BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003781
(796 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 285 bits (729), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 144/256 (56%), Positives = 190/256 (74%), Gaps = 12/256 (4%)
Query: 7 KKNGEFPSDAGVIPRAVKQIFDILEAQHAEYSMKVTFLELYNEEISDLLALEETSKF--V 64
K + E SD G+IPRA+ +FD L EY+M++++LELYNEE+ DLL+ ++T+K
Sbjct: 127 KSSWEDDSDIGIIPRALSHLFDELRMMEVEYTMRISYLELYNEELCDLLSTDDTTKIRIF 186
Query: 65 DDKSKKPIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSH 124
DD +KK G V ++GLEE V + D++YK+LEKG +R+TA TL+N QSSRSH
Sbjct: 187 DDSTKK---------GSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSH 237
Query: 125 SIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXX-XXXXXXXINKSLLTL 183
++FSI +HI+E EGE+M+K GKLNLVDLAGSEN+S++ IN+SLLTL
Sbjct: 238 TVFSIVVHIRENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTL 297
Query: 184 GRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHR 243
GRVI ALV+ + HVPYR+SKLTRLL++SLGG+TKT IIAT+SP +EETLSTL+YAHR
Sbjct: 298 GRVITALVDRAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHR 357
Query: 244 AKNIKNKPEINQKMMK 259
AKNI+NKPE+NQK+ K
Sbjct: 358 AKNIQNKPEVNQKLTK 373
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 283 bits (724), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 149/263 (56%), Positives = 186/263 (70%), Gaps = 19/263 (7%)
Query: 4 GARKKNGEFPSD----AGVIPRAVKQIFDILEAQHAEYSMKVTFLELYNEEISDLL---- 55
G R N E+ + AG+IPR + QIF+ L E+S+KV+ LE+YNEE+ DLL
Sbjct: 117 GERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSS 176
Query: 56 -ALEETSKFVDDKSKKPIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAET 114
E F D ++K+ GV ++GLEE V DE+Y+ILEKG+AKR TA T
Sbjct: 177 DVSERLQMFDDPRNKR----------GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAAT 226
Query: 115 LLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXX 174
L+N SSRSHS+FS+TIH+KE T +GEE++K GKLNLVDLAGSENI RS
Sbjct: 227 LMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAG 286
Query: 175 XINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEET 234
IN+SLLTLGRVI ALVE + HVPYR+SKLTR+L+DSLGG+T+T IIAT+SP+ LEET
Sbjct: 287 NINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEET 346
Query: 235 LSTLDYAHRAKNIKNKPEINQKM 257
LSTL+YAHRAKNI NKPE+NQK+
Sbjct: 347 LSTLEYAHRAKNILNKPEVNQKL 369
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 283 bits (723), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 149/262 (56%), Positives = 185/262 (70%), Gaps = 19/262 (7%)
Query: 4 GARKKNGEFPSD----AGVIPRAVKQIFDILEAQHAEYSMKVTFLELYNEEISDLL---- 55
G R N E+ + AG+IPR + QIF+ L E+S+KV+ LE+YNEE+ DLL
Sbjct: 117 GERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSS 176
Query: 56 -ALEETSKFVDDKSKKPIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAET 114
E F D ++K+ GV ++GLEE V DE+Y+ILEKG+AKR TA T
Sbjct: 177 DVSERLQMFDDPRNKR----------GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAAT 226
Query: 115 LLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXX 174
L+N SSRSHS+FS+TIH+KE T +GEE++K GKLNLVDLAGSENI RS
Sbjct: 227 LMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAG 286
Query: 175 XINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEET 234
IN+SLLTLGRVI ALVE + HVPYR+SKLTR+L+DSLGG+T+T IIAT+SP+ LEET
Sbjct: 287 NINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEET 346
Query: 235 LSTLDYAHRAKNIKNKPEINQK 256
LSTL+YAHRAKNI NKPE+NQK
Sbjct: 347 LSTLEYAHRAKNILNKPEVNQK 368
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 282 bits (722), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 149/262 (56%), Positives = 185/262 (70%), Gaps = 19/262 (7%)
Query: 4 GARKKNGEFPSD----AGVIPRAVKQIFDILEAQHAEYSMKVTFLELYNEEISDLL---- 55
G R N E+ + AG+IPR + QIF+ L E+S+KV+ LE+YNEE+ DLL
Sbjct: 117 GERSPNEEYTWEEVPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSS 176
Query: 56 -ALEETSKFVDDKSKKPIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAET 114
E F D ++K+ GV ++GLEE V DE+Y+ILEKG+AKR TA T
Sbjct: 177 DVSERLQMFDDPRNKR----------GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAAT 226
Query: 115 LLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXX 174
L+N SSRSHS+FS+TIH+KE T +GEE++K GKLNLVDLAGSENI RS
Sbjct: 227 LMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAG 286
Query: 175 XINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEET 234
IN+SLLTLGRVI ALVE + HVPYR+SKLTR+L+DSLGG+T+T IIAT+SP+ LEET
Sbjct: 287 NINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEET 346
Query: 235 LSTLDYAHRAKNIKNKPEINQK 256
LSTL+YAHRAKNI NKPE+NQK
Sbjct: 347 LSTLEYAHRAKNILNKPEVNQK 368
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 282 bits (722), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 149/262 (56%), Positives = 185/262 (70%), Gaps = 19/262 (7%)
Query: 4 GARKKNGEFPSD----AGVIPRAVKQIFDILEAQHAEYSMKVTFLELYNEEISDLL---- 55
G R N E+ + AG+IPR + QIF+ L E+S+KV+ LE+YNEE+ DLL
Sbjct: 116 GERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSS 175
Query: 56 -ALEETSKFVDDKSKKPIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAET 114
E F D ++K+ GV ++GLEE V DE+Y+ILEKG+AKR TA T
Sbjct: 176 DVSERLQMFDDPRNKR----------GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAAT 225
Query: 115 LLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXX 174
L+N SSRSHS+FS+TIH+KE T +GEE++K GKLNLVDLAGSENI RS
Sbjct: 226 LMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAG 285
Query: 175 XINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEET 234
IN+SLLTLGRVI ALVE + HVPYR+SKLTR+L+DSLGG+T+T IIAT+SP+ LEET
Sbjct: 286 NINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEET 345
Query: 235 LSTLDYAHRAKNIKNKPEINQK 256
LSTL+YAHRAKNI NKPE+NQK
Sbjct: 346 LSTLEYAHRAKNILNKPEVNQK 367
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 282 bits (721), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 148/261 (56%), Positives = 184/261 (70%), Gaps = 19/261 (7%)
Query: 4 GARKKNGEFPSD----AGVIPRAVKQIFDILEAQHAEYSMKVTFLELYNEEISDLL---- 55
G R N E+ + AG+IPR + QIF+ L E+S+KV+ LE+YNEE+ DLL
Sbjct: 117 GERSPNEEYCWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSS 176
Query: 56 -ALEETSKFVDDKSKKPIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAET 114
E F D ++K+ GV ++GLEE V DE+Y+ILEKG+AKR TA T
Sbjct: 177 DVSERLQMFDDPRNKR----------GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAAT 226
Query: 115 LLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXX 174
L+N SSRSHS+FS+TIH+KE T +GEE++K GKLNLVDLAGSENI RS
Sbjct: 227 LMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAG 286
Query: 175 XINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEET 234
IN+SLLTLGRVI ALVE + HVPYR+SKLTR+L+DSLGG+T+T IIAT+SP+ LEET
Sbjct: 287 NINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEET 346
