 462 LSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAE 541 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHH
Confidence 45566677777777766555555544444444433332 222222 33444433 222 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 529 ADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 529 A~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 604 (796)
.+-.-+-.||.++.+||.+--..+-++-.+..|+..++.....-.+|-..|.+.|-+|||+-.+|+.-|.
T Consensus 542 ------~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLs 611 (697)
T PF09726_consen 542 ------SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLS 611 (697)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2333344555666666543222233333344444333332122456777888889999998888876654
No 56
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.13 E-value=0.069 Score=52.90 Aligned_cols=116 Identities=22% Similarity=0.282 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003779 440 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 519 (796)
Q Consensus 440 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 519 (796)
.-.+.|++-+.++-..|-.++--|-....-.+.|-.+......+-+.....+..|+..+..|..+|+.....++.+..|+
T Consensus 74 ~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~ 153 (194)
T PF08614_consen 74 QKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDEL 153 (194)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555667777766766667777777777778888888889999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 003779 520 ANVRLECNAADERAKILASEVIGLEEKALRLRSNEL 555 (796)
Q Consensus 520 DaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eL 555 (796)
.+.+.+++.+.++.+.|..|=..|=+|.++.+..+-
T Consensus 154 ~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eA 189 (194)
T PF08614_consen 154 QALQLQLNMLEEKLRKLEEENRELVERWMQRKAQEA 189 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999997765543
No 57
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=96.13 E-value=0.085 Score=56.39 Aligned_cols=115 Identities=20% Similarity=0.292 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhH------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhh
Q 003779 490 VVNQLKSEMEKLQEEIKVQLVELESFR------NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN 563 (796)
Q Consensus 490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~------aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~ 563 (796)
.+.+|+.++++.+.|.+.+..-|..+. .+.+....+..+....-+.|..|+..||.+..++..+.-+++++++.
T Consensus 10 l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~ 89 (314)
T PF04111_consen 10 LLEQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEE 89 (314)
T ss_dssp --------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888888888777776665 33444444555444445555555555555555555444444555555
Q ss_pred hHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 564 SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 564 l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 604 (796)
+..+...+-+.+.....+..+++.+.+.|......++..|.
T Consensus 90 l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~ 130 (314)
T PF04111_consen 90 LDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLD 130 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444455444444444444444444444444444444333
No 58
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=96.12 E-value=0.76 Score=52.40 Aligned_cols=127 Identities=13% Similarity=0.239 Sum_probs=84.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHH----HHHHHHHHHHHHH
Q 003779 467 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAA----DERAKILASEVIG 542 (796)
Q Consensus 467 ~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA----~ERaK~LAaEVV~ 542 (796)
+.+.+.|+.....+. ++++......++..++.++++++..+...+..+.+..++.+....+- .+--+.|..|-..
T Consensus 39 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~ 117 (475)
T PRK10361 39 EEMVAELSAAKQQIT-QSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFEN 117 (475)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456666666655 55666666666666677777666666666666655544443333222 2222357778888
Q ss_pred HHHHHHHHHhHhhhhHHH------hhhhHHHHHHHHHHHHhHH----HhhhhHHHHHHHHHH
Q 003779 543 LEEKALRLRSNELKLERQ------LENSQSEISSYKKKISSLE----KERQDFQSTIEALQE 594 (796)
Q Consensus 543 LEEk~lqLRS~eLKleKE------lE~l~~Er~S~~~q~ssi~----kER~~l~stIdaLQE 594 (796)
|-.++++-++..+..... |.=+++.+..+++++..+. ++|..|...|..|++
T Consensus 118 LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~ 179 (475)
T PRK10361 118 LANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQ 179 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999998888875444 3448899999999999877 457788888877765
No 59
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=96.05 E-value=0.087 Score=56.31 Aligned_cols=126 Identities=24% Similarity=0.347 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003779 442 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 521 (796)
Q Consensus 442 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDa 521 (796)
+..|+++++++..|+-.+++-|.+-+ .=......+.++..+++.|++|...-..+|+.+..|++.
T Consensus 11 ~~~l~~~~~~~~~E~~~Y~~fL~~l~---------------~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~ 75 (314)
T PF04111_consen 11 LEQLDKQLEQAEKERDTYQEFLKKLE---------------EESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREE 75 (314)
T ss_dssp ----------------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999998776 000112334556666666666554444444444444443
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 003779 522 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS 601 (796)
Q Consensus 522 Aq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqS 601 (796)
|.+|...||++..++. ++-+++-.+...+..++.....||+++..-++.++.+..
T Consensus 76 --------------l~~el~~le~e~~~l~-------~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~---- 130 (314)
T PF04111_consen 76 --------------LDQELEELEEELEELD-------EEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLD---- 130 (314)
T ss_dssp --------------HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred --------------HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3334444444444332 222244445555666666666666666666666666654
Q ss_pred HHHhhc
Q 003779 602 KLRKAS 607 (796)
Q Consensus 602 KLR~as 607 (796)
|||++.
T Consensus 131 ~L~ktN 136 (314)
T PF04111_consen 131 RLRKTN 136 (314)
T ss_dssp CHHT--
T ss_pred HHHhcC
Confidence 455443
No 60
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.04 E-value=0.027 Score=55.73 Aligned_cols=131 Identities=24% Similarity=0.298 Sum_probs=36.8
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHH----------------------HHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Q 003779 477 NSSLTDSYNQQRSVVNQLKSEMEKLQEEI----------------------KVQLVELESFRNEYANVRLECNAADERAK 534 (796)
Q Consensus 477 NsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei----------------------~aQ~~~le~l~aErDaAq~E~naA~ERaK 534 (796)
|..|...||+....+..|+..-..|+.+. ..-...+..+..|...++..+..-..|..
T Consensus 19 ~~~li~ay~~L~d~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~ 98 (194)
T PF08614_consen 19 FAELIDAYNRLADRTSLLKAENEQLQPEAESLPSSSSSSPSESGSVSSAQISSLEQKLAKLQEELAELYRSKGELAQQLV 98 (194)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45677777777777777777766666531 11122334455666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 003779 535 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 607 (796)
Q Consensus 535 ~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~as 607 (796)
.+-.++..|+.++......--.+++++..+..++.....++....+-=+.|+.++.+||-+..+++.|++++.
T Consensus 99 ~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 99 ELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666555554444444555555566666666666665555556677777777777777777777543
No 61
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.00 E-value=5.2 Score=47.95 Aligned_cols=122 Identities=22% Similarity=0.370 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHH
Q 003779 459 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILAS 538 (796)
Q Consensus 459 LqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAa 538 (796)
|+-.|.+.+......-.||+-|....++.+.....|.-+..+|+.||+-+-..=.-+-.+| . .|..
T Consensus 39 l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dy-------s-------elEe 104 (717)
T PF09730_consen 39 LENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDY-------S-------ELEE 104 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------H-------HHHH
Confidence 3444555555555555666666665555555555555555555555444333222222222 2 2556
Q ss_pred HHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHH-------HHHhHHHhhh----hHHHHHHHHHHHHHH
Q 003779 539 EVIGLEEKALRLRSNELKLERQLENSQSEISSYKK-------KISSLEKERQ----DFQSTIEALQEEKKM 598 (796)
Q Consensus 539 EVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~-------q~ssi~kER~----~l~stIdaLQEEKkl 598 (796)
|-|.|+..|--||++++ |.|++++|+.+..- ++.-+.+-|. +|.-.+++||.|...
T Consensus 105 ENislQKqvs~Lk~sQv----efE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReq 171 (717)
T PF09730_consen 105 ENISLQKQVSVLKQSQV----EFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQ 171 (717)
T ss_pred HHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777778888888888 45566666665554 4444444343 577788999988754
No 62
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.99 E-value=1.1 Score=55.80 Aligned_cols=131 Identities=11% Similarity=0.122 Sum_probs=83.9
Q ss_pred HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 003779 475 AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE 554 (796)
Q Consensus 475 ~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~e 554 (796)
.|-.+.-...+.-+.++.+|...||.|+.++..+-.+-+.+..+.+.|+.++..|..-++.|+......+.-+.+-..-.
T Consensus 1605 ~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~ 1684 (1758)
T KOG0994|consen 1605 EETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGS 1684 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33444455667777789999999999999988888888888888899999998888888877765544333332222233
Q ss_pred hhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHH-------HHHHHHHHHHHHHHHHHHh
Q 003779 555 LKLERQLENSQSEISSYKKKISSLEKERQDFQ-------STIEALQEEKKMMQSKLRK 605 (796)
Q Consensus 555 LKleKElE~l~~Er~S~~~q~ssi~kER~~l~-------stIdaLQEEKklLqSKLR~ 605 (796)
+-++.-+|.|+.|.+.+-.+...-+..=++|+ --|+.++.|+.-|..+|+.
T Consensus 1685 ~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~ 1742 (1758)
T KOG0994|consen 1685 QAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVES 1742 (1758)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Confidence 44444555666665555544443333333333 2345556666667777764
No 63
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.97 E-value=1.6 Score=48.18 Aligned_cols=74 Identities=15% Similarity=0.210 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhHhhhhHHHhhhh------------HHHHHHHHHHHH-hHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 003779 539 EVIGLEEKALRLRSNELKLERQLENS------------QSEISSYKKKIS-SLEKERQDFQSTIEALQEEKKMMQSKLRK 605 (796)
Q Consensus 539 EVV~LEEk~lqLRS~eLKleKElE~l------------~~Er~S~~~q~s-si~kER~~l~stIdaLQEEKklLqSKLR~ 605 (796)
++..|+.++.+++.+--.++.++.++ ...+.++..+.. .+..+...++..++.++++++.++.+|.+
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~ 316 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQK 316 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444444444444444444444443 333333333333 45555556666666666666666666653
Q ss_pred ----hccCCCc
Q 003779 606 ----ASGSGKS 612 (796)
Q Consensus 606 ----asa~gKa 612 (796)
++-.|.+
T Consensus 317 ~~I~AP~dG~V 327 (457)
T TIGR01000 317 GVIKAPEDGVL 327 (457)
T ss_pred CEEECCCCeEE
Confidence 4555554
No 64
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.95 E-value=1.2 Score=45.13 Aligned_cols=104 Identities=17% Similarity=0.284 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HhHhhhhHHHhhhhHH
Q 003779 490 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL---RSNELKLERQLENSQS 566 (796)
Q Consensus 490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqL---RS~eLKleKElE~l~~ 566 (796)
.+..||++|+.++.......-.+..+..|--...--+..|.+....|..++...+.....| ++.--.+++++..++-
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~ 107 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKW 107 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455554444443333333344444433333344444444444444444433333322 2222233556666666
Q ss_pred HHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 003779 567 EISSYKKKISSLEKERQDFQSTIEALQ 593 (796)
Q Consensus 567 Er~S~~~q~ssi~kER~~l~stIdaLQ 593 (796)
|-+....++..++.||+.|...++..-
T Consensus 108 e~evL~qr~~kle~ErdeL~~kf~~~i 134 (201)
T PF13851_consen 108 EHEVLEQRFEKLEQERDELYRKFESAI 134 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666665554443
No 65
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.93 E-value=2.4 Score=43.45 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003779 442 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ 486 (796)
Q Consensus 442 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNq 486 (796)
++.|++-||+.-..--.++..|..+..-++.+-.|..+|.++...
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~ 47 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQL 47 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777777777777777777766543
No 66
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.92 E-value=5.7 Score=51.64 Aligned_cols=52 Identities=27% Similarity=0.383 Sum_probs=30.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHH
Q 003779 521 NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYK 572 (796)
Q Consensus 521 aAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~ 572 (796)
.+-.++.+|.+..+.|-+||..|-.+-.=++..+-++..+++.|..|..+..
T Consensus 728 ~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~ 779 (1822)
T KOG4674|consen 728 TLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQ 779 (1822)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667777777777777665555455555555555555555544443
No 67
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.91 E-value=2.9 Score=50.34 Aligned_cols=70 Identities=23% Similarity=0.285 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHH
Q 003779 463 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER 532 (796)
Q Consensus 463 L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ER 532 (796)
|.+.+.=++-|-+++++|.-++=.--..+++.+..++.+++|..-+..+++-++..+|....+.+....+
T Consensus 331 l~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~k 400 (775)
T PF10174_consen 331 LRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKK 400 (775)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556666666666665555555555555555555555555555555555555555444444333
No 68
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.87 E-value=1.6 Score=47.15 Aligned_cols=9 Identities=11% Similarity=0.342 Sum_probs=5.9
Q ss_pred ccccccCCc
Q 003779 430 QHGFYSTKH 438 (796)
Q Consensus 430 ~~~F~s~~~ 438 (796)
|.+||+.+.
T Consensus 101 F~EY~~a~~ 109 (312)
T smart00787 101 FKEYFSASP 109 (312)
T ss_pred HHHHHcCCH
Confidence 777776543
No 69
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.85 E-value=2.1 Score=53.27 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=36.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHHHHHHHhh
Q 003779 686 IHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMA 744 (796)
Q Consensus 686 IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELltsq~ma 744 (796)
++.+-.-|..+..|...+...|.........|+.+-+.++.|+++.++.|.-..++.-+
T Consensus 544 l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kV 602 (1293)
T KOG0996|consen 544 LDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKV 602 (1293)
T ss_pred HHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 33334444444446666666666666666666777777777777777766665555443
No 70
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=95.85 E-value=1.1 Score=45.26 Aligned_cols=134 Identities=19% Similarity=0.260 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH------------HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q 003779 459 LQRSLEASRALSESLAAENSSLTDSYN------------QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC 526 (796)
Q Consensus 459 LqR~L~~s~~l~EsLa~ENsaLt~~yN------------qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~ 526 (796)
|.+++..-..-++.+|..+..+..... .+......+...+++++...+.+...|+..+..|+++-.+.
T Consensus 58 l~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~ 137 (236)
T cd07651 58 LKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKI 137 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344444444444444444444444443 23334455566777888888888889999999999988888
Q ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH--HHHHH
Q 003779 527 NAADERAKI-LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ--EEKKM 598 (796)
Q Consensus 527 naA~ERaK~-LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ--EEKkl 598 (796)
+.+..+... ...|+.-++.++.+....--+++.+.+.+..+...++..+. ..+....+.|| ||.+.
T Consensus 138 e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~------~~~~~~~~~~Q~lEe~Ri 206 (236)
T cd07651 138 NSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWN------REWKAALDDFQDLEEERI 206 (236)
T ss_pred HHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 887776433 34788899999999888888888888888888888888776 45677888888 44443
No 71
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=95.84 E-value=0.079 Score=46.07 Aligned_cols=65 Identities=20% Similarity=0.251 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 487 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 551 (796)
Q Consensus 487 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLR 551 (796)
....+..|+..+.++.+.+.++..++..+..|||.+...+..|-+.+..|.+|+..|..++-..|
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34678899999999999999999999999999999999999999999999999999999865554
No 72
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.84 E-value=0.99 Score=55.34 Aligned_cols=167 Identities=21% Similarity=0.290 Sum_probs=93.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 003779 437 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 516 (796)
Q Consensus 437 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~ 516 (796)
.-.++...+..-|+++-++=-..+|++-..++-..+|. ..+.+.++.++..+++|+.+++.+.+.++++...++.-.
T Consensus 738 ~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE---~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~ 814 (1174)
T KOG0933|consen 738 KLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLE---KKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRE 814 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566665555556666666655555553 356777888888888888888777777777766666666
Q ss_pred HHHHHHHHhhhHHHHHHHHHH--------------HHHHHHHHHHHHHHhHhhhhHHHhhhhHH--------------HH
Q 003779 517 NEYANVRLECNAADERAKILA--------------SEVIGLEEKALRLRSNELKLERQLENSQS--------------EI 568 (796)
Q Consensus 517 aErDaAq~E~naA~ERaK~LA--------------aEVV~LEEk~lqLRS~eLKleKElE~l~~--------------Er 568 (796)
-||.+.++|+.+-..--+.+. .|+..|+.++...-.+.-|++.++...+. +.
T Consensus 815 ~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~ 894 (1174)
T KOG0933|consen 815 NEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQ 894 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHH
Confidence 666666666655444333444 44444443333333333333333333222 22
Q ss_pred HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 003779 569 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 606 (796)
Q Consensus 569 ~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~a 606 (796)
+.|.++.+..+.+|+.+.-.+++++.|++.+-.+++..
T Consensus 895 e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l 932 (1174)
T KOG0933|consen 895 EKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKL 932 (1174)
T ss_pred HHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHH
Confidence 23333344444555555566666666665555555543
No 73
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.78 E-value=1.3 Score=47.27 Aligned_cols=9 Identities=11% Similarity=0.431 Sum_probs=5.4
Q ss_pred ccccccCCc
Q 003779 430 QHGFYSTKH 438 (796)
Q Consensus 430 ~~~F~s~~~ 438 (796)
|.+||+.+.
T Consensus 106 f~EY~~a~~ 114 (325)
T PF08317_consen 106 FREYYTADP 114 (325)
T ss_pred HHHHHcCCH
Confidence 666666643
No 74
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.78 E-value=1.5 Score=55.22 Aligned_cols=95 Identities=16% Similarity=0.235 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003779 440 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 519 (796)
Q Consensus 440 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 519 (796)
+++..++.+|++|.++.-+|.+=+..-+..+.-... ..+..|-.....+.+++.+++.++.++..-...++.+..++
T Consensus 230 ~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (1353)
T TIGR02680 230 EQLDEYRDELERLEALERALRNFLQRYRRYARTMLR---RRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDART 306 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888887777777666666653322 23455666666666666666666666666666666666666
Q ss_pred HHHHHhhhHHHHHHHHHH
Q 003779 520 ANVRLECNAADERAKILA 537 (796)
Q Consensus 520 DaAq~E~naA~ERaK~LA 537 (796)
+.+..+...++++...|.
T Consensus 307 ~~le~~~~~l~~~~~~l~ 324 (1353)
T TIGR02680 307 EALEREADALRTRLEALQ 324 (1353)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 666666666666555554
No 75
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.75 E-value=1.3 Score=42.86 Aligned_cols=127 Identities=19% Similarity=0.297 Sum_probs=98.3
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHHH
Q 003779 471 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE---VIGLEEKA 547 (796)
Q Consensus 471 EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaE---VV~LEEk~ 547 (796)
+.|=.|.+.+.+++.+-...+.+|.....+++++|..=.-.+..+-.|.|.++..+..|.+.+-....- +..|..+|
T Consensus 3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rri 82 (143)
T PF12718_consen 3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRI 82 (143)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhH
Confidence 567778899999999999999999999999999999999999999999999988888887776665543 33455554
Q ss_pred HHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 548 LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 548 lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 604 (796)
..| +.+|+....-+..+..++.-+...-+++..-+.+|..+..-+..|+-
T Consensus 83 q~L-------Eeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~e 132 (143)
T PF12718_consen 83 QLL-------EEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYE 132 (143)
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH
Confidence 433 77777777777777777777777777777777777766666655554
No 76
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.72 E-value=4.7 Score=48.29 Aligned_cols=243 Identities=22% Similarity=0.250 Sum_probs=120.8
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 003779 476 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE--CNAADERAKILASEVIGLEEKALRLRSN 553 (796)
Q Consensus 476 ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E--~naA~ERaK~LAaEVV~LEEk~lqLRS~ 553 (796)
+|+.|.+.|-| .|.+|.+++--+-.|..+-+-...+++.|.+++... +-+-+|....|.+|=..|-.+.+.- |.
T Consensus 399 ~~ssl~~e~~Q---Rva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~q-s~ 474 (961)
T KOG4673|consen 399 EVSSLREEYHQ---RVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQ-SA 474 (961)
T ss_pred cccchHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHH-HH
Confidence 34555555544 467777777777777777777777788887777654 4456667777777777776665522 22
Q ss_pred hhhh----HHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCCCccccccccccc
Q 003779 554 ELKL----ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTST 629 (796)
Q Consensus 554 eLKl----eKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTsT 629 (796)
.+|- .|+.+.+. ...-.++..+.+|-..|...++.--|=-|.++..+.++.+.-+-.. .....++.| .
T Consensus 475 iIkKLRAk~ke~etl~---~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~-~~~~~sr~~----~ 546 (961)
T KOG4673|consen 475 IIKKLRAKIKEAETLE---EKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQK-DYYSNSRAL----A 546 (961)
T ss_pred HHHHHHHHhhhhhHHH---HHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHH----H
Confidence 2221 01111111 1112234444444444444443332222333333333222111100 000001111 1
Q ss_pred ccccccccccccCCccccccCCCccccccCCCCCCcCcccccccccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 003779 630 EDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSS 709 (796)
Q Consensus 630 dDLai~d~~~esSnqE~ldsas~qe~~vs~~pllpe~G~~af~~~~~~Ip~DQlR~IdSInaLisELa~EReravsaLa~ 709 (796)
++| ...-.+-+.++|.+ . |+....-+ +--|.+|..++ .|..-+..=|..|...=..
T Consensus 547 ~~l----e~~~~a~qat~d~a----------~-----~Dlqk~nr---lkQdear~~~~--~lvqqv~dLR~~L~~~Eq~ 602 (961)
T KOG4673|consen 547 AAL----EAQALAEQATNDEA----------R-----SDLQKENR---LKQDEARERES--MLVQQVEDLRQTLSKKEQQ 602 (961)
T ss_pred HHH----HHHHHHHHHhhhhh----------h-----hhHHHHhh---hhhhHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 122 00000111111222 1 11111111 11344444443 4555555556666666666
Q ss_pred HHHhhHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhhhccccCCCC
Q 003779 710 ELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPD 754 (796)
Q Consensus 710 esr~~~dLk~lN~ELsRKLE~qtQRLELltsq~ma~e~~~a~~~d 754 (796)
+-++-+-|+.++-+|.|+|++...|-|-++.+-=+.--++.|+|.
T Consensus 603 aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE 647 (961)
T KOG4673|consen 603 AARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIE 647 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHH
Confidence 677888999999999999999999999888775544444555553
No 77
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.70 E-value=0.83 Score=52.91 Aligned_cols=46 Identities=24% Similarity=0.292 Sum_probs=31.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHH
Q 003779 686 IHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQ 731 (796)
Q Consensus 686 IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~q 731 (796)
..-|.+|=..|..++..--+.|.+....+.+|+++=..|+-+|+.+
T Consensus 323 ~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~L 368 (546)
T KOG0977|consen 323 EKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKL 368 (546)
T ss_pred HHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555566667777777777777777777777777777666654
No 78
>PRK11281 hypothetical protein; Provisional
Probab=95.60 E-value=0.34 Score=59.86 Aligned_cols=51 Identities=14% Similarity=0.170 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHH
Q 003779 488 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILAS 538 (796)
Q Consensus 488 ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAa 538 (796)
...+.++..++.+.|+++...-..+......-++||....+|..|...+..
T Consensus 127 Eq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~ 177 (1113)
T PRK11281 127 ESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRN 177 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444555555566666666666554443
No 79
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.57 E-value=2.1 Score=43.78 Aligned_cols=83 Identities=22% Similarity=0.326 Sum_probs=38.1
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-------hHhhhhHHHhhhhHHHHHHHHHHH-------HhHHHhhhhHHH
Q 003779 522 VRLECNAADERAKILASEVIGLEEKALRLR-------SNELKLERQLENSQSEISSYKKKI-------SSLEKERQDFQS 587 (796)
Q Consensus 522 Aq~E~naA~ERaK~LAaEVV~LEEk~lqLR-------S~eLKleKElE~l~~Er~S~~~q~-------ssi~kER~~l~s 587 (796)
...++..|.+|+..+...+..||+++..+. ..+-++....+.+...+..+..++ ..++..=..|+.
T Consensus 125 ~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~ 204 (237)
T PF00261_consen 125 LEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEK 204 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555554432 222222222233333344444444 444444445555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003779 588 TIEALQEEKKMMQSKLR 604 (796)
Q Consensus 588 tIdaLQEEKklLqSKLR 604 (796)
.|+.|.+++.-...+.+
T Consensus 205 ~id~le~eL~~~k~~~~ 221 (237)
T PF00261_consen 205 EIDRLEDELEKEKEKYK 221 (237)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555544444443
No 80
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.57 E-value=1.8 Score=53.79 Aligned_cols=148 Identities=20% Similarity=0.282 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003779 442 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 521 (796)
Q Consensus 442 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDa 521 (796)
..-|+.-||..-.+++.+.-+++.++..-+.+-.|++.|...-+.-...+. +.+..|+++-.+-..+...+..|+.-
T Consensus 414 ~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~---e~~~~l~~~t~~~~~e~~~~ekel~~ 490 (1293)
T KOG0996|consen 414 IKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD---EILDSLKQETEGIREEIEKLEKELMP 490 (1293)
T ss_pred HHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 344556677777778888888888888777777777777766555443332 22223333333333333344444444
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHH-------HHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHH
Q 003779 522 VRLECNAADERAKILASEVIGLE-------EKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 592 (796)
Q Consensus 522 Aq~E~naA~ERaK~LAaEVV~LE-------Ek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaL 592 (796)
.....+.|..+.+....|..-|. .++..+...-+.++..+++-+.+++++...+.+..-|+.++.+.+..|
T Consensus 491 ~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~ 568 (1293)
T KOG0996|consen 491 LLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKL 568 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHH
Confidence 44444444444444444443333 233334444444444444444444444444444444444444433333
No 81
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.52 E-value=1.5 Score=50.20 Aligned_cols=160 Identities=14% Similarity=0.215 Sum_probs=103.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 003779 437 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 516 (796)
Q Consensus 437 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~ 516 (796)
+-..++..|++.|.+.-.-=-.| .|..+.+.++.+..+-+.|.+.+..-...-..+...+..+...+....-.+..+.
T Consensus 253 ~i~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~ 330 (569)
T PRK04778 253 DIEKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELK 330 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34778888888888733111111 3567777788888888888888877777777777778888888877777888888
Q ss_pred HHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 003779 517 NEYANVRLECN---AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 593 (796)
Q Consensus 517 aErDaAq~E~n---aA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ 593 (796)
.|.+...+.+. .-.++.+.+..++..|++++..+...--+.....+.+.++......++..+++++..+...|..|.
T Consensus 331 ~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lr 410 (569)
T PRK04778 331 EEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLR 410 (569)
T ss_pred HHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877732 235566667777777766666543332222333444555555556666666666666666666555
Q ss_pred HHHHH
Q 003779 594 EEKKM 598 (796)
Q Consensus 594 EEKkl 598 (796)
.+-..
T Consensus 411 k~E~e 415 (569)
T PRK04778 411 KDELE 415 (569)
T ss_pred HHHHH
Confidence 44333
No 82
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.51 E-value=0.83 Score=55.95 Aligned_cols=163 Identities=16% Similarity=0.231 Sum_probs=97.3
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003779 435 STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES 514 (796)
Q Consensus 435 s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~ 514 (796)
-+.+......|+..|+.+-+.=-+--+.+++.....+.|--|.++|.+-----...+.++...++-|..++..+.+.+..
T Consensus 782 ~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~ 861 (1174)
T KOG0933|consen 782 KANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDK 861 (1174)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556666666666655555566667777777777777777777655555566777777777888888888888888
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHH
Q 003779 515 FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 594 (796)
Q Consensus 515 l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQE 594 (796)
+..+.+.++.+.+.-...-+..--|+-++.-++-...+.--..+-+.+++.+|+.++.+.-....++=..|....+-+-+
T Consensus 862 ~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ 941 (1174)
T KOG0933|consen 862 VEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGD 941 (1174)
T ss_pred HHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhH
Confidence 88888888888777777777666666333333322222222222233344444444444444443333344444444444
Q ss_pred HHH
Q 003779 595 EKK 597 (796)
Q Consensus 595 EKk 597 (796)
||.
T Consensus 942 ek~ 944 (1174)
T KOG0933|consen 942 EKR 944 (1174)
T ss_pred HHH
Confidence 443
No 83
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.50 E-value=1.8 Score=55.89 Aligned_cols=257 Identities=20% Similarity=0.220 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 003779 443 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 522 (796)
Q Consensus 443 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaA 522 (796)
-.|+|-.++++.+.-.+.-.+...+.=-+++-.++..+...+=.-+..+.+|.+.+..++.+-..-.-.++..++|..+-
T Consensus 62 ~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l 141 (1822)
T KOG4674|consen 62 LRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEAL 141 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777666667777777788888877888888888888777755444444445555566666
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHH--------------HHHHHHHhHHHh----hhh
Q 003779 523 RLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS--------------SYKKKISSLEKE----RQD 584 (796)
Q Consensus 523 q~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~--------------S~~~q~ssi~kE----R~~ 584 (796)
+.+...-.++.+.+-.-+-.||.+..+..+..+-.+..++++..|.+ .+..+|..+..+ =.+
T Consensus 142 ~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~ 221 (1822)
T KOG4674|consen 142 ESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQ 221 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 65555555555555555555555555555555555544444444433 333444444333 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCccCCCCCcccccccccccccccccccccccCCccccccCCCccccccCCCCCC
Q 003779 585 FQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLP 664 (796)
Q Consensus 585 l~stIdaLQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTsTdDLai~d~~~esSnqE~ldsas~qe~~vs~~pllp 664 (796)
|...|..+++++.+++.+..-+...-+- +.+-..-...+|--.+++.+++ .+-
T Consensus 222 L~~~L~~~~~~~~~~q~~~~~l~q~~~e--------Ls~~ie~~~~~ls~~k~t~~s~----------------~~k--- 274 (1822)
T KOG4674|consen 222 LEEKLSDLKESLAELQEKNKSLKQQNEE--------LSKKIESLNLELSKLKDTAESS----------------EEK--- 274 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhHHH----------------HHH---
Confidence 5555555556666665555422110000 0000000111110011111111 001
Q ss_pred cCcccccccccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHH
Q 003779 665 ESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLE 736 (796)
Q Consensus 665 e~G~~af~~~~~~Ip~DQlR~IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLE 736 (796)
| .+=..-|-+|-+=-...|.++..+..++.++|....+-++++...++|..-.|++..|-|+
T Consensus 275 ------f----~~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~ 336 (1822)
T KOG4674|consen 275 ------F----EKELSTQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLS 336 (1822)
T ss_pred ------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 1 0111223355566667788888888888888888888888888888877666666666554
No 84
>PF13166 AAA_13: AAA domain
Probab=95.49 E-value=1.7 Score=49.75 Aligned_cols=119 Identities=23% Similarity=0.353 Sum_probs=55.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 484 YNQQRSVVNQLKSEMEKLQEEIKVQLVE-------------LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 550 (796)
Q Consensus 484 yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~-------------le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqL 550 (796)
+.+-...+.+++..++.+...+..-... +..+....+.+...+.+..+....+..+...|..++...
T Consensus 324 ~~~~~~~~~~l~~~l~~l~~~L~~K~~~~~~~~~~~~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~ 403 (712)
T PF13166_consen 324 KEELKSAIEALKEELEELKKALEKKIKNPSSPIELEEINEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLH 403 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555544443211 122233333333344444444555555555555555443
Q ss_pred HhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 551 RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 551 RS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 604 (796)
.-. +...+++.+..++..+.+++..+.++...+...+..++.+.+.|+.++.
T Consensus 404 ~~~--~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 455 (712)
T PF13166_consen 404 LIA--KLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLK 455 (712)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222 2223333444455555555555555555555555555555554544443
No 85
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=95.45 E-value=2 Score=43.46 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 441 DFAALEQHIEDLTQEKFALQRSLEA 465 (796)
Q Consensus 441 ~faaLqqhIeDLT~EKfaLqR~L~~ 465 (796)
.+..++..|.++-.++-.|++.++.
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~ 45 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEE 45 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777776665554
No 86
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.42 E-value=2 Score=46.61 Aligned_cols=102 Identities=18% Similarity=0.284 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779 440 EDFAALEQHIEDLTQEKF-------ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 512 (796)
Q Consensus 440 ~~faaLqqhIeDLT~EKf-------aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l 512 (796)
..+.-||+.+|-|..||- +|.-+|++++.-++.--.|-.+|-+----.....+.|.....+|..++++-..-+
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv 97 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQV 97 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHH
Confidence 456778888898988874 4566777777777666655555554433333344445555555555554444444
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 003779 513 ESFRNEYANVRLECNAADERAKILASEVIGLEEKAL 548 (796)
Q Consensus 513 e~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~l 548 (796)
.-+-.-. +.+..+...|..|+-.+..++-
T Consensus 98 ~~lEgQl-------~s~Kkqie~Leqelkr~KsELE 126 (307)
T PF10481_consen 98 NFLEGQL-------NSCKKQIEKLEQELKRCKSELE 126 (307)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322 3334444455555554444444
No 87
>PF13514 AAA_27: AAA domain
Probab=95.41 E-value=1.3 Score=54.21 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHh
Q 003779 692 LISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQ 733 (796)
Q Consensus 692 LisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQ 733 (796)
-|..++.+..++.+.++....++..+...-..+..+|+.+.+
T Consensus 453 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 494 (1111)
T PF13514_consen 453 TVEAFRAEFEELERQLRRARDRLEELEEELARLEARLRRLAA 494 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555666666666666666666666665555555555544
No 88
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.38 E-value=1.4 Score=51.30 Aligned_cols=58 Identities=22% Similarity=0.172 Sum_probs=42.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHH-------HHHHHHhHHHHHHHHHh
Q 003779 686 IHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSR-------KLEHQTQRLELLTAQNM 743 (796)
Q Consensus 686 IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsR-------KLE~qtQRLELltsq~m 743 (796)
+++.+++|.|+...-..+-..|....+.|-..|+.+-|+.+ +||...+.|.|..=+.|
T Consensus 448 ~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m 512 (581)
T KOG0995|consen 448 FSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSM 512 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888888888888877777654 46777777666555554
No 89
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=95.38 E-value=1.8 Score=43.71 Aligned_cols=10 Identities=20% Similarity=0.112 Sum_probs=4.2
Q ss_pred ccccccccch
Q 003779 670 ALEGLAVNIP 679 (796)
Q Consensus 670 af~~~~~~Ip 679 (796)
.+.|+...|+
T Consensus 224 ~~~gs~s~i~ 233 (302)
T PF10186_consen 224 TPSGSRSTII 233 (302)
T ss_pred ccCccccchh
Confidence 3444444444
No 90
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.33 E-value=6.6 Score=47.85 Aligned_cols=150 Identities=27% Similarity=0.336 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 003779 446 EQHIEDLTQEKFALQRSLEASRALSESLAAENS-----SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 520 (796)
Q Consensus 446 qqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENs-----aLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD 520 (796)
|.-|.||-.||++|+-.|---+-+.++.-.|-+ .+|+.| +-.|..|.+++..++.+|..-...+-.+..|..
T Consensus 47 eniiqdlrserdalhe~lvdkaglneSviie~sk~vstqetriy---Rrdv~llEddlk~~~sQiriLQn~c~~lE~ekq 123 (1265)
T KOG0976|consen 47 ENIIQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIY---RRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQ 123 (1265)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999776555556666555543 245555 346677777777777777666666666666666
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHH----HHHHHhHHHhhhhHHHHHHHHHHHH
Q 003779 521 NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY----KKKISSLEKERQDFQSTIEALQEEK 596 (796)
Q Consensus 521 aAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~----~~q~ssi~kER~~l~stIdaLQEEK 596 (796)
+.|--...+.++.|.-.-|++.+-.++- |++++|..-.+||-+. ..+-..|..-+-+++..+..--+|+
T Consensus 124 ~lQ~ti~~~q~d~ke~etelE~~~srlh-------~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en 196 (1265)
T KOG0976|consen 124 KLQDTIQGAQDDKKENEIEIENLNSRLH-------KLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREK 196 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHH-------HHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHH
Confidence 6666666666666655555554444333 2344444433333222 2222333344444445555555566
Q ss_pred HHHHHHHHh
Q 003779 597 KMMQSKLRK 605 (796)
Q Consensus 597 klLqSKLR~ 605 (796)
+.+.-|+.+
T Consensus 197 ~~le~k~~k 205 (1265)
T KOG0976|consen 197 KALEEKLEK 205 (1265)
T ss_pred HHHHHHHHH
Confidence 655555553
No 91
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=95.31 E-value=1.4 Score=45.01 Aligned_cols=165 Identities=19% Similarity=0.245 Sum_probs=95.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003779 439 NEDFAALEQHIEDLTQEKFALQRSLEASRAL----SESLA-AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE 513 (796)
Q Consensus 439 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l----~EsLa-~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le 513 (796)
..+-+.|++.|++...+--.+++.|++-..- .+.++ .--+.|..+.++.-..+.+++..+-.+..++..+....+
T Consensus 37 ~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~ 116 (240)
T PF12795_consen 37 KKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPE 116 (240)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence 3455677788888888877777777765432 11111 012457777888888888888888888888888888888
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHH
Q 003779 514 SFRNEYANVRLECNAADERAKILASE--VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA 591 (796)
Q Consensus 514 ~l~aErDaAq~E~naA~ERaK~LAaE--VV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIda 591 (796)
.+......++....+++.+...+... ...-+.+...|....--+.-++.-+..|..+......++...|+-+...++.
T Consensus 117 ~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~ 196 (240)
T PF12795_consen 117 RAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQR 196 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887777777776653000 1111222222222222222333333444444444444555555555555555
Q ss_pred HHHHHHHHHHHH
Q 003779 592 LQEEKKMMQSKL 603 (796)
Q Consensus 592 LQEEKklLqSKL 603 (796)
++.+...||..|
T Consensus 197 l~~~l~~Lq~~l 208 (240)
T PF12795_consen 197 LQQQLQALQNLL 208 (240)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 92
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.28 E-value=1.3 Score=48.26 Aligned_cols=163 Identities=20% Similarity=0.291 Sum_probs=95.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH--
Q 003779 439 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR-- 516 (796)
Q Consensus 439 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~-- 516 (796)
-.|+.|+-.++++ -.|.|+=+-+|-+.|-..|..|+.++..-...++...+.|.+|+-|+..----|--+.
T Consensus 61 y~Didavt~lLeE-------kerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~ 133 (306)
T PF04849_consen 61 YNDIDAVTRLLEE-------KERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSND 133 (306)
T ss_pred hhhHHHHHHHHHH-------HhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 3566666666665 4688999999999999999999999999999999999999999888654333322222
Q ss_pred HHHHHHHHhh-------------------hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHH-----------hhhhHH
Q 003779 517 NEYANVRLEC-------------------NAADERAKILASEVIGLEEKALRLRSNELKLERQ-----------LENSQS 566 (796)
Q Consensus 517 aErDaAq~E~-------------------naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKE-----------lE~l~~ 566 (796)
.|-....-.+ ..-.++.|.|..|-..|.+++.+|+......+.+ +..++.
T Consensus 134 ~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~ 213 (306)
T PF04849_consen 134 DEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQ 213 (306)
T ss_pred hhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcch
Confidence 1111111111 2334455555555555555555555333322222 222222
Q ss_pred HHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 003779 567 EISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 608 (796)
Q Consensus 567 Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa 608 (796)
.+..+..++..-.-|=...+.+|-.|+.+.-.||.|+++...
T Consensus 214 qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~ 255 (306)
T PF04849_consen 214 QIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAA 255 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 223332222222222334456777777778888888886544
No 93
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.22 E-value=1.1 Score=49.31 Aligned_cols=34 Identities=18% Similarity=0.124 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 441 DFAALEQHIEDLTQEKFALQRSLEASRALSESLA 474 (796)
Q Consensus 441 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa 474 (796)
....+.+.|.++.++...++..+...++..+.|-
T Consensus 198 ~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~ 231 (498)
T TIGR03007 198 QEGDYYSEISEAQEELEAARLELNEAIAQRDALK 231 (498)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777666666555544443
No 94
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.16 E-value=5.1 Score=48.35 Aligned_cols=103 Identities=18% Similarity=0.219 Sum_probs=87.1
Q ss_pred HHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003779 470 SESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALR 549 (796)
Q Consensus 470 ~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lq 549 (796)
-..|.++..+++..++....-+.-||..+...+++..--...++.|+.+++.+...|++++.+.-.++.|.-.+..++..
T Consensus 303 ~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~ 382 (775)
T PF10174_consen 303 LEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIED 382 (775)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999998888887
Q ss_pred HHhHhhhhHHHhhhhHHHHHHHH
Q 003779 550 LRSNELKLERQLENSQSEISSYK 572 (796)
Q Consensus 550 LRS~eLKleKElE~l~~Er~S~~ 572 (796)
+|...=+.+.++..++..++.+.
T Consensus 383 l~d~~d~~e~ki~~Lq~kie~Le 405 (775)
T PF10174_consen 383 LRDMLDKKERKINVLQKKIENLE 405 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666666666665554444
No 95
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=95.13 E-value=2.3 Score=44.22 Aligned_cols=115 Identities=23% Similarity=0.272 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 003779 441 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 520 (796)
Q Consensus 441 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD 520 (796)
-+..|+|+|.|+-.+ |.+++.-+.++-+.--.+-++||+....+..++..-+ .+|..=..+.+
T Consensus 25 p~~~l~Q~ird~~~~-------l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~----------~Al~~g~E~LA 87 (225)
T COG1842 25 PEKMLEQAIRDMESE-------LAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAE----------LALQAGNEDLA 87 (225)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHCCCHHHH
Confidence 348999999998655 5555444444444555566677765555544443321 11111112222
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 003779 521 NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 578 (796)
Q Consensus 521 aAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi 578 (796)
.+|-++-+.|...+..++..+.+++....|+++.+..+...+..++.+...+
T Consensus 88 ------r~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 88 ------REALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL 139 (225)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666666666666655533
No 96
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=95.11 E-value=1 Score=46.88 Aligned_cols=108 Identities=24% Similarity=0.292 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHH
Q 003779 491 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISS 570 (796)
Q Consensus 491 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S 570 (796)
|.++++++++.++++..+.-...-|..+ +..|.+-+..|+.+...+++...+|+..-.+..++-+.|..++..
T Consensus 14 L~q~eee~~~a~~~L~e~e~~a~~Leek-------~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e 86 (246)
T PF00769_consen 14 LRQMEEEMRRAQEALEESEETAEELEEK-------LKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELRE 86 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555544443333332223222 344555556777777778888888887777777777777777777
Q ss_pred HHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 003779 571 YKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 605 (796)
Q Consensus 571 ~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~ 605 (796)
+..++..+..++..-..+.+.||.+...++..+.+
T Consensus 87 ~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ 121 (246)
T PF00769_consen 87 AEAEIARLEEESERKEEEAEELQEELEEAREDEEE 121 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777666665553
No 97
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.08 E-value=0.0059 Score=70.53 Aligned_cols=55 Identities=31% Similarity=0.362 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHHHHHH
Q 003779 687 HNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQ 741 (796)
Q Consensus 687 dSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELltsq 741 (796)
.....+|.+|+.|+..+..-+.........++..+..|.|++-..+.-.+.+-++
T Consensus 367 ~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~ 421 (722)
T PF05557_consen 367 RELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQ 421 (722)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556777777777766666666666666666666666555555555555444
No 98
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.99 E-value=2.4 Score=46.25 Aligned_cols=151 Identities=17% Similarity=0.244 Sum_probs=86.8
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003779 434 YSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE 513 (796)
Q Consensus 434 ~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le 513 (796)
.+......+.+||+-|.+|-+|-..|--...+-..-+.++-..-..|+... ..++......|..|.+|+.-..-...
T Consensus 154 ~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dc---v~QL~~An~qia~LseELa~k~Ee~~ 230 (306)
T PF04849_consen 154 LSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDC---VKQLSEANQQIASLSEELARKTEENR 230 (306)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHH---HHHhhhcchhHHHHHHHHHHHHHHHH
Confidence 344455678899999999888888776655554444444444444444322 11122223344444444444444444
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 003779 514 SFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 593 (796)
Q Consensus 514 ~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ 593 (796)
....|....+.+..+...|.|.++.|.+.|...+...+-.+-.+. .|+.-++.+|. ++...+...|
T Consensus 231 rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~-------aEL~elqdkY~-------E~~~mL~EaQ 296 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQ-------AELQELQDKYA-------ECMAMLHEAQ 296 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-------HHHHHHHHHH
Confidence 445555555555566667777777777777665555554444443 34444445554 5667788888
Q ss_pred HHHHHHHH
Q 003779 594 EEKKMMQS 601 (796)
Q Consensus 594 EEKklLqS 601 (796)
||.|.+.+
T Consensus 297 EElk~lR~ 304 (306)
T PF04849_consen 297 EELKTLRK 304 (306)
T ss_pred HHHHHhhC
Confidence 88887654
No 99
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.93 E-value=6.9 Score=44.75 Aligned_cols=148 Identities=23% Similarity=0.267 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHH-------H
Q 003779 460 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADE-------R 532 (796)
Q Consensus 460 qR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~E-------R 532 (796)
...|+..+..-+....|-..|.....-....+...|.++.++++....--..+.+|..|...++.++..+.+ -
T Consensus 287 ~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~ 366 (522)
T PF05701_consen 287 KKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEA 366 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhh
Confidence 344556666666666666666666666666777777777777776666666666666666666666644433 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 003779 533 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 607 (796)
Q Consensus 533 aK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~as 607 (796)
.-.|...+..|..++.++|...-.++.++.+++.|+..++..+..++..=..++..+++-..--..+...++.+.
T Consensus 367 ~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~ 441 (522)
T PF05701_consen 367 MSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALS 441 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345666666666666666666666667777777777777777776666666666777776655566666666433
No 100
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=94.88 E-value=4.1 Score=41.65 Aligned_cols=130 Identities=15% Similarity=0.184 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHH-----------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q 003779 458 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVV-----------NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC 526 (796)
Q Consensus 458 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v-----------~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~ 526 (796)
.|..++..-..-++.+|.-+..|..+.+.....+ ..+...|+.++...+.+...|.-.+.-|.++-.+.
T Consensus 57 sl~~aw~~i~~e~e~~a~~H~~la~~L~~~v~~l~~~~~~~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~ 136 (239)
T cd07647 57 TLKSSWDSLRKETENVANAHIQLAQSLREEAEKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREK 136 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555556666666666655555543333 34456666666666667777777777777776666
Q ss_pred hHHHHHHHHH-----HHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 003779 527 NAADERAKIL-----ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 593 (796)
Q Consensus 527 naA~ERaK~L-----AaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ 593 (796)
..|....... ..|+.-++.++.+.+..--++..+-.....+...++.++. ..+....+.+|
T Consensus 137 e~a~~~~~~~~~~~~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~------~~~~~~~~~~Q 202 (239)
T cd07647 137 DKAEQAYEKSSSGAQPKEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVEWE------SEHATACQVFQ 202 (239)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 6665332221 3577788888887777777777776666666666666665 34556777777
No 101
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.81 E-value=7.8 Score=42.56 Aligned_cols=41 Identities=37% Similarity=0.528 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 003779 443 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDS 483 (796)
Q Consensus 443 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~ 483 (796)
-.|.--|..|.+|---|...|+.-+.-+..|..||.+|-..
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~ 63 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREA 63 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777788888888888888888888888899888888654
No 102
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.77 E-value=7.8 Score=47.28 Aligned_cols=59 Identities=19% Similarity=0.197 Sum_probs=38.5
Q ss_pred chhhHHHHHhhHHHHHHHHHHHH------HHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhh
Q 003779 678 IPHDQMRMIHNINALISELALEK------EELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMAN 745 (796)
Q Consensus 678 Ip~DQlR~IdSInaLisELa~ER------eravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELltsq~ma~ 745 (796)
-.+.+-.||+-|++|++.|+-.| +.+-.++.-+-.+|..|++ |.|+-+|++--+.+.+-
T Consensus 457 aIeQcnemv~rir~l~~sle~qrKVeqe~emlKaen~rqakkiefmkE---------eiQethldyR~els~lA 521 (1265)
T KOG0976|consen 457 AIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAENERQAKKIEFMKE---------EIQETHLDYRSELSELA 521 (1265)
T ss_pred HHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHh
Confidence 35788899999999999887655 4444555555556666654 34555666655555443
No 103
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=94.77 E-value=2.4 Score=52.30 Aligned_cols=137 Identities=28% Similarity=0.310 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHhhhHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Q 003779 463 LEASRALSESLAAENSSL-------TDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 535 (796)
Q Consensus 463 L~~s~~l~EsLa~ENsaL-------t~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~ 535 (796)
+....+..+.|..|-+++ ++.|+-|-..-..|+.+.++|+..++-...+++.+..|+.-++..+.+..+=.
T Consensus 443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii-- 520 (1041)
T KOG0243|consen 443 KKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEII-- 520 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 333444445555555544 44454444455599999999999999999999999999988777655544322
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 003779 536 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 606 (796)
Q Consensus 536 LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~a 606 (796)
.....+|.++.+. ..++++.++....++.++.+++....+.=+.=+..++.++.+....-+-+-+.
