Query 003779
Match_columns 796
No_of_seqs 28 out of 30
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 03:45:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003779.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003779hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 98.3 7.2E-07 2.5E-11 104.8 8.5 54 687-740 1112-1165(1184)
2 1i84_S Smooth muscle myosin he 98.2 5.5E-06 1.9E-10 97.4 11.5 51 687-737 1084-1134(1184)
3 1c1g_A Tropomyosin; contractIl 98.2 0.0043 1.5E-07 56.9 33.3 21 443-463 9-29 (284)
4 1c1g_A Tropomyosin; contractIl 98.0 0.0085 2.9E-07 55.0 35.0 110 441-550 21-130 (284)
5 3na7_A HP0958; flagellar bioge 97.4 0.027 9.1E-07 56.2 22.2 127 447-573 18-146 (256)
6 3vkg_A Dynein heavy chain, cyt 97.1 0.035 1.2E-06 72.3 24.1 152 429-580 1887-2077(3245)
7 3na7_A HP0958; flagellar bioge 97.1 0.093 3.2E-06 52.3 21.7 131 454-584 18-150 (256)
8 3vkg_A Dynein heavy chain, cyt 97.1 0.02 6.8E-07 74.4 20.9 151 449-599 1936-2103(3245)
9 3oja_B Anopheles plasmodium-re 97.0 0.0052 1.8E-07 65.6 13.0 49 471-519 445-493 (597)
10 3o0z_A RHO-associated protein 96.9 0.16 5.6E-06 49.6 21.3 156 439-611 5-160 (168)
11 3oja_B Anopheles plasmodium-re 96.8 0.018 6.3E-07 61.4 14.9 45 483-527 450-494 (597)
12 2dfs_A Myosin-5A; myosin-V, in 96.5 0.066 2.3E-06 63.6 18.1 37 515-551 982-1018(1080)
13 2v71_A Nuclear distribution pr 96.3 0.095 3.3E-06 51.9 15.4 99 503-608 10-116 (189)
14 2dfs_A Myosin-5A; myosin-V, in 96.2 0.092 3.1E-06 62.4 17.5 69 522-593 975-1043(1080)
15 2fxo_A Myosin heavy chain, car 95.4 0.74 2.5E-05 42.2 16.3 59 543-601 67-125 (129)
16 3haj_A Human pacsin2 F-BAR; pa 95.4 0.81 2.8E-05 49.2 19.2 103 458-560 78-207 (486)
17 3u1c_A Tropomyosin alpha-1 cha 95.4 0.46 1.6E-05 42.3 14.4 97 489-599 2-98 (101)
18 3abh_A Pacsin2, protein kinase 95.1 0.7 2.4E-05 46.1 16.4 75 458-532 85-179 (312)
19 3u59_A Tropomyosin beta chain; 94.7 0.88 3E-05 40.2 14.0 95 490-598 3-97 (101)
20 2x3v_A Syndapin I, protein kin 94.6 4.3 0.00015 40.9 21.4 129 459-593 77-232 (337)
21 3ol1_A Vimentin; structural ge 94.5 0.66 2.3E-05 42.3 13.1 18 553-570 84-101 (119)
22 3aco_A Pacsin2, protein kinase 94.4 1.4 4.7E-05 45.0 16.6 130 458-593 85-241 (350)
23 3a7p_A Autophagy protein 16; c 94.3 0.54 1.9E-05 45.4 12.6 81 473-553 59-139 (152)
24 4dyl_A Tyrosine-protein kinase 94.1 7.1 0.00024 41.2 21.9 47 675-722 294-340 (406)
25 3hnw_A Uncharacterized protein 93.9 0.4 1.4E-05 45.0 10.8 83 515-605 53-135 (138)
26 2jee_A YIIU; FTSZ, septum, coi 93.8 0.46 1.6E-05 41.8 10.1 66 542-607 10-75 (81)
27 2efk_A CDC42-interacting prote 93.4 6.4 0.00022 38.5 22.1 77 458-534 66-154 (301)
28 3s4r_A Vimentin; alpha-helix, 93.0 0.75 2.6E-05 40.6 10.4 71 531-603 23-93 (93)
29 2v0o_A FCHO2, FCH domain only 92.6 5.3 0.00018 38.6 16.6 37 467-503 79-115 (276)
30 3q8t_A Beclin-1; autophagy, AT 92.4 3.5 0.00012 36.6 13.8 75 514-595 15-89 (96)
31 3oja_A Leucine-rich immune mol 92.3 3.6 0.00012 43.4 16.3 55 430-485 344-398 (487)
32 2v71_A Nuclear distribution pr 91.9 11 0.00037 37.5 19.8 63 569-636 119-181 (189)
33 2eqb_B RAB guanine nucleotide 91.8 3.2 0.00011 37.7 12.9 89 490-598 6-94 (97)
34 3hnw_A Uncharacterized protein 91.6 1.2 4.1E-05 41.9 10.4 63 482-544 68-130 (138)
35 2efl_A Formin-binding protein 91.6 11 0.00037 36.8 22.0 46 490-535 117-162 (305)
36 1ic2_A Tropomyosin alpha chain 91.1 1.6 5.4E-05 37.3 9.8 34 565-605 40-73 (81)
37 2i1j_A Moesin; FERM, coiled-co 90.4 0.2 6.9E-06 55.7 4.6 76 529-604 375-450 (575)
38 3q8t_A Beclin-1; autophagy, AT 90.3 5.2 0.00018 35.5 12.7 91 489-593 4-94 (96)
39 2ocy_A RAB guanine nucleotide 89.8 15 0.00052 35.5 19.1 86 513-604 61-146 (154)
40 2efr_A General control protein 89.7 15 0.00052 35.4 20.5 29 520-548 87-115 (155)
41 3i00_A HIP-I, huntingtin-inter 89.5 1 3.4E-05 41.8 7.8 61 497-567 16-76 (120)
42 1wt6_A Myotonin-protein kinase 89.4 1.6 5.4E-05 38.6 8.4 57 496-552 14-73 (81)
43 2v4h_A NF-kappa-B essential mo 89.3 5.5 0.00019 36.9 12.3 85 517-605 24-108 (110)
44 3m3w_A Pacsin3, protein kinase 88.8 2.8 9.7E-05 42.7 11.3 68 458-525 76-163 (320)
45 1x79_B RAB GTPase binding effe 88.5 6 0.00021 36.6 12.1 101 488-601 5-105 (112)
46 3u59_A Tropomyosin beta chain; 88.5 7 0.00024 34.4 12.2 39 466-504 21-59 (101)
47 3oja_A Leucine-rich immune mol 87.9 18 0.00061 38.1 16.9 24 41-64 35-58 (487)
48 3i2w_A Syndapin, LD46328P; EFC 86.7 12 0.00042 36.8 14.0 134 457-593 63-219 (290)
49 3ol1_A Vimentin; structural ge 86.3 19 0.00066 32.7 14.4 85 440-552 20-104 (119)
50 3swk_A Vimentin; cytoskeleton, 85.7 6.1 0.00021 34.4 10.0 20 580-599 63-82 (86)
51 2fxo_A Myosin heavy chain, car 84.9 23 0.00079 32.4 15.9 28 525-552 63-90 (129)
52 3u1c_A Tropomyosin alpha-1 cha 83.9 23 0.00078 31.5 14.3 62 468-529 9-70 (101)
53 2no2_A HIP-I, huntingtin-inter 83.6 26 0.00087 31.8 14.0 97 448-545 3-103 (107)
54 1ic2_A Tropomyosin alpha chain 83.2 16 0.00054 31.1 11.3 77 492-582 2-78 (81)
55 3tnu_B Keratin, type II cytosk 82.3 23 0.00079 32.2 12.8 63 487-552 34-96 (129)
56 3iox_A AGI/II, PA; alpha helix 82.3 20 0.0007 40.1 14.6 98 494-604 7-104 (497)
57 2i1j_A Moesin; FERM, coiled-co 82.0 4.5 0.00015 45.1 9.6 99 493-594 328-426 (575)
58 3haj_A Human pacsin2 F-BAR; pa 81.9 60 0.0021 34.9 22.0 13 440-452 22-34 (486)
59 1go4_E MAD1 (mitotic arrest de 81.5 2 6.7E-05 39.1 5.3 75 482-556 12-93 (100)
60 3o0z_A RHO-associated protein 81.4 43 0.0015 32.9 18.9 41 560-600 98-138 (168)
61 2ocy_A RAB guanine nucleotide 80.8 42 0.0014 32.4 18.7 117 477-604 5-132 (154)
62 3tnu_B Keratin, type II cytosk 80.4 27 0.00093 31.8 12.6 100 480-589 20-119 (129)
63 3tnu_A Keratin, type I cytoske 80.1 22 0.00076 32.5 11.9 63 487-552 36-98 (131)
64 2wt7_B Transcription factor MA 80.0 11 0.00038 33.7 9.5 50 528-578 39-88 (90)
65 3cvf_A Homer-3, homer protein 78.7 12 0.0004 32.9 9.0 51 515-565 4-54 (79)
66 2v4h_A NF-kappa-B essential mo 78.2 28 0.00095 32.3 11.8 15 531-545 62-76 (110)
67 1deq_A Fibrinogen (alpha chain 77.6 49 0.0017 36.1 15.3 28 444-471 64-91 (390)
68 3tnu_A Keratin, type I cytoske 77.2 26 0.00087 32.1 11.4 96 484-589 26-121 (131)
69 1go4_E MAD1 (mitotic arrest de 76.9 12 0.00041 34.1 8.9 29 582-610 70-98 (100)
70 3ajw_A Flagellar FLIJ protein; 75.9 43 0.0015 29.8 15.3 38 497-534 75-112 (150)
71 4dk0_A Putative MACA; alpha-ha 75.5 8.7 0.0003 38.6 8.5 29 584-612 133-165 (369)
72 2dnx_A Syntaxin-12; snare, HAB 75.2 50 0.0017 30.2 12.9 100 435-537 5-118 (130)
73 2e7s_A RAB guanine nucleotide 74.1 13 0.00043 35.5 8.6 77 519-601 55-131 (135)
74 3bas_A Myosin heavy chain, str 73.7 13 0.00044 32.4 8.0 49 688-736 39-87 (89)
75 2e7s_A RAB guanine nucleotide 73.6 6 0.00021 37.6 6.4 81 514-601 29-117 (135)
76 2b5u_A Colicin E3; high resolu 72.9 49 0.0017 37.4 14.1 16 589-604 397-412 (551)
77 4dk0_A Putative MACA; alpha-ha 72.2 15 0.00052 36.8 9.4 29 516-544 114-142 (369)
78 3mq7_A Bone marrow stromal ant 71.8 48 0.0016 31.2 11.7 71 451-521 33-103 (121)
79 3mq9_A Bone marrow stromal ant 71.2 95 0.0032 32.5 15.4 36 444-479 356-391 (471)
80 3fpp_A Macrolide-specific effl 71.0 11 0.00037 37.6 7.9 8 765-772 324-331 (341)
81 3mq7_A Bone marrow stromal ant 71.0 66 0.0023 30.3 12.4 77 518-604 33-109 (121)
82 2v0o_A FCHO2, FCH domain only 69.9 81 0.0028 30.4 15.5 11 439-449 17-27 (276)
83 3lay_A Zinc resistance-associa 69.9 17 0.0006 35.3 8.8 22 531-552 113-134 (175)
84 3ghg_A Fibrinogen alpha chain; 69.3 46 0.0016 37.8 13.0 71 446-516 63-137 (562)
85 2jee_A YIIU; FTSZ, septum, coi 68.9 24 0.00083 31.1 8.6 69 440-515 6-74 (81)
86 3u06_A Protein claret segregat 68.7 8.5 0.00029 41.5 7.0 61 538-612 3-63 (412)
87 3cvf_A Homer-3, homer protein 68.7 26 0.0009 30.7 8.8 63 524-593 6-68 (79)
88 4etp_A Kinesin-like protein KA 67.9 10 0.00035 40.6 7.3 49 537-585 2-50 (403)
89 3iox_A AGI/II, PA; alpha helix 67.1 80 0.0028 35.5 14.3 32 557-588 71-102 (497)
90 3ajw_A Flagellar FLIJ protein; 66.1 72 0.0025 28.3 17.5 118 457-576 8-126 (150)
91 2v66_B Nuclear distribution pr 65.8 29 0.001 32.0 9.0 44 564-607 15-62 (111)
92 3bas_A Myosin heavy chain, str 65.8 46 0.0016 28.9 9.8 36 515-550 47-82 (89)
93 3mq9_A Bone marrow stromal ant 65.8 1.2E+02 0.0041 31.7 14.8 29 579-607 435-463 (471)
94 3etw_A Adhesin A; antiparallel 65.5 89 0.003 29.2 13.0 24 553-576 58-81 (119)
95 3pe0_A Plectin; cytoskeleton, 64.9 1.2E+02 0.0042 30.6 17.3 25 672-696 244-268 (283)
96 1m1j_B Fibrinogen beta chain; 64.7 1.2E+02 0.0041 33.7 15.0 47 473-519 105-151 (464)
97 1f5n_A Interferon-induced guan 64.6 1.7E+02 0.006 32.9 16.6 18 585-602 565-582 (592)
98 3m9b_A Proteasome-associated A 64.2 4.9 0.00017 41.5 3.9 43 558-600 53-95 (251)
99 1jcd_A Major outer membrane li 64.0 23 0.00078 28.9 7.0 44 483-533 5-48 (52)
100 1m1j_C Fibrinogen gamma chain; 63.9 70 0.0024 34.8 12.9 23 527-549 80-102 (409)
101 2eqb_B RAB guanine nucleotide 63.7 87 0.003 28.4 11.9 56 518-573 6-61 (97)
102 1hjb_A Ccaat/enhancer binding 63.6 20 0.00067 31.7 7.1 41 520-560 25-65 (87)
103 2wt7_A Proto-oncogene protein 63.6 40 0.0014 27.5 8.5 36 569-604 26-61 (63)
104 2p22_C Protein SRN2; endosome, 63.1 1.2E+02 0.0041 29.9 15.0 23 533-555 130-152 (192)
105 3jsv_C NF-kappa-B essential mo 63.1 79 0.0027 28.7 10.9 14 496-509 40-53 (94)
106 2efl_A Formin-binding protein 63.1 1.1E+02 0.0039 29.6 22.8 26 441-466 15-50 (305)
107 4emc_A Monopolin complex subun 62.8 17 0.00059 36.3 7.3 55 450-504 2-56 (190)
108 1deq_A Fibrinogen (alpha chain 62.6 96 0.0033 34.0 13.5 116 440-556 67-197 (390)
109 3i00_A HIP-I, huntingtin-inter 62.5 46 0.0016 30.8 9.6 65 441-522 16-80 (120)
110 3a7p_A Autophagy protein 16; c 61.7 88 0.003 30.4 11.7 57 533-596 70-126 (152)
111 4gkw_A Spindle assembly abnorm 61.4 1.2E+02 0.0041 29.3 21.6 83 436-539 7-89 (167)
112 3ibp_A Chromosome partition pr 61.2 1.7E+02 0.0059 31.1 19.6 36 691-726 224-259 (302)
113 3tul_A Cell invasion protein S 60.9 67 0.0023 31.3 10.7 60 491-550 22-88 (158)
114 3ghg_A Fibrinogen alpha chain; 60.3 1.1E+02 0.0038 34.8 13.9 7 444-450 50-56 (562)
115 1m1j_B Fibrinogen beta chain; 60.0 2E+02 0.0068 32.0 15.7 27 480-506 126-152 (464)
116 1jcd_A Major outer membrane li 59.4 26 0.0009 28.6 6.6 29 470-498 6-34 (52)
117 2efk_A CDC42-interacting prote 59.3 1.3E+02 0.0046 29.2 23.6 27 440-466 7-43 (301)
118 2efr_A General control protein 59.1 1.3E+02 0.0045 29.0 22.6 99 492-590 38-136 (155)
119 3fpp_A Macrolide-specific effl 58.6 23 0.0008 35.2 7.6 16 516-531 113-128 (341)
120 2b5u_A Colicin E3; high resolu 58.6 2.5E+02 0.0084 32.0 20.4 38 561-605 411-448 (551)
121 1gu4_A CAAT/enhancer binding p 57.2 27 0.00094 30.2 6.8 44 520-563 25-68 (78)
122 1joc_A EEA1, early endosomal a 55.8 22 0.00075 32.5 6.3 40 698-737 4-43 (125)
123 2no2_A HIP-I, huntingtin-inter 55.5 1.2E+02 0.0041 27.4 14.8 16 584-599 86-101 (107)
124 3m9b_A Proteasome-associated A 54.8 12 0.00042 38.6 4.9 31 471-501 64-94 (251)
125 3m91_A Proteasome-associated A 54.7 29 0.001 28.2 6.1 35 467-501 15-49 (51)
126 2oto_A M protein; helical coil 53.9 1.4E+02 0.0048 27.7 19.0 110 451-564 26-140 (155)
127 2j69_A Bacterial dynamin-like 52.4 3E+02 0.01 31.1 18.0 15 438-452 308-322 (695)
128 3htk_A Structural maintenance 52.3 80 0.0027 24.9 8.3 47 459-505 10-56 (60)
129 3fhn_A Protein transport prote 52.3 44 0.0015 38.8 9.4 29 440-468 10-38 (706)
130 3jsv_C NF-kappa-B essential mo 51.5 1.3E+02 0.0046 27.2 10.4 26 580-605 61-86 (94)
131 3qh9_A Liprin-beta-2; coiled-c 51.0 42 0.0014 29.8 6.9 44 533-576 21-64 (81)
132 1wle_A Seryl-tRNA synthetase; 50.9 1.2E+02 0.0041 33.7 12.2 8 772-779 440-447 (501)
133 3cve_A Homer protein homolog 1 50.7 70 0.0024 27.6 8.2 43 523-565 6-48 (72)
134 3qh9_A Liprin-beta-2; coiled-c 50.6 1.2E+02 0.0042 26.8 9.8 45 559-603 19-63 (81)
135 1oxz_A ADP-ribosylation factor 50.3 2E+02 0.0067 28.4 12.9 120 439-579 32-158 (186)
136 3i2w_A Syndapin, LD46328P; EFC 50.2 43 0.0015 33.0 7.8 100 443-545 117-216 (290)
137 1t2k_D Cyclic-AMP-dependent tr 49.7 79 0.0027 25.5 8.0 50 456-505 10-59 (61)
138 2yy0_A C-MYC-binding protein; 49.1 23 0.00079 28.6 4.7 30 712-741 19-48 (53)
139 3abh_A Pacsin2, protein kinase 48.7 2.1E+02 0.0072 28.3 21.0 17 432-451 24-40 (312)
140 4ani_A Protein GRPE; chaperone 48.1 46 0.0016 33.5 7.7 98 491-612 61-158 (213)
141 2w83_C C-JUN-amino-terminal ki 47.9 71 0.0024 28.1 7.8 65 469-547 10-74 (77)
142 2w83_C C-JUN-amino-terminal ki 47.8 1.2E+02 0.0041 26.7 9.2 65 535-606 6-70 (77)
143 1t2k_D Cyclic-AMP-dependent tr 47.3 1.1E+02 0.0037 24.6 8.8 35 569-603 25-59 (61)
144 2ke4_A CDC42-interacting prote 46.6 1.2E+02 0.0041 27.2 9.3 83 431-515 6-88 (98)
145 3swk_A Vimentin; cytoskeleton, 46.5 1.5E+02 0.005 25.8 12.0 38 514-551 46-83 (86)
146 1wt6_A Myotonin-protein kinase 46.3 88 0.003 27.7 8.2 43 543-599 29-71 (81)
147 2lw1_A ABC transporter ATP-bin 46.0 94 0.0032 26.6 8.4 65 484-550 18-82 (89)
148 3efg_A Protein SLYX homolog; x 45.2 45 0.0016 28.7 6.2 24 586-609 41-64 (78)
149 3twe_A Alpha4H; unknown functi 45.2 23 0.0008 25.4 3.6 22 583-604 4-25 (27)
150 2wt7_A Proto-oncogene protein 44.6 93 0.0032 25.4 7.7 51 456-506 11-61 (63)
151 2f1m_A Acriflavine resistance 44.6 1.1E+02 0.0038 29.5 9.6 15 516-530 97-111 (277)
152 2xdj_A Uncharacterized protein 44.4 1.2E+02 0.0039 26.6 8.7 13 489-501 41-53 (83)
153 1jnm_A Proto-oncogene C-JUN; B 44.3 43 0.0015 27.2 5.7 51 456-506 10-60 (62)
154 1naf_A ADP-ribosylation factor 44.2 2.3E+02 0.0077 27.3 11.9 102 462-578 33-141 (158)
155 3a5t_A Transcription factor MA 44.1 5.3 0.00018 36.6 0.3 50 528-578 49-98 (107)
156 2dq0_A Seryl-tRNA synthetase; 44.1 1.5E+02 0.0051 32.3 11.5 9 773-781 411-419 (455)
157 1ik9_A DNA repair protein XRCC 43.6 2.6E+02 0.0088 27.9 13.4 34 470-503 134-167 (213)
158 1wle_A Seryl-tRNA synthetase; 43.2 2.1E+02 0.0072 31.7 12.6 26 582-607 125-150 (501)
159 3aco_A Pacsin2, protein kinase 42.7 2.8E+02 0.0097 28.1 21.8 17 432-451 24-40 (350)
160 3q0x_A Centriole protein; cent 42.3 47 0.0016 33.8 6.8 39 478-516 167-205 (228)
161 4fi5_A Nucleoprotein; structur 40.3 1.8E+02 0.0063 27.1 9.7 70 445-514 24-94 (113)
162 2zuo_A MVP, major vault protei 40.1 5.6E+02 0.019 30.7 20.3 32 410-450 628-659 (861)
163 1l8d_A DNA double-strand break 39.2 1.9E+02 0.0064 25.0 12.3 38 568-605 66-103 (112)
164 3ni0_A Bone marrow stromal ant 39.1 1.9E+02 0.0065 26.5 9.4 60 517-576 25-84 (99)
165 3cve_A Homer protein homolog 1 38.6 1.9E+02 0.0066 24.9 10.3 47 527-580 3-49 (72)
166 2yy0_A C-MYC-binding protein; 38.6 44 0.0015 27.0 4.8 33 573-605 19-51 (53)
167 1ez3_A Syntaxin-1A; three heli 38.5 2E+02 0.0068 25.0 10.1 14 441-454 13-26 (127)
168 4etp_A Kinesin-like protein KA 38.3 69 0.0024 34.3 7.7 36 513-548 6-41 (403)
169 3ghg_C Fibrinogen gamma chain; 38.2 1.7E+02 0.0059 32.0 10.8 24 527-550 80-103 (411)
170 2f1m_A Acriflavine resistance 37.4 82 0.0028 30.4 7.5 25 588-612 113-141 (277)
171 1jnm_A Proto-oncogene C-JUN; B 37.4 82 0.0028 25.5 6.3 16 583-598 39-54 (62)
172 3qne_A Seryl-tRNA synthetase, 37.3 94 0.0032 34.5 8.7 25 584-608 82-106 (485)
173 4e61_A Protein BIM1; EB1-like 37.0 84 0.0029 28.9 6.9 16 561-576 34-49 (106)
174 3hhm_B NISH2 P85alpha; PI3KCA, 36.5 4.2E+02 0.014 28.3 15.8 52 540-591 207-258 (373)
175 3vp9_A General transcriptional 35.8 80 0.0027 28.4 6.5 62 512-576 16-85 (92)
176 2lw1_A ABC transporter ATP-bin 34.9 1.9E+02 0.0066 24.7 8.6 63 676-738 14-82 (89)
177 3s4r_A Vimentin; alpha-helix, 34.5 1.9E+02 0.0064 25.5 8.6 37 558-594 55-91 (93)
178 2x3v_A Syndapin I, protein kin 34.2 3.7E+02 0.013 26.9 23.1 17 432-451 15-31 (337)
179 2zqm_A Prefoldin beta subunit 34.1 2.3E+02 0.0077 24.4 11.1 40 476-515 7-46 (117)
180 2b9c_A Striated-muscle alpha t 34.0 3.1E+02 0.011 25.9 11.1 20 587-606 101-120 (147)
181 1ci6_A Transcription factor AT 34.0 1.5E+02 0.005 24.3 7.4 36 568-603 25-60 (63)
182 3lss_A Seryl-tRNA synthetase; 34.0 2.5E+02 0.0086 31.2 11.4 19 566-584 118-136 (484)
183 4e61_A Protein BIM1; EB1-like 33.8 1.1E+02 0.0039 28.1 7.2 20 585-604 30-49 (106)
184 4h22_A Leucine-rich repeat fli 33.6 2E+02 0.0067 26.5 8.7 10 510-519 82-91 (103)
185 3mtu_A Tropomyosin alpha-1 cha 33.3 85 0.0029 26.7 6.0 32 573-604 9-40 (75)
186 2avr_X Adhesion A; antiparalle 32.9 3.1E+02 0.011 25.7 13.6 60 536-596 49-108 (119)
187 3onj_A T-snare VTI1; helix, HA 32.9 2.5E+02 0.0085 24.5 12.1 24 559-582 72-96 (97)
188 3or1_C Sulfite reductase GAMA; 32.8 17 0.00059 33.0 1.8 15 776-790 77-91 (105)
189 4ani_A Protein GRPE; chaperone 32.7 2.6E+02 0.0088 28.1 10.3 30 536-565 64-93 (213)
190 2w6a_A ARF GTPase-activating p 32.3 1.1E+02 0.0038 26.0 6.3 33 573-605 20-52 (63)
191 3u06_A Protein claret segregat 32.2 1E+02 0.0034 33.3 7.8 36 517-552 3-38 (412)
192 2v66_B Nuclear distribution pr 32.2 3.1E+02 0.01 25.3 15.1 13 492-504 6-18 (111)
193 3uul_A Utrophin; spectrin repe 32.0 2.2E+02 0.0075 23.6 10.6 29 490-518 37-65 (118)
194 2dq0_A Seryl-tRNA synthetase; 32.0 2.8E+02 0.0096 30.2 11.2 24 584-607 80-103 (455)
195 2oto_A M protein; helical coil 31.8 3.1E+02 0.011 25.4 17.3 14 472-485 26-39 (155)
196 3htk_A Structural maintenance 31.6 1.9E+02 0.0064 22.7 8.1 14 518-531 34-47 (60)
197 2nrj_A HBL B protein; enteroto 31.5 3.8E+02 0.013 28.1 11.8 30 477-506 164-193 (346)
198 3gp4_A Transcriptional regulat 31.2 3.1E+02 0.011 25.1 11.1 22 529-550 79-100 (142)
199 2dq3_A Seryl-tRNA synthetase; 31.2 1.4E+02 0.0046 32.2 8.6 12 772-783 389-400 (425)
200 3mtu_A Tropomyosin alpha-1 cha 30.9 1.2E+02 0.004 25.9 6.5 32 489-520 2-33 (75)
201 3va9_A Sensor histidine kinase 30.7 3.1E+02 0.011 25.0 12.0 31 526-556 118-148 (164)
202 1ses_A Seryl-tRNA synthetase; 30.5 1.7E+02 0.0059 31.4 9.2 70 526-608 30-99 (421)
203 1grj_A GREA protein; transcrip 30.2 1.8E+02 0.0061 27.3 8.2 13 491-503 11-23 (158)
204 4avm_A Bridging integrator 2; 30.1 4.1E+02 0.014 26.1 12.5 35 566-600 118-152 (237)
205 2p4v_A Transcription elongatio 30.1 1.2E+02 0.0042 28.5 7.2 13 491-503 11-23 (158)
206 3m91_A Proteasome-associated A 29.8 1.4E+02 0.0048 24.2 6.3 20 531-550 9-28 (51)
207 3lss_A Seryl-tRNA synthetase; 29.1 1.5E+02 0.0052 32.8 8.7 27 582-608 113-139 (484)
208 3swf_A CGMP-gated cation chann 29.1 2.6E+02 0.0089 24.4 8.3 52 494-555 5-56 (74)
209 4i0x_B ESAT-6-like protein MAB 29.0 2.7E+02 0.0091 23.7 10.9 53 440-492 11-66 (103)
210 2xdj_A Uncharacterized protein 28.6 2.9E+02 0.01 24.0 9.6 44 553-603 21-64 (83)
211 2ic9_A Nucleocapsid protein; h 28.5 3.4E+02 0.012 24.7 10.2 66 445-510 7-73 (96)
212 2f23_A Anti-cleavage anti-GREA 28.5 99 0.0034 28.9 6.2 61 439-505 9-69 (156)
213 1m1j_C Fibrinogen gamma chain; 27.8 6.2E+02 0.021 27.6 13.2 12 440-451 38-49 (409)
214 1ci6_A Transcription factor AT 27.1 2.2E+02 0.0074 23.3 7.2 24 527-550 19-42 (63)
215 2k48_A Nucleoprotein; viral pr 27.1 3.8E+02 0.013 24.8 11.4 68 442-509 34-102 (107)
216 2ve7_A Kinetochore protein HEC 26.0 1E+02 0.0035 31.9 6.4 14 589-602 219-232 (315)
217 2p4v_A Transcription elongatio 25.8 1.4E+02 0.0049 28.1 6.8 31 439-469 8-39 (158)
218 1gqe_A Release factor 2, RF2; 25.8 6.2E+02 0.021 27.4 12.3 42 510-551 25-71 (365)
219 2yfa_A MCPS, methyl-accepting 25.4 4.3E+02 0.015 24.8 19.8 24 431-454 39-63 (258)
220 2dq3_A Seryl-tRNA synthetase; 25.3 92 0.0032 33.4 6.0 72 525-607 31-102 (425)
221 3s9g_A Protein hexim1; cyclin 25.2 3.7E+02 0.013 24.8 8.9 49 450-505 33-81 (104)
222 1lwu_C Fibrinogen gamma chain; 25.2 1.6E+02 0.0055 31.1 7.7 50 491-547 7-56 (323)
223 1nkp_B MAX protein, MYC proto- 25.0 30 0.001 29.2 1.8 59 439-504 18-76 (83)
224 1f5n_A Interferon-induced guan 24.9 7.8E+02 0.027 27.7 20.3 28 578-605 535-562 (592)
225 2qdq_A Talin-1; dimerisation d 24.7 83 0.0029 25.8 4.2 26 546-571 9-34 (50)
226 2z5i_A TM, general control pro 24.7 96 0.0033 25.0 4.6 38 490-527 13-50 (52)
227 4ad8_A DNA repair protein RECN 24.5 6.7E+02 0.023 26.8 14.6 13 490-502 228-240 (517)
228 1joc_A EEA1, early endosomal a 24.5 3E+02 0.01 25.0 8.5 24 490-513 19-42 (125)
229 3he5_B Synzip2; heterodimeric 24.5 2.5E+02 0.0086 22.6 6.8 18 556-573 28-45 (52)
230 4b4t_M 26S protease regulatory 24.3 48 0.0016 35.9 3.7 13 700-712 228-240 (434)
231 2zvf_A Alanyl-tRNA synthetase; 24.3 1.8E+02 0.0062 26.6 7.1 34 712-745 32-65 (171)
232 3qwe_A GMIP, GEM-interacting p 24.0 6.2E+02 0.021 26.3 17.8 41 514-554 116-156 (279)
233 1fxk_A Prefoldin; archaeal pro 24.0 3.3E+02 0.011 23.0 10.7 37 479-515 5-41 (107)