Query: 235 LSTLDYAHRAKNIKNKPEINQ 255
LSTL+YAHRAKNI NKPE+NQ
Sbjct: 347 LSTLEYAHRAKNILNKPEVNQ 367
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 282 bits (721), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 149/262 (56%), Positives = 185/262 (70%), Gaps = 19/262 (7%)
Query: 4 GARKKNGEFPSD----AGVIPRAVKQIFDILEAQHAEYSMKVTFLELYNEEISDLL---- 55
G R N E+ + AG+IPR + QIF+ L E+S+KV+ LE+YNEE+ DLL
Sbjct: 108 GERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSS 167
Query: 56 -ALEETSKFVDDKSKKPIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAET 114
E F D ++K+ GV ++GLEE V DE+Y+ILEKG+AKR TA T
Sbjct: 168 DVSERLQMFDDPRNKR----------GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAAT 217
Query: 115 LLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXX 174
L+N SSRSHS+FS+TIH+KE T +GEE++K GKLNLVDLAGSENI RS
Sbjct: 218 LMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAG 277
Query: 175 XINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEET 234
IN+SLLTLGRVI ALVE + HVPYR+SKLTR+L+DSLGG+T+T IIAT+SP+ LEET
Sbjct: 278 NINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEET 337
Query: 235 LSTLDYAHRAKNIKNKPEINQK 256
LSTL+YAHRAKNI NKPE+NQK
Sbjct: 338 LSTLEYAHRAKNILNKPEVNQK 359
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 282 bits (721), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 149/262 (56%), Positives = 185/262 (70%), Gaps = 19/262 (7%)
Query: 4 GARKKNGEFPSD----AGVIPRAVKQIFDILEAQHAEYSMKVTFLELYNEEISDLL---- 55
G R N E+ + AG+IPR + QIF+ L E+S+KV+ LE+YNEE+ DLL
Sbjct: 119 GERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSS 178
Query: 56 -ALEETSKFVDDKSKKPIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAET 114
E F D ++K+ GV ++GLEE V DE+Y+ILEKG+AKR TA T
Sbjct: 179 DVSERLQMFDDPRNKR----------GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAAT 228
Query: 115 LLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXX 174
L+N SSRSHS+FS+TIH+KE T +GEE++K GKLNLVDLAGSENI RS
Sbjct: 229 LMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAG 288
Query: 175 XINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEET 234
IN+SLLTLGRVI ALVE + HVPYR+SKLTR+L+DSLGG+T+T IIAT+SP+ LEET
Sbjct: 289 NINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEET 348
Query: 235 LSTLDYAHRAKNIKNKPEINQK 256
LSTL+YAHRAKNI NKPE+NQK
Sbjct: 349 LSTLEYAHRAKNILNKPEVNQK 370
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 282 bits (721), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 150/263 (57%), Positives = 185/263 (70%), Gaps = 21/263 (7%)
Query: 4 GARKKNGEF-----PSDAGVIPRAVKQIFDILEAQHAEYSMKVTFLELYNEEISDLL--- 55
G R N E+ P D G+IPR + QIF+ L E+S+KV+ LE+YNEE+ DLL
Sbjct: 117 GERSPNEEYTWEEDPLD-GIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPS 175
Query: 56 --ALEETSKFVDDKSKKPIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAE 113
E F D ++K+ GV ++GLEE V DE+Y+ILEKG+AKR TA
Sbjct: 176 SDVSERLQMFDDPRNKR----------GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAA 225
Query: 114 TLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXX 173
TL+N SSRSHS+FS+TIH+KE T +GEE++K GKLNLVDLAGSENI RS
Sbjct: 226 TLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREA 285
Query: 174 XXINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEE 233
IN+SLLTLGRVI ALVE + HVPYR+SKLTR+L+DSLGG+T+T IIAT+SP+ LEE
Sbjct: 286 GNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEE 345
Query: 234 TLSTLDYAHRAKNIKNKPEINQK 256
TLSTL+YAHRAKNI NKPE+NQK
Sbjct: 346 TLSTLEYAHRAKNILNKPEVNQK 368
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 272 bits (696), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 145/257 (56%), Positives = 180/257 (70%), Gaps = 19/257 (7%)
Query: 4 GARKKNGEFPSD----AGVIPRAVKQIFDILEAQHAEYSMKVTFLELYNEEISDLL---- 55
G R N E+ + AG+IPR + QIF+ L E+S+KV+ LE+YNEE+ DLL
Sbjct: 102 GERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSS 161
Query: 56 -ALEETSKFVDDKSKKPIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAET 114
E F D ++K+ GV ++GLEE V DE+Y+ILEKG+AKR TA T
Sbjct: 162 DVSERLQMFDDPRNKR----------GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAAT 211
Query: 115 LLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXX 174
L+N SSRSHS+FS+TIH+KE T +GEE++K GKLNLVDLAGSENI RS
Sbjct: 212 LMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAG 271
Query: 175 XINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEET 234
IN+SLLTLGRVI ALVE + HVPYR+SKLTR+L+DSLGG+T+T IIAT+SP+ LEET
Sbjct: 272 NINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEET 331
Query: 235 LSTLDYAHRAKNIKNKP 251
LSTL+YAHRAKNI NKP
Sbjct: 332 LSTLEYAHRAKNILNKP 348
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 202 bits (514), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 113/256 (44%), Positives = 158/256 (61%), Gaps = 12/256 (4%)
Query: 13 PSDAGVIPRAVKQIFD-ILEAQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKP 71
P GVIP + IF I +Q+ +Y ++ ++LE+Y EEI DLL+ ++T K
Sbjct: 126 PEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQT---------KR 176
Query: 72 IALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITI 131
+ L E GV+V+ L + + EI ++ G+ R T +N+ SSRSH+IF ITI
Sbjct: 177 LELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITI 236
Query: 132 HIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALV 191
E +GE I+ GKLNLVDLAGSE +++ IN SL LG VI+ALV
Sbjct: 237 ECSEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALV 296
Query: 192 E-HSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNK 250
+ S H+PYRDSKLTRLL+DSLGG KT ++A V P+ + +EETL+TL YA+RAKNIKNK
Sbjct: 297 DGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNK 356
Query: 251 PEINQKMMKSAMIKDL 266
P +N+ K A++++
Sbjct: 357 PRVNED-PKDALLREF 371
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 200 bits (508), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 149/243 (61%), Gaps = 14/243 (5%)
Query: 15 DAGVIPRAVKQIFDILEAQHAEYSMKV--TFLELYNEEISDLLALEETSKFVDDKSKKPI 72
+ G IP + K +FD + + + + V ++LELYNEEI DL+ K+ +
Sbjct: 113 EPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLI-----------KNNTKL 161
Query: 73 ALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIH 132
L ED G++V GL VTTA E+ +++KG A R A T +N SSRSHSIF + I
Sbjct: 162 PLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIE 221
Query: 133 IKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALVE 192
E E +E+I+ GKLNLVDLAGSE S++ IN SL LG VI+ LVE
Sbjct: 222 CSEVI-ENKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVE 280
Query: 193 HSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNKPE 252
+ H+PYRDSKLTRLL+DSLGG +KT + A +SP+ +ET+STL YA RAK IKNKP
Sbjct: 281 GATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPR 340
Query: 253 INQ 255