T Consensus 521 --~~~~~se~~l~~~---a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~~~~~~~~~~ 586 (1041)
T KOG0243|consen 521 --SQQEKSEEKLVDR---ATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQLSENLSTLHGL 586 (1041)
T ss_pred --HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHhhhhhHHHHHHHHH
Confidence 2233444444433 67778888888888888888888777777777777777777665544444433
No 104
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.67 E-value=3.4 Score=50.88 Aligned_cols=178 Identities=25% Similarity=0.351 Sum_probs=92.6
Q ss_pred ccccccccCCchhhHHHH-------------------HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003779 428 ENQHGFYSTKHNEDFAAL-------------------EQHIE--DLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ 486 (796)
Q Consensus 428 e~~~~F~s~~~~~~faaL-------------------qqhIe--DLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNq 486 (796)
.+.--|...++-.+||.| ++|++ ||-++--+|++.+....+--+.|-+++++|....+.
T Consensus 141 ~NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~ 220 (1072)
T KOG0979|consen 141 DNLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVER 220 (1072)
T ss_pred CchhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 345569999999999965 45554 556666778888887777777777777777655554
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh-----------
Q 003779 487 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL----------- 555 (796)
Q Consensus 487 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eL----------- 555 (796)
-... ...++.+|.|+.- --.+..+....||.+..+....|.+..+.|-.++..++.+.-.|++..=
T Consensus 221 ~rer-~~~~~~Ie~l~~k--~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~ 297 (1072)
T KOG0979|consen 221 VRER-ERKKSKIELLEKK--KKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQR 297 (1072)
T ss_pred HHHH-HHHHHHHHHHHHh--ccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHH
Confidence 3322 1233333333210 1112233345555555555555555555555555444444444433111
Q ss_pred -------hhHHH---hhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 003779 556 -------KLERQ---LENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 608 (796)
Q Consensus 556 -------KleKE---lE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa 608 (796)
|...- +.....++.....+++.+.+.+.+.+..|..+.+..-.+|..|.++..
T Consensus 298 ~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~~ 360 (1072)
T KOG0979|consen 298 ELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETED 360 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Confidence 11111 111333444444555555555555555555555555555555554433
No 105
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.60 E-value=8.4 Score=45.26 Aligned_cols=159 Identities=23% Similarity=0.313 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 003779 448 HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQL---KSEMEKLQEEIKVQLVELESFRNEYANVRL 524 (796)
Q Consensus 448 hIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qL---k~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~ 524 (796)
-|+.+..+.-.|.-.+.+..+-.+..-.++..+-..|--..-.+.=| ..-|++|+.-+++-...+..|..+|+.++.
T Consensus 343 ~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~ 422 (594)
T PF05667_consen 343 QIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQRLVELAQQWEKHRA 422 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444444444455555555555554333332222 345677777777777778888888877776
Q ss_pred hhhHHHHHHH------------------HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHH--HHHHHHHHHH----hHHH
Q 003779 525 ECNAADERAK------------------ILASEVIGLEEKALRLRSNELKLERQLENSQS--EISSYKKKIS----SLEK 580 (796)
Q Consensus 525 E~naA~ERaK------------------~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~--Er~S~~~q~s----si~k 580 (796)
.+-+--++.+ .|-.++..+++++..---..=++.++++++.. -|..|.+.+- -|.|
T Consensus 423 pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~K 502 (594)
T PF05667_consen 423 PLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRK 502 (594)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHH
Confidence 5554444433 22333333333333221111133344444322 2444555443 3344
Q ss_pred hhhhHHHH---HHHHHHHHHHHHHHHHhh
Q 003779 581 ERQDFQST---IEALQEEKKMMQSKLRKA 606 (796)
Q Consensus 581 ER~~l~st---IdaLQEEKklLqSKLR~a 606 (796)
-+.++.+. ...||.|...++-||..+
T Consensus 503 Qk~eI~KIl~DTr~lQkeiN~l~gkL~Rt 531 (594)
T PF05667_consen 503 QKEEIEKILSDTRELQKEINSLTGKLDRT 531 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 55554444 356788888888888854
No 106
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=94.55 E-value=5.6 Score=41.36 Aligned_cols=130 Identities=15% Similarity=0.207 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH--------------------HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 003779 458 ALQRSLEASRALSESLAAENSSLTDSYNQQRS--------------------VVNQLKSEMEKLQEEIKVQLVELESFRN 517 (796)
Q Consensus 458 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~--------------------~v~qLk~~mE~Lq~Ei~aQ~~~le~l~a 517 (796)
.|..++..-..=++.+|..+..|.++...+-. ....+...++.+|..+..+...|+..+.
T Consensus 61 sl~~aw~~~~~e~e~~a~~H~~l~~~L~~~v~~~i~~~~~e~~~k~~~~~~ke~K~~e~~~~kaqk~~~~~~~~l~kaKk 140 (258)
T cd07655 61 TLETAWKGLLSEAERLSELHLSIRDKLLNDVVEEVKTWQKENYHKSMMGGFKETKEAEDGFAKAQKPWAKLLKKVEKAKK 140 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45555555555566666666666666554422 2334555566666666677777888888
Q ss_pred HHHHHHHhhhHHHHHHHHH-------HHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHH
Q 003779 518 EYANVRLECNAADERAKIL-------ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE 590 (796)
Q Consensus 518 ErDaAq~E~naA~ERaK~L-------AaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stId 590 (796)
-|+.+=.+...|..+.... ..|+.-++.++.+....--+++++-.........+...|. ..+-.+++
T Consensus 141 ~Y~~~cke~e~a~~~~~~~~~d~~~~~~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~------~~m~~~~~ 214 (258)
T cd07655 141 AYHAACKAEKSAQKQENNAKSDTSLSPDQVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYM------EDMEQVFD 214 (258)
T ss_pred HHHHHHHHHHHHHHHHHhcccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH------HHHHHHHH
Confidence 8888777777777665432 3677777777777766666666665555555555444444 34667888
Q ss_pred HHH
Q 003779 591 ALQ 593 (796)
Q Consensus 591 aLQ 593 (796)
.||
T Consensus 215 ~~Q 217 (258)
T cd07655 215 KCQ 217 (258)
T ss_pred HHH
Confidence 888
No 107
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.53 E-value=11 Score=42.95 Aligned_cols=61 Identities=13% Similarity=0.023 Sum_probs=41.5
Q ss_pred HHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 544 EEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 544 EEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 604 (796)
.++++.+++.+..-++.+..+..|+..+.+++..-.+.++.=..++-+...+++-+..+++
T Consensus 184 q~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 184 QAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3455556666666667777788888888888887777776666666666666665555555
No 108
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.52 E-value=7.3 Score=43.12 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 003779 516 RNEYANVRLECNAADERAKILASEVIGLEEKAL 548 (796)
Q Consensus 516 ~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~l 548 (796)
..++..+...+..---+.+.+..++..|+.++.
T Consensus 260 ~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~ 292 (498)
T TIGR03007 260 EKQLDALRLRYTDKHPDVIATKREIAQLEEQKE 292 (498)
T ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Confidence 444444444444444555666666666666643
No 109
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.38 E-value=2.3 Score=41.37 Aligned_cols=29 Identities=21% Similarity=0.391 Sum_probs=12.0
Q ss_pred HHhhhHHHHHHHHhhHHHHHHHHHHHHHH
Q 003779 474 AAENSSLTDSYNQQRSVVNQLKSEMEKLQ 502 (796)
Q Consensus 474 a~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq 502 (796)
..|-+.+-++.+.....+..++++...++
T Consensus 94 ~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 94 QEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33333344444444444444444443333
No 110
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=94.34 E-value=0.04 Score=63.89 Aligned_cols=138 Identities=26% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q 003779 452 LTQEKFALQRSLEASRALSESLAA---ENSSLTDSYNQQRSVVNQLK---SEMEKLQEEIKVQLVELESFRNEYANVRLE 525 (796)
Q Consensus 452 LT~EKfaLqR~L~~s~~l~EsLa~---ENsaLt~~yNqQ~~~v~qLk---~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E 525 (796)
|-+||-+|++-|++...+-+.|+. +|..|-+.++.-...+.... +--+.+-+.| ..++.+.....-+
T Consensus 286 LeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l-------~~lq~~~~~L~ek 358 (722)
T PF05557_consen 286 LEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARAL-------VQLQQENASLTEK 358 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH-------HHHHHHHHHHHHH
Confidence 345555555555555555555544 45555554444333222211 0011111111 1222222333333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 003779 526 CNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 596 (796)
Q Consensus 526 ~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK 596 (796)
++......+.|..++..|+.++.++...-.+++..++.+...+.++.++..++.+||+-|...|+..-.|-
T Consensus 359 ~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~ 429 (722)
T PF05557_consen 359 LGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEE 429 (722)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33344444444555555555555555555555666667777778888888888888888888777766554
No 111
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.31 E-value=7.7 Score=40.32 Aligned_cols=164 Identities=23% Similarity=0.322 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003779 443 AALEQHIEDLTQE--------KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES 514 (796)
Q Consensus 443 aaLqqhIeDLT~E--------KfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~ 514 (796)
..|+..|..+..- +-.|.+.|...+...+.++.|+..|.-..+.....+..++...+.....+..-...+..
T Consensus 28 ~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~ 107 (312)
T PF00038_consen 28 KRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELES 107 (312)
T ss_dssp HHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456666666554 45577888888888888888888887777777777777777777766666666666666
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HHHHHHHhH-------hhh------hHHHhh-----------hhHH
Q 003779 515 FRNEYANVRLECNAADERAKILASEVIGLE----EKALRLRSN-------ELK------LERQLE-----------NSQS 566 (796)
Q Consensus 515 l~aErDaAq~E~naA~ERaK~LAaEVV~LE----Ek~lqLRS~-------eLK------leKElE-----------~l~~ 566 (796)
++.+.+.+-....+...+...|.-|+.-|. +++..||.. +++ +..-|. ..+.
T Consensus 108 lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~ 187 (312)
T PF00038_consen 108 LRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNRE 187 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhhhh
Confidence 666666666666666666666665554432 233333321 111 011111 1222
Q ss_pred HH-HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 003779 567 EI-SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 606 (796)
Q Consensus 567 Er-~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~a 606 (796)
+. ..|..++..+......-...+..+++|.+.+..++..+
T Consensus 188 e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l 228 (312)
T PF00038_consen 188 ELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSL 228 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccccccccccccccccccchhHhHHHHHHhhhhHh
Confidence 22 23445666666666667778888888888888887643
No 112
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.30 E-value=6.8 Score=45.97 Aligned_cols=90 Identities=27% Similarity=0.295 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHHhhh
Q 003779 451 DLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR---NEYANVRLECN 527 (796)
Q Consensus 451 DLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~---aErDaAq~E~n 527 (796)
+-.+|--+|+..|+.-..-.+.+.++-..++..+-+....+.+.+...++|+++++...-..+-+. .=..-.+.-|.
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~ 404 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVE 404 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 334444555666666666677777777777777777777777777777777777665544443332 11122233344
Q ss_pred HHHHHHHHHHHHH
Q 003779 528 AADERAKILASEV 540 (796)
Q Consensus 528 aA~ERaK~LAaEV 540 (796)
+..+|...|+.+-
T Consensus 405 ~s~~rl~~L~~qW 417 (594)
T PF05667_consen 405 ASEQRLVELAQQW 417 (594)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555443
No 113
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=94.30 E-value=3.8 Score=42.09 Aligned_cols=63 Identities=19% Similarity=0.256 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003779 459 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 521 (796)
Q Consensus 459 LqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDa 521 (796)
..+.=.++++-.+.+++|-..|.+.|-+...++..|+...++|+..+..|..+++.+..+.+.
T Consensus 33 ~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~ 95 (251)
T PF11932_consen 33 WVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQ 95 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334446677788889999999999999988899999998888888888888888877665554
No 114
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=94.18 E-value=2.8 Score=44.71 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779 489 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL--ECNAADERAKILASEVIGLEEKALRLRS 552 (796)
Q Consensus 489 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~--E~naA~ERaK~LAaEVV~LEEk~lqLRS 552 (796)
..+.-++.+++++++++..-..+|..|+.+..-.-. +.....+....|..+...++.++..+|+
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~ 235 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRS 235 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666666666666666665433221 2234455666677777777777766664
No 115
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.15 E-value=17 Score=45.96 Aligned_cols=29 Identities=24% Similarity=0.156 Sum_probs=22.5
Q ss_pred HHHHHHhHHHHHHHHHHHhHHHHHHHHHh
Q 003779 715 SKLKDLNNELSRKLEHQTQRLELLTAQNM 743 (796)
Q Consensus 715 ~dLk~lN~ELsRKLE~qtQRLELltsq~m 743 (796)
+++.+++..+-++|.+.++++|..-+|--
T Consensus 789 ~~~Ekq~~~~~~~l~~~K~~~e~~~~q~~ 817 (1317)
T KOG0612|consen 789 KMLEKQLKKLLDELAELKKQLEEENAQLR 817 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66778888888888888888887666543
No 116
>PF13514 AAA_27: AAA domain
Probab=94.08 E-value=8.4 Score=47.43 Aligned_cols=51 Identities=18% Similarity=0.394 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCccCCC
Q 003779 566 SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFG 616 (796)
Q Consensus 566 ~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa~~~e 616 (796)
..+.++.++...+++.+..+...++.+.++...++.+++.+...|.+++.+
T Consensus 452 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~t~~ 502 (1111)
T PF13514_consen 452 ETVEAFRAEFEELERQLRRARDRLEELEEELARLEARLRRLAAAGDVPTEE 502 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 578888899999999999999999999999999999999999988875443
No 117
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=94.05 E-value=4.9 Score=41.90 Aligned_cols=120 Identities=17% Similarity=0.170 Sum_probs=90.2
Q ss_pred HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH-----HHHHHHH
Q 003779 468 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI-----LASEVIG 542 (796)
Q Consensus 468 ~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~-----LAaEVV~ 542 (796)
.|++.|-.+-..|..=.+.|......+...|+.+|.-...+...|+.-+..|.++-.+...|...... -..|+.-
T Consensus 78 ~ia~~L~~~~~~l~~f~~~qke~rK~~e~~~eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q~~~k~~~~~t~keleK 157 (242)
T cd07671 78 QLAGMLREELKSLEEFRERQKEQRKKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREADEAEQTFERSSSTGNPKQSEK 157 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHH
Confidence 46666766666677777888889999999999999999999999999999999888888777543211 2356778
Q ss_pred HHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 003779 543 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 593 (796)
Q Consensus 543 LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ 593 (796)
++.++.+.+.+--++.++-+....+...++..+. ..+....+.+|
T Consensus 158 ~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~w~------~~~~~~~~~~Q 202 (242)
T cd07671 158 SQNKAKQCRDAATEAERVYKQNIEQLDKARTEWE------TEHILTCEVFQ 202 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 8888887777777777777766666666666666 33556677777
No 118
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.04 E-value=9.1 Score=45.86 Aligned_cols=110 Identities=23% Similarity=0.292 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHh----------hhhHHHhhhh
Q 003779 495 KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE----------LKLERQLENS 564 (796)
Q Consensus 495 k~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~e----------LKleKElE~l 564 (796)
.+-+-.++.++..|-.++..+..+.++..-+++--..|.+..+.++..++++..++ +.+ |.+.-|++.+
T Consensus 164 dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~-~~~~qq~a~~~~ql~~~~ele~i 242 (716)
T KOG4593|consen 164 DSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEER-ADHEQQNAELEQQLSLSEELEAI 242 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHhhhHHHHH
Confidence 33344445555555555555566666665565555556555555555555544422 111 1222233332
Q ss_pred HHHHHHHHHHHHhHH-------Hhhh---hHHHHHHHHHHHHHHHHHHHHh
Q 003779 565 QSEISSYKKKISSLE-------KERQ---DFQSTIEALQEEKKMMQSKLRK 605 (796)
Q Consensus 565 ~~Er~S~~~q~ssi~-------kER~---~l~stIdaLQEEKklLqSKLR~ 605 (796)
...+..+..++.-+. .|=- +..-++.-||||++.||+||+.
T Consensus 243 ~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~ 293 (716)
T KOG4593|consen 243 NKNMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGR 293 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 222222222211111 1111 2234677899999999999985
No 119
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.95 E-value=11 Score=44.59 Aligned_cols=77 Identities=25% Similarity=0.377 Sum_probs=47.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHH-------HHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHh-----h---
Q 003779 518 EYANVRLECNAADERAKILASEV-------IGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKE-----R--- 582 (796)
Q Consensus 518 ErDaAq~E~naA~ERaK~LAaEV-------V~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kE-----R--- 582 (796)
+|-..+-|+-+-..|-..|-+|- |.|+..+-.||.+++ |-|++++|+.++.-++..+-.- |
T Consensus 150 qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQV----EyEglkheikRleEe~elln~q~ee~~~Lk~ 225 (772)
T KOG0999|consen 150 QRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQV----EYEGLKHEIKRLEEETELLNSQLEEAIRLKE 225 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555554444 455556777888777 6788999999988887765332 1
Q ss_pred ---hhHHHHHHHHHHHHHH
Q 003779 583 ---QDFQSTIEALQEEKKM 598 (796)
Q Consensus 583 ---~~l~stIdaLQEEKkl 598 (796)
.+|.-.++.||.|...
T Consensus 226 IAekQlEEALeTlq~EReq 244 (772)
T KOG0999|consen 226 IAEKQLEEALETLQQEREQ 244 (772)
T ss_pred HHHHHHHHHHHHHHhHHHH
Confidence 2345567777766543
No 120
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=93.94 E-value=12 Score=42.32 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=49.4
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 003779 456 KFALQRSLE-ASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 523 (796)
Q Consensus 456 KfaLqR~L~-~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq 523 (796)
-.+|+-+++ +.+++.-.|.++-++-.+..-+-.+++.-|..+.|||+++|.-.......+..+-|-.-
T Consensus 105 ~~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~ 173 (561)
T KOG1103|consen 105 AASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLE 173 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 57888999999988887777666778888999999999999877766655544444433
No 121
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=93.67 E-value=4.8 Score=42.04 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 003779 583 QDFQSTIEALQEEKKMMQSKLRK 605 (796)
Q Consensus 583 ~~l~stIdaLQEEKklLqSKLR~ 605 (796)
..++..+...|+.......+|..
T Consensus 106 ~~lq~el~~ar~~~~~ak~~L~~ 128 (246)
T PF00769_consen 106 EELQEELEEAREDEEEAKEELLE 128 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445544445555544
No 122
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=93.67 E-value=7.4 Score=43.13 Aligned_cols=53 Identities=21% Similarity=0.384 Sum_probs=35.3
Q ss_pred hhHHHhhhhHHHHHHHHHHHHhH--------------------HHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 003779 556 KLERQLENSQSEISSYKKKISSL--------------------EKERQDFQSTIEALQEEKKMMQSKLRKASG 608 (796)
Q Consensus 556 KleKElE~l~~Er~S~~~q~ssi--------------------~kER~~l~stIdaLQEEKklLqSKLR~asa 608 (796)
.++.++..++.++..++.++..+ ...+..+...++.++.++..++..|..+..
T Consensus 240 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~ 312 (457)
T TIGR01000 240 TIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKE 312 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555433 234557888999999999999999986544
No 123
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.67 E-value=19 Score=42.63 Aligned_cols=124 Identities=23% Similarity=0.349 Sum_probs=79.4
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 471 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 550 (796)
Q Consensus 471 EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqL 550 (796)
|+|-.|-.+=-.-||++ |-.|+-++.|+++++.--..+++.+..+-.-- .+-...+..+...|-.++..+
T Consensus 92 esLLqESaakE~~yl~k---I~eleneLKq~r~el~~~q~E~erl~~~~sd~-------~e~~~~~E~qR~rlr~elKe~ 161 (772)
T KOG0999|consen 92 ESLLQESAAKEEYYLQK---ILELENELKQLRQELTNVQEENERLEKVHSDL-------KESNAAVEDQRRRLRDELKEY 161 (772)
T ss_pred HHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhcchhhHHHHHHHHHHHHHH
Confidence 56777777777788875 56778888888888888888887775543221 122233444555555555555
Q ss_pred HhHhhhhHHHhhhhHHHHHHHHHHHHhHHH---hhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 551 RSNELKLERQLENSQSEISSYKKKISSLEK---ERQDFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 551 RS~eLKleKElE~l~~Er~S~~~q~ssi~k---ER~~l~stIdaLQEEKklLqSKLR 604 (796)
+--|-++-.+-..|.+|-=++.++++.+-. |=..+.-+|.+|-||..+|-+.+-
T Consensus 162 KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~e 218 (772)
T KOG0999|consen 162 KFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLE 218 (772)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 555555556666666666667777766521 223456678889888888776554
No 124
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.63 E-value=14 Score=45.48 Aligned_cols=60 Identities=25% Similarity=0.269 Sum_probs=36.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH--hhHHH-----HHHhHHHHHHH-----HHHHhHHHHHHHHHhhh
Q 003779 686 IHNINALISELALEKEELVQALSSELA--QSSKL-----KDLNNELSRKL-----EHQTQRLELLTAQNMAN 745 (796)
Q Consensus 686 IdSInaLisELa~EReravsaLa~esr--~~~dL-----k~lN~ELsRKL-----E~qtQRLELltsq~ma~ 745 (796)
-|+|.+||-.+.+|=.+.+..|.++-. ..+.+ --.|+.+..+| ..++.-|+-++=+.|+.
T Consensus 684 ~d~v~~l~k~~~~~a~~~~~~l~~~~al~~~d~~~l~~~lq~~~~~~eel~~~~~di~~e~l~~lld~ema~ 755 (980)
T KOG0980|consen 684 SDRVNDLCKKCGREALAFLVSLSSENALERGDEMLLRQYLQTLNQLGEELLPKELDIDQELLGNLLDIEMAE 755 (980)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHhHHhccccchhhHHHHHHHHHHHHHH
Confidence 578899999999998888888876532 22222 12234444444 34444445466666654
No 125
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.55 E-value=19 Score=42.24 Aligned_cols=105 Identities=18% Similarity=0.250 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003779 440 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAA--------------ENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 505 (796)
Q Consensus 440 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~--------------ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei 505 (796)
.+.+.+-..|++-..++-.|+..+.+.++=.+.|-. +-.....++|+--+.++.+++....|+.|+
T Consensus 92 ~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~ 171 (546)
T KOG0977|consen 92 AELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDEL 171 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 455555566666666665555555444332222211 111123344444444444444444444444
Q ss_pred HHHHHH-------hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 003779 506 KVQLVE-------LESFRNEYANVRLECNAADERAKILASEVIGLE 544 (796)
Q Consensus 506 ~aQ~~~-------le~l~aErDaAq~E~naA~ERaK~LAaEVV~LE 544 (796)
.-=..+ |..++.+.|...+-.+++.-+.+.|-.|+.-+.
T Consensus 172 ~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 172 KRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333333 344444444444444444455555544444443
No 126
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=93.39 E-value=10 Score=38.48 Aligned_cols=76 Identities=16% Similarity=0.229 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh------------HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q 003779 458 ALQRSLEASRALSESLAAENSSLTDSYNQQR------------SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE 525 (796)
Q Consensus 458 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~------------~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E 525 (796)
++..+...-..-++.+|..+..+.+.++.+- .....+..++++++.++......++..+.-|+.+-.+
T Consensus 62 s~~~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke 141 (251)
T cd07653 62 SSVKAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKE 141 (251)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666556566667777777777666332 2233344555555666666666666666666666655
Q ss_pred hhHHHHHH
Q 003779 526 CNAADERA 533 (796)
Q Consensus 526 ~naA~ERa 533 (796)
...|....
T Consensus 142 ~~~a~~k~ 149 (251)
T cd07653 142 AEKAKQKY 149 (251)
T ss_pred HHHHHHHH
Confidence 55555443
No 127
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.39 E-value=7.3 Score=36.90 Aligned_cols=34 Identities=29% Similarity=0.585 Sum_probs=22.0
Q ss_pred HHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 571 YKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 571 ~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 604 (796)
...+-..+.++...+..-++-|.+.=++|+..|-
T Consensus 96 w~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 96 WEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344555555667777777788888887765
No 128
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=93.38 E-value=2.5 Score=44.68 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh----hccCCCc
Q 003779 586 QSTIEALQEEKKMMQSKLRK----ASGSGKS 612 (796)
Q Consensus 586 ~stIdaLQEEKklLqSKLR~----asa~gKa 612 (796)
+..+.+++.+++.++..|.+ ++-.|.+
T Consensus 189 ~a~~~~~~a~l~~a~~~l~~~~I~AP~dG~V 219 (346)
T PRK10476 189 VAQRAAREAALAIAELHLEDTTVRAPFDGRV 219 (346)
T ss_pred HHHHHHHHHHHHHHHHHhhcCEEECCCCcEE
Confidence 34455556666666666653 4555554
No 129
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=93.28 E-value=0.024 Score=65.69 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003779 521 NVRLECNAADERAKILASEVIGLEEKALR 549 (796)
Q Consensus 521 aAq~E~naA~ERaK~LAaEVV~LEEk~lq 549 (796)
-.+.....-.++++.|-...+.||+++.+
T Consensus 329 ~lk~qvk~Lee~N~~l~e~~~~LEeel~~ 357 (713)
T PF05622_consen 329 DLKRQVKELEEDNAVLLETKAMLEEELKK 357 (713)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555543
No 130
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.23 E-value=18 Score=42.72 Aligned_cols=109 Identities=22% Similarity=0.201 Sum_probs=72.6
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------HH---HHhhhhHHHHHH
Q 003779 453 TQEKFA-LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV-------QL---VELESFRNEYAN 521 (796)
Q Consensus 453 T~EKfa-LqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~a-------Q~---~~le~l~aErDa 521 (796)
++||.+ |++.+.+.++.+.++-.-+.++.-.-++-...+.+..+++|.|+.++.. |. ..++.+..|+..
T Consensus 264 lre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~ 343 (581)
T KOG0995|consen 264 LREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNK 343 (581)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 445554 9999999999999999988888888888777777777777766655432 22 234445667777
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHh
Q 003779 522 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQL 561 (796)
Q Consensus 522 Aq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKEl 561 (796)
..++.+.+.-..-.|..+|-.++-++....-...|.-.++
T Consensus 344 l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~ 383 (581)
T KOG0995|consen 344 LKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDL 383 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777666665554443333333333
No 131
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.21 E-value=5.8 Score=37.79 Aligned_cols=60 Identities=20% Similarity=0.276 Sum_probs=29.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003779 438 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 504 (796)
Q Consensus 438 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 504 (796)
..++...+=..|-+| ....++-.+.-|+|.+.+-.+....=.+...+..|+.+++.++++
T Consensus 29 ~~~~~~~vin~i~~L-------l~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere 88 (151)
T PF11559_consen 29 SEDNDVRVINCIYDL-------LQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERE 88 (151)
T ss_pred ccccHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566554 334445555555555555555444444444444455555444444
No 132
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=93.18 E-value=14 Score=44.35 Aligned_cols=146 Identities=20% Similarity=0.212 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHH--HHHHHHH----------HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003779 441 DFAALEQHIEDLTQEKFALQR--SLEASRA----------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ 508 (796)
Q Consensus 441 ~faaLqqhIeDLT~EKfaLqR--~L~~s~~----------l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ 508 (796)
+.-.|-|++.+++++..+=.| ++.-... --+.+-..+.+|-..-=--|+.....++..-+|-+|+.-.
T Consensus 401 E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ek 480 (698)
T KOG0978|consen 401 ETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREK 480 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777776555544 2222222 1112222233333333345666777777777777777777
Q ss_pred HHHhhhhHHHHHHHHHhhhHHHH-------HHHHHHH-------HHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHH
Q 003779 509 LVELESFRNEYANVRLECNAADE-------RAKILAS-------EVIGLEEKALRLRSNELKLERQLENSQSEISSYKKK 574 (796)
Q Consensus 509 ~~~le~l~aErDaAq~E~naA~E-------RaK~LAa-------EVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q 574 (796)
.-..=.++.|++.+.+..+...+ +...|.. .+..||++...+-+..=++.+++.-+..-+..+.+.
T Consensus 481 dd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~ 560 (698)
T KOG0978|consen 481 DDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKK 560 (698)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHH
Confidence 77777777888777776665543 3333333 333444444444444444444444444434444433
Q ss_pred HHhHHHhhhhHH
Q 003779 575 ISSLEKERQDFQ 586 (796)
Q Consensus 575 ~ssi~kER~~l~ 586 (796)
..-+.....+|+
T Consensus 561 ~~e~~~~~~~Lq 572 (698)
T KOG0978|consen 561 AQEAKQSLEDLQ 572 (698)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 133
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.15 E-value=5.5 Score=48.10 Aligned_cols=111 Identities=23% Similarity=0.238 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 003779 445 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 524 (796)
Q Consensus 445 LqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~ 524 (796)
+.+-+..++-|-.+|-++|+.--.+...|-.+....-..++.....+..+..+.--|+-|+.+..-+|+--..||+=-++
T Consensus 97 ~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~ 176 (769)
T PF05911_consen 97 LSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRR 176 (769)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33444445555555666665555555566666666666677777777777777777778888888888888888888888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 003779 525 ECNAADERAKILASEVIGLEEKALRLRSNEL 555 (796)
Q Consensus 525 E~naA~ERaK~LAaEVV~LEEk~lqLRS~eL 555 (796)
.+..|.-|=..=-.-|..||.+|.|||..-=
T Consensus 177 ~ae~a~kqhle~vkkiakLEaEC~rLr~l~r 207 (769)
T PF05911_consen 177 AAEAASKQHLESVKKIAKLEAECQRLRALVR 207 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888877766666778899999999998753
No 134
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=93.13 E-value=9.4 Score=45.06 Aligned_cols=94 Identities=23% Similarity=0.316 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 003779 443 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 522 (796)
Q Consensus 443 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaA 522 (796)
-.|+.-|+.|-.|+-.|..-|+.+.+ +|+.|..-..+|...+.+|...+++++.+..-+..-|+.+..++..
T Consensus 83 ~~Lq~E~~~L~kElE~L~~qlqaqv~-------~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t- 154 (617)
T PF15070_consen 83 QQLQAEAEHLRKELESLEEQLQAQVE-------NNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKAT- 154 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchH-
Confidence 46777777777777777766665444 4555555556888889999999999998877777777777777665
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 523 RLECNAADERAKILASEVIGLEEKA 547 (796)
Q Consensus 523 q~E~naA~ERaK~LAaEVV~LEEk~ 547 (796)
+..|..+++.|-..+.+|++..
T Consensus 155 ---~SRAlsQN~eLK~QL~Elq~~F 176 (617)
T PF15070_consen 155 ---ASRALSQNRELKEQLAELQDAF 176 (617)
T ss_pred ---HHHHHHhHHHHHHHHHHHHHHH
Confidence 3557888888888888888743
No 135
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=93.02 E-value=18 Score=42.24 Aligned_cols=42 Identities=26% Similarity=0.135 Sum_probs=33.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHH
Q 003779 685 MIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSR 726 (796)
Q Consensus 685 ~IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsR 726 (796)
-|++.+++|.||--+=+-+-..|..+.+.|-.+|+.|.+.-+
T Consensus 488 ~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~ 529 (622)
T COG5185 488 DIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELV 529 (622)
T ss_pred HhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 367778888888888888888888888888888877766544
No 136
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=93.00 E-value=1.6 Score=53.65 Aligned_cols=99 Identities=20% Similarity=0.266 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh-------hhHH
Q 003779 489 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL--ECNAADERAKILASEVIGLEEKALRLRSNEL-------KLER 559 (796)
Q Consensus 489 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~--E~naA~ERaK~LAaEVV~LEEk~lqLRS~eL-------KleK 559 (796)
-.++.+-.++|+|.+++.|-+-..--+.+|=--.+. |.++..++.+.|.-|+..+++++.++...-. .+.+
T Consensus 404 ~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~ 483 (1041)
T KOG0243|consen 404 TLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKE 483 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 578889999999999999888777666554333233 6788899999999999999999888877666 4455
Q ss_pred HhhhhHHHHHHHHHHHHhHHHhhhhHHH
Q 003779 560 QLENSQSEISSYKKKISSLEKERQDFQS 587 (796)
Q Consensus 560 ElE~l~~Er~S~~~q~ssi~kER~~l~s 587 (796)
+++.++..+.....++....+|=++++.
T Consensus 484 ~~~~~k~~L~~~~~el~~~~ee~~~~~~ 511 (1041)
T KOG0243|consen 484 EKEKLKSKLQNKNKELESLKEELQQAKA 511 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555544444444333333
No 137
>PRK01156 chromosome segregation protein; Provisional
Probab=92.79 E-value=26 Score=41.85 Aligned_cols=18 Identities=17% Similarity=0.410 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 003779 440 EDFAALEQHIEDLTQEKF 457 (796)
Q Consensus 440 ~~faaLqqhIeDLT~EKf 457 (796)
.+...|..-|+++..++-
T Consensus 483 ~~i~~l~~~~~~l~~~~~ 500 (895)
T PRK01156 483 EKIREIEIEVKDIDEKIV 500 (895)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555544433
No 138
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=92.64 E-value=12 Score=37.44 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779 443 AALEQHIEDLTQEKFALQRSLEASRALSESLAAE 476 (796)
Q Consensus 443 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~E 476 (796)
..|+|+|.||-..=-.+.+++.+.......|..+
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~ 59 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERK 59 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999888777777777776666555443
No 139
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.48 E-value=4.5 Score=38.75 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=37.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHH
Q 003779 486 QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA 533 (796)
Q Consensus 486 qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERa 533 (796)
-..+.|+.|+..+.+++-|+.+-...++.+..+++.+..|....+.++
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999988888888888888888666666555554
No 140
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=92.42 E-value=3.5 Score=48.50 Aligned_cols=40 Identities=13% Similarity=0.281 Sum_probs=23.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003779 480 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 519 (796)
Q Consensus 480 Lt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 519 (796)
+.+++-+....+.-|.+++.++++++.....+++.|+.+.
T Consensus 258 l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 258 IARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444444555666666666666666666666666554
No 141
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=92.39 E-value=0.84 Score=39.34 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHH---hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779 500 KLQEEIKVQLVE---LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 552 (796)
Q Consensus 500 ~Lq~Ei~aQ~~~---le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS 552 (796)
-|+.||+|.... |..+++..-++...+.+|..|++.|..||..|++++-.+|+
T Consensus 5 aL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 5 ALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356677766654 44568888889999999999999999999999999988876
No 142
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.37 E-value=14 Score=37.63 Aligned_cols=86 Identities=17% Similarity=0.305 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHH
Q 003779 454 QEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA 533 (796)
Q Consensus 454 ~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERa 533 (796)
+|--.+.+-.++....+..+..||..|+.---.....+.+|+.++..++.+ +.-..+++..........
T Consensus 34 eei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kd-----------K~~L~~~k~rl~~~ek~l 102 (201)
T PF13851_consen 34 EEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKD-----------KQSLQNLKARLKELEKEL 102 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
Confidence 333333334444555666666666666655544444555555544444332 333444555555566666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003779 534 KILASEVIGLEEKALRL 550 (796)
Q Consensus 534 K~LAaEVV~LEEk~lqL 550 (796)
+.|.||-..|+.++.++
T Consensus 103 ~~Lk~e~evL~qr~~kl 119 (201)
T PF13851_consen 103 KDLKWEHEVLEQRFEKL 119 (201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666666544
No 143
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=92.37 E-value=8.3 Score=44.45 Aligned_cols=60 Identities=17% Similarity=0.331 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHH
Q 003779 516 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKI 575 (796)
Q Consensus 516 ~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ 575 (796)
..=|-..+-+..+..++...+..+...+-+.+..||..|.++++.+..++.++..+++.+
T Consensus 371 ~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~l 430 (560)
T PF06160_consen 371 QVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRL 430 (560)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555555555555555555555555555555555554444444433
No 144
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=92.35 E-value=8.8 Score=47.68 Aligned_cols=85 Identities=25% Similarity=0.313 Sum_probs=65.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 003779 520 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM 599 (796)
Q Consensus 520 DaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklL 599 (796)
+-+.-...++.+-++.|..|-.-||+++..+|..- |-..+..||-.|.+++--+..+|+-.++-++.|++|-.-|
T Consensus 260 ~fykdRveelkedN~vLleekeMLeeQLq~lrars-----e~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstL 334 (1195)
T KOG4643|consen 260 DFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARS-----EGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTL 334 (1195)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcc-----ccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 33445566778888899999999999998876554 2233445566777888888899999999999999999988
Q ss_pred HHHHHhhccC
Q 003779 600 QSKLRKASGS 609 (796)
Q Consensus 600 qSKLR~asa~ 609 (796)
|..-+++.++
T Consensus 335 q~q~eqL~~~ 344 (1195)
T KOG4643|consen 335 QVQKEQLDGQ 344 (1195)
T ss_pred HHHHHHhhhh
Confidence 8877765554
No 145
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=92.27 E-value=17 Score=41.40 Aligned_cols=29 Identities=34% Similarity=0.578 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 003779 440 EDFAALEQHIEDLTQ-EKFALQRSLEASRA 468 (796)
Q Consensus 440 ~~faaLqqhIeDLT~-EKfaLqR~L~~s~~ 468 (796)
.++..|++-|.+|+. ++-.++++|+.+.+
T Consensus 258 ~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~ 287 (582)
T PF09731_consen 258 ERIDALQKELAELKEEEEEELERALEEQRE 287 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667776666665 45577788877764
No 146
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=92.14 E-value=24 Score=42.67 Aligned_cols=106 Identities=20% Similarity=0.298 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHH----
Q 003779 494 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS---- 569 (796)
Q Consensus 494 Lk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~---- 569 (796)
.+.++|..++.-+.|+.-|- .++ +.++...+..+..|...+..||.+....-+.--.+.++.+.|+.+.+
T Consensus 138 ~q~ELee~q~~Hqeql~~Lt---~aH---q~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~ 211 (739)
T PF07111_consen 138 SQRELEEAQRLHQEQLSSLT---QAH---QEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQE 211 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 35566666665555544333 322 22334445555555555555555444333222222333333333333
Q ss_pred ----------HHHHHH-H---------hHHHhhhhHHHHHHHHHHHH-------HHHHHHHHh
Q 003779 570 ----------SYKKKI-S---------SLEKERQDFQSTIEALQEEK-------KMMQSKLRK 605 (796)
Q Consensus 570 ----------S~~~q~-s---------si~kER~~l~stIdaLQEEK-------klLqSKLR~ 605 (796)
++++-+ . .-+.||..|..+|..|||++ .+||+|+..
T Consensus 212 ~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqS 274 (739)
T PF07111_consen 212 ELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQVRVQS 274 (739)
T ss_pred HHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233222 1 12578899999999999988 566666663
No 147
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=92.01 E-value=0.045 Score=65.25 Aligned_cols=122 Identities=20% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 472 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 551 (796)
Q Consensus 472 sLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLR 551 (796)
.|..|.+.++-..-.+...+.+|.....+|..++......++.+..|+|+++.+|.........|..+...+.+++..++
T Consensus 353 rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~le 432 (859)
T PF01576_consen 353 RLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELE 432 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 35555555655555566666666666666666777777777778888888888888877777777777777777777665
Q ss_pred hHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 003779 552 SNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 593 (796)
Q Consensus 552 S~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ 593 (796)
-..-.+..++..+..-.+...+.+..+++.+-.|...++-|+
T Consensus 433 re~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~ 474 (859)
T PF01576_consen 433 RENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQ 474 (859)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 544444555544444444333333333333333333333333
No 148
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=92.00 E-value=5.9 Score=41.07 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHh----hccCCCc
Q 003779 589 IEALQEEKKMMQSKLRK----ASGSGKS 612 (796)
Q Consensus 589 IdaLQEEKklLqSKLR~----asa~gKa 612 (796)
+..++.+.+.++..|.+ ++-.|.+
T Consensus 188 i~~~~~~l~~a~~~l~~~~I~AP~~G~V 215 (334)
T TIGR00998 188 VQEAKERLKTAWLALKRTVIRAPFDGYV 215 (334)
T ss_pred HHHHHHHHHHHHHHhhCcEEEcCCCcEE
Confidence 45555555666666653 5566664
No 149
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=91.97 E-value=15 Score=40.10 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=17.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 580 KERQDFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 580 kER~~l~stIdaLQEEKklLqSKLR 604 (796)
.+...+...+..++.+...++..|.
T Consensus 227 ~~~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 227 KELETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666777777777777777774
No 150
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=91.95 E-value=0.046 Score=65.17 Aligned_cols=140 Identities=21% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHH
Q 003779 492 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY 571 (796)
Q Consensus 492 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~ 571 (796)
..+...+.+++..|+--...++-....++.++..+..+..|++.|..|+..|+..+..+-...=.++.++..+.+++..+
T Consensus 570 ~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l 649 (859)
T PF01576_consen 570 EEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNEL 649 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666677766666666666666666666666777777888888888888877777666667788888888888888
Q ss_pred HHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCCCccccccccccccccccccccc
Q 003779 572 KKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTL 639 (796)
Q Consensus 572 ~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTsTdDLai~d~~~ 639 (796)
..+..++..++..|...|..|+.++...++-++. +.+|. -....||..-+++|...+..+
T Consensus 650 ~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~--~~ek~------kka~~~~~~l~~eL~~Eq~~~ 709 (859)
T PF01576_consen 650 TSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEA--AEEKA------KKAQAQAAQLAEELRQEQDHN 709 (859)
T ss_dssp --------------------------------------------------------------------
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH------HHhHhHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888777777773 33333 111237777777775554444
No 151
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=91.86 E-value=4.7 Score=45.82 Aligned_cols=99 Identities=16% Similarity=0.158 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHH
Q 003779 491 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISS 570 (796)
Q Consensus 491 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S 570 (796)
..+++.++++|..+++-+..+.+.+.++.+.-+.+..+...-......|.-.|+++..+++-..+.++-..+ .
T Consensus 8 ~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~-------~ 80 (459)
T KOG0288|consen 8 KSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEK-------T 80 (459)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 345556666666666666666666666666666666666666666667777777777777766665322222 2
Q ss_pred HHHHHHhHHHhhhhHHHHHHHHHHHH
Q 003779 571 YKKKISSLEKERQDFQSTIEALQEEK 596 (796)
Q Consensus 571 ~~~q~ssi~kER~~l~stIdaLQEEK 596 (796)
...++.-++.+|-+++.+|-.|+|.+
T Consensus 81 ~t~~~~~~en~~~r~~~eir~~~~q~ 106 (459)
T KOG0288|consen 81 LTVDVLIAENLRIRSLNEIRELREQK 106 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22333344445555555555555443
No 152
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=91.86 E-value=12 Score=35.67 Aligned_cols=59 Identities=19% Similarity=0.356 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 492 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 550 (796)
Q Consensus 492 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqL 550 (796)
..|...+.+++.++......++.++...+.++.++..+.++-+.|..++..++..+..+
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~ 113 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQE 113 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444455555555555555555555555555555554444443
No 153
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.82 E-value=9.3 Score=45.71 Aligned_cols=78 Identities=19% Similarity=0.265 Sum_probs=45.5
Q ss_pred HHHHHhhhHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 003779 471 ESLAAENSSLTDSY-NQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKAL 548 (796)
Q Consensus 471 EsLa~ENsaLt~~y-NqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~l 548 (796)
+-|..--.-|.+.| -.+..+-.++++.+..|+.+++.|+..+..+..|++..+....+..||-+..-.--..|+.|+.
T Consensus 539 ~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 539 ELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444554 4455556677777777888888888888877777777655444444444444333344444444
No 154
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=91.65 E-value=20 Score=37.68 Aligned_cols=72 Identities=22% Similarity=0.282 Sum_probs=45.3
Q ss_pred HHHHHHHHhhhHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 003779 468 ALSESLAAENSSLTDSYNQQRS--VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE 545 (796)
Q Consensus 468 ~l~EsLa~ENsaLt~~yNqQ~~--~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEE 545 (796)
..+++|-..-..+++.+|.-+| .|.+||..++.++.. ++..+.+...|+..+..|..+--..|.||-.|=.
T Consensus 9 ~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~-------l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLq 81 (207)
T PF05546_consen 9 FYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDE-------LEAARQEVREAKAAYDDAIQQRSSSQREVNELLQ 81 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666778888898886 455555555555555 5555555555555555566666667788877644
Q ss_pred H
Q 003779 546 K 546 (796)
Q Consensus 546 k 546 (796)
+
T Consensus 82 R 82 (207)
T PF05546_consen 82 R 82 (207)
T ss_pred c
Confidence 3
No 155
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=91.62 E-value=39 Score=41.09 Aligned_cols=107 Identities=24% Similarity=0.279 Sum_probs=64.9
Q ss_pred chhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhH----HHHHHHHhhHHHHHHHHHHHHHHHH-HHHHH
Q 003779 438 HNEDFAALEQHIEDLTQEKFA---LQRSLEASRALSESLAAENSS----LTDSYNQQRSVVNQLKSEMEKLQEE-IKVQL 509 (796)
Q Consensus 438 ~~~~faaLqqhIeDLT~EKfa---LqR~L~~s~~l~EsLa~ENsa----Lt~~yNqQ~~~v~qLk~~mE~Lq~E-i~aQ~ 509 (796)
+++-+++|+..=+.|..+-++ ..+-|-..-+-+++|...|-. |..--|....++ .=|.+||++++| |....
T Consensus 451 kdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il-~~Kee~Ek~~~E~I~k~~ 529 (961)
T KOG4673|consen 451 KDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSIL-RDKEETEKLLQETIEKHQ 529 (961)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHH
Confidence 678899999888888877664 344555555556665554442 222333333322 235667766555 55566
Q ss_pred HHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 003779 510 VELESFRNEYANVRLECNAADERAKILASEVIGLEE 545 (796)
Q Consensus 510 ~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEE 545 (796)
+.+...+.+|.+.|-...+-.+|+..+++=..++-.
T Consensus 530 ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~ 565 (961)
T KOG4673|consen 530 AELTRQKDYYSNSRALAAALEAQALAEQATNDEARS 565 (961)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 667777777777666666666666666666555544
No 156
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=91.58 E-value=28 Score=39.89 Aligned_cols=24 Identities=25% Similarity=0.094 Sum_probs=17.5
Q ss_pred cccccccCcccchHHHHHHHHHHh
Q 003779 758 THDHTAYADEGDEVVERVLGWIMK 781 (796)
Q Consensus 758 ~~~~~~~~degdevvervlgwimk 781 (796)
+.-++.-.-.|-|-|-||++|--+
T Consensus 354 ~~~~t~q~~~Greyv~rv~sagny 377 (499)
T COG4372 354 RRPATRQSPSGREYVTRVTSAGNY 377 (499)
T ss_pred hhhhhccCCCCCCeeEeecccCcc
Confidence 444566667888989999998544
No 157
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=91.57 E-value=18 Score=45.60 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHH
Q 003779 530 DERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA 591 (796)
Q Consensus 530 ~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIda 591 (796)
..|...|++|...|+.++..++...+-..+-.+=++..++=+.+++..++.+=+.++..|+.
T Consensus 172 ~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~ 233 (1109)
T PRK10929 172 QAQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNS 233 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777776665555444444444444445555555554444444444444
No 158
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.51 E-value=14 Score=42.50 Aligned_cols=65 Identities=25% Similarity=0.269 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 003779 532 RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 596 (796)
Q Consensus 532 RaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK 596 (796)
|.+.|+-|+..|-+.+.+||+..=|+..+..+..+.++.++-++.-.++.|-.+-..+-+-|+||
T Consensus 305 r~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ek 369 (502)
T KOG0982|consen 305 RDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEK 369 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44556666666666666666666666666666666666666666555555555444444444444
No 159
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.50 E-value=33 Score=40.02 Aligned_cols=72 Identities=26% Similarity=0.273 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH-----------HHHHHHHHHHHHHHHHHhHhhhhHHH
Q 003779 492 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK-----------ILASEVIGLEEKALRLRSNELKLERQ 560 (796)
Q Consensus 492 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK-----------~LAaEVV~LEEk~lqLRS~eLKleKE 560 (796)
..+..+++.|+.++.......+.+..++.+.+.++..|..+.. .++.|...|+.++.+++...-+.+++
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~ 284 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQ 284 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555444444444444444444444444444433 34444555555555555444444444
Q ss_pred hhh
Q 003779 561 LEN 563 (796)
Q Consensus 561 lE~ 563 (796)
+.+
T Consensus 285 l~~ 287 (650)
T TIGR03185 285 LRE 287 (650)
T ss_pred HHH
Confidence 433
No 160
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=91.49 E-value=8.4 Score=33.17 Aligned_cols=69 Identities=16% Similarity=0.198 Sum_probs=26.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH-----HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779 484 YNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR-----NEYANVRLECNAADERAKILASEVIGLEEKALRLRS 552 (796)
Q Consensus 484 yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~-----aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS 552 (796)
+.+....+.+....+++|+..+......+.... .++-+...-+.....+...+..++..++.++.+.|-
T Consensus 7 l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~ 80 (123)
T PF02050_consen 7 LAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQARE 80 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444333333333222 333443333333334444444444444444433333
No 161
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.45 E-value=18 Score=44.39 Aligned_cols=89 Identities=20% Similarity=0.216 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH---HHhhhHHHHHHHH
Q 003779 459 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV---RLECNAADERAKI 535 (796)
Q Consensus 459 LqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaA---q~E~naA~ERaK~ 535 (796)
+.-.++.-+.....|--||+.|-..|-++-+...+|+++..-|+.++..-....-.+..+.++. --+.++|...+|.