234 1nkp_A C-MYC, MYC proto-oncoge 23.9 52 0.0018 28.6 3.1 63 439-501 22-85 (88)
235 1gd2_E Transcription factor PA 23.7 2.1E+02 0.0073 24.3 6.7 9 540-548 31-39 (70)
236 3l4q_C Phosphatidylinositol 3- 23.6 5.3E+02 0.018 25.3 15.4 52 542-593 100-151 (170)
237 2dgc_A Protein (GCN4); basic d 23.3 1.1E+02 0.0038 25.2 4.8 37 700-736 25-61 (63)
238 2zvf_A Alanyl-tRNA synthetase; 23.1 1.3E+02 0.0043 27.6 5.8 10 684-693 157-166 (171)
239 2z5i_A TM, general control pro 22.7 2E+02 0.0068 23.1 6.0 31 525-555 6-36 (52)
240 1t3j_A Mitofusin 1; coiled coi 22.2 3E+02 0.01 24.9 7.8 12 447-458 16-27 (96)
241 2kes_A Synphilin-1; synphillin 22.1 1.5E+02 0.0053 23.8 5.2 32 545-576 4-35 (48)
242 3s9g_A Protein hexim1; cyclin 22.1 4.5E+02 0.016 24.2 8.9 25 479-503 34-58 (104)
243 2xnx_M M protein, M1-BC1; cell 22.0 2.7E+02 0.0093 26.9 7.8 25 579-603 114-138 (146)
244 1o3x_A ADP-ribosylation factor 21.9 2.8E+02 0.0097 26.0 7.9 103 462-579 24-133 (140)
245 2wq1_A General control protein 21.6 1.3E+02 0.0045 22.9 4.4 28 443-470 3-30 (33)
246 2kes_A Synphilin-1; synphillin 21.5 1.8E+02 0.0063 23.4 5.5 35 532-566 5-39 (48)
247 2zqm_A Prefoldin beta subunit 21.2 3.9E+02 0.013 22.9 11.8 40 569-608 73-112 (117)
248 1hjb_A Ccaat/enhancer binding 21.1 4.3E+02 0.015 23.3 9.2 35 574-608 44-78 (87)
249 3kp1_E D-ornithine aminomutase 21.1 36 0.0012 32.0 1.7 42 438-484 3-44 (121)
250 3zwh_Q Myosin-9; Ca-binding pr 20.9 33 0.0011 27.4 1.1 27 522-548 4-30 (45)
251 4dzn_A Coiled-coil peptide CC- 20.3 1.6E+02 0.0054 22.0 4.5 19 490-508 3-21 (33)
252 2f23_A Anti-cleavage anti-GREA 20.2 2.8E+02 0.0095 25.8 7.5 21 528-548 50-70 (156)
253 4b4t_K 26S protease regulatory 20.0 1.2E+02 0.0041 32.8 5.6 13 699-711 218-230 (428)
254 2xnx_M M protein, M1-BC1; cell 20.0 1.2E+02 0.004 29.4 4.9 24 584-607 84-107 (146)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.32 E-value=7.2e-07 Score=104.78 Aligned_cols=54 Identities=30% Similarity=0.273 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 003779 687 HNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTA 740 (796)
Q Consensus 687 dSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELlts 740 (796)
..+..-+.+|+.+.+++...|..+.....++.....+|.++|+.++++||-+-.
T Consensus 1112 ~~le~~l~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Ieel~~ 1165 (1184)
T 1i84_S 1112 NNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLD 1165 (1184)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344455555555555555555555666666667777777777777765433
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.17 E-value=5.5e-06 Score=97.44 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHH
Q 003779 687 HNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLEL 737 (796)
Q Consensus 687 dSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLEL 737 (796)
..+..-+.+++.+.+.+...|........+++...++|..+++.+..+|+-
T Consensus 1084 ~~le~~l~~le~el~~l~~~le~l~~~~~~le~~l~~Le~eie~L~eeLee 1134 (1184)
T 1i84_S 1084 AELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLES 1134 (1184)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444455555555555555555444443
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.16 E-value=0.0043 Score=56.95 Aligned_cols=21 Identities=10% Similarity=-0.013 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003779 443 AALEQHIEDLTQEKFALQRSL 463 (796)
Q Consensus 443 aaLqqhIeDLT~EKfaLqR~L 463 (796)
.+|+.-|+.+..+.-.|...+
T Consensus 9 ~~l~~~~~~~~~~~~~l~~~l 29 (284)
T 1c1g_A 9 QMLKLDKENALDRADEAEADK 29 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHH
Confidence 334444444433333333333
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.02 E-value=0.0085 Score=54.97 Aligned_cols=110 Identities=7% Similarity=0.044 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 003779 441 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 520 (796)
Q Consensus 441 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD 520 (796)
....|+..|+++..+.-.+...+.....-.+.+..+-..+....+.....+..+...+.+++.++......+..+..+..
T Consensus 21 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (284)
T 1c1g_A 21 RADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELD 100 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555566666666666666666666666666666565666666666665555555555555555555
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 521 NVRLECNAADERAKILASEVIGLEEKALRL 550 (796)
Q Consensus 521 aAq~E~naA~ERaK~LAaEVV~LEEk~lqL 550 (796)
....++..+.++...+..++..++.++..+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 130 (284)
T 1c1g_A 101 RAQERLATALQKLEEAEKAADESERGMKVI 130 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554444444444444444444444444433
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.42 E-value=0.027 Score=56.23 Aligned_cols=127 Identities=13% Similarity=0.151 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHH
Q 003779 447 QHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF--RNEYANVRL 524 (796)
Q Consensus 447 qhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l--~aErDaAq~ 524 (796)
..|+.|..++-.|...|+...+-...|.+.-.++...+......+..++.+++.++.-|+.....+.++ .-||++...
T Consensus 18 ~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~k 97 (256)
T 3na7_A 18 KEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNI 97 (256)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 344555555555544444444433444444444444444444444444444444444444444444444 457888888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHH
Q 003779 525 ECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKK 573 (796)
Q Consensus 525 E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~ 573 (796)
+...+..+...|..++..+++++-.++...-.++.+++.+..++...++
T Consensus 98 Eie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~ 146 (256)
T 3na7_A 98 EEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELES 146 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888776655544445555544444433333
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.13 E-value=0.035 Score=72.26 Aligned_cols=152 Identities=16% Similarity=0.253 Sum_probs=101.9
Q ss_pred cccccccCCchhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhhhHHHHHHHH
Q 003779 429 NQHGFYSTKHNEDFAA-----LEQHIEDLTQEKFALQRSLEASRALSESLA-----------------AENSSLTDSYNQ 486 (796)
Q Consensus 429 ~~~~F~s~~~~~~faa-----LqqhIeDLT~EKfaLqR~L~~s~~l~EsLa-----------------~ENsaLt~~yNq 486 (796)
+-|+|.++..==+|=. |.+..+++...+--|+.||+|=.+.+++++ .|.+++...--.
T Consensus 1887 ~R~~yvTP~syLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~ 1966 (3245)
T 3vkg_A 1887 GRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQ 1966 (3245)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777666643 567778888888888888888665554443 233444444444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003779 487 QRSVVNQLKSEMEKLQEEIKVQLVELESF-----------------RNEYANVRLECNAADERAKILASEVIGLEEKALR 549 (796)
Q Consensus 487 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l-----------------~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lq 549 (796)
....+++-|..+++.+.++++|..+.+.. +.+.+.|+.++.+|.++.+....++..||+++.+
T Consensus 1967 ~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~ 2046 (3245)
T 3vkg_A 1967 DQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIAT 2046 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666666655555544443 4566777888888888888888888888888888
Q ss_pred HHhHhhhhHHHhhhhHHHHHHHHHHHHhHHH
Q 003779 550 LRSNELKLERQLENSQSEISSYKKKISSLEK 580 (796)
Q Consensus 550 LRS~eLKleKElE~l~~Er~S~~~q~ssi~k 580 (796)
|+.+-=++-+|.+.++.|++.+.+++..+++
T Consensus 2047 L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~ 2077 (3245)
T 3vkg_A 2047 YKEEYATLIRETEQIKTESSKVKNKVDRSIA 2077 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777666666777777777777777665443
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.07 E-value=0.093 Score=52.33 Aligned_cols=131 Identities=11% Similarity=0.112 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH--HhhhHHHH
Q 003779 454 QEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR--LECNAADE 531 (796)
Q Consensus 454 ~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq--~E~naA~E 531 (796)
.+-..|...+..-.+-.+.|.++-..+.+++..-...+..++.++.+++.+|..-...++..+.-.+++. .++.+...
T Consensus 18 ~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~k 97 (256)
T 3na7_A 18 KEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNI 97 (256)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 3444444444444555666666666666666666666666777666666666665555555544444322 23444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhh
Q 003779 532 RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD 584 (796)
Q Consensus 532 RaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~ 584 (796)
....+..++..||++++++.-..=.++.+++.+..++.....++..+..+++.
T Consensus 98 Eie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~ 150 (256)
T 3na7_A 98 EEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVEN 150 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555554444444555555555555555555555444444
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.06 E-value=0.02 Score=74.44 Aligned_cols=151 Identities=13% Similarity=0.194 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-----------------HHH
Q 003779 449 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ-----------------LVE 511 (796)
Q Consensus 449 IeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ-----------------~~~ 511 (796)
|++|..|=-.++-.|++.++-++.+-.+-..=+...+++...|.+++.+++.-+.++++. +.+
T Consensus 1936 V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~ 2015 (3245)
T 3vkg_A 1936 VKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREE 2015 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHH
Confidence 444444444444455555555555544444445555555555555555555444444332 235
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHH
Q 003779 512 LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA 591 (796)
Q Consensus 512 le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIda 591 (796)
|+.+.+|.+.|+..+.++.+..+.|..++..|+++...+....-+++.+++.....+.++.+=+..+..|+..=...++.
T Consensus 2016 l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~ 2095 (3245)
T 3vkg_A 2016 VEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSEN 2095 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHH
Confidence 66677777777777777777777777777777777777777777777777777777777777777777777766666666
Q ss_pred HHHHHHHH
Q 003779 592 LQEEKKMM 599 (796)
Q Consensus 592 LQEEKklL 599 (796)
|+++.+.|
T Consensus 2096 l~~~~~~L 2103 (3245)
T 3vkg_A 2096 FNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 66655443
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.02 E-value=0.0052 Score=65.64 Aligned_cols=49 Identities=20% Similarity=0.220 Sum_probs=24.0
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003779 471 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 519 (796)
Q Consensus 471 EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 519 (796)
...+..++.+.+..|+....+..|+.++.+.++.++.+..+++..+.++
T Consensus 445 ~~~~~~~e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~ 493 (597)
T 3oja_B 445 GVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRY 493 (597)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 3334466666666666666666666666666666666655555544433
No 10
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.93 E-value=0.16 Score=49.61 Aligned_cols=156 Identities=19% Similarity=0.211 Sum_probs=103.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 003779 439 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE 518 (796)
Q Consensus 439 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aE 518 (796)
++-+..||.-|+||...=-+-..+.++.++..-.|......+ -..+.+|++.+-.|+....+-.-.+..|.+.
T Consensus 5 neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~-------E~~~rELq~~~~~L~~~k~~Leke~~~LQa~ 77 (168)
T 3o0z_A 5 NEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQL-------ESLNRELQERNRILENSKSQTDKDYYQLQAI 77 (168)
T ss_dssp -----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888887654444555666666655554444444 4444455555555555544444556777777
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHH
Q 003779 519 YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKM 598 (796)
Q Consensus 519 rDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKkl 598 (796)
++.=+..+..+.++.+.|..-|..|++++-++|..+-|+.-+...|.+.+...+++..+++ || |-=|+|.
T Consensus 78 L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e---------id-~~~eLKa 147 (168)
T 3o0z_A 78 LEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE---------ID-LNYKLKS 147 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HH-HHHHHHH
Confidence 7777888899999999999999999999999999999988888888887777777666552 11 1135666
Q ss_pred HHHHHHhhccCCC
Q 003779 599 MQSKLRKASGSGK 611 (796)
Q Consensus 599 LqSKLR~asa~gK 611 (796)
||.++-+=...++
T Consensus 148 lQ~~~eqE~~~H~ 160 (168)
T 3o0z_A 148 LQQRLEQEVNEHK 160 (168)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 6666665443333
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.79 E-value=0.018 Score=61.43 Aligned_cols=45 Identities=22% Similarity=0.220 Sum_probs=29.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Q 003779 483 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECN 527 (796)
Q Consensus 483 ~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n 527 (796)
...+....+++++.++.+|++++..+...+..+..+.++-+....
T Consensus 450 ~~e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~ 494 (597)
T 3oja_B 450 GNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYR 494 (597)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 334444577777788888888887777777777777777655544
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.48 E-value=0.066 Score=63.57 Aligned_cols=37 Identities=16% Similarity=0.085 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 515 FRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 551 (796)
Q Consensus 515 l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLR 551 (796)
...+....+.+..+.++....+..|...||+++.++.
T Consensus 982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444443
No 13
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.33 E-value=0.095 Score=51.89 Aligned_cols=99 Identities=14% Similarity=0.214 Sum_probs=64.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHH----HHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 003779 503 EEIKVQLVELESFRNEYANVRLECNAADERAKILASE----VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 578 (796)
Q Consensus 503 ~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaE----VV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi 578 (796)
.+|.-.......++.+|+.++.++++=.+-++.|-+| +..+|.++..|++..-++..++ ++++.+|...
T Consensus 10 ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~-------e~~k~K~~~~ 82 (189)
T 2v71_A 10 EETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEV-------EALKEKLEHQ 82 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 3444444455566667777778888888888777655 4556666666655555555554 4444555444
Q ss_pred HHh----hhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 003779 579 EKE----RQDFQSTIEALQEEKKMMQSKLRKASG 608 (796)
Q Consensus 579 ~kE----R~~l~stIdaLQEEKklLqSKLR~asa 608 (796)
.++ =..|+..|..|++++..|+.+||.+--
T Consensus 83 ~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq 116 (189)
T 2v71_A 83 YAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 116 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 446777888888999999999995543
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.24 E-value=0.092 Score=62.38 Aligned_cols=69 Identities=16% Similarity=0.228 Sum_probs=32.1
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 003779 522 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 593 (796)
Q Consensus 522 Aq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ 593 (796)
...|..++.++.+.|..|+..|++++.++...--.++...+.++ +....++..+++|-..|+..++.|.
T Consensus 975 ~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~---~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 975 SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK---HETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555544332222222222222 2333555555555555555555544
No 15
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.45 E-value=0.74 Score=42.21 Aligned_cols=59 Identities=14% Similarity=0.280 Sum_probs=34.0
Q ss_pred HHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 003779 543 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS 601 (796)
Q Consensus 543 LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqS 601 (796)
.|+++-+|......++..+..+.............++.++..++..+..|.+....+..
T Consensus 67 ~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 67 AEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555666666666666666666666666655543
No 16
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=95.43 E-value=0.81 Score=49.22 Aligned_cols=103 Identities=15% Similarity=0.124 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-hH-------------------HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 003779 458 ALQRSLEASRALSESLAAENSSLTDSYNQQ-RS-------------------VVNQLKSEMEKLQEEIKVQLVELESFRN 517 (796)
Q Consensus 458 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ-~~-------------------~v~qLk~~mE~Lq~Ei~aQ~~~le~l~a 517 (796)
.|..+...-..-++.+|..+..+......+ -. .-..++..+++++++++.+...|+..+.
T Consensus 78 tl~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~K~~~~~~kerK~~~~~~~k~qk~l~~~~~~l~KaKk 157 (486)
T 3haj_A 78 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKK 157 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555666777777666666322 11 1344555677888888888888999999
Q ss_pred HHHHHHHhhhHHHHHHHHH-------HHHHHHHHHHHHHHHhHhhhhHHH
Q 003779 518 EYANVRLECNAADERAKIL-------ASEVIGLEEKALRLRSNELKLERQ 560 (796)
Q Consensus 518 ErDaAq~E~naA~ERaK~L-------AaEVV~LEEk~lqLRS~eLKleKE 560 (796)
.|..+-.+...|..+.+.. ..++..++.++.+.+..--+++++
T Consensus 158 ~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~~~ 207 (486)
T 3haj_A 158 AHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEK 207 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888888887665543 245555555555444433333333
No 17
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=95.43 E-value=0.46 Score=42.27 Aligned_cols=97 Identities=18% Similarity=0.270 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHH
Q 003779 489 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI 568 (796)
Q Consensus 489 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er 568 (796)
+-|..+|.+|..|+.+ .+.....++.+...+-.+..++..+-.||..|..++..+ +.+++.+....
T Consensus 2 ~~MdaIKkKm~~lk~e-------~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~l-------E~eld~~ee~L 67 (101)
T 3u1c_A 2 GHMDAIKKKMQMLKLD-------KENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVT-------EDSRDQVLEEL 67 (101)
T ss_dssp CHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 4578888888666554 233344444444555555555555556666665555533 66777777777
Q ss_pred HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 003779 569 SSYKKKISSLEKERQDFQSTIEALQEEKKMM 599 (796)
Q Consensus 569 ~S~~~q~ssi~kER~~l~stIdaLQEEKklL 599 (796)
..+..++....+-+......+.+|+--..+|
T Consensus 68 ~ea~~kLee~ek~~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 68 HKSEDSLLFAEENAAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776666777766555554
No 18
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=95.13 E-value=0.7 Score=46.07 Aligned_cols=75 Identities=15% Similarity=0.121 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh-HHH-------------------HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 003779 458 ALQRSLEASRALSESLAAENSSLTDSYNQQR-SVV-------------------NQLKSEMEKLQEEIKVQLVELESFRN 517 (796)
Q Consensus 458 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~-~~v-------------------~qLk~~mE~Lq~Ei~aQ~~~le~l~a 517 (796)
.|..+...-..-++.+|..+..+.+..+.+- ..+ ..+...+++++.++..+...++..+.