IN+
Sbjct: 341 INE 343
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 189 bits (480), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 108/248 (43%), Positives = 153/248 (61%), Gaps = 16/248 (6%)
Query: 13 PSDAGVIPRAVKQIFDIL--EAQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKK 70
P GVIPR V+QIF + A + EY+++V+++E+Y E I DLLA + +
Sbjct: 106 PDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDN--------- 156
Query: 71 PIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSIT 130
+ + E+ GV+V+GL E V++ E+Y+++ +G R A T +N++SSRSHSIF IT
Sbjct: 157 -LPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVIT 215
Query: 131 IHIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINAL 190
I K K G+L LVDLAGSE + ++ INKSL LG VINAL
Sbjct: 216 ITQKNVETGSA---KSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINAL 272
Query: 191 VE-HSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKN 249
+ S HVPYRDSKLTR+L++SLGG ++T +I SPS + ETLSTL + RAK+IKN
Sbjct: 273 TDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKN 332
Query: 250 KPEINQKM 257
K ++N ++
Sbjct: 333 KAKVNAEL 340
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/269 (39%), Positives = 150/269 (55%), Gaps = 35/269 (13%)
Query: 13 PSDAGVIPRAVKQIFD-ILEAQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKP 71
P GVIP A + IF I +Q+ +Y ++ ++LE+Y EEI DLL+ E K
Sbjct: 126 PELRGVIPNAFEHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKE---------PGKR 176
Query: 72 IALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITI 131
+ L E+ + GV+++ L + EI ++ G+ R T +N+ SSRSH+IF IT+
Sbjct: 177 LELKENPETGVYIKDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITV 236
Query: 132 HIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXX------------------ 173
E +G++ I+ GKLNLVDLAGSE +++
Sbjct: 237 ECSERGSDGQDHIRVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGG 296
Query: 174 ------XXINKSLLTLGRVINALV-EHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSP 226
IN SL LG VI AL S H+PYRDSKLTRLL+DSLGG KT ++AT+ P
Sbjct: 297 ERPKEASKINLSLSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGP 356
Query: 227 SIHCLEETLSTLDYAHRAKNIKNKPEINQ 255
+ H +E+LSTL +A+RAKNIKNKP +N+
Sbjct: 357 ASHSYDESLSTLRFANRAKNIKNKPRVNE 385
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 147/244 (60%), Gaps = 15/244 (6%)
Query: 13 PSDAGVIPRAVKQIFDILEA--QHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKK 70
P G+IPR V+ IF+ + + ++ E+ +KV++ E+Y ++I DLL D SK
Sbjct: 102 PEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLL----------DVSKT 151
Query: 71 PIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSIT 130
+++ ED +V+G E V + DE+ +++G + R A T +N+ SSRSHSIF
Sbjct: 152 NLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIF--L 209
Query: 131 IHIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINAL 190
I++K+ + E+ + GKL LVDLAGSE +S++ INKSL LG VI+AL
Sbjct: 210 INVKQENTQTEQKLS-GKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISAL 268
Query: 191 VEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNK 250
E S +VPYRDSK+TR+L+DSLGG +T I+ SPS + ET STL + RAK IKN
Sbjct: 269 AEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNT 328
Query: 251 PEIN 254
+N
Sbjct: 329 VCVN 332
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 147/244 (60%), Gaps = 15/244 (6%)
Query: 13 PSDAGVIPRAVKQIFDILEA--QHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKK 70
P G+IPR V+ IF+ + + ++ E+ +KV++ E+Y ++I DLL D SK
Sbjct: 102 PEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLL----------DVSKT 151
Query: 71 PIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSIT 130
+++ ED +V+G E V + DE+ +++G + R A T +N+ SSRSHSIF
Sbjct: 152 NLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIF--L 209
Query: 131 IHIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINAL 190
I++K+ + E+ + GKL LVDLAGSE +S++ INKSL LG VI+AL
Sbjct: 210 INVKQENTQTEQKLS-GKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISAL 268
Query: 191 VEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNK 250
E S +VPYRDSK+TR+L+DSLGG +T I+ SPS + ET STL + RAK IKN
Sbjct: 269 AEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNT 328
Query: 251 PEIN 254
+N
Sbjct: 329 VCVN 332
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 169 bits (428), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 143/237 (60%), Gaps = 15/237 (6%)
Query: 13 PSDAGVIPRAVKQIFDILEA--QHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKK 70
P G+IPR V+ IF+ + + ++ E+ +KV++ E+Y ++I DLL D SK
Sbjct: 102 PEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLL----------DVSKT 151
Query: 71 PIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSIT 130
+++ ED +V+G E V + DE+ +++G + R A T +N+ SSRSHSIF
Sbjct: 152 NLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIF--L 209
Query: 131 IHIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINAL 190
I++K+ + E+ + GKL LVDLAGSE +S++ INKSL LG VI+AL
Sbjct: 210 INVKQENTQTEQKLS-GKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISAL 268
Query: 191 VEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNI 247
E S +VPYRDSK+TR+L+DSLGG +T I+ SPS + ET STL + RAK I
Sbjct: 269 AEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 150/244 (61%), Gaps = 16/244 (6%)
Query: 17 GVIPRAVKQIFDILEAQHA--EYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIAL 74
G+IPR V IF+ + A E+ +KV++ E+Y ++I DLL D SK +++
Sbjct: 113 GIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLL----------DVSKVNLSV 162
Query: 75 MEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIK 134
ED +V+G E V++ +++++++E+G + R A T +N+ SSRSHS+F I++K
Sbjct: 163 HEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVF--LINVK 220
Query: 135 ECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALVE-H 193
+ E ++ + GKL LVDLAGSE +S++ INKSL LG VI+AL + +
Sbjct: 221 QENLENQKKLS-GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGN 279
Query: 194 SGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNKPEI 253
H+PYRDSKLTR+L++SLGG +T I+ SP+ ET STLD+ RAK +KN +
Sbjct: 280 KTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCV 339
Query: 254 NQKM 257
N+++
Sbjct: 340 NEEL 343
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 161 bits (408), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/244 (40%), Positives = 142/244 (58%), Gaps = 15/244 (6%)
Query: 17 GVIPRAVKQIFD-ILEAQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALM 75
GVIPRA+ IF I + E+ ++V+++E+YNE I+DLL + KP+ +
Sbjct: 103 GVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLC--------GTQKMKPLIIR 154
Query: 76 EDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKE 135
ED V+V L EE+V T++ K + KG R ET +N++SSRSH+IF + + +E
Sbjct: 155 EDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESRE 214