T Consensus 669 lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~ 748 (970)
T KOG0946|consen 669 LDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKK 748 (970)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHH
Confidence 3334444455677788888888888888888888888888877777651111111111111111 1234556666666
Q ss_pred HHHHHHHHHHHH
Q 003779 536 LASEVIGLEEKA 547 (796)
Q Consensus 536 LAaEVV~LEEk~ 547 (796)
|-.+-..|++++
T Consensus 749 l~~~q~~l~~~L 760 (970)
T KOG0946|consen 749 LENDQELLTKEL 760 (970)
T ss_pred HHHHHHHHHHHH
Confidence 666666666666
No 162
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=91.39 E-value=23 Score=42.82 Aligned_cols=125 Identities=18% Similarity=0.181 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhH---hhhhHHHhhhh
Q 003779 488 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSN---ELKLERQLENS 564 (796)
Q Consensus 488 ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~---eLKleKElE~l 564 (796)
...++.|+.+++.|+..+.......+....|...++.|..--.++......+...--.-+.+||.- .+=.+.....-
T Consensus 161 q~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~w 240 (739)
T PF07111_consen 161 QEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAW 240 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHH
Confidence 345667777777777777776666666777777777777666666666655544443335555431 22112222233
Q ss_pred HHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH--hhccCCCc
Q 003779 565 QSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR--KASGSGKS 612 (796)
Q Consensus 565 ~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR--~asa~gKa 612 (796)
.-|+..+...+.-+.+||+.|+.|++=||--...|..-|. .-....|+
T Consensus 241 e~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kv 290 (739)
T PF07111_consen 241 EPEREELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKV 290 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4566677777777778888888888888877766665554 33444455
No 163
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=91.37 E-value=11 Score=38.58 Aligned_cols=89 Identities=22% Similarity=0.269 Sum_probs=55.2
Q ss_pred HHhhhHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 474 AAENSSLTDSYNQQ--RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 551 (796)
Q Consensus 474 a~ENsaLt~~yNqQ--~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLR 551 (796)
--+|=+|+.+|-.. ..-..+|...+++|+.+++.+.-.++.+-.+|-..|.++ -...+.|...-..+-.+..++-
T Consensus 119 R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~---~~~L~~Le~~W~~~v~kn~eie 195 (221)
T PF05700_consen 119 RLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEA---GEELRYLEQRWKELVSKNLEIE 195 (221)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677777433 335578888899999999999999999988888877653 3333444444444444444444
Q ss_pred hHhhhhHHHhhhhH
Q 003779 552 SNELKLERQLENSQ 565 (796)
Q Consensus 552 S~eLKleKElE~l~ 565 (796)
.-+.+++.|+..++
T Consensus 196 ~a~~~Le~ei~~l~ 209 (221)
T PF05700_consen 196 VACEELEQEIEQLK 209 (221)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444433333
No 164
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=91.35 E-value=19 Score=37.33 Aligned_cols=131 Identities=13% Similarity=0.123 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH------------hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 003779 457 FALQRSLEASRALSESLAAENSSLTDSYNQ------------QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 524 (796)
Q Consensus 457 faLqR~L~~s~~l~EsLa~ENsaLt~~yNq------------Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~ 524 (796)
..|..++..-..-++.+|.-+..|...-.. |...-..++..+++++.-+......+...+..|..+-.
T Consensus 58 Gtl~~aw~~~~~e~e~~a~~H~~la~~L~~ev~~~l~~~~~~~~k~rK~~~~~~~k~qk~~~~~~~~~~k~kk~y~~~~k 137 (239)
T cd07658 58 GTLSSAWTCVAEEMESEADIHRNLGSALTEEAIKPLRQVLDEQHKTRKPVENEVDKAAKLLTDWRSEQIKVKKKLHGLAR 137 (239)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555556666666555554432 22233445555666666665666666667777777666
Q ss_pred hhhHHHHHHH--------------------HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhh
Q 003779 525 ECNAADERAK--------------------ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD 584 (796)
Q Consensus 525 E~naA~ERaK--------------------~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~ 584 (796)
|...|..+.. .-..|..-|+.++.+.+....|++.+.......+..++.++. ..
T Consensus 138 E~e~a~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~Kl~~k~~ka~~~~~k~e~~y~~~~~~l~~~~~~~~------~~ 211 (239)
T cd07658 138 ENEKLQDQVEDNKQSCTKQKMLNKLKKSAEVQDKEDEKLEAKRKKGEESRLKAENEYYTCCVRLERLRLEWE------SA 211 (239)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
Confidence 6666665431 233566777777777777777777777776666666666665 34
Q ss_pred HHHHHHHHH
Q 003779 585 FQSTIEALQ 593 (796)
Q Consensus 585 l~stIdaLQ 593 (796)
+...++.+|
T Consensus 212 ~~~~~~~~Q 220 (239)
T cd07658 212 LRKGLNQYE 220 (239)
T ss_pred HHHHHHHHH
Confidence 566777777
No 165
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=91.19 E-value=35 Score=41.36 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=17.6
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHH
Q 003779 471 ESLAAENSSLTDSYNQQRSVVNQLKS 496 (796)
Q Consensus 471 EsLa~ENsaLt~~yNqQ~~~v~qLk~ 496 (796)
+.|..+.+++.+++......+.++.+
T Consensus 228 ~~l~~e~e~l~~~~~el~~~~~~~~~ 253 (908)
T COG0419 228 EELEQEIEALEERLAELEEEKERLEE 253 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777776666666666
No 166
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=91.12 E-value=1.9 Score=37.68 Aligned_cols=65 Identities=18% Similarity=0.211 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 003779 535 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM 599 (796)
Q Consensus 535 ~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklL 599 (796)
.|.+|+..|.+++.++-..-=+.+-++..+..|++++.+++..+-.+=+.|..++++|+.|.+..
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47778888888887775555556667777888888888888877666677777777777665443
No 167
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=90.93 E-value=23 Score=37.08 Aligned_cols=114 Identities=12% Similarity=0.147 Sum_probs=85.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHH-----HHHHHHHH
Q 003779 467 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA-----KILASEVI 541 (796)
Q Consensus 467 ~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERa-----K~LAaEVV 541 (796)
..|+++|..+-..|..=.+.|......++..++.++.....|.-.++.-+..|..+-.+...|..+. -....|+.
T Consensus 78 ~~la~~L~~~~~~~~~f~~~qk~~rKk~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~~~~~~~~~~~~ke~~ 157 (240)
T cd07672 78 IQLAQTLRDEAKKMEDFRERQKLARKKIELIMDAIHKQRAMQFKKTMESKKNYEQKCRDKDEAEQAVNRNANLVNVKQQE 157 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHH
Confidence 3466666666554555557777788888999999999988888888888888887666666655442 12256888
Q ss_pred HHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHH
Q 003779 542 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEK 580 (796)
Q Consensus 542 ~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~k 580 (796)
-++.++.+.+..--|++++-+....+...++..+..-|+
T Consensus 158 K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~~~w~~~~~ 196 (240)
T cd07672 158 KLFAKLAQSKQNAEDADRLYMQNISVLDKIREDWQKEHV 196 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999888888888888888888888887774444
No 168
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=90.88 E-value=2 Score=38.99 Aligned_cols=66 Identities=18% Similarity=0.297 Sum_probs=42.6
Q ss_pred HHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 003779 543 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 608 (796)
Q Consensus 543 LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa 608 (796)
||.||.++=-.--=++-+++.++++-..+..++..+..-|..|..+.+.|++|...-|.|||.+.+
T Consensus 9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG 74 (79)
T PRK15422 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444332222223444444444445556666667777888899999999999999999996543
No 169
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.85 E-value=11 Score=43.50 Aligned_cols=28 Identities=32% Similarity=0.259 Sum_probs=15.2
Q ss_pred cCCCCCCcCCcccccccccCCCCCCCCc
Q 003779 169 YDSSNSSKSGFQGIEESQSKGNDSFPKV 196 (796)
Q Consensus 169 ~~s~~ss~s~~~~~~~~Qs~~~~sslK~ 196 (796)
|-|.|++..-=||+.-+=.+-.-+++|.
T Consensus 43 ~~sgnp~ve~t~GiiHLyk~n~~~s~~~ 70 (493)
T KOG0804|consen 43 YSSGNPSVEETHGIIHLYKKNSHSSLKN 70 (493)
T ss_pred ccCCCCceeeeceeEEEEecCccccccc
Confidence 3445566666666665555544444443
No 170
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.81 E-value=19 Score=42.27 Aligned_cols=12 Identities=0% Similarity=-0.044 Sum_probs=6.8
Q ss_pred HHhhHHHHHHHH
Q 003779 685 MIHNINALISEL 696 (796)
Q Consensus 685 ~IdSInaLisEL 696 (796)
..|.++.|...|
T Consensus 526 ~~Ea~r~lr~~l 537 (754)
T TIGR01005 526 AEEELRVKEEAV 537 (754)
T ss_pred chHHHHHHHHHH
Confidence 355566665555
No 171
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=90.72 E-value=29 Score=38.04 Aligned_cols=41 Identities=15% Similarity=0.304 Sum_probs=16.7
Q ss_pred hhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 003779 561 LENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS 601 (796)
Q Consensus 561 lE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqS 601 (796)
+..++.+++-|-.++--+.+..++++..+..+|.+.+-+..
T Consensus 202 ~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k 242 (294)
T COG1340 202 ADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEK 242 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444444444444444443333
No 172
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=90.72 E-value=18 Score=35.66 Aligned_cols=80 Identities=25% Similarity=0.351 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHH
Q 003779 492 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY 571 (796)
Q Consensus 492 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~ 571 (796)
.-|++.++-|++++..-.-.++.+-.+-.+++.+|..-.+..-.+..+.-.|+.++--+|+.--.+.++++..+..++.+
T Consensus 20 dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eL 99 (140)
T PF10473_consen 20 DSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSEL 99 (140)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555666666666666666666666666666666666555555555554444433
No 173
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=90.71 E-value=10 Score=32.68 Aligned_cols=47 Identities=23% Similarity=0.284 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Q 003779 489 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 535 (796)
Q Consensus 489 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~ 535 (796)
..+.....-+..|...|..+...++.+..++..++..+.+|.-+.|.
T Consensus 45 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~ 91 (123)
T PF02050_consen 45 AQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKK 91 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444433333
No 174
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=90.67 E-value=36 Score=38.97 Aligned_cols=35 Identities=37% Similarity=0.403 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Q 003779 442 FAALEQHIEDLTQEKFALQRSL-EASRALSESLAAE 476 (796)
Q Consensus 442 faaLqqhIeDLT~EKfaLqR~L-~~s~~l~EsLa~E 476 (796)
...+++-|+|+...+-.|+-.. ++.+.|++.|+.-
T Consensus 89 l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~ 124 (420)
T COG4942 89 LKKLRKQIADLNARLNALEVQEREQRRRLAEQLAAL 124 (420)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555554444444443 5555666666554
No 175
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=90.55 E-value=5.1 Score=48.20 Aligned_cols=44 Identities=30% Similarity=0.257 Sum_probs=24.7
Q ss_pred CccccccCCCCCCcCcccccccccccchhhHHHHHhhHHHHHHHHHHHH
Q 003779 652 LPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEK 700 (796)
Q Consensus 652 ~qe~~vs~~pllpe~G~~af~~~~~~Ip~DQlR~IdSInaLisELa~ER 700 (796)
+++---+..+++|+.|.|+ .-.+-.|+ --++-|++=|..+.+|+
T Consensus 344 d~~~~hs~~dl~~psG~~a-~~lAmmlq----~~ldain~eirliqeEk 387 (916)
T KOG0249|consen 344 DRETLHSSADLLSPSGASA-QTLAMMLQ----EQLDAINKEIRLIQEEK 387 (916)
T ss_pred chhhhhccccccCcchhhh-hhhhhhcc----cCCCcccchhhHhHhhh
Confidence 3444445557788889981 11112333 22456777777777776
No 176
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=90.51 E-value=6.3 Score=39.41 Aligned_cols=93 Identities=20% Similarity=0.312 Sum_probs=66.2
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhH-HHHHHHHHHHHhHHHhhhhHHHHHHH
Q 003779 513 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ-SEISSYKKKISSLEKERQDFQSTIEA 591 (796)
Q Consensus 513 e~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~-~Er~S~~~q~ssi~kER~~l~stIda 591 (796)
++.+.|++..+.|+.+-......+..||..|+.+..+.|..-....+...++. .++..++.+..-++-+=.-++..-.-
T Consensus 23 E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~q 102 (159)
T PF05384_consen 23 EQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQ 102 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999888877788877754 34555555555444444444444444
Q ss_pred HHHHHHHHHHHHHh
Q 003779 592 LQEEKKMMQSKLRK 605 (796)
Q Consensus 592 LQEEKklLqSKLR~ 605 (796)
|+.....|+-+|++
T Consensus 103 Lr~rRD~LErrl~~ 116 (159)
T PF05384_consen 103 LRERRDELERRLRN 116 (159)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555554
No 177
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.38 E-value=3.5 Score=42.41 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=10.6
Q ss_pred HHHHHhHHHhhhhHHHHHHHHHHH
Q 003779 572 KKKISSLEKERQDFQSTIEALQEE 595 (796)
Q Consensus 572 ~~q~ssi~kER~~l~stIdaLQEE 595 (796)
..++..+..+.+.+...++++|+.
T Consensus 145 ~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 145 KNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333443444444444445555543
No 178
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=90.35 E-value=11 Score=37.66 Aligned_cols=111 Identities=25% Similarity=0.348 Sum_probs=63.3
Q ss_pred HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 468 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKA 547 (796)
Q Consensus 468 ~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~ 547 (796)
.||-.+..|-+.|.++|=.- +|..|==.+ -.+||.| |++. .++.....|+..|.+..
T Consensus 3 ~lA~~Ig~EfE~lId~~G~e--~v~~LmP~V----------V~vLE~L----e~~~-------~~n~~~~~e~~~L~~d~ 59 (158)
T PF09744_consen 3 DLASSIGKEFERLIDRYGEE--AVKGLMPKV----------VRVLELL----ESLA-------SRNQEHEVELELLREDN 59 (158)
T ss_pred HHHHHHHHHHHHHHHHhChh--HHHHHHHHH----------HHHHHHH----HHHH-------HhhhhhhhHHHHHHHHH
Confidence 57788888888888888542 333332222 1122222 2211 12233334555555555
Q ss_pred HHHHhHhhhhHHHhhhhHHHHHHHHHHHH----hHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 003779 548 LRLRSNELKLERQLENSQSEISSYKKKIS----SLEKERQDFQSTIEALQEEKKMMQSKLRKASG 608 (796)
Q Consensus 548 lqLRS~eLKleKElE~l~~Er~S~~~q~s----si~kER~~l~stIdaLQEEKklLqSKLR~asa 608 (796)
.+|..+-- .+|+ .+..+..++. ....|+.++..-|+.||++.+.|+.++++.+.
T Consensus 60 e~L~~q~~-~ek~------~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~ 117 (158)
T PF09744_consen 60 EQLETQYE-REKE------LRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSD 117 (158)
T ss_pred HHHHHHHH-HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 55533221 1222 2233333333 56688889999999999999999999997544
No 179
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.17 E-value=3.3 Score=42.61 Aligned_cols=73 Identities=18% Similarity=0.317 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHH
Q 003779 494 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKK 573 (796)
Q Consensus 494 Lk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~ 573 (796)
++..+.+|++|++.=..+|+.+..++ +.+...|+..+..++..+.+|+.+-=++.++++.++.|++.++.
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~----------~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~ 160 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTW----------NQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANL 160 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666544444444333332 24555555555555555554444444444455555555444444
Q ss_pred HHH
Q 003779 574 KIS 576 (796)
Q Consensus 574 q~s 576 (796)
++.
T Consensus 161 ~~~ 163 (206)
T PRK10884 161 QLD 163 (206)
T ss_pred HHH
Confidence 444
No 180
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=90.12 E-value=7.7 Score=46.79 Aligned_cols=84 Identities=20% Similarity=0.298 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 003779 514 SFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 593 (796)
Q Consensus 514 ~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ 593 (796)
-+.+|...|++...--.|-++.|...|.+-..-.++.|+.-| .+.+.|..|.++++++|..+.++++.+..-+++|.
T Consensus 174 e~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAl---e~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr 250 (916)
T KOG0249|consen 174 ELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAAL---EDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLR 250 (916)
T ss_pred HHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 344555555555544555566666666544444444444433 23445666667777777777777777777777766
Q ss_pred HHHHHHH
Q 003779 594 EEKKMMQ 600 (796)
Q Consensus 594 EEKklLq 600 (796)
-|.+.|.
T Consensus 251 ~e~~qL~ 257 (916)
T KOG0249|consen 251 GELDQLR 257 (916)
T ss_pred HHHHHHH
Confidence 6655554
No 181
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=90.08 E-value=24 Score=35.99 Aligned_cols=50 Identities=22% Similarity=0.311 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 003779 527 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 576 (796)
Q Consensus 527 naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~s 576 (796)
....+.+..|..++..+...+.+|+...-++++.++.++.....+..++.
T Consensus 95 ~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~ 144 (219)
T TIGR02977 95 QKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQ 144 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555444444443
No 182
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=90.04 E-value=29 Score=37.76 Aligned_cols=30 Identities=20% Similarity=0.363 Sum_probs=12.6
Q ss_pred cccccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 003779 429 NQHGFYSTKHNEDFAALEQHIEDLTQEKFALQ 460 (796)
Q Consensus 429 ~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLq 460 (796)
..++.++.....++. .+-+.+|..+....+
T Consensus 199 ~~~~i~~~~~~~~~~--~~~l~~l~~~l~~~~ 228 (444)
T TIGR03017 199 QEKGIVSSDERLDVE--RARLNELSAQLVAAQ 228 (444)
T ss_pred HHcCCcccCcccchH--HHHHHHHHHHHHHHH
Confidence 345555554433332 133444544444433
No 183
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=89.81 E-value=27 Score=44.05 Aligned_cols=44 Identities=7% Similarity=0.041 Sum_probs=27.9
Q ss_pred hhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 561 LENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 561 lE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 604 (796)
++.+..|..+.........+.|+-+...++.+|.+.+.||..+-
T Consensus 189 ~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in 232 (1109)
T PRK10929 189 VDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLN 232 (1109)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555666666666777777777777777766666554
No 184
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=89.78 E-value=35 Score=39.49 Aligned_cols=122 Identities=14% Similarity=0.238 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH----------HHHHHhHhhh
Q 003779 487 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEK----------ALRLRSNELK 556 (796)
Q Consensus 487 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk----------~lqLRS~eLK 556 (796)
-...+.++.+.++.|...+.....+-..+...++....-.+++.++++.|..|+..|... ...+...-=.
T Consensus 276 ~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~ 355 (560)
T PF06160_consen 276 VEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKE 355 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 334455555556555555555555556666666666666667777777777666655321 1111111112
Q ss_pred hHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 003779 557 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 608 (796)
Q Consensus 557 leKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa 608 (796)
+++..+.+...+..-..-|+.|..+=..+...++.+.++-+.+...|..+..
T Consensus 356 l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~ 407 (560)
T PF06160_consen 356 LEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRK 407 (560)
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333333333334444545444444555555555555555555544433
No 185
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=89.76 E-value=21 Score=34.94 Aligned_cols=124 Identities=17% Similarity=0.192 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q 003779 448 HIEDLTQEKFALQRSLEASRALSESLAAENSSLT-DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC 526 (796)
Q Consensus 448 hIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt-~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~ 526 (796)
-|+++--+-..|+..+.+.+.-..+.-+=.+.|. -+|=+..-...+|...+|. --.+|..++.=+.+..+-+
T Consensus 7 ~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeE-------Rn~eL~~Lk~~~~~~v~~L 79 (177)
T PF13870_consen 7 EISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEE-------RNKELLKLKKKIGKTVQIL 79 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555544444333333333 3444444444444444433 3344555555566666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 003779 527 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 578 (796)
Q Consensus 527 naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi 578 (796)
++-.|....+..|...+..++....-..-+++.++..++.+++.++++...+
T Consensus 80 ~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l 131 (177)
T PF13870_consen 80 THVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKL 131 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777767666666666666666666666666666666666666655543
No 186
>PRK11281 hypothetical protein; Provisional
Probab=89.63 E-value=69 Score=40.64 Aligned_cols=35 Identities=17% Similarity=0.333 Sum_probs=22.5
Q ss_pred HHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 570 SYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 570 S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 604 (796)
+.........+.|+-+...++.+|.+.+.||..+-
T Consensus 217 ~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in 251 (1113)
T PRK11281 217 GNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAIN 251 (1113)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445556666677777777777777777665
No 187
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=89.55 E-value=2.2 Score=37.81 Aligned_cols=66 Identities=17% Similarity=0.318 Sum_probs=47.2
Q ss_pred HHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHhhhh-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 003779 481 TDSYNQQRSVVNQLKSEMEK-LQEEIKVQLVELESF-RNEYANVRLECNAADERAKILASEVIGLEEK 546 (796)
Q Consensus 481 t~~yNqQ~~~v~qLk~~mE~-Lq~Ei~aQ~~~le~l-~aErDaAq~E~naA~ERaK~LAaEVV~LEEk 546 (796)
.+..++--...+.+++++++ ++..++..+..+.-+ +.|||+.+..+..++++...|.+.|..||++
T Consensus 12 ~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl~~LE~~ 79 (79)
T PF04380_consen 12 AKQISEALPAAQGPREEIEKNIRARLQSALSKLDLVTREEFDAQKAVLARTREKLEALEARLAALEAQ 79 (79)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444444444556666654 344555555555555 9999999999999999999999999999864
No 188
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=89.50 E-value=21 Score=42.59 Aligned_cols=87 Identities=15% Similarity=0.209 Sum_probs=66.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 003779 522 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS 601 (796)
Q Consensus 522 Aq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqS 601 (796)
....|....++.+.|+.++..|+.++..++-...++.++++....+..-. ...+...+..+.... +=+++.+.|+.
T Consensus 232 l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~L~~~~~~l~~~~-~e~~~r~kL~N 307 (670)
T KOG0239|consen 232 LEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTL---QSDLESLEENLVEKK-KEKEERRKLHN 307 (670)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 33445556666889999999999999999999999999888877665444 555556677777666 66788888888
Q ss_pred HHHhhccCCCc
Q 003779 602 KLRKASGSGKS 612 (796)
Q Consensus 602 KLR~asa~gKa 612 (796)
.+..+-++-++
T Consensus 308 ~i~eLkGnIRV 318 (670)
T KOG0239|consen 308 EILELKGNIRV 318 (670)
T ss_pred HHHHhhcCceE
Confidence 88888888776
No 189
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=89.48 E-value=37 Score=42.68 Aligned_cols=23 Identities=17% Similarity=0.462 Sum_probs=13.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 003779 581 ERQDFQSTIEALQEEKKMMQSKL 603 (796)
Q Consensus 581 ER~~l~stIdaLQEEKklLqSKL 603 (796)
|=+.++..+++|+-+|+.|.-+.
T Consensus 579 elkk~idaL~alrrhke~LE~e~ 601 (1195)
T KOG4643|consen 579 ELKKYIDALNALRRHKEKLEEEI 601 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666654
No 190
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=89.47 E-value=5.3 Score=35.32 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=36.6
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 003779 522 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 576 (796)
Q Consensus 522 Aq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~s 576 (796)
.....+.|.+....|+.|+..|.++-..|....-.++.+.+.++.|+......+.
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567788888888888888888877765555555555556655555544444
No 191
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=89.39 E-value=65 Score=40.03 Aligned_cols=167 Identities=14% Similarity=0.201 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHH-----------------HHHHHHHHHH
Q 003779 439 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVV-----------------NQLKSEMEKL 501 (796)
Q Consensus 439 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v-----------------~qLk~~mE~L 501 (796)
...+..+.+.+..+..+.-.+...+.+.+...+.+......+.+.+-+....+ .++..++..+
T Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 615 (1047)
T PRK10246 536 EKEVKKLGEEGAALRGQLDALTKQLQRDESEAQSLRQEEQALTQQWQAVCASLNITLQPQDDIQPWLDAQEEHERQLRLL 615 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhHHHHH----------------------------HHHHHH---HHHHHHHHHHHH
Q 003779 502 QEEIKVQLVELESFRNEYANVRLECNAADER----------------------------AKILAS---EVIGLEEKALRL 550 (796)
Q Consensus 502 q~Ei~aQ~~~le~l~aErDaAq~E~naA~ER----------------------------aK~LAa---EVV~LEEk~lqL 550 (796)
++ +......++.+..+.......+..+..+ ...+.. +...+++++..+
T Consensus 616 ~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1047)
T PRK10246 616 SQ-RHELQGQIAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQEDEEASWLATRQQEAQSWQQRQNELTALQNRIQQL 694 (1047)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 003779 551 RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 606 (796)
Q Consensus 551 RS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~a 606 (796)
+...-.+.+..+.++.........+..+......+...+..+.+....++.++..+
T Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 750 (1047)
T PRK10246 695 TPLLETLPQSDDLPHSEETVALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKA 750 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 192
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.38 E-value=44 Score=39.38 Aligned_cols=10 Identities=30% Similarity=0.292 Sum_probs=4.7
Q ss_pred cccccCCCCC
Q 003779 334 FLDSLNVPRA 343 (796)
Q Consensus 334 FLDSlnV~Ra 343 (796)
|...|.|.|.
T Consensus 142 l~~~L~V~~~ 151 (754)
T TIGR01005 142 MREKLNVFGV 151 (754)
T ss_pred HHhcceEEec
Confidence 4444555444
No 193
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=89.35 E-value=72 Score=40.43 Aligned_cols=105 Identities=19% Similarity=0.272 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHH
Q 003779 495 KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKK 574 (796)
Q Consensus 495 k~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q 574 (796)
.+++.++..+|..+.-..+....|...-+.+...+......+-.++-..|+++.. |-.-++..-+....+..+....+.
T Consensus 233 ~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e-rp~li~~ke~~~~~k~rl~~~~k~ 311 (1141)
T KOG0018|consen 233 NDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAE-RPELIKVKENASHLKKRLEEIEKD 311 (1141)
T ss_pred hHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHhhcchhhccchhHHHHhhhh
Confidence 3344444444444443333333333333333334444444455555566666665 555555555555555666666666
Q ss_pred HHhHHHhhhhHHHHHHHHHHHHHHHH
Q 003779 575 ISSLEKERQDFQSTIEALQEEKKMMQ 600 (796)
Q Consensus 575 ~ssi~kER~~l~stIdaLQEEKklLq 600 (796)
+..++++-+...++|++|+.+++.+.
T Consensus 312 i~~~kk~~~~~~~~ie~~ek~l~av~ 337 (1141)
T KOG0018|consen 312 IETAKKDYRALKETIERLEKELKAVE 337 (1141)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 66666666666677777776665443
No 194
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=89.30 E-value=23 Score=36.88 Aligned_cols=61 Identities=13% Similarity=0.227 Sum_probs=40.8
Q ss_pred HHHHHHHHhhhH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhH
Q 003779 468 ALSESLAAENSS-LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNA 528 (796)
Q Consensus 468 ~l~EsLa~ENsa-Lt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~na 528 (796)
.+++.|.+++.. |..=...+...+..++..|+.++..++....++...+..|..+-.+...
T Consensus 78 ~la~~L~~ev~~~l~~f~~~~~k~~k~~e~~~~k~~K~~~~~~~~~~kaKk~y~~~cke~e~ 139 (233)
T cd07649 78 KFSSKLQSEVEKPLLNFRENFKKDMKKLDHHIADLRKQLASRYAAVEKARKALLERQKDLEG 139 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666633 3333344566778888888888888888888888887777665444444
No 195
>PF13166 AAA_13: AAA domain
Probab=89.18 E-value=49 Score=38.30 Aligned_cols=42 Identities=26% Similarity=0.467 Sum_probs=19.1
Q ss_pred HHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 003779 558 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM 599 (796)
Q Consensus 558 eKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklL 599 (796)
++++..+..++....+++..++..-......++.+-++++.+
T Consensus 430 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 430 EKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 333444444444444444444443333444445555555554
No 196
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=89.11 E-value=40 Score=37.23 Aligned_cols=150 Identities=20% Similarity=0.358 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 443 AALEQHIEDLTQEKFALQRSLEASRA-----------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE 511 (796)
Q Consensus 443 aaLqqhIeDLT~EKfaLqR~L~~s~~-----------l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~ 511 (796)
||++.|=+-.|.+ --|.++++++++ =+-.|-+.|+-|+.....--+.++-|+-++-..+.-+.---++
T Consensus 102 aAi~d~dqsq~sk-rdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~ 180 (305)
T PF14915_consen 102 AAIQDHDQSQTSK-RDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLA 180 (305)
T ss_pred HHHhhHHHHHhhH-HHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444544444443 345666666665 3446778888888888888888889999888888888888888
Q ss_pred hhhhHHHHHHHHHhhhHH-------HHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhh
Q 003779 512 LESFRNEYANVRLECNAA-------DERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD 584 (796)
Q Consensus 512 le~l~aErDaAq~E~naA-------~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~ 584 (796)
|+.+..+..-++...-+. .+....--.--..+|+++-++-|.-+=++.+|+.+..+.+.-++-+.-| -++
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~Vini---Q~~ 257 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINI---QDQ 257 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHH
Confidence 888776666655444332 2233333345577899999999999999999999998877766666655 566
Q ss_pred HHHHHHHHHHHH
Q 003779 585 FQSTIEALQEEK 596 (796)
Q Consensus 585 l~stIdaLQEEK 596 (796)
++.+|..||-|.
T Consensus 258 f~d~~~~L~ae~ 269 (305)
T PF14915_consen 258 FQDIVKKLQAES 269 (305)
T ss_pred HHHHHHHHHHHH
Confidence 778888888443
No 197
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=89.08 E-value=4.9 Score=39.01 Aligned_cols=64 Identities=31% Similarity=0.386 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 003779 490 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC--NAADERAKILASEVIGLEEKALRLRSN 553 (796)
Q Consensus 490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~--naA~ERaK~LAaEVV~LEEk~lqLRS~ 553 (796)
.+.++..++.+|++++......+..+.+|+.+..... .++......|..|+..|++++..||+.
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4555566666666666666666666666666655554 566777778888888888888888763
No 198
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.74 E-value=11 Score=45.22 Aligned_cols=77 Identities=14% Similarity=0.226 Sum_probs=42.8
Q ss_pred ccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003779 428 ENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 504 (796)
Q Consensus 428 e~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 504 (796)
+.|++-|-..+.-=..+++.|+.-|..+|-.-+..|+..++--+.|.+.-+.|.+||-+-...-+.|...++++-+.
T Consensus 546 ~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~ 622 (717)
T PF10168_consen 546 KVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQL 622 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444344444444556666666666666666666666666666666555666666655555544554444444443
No 199
>PRK10698 phage shock protein PspA; Provisional
Probab=88.68 E-value=32 Score=35.58 Aligned_cols=121 Identities=14% Similarity=0.173 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 003779 441 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 520 (796)
Q Consensus 441 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD 520 (796)
-..+|.|.|.||-..--.+.+++++..+.-..+.. +|.+.... ++.++.. |. ++|..=..+.+
T Consensus 25 P~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er-------~~~~~~~~-------~~~~e~k--A~-~Al~~G~EdLA 87 (222)
T PRK10698 25 PQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTR-------RIEQAEAQ-------QVEWQEK--AE-LALRKEKEDLA 87 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH-------HHHHHHH--HH-HHHHCCCHHHH
Confidence 45799999999999888887777765544433322 22222222 2222221 00 11111111111
Q ss_pred -HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 003779 521 -NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 578 (796)
Q Consensus 521 -aAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi 578 (796)
.|..+-..+.+++..|..+....+..+.+|+....+++..++.++..++.+..++..+
T Consensus 88 r~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A 146 (222)
T PRK10698 88 RAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAA 146 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233344456666777777777777777777777777777777777777666666655
No 200
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=88.68 E-value=29 Score=37.71 Aligned_cols=161 Identities=18% Similarity=0.237 Sum_probs=123.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 003779 438 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN 517 (796)
Q Consensus 438 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~a 517 (796)
..+.+++|.+-..|+-.+...++|.+...+.-++.|..|...+....| .....++.+|.|=+|++.|- ..++.
T Consensus 20 ~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~----k~~~~k~KLE~LCRELQk~N---k~lke 92 (309)
T PF09728_consen 20 PEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELS----KAILAKSKLESLCRELQKQN---KKLKE 92 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 367899999999999999999999999999999999999999988887 44567777888877777665 33444
Q ss_pred HHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 003779 518 EYANVRLECNAAD-ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 596 (796)
Q Consensus 518 ErDaAq~E~naA~-ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK 596 (796)
|.-....+....+ +=...++.-+-....++-+-.....|+..+-+.++....++..+|..- =.++.+.+....-|.
T Consensus 93 E~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~r---E~~~~~~~k~keLE~ 169 (309)
T PF09728_consen 93 ESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELR---EEHFEKLLKQKELEV 169 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHH
Confidence 4444333333222 223456666777777777777788888888889999999999999843 246778888888999
Q ss_pred HHHHHHHHhhcc
Q 003779 597 KMMQSKLRKASG 608 (796)
Q Consensus 597 klLqSKLR~asa 608 (796)
+++..||-++..
T Consensus 170 Ql~~AKl~q~~~ 181 (309)
T PF09728_consen 170 QLAEAKLEQQQE 181 (309)
T ss_pred HHHHHHHHHHHH
Confidence 999999986544
No 201
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.61 E-value=78 Score=39.97 Aligned_cols=168 Identities=23% Similarity=0.343 Sum_probs=97.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHHHhhhHHHHHH
Q 003779 440 EDFAALEQHIEDLTQEKFALQRS-----------------------------------LEASRALSESLAAENSSLTDSY 484 (796)
Q Consensus 440 ~~faaLqqhIeDLT~EKfaLqR~-----------------------------------L~~s~~l~EsLa~ENsaLt~~y 484 (796)
.+..-|+--+.-|-.||-.+++. |+.-..-.+.--.|-+++--+|
T Consensus 272 ~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky 351 (1200)
T KOG0964|consen 272 CEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKY 351 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 46677777777777777666554 1111222333345666777788
Q ss_pred HHhhHHHHHHHHHHHHHHHHHH---HHHHHhhh----------hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 485 NQQRSVVNQLKSEMEKLQEEIK---VQLVELES----------FRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 551 (796)
Q Consensus 485 NqQ~~~v~qLk~~mE~Lq~Ei~---aQ~~~le~----------l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLR 551 (796)
|.+...-+.++..+..|++... +-...-.+ ++.|+.......+.-.++-..|+.|...|+.+....
T Consensus 352 ~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~- 430 (1200)
T KOG0964|consen 352 NSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEK- 430 (1200)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-
Confidence 8888888888888877776322 11111122 255555566667777777778888877777655432
Q ss_pred hHhh-hhHHHhh-------hhHHHHHHHHHHHHhHHHhh-------hhHHHHHHHHHHHHHHHHHHHHhhcc
Q 003779 552 SNEL-KLERQLE-------NSQSEISSYKKKISSLEKER-------QDFQSTIEALQEEKKMMQSKLRKASG 608 (796)
Q Consensus 552 S~eL-KleKElE-------~l~~Er~S~~~q~ssi~kER-------~~l~stIdaLQEEKklLqSKLR~asa 608 (796)
-.++ +++..+. .+..+.-+..+++..+...| ..+++.|+++.+.+...+..|+.+..
T Consensus 431 ~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~ 502 (1200)
T KOG0964|consen 431 LEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMN 502 (1200)
T ss_pred HHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222 2222222 23223333333333333333 34677888888888889999986554
No 202
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=88.58 E-value=41 Score=36.67 Aligned_cols=35 Identities=11% Similarity=0.217 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003779 487 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 521 (796)
Q Consensus 487 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDa 521 (796)
......-|.++++++++++.....++..|+.+..-
T Consensus 169 ~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i 203 (444)
T TIGR03017 169 AQKAALWFVQQIAALREDLARAQSKLSAYQQEKGI 203 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33456667777777777777777777887776543
No 203
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=88.52 E-value=41 Score=36.56 Aligned_cols=55 Identities=15% Similarity=0.251 Sum_probs=35.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHHH
Q 003779 684 RMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELL 738 (796)
Q Consensus 684 R~IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELl 738 (796)
..|+...-=|-.|+-|...+-+.--..-..+-+|-..+..+..+++.++..++-+
T Consensus 244 ~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kL 298 (309)
T PF09728_consen 244 KEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKL 298 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666667777666666666666666777777777777766665555444
No 204
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=88.41 E-value=15 Score=43.19 Aligned_cols=112 Identities=21% Similarity=0.315 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Q 003779 458 ALQRSLEASRALSESLAAENSSLTDSYNQQRS---VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 534 (796)
Q Consensus 458 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~---~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK 534 (796)
-|-+.|.++++..+.|.+|-+.+...|==-.. .+-+.+.+++.|...+..=....+.=.-=|-.+|-.+..-.....
T Consensus 313 ~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~ 392 (570)
T COG4477 313 ILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALT 392 (570)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888888843222 233344444433333222222222222334455555666666666
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHH
Q 003779 535 ILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 569 (796)
Q Consensus 535 ~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~ 569 (796)
....+-+.+.+.++.||-.+++++-.+++++..+.
T Consensus 393 ~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~ 427 (570)
T COG4477 393 DIEDEQEKVQEHLTSLRKDELEARENLERLKSKLH 427 (570)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777888888888888877766666654433
No 205
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=88.31 E-value=39 Score=36.08 Aligned_cols=96 Identities=16% Similarity=0.208 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH-------HHHHHHHHHHHHHHHHHhHhhhhHHHhhhh
Q 003779 492 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK-------ILASEVIGLEEKALRLRSNELKLERQLENS 564 (796)
Q Consensus 492 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK-------~LAaEVV~LEEk~lqLRS~eLKleKElE~l 564 (796)
.++...++++|.-.....-.++.-+..|..+-.+...|..|.. ....|+.-+..++.+.+-+--+++.+-+..
T Consensus 115 K~~e~~~~KaQK~~~k~~k~v~~sKk~Ye~~Cke~~~A~~~~~~a~~d~~~s~~q~eK~~~k~~k~~~~~~~sk~~Y~~~ 194 (258)
T cd07680 115 KEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKLAMTREANSKAEQSVTPEQQKKLQDKVDKCKQDVQKTQEKYEKV 194 (258)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888888888888888888877778876633 234667777777666655555555554444
Q ss_pred HHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 003779 565 QSEISSYKKKISSLEKERQDFQSTIEALQ 593 (796)
Q Consensus 565 ~~Er~S~~~q~ssi~kER~~l~stIdaLQ 593 (796)
..+++.+...|. ..+....|.+|
T Consensus 195 l~~ln~~~~~y~------~~m~~vfd~~Q 217 (258)
T cd07680 195 LDDVGKTTPQYM------ENMEQVFEQCQ 217 (258)
T ss_pred HHHHHHhhHHHH------HHHHHHHHHHH
Confidence 444444444444 24667888888
No 206
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=88.26 E-value=44 Score=36.61 Aligned_cols=18 Identities=17% Similarity=0.418 Sum_probs=10.4
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 003779 581 ERQDFQSTIEALQEEKKM 598 (796)
Q Consensus 581 ER~~l~stIdaLQEEKkl 598 (796)
||+.+.-.+.+|.+|-+-
T Consensus 158 Eke~llesvqRLkdEard 175 (333)
T KOG1853|consen 158 EKEVLLESVQRLKDEARD 175 (333)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555666666666433
No 207
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.22 E-value=23 Score=41.04 Aligned_cols=73 Identities=21% Similarity=0.132 Sum_probs=31.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 003779 481 TDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL 555 (796)
Q Consensus 481 t~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eL 555 (796)
+.+|++ ++++..+...+.+-.|...-..++..+.++..++-..+..-+.+.++++.|...++|.-.-|+.++.
T Consensus 341 ~~e~~q--sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~ 413 (493)
T KOG0804|consen 341 MSEYEQ--SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQD 413 (493)
T ss_pred HHHHHH--HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 334444 3333333333333333333233334444444444444445555555555555544444444444433
No 208
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=88.02 E-value=18 Score=38.33 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 003779 589 IEALQEEKKMMQSKLRKA 606 (796)
Q Consensus 589 IdaLQEEKklLqSKLR~a 606 (796)
++.++.+.+.++..|.++
T Consensus 185 ~~~~~a~~~~~~a~l~~a 202 (346)
T PRK10476 185 VDALVAQRAAREAALAIA 202 (346)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 344555666666666654
No 209
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=87.97 E-value=68 Score=38.47 Aligned_cols=214 Identities=22% Similarity=0.245 Sum_probs=131.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 003779 466 SRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF---RNEYANVRLECNAADERAKILASEVIG 542 (796)
Q Consensus 466 s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l---~aErDaAq~E~naA~ERaK~LAaEVV~ 542 (796)
=+++-++|-.=|.+|++-=|+|.. |..|++.+.++.+.+.-..-....+ ..+...+-.+. .-.++...++..+..
T Consensus 123 ~~~lk~~lee~~~el~~~k~qq~~-v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~-~L~~~~~~~~~q~~~ 200 (629)
T KOG0963|consen 123 NEELKEELEEVNNELADLKTQQVT-VRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREA-GLKDEEQNLQEQLEE 200 (629)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 456777788888888877777654 4556666666655444333322222 12222221111 123455667888888
Q ss_pred HHHHHHHHHhHhhhhHHHhhhhHHH----HHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCCC
Q 003779 543 LEEKALRLRSNELKLERQLENSQSE----ISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKT 618 (796)
Q Consensus 543 LEEk~lqLRS~eLKleKElE~l~~E----r~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa~~~ek~ 618 (796)
||+++..+-+..+...+++..++.- ...--.+|.+||.|=...+.-|..||+|...|...|..+..+-+.
T Consensus 201 le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~------ 274 (629)
T KOG0963|consen 201 LEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKL------ 274 (629)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh------
Confidence 9999988877777788887765544 777788999999999999999999999999998888854432222
Q ss_pred cccccccccccccccccccccccCCccccccCCCccccccCCCCCCcCcccccccccccchhhHHHHHhhHHHHHHHHHH
Q 003779 619 AASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELAL 698 (796)
Q Consensus 619 ~a~~kDASTsTdDLai~d~~~esSnqE~ldsas~qe~~vs~~pllpe~G~~af~~~~~~Ip~DQlR~IdSInaLisELa~ 698 (796)
+ ..+|+ +.. . .+++. -+++. .++-..|+.+=..+..
T Consensus 275 -----~---~~~~i----~~~---~-~~L~~-------------------------kd~~i---~~L~~di~~~~~S~~~ 310 (629)
T KOG0963|consen 275 -----A---KIDDI----DAL---G-SVLNQ-------------------------KDSEI---AQLSNDIERLEASLVE 310 (629)
T ss_pred -----c---cCCch----HHH---H-HHHhH-------------------------HHHHH---HHHHHHHHHHHHHHHH
Confidence 0 11222 000 0 00000 01122 1344455555566666
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHH
Q 003779 699 EKEELVQALSSELAQSSKLKDLNNELSRKLEHQ 731 (796)
Q Consensus 699 EReravsaLa~esr~~~dLk~lN~ELsRKLE~q 731 (796)
|++.....+..-.+.+......-++|.++|+.+
T Consensus 311 e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 311 EREKHKAQISALEKELKAKISELEELKEKLNSR 343 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 777777777777777776666666776666543
No 210
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=87.94 E-value=19 Score=34.46 Aligned_cols=88 Identities=18% Similarity=0.266 Sum_probs=60.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHhhhh
Q 003779 437 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ-LVELESF 515 (796)
Q Consensus 437 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ-~~~le~l 515 (796)
..+...+.|+.+|++.....-.|...=+.=+....+|-++|.+++.+.|.....|.++...|+--.. +. .+...-.
T Consensus 13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~---ak~~l~~r~~ 89 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQ---AKLELESRLL 89 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 4566789999999998887777766666667778888888888888888887777777777654211 11 2222234
Q ss_pred HHHHHHHHHhhh
Q 003779 516 RNEYANVRLECN 527 (796)
Q Consensus 516 ~aErDaAq~E~n 527 (796)
++|-|.|..|+-
T Consensus 90 k~~~dka~lel~ 101 (107)
T PF09304_consen 90 KAQKDKAILELK 101 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHhhhhHHHHH
Confidence 666666666553
No 211
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=87.85 E-value=32 Score=37.64 Aligned_cols=70 Identities=20% Similarity=0.317 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHH
Q 003779 490 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQS 566 (796)
Q Consensus 490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~ 566 (796)
-+..|+..|..+++-++--++.+++|-.|..+..- +...|--.+..||+.+.+++-.-.+.-++++.+++
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~y-------qvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~ 147 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMY-------QVDLLKDKLEELEETLAQLQREYREKIRELERQKR 147 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888888888888888888776433 44556666667777766665544444444444443
No 212
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=87.84 E-value=44 Score=42.72 Aligned_cols=48 Identities=23% Similarity=0.347 Sum_probs=27.5
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHH
Q 003779 681 DQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRL 735 (796)
Q Consensus 681 DQlR~IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRL 735 (796)
+-++.++-|.+ |+.+.++--++|- +...+|..||+++.+-|....+|.
T Consensus 1704 ~a~~kl~~l~d----Le~~y~~~~~~L~---~~~aeL~~Le~r~~~vl~~I~~rv 1751 (1758)
T KOG0994|consen 1704 QANEKLDRLKD----LELEYLRNEQALE---DKAAELAGLEKRVESVLDHINERV 1751 (1758)
T ss_pred HHHHHHHHHHH----HHHHHhhhhHHHH---HHHHHhhhHHHHHHHHHHHHhhhh
Confidence 33455555444 4544444444443 344567777888888777776653
No 213
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=87.81 E-value=24 Score=38.57 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 003779 587 STIEALQEEKKMMQSKLRKAS 607 (796)
Q Consensus 587 stIdaLQEEKklLqSKLR~as 607 (796)
..+..++.+.+.++..|.++.
T Consensus 227 ~~~~~~~~~l~~~~~~l~~~~ 247 (421)
T TIGR03794 227 KELETVEARIKEARYEIEELE 247 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666433
No 214
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=87.61 E-value=22 Score=38.36 Aligned_cols=74 Identities=26% Similarity=0.402 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH----HHHh
Q 003779 532 RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS----KLRK 605 (796)
Q Consensus 532 RaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqS----KLR~ 605 (796)
..+.+..++..++..+..+.++|-.++-.+++-+.|.++..+.+.++++-|=-...+.++|.+|++.+.. |.||
T Consensus 170 ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRN 247 (267)
T PF10234_consen 170 AIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRN 247 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677888888888888888888888889999999999999999999999999999999999988764 5555
No 215
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=87.55 E-value=25 Score=33.40 Aligned_cols=82 Identities=21% Similarity=0.220 Sum_probs=35.4
Q ss_pred HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 468 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKA 547 (796)
Q Consensus 468 ~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~ 547 (796)
...+.|-.+|..|.+.+=.....+.+++.++..+..+++.-.........+++.+...++-.. =...|...+..+|+++
T Consensus 34 ~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~-l~~~L~~~~~e~eeeS 112 (150)
T PF07200_consen 34 QEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDA-LLARLQAAASEAEEES 112 (150)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHH-HHHHHHHHHHHHHHHH
Confidence 333444444444444433333333333333333333322222233333334444433333222 2345777888888888
Q ss_pred HHH
Q 003779 548 LRL 550 (796)
Q Consensus 548 lqL 550 (796)
-.+
T Consensus 113 e~l 115 (150)
T PF07200_consen 113 EEL 115 (150)
T ss_dssp HHH
T ss_pred HHH
Confidence 766
No 216
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=87.37 E-value=79 Score=38.55 Aligned_cols=65 Identities=28% Similarity=0.330 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 540 VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 540 VV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 604 (796)
|.-|+.+|..||.+-=--.|-++.+..+-..+.+++.+-.+-=..+.--|++||+|.+-++.+..