T Consensus 85 tl~~aw~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~k~~~~~~ke~k~~~~~~~k~~k~~~~~~~~l~KaK~ 164 (312)
T 3abh_A 85 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKK 164 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCTTSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666666666666665332 222 23444556666666666666777777
Q ss_pred HHHHHHHhhhHHHHH
Q 003779 518 EYANVRLECNAADER 532 (796)
Q Consensus 518 ErDaAq~E~naA~ER 532 (796)
.|+.+-.+...|..+
T Consensus 165 ~Y~~~c~e~e~a~~~ 179 (312)
T 3abh_A 165 AHHAACKEEKLAISR 179 (312)
T ss_dssp HHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777766666665543
No 19
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.66 E-value=0.88 Score=40.19 Aligned_cols=95 Identities=20% Similarity=0.319 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHH
Q 003779 490 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 569 (796)
Q Consensus 490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~ 569 (796)
.|..+|..|..|+.+ .+......+.+...+-.|..++..+-.||..|..++..+ +.+++.+.....
T Consensus 3 ~md~iKkKm~~lk~e-------~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~l-------E~eld~~~e~l~ 68 (101)
T 3u59_A 3 SMEAIKKKMQMLKLD-------KENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGT-------EDEVEKYSESVK 68 (101)
T ss_dssp THHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 467788888555554 233333344444444445555555555555555555433 555666666666
Q ss_pred HHHHHHHhHHHhhhhHHHHHHHHHHHHHH
Q 003779 570 SYKKKISSLEKERQDFQSTIEALQEEKKM 598 (796)
Q Consensus 570 S~~~q~ssi~kER~~l~stIdaLQEEKkl 598 (796)
.+..++....+.+......+.+|+--..+
T Consensus 69 ~a~~kLe~~ek~~~~AE~evasLnRriql 97 (101)
T 3u59_A 69 EAQEKLEQAEKKATDAEAEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666555555555544433
No 20
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=94.59 E-value=4.3 Score=40.86 Aligned_cols=129 Identities=16% Similarity=0.167 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHh-hHHH-------------------HHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 003779 459 LQRSLEASRALSESLAAENSSLTDSYNQQ-RSVV-------------------NQLKSEMEKLQEEIKVQLVELESFRNE 518 (796)
Q Consensus 459 LqR~L~~s~~l~EsLa~ENsaLt~~yNqQ-~~~v-------------------~qLk~~mE~Lq~Ei~aQ~~~le~l~aE 518 (796)
|..+...-..-++.+|..+..+.+.+..+ ...+ ..+...+++++.++..+...++..+..
T Consensus 77 l~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~k~~~~~~ke~K~~~~~~~k~~k~~~~~~~~l~KaKk~ 156 (337)
T 2x3v_A 77 LERAWGAMMTEADKVSELHQEVKNSLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKA 156 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSCSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666677777777776666432 1222 334445677888888888888988988
Q ss_pred HHHHHHhhhHHHHHHHHH-------HHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHH
Q 003779 519 YANVRLECNAADERAKIL-------ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA 591 (796)
Q Consensus 519 rDaAq~E~naA~ERaK~L-------AaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIda 591 (796)
|+.+-.+...|..+.... ..++.-++.++.+++..--++..+-.........++..|.. .+...++.
T Consensus 157 Y~~~c~e~e~a~~~~~~~~~~~~~s~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~------~~~~~~~~ 230 (337)
T 2x3v_A 157 YHLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTTPQYME------GMEQVFEQ 230 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHhHHhccccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH------HHHHHHHH
Confidence 888888877765443322 24455555554444444444444333333333333333321 24455566
Q ss_pred HH
Q 003779 592 LQ 593 (796)
Q Consensus 592 LQ 593 (796)
||
T Consensus 231 ~Q 232 (337)
T 2x3v_A 231 CQ 232 (337)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 21
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=94.49 E-value=0.66 Score=42.30 Aligned_cols=18 Identities=44% Similarity=0.582 Sum_probs=7.5
Q ss_pred HhhhhHHHhhhhHHHHHH
Q 003779 553 NELKLERQLENSQSEISS 570 (796)
Q Consensus 553 ~eLKleKElE~l~~Er~S 570 (796)
..+-++.+++.|++|+.-
T Consensus 84 ~r~dLE~~iesL~eEl~F 101 (119)
T 3ol1_A 84 ARLDLERKVESLQEEIAF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444333
No 22
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=94.39 E-value=1.4 Score=45.00 Aligned_cols=130 Identities=15% Similarity=0.163 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh-HHH-------------------HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 003779 458 ALQRSLEASRALSESLAAENSSLTDSYNQQR-SVV-------------------NQLKSEMEKLQEEIKVQLVELESFRN 517 (796)
Q Consensus 458 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~-~~v-------------------~qLk~~mE~Lq~Ei~aQ~~~le~l~a 517 (796)
.|..+...-..-++.+|..+..+.+..+.+- ..+ ..+...+++++.++..+...++..+.
T Consensus 85 tl~~aw~~l~~e~e~~a~~H~~la~~L~~~v~~~l~~~~~e~~~k~~~~~~ke~K~~~~~~~k~~k~~~~~~~~l~KaKk 164 (350)
T 3aco_A 85 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKK 164 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTSCBCTTSSBHHHHHHHHHHHHHTSHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666667777777766665432 111 34555666677777777778888888
Q ss_pred HHHHHHHhhhHHHHHHHH-------HHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHH
Q 003779 518 EYANVRLECNAADERAKI-------LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE 590 (796)
Q Consensus 518 ErDaAq~E~naA~ERaK~-------LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stId 590 (796)
.|+.+-.+...|..+... .+.|+.-++.++.+++..--++..+-.....+...++..|. ..+...++
T Consensus 165 ~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~------~~~~~~~~ 238 (350)
T 3aco_A 165 AHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYM------ENMEQVFE 238 (350)
T ss_dssp THHHHHHHHHHHHHHHTTSSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 888877777766654311 14666777777776666666665555554444444444443 23566667
Q ss_pred HHH
Q 003779 591 ALQ 593 (796)
Q Consensus 591 aLQ 593 (796)
.||
T Consensus 239 ~~Q 241 (350)
T 3aco_A 239 QCQ 241 (350)
T ss_dssp HHH
T ss_pred HHH
Confidence 666
No 23
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=94.30 E-value=0.54 Score=45.44 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=70.6
Q ss_pred HHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779 473 LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 552 (796)
Q Consensus 473 La~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS 552 (796)
+...|....+.-+.....+.+|+.++.+|+.+++...-.++.+..|+.+.+++++.+.++.+.|..|=..|=+|.++-+.
T Consensus 59 ~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~ 138 (152)
T 3a7p_A 59 IVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTE 138 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566677778888889999999999999999999999999999999999999999999999999999999886544
Q ss_pred H
Q 003779 553 N 553 (796)
Q Consensus 553 ~ 553 (796)
.
T Consensus 139 q 139 (152)
T 3a7p_A 139 K 139 (152)
T ss_dssp H
T ss_pred H
Confidence 3
No 24
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=94.06 E-value=7.1 Score=41.24 Aligned_cols=47 Identities=4% Similarity=0.094 Sum_probs=37.4
Q ss_pred cccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhH
Q 003779 675 AVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNN 722 (796)
Q Consensus 675 ~~~Ip~DQlR~IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ 722 (796)
|..+..|.++ .++|...|+.+..+=.++...+....+.+..|+....
T Consensus 294 ~~~~~~~e~~-~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~ 340 (406)
T 4dyl_A 294 PGELQLNELT-VESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELR 340 (406)
T ss_dssp TTCCCCSTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666655 7899999999999999999998888888888776654
No 25
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=93.93 E-value=0.4 Score=45.00 Aligned_cols=83 Identities=18% Similarity=0.181 Sum_probs=57.9
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHH
Q 003779 515 FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 594 (796)
Q Consensus 515 l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQE 594 (796)
+-.++-+....+|-|+|-.+ +..+...|+.++.. ..+++..|++|+-++.-++..+.++-..++..++.||+
T Consensus 53 l~~~r~aVLaALNiadEl~k-~~~~~~~L~~~l~~-------~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~ 124 (138)
T 3hnw_A 53 MSAELRTDMMYLNIADDYFK-AKKMADSLSLDIEN-------KDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQK 124 (138)
T ss_dssp SCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566655443 33444555544443 37777788888888888888888888888899999999
Q ss_pred HHHHHHHHHHh
Q 003779 595 EKKMMQSKLRK 605 (796)
Q Consensus 595 EKklLqSKLR~ 605 (796)
++.-|++.|..
T Consensus 125 ~~~~le~~~~~ 135 (138)
T 3hnw_A 125 NIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988763
No 26
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=93.81 E-value=0.46 Score=41.83 Aligned_cols=66 Identities=17% Similarity=0.258 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 003779 542 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 607 (796)
Q Consensus 542 ~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~as 607 (796)
.||.||.++=-.=--++-+++.|+.+-..+..+...+...|..+...++.|++|...-+.|||.+.
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666655333333455666677777777778888888888999999999999999999999754
No 27
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=93.39 E-value=6.4 Score=38.52 Aligned_cols=77 Identities=13% Similarity=0.141 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-hHHH-----------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q 003779 458 ALQRSLEASRALSESLAAENSSLTDSYNQQ-RSVV-----------NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE 525 (796)
Q Consensus 458 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ-~~~v-----------~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E 525 (796)
.+.++...-..-++.+|..+..+.+.++.+ ...+ ...+..+++++.++..+...++..+..|+.+-.+
T Consensus 66 t~~~~w~~~l~~~e~~a~~h~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e 145 (301)
T 2efk_A 66 SQQQSFVQILQEVNDFAGQRELVAENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCRE 145 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555566666666666666322 3333 3444555666666666666777777777777666
Q ss_pred hhHHHHHHH
Q 003779 526 CNAADERAK 534 (796)
Q Consensus 526 ~naA~ERaK 534 (796)
...|.....
T Consensus 146 ~e~a~~~~~ 154 (301)
T 2efk_A 146 AEKAAQTAE 154 (301)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655543
No 28
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=93.04 E-value=0.75 Score=40.63 Aligned_cols=71 Identities=14% Similarity=0.252 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 003779 531 ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 603 (796)
Q Consensus 531 ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKL 603 (796)
++.+.|.++--.||.++..++...- .+.-.-+..++..+++++..+..|+..+...|+.|+++...+..||
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~~~--~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQGK--SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3444444444455555555543321 2222347788999999999999999999999999999999988875
No 29
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=92.56 E-value=5.3 Score=38.62 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003779 467 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 503 (796)
Q Consensus 467 ~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~ 503 (796)
...++.+|..+..+.+..|+-...+..+..++++.+.
T Consensus 79 ~~~~e~~a~~h~~~a~~l~~~~~~l~~~~~~~~~~rK 115 (276)
T 2v0o_A 79 KTSTEKLANCHLDLVRKLQELIKEVQKYGEEQVKSHK 115 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777776555555555555554433
No 30
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=92.36 E-value=3.5 Score=36.56 Aligned_cols=75 Identities=20% Similarity=0.273 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 003779 514 SFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 593 (796)
Q Consensus 514 ~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ 593 (796)
.++.|-..+..++.+...--..|..|+..|+.++.+|.-.+-+ +-.+.+.+..++-..+.||++|..-++-.|
T Consensus 15 ~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~-------~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~ 87 (96)
T 3q8t_A 15 ELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQ-------YQREYSEFKRQQLELDDELKSVENQMRYAQ 87 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444556666666666655444433 333344445555555555555444444444
Q ss_pred HH
Q 003779 594 EE 595 (796)
Q Consensus 594 EE 595 (796)
-.
T Consensus 88 ~q 89 (96)
T 3q8t_A 88 MQ 89 (96)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 31
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.35 E-value=3.6 Score=43.38 Aligned_cols=55 Identities=18% Similarity=0.135 Sum_probs=41.2
Q ss_pred ccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 003779 430 QHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYN 485 (796)
Q Consensus 430 ~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yN 485 (796)
...|+++... ++..+++....+.++|..|...+.+.++.-+....+......++.
T Consensus 344 L~gyC~s~~~-~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e 398 (487)
T 3oja_A 344 LKEQYRTVID-QVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE 398 (487)
T ss_dssp HHHHTCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHhcChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhh
Confidence 4456665544 788888888889999999988888888777777776666655555
No 32
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=91.89 E-value=11 Score=37.48 Aligned_cols=63 Identities=14% Similarity=0.203 Sum_probs=21.8
Q ss_pred HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCCCcccccccccccccccccc
Q 003779 569 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITD 636 (796)
Q Consensus 569 ~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTsTdDLai~d 636 (796)
+.+.++.+.+..=-.++.+-++..=|...+|++=|.. |..--.+...++-++.-...+|.|..
T Consensus 119 DdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E-----Ke~l~~~~QRLkdE~rDLk~El~v~~ 181 (189)
T 2v71_A 119 DDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE-----KESLLVSVQRLKDEARDLRQELAVRE 181 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHCCC------------------
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444555666666666666666666652 11011223334445555555555533
No 33
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=91.82 E-value=3.2 Score=37.65 Aligned_cols=89 Identities=22% Similarity=0.247 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHH
Q 003779 490 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 569 (796)
Q Consensus 490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~ 569 (796)
..+.|+.++.+|+.++..--.++..+..++...+..+..|..+.+.+..||..|-.-+..
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFe-------------------- 65 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD-------------------- 65 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 345556666666665555555555566666666666666666666666666666554441
Q ss_pred HHHHHHHhHHHhhhhHHHHHHHHHHHHHH
Q 003779 570 SYKKKISSLEKERQDFQSTIEALQEEKKM 598 (796)
Q Consensus 570 S~~~q~ssi~kER~~l~stIdaLQEEKkl 598 (796)
.+.+-|....++|..+..-++.|+++++-
T Consensus 66 EAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 66 EANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22333444456666677777777776653
No 34
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=91.61 E-value=1.2 Score=41.86 Aligned_cols=63 Identities=17% Similarity=0.212 Sum_probs=24.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 003779 482 DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLE 544 (796)
Q Consensus 482 ~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LE 544 (796)
+.|-........|..+++.+..|+..---.|..+..+.+.+..+..+..++...|..+++.||
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444443333333333333333333333333333333333333333
No 35
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=91.59 E-value=11 Score=36.82 Aligned_cols=46 Identities=17% Similarity=0.099 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Q 003779 490 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 535 (796)
Q Consensus 490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~ 535 (796)
....++..+.+++.++..+...++..+..|+.+-.++..|......
T Consensus 117 ~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~~~~ 162 (305)
T 2efl_A 117 ERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEK 162 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666777777777777777777777777766665443
No 36
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=91.09 E-value=1.6 Score=37.26 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 003779 565 QSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 605 (796)
Q Consensus 565 ~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~ 605 (796)
-.|+.++.++++ .+...+|+.++....++.+|..
T Consensus 40 E~ev~~L~kKiq-------~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 40 EDELVALQKKLK-------GTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666 3445666666777777777764
No 37
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=90.35 E-value=0.2 Score=55.70 Aligned_cols=76 Identities=18% Similarity=0.160 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 529 ADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 529 A~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 604 (796)
|.+-+..|+.+...+|+...+|+....+..++-+.|..++..+..++..+..++..=-.+-..||+|...++..++
T Consensus 375 ~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~ 450 (575)
T 2i1j_A 375 LQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQD 450 (575)
T ss_dssp -------------------------------------------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555555555445544555555555555555544444444444455555555555444
No 38
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=90.26 E-value=5.2 Score=35.50 Aligned_cols=91 Identities=21% Similarity=0.217 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHH
Q 003779 489 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI 568 (796)
Q Consensus 489 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er 568 (796)
..+.+|+.++..|+.+=..-+..|..+-.|++..-.++.+...-++.|-.+=...-. ..=....++-.+..|+
T Consensus 4 ~~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~-------eyn~~~~ql~e~~dE~ 76 (96)
T 3q8t_A 4 SDSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQR-------EYSEFKRQQLELDDEL 76 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 345667777777777666666666666666666555555444444444333332222 2333345555677777
Q ss_pred HHHHHHHHhHHHhhhhHHHHHHHHH
Q 003779 569 SSYKKKISSLEKERQDFQSTIEALQ 593 (796)
Q Consensus 569 ~S~~~q~ssi~kER~~l~stIdaLQ 593 (796)
+|+..+|. ..+.-+++|+
T Consensus 77 ~Sl~~q~~-------~~~~qLdkL~ 94 (96)
T 3q8t_A 77 KSVENQMR-------YAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHH-------HHHHHHHHhh
Confidence 77777776 3344555554
No 39
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.76 E-value=15 Score=35.50 Aligned_cols=86 Identities=15% Similarity=0.178 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHH
Q 003779 513 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 592 (796)
Q Consensus 513 e~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaL 592 (796)
..+..++...+..+.+|-.+.+.+..||..|-.-++.-= -+=+...+-++..++.+..-+.+.=.+....|+.|
T Consensus 61 ~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEA------N~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~l 134 (154)
T 2ocy_A 61 KRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEA------NNMVADARKEKYAIEILNKRLTEQLREKDTLLDTL 134 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555555556666655554443210 01111122222233333333333333444566666
Q ss_pred HHHHHHHHHHHH
Q 003779 593 QEEKKMMQSKLR 604 (796)
Q Consensus 593 QEEKklLqSKLR 604 (796)
|+++..|..-+-
T Consensus 135 q~ql~~LK~v~~ 146 (154)
T 2ocy_A 135 TLQLKNLKKVMH 146 (154)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHHHH
Confidence 666666654433
No 40
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=89.66 E-value=15 Score=35.38 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=12.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 003779 520 ANVRLECNAADERAKILASEVIGLEEKAL 548 (796)
Q Consensus 520 DaAq~E~naA~ERaK~LAaEVV~LEEk~l 548 (796)
..|-..+..|--....|..++..||+++.
T Consensus 87 KEAE~RAE~AERsv~kLEk~id~lEd~L~ 115 (155)
T 2efr_A 87 KEAETRAEFAERSVTKLEKSIDDLEDELY 115 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444
No 41
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=89.55 E-value=1 Score=41.79 Aligned_cols=61 Identities=25% Similarity=0.224 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHH
Q 003779 497 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSE 567 (796)
Q Consensus 497 ~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~E 567 (796)
.+++|+.||......++.|+.|...+.. .|-..|..||.++..-|..--++.-|.+.|+.|
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~----------ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e 76 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVL----------QLKGHVSELEADLAEQQHLRQQAADDCEFLRAE 76 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666655555556667666544322 233445555555554443333333333334433
No 42
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=89.35 E-value=1.6 Score=38.62 Aligned_cols=57 Identities=26% Similarity=0.348 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHH---HhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779 496 SEMEKLQEEIKVQLV---ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 552 (796)
Q Consensus 496 ~~mE~Lq~Ei~aQ~~---~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS 552 (796)
..-..|+.||++..+ +|..+++.--+++-++.+|..|++.|..||..|++++..||+
T Consensus 14 eLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334456778887765 456668888888999999999999999999999999988764
No 43
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=89.29 E-value=5.5 Score=36.89 Aligned_cols=85 Identities=18% Similarity=0.203 Sum_probs=58.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 003779 517 NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 596 (796)
Q Consensus 517 aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK 596 (796)
.|++.....++.|.+-...-+.++..|.+++.+++-.. -+++=|+..++-|+.-..+=-.+|..++.+++.|++++
T Consensus 24 ~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l----E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql 99 (110)
T 2v4h_A 24 MQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM----ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQL 99 (110)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHH
Confidence 35666666667777777777777777777776632111 12334666666666666666677888999999999999
Q ss_pred HHHHHHHHh
Q 003779 597 KMMQSKLRK 605 (796)
Q Consensus 597 klLqSKLR~ 605 (796)
..||..+.+
T Consensus 100 ~~Lq~q~~~ 108 (110)
T 2v4h_A 100 EQLQREFNK 108 (110)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999887653
No 44
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=88.77 E-value=2.8 Score=42.68 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh-HHH-------------------HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 003779 458 ALQRSLEASRALSESLAAENSSLTDSYNQQR-SVV-------------------NQLKSEMEKLQEEIKVQLVELESFRN 517 (796)
Q Consensus 458 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~-~~v-------------------~qLk~~mE~Lq~Ei~aQ~~~le~l~a 517 (796)
.|..++..-..-++.+|..+..+.+++..+- ..+ ..+...+++++..+..+...|+..+.
T Consensus 76 sl~~aw~~i~~e~e~~a~~H~~~a~~l~~~v~~~l~~~~k~~~~k~~~~~~ke~K~~~~~~~k~qk~~~~~~~~l~kaKk 155 (320)
T 3m3w_A 76 TLEKAWHAFFTAAERLSELHLEVREKLHGPDSERVRTWQRGAFHRPVLGGFRASRAAEDGFRKAQKPWLKRLKEVEASKK 155 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555556666666666666554421 111 22223444555555555555665565
Q ss_pred HHHHHHHh
Q 003779 518 EYANVRLE 525 (796)
Q Consensus 518 ErDaAq~E 525 (796)
.|+.+-.+
T Consensus 156 ~Y~~~c~e 163 (320)
T 3m3w_A 156 SYHTARKD 163 (320)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554444
No 45
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=88.51 E-value=6 Score=36.59 Aligned_cols=101 Identities=12% Similarity=0.180 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHH
Q 003779 488 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSE 567 (796)
Q Consensus 488 ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~E 567 (796)
...++.|+....+|+.++... ++|++-..-..+ +....-..+|-.|.+++..-=+.-..+++....+
T Consensus 5 ~~~~~~lq~~~~ql~~qL~k~-------~~~r~~Le~~w~---~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~--- 71 (112)
T 1x79_B 5 RDQVKKLQLMLRQANDQLEKT-------MKDKQELEDFIK---QSSEDSSHQISALVLRAQASEILLEELQQGLSQA--- 71 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 456677777776666653332 222222222223 2333456788888887775433333333333333
Q ss_pred HHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 003779 568 ISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS 601 (796)
Q Consensus 568 r~S~~~q~ssi~kER~~l~stIdaLQEEKklLqS 601 (796)
.+.+..++.-|+.+|..|...|.+||.|-.-|.-
T Consensus 72 q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~G 105 (112)
T 1x79_B 72 KRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQG 105 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 3667778888999999999999999988765543
No 46
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=88.47 E-value=7 Score=34.44 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003779 466 SRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 504 (796)
Q Consensus 466 s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 504 (796)
+.+-++++-.+.-.+-++..+-...|..|+..+..|+.+
T Consensus 21 a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~e 59 (101)
T 3u59_A 21 AIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDE 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444455544444444
No 47
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.88 E-value=18 Score=38.14 Aligned_cols=24 Identities=21% Similarity=0.255 Sum_probs=11.0
Q ss_pred eeEeecCCCCCCCCCccccccccC
Q 003779 41 RVRVTDLDGAGTSDGPDKAVVSLP 64 (796)
Q Consensus 41 ~vr~~d~dgag~sdg~~~~v~~~~ 64 (796)
.++..|..|-++.+-+..++..+|
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~ 58 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFT 58 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCT
T ss_pred CccEEEeeCCcCCCCCHHHHhCCC
Confidence 345555555555443333344433
No 48
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=86.65 E-value=12 Score=36.82 Aligned_cols=134 Identities=14% Similarity=0.187 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-hHHH------------------HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 003779 457 FALQRSLEASRALSESLAAENSSLTDSYNQQ-RSVV------------------NQLKSEMEKLQEEIKVQLVELESFRN 517 (796)
Q Consensus 457 faLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ-~~~v------------------~qLk~~mE~Lq~Ei~aQ~~~le~l~a 517 (796)
..|..+...-..-++.+|..+..+.+.+..+ ...+ ..+...+++++..+..+...++..+.