Query: 136 -CTPEG-EEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALVEH 193
P E +K LNLVDLAGSE +++ IN+SL LG+VI L +
Sbjct: 215 KGEPSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDG 274
Query: 194 --SGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNKP 251
G + YRDSKLTR+L++SLGG KT II T++P +ETL+ L +A AK +KN P
Sbjct: 275 QVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTP 332
Query: 252 EINQ 255
+N+
Sbjct: 333 YVNE 336
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 159 bits (401), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 96/240 (40%), Positives = 140/240 (58%), Gaps = 21/240 (8%)
Query: 17 GVIPRAVKQIFDIL-EAQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALM 75
G++PRA+ + F ++ E + + V++LE+Y EE DLL + S+ I L
Sbjct: 115 GIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASR--------DIQLR 166
Query: 76 EDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKE 135
ED +G V + G++E V DE+ +LE G+A R T T LN SSRSH++F++T+ +
Sbjct: 167 EDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRG 226
Query: 136 CTP-------EGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVIN 188
P G+ ++ K + VDLAGSE + ++ IN SLL LG VI+
Sbjct: 227 RAPSRLPRPAPGQLLVS--KFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVIS 284
Query: 189 ALVE---HSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAK 245
AL + H+PYRDSK+TR+L+DSLGG KT +IA VSPS +ETL+TL+YA RA+
Sbjct: 285 ALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/257 (37%), Positives = 146/257 (56%), Gaps = 12/257 (4%)
Query: 14 SDAGVIPRAVKQIFDIL--EAQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKP 71
S+ G+ PRA+ ++F I+ ++ +S+K +ELY + + DLL ++ + D
Sbjct: 102 SNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLD----- 156
Query: 72 IALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITI 131
+ +D KG V V + ++T +E+ I+++GS +R T TL+N+QSSRSH I S+ I
Sbjct: 157 --IKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVII 214
Query: 132 HIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALV 191
E T + I GKL+ VDLAGSE + +S INKSL LG VI+AL
Sbjct: 215 ---ESTNLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALS 271
Query: 192 EHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNKP 251
+ H+PYR+ KLT L+ DSLGG KT + +SP+ L+ET ++L YA R ++I N P
Sbjct: 272 SGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDP 331
Query: 252 EINQKMMKSAMIKDLYS 268
N + A +K L S
Sbjct: 332 SKNVSSKEVARLKKLVS 348
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 142/240 (59%), Gaps = 20/240 (8%)
Query: 17 GVIPRAVKQIFDILEAQHAE---YSMKVTFLELYNEEISDLLALEETSKFVDDK-SKKPI 72
G+IPR +F+ + + E + ++V+++E+YNE++ DLL D K S++ +
Sbjct: 118 GLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLL---------DPKGSRQTL 168
Query: 73 ALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITI- 131
+ E G +V GL + VT+ +I ++ +G+ R A T +N++SSRSH++F IT+
Sbjct: 169 KVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLT 228
Query: 132 HIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALV 191
H G K GKL+LVDLAGSE +++ INKSL TLG VI+AL
Sbjct: 229 HTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALA 288
Query: 192 EHSG------HVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAK 245
+ S VPYRDS LT LL+DSLGG +KT ++ATVSP+ +ETLSTL YA RAK
Sbjct: 289 DQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 155 bits (393), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 95/240 (39%), Positives = 140/240 (58%), Gaps = 21/240 (8%)
Query: 17 GVIPRAVKQIFDIL-EAQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALM 75
G++PRA+ + F ++ E + + V++LE+Y EE DLL + S+ I L
Sbjct: 115 GIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASR--------DIQLR 166
Query: 76 EDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKE 135
ED +G V + G++E V DE+ +LE G+A R T T LN SSRSH++F++T+ +
Sbjct: 167 EDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRG 226
Query: 136 CTP-------EGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVIN 188
P G+ ++ K + VDLAGSE + ++ IN SLL LG VI+
Sbjct: 227 RAPSRLPRPAPGQLLVS--KFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVIS 284
Query: 189 ALVE---HSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAK 245
AL + ++PYRDSK+TR+L+DSLGG KT +IA VSPS +ETL+TL+YA RA+
Sbjct: 285 ALGDPQRRGSNIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 155 bits (393), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 136/240 (56%), Gaps = 12/240 (5%)
Query: 14 SDAGVIPRAVKQIFDIL--EAQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKP 71
S+ G+ PRA K++F+IL +++ +S+K +ELY + + DLL + +
Sbjct: 110 SNPGLTPRATKELFNILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRL-------K 162
Query: 72 IALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITI 131
+ + +D KG VFV + ++T +E+ ILE+GS +R + T +N++SSRSH I S+ I
Sbjct: 163 LEIKKDSKGMVFVENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVI 222
Query: 132 HIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALV 191
E + GKL+ VDLAGSE + +S INKSL LG VI AL
Sbjct: 223 ---ESIDLQTQSAARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALS 279
Query: 192 EHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNKP 251
+ H+PYR+ KLT L+ DSLGG KT + VSP+ L+ET ++L YA R + I N P
Sbjct: 280 SGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIVNDP 339
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 155 bits (392), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 128/213 (60%), Gaps = 14/213 (6%)
Query: 38 SMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGKGGVFVRGLEEEIVTTADE 97
S V++LE+YNE+I DLL + P+A+ ED + GV V GL +++E
Sbjct: 154 STAVSYLEVYNEQIRDLLV-----------NSGPLAVREDTQKGVVVHGLTLHQPKSSEE 202
Query: 98 IYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGS 157
I +L+ G+ R T +N SSRSH++F I + ++ T + ++ K++L+DLAGS
Sbjct: 203 ILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASINQNVRIAKMSLIDLAGS 262
Query: 158 ENISRSXXXXXXXXXXXXINKSLLTLGRVINALVEH---SGHVPYRDSKLTRLLRDSLGG 214
E S S IN+SLL LG VINAL + + H+PYR+SKLTRLL+DSLGG
Sbjct: 263 ERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGG 322
Query: 215 KTKTCIIATVSPSIHCLEETLSTLDYAHRAKNI 247
+T +IA VSPS ++T +TL YA+RAK+I
Sbjct: 323 NCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 153 bits (386), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 94/236 (39%), Positives = 133/236 (56%), Gaps = 12/236 (5%)
Query: 15 DAGVIPRAVKQIFDILE--AQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPI 72
+ G+ RA++ +F ++ A EY++ V+ E+YNE + DLL E K I
Sbjct: 104 NPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKL-------EI 156
Query: 73 ALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIH 132
L DG G ++V GL E V + D+I K+ E G R T T LN+ SSRSH++ +T+