T Consensus 589 ~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~e 653 (786)
T PF05483_consen 589 MKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHE 653 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33455566666554333355566677777777777776666666677778888888877766544
No 217
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=87.22 E-value=41 Score=35.14 Aligned_cols=22 Identities=14% Similarity=0.074 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 003779 584 DFQSTIEALQEEKKMMQSKLRK 605 (796)
Q Consensus 584 ~l~stIdaLQEEKklLqSKLR~ 605 (796)
.....+..++...+.++..|.+
T Consensus 183 ~~~~~~~~~~~~l~~a~~~l~~ 204 (327)
T TIGR02971 183 LAQAEVKSALEAVQQAEALLEL 204 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566666666666666663
No 218
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=87.13 E-value=37 Score=34.49 Aligned_cols=14 Identities=14% Similarity=0.375 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 003779 452 LTQEKFALQRSLEA 465 (796)
Q Consensus 452 LT~EKfaLqR~L~~ 465 (796)
+=.|+-.+.+.-++
T Consensus 27 f~keRa~iE~eYak 40 (251)
T cd07653 27 FVKERAAIEQEYAK 40 (251)
T ss_pred HHHHHHHHHHHHHH
Confidence 33455555444433
No 219
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=87.05 E-value=18 Score=37.37 Aligned_cols=67 Identities=24% Similarity=0.340 Sum_probs=45.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHH
Q 003779 522 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQST 588 (796)
Q Consensus 522 Aq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~st 588 (796)
+|...++-.++.+.|..|+..|+.++..|+...=++++.+.....++.+..+++..++.-|.+|.-.
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~ 106 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPL 106 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666666666666666666666666667777777777777777777777777766553
No 220
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.96 E-value=6.3 Score=35.61 Aligned_cols=64 Identities=22% Similarity=0.310 Sum_probs=40.0
Q ss_pred HHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 003779 543 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 606 (796)
Q Consensus 543 LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~a 606 (796)
||+|+.+.--.---++-+++.|+++-.++..+++.+..-|..|..+.+.|++|-..-|.|||.+
T Consensus 9 LE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444332222234445555555555566666666667777788888888888888888844
No 221
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=86.83 E-value=40 Score=35.12 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=6.4
Q ss_pred hhHHHHHHHHHHHHH
Q 003779 440 EDFAALEQHIEDLTQ 454 (796)
Q Consensus 440 ~~faaLqqhIeDLT~ 454 (796)
.++..++..++.+..
T Consensus 80 ~~l~~a~a~l~~~~~ 94 (334)
T TIGR00998 80 LALAKAEANLAALVR 94 (334)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 222
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=86.77 E-value=66 Score=37.05 Aligned_cols=60 Identities=20% Similarity=0.331 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 541 IGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 541 V~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 604 (796)
..+++++..++.-.-|-..+++.+...+..+++++..+... ...++.|+++++.++.++.
T Consensus 304 ~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~----~~~le~L~~el~~l~~~l~ 363 (563)
T TIGR00634 304 NEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDS----DESLEALEEEVDKLEEELD 363 (563)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHH
Confidence 34555555554433333345555555555666655544321 1234444555544444444
No 223
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.69 E-value=85 Score=38.20 Aligned_cols=113 Identities=19% Similarity=0.208 Sum_probs=78.7
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh---
Q 003779 453 TQEKFALQRSL-EASRALSESLAAENSSLTDSYNQQRS---VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE--- 525 (796)
Q Consensus 453 T~EKfaLqR~L-~~s~~l~EsLa~ENsaLt~~yNqQ~~---~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E--- 525 (796)
-++++.++|+- -.++...+..-..|..+++-|=-|.. +-..+++++|+.+++.++-...-..+..|-....++
T Consensus 79 kr~el~~~k~~~i~~r~~~~~~dr~~~~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~ 158 (716)
T KOG4593|consen 79 KRAELELTKAQSILARNYEAEVDRKHKLLTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGT 158 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555543 34566667777788888876554443 334567778888877777777766666665555544
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhH
Q 003779 526 -CNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ 565 (796)
Q Consensus 526 -~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~ 565 (796)
.+++++++-.+++||-..+.++.++-+.--+.+|++...+
T Consensus 159 lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~ 199 (716)
T KOG4593|consen 159 LRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQH 199 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999999999999999988777767666665533
No 224
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=86.65 E-value=9.6 Score=40.04 Aligned_cols=22 Identities=23% Similarity=0.219 Sum_probs=11.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHH
Q 003779 516 RNEYANVRLECNAADERAKILA 537 (796)
Q Consensus 516 ~aErDaAq~E~naA~ERaK~LA 537 (796)
+.||+.++.++..|..+.+...
T Consensus 144 ~~~~~~~~~~~~~a~~~~~~a~ 165 (331)
T PRK03598 144 ANDLENARSSRDQAQATLKSAQ 165 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666555555444443
No 225
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=86.58 E-value=19 Score=37.80 Aligned_cols=63 Identities=22% Similarity=0.286 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHH
Q 003779 533 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSK 602 (796)
Q Consensus 533 aK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSK 602 (796)
.+.+..|+..|..+=+ .. ..+|..++.+|..++.-+..+..||...+..|.++++|..-|...
T Consensus 34 L~e~~kE~~~L~~Er~----~h---~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~ 96 (230)
T PF10146_consen 34 LEEYRKEMEELLQERM----AH---VEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDE 96 (230)
T ss_pred HHHHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555544433 22 234556777888888888888888888888888888887666543
No 226
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=86.56 E-value=41 Score=40.68 Aligned_cols=48 Identities=23% Similarity=0.307 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003779 457 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 504 (796)
Q Consensus 457 faLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 504 (796)
|.|++...++....-.|-.|-+.|...-=+-+..+..+.-.+-+|+.+
T Consensus 485 fklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq 532 (698)
T KOG0978|consen 485 FKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQ 532 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667776666666666666665555555444444444444444444444
No 227
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=86.50 E-value=42 Score=34.48 Aligned_cols=67 Identities=19% Similarity=0.217 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 003779 527 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 593 (796)
Q Consensus 527 naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ 593 (796)
.-+..|--.|.+|+..|+.++..++-..+-.-.--+=++..++-+..++..+..+.+.|+..|+...
T Consensus 146 ~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R 212 (240)
T PF12795_consen 146 PLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKR 212 (240)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566667777777777777665444433332233455566667777777777777777776654
No 228
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.96 E-value=74 Score=36.81 Aligned_cols=98 Identities=22% Similarity=0.284 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHh----hhhHHHH
Q 003779 514 SFRNEYANVRLECNA-ADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKE----RQDFQST 588 (796)
Q Consensus 514 ~l~aErDaAq~E~na-A~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kE----R~~l~st 588 (796)
.+.+||+..+..... -..+...|.--|+.|++...-|+++=+-.=-.|.++.+|.+-+-.+-+++|.+ +--++..
T Consensus 198 ~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ek 277 (446)
T KOG4438|consen 198 SLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEK 277 (446)
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 446777777665544 67788888889999999999999999888888888888888877777777665 4557778
Q ss_pred HHHHHHHHHHHHHHHHhhccCCC
Q 003779 589 IEALQEEKKMMQSKLRKASGSGK 611 (796)
Q Consensus 589 IdaLQEEKklLqSKLR~asa~gK 611 (796)
|+.||.=.+.++.-++.+...+-
T Consensus 278 v~~~qti~~e~~~~lk~i~~~~~ 300 (446)
T KOG4438|consen 278 VTNLQTIEKELKALLKKISSDGV 300 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Confidence 88888777777777777776663
No 229
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=85.92 E-value=4.6 Score=47.65 Aligned_cols=80 Identities=16% Similarity=0.297 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Q 003779 455 EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 534 (796)
Q Consensus 455 EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK 534 (796)
+-|+..|.+..+.++-+++.-|--.|--+--+..+.++++.-++|.|+++|-....+|++++.|...||....++++++.
T Consensus 73 ~~~s~~r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~ 152 (907)
T KOG2264|consen 73 SGYSIGRILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNN 152 (907)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence 44556666666667767776666666666666667788888888888888888889999999999999999999888864
No 230
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=85.88 E-value=44 Score=34.18 Aligned_cols=149 Identities=11% Similarity=0.156 Sum_probs=93.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003779 436 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 515 (796)
Q Consensus 436 ~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l 515 (796)
+..+.+|..+...|+.|..-=-.+.|..+|-.+=...|+.+...+-..||..+..=..|.+-+++.=+-+......++.+
T Consensus 10 ~~~d~~F~~ikey~~~L~~~l~~iekv~~Rl~~r~~~l~~~~~e~g~~f~~ls~~E~~l~~~le~~g~~~d~~~~~~~~~ 89 (201)
T cd07622 10 RNPDKRFEDLKNYSDELQTNLNNLLKVRARLAERLYGVYKIHANYGRVFSEWSAIEKEMGDGLQKAGHYMDSYAASIDNG 89 (201)
T ss_pred CCCCHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567898888888888765444555555544444556677778888888777666666666555554444444333332
Q ss_pred ----------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhH
Q 003779 516 ----------RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDF 585 (796)
Q Consensus 516 ----------~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l 585 (796)
--||...-..+..+..+-...+.+.+.+++.+.+.+.. ++.+++..+.+.+.+..++
T Consensus 90 ~~~~~~f~e~LkEy~~ya~slk~vlk~r~~~q~~~e~~~~~L~~k~~~---l~~~ve~a~~~~e~f~~~~---------- 156 (201)
T cd07622 90 LEDEELIADQLKEYLFFADSLRAVCKKHELLQYDLEKAEDALANKKQQ---GEEAVKEAKDELNEFVKKA---------- 156 (201)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----------
Confidence 23455555555555556666777888888877777544 5666666666555555444
Q ss_pred HHHHHHHHHHHH
Q 003779 586 QSTIEALQEEKK 597 (796)
Q Consensus 586 ~stIdaLQEEKk 597 (796)
..++++-|++|.
T Consensus 157 ~~E~~rF~~~K~ 168 (201)
T cd07622 157 LEDVERFKKQKV 168 (201)
T ss_pred HHHHHHHHHHHH
Confidence 467777777763
No 231
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=85.81 E-value=73 Score=36.59 Aligned_cols=89 Identities=25% Similarity=0.284 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHH-------hHHHHHHHHHhhh----hccc-------c
Q 003779 689 INALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQT-------QRLELLTAQNMAN----ENIS-------F 750 (796)
Q Consensus 689 InaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qt-------QRLELltsq~ma~----e~~~-------a 750 (796)
++.=+.+-+.|+..++.+|+..-+. .. ..|+..+|-.+| ..||.+++.+-+- |.+. +
T Consensus 360 ~~~k~~~ke~E~q~lr~~l~~~~~~----s~-~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~~~~~ 434 (511)
T PF09787_consen 360 LQLKLKEKESEIQKLRNQLSARASS----SS-WNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLKEEAS 434 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc----CC-cHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHhhcc
Confidence 3344445566667777776664411 11 346677776666 4456666554432 1111 1
Q ss_pred CCCCccccccccccCcccchHHHHHHHHHHhhcCCC
Q 003779 751 RQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGG 786 (796)
Q Consensus 751 ~~~d~~~~~~~~~~~degdevvervlgwimklfpgg 786 (796)
....++ -...|.+.+|.+-.| +-+.|+..|+.
T Consensus 435 ~~~~~~---~~~~~~~~~~d~~~r-~~~~~~~~~~d 466 (511)
T PF09787_consen 435 NNRPSS---ILMKYSNSEDDAESR-VPLLMKDSPHD 466 (511)
T ss_pred CCCCch---hhHhhccCCCchhhh-hhhhccCCCcc
Confidence 122222 233566667777777 67777777665
No 232
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=85.65 E-value=33 Score=36.62 Aligned_cols=120 Identities=12% Similarity=0.172 Sum_probs=62.7
Q ss_pred HHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 472 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 551 (796)
Q Consensus 472 sLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLR 551 (796)
+++.+-..+...|..++ ...-.+-..++.++..+...|+..+..|+.|-.+...|+.+.....++.-.-.+.+-++|
T Consensus 92 ~v~~~l~~~~~~l~~~r---k~~~~~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~~k~~ka~~d~~~tk~~~eK~k 168 (252)
T cd07675 92 RVYGELMRYSHDLKGER---KMHLQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERLDNDTNATKSDVEKAK 168 (252)
T ss_pred HHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccCHHHHHHHH
Confidence 33444444444444422 222255577788888888888888999998888888887774443322211111122222
Q ss_pred hHhhhhHHHhhhhHHHHHHHHHHHHhHHHhh-----hhHHHHHHHHH--HHHH
Q 003779 552 SNELKLERQLENSQSEISSYKKKISSLEKER-----QDFQSTIEALQ--EEKK 597 (796)
Q Consensus 552 S~eLKleKElE~l~~Er~S~~~q~ssi~kER-----~~l~stIdaLQ--EEKk 597 (796)
..-=+-..++++.+ ..|..++.-+-+.- ..|-..+|.|| +|++
T Consensus 169 ~~~~~~~q~~e~aK---n~Y~~~L~~~N~~q~k~Y~e~mP~vfd~lQ~leE~R 218 (252)
T cd07675 169 QQLNLRTHMADESK---NEYAAQLQNFNGEQHKHFYIVIPQIYKQLQEMDERR 218 (252)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 22222222233222 33444444443332 33777888898 4444
No 233
>PRK10722 hypothetical protein; Provisional
Probab=85.64 E-value=2.1 Score=45.57 Aligned_cols=51 Identities=29% Similarity=0.289 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHHHHHH
Q 003779 691 ALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQ 741 (796)
Q Consensus 691 aLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELltsq 741 (796)
.|+-.|+.||.|--+-.-+...+++.|+.++++|.++|+.++.+||-+|.=
T Consensus 155 ~l~l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdI 205 (247)
T PRK10722 155 ALQLALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLTDI 205 (247)
T ss_pred HHHHhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677788876655556666799999999999999999999999999863
No 234
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=85.48 E-value=50 Score=34.67 Aligned_cols=73 Identities=18% Similarity=0.266 Sum_probs=45.7
Q ss_pred HHHHHHHHhhhHHHHHHHHh-hHHH-----------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Q 003779 468 ALSESLAAENSSLTDSYNQQ-RSVV-----------NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 535 (796)
Q Consensus 468 ~l~EsLa~ENsaLt~~yNqQ-~~~v-----------~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~ 535 (796)
.=++.+|.....+.+.|+-+ ...+ ....+...++++|+....-+|...+-.|+.+..++..|.+-.+.
T Consensus 77 ~qt~~~a~~h~~lse~l~~~i~~~l~~l~~d~~~~~Kk~~e~~~~lq~el~~~~~eL~k~kK~Y~~~~~ea~~A~~K~~~ 156 (241)
T cd07656 77 VQTKQESRDHSTLSDIYSNNLVQRLGQMSEDLQRISKKCREIGSQLHDELLRVLNELQTAMKTYHTYHAESKSAERKLKE 156 (241)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566677777777777653 1222 23344555666777777777777777777777777777666665
Q ss_pred HHHHH
Q 003779 536 LASEV 540 (796)
Q Consensus 536 LAaEV 540 (796)
.....
T Consensus 157 ae~~~ 161 (241)
T cd07656 157 AEKQE 161 (241)
T ss_pred HHHHH
Confidence 55443
No 235
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=85.45 E-value=47 Score=34.09 Aligned_cols=89 Identities=13% Similarity=0.191 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 003779 463 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIG 542 (796)
Q Consensus 463 L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~ 542 (796)
|.-.+.-.+.|.-||-.|-.-.-.|...++...+.=..|-+-|..+.-++-+++...-.++-.+.++.-+.+....|+..
T Consensus 21 l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k 100 (194)
T PF15619_consen 21 LAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLK 100 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445668889999988888888888888777777777777888888888888888888888888888888888888
Q ss_pred HHHHHHHHH
Q 003779 543 LEEKALRLR 551 (796)
Q Consensus 543 LEEk~lqLR 551 (796)
+.+++..|.
T Consensus 101 ~~~~l~~L~ 109 (194)
T PF15619_consen 101 TKDELKHLK 109 (194)
T ss_pred HHHHHHHHH
Confidence 888887763
No 236
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=85.39 E-value=52 Score=34.60 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHH
Q 003779 563 NSQSEISSYKKKISSLEKERQDFQSTIEALQE 594 (796)
Q Consensus 563 ~l~~Er~S~~~q~ssi~kER~~l~stIdaLQE 594 (796)
.+...+....++.+.....-+.+...++||++
T Consensus 222 ~l~~~~~~~~a~~~~~~~~~~G~l~R~~Al~~ 253 (301)
T PF14362_consen 222 RLDEARQAKVAEFQAIISANDGFLARLEALWE 253 (301)
T ss_pred HHHHHHHHHHHHHhHhhccCCCHHHHHHHHHH
Confidence 33333344444444333444455555555543
No 237
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=85.36 E-value=51 Score=34.41 Aligned_cols=105 Identities=13% Similarity=0.208 Sum_probs=66.5
Q ss_pred HHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003779 474 AAENSSLTDSYNQQRSVVNQLKSEMEKLQEE----IKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALR 549 (796)
Q Consensus 474 a~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E----i~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lq 549 (796)
-...+.+...+.+.+.+|.++...+-++-.+ .......+..+..|+|.+..+++.....--.|-.-...+-+-+.-
T Consensus 29 ~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~ 108 (207)
T PF05010_consen 29 KKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEG 108 (207)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3333344444444444555444444333222 222233455667777877777777766666777777777777778
Q ss_pred HHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 003779 550 LRSNELKLERQLENSQSEISSYKKKISSL 578 (796)
Q Consensus 550 LRS~eLKleKElE~l~~Er~S~~~q~ssi 578 (796)
+|.++=++.+.++.+...+.....+|.++
T Consensus 109 ~k~NEE~Lkk~~~ey~~~l~~~eqry~aL 137 (207)
T PF05010_consen 109 YKKNEETLKKCIEEYEERLKKEEQRYQAL 137 (207)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887777777777765
No 238
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=85.13 E-value=28 Score=35.34 Aligned_cols=55 Identities=25% Similarity=0.329 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHH
Q 003779 516 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKK 573 (796)
Q Consensus 516 ~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~ 573 (796)
+.|-.+...-++.--.|.-.|=.||+.|--.+..+|+.. +++|..++.|.-++-+
T Consensus 126 ~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~T---erdL~~~r~e~~r~~r 180 (182)
T PF15035_consen 126 REEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRTAT---ERDLSDMRAEFARTSR 180 (182)
T ss_pred HHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHc
Confidence 333333333344444555566699999999999998865 6889999888766543
No 239
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=85.12 E-value=31 Score=31.70 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003779 458 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 504 (796)
Q Consensus 458 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 504 (796)
.|++-|.-...-.+....+-......++.....+.+|...+..+.++
T Consensus 3 ~L~~vl~lr~~~ed~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~ 49 (141)
T TIGR02473 3 RLQKLLDLREKEEEQAKLELAKAQAEFERLETQLQQLIKYREEYEQQ 49 (141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443334333333333444444455555555555444443
No 240
>PRK11519 tyrosine kinase; Provisional
Probab=85.07 E-value=36 Score=40.30 Aligned_cols=13 Identities=31% Similarity=0.393 Sum_probs=7.8
Q ss_pred HHhhHHHHHHHHH
Q 003779 685 MIHNINALISELA 697 (796)
Q Consensus 685 ~IdSInaLisELa 697 (796)
..|.++.|.+.|.
T Consensus 506 ~~Ea~r~lrt~l~ 518 (719)
T PRK11519 506 AIEAIRSLRTSLH 518 (719)
T ss_pred HHHHHHHHHHHhh
Confidence 4566666666653
No 241
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=84.94 E-value=43 Score=33.18 Aligned_cols=13 Identities=38% Similarity=0.521 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 003779 587 STIEALQEEKKMM 599 (796)
Q Consensus 587 stIdaLQEEKklL 599 (796)
..++.||.+++.|
T Consensus 126 ~~ve~L~~ql~~L 138 (140)
T PF10473_consen 126 SAVEMLQKQLKEL 138 (140)
T ss_pred HHHHHHHHHHhhh
Confidence 4445555555444
No 242
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=84.93 E-value=33 Score=35.77 Aligned_cols=40 Identities=20% Similarity=0.330 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 565 QSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 565 ~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 604 (796)
...-...+.+..+|..||...+.-|+.||.....||...-
T Consensus 146 a~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 146 AARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344556677777777788888888888888888876543
No 243
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=84.85 E-value=36 Score=32.29 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHH
Q 003779 459 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK 495 (796)
Q Consensus 459 LqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk 495 (796)
|+-.+.......+.....-..+...-+.|...+...+
T Consensus 8 l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq 44 (132)
T PF07926_consen 8 LQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQ 44 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 244
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=84.75 E-value=3.2 Score=42.49 Aligned_cols=50 Identities=24% Similarity=0.288 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 003779 691 ALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTA 740 (796)
Q Consensus 691 aLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELlts 740 (796)
.|.-.|++||-|--+--.+.-.+++.|+.++..|..+|+.++..||-+|-
T Consensus 109 ~lql~L~eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTD 158 (179)
T PF13942_consen 109 VLQLQLSEERARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENLTD 158 (179)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 46678899999988888888899999999999999999999999999985
No 245
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=84.58 E-value=3.4 Score=40.14 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccC
Q 003779 584 DFQSTIEALQEEKKMMQSKLRKASGS 609 (796)
Q Consensus 584 ~l~stIdaLQEEKklLqSKLR~asa~ 609 (796)
++...|+.|++|.+.++.||..+-.+
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46677777788888888887765553
No 246
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=84.50 E-value=58 Score=37.40 Aligned_cols=142 Identities=11% Similarity=0.168 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--HHHhhhHHHHHHHHHHHH
Q 003779 464 EASRALSESLAAENSSLTDSYNQQ--RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN--VRLECNAADERAKILASE 539 (796)
Q Consensus 464 ~~s~~l~EsLa~ENsaLt~~yNqQ--~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDa--Aq~E~naA~ERaK~LAaE 539 (796)
+-++++++.|-.+=+.+...-|++ ...|.-.+.++++-++.+..-+.+|..|+....- -..+........-.|..|
T Consensus 215 edA~~ia~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~q 294 (434)
T PRK15178 215 KQAEFFAQRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQ 294 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHH
Confidence 467889999999999998888875 4678888888888888888888888888765532 123334455666677778
Q ss_pred HHHHHHHHHHHHhHhh-------hhHHHhhhhHHHHHHHHHHHHhHH--HhhhhHHHHHHHHHHHHHHHHHHHHh
Q 003779 540 VIGLEEKALRLRSNEL-------KLERQLENSQSEISSYKKKISSLE--KERQDFQSTIEALQEEKKMMQSKLRK 605 (796)
Q Consensus 540 VV~LEEk~lqLRS~eL-------KleKElE~l~~Er~S~~~q~ssi~--kER~~l~stIdaLQEEKklLqSKLR~ 605 (796)
.+.++-++..|++.-- -++.+++.|..++...+.++..-. .--.....+.++|.-|.+.++..+.-
T Consensus 295 La~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~s 369 (434)
T PRK15178 295 LAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWES 369 (434)
T ss_pred HHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877777777766422 223333344444444444432100 00122445558888888888877764
No 247
>PF15294 Leu_zip: Leucine zipper
Probab=84.37 E-value=47 Score=36.23 Aligned_cols=149 Identities=15% Similarity=0.202 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHhhhhHHHH
Q 003779 442 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM--EKLQEEIKVQLVELESFRNEY 519 (796)
Q Consensus 442 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~m--E~Lq~Ei~aQ~~~le~l~aEr 519 (796)
-+.|..-|++|..|=-.|.--|..-...+-..++|+..|...-|......+..+... ---.+++..=...++.++.|+
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ 206 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSEL 206 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHH
Confidence 477889999999999999999999999999999999999998888777555444310 000111111112345556777
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 003779 520 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM 599 (796)
Q Consensus 520 DaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklL 599 (796)
..+..... ++.+.|...|..--.++++.+-.---+++++++--.+ ..+|. .|...+..=.++.|.|
T Consensus 207 ek~~~d~~---~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqq----T~ay~-------NMk~~ltkKn~QiKeL 272 (278)
T PF15294_consen 207 EKALQDKE---SQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQ----TAAYR-------NMKEILTKKNEQIKEL 272 (278)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCc----cHHHH-------HhHHHHHhccHHHHHH
Confidence 66644333 3566666666665555555544433445555553333 22222 3344555555677777
Q ss_pred HHHHH
Q 003779 600 QSKLR 604 (796)
Q Consensus 600 qSKLR 604 (796)
..||+
T Consensus 273 Rkrl~ 277 (278)
T PF15294_consen 273 RKRLA 277 (278)
T ss_pred HHHhc
Confidence 77765
No 248
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.37 E-value=55 Score=40.41 Aligned_cols=32 Identities=41% Similarity=0.427 Sum_probs=18.4
Q ss_pred CCCCCccccCCccc---ccccccCCCCcCCccCCC
Q 003779 343 ASSGTLFEQTEPER---DSFMSSSSLNSMDVLGSS 374 (796)
Q Consensus 343 a~~~t~~~~tEp~k---~~~l~SsS~N~~~~lgss 374 (796)
|-+|-+.|.+=|.- -+|..+.|.|+++++-+.
T Consensus 261 a~sGq~lP~tlP~E~Vpp~~r~~rs~~sis~~~p~ 295 (1118)
T KOG1029|consen 261 AKSGQPLPKTLPPELVPPSFRSSRSANSISGLEPG 295 (1118)
T ss_pred HhcCCCCCCCCChhhcCcccccccCCCCccccccC
Confidence 34455566655554 267777776666555443
No 249
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=84.30 E-value=1.3e+02 Score=38.10 Aligned_cols=29 Identities=38% Similarity=0.461 Sum_probs=22.9
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 522 VRLECNAADERAKILASEVIGLEEKALRL 550 (796)
Q Consensus 522 Aq~E~naA~ERaK~LAaEVV~LEEk~lqL 550 (796)
|-++-.-|.||+-.|+.||.-|.||+-.|
T Consensus 316 aTldKEmAEERaesLQ~eve~lkEr~del 344 (1243)
T KOG0971|consen 316 ATLDKEMAEERAESLQQEVEALKERVDEL 344 (1243)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566678889999999998888888765
No 250
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=84.26 E-value=46 Score=33.01 Aligned_cols=7 Identities=29% Similarity=0.311 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 003779 536 LASEVIG 542 (796)
Q Consensus 536 LAaEVV~ 542 (796)
|..|+..
T Consensus 85 L~~eie~ 91 (177)
T PF07798_consen 85 LQREIEK 91 (177)
T ss_pred HHHHHHH
Confidence 3333333
No 251
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=84.19 E-value=19 Score=40.03 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHH
Q 003779 491 VNQLKSEMEKLQEEIKVQLVELESFRNE-YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 569 (796)
Q Consensus 491 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aE-rDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~ 569 (796)
|.+.+..++.|+.++..+.+.+++.++. ++.|+.++ +|-..|+..-+.=.+++.+.+..--+++-.+.... .
T Consensus 100 la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~----~R~~~L~~~g~vs~~~~~~a~~a~~~A~A~~~~a~---~ 172 (352)
T COG1566 100 LAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNEL----ERRAELAQRGVVSREELDRARAALQAAEAALAAAQ---A 172 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhH---H
Confidence 4444555666666666666666666663 66655544 35555654444445555666665555555555544 5
Q ss_pred HHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh----hccCCCc
Q 003779 570 SYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK----ASGSGKS 612 (796)
Q Consensus 570 S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~----asa~gKa 612 (796)
..++...++++++...+..|..++..++.+.--|.+ ++..|.+
T Consensus 173 ~~~~~~~~l~~~~~~~~~~v~~a~a~~~~A~l~L~~T~IrAP~dG~V 219 (352)
T COG1566 173 AQKQNLALLESEVSGAQAQVASAEAALDQAKLDLERTVIRAPVDGYV 219 (352)
T ss_pred HHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHhhCCEEECCCCceE
Confidence 667788888888888889999998888888877774 5555554
No 252
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=84.17 E-value=62 Score=34.45 Aligned_cols=121 Identities=20% Similarity=0.252 Sum_probs=72.0
Q ss_pred cccccc-CCchhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH------Hh----hhHHHHHHHHhhHHHH--
Q 003779 430 QHGFYS-TKHNEDFAALEQHIEDLTQEKFA----LQRSLEASRALSESLA------AE----NSSLTDSYNQQRSVVN-- 492 (796)
Q Consensus 430 ~~~F~s-~~~~~~faaLqqhIeDLT~EKfa----LqR~L~~s~~l~EsLa------~E----NsaLt~~yNqQ~~~v~-- 492 (796)
|.-|-. +..+++|..+.++|+.|.+-==. .+|-..+..++.+.++ .. .+.|.+-++.-++.+.
T Consensus 43 ~s~~~~v~~~~~eF~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~ 122 (243)
T cd07666 43 ASSVRGVKNRPEEFTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRC 122 (243)
T ss_pred HHhccccCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence 444432 77899999999999988653222 3444444445544432 22 4448888998888888
Q ss_pred --HHHHHHHHHHHHH-------HHHHHHhhhhHHHHHHHHHhhhHHHHHH-------HHHHHHHHHHHHHHHHH
Q 003779 493 --QLKSEMEKLQEEI-------KVQLVELESFRNEYANVRLECNAADERA-------KILASEVIGLEEKALRL 550 (796)
Q Consensus 493 --qLk~~mE~Lq~Ei-------~aQ~~~le~l~aErDaAq~E~naA~ERa-------K~LAaEVV~LEEk~lqL 550 (796)
.+...+..+...+ ..+..++.++-.+|+.+|+++....|-. -.+..||..||+++.+.
T Consensus 123 ~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a 196 (243)
T cd07666 123 CKATDKRMKGLSEQLLPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA 196 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 6666555554432 2333344455567777777766554422 24445555566666555
No 253
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=84.15 E-value=50 Score=34.67 Aligned_cols=94 Identities=20% Similarity=0.223 Sum_probs=58.4
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-----HHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHH
Q 003779 515 FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKL-----ERQLENSQSEISSYKKKISSLEKERQDFQSTI 589 (796)
Q Consensus 515 l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKl-----eKElE~l~~Er~S~~~q~ssi~kER~~l~stI 589 (796)
+..+...+++..-.+..+-+.|..++..++.++-.+.+.-..+ +.=...+-.++-++...+..+...-+.+...+
T Consensus 36 ~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~ 115 (225)
T COG1842 36 MESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQV 115 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555444333222 11122355667778888888888888888888
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 003779 590 EALQEEKKMMQSKLRKASG 608 (796)
Q Consensus 590 daLQEEKklLqSKLR~asa 608 (796)
++|......|+.|+.++-.
T Consensus 116 ~~l~~~~~~Le~Ki~e~~~ 134 (225)
T COG1842 116 EKLKKQLAALEQKIAELRA 134 (225)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888888876544
No 254
>PRK10869 recombination and repair protein; Provisional
Probab=84.12 E-value=91 Score=36.29 Aligned_cols=39 Identities=15% Similarity=0.054 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 003779 540 VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 578 (796)
Q Consensus 540 VV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi 578 (796)
...+|+|+..++.=.-|--..++.+..-++..++++..+
T Consensus 298 l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L 336 (553)
T PRK10869 298 LAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQL 336 (553)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 356677777665555554445566665556666666544
No 255
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=83.99 E-value=28 Score=41.54 Aligned_cols=37 Identities=27% Similarity=0.515 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhh
Q 003779 539 EVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKER 582 (796)
Q Consensus 539 EVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER 582 (796)
|+..++.++.+| +++|++-..+++.+++++..+.+-|
T Consensus 475 ei~~~~~~I~~L-------~~~L~e~~~~ve~L~~~l~~l~k~~ 511 (652)
T COG2433 475 EIRARDRRIERL-------EKELEEKKKRVEELERKLAELRKMR 511 (652)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444554433 5566666666666666666554433
No 256
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=83.90 E-value=76 Score=35.25 Aligned_cols=80 Identities=24% Similarity=0.303 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHH-------HHHHHHHHHHH
Q 003779 527 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQST-------IEALQEEKKMM 599 (796)
Q Consensus 527 naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~st-------IdaLQEEKklL 599 (796)
+...||.+ |-.+.+.+.+++.+|-.+---+--|.+.+..||+.|+-++.-+-.|=..+..- ||+|=.|-+-|
T Consensus 123 ~~~~ere~-lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL 201 (319)
T PF09789_consen 123 HFPHERED-LVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYL 201 (319)
T ss_pred ccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Confidence 33344443 33455666666666654444444455567777777777777665555555554 77777777778
Q ss_pred HHHHHhhc
Q 003779 600 QSKLRKAS 607 (796)
Q Consensus 600 qSKLR~as 607 (796)
+.+|.++-
T Consensus 202 ~erl~q~q 209 (319)
T PF09789_consen 202 KERLKQLQ 209 (319)
T ss_pred HHHHHHHH
Confidence 87777543
No 257
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=83.89 E-value=8.4 Score=43.49 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=35.7
Q ss_pred HhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 003779 560 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 608 (796)
Q Consensus 560 ElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa 608 (796)
.++.+..-...|..++..+..++..+...+..|++++..|+.+|.++..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 125 DLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4455555556666777777777777778888888888888888887655
No 258
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=83.60 E-value=14 Score=41.74 Aligned_cols=30 Identities=10% Similarity=0.197 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003779 490 VVNQLKSEMEKLQEEIKVQLVELESFRNEY 519 (796)
Q Consensus 490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 519 (796)
.+.+|+.++++|+.+++.....++.+.+..
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777776665555555554443
No 259
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=83.57 E-value=7.9 Score=44.58 Aligned_cols=67 Identities=25% Similarity=0.367 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHh-HHHhhhhHHHHHHHHHHHHHHH
Q 003779 533 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS-LEKERQDFQSTIEALQEEKKMM 599 (796)
Q Consensus 533 aK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ss-i~kER~~l~stIdaLQEEKklL 599 (796)
.+.|.+++-.++.++..+.++-=++.+|-++|+..-.....++.. +..+|.+++.+.+.|++|...+
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~ 128 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQL 128 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433333333332 2244444444444444444333
No 260
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=83.50 E-value=87 Score=39.52 Aligned_cols=147 Identities=22% Similarity=0.255 Sum_probs=89.2
Q ss_pred cCCCccccccccccccCCchhhHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHH
Q 003779 420 LGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQ---------EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSV 490 (796)
Q Consensus 420 ~~~dE~s~e~~~~F~s~~~~~~faaLqqhIeDLT~---------EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~ 490 (796)
...||.+++..-++-.. -.-.|++.|+.|-. -|.+..|-|.+.+..++ -..-++.||+-...
T Consensus 186 lr~~e~~Le~~~~~~~~----~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~-----y~~~~~ey~~~k~~ 256 (1072)
T KOG0979|consen 186 LREDEKSLEDKLTTKTE----KLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVE-----YKKHDREYNAYKQA 256 (1072)
T ss_pred HHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----hHhhhHHHHHHHHH
Confidence 44566666555544332 22334444443322 13344455555555553 34568899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHhhhHHHHHHHHHHH-------HHHHHHHHHHHHHhHhhh
Q 003779 491 VNQLKSEMEKLQEEIKVQLVELES-------FRNEYANVRLECNAADERAKILAS-------EVIGLEEKALRLRSNELK 556 (796)
Q Consensus 491 v~qLk~~mE~Lq~Ei~aQ~~~le~-------l~aErDaAq~E~naA~ERaK~LAa-------EVV~LEEk~lqLRS~eLK 556 (796)
+.-++.+++.|..+++-=.-..+. ..+++.-++.+|++|..+.+.... +|+.+-.+..-++-.+.+
T Consensus 257 ~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~ 336 (1072)
T KOG0979|consen 257 KDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEK 336 (1072)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888776543333222 345666778888888887766554 455555555556666666
Q ss_pred hHHHhhhhHHHHHHHHHHH
Q 003779 557 LERQLENSQSEISSYKKKI 575 (796)
Q Consensus 557 leKElE~l~~Er~S~~~q~ 575 (796)
.++.+++++..+...+.++
T Consensus 337 rq~~i~~~~k~i~~~q~el 355 (1072)
T KOG0979|consen 337 RQKRIEKAKKMILDAQAEL 355 (1072)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 6777777666666555544
No 261
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=83.50 E-value=13 Score=39.15 Aligned_cols=62 Identities=31% Similarity=0.476 Sum_probs=31.5
Q ss_pred HHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 543 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 543 LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 604 (796)
||++...+.-.--|++.+++....+.+....++..+.|-=+.+..+.|+|=||-..||.++-
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 34444333333334444444444444444444444444444666667777676555555543
No 262
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=83.07 E-value=19 Score=42.19 Aligned_cols=140 Identities=23% Similarity=0.259 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHH-------hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh------------HHHHHH
Q 003779 461 RSLEASRALSESLAA-------ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF------------RNEYAN 521 (796)
Q Consensus 461 R~L~~s~~l~EsLa~-------ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l------------~aErDa 521 (796)
|+|+-+-++-+.|-. .|+.|-++.|+--..|.+|+-++-|--.-+..+-.+.+-= -.+|.+
T Consensus 76 ~dlElaAkiGqsllk~nk~Lq~~nesLeEqv~~~~d~vvql~hels~k~ellr~ys~~~ees~~~~v~~~P~~~~~s~S~ 155 (596)
T KOG4360|consen 76 RDLELAAKIGQSLLKANKALQEDNESLEEQVDAPWDRVVQLGHELSRKDELLRGYSAAIEESEAASVCSTPLVSNESRSA 155 (596)
T ss_pred chhHHHHHHHHHHHhhhhhhhhhhhhhHhhhcchHHHHHHhhhhhhhhhhhhheeeeccccccccccccCCCccCcchhh
Confidence 556666666555544 4444555566666666666655544433333333222211 234555
Q ss_pred HHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhh----hHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 003779 522 VRLECNA-ADERAKILASEVIGLEEKALRLRSNELKLERQLEN----SQSEISSYKKKISSLEKERQDFQSTIEALQEEK 596 (796)
Q Consensus 522 Aq~E~na-A~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~----l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK 596 (796)
-|.+..+ -.++.|.+-.|.+.|-.||..+|..++--+-.-.. ...+.+-+..++.++.+|=++.-+.+.++|||.
T Consensus 156 ~~~~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~ 235 (596)
T KOG4360|consen 156 FQRELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEEN 235 (596)
T ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555444 47888888888888888888888766532211000 223334455555555555555566666666655
Q ss_pred HHHH
Q 003779 597 KMMQ 600 (796)
Q Consensus 597 klLq 600 (796)
-.|.
T Consensus 236 skLl 239 (596)
T KOG4360|consen 236 SKLL 239 (596)
T ss_pred HHHH
Confidence 4433
No 263
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=82.84 E-value=46 Score=34.90 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 003779 489 SVVNQLKSEMEKLQEEIKVQLVEL 512 (796)
Q Consensus 489 ~~v~qLk~~mE~Lq~Ei~aQ~~~l 512 (796)
+.|+=||-.+...|.||..-..++
T Consensus 10 GEIsLLKqQLke~q~E~~~K~~Ei 33 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEVNQKDSEI 33 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHH
Confidence 334444444444444433333333
No 264
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=82.59 E-value=13 Score=32.86 Aligned_cols=56 Identities=27% Similarity=0.290 Sum_probs=22.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Q 003779 480 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 535 (796)
Q Consensus 480 Lt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~ 535 (796)
|-.+|++--..+..|+.++++|+++-.+-....+.++.|-...+.+.++..+|.+.
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433333333333333333333444444444443
No 265
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=82.57 E-value=16 Score=33.33 Aligned_cols=72 Identities=24% Similarity=0.282 Sum_probs=59.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779 437 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 512 (796)
Q Consensus 437 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l 512 (796)
.+-.++..||+-|--|+.||-.--.-.-.+++-.+.|-.||-.|....+.+...+.+|++ ++.++..++..+
T Consensus 21 ~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~----~E~~~~~~l~~~ 92 (96)
T PF08647_consen 21 KKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE----TEKEFVRKLKNL 92 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHh
Confidence 455789999999999999998877777788888999999999999999999999999988 555555554443
No 266
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=82.45 E-value=87 Score=34.82 Aligned_cols=67 Identities=21% Similarity=0.292 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHH-hhhhHHHHHHHHHHHHHHHHHHHHhh
Q 003779 540 VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEK-ERQDFQSTIEALQEEKKMMQSKLRKA 606 (796)
Q Consensus 540 VV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~k-ER~~l~stIdaLQEEKklLqSKLR~a 606 (796)
|..|..+|.+|+......+.+++.++.|.=-.+..+..=.. -=.-|++-++.|-.||+.||.+|-+.
T Consensus 137 V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~ 204 (310)
T PF09755_consen 137 VNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQP 204 (310)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 44555555555554444455555555444333333321000 01124566677779999999998754
No 267
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=82.28 E-value=1.3e+02 Score=36.88 Aligned_cols=266 Identities=15% Similarity=0.207 Sum_probs=159.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH---Hhh-----hHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003779 439 NEDFAALEQHIEDLTQEKFALQRSLEA----SRALSESLA---AEN-----SSLTDSYNQQRSVVNQLKSEMEKLQEEIK 506 (796)
Q Consensus 439 ~~~faaLqqhIeDLT~EKfaLqR~L~~----s~~l~EsLa---~EN-----saLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~ 506 (796)
..+.++|.+++|+.|+.|.++..-+.. -++-+++|- .|. ++++..-.+.-..-.+|..++..+..++.
T Consensus 23 e~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~ 102 (769)
T PF05911_consen 23 EAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLA 102 (769)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999988764321 233444332 222 33343334444444455566666666555
Q ss_pred HHHHHhhhhH---HHHHHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHH
Q 003779 507 VQLVELESFR---NEYANVRLECNAADERA----KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE 579 (796)
Q Consensus 507 aQ~~~le~l~---aErDaAq~E~naA~ERa----K~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~ 579 (796)
.-.++..++. .|+++...++.+...++ ..|..-+..+|.++.-||-.-.=++|||+=-..|++=-.+....+-
T Consensus 103 ~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~ 182 (769)
T PF05911_consen 103 ESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAAS 182 (769)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4444444443 36666666666555554 4677788888888888888888889999988888888888888777
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHh-hccCCCccCCCCCccccccccccccccccc-ccccccCCccccccCCCccccc
Q 003779 580 KERQDFQSTIEALQEEKKMMQSKLRK-ASGSGKSIDFGKTAASTVNASTSTEDLAIT-DTTLDNSNQDTHDDASLPRIDA 657 (796)
Q Consensus 580 kER~~l~stIdaLQEEKklLqSKLR~-asa~gKa~~~ek~~a~~kDASTsTdDLai~-d~~~esSnqE~ldsas~qe~~v 657 (796)
|--.+-++-|-+|..|=+.|..-+|+ .++ .+ ..-+|- .+++++ ++.. ++ +..+..
T Consensus 183 kqhle~vkkiakLEaEC~rLr~l~rk~lpg--pa-a~a~mk----------~ev~~~~~~~~-----~~-----r~r~~~ 239 (769)
T PF05911_consen 183 KQHLESVKKIAKLEAECQRLRALVRKKLPG--PA-ALAQMK----------NEVESLGRDSG-----EN-----RRRRSP 239 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCC--hH-HHHHhH----------HHHHHhccccc-----cc-----cCCCCC
Confidence 76667778899999999999999986 332 11 000100 111111 1111 00 111111
Q ss_pred cCCCCCCcCcccccc-cccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHH
Q 003779 658 SGSTLLPESGRLALE-GLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLE 736 (796)
Q Consensus 658 s~~pllpe~G~~af~-~~~~~Ip~DQlR~IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLE 736 (796)
+..+ ....+. ..+.... +.++..-.=+-.++.|=..|..+|+..-..+.-.+-.=++...||-...-+|+
T Consensus 240 ~~~~-----~~~~~~~~~~~~~~----~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql~ 310 (769)
T PF05911_consen 240 SRPS-----SPHDFSPQNPQKRS----KESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQLK 310 (769)
T ss_pred Cccc-----ccccccccccccch----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 000010 1101111 22222222334567788888888888888888788888888889988888774
No 268
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=82.16 E-value=12 Score=34.06 Aligned_cols=63 Identities=21% Similarity=0.291 Sum_probs=46.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 003779 517 NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 593 (796)
Q Consensus 517 aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ 593 (796)
.|......++.+..+.+..+..+...||+++.++ ..|+....++|-++|+..+.+...+..|.
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl--------------~~Ek~kadqkyfa~mr~~d~l~~e~k~L~ 65 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRL--------------EAEKAKADQKYFAAMRSKDALDNEMKKLN 65 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4555666667778888999999999999999866 34456667777777777777776665554
No 269
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=81.95 E-value=40 Score=32.48 Aligned_cols=95 Identities=25% Similarity=0.328 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003779 440 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 519 (796)
Q Consensus 440 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 519 (796)
.-+..|+..|.-+.-|.-+|+..+++-.+-=+.|++|--.||..-.+. ..+..++..|+.+ ++.+...|
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~----~~~~~~~~~L~~e-------l~~l~~ry 84 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL----RALKKEVEELEQE-------LEELQQRY 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-------HHHHHHHH
Confidence 456778888888888888888888888877788888877777665333 2222333333332 35566678
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHH
Q 003779 520 ANVRLECNAADERAKILASEVIGLEE 545 (796)
Q Consensus 520 DaAq~E~naA~ERaK~LAaEVV~LEE 545 (796)
+++..=+.+=.|+.-.|.+.|..|-+
T Consensus 85 ~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 85 QTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 88888888888888777777776654
No 270
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=81.94 E-value=69 Score=33.33 Aligned_cols=64 Identities=20% Similarity=0.295 Sum_probs=48.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhH-HHHHHHHHhhhhc
Q 003779 684 RMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQR-LELLTAQNMANEN 747 (796)
Q Consensus 684 R~IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQR-LELltsq~ma~e~ 747 (796)
.+..+|...|.+....=..|..+|..+.....+.-++|..-...|+..+.+ .++..-+.++.+.