T Consensus 63 gs~~~aw~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~e~~~k~~~~~kerK~~~~~~~k~~k~~~~~~~~l~kaKk 142 (290)
T 3i2w_A 63 GTTEAAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLMQIKERKDLEDLFKKAQKPWAKLLAKVEKAKA 142 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCEETTEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556555566667777777776666332 1222 34445566777777888888888888
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhh----HHHHHHHHH
Q 003779 518 EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD----FQSTIEALQ 593 (796)
Q Consensus 518 ErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~----l~stIdaLQ 593 (796)
.|+.+-.+...|..+..........-..++.+++...-|+...++..+ ..|...+..+.+.|.+ +-..++.||
T Consensus 143 ~Y~~~c~e~~~a~~~~~~a~~~~~~s~k~~~K~~~k~~k~~~~~~~a~---~~Y~~~v~~~n~~~~~~~~~~p~~~~~~Q 219 (290)
T 3i2w_A 143 DYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQKCR---EKYEQAIAEITKYNSVYIEDMTSVFEKCQ 219 (290)
T ss_dssp HHHHHHHTTTSCC--------------------CTTSSTTTTHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 888877776666544332111111112333334333333333333333 4444444444444443 334556666
No 49
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=86.35 E-value=19 Score=32.72 Aligned_cols=85 Identities=19% Similarity=0.226 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003779 440 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 519 (796)
Q Consensus 440 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 519 (796)
..++.|.+.|++++.||-.|+-.+...+..++.+-. +|-. |+. ....+..++
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~-------KyE~-----------------E~~----~r~~~E~di 71 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE-------KLQE-----------------EML----QREEAENTL 71 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH-----------------HHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHH-----------------HHH----HHHHHHHHH
Confidence 357789999999999999999888888877776543 2221 110 112223445
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779 520 ANVRLECNAADERAKILASEVIGLEEKALRLRS 552 (796)
Q Consensus 520 DaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS 552 (796)
...+....+|+-.--.|..+|..|.+++.=||.
T Consensus 72 ~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 72 QSFRQDVDNASLARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555655556688888888888876543
No 50
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=85.67 E-value=6.1 Score=34.40 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=13.4
Q ss_pred HhhhhHHHHHHHHHHHHHHH
Q 003779 580 KERQDFQSTIEALQEEKKMM 599 (796)
Q Consensus 580 kER~~l~stIdaLQEEKklL 599 (796)
--|-+|..-|+.|++|..-|
T Consensus 63 l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 63 LARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556777777888877554
No 51
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=84.94 E-value=23 Score=32.37 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779 525 ECNAADERAKILASEVIGLEEKALRLRS 552 (796)
Q Consensus 525 E~naA~ERaK~LAaEVV~LEEk~lqLRS 552 (796)
-|.+|.+|...|.+.-+.||.++..+-+
T Consensus 63 ~l~e~EE~~~~L~~~k~eLe~~l~el~~ 90 (129)
T 2fxo_A 63 NLADAEERCDQLIKNKIQLEAKVKEMNK 90 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888888888888888887743
No 52
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=83.90 E-value=23 Score=31.46 Aligned_cols=62 Identities=13% Similarity=0.102 Sum_probs=31.6
Q ss_pred HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHH
Q 003779 468 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAA 529 (796)
Q Consensus 468 ~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA 529 (796)
+=++.|-.|.+...+++.+--..+.++....+++++||.+-.-.+..+..|+|.++..+..|
T Consensus 9 kKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 9 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555554444444445555444444433
No 53
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=83.57 E-value=26 Score=31.80 Aligned_cols=97 Identities=16% Similarity=0.194 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--hhH--HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 003779 448 HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ--QRS--VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 523 (796)
Q Consensus 448 hIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNq--Q~~--~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq 523 (796)
||+=| ++.-...+-|..++...+.+..+-..|.+++.+ +.. ...+-...|+.|++||.....+|..|+..++...
T Consensus 3 Hi~LL-RK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~ 81 (107)
T 2no2_A 3 HADLL-RKNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSA 81 (107)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45433 234445555666666666666666666666655 111 1222334455566666666666666777777766
Q ss_pred HhhhHHHHHHHHHHHHHHHHHH
Q 003779 524 LECNAADERAKILASEVIGLEE 545 (796)
Q Consensus 524 ~E~naA~ERaK~LAaEVV~LEE 545 (796)
++--.-..+...|.+|...|+.
T Consensus 82 ~~~~~l~~~~~~l~~Ek~~L~~ 103 (107)
T 2no2_A 82 QSEANWAAEFAELEKERDSLVS 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666666666554
No 54
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=83.16 E-value=16 Score=31.12 Aligned_cols=77 Identities=22% Similarity=0.343 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHH
Q 003779 492 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY 571 (796)
Q Consensus 492 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~ 571 (796)
..++..|-.|+.+ .+......+.+...+..+..++..+-.||..|..++..+ +-+++.+...+..+
T Consensus 2 ~~ikkKm~~lk~e-------~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~l-------E~eld~~ee~l~~a 67 (81)
T 1ic2_A 2 DAIKKKMQMLKLD-------KENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGT-------EDELDKYSESLKDA 67 (81)
T ss_dssp CHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 4577777666654 344445555555566666666666667777776666654 66666777666666
Q ss_pred HHHHHhHHHhh
Q 003779 572 KKKISSLEKER 582 (796)
Q Consensus 572 ~~q~ssi~kER 582 (796)
..++....+-+
T Consensus 68 ~~kLeeaek~~ 78 (81)
T 1ic2_A 68 QEKLELADKKA 78 (81)
T ss_dssp HHHHHHHGGGC
T ss_pred HHHHHHHHHHh
Confidence 66666554443
No 55
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.35 E-value=23 Score=32.23 Aligned_cols=63 Identities=16% Similarity=0.232 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779 487 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 552 (796)
Q Consensus 487 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS 552 (796)
-...+.+|++.+..|+-||..+..-.+++..-..-+...+..+ .+.++.-+..||+++.++|.
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~---l~~~q~~i~~lE~eL~~~r~ 96 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELA---LKDARNKLAELEEALQKAKQ 96 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHH
Confidence 3455667777777777776666555555543333333333222 22333444455555554443
No 56
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=82.31 E-value=20 Score=40.09 Aligned_cols=98 Identities=17% Similarity=0.336 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHH
Q 003779 494 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKK 573 (796)
Q Consensus 494 Lk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~ 573 (796)
-+.++..+|.|++.=..+.+..+++|+.+..+..+..++ +.+|-+.+..+.-..+ -+-+.+|+++..++..|++
T Consensus 7 yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~---i~aeNeaikkrNa~ak---a~Ye~~l~kY~~dlakY~~ 80 (497)
T 3iox_A 7 YQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAA---LTAENTAIKKRNADAK---ADYEAKLAKYQADLAKYQK 80 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 344555555555555556666666666666555543333 4445544444443331 1223344455555544444
Q ss_pred HHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 574 KISSLEKERQDFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 574 q~ssi~kER~~l~stIdaLQEEKklLqSKLR 604 (796)
++- +-+..+.+-|+|++.-+..|-
T Consensus 81 ~~A-------eY~~kl~aYe~~~~~~~k~la 104 (497)
T 3iox_A 81 DLA-------DYPVKLKAYEDEQTSIKAALA 104 (497)
T ss_dssp HHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 422 333445555555554444444
No 57
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=81.96 E-value=4.5 Score=45.08 Aligned_cols=99 Identities=16% Similarity=0.178 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHH
Q 003779 493 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYK 572 (796)
Q Consensus 493 qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~ 572 (796)
+++.++|+-+.|+.. .|..+.+|...|+.++..+.+.+..|+.+.-.+|++...|-...-.++.+.++|..+.....
T Consensus 328 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~ 404 (575)
T 2i1j_A 328 AARERAEKKQQEYQD---RLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEA 404 (575)
T ss_dssp CHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHC----------------------------------------
T ss_pred HHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 445555555555443 34566778888888888888888888888888888888776666666666666555444444
Q ss_pred HHHHhHHHhhhhHHHHHHHHHH
Q 003779 573 KKISSLEKERQDFQSTIEALQE 594 (796)
Q Consensus 573 ~q~ssi~kER~~l~stIdaLQE 594 (796)
.+-..++.+.......+.+|.+
T Consensus 405 ~e~~~l~~~~~~~~~~~~~~~~ 426 (575)
T 2i1j_A 405 AERQKLEDEIRAKQEEVSRIQQ 426 (575)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444445555443
No 58
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=81.89 E-value=60 Score=34.92 Aligned_cols=13 Identities=15% Similarity=0.294 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHHH
Q 003779 440 EDFAALEQHIEDL 452 (796)
Q Consensus 440 ~~faaLqqhIeDL 452 (796)
..|..|-+|+++-
T Consensus 22 ~G~~~L~~r~~~g 34 (486)
T 3haj_A 22 GNYKRTVKRIDDG 34 (486)
T ss_dssp TTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 6788888777653
No 59
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=81.54 E-value=2 Score=39.10 Aligned_cols=75 Identities=23% Similarity=0.318 Sum_probs=55.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 003779 482 DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES--FRNEYANVR-----LECNAADERAKILASEVIGLEEKALRLRSNE 554 (796)
Q Consensus 482 ~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~--l~aErDaAq-----~E~naA~ERaK~LAaEVV~LEEk~lqLRS~e 554 (796)
+.||.-+..|..|..+.++|+++++...+.|+. ++.+|+... .--|=|.+--+....+|..|+.+|-+||.--
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999888888877 567776632 2233344444445688888888888887544
Q ss_pred hh
Q 003779 555 LK 556 (796)
Q Consensus 555 LK 556 (796)
-+
T Consensus 92 ~~ 93 (100)
T 1go4_E 92 RA 93 (100)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 60
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=81.44 E-value=43 Score=32.89 Aligned_cols=41 Identities=22% Similarity=0.415 Sum_probs=28.5
Q ss_pred HhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHH
Q 003779 560 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQ 600 (796)
Q Consensus 560 ElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLq 600 (796)
.+..|..|+++.+..++.+..|+..++.-|..|.-|+..+.
T Consensus 98 ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 98 RITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34446777777777777777777777777777777776666
No 61
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.80 E-value=42 Score=32.44 Aligned_cols=117 Identities=18% Similarity=0.258 Sum_probs=73.7
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 003779 477 NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES---FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSN 553 (796)
Q Consensus 477 NsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~---l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~ 553 (796)
|..|..-||.|.. |.+.+-+++.++..+...+.. ++.+++. +..+.+..-.|+..|.+++.+.|..
T Consensus 5 StKLI~Ain~qs~----LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~-------l~~~~~~~~~e~~~L~~~l~~E~~~ 73 (154)
T 2ocy_A 5 STQLIESVDKQSH----LEEQLNKSLKTIASQKAAIENYNQLKEDYNT-------LKRELSDRDDEVKRLREDIAKENEL 73 (154)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH-------HHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 3456666776653 455555555555544444333 3444443 3344556777777777777777777
Q ss_pred hhhhHHHhhhhHHHHHHH--------HHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 554 ELKLERQLENSQSEISSY--------KKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 554 eLKleKElE~l~~Er~S~--------~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 604 (796)
...++++...+..|++-+ .+-|....++|..+..-++.|++..+....+|.
T Consensus 74 R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~ 132 (154)
T 2ocy_A 74 RTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLD 132 (154)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776666666666543 444566778888899888889887766666555
No 62
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.37 E-value=27 Score=31.75 Aligned_cols=100 Identities=15% Similarity=0.259 Sum_probs=46.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHH
Q 003779 480 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 559 (796)
Q Consensus 480 Lt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleK 559 (796)
|.......+..+..-|.++-.|++.|+.-..++++++.-.++....+.++..| ...++..+..++.. ++.
T Consensus 20 l~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~---~~~~l~~~q~~i~~-------lE~ 89 (129)
T 3tnu_B 20 LQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQR---GELALKDARNKLAE-------LEE 89 (129)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-------HHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-------HHH
Confidence 33344455556666677777777776666666666655554433333333322 23444444444443 356
Q ss_pred HhhhhHHHHHHHHHHHHhHHHhhhhHHHHH
Q 003779 560 QLENSQSEISSYKKKISSLEKERQDFQSTI 589 (796)
Q Consensus 560 ElE~l~~Er~S~~~q~ssi~kER~~l~stI 589 (796)
++..++.++.+.-++|+.++--.-.|--+|
T Consensus 90 eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EI 119 (129)
T 3tnu_B 90 ALQKAKQDMARLLREYQELMNTKLALDVEI 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665554444443333
No 63
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.13 E-value=22 Score=32.47 Aligned_cols=63 Identities=21% Similarity=0.263 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779 487 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 552 (796)
Q Consensus 487 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS 552 (796)
-...+.+|+..+..|+-||+.+..-.+++..-..-+...+..+. +.++.-+..||.++.++|.
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l---~~~q~~i~~lE~eL~~~r~ 98 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQL---AQIQEMIGSVEEQLAQLRC 98 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 34456666677777776666655555444333333333222222 2333344445555554443
No 64
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=80.02 E-value=11 Score=33.67 Aligned_cols=50 Identities=24% Similarity=0.243 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 003779 528 AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 578 (796)
Q Consensus 528 aA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi 578 (796)
|+.=|.|.+ .+...||.+...|..+--++.+|+..+..|++.|+.+|+.+
T Consensus 39 Aq~CR~Kr~-~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 39 AQSCRYKRV-QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456688888 57789999999888888888888888888888888888754
No 65
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=78.67 E-value=12 Score=32.88 Aligned_cols=51 Identities=10% Similarity=0.163 Sum_probs=29.8
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhH
Q 003779 515 FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ 565 (796)
Q Consensus 515 l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~ 565 (796)
+.+|++.+.+...++-.|++.|...|-.||.++..-|..+-.++.++..+.
T Consensus 4 l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~ 54 (79)
T 3cvf_A 4 MAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA 54 (79)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666777777777777777776666666666666555555555
No 66
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=78.24 E-value=28 Score=32.32 Aligned_cols=15 Identities=13% Similarity=0.122 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 003779 531 ERAKILASEVIGLEE 545 (796)
Q Consensus 531 ERaK~LAaEVV~LEE 545 (796)
|+...|.++|.--.+
T Consensus 62 E~I~vLkaQv~IY~~ 76 (110)
T 2v4h_A 62 ETVPVLKAQADIYKA 76 (110)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444433333
No 67
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=77.65 E-value=49 Score=36.14 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 444 ALEQHIEDLTQEKFALQRSLEASRALSE 471 (796)
Q Consensus 444 aLqqhIeDLT~EKfaLqR~L~~s~~l~E 471 (796)
-|..-|++|+.+.+.|+|...-..-.+-
T Consensus 64 ~~~~rIe~L~~~L~~~s~s~~~~~~y~~ 91 (390)
T 1deq_A 64 DFTSRINKLRDSLFNYQKNSKDSNTLTK 91 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3567788888888888777655544433
No 68
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=77.19 E-value=26 Score=32.08 Aligned_cols=96 Identities=18% Similarity=0.215 Sum_probs=40.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhh
Q 003779 484 YNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN 563 (796)
Q Consensus 484 yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~ 563 (796)
....+..+...|.++-.|++.|+.-..++++++.-.++....+.++..| ...++..++.++.. ++.++..
T Consensus 26 ~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~---~~~~l~~~q~~i~~-------lE~eL~~ 95 (131)
T 3tnu_A 26 VATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGR---YCMQLAQIQEMIGS-------VEEQLAQ 95 (131)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-------HHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-------HHHHHHH
Confidence 3444555566666666666666555555555555444433333333222 23344444444432 3556666
Q ss_pred hHHHHHHHHHHHHhHHHhhhhHHHHH
Q 003779 564 SQSEISSYKKKISSLEKERQDFQSTI 589 (796)
Q Consensus 564 l~~Er~S~~~q~ssi~kER~~l~stI 589 (796)
++.++.+.-++|+.++--.-.|--+|
T Consensus 96 ~r~em~~ql~EYq~Ll~vKl~Ld~EI 121 (131)
T 3tnu_A 96 LRCEMEQQNQEYKILLDVKTRLEQEI 121 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665554444443333
No 69
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=76.85 E-value=12 Score=34.06 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 003779 582 RQDFQSTIEALQEEKKMMQSKLRKASGSG 610 (796)
Q Consensus 582 R~~l~stIdaLQEEKklLqSKLR~asa~g 610 (796)
+++...++++||.|.+-|..++|.+..+|
T Consensus 70 ~~~~~~~~e~Lq~E~erLr~~v~~lEeg~ 98 (100)
T 1go4_E 70 RQRLREDHSQLQAECERLRGLLRAMERGG 98 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 44567899999999999999999877644
No 70
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=75.85 E-value=43 Score=29.79 Aligned_cols=38 Identities=11% Similarity=0.183 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Q 003779 497 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 534 (796)
Q Consensus 497 ~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK 534 (796)
=+..|...|..|...+..+..+.+.++....+|.-+-|
T Consensus 75 fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k 112 (150)
T 3ajw_A 75 FIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQ 112 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433333
No 71
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=75.55 E-value=8.7 Score=38.60 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh----hccCCCc
Q 003779 584 DFQSTIEALQEEKKMMQSKLRK----ASGSGKS 612 (796)
Q Consensus 584 ~l~stIdaLQEEKklLqSKLR~----asa~gKa 612 (796)
.++..++.++.+++.++..|.+ ++-.|.+
T Consensus 133 ~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V 165 (369)
T 4dk0_A 133 VVQENIKQAEIEVNTAETNLGYTKITSPIDGTV 165 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEE
Confidence 3444555566666666655542 4444444
No 72
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.22 E-value=50 Score=30.20 Aligned_cols=100 Identities=20% Similarity=0.260 Sum_probs=59.4
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHhhHHHHHHHHHH----HHHHH-----
Q 003779 435 STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE--NSSLTDSYNQQRSVVNQLKSEM----EKLQE----- 503 (796)
Q Consensus 435 s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~E--NsaLt~~yNqQ~~~v~qLk~~m----E~Lq~----- 503 (796)
|+.++.||..|-+-|. .-=|.+-..+..=+.++.+|.+- +..|.++.......+++|=.+. .+|..
T Consensus 5 ~~~d~~ef~~l~~~is---~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~ 81 (130)
T 2dnx_A 5 SSGQLRDFSSIIQTCS---GNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPL 81 (130)
T ss_dssp CSCCSCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCChhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4556788877665554 34455556666666677777653 5566666666665555554433 33332
Q ss_pred ---HHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHH
Q 003779 504 ---EIKVQLVELESFRNEYANVRLECNAADERAKILA 537 (796)
Q Consensus 504 ---Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LA 537 (796)
+=+.|....+-|..||-++..++..+..++..-.
T Consensus 82 ~~~~~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aeke 118 (130)
T 2dnx_A 82 STSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKE 118 (130)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123556667777777777777777666554443
No 73
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=74.07 E-value=13 Score=35.50 Aligned_cols=77 Identities=16% Similarity=0.118 Sum_probs=28.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHH
Q 003779 519 YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKM 598 (796)
Q Consensus 519 rDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKkl 598 (796)
+...+.-+.+|-.+.+.+..|+..|-.-+..- +-+=+...+-++..++.+..-+...-.+-...|+.||+.+..
T Consensus 55 l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeE------AN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~ 128 (135)
T 2e7s_A 55 IAKENELRTKAEEEADKLNKEVEDLTASLFDE------ANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKN 128 (135)
T ss_dssp HHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHH------HHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344555555566666666665544421 011112223333333444443433334444556666666655
Q ss_pred HHH
Q 003779 599 MQS 601 (796)
Q Consensus 599 LqS 601 (796)
|..
T Consensus 129 LK~ 131 (135)
T 2e7s_A 129 LKK 131 (135)
T ss_dssp ---
T ss_pred HHH
Confidence 543
No 74
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=73.67 E-value=13 Score=32.37 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHH
Q 003779 688 NINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLE 736 (796)
Q Consensus 688 SInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLE 736 (796)
-+-.-+..|..|+..|...|+++...|..|...+.+|..+|..++.|||
T Consensus 39 ele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 39 ELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555566667677666999999999999999999999999999986
No 75
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=73.59 E-value=6 Score=37.63 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHH--------HHHHHhHHHhhhhH
Q 003779 514 SFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY--------KKKISSLEKERQDF 585 (796)
Q Consensus 514 ~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~--------~~q~ssi~kER~~l 585 (796)
.++.+++.+..++ +.+-.|+..|.+++.+.|.....++++..++..|++.+ .+-+....++|..+
T Consensus 29 ~l~~~l~~l~~~l-------~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~ 101 (135)
T 2e7s_A 29 QLKEDYNTLKREL-------SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAI 101 (135)
T ss_dssp HHHHHHHHHHHHT-------TTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555444 45556666667777666666666666666666665543 34455566777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 003779 586 QSTIEALQEEKKMMQS 601 (796)
Q Consensus 586 ~stIdaLQEEKklLqS 601 (796)
..-++.|++..+-...
T Consensus 102 e~r~~~L~~ql~e~e~ 117 (135)
T 2e7s_A 102 EILNKRLTEQLREKDM 117 (135)
T ss_dssp HHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777765544433
No 76
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=72.93 E-value=49 Score=37.38 Aligned_cols=16 Identities=13% Similarity=0.106 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 003779 589 IEALQEEKKMMQSKLR 604 (796)
Q Consensus 589 IdaLQEEKklLqSKLR 604 (796)
+.+-||+++.+|..+-
T Consensus 397 ~~~~~~dv~~~~a~~d 412 (551)
T 2b5u_A 397 AQRAQTDVNNKQAAFD 412 (551)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHH
Confidence 3344455555544443
No 77
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=72.25 E-value=15 Score=36.83 Aligned_cols=29 Identities=10% Similarity=0.173 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 003779 516 RNEYANVRLECNAADERAKILASEVIGLE 544 (796)
Q Consensus 516 ~aErDaAq~E~naA~ERaK~LAaEVV~LE 544 (796)
..|++.++..+..|..+.+.+.+++..++
T Consensus 114 ~~~~~~a~~~~~~a~a~~~~~~~~l~~~~ 142 (369)
T 4dk0_A 114 LDTLNTAKATLNNAKAEMDVVQENIKQAE 142 (369)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544444444443333
No 78
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=71.83 E-value=48 Score=31.22 Aligned_cols=71 Identities=21% Similarity=0.266 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003779 451 DLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 521 (796)
Q Consensus 451 DLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDa 521 (796)
.||+-.-.|.++-.++---.+++.+=+.+|...--+.-..|.+|+.+++.|.++++-..++++.++.+...
T Consensus 33 qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~ 103 (121)
T 3mq7_A 33 ELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQV 103 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Confidence 68888888888887777777777766777766555545578888888888888888888888887776553
No 79
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=71.25 E-value=95 Score=32.52 Aligned_cols=36 Identities=6% Similarity=0.097 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 003779 444 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSS 479 (796)
Q Consensus 444 aLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsa 479 (796)
.+...|+.+-.-+....-+|+..++-++.+-.++-+
T Consensus 356 ~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~ 391 (471)
T 3mq9_A 356 AVRTAVINAASGRQTVDEALKDAQTRITAARDGLRA 391 (471)
T ss_dssp HHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 444455544444444555555555555555555433
No 80
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=71.00 E-value=11 Score=37.57 Aligned_cols=8 Identities=63% Similarity=0.966 Sum_probs=0.0
Q ss_pred CcccchHH
Q 003779 765 ADEGDEVV 772 (796)
Q Consensus 765 ~degdevv 772 (796)
..+||.||
T Consensus 324 L~~Gd~VV 331 (341)
T 3fpp_A 324 LEAGDEVV 331 (341)
T ss_dssp --------
T ss_pred CCCCCEEE
Confidence 45566655
No 81
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=70.97 E-value=66 Score=30.28 Aligned_cols=77 Identities=16% Similarity=0.310 Sum_probs=51.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHH
Q 003779 518 EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 597 (796)
Q Consensus 518 ErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKk 597 (796)
+...||..+..+..++-.--.=|+.|.+-+....+.. ++.+++|..||..+..+++ +..-.|++|.-+..