Sbjct: 157 RLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVR 216
Query: 133 IKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALVE 192
+C+ + GKLNLVDLAGSE + +S INKSL LG VI AL
Sbjct: 217 GVDCS---TGLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRS 273
Query: 193 HSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIK 248
GHVP+R+SKLT LL+DSL G +KT ++ VSP ETL +L +A R ++++
Sbjct: 274 RQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVE 329
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 104/283 (36%), Positives = 145/283 (51%), Gaps = 39/283 (13%)
Query: 13 PSDAGVIPRAVKQIFDIL-----EAQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDK 67
P G+IPR + +F + E + Y++KV++ E+YNE + DLLA V +K
Sbjct: 158 PDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLA-----PVVPNK 212
Query: 68 SKKPIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIF 127
+ + E G +V+ L E V +EI + + G R A T +N SSRSH++F
Sbjct: 213 PPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVF 272
Query: 128 SIT---IHIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLG 184
+I IH T + E + ++ LVDLAGSE + INKSL TLG
Sbjct: 273 TIMLKQIHHDLETDDTTE--RSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLG 330
Query: 185 RVINALVEH------------SGH----------VPYRDSKLTRLLRDSLGGKTKTCIIA 222
RVI AL + SG VPYRDS LT LL+DSLGG +KT +IA
Sbjct: 331 RVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIA 390
Query: 223 TVSPSIHCLEETLSTLDYAHRAKNIKNKPEINQKMMKSAMIKD 265
+SP+ + +ETLSTL YA +AK I+ + +NQ SA +D
Sbjct: 391 CISPTDY--DETLSTLRYADQAKRIRTRAVVNQVDGVSAAERD 431
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 145 bits (367), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 140/255 (54%), Gaps = 17/255 (6%)
Query: 13 PSDAGVIPRAVKQIFDILEAQHAE---YSMKVT--FLELYNEEISDLLALEETSKFVDDK 67
P GVIPRA+ + + + AE +++ VT +LE+Y E++ DLL D
Sbjct: 120 PEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLL----------DP 169
Query: 68 SKKPIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIF 127
+ + + ED +G + + GL ++ +++ + + S R T LN++SSRSH++
Sbjct: 170 ASGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVL 229
Query: 128 SITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVI 187
+ + +E + + GKL L+DLAGSE+ R+ IN SL LG+V+
Sbjct: 230 LVKVDQRERLAPFRQ--REGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVV 287
Query: 188 NALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNI 247
+AL + VPYRDSKLTRLL+DSLGG + +IA ++P +T+S L++A R+K +
Sbjct: 288 DALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEV 347
Query: 248 KNKPEINQKMMKSAM 262
N+P N+ + A+
Sbjct: 348 INRPFTNESLQPHAL 362
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 142 bits (357), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/209 (41%), Positives = 120/209 (57%), Gaps = 21/209 (10%)
Query: 41 VTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGKGGVFVRGLEEEIVTTADEIYK 100
VTF E+YN ++ DLL K + ++EDGK V V GL+E +V +AD++ K
Sbjct: 193 VTFFEIYNGKLFDLL-----------NKKAKLRVLEDGKQQVQVVGLQEHLVNSADDVIK 241
Query: 101 ILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSE-N 159
+++ GSA R + +T N SSRSH+ F I + K G GK +LVDLAG+E
Sbjct: 242 MIDMGSACRTSGQTFANSNSSRSHACFQIILRAK-----GRMH---GKFSLVDLAGNERG 293
Query: 160 ISRSXXXXXXXXXXXXINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDS-LGGKTKT 218
S INKSLL L I AL ++ H P+R+SKLT++LRDS +G ++T
Sbjct: 294 ADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRT 353
Query: 219 CIIATVSPSIHCLEETLSTLDYAHRAKNI 247
C+IAT+SP I E TL+TL YA R K +
Sbjct: 354 CMIATISPGISSCEYTLNTLRYADRVKEL 382
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/254 (36%), Positives = 140/254 (55%), Gaps = 25/254 (9%)
Query: 17 GVIPRAVKQIFDILE---AQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIA 73
G+IP+ + +F + + YS++V+++E+Y E + DLL + K+K +
Sbjct: 117 GIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL---------NPKNKGNLR 167
Query: 74 LMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHI 133
+ E G +V L + VT+ ++I +++ G+ R A T +N+ SSRSH++F+I
Sbjct: 168 VREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQ 227
Query: 134 KECTPEGEEMI-KCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALVE 192
K E K K++LVDLAGSE + INKSL TLG+VI+AL E
Sbjct: 228 KRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 287
Query: 193 -HSG-----------HVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDY 240
SG +PYRDS LT LLR++LGG ++T ++A +SP+ +ETLSTL Y
Sbjct: 288 MDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRY 347
Query: 241 AHRAKNIKNKPEIN 254
A RAK I+N +N
Sbjct: 348 ADRAKQIRNTVSVN 361
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/254 (36%), Positives = 140/254 (55%), Gaps = 25/254 (9%)
Query: 17 GVIPRAVKQIFDILE---AQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIA 73
G+IP+ + +F + + YS++V+++E+Y E + DLL + K+K +
Sbjct: 133 GIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL---------NPKNKGNLR 183
Query: 74 LMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHI 133
+ E G +V L + VT+ ++I +++ G+ R A T +N+ SSRSH++F+I
Sbjct: 184 VREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQ 243
Query: 134 KECTPEGEEMI-KCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALVE 192
K E K K++LVDLAGSE + INKSL TLG+VI+AL E
Sbjct: 244 KRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 303
Query: 193 -HSG-----------HVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDY 240
SG +PYRDS LT LLR++LGG ++T ++A +SP+ +ETLSTL Y
Sbjct: 304 MDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRY 363
Query: 241 AHRAKNIKNKPEIN 254
A RAK I+N +N
Sbjct: 364 ADRAKQIRNTVSVN 377
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 140/255 (54%), Gaps = 25/255 (9%)
Query: 17 GVIPRAVKQIFDILE---AQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIA 73
G+IP+ + +F + + YS++V+++E+Y E + DLL + K+K +
Sbjct: 117 GIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL---------NPKNKGNLR 167
Query: 74 LMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHI 133
+ E G +V L + VT+ ++I +++ G+ R A T +N+ SSRSH++F+I
Sbjct: 168 VREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQ 227
Query: 134 KECTPEGEEMI-KCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALVE 192
K E K K++LVDLAGSE + INKSL TLG+VI+AL E
Sbjct: 228 KRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 287
Query: 193 -HSG-----------HVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDY 240
SG +PYRDS LT LLR++LGG ++T ++A +SP+ +ETLSTL Y
Sbjct: 288 MDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRY 347
Query: 241 AHRAKNIKNKPEINQ 255
A RAK I+N +N
Sbjct: 348 ADRAKQIRNTVSVNH 362
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 140/255 (54%), Gaps = 25/255 (9%)
Query: 17 GVIPRAVKQIFDILE---AQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIA 73