T Consensus 178 ~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~ 242 (264)
T PF06008_consen 178 SLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSET 242 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445889999999999999999999999999999999998888888865544 4444445554443
No 271
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=81.87 E-value=82 Score=34.16 Aligned_cols=226 Identities=15% Similarity=0.217 Sum_probs=139.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003779 439 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRS---VVNQLKSEMEKLQEEIKVQLVELESF 515 (796)
Q Consensus 439 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~---~v~qLk~~mE~Lq~Ei~aQ~~~le~l 515 (796)
.+.+..|++-+++|..-+-.-..-|....++-+.=+.|.+.+-.+|-++.. ....|+.++.+++.-+..-...-..+
T Consensus 71 ~~gi~~l~~~~~~L~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~G~~~~S~~~~~~l~~~~~k~~~~L~~A~~sD~~l 150 (337)
T cd09234 71 PDTIKNLVEAMGELSDVYQDVEAMLNEIESLLEEEELQEKEFQEAVGKRGSSIAHVTELKRELKKYKEAHEKASQSNTEL 150 (337)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 467889999999999999999999999888888888889999999987621 24456666655555444333333333
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHH
Q 003779 516 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 595 (796)
Q Consensus 516 ~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEE 595 (796)
..-|+. ...-.+.|......|+..+-..+. +-.. +. +...++++ .+...|+.|..|
T Consensus 151 ~~~~~~-------~~~~l~lL~~~~~~l~~~iPs~~~--~~~~-~~-------~~~v~~Lr-------~ll~kl~~lk~e 206 (337)
T cd09234 151 HKAMNL-------HIANLKLLAGPLDELQKKLPSPSL--LDRP-ED-------EAIEKELK-------RILNKVNEMRKQ 206 (337)
T ss_pred HHHHHH-------HHHHHHHHcCcHHHHHhhCCCccc--cCCc-cc-------HHHHHHHH-------HHHHHHHHHHHH
Confidence 333332 223344555555555555432111 1000 11 11222222 334456666677
Q ss_pred HHHHHHHHHhhccCCCccCCCCCcccccccccccccccccccccccCCccccccCCCccccccCCCCCCcCccccccccc
Q 003779 596 KKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLA 675 (796)
Q Consensus 596 KklLqSKLR~asa~gKa~~~ek~~a~~kDASTsTdDLai~d~~~esSnqE~ldsas~qe~~vs~~pllpe~G~~af~~~~ 675 (796)
++.+...||... ..+|+ .+.++... |. .|
T Consensus 207 R~~l~~~Lk~k~--------------------~~DDI----------~~~ll~~~----------------~~-~~---- 235 (337)
T cd09234 207 RRSLEQQLRDAI--------------------HEDDI----------TSKLVTTT----------------GG-DM---- 235 (337)
T ss_pred HHHHHHHHHHHh--------------------hcCCc----------hHHHHHhc----------------ch-hH----
Confidence 777777777422 23444 11111111 10 12
Q ss_pred ccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHHHH
Q 003779 676 VNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLT 739 (796)
Q Consensus 676 ~~Ip~DQlR~IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELlt 739 (796)
-.|=+.+|..-+.....|...-..++.++.+|..+-......+....+..++-+..-|+|+.+-
T Consensus 236 e~lf~~eL~k~~~~~~~l~~~~~~Q~~ll~~i~~an~~f~~~r~~~~~~~~~Re~~l~~L~~ay 299 (337)
T cd09234 236 EDLFKEELKKHDQLVNLIEQNLAAQENILKALTEANAKYAPVRKALSETKQKRESTISSLIASY 299 (337)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 2355778888888888888888889999999988888887776666667777777777777654
No 272
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=81.76 E-value=11 Score=38.29 Aligned_cols=70 Identities=23% Similarity=0.395 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHH
Q 003779 457 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 536 (796)
Q Consensus 457 faLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~L 536 (796)
++++..|.......+.|..||++|.+.-.+....+.+|+.+++.|+.+ +..+..+|.. +-..++|++.|
T Consensus 86 I~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~-------~~~~~eDY~~----L~~Im~RARkl 154 (161)
T TIGR02894 86 ISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQR-------LSTIEEDYQT----LIDIMDRARKL 154 (161)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH----HHHHHHHHHHH
Confidence 456667777777788899999998876666555555555555555554 5677777776 34567777776
Q ss_pred H
Q 003779 537 A 537 (796)
Q Consensus 537 A 537 (796)
+
T Consensus 155 ~ 155 (161)
T TIGR02894 155 A 155 (161)
T ss_pred H
Confidence 5
No 273
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=81.75 E-value=56 Score=36.04 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=22.0
Q ss_pred HHhhHHHHHHhHHHHHHHHHHHhHHH
Q 003779 711 LAQSSKLKDLNNELSRKLEHQTQRLE 736 (796)
Q Consensus 711 sr~~~dLk~lN~ELsRKLE~qtQRLE 736 (796)
+--++.||.+|-||..|..++..||-
T Consensus 277 s~l~dQLK~qNQEL~ski~ELE~rLq 302 (307)
T PF10481_consen 277 SQLLDQLKAQNQELRSKINELELRLQ 302 (307)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 34578999999999999999888874
No 274
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=81.43 E-value=1.5e+02 Score=37.74 Aligned_cols=159 Identities=18% Similarity=0.311 Sum_probs=84.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-------HHHhhhHHHHH-----H--H------------
Q 003779 436 TKHNEDFAALEQHIEDLTQEKFALQRSLEASR----ALSES-------LAAENSSLTDS-----Y--N------------ 485 (796)
Q Consensus 436 ~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~----~l~Es-------La~ENsaLt~~-----y--N------------ 485 (796)
.+-+++++++.+-|..|+++.-.-.|.+.... .+... +..-++-|+++ + |
T Consensus 230 ~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl~~~~ 309 (1141)
T KOG0018|consen 230 EKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKRLEEIE 309 (1141)
T ss_pred hhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHHHHhh
Confidence 44567888888888888887777777766555 11111 11222222221 0 0
Q ss_pred ----HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH----hhhHHHHHHH-----------------------
Q 003779 486 ----QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL----ECNAADERAK----------------------- 534 (796)
Q Consensus 486 ----qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~----E~naA~ERaK----------------------- 534 (796)
........++.++++|+.++.+=-.+-+.|..|...-.+ +.|-.+++.+
T Consensus 310 k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~~~el~~ln~~ 389 (1141)
T KOG0018|consen 310 KDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEALEELEVLNRN 389 (1141)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 001123345566666666666655555555555544444 3333333321
Q ss_pred ---------HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHH
Q 003779 535 ---------ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 594 (796)
Q Consensus 535 ---------~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQE 594 (796)
.+-.=++.||+++.+++-+--++.+....+..-+.++.+.++.+-.+=+.++..+.-+-+
T Consensus 390 ~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~ 458 (1141)
T KOG0018|consen 390 MRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEE 458 (1141)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhh
Confidence 111225667777777666665666666666666666666666655555555544443333
No 275
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=81.14 E-value=7.5 Score=42.00 Aligned_cols=49 Identities=22% Similarity=0.298 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 003779 528 AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 576 (796)
Q Consensus 528 aA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~s 576 (796)
.+.++.+....++..|++++..|+..-=+..++...+..++..+..++.
T Consensus 232 ~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~ 280 (344)
T PF12777_consen 232 EAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLE 280 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3333333334444444444443333333333333333333333333333
No 276
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=81.10 E-value=94 Score=34.33 Aligned_cols=88 Identities=20% Similarity=0.342 Sum_probs=44.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 003779 517 NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 596 (796)
Q Consensus 517 aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK 596 (796)
+|.+..+-.+.+-.++.+.|+.|.-.-=+++..+...-=++++++.+++.++--+..++..+-.+...++..|.-++...
T Consensus 165 aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~i 244 (294)
T COG1340 165 AEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKI 244 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444455555554444444444444444444455555555555555555555555555555555555555
Q ss_pred HHHHHHHH
Q 003779 597 KMMQSKLR 604 (796)
Q Consensus 597 klLqSKLR 604 (796)
+.|..+.+
T Consensus 245 k~l~~~~~ 252 (294)
T COG1340 245 KALRAKEK 252 (294)
T ss_pred HHHHHHHH
Confidence 55544444
No 277
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=81.08 E-value=76 Score=33.25 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHH
Q 003779 490 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILAS 538 (796)
Q Consensus 490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAa 538 (796)
......++-.+|++++.....+|+..+..|+.+..++..|.......-.
T Consensus 106 ~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a~~ 154 (237)
T cd07657 106 AKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEAVV 154 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455566778888888888889999999998888888888766544
No 278
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=80.99 E-value=57 Score=34.45 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003779 489 SVVNQLKSEMEKLQEEIKVQLVELESFRNEY 519 (796)
Q Consensus 489 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 519 (796)
..+.+++.+|+.|.+|..++.-+|-.+...+
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DI 62 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDI 62 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666555555555544443
No 279
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=80.80 E-value=1.9e+02 Score=37.63 Aligned_cols=84 Identities=20% Similarity=0.204 Sum_probs=48.2
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003779 435 STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES 514 (796)
Q Consensus 435 s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~ 514 (796)
..+...+++.+..+...+..|+...+-.++.+-+=.++|-.+-..|...-+...+.+..++..+-.+..+...-+.+.+.
T Consensus 845 ~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~ 924 (1294)
T KOG0962|consen 845 LQKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEE 924 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHH
Confidence 33445566666666666666666666555555555566666666666666666666666555554444444444444444
Q ss_pred hHHH
Q 003779 515 FRNE 518 (796)
Q Consensus 515 l~aE 518 (796)
++++
T Consensus 925 ~k~~ 928 (1294)
T KOG0962|consen 925 LKNE 928 (1294)
T ss_pred HHHH
Confidence 4444
No 280
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=80.58 E-value=1.2e+02 Score=35.03 Aligned_cols=78 Identities=22% Similarity=0.333 Sum_probs=35.7
Q ss_pred HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHH-HHHHHH-HHHHH------HHhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Q 003779 468 ALSESLAAENSSLTDSYNQQRSVVNQLKSEM-EKLQEE-IKVQL------VELESFRNEYANVRLECNAADERAKILASE 539 (796)
Q Consensus 468 ~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~m-E~Lq~E-i~aQ~------~~le~l~aErDaAq~E~naA~ERaK~LAaE 539 (796)
+++..+...+.+-...|.+-+..+-+-|+.+ +.|+.. ..... ++++.++.|++.++.+++....+...|-.|
T Consensus 224 ~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e 303 (511)
T PF09787_consen 224 ELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAE 303 (511)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555566665544444444433 223331 11011 125555555555555555555555444444
Q ss_pred HHHHHH
Q 003779 540 VIGLEE 545 (796)
Q Consensus 540 VV~LEE 545 (796)
...+|.
T Consensus 304 ~~d~e~ 309 (511)
T PF09787_consen 304 LQDLEA 309 (511)
T ss_pred HHHHHH
Confidence 444443
No 281
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=80.38 E-value=36 Score=34.49 Aligned_cols=57 Identities=14% Similarity=0.255 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhhhHHHHH--------------HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 003779 464 EASRALSESLAAENSSLTDS--------------YNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 520 (796)
Q Consensus 464 ~~s~~l~EsLa~ENsaLt~~--------------yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD 520 (796)
..-.++.++|.+|+=--+++ .+.....+..|+.+++.++.+|..-...++..+.+|.
T Consensus 30 ~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~ 100 (188)
T PF03962_consen 30 MSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGRE 100 (188)
T ss_pred hhHHHHHHHHhccccchhhhccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44578899999987554443 4455555566666666665555544444444444443
No 282
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=80.35 E-value=77 Score=38.13 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=11.2
Q ss_pred ccccchhhHHHHHhhHHHHHHHHH
Q 003779 674 LAVNIPHDQMRMIHNINALISELA 697 (796)
Q Consensus 674 ~~~~Ip~DQlR~IdSInaLisELa 697 (796)
.+--|| |.|+-|-..+.++.
T Consensus 417 ~~Giip----ral~~lF~~~~~~~ 436 (670)
T KOG0239|consen 417 DPGIIP----RALEKLFRTITSLK 436 (670)
T ss_pred cCCccH----HHHHHHHHHHHhhc
Confidence 334677 66666665555443
No 283
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.33 E-value=57 Score=38.96 Aligned_cols=164 Identities=19% Similarity=0.199 Sum_probs=90.5
Q ss_pred ccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003779 428 ENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV 507 (796)
Q Consensus 428 e~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~a 507 (796)
+-||+=|=-.++-=-+++|.||.-|-..|-.-...|+-.++=-+.+-.--+.|.+||-+-.-.-+-|-..|.+|.+-.
T Consensus 569 ~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~-- 646 (741)
T KOG4460|consen 569 QVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSF-- 646 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc--
Confidence 446665555555555667777777665554433344444444444444445566666543333333333333333311
Q ss_pred HHHHhhh-hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHH
Q 003779 508 QLVELES-FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQ 586 (796)
Q Consensus 508 Q~~~le~-l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~ 586 (796)
...+-. ..+|||= .+|..-+-...+.|++-++.+..+..+-|+- ..+-++. .-+.+|+.-++.|..++
T Consensus 647 -~~~lp~l~~AErdF-k~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H---~~~v~~a------l~K~~Y~l~~~Q~~~iq 715 (741)
T KOG4460|consen 647 -HSELPVLSDAERDF-KKELQLIPDQLRHLGNAIETVTMKKDKQQQH---MEKVLSA------LPKPTYILSAYQRKCIQ 715 (741)
T ss_pred -cccCCcchhHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhh------ccCCcccccHHHHHHHH
Confidence 111122 2677775 4566777777777777777766666543221 1222222 22566777788888899
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003779 587 STIEALQEEKKMMQSKLR 604 (796)
Q Consensus 587 stIdaLQEEKklLqSKLR 604 (796)
+++..|-++....-.+++
T Consensus 716 siL~~L~~~i~~~~k~VK 733 (741)
T KOG4460|consen 716 SILKELGEHIREMVKQVK 733 (741)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999888887765554444
No 284
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=80.24 E-value=81 Score=33.04 Aligned_cols=32 Identities=34% Similarity=0.519 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 444 ALEQHIEDLTQEKFALQRSLEASRALSESLAA 475 (796)
Q Consensus 444 aLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ 475 (796)
.|..-|.+|-..=-++|-+|+.+..+-+.|.+
T Consensus 40 ~L~~e~~~L~~q~~s~Qqal~~aK~l~eEled 71 (193)
T PF14662_consen 40 QLAEEITDLRKQLKSLQQALQKAKALEEELED 71 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34344444444444555555555544444443
No 285
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=80.09 E-value=13 Score=34.79 Aligned_cols=81 Identities=22% Similarity=0.337 Sum_probs=45.9
Q ss_pred chhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003779 438 HNEDFAALEQHIEDLTQEKFA-----------LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 506 (796)
Q Consensus 438 ~~~~faaLqqhIeDLT~EKfa-----------LqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~ 506 (796)
..-||++||.||..+|-=++. +.+-+.=+|=..|=|-.-.+.|.+........+.++..+.++|+..++
T Consensus 25 ~~~Di~~Lq~~i~~vtf~~l~~e~~~~~~dp~~~klfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~ 104 (118)
T PF13815_consen 25 RELDIDTLQENIENVTFCDLENEDCQHFVDPNFLKLFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLK 104 (118)
T ss_pred hccCHHHHHHHHHhcceeccChhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999977643322 223344445555555555555555555555555555555555555555
Q ss_pred HHHHHhhhhHHH
Q 003779 507 VQLVELESFRNE 518 (796)
Q Consensus 507 aQ~~~le~l~aE 518 (796)
.+..++..++.|
T Consensus 105 ~~~~~~k~lk~E 116 (118)
T PF13815_consen 105 KQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHh
Confidence 555555555444
No 286
>PRK10698 phage shock protein PspA; Provisional
Probab=80.08 E-value=79 Score=32.82 Aligned_cols=46 Identities=11% Similarity=0.275 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 003779 563 NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 608 (796)
Q Consensus 563 ~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa 608 (796)
.|..++......+..+...-..|...|..+...+..|-.|.+.+.+
T Consensus 103 ~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a 148 (222)
T PRK10698 103 TLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASS 148 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444433333444444444444444444444444333
No 287
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=79.93 E-value=71 Score=32.23 Aligned_cols=40 Identities=10% Similarity=0.103 Sum_probs=23.8
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 003779 434 YSTKHNEDFAALEQHIEDLTQEKFA----LQRSLEASRALSESL 473 (796)
Q Consensus 434 ~s~~~~~~faaLqqhIeDLT~EKfa----LqR~L~~s~~l~EsL 473 (796)
--+..+.+|..+...|+.|..-==. .+|-+.+.++++..+
T Consensus 8 ~~~~~d~eF~e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~ 51 (200)
T cd07624 8 LLKNRSPEFDKMNEYLTLFGEKLGTIERISQRIHKERIEYFDEL 51 (200)
T ss_pred hhcCCCccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677899999999888643222 234444444444444
No 288
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=79.85 E-value=11 Score=33.80 Aligned_cols=51 Identities=22% Similarity=0.258 Sum_probs=38.5
Q ss_pred HHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 003779 543 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 593 (796)
Q Consensus 543 LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ 593 (796)
++-+..+||.+--..++||.-.--+.+...+=+--+.|||++.+..+..||
T Consensus 20 ~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~l~ 70 (70)
T PF08606_consen 20 LMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAELQ 70 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhcC
Confidence 333445566666666788888777778888888889999999998887765
No 289
>PRK11519 tyrosine kinase; Provisional
Probab=79.71 E-value=1.4e+02 Score=35.69 Aligned_cols=12 Identities=33% Similarity=0.387 Sum_probs=5.2
Q ss_pred CCCCcccccccC
Q 003779 214 PQNSVSTLFQSK 225 (796)
Q Consensus 214 ~q~s~~~~~q~~ 225 (796)
|.=.+++..|++
T Consensus 54 PvY~a~a~l~Ie 65 (719)
T PRK11519 54 PIYSADALVQIE 65 (719)
T ss_pred ceeeeeEEEEEc
Confidence 344444444433
No 290
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=79.61 E-value=12 Score=39.62 Aligned_cols=41 Identities=27% Similarity=0.417 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHH-------HHHHHH
Q 003779 564 SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKM-------MQSKLR 604 (796)
Q Consensus 564 l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKkl-------LqSKLR 604 (796)
+...|++++++...++.|-..+..++..||.|.+. |..|+|
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888877777777777777777766654 455666
No 291
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=79.54 E-value=25 Score=41.99 Aligned_cols=70 Identities=23% Similarity=0.408 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHh---HhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCccC
Q 003779 538 SEVIGLEEKALRLRS---NELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSID 614 (796)
Q Consensus 538 aEVV~LEEk~lqLRS---~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa~~ 614 (796)
+|+..|+++|-++|- .+++-.++++.+..++..+++++.--.+.+.+|...++.| -|+|.+...|+..+
T Consensus 450 ~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l--------~k~~~lE~sG~g~p 521 (652)
T COG2433 450 REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAEL--------RKMRKLELSGKGTP 521 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhhhhcCCCcc
Confidence 555556666555542 3444566677777777777777775544444444433332 23555556666534
Q ss_pred C
Q 003779 615 F 615 (796)
Q Consensus 615 ~ 615 (796)
.
T Consensus 522 v 522 (652)
T COG2433 522 V 522 (652)
T ss_pred e
Confidence 3
No 292
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=79.46 E-value=89 Score=33.06 Aligned_cols=134 Identities=14% Similarity=0.198 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHH-H-----------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 003779 457 FALQRSLEASRALSESLAAENSSLTDSYNQQRSV-V-----------NQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 524 (796)
Q Consensus 457 faLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~-v-----------~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~ 524 (796)
+.+.++-.-.-.=++.+|++++.+.+..+-+-.. + ..+-.+.+.++.++......|+..+..|+.+-.
T Consensus 63 ~t~~~aw~~~l~e~~~~A~~H~~~~~~L~~~v~~~l~~~~~~~k~~rK~~~~~~~k~qk~~~~~~~~lekaKk~Y~~ack 142 (253)
T cd07676 63 YTSCRAFLMTLNEMNDYAGQHEVISENLASQIIVELTRYVQELKQERKSHFHDGRKAQQHIETCWKQLESSKRRFERDCK 142 (253)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444556677777776666443211 1 112234567788888888888888999999888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhh-----hhHHHHHHHHH
Q 003779 525 ECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKER-----QDFQSTIEALQ 593 (796)
Q Consensus 525 E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER-----~~l~stIdaLQ 593 (796)
+...|..+.....+....=..++..+|..--+...+++..+ ..|..++.-+.+.- ..|-..+|.||
T Consensus 143 e~E~A~~~~~ka~~d~~~sk~~~eK~k~~~~~~~~~~e~aK---n~Y~~~l~~~N~~q~~~Y~e~mp~vfd~lQ 213 (253)
T cd07676 143 EADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSK---AEYSSYLQKFNKEQHEHYYTHIPNIFQKIQ 213 (253)
T ss_pred HHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 88888876644432211111122222222222222333222 33444444443332 44777888888
No 293
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=79.42 E-value=1.1e+02 Score=34.28 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=29.1
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 512 LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 550 (796)
Q Consensus 512 le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqL 550 (796)
++.+..||..++.++.++.++-+.+..-|-.+..++.++
T Consensus 268 le~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~I 306 (359)
T PF10498_consen 268 LEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEI 306 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 466677888888888888888888877777766665543
No 294
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=79.26 E-value=56 Score=40.65 Aligned_cols=97 Identities=20% Similarity=0.244 Sum_probs=54.2
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 003779 476 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL 555 (796)
Q Consensus 476 ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eL 555 (796)
+|..++.+ +.....|.-||.++++|+.++.... -.. +.+|+..|-+++.++-+..=
T Consensus 318 knk~vvN~-d~~~~~~~~lK~ql~~l~~ell~~~--~~~---------------------~~~ei~sl~~e~~~l~~~~d 373 (913)
T KOG0244|consen 318 KNKPVVNQ-DPKSFEMLKLKAQLEPLQVELLSKA--GDE---------------------LDAEINSLPFENVTLEETLD 373 (913)
T ss_pred cccccccc-cHHHHHHHHHHHHHHHHHHHHHhhc--ccc---------------------chhHHhhhhhhhhhhhhhHH
Confidence 45555555 5566677777777777777654443 000 33333333333333333222
Q ss_pred hhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 003779 556 KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 596 (796)
Q Consensus 556 KleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK 596 (796)
++..+.....+.+.+--.+..-.+++++.++.+++.+++.+
T Consensus 374 ~~~~e~~e~~s~~s~~~~~~~~~~~~k~k~~~~~~~~~~~~ 414 (913)
T KOG0244|consen 374 ALLQEKGEERSTLSSKSLKLTGAEKEKDKLRRRTDSCMNLL 414 (913)
T ss_pred HHhcchhhhhhhhhHHHHhcchhhhhHHHHHHHHHHHHHHH
Confidence 33333334444445555666677888888888888777654
No 295
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=79.20 E-value=57 Score=30.80 Aligned_cols=46 Identities=13% Similarity=0.259 Sum_probs=33.3
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 003779 477 NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 522 (796)
Q Consensus 477 NsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaA 522 (796)
.+.+...|+.-......|+...+.++.+++....++..+..++...
T Consensus 24 ~~~v~~~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~ 69 (158)
T PF03938_consen 24 VDKVFQESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQ 69 (158)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777888888888887777777777776666654
No 296
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=79.06 E-value=85 Score=32.61 Aligned_cols=55 Identities=18% Similarity=0.208 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 457 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE 511 (796)
Q Consensus 457 faLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~ 511 (796)
..|..+...-....+.+|..+..+....|+-...+..|..+|++.+..+..+...
T Consensus 61 gs~~~a~~~il~~~e~lA~~h~~~a~~L~~~~~eL~~l~~~~e~~RK~~ke~~~k 115 (234)
T cd07652 61 GSFSNAYHSSLEFHEKLADNGLRFAKALNEMSDELSSLAKTVEKSRKSIKETGKR 115 (234)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4677777777888888888888888888877777777778887777766555443
No 297
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=79.02 E-value=47 Score=36.45 Aligned_cols=7 Identities=14% Similarity=0.145 Sum_probs=3.8
Q ss_pred hccCCCc
Q 003779 606 ASGSGKS 612 (796)
Q Consensus 606 asa~gKa 612 (796)
++..|.+
T Consensus 220 AP~dG~V 226 (390)
T PRK15136 220 SPMTGYV 226 (390)
T ss_pred CCCCeEE
Confidence 5555554
No 298
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=78.77 E-value=53 Score=30.09 Aligned_cols=52 Identities=23% Similarity=0.269 Sum_probs=23.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHH
Q 003779 486 QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILA 537 (796)
Q Consensus 486 qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LA 537 (796)
.+...+..+...+.+-+.++......|..-...|+....++.+-..||..-+
T Consensus 18 ~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a 69 (126)
T PF13863_consen 18 TKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRA 69 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3333344444444444444444444444444445555555554444444333
No 299
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=78.47 E-value=53 Score=34.65 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH----hhccCCCc
Q 003779 585 FQSTIEALQEEKKMMQSKLR----KASGSGKS 612 (796)
Q Consensus 585 l~stIdaLQEEKklLqSKLR----~asa~gKa 612 (796)
+...++.++.+.+.++..|. .++-.|.+
T Consensus 183 ~~~~l~~~~~~l~~a~~~l~~~~I~AP~dG~V 214 (331)
T PRK03598 183 AKASLAQAQAALAQAELNLQDTELIAPSDGTI 214 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCEEECCCCeEE
Confidence 33444445555555555654 35556655
No 300
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=77.79 E-value=25 Score=37.11 Aligned_cols=74 Identities=15% Similarity=0.172 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHH
Q 003779 492 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY 571 (796)
Q Consensus 492 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~ 571 (796)
++..++.++++.....+.- +.+|-|...-+.+.+.+..++.+.+...++++...+ +|+.+++..|.+++
T Consensus 130 ~~~~~~~~~lk~~~~~~~~----~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al-------~Kq~e~~~~EydrL 198 (216)
T KOG1962|consen 130 EKAMKENEALKKQLENSSK----LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDAL-------KKQSEGLQDEYDRL 198 (216)
T ss_pred HHHHHHHHHHHHhhhcccc----hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHcccHHHHH
Confidence 4444444444443322221 344444444444555555555555555555555433 45555555555555
Q ss_pred HHHHH
Q 003779 572 KKKIS 576 (796)
Q Consensus 572 ~~q~s 576 (796)
-.+++
T Consensus 199 lee~~ 203 (216)
T KOG1962|consen 199 LEEYS 203 (216)
T ss_pred HHHHH
Confidence 44444
No 301
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.69 E-value=2e+02 Score=36.06 Aligned_cols=87 Identities=17% Similarity=0.292 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHH----------HHHHHHHHHHHHHHhHhhhhHH
Q 003779 490 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILA----------SEVIGLEEKALRLRSNELKLER 559 (796)
Q Consensus 490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LA----------aEVV~LEEk~lqLRS~eLKleK 559 (796)
...+|+-+.|+|+.+++-+...-.+++.+++..+-++..+..-...+. .|.-.+..+..++.-++--+.+
T Consensus 679 ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~ 758 (970)
T KOG0946|consen 679 MEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTK 758 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666666666666666555553333222222 2333344444444444444555
Q ss_pred HhhhhHHHHHHHHHHHH
Q 003779 560 QLENSQSEISSYKKKIS 576 (796)
Q Consensus 560 ElE~l~~Er~S~~~q~s 576 (796)
++++...-+.+..+..+
T Consensus 759 ~L~k~~~~~es~k~~~~ 775 (970)
T KOG0946|consen 759 ELNKKNADIESFKATQR 775 (970)
T ss_pred HHHhhhHHHHHHHHHHh
Confidence 55555555555554444
No 302
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=77.59 E-value=59 Score=33.32 Aligned_cols=60 Identities=33% Similarity=0.388 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 003779 534 KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 607 (796)
Q Consensus 534 K~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~as 607 (796)
+.+-.++..||.++++| +++...+.++.....+++. .+.+.++++.++...+.-+...+.
T Consensus 127 ~~~e~~i~~Le~ki~el-------~~~~~~~~~~ke~~~~ei~-------~lks~~~~l~~~~~~~e~~F~~~~ 186 (190)
T PF05266_consen 127 KELESEIKELEMKILEL-------QRQAAKLKEKKEAKDKEIS-------RLKSEAEALKEEIENAELEFQSVA 186 (190)
T ss_pred hhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555544 3333334434444444444 455666777777777766666543
No 303
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=77.21 E-value=87 Score=32.82 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q 003779 496 SEMEKLQEEIKVQLVELESFRNEYANVRLEC 526 (796)
Q Consensus 496 ~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~ 526 (796)
..+++++.++......++..+++++.|+.++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~ 120 (327)
T TIGR02971 90 RAAAKLFKDVAAQQATLNRLEAELETAQREV 120 (327)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444555555555544443
No 304
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=77.17 E-value=1.6e+02 Score=34.72 Aligned_cols=25 Identities=32% Similarity=0.324 Sum_probs=14.0
Q ss_pred CCCcccccCCcc-ccccccCCCCCCC
Q 003779 321 ATNKFTLGKSRA-SFLDSLNVPRASS 345 (796)
Q Consensus 321 ~~~et~~~rSRp-SFLDSlnV~Ra~~ 345 (796)
+.-+++.+-+-| |||+-=||.|--.
T Consensus 192 ~a~esaLn~~QpqSFl~~en~~~~ve 217 (527)
T PF15066_consen 192 TAKESALNPSQPQSFLYKENVCRDVE 217 (527)
T ss_pred hhhhhccCCCCCcchhhhcccccccc
Confidence 333444444443 6887777776553
No 305
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=77.05 E-value=40 Score=36.93 Aligned_cols=111 Identities=20% Similarity=0.187 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh------
Q 003779 441 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES------ 514 (796)
Q Consensus 441 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~------ 514 (796)
|=++|...||=|+.+=+.|+-.|...++-.+....|-+.+-+.+-.....+..|+..+.++.+-|+-+.+++-.
T Consensus 106 ek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~~~~ngd 185 (302)
T PF09738_consen 106 EKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKHGLVLVPDATNGD 185 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCCCCCCCc
Confidence 44555566666666666666666655555556666677777777777788888888888888888888777654
Q ss_pred ---------------hHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 515 ---------------FRNEYANVRLEC--NAADERAKILASEVIGLEEKALRLR 551 (796)
Q Consensus 515 ---------------l~aErDaAq~E~--naA~ERaK~LAaEVV~LEEk~lqLR 551 (796)
+.-|-..+.-.+ .--+.|.|+|+-|-..|.++|..|+
T Consensus 186 ~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L~~qv~klk 239 (302)
T PF09738_consen 186 TSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKKLADEKEELLEQVRKLK 239 (302)
T ss_pred cccCccccCCCcccccchhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333332222 2236799999999999988888775
No 306
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=77.02 E-value=1.2e+02 Score=33.38 Aligned_cols=120 Identities=18% Similarity=0.205 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh----H
Q 003779 446 EQHIEDLTQEKFALQRSLEASRALS-----ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF----R 516 (796)
Q Consensus 446 qqhIeDLT~EKfaLqR~L~~s~~l~-----EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l----~ 516 (796)
=||.|..-++=+.|=..|+.-.+=. .+|.+.-..+-+.--+|...|.+|+++++.|+.+|+.+...+..- .
T Consensus 40 yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~ 119 (301)
T PF06120_consen 40 YQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITEN 119 (301)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 3666666666666666655544332 345555555666666777777777777777777775443322211 1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhH
Q 003779 517 NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ 565 (796)
Q Consensus 517 aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~ 565 (796)
.-..+......+++++...+..|+...++++.+..+.--..++.+..+.
T Consensus 120 ~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~~ 168 (301)
T PF06120_consen 120 GYIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLNDLT 168 (301)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112223344567777777777777777777666554444444444433
No 307
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=76.89 E-value=1e+02 Score=36.50 Aligned_cols=254 Identities=21% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHH--------HHHHHHHHHHHhh
Q 003779 445 LEQH---IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEK--------LQEEIKVQLVELE 513 (796)
Q Consensus 445 Lqqh---IeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~--------Lq~Ei~aQ~~~le 513 (796)
|+-| |.+||+|.+.-++|-... ...+...|-..+-++|+---..|.+|+.-+++ |..|++++.+...
T Consensus 227 lE~rW~~lq~l~Ee~l~al~gq~ev--~~~~~~~E~~~l~eq~~~ld~AV~~Ltk~v~~~q~sL~kvl~aE~kaR~~k~~ 304 (531)
T PF15450_consen 227 LESRWQKLQELTEERLRALQGQQEV--GLGGIQSEESKLLEQCRKLDEAVAQLTKFVQQNQKSLNKVLNAEQKARDAKEK 304 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhh--hhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhH
Q ss_pred hh---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHH
Q 003779 514 SF---RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE 590 (796)
Q Consensus 514 ~l---~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stId 590 (796)
.+ ..|.....++.-.|.-.+-.++.++-..+-.+++-+++-| ...+..+++.=-+|-.-|.
T Consensus 305 ~e~sk~eeL~~~L~~~lea~q~agkla~Qe~~~~ld~LqEksqil----------------e~sv~~l~~~lkDLd~~~~ 368 (531)
T PF15450_consen 305 LEESKAEELATKLQENLEAMQLAGKLAQQETQSELDLLQEKSQIL----------------EDSVAELMRQLKDLDDHIL 368 (531)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH----HHHHHHHHhhccCCCccCCCCCcccccccccccccccccccccccCCccccccCCCccccccCCCCCCcC
Q 003779 591 ALQEEK----KMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPES 666 (796)
Q Consensus 591 aLQEEK----klLqSKLR~asa~gKa~~~ek~~a~~kDASTsTdDLai~d~~~esSnqE~ldsas~qe~~vs~~pllpe~ 666 (796)
+|+-.. +.|-.||..+-..-.. +-..+-++|.-.+...+.--.++ .+.+. ..|
T Consensus 369 aLs~rld~qEqtL~~rL~e~~~e~~~-----------~~r~~lekl~~~q~e~~~~l~~v-~eKVd------~Lp----- 425 (531)
T PF15450_consen 369 ALSWRLDLQEQTLNLRLSEAKNEWES-----------DERKSLEKLDQWQNEMEKHLKEV-QEKVD------SLP----- 425 (531)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH-HHHHH------hhh-----
Q ss_pred cccccccccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHhHHHHH-HHHHHHhHHHHHHHHHhh
Q 003779 667 GRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQ-SSKLKDLNNELSR-KLEHQTQRLELLTAQNMA 744 (796)
Q Consensus 667 G~~af~~~~~~Ip~DQlR~IdSInaLisELa~EReravsaLa~esr~-~~dLk~lN~ELsR-KLE~qtQRLELltsq~ma 744 (796)
.++ .+.++++. -+-...++.|+.-+..|+..|.+++.++.. ++.++-++-+--- |+-+.+..|- |.|-|-
T Consensus 426 qqI--~~vs~Kc~----~~Ksd~d~kIdtE~k~R~~eV~~vRqELa~lLssvQ~~~e~~~~rkiaeiqg~l~--~~qi~k 497 (531)
T PF15450_consen 426 QQI--EEVSDKCD----LHKSDSDTKIDTEGKAREREVGAVRQELATLLSSVQLLKEDNPGRKIAEIQGKLA--TNQIMK 497 (531)
T ss_pred HHH--HHHHHHHH----HHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHH--HHHHHH
Q ss_pred hhc
Q 003779 745 NEN 747 (796)
Q Consensus 745 ~e~ 747 (796)
-||
T Consensus 498 le~ 500 (531)
T PF15450_consen 498 LEN 500 (531)
T ss_pred HHH
No 308
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=76.55 E-value=1.6e+02 Score=34.43 Aligned_cols=65 Identities=23% Similarity=0.358 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 527 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 527 naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 604 (796)
|+-+-..++|..+-+.-+--+-|||-.-+.++..+|.-.+- + =-.|-+-+|.|-.||+-||.||-
T Consensus 161 nKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEa---l----------vN~LwKrmdkLe~ekr~Lq~KlD 225 (552)
T KOG2129|consen 161 NKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEA---L----------VNSLWKRMDKLEQEKRYLQKKLD 225 (552)
T ss_pred HHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHH---H----------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455555555555554444556666655555555443311 1 12466888999999999999994
No 309
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=76.37 E-value=1.2e+02 Score=35.76 Aligned_cols=51 Identities=24% Similarity=0.383 Sum_probs=27.9
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHhhhhHHHHHH
Q 003779 471 ESLAAENSSLTDSYNQQRSVVNQLKSEM-------EKLQEEIKVQLVELESFRNEYAN 521 (796)
Q Consensus 471 EsLa~ENsaLt~~yNqQ~~~v~qLk~~m-------E~Lq~Ei~aQ~~~le~l~aErDa 521 (796)
++|-.---+|+++-|---+.|+++|.++ ++|+.||.--..+++++++-+|.
T Consensus 298 ~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~ 355 (622)
T COG5185 298 KTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDE 355 (622)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3455555667777777767777766654 34444444444444444444443
No 310
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=76.27 E-value=35 Score=39.59 Aligned_cols=25 Identities=28% Similarity=0.201 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhHhhhhHHHhhh
Q 003779 539 EVIGLEEKALRLRSNELKLERQLEN 563 (796)
Q Consensus 539 EVV~LEEk~lqLRS~eLKleKElE~ 563 (796)
|+..+..++.++|..--|+||++|.
T Consensus 303 e~e~~rkelE~lR~~L~kAEkele~ 327 (575)
T KOG4403|consen 303 ENETSRKELEQLRVALEKAEKELEA 327 (575)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444445666677777777777764
No 311
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=76.22 E-value=66 Score=39.01 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=14.8
Q ss_pred ccccccccceeEeecCCCCCCCCCcc
Q 003779 32 HDQHHLEADRVRVTDLDGAGTSDGPD 57 (796)
Q Consensus 32 ~~~~~le~~~vr~~d~dgag~sdg~~ 57 (796)
.+...|+.++-++.|.+|- +.|+..
T Consensus 121 ~~~~~l~~~i~~~id~~g~-i~d~aS 145 (771)
T TIGR01069 121 ITLPPLENDIIACIDDDGK-VKDGAS 145 (771)
T ss_pred CCcHHHHHHHHHHhCCCCE-ECCCcC
Confidence 3455567777777777663 344433
No 312
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.04 E-value=1.9e+02 Score=34.95 Aligned_cols=127 Identities=16% Similarity=0.218 Sum_probs=74.5
Q ss_pred HHHHHHHHhhhHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 003779 468 ALSESLAAENSSLTDSYNQQRSVV-NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEK 546 (796)
Q Consensus 468 ~l~EsLa~ENsaLt~~yNqQ~~~v-~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk 546 (796)
+--+-|-+--+-+-++|=...+.| .++++-+.+|+..++.|+-.+.-...||....-....--+|-.+..---+.|+.+
T Consensus 559 E~~~lL~~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~ 638 (741)
T KOG4460|consen 559 ECLQLLSRATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNR 638 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 333444444555566676655555 5788999999999999999988888887765444433334443333334567778
Q ss_pred HHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHH
Q 003779 547 ALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 597 (796)
Q Consensus 547 ~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKk 597 (796)
|.+||+.-= .++-.+...-.-+.+++..|-++=++|+..||++.--++
T Consensus 639 ~~~L~~~~~---~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~ 686 (741)
T KOG4460|consen 639 MKKLLHSFH---SELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKD 686 (741)
T ss_pred HHHHHhccc---ccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 888876311 111122222233555556666666666666666654443
No 313
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=75.87 E-value=84 Score=35.78 Aligned_cols=102 Identities=23% Similarity=0.348 Sum_probs=57.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhH
Q 003779 479 SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE 558 (796)
Q Consensus 479 aLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKle 558 (796)
++-+..++-......|..+++.|+.+ +..|+.-..+.+.+.+.|... ||+++..+ .+|- +
T Consensus 216 ~~~~el~eik~~~~~L~~~~e~Lk~~----------~~~e~~~~~~~LqEEr~R~er-------LEeqlNd~--~elH-q 275 (395)
T PF10267_consen 216 KILEELREIKESQSRLEESIEKLKEQ----------YQREYQFILEALQEERYRYER-------LEEQLNDL--TELH-Q 275 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhHHHHHH-------HHHHHHHH--HHHH-H
Confidence 33333444445555666666666654 233444444444444444443 55555555 3342 5
Q ss_pred HHhhhhHHHHHHHHHHHHhHHHhhh-hHHHHHHHHHHHHHHHH
Q 003779 559 RQLENSQSEISSYKKKISSLEKERQ-DFQSTIEALQEEKKMMQ 600 (796)
Q Consensus 559 KElE~l~~Er~S~~~q~ssi~kER~-~l~stIdaLQEEKklLq 600 (796)
.|+.+|+.|+...+.++.=..-||- +++..||.+|+-...|+
T Consensus 276 ~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 276 NEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 6777888888777766554445552 46777788887665555
No 314
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=75.82 E-value=1.7e+02 Score=34.34 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=13.0
Q ss_pred ccccccCCCCCccccccc
Q 003779 207 DFVTKISPQNSVSTLFQS 224 (796)
Q Consensus 207 ~~~~~is~q~s~~~~~q~ 224 (796)
-|.++-.|.-+..|-.|+
T Consensus 12 ~F~Ny~gp~~~~~t~~~i 29 (489)
T PF05262_consen 12 EFINYSGPHASIETAQQI 29 (489)
T ss_pred EEEecCCCCcchhHHHHH
Confidence 577777777777777774
No 315
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=75.57 E-value=2.1e+02 Score=35.25 Aligned_cols=125 Identities=20% Similarity=0.290 Sum_probs=60.6
Q ss_pred HHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHHH
Q 003779 473 LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEK-ALRLR 551 (796)
Q Consensus 473 La~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk-~lqLR 551 (796)
|--||..|...++.-+..+..++.+|.--...-.-.+-.++.+..+-...+-+++.+.+.++.--.||...-.+ =...|
T Consensus 497 LslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r 576 (786)
T PF05483_consen 497 LSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENAR 576 (786)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhH
Confidence 34445555555555555555555555444333333333444444444444444444444444444444331111 11111
Q ss_pred ---hHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 552 ---SNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 552 ---S~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 604 (796)
...++..+++.-+.-++.-.++++. .-.+.|+.||.|-++|..++-
T Consensus 577 ~~e~e~~~k~kq~k~lenk~~~LrKqvE-------nk~K~ieeLqqeNk~LKKk~~ 625 (786)
T PF05483_consen 577 SIECEILKKEKQMKILENKCNNLRKQVE-------NKNKNIEELQQENKALKKKIT 625 (786)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHH
Confidence 2233444444444444455555544 335677888888888876654
No 316
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=75.42 E-value=38 Score=32.26 Aligned_cols=74 Identities=24% Similarity=0.336 Sum_probs=50.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 525 ECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 525 E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 604 (796)
|+.+.+.++..|-.=|+.=+.+...| ..+|..--.+++.+..++.++.=--++|.+-|+.||+|+.....+-.
T Consensus 6 eYsKLraQ~~vLKKaVieEQ~k~~~L-------~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~~~~~ 78 (102)
T PF10205_consen 6 EYSKLRAQNQVLKKAVIEEQAKNAEL-------KEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESEQKSK 78 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 45566677777777776555555544 34444444566677777777777788999999999999996655544
Q ss_pred h
Q 003779 605 K 605 (796)
Q Consensus 605 ~ 605 (796)
+
T Consensus 79 k 79 (102)
T PF10205_consen 79 K 79 (102)
T ss_pred c
Confidence 3
No 317
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=75.17 E-value=38 Score=35.30 Aligned_cols=75 Identities=19% Similarity=0.259 Sum_probs=35.6
Q ss_pred HHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 473 LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKA 547 (796)
Q Consensus 473 La~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~ 547 (796)
|.+++.-+-+--..+....+.|+-||..-+.+-+.=...-...+.|-.+...+..+|..+...|+..|..||.+.
T Consensus 110 LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 110 LEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444455555555554443332222222233344444555555555556666666666665543
No 318
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=74.81 E-value=2.3e+02 Score=35.47 Aligned_cols=113 Identities=22% Similarity=0.331 Sum_probs=66.2
Q ss_pred HhhhHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH-------
Q 003779 475 AENSSLTDSYNQQRSVVNQL----KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL------- 543 (796)
Q Consensus 475 ~ENsaLt~~yNqQ~~~v~qL----k~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~L------- 543 (796)
.||+.|.++.-+.-.++.+- ++++.|.|.++..+--.+.+++.-|+ .-.+-.+.|..|+..+
T Consensus 980 ~e~sdLnekLr~rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~-------~K~~~l~El~qEl~d~GV~AD~g 1052 (1480)
T COG3096 980 SENSDLNEKLRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYD-------TKKELLNELQQELQDIGVRADSG 1052 (1480)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHHHHHHHhCCCcCcc
Confidence 56666655543332222221 12233333333333344445555444 4556677788888654
Q ss_pred -HHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHH
Q 003779 544 -EEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 597 (796)
Q Consensus 544 -EEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKk 597 (796)
|+++. .|-+|| ...|.--+..+..+++++..++.|-+.|...|.++.-.-+
T Consensus 1053 AeeRA~-~RRDEL--h~~Lst~RsRr~~~EkqlT~~E~E~~~L~~~~rK~ErDY~ 1104 (1480)
T COG3096 1053 AEERAR-IRRDEL--HAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYF 1104 (1480)
T ss_pred hHHHHH-HHHHHH--HHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 67766 555666 3455666777888889999988888888877777654433
No 319
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=74.60 E-value=10 Score=34.98 Aligned_cols=45 Identities=27% Similarity=0.361 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Q 003779 490 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 534 (796)
Q Consensus 490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK 534 (796)
.|++|..++..|...+..-..+...+++.-++|+.|++.|.+|.-
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiD 69 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLD 69 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445555555555555554455566778888888888888888853
No 320
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=74.49 E-value=25 Score=37.89 Aligned_cols=39 Identities=31% Similarity=0.305 Sum_probs=27.1
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 512 LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 550 (796)
Q Consensus 512 le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqL 550 (796)
.+.+..|....+.++++-++|.|.|.-|--.||++..+|
T Consensus 151 keeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 151 KEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444555555566777888888888888888877655
No 321
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=74.45 E-value=68 Score=30.38 Aligned_cols=94 Identities=17% Similarity=0.150 Sum_probs=59.0
Q ss_pred ccccccccCCchhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003779 428 ENQHGFYSTKHNED----FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 503 (796)
Q Consensus 428 e~~~~F~s~~~~~~----faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~ 503 (796)
-+|+.|.+..+..- -...+.-.+++..+.-.+.=.+.+++-+++.-..|-+.....+-+--..+.+++.+|+.|+.
T Consensus 23 k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~ 102 (139)
T PF05615_consen 23 KRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKE 102 (139)
T ss_pred HHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554443210 13345556777777788888888888888877777666666666666667778888888887
Q ss_pred HHHHHHHHhhhhHHHHHHH
Q 003779 504 EIKVQLVELESFRNEYANV 522 (796)
Q Consensus 504 Ei~aQ~~~le~l~aErDaA 522 (796)
++..-...+.. +.|||+.
T Consensus 103 ~L~~ak~~r~~-k~eyd~L 120 (139)
T PF05615_consen 103 ELEEAKRVRQN-KEEYDAL 120 (139)
T ss_pred HHHHHHHHHHH-HHHHHHH
Confidence 76554444433 3355553
No 322
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=74.44 E-value=1.3e+02 Score=32.29 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=20.5
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 435 STKHNEDFAALEQHIEDLTQEKFALQRSLEA 465 (796)
Q Consensus 435 s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~ 465 (796)
=+..+.+|..+..+++-|.+-==.+.|-++|
T Consensus 46 v~~~d~eF~e~~ey~d~l~~~l~~ieki~~R 76 (240)
T cd07667 46 LRSRPLEFAAIGDYLDTFALKLGTIDRIAQR 76 (240)
T ss_pred cCCCChHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4567889999999998886543333333333
No 323
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=74.26 E-value=89 Score=30.42 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhhhHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 003779 462 SLEASRALSESLAAENSSL-TDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 516 (796)
Q Consensus 462 ~L~~s~~l~EsLa~ENsaL-t~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~ 516 (796)
.++..+.++..+..-+..+ .+.||........|+.+++.|+....+....++...
T Consensus 6 e~~~~~~~~a~~~e~e~~~~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~ 61 (136)
T PF04871_consen 6 ELEEEKQLAAKILELETKLKSQAESSLEQENKRLEAEEKELKEAEQAAEAELEELA 61 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666655555555 566666666666677666666654443333333333
No 324
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=74.23 E-value=2e+02 Score=34.55 Aligned_cols=84 Identities=24% Similarity=0.233 Sum_probs=51.0
Q ss_pred HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 468 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKA 547 (796)
Q Consensus 468 ~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~ 547 (796)
+.-+-|..++..|-++--+--..++..-..++.|+.+..-|...++.-+.+++-.|++..++.+-+.....||-+.-...
T Consensus 414 ~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al 493 (607)
T KOG0240|consen 414 EEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTAL 493 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666655543333444555555567778888888888888899999988888777664444333433333333
Q ss_pred HHHH
Q 003779 548 LRLR 551 (796)
Q Consensus 548 lqLR 551 (796)
.+|+
T Consensus 494 ~el~ 497 (607)
T KOG0240|consen 494 EELA 497 (607)
T ss_pred HHHH
Confidence 3333
No 325
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=74.04 E-value=97 Score=35.76 Aligned_cols=50 Identities=18% Similarity=0.148 Sum_probs=25.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHH
Q 003779 482 DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADE 531 (796)
Q Consensus 482 ~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~E 531 (796)
..|..-...+.+....++.+..++..+...++.=..+++..+.+......
T Consensus 266 ~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~ 315 (563)
T TIGR00634 266 GSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKR 315 (563)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 34445555555555556666666666555554334444444444443333
No 326
>PRK12704 phosphodiesterase; Provisional
Probab=73.91 E-value=1.8e+02 Score=33.88 Aligned_cols=6 Identities=33% Similarity=0.390 Sum_probs=3.1
Q ss_pred cccccc
Q 003779 635 TDTTLD 640 (796)
Q Consensus 635 ~d~~~e 640 (796)
.|++++
T Consensus 246 iddtp~ 251 (520)
T PRK12704 246 IDDTPE 251 (520)
T ss_pred EcCCCC
Confidence 555553
No 327
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=73.84 E-value=94 Score=37.79 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=10.6
Q ss_pred ccccccceeEeecCCCCCCCCC
Q 003779 34 QHHLEADRVRVTDLDGAGTSDG 55 (796)
Q Consensus 34 ~~~le~~~vr~~d~dgag~sdg 55 (796)
...|+.++-++.|.+|- +.||
T Consensus 128 ~~~l~~~i~~~id~~g~-i~d~ 148 (782)
T PRK00409 128 LPELEQEIHNCIDEEGE-VKDS 148 (782)
T ss_pred cHHHHHHHHHHhCCCCE-ECCC
Confidence 34455555566665542 4444
No 328
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=73.74 E-value=20 Score=38.06 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=21.5
Q ss_pred HHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003779 472 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 504 (796)
Q Consensus 472 sLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 504 (796)
+|-.+-..+...+.+|...+..|..|++.++..