T Consensus 33 qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~Lq-------~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 33 ELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQ-------DASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhch
Confidence 4444555555556666666666777777666666665 4567778888888888877 33456777777777
Q ss_pred HHHHHHH
Q 003779 598 MMQSKLR 604 (796)
Q Consensus 598 lLqSKLR 604 (796)
.+..++-
T Consensus 103 ~~~~r~~ 109 (121)
T 3mq7_A 103 VLSVRIA 109 (121)
T ss_dssp HHHHHHC
T ss_pred hhhhHhh
Confidence 7777765
No 82
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=69.94 E-value=81 Score=30.35 Aligned_cols=11 Identities=27% Similarity=0.519 Sum_probs=6.9
Q ss_pred hhhHHHHHHHH
Q 003779 439 NEDFAALEQHI 449 (796)
Q Consensus 439 ~~~faaLqqhI 449 (796)
++.|..|.+++
T Consensus 17 ~~g~~~l~~~~ 27 (276)
T 2v0o_A 17 NSGFDVLYHNM 27 (276)
T ss_dssp CCHHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 56666666554
No 83
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=69.88 E-value=17 Score=35.34 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 003779 531 ERAKILASEVIGLEEKALRLRS 552 (796)
Q Consensus 531 ERaK~LAaEVV~LEEk~lqLRS 552 (796)
+.++.|+.|+..|..++...|.
T Consensus 113 akI~aL~~Ei~~Lr~qL~~~R~ 134 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLDEQRV 134 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888899888888776654
No 84
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=69.30 E-value=46 Score=37.78 Aligned_cols=71 Identities=18% Similarity=0.291 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHH---HH-HHHHHHHHHHHHHHHHHHHhhhhH
Q 003779 446 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSV---VN-QLKSEMEKLQEEIKVQLVELESFR 516 (796)
Q Consensus 446 qqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~---v~-qLk~~mE~Lq~Ei~aQ~~~le~l~ 516 (796)
-+-|++|..+-+.|++.-.-+...+..+-++-..=..+-|+-... +. +|++.++.|+++|+.|+.-+..|+
T Consensus 63 tkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQ 137 (562)
T 3ghg_A 63 TNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQ 137 (562)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888887766666555555544331111111122222 22 556666666666666665444443
No 85
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=68.92 E-value=24 Score=31.11 Aligned_cols=69 Identities=22% Similarity=0.293 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003779 440 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 515 (796)
Q Consensus 440 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l 515 (796)
+=|..|++-|+.+-. .+.|+ +--.+.|-.+|..|....++-.+....|..+.++|++|..+-..-+.++
T Consensus 6 ElleqLE~KIq~avd-tI~lL------qmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 6 EVFEKLEAKVQQAID-TITLL------QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHH-HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHH------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557777777776543 33332 2345667777777777777777777888888888888876655555444
No 86
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=68.69 E-value=8.5 Score=41.48 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCc
Q 003779 538 SEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKS 612 (796)
Q Consensus 538 aEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa 612 (796)
.|.+.|++++.++|-..-+++++.+.+..|+..+..++... +.+++.|+..+..+..+=|+
T Consensus 3 ~~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~--------------~~~rr~l~n~~~~l~gnIrV 63 (412)
T 3u06_A 3 SMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQS--------------NMERKELHNTVMDLRDNIRV 63 (412)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHTCSEEE
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhCCCEEE
Confidence 46677777777777666666777777777766666655433 34555556666544443343
No 87
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=68.68 E-value=26 Score=30.67 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=44.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 003779 524 LECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 593 (796)
Q Consensus 524 ~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ 593 (796)
.+|..+..|.+.+..+--.||++|..+ +.+|+..++++++.+.++..++.-=+.=+-.+.-|+
T Consensus 6 ~e~e~~~~klq~~E~rN~~Le~~v~~l-------e~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elR 68 (79)
T 3cvf_A 6 AEREETQQKVQDLETRNAELEHQLRAM-------ERSLEEARAERERARAEVGRAAQLLDVSLFELSELR 68 (79)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 468889999999999999999999865 788888888888888888866543333333333333
No 88
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=67.86 E-value=10 Score=40.62 Aligned_cols=49 Identities=18% Similarity=0.314 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhH
Q 003779 537 ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDF 585 (796)
Q Consensus 537 AaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l 585 (796)
++++..|++++..++..--+++++++.+..++..+..++..-+..|..|
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l 50 (403)
T 4etp_A 2 ASKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTL 50 (403)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777766666666676677766666666655444444443
No 89
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=67.12 E-value=80 Score=35.49 Aligned_cols=32 Identities=19% Similarity=0.432 Sum_probs=17.5
Q ss_pred hHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHH
Q 003779 557 LERQLENSQSEISSYKKKISSLEKERQDFQST 588 (796)
Q Consensus 557 leKElE~l~~Er~S~~~q~ssi~kER~~l~st 588 (796)
-+++|+.++.+.-.|.+++..-+.++..+.+.
T Consensus 71 Y~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~ 102 (497)
T 3iox_A 71 YQADLAKYQKDLADYPVKLKAYEDEQTSIKAA 102 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666554444444443
No 90
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=66.07 E-value=72 Score=28.33 Aligned_cols=118 Identities=8% Similarity=0.016 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHhhhHHHHHHHH
Q 003779 457 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF-RNEYANVRLECNAADERAKI 535 (796)
Q Consensus 457 faLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l-~aErDaAq~E~naA~ERaK~ 535 (796)
|.|+.-|.-.....+..+.+--.....++.....+.+|......+.+.+..... ..+ ..++-+.+.=+..-+.....
T Consensus 8 ~~L~~ll~l~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~~~--~g~~~~~l~~~~~fi~~L~~~I~~ 85 (150)
T 3ajw_A 8 GALETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMG--NGIASNRWINYQQFIQTLEKAIEQ 85 (150)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CC--SGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444445555555555554444443322110 111 34445555555555555556
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 003779 536 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 576 (796)
Q Consensus 536 LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~s 576 (796)
...+|..++.++.+.|..-+.+.++.+.+.-=++....++.
T Consensus 86 q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~er~~~~~~ 126 (150)
T 3ajw_A 86 HRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQDRQTAAAL 126 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777776666666665554433333333333
No 91
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=65.84 E-value=29 Score=31.98 Aligned_cols=44 Identities=11% Similarity=0.190 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHhHHHh----hhhHHHHHHHHHHHHHHHHHHHHhhc
Q 003779 564 SQSEISSYKKKISSLEKE----RQDFQSTIEALQEEKKMMQSKLRKAS 607 (796)
Q Consensus 564 l~~Er~S~~~q~ssi~kE----R~~l~stIdaLQEEKklLqSKLR~as 607 (796)
|.-|+++++.+|....+| =..|+.+|..|+.++..++.+||.+.
T Consensus 15 L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLE 62 (111)
T 2v66_B 15 LKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELE 62 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333 23477888888888888899998543
No 92
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=65.82 E-value=46 Score=28.89 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 515 FRNEYANVRLECNAADERAKILASEVIGLEEKALRL 550 (796)
Q Consensus 515 l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqL 550 (796)
+-.|....+..|.+|.+|...|.+.-+.||.++..+
T Consensus 47 l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 47 LLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444443347888888888888888888887765
No 93
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=65.78 E-value=1.2e+02 Score=31.73 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=14.7
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 003779 579 EKERQDFQSTIEALQEEKKMMQSKLRKAS 607 (796)
Q Consensus 579 ~kER~~l~stIdaLQEEKklLqSKLR~as 607 (796)
+++-.+-++-|+.|.-|.+.|..+|.++.
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 435 DAEKAQGQKKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555555555555555443
No 94
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=65.54 E-value=89 Score=29.18 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=10.9
Q ss_pred HhhhhHHHhhhhHHHHHHHHHHHH
Q 003779 553 NELKLERQLENSQSEISSYKKKIS 576 (796)
Q Consensus 553 ~eLKleKElE~l~~Er~S~~~q~s 576 (796)
.++...++-.=++.+.....++|.
T Consensus 58 ~~i~~~~~~~~yk~~y~~l~k~Y~ 81 (119)
T 3etw_A 58 QRLQAEANTRFYKSQYQELASKYE 81 (119)
T ss_dssp HHHHHHTTSCTTHHHHHHHHHHHH
T ss_pred HHHHHhhccchHHHHHHHHHHHHH
Confidence 333333344445555444444444
No 95
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=64.88 E-value=1.2e+02 Score=30.59 Aligned_cols=25 Identities=8% Similarity=0.149 Sum_probs=15.9
Q ss_pred ccccccchhhHHHHHhhHHHHHHHH
Q 003779 672 EGLAVNIPHDQMRMIHNINALISEL 696 (796)
Q Consensus 672 ~~~~~~Ip~DQlR~IdSInaLisEL 696 (796)
+++|+.||.---..|+..+.|-.++
T Consensus 244 Ps~~~~ip~p~~ea~~~~~~l~~~~ 268 (283)
T 3pe0_A 244 PSVCFLVPPPNQEAQEAVTRLEAQH 268 (283)
T ss_dssp EGGGEECCSCCHHHHHHHHHHHHHH
T ss_pred cceEEeeCCCCHHHHHHHHHHHHHH
Confidence 7777777766666666655554444
No 96
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=64.72 E-value=1.2e+02 Score=33.68 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=24.1
Q ss_pred HHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003779 473 LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 519 (796)
Q Consensus 473 La~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 519 (796)
|-..-..|...-+.....|..|+..++.+|.++......+.....++
T Consensus 105 Le~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~ 151 (464)
T 1m1j_B 105 LKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEM 151 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 33333444444455555566666666666665554444444444333
No 97
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=64.61 E-value=1.7e+02 Score=32.90 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003779 585 FQSTIEALQEEKKMMQSK 602 (796)
Q Consensus 585 l~stIdaLQEEKklLqSK 602 (796)
.+...+.||.|...|+.+
T Consensus 565 ~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 565 FQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 445555566555555554
No 98
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=64.20 E-value=4.9 Score=41.51 Aligned_cols=43 Identities=21% Similarity=0.290 Sum_probs=31.2
Q ss_pred HHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHH
Q 003779 558 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQ 600 (796)
Q Consensus 558 eKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLq 600 (796)
+..+..+..++..+..+..-|..+...+..+|.+|++|.+.|+
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445666777777777777777777788888888888887664
No 99
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=64.02 E-value=23 Score=28.91 Aligned_cols=44 Identities=14% Similarity=0.217 Sum_probs=26.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHH
Q 003779 483 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA 533 (796)
Q Consensus 483 ~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERa 533 (796)
+.++....|.+|..++.+|+.+|.+ ++.+..+|+-|+..|.+|.
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~a-------l~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANA-------ARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhh
Confidence 3445556666666666666665443 4445556666777777664
No 100
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=63.87 E-value=70 Score=34.84 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 003779 527 NAADERAKILASEVIGLEEKALR 549 (796)
Q Consensus 527 naA~ERaK~LAaEVV~LEEk~lq 549 (796)
+.++..++++-.|+..||..++.
T Consensus 80 e~~tq~skkml~~~~~~e~~~~~ 102 (409)
T 1m1j_C 80 EQLTQKSKKIIEEIIRYENTILA 102 (409)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcc
Confidence 45577777777777777765553
No 101
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=63.65 E-value=87 Score=28.44 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=32.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHH
Q 003779 518 EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKK 573 (796)
Q Consensus 518 ErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~ 573 (796)
+|+.++.++..+..+.+.+-.|+..|..++.+.|.....++++...+..|++-+-.
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555566666666666666666666666666666655554443
No 102
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=63.59 E-value=20 Score=31.74 Aligned_cols=41 Identities=24% Similarity=0.251 Sum_probs=25.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHH
Q 003779 520 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQ 560 (796)
Q Consensus 520 DaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKE 560 (796)
.||+....++..+...++.+|..||.+-.+||..-..+++|
T Consensus 25 ~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E 65 (87)
T 1hjb_A 25 IAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRE 65 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777777777777766664443333333
No 103
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=63.57 E-value=40 Score=27.52 Aligned_cols=36 Identities=25% Similarity=0.387 Sum_probs=21.2
Q ss_pred HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 569 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 569 ~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 604 (796)
..+..++..++.+-..|...|..|++|+..|...|.
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555666667777777766665553
No 104
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=63.07 E-value=1.2e+02 Score=29.87 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhh
Q 003779 533 AKILASEVIGLEEKALRLRSNEL 555 (796)
Q Consensus 533 aK~LAaEVV~LEEk~lqLRS~eL 555 (796)
-+.|+..+...|++|..+-.+=+
T Consensus 130 ~~~L~~a~~e~eeeS~~l~~~F~ 152 (192)
T 2p22_C 130 KKKLEQNTKKLDEESSQLETTTR 152 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 56788888888888887744443
No 105
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=63.06 E-value=79 Score=28.67 Aligned_cols=14 Identities=7% Similarity=0.138 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 003779 496 SEMEKLQEEIKVQL 509 (796)
Q Consensus 496 ~~mE~Lq~Ei~aQ~ 509 (796)
+.|+-|++++.++.
T Consensus 40 E~i~vLk~Qv~IY~ 53 (94)
T 3jsv_C 40 ETVPVLKAQADIYK 53 (94)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444555555554
No 106
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=63.05 E-value=1.1e+02 Score=29.59 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=14.5
Q ss_pred hHHHHHHHHHH----------HHHHHHHHHHHHHHH
Q 003779 441 DFAALEQHIED----------LTQEKFALQRSLEAS 466 (796)
Q Consensus 441 ~faaLqqhIeD----------LT~EKfaLqR~L~~s 466 (796)
.|..|.++++. .-+||-++...-+++
T Consensus 15 g~~~l~~r~~~g~~~~~el~~f~~eRa~iE~eYak~ 50 (305)
T 2efl_A 15 QFDNLEKHTQWGIDILEKYIKFVKERTEIELSYAKQ 50 (305)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777776643 234555555544443
No 107
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=62.85 E-value=17 Score=36.30 Aligned_cols=55 Identities=20% Similarity=0.393 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003779 450 EDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 504 (796)
Q Consensus 450 eDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 504 (796)
|-||+=|-+++-.|+.+-.+++.|..||..|++.--..-..+.+|++++.-|+++
T Consensus 2 d~~~~YK~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~ 56 (190)
T 4emc_A 2 DPLTVYKNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQ 56 (190)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4578889999999999999999999999999877655555555555555444443
No 108
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=62.56 E-value=96 Score=33.96 Aligned_cols=116 Identities=15% Similarity=0.199 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhH--------HHHHHHHh-hHHHHHHHHHHHHHHHHHHH
Q 003779 440 EDFAALEQHIEDL---TQEKFALQRSLEASRALSESLAAENSS--------LTDSYNQQ-RSVVNQLKSEMEKLQEEIKV 507 (796)
Q Consensus 440 ~~faaLqqhIeDL---T~EKfaLqR~L~~s~~l~EsLa~ENsa--------Lt~~yNqQ-~~~v~qLk~~mE~Lq~Ei~a 507 (796)
..+..|.+-++++ ..+=+.+.+.+-.--+=.+..+.+|+. |-++++-. .-+-++|. .|..||..|+.
T Consensus 67 ~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~-~ir~Lq~~l~~ 145 (390)
T 1deq_A 67 SRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ-RINLLQKNVRD 145 (390)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHH
Confidence 3455666666665 234444444443333333333334433 33333332 22334455 66677777777
Q ss_pred HHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHHHHHHHHhHhhh
Q 003779 508 QLVELESFRNEYANVRLECNAADERAKILASEV---IGLEEKALRLRSNELK 556 (796)
Q Consensus 508 Q~~~le~l~aErDaAq~E~naA~ERaK~LAaEV---V~LEEk~lqLRS~eLK 556 (796)
|+++...|....|-.+.-|.-+=.|+-.+.-.. +.++++++++++..|-
T Consensus 146 q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL~qv~a~~ll 197 (390)
T 1deq_A 146 QLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQLEQVIAINLL 197 (390)
T ss_pred HHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHHHHhhhhhccc
Confidence 777777776666777777776666554444222 2344445555554443
No 109
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=62.46 E-value=46 Score=30.83 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 003779 441 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 520 (796)
Q Consensus 441 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD 520 (796)
-+..|..-|+.|. ..|.+-...++..+.+|- +.|++|+.+++.-+...+--+.+++.++.|.+
T Consensus 16 ~Ie~Lkreie~lk---~ele~l~~E~q~~v~ql~--------------~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 16 LIERLYREISGLK---AQLENMKTESQRVVLQLK--------------GHVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555543 334444455555554443 33444444444444433333444555555555
Q ss_pred HH
Q 003779 521 NV 522 (796)
Q Consensus 521 aA 522 (796)
..
T Consensus 79 ~l 80 (120)
T 3i00_A 79 EL 80 (120)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 110
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=61.67 E-value=88 Score=30.37 Aligned_cols=57 Identities=21% Similarity=0.209 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 003779 533 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 596 (796)
Q Consensus 533 aK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK 596 (796)
...|..|...|+.+|.++.-.----.|.++.+++|..++.-++..+ ..-+.+||+|=
T Consensus 70 I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~l-------E~kl~kLq~EN 126 (152)
T 3a7p_A 70 LAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVL-------QQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 3444555555555555442111111345566677766666666644 34445555554
No 111
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=61.38 E-value=1.2e+02 Score=29.31 Aligned_cols=83 Identities=19% Similarity=0.257 Sum_probs=61.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003779 436 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 515 (796)
Q Consensus 436 ~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l 515 (796)
-++++.+|-|++-+++|..|=-.-|-.|+- -+.-+.+.+.++.|||.---++.-++..+
T Consensus 7 E~K~~~ia~L~~D~~s~~~eleEnqeEL~i---------------------VgkML~EEqgKVDQlqKRn~~HQKEi~~L 65 (167)
T 4gkw_A 7 EDKEDEVADLKQDTESLQKQLEENQEELEI---------------------VGNMLREEQGKVDQLQKRNVAHQKEIGKL 65 (167)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHhhHHHHHHhccHHHHHHHHH
Confidence 367788999999998877665444444332 13345566777777777777888889999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Q 003779 516 RNEYANVRLECNAADERAKILASE 539 (796)
Q Consensus 516 ~aErDaAq~E~naA~ERaK~LAaE 539 (796)
++|...+|.-+.+|+-..|.-..+
T Consensus 66 rae~~~~QRn~~K~~~~Lkrn~~q 89 (167)
T 4gkw_A 66 RAELGTAQRNLEKADQLLKRNSQQ 89 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHhhhHH
Confidence 999999999999998877765443
No 112
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=61.21 E-value=1.7e+02 Score=31.07 Aligned_cols=36 Identities=25% Similarity=0.305 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHH
Q 003779 691 ALISELALEKEELVQALSSELAQSSKLKDLNNELSR 726 (796)
Q Consensus 691 aLisELa~EReravsaLa~esr~~~dLk~lN~ELsR 726 (796)
..|..|..||+.+....+...-.+.++.++...+++
T Consensus 224 ~rle~L~~ere~~~e~~a~~afd~qk~qRl~q~~~~ 259 (302)
T 3ibp_A 224 SRIESLHAEREVLSERFATLSFDVQKTQRLHQAFSR 259 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 478889999999997777777688888888888887
No 113
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=60.93 E-value=67 Score=31.32 Aligned_cols=60 Identities=18% Similarity=0.073 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH-------HHHHHHHHHHHHHHHH
Q 003779 491 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK-------ILASEVIGLEEKALRL 550 (796)
Q Consensus 491 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK-------~LAaEVV~LEEk~lqL 550 (796)
|.+|+..+..++.-|.+|....+.+..||..|.-|..+|++=.+ .-.+=+.-||+|+.++
T Consensus 22 l~qL~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~a 88 (158)
T 3tul_A 22 LSQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQA 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999888888877555 3445566788887765
No 114
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=60.34 E-value=1.1e+02 Score=34.78 Aligned_cols=7 Identities=14% Similarity=0.344 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 003779 444 ALEQHIE 450 (796)
Q Consensus 444 aLqqhIe 450 (796)
.||-.|+
T Consensus 50 rLQglLd 56 (562)
T 3ghg_A 50 RMKGLID 56 (562)
T ss_dssp HHHHHHH
T ss_pred chhhhHH
Confidence 3444443
No 115
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=59.96 E-value=2e+02 Score=31.95 Aligned_cols=27 Identities=4% Similarity=0.117 Sum_probs=11.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003779 480 LTDSYNQQRSVVNQLKSEMEKLQEEIK 506 (796)
Q Consensus 480 Lt~~yNqQ~~~v~qLk~~mE~Lq~Ei~ 506 (796)
|...|++...++..+...|.++..+|+
T Consensus 126 Iq~slk~~Q~Qi~en~n~~~~~~~~~e 152 (464)
T 1m1j_B 126 IDNKLVKTQKQRKDNDIILSEYNTEME 152 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHH
Confidence 444444444444444433433333333
No 116
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=59.41 E-value=26 Score=28.56 Aligned_cols=29 Identities=10% Similarity=0.208 Sum_probs=13.4
Q ss_pred HHHHHHhhhHHHHHHHHhhHHHHHHHHHH
Q 003779 470 SESLAAENSSLTDSYNQQRSVVNQLKSEM 498 (796)
Q Consensus 470 ~EsLa~ENsaLt~~yNqQ~~~v~qLk~~m 498 (796)
+++|..+-..|+.+..+..+.|+.|+.++
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v 34 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDA 34 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555544444444444444443
No 117
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=59.30 E-value=1.3e+02 Score=29.19 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHH----------HHHHHHHHHHHHHHH
Q 003779 440 EDFAALEQHIED----------LTQEKFALQRSLEAS 466 (796)
Q Consensus 440 ~~faaLqqhIeD----------LT~EKfaLqR~L~~s 466 (796)
+.|..|.+|+++ .-+||-++.+.-++.
T Consensus 7 ~g~~~l~~~~~~g~~~~~el~~f~keRa~iE~eYak~ 43 (301)
T 2efk_A 7 GQFEVLERHTQWGLDLLDRYVKFVKERTEVEQAYAKQ 43 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888877653 234555555544443
No 118
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=59.09 E-value=1.3e+02 Score=28.99 Aligned_cols=99 Identities=19% Similarity=0.288 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHH
Q 003779 492 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY 571 (796)
Q Consensus 492 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~ 571 (796)
......+..|+.++.+-.-.+.+|..=-+.+-+.-..-.++.|.|....-..|.|+-..=...-|+++++..+-+++...
T Consensus 38 e~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~ 117 (155)
T 2efr_A 38 ELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ 117 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455554444444444422111222222445566666666666666666666566677888888888888888
Q ss_pred HHHHHhHHHhhhhHHHHHH
Q 003779 572 KKKISSLEKERQDFQSTIE 590 (796)
Q Consensus 572 ~~q~ssi~kER~~l~stId 590 (796)
+.+|..+..+=++....|.
T Consensus 118 Kek~~~i~~eLd~tl~el~ 136 (155)
T 2efr_A 118 KLKYKAISEEMKQLEDKVE 136 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8887766554444333333
No 119
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=58.60 E-value=23 Score=35.20 Aligned_cols=16 Identities=13% Similarity=0.202 Sum_probs=7.2
Q ss_pred HHHHHHHHHhhhHHHH
Q 003779 516 RNEYANVRLECNAADE 531 (796)
Q Consensus 516 ~aErDaAq~E~naA~E 531 (796)
..+++.++.++..|..
T Consensus 113 ~~~~~~a~~~~~~~~a 128 (341)
T 3fpp_A 113 QQDLDNAATEMAVKQA 128 (341)
T ss_dssp THHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445554444444433
No 120
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=58.60 E-value=2.5e+02 Score=32.00 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=25.1
Q ss_pred hhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 003779 561 LENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 605 (796)
Q Consensus 561 lE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~ 605 (796)
...++.|++.....++.+|--|-+ ++ .++|.+.+||-+
T Consensus 411 ~d~~~~~~s~~~~~ls~~me~Rkq--~e-----~k~k~ae~kl~~ 448 (551)
T 2b5u_A 411 FDAAAKEKSDADAALSSAMESRKK--KE-----DKKRSAENNLND 448 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HH-----HHHHHHHHHHHH
T ss_pred HHHHhhcccchhhhhhhhhhcccc--hh-----hhhhhhhhccch
Confidence 344667777788888888776633 22 445667888875
No 121
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=57.22 E-value=27 Score=30.23 Aligned_cols=44 Identities=25% Similarity=0.269 Sum_probs=27.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhh
Q 003779 520 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN 563 (796)
Q Consensus 520 DaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~ 563 (796)
.||+....++..+...++..|..|+.+-.+||..-..+++|+..