G+IP+ + +F + + YS++V+++E+Y E + DLL + K+K +
Sbjct: 117 GIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL---------NPKNKGNLR 167
Query: 74 LMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHI 133
+ E G +V L + VT+ ++I +++ G+ R A T +N+ SSRSH++F+I
Sbjct: 168 VREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQ 227
Query: 134 KECTPEGEEMI-KCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALVE 192
K E K K++LVDLAGSE + INKSL TLG+VI+AL E
Sbjct: 228 KRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 287
Query: 193 -HSG-----------HVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDY 240
SG +PYRDS LT LLR++LGG ++T ++A +SP+ +ETLSTL Y
Sbjct: 288 MDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRY 347
Query: 241 AHRAKNIKNKPEINQ 255
A RAK I+N +N
Sbjct: 348 ADRAKQIRNTVSVNH 362
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 117/209 (55%), Gaps = 21/209 (10%)
Query: 41 VTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGKGGVFVRGLEEEIVTTADEIYK 100
VTF E+YN ++ DLL K + ++ED + V V GL+E +VT AD++ K
Sbjct: 213 VTFFEIYNGKVFDLL-----------NKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIK 261
Query: 101 ILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSE-N 159
++ GSA R + +T N SSRSH+ F I + K G GK +LVDLAG+E
Sbjct: 262 MINMGSACRTSGQTFANSNSSRSHACFQILLRTK-----GRLH---GKFSLVDLAGNERG 313
Query: 160 ISRSXXXXXXXXXXXXINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDS-LGGKTKT 218
S INKSLL L I AL ++ H P+R+SKLT++LRDS +G ++T
Sbjct: 314 ADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRT 373
Query: 219 CIIATVSPSIHCLEETLSTLDYAHRAKNI 247
C+IA +SP I E TL+TL YA R K +
Sbjct: 374 CMIAMISPGISSCEYTLNTLRYADRVKEL 402
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 117/209 (55%), Gaps = 21/209 (10%)
Query: 41 VTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGKGGVFVRGLEEEIVTTADEIYK 100
VTF E+YN ++ DLL K + ++ED + V V GL+E +VT AD++ K
Sbjct: 141 VTFFEIYNGKVFDLL-----------NKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIK 189
Query: 101 ILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSE-N 159
++ GSA R + +T N SSRSH+ F I + K G GK +LVDLAG+E
Sbjct: 190 MINMGSACRTSGQTFANSNSSRSHACFQILLRTK-----GRLH---GKFSLVDLAGNERG 241
Query: 160 ISRSXXXXXXXXXXXXINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDS-LGGKTKT 218
S INKSLL L I AL ++ H P+R+SKLT++LRDS +G ++T
Sbjct: 242 ADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRT 301
Query: 219 CIIATVSPSIHCLEETLSTLDYAHRAKNI 247
C+IA +SP I E TL+TL YA R K +
Sbjct: 302 CMIAMISPGISSCEYTLNTLRYADRVKEL 330
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/232 (37%), Positives = 134/232 (57%), Gaps = 10/232 (4%)
Query: 17 GVIPRAVKQIFDILE--AQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIAL 74
G++PRA++Q+F ++E HA +++V++LE+YNE + DLL+ T +V S P+ +
Sbjct: 133 GILPRALQQVFRMIEERPTHA-ITVRVSYLEIYNESLFDLLS---TLPYVG-PSVTPMTI 187
Query: 75 MEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIK 134
+E+ +G VF++GL + + ++ + +L +G R A +NK SSRSH IF+I +
Sbjct: 188 VENPQG-VFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAH 246
Query: 135 ECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALVEHS 194
T E+ I K+NLVDLAGSE + +S INKSL L + I AL +
Sbjct: 247 SRTLSEEKYITS-KINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQK 305
Query: 195 -GHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAK 245
H+P+R KLT L+DSLGG ++ + LEETLS+L +A R K
Sbjct: 306 RDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMK 357
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 136 bits (342), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 126/239 (52%), Gaps = 18/239 (7%)
Query: 13 PSDAGVIPRAVKQIFDILEAQH---AEYSMKVTFLELYNEEISDLLALEETSKFVDDKSK 69
P GVIPR V +FD + EY +K TFLE+YNE + DLL+ +++
Sbjct: 154 PESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLS--------NEQKD 205
Query: 70 KPIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSI 129
I + ++ K ++V + EE V + + ++ R TA T N++SSRSH++ +
Sbjct: 206 MEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL 265
Query: 130 TIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINA 189
+ + E +E I G +NLVDLAGSE S IN+SL L VI A
Sbjct: 266 ELIGRHA--EKQE-ISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILA 318
Query: 190 LVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIK 248
L++ H+PYR+SKLT LL SLGG +KT + VSP C +E++ +L +A + K
Sbjct: 319 LLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCK 377
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 136 bits (342), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 126/239 (52%), Gaps = 18/239 (7%)
Query: 13 PSDAGVIPRAVKQIFDILEAQH---AEYSMKVTFLELYNEEISDLLALEETSKFVDDKSK 69
P GVIPR V +FD + EY +K TFLE+YNE + DLL+ +++
Sbjct: 160 PESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLS--------NEQKD 211
Query: 70 KPIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSI 129
I + ++ K ++V + EE V + + ++ R TA T N++SSRSH++ +
Sbjct: 212 MEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL 271
Query: 130 TIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINA 189
+ + E +E I G +NLVDLAGSE S IN+SL L VI A
Sbjct: 272 ELIGRHA--EKQE-ISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILA 324
Query: 190 LVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIK 248
L++ H+PYR+SKLT LL SLGG +KT + VSP C +E++ +L +A + K
Sbjct: 325 LLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCK 383
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 136 bits (342), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 126/239 (52%), Gaps = 18/239 (7%)
Query: 13 PSDAGVIPRAVKQIFDILEAQHA---EYSMKVTFLELYNEEISDLLALEETSKFVDDKSK 69
P GVIPR V +FD + EY +K TFLE+YNE + DLL+ +++
Sbjct: 168 PESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLS--------NEQKD 219
Query: 70 KPIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSI 129
I + ++ K ++V + EE V + + ++ R TA T N++SSRSH++ +
Sbjct: 220 MEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL 279
Query: 130 TIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINA 189
+ + E +E I G +NLVDLAGSE S IN+SL L VI A
Sbjct: 280 ELIGRHA--EKQE-ISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILA 332
Query: 190 LVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIK 248
L++ H+PYR+SKLT LL SLGG +KT + VSP C +E++ +L +A + K
Sbjct: 333 LLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCK 391
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 135 bits (340), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 126/239 (52%), Gaps = 18/239 (7%)
Query: 13 PSDAGVIPRAVKQIFDILEAQH---AEYSMKVTFLELYNEEISDLLALEETSKFVDDKSK 69
P GVIPR V +FD + EY +K TFLE+YNE + DLL+ +++
Sbjct: 157 PESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLS--------NEQKD 208