T Consensus 3 ~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445555566666666777777777777766655
No 329
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=73.66 E-value=2.2e+02 Score=34.55 Aligned_cols=121 Identities=26% Similarity=0.293 Sum_probs=73.3
Q ss_pred HHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 003779 473 LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE----LESFRNEYANVRLECNAADERAKILASEVIGLEEKAL 548 (796)
Q Consensus 473 La~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~----le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~l 548 (796)
|-+++..+.++-=+-...|..|+..++--+.++-.+... +....+|+-.+-.++..|.-|+..|+.|+..|.+++.
T Consensus 187 L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~ 266 (629)
T KOG0963|consen 187 LKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLA 266 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555544444445555555555444444444443 6666888999999999999999999999999988776
Q ss_pred HHHhHh----------------------hhhHHHhhh----hHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 003779 549 RLRSNE----------------------LKLERQLEN----SQSEISSYKKKISSLEKERQDFQSTIEALQ 593 (796)
Q Consensus 549 qLRS~e----------------------LKleKElE~----l~~Er~S~~~q~ssi~kER~~l~stIdaLQ 593 (796)
..-+.. .++..+++. +.+|+..-..+++.++++=-..+++|+.|.
T Consensus 267 ~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~ 337 (629)
T KOG0963|consen 267 KANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELK 337 (629)
T ss_pred hhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543321 112223332 445555566666666666555566665554
No 330
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=73.41 E-value=70 Score=38.44 Aligned_cols=75 Identities=25% Similarity=0.266 Sum_probs=46.4
Q ss_pred HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 003779 469 LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKAL 548 (796)
Q Consensus 469 l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~l 548 (796)
=++.|--||+.|-+.-|+.--+-+-|--++.+|--| ...|+.|..++++---+-.||.+.|.-|+-.+-.++.
T Consensus 302 EVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E-------~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~ 374 (832)
T KOG2077|consen 302 EVENLILENSQLLETKNALNIVKNDLIAKVDELTCE-------KDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAE 374 (832)
T ss_pred HHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccH-------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888999999998888776666666666555443 2445666666666655555555554444444444433
Q ss_pred HH
Q 003779 549 RL 550 (796)
Q Consensus 549 qL 550 (796)
..
T Consensus 375 ~a 376 (832)
T KOG2077|consen 375 DA 376 (832)
T ss_pred HH
Confidence 33
No 331
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=73.38 E-value=94 Score=30.28 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=26.2
Q ss_pred HhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCc
Q 003779 576 SSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKS 612 (796)
Q Consensus 576 ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa 612 (796)
..+.+|-.+|.-++.-|.+-.+....||+. .|..+
T Consensus 80 ~~~q~EldDLL~ll~Dle~K~~kyk~rLk~--LG~eV 114 (136)
T PF04871_consen 80 KEAQSELDDLLVLLGDLEEKRKKYKERLKE--LGEEV 114 (136)
T ss_pred HhhhhhHHHHHHHHHhHHHHHHHHHHHHHH--cCCCc
Confidence 345677788888888888888888899984 44455
No 332
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=73.30 E-value=2.5e+02 Score=35.23 Aligned_cols=58 Identities=17% Similarity=0.242 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHH
Q 003779 443 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL 501 (796)
Q Consensus 443 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~L 501 (796)
..|...++.+.-.++-.+|+-....++.--+ .-.+.--.+-=++...+..-|+++|++
T Consensus 526 ~~L~~~~e~~dp~~~r~~~~~~~~~~v~~~~-~~v~~E~krilaRk~liE~rKe~~E~~ 583 (988)
T KOG2072|consen 526 ESLSKVVEELDPVIIRNSRAKKKEGAVTNYL-KNVDKEHKRILARKSLIEKRKEDLEKQ 583 (988)
T ss_pred HHHHHHHHhhChHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3567777777778887777766655544322 222223333344555555555555544
No 333
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=73.05 E-value=27 Score=30.39 Aligned_cols=33 Identities=24% Similarity=0.531 Sum_probs=22.9
Q ss_pred HHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHH
Q 003779 570 SYKKKISSLEKERQDFQSTIEALQEEKKMMQSK 602 (796)
Q Consensus 570 S~~~q~ssi~kER~~l~stIdaLQEEKklLqSK 602 (796)
.+.+++...++-...|...|++|.+|.+.++++
T Consensus 29 ~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 29 AFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 445555666666777888888999888877653
No 334
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.77 E-value=22 Score=32.26 Aligned_cols=54 Identities=22% Similarity=0.357 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHH
Q 003779 441 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQL 494 (796)
Q Consensus 441 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qL 494 (796)
-++-||=.|++|.+++-.|+...+-++.--|.|..||+.|...-+.--..+-.|
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777777777777766654443333333333
No 335
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=72.75 E-value=1e+02 Score=30.35 Aligned_cols=126 Identities=17% Similarity=0.255 Sum_probs=70.8
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 471 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 550 (796)
Q Consensus 471 EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqL 550 (796)
++|--||..+..+.-+....+..|+.. +..-.-.|..++.-......++............++..+.+++.++
T Consensus 45 eqLkien~~l~~kIeERn~eL~~Lk~~-------~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~ 117 (177)
T PF13870_consen 45 EQLKIENQQLNEKIEERNKELLKLKKK-------IGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRV 117 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888887766665555555444 4444455555555555566666666666666666666666666666
Q ss_pred HhHhhhhHHHhhhhHHHHHHHH-----HHHHhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 003779 551 RSNELKLERQLENSQSEISSYK-----KKISSLEKERQDFQSTIEALQEEKKMMQSKL 603 (796)
Q Consensus 551 RS~eLKleKElE~l~~Er~S~~-----~q~ssi~kER~~l~stIdaLQEEKklLqSKL 603 (796)
+...-|++++..+++..-.-+. .-|.....+-..++..|..|+...+.|+-++
T Consensus 118 k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 118 KKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666666666666554433221 1122222233344455555555555555444
No 336
>PF14992 TMCO5: TMCO5 family
Probab=72.59 E-value=53 Score=35.96 Aligned_cols=105 Identities=13% Similarity=0.182 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHH---HHh------
Q 003779 444 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE--IKVQL---VEL------ 512 (796)
Q Consensus 444 aLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E--i~aQ~---~~l------ 512 (796)
.|=|-|++--.....|.|.+.+...+++.--++|.-. .|.|.+. .+|.-+-.+|+.+ +-++- +-.
T Consensus 22 ~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~---~~~e~~l-~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~ 97 (280)
T PF14992_consen 22 SLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIIS---EERETDL-QELELETAKLEKENEHLSKSVQELQRKQDEQE 97 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhh---hchHHHH-HHHHhhhHHHhhhhHhhhhhhhhhhhhhcccc
Confidence 3445666666667777788877777777776666555 4555553 3333333333322 21100 000
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779 513 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 552 (796)
Q Consensus 513 e~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS 552 (796)
-.+.-|..++.+..+....+.+.+-.+++.+|.++....+
T Consensus 98 ~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~ 137 (280)
T PF14992_consen 98 TNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVED 137 (280)
T ss_pred CCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 0123344455555555556666666666666666665543
No 337
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=72.29 E-value=28 Score=30.69 Aligned_cols=57 Identities=26% Similarity=0.279 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 003779 535 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 605 (796)
Q Consensus 535 ~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~ 605 (796)
.|+.-|..|=..|.+||..--.+.-++..+. .||.+++.-++.-..-.+.+-++|+.
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~--------------~ER~~L~ekne~Ar~rvEamI~RLk~ 60 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWR--------------EERAQLLEKNEQARQKVEAMITRLKA 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4555555555555555555544444444444 44555555544444555555555553
No 338
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=72.26 E-value=89 Score=29.53 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003779 458 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 504 (796)
Q Consensus 458 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 504 (796)
.|+.-|.-....-+..+.+=..+...+......+.+|......+++.
T Consensus 6 rL~~vl~l~~~~ee~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~ 52 (147)
T PRK05689 6 ALATLLDLAEKAEEQAALQLGQARQELQQAEQQLKMLEDYRLEYRQQ 52 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443344444455555555555444444443
No 339
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=71.88 E-value=29 Score=40.26 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=12.3
Q ss_pred HHHhHHHhhhhHHHHHHHHHHHHH
Q 003779 574 KISSLEKERQDFQSTIEALQEEKK 597 (796)
Q Consensus 574 q~ssi~kER~~l~stIdaLQEEKk 597 (796)
+.+.+..+|++++..|+.||..++
T Consensus 117 ~~~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 117 EIEQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344445555566666655543
No 340
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=71.58 E-value=1.3e+02 Score=31.06 Aligned_cols=85 Identities=16% Similarity=0.118 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 003779 444 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 523 (796)
Q Consensus 444 aLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq 523 (796)
.++.+++-+...+-.+...|.++++.=+....|.+.+...|..+..-+ -+.++|+++.-+.--.......+.+|..+.
T Consensus 103 ~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~~~~--~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v 180 (239)
T cd07647 103 KTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSSSGA--QPKEAEKLKKKAAQCKTSAEEADSAYKSSI 180 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555556666666666666666666666655544322 134555555554444444455556666665
Q ss_pred HhhhHHH
Q 003779 524 LECNAAD 530 (796)
Q Consensus 524 ~E~naA~ 530 (796)
..++.+.
T Consensus 181 ~~l~~~~ 187 (239)
T cd07647 181 GCLEDAR 187 (239)
T ss_pred HHHHHHH
Confidence 5555554
No 341
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=71.45 E-value=95 Score=29.48 Aligned_cols=101 Identities=10% Similarity=0.091 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHH
Q 003779 495 KSEMEKLQEEIKVQLVELESFRNEYANVRLECNA------ADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI 568 (796)
Q Consensus 495 k~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~na------A~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er 568 (796)
+..+.+.++.+......|..+...++.++..+.. .-...+....=+..|.+.|.+. .+.+..+..++
T Consensus 22 ~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~~~~l~~~~~fl~~L~~~i~~q-------~~~v~~~~~~v 94 (146)
T PRK07720 22 LGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGLSIQEIRHYQQFVTNLERTIDHY-------QLLVMQAREQM 94 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 3334444444444444444444444444444333 1223344455556666666544 34555666666
Q ss_pred HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHH
Q 003779 569 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSK 602 (796)
Q Consensus 569 ~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSK 602 (796)
+..+..+....++|..+.+.+++-..+-...+.|
T Consensus 95 e~~r~~~~ea~~~~k~~ekLker~~~~~~~~e~r 128 (146)
T PRK07720 95 NRKQQDLTEKNIEVKKYEKMKEKKQEMFALEEKA 128 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777666555444443
No 342
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=71.43 E-value=2.7e+02 Score=34.67 Aligned_cols=11 Identities=18% Similarity=-0.009 Sum_probs=5.4
Q ss_pred CCccccCCCCc
Q 003779 227 SNAIALGNGHS 237 (796)
Q Consensus 227 sn~~~~~~g~s 237 (796)
-++|.-.||+|
T Consensus 28 l~~I~G~nGaG 38 (1042)
T TIGR00618 28 IFLICGKTGAG 38 (1042)
T ss_pred eEEEECCCCCC
Confidence 34455555544
No 343
>PRK02119 hypothetical protein; Provisional
Probab=71.42 E-value=33 Score=30.31 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Q 003779 586 QSTIEALQEEKKMMQSKLRKASGS 609 (796)
Q Consensus 586 ~stIdaLQEEKklLqSKLR~asa~ 609 (796)
+..|++|+.+.++|..||+....+
T Consensus 36 q~~id~L~~ql~~L~~rl~~~~~~ 59 (73)
T PRK02119 36 QFVIDKMQVQLRYMANKLKDMQPS 59 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 467899999999999999976543
No 344
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=71.29 E-value=31 Score=37.33 Aligned_cols=87 Identities=22% Similarity=0.258 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHh
Q 003779 498 MEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS 577 (796)
Q Consensus 498 mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ss 577 (796)
+--|-.|-++|+-+|.+ |-+||.....-.+|..++.-||+.|+|+-.+|+ .|-++++++-..
T Consensus 61 L~HLS~EEK~~RrKLKN----RVAAQtaRDrKKaRm~eme~~i~dL~een~~L~--------------~en~~Lr~~n~~ 122 (292)
T KOG4005|consen 61 LDHLSWEEKVQRRKLKN----RVAAQTARDRKKARMEEMEYEIKDLTEENEILQ--------------NENDSLRAINES 122 (292)
T ss_pred hcccCHHHHHHHHHHHH----HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
Confidence 33345666777777765 567788888888888999999999998876553 344567777888
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHH
Q 003779 578 LEKERQDFQSTIEALQEEKKMMQSK 602 (796)
Q Consensus 578 i~kER~~l~stIdaLQEEKklLqSK 602 (796)
++.+-+++.+.++-|.+|+..+...
T Consensus 123 L~~~n~el~~~le~~~~~l~~~~~~ 147 (292)
T KOG4005|consen 123 LLAKNHELDSELELLRQELAELKQQ 147 (292)
T ss_pred HHhhhHHHHHHHHHHHHHHHhhHHH
Confidence 8888888999999888888766443
No 345
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=71.23 E-value=85 Score=28.85 Aligned_cols=33 Identities=24% Similarity=0.219 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHH
Q 003779 497 EMEKLQEEIKVQLVELESFRNEYANVRLECNAA 529 (796)
Q Consensus 497 ~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA 529 (796)
=+.+|...|..|...++.+..+.+.++....+|
T Consensus 69 f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a 101 (141)
T TIGR02473 69 FIRQLDQRIQQQQQELALLQQEVEAKRERLLEA 101 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444434444443333333333333
No 346
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=71.05 E-value=31 Score=30.42 Aligned_cols=25 Identities=4% Similarity=0.003 Sum_probs=9.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHH
Q 003779 520 ANVRLECNAADERAKILASEVIGLE 544 (796)
Q Consensus 520 DaAq~E~naA~ERaK~LAaEVV~LE 544 (796)
+.....|..-.+-+..|-.++..++
T Consensus 10 e~Li~~~~~L~~EN~~Lr~q~~~~~ 34 (65)
T TIGR02449 10 EHLLEYLERLKSENRLLRAQEKTWR 34 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334433333333333333333
No 347
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=70.84 E-value=94 Score=35.97 Aligned_cols=48 Identities=23% Similarity=0.365 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Q 003779 490 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEV 540 (796)
Q Consensus 490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEV 540 (796)
.+..|.+.+++++.+|......- ..||......+....+|.+.|+.|+
T Consensus 15 ~I~~L~~~i~~~k~eV~~~I~~~---y~df~~~~~~~~~L~~~~~~l~~eI 62 (593)
T PF06248_consen 15 SISRLSRRIEELKEEVHSMINKK---YSDFSPSLQSAKDLIERSKSLAREI 62 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444445555554443332222 1255555555555555555555555
No 348
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=70.76 E-value=1.4e+02 Score=31.02 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003779 458 ALQRSLEASRALSESLAAENSSLTDSYNQ 486 (796)
Q Consensus 458 aLqR~L~~s~~l~EsLa~ENsaLt~~yNq 486 (796)
.|..++..-...++.+|..+..|..+-+.
T Consensus 57 t~~~~w~~i~~~~e~~a~~H~~l~~~L~~ 85 (261)
T cd07648 57 TFAPLWLVLRVSTEKLSELHLQLVQKLQE 85 (261)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666677777777777777666643
No 349
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=70.63 E-value=44 Score=39.29 Aligned_cols=83 Identities=14% Similarity=0.232 Sum_probs=62.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHH
Q 003779 516 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 595 (796)
Q Consensus 516 ~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEE 595 (796)
..|+-..+.....-.|.-+.+++|+-..++.+. |+++++..+--.+.-+++++.+.+++|..+.-..|+|...
T Consensus 27 e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~-------Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~ 99 (604)
T KOG3564|consen 27 EDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLA-------KAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQ 99 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-------HHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 345555555566666777778888887777665 5667777777777778888888888888888888888888
Q ss_pred HHHHHHHHHh
Q 003779 596 KKMMQSKLRK 605 (796)
Q Consensus 596 KklLqSKLR~ 605 (796)
.+++.-.|+.
T Consensus 100 i~~i~d~l~~ 109 (604)
T KOG3564|consen 100 IQLIKDMLKC 109 (604)
T ss_pred HHHHHHHHhc
Confidence 8777777773
No 350
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.49 E-value=1.6e+02 Score=34.99 Aligned_cols=26 Identities=12% Similarity=0.219 Sum_probs=15.1
Q ss_pred HHHHHHhhhHHHHHHHHhhHHHHHHH
Q 003779 470 SESLAAENSSLTDSYNQQRSVVNQLK 495 (796)
Q Consensus 470 ~EsLa~ENsaLt~~yNqQ~~~v~qLk 495 (796)
.+-+.+|+--|+..||+...+.+-++
T Consensus 233 lq~~~~ehkllee~~~rl~~~~s~Ve 258 (613)
T KOG0992|consen 233 LQALIREHKLLEEHLERLHLQLSDVE 258 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45556666666666666655554443
No 351
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=70.18 E-value=1.1e+02 Score=34.02 Aligned_cols=67 Identities=16% Similarity=0.259 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 003779 535 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS 601 (796)
Q Consensus 535 ~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqS 601 (796)
..+.++..+-.++....|.+--+...+|+-+.|.+++++.+..+.+-|-..-.+.+.+.||++.|..
T Consensus 116 ~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~ 182 (338)
T KOG3647|consen 116 AIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQ 182 (338)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666677777777788888888888888888888888888888766543
No 352
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=69.95 E-value=30 Score=31.77 Aligned_cols=59 Identities=22% Similarity=0.358 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHH
Q 003779 440 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 498 (796)
Q Consensus 440 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~m 498 (796)
|.++-||--|++|-+++..|....+..+.--+.|..||..|...-|.=-..+..|=..|
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667777777777777777777777777777777777777666666555555555554
No 353
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=69.91 E-value=66 Score=38.82 Aligned_cols=61 Identities=21% Similarity=0.274 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHhhhHHHHHHHHhhHHHHHHHHHHH
Q 003779 448 HIEDLTQEKFALQRSLEASRALSES----------------------------LAAENSSLTDSYNQQRSVVNQLKSEME 499 (796)
Q Consensus 448 hIeDLT~EKfaLqR~L~~s~~l~Es----------------------------La~ENsaLt~~yNqQ~~~v~qLk~~mE 499 (796)
-+|+.+..|-.|+..++..++-... |....+-|+.+||+...+..++..+++
T Consensus 55 kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie 134 (660)
T KOG4302|consen 55 KVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIE 134 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777776654433 344456788889999999999999999
Q ss_pred HHHHHHHHH
Q 003779 500 KLQEEIKVQ 508 (796)
Q Consensus 500 ~Lq~Ei~aQ 508 (796)
+|-.+|..+
T Consensus 135 ~l~~~l~g~ 143 (660)
T KOG4302|consen 135 KLCEELGGP 143 (660)
T ss_pred HHHHHhcCC
Confidence 999888887
No 354
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=69.66 E-value=34 Score=29.60 Aligned_cols=47 Identities=21% Similarity=0.377 Sum_probs=29.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHH
Q 003779 483 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 536 (796)
Q Consensus 483 ~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~L 536 (796)
+.++....|.+|..++.+|.++|. .++.|..+|+.|+..|.+|.--.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~-------~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVN-------ALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 445556666777777777777654 45555566666666676665433
No 355
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=69.26 E-value=1.5e+02 Score=30.82 Aligned_cols=78 Identities=26% Similarity=0.271 Sum_probs=44.2
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHH--------------HHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 003779 513 ESFRNEYANVRLECNAADERAKILASE--------------VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 578 (796)
Q Consensus 513 e~l~aErDaAq~E~naA~ERaK~LAaE--------------VV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi 578 (796)
+-++-=..+|..|.+.+-|+--.|..| ...||.+|.+|...+-.++.-+..|- .++.-=
T Consensus 81 eyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE-------~KL~eE 153 (178)
T PF14073_consen 81 EYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELE-------EKLQEE 153 (178)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 334434444555556666665555555 45677888888777776666554433 333333
Q ss_pred HHhhhhHHHHHHHHHHHHH
Q 003779 579 EKERQDFQSTIEALQEEKK 597 (796)
Q Consensus 579 ~kER~~l~stIdaLQEEKk 597 (796)
+-.|--|+..-..||++..
T Consensus 154 ehqRKlvQdkAaqLQt~lE 172 (178)
T PF14073_consen 154 EHQRKLVQDKAAQLQTGLE 172 (178)
T ss_pred HHHHHHHHHHHHHHHhhHH
Confidence 4445555555566665543
No 356
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=69.22 E-value=1.6e+02 Score=31.13 Aligned_cols=117 Identities=12% Similarity=0.265 Sum_probs=69.5
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 003779 476 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ-LVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE 554 (796)
Q Consensus 476 ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ-~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~e 554 (796)
++..|.+-+.+-+ ++...+..+.++...| .+.+...-.||-+....+..|-.+=..+=.....++..+.+.|...
T Consensus 74 ~~~~ls~~l~~la----ev~~ki~~~~~~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~ 149 (234)
T cd07664 74 DHTALSRALSQLA----EVEEKIDQLHQDQAFADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAE 149 (234)
T ss_pred ccchHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455655555544 4444444444433333 3456666778888888887776554455555667777777777776
Q ss_pred hhhHH-----HhhhhHHHHHHHHHHHHhHHHhhhh----HHHHHHHHHHHH
Q 003779 555 LKLER-----QLENSQSEISSYKKKISSLEKERQD----FQSTIEALQEEK 596 (796)
Q Consensus 555 LKleK-----ElE~l~~Er~S~~~q~ssi~kER~~----l~stIdaLQEEK 596 (796)
-|+.. -+..++.|+..+++++..+.++-.. +..+|++.++||
T Consensus 150 ~Kl~~~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er 200 (234)
T cd07664 150 AKLQYANKPDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKER 200 (234)
T ss_pred HHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66632 3445666666666666666555443 445666676665
No 357
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=69.00 E-value=1.3e+02 Score=36.72 Aligned_cols=51 Identities=22% Similarity=0.271 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003779 463 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE 513 (796)
Q Consensus 463 L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le 513 (796)
+++|+++......+-+.|..+-+++...+.+.+.+++++++|++.....++
T Consensus 499 i~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~ 549 (771)
T TIGR01069 499 IEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELE 549 (771)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666655555555555555555555555555555555555444443333
No 358
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=68.92 E-value=1e+02 Score=33.67 Aligned_cols=82 Identities=20% Similarity=0.240 Sum_probs=60.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779 439 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQ------RSVVNQLKSEMEKLQEEIKVQLVEL 512 (796)
Q Consensus 439 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ------~~~v~qLk~~mE~Lq~Ei~aQ~~~l 512 (796)
......|++-++||.+-|-.-..-|....++-+.=+.|.+.+-.+|-.+ ...-..|..++.+++.-++.-...-
T Consensus 71 ~gG~~~l~~~l~~L~~l~~~~~~~L~e~~~~Ld~E~~eD~~~R~kyg~rWtr~pS~~~~~~l~~~i~~~r~~L~~A~~sD 150 (339)
T cd09238 71 SGGLAALEGELPRLRELRRVCTELLAAAQESLEAEATEDSAARTQYGTAWTRPPSATLTKNLWERLNRFRVNLEQAGDSD 150 (339)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4557889999999999999999999999999998899999998888552 2233467777777766555444444
Q ss_pred hhhHHHHH
Q 003779 513 ESFRNEYA 520 (796)
Q Consensus 513 e~l~aErD 520 (796)
..++.-|.
T Consensus 151 ~~v~~k~~ 158 (339)
T cd09238 151 ESLRRRIE 158 (339)
T ss_pred HHHHHHHH
Confidence 44444333
No 359
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=68.80 E-value=2.2e+02 Score=32.61 Aligned_cols=106 Identities=15% Similarity=0.266 Sum_probs=58.0
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHH
Q 003779 435 STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI----KVQLV 510 (796)
Q Consensus 435 s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei----~aQ~~ 510 (796)
.......|.++...+.|+.++...|++.+++-+.- +...|+-....+.+.+-..++|++++ +.++.
T Consensus 207 ~~~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~----------~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~ 276 (395)
T PF10267_consen 207 SSQQNLGLQKILEELREIKESQSRLEESIEKLKEQ----------YQREYQFILEALQEERYRYERLEEQLNDLTELHQN 276 (395)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44567788999999999999999998888876652 22223333333333333333333322 33344
Q ss_pred HhhhhHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 511 ELESFRNEYANVRLEC-NAADERAKILASEVIGLEEKALRL 550 (796)
Q Consensus 511 ~le~l~aErDaAq~E~-naA~ERaK~LAaEVV~LEEk~lqL 550 (796)
+..+|+.|...+.-.. =-+.||+|.+.-=|+..+.|+-++
T Consensus 277 Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRiskl 317 (395)
T PF10267_consen 277 EIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKL 317 (395)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4444444433221111 124677777766666666666655
No 360
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=68.72 E-value=1.2e+02 Score=37.27 Aligned_cols=63 Identities=29% Similarity=0.455 Sum_probs=38.2
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 476 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 550 (796)
Q Consensus 476 ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqL 550 (796)
++--+.+.-|.....+.+++++.++|.. +++..|+.-+.+|.. +..+.+..-...||++-..+
T Consensus 535 ~~~~~~~~l~~kke~i~q~re~~~~~~k---------~~l~~e~~~~i~E~~---~~~~~i~~l~~el~eq~~~~ 597 (809)
T KOG0247|consen 535 ESQMLSSQLNDKKEQIEQLRDEIERLKK---------ENLTTEYSIEILEST---EYEEEIEALDQELEEQKMEL 597 (809)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhh---------hhhhhhhhhhhhhcc---hhhhhhHHHHHHHHhhhHHH
Confidence 3344555555555666666666655555 577788887777766 55556666666666654433
No 361
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=68.69 E-value=54 Score=34.37 Aligned_cols=89 Identities=13% Similarity=0.118 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 003779 441 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 520 (796)
Q Consensus 441 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD 520 (796)
....++.||+-+..-|......|.++++-=+....|-..+...+|.+...+. .++++.++.-+.--...++.-..+|.
T Consensus 101 ~rKk~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~~~~~~~~~~~--~ke~~K~~~Kl~K~~~~~~k~~~~Y~ 178 (240)
T cd07672 101 ARKKIELIMDAIHKQRAMQFKKTMESKKNYEQKCRDKDEAEQAVNRNANLVN--VKQQEKLFAKLAQSKQNAEDADRLYM 178 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888888888888888888888888888888887876543222 22333333333222233444555666
Q ss_pred HHHHhhhHHHH
Q 003779 521 NVRLECNAADE 531 (796)
Q Consensus 521 aAq~E~naA~E 531 (796)
.+...++..+.
T Consensus 179 ~~v~~l~~~~~ 189 (240)
T cd07672 179 QNISVLDKIRE 189 (240)
T ss_pred HHHHHHHHHHH
Confidence 65555555544
No 362
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=68.64 E-value=2.1e+02 Score=32.46 Aligned_cols=166 Identities=18% Similarity=0.237 Sum_probs=100.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHhhHHH--------HHHHHHHHHHHHHHHHHH
Q 003779 439 NEDFAALEQHIEDLTQEKFALQRSLEASRALS-ESLAAENSSLTDSYNQQRSVV--------NQLKSEMEKLQEEIKVQL 509 (796)
Q Consensus 439 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~-EsLa~ENsaLt~~yNqQ~~~v--------~qLk~~mE~Lq~Ei~aQ~ 509 (796)
.+.+.-+++|||-..+.|- |.--+-+++-+. ..|++.-+.+..+-|+-|-.- .+++..=-+|++++.
T Consensus 150 ~eQy~~re~hidk~~e~ke-l~~ql~~aKlq~~~~l~a~~ee~~~~e~~~glEKd~lak~~~e~~~~~e~qlK~ql~--- 225 (391)
T KOG1850|consen 150 GEQYEEREKHIDKQIQKKE-LWEQLGKAKLQEIKLLTAKLEEASIQEKKSGLEKDELAKIMLEEMKQVEGQLKEQLA--- 225 (391)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3567788999998887776 777666555443 345566666666666554332 222222223333332
Q ss_pred HHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh-------hhHHHhhhhHHHHHHHHHHHHhHHHhh
Q 003779 510 VELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL-------KLERQLENSQSEISSYKKKISSLEKER 582 (796)
Q Consensus 510 ~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eL-------KleKElE~l~~Er~S~~~q~ssi~kER 582 (796)
-.++-|+--+.-+.+..|=--.+-.|+..+-.+|.++--.-| ++-+-+-.+..|..-+.++|..+.+-=
T Consensus 226 ----lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~ki 301 (391)
T KOG1850|consen 226 ----LYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKI 301 (391)
T ss_pred ----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 234445555555555666566666777766666665432222 222333334555555666777777777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccCCCc
Q 003779 583 QDFQSTIEALQEEKKMMQSKLRKASGSGKS 612 (796)
Q Consensus 583 ~~l~stIdaLQEEKklLqSKLR~asa~gKa 612 (796)
+.|.+..-|||.|...|..+++-+.+++-+
T Consensus 302 q~LekLcRALq~ernel~~~~~~~e~~v~~ 331 (391)
T KOG1850|consen 302 QRLEKLCRALQTERNELNKKLEDLEAQVSA 331 (391)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcccch
Confidence 788889999999999999999966665443
No 363
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=68.61 E-value=1.5e+02 Score=30.66 Aligned_cols=81 Identities=15% Similarity=0.189 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHH
Q 003779 490 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 569 (796)
Q Consensus 490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~ 569 (796)
++.--+--|++|++|+..-..++......+..++.-++.|..-++....++..|..-+...|.+.-..+.-.++...|+.
T Consensus 61 aL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~ 140 (188)
T PF05335_consen 61 ALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELA 140 (188)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445567889999998888899999999999999999999999999999999999888888887777777777765544
Q ss_pred H
Q 003779 570 S 570 (796)
Q Consensus 570 S 570 (796)
.
T Consensus 141 e 141 (188)
T PF05335_consen 141 E 141 (188)
T ss_pred H
Confidence 4
No 364
>PRK15396 murein lipoprotein; Provisional
Probab=68.49 E-value=25 Score=31.83 Aligned_cols=46 Identities=15% Similarity=0.322 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Q 003779 490 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 535 (796)
Q Consensus 490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~ 535 (796)
.|++|..++..|..++..-......++....+|+.|+..|.+|.--
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn 71 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444555666666677777777777543
No 365
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=68.47 E-value=1.2e+02 Score=29.39 Aligned_cols=81 Identities=16% Similarity=0.218 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHH
Q 003779 494 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKK 573 (796)
Q Consensus 494 Lk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~ 573 (796)
--+++..++.-+..-...++.+..+.++.++.+=-++-+.+..+.+...-...+ +-.+..-+.|.++|+.
T Consensus 32 F~~ki~~F~~iv~~~~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~R~~~~q~l----------q~~I~Ek~~eLERl~~ 101 (120)
T PF14931_consen 32 FVEKISEFQKIVKGFIEILDELAKRVENEKLKAIGARNLLKSEAKQREAQQQQL----------QALIAEKKMELERLRS 101 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 334455555555555555566666666666665555555555543332211111 1122233445566777
Q ss_pred HHHhHHHhhhh
Q 003779 574 KISSLEKERQD 584 (796)
Q Consensus 574 q~ssi~kER~~ 584 (796)
+|+++++--.+
T Consensus 102 E~~sL~kve~e 112 (120)
T PF14931_consen 102 EYESLQKVEQE 112 (120)
T ss_pred HHHHHHHHHHH
Confidence 77766554333
No 366
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=68.35 E-value=1.8e+02 Score=31.42 Aligned_cols=77 Identities=10% Similarity=0.071 Sum_probs=33.0
Q ss_pred HhhhhHHHHHHHHHhhhHHHH-------HHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhh
Q 003779 511 ELESFRNEYANVRLECNAADE-------RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ 583 (796)
Q Consensus 511 ~le~l~aErDaAq~E~naA~E-------RaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~ 583 (796)
.+..+..++..++.++.++.. +.+.|..++..|+.++.+.+..-+.. ..........+|..++.|+.
T Consensus 215 ~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~------~~~~l~~~~~~~~~L~re~~ 288 (362)
T TIGR01010 215 LISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLSGG------LGDSLNEQTADYQRLVLQNE 288 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcC------CCccHHHHHHHHHHHHHHHH
Confidence 344445555555544444433 33444555555555544433222110 11123334445555555555
Q ss_pred hHHHHHHHHH
Q 003779 584 DFQSTIEALQ 593 (796)
Q Consensus 584 ~l~stIdaLQ 593 (796)
-.+...+.+.
T Consensus 289 ~a~~~y~~~l 298 (362)
T TIGR01010 289 LAQQQLKAAL 298 (362)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 367
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=68.23 E-value=1.4e+02 Score=30.38 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Q 003779 490 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 534 (796)
Q Consensus 490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK 534 (796)
...+++..+++|+.+++.-...++.+..+.+.+..+...-.+|.+
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~ 107 (188)
T PF03962_consen 63 AKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREE 107 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 345666777777777777777777777777666665555555544
No 368
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=68.15 E-value=1e+02 Score=28.50 Aligned_cols=38 Identities=32% Similarity=0.392 Sum_probs=25.4
Q ss_pred HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 003779 569 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 606 (796)
Q Consensus 569 ~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~a 606 (796)
..+..++..++.....+.+.++.|++..+.++.+||.+
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666777777777777777777765
No 369
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=67.99 E-value=2.2e+02 Score=32.45 Aligned_cols=100 Identities=22% Similarity=0.338 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 003779 444 ALEQHIEDLTQEKFALQ---RSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 520 (796)
Q Consensus 444 aLqqhIeDLT~EKfaLq---R~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD 520 (796)
-||..|..+|+.--.|- ..++.-|.=+++|-.-|+.|...-=+-+++...-|.++-+|+.=+.-..-+...+..-.+
T Consensus 72 llq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~ 151 (401)
T PF06785_consen 72 LLQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLD 151 (401)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 47777888876544332 234444555677888888877666666666666666666666666555556666777788
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHH
Q 003779 521 NVRLECNAADERAKILASEVIGL 543 (796)
Q Consensus 521 aAq~E~naA~ERaK~LAaEVV~L 543 (796)
++.++|.+-.|+++.|-.|..+.
T Consensus 152 ~l~~e~~Ekeeesq~LnrELaE~ 174 (401)
T PF06785_consen 152 ALQQECGEKEEESQTLNRELAEA 174 (401)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHH
Confidence 88899999999999888776543
No 370
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=67.91 E-value=1.4e+02 Score=31.39 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003779 442 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 521 (796)
Q Consensus 442 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDa 521 (796)
-..++.+++.+-..+..+...|.++++-=+....+-+++...+|.-.+..+--++++++++..+..-...+...+.+|..
T Consensus 114 ~K~~e~~~~kaqk~~~~~~~~l~kaKk~Y~~~cke~e~a~~~~~~~~~d~~~~~~eleK~~~k~~k~~~~~~~~~~~Y~~ 193 (258)
T cd07655 114 TKEAEDGFAKAQKPWAKLLKKVEKAKKAYHAACKAEKSAQKQENNAKSDTSLSPDQVKKLQDKVEKCKQEVSKTKDKYEK 193 (258)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556555555566666777788777777777777777776543222222466777777666666666677777777
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 003779 522 VRLECNAADERAKILASEVIGLEEKAL 548 (796)
Q Consensus 522 Aq~E~naA~ERaK~LAaEVV~LEEk~l 548 (796)
+...+|.-.. .--.+|...=+++.
T Consensus 194 ~l~~~n~~~~---~y~~~m~~~~~~~Q 217 (258)
T cd07655 194 ALEDLNKYNP---RYMEDMEQVFDKCQ 217 (258)
T ss_pred HHHHHHhhhH---HHHHHHHHHHHHHH
Confidence 7666655543 24444444433333
No 371
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=67.73 E-value=34 Score=37.12 Aligned_cols=101 Identities=20% Similarity=0.305 Sum_probs=50.6
Q ss_pred HHHHHHhhhHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 003779 470 SESLAAENSSLTDSYNQQR-------SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIG 542 (796)
Q Consensus 470 ~EsLa~ENsaLt~~yNqQ~-------~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~ 542 (796)
+-.|+.=--|+.. |..-- ..+.+++.+++..+.+++.....|..+..+....+.++.++......|..++..
T Consensus 196 a~~Lc~WV~A~~~-Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~ 274 (344)
T PF12777_consen 196 AGSLCKWVRAMVK-YYEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEE 274 (344)
T ss_dssp HHHHHHHHHHHHH-HHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455544445443 44433 444444444555555555555555555555555555555566556666666655
Q ss_pred HHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 003779 543 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 578 (796)
Q Consensus 543 LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi 578 (796)
.+.++.+. .+=+.+|..|+.+-...+..+
T Consensus 275 ~~~kl~rA-------~~Li~~L~~E~~RW~~~~~~l 303 (344)
T PF12777_consen 275 TERKLERA-------EKLISGLSGEKERWSEQIEEL 303 (344)
T ss_dssp HHHHHHHH-------HHHHHCCHHHHHCCHCHHHHH
T ss_pred HHhhhccH-------HHHHhhhcchhhhHHHHHHHH
Confidence 55555433 222344555544444444433
No 372
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=67.36 E-value=2.1e+02 Score=31.98 Aligned_cols=137 Identities=18% Similarity=0.212 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 003779 442 FAALEQHIEDLTQEKFALQRSLE-----------ASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV 510 (796)
Q Consensus 442 faaLqqhIeDLT~EKfaLqR~L~-----------~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~ 510 (796)
.+.|+.+|..|..|=..+.|+.. .+++....|...-..+-.+-.+--..|.++.+++.+
T Consensus 27 i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~---------- 96 (383)
T PF04100_consen 27 IAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQ---------- 96 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 35566666666666555555443 344444555555555555555555566666666644
Q ss_pred HhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHH
Q 003779 511 ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE 590 (796)
Q Consensus 511 ~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stId 590 (796)
.|.|..-++..+-=.|.|++=|..++.=-.-+....-+---.+=....++..+.+.|.+| ..|.
T Consensus 97 --------LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~~yksi--------~~I~ 160 (383)
T PF04100_consen 97 --------LDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFKPYKSI--------PQIA 160 (383)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcccCc--------HHHH
Confidence 477888888887777777765544432111111111211112223455666777777765 4555
Q ss_pred HHHHHHHHHHHHHH
Q 003779 591 ALQEEKKMMQSKLR 604 (796)
Q Consensus 591 aLQEEKklLqSKLR 604 (796)
.|..+...++..|+
T Consensus 161 ~L~~~i~~l~~~L~ 174 (383)
T PF04100_consen 161 ELSKRIDQLQNELK 174 (383)
T ss_pred HHHHHHHHHHHHHH
Confidence 55566666566555
No 373
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=67.11 E-value=1.1e+02 Score=28.54 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=6.1
Q ss_pred hHHHHHHHHHhhhHHH
Q 003779 515 FRNEYANVRLECNAAD 530 (796)
Q Consensus 515 l~aErDaAq~E~naA~ 530 (796)
+..++-.+..+|+.+.
T Consensus 93 L~~~f~~~m~~fq~~Q 108 (151)
T cd00179 93 LSKKFVEVMTEFNKAQ 108 (151)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 374
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=67.11 E-value=1.6e+02 Score=30.54 Aligned_cols=50 Identities=28% Similarity=0.354 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHhh
Q 003779 439 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAA--------ENSSLTDSYNQQR 488 (796)
Q Consensus 439 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~--------ENsaLt~~yNqQ~ 488 (796)
.+.+..||+|..+|-..=-+|-|..++-+.-...||. ||..|.+-+-.-+
T Consensus 10 ~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E~~~L~~~L~~la 67 (211)
T cd07598 10 QERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADTENPSLKQGLKNFA 67 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 4678899999999999888898888888877777765 5555555444444
No 375
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=67.04 E-value=29 Score=29.96 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=22.5
Q ss_pred HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003779 469 LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 503 (796)
Q Consensus 469 l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~ 503 (796)
=++.|..+.+.|..+.++....|+.|+.++...++
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~ 38 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKE 38 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777766666666666666644444
No 376
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=66.84 E-value=1.6e+02 Score=35.92 Aligned_cols=9 Identities=0% Similarity=0.198 Sum_probs=3.6
Q ss_pred ccccccccc
Q 003779 155 SNQFLSLLP 163 (796)
Q Consensus 155 s~~~~~~~p 163 (796)
...+...+|
T Consensus 201 k~~~~~~~~ 209 (782)
T PRK00409 201 KAEYKHAIK 209 (782)
T ss_pred chhhhccCC
Confidence 333333444
No 377
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=66.00 E-value=74 Score=29.61 Aligned_cols=65 Identities=17% Similarity=0.318 Sum_probs=37.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 486 QQRSVVNQLKSEMEKLQEEIKVQLVELESF--RNEYANVRLECNAADERAKILASEVIGLEEKALRL 550 (796)
Q Consensus 486 qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l--~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqL 550 (796)
..+..+.+|.+.+....+-+..-...++.+ +.+....+.+..+-..+.+.|.+++..+...+.-|
T Consensus 32 a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 32 AKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555666 55566666666666666666666666665444433
No 378
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.73 E-value=2.1e+02 Score=31.29 Aligned_cols=71 Identities=20% Similarity=0.329 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779 442 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 512 (796)
Q Consensus 442 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l 512 (796)
...=+.-|.+++.++-.+|-.|+.=..=++.+-..-..+..++++-...+.+|+.+++.+.+.|..+.-.|
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566788999999999999888888888888888888888888888888888888888888776654443
No 379
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=65.57 E-value=1.3e+02 Score=28.66 Aligned_cols=40 Identities=10% Similarity=0.071 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Q 003779 496 SEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 535 (796)
Q Consensus 496 ~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~ 535 (796)
.=+++|.+.|..|...++.+..+.+.++....+|.-..|.
T Consensus 71 ~fl~~L~~~i~~q~~~v~~~~~~ve~~r~~~~ea~~~~k~ 110 (146)
T PRK07720 71 QFVTNLERTIDHYQLLVMQAREQMNRKQQDLTEKNIEVKK 110 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444433333
No 380
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=65.09 E-value=2.9e+02 Score=32.61 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHH
Q 003779 439 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQ 493 (796)
Q Consensus 439 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~q 493 (796)
..++..|++-|+++..+.-.+...++..+.-.+.+..+-..+.+.|...|+..-+
T Consensus 208 ~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~ 262 (650)
T TIGR03185 208 LSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFE 262 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 3455555555555555555555555555555555556666666666666655443
No 381
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=65.07 E-value=3.1e+02 Score=32.94 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=7.9
Q ss_pred HHhhHHHHHHHHH
Q 003779 685 MIHNINALISELA 697 (796)
Q Consensus 685 ~IdSInaLisELa 697 (796)
..|+++.|.+.|.
T Consensus 511 ~~Ea~r~lrt~l~ 523 (726)
T PRK09841 511 AVEAVRALRTSLH 523 (726)
T ss_pred HHHHHHHHHHHhh
Confidence 4566666666653
No 382
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=64.98 E-value=1.9e+02 Score=31.73 Aligned_cols=146 Identities=14% Similarity=0.194 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-Hh------hHHHHHHHHHHHHHHHHHHHHHH
Q 003779 438 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYN-QQ------RSVVNQLKSEMEKLQEEIKVQLV 510 (796)
Q Consensus 438 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yN-qQ------~~~v~qLk~~mE~Lq~Ei~aQ~~ 510 (796)
..+.+..|++-++||.+-+-.-..-|...+++-+.=+.|.+.+-.+|- .+ ...-..|..++.+++.-+..-..
T Consensus 69 ~~~g~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~g~~~Wtr~~S~~~~~~l~~~~~~~~~~L~~A~~ 148 (353)
T cd09236 69 QEDGLERIRASLDDVARLAASDRAILEEAMDILDDEASEDESLRRKFGTDRWTRPDSHEANPKLYTQAAEYEGYLKQAGA 148 (353)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHH
Q 003779 511 ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE 590 (796)
Q Consensus 511 ~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stId 590 (796)
.-+.++.-|+. ...-.+.|..-...|+.-+=..+...+- .++......++.+-.++..|.++|..++..+.
T Consensus 149 sD~~v~~k~~~-------~~~~l~lL~~~~~~l~~~~Ps~~~~~~~--~~~~~~i~~Lr~~l~~l~~l~~eR~~~~~~Lk 219 (353)
T cd09236 149 SDELVRRKLDE-------WEDLIQILTGDERDLENFVPSSRRPSIP--PELERHVRALRVSLEELDRLESRRRRKVERAR 219 (353)
T ss_pred hHHHHHHHHHH-------HHHHHHHHcCCHHHHHHhCCCCCCCCCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 003779 591 AL 592 (796)
Q Consensus 591 aL 592 (796)
..
T Consensus 220 ~k 221 (353)
T cd09236 220 TK 221 (353)
T ss_pred HH
No 383
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=64.71 E-value=45 Score=39.10 Aligned_cols=15 Identities=7% Similarity=0.423 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 003779 490 VVNQLKSEMEKLQEE 504 (796)
Q Consensus 490 ~v~qLk~~mE~Lq~E 504 (796)
.++.++.++++.++.
T Consensus 165 ~~~~~~~~~k~~~~~ 179 (555)
T TIGR03545 165 TAEEIEKSLKAMQQK 179 (555)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 384
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=64.31 E-value=2.7e+02 Score=32.08 Aligned_cols=43 Identities=26% Similarity=0.330 Sum_probs=30.9
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 003779 442 FAALE----QHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSY 484 (796)
Q Consensus 442 faaLq----qhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~y 484 (796)
.+|+| ++|.||..++-+--|.-+.--.++--|..|-+-|+.+.
T Consensus 109 LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQi 155 (561)
T KOG1103|consen 109 LAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQI 155 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHH
Confidence 45555 67889988887776666666677777777777776654
No 385
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=64.25 E-value=30 Score=29.90 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 003779 586 QSTIEALQEEKKMMQSKLRKAS 607 (796)
Q Consensus 586 ~stIdaLQEEKklLqSKLR~as 607 (796)
+..|++|+.+.+.|..||+.+.
T Consensus 31 q~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 31 QRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4689999999999999999765
No 386
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=64.20 E-value=1.8e+02 Score=30.97 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=7.9
Q ss_pred HhhhHHHHHHHHh
Q 003779 475 AENSSLTDSYNQQ 487 (796)
Q Consensus 475 ~ENsaLt~~yNqQ 487 (796)
.+-..+...|+++
T Consensus 155 ~~~~~~~~~Y~~~ 167 (297)
T PF02841_consen 155 KELDELEKEYEQE 167 (297)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhc
Confidence 3445566677766
No 387
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=64.05 E-value=2.9e+02 Score=32.30 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=10.1
Q ss_pred cccCCCCCCcCcccccccc
Q 003779 656 DASGSTLLPESGRLALEGL 674 (796)
Q Consensus 656 ~vs~~pllpe~G~~af~~~ 674 (796)
++.+..+++-.+-.+.+|.
T Consensus 177 ev~~v~~l~~sdtlatgg~ 195 (459)
T KOG0288|consen 177 EVHDVEFLRNSDTLATGGS 195 (459)
T ss_pred ccceeEEccCcchhhhcch
Confidence 3444455555555555665
No 388
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=63.98 E-value=56 Score=28.86 Aligned_cols=59 Identities=24% Similarity=0.491 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 539 EVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 539 EVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 604 (796)
.+..|+++-..|...+++....+.+|+........++. .+..-++.+..+...|+.+|+
T Consensus 13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~-------~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 13 QIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIK-------ELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhh
Confidence 45566777777777777766666666655555555444 444444555555555555554
No 389
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=63.65 E-value=2.4e+02 Score=31.24 Aligned_cols=66 Identities=18% Similarity=0.286 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q 003779 459 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC 526 (796)
Q Consensus 459 LqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~ 526 (796)
|---.+++++=+-.+|+..+.|.++++.-.. -+|...+.++++.|.+|.-.++.++.+++.++...
T Consensus 39 ~yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~--~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i 104 (301)
T PF06120_consen 39 FYQNAEQARQEAIEFADSLDELKEKLKEMSS--TQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQI 104 (301)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567777888888888888888876543 35666666666666666666666666666555443
No 390
>PRK09343 prefoldin subunit beta; Provisional
Probab=63.17 E-value=1.3e+02 Score=28.63 Aligned_cols=94 Identities=15% Similarity=0.146 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHH-------------------HHHHHH
Q 003779 513 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSE-------------------ISSYKK 573 (796)
Q Consensus 513 e~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~E-------------------r~S~~~ 573 (796)
.++..++.+....+.....+.+.+......|+.+..+. -...+||+.+.++ +..+..