T Consensus 25 ~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~ 68 (78)
T 1gu4_A 25 IAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELST 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777777777777777665444444444333
No 122
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=55.81 E-value=22 Score=32.49 Aligned_cols=40 Identities=25% Similarity=0.256 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHH
Q 003779 698 LEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLEL 737 (796)
Q Consensus 698 ~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLEL 737 (796)
.||..++.........+..|+....+|.++|+.++..+.-
T Consensus 4 ~e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e 43 (125)
T 1joc_A 4 DERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQE 43 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999988776653
No 123
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=55.53 E-value=1.2e+02 Score=27.44 Aligned_cols=16 Identities=13% Similarity=0.474 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHHHH
Q 003779 584 DFQSTIEALQEEKKMM 599 (796)
Q Consensus 584 ~l~stIdaLQEEKklL 599 (796)
.+-+.++.++.||..|
T Consensus 86 ~l~~~~~~l~~Ek~~L 101 (107)
T 2no2_A 86 NWAAEFAELEKERDSL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444445555555544
No 124
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=54.83 E-value=12 Score=38.61 Aligned_cols=31 Identities=35% Similarity=0.577 Sum_probs=13.3
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHH
Q 003779 471 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKL 501 (796)
Q Consensus 471 EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~L 501 (796)
++|...|..|++..++...++..||+++++|
T Consensus 64 ~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 64 DSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444444444333
No 125
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=54.69 E-value=29 Score=28.16 Aligned_cols=35 Identities=34% Similarity=0.500 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHH
Q 003779 467 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL 501 (796)
Q Consensus 467 ~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~L 501 (796)
++-+.+|+.-|..|+.-..+-+.++..|+++|++|
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44457888889999888888888888888888776
No 126
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=53.88 E-value=1.4e+02 Score=27.75 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHhhhHH
Q 003779 451 DLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL-ESFRNEYANVRLECNAA 529 (796)
Q Consensus 451 DLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l-e~l~aErDaAq~E~naA 529 (796)
.|+.|.-.|...+.........+..+|..|...|-........|+..+..++.+. ..+ +.-..|+.+....+.++
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~~~----~~l~ek~~~e~~~le~~L~e~ 101 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDY----DLAKESTSWDRQRLEKELEEK 101 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555556666667776666665555555555544444332 111 22233333333333333
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHhHhhhhHHHhhhh
Q 003779 530 DERAK----ILASEVIGLEEKALRLRSNELKLERQLENS 564 (796)
Q Consensus 530 ~ERaK----~LAaEVV~LEEk~lqLRS~eLKleKElE~l 564 (796)
.+... ..-.+++.++.+-..+-...+.++++++..
T Consensus 102 ~e~~~~~l~~~~e~~~~~~~~~~e~~~~~~~~ek~ls~A 140 (155)
T 2oto_A 102 KEALELAIDQASRDYHRATALEKELEEKKKALELAIDQA 140 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33221 111122244444444555555555555553
No 127
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=52.39 E-value=3e+02 Score=31.10 Aligned_cols=15 Identities=7% Similarity=0.315 Sum_probs=11.1
Q ss_pred chhhHHHHHHHHHHH
Q 003779 438 HNEDFAALEQHIEDL 452 (796)
Q Consensus 438 ~~~~faaLqqhIeDL 452 (796)
...+|..|.++|.+.
T Consensus 308 ~~~Gi~~L~~~L~~~ 322 (695)
T 2j69_A 308 DGTGFPKFMDSLNTF 322 (695)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHH
Confidence 456788888888764
No 128
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=52.29 E-value=80 Score=24.90 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003779 459 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 505 (796)
Q Consensus 459 LqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei 505 (796)
|++-+....+....+-.+-+.+..+||+....++...++|..++.+|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444344444444555556666666666666666666665544
No 129
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=52.26 E-value=44 Score=38.78 Aligned_cols=29 Identities=17% Similarity=0.397 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 440 EDFAALEQHIEDLTQEKFALQRSLEASRA 468 (796)
Q Consensus 440 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~ 468 (796)
+|.-.+.+||+++.+||..|-+.|+..+.
T Consensus 10 ~dl~~i~~~i~~~~~~r~~l~~~~~~~~~ 38 (706)
T 3fhn_A 10 DDLLNINDRIKQVQNERNELASKLQNLKQ 38 (706)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46667899999999999999999988875
No 130
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=51.54 E-value=1.3e+02 Score=27.20 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=12.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHh
Q 003779 580 KERQDFQSTIEALQEEKKMMQSKLRK 605 (796)
Q Consensus 580 kER~~l~stIdaLQEEKklLqSKLR~ 605 (796)
.+|..++...+.|++....|+..+.+
T Consensus 61 adREkl~~eKe~L~~ql~~lq~q~~~ 86 (94)
T 3jsv_C 61 HAREKLVEKKEYLQEQLEQLQREFNK 86 (94)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHTTC-
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555554443
No 131
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=51.02 E-value=42 Score=29.76 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 003779 533 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 576 (796)
Q Consensus 533 aK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~s 576 (796)
+..|-.||-.|--++..+=+..+--+|.|..-++|+.++.+++.
T Consensus 21 ~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe 64 (81)
T 3qh9_A 21 AEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVA 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34666777666666666655556555665555555555555554
No 132
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=50.93 E-value=1.2e+02 Score=33.67 Aligned_cols=8 Identities=38% Similarity=0.339 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 003779 772 VERVLGWI 779 (796)
Q Consensus 772 vervlgwi 779 (796)
|+|+++-|
T Consensus 440 v~R~l~al 447 (501)
T 1wle_A 440 VPRLLIAL 447 (501)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 133
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=50.73 E-value=70 Score=27.62 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=24.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhH
Q 003779 523 RLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ 565 (796)
Q Consensus 523 q~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~ 565 (796)
.+.+.++-.|++.|...|-.||.++-.-|+.+-.++.++..+.
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~ 48 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLL 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666665555555555555554444
No 134
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=50.64 E-value=1.2e+02 Score=26.82 Aligned_cols=45 Identities=27% Similarity=0.429 Sum_probs=25.5
Q ss_pred HHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 003779 559 RQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 603 (796)
Q Consensus 559 KElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKL 603 (796)
++.|++..|+.-++-+++-++.||.+-..-+.+..+|...||-.|
T Consensus 19 ~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qL 63 (81)
T 3qh9_A 19 RKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQV 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 444555555555566666666666555555555555555555444
No 135
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=50.27 E-value=2e+02 Score=28.37 Aligned_cols=120 Identities=13% Similarity=0.210 Sum_probs=70.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------H
Q 003779 439 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV-------E 511 (796)
Q Consensus 439 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~-------~ 511 (796)
.+.=|.|++.|.-=+- ..|+.|++|+..++.+-+.=++++-+..+.+..++..++-|.+-+..+-- .
T Consensus 32 eekSa~L~eLirs~~P------eDL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d 105 (186)
T 1oxz_A 32 EEKSKMLARLLKSSHP------EDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSS 105 (186)
T ss_dssp TTHHHHHHHHHSCCSH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTT
T ss_pred HHHHHHHHHHhcCCCh------hhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccc
Confidence 3334566655532222 23688999999999887777888888888888888888777665443211 1
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHH
Q 003779 512 LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE 579 (796)
Q Consensus 512 le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~ 579 (796)
.+.+. -.-..|..++-+...|+.|...=|+ ++ -++=.+.+++.++..+|..+.
T Consensus 106 ~Ell~----eL~~~Ck~~qp~i~~Li~e~~ddee-~L----------~elL~~ND~Ln~vl~kY~~~~ 158 (186)
T 1oxz_A 106 EDLMK----ELYQRCERMRPTLFRLASDTEDNDE-AL----------AEILQANDNLTQVINLYKQLV 158 (186)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHCCSCHH-HH----------HHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHccCCHH-HH----------HHHHHhhHHHHHHHHHHHHHh
Confidence 12221 2233466677777777766421111 11 122246777777777777553
No 136
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=50.19 E-value=43 Score=32.96 Aligned_cols=100 Identities=13% Similarity=0.152 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 003779 443 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 522 (796)
Q Consensus 443 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaA 522 (796)
..+++++..+..++-.....|+++++.-+.+..|-+.....+..-.+-.+.-..++++++..++-....+...+.+|..+
T Consensus 117 K~~~~~~~k~~k~~~~~~~~l~kaKk~Y~~~c~e~~~a~~~~~~a~~~~~~s~k~~~K~~~k~~k~~~~~~~a~~~Y~~~ 196 (290)
T 3i2w_A 117 KDLEDLFKKAQKPWAKLLAKVEKAKADYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQKCREKYEQA 196 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC--------------------CTTSSTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666777778888888888888886655554432211111123445555444333344455566777777
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHH
Q 003779 523 RLECNAADERAKILASEVIGLEE 545 (796)
Q Consensus 523 q~E~naA~ERaK~LAaEVV~LEE 545 (796)
...+|....+ ...++..+=+
T Consensus 197 v~~~n~~~~~---~~~~~p~~~~ 216 (290)
T 3i2w_A 197 IAEITKYNSV---YIEDMTSVFE 216 (290)
T ss_dssp HHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHhhHH---HHHHHHHHHH
Confidence 7777666443 3444444433
No 137
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=49.71 E-value=79 Score=25.46 Aligned_cols=50 Identities=24% Similarity=0.318 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003779 456 KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 505 (796)
Q Consensus 456 KfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei 505 (796)
+.+-+|-=++-..-++.|..+...|+....+....|..|+.++.+|.+.+
T Consensus 10 r~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 10 RAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555666677777888877787777777777888888887777653
No 138
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=49.08 E-value=23 Score=28.64 Aligned_cols=30 Identities=20% Similarity=0.137 Sum_probs=19.1
Q ss_pred HhhHHHHHHhHHHHHHHHHHHhHHHHHHHH
Q 003779 712 AQSSKLKDLNNELSRKLEHQTQRLELLTAQ 741 (796)
Q Consensus 712 r~~~dLk~lN~ELsRKLE~qtQRLELltsq 741 (796)
...+.|+.+|.||..|.+.++++++-+.++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777777776666666655554
No 139
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=48.74 E-value=2.1e+02 Score=28.31 Aligned_cols=17 Identities=18% Similarity=0.540 Sum_probs=10.8
Q ss_pred ccccCCchhhHHHHHHHHHH
Q 003779 432 GFYSTKHNEDFAALEQHIED 451 (796)
Q Consensus 432 ~F~s~~~~~~faaLqqhIeD 451 (796)
.|... +.|..|.+|+++
T Consensus 24 ~FW~~---~g~~~l~~r~~~ 40 (312)
T 3abh_A 24 SFWEV---GNYKRTVKRIDD 40 (312)
T ss_dssp CTTST---TTTHHHHHHHHH
T ss_pred cCCCC---CChHHHHHHHHH
Confidence 45544 378888877653
No 140
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=48.14 E-value=46 Score=33.45 Aligned_cols=98 Identities=9% Similarity=0.151 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHH
Q 003779 491 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISS 570 (796)
Q Consensus 491 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S 570 (796)
+..|+.+++.|+.+++...-.+--+.+||+|++.....=.+.++..|.+-+ +..|-.=++.
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~-------------------~~~LLpVlDn 121 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSL-------------------ASDLLPVLDN 121 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH-------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHhHHHHH
Confidence 445666666666665555555555666777766655555555444443321 2223333455
Q ss_pred HHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCc
Q 003779 571 YKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKS 612 (796)
Q Consensus 571 ~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa 612 (796)
+.+.+..+... ..+..|-+-.++...+|.++.....+
T Consensus 122 lerAl~~~~~~-----~~~~~l~eGvemi~k~l~~~L~k~Gv 158 (213)
T 4ani_A 122 FERALKIETDN-----EQAKSILQGMEMVYRSLVDALKKEGV 158 (213)
T ss_dssp HHHHHSCCSCC-----STHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred HHHHHHhcccc-----ccHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 55555433211 12455667777777777775554444
No 141
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=47.92 E-value=71 Score=28.13 Aligned_cols=65 Identities=25% Similarity=0.232 Sum_probs=33.5
Q ss_pred HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 469 LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKA 547 (796)
Q Consensus 469 l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~ 547 (796)
=+|.|-.||..|-..-|+.--+-+.|=..++. +..|++..+.|+.+-..-..++..-+.+||+++
T Consensus 10 evEnLi~EN~eLl~TKNaLnvvk~DLI~rvdE--------------Lt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 10 EVENLILENTQLLETKNALNIVKNDLIAKVDE--------------LTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999998888765555555444443 444444444444444433344444444555544
No 142
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=47.79 E-value=1.2e+02 Score=26.69 Aligned_cols=65 Identities=20% Similarity=0.212 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 003779 535 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 606 (796)
Q Consensus 535 ~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~a 606 (796)
.+-.||..|..+-.+|.-..- .+.--++.+.+++.-+..||.-|+.+++++|+=+..++.|++.+
T Consensus 6 gmgkevEnLi~EN~eLl~TKN-------aLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~el 70 (77)
T 2w83_C 6 FMGREVENLILENTQLLETKN-------ALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNREL 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888777743322 34444577788888888888889999999998888888887754
No 143
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=47.35 E-value=1.1e+02 Score=24.61 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=18.7
Q ss_pred HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 003779 569 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 603 (796)
Q Consensus 569 ~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKL 603 (796)
..+..++..++.+-..|..+|..|++|...|...|
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444455556666666666666555443
No 144
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=46.55 E-value=1.2e+02 Score=27.17 Aligned_cols=83 Identities=16% Similarity=0.180 Sum_probs=57.7
Q ss_pred cccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 003779 431 HGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV 510 (796)
Q Consensus 431 ~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~ 510 (796)
-||-+=-....-..|++.|++|..|----.++-+.-..| -.+-.+|+++-|--. +...+.+....|+.|+.++.-...
T Consensus 6 ~d~s~LPpeqRkkkL~~Ki~el~~ei~ke~~~regl~Km-~~vY~~nP~~GD~~s-~~~~L~e~~~kid~L~~el~K~q~ 83 (98)
T 2ke4_A 6 EDFSHLPPEQQRKRLQQQLEERSRELQKEVDQREALKKM-KDVYEKTPQMGDPAS-LEPQIAETLSNIERLKLEVQKYEA 83 (98)
T ss_dssp SCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH-HHHHHHCGGGCCGGG-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCccCCHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555566777899999999998866666665544444 345678888864433 377888888999999888765555
Q ss_pred Hhhhh
Q 003779 511 ELESF 515 (796)
Q Consensus 511 ~le~l 515 (796)
-|+.+
T Consensus 84 ~L~e~ 88 (98)
T 2ke4_A 84 WLAEA 88 (98)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 145
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=46.50 E-value=1.5e+02 Score=25.79 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 514 SFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 551 (796)
Q Consensus 514 ~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLR 551 (796)
.+-+|+-..+....+|.=---.|.+.|..|.+++.=||
T Consensus 46 ~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 46 EAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444555555666655555443
No 146
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=46.27 E-value=88 Score=27.75 Aligned_cols=43 Identities=19% Similarity=0.413 Sum_probs=22.6
Q ss_pred HHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 003779 543 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM 599 (796)
Q Consensus 543 LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklL 599 (796)
+.+++.+.|+.-+-++++ ++-.++.-++|...|.+|+++.+.|
T Consensus 29 i~EELs~vr~~ni~~esk--------------L~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 29 LSREMEAIRTDNQNFASQ--------------LREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666654443 3333333444555566666665553
No 147
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=46.03 E-value=94 Score=26.62 Aligned_cols=65 Identities=15% Similarity=0.141 Sum_probs=31.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 484 YNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 550 (796)
Q Consensus 484 yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqL 550 (796)
|++|. .+.+|-.+|++|+.+|..-...++.-. =|..-...+.+...+...+..++..++++=..|
T Consensus 18 ykeqr-Ele~le~~Ie~LE~~i~~le~~ladp~-~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 18 YKLQR-ELEQLPQLLEDLEAKLEALQTQVADAS-FFSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554 456677777777766544333332100 011111233445555555666666666655443
No 148
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=45.24 E-value=45 Score=28.69 Aligned_cols=24 Identities=17% Similarity=0.052 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Q 003779 586 QSTIEALQEEKKMMQSKLRKASGS 609 (796)
Q Consensus 586 ~stIdaLQEEKklLqSKLR~asa~ 609 (796)
+..|++||.+.++|..||+.+..+
T Consensus 41 q~~Id~L~~ql~~L~~rl~~~~~~ 64 (78)
T 3efg_A 41 RLTGARNAELIRHLLEDLGKVRST 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 468999999999999999975544
No 149
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=45.15 E-value=23 Score=25.44 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 003779 583 QDFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 583 ~~l~stIdaLQEEKklLqSKLR 604 (796)
+++-++++.|||.++.|..|||
T Consensus 4 delykeledlqerlrklrkklr 25 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 5677889999999998888888
No 150
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=44.64 E-value=93 Score=25.36 Aligned_cols=51 Identities=27% Similarity=0.360 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003779 456 KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 506 (796)
Q Consensus 456 KfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~ 506 (796)
+.|-.|-=++-++.++.|..+...|...-......|.+|+.++.+|...+.
T Consensus 11 R~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 11 KMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566666777777666666666666666777777777666543
No 151
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=44.60 E-value=1.1e+02 Score=29.49 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=7.5
Q ss_pred HHHHHHHHHhhhHHH
Q 003779 516 RNEYANVRLECNAAD 530 (796)
Q Consensus 516 ~aErDaAq~E~naA~ 530 (796)
..|++.++.++..|.
T Consensus 97 ~~~~~~a~~~~~~a~ 111 (277)
T 2f1m_A 97 KQEYDQALADAQQAN 111 (277)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555544443
No 152
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=44.41 E-value=1.2e+02 Score=26.59 Aligned_cols=13 Identities=0% Similarity=0.250 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 003779 489 SVVNQLKSEMEKL 501 (796)
Q Consensus 489 ~~v~qLk~~mE~L 501 (796)
+.+.++.-+|+++
T Consensus 41 GqiE~~~~~l~ql 53 (83)
T 2xdj_A 41 GQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3333333333333
No 153
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=44.33 E-value=43 Score=27.16 Aligned_cols=51 Identities=16% Similarity=0.241 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003779 456 KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 506 (796)
Q Consensus 456 KfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~ 506 (796)
+.|-+|-=++-.+-++.|..+-..|+..-......|..|+.++.+|.+.+.
T Consensus 10 r~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 10 RIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666677777777777777666666777777777776666543
No 154
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=44.22 E-value=2.3e+02 Score=27.33 Aligned_cols=102 Identities=14% Similarity=0.230 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------HhhhhHHHHHHHHHhhhHHHHHHH
Q 003779 462 SLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV-------ELESFRNEYANVRLECNAADERAK 534 (796)
Q Consensus 462 ~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~-------~le~l~aErDaAq~E~naA~ERaK 534 (796)
.|+.|++|...++.+-+.=++++=+....+..++..++-|.+-+...-- ..+.+. -.-..|..++-+..
T Consensus 33 DL~~AN~LiK~m~~~d~~r~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~----eL~~~Ck~~qp~i~ 108 (158)
T 1naf_A 33 DLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMK----ELYQRCERMRPTLF 108 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHH----HHHHHHHTHHHHHH
T ss_pred hHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHH----HHHHHHHHHHHHHH
Confidence 4789999999999988887888888888888888888777765443210 112222 22334667777777
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 003779 535 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 578 (796)
Q Consensus 535 ~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi 578 (796)
.|+.|...=|+ ++ -++=.+.+++.++..+|..+
T Consensus 109 ~Li~e~~ddee-~L----------~elL~~ND~Ln~vl~kY~~~ 141 (158)
T 1naf_A 109 RLASDTEDNDE-AL----------AEILQANDNLTQVINLYKQL 141 (158)
T ss_dssp HHHHHCCSCHH-HH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCHH-HH----------HHHHHhhHHHHHHHHHHHHH
Confidence 77766421111 11 12224566677777777655
No 155
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=44.14 E-value=5.3 Score=36.58 Aligned_cols=50 Identities=24% Similarity=0.275 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 003779 528 AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 578 (796)
Q Consensus 528 aA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi 578 (796)
|+.-|.|+++ ++..||.++..|...--++..|...++.|++.++.+|+.+
T Consensus 49 Aq~CR~rk~~-~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k~e~L 98 (107)
T 3a5t_A 49 AASCRVKRVT-QKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEAL 98 (107)
T ss_dssp HHHHHHHHHH-HHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSCC---
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788877 8999999998887776677777777777777777777655
No 156
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=44.08 E-value=1.5e+02 Score=32.31 Aligned_cols=9 Identities=22% Similarity=0.331 Sum_probs=3.9
Q ss_pred HHHHHHHHh
Q 003779 773 ERVLGWIMK 781 (796)
Q Consensus 773 ervlgwimk 781 (796)
+|+++-|+-
T Consensus 411 ~R~i~allE 419 (455)
T 2dq0_A 411 SRAIVAILE 419 (455)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 157
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=43.65 E-value=2.6e+02 Score=27.86 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=21.7
Q ss_pred HHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003779 470 SESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 503 (796)
Q Consensus 470 ~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~ 503 (796)
+..|-.+|..|+..|.......+.|+.++|++-.
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~ 167 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQGRFEKAVS 167 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888877776666666666555544433
No 158
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=43.21 E-value=2.1e+02 Score=31.74 Aligned_cols=26 Identities=4% Similarity=0.193 Sum_probs=15.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhc
Q 003779 582 RQDFQSTIEALQEEKKMMQSKLRKAS 607 (796)
Q Consensus 582 R~~l~stIdaLQEEKklLqSKLR~as 607 (796)
-..+-..|.+|.++.+.++.+|....
T Consensus 125 ~~~l~~~i~~l~~~~~~~~~~l~~~l 150 (501)
T 1wle_A 125 GREIRKQLTLLYPKEAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666666533
No 159
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=42.72 E-value=2.8e+02 Score=28.06 Aligned_cols=17 Identities=18% Similarity=0.540 Sum_probs=11.1
Q ss_pred ccccCCchhhHHHHHHHHHH
Q 003779 432 GFYSTKHNEDFAALEQHIED 451 (796)
Q Consensus 432 ~F~s~~~~~~faaLqqhIeD 451 (796)
.|... +.|..|.+|++.
T Consensus 24 ~FW~~---~g~~~L~~r~~~ 40 (350)
T 3aco_A 24 SFWEV---GNYKRTVKRIDD 40 (350)
T ss_dssp CTTST---TTTHHHHHHHHH
T ss_pred cCCCC---CCcHHHHHHHHH
Confidence 35554 378888877753
No 160
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=42.31 E-value=47 Score=33.80 Aligned_cols=39 Identities=10% Similarity=0.258 Sum_probs=33.1
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 003779 478 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 516 (796)
Q Consensus 478 saLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~ 516 (796)
.-|+.+||+-...+..|...+++.+.|+..|.+-++..+
T Consensus 167 ~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~ 205 (228)
T 3q0x_A 167 QFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCR 205 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999888888777654
No 161
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=40.35 E-value=1.8e+02 Score=27.11 Aligned_cols=70 Identities=9% Similarity=0.220 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003779 445 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLT-DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES 514 (796)
Q Consensus 445 LqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt-~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~ 514 (796)
|++..+++|.---.|--+-++-++-.+........+- .-|-++.++|+.|+.++.+|++.++.+..+...
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va~~k~ 94 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRIATGKN 94 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5566666666656666666666655555555555443 346778899999999999999987776664443
No 162
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=40.12 E-value=5.6e+02 Score=30.74 Aligned_cols=32 Identities=13% Similarity=0.125 Sum_probs=16.8
Q ss_pred ccCCCccccccCCCccccccccccccCCchhhHHHHHHHHH
Q 003779 410 STSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIE 450 (796)
Q Consensus 410 ~~~n~v~~~~~~~dE~s~e~~~~F~s~~~~~~faaLqqhIe 450 (796)
+..|+.-| ++.|=.++| +-|+.==.+||+-|+
T Consensus 628 F~~N~lvi--tsVDvqsvE-------pvDqrtrd~LqkSVq 659 (861)
T 2zuo_A 628 FPQNGLVV--SSVDVQSVE-------PVDQRTRDALQRSVQ 659 (861)
T ss_dssp CTTTCEEE--EEEEEEEEE-------ESSHHHHHHHHHHHH
T ss_pred EccCCeEE--EEEeeeeec-------ccCHHHHHHHHHHHH
Confidence 44455434 666666664 334444456665554
No 163
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=39.19 E-value=1.9e+02 Score=24.98 Aligned_cols=38 Identities=11% Similarity=0.290 Sum_probs=24.2
Q ss_pred HHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 003779 568 ISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 605 (796)
Q Consensus 568 r~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~ 605 (796)
+..+..++..+..+-..+...+..|..+++.|..+++.