Query: 70 KPIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSI 129
I + ++ K ++V + EE V + + ++ R TA T N++SSRSH++ +
Sbjct: 209 MEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL 268
Query: 130 TIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINA 189
+ + E +E I G +NLVDLAGSE S IN+SL L VI A
Sbjct: 269 ELIGRHA--EKQE-ISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILA 321
Query: 190 LVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIK 248
L++ H+PYR+SKLT LL SLGG +KT + VSP C +E++ +L +A + K
Sbjct: 322 LLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCK 380
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 125/239 (52%), Gaps = 18/239 (7%)
Query: 13 PSDAGVIPRAVKQIFDILEAQH---AEYSMKVTFLELYNEEISDLLALEETSKFVDDKSK 69
P GVIPR V +FD + EY +K TFLE+YNE + DLL+ +++
Sbjct: 157 PESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLS--------NEQKD 208
Query: 70 KPIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSI 129
I + ++ K ++V + EE V + + ++ R TA T N++SSRSH++ +
Sbjct: 209 MEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL 268
Query: 130 TIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINA 189
+ + E +E I G +NLVDLAGSE S I +SL L VI A
Sbjct: 269 ELIGRHA--EKQE-ISVGSINLVDLAGSE----SPKTSTRMTETKNIKRSLSELTNVILA 321
Query: 190 LVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIK 248
L++ H+PYR+SKLT LL SLGG +KT + VSP C +E++ +L +A + K
Sbjct: 322 LLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCK 380
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 134/245 (54%), Gaps = 14/245 (5%)
Query: 13 PSDAGVIPRAVKQIF---DILEAQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDK-- 67
P D G++P + IF D L A+ Y + F+E+YNE I DLL S+ +D+
Sbjct: 127 PGD-GIVPATINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNA 185
Query: 68 -SKKPIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSI 126
SK I ++ K ++ + ++ + D + K+L++ + R TA T N+ SSRSHSI
Sbjct: 186 DSKHEIRHDQELKT-TYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSI 244
Query: 127 FSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRV 186
F IH+ E EG G LNLVDLAGSE ++ S INKSL LG V
Sbjct: 245 F--IIHL-EGKNEGTGEKSQGILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDV 301
Query: 187 INALVEHSG---HVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHR 243
I+AL G H+P+R+SKLT LL+ SL G +KT + +SP+ L ET+++L +A +
Sbjct: 302 IHALNSPDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASK 361
Query: 244 AKNIK 248
N K
Sbjct: 362 VNNTK 366
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 129 bits (324), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 131/237 (55%), Gaps = 15/237 (6%)
Query: 17 GVIPRAVKQIF-DI--LEAQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIA 73
G+IP ++K+IF DI L+ + Y+++ F+E+YNE I DLL + +D +K I
Sbjct: 486 GMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPK-----IDPNTKYEIK 540
Query: 74 LMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIH- 132
+D G V + + + ++ IL + + KR TA T N SSRSHSIF I +
Sbjct: 541 -HDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQG 599
Query: 133 IKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINAL-V 191
T E G LNL+DLAGSE ++ S INKSL LG VI++L +
Sbjct: 600 YNSLTKESS----YGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNL 655
Query: 192 EHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIK 248
+ HVPYR+SKLT LL+ SLGG +KT + +SP L ET+++L +A + N +
Sbjct: 656 KDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTR 712
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 129/236 (54%), Gaps = 24/236 (10%)
Query: 17 GVIPRAVKQIFDILEAQHA---EYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIA 73
G+ A + +F +L+ + E + TF E+Y+ ++ DLL K +
Sbjct: 204 GIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLL-----------NRKTKLR 252
Query: 74 LMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHI 133
++EDGK V V GL+E V +++ K+++ G++ R + +T N SSRSH++F I +
Sbjct: 253 VLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRR 312
Query: 134 KECTPEGEEMIKCGKLNLVDLAGSE-NISRSXXXXXXXXXXXXINKSLLTLGRVINALVE 192
K G+ GK +L+DLAG+E S INKSLL L I AL
Sbjct: 313 K-----GKLH---GKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGR 364
Query: 193 HSGHVPYRDSKLTRLLRDS-LGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNI 247
+ H P+R SKLT++LRDS +G ++TC+IAT+SP + E TL+TL YA+R K +
Sbjct: 365 NKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 133/241 (55%), Gaps = 13/241 (5%)
Query: 17 GVIPRAVKQIFDI---LEAQHAEYSMKVTFLELYNEEISDLLALEETSKFVDD--KSKKP 71
G+IP + IF L+ + Y M+ ++E+YNE I DLL ++ +D+ S+K
Sbjct: 109 GMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKH 168
Query: 72 IALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITI 131
+ K G ++ + +T+ ++ IL+K S R TA T N++SSRSHS+F + I
Sbjct: 169 DIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHI 228
Query: 132 HIKEC-TPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINAL 190
+ + T E + GKLNLVDLAGSE I+ S INKSL LG VI AL
Sbjct: 229 NGRNLHTGETSQ----GKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYAL 284
Query: 191 -VEHSG--HVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNI 247
+G ++P+R+SKLT LL+ SL G +KT + + P + + ETL++L +A + +
Sbjct: 285 NTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNST 344
Query: 248 K 248
K
Sbjct: 345 K 345
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 129/247 (52%), Gaps = 20/247 (8%)
Query: 13 PSDAGVIPRAVKQIFDI---LEAQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSK 69
P D G+IP + IF+ L+ + +Y + F+E+YNE I DLL + +K +D S
Sbjct: 161 PGD-GIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNK--EDTS- 216
Query: 70 KPIAL----MEDGKGGVFVRGLEEEIVTTADEIYKI-LEKGSAKRRTAETLLNKQSSRSH 124
I L D + + ++E+ +I L+K + R TA T N+ SSRSH
Sbjct: 217 --IGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSH 274
Query: 125 SIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLG 184
SIF IH+ + G LNLVDLAGSE I+ S INKSL LG
Sbjct: 275 SIF--IIHLSGSNAKTGAH-SYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALG 331
Query: 185 RVINALVEHSG---HVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYA 241
VI+AL + H+P+R+SKLT LL+ SL G +KT + +SPS + ETL++L +A
Sbjct: 332 DVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 391
Query: 242 HRAKNIK 248
+ + +
Sbjct: 392 SKVNSTR 398
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 116 bits (290), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 131/264 (49%), Gaps = 45/264 (17%)
Query: 1 MEGGARKKNGEFPSDAGVIPRAVKQIFDI---LEAQHAEYSMKVTFLELYNEEISDLLAL 57
MEGG G P G+IPRA++ +F + L Q YS +++E+YNE + DLLA
Sbjct: 133 MEGGP----GGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLA- 187
Query: 58 EETSKFVDDKSKKPIALMEDGKGG-VFVR----GLEEEIVTTA--------DEIYKILEK 104