T Consensus 3 ~~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~----~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~ 78 (121)
T PRK09343 3 ENIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREI----NKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKE 78 (121)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHH
Q ss_pred HHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 003779 574 KISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSG 610 (796)
Q Consensus 574 q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~g 610 (796)
++..|..+=..+.+..+.|++..+.++..||.+..++
T Consensus 79 r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 79 RKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 391
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=62.41 E-value=3.2e+02 Score=32.19 Aligned_cols=62 Identities=32% Similarity=0.387 Sum_probs=43.8
Q ss_pred HHHHHHHHHhHhhhhHHHhhhhH-HHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 543 LEEKALRLRSNELKLERQLENSQ-SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 543 LEEk~lqLRS~eLKleKElE~l~-~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 604 (796)
|-.++.+||-.+++++--++..+ .-+...-++++-++.+-..-+.+++.|.-|+-.|..+|-
T Consensus 134 Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlE 196 (552)
T KOG2129|consen 134 LSRKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLE 196 (552)
T ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHH
Confidence 45577889988999888888776 666777777777766666666666666666655555544
No 392
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=61.83 E-value=44 Score=37.37 Aligned_cols=35 Identities=20% Similarity=0.541 Sum_probs=26.9
Q ss_pred HHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 003779 572 KKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 606 (796)
Q Consensus 572 ~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~a 606 (796)
..++..+...+..+...+.+|+++++.|+..|++.
T Consensus 374 ~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 374 KEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555566667778888888999999999888876
No 393
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=61.81 E-value=2.3e+02 Score=31.26 Aligned_cols=12 Identities=8% Similarity=0.313 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 003779 458 ALQRSLEASRAL 469 (796)
Q Consensus 458 aLqR~L~~s~~l 469 (796)
.++-.|+++++-
T Consensus 96 ~~~~~l~~A~a~ 107 (390)
T PRK15136 96 DAEQAFEKAKTA 107 (390)
T ss_pred HHHHHHHHHHHH
Confidence 445555555543
No 394
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=61.74 E-value=2.2e+02 Score=30.22 Aligned_cols=80 Identities=33% Similarity=0.411 Sum_probs=40.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh-------hhHHHhhhhHHHHH--------------HHHHHHHhHHHhhh
Q 003779 525 ECNAADERAKILASEVIGLEEKALRLRSNEL-------KLERQLENSQSEIS--------------SYKKKISSLEKERQ 583 (796)
Q Consensus 525 E~naA~ERaK~LAaEVV~LEEk~lqLRS~eL-------KleKElE~l~~Er~--------------S~~~q~ssi~kER~ 583 (796)
++..|.+|+-.=.+..+.|++.+..+.++-- |+.-..+.+.+++. .+.+.+..|+++|+
T Consensus 96 dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~D 175 (205)
T KOG1003|consen 96 ELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERD 175 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHH
Confidence 3445566666666667777777665544332 22223333333332 23344455555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 003779 584 DFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 584 ~l~stIdaLQEEKklLqSKLR 604 (796)
.|...+....++-+-++.-|-
T Consensus 176 dlE~kl~~~k~ky~~~~~eLD 196 (205)
T KOG1003|consen 176 DLEEKLEEAKEKYEEAKKELD 196 (205)
T ss_pred HHHHhhHHHHHHHHHHHHHHH
Confidence 555555555555444444443
No 395
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=61.64 E-value=1.5e+02 Score=28.21 Aligned_cols=70 Identities=20% Similarity=0.198 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHH
Q 003779 527 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 597 (796)
Q Consensus 527 naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKk 597 (796)
......+..||.....++.++..+|...-..-.++..+..+-....+++..+ ..+-+......+||....
T Consensus 37 ~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l-~~~~s~~~l~~~L~~~~~ 106 (150)
T PF07200_consen 37 EELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL-SSNYSPDALLARLQAAAS 106 (150)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHH
Confidence 3334444455555555555555555444444444444444444444444433 333333344444444333
No 396
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=61.64 E-value=5.7 Score=36.29 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=8.6
Q ss_pred HhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003779 475 AENSSLTDSYNQQRSVVNQLKSEMEKLQEE 504 (796)
Q Consensus 475 ~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 504 (796)
.+|..|..+-+.....+.+++...+.|++.
T Consensus 39 ~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~ 68 (131)
T PF05103_consen 39 RENAELKEEIEELQAQLEELREEEESLQRA 68 (131)
T ss_dssp HHHHHHHHHHHCCCCT--------------
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHh
Confidence 455555555555555555555555555554
No 397
>PRK01156 chromosome segregation protein; Provisional
Probab=61.62 E-value=3.6e+02 Score=32.63 Aligned_cols=12 Identities=33% Similarity=0.196 Sum_probs=7.7
Q ss_pred CCccccCCCCcc
Q 003779 227 SNAIALGNGHSF 238 (796)
Q Consensus 227 sn~~~~~~g~s~ 238 (796)
-|+|.-.||.|=
T Consensus 25 i~~I~G~NGsGK 36 (895)
T PRK01156 25 INIITGKNGAGK 36 (895)
T ss_pred eEEEECCCCCCH
Confidence 466666677664
No 398
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=61.55 E-value=45 Score=35.76 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=33.6
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 003779 477 NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN 517 (796)
Q Consensus 477 NsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~a 517 (796)
+..+.++|++....-.+|...++.|+.+|+.|...|+.+..
T Consensus 175 ~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~ 215 (259)
T PF08657_consen 175 LPGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNR 215 (259)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33777888888888888889999999999999988888743
No 399
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=61.24 E-value=2.3e+02 Score=30.15 Aligned_cols=89 Identities=19% Similarity=0.206 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHH-
Q 003779 516 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE- 594 (796)
Q Consensus 516 ~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQE- 594 (796)
..+.-.-...+-+|..+...|..++...-..|..+|..-= .++.+....--++-...+.|+.+...++.|..
T Consensus 52 ~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~-------~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i 124 (291)
T PF10475_consen 52 SREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLK-------SADENLTKSGLEILRLQRKRQNLKKLLEKLEQI 124 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566778888888888888777777777765433 33333333333444555567777777777763
Q ss_pred -HHHHHHHHHHhhccCCC
Q 003779 595 -EKKMMQSKLRKASGSGK 611 (796)
Q Consensus 595 -EKklLqSKLR~asa~gK 611 (796)
.....+.+++.+...|.
T Consensus 125 ~~v~~~~~~l~~ll~~~d 142 (291)
T PF10475_consen 125 KTVQQTQSRLQELLEEGD 142 (291)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 34455666776665554
No 400
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.22 E-value=2.5e+02 Score=30.70 Aligned_cols=21 Identities=14% Similarity=0.412 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhhccCCCc
Q 003779 592 LQEEKKMMQSKLRKASGSGKS 612 (796)
Q Consensus 592 LQEEKklLqSKLR~asa~gKa 612 (796)
+-+..+.|..|+|-+-.+|-+
T Consensus 96 I~~r~~~l~~raRAmq~nG~~ 116 (265)
T COG3883 96 IVERQELLKKRARAMQVNGTA 116 (265)
T ss_pred HHHHHHHHHHHHHHHHHcCCh
Confidence 346667778888866666654
No 401
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=61.15 E-value=3.3e+02 Score=31.99 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 003779 584 DFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 584 ~l~stIdaLQEEKklLqSKLR 604 (796)
+|...-..|..|-.-|...||
T Consensus 176 ~L~~~n~~i~~ea~nLt~ALk 196 (475)
T PRK10361 176 NLQQLNAQMAQEAINLTRALK 196 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 344444455555555555554
No 402
>PRK14148 heat shock protein GrpE; Provisional
Probab=61.11 E-value=66 Score=33.34 Aligned_cols=99 Identities=14% Similarity=0.109 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHH
Q 003779 490 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 569 (796)
Q Consensus 490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~ 569 (796)
.+.+|+.+++.|+.+++...-.+--+.+|++|++.....-.+.++..+.+-+ +..|-.=++
T Consensus 41 e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~-------------------~~~LLpV~D 101 (195)
T PRK14148 41 QLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKF-------------------AKELLPVID 101 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHhhHHh
Confidence 3455555555555555555455556677888877666555555555544322 122223335
Q ss_pred HHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCc
Q 003779 570 SYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKS 612 (796)
Q Consensus 570 S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa 612 (796)
.+.+.+..+... ..+..+-+..++.+.+|.++.....+
T Consensus 102 nlerAl~~~~~~-----~~~~~l~~Gv~mi~k~l~~vL~k~Gv 139 (195)
T PRK14148 102 SIEQALKHEVKL-----EEAIAMKEGIELTAKMLVDILKKNGV 139 (195)
T ss_pred HHHHHHhccccc-----hhHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 555555543221 13455777777878888776554444
No 403
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=60.90 E-value=3.1e+02 Score=34.29 Aligned_cols=104 Identities=17% Similarity=0.223 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 003779 445 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 524 (796)
Q Consensus 445 LqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~ 524 (796)
||..+.|....--.||---+.-.++.|++.+||-.++.-|=+.-..+-+.|.. +.-|..-=..+|+....++...+.
T Consensus 439 Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~---~d~e~~rik~ev~eal~~~k~~q~ 515 (861)
T PF15254_consen 439 LQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQ---FDIETTRIKIEVEEALVNVKSLQF 515 (861)
T ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555565555555666666666778888888888888877766665554432 122222223344555555666666
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 525 ECNAADERAKILASEVIGLEEKALRLR 551 (796)
Q Consensus 525 E~naA~ERaK~LAaEVV~LEEk~lqLR 551 (796)
.+.+|.--+++|--.+-.=.++|.|||
T Consensus 516 kLe~sekEN~iL~itlrQrDaEi~RL~ 542 (861)
T PF15254_consen 516 KLEASEKENQILGITLRQRDAEIERLR 542 (861)
T ss_pred hHHHHHhhhhHhhhHHHHHHHHHHHHH
Confidence 666666666666544444444444443
No 404
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=60.73 E-value=1.8e+02 Score=28.90 Aligned_cols=41 Identities=22% Similarity=0.346 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHhhhH
Q 003779 488 RSVVNQLKSEMEKLQ-EEIKVQLVELESFRNEYANVRLECNA 528 (796)
Q Consensus 488 ~~~v~qLk~~mE~Lq-~Ei~aQ~~~le~l~aErDaAq~E~na 528 (796)
...+.+|+.+|..++ .++.......+.++.|.+..++++++
T Consensus 57 ~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ 98 (177)
T PF07798_consen 57 KAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELRE 98 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666665444 33444444555555555555544443
No 405
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=60.44 E-value=63 Score=35.11 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=13.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHH
Q 003779 579 EKERQDFQSTIEALQEEKKMMQSKL 603 (796)
Q Consensus 579 ~kER~~l~stIdaLQEEKklLqSKL 603 (796)
..||.+|+.....||+|+..|+.-+
T Consensus 220 ~ae~seLq~r~~~l~~~L~~L~~e~ 244 (289)
T COG4985 220 VAEKSELQKRLAQLQTELDALRAEL 244 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3455555555555555555555443
No 406
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=60.40 E-value=84 Score=28.05 Aligned_cols=61 Identities=23% Similarity=0.352 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHH
Q 003779 442 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 502 (796)
Q Consensus 442 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq 502 (796)
+.||++.=++-++-=-+.+.+.+.=+.+-+.-..+|.+|..++|...-.|+.|-+.+++|-
T Consensus 9 l~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 9 LSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4577777777777777888888888888889999999999999999999999999999874
No 407
>PF14992 TMCO5: TMCO5 family
Probab=60.22 E-value=1.3e+02 Score=33.02 Aligned_cols=157 Identities=16% Similarity=0.213 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q 003779 446 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE 525 (796)
Q Consensus 446 qqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E 525 (796)
+.-...||++--.|++-++..-..++.|-.|--......-+. ..+..-.+..+..+ |-++++.-+-|+.|-.+.
T Consensus 10 e~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~----e~e~~~~~~~e~~l--~~le~e~~~LE~~ne~l~ 83 (280)
T PF14992_consen 10 EKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRS----EEEDIISEERETDL--QELELETAKLEKENEHLS 83 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCch----hHHhhhhhchHHHH--HHHHhhhHHHhhhhHhhh
Confidence 334445555555666666666666666655543322222111 11111122222222 444455555555554432
Q ss_pred hhHHHHHHH------HHHHH-------HHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHH
Q 003779 526 CNAADERAK------ILASE-------VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 592 (796)
Q Consensus 526 ~naA~ERaK------~LAaE-------VV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaL 592 (796)
-+-..-|.| .+.-| +...+.++.++.....+.++++.++.++......--.-...+-..++..|.++
T Consensus 84 ~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rm 163 (280)
T PF14992_consen 84 KSVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRM 163 (280)
T ss_pred hhhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221111111 11111 22345666777777777777777776554443222222223333445555556
Q ss_pred HHHHH--HHHHHHHhhcc
Q 003779 593 QEEKK--MMQSKLRKASG 608 (796)
Q Consensus 593 QEEKk--lLqSKLR~asa 608 (796)
.+||. +|..+++++-.
T Consensus 164 E~ekE~~lLe~el~k~q~ 181 (280)
T PF14992_consen 164 EEEKEMLLLEKELSKYQM 181 (280)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 55553 45566665444
No 408
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=59.87 E-value=1.2e+02 Score=31.24 Aligned_cols=44 Identities=11% Similarity=0.133 Sum_probs=30.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHH
Q 003779 517 NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQ 560 (796)
Q Consensus 517 aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKE 560 (796)
.+..........-.-++-.+..+.+.||.+|.++|-...+.+..
T Consensus 175 ~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~~ 218 (221)
T PF05700_consen 175 EELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKEN 218 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444444555666777788888888888888887777665443
No 409
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=59.86 E-value=86 Score=34.16 Aligned_cols=62 Identities=32% Similarity=0.474 Sum_probs=46.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003779 437 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 505 (796)
Q Consensus 437 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei 505 (796)
.|....+-+++.|.|||+|---|+-.-+.-|++++.|-.+|-.|. ..++.|..++-.|.+.-
T Consensus 87 rKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~-------~~le~~~~~l~~~~~~~ 148 (292)
T KOG4005|consen 87 RKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELD-------SELELLRQELAELKQQQ 148 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-------HHHHHHHHHHHhhHHHH
Confidence 456778889999999999999998888888888888877776554 44555555555555543
No 410
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=59.77 E-value=2.3e+02 Score=29.75 Aligned_cols=115 Identities=21% Similarity=0.334 Sum_probs=58.9
Q ss_pred HHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 472 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 551 (796)
Q Consensus 472 sLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLR 551 (796)
++-.-=+.|-.+|..+..++.-++.-=|-|...++.+...+.....-|.+.. .+|.+....--.|+..+..+. .
T Consensus 87 s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK---~hAeekL~~ANeei~~v~~~~---~ 160 (207)
T PF05010_consen 87 SLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALK---AHAEEKLEKANEEIAQVRSKH---Q 160 (207)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh---H
Confidence 3333344566777777777777777777777766666655554443333322 334444333333333332221 1
Q ss_pred hHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHH
Q 003779 552 SNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 592 (796)
Q Consensus 552 S~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaL 592 (796)
..-++++-.|.+..-.+.|+...+.--.+|-.+|..+.|-|
T Consensus 161 ~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeL 201 (207)
T PF05010_consen 161 AELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDEL 201 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233333333444445556666665666666666555544
No 411
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=59.59 E-value=2.5e+02 Score=34.43 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=17.4
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHH
Q 003779 471 ESLAAENSSLTDSYNQQRSVVNQLKS 496 (796)
Q Consensus 471 EsLa~ENsaLt~~yNqQ~~~v~qLk~ 496 (796)
|+|+=..+-||++.-+|+..|..|.-
T Consensus 121 esL~LQvsvLteqVeaQgEKIrDLE~ 146 (861)
T KOG1899|consen 121 ESLQLQVSVLTEQVEAQGEKIRDLET 146 (861)
T ss_pred hhheehHHHHHHHHHHhhhhHHHHHH
Confidence 45555566777888888877765543
No 412
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=59.57 E-value=1.7e+02 Score=28.09 Aligned_cols=110 Identities=13% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003779 442 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 521 (796)
Q Consensus 442 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDa 521 (796)
+..+++.++.+...=-.....+......++.+...-..+...++.-...+.++..-++++-..+..=...+..+..-.+.
T Consensus 102 i~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~i~~~~~~i~~~i~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~ 181 (213)
T PF00015_consen 102 IEEIQEQISQVVESMEESREQIEEGSESVEETSESLEEIAESVEEISDSIEEISESAEEQSESIEQINESIEEISEISEQ 181 (213)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhhhcchhhhhhhcccchhcchhhhhhhhhhhHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 522 VRLECNAADERAKILASEVIGLEEKALRLR 551 (796)
Q Consensus 522 Aq~E~naA~ERaK~LAaEVV~LEEk~lqLR 551 (796)
....+....+.+..|..-...|.+.+-+||
T Consensus 182 ~~~~~~~~~~~~~~l~~~a~~L~~~v~~Fk 211 (213)
T PF00015_consen 182 ISASSEEIAEAAEELSESAEELQELVDRFK 211 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCHHCHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 413
>PRK02793 phi X174 lysis protein; Provisional
Probab=59.46 E-value=87 Score=27.63 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Q 003779 586 QSTIEALQEEKKMMQSKLRKASGS 609 (796)
Q Consensus 586 ~stIdaLQEEKklLqSKLR~asa~ 609 (796)
+..|++|+.+.++|..||+.+..+
T Consensus 35 q~~I~~L~~~l~~L~~rl~~~~~~ 58 (72)
T PRK02793 35 EMEMAKLRDHLRLLTEKLKASQPS 58 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 467899999999999999976544
No 414
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=59.39 E-value=77 Score=32.27 Aligned_cols=21 Identities=10% Similarity=0.188 Sum_probs=9.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHH
Q 003779 516 RNEYANVRLECNAADERAKIL 536 (796)
Q Consensus 516 ~aErDaAq~E~naA~ERaK~L 536 (796)
..|+++++.++..+..+.+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~ 121 (322)
T TIGR01730 101 QADLDDAKAAVEAAQADLEAA 121 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544444443333
No 415
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=59.20 E-value=63 Score=32.04 Aligned_cols=16 Identities=38% Similarity=0.669 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 003779 492 NQLKSEMEKLQEEIKV 507 (796)
Q Consensus 492 ~qLk~~mE~Lq~Ei~a 507 (796)
..++.++++|+.|++.
T Consensus 157 ~~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEK 172 (192)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3444444444444444
No 416
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=59.06 E-value=2.4e+02 Score=29.67 Aligned_cols=27 Identities=26% Similarity=0.198 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 003779 459 LQRSLEASRALSESLAAENSSLTDSYN 485 (796)
Q Consensus 459 LqR~L~~s~~l~EsLa~ENsaLt~~yN 485 (796)
|..++..-+.-+|.+|.=+..|..+-+
T Consensus 58 l~~~w~~~~~~~E~~a~~H~~l~~~L~ 84 (261)
T cd07674 58 FAPMWEVFRVSSDKLALCHLELMRKLN 84 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555554443
No 417
>PRK14154 heat shock protein GrpE; Provisional
Probab=59.03 E-value=2e+02 Score=30.28 Aligned_cols=99 Identities=9% Similarity=0.126 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHH
Q 003779 491 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISS 570 (796)
Q Consensus 491 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S 570 (796)
+..|+.+++.|+++++...-.+--+.+|++|++.....-.+.++..+.+-+. ..|-.=++.
T Consensus 54 ~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~-------------------~~LLpVlDn 114 (208)
T PRK14154 54 REKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLI-------------------TDLLPVADS 114 (208)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHhhHHhH
Confidence 4455666666666666555566667788888777666666666555544321 122223344
Q ss_pred HHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCc
Q 003779 571 YKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKS 612 (796)
Q Consensus 571 ~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa 612 (796)
+.+.+.....+- ..++.+-+-.++...+|.++.....+
T Consensus 115 LeRAL~~~~~~~----~~~~~l~eGvemi~k~l~~vL~k~GV 152 (208)
T PRK14154 115 LIHGLESPASED----PQVKSMRDGMSLTLDLLHNTLAKHGV 152 (208)
T ss_pred HHHHHhcccccc----hhHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 555544332111 23456667777777777776655555
No 418
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.90 E-value=35 Score=32.65 Aligned_cols=56 Identities=23% Similarity=0.363 Sum_probs=47.1
Q ss_pred HHHHHHHH-HHHHHHHHHHHhhhh-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 003779 493 QLKSEMEK-LQEEIKVQLVELESF-RNEYANVRLECNAADERAKILASEVIGLEEKAL 548 (796)
Q Consensus 493 qLk~~mE~-Lq~Ei~aQ~~~le~l-~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~l 548 (796)
..+.|+|. ++..++.|+..|.-+ ++|||..++=+-.++++...|.+-|..||.++.
T Consensus 33 ~~~~evE~~~r~~~q~~lnkLDlVsREEFdvq~qvl~rtR~kl~~Leari~~LEarl~ 90 (103)
T COG2960 33 EVRAEVEKAFRAQLQRQLNKLDLVSREEFDVQRQVLLRTREKLAALEARIEELEARLA 90 (103)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555553 566778888888887 899999999999999999999999999999886
No 419
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=58.83 E-value=2.3e+02 Score=29.45 Aligned_cols=83 Identities=24% Similarity=0.290 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH-HHHHH
Q 003779 465 ASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE---EIKVQLVELESFRNEYANVRLECNAADERAKI-LASEV 540 (796)
Q Consensus 465 ~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~---Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~-LAaEV 540 (796)
+-++++..-+...+.|-+.+.+.......|+.++..|.. .-..|...+..|..|.++++.+-.+..-+++. +-.|-
T Consensus 37 ~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK 116 (206)
T PF14988_consen 37 ERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEK 116 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666666666666555443 33456677888888888877776666555542 34455
Q ss_pred HHHHHHH
Q 003779 541 IGLEEKA 547 (796)
Q Consensus 541 V~LEEk~ 547 (796)
..||.++
T Consensus 117 ~~LEke~ 123 (206)
T PF14988_consen 117 ARLEKEA 123 (206)
T ss_pred HHHHHHH
Confidence 5555555
No 420
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=58.74 E-value=1.5e+02 Score=27.22 Aligned_cols=74 Identities=20% Similarity=0.344 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhh
Q 003779 490 VVNQLKSEMEKLQEEIKVQLVELESF----RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN 563 (796)
Q Consensus 490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l----~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~ 563 (796)
.+.+-...++.-+.+++........| .+.+..|...+......-.....|+..|..++..+++..-|++..++.
T Consensus 29 ~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 29 QLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444 333444444444444444455555555555555554444444444333
No 421
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=58.59 E-value=1.8e+02 Score=28.17 Aligned_cols=65 Identities=14% Similarity=0.279 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 003779 539 EVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 603 (796)
Q Consensus 539 EVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKL 603 (796)
|-..|+.-+..|+.+..-..+.+..|..+++.+.+.+..----+.+|+..+-+.|--|..++-||
T Consensus 38 qkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~dka~lel~l 102 (107)
T PF09304_consen 38 QKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQKDKAILELKL 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 33333333333333333333333334444444444444311112244444444444444444444
No 422
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=58.57 E-value=11 Score=34.36 Aligned_cols=23 Identities=17% Similarity=0.446 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 003779 581 ERQDFQSTIEALQEEKKMMQSKL 603 (796)
Q Consensus 581 ER~~l~stIdaLQEEKklLqSKL 603 (796)
+-..+...++.|+.+......++
T Consensus 108 ~~~~l~~~~~~lk~~~~~~~~~~ 130 (131)
T PF05103_consen 108 EAERLREEIEELKRQAEQFRAQF 130 (131)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445556666666666555554
No 423
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=58.37 E-value=3.1e+02 Score=30.83 Aligned_cols=94 Identities=18% Similarity=0.298 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 003779 445 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 524 (796)
Q Consensus 445 LqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~ 524 (796)
--.||+-|-+=+-++.-.+.-.+.--+.|..+-+.-.++-.-.---+| ..++.|-++.+. ...++..++.
T Consensus 218 WR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN---~qle~l~~eYr~-------~~~~ls~~~~ 287 (359)
T PF10498_consen 218 WRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYIN---NQLEPLIQEYRS-------AQDELSEVQE 287 (359)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHH-------HHHHHHHHHH
Confidence 346777766655555555544444444444444433333333222222 233333333333 3333344444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 003779 525 ECNAADERAKILASEVIGLEEKAL 548 (796)
Q Consensus 525 E~naA~ERaK~LAaEVV~LEEk~l 548 (796)
.++.|.+....+..|.-.+-+++.
T Consensus 288 ~y~~~s~~V~~~t~~L~~IseeLe 311 (359)
T PF10498_consen 288 KYKQASEGVSERTRELAEISEELE 311 (359)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 424
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=58.34 E-value=2.6e+02 Score=29.99 Aligned_cols=118 Identities=16% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHHHHhhH------------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH--
Q 003779 470 SESLAAENSSLTDSYNQQRS------------VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI-- 535 (796)
Q Consensus 470 ~EsLa~ENsaLt~~yNqQ~~------------~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~-- 535 (796)
++.+|.+...+.+.|+.|-. +...-.+...++++|+.....+|+..+--|+.+-.++..|.+.++.
T Consensus 79 t~~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~~Kk~~e~~~~lq~el~~~~~eL~ksKK~Y~~~~~~~~~ar~K~~~a~ 158 (264)
T cd07654 79 LDAVAQSRQNRCEAYRRYISEPAKTGRSAKEQQLKKCTEQLQRAQAEVQQTVRELSKSRKTYFEREQVAHLAREKAADVQ 158 (264)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----------------HHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHH
Q 003779 536 ----------------LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 592 (796)
Q Consensus 536 ----------------LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaL 592 (796)
+.....-+.+|-.+......++..|---.-........+|= -..|-.+|+.|
T Consensus 159 ~~~~k~~~~~~~sk~~~eK~~~K~~~k~~~~~~k~~~akNeYll~L~~aN~~q~kYY-----~~dLP~lld~l 226 (264)
T cd07654 159 AREARSDLSIFQSRTSLQKASVKLSARKAECSSKATAARNDYLLNLAATNAHQDRYY-----QTDLPAIIKAL 226 (264)
T ss_pred HhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHH
No 425
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=58.22 E-value=89 Score=38.81 Aligned_cols=79 Identities=28% Similarity=0.309 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHH-HHHHHH-HHHHHHHHHHH
Q 003779 527 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQS-TIEALQ-EEKKMMQSKLR 604 (796)
Q Consensus 527 naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~s-tIdaLQ-EEKklLqSKLR 604 (796)
.++.||-|...-|-...+++-.+.| .+.|...+|+...+++-.-..+||.-..- .+-+-| ++..+++.+|+
T Consensus 227 qe~eE~qkreeEE~~r~eeEEer~~-------ee~E~~~eEak~kkKekekek~er~KaeGklLTakQK~~~a~aea~l~ 299 (1064)
T KOG1144|consen 227 QEEEERQKREEEERLRREEEEERRR-------EEEEAQEEEAKEKKKEKEKEKKERKKAEGKLLTAKQKEEAALAEAFLK 299 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHhhHHHHHHHHHHHH
Confidence 3445555555555555555544443 23334444555555555555555555442 333444 78889999999
Q ss_pred hhccCCCc
Q 003779 605 KASGSGKS 612 (796)
Q Consensus 605 ~asa~gKa 612 (796)
.+.+.|.+
T Consensus 300 ~ll~sg~~ 307 (1064)
T KOG1144|consen 300 QLLASGGG 307 (1064)
T ss_pred HHHhcCCC
Confidence 98888865
No 426
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=57.98 E-value=65 Score=31.96 Aligned_cols=33 Identities=33% Similarity=0.429 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHH
Q 003779 563 NSQSEISSYKKKISSLEKERQDFQSTIEALQEE 595 (796)
Q Consensus 563 ~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEE 595 (796)
++..|+..+++++...++|..-|.+-.+.|++|
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555555555555555555555555544
No 427
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=57.97 E-value=2.5e+02 Score=29.51 Aligned_cols=80 Identities=19% Similarity=0.274 Sum_probs=36.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 003779 484 YNQQRSVVNQLKSEMEKLQEEIKVQLVELES--------FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL 555 (796)
Q Consensus 484 yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~--------l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eL 555 (796)
|-.+-+++..|-..-..-++-...|+++.+. |-.|.-.-.......++=.--|..|...|...+-..++..=
T Consensus 79 ~~~pl~~Le~l~~~qk~~q~Rm~~qL~~aE~rhrr~i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~~~ 158 (192)
T PF09727_consen 79 YENPLAELEKLMEHQKKMQRRMLEQLAAAEKRHRRTIQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQLEQEKAQQK 158 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555444444444444444445444442 22222222222233344444455566655555555555555
Q ss_pred hhHHHhhh
Q 003779 556 KLERQLEN 563 (796)
Q Consensus 556 KleKElE~ 563 (796)
+++||..+
T Consensus 159 ~~EkE~~K 166 (192)
T PF09727_consen 159 KLEKEHKK 166 (192)
T ss_pred HHHHHHHH
Confidence 55555433
No 428
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=57.97 E-value=2.7e+02 Score=33.30 Aligned_cols=104 Identities=16% Similarity=0.240 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhH------HHHHH-----HHHhhhHHHHHHHHHH-------HHHHHHHHHHHHH
Q 003779 489 SVVNQLKSEMEKLQEEIKVQLVELESFR------NEYAN-----VRLECNAADERAKILA-------SEVIGLEEKALRL 550 (796)
Q Consensus 489 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~------aErDa-----Aq~E~naA~ERaK~LA-------aEVV~LEEk~lqL 550 (796)
-...+|+..+.-++.|+-+-+.+.--++ .|+.+ -..++..+..++..++ .|...++|+...|
T Consensus 159 ~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skL 238 (596)
T KOG4360|consen 159 ELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKL 238 (596)
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666555555555444333333222 22222 2233344444444443 4555666667777
Q ss_pred HhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhh-hHHHHHHHHH
Q 003779 551 RSNELKLERQLENSQSEISSYKKKISSLEKERQ-DFQSTIEALQ 593 (796)
Q Consensus 551 RS~eLKleKElE~l~~Er~S~~~q~ssi~kER~-~l~stIdaLQ 593 (796)
.+.-+-+.|.+.-+++|.+-...-+. ++++|+ ++.-+++.||
T Consensus 239 lsql~d~qkk~k~~~~Ekeel~~~Lq-~~~da~~ql~aE~~Ele 281 (596)
T KOG4360|consen 239 LSQLVDLQKKIKYLRHEKEELDEHLQ-AYKDAQRQLTAELEELE 281 (596)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHH
Confidence 77777777777777777655554444 456654 4555666666
No 429
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=57.87 E-value=2.7e+02 Score=30.00 Aligned_cols=145 Identities=20% Similarity=0.259 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHH
Q 003779 438 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ-------QRSVVNQLKSEMEKLQEEIKVQLV 510 (796)
Q Consensus 438 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNq-------Q~~~v~qLk~~mE~Lq~Ei~aQ~~ 510 (796)
...++..|++-+++|.+-+-.-..-|+....+-+.=+.|.+.+-.+|-. -......|+.++.+++.-+..-..
T Consensus 68 ~~gg~~~l~~~~~~l~~l~~~~~~~l~~~~~~L~~E~~ed~~~R~k~g~~~w~~~~S~~~~~~l~~~~~k~~~~L~~A~~ 147 (342)
T cd08915 68 EEGGLDNIEQSFKELSKLRQNVEELLQECEELLEEEAAEDDQLRAKFGTLRWRRPSSDEAAKELYEKVTKLRGYLEQASN 147 (342)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHH
Q 003779 511 ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE 590 (796)
Q Consensus 511 ~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stId 590 (796)
.-..+..-|+. ...-.+.|..=...|+.-+- +.-...-.++......++.+-.++..+.++|..++..+.
T Consensus 148 sD~~l~~~~~~-------~~~~l~lL~~~~~~l~~~~P---s~~~~~~~~~~~~v~~Lr~~l~~l~~lk~eR~~~~~~lk 217 (342)
T cd08915 148 SDNEVLQCYES-------IDPNLVLLCGGYKELKAFIP---SPYPALDPEVSEVVSSLRPLLNEVSELEKERERFISELE 217 (342)
T ss_pred hhHHHHHHHHH-------HHHHHHHhcCChHHHHHhCC---CccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 003779 591 AL 592 (796)
Q Consensus 591 aL 592 (796)
..
T Consensus 218 ~~ 219 (342)
T cd08915 218 IK 219 (342)
T ss_pred HH
No 430
>PRK10869 recombination and repair protein; Provisional
Probab=57.82 E-value=2.8e+02 Score=32.44 Aligned_cols=12 Identities=17% Similarity=0.058 Sum_probs=6.6
Q ss_pred CCccccCCCCcc
Q 003779 227 SNAIALGNGHSF 238 (796)
Q Consensus 227 sn~~~~~~g~s~ 238 (796)
-|.|+-.||.|-
T Consensus 24 lnvitGetGaGK 35 (553)
T PRK10869 24 MTVITGETGAGK 35 (553)
T ss_pred cEEEECCCCCCh
Confidence 355655566553
No 431
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=57.79 E-value=2.2e+02 Score=28.79 Aligned_cols=74 Identities=23% Similarity=0.212 Sum_probs=38.4
Q ss_pred HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH----HHHHHhhhHHHHHHHHHHHHHHHH
Q 003779 468 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY----ANVRLECNAADERAKILASEVIGL 543 (796)
Q Consensus 468 ~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr----DaAq~E~naA~ERaK~LAaEVV~L 543 (796)
++-++++.+|. +....+..|+.+.++|+.+..........+..++ |..+.++.+...+...|..|+-.|
T Consensus 36 E~Le~~~~~n~-------~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L 108 (158)
T PF09744_consen 36 ELLESLASRNQ-------EHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQL 108 (158)
T ss_pred HHHHHHHHhhh-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666554 4455677788888888765443332222222222 344445555555555555555555
Q ss_pred HHHHH
Q 003779 544 EEKAL 548 (796)
Q Consensus 544 EEk~l 548 (796)
+.++.
T Consensus 109 ~~~~~ 113 (158)
T PF09744_consen 109 ELKLK 113 (158)
T ss_pred HHHhh
Confidence 54443
No 432
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=57.50 E-value=1e+02 Score=37.22 Aligned_cols=42 Identities=29% Similarity=0.338 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 563 NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 563 ~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 604 (796)
+-+-|+++++++---||.+|..-+.-|.+-.||++--|.-||
T Consensus 667 RErmErERLEreRM~ve~eRr~eqeRihreReelRrqqetlr 708 (940)
T KOG4661|consen 667 RERMERERLERERMKVEEERRDEQERIHREREELRRQQETLR 708 (940)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHhhccceee
Confidence 335566667777777889999999999999999888777766
No 433
>PRK14140 heat shock protein GrpE; Provisional
Probab=57.22 E-value=62 Score=33.41 Aligned_cols=99 Identities=8% Similarity=0.205 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHH
Q 003779 490 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 569 (796)
Q Consensus 490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~ 569 (796)
.+++|+.+++.|+.+++...-.+--+.+|++|++.....-.++++..+.+-+. . .+-.=++
T Consensus 38 ~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~--~-----------------~LLpvlD 98 (191)
T PRK14140 38 LLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLA--S-----------------DLLPALD 98 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-----------------HHHHHHH
Confidence 45556666666666655555555666777888777666666666655544221 1 1112223
Q ss_pred HHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCc
Q 003779 570 SYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKS 612 (796)
Q Consensus 570 S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa 612 (796)
.+.+.+..... -..+..+.+..++....|-++.....+
T Consensus 99 nLerAl~~~~~-----~~~~~~i~~Gv~mi~k~l~~~L~k~GV 136 (191)
T PRK14140 99 NFERALQIEAD-----DEQTKSLLKGVEMVHRQLLEALKKEGV 136 (191)
T ss_pred HHHHHHhccCc-----cchHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 33333332111 012355667777777777765554444
No 434
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=57.01 E-value=2.9e+02 Score=30.06 Aligned_cols=97 Identities=19% Similarity=0.251 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH-------HHHHHHHHHHHHHHHHhHhhhhHHHhhhh
Q 003779 492 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI-------LASEVIGLEEKALRLRSNELKLERQLENS 564 (796)
Q Consensus 492 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~-------LAaEVV~LEEk~lqLRS~eLKleKElE~l 564 (796)
....+-+++.|.--..++-.++..+..|..|-.+...|..|.+. -+.++.-|++++.+.+..--|+++.-+..
T Consensus 115 k~~e~~f~KaQKpw~k~~kkv~~aKk~Y~~aCk~e~~A~~~~~~~~~d~~~~~~q~~K~~~k~~k~~~~~~k~~~~Y~~~ 194 (258)
T cd07679 115 KEAEDGFRKAQKPWAKKLKEVEAAKKAYHTACKEEKLATSREANSKADPALNPEQLKKLQDKVEKCKQDVLKTKEKYEKS 194 (258)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888899999999999998888888888652 34688899999999999989988888888
Q ss_pred HHHHHHHHHHHHhHHHhhhhHHHHHHHHHH
Q 003779 565 QSEISSYKKKISSLEKERQDFQSTIEALQE 594 (796)
Q Consensus 565 ~~Er~S~~~q~ssi~kER~~l~stIdaLQE 594 (796)
..+++.|+..|. .++.++.|.+|+
T Consensus 195 l~~L~~~~~~y~------e~m~~~fe~~Q~ 218 (258)
T cd07679 195 LKELDQTTPQYM------ENMEQVFEQCQQ 218 (258)
T ss_pred HHHHHHhhHHHH------HHHHHHHHHHHH
Confidence 888888888887 457889999994
No 435
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=56.85 E-value=1.4e+02 Score=27.07 Aligned_cols=62 Identities=19% Similarity=0.399 Sum_probs=30.1
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHH-------HHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 003779 512 LESFRNEYANVRLECNAADERAKILAS-------EVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 576 (796)
Q Consensus 512 le~l~aErDaAq~E~naA~ERaK~LAa-------EVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~s 576 (796)
|++++.||++.-++++....+...+.. |+..+..++.+|=..+.|+.. .+-+||.++++++.
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~---~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQ---QYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 456666666666666655555544433 344444444444333333322 23444444444443
No 436
>PRK09793 methyl-accepting protein IV; Provisional
Probab=56.32 E-value=3.5e+02 Score=30.78 Aligned_cols=69 Identities=16% Similarity=0.184 Sum_probs=45.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003779 438 HNEDFAALEQHIEDLTQEKFALQR----SLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 506 (796)
Q Consensus 438 ~~~~faaLqqhIeDLT~EKfaLqR----~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~ 506 (796)
..|||..|-..+..|...=-.+.. .-..-...+++++.-+..+..+.++|...+.+....|+++-..+.
T Consensus 241 ~~dE~g~l~~sln~m~~~L~~~i~~i~~~~~~~~~~~~eia~~~~~ls~~~e~qa~~~~~~~~s~~~~~~~~~ 313 (533)
T PRK09793 241 GRNEITAIFASLKTMQQALRGTVSDVRKGSQEMHIGIAEIVAGNNDLSSRTEQQAASLAQTAASMEQLTATVG 313 (533)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356676666666655443222222 222233456778888888899999999999999888888876543
No 437
>PRK14141 heat shock protein GrpE; Provisional
Probab=56.19 E-value=1.3e+02 Score=31.68 Aligned_cols=101 Identities=14% Similarity=0.112 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHH
Q 003779 493 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYK 572 (796)
Q Consensus 493 qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~ 572 (796)
.|..+++.|++++....-.+.-+.+|++|++.....-.++++..+.+-+ +..|-.=++.+.
T Consensus 35 ~~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~-------------------~~dLLpViDnLe 95 (209)
T PRK14141 35 PEPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGF-------------------ARDMLSVSDNLR 95 (209)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHhhhHhHHH
Confidence 3455566666665555555566777888877655555555554444322 122333345556
Q ss_pred HHHHhHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhccCCCc
Q 003779 573 KKISSLEKER-QDFQSTIEALQEEKKMMQSKLRKASGSGKS 612 (796)
Q Consensus 573 ~q~ssi~kER-~~l~stIdaLQEEKklLqSKLR~asa~gKa 612 (796)
+.+..+..+. .+.-..+..+.+..+|.+.+|.++.....+
T Consensus 96 rAl~~~~~~~~~~~~~~~~~l~eGv~mi~k~l~~vLek~GV 136 (209)
T PRK14141 96 RALDAIPAEARAAADAGLKALIEGVEMTERAMLNALERHGV 136 (209)
T ss_pred HHHhccccccccccchhHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 6665543321 111234667778888888888776554444
No 438
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=56.18 E-value=2.4e+02 Score=32.13 Aligned_cols=15 Identities=13% Similarity=0.333 Sum_probs=8.5
Q ss_pred chHHHHHHHHHHhhc
Q 003779 769 DEVVERVLGWIMKLF 783 (796)
Q Consensus 769 devvervlgwimklf 783 (796)
|+..+|+..++.+.|
T Consensus 387 ~~q~~~L~~~L~k~~ 401 (445)
T PRK13428 387 DAQRTRLTEVLSRIY 401 (445)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445566666665554
No 439
>PRK14155 heat shock protein GrpE; Provisional
Probab=55.98 E-value=1.5e+02 Score=31.03 Aligned_cols=100 Identities=12% Similarity=0.129 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHH
Q 003779 492 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY 571 (796)
Q Consensus 492 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~ 571 (796)
..|+.+++.|+.++....-.+--+.+|++|++.....-.++++..+.+-+ ++.|-.=++.+
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~-------------------~~~LLpV~DnL 76 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKF-------------------ARDLLGAADNL 76 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHhhHHhhH
Confidence 45556666666666555555556667777777666665555555544322 22233334555
Q ss_pred HHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCc
Q 003779 572 KKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKS 612 (796)
Q Consensus 572 ~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa 612 (796)
++.+..+.++.. ...++.+-+-.++.+.+|.++.....+
T Consensus 77 erAl~~~~~~~~--~~~~~~i~~Gvemi~k~~~~~L~k~GV 115 (208)
T PRK14155 77 GRATAASPKDSA--DPAVKNFIIGVEMTEKELLGAFERNGL 115 (208)
T ss_pred HHHHhccccccc--chHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 555554433211 123456667777777776665444444
No 440
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.94 E-value=2.8e+02 Score=32.57 Aligned_cols=91 Identities=18% Similarity=0.266 Sum_probs=59.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-----------HHHHHHHhhhHHHHHHH--------HHHHHH
Q 003779 480 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN-----------EYANVRLECNAADERAK--------ILASEV 540 (796)
Q Consensus 480 Lt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~a-----------ErDaAq~E~naA~ERaK--------~LAaEV 540 (796)
+-+..-+|+.+..+-++++-+|+-++..-+++.+++++ +.++.+..|.+-....+ .+..++
T Consensus 22 ~ee~~~rq~a~~qa~q~dl~~lrtql~~a~aeme~ikaia~vsE~tk~EaV~av~rq~~eeVaSlqa~~k~~~~~ye~q~ 101 (542)
T KOG0993|consen 22 KEEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSEPTKSEAVSAVVRQEEEEVASLQASQKSPNPTYECQM 101 (542)
T ss_pred hhhHHHhccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhccccchhHHHhcCCCccHHHHH
Confidence 34556677888888899999999998888888888753 33333333332222222 234455
Q ss_pred HH-HHHHHHHHHhHhhhhHHHhhhhHHHHHH
Q 003779 541 IG-LEEKALRLRSNELKLERQLENSQSEISS 570 (796)
Q Consensus 541 V~-LEEk~lqLRS~eLKleKElE~l~~Er~S 570 (796)
-. ||-+.+++--++=|+++|+..++.-.++
T Consensus 102 ~~~leqertq~qq~~e~~erEv~~l~~llsr 132 (542)
T KOG0993|consen 102 CQNLEQERTQLQQNEEKLEREVKALMELLSR 132 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44 7777777777777777777777655444
No 441
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.80 E-value=3.9e+02 Score=31.22 Aligned_cols=140 Identities=20% Similarity=0.129 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 003779 444 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 523 (796)
Q Consensus 444 aLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq 523 (796)
++.+.|++..+-++.-+ .+..|..|-+-.|=++.|+. -.+.+++.++...+.++. ..-.+.++-.+.++|
T Consensus 27 ~~~~~i~q~~q~~~l~~------~ee~e~~~~~~~A~~~~~~k--kel~~~~~q~~~~k~~~~--~~~~eqi~~~~~~~q 96 (438)
T COG4487 27 ARYKQIEQEDQSRILNT------LEEFEKEANEKRAQYRSAKK--KELSQLEEQLINQKKEQK--NLFNEQIKQFELALQ 96 (438)
T ss_pred HHHHHHHHhhHHHHHHH------HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 45555666555444333 33444444444444455544 223333333322221111 111233333334444
Q ss_pred HhhhHHHH--H-HHHHHHHHHHHHHHHHHHHhHhhh-hHHHhhhhHHHHHHHHHHHH-----------hHHHhhhhHHHH
Q 003779 524 LECNAADE--R-AKILASEVIGLEEKALRLRSNELK-LERQLENSQSEISSYKKKIS-----------SLEKERQDFQST 588 (796)
Q Consensus 524 ~E~naA~E--R-aK~LAaEVV~LEEk~lqLRS~eLK-leKElE~l~~Er~S~~~q~s-----------si~kER~~l~st 588 (796)
-+.+.+.. + ++.=..||+.|+.++..+.-..-+ ++++++.++-+|+..+.+.. +|+.+|......
T Consensus 97 ~e~~~~~~~~~~N~e~dke~~~le~~L~~~~~e~~~~lq~~~e~~~kkre~~k~~~~l~~~~ekK~e~sLe~eR~k~~~q 176 (438)
T COG4487 97 DEIAKLEALELLNLEKDKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQ 176 (438)
T ss_pred HHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44444433 2 223356788888888766666556 66667666666655443332 367788877777
Q ss_pred HHHHH
Q 003779 589 IEALQ 593 (796)
Q Consensus 589 IdaLQ 593 (796)
++.-+
T Consensus 177 l~~~~ 181 (438)
T COG4487 177 LHEAN 181 (438)
T ss_pred HHHhH
Confidence 76654
No 442
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=55.27 E-value=3.1e+02 Score=33.99 Aligned_cols=58 Identities=21% Similarity=0.286 Sum_probs=43.1
Q ss_pred HHHHHHHH-HHHHHHHHH----HHHHHhhhHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHH
Q 003779 454 QEKFALQR-SLEASRALS----ESLAAENSSLTDSYNQQRSVV---NQLKSEMEKLQEEIKVQLVE 511 (796)
Q Consensus 454 ~EKfaLqR-~L~~s~~l~----EsLa~ENsaLt~~yNqQ~~~v---~qLk~~mE~Lq~Ei~aQ~~~ 511 (796)
++||.++| .+.++.... --|-+.-+.|.+-||+.-..+ -.||.+|+.|+.+++|+.+.
T Consensus 485 k~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s 550 (762)
T PLN03229 485 QERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALS 550 (762)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhc
Confidence 46888888 888875411 125556888999999987664 37999999999998866553
No 443
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.19 E-value=4.2e+02 Score=31.39 Aligned_cols=158 Identities=22% Similarity=0.274 Sum_probs=82.6
Q ss_pred hhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh-
Q 003779 439 NEDFAALEQ---HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES- 514 (796)
Q Consensus 439 ~~~faaLqq---hIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~- 514 (796)
.-.|++||+ |.++.+.|.--+++..++ +.+-|.+= ++ ..-..-+++..+...|+.|-++++-.+..|.+
T Consensus 254 ~v~~~ales~~sq~~e~~selE~llklker---l~e~l~dg-ea---yLaKL~~~l~~~~~~~~~ltqqwed~R~pll~k 326 (521)
T KOG1937|consen 254 LVEYKALESKRSQFEEQNSELEKLLKLKER---LIEALDDG-EA---YLAKLMGKLAELNKQMEELTQQWEDTRQPLLQK 326 (521)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhHHH---HHHhcCCh-Hh---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 456777774 556666555444444333 23333221 22 22233456777777888888877777666543
Q ss_pred ---hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHH--HHHHHHHHHhH----HHhhhhH
Q 003779 515 ---FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSE--ISSYKKKISSL----EKERQDF 585 (796)
Q Consensus 515 ---l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~E--r~S~~~q~ssi----~kER~~l 585 (796)
++.+.++--.+..+ --+.+.|.+++..+-+++.+--.---|+.++++.+-.. |..|.+.+.-| -|-++++
T Consensus 327 kl~Lr~~l~~~e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI 405 (521)
T KOG1937|consen 327 KLQLREELKNLETEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDI 405 (521)
T ss_pred HHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 46666664444444 45667777777777777663322233455555554332 33344433332 2333333
Q ss_pred HHHH---HHHHHHHHHHHHHHH
Q 003779 586 QSTI---EALQEEKKMMQSKLR 604 (796)
Q Consensus 586 ~stI---daLQEEKklLqSKLR 604 (796)
.+.+ ..||-|+...+.+|-
T Consensus 406 ~Kil~etreLqkq~ns~se~L~ 427 (521)
T KOG1937|consen 406 VKILEETRELQKQENSESEALN 427 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3332 345555555555554
No 444
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=55.08 E-value=2.5e+02 Score=28.67 Aligned_cols=150 Identities=17% Similarity=0.199 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH------
Q 003779 439 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAA--ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV------ 510 (796)
Q Consensus 439 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~--ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~------ 510 (796)
...+..|.+.++-|+..+-.|--++..=-.-...|+. ++..|..-++.-+.....+..-..+.=.+-...+.