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~~ 103 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIKR 103 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555556666677777777777777663
No 164
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=39.07 E-value=1.9e+02 Score=26.46 Aligned_cols=60 Identities=13% Similarity=0.216 Sum_probs=36.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 003779 517 NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 576 (796)
Q Consensus 517 aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~s 576 (796)
.+...|+..+..+..++..--.=|+.|.+-+..-++...|-++.++++..||..+..++.
T Consensus 25 ~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lq 84 (99)
T 3ni0_A 25 RQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELE 84 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666666666666777666666666666666666666666655555554
No 165
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=38.63 E-value=1.9e+02 Score=24.94 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHH
Q 003779 527 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEK 580 (796)
Q Consensus 527 naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~k 580 (796)
-.+..|.+.+..+--.||+++..+ +.+|+.-+++.+..+.++..++.
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~l-------e~~Le~s~~~q~~~~~Elk~~~e 49 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEM-------EQRLEKSQSEQDAFRSNLKTLLE 49 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888888999888865 77888888888888888775543
No 166
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=38.58 E-value=44 Score=27.00 Aligned_cols=33 Identities=30% Similarity=0.427 Sum_probs=25.1
Q ss_pred HHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 003779 573 KKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 605 (796)
Q Consensus 573 ~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~ 605 (796)
..|..+..|..+|+..++.|+++.+.|.+||.+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566666777888888888888888888864
No 167
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=38.48 E-value=2e+02 Score=25.03 Aligned_cols=14 Identities=7% Similarity=0.368 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHHH
Q 003779 441 DFAALEQHIEDLTQ 454 (796)
Q Consensus 441 ~faaLqqhIeDLT~ 454 (796)
++..++.-|+.|..
T Consensus 13 ~v~~I~~~i~~i~~ 26 (127)
T 1ez3_A 13 QVEEIRGFIDKIAE 26 (127)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 168
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=38.25 E-value=69 Score=34.28 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 003779 513 ESFRNEYANVRLECNAADERAKILASEVIGLEEKAL 548 (796)
Q Consensus 513 e~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~l 548 (796)
+.++.|....+.++.+-.+..+.+..|+..|++++.
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 41 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILI 41 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444455555555555555444
No 169
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=38.18 E-value=1.7e+02 Score=32.03 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 527 NAADERAKILASEVIGLEEKALRL 550 (796)
Q Consensus 527 naA~ERaK~LAaEVV~LEEk~lqL 550 (796)
+.+++.+|++-.|+..+|.-+...
T Consensus 80 ~~~~q~Skkml~~~~~~~~~~~~~ 103 (411)
T 3ghg_C 80 DAATLKSRKMLEEIMKYEASILTH 103 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 567888888777777776555543
No 170
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=37.42 E-value=82 Score=30.39 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHh----hccCCCc
Q 003779 588 TIEALQEEKKMMQSKLRK----ASGSGKS 612 (796)
Q Consensus 588 tIdaLQEEKklLqSKLR~----asa~gKa 612 (796)
.+++++.+++.++..|.+ ++-.|.+
T Consensus 113 ~l~~a~a~l~~a~~~l~~~~I~AP~~G~V 141 (277)
T 2f1m_A 113 AVTAAKAAVETARINLAYTKVTSPISGRI 141 (277)
T ss_dssp HHHHHHHHHHHHHHHHHTTEECCSSCEEE
T ss_pred HHHHHHHHHHHHHHHhhcCEEECCCCeEE
Confidence 344555556666666664 4444444
No 171
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=37.38 E-value=82 Score=25.50 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=6.7
Q ss_pred hhHHHHHHHHHHHHHH
Q 003779 583 QDFQSTIEALQEEKKM 598 (796)
Q Consensus 583 ~~l~stIdaLQEEKkl 598 (796)
..|..+|..|++|...
T Consensus 39 ~~L~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 39 SELASTANMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 172
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=37.26 E-value=94 Score=34.53 Aligned_cols=25 Identities=12% Similarity=0.205 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc
Q 003779 584 DFQSTIEALQEEKKMMQSKLRKASG 608 (796)
Q Consensus 584 ~l~stIdaLQEEKklLqSKLR~asa 608 (796)
.|-..|..|.++.+.++.+|.....
T Consensus 82 ~l~~~i~~le~~~~~~~~~~~~~l~ 106 (485)
T 3qne_A 82 KLSNEKKEIIEKEAEADKNLRSKIN 106 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666665333
No 173
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=37.00 E-value=84 Score=28.95 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=7.5
Q ss_pred hhhhHHHHHHHHHHHH
Q 003779 561 LENSQSEISSYKKKIS 576 (796)
Q Consensus 561 lE~l~~Er~S~~~q~s 576 (796)
++.+..||+=|..|++
T Consensus 34 ve~lEkERDFYF~KLR 49 (106)
T 4e61_A 34 VSTLEIEREFYFNKLR 49 (106)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444455554444
No 174
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=36.48 E-value=4.2e+02 Score=28.27 Aligned_cols=52 Identities=15% Similarity=0.268 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHH
Q 003779 540 VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA 591 (796)
Q Consensus 540 VV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIda 591 (796)
...|..++..++-..-+++.+|+....+....++++.++.-|=.+|.++-|.
T Consensus 207 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~ 258 (373)
T 3hhm_B 207 YDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQ 258 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 3445555555555555556666555555555555555554444444443333
No 175
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=35.83 E-value=80 Score=28.43 Aligned_cols=62 Identities=18% Similarity=0.283 Sum_probs=32.5
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHH-----HHHH---HHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 003779 512 LESFRNEYANVRLECNAADERAK-----ILAS---EVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 576 (796)
Q Consensus 512 le~l~aErDaAq~E~naA~ERaK-----~LAa---EVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~s 576 (796)
|++++.||++.-++.+...-+.. ++++ ||......+-+|=..+.|+. +.+-+||.++++++.
T Consensus 16 LD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmK---q~YEeEI~rLr~eLe 85 (92)
T 3vp9_A 16 LDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMK---DAYEEEIKHLKLGLE 85 (92)
T ss_dssp -CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 46778888887777766554442 2333 33333444555544444432 235555555555554
No 176
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=34.86 E-value=1.9e+02 Score=24.68 Aligned_cols=63 Identities=19% Similarity=0.254 Sum_probs=48.6
Q ss_pred ccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH------HhhHHHHHHhHHHHHHHHHHHhHHHHH
Q 003779 676 VNIPHDQMRMIHNINALISELALEKEELVQALSSEL------AQSSKLKDLNNELSRKLEHQTQRLELL 738 (796)
Q Consensus 676 ~~Ip~DQlR~IdSInaLisELa~EReravsaLa~es------r~~~dLk~lN~ELsRKLE~qtQRLELl 738 (796)
.++..-+-|.++.|-..|..|+.+...|-..|++-. ..+.++...-.++..+|+....|-|-|
T Consensus 14 ~KLSykeqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 14 SKLSYKLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777779999999999999999999999998642 345566666666777777777776544
No 177
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=34.50 E-value=1.9e+02 Score=25.45 Aligned_cols=37 Identities=19% Similarity=0.382 Sum_probs=20.5
Q ss_pred HHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHH
Q 003779 558 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 594 (796)
Q Consensus 558 eKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQE 594 (796)
+.+++.++..++.+..+-.-++.|++.|+..++.++.
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455555555555555555666666666666553
No 178
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=34.17 E-value=3.7e+02 Score=26.89 Aligned_cols=17 Identities=18% Similarity=0.540 Sum_probs=11.6
Q ss_pred ccccCCchhhHHHHHHHHHH
Q 003779 432 GFYSTKHNEDFAALEQHIED 451 (796)
Q Consensus 432 ~F~s~~~~~~faaLqqhIeD 451 (796)
.|.+. +.|..|.++++.
T Consensus 15 ~FW~~---~g~~~l~~r~~~ 31 (337)
T 2x3v_A 15 SFWEV---GNYKRTVKRIDD 31 (337)
T ss_dssp CTTST---TTTHHHHHHHHH
T ss_pred CCCCC---CChHHHHHHHHH
Confidence 45554 678888877754
No 179
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=34.10 E-value=2.3e+02 Score=24.39 Aligned_cols=40 Identities=10% Similarity=0.159 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003779 476 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 515 (796)
Q Consensus 476 ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l 515 (796)
+-..+..+|++....+..|...+.+|+.++.-...+++.|
T Consensus 7 e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL 46 (117)
T 2zqm_A 7 QVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEI 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666788888888888888877777766555555444
No 180
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=34.03 E-value=3.1e+02 Score=25.94 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 003779 587 STIEALQEEKKMMQSKLRKA 606 (796)
Q Consensus 587 stIdaLQEEKklLqSKLR~a 606 (796)
..|..|.+|++.+-..|+.+
T Consensus 101 ~k~~eLEeeL~~~~~nlKsL 120 (147)
T 2b9c_A 101 GKCAELEEELKTVTNNLKSL 120 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34445556666666666543
No 181
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=33.99 E-value=1.5e+02 Score=24.34 Aligned_cols=36 Identities=14% Similarity=0.301 Sum_probs=19.5
Q ss_pred HHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 003779 568 ISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 603 (796)
Q Consensus 568 r~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKL 603 (796)
......++..+..+...|...|..|+.|...|..-|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555666666666665554443
No 182
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=33.98 E-value=2.5e+02 Score=31.16 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHhHHHhhhh
Q 003779 566 SEISSYKKKISSLEKERQD 584 (796)
Q Consensus 566 ~Er~S~~~q~ssi~kER~~ 584 (796)
.++..++.++..++.++..
T Consensus 118 ~~i~~le~~~~~~~~~~~~ 136 (484)
T 3lss_A 118 DQVAGLAKEAQQLEEERDK 136 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 183
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=33.78 E-value=1.1e+02 Score=28.10 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003779 585 FQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 585 l~stIdaLQEEKklLqSKLR 604 (796)
+..+++.|..|+----.|||
T Consensus 30 Lk~~ve~lEkERDFYF~KLR 49 (106)
T 4e61_A 30 YKGTVSTLEIEREFYFNKLR 49 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444
No 184
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=33.64 E-value=2e+02 Score=26.49 Aligned_cols=10 Identities=10% Similarity=-0.021 Sum_probs=2.7
Q ss_pred HHhhhhHHHH
Q 003779 510 VELESFRNEY 519 (796)
Q Consensus 510 ~~le~l~aEr 519 (796)
...+.|-.|+
T Consensus 82 ~qRD~LI~E~ 91 (103)
T 4h22_A 82 KQREEMLEPK 91 (103)
T ss_dssp HTTTSCC---
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 185
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=33.25 E-value=85 Score=26.73 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=12.8
Q ss_pred HHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 573 KKISSLEKERQDFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 573 ~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 604 (796)
++++.+..|.+.+...++.|+.|+.---+|||
T Consensus 9 kkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLR 40 (75)
T 3mtu_A 9 KKMQMLKLDKENALDRAEQAEADKDFYFGKLR 40 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33333333344444444444444433333444
No 186
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=32.94 E-value=3.1e+02 Score=25.69 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 003779 536 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 596 (796)
Q Consensus 536 LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK 596 (796)
|.+++.....++.+.+-... -..+-..|-.+-..+.+++..=|++-..++..++++|.+.
T Consensus 49 m~~~i~ek~~~i~~~~~~~~-yK~eY~~L~KkYk~~~~~Ld~eI~~qe~iI~nFe~Iq~~~ 108 (119)
T 2avr_X 49 VYNELSQRAQRLQAEANTRF-YKSQYQELASKYEDALKKLEAEMEQQKAVISDFEKIQALR 108 (119)
T ss_dssp HHHHHHHHHHHHHHHTTSCT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555554321111 1334445555555556666666677777777777777654
No 187
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=32.89 E-value=2.5e+02 Score=24.52 Aligned_cols=24 Identities=25% Similarity=0.312 Sum_probs=11.2
Q ss_pred HHhhhhHHHHHH-HHHHHHhHHHhh
Q 003779 559 RQLENSQSEISS-YKKKISSLEKER 582 (796)
Q Consensus 559 KElE~l~~Er~S-~~~q~ssi~kER 582 (796)
..+..++.++.. +++++..|+.+|
T Consensus 72 ~klr~Yk~dl~~~lk~~lk~l~d~~ 96 (97)
T 3onj_A 72 AKLREWKKTIQSDIKRPLQSLVDSG 96 (97)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 334445555555 555554444433
No 188
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} SCOP: d.203.1.1 PDB: 3or2_C* 2v4j_C* 2xsj_C*
Probab=32.85 E-value=17 Score=32.98 Aligned_cols=15 Identities=47% Similarity=0.864 Sum_probs=12.3
Q ss_pred HHHHHhhcCCCCCCc
Q 003779 776 LGWIMKLFPGGPSRR 790 (796)
Q Consensus 776 lgwimklfpgg~s~r 790 (796)
+.+|++|||+||.|.
T Consensus 77 ~k~Ly~LFP~gPakq 91 (105)
T 3or1_C 77 LKEIYELFPSGPGKG 91 (105)
T ss_dssp HHHHHHHCTTCTTTT
T ss_pred HHHHHHHCCCCHHHH
Confidence 368999999999653
No 189
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=32.74 E-value=2.6e+02 Score=28.13 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhHHHhhhhH
Q 003779 536 LASEVIGLEEKALRLRSNELKLERQLENSQ 565 (796)
Q Consensus 536 LAaEVV~LEEk~lqLRS~eLKleKElE~l~ 565 (796)
|..++..|++++..++..-|++.-|.++++
T Consensus 64 l~~~l~~l~~e~~el~d~~lR~~AEfeN~R 93 (213)
T 4ani_A 64 AKAQIAELEAKLSEMEHRYLRLYADFENFR 93 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555545555555555554
No 190
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=32.26 E-value=1.1e+02 Score=26.00 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=20.3
Q ss_pred HHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 003779 573 KKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 605 (796)
Q Consensus 573 ~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~ 605 (796)
+.+-+-+..=|+|.+....|.+|++++|++|.+
T Consensus 20 ~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~ 52 (63)
T 2w6a_A 20 KALATSEAKVQQLMKVNSSLSDELRKLQREIHK 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHH
Confidence 333333444456666777777777777777764
No 191
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=32.22 E-value=1e+02 Score=33.27 Aligned_cols=36 Identities=11% Similarity=-0.051 Sum_probs=24.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779 517 NEYANVRLECNAADERAKILASEVIGLEEKALRLRS 552 (796)
Q Consensus 517 aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS 552 (796)
.|++....|..+..++.+.|..+...+++++..+..
T Consensus 3 ~~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~ 38 (412)
T 3u06_A 3 SMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKE 38 (412)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777777776666543
No 192
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=32.17 E-value=3.1e+02 Score=25.33 Aligned_cols=13 Identities=23% Similarity=0.491 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHH
Q 003779 492 NQLKSEMEKLQEE 504 (796)
Q Consensus 492 ~qLk~~mE~Lq~E 504 (796)
..|+...++|..|
T Consensus 6 rdL~~~~~~L~~E 18 (111)
T 2v66_B 6 RDLQADNQRLKYE 18 (111)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555554
No 193
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=32.03 E-value=2.2e+02 Score=23.61 Aligned_cols=29 Identities=14% Similarity=0.091 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 003779 490 VVNQLKSEMEKLQEEIKVQLVELESFRNE 518 (796)
Q Consensus 490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aE 518 (796)
.|.++-.+.+.|+.+|.++...++.+...
T Consensus 37 ~v~~~l~~h~~l~~ei~~~~~~v~~v~~~ 65 (118)
T 3uul_A 37 DVKEQFATHETFMMELSAHQSSVGSVLQA 65 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666666666665443
No 194
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=31.97 E-value=2.8e+02 Score=30.18 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Q 003779 584 DFQSTIEALQEEKKMMQSKLRKAS 607 (796)
Q Consensus 584 ~l~stIdaLQEEKklLqSKLR~as 607 (796)
.+-..|.+|.++.+.++.+|....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 80 EIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666533
No 195
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=31.81 E-value=3.1e+02 Score=25.38 Aligned_cols=14 Identities=29% Similarity=0.356 Sum_probs=6.8
Q ss_pred HHHHhhhHHHHHHH
Q 003779 472 SLAAENSSLTDSYN 485 (796)
Q Consensus 472 sLa~ENsaLt~~yN 485 (796)
.|-.||..|...+-
T Consensus 26 ~l~~eN~~Lk~e~e 39 (155)
T 2oto_A 26 RLRHENKDLKARLE 39 (155)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555444443
No 196
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=31.58 E-value=1.9e+02 Score=22.72 Aligned_cols=14 Identities=7% Similarity=0.095 Sum_probs=5.3
Q ss_pred HHHHHHHhhhHHHH
Q 003779 518 EYANVRLECNAADE 531 (796)
Q Consensus 518 ErDaAq~E~naA~E 531 (796)
.++.+...++.+++
T Consensus 34 ~~~~~~~~l~~~~~ 47 (60)
T 3htk_A 34 KINEIFEKLNTIRD 47 (60)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 197
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=31.54 E-value=3.8e+02 Score=28.13 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=19.9
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003779 477 NSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 506 (796)
Q Consensus 477 NsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~ 506 (796)
...|+..++..++.+.+|+.++++++.+|+
T Consensus 164 ~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 164 KELLQSILKNQGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 445555566666667777777777777766
No 198
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=31.22 E-value=3.1e+02 Score=25.08 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003779 529 ADERAKILASEVIGLEEKALRL 550 (796)
Q Consensus 529 A~ERaK~LAaEVV~LEEk~lqL 550 (796)
..++...|......|++++.+|
T Consensus 79 ~~~~~~~L~~~~~~l~~~i~~L 100 (142)
T 3gp4_A 79 LEARAELLKKQRIELKNRIDVM 100 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666655
No 199
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=31.17 E-value=1.4e+02 Score=32.18 Aligned_cols=12 Identities=33% Similarity=0.509 Sum_probs=7.6
Q ss_pred HHHHHHHHHhhc
Q 003779 772 VERVLGWIMKLF 783 (796)
Q Consensus 772 vervlgwimklf 783 (796)
|+|+++-|+--+
T Consensus 389 v~R~i~allE~~ 400 (425)
T 2dq3_A 389 VGRTLAAILENY 400 (425)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 677776666544
No 200
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=30.87 E-value=1.2e+02 Score=25.85 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 003779 489 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 520 (796)
Q Consensus 489 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD 520 (796)
..|.+.|..|..|+.|...-...++.+..|||
T Consensus 2 ~~m~aiKkkmqaLk~Ekdna~e~~e~lE~ERd 33 (75)
T 3mtu_A 2 ASMDAIKKKMQMLKLDKENALDRAEQAEADKD 33 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45777788886555554444444444444444
No 201
>3va9_A Sensor histidine kinase; four-alpha-helix bundle, histidine kinase family 9, phosphotransfer, transferase two-component system; 2.30A {Rhodopseudomonas palustris}
Probab=30.65 E-value=3.1e+02 Score=24.96 Aligned_cols=31 Identities=19% Similarity=0.126 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 003779 526 CNAADERAKILASEVIGLEEKALRLRSNELK 556 (796)
Q Consensus 526 ~naA~ERaK~LAaEVV~LEEk~lqLRS~eLK 556 (796)
....+++.+.+..+++.-|.+++..|....+
T Consensus 118 Gk~~md~iR~~~~~~~~~E~~lL~~R~~~~~ 148 (164)
T 3va9_A 118 VDRLTERIETSLSVLTRAEQALLIQRLSKHD 148 (164)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888877776654
No 202
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=30.51 E-value=1.7e+02 Score=31.40 Aligned_cols=70 Identities=11% Similarity=0.115 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 003779 526 CNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 605 (796)
Q Consensus 526 ~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~ 605 (796)
.-+.+++-+.+..++..|+.+...+ |.+++. +-.+++. .+..+-..+-..|..|.++.+.++.+|..
T Consensus 30 ~~~~~~~~r~~~~~~~~l~~~~n~~-sk~i~~-----~~~~~~~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 30 LLALDREVQELKKRLQEVQTERNQV-AKRVPK-----APPEEKE-------ALIARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHSSS-----SCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-----hccccHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666665555533 333322 1112222 23333344556666777777777777775
Q ss_pred hcc
Q 003779 606 ASG 608 (796)
Q Consensus 606 asa 608 (796)
...
T Consensus 97 ~~~ 99 (421)
T 1ses_A 97 LLL 99 (421)
T ss_dssp HHT
T ss_pred HHH
Confidence 443
No 203
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=30.17 E-value=1.8e+02 Score=27.32 Aligned_cols=13 Identities=23% Similarity=0.537 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHH
Q 003779 491 VNQLKSEMEKLQE 503 (796)
Q Consensus 491 v~qLk~~mE~Lq~ 503 (796)
...|+.++++|+.
T Consensus 11 ~~~L~~El~~L~~ 23 (158)
T 1grj_A 11 AEKLREELDFLKS 23 (158)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4567777777766
No 204
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=30.09 E-value=4.1e+02 Score=26.12 Aligned_cols=35 Identities=9% Similarity=-0.018 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHH
Q 003779 566 SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQ 600 (796)
Q Consensus 566 ~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLq 600 (796)
.+..++...+..+.+.|.+-..-.|+.+...+-|+
T Consensus 118 ~~~~~~~~~i~k~I~KR~~kllDyd~~~~~~~kl~ 152 (237)
T 4avm_A 118 EIYVAQFSEIKERIAKRGRKLVDYDSARHHLEAVQ 152 (237)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666677777788888878788776665544
No 205
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=30.08 E-value=1.2e+02 Score=28.50 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHH
Q 003779 491 VNQLKSEMEKLQE 503 (796)
Q Consensus 491 v~qLk~~mE~Lq~ 503 (796)
...|+.+++.|..
T Consensus 11 ~~~L~~EL~~L~~ 23 (158)
T 2p4v_A 11 YEKLKQELNYLWR 23 (158)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4567777777754
No 206
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=29.77 E-value=1.4e+02 Score=24.23 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003779 531 ERAKILASEVIGLEEKALRL 550 (796)
Q Consensus 531 ERaK~LAaEVV~LEEk~lqL 550 (796)
+|...|++++..|.++-.+|
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL 28 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKL 28 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555554444
No 207
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=29.15 E-value=1.5e+02 Score=32.84 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 003779 582 RQDFQSTIEALQEEKKMMQSKLRKASG 608 (796)
Q Consensus 582 R~~l~stIdaLQEEKklLqSKLR~asa 608 (796)
...+-..|.+|.++.+.++.+|.....
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l~ 139 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLML 139 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777888888888888876443
No 208
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=29.06 E-value=2.6e+02 Score=24.41 Aligned_cols=52 Identities=13% Similarity=0.270 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 003779 494 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL 555 (796)
Q Consensus 494 Lk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eL 555 (796)
|.+.+++|+.-+..=.-.++-|.+||.++|+ +|.+=+..||.++...+...+
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~----------KLKqRit~LE~~~~~~~~~~~ 56 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQ----------KLKQRLTKVEKFLKPLIDTEF 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhcccCCCch
Confidence 5566666666666666677888888888764 445556667776666555443
No 209
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=29.01 E-value=2.7e+02 Score=23.66 Aligned_cols=53 Identities=15% Similarity=0.123 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHhhHHHH
Q 003779 440 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE---NSSLTDSYNQQRSVVN 492 (796)
Q Consensus 440 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~E---NsaLt~~yNqQ~~~v~ 492 (796)
=+|..|++++.+|..-.-.|+-.|+.-+..++.|... --.-...|.+.-..-.
T Consensus 11 v~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~ 66 (103)
T 4i0x_B 11 FDLDHIEQVTSRARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWM 66 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHH
Confidence 4789999999999999999999998888888888877 3444555554443333
No 210
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=28.61 E-value=2.9e+02 Score=24.04 Aligned_cols=44 Identities=25% Similarity=0.366 Sum_probs=25.6
Q ss_pred HhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 003779 553 NELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 603 (796)
Q Consensus 553 ~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKL 603 (796)
..+.+..+++.++.|+..++-+++ .+.-.|+.|++.-+-++.-|
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE-------~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQ-------ENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 456666666667766666666666 33344555555555555444
No 211
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=28.47 E-value=3.4e+02 Score=24.71 Aligned_cols=66 Identities=12% Similarity=0.280 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 003779 445 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLT-DSYNQQRSVVNQLKSEMEKLQEEIKVQLV 510 (796)
Q Consensus 445 LqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt-~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~ 510 (796)
|++..+++|.---.|--+-++-+.-.++.......+- .-|-++.++|++|+.++.+|++.++....
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666667776666666666666665566555555553 34777889999999999999987665544
No 212
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=28.47 E-value=99 Score=28.86 Aligned_cols=61 Identities=13% Similarity=0.245 Sum_probs=37.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003779 439 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 505 (796)
Q Consensus 439 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei 505 (796)
.++|.+|++.++..+.++-....+++.+++..+ | .||.......++| ..+...+..|+.++
T Consensus 9 ~~g~~~L~~el~~~~~~r~~~~~~i~~A~~~GD-l-sEnaey~aak~~q----~~~e~ri~~L~~~L 69 (156)
T 2f23_A 9 KAGYERLMQQLERERERLQEATKILQELMESSD-D-YDDSGLEAAKQEK----ARIEARIDSLEDIL 69 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC-C-SCSHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-c-hhhhhHHHHHHHH----HHHHHHHHHHHHHH
Confidence 578999999999977777777777776665411 0 2665544444444 34444555555543
No 213
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=27.85 E-value=6.2e+02 Score=27.55 Aligned_cols=12 Identities=8% Similarity=0.324 Sum_probs=5.3
Q ss_pred hhHHHHHHHHHH
Q 003779 440 EDFAALEQHIED 451 (796)
Q Consensus 440 ~~faaLqqhIeD 451 (796)
.+|..||..+++
T Consensus 38 ~~l~~LE~~l~e 49 (409)
T 1m1j_C 38 GELLEIEGLLQQ 49 (409)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 344555444333
No 214
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=27.13 E-value=2.2e+02 Score=23.33 Aligned_cols=24 Identities=25% Similarity=0.255 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 527 NAADERAKILASEVIGLEEKALRL 550 (796)
Q Consensus 527 naA~ERaK~LAaEVV~LEEk~lqL 550 (796)
..-.++...|..++..|+.+-..|
T Consensus 19 ~KKk~~~~~le~~~~~L~~~N~~L 42 (63)
T 1ci6_A 19 QKKRAEQEALTGECKELEKKNEAL 42 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444
No 215
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=27.06 E-value=3.8e+02 Score=24.83 Aligned_cols=68 Identities=12% Similarity=0.302 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 003779 442 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLT-DSYNQQRSVVNQLKSEMEKLQEEIKVQL 509 (796)
Q Consensus 442 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt-~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~ 509 (796)
-+.|++..+++|.---.|--+-++-++-.++.......+- ..|-++.++|++|+.++.+|++.++...
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888887777777777776666666666665554 3467788999999999999998765543
No 216
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=25.98 E-value=1e+02 Score=31.93 Aligned_cols=14 Identities=14% Similarity=0.451 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 003779 589 IEALQEEKKMMQSK 602 (796)
Q Consensus 589 IdaLQEEKklLqSK 602 (796)
+++||+.++..+..
T Consensus 219 l~~Lqk~~~~~~~~ 232 (315)
T 2ve7_A 219 LKRLQKSADLYKDR 232 (315)
T ss_dssp TTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555444433
No 217
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=25.83 E-value=1.4e+02 Score=28.06 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 003779 439 NEDFAALEQHIEDL-TQEKFALQRSLEASRAL 469 (796)
Q Consensus 439 ~~~faaLqqhIeDL-T~EKfaLqR~L~~s~~l 469 (796)
.+.+.+|++.++.| +.++-.+..+++.+++.
T Consensus 8 ~~g~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~ 39 (158)
T 2p4v_A 8 REGYEKLKQELNYLWREERPEVTKKVTWAASL 39 (158)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHhC
Confidence 57899999999999 66888888887776653
No 218
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=25.81 E-value=6.2e+02 Score=27.37 Aligned_cols=42 Identities=24% Similarity=0.289 Sum_probs=26.4
Q ss_pred HHhhhhHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 003779 510 VELESFRNEYANVRLECNA-----ADERAKILASEVIGLEEKALRLR 551 (796)
Q Consensus 510 ~~le~l~aErDaAq~E~na-----A~ERaK~LAaEVV~LEEk~lqLR 551 (796)
+.++.+..++........+ -.++++.+..|.-.|+..+..++
T Consensus 25 ~~l~~~~~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~ 71 (365)
T 1gqe_A 25 LDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLD 71 (365)
T ss_dssp TTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554444443333222 25788899999999998888774
No 219
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Probab=25.40 E-value=4.3e+02 Score=24.81 Aligned_cols=24 Identities=4% Similarity=0.160 Sum_probs=17.4
Q ss_pred cccccCCchhhHH-HHHHHHHHHHH
Q 003779 431 HGFYSTKHNEDFA-ALEQHIEDLTQ 454 (796)
Q Consensus 431 ~~F~s~~~~~~fa-aLqqhIeDLT~ 454 (796)
.+|.-+.+....+ ...++|+.+..
T Consensus 39 ~~y~~~~d~~~~~~~~~~~l~~~~~ 63 (258)
T 2yfa_A 39 LQYMIANGDDTAAANTLAKLDAFSK 63 (258)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 5677777777777 78888877743
No 220
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=25.31 E-value=92 Score=33.44 Aligned_cols=72 Identities=18% Similarity=0.330 Sum_probs=33.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 525 ECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 604 (796)
Q Consensus 525 E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 604 (796)
+.-+.+++-+.+..|+..|+.+-..+ |.++ ..++..- .+...+..+-..+-..|..|.++.+.++.+|.
T Consensus 31 ~~~~~~~~~r~~~~~~~~l~~~~n~~-sk~i------~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T 2dq3_A 31 KVLELDKRRREIIKRLEALRSERNKL-SKEI------GKLKREG----KDTTEIQNRVKELKEEIDRLEEELRKVEEELK 99 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHT------TGGGSSC----SCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH------HHHhhcC----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666665555533 2333 2211100 01122233333445556666666666666666
Q ss_pred hhc
Q 003779 605 KAS 607 (796)
Q Consensus 605 ~as 607 (796)
...
T Consensus 100 ~~~ 102 (425)
T 2dq3_A 100 NTL 102 (425)
T ss_dssp HHH
T ss_pred HHH
Confidence 533
No 221
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=25.24 E-value=3.7e+02 Score=24.79 Aligned_cols=49 Identities=27% Similarity=0.393 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003779 450 EDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 505 (796)
Q Consensus 450 eDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei 505 (796)
.+|-+|=+.|.+-+++. ..||--|-..-..-+..|.+|..+|++|..|-
T Consensus 33 qELIqEYl~LE~~~s~l-------e~e~~rlr~~~~~~~~~v~eLe~everL~~EN 81 (104)
T 3s9g_A 33 QELIKEYLELEKSLSRM-------EDENNRLRLESKRLDARVRELELELDRLRAEN 81 (104)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Confidence 35566667777776664 34444443333344778888888888888763
No 222
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=25.16 E-value=1.6e+02 Score=31.14 Aligned_cols=50 Identities=8% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 003779 491 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKA 547 (796)
Q Consensus 491 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~ 547 (796)
+..|.+++.+|+..|..+...+..|...++ ....+...|...|..|+++|
T Consensus 7 ~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~-------~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 7 VQKILEEVRILEQIGVSHDAQIQELSEMWR-------VNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
No 223
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=25.05 E-value=30 Score=29.19 Aligned_cols=59 Identities=17% Similarity=0.308 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003779 439 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 504 (796)
Q Consensus 439 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 504 (796)
++-|..|..+|-.+...|.+=---|..+.+-...|-.++..|.. .+.+|+.+.+.|++.
T Consensus 18 n~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~-------e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 18 KDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ-------DIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 34566666666554444554445556666666666666665533 344555555555444
No 224
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=24.85 E-value=7.8e+02 Score=27.72 Aligned_cols=28 Identities=25% Similarity=0.208 Sum_probs=17.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 003779 578 LEKERQDFQSTIEALQEEKKMMQSKLRK 605 (796)
Q Consensus 578 i~kER~~l~stIdaLQEEKklLqSKLR~ 605 (796)
++.||.+++.+.+++-+.|---|.+|.+
T Consensus 535 me~~~~~~~~e~~~~~~~~~~~~~~~~~ 562 (592)
T 1f5n_A 535 MENDRVQLLKEQERTLALKLQEQEQLLK 562 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888888777665555444444443
No 225
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=24.71 E-value=83 Score=25.76 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=17.6
Q ss_pred HHHHHHhHhhhhHHHhhhhHHHHHHH
Q 003779 546 KALRLRSNELKLERQLENSQSEISSY 571 (796)
Q Consensus 546 k~lqLRS~eLKleKElE~l~~Er~S~ 571 (796)
+....|+.-||.+||||.++......
T Consensus 9 qEi~Aqe~iLr~ErELEeAr~~La~i 34 (50)
T 2qdq_A 9 QIIAAQEEMLRKERELEEARKKLAQI 34 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456777788899988877554433
No 226
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=24.68 E-value=96 Score=24.97 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Q 003779 490 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECN 527 (796)
Q Consensus 490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n 527 (796)
.|..|+.++.+|+.++..+......+..|.|.+..+++
T Consensus 13 sV~KLek~ID~LEdeL~~eKek~~~i~~eLD~tl~el~ 50 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYAQKLKYKAISEELDHALNDMT 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999998888888888888888776654
No 227
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=24.54 E-value=6.7e+02 Score=26.79 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 003779 490 VVNQLKSEMEKLQ 502 (796)
Q Consensus 490 ~v~qLk~~mE~Lq 502 (796)
...+|..++.+|.
T Consensus 228 E~e~L~~~~~~L~ 240 (517)
T 4ad8_A 228 EEEGLNTELSRLS 240 (517)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 3344444444443
No 228
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=24.53 E-value=3e+02 Score=24.96 Aligned_cols=24 Identities=13% Similarity=0.328 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 003779 490 VVNQLKSEMEKLQEEIKVQLVELE 513 (796)
Q Consensus 490 ~v~qLk~~mE~Lq~Ei~aQ~~~le 513 (796)
.+..|+.++..|+..+..+..++.
T Consensus 19 e~~~l~~~~~el~~~l~~~~~~~~ 42 (125)
T 1joc_A 19 EIEKLQTKVLELQRKLDNTTAAVQ 42 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666555544443
No 229
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=24.45 E-value=2.5e+02 Score=22.62 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=6.9
Q ss_pred hhHHHhhhhHHHHHHHHH
Q 003779 556 KLERQLENSQSEISSYKK 573 (796)
Q Consensus 556 KleKElE~l~~Er~S~~~ 573 (796)
.++|-+.++++|+-+++.
T Consensus 28 nlekiianlrdeiarlen 45 (52)
T 3he5_B 28 NLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 333333334444333333
No 230
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.34 E-value=48 Score=35.92 Aligned_cols=13 Identities=23% Similarity=0.235 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHH
Q 003779 700 KEELVQALSSELA 712 (796)
Q Consensus 700 ReravsaLa~esr 712 (796)
|--++.||+.+..
T Consensus 228 KTllAkAiA~e~~ 240 (434)
T 4b4t_M 228 KTLLARACAAQTN 240 (434)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 4456677776643
No 231
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=24.30 E-value=1.8e+02 Score=26.56 Aligned_cols=34 Identities=9% Similarity=0.087 Sum_probs=25.6
Q ss_pred HhhHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhh
Q 003779 712 AQSSKLKDLNNELSRKLEHQTQRLELLTAQNMAN 745 (796)
Q Consensus 712 r~~~dLk~lN~ELsRKLE~qtQRLELltsq~ma~ 745 (796)
.++..|.+++++|.++++.++++|-...+..+..
T Consensus 32 ~~v~~l~~e~k~l~ke~~~l~~~~a~~~~~~l~~ 65 (171)
T 2zvf_A 32 KTVERFFEEWKDQRKEIERLKSVIADLWADILME 65 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788888888888888888876666665543
No 232
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=24.04 E-value=6.2e+02 Score=26.26 Aligned_cols=41 Identities=10% Similarity=0.107 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 003779 514 SFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE 554 (796)
Q Consensus 514 ~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~e 554 (796)
.++.+|-.++..+.+|..-+++--+=-..+-++.-++|...
T Consensus 116 ~~Ke~w~r~eKk~~dae~~l~KAK~~Y~~r~ee~ekak~~~ 156 (279)
T 3qwe_A 116 EFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGS 156 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34555555555555555555555555555555555555544
No 233
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=24.02 E-value=3.3e+02 Score=23.04 Aligned_cols=37 Identities=11% Similarity=0.192 Sum_probs=24.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003779 479 SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 515 (796)
Q Consensus 479 aLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l 515 (796)
.+..+|++....+..+...+.+|+.++.-...+++.|
T Consensus 5 ~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL 41 (107)
T 1fxk_A 5 HQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEEL 41 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777777666555555444
No 234
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=23.91 E-value=52 Score=28.56 Aligned_cols=63 Identities=30% Similarity=0.334 Sum_probs=39.1
Q ss_pred hhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHH
Q 003779 439 NEDFAALEQHIEDLT-QEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL 501 (796)
Q Consensus 439 ~~~faaLqqhIeDLT-~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~L 501 (796)
++-|..|..+|=.+. .+|.+=---|.++.+-...|-.++..+....++......+|+..+++|
T Consensus 22 n~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 22 KRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677776666553 345555556677777777777777777666555555555555555444
No 235
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=23.74 E-value=2.1e+02 Score=24.29 Aligned_cols=9 Identities=22% Similarity=0.412 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 003779 540 VIGLEEKAL 548 (796)
Q Consensus 540 VV~LEEk~l 548 (796)
+..||.++.
T Consensus 31 i~~LE~~v~ 39 (70)
T 1gd2_E 31 LKALETQVV 39 (70)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333444443
No 236
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=23.59 E-value=5.3e+02 Score=25.26 Aligned_cols=52 Identities=17% Similarity=0.303 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 003779 542 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 593 (796)
Q Consensus 542 ~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ 593 (796)
.|..++..++....+++.+|+....+..-.++++.++.-|=.+|.+.-|...
T Consensus 100 ~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl 151 (170)
T 3l4q_C 100 RLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYL 151 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4555555566666666666666665555555555555444444444444443
No 237
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=23.31 E-value=1.1e+02 Score=25.23 Aligned_cols=37 Identities=11% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHH
Q 003779 700 KEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLE 736 (796)
Q Consensus 700 ReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLE 736 (796)
|.+=...+.....++..|+..|.+|..+++.+++.|.
T Consensus 25 R~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 25 RARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 238
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=23.13 E-value=1.3e+02 Score=27.62 Aligned_cols=10 Identities=20% Similarity=0.361 Sum_probs=4.8
Q ss_pred HHHhhHHHHH
Q 003779 684 RMIHNINALI 693 (796)
Q Consensus 684 R~IdSInaLi 693 (796)
..++.+..++
T Consensus 157 ~al~~~~~~~ 166 (171)
T 2zvf_A 157 EMLDVIFRFL 166 (171)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455554444
No 239
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=22.67 E-value=2e+02 Score=23.14 Aligned_cols=31 Identities=13% Similarity=0.031 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 003779 525 ECNAADERAKILASEVIGLEEKALRLRSNEL 555 (796)
Q Consensus 525 E~naA~ERaK~LAaEVV~LEEk~lqLRS~eL 555 (796)
.+..|--..++|+.+|..||+++...+..-.
T Consensus 6 ~aefAERsV~KLek~ID~LEdeL~~eKek~~ 36 (52)
T 2z5i_A 6 KNYHLENEVARLKKLVDDLEDELYAQKLKYK 36 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3455667788899999999988775543333
No 240
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=22.20 E-value=3e+02 Score=24.90 Aligned_cols=12 Identities=8% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH
Q 003779 447 QHIEDLTQEKFA 458 (796)
Q Consensus 447 qhIeDLT~EKfa 458 (796)
++|-++|.-..+
T Consensus 16 ~~iv~~TSsncs 27 (96)
T 1t3j_A 16 RGSHMFTSANCS 27 (96)
T ss_dssp ------------
T ss_pred hhhHHHHhcchH
Confidence 455555555554
No 241
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=22.15 E-value=1.5e+02 Score=23.81 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=18.4
Q ss_pred HHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 003779 545 EKALRLRSNELKLERQLENSQSEISSYKKKIS 576 (796)
Q Consensus 545 Ek~lqLRS~eLKleKElE~l~~Er~S~~~q~s 576 (796)
|-|+-|-|+.+|+-|+|.+...+|-.+..+++
T Consensus 4 etcmslasqvvkltkql~eqt~~rv~lq~qlq 35 (48)
T 2kes_A 4 ETCMSLASQVVKLTKQLKEQTVERVTLQNQLQ 35 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666555555554444
No 242
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=22.08 E-value=4.5e+02 Score=24.20 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=13.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Q 003779 479 SLTDSYNQQRSVVNQLKSEMEKLQE 503 (796)
Q Consensus 479 aLt~~yNqQ~~~v~qLk~~mE~Lq~ 503 (796)
.|...|=+.-..++.+.++-.+|++
T Consensus 34 ELIqEYl~LE~~~s~le~e~~rlr~ 58 (104)
T 3s9g_A 34 ELIKEYLELEKSLSRMEDENNRLRL 58 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555444455555555555555
No 243
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=22.02 E-value=2.7e+02 Score=26.94 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=0.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHH
Q 003779 579 EKERQDFQSTIEALQEEKKMMQSKL 603 (796)
Q Consensus 579 ~kER~~l~stIdaLQEEKklLqSKL 603 (796)
+.-|+.+.-.+++.++-||-+...|
T Consensus 114 eASRqgLrRDLeASReAKKqlEadl 138 (146)
T 2xnx_M 114 DASRQSLRRDLDASREAKKQVEKDL 138 (146)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557888888889888888776655
No 244
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=21.94 E-value=2.8e+02 Score=26.01 Aligned_cols=103 Identities=14% Similarity=0.222 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------HhhhhHHHHHHHHHhhhHHHHHHH
Q 003779 462 SLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV-------ELESFRNEYANVRLECNAADERAK 534 (796)
Q Consensus 462 ~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~-------~le~l~aErDaAq~E~naA~ERaK 534 (796)
.|+.|++|+..++.+-+.=++++=+....+..++..++-|.+-+...-- ..+.+. -.-..|..++-+..
T Consensus 24 DL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~v~~n~~LL~EML~~~~p~~~~~~~d~Ell~----eL~~~ck~~qp~i~ 99 (140)
T 1o3x_A 24 DLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMK----ELYQRCERMRPTLF 99 (140)
T ss_dssp ---CCCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccHHHHH----HHHHHHHHHHHHHH
Confidence 4778899999999887777888888888888888888776665433211 111111 12234666666666
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHH
Q 003779 535 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE 579 (796)
Q Consensus 535 ~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~ 579 (796)
.|+.|...=|+ ++ -++=.+.+++.++..+|..+.
T Consensus 100 ~li~e~~ddee-~l----------~elL~~ND~ln~vl~kY~~~~ 133 (140)
T 1o3x_A 100 RLASDTEDNDE-AL----------AEILQANDNLTQVINLYKQLV 133 (140)
T ss_dssp HHHTTCTTCHH-HH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCHH-HH----------HHHHHhhHHHHHHHHHHHHHh
Confidence 66655421111 11 122246677777777777553
No 245
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=21.61 E-value=1.3e+02 Score=22.88 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003779 443 AALEQHIEDLTQEKFALQRSLEASRALS 470 (796)
Q Consensus 443 aaLqqhIeDLT~EKfaLqR~L~~s~~l~ 470 (796)
.-||.-||+|+.+|..|+-.+++-++|.
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4588899999999999988888877664
No 246
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=21.53 E-value=1.8e+02 Score=23.37 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHH
Q 003779 532 RAKILASEVIGLEEKALRLRSNELKLERQLENSQS 566 (796)
Q Consensus 532 RaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~ 566 (796)
---.||++||.|..++.+--...+.++++|..+-+
T Consensus 5 tcmslasqvvkltkql~eqt~~rv~lq~qlq~lle 39 (48)
T 2kes_A 5 TCMSLASQVVKLTKQLKEQTVERVTLQNQLQQFLE 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34579999999999999888899999999888764
No 247
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=21.19 E-value=3.9e+02 Score=22.87 Aligned_cols=40 Identities=23% Similarity=0.322 Sum_probs=26.6
Q ss_pred HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 003779 569 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 608 (796)
Q Consensus 569 ~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa 608 (796)
..+..+...|+++-..+...++.++++.+.++.+|+.+-.
T Consensus 73 ~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 73 AELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4445555555666666777777777777777777776543
No 248
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=21.10 E-value=4.3e+02 Score=23.28 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=20.6
Q ss_pred HHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 003779 574 KISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 608 (796)
Q Consensus 574 q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa 608 (796)
++.-|++|-..|...|+.|+.|...|..-|.+.+.
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 34444455556667777777777777777765443
No 249
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=21.09 E-value=36 Score=32.00 Aligned_cols=42 Identities=17% Similarity=0.306 Sum_probs=30.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 003779 438 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSY 484 (796)
Q Consensus 438 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~y 484 (796)
..|||...-+|+.+||.|-+. ++++++|+..++.--.|.++|
T Consensus 3 r~ddf~~r~~hl~~l~d~el~-----~rar~LA~kIv~pv~el~~~h 44 (121)
T 3kp1_E 3 RADDFQQRRAHLANLSDEELQ-----TRFWEMAEKIVDPLLDLGKKN 44 (121)
T ss_dssp ---CHHHHTGGGTTCCHHHHH-----HHHHHHHHHHHHHHHHHHHHE
T ss_pred chhHHHHHHHHHHhCCHHHHH-----HHHHHHHHHHHHHHHHHHHcC
Confidence 468999999999999999764 567777777777666666654
No 250
>3zwh_Q Myosin-9; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} PDB: 2lnk_C
Probab=20.95 E-value=33 Score=27.41 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=22.4
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 003779 522 VRLECNAADERAKILASEVIGLEEKAL 548 (796)
Q Consensus 522 Aq~E~naA~ERaK~LAaEVV~LEEk~l 548 (796)
+|+|+.+|.||+..+..+|-.|-.+..
T Consensus 4 lQrELeEa~Erae~ae~~vnkLR~k~R 30 (45)
T 3zwh_Q 4 LQRELEDATETADAMNREVSSLKNKLR 30 (45)
T ss_dssp SSSHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999888887766553
No 251
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=20.27 E-value=1.6e+02 Score=22.04 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003779 490 VVNQLKSEMEKLQEEIKVQ 508 (796)
Q Consensus 490 ~v~qLk~~mE~Lq~Ei~aQ 508 (796)
.+.+||.++.-|..||.+-
T Consensus 3 eiaalkqeiaalkkeiaal 21 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAAL 21 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4555666555555555443
No 252
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=20.16 E-value=2.8e+02 Score=25.84 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003779 528 AADERAKILASEVIGLEEKAL 548 (796)
Q Consensus 528 aA~ERaK~LAaEVV~LEEk~l 548 (796)
+|.++-..+.+.+..|+.++.
T Consensus 50 aak~~q~~~e~ri~~L~~~L~ 70 (156)
T 2f23_A 50 AAKQEKARIEARIDSLEDILS 70 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 253
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.05 E-value=1.2e+02 Score=32.76 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHH
Q 003779 699 EKEELVQALSSEL 711 (796)
Q Consensus 699 EReravsaLa~es 711 (796)
.|--+++||+.+.
T Consensus 218 GKT~lakAiA~~~ 230 (428)
T 4b4t_K 218 GKTMLVKAVANST 230 (428)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 3556777777765
No 254
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=20.04 E-value=1.2e+02 Score=29.40 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Q 003779 584 DFQSTIEALQEEKKMMQSKLRKAS 607 (796)
Q Consensus 584 ~l~stIdaLQEEKklLqSKLR~as 607 (796)
.+...+.+|+++++.|...+.+..
T Consensus 84 ~~ea~la~l~~~~~~LeAE~aKLe 107 (146)
T 2xnx_M 84 NAKLELDQLSSEKEQLTIEKAKLE 107 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444455555555555554443
Done!