T Consensus 17 e~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~~a~~e~~~l~~~L~ey 96 (216)
T cd07627 17 ESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSLELSKSLSDLLAALAEVQKRIKESLERQALQDVLTLGVTLDEY 96 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----HhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH-------HHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 003779 511 -----ELESFRNEYANVRLECNAADERAKILASEVIGL-------EEKALRLRSNELKLERQLENSQSEISSYKKKISSL 578 (796)
Q Consensus 511 -----~le~l~aErDaAq~E~naA~ERaK~LAaEVV~L-------EEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi 578 (796)
++..+-..|..+.+.+..|..-..++.+....| .+|+.++ ++++..+......+.+++..|
T Consensus 97 ~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~-------~~ei~~~e~~~~~a~~~~e~i 169 (216)
T cd07627 97 IRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSL-------LSELEEAERRASELKKEFEEV 169 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhHHHHHHHHHHHHHH
Q 003779 579 EKERQDFQSTIEALQEEKKM 598 (796)
Q Consensus 579 ~kER~~l~stIdaLQEEKkl 598 (796)
-..+..+|.+...+|..
T Consensus 170 ---s~~~k~El~rF~~~r~~ 186 (216)
T cd07627 170 ---SELIKSELERFERERVE 186 (216)
T ss_pred ---HHHHHHHHHHHHHHHHH
No 445
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.74 E-value=3.9e+02 Score=31.26 Aligned_cols=93 Identities=24% Similarity=0.321 Sum_probs=47.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HHHHHHhHhhh-hHHH
Q 003779 484 YNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE--KALRLRSNELK-LERQ 560 (796)
Q Consensus 484 yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEE--k~lqLRS~eLK-leKE 560 (796)
+|-++.-..+.+.++.+++.+++.+-.+...+..|-=+ +.+ -.++-|...|+. ++..-+-.++. ++++
T Consensus 52 ~~~~A~~~~~~kkel~~~~~q~~~~k~~~~~~~~eqi~-~~~--------~~~q~e~~~~~~~~~~N~e~dke~~~le~~ 122 (438)
T COG4487 52 NEKRAQYRSAKKKELSQLEEQLINQKKEQKNLFNEQIK-QFE--------LALQDEIAKLEALELLNLEKDKELELLEKE 122 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHHHHHHHhhHHhhHHHHHHHHH
Confidence 34366677777778888888776665555444433211 111 223333333333 21111111221 3455
Q ss_pred hhhhHHHHHH-HHHHHHhHHHhhhhH
Q 003779 561 LENSQSEISS-YKKKISSLEKERQDF 585 (796)
Q Consensus 561 lE~l~~Er~S-~~~q~ssi~kER~~l 585 (796)
|..+..|... ...++..+.++|+..
T Consensus 123 L~~~~~e~~~~lq~~~e~~~kkre~~ 148 (438)
T COG4487 123 LDELSKELQKQLQNTAEIIEKKRENN 148 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5555544443 677777888888764
No 446
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=54.51 E-value=1.9e+02 Score=32.38 Aligned_cols=52 Identities=10% Similarity=0.186 Sum_probs=28.1
Q ss_pred hHHHhhhhHHHHHHHHHHHHhH----HHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 003779 557 LERQLENSQSEISSYKKKISSL----EKERQDFQSTIEALQEEKKMMQSKLRKASG 608 (796)
Q Consensus 557 leKElE~l~~Er~S~~~q~ssi----~kER~~l~stIdaLQEEKklLqSKLR~asa 608 (796)
...+++..+......+..+... ...+.-+..+...+|..++.++..++++-.
T Consensus 149 s~~~~~~a~~a~~~A~A~~~~a~~~~~~~~~~l~~~~~~~~~~v~~a~a~~~~A~l 204 (352)
T COG1566 149 SREELDRARAALQAAEAALAAAQAAQKQNLALLESEVSGAQAQVASAEAALDQAKL 204 (352)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHH
Confidence 3455555555555555544322 233444555556666667777777765444
No 447
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=54.49 E-value=2.8e+02 Score=33.04 Aligned_cols=68 Identities=21% Similarity=0.127 Sum_probs=35.8
Q ss_pred CcccCCCCcccCCCCCCCccCCCCCCCCCCCCCccccCCCccccCCCCCCCcccccCCCcccccCCccccccccCCCCCC
Q 003779 265 STTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRAS 344 (796)
Q Consensus 265 ~s~~f~~~~~~~~~e~~~s~S~~~l~s~~~~~~~~Sds~~~~~d~~~Ssnh~P~~S~~~et~~~rSRpSFLDSlnV~Ra~ 344 (796)
++|.|---|++|.. -|+++.||=|+--. +| -.| +|+..-..+++--..|+-+|--||+.
T Consensus 225 ~~~k~a~f~~nnld--~~~~~~~y~~~~~~---------~~---------~~~-~~~~~~~~~~~~a~~~~~~~~~p~~~ 283 (518)
T PF10212_consen 225 GTGKIAAFFSNNLD--FFTSSSGYGPKGAT---------TF---------TNP-LSAECMLQYKKRAAAYMSSLKKPCPE 283 (518)
T ss_pred hhHHHHHHHhcchH--HhhcccccCCCccc---------cc---------CCc-cchHHHHHHHHHHHHHHHHhcCCCCc
Confidence 44444444444433 27777887776511 11 122 23333334555556788888555555
Q ss_pred CCCccccCCccc
Q 003779 345 SGTLFEQTEPER 356 (796)
Q Consensus 345 ~~t~~~~tEp~k 356 (796)
+ +||.|-=.
T Consensus 284 s---vpy~~a~~ 292 (518)
T PF10212_consen 284 S---VPYEEALA 292 (518)
T ss_pred c---CChHHHHh
Confidence 4 77766544
No 448
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=54.43 E-value=3.7e+02 Score=31.28 Aligned_cols=126 Identities=21% Similarity=0.308 Sum_probs=67.7
Q ss_pred cCCcccccccCCCCCCCcCCCCccccCCCccccccCCCcccc-----ccccccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 003779 386 TGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSI-----ENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQ 460 (796)
Q Consensus 386 ~~~~s~~~~sn~~s~~d~s~~p~v~~~n~v~~~~~~~dE~s~-----e~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLq 460 (796)
.+.|..--.+.+|+-|.-. +|-+-++.-| ..+-+|. +-.-|...-..|.---.
T Consensus 44 DGsFlVRdAstm~GdYTLt-------------l~k~g~~KLikI~h~DgKyGF~---d~ltf~SVVelIn~yr~------ 101 (464)
T KOG4637|consen 44 DGSFLVRDASTMQGDYTLT-------------LRKGGNNKLIKIVHRDGKYGFS---DPLTFNSVVELINHYRN------ 101 (464)
T ss_pred CCcEEeeccccCCCceEEE-------------EecCCccceeeeEEecCccCCC---CchhhHHHHHHHHHHhh------
Confidence 4556655556688887654 2223333333 3466675 44556655555554333
Q ss_pred HHHHHHHHHHHHHHHhhhHHH--------HHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhH
Q 003779 461 RSLEASRALSESLAAENSSLT--------DSYNQQRS----VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNA 528 (796)
Q Consensus 461 R~L~~s~~l~EsLa~ENsaLt--------~~yNqQ~~----~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~na 528 (796)
++|+.=|.+|- +.=|.|-. .++.+..++.+.-+.+++--.+++.+..||+++.+|...
T Consensus 102 ----------~SL~~yN~~LDvrLlyPVs~~r~dq~~kp~~~~~~~~~~~~~~~q~lq~~~~~~er~~~~y~~~~qElq~ 171 (464)
T KOG4637|consen 102 ----------ESLAQYNPKLDVRLLYPVSRYRQDQNVKPDFNINAVGKKLREYHQQLQEKSLEYERLYEEYTRTSQELQM 171 (464)
T ss_pred ----------hHHHhhCcccceeeechHHHhhhccccCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555542 22222211 233333333333333444567889999999999999865
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003779 529 ADERAKILASEVIGLEEKAL 548 (796)
Q Consensus 529 A~ERaK~LAaEVV~LEEk~l 548 (796)
+ +++.|+..=..|+.
T Consensus 172 k-----~t~~~afn~tikif 186 (464)
T KOG4637|consen 172 K-----RTAIEAFNETIKIF 186 (464)
T ss_pred H-----HHHHHHhhhHHHHH
Confidence 4 45555555444444
No 449
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=54.09 E-value=30 Score=29.47 Aligned_cols=47 Identities=26% Similarity=0.231 Sum_probs=40.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHH
Q 003779 686 IHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQT 732 (796)
Q Consensus 686 IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qt 732 (796)
|+-|..|--.|..||+.=..+=..+..++.+|..+|..|..+|+-++
T Consensus 3 ~~Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 3 LLRLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888899999988888888899999999999999999988654
No 450
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=53.61 E-value=3.1e+02 Score=29.29 Aligned_cols=122 Identities=14% Similarity=0.111 Sum_probs=58.7
Q ss_pred HHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 003779 470 SESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA-NVRLECNAADERAKILASEVIGLEEKAL 548 (796)
Q Consensus 470 ~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD-aAq~E~naA~ERaK~LAaEVV~LEEk~l 548 (796)
++.+|.....+.+.+|. +.+..|..-+...++..+.+..--..+..|++ .+..++.+|.-.=..+..++....++..
T Consensus 74 te~iA~~~~~~aE~l~~--~i~~~l~~l~~~~~~~~k~~~~~~~kl~~e~~~~~~~~l~K~K~~Y~~~~~~~e~ar~K~~ 151 (234)
T cd07686 74 TEQLSKIMKTHAEELNS--GPLHRLTMMIKDKQQVKKSYIGVHQQIEAEMYKVTKTELEKLKCSYRQLTKEVNSAKEKYK 151 (234)
T ss_pred HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45566666666666663 23333333322233333333333344455554 2455555555555556666655555554
Q ss_pred HHHh---HhhhhHHHhhhhHHHHHHHHHHHHhHHHhh---------hhHHHHHHHHH
Q 003779 549 RLRS---NELKLERQLENSQSEISSYKKKISSLEKER---------QDFQSTIEALQ 593 (796)
Q Consensus 549 qLRS---~eLKleKElE~l~~Er~S~~~q~ssi~kER---------~~l~stIdaLQ 593 (796)
..-. ..=|+++-.+....+..-+..+|-..-..- ..|-.++|-||
T Consensus 152 ~a~~~gk~~~Ka~~k~~~~~~km~~~kN~Yll~i~~aN~~k~~Yy~~~lP~lLd~lQ 208 (234)
T cd07686 152 DAVAKGKETEKARERYDKATMKLHMLHNQYVLAVKGAQLHQHQYYDFTLPLLLDSLQ 208 (234)
T ss_pred HhhhcccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4310 123444555555555555555554332222 23555666666
No 451
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=53.53 E-value=1.2e+02 Score=27.44 Aligned_cols=16 Identities=38% Similarity=0.424 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 003779 530 DERAKILASEVIGLEE 545 (796)
Q Consensus 530 ~ERaK~LAaEVV~LEE 545 (796)
.++++.+..++..||+
T Consensus 73 ~~e~~~lk~~i~~le~ 88 (108)
T PF02403_consen 73 KAEVKELKEEIKELEE 88 (108)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 452
>PRK00295 hypothetical protein; Provisional
Probab=52.94 E-value=1.3e+02 Score=26.39 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 003779 586 QSTIEALQEEKKMMQSKLRKASG 608 (796)
Q Consensus 586 ~stIdaLQEEKklLqSKLR~asa 608 (796)
+..|++|+.+.++|..||+.+..
T Consensus 32 q~~I~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00295 32 QRVIERLQLQMAALIKRQEEMVG 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 46789999999999999997653
No 453
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=52.50 E-value=3.8e+02 Score=30.02 Aligned_cols=68 Identities=16% Similarity=0.191 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHh
Q 003779 514 SFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKE 581 (796)
Q Consensus 514 ~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kE 581 (796)
.+++-..+.+++...-..+.-.+|.+-..|++||.+-|-.-=+.+|-++.|+.=|=.+-.+|+--++|
T Consensus 109 vlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~Eee 176 (338)
T KOG3647|consen 109 VLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEE 176 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 45777788888888888888899999999999999888888888899998887666666666644433
No 454
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=52.44 E-value=57 Score=29.65 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 490 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL----ECNAADERAKILASEVIGLEEKALRL 550 (796)
Q Consensus 490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~----E~naA~ERaK~LAaEVV~LEEk~lqL 550 (796)
.-.+|+.++.+||..++-+.....++..=.....- -.......++.|=.||..||.+|..|
T Consensus 9 ~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~L 73 (88)
T PF14389_consen 9 RRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKL 73 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHH
Confidence 44678888988888888777666665332222111 11244568899999999999999866
No 455
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=52.38 E-value=3.3e+02 Score=30.23 Aligned_cols=13 Identities=31% Similarity=0.383 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHHH
Q 003779 441 DFAALEQHIEDLT 453 (796)
Q Consensus 441 ~faaLqqhIeDLT 453 (796)
+++.|++-|.+++
T Consensus 2 ~~~~~~~q~a~~~ 14 (332)
T TIGR01541 2 QLLLLTQQIADRK 14 (332)
T ss_pred hHHHHHHHHHHHH
Confidence 3455555555554
No 456
>PRK14143 heat shock protein GrpE; Provisional
Probab=52.29 E-value=75 Score=33.82 Aligned_cols=48 Identities=19% Similarity=0.292 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Q 003779 492 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE 539 (796)
Q Consensus 492 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaE 539 (796)
.+|+.+++.|+.+++...-.+--+.+|++|++.....-.++++..+.+
T Consensus 70 ~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~ 117 (238)
T PRK14143 70 AQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKC 117 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555444445566778888877766666666655544
No 457
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=52.29 E-value=4.2e+02 Score=30.54 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=17.8
Q ss_pred HHHHHHHhhHHHHHHhHHHHHH-HHHHHhHHHHHHH
Q 003779 706 ALSSELAQSSKLKDLNNELSRK-LEHQTQRLELLTA 740 (796)
Q Consensus 706 aLa~esr~~~dLk~lN~ELsRK-LE~qtQRLELlts 740 (796)
.|..+.+.+..|+..=..|.+. |.+...|||...+
T Consensus 538 dL~~A~~~~~~L~g~~~~~a~dW~~~ar~~le~~q~ 573 (582)
T PF09731_consen 538 DLDKAARELNQLKGWARKLAADWLKEARRRLEVEQA 573 (582)
T ss_pred CHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555565665544444332 4555555555443
No 458
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=52.18 E-value=1.4e+02 Score=27.88 Aligned_cols=63 Identities=22% Similarity=0.330 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 003779 513 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 576 (796)
Q Consensus 513 e~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~s 576 (796)
..+..+...++.++-....+++.|+.|+-.|.++...-+. ..+...+++++..+....+++..
T Consensus 13 ~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~~~ 75 (106)
T PF05837_consen 13 RSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQRWR 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555556677777888888777777665444 23334444444444444444443
No 459
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=51.62 E-value=3.1e+02 Score=28.69 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=8.7
Q ss_pred HHhhHHHHHHhHHHHHHHHH
Q 003779 711 LAQSSKLKDLNNELSRKLEH 730 (796)
Q Consensus 711 sr~~~dLk~lN~ELsRKLE~ 730 (796)
.+++.+|+++++++..-|..
T Consensus 226 ~~k~~~l~~~~~~~~~~L~~ 245 (264)
T PF06008_consen 226 EKKKQELSEQQNEVSETLKE 245 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 460
>PRK10780 periplasmic chaperone; Provisional
Probab=51.39 E-value=2.5e+02 Score=27.57 Aligned_cols=43 Identities=19% Similarity=0.235 Sum_probs=28.0
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 003779 478 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 520 (796)
Q Consensus 478 saLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD 520 (796)
..+...|.+-......|+.+...++.+++....++.....+|.
T Consensus 32 q~il~~~p~~k~~~~~le~~~~~~q~el~~~~~elq~~~~~~q 74 (165)
T PRK10780 32 GSIFQQVPQRTGVSKQLENEFKGRASELQRMETDLQAKMQKLQ 74 (165)
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777777777776666666555555543
No 461
>PHA02816 hypothetical protein; Provisional
Probab=51.35 E-value=10 Score=35.11 Aligned_cols=29 Identities=34% Similarity=0.524 Sum_probs=25.8
Q ss_pred ccccccceeEeecCCCCCCCCCccccccc
Q 003779 34 QHHLEADRVRVTDLDGAGTSDGPDKAVVS 62 (796)
Q Consensus 34 ~~~le~~~vr~~d~dgag~sdg~~~~v~~ 62 (796)
+.++.-|+|.+.|+|||.-||....+|++
T Consensus 37 kkaisiervtlldsdgandsdsssntvss 65 (106)
T PHA02816 37 KKAISIERVTLLDSDGANDSDSSSNTVSS 65 (106)
T ss_pred hheeeEEEEEEeccCCCCCccccCccccc
Confidence 56677799999999999999999888887
No 462
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=51.27 E-value=4.3e+02 Score=30.33 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 003779 489 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKAL 548 (796)
Q Consensus 489 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~l 548 (796)
-.+.+|+..-++|.+++---+.+....+++.+...--.-+++|+++.|+..+..|.-+|.
T Consensus 99 ~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~ 158 (401)
T PF06785_consen 99 QESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECG 158 (401)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 345556666666555554444455556777776666667788888888888887777773
No 463
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=51.09 E-value=2.8e+02 Score=32.71 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 003779 459 LQRSLEASRALSESLAAENSSLTDSYN 485 (796)
Q Consensus 459 LqR~L~~s~~l~EsLa~ENsaLt~~yN 485 (796)
||.-|+++|+=.+.+|.|---|-++--
T Consensus 264 lQk~Lekar~e~rnvavek~~lerkl~ 290 (575)
T KOG4403|consen 264 LQKRLEKAREEQRNVAVEKLDLERKLD 290 (575)
T ss_pred HHHHHHHHHHhhhchhhhhhhHHHHHh
Confidence 344556666655556655555554443
No 464
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=50.90 E-value=1.8e+02 Score=25.82 Aligned_cols=97 Identities=14% Similarity=0.208 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHhhh
Q 003779 439 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE----EIKVQLVELES 514 (796)
Q Consensus 439 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~----Ei~aQ~~~le~ 514 (796)
..++..+...|+.|-.-.-.+.-....-.++.+.|-.........++.-...+..|......... +...+....+.
T Consensus 14 ~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~~~~q~~~ 93 (117)
T smart00503 14 RANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRASGSASDRTRKAQTEK 93 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhHHHHHHHH
Q ss_pred hHHHHHHHHHhhhHHHHHHHH
Q 003779 515 FRNEYANVRLECNAADERAKI 535 (796)
Q Consensus 515 l~aErDaAq~E~naA~ERaK~ 535 (796)
|..++-.+..+++.+..+.+.
T Consensus 94 L~~~f~~~m~~fq~~Q~~~~~ 114 (117)
T smart00503 94 LRKKFKEVMNEFQRLQRKYRE 114 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 465
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=50.45 E-value=4.9e+02 Score=30.74 Aligned_cols=14 Identities=14% Similarity=0.171 Sum_probs=6.6
Q ss_pred ccccCCCCCCcCcc
Q 003779 655 IDASGSTLLPESGR 668 (796)
Q Consensus 655 ~~vs~~pllpe~G~ 668 (796)
+.+++..+.+..|+
T Consensus 394 ~~Ir~r~~~~~~~~ 407 (489)
T PF05262_consen 394 NGIRGRTFYEREDD 407 (489)
T ss_pred ceeccceeEEcCCC
Confidence 34555555444433
No 466
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=50.29 E-value=50 Score=27.06 Aligned_cols=39 Identities=33% Similarity=0.440 Sum_probs=20.2
Q ss_pred HHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 003779 558 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 603 (796)
Q Consensus 558 eKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKL 603 (796)
|++-+-|+..-+++...+.++.+| .++|+.|+..|..+|
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E-------~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKE-------NEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhh
Confidence 455555555555555555554444 444555555554444
No 467
>PRK04406 hypothetical protein; Provisional
Probab=50.23 E-value=1.7e+02 Score=26.17 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Q 003779 586 QSTIEALQEEKKMMQSKLRKASGS 609 (796)
Q Consensus 586 ~stIdaLQEEKklLqSKLR~asa~ 609 (796)
+..|++|+.+.++|..||+.+.++
T Consensus 38 q~~I~~L~~ql~~L~~rl~~~~~~ 61 (75)
T PRK04406 38 QLLITKMQDQMKYVVGKVKNMDSS 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 467899999999999999976543
No 468
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=50.14 E-value=94 Score=36.30 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=25.7
Q ss_pred HHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 572 KKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 572 ~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 604 (796)
++++..+++.+.+++..|+.|++|.+.|+.++.
T Consensus 89 rqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 89 RRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777888888899999999988883
No 469
>PRK00736 hypothetical protein; Provisional
Probab=50.12 E-value=1.6e+02 Score=25.75 Aligned_cols=24 Identities=8% Similarity=0.207 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Q 003779 586 QSTIEALQEEKKMMQSKLRKASGS 609 (796)
Q Consensus 586 ~stIdaLQEEKklLqSKLR~asa~ 609 (796)
+..|++|+.+.++|..||+....+
T Consensus 32 q~~i~~L~~ql~~L~~rl~~~~~~ 55 (68)
T PRK00736 32 WKTVEQMRKKLDALTERFLSLEEQ 55 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 367889999999999999975543
No 470
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.08 E-value=5.1e+02 Score=30.79 Aligned_cols=38 Identities=11% Similarity=0.159 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Q 003779 498 MEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 535 (796)
Q Consensus 498 mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~ 535 (796)
+++|+..+..-......++.-|+..++-+-.--...+.
T Consensus 295 LaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~ 332 (521)
T KOG1937|consen 295 LAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLRE 332 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44555555555555566677788777665544444433
No 471
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=49.77 E-value=83 Score=39.45 Aligned_cols=64 Identities=16% Similarity=0.107 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779 489 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 552 (796)
Q Consensus 489 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS 552 (796)
..+.-|..++++|+.|++.....+.+..-..-+-..-..+|.++...+..+...|++.+.+|+-
T Consensus 842 ~e~~rLekel~kl~Kel~kl~~~L~n~~f~~kap~~~veka~~kl~~~~~~l~~le~~l~~L~~ 905 (1052)
T PRK14900 842 AETARVDKEIGKVDQDLAVLERKLQNPSFVQNAPPAVVEKDRARAEELREKRGKLEAHRAMLSG 905 (1052)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556677777777777777777776654433333344556666667788888888888888765
No 472
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=49.76 E-value=2.1e+02 Score=26.28 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003779 460 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 504 (796)
Q Consensus 460 qR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 504 (796)
+-.|+.+..-..-|..-|.+..-+|..-+..++.|...+++|.+.
T Consensus 13 ~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k 57 (99)
T PF10046_consen 13 ESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQK 57 (99)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777778889999999999999999999999999888774
No 473
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=49.59 E-value=3.4e+02 Score=28.65 Aligned_cols=58 Identities=16% Similarity=0.202 Sum_probs=32.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 003779 519 YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 576 (796)
Q Consensus 519 rDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~s 576 (796)
+.++..+.....+++..++..|+++--.--.---...|...+.+.++.....++.++.
T Consensus 83 ~~~a~~ea~~il~~a~~~a~~v~~~a~~~a~~~~~~a~~~~e~e~~~~q~~~~~~rl~ 140 (212)
T COG3599 83 KQAAEAEADDILKRASAQAQRVFGKAQYKADRYLEDAKIAQELEDLKRQAQVERQRLR 140 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777888888888888876433222111122555566665554444444433
No 474
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=49.49 E-value=3.9e+02 Score=30.04 Aligned_cols=39 Identities=15% Similarity=0.010 Sum_probs=27.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 003779 517 NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL 555 (796)
Q Consensus 517 aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eL 555 (796)
.|++.++.+.+...+|...+..+-..+|..+..-...-|
T Consensus 151 ~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vL 189 (342)
T PF06632_consen 151 KENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVL 189 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666677777788888888888888776655555
No 475
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=49.44 E-value=1.3e+02 Score=32.49 Aligned_cols=7 Identities=29% Similarity=0.344 Sum_probs=3.6
Q ss_pred hccCCCc
Q 003779 606 ASGSGKS 612 (796)
Q Consensus 606 asa~gKa 612 (796)
++-.|.+
T Consensus 188 AP~dG~V 194 (370)
T PRK11578 188 APMAGEV 194 (370)
T ss_pred CCCCcEE
Confidence 4555554
No 476
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=49.36 E-value=3.6e+02 Score=28.91 Aligned_cols=76 Identities=13% Similarity=0.094 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHH
Q 003779 467 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE-CNAADERAKILASEVIGLEE 545 (796)
Q Consensus 467 ~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E-~naA~ERaK~LAaEVV~LEE 545 (796)
+..+..+-.|-...+.+|....+...+-|+.+-.+++.+-...- ..+|.+-+| +|+|+.+.-....|....|.
T Consensus 69 ~~~a~~aq~e~q~Aa~~yerA~~~h~aAKe~v~laEq~l~~~~~------~~~D~~wqEmLn~A~~kVneAE~ek~~ae~ 142 (239)
T PF05276_consen 69 RRKAKEAQQEAQKAALQYERANSMHAAAKEMVALAEQSLMSDSN------WTFDPAWQEMLNHATQKVNEAEQEKTRAER 142 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc------ccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666777888888888888888888877776443221 123332222 45555555544444444444
Q ss_pred HHH
Q 003779 546 KAL 548 (796)
Q Consensus 546 k~l 548 (796)
.-.
T Consensus 143 eH~ 145 (239)
T PF05276_consen 143 EHQ 145 (239)
T ss_pred HHH
Confidence 433
No 477
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=49.34 E-value=68 Score=34.92 Aligned_cols=62 Identities=19% Similarity=0.324 Sum_probs=37.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHH
Q 003779 438 HNEDFAALEQHIEDLTQEKFALQRSLEA-SRALSESLAAENSSLTDSYNQQRSVVNQLKSEME 499 (796)
Q Consensus 438 ~~~~faaLqqhIeDLT~EKfaLqR~L~~-s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE 499 (796)
+++.|+.|++.|+.+.+.--.+.-.++. -.+....+++...++..+..++...+.+|+..|+
T Consensus 190 ~~~~~~~~~~ave~ia~~~~~~~~~~~~~ls~~~~~~~~~~~~l~~~~~~~~~~f~~L~~~L~ 252 (276)
T PF05929_consen 190 DDEQFADLQQAVEAIAEQQQELEEAFEEQLSEQETQVAELKQELKEQHEALTEDFAALKEKLS 252 (276)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhh
Confidence 4788999999999887765554444432 2344445555555555555555555555555543
No 478
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=48.91 E-value=41 Score=37.23 Aligned_cols=13 Identities=23% Similarity=0.393 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 003779 443 AALEQHIEDLTQE 455 (796)
Q Consensus 443 aaLqqhIeDLT~E 455 (796)
+-|-++|||+...
T Consensus 43 ~~~~~~~E~~Kk~ 55 (370)
T PF02994_consen 43 SYLIMMLEDFKKD 55 (370)
T ss_dssp -------------
T ss_pred hHHHHHHHHhhhh
Confidence 4566778877664
No 479
>PRK14160 heat shock protein GrpE; Provisional
Probab=48.68 E-value=1.1e+02 Score=32.30 Aligned_cols=95 Identities=20% Similarity=0.198 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHH
Q 003779 491 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISS 570 (796)
Q Consensus 491 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S 570 (796)
+.+|+.+++.|+.+++...-.+--+.+||+|++.....-.++++..+.+-+ +..+-.=++.
T Consensus 63 ~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~-------------------~~~LLpVlDn 123 (211)
T PRK14160 63 NNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDV-------------------LKELLPVLDN 123 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHhhHHhH
Confidence 344444444444444444444444455566655555444444444443221 1122233344
Q ss_pred HHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCc
Q 003779 571 YKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKS 612 (796)
Q Consensus 571 ~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa 612 (796)
+.+.+... ...+.+-+..++.+..|.++.....+
T Consensus 124 LerAl~~~--------~~~~~l~~Gv~mi~kql~~vL~k~GV 157 (211)
T PRK14160 124 LERAAAVE--------GSVEDLKKGIEMTVKQFKTSLEKLGV 157 (211)
T ss_pred HHHHHhcc--------cchhHHHHHHHHHHHHHHHHHHHCCC
Confidence 44444321 12244556777777777765554444
No 480
>KOG1574 consensus Predicted cell growth/differentiation regulator, contains RA domain [Extracellular structures]
Probab=48.62 E-value=1.6e+02 Score=33.65 Aligned_cols=119 Identities=17% Similarity=0.175 Sum_probs=81.6
Q ss_pred ccccccCCchhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003779 430 QHGFYSTKHNEDFAA-----LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 504 (796)
Q Consensus 430 ~~~F~s~~~~~~faa-----LqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 504 (796)
+..|..-+++.||.- .+..-+-+.++++.+. |.+-+++.+.|..|-+-+...|+--.- .+ -+|+++.|
T Consensus 196 ~~~~~~ieq~~d~q~~~~~q~~~L~~~~~~~~l~e~--l~q~r~l~~eL~~e~e~~e~~~~p~~e---~~--~~erv~~e 268 (375)
T KOG1574|consen 196 EEEALRIDQDRDFQIESRSQVQTLSETDNQEDLEEY--LKQIRELNKELQAEEELLEAAGPPEPE---AL--LIERVKTE 268 (375)
T ss_pred hhHHhhchhhhhccccchhhHHHhhhhhhHHHHHHH--HHHHHHHHHHHhhhHhhhcccCCCchh---hh--hHHHHhhH
Confidence 444777778888762 1223344456676666 888888888888886655444443221 12 28889999
Q ss_pred HHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 003779 505 IKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL 555 (796)
Q Consensus 505 i~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eL 555 (796)
++.|...-..+..-..++...+..+.-+....+.|+..|-.+..++=..++
T Consensus 269 L~~s~~~~~~l~~~l~av~r~l~~~~~~lq~k~~Ele~l~~el~q~~l~q~ 319 (375)
T KOG1574|consen 269 LATSVKIGLRLERSLEAVNRSLKASLRVLECKKRELETLAKELVQLNLVQF 319 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhccHHHH
Confidence 998888888887778888888888888888888888888777666644433
No 481
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=48.57 E-value=3.3e+02 Score=28.13 Aligned_cols=60 Identities=17% Similarity=0.274 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003779 441 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 504 (796)
Q Consensus 441 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 504 (796)
++..|+--|..|-.-|...-..++....+-+.+..+ ......--..+.+|+..|.+||++
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~----~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEK----EAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHhhhhHHHHHHHHHHHHHHHHHH
Confidence 566777778888877777777777666666666655 112223345566666666666654
No 482
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=48.44 E-value=35 Score=29.06 Aligned_cols=39 Identities=31% Similarity=0.280 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779 514 SFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 552 (796)
Q Consensus 514 ~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS 552 (796)
.+++|+.+-.++.++|..|...|-.|-..|.+++..+|+
T Consensus 12 klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 12 KLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred HHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999999999999988765
No 483
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=48.41 E-value=3.1e+02 Score=27.82 Aligned_cols=110 Identities=21% Similarity=0.275 Sum_probs=80.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHH
Q 003779 467 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV-RLECNAADERAKILASEVIGLEE 545 (796)
Q Consensus 467 ~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaA-q~E~naA~ERaK~LAaEVV~LEE 545 (796)
-.++|+--.|.+.|.....+-...|.+.-.++++|+..-..-+..|.-+...|+.+ ..+.-+|=|.|..++.+...+.+
T Consensus 19 f~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re 98 (159)
T PF05384_consen 19 FEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLRE 98 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666677777777777777777777777777777666666676666666553 34567888999999999999999
Q ss_pred HHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 003779 546 KALRLRSNELKLERQLENSQSEISSYKKKIS 576 (796)
Q Consensus 546 k~lqLRS~eLKleKElE~l~~Er~S~~~q~s 576 (796)
+-.+||-..=.+++.+.++..=+.+++.=++
T Consensus 99 ~E~qLr~rRD~LErrl~~l~~tierAE~l~s 129 (159)
T PF05384_consen 99 REKQLRERRDELERRLRNLEETIERAENLVS 129 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888777778888777766555554433
No 484
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=48.38 E-value=1e+02 Score=31.56 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 003779 527 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 576 (796)
Q Consensus 527 naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~s 576 (796)
..-....+.+..|...|++++.+|+..--.++++++.+..+...+...|+
T Consensus 93 ~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~ 142 (161)
T TIGR02894 93 KTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQ 142 (161)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334555666666666666666655555556666666555555555555
No 485
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=48.32 E-value=81 Score=28.84 Aligned_cols=42 Identities=29% Similarity=0.504 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhH
Q 003779 693 ISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQR 734 (796)
Q Consensus 693 isELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQR 734 (796)
|..|...|.+|-..|-....+|.+|+..|.|++++|...-..
T Consensus 41 i~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~ 82 (89)
T PF13747_consen 41 IQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIET 82 (89)
T ss_pred HHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888999999999999999999999999999865433
No 486
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=48.19 E-value=4.1e+02 Score=29.23 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 502 QEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 550 (796)
Q Consensus 502 q~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqL 550 (796)
.+.+.....+++...+|.+.+..+..++.+|......-+..|+.+-.++
T Consensus 199 ~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l 247 (269)
T PF05278_consen 199 DRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRL 247 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555555555555555555544433
No 487
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=48.17 E-value=4.1e+02 Score=29.23 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 494 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 551 (796)
Q Consensus 494 Lk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLR 551 (796)
..++|+-.+.|+.....+|.....|..-++....+..+|.-.|..|...|...+.-++
T Consensus 198 ~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~ 255 (269)
T PF05278_consen 198 KDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIK 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444455555555555555555555444433
No 488
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=48.01 E-value=2.5e+02 Score=26.60 Aligned_cols=94 Identities=16% Similarity=0.130 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH-------------HHHHHHHHHHHHHHHHHHHHH
Q 003779 444 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRS-------------VVNQLKSEMEKLQEEIKVQLV 510 (796)
Q Consensus 444 aLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~-------------~v~qLk~~mE~Lq~Ei~aQ~~ 510 (796)
+|+.+++=-.++.-.....|++++.-.+.....-..|.+..++-.. .+.....=+.+|...|..|.-
T Consensus 6 rL~~vl~l~~~~ee~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~ 85 (147)
T PRK05689 6 ALATLLDLAEKAEEQAALQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAGMTSSWWINYQQFLQQLEKAITQQRQ 85 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666665555555555566666655555554444444333322211 222333447777777777777
Q ss_pred HhhhhHHHHHHHHHhhhHHHHHHHHHH
Q 003779 511 ELESFRNEYANVRLECNAADERAKILA 537 (796)
Q Consensus 511 ~le~l~aErDaAq~E~naA~ERaK~LA 537 (796)
.++.+..+.+.++....+|.-+-|.|.
T Consensus 86 ~v~~~~~~ve~~r~~~~~a~~~~k~lE 112 (147)
T PRK05689 86 QLTQWTQKVDNARKYWQEKKQRLEALE 112 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777766666553
No 489
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=47.97 E-value=1.2e+02 Score=38.65 Aligned_cols=66 Identities=18% Similarity=0.168 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 003779 491 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 556 (796)
Q Consensus 491 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLK 556 (796)
..++..+++.|++++..|..+++...+.......+..+..+-++.+.++...|++++.++|....+
T Consensus 144 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (1123)
T PRK11448 144 LHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAE 209 (1123)
T ss_pred hhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788888888888777777776666666655565656666777888888888888877765554
No 490
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=47.88 E-value=2e+02 Score=25.49 Aligned_cols=62 Identities=18% Similarity=0.317 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003779 460 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 521 (796)
Q Consensus 460 qR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDa 521 (796)
.+-|.---+...+|-.|-+.|...=-.....|..|+..+..++.++......++..-.+.++
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~ 65 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELES 65 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445556666666666666666666666666666665554444444444444333
No 491
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=47.69 E-value=3.4e+02 Score=28.06 Aligned_cols=136 Identities=18% Similarity=0.208 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHH-HHHHHH-HHHHHHHHHHHHHHHhhhhHHH
Q 003779 441 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSV-VNQLKS-EMEKLQEEIKVQLVELESFRNE 518 (796)
Q Consensus 441 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~-v~qLk~-~mE~Lq~Ei~aQ~~~le~l~aE 518 (796)
-|+-+..-|+++|-+++-.|-.. -.+++|.|-.++..+++.++.+-.. |++|+. ..+-+.
T Consensus 23 ~~~~~~kqve~~~l~~lkqqqd~--itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~---------------- 84 (165)
T PF09602_consen 23 LFASFMKQVEQQTLKKLKQQQDW--ITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSLN---------------- 84 (165)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 46777888999999987776655 6678888999999888888876554 555522 111111
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHH
Q 003779 519 YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKM 598 (796)
Q Consensus 519 rDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKkl 598 (796)
...++=+++.+.|.+-+..|-=. +.++.-=.+.+--+++.+=+.++..+-. +-|+.+++.+|+-=++.|-
T Consensus 85 -----d~inE~t~k~~El~~~i~el~~~--~~Ks~~~~l~q~~~~~eEtv~~~ieqqk---~~r~e~qk~~~~yv~~~k~ 154 (165)
T PF09602_consen 85 -----DSINEWTDKLNELSAKIQELLLS--PSKSSFSLLSQISKQYEETVKQLIEQQK---LTREEWQKVLDAYVEQAKS 154 (165)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHcc--hHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 12234445555555555332211 1111111111111223322233333322 4577888888888888777
Q ss_pred HHHHHH
Q 003779 599 MQSKLR 604 (796)
Q Consensus 599 LqSKLR 604 (796)
.|.-|-
T Consensus 155 ~q~~~~ 160 (165)
T PF09602_consen 155 SQKELA 160 (165)
T ss_pred HHHHHH
Confidence 776554
No 492
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=47.30 E-value=6.7e+02 Score=31.37 Aligned_cols=29 Identities=10% Similarity=0.165 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 003779 516 RNEYANVRLECNAADERAKILASEVIGLE 544 (796)
Q Consensus 516 ~aErDaAq~E~naA~ERaK~LAaEVV~LE 544 (796)
..+.......+..+..+...+..+...++
T Consensus 385 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 413 (1042)
T TIGR00618 385 QQQKTTLTQKLQSLCKELDILQREQATID 413 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444443333
No 493
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=46.87 E-value=1e+02 Score=37.10 Aligned_cols=54 Identities=19% Similarity=0.232 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 003779 525 ECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 578 (796)
Q Consensus 525 E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi 578 (796)
|+.+-..+-++|.+|+.++--++..++-.-...+-||+.|+-+++.++.+++.+
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 334444455566667766666666666555566666666666666666666533
No 494
>PRK04325 hypothetical protein; Provisional
Probab=46.78 E-value=1.7e+02 Score=25.96 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 003779 586 QSTIEALQEEKKMMQSKLRKASG 608 (796)
Q Consensus 586 ~stIdaLQEEKklLqSKLR~asa 608 (796)
+..|++|+.+.++|..||+.+..
T Consensus 36 q~~I~~L~~ql~~L~~rl~~~~~ 58 (74)
T PRK04325 36 QQTLDLLQAQLRLLYQQMRDANP 58 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 36788999999999999997653
No 495
>PRK14162 heat shock protein GrpE; Provisional
Probab=46.51 E-value=1.1e+02 Score=31.89 Aligned_cols=98 Identities=13% Similarity=0.140 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHH
Q 003779 491 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISS 570 (796)
Q Consensus 491 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S 570 (796)
++.|+.+++.|+.++....-.+--+.+|++|++.....-.+.++..+.+-. +..+-.=++.
T Consensus 41 ~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~-------------------~~~LLpV~Dn 101 (194)
T PRK14162 41 VEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSL-------------------AKDVLPAMDN 101 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHhhHHhH
Confidence 334444555555555444445556677888877655555555554443322 1223333455
Q ss_pred HHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCc
Q 003779 571 YKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKS 612 (796)
Q Consensus 571 ~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa 612 (796)
+.+.+...... ..+..+-+..++.+..|.++.....+
T Consensus 102 LerAl~~~~~~-----~~~~~l~~Gvemi~k~l~~vL~~~GV 138 (194)
T PRK14162 102 LERALAVKADD-----EAAKQLKKGVQMTLDHLVKALKDHGV 138 (194)
T ss_pred HHHHHhccccc-----hhHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 55555433211 12355667777777777765554444
No 496
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=46.22 E-value=20 Score=33.73 Aligned_cols=88 Identities=23% Similarity=0.482 Sum_probs=20.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhh
Q 003779 485 NQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENS 564 (796)
Q Consensus 485 NqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l 564 (796)
|.+..-+..|..++..+.+.+...+..+ +..+|+. ==.|....++.++++.++|..-....++++..
T Consensus 22 ~~~~~~Le~L~~dL~~~~~~L~~~Li~l--IN~dY~d-----------Fv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~~ 88 (133)
T PF06148_consen 22 NRRYVSLEDLRKDLRSYSKELKNELIEL--INDDYAD-----------FVSLSTNLVGMDEKIEELRKPLSQFREEVESV 88 (133)
T ss_dssp -----------------------------------------------------------------HHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHH--HHhhHHH-----------HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888888888888777766654 3444443 22467777888888887777666666666666
Q ss_pred HHHHHHHHHHHHhHHHhhhhH
Q 003779 565 QSEISSYKKKISSLEKERQDF 585 (796)
Q Consensus 565 ~~Er~S~~~q~ssi~kER~~l 585 (796)
+.++.....++...-.+|..+
T Consensus 89 ~~~l~~~~~~i~~~l~~~~~l 109 (133)
T PF06148_consen 89 RDELDNTQEEIEDKLEERKEL 109 (133)
T ss_dssp HHS-STTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666555555555444444443
No 497
>PRK14147 heat shock protein GrpE; Provisional
Probab=46.19 E-value=2.7e+02 Score=28.31 Aligned_cols=99 Identities=19% Similarity=0.207 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhH
Q 003779 486 QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ 565 (796)
Q Consensus 486 qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~ 565 (796)
+.......|+.+++.|+.+++...-.+--+.+|++|++.....-.++++..+. ++=+..+-
T Consensus 15 ~~~~~~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~-------------------~~~~~~lL 75 (172)
T PRK14147 15 QNPPETDPLKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQARKFAN-------------------EKLLGELL 75 (172)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHh
Q ss_pred HHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 003779 566 SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 603 (796)
Q Consensus 566 ~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKL 603 (796)
.=++.+.+.+..+..+-..+..=|+-...+..-.-.++
T Consensus 76 pv~DnlerAl~~~~~~~~~l~~Gv~mi~k~l~~~L~~~ 113 (172)
T PRK14147 76 PVFDSLDAGLTAAGTEPSPLRDGLELTYKQLLKVAADN 113 (172)
T ss_pred hhhhHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHC
No 498
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.17 E-value=3e+02 Score=32.34 Aligned_cols=147 Identities=14% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-------
Q 003779 450 EDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV------- 522 (796)
Q Consensus 450 eDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaA------- 522 (796)
+.|++-+..+.-.+-+.-+..+...+.+ .++||+|...-..|+.|+..+..-+.+-+..--.|+......
T Consensus 8 Ka~sRa~ekvlqk~g~~~~TkD~~FE~~---~~~f~~~e~e~~kLqkd~k~y~~av~am~~a~~~l~e~l~eiy~p~~~g 84 (460)
T KOG3771|consen 8 KALNRAPEKVLQKLGKVDETKDEQFEQE---ERNFNKQEAEGKRLQKDLKNYLDAVRAMLAASKKLAESLQEIYEPDWPG 84 (460)
T ss_pred HHhccccHHHHhhcCCcccccchHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Q ss_pred HHhhhHHHHHHHHHHHHHH-HHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 003779 523 RLECNAADERAKILASEVI-GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS 601 (796)
Q Consensus 523 q~E~naA~ERaK~LAaEVV-~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqS 601 (796)
+..+....++...|-.|.. .|.+.++.--..-++-=.++......|.+----|. ..+..++++|+.|+-=..
T Consensus 85 ~~~l~~v~~~~d~l~~d~~~~l~d~vl~pl~~~~~~fpdik~~i~KR~~Kl~DyD-------~~r~~~~kvq~~k~kd~~ 157 (460)
T KOG3771|consen 85 RDYLQAVADNDDLLWKDLDQKLVDQVLLPLDTYLGQFPDIKKAIAKRGRKLVDYD-------SARHSFEKLQAKKKKDEA 157 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhchhHHHHHHhhcchhhhhH-------HHHHHHHHHHHhcCCChh
Q ss_pred HHHhh
Q 003779 602 KLRKA 606 (796)
Q Consensus 602 KLR~a 606 (796)
|+-|+
T Consensus 158 k~~KA 162 (460)
T KOG3771|consen 158 KLAKA 162 (460)
T ss_pred hhHHH
No 499
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=46.00 E-value=6.3e+02 Score=30.72 Aligned_cols=149 Identities=19% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 003779 446 EQHIEDLTQEKFALQRSLEASRALSESLA----AENSSLTDSYN-QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 520 (796)
Q Consensus 446 qqhIeDLT~EKfaLqR~L~~s~~l~EsLa----~ENsaLt~~yN-qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD 520 (796)
++-+..|-.+|..+-+-....+++..+|. .|.-.-..+++ +-...++....+. ...+..+..
T Consensus 344 e~~~r~~e~~kd~~~~~~~~~~~~~~sl~~~~~~E~~~~de~~~~~~~~k~~~~~~~~-------------~~~i~~~~~ 410 (607)
T KOG0240|consen 344 EEWKRKLEKKKDKNVALKEELEKLRNSLKRWRNGEEVKEDEDFSLKEEAKMSAILSEE-------------EMSITKLKG 410 (607)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccCcccchhhhhHHHHHHhhhhhhhh-------------hhhhhhccc
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHH
Q 003779 521 NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQ 600 (796)
Q Consensus 521 aAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLq 600 (796)
.+..+-..-.++.+.|+.++...-.++.+.=--..|++-++-.-.+-....++.|.-++.+=..+|..+++-+.|.+...
T Consensus 411 ~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~ 490 (607)
T KOG0240|consen 411 SLEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVL 490 (607)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhc
Q 003779 601 SKLRKAS 607 (796)
Q Consensus 601 SKLR~as 607 (796)
.+|-.+.
T Consensus 491 ~al~el~ 497 (607)
T KOG0240|consen 491 TALEELA 497 (607)
T ss_pred HHHHHHH
No 500
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=45.38 E-value=2.4e+02 Score=33.43 Aligned_cols=112 Identities=11% Similarity=0.234 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhH
Q 003779 486 QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ 565 (796)
Q Consensus 486 qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~ 565 (796)
+....++.++.++++.++...+-...|.. +.+.+.+++..++.+...=.-=.+.....+++-++ .++++..+
T Consensus 161 ~T~~~~~~~~~~~k~~~~~w~~~~~~Lp~-~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~l-------k~e~~~~~ 232 (555)
T TIGR03545 161 KTVETAEEIEKSLKAMQQKWKKRKKDLPN-KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKL-------KKEGKADK 232 (555)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH-------HHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 003779 566 SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 608 (796)
Q Consensus 566 ~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa 608 (796)
..+.++.++++ .++.++..-+.+|..=.+.=-.+|++..+
T Consensus 233 ~~i~~~~~~l~---~~~~~~~~~~~~lk~ap~~D~~~L~~~~~ 272 (555)
T TIGR03545 233 QKIKSAKNDLQ---NDKKQLKADLAELKKAPQNDLKRLENKYA 272 (555)
T ss_pred HHHHHHHHHHH---HhHHHHHHHHHHHHhccHhHHHHHHHHhC
Done!