++K G+GG +R G EE VT A E+ +L
Sbjct: 188 --------TGTRK-------GQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHL 232
Query: 105 GSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCG-KLNLVDLAGSE----N 159
R A T N++SSRSHS+F + I + + ++CG L+LVDLAGSE
Sbjct: 233 ARQNRAVARTAQNERSSRSHSVFQLQISGEHSS----RGLQCGAPLSLVDLAGSERLDPG 288
Query: 160 ISRSXXXXXXXXXXXXINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTC 219
++ IN SL TLG VI AL HVPYR+SKLT LL++SLGG K
Sbjct: 289 LALGPGERERLRETQAINSSLSTLGLVIMALSNKESHVPYRNSKLTYLLQNSLGGSAKML 348
Query: 220 IIATVSPSIHCLEETLSTLDYAHR 243
+ +SP + E+L++L +A +
Sbjct: 349 MFVNISPLEENVSESLNSLRFASK 372
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 129/260 (49%), Gaps = 46/260 (17%)
Query: 13 PSDAGVIPRAVKQIFDI---LEAQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSK 69
P D G+IP + IF+ L+ + +Y + F+E+YNE I DLL D+ +K
Sbjct: 116 PGD-GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLR-------SDNNNK 167
Query: 70 KPIALMEDGKGGVFVRGLEEEI------------------VTTADEIYKILEKGSAKRRT 111
+ ++ GL+ EI + + + + IL+K + R T
Sbjct: 168 EDTSI-----------GLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRST 216
Query: 112 AETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXX 171
A T N+ SSRSHSIF IH+ + G LNLVDLAGSE I+ S
Sbjct: 217 ASTASNEHSSRSHSIF--IIHLSGSNAKTGAH-SYGTLNLVDLAGSERINVSQVVGDRLR 273
Query: 172 XXXXINKSLLTLGRVINALVEHSG---HVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSI 228
INKSL LG VI+AL + H+P+R+SKLT LL+ SL G +KT + +SPS
Sbjct: 274 ETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSS 333
Query: 229 HCLEETLSTLDYAHRAKNIK 248
+ ETL++L +A + + +
Sbjct: 334 SHINETLNSLRFASKVNSTR 353
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 129/260 (49%), Gaps = 46/260 (17%)
Query: 13 PSDAGVIPRAVKQIFDI---LEAQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSK 69
P D G+IP + IF+ L+ + +Y + F+E+YNE I DLL D+ +K
Sbjct: 104 PGD-GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLR-------SDNNNK 155
Query: 70 KPIALMEDGKGGVFVRGLEEEI------------------VTTADEIYKILEKGSAKRRT 111
+ ++ GL+ EI + + + + IL+K + R T
Sbjct: 156 EDTSI-----------GLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRST 204
Query: 112 AETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXX 171
A T N+ SSRSHSIF IH+ + G LNLVDLAGSE I+ S
Sbjct: 205 ASTASNEHSSRSHSIF--IIHLSGSNAKTGAH-SYGTLNLVDLAGSERINVSQVVGDRLR 261
Query: 172 XXXXINKSLLTLGRVINALVEHSG---HVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSI 228
INKSL LG VI+AL + H+P+R+SKLT LL+ SL G +KT + +SPS
Sbjct: 262 ETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSS 321
Query: 229 HCLEETLSTLDYAHRAKNIK 248
+ ETL++L +A + + +
Sbjct: 322 SHINETLNSLRFASKVNSTR 341
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 112 bits (280), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 122/237 (51%), Gaps = 20/237 (8%)
Query: 16 AGVIPRAVKQIFDILEAQHAEYS--MKVTFLELYNEEISDLLALEETSKFVDDKSKKPIA 73
G+ A IF L + + + ++F E+Y ++ DLL + +K +A
Sbjct: 114 PGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLL-----------QKRKMVA 162
Query: 74 LMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHI 133
+E+GK V V+ L+ V T +E+ + G R+ N +SSRSH+I +I +
Sbjct: 163 ALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLK- 221
Query: 134 KECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXX-XXINKSLLTLGRVINALVE 192
+ + GK+ +DLAGSE + + IN+SLL L I A+
Sbjct: 222 -----DINKNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDS 276
Query: 193 HSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKN 249
H+P+RDS+LT++LRD GK+K+ +IA +SP+I C E+TL+TL Y+ R KN N
Sbjct: 277 DKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKNKGN 333
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 128/260 (49%), Gaps = 46/260 (17%)
Query: 13 PSDAGVIPRAVKQIFDI---LEAQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSK 69
P D G+IP + IF+ L+ + +Y + F+E+YNE I DLL D+ +K
Sbjct: 105 PGD-GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLR-------SDNNNK 156
Query: 70 KPIALMEDGKGGVFVRGLEEEI------------------VTTADEIYKILEKGSAKRRT 111
+ ++ GL+ EI + + + + IL+K + R T
Sbjct: 157 EDTSI-----------GLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRST 205
Query: 112 AETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXX 171
A T N+ SSRSHSIF IH+ + G LNLVDLAGS I+ S
Sbjct: 206 ASTASNEHSSRSHSIF--IIHLSGSNAKTGAH-SYGTLNLVDLAGSARINVSQVVGDRLR 262
Query: 172 XXXXINKSLLTLGRVINALVEHSG---HVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSI 228
INKSL LG VI+AL + H+P+R+SKLT LL+ SL G +KT + +SPS
Sbjct: 263 ETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSS 322
Query: 229 HCLEETLSTLDYAHRAKNIK 248
+ ETL++L +A + + +
Sbjct: 323 SHINETLNSLRFASKVNSTR 342
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 128/260 (49%), Gaps = 46/260 (17%)
Query: 13 PSDAGVIPRAVKQIFDI---LEAQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSK 69
P D G+IP + IF+ L+ + +Y + F+E+YNE I DLL D+ +K
Sbjct: 105 PGD-GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLR-------SDNNNK 156
Query: 70 KPIALMEDGKGGVFVRGLEEEI------------------VTTADEIYKILEKGSAKRRT 111
+ ++ GL+ EI + + + + IL+K + R T
Sbjct: 157 EDTSI-----------GLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRST 205
Query: 112 AETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXX 171
A T N+ SS SHSIF IH+ + G LNLVDLAGSE I+ S
Sbjct: 206 ASTASNEHSSASHSIF--IIHLSGSNAKTGAH-SYGTLNLVDLAGSERINVSQVVGDRLR 262
Query: 172 XXXXINKSLLTLGRVINALVEHSG---HVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSI 228
INKSL LG VI+AL + H+P+R+SKLT LL+ SL G +KT + +SPS
Sbjct: 263 ETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSS 322
Query: 229 HCLEETLSTLDYAHRAKNIK 248
+ ETL++L +A + + +
Sbjct: 323 SHINETLNSLRFASKVNSTR 342
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 128/260 (49%), Gaps = 46/260 (17%)
Query: 13 PSDAGVIPRAVKQIFDI---LEAQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSK 69
P D G+IP + IF+ L+ + +Y + F+E+YNE I DLL D+ +K
Sbjct: 105 PGD-GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLR-------SDNNNK 156
Query: 70 KPIALMEDGKGGVFVRGLEEEI------------------VTTADEIYKILEKGSAKRRT 111
+ ++ GL+ EI + + + + IL+K + R T
Sbjct: 157 EDTSI-----------GLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRST 205
Query: 112 AETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXX 171
A T N+ SSRSHSIF IH+ + G LNLVDLAGSE I+ S
Sbjct: 206 ASTASNEHSSRSHSIF--IIHLSGSNAKTGAH-SYGTLNLVDLAGSERINVSQVVGDRLR 262
Query: 172 XXXXINKSLLTLGRVINALVEHSG---HVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSI 228
I KSL LG VI+AL + H+P+R+SKLT LL+ SL G +KT + +SPS
Sbjct: 263 ETQNIKKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSS 322
Query: 229 HCLEETLSTLDYAHRAKNIK 248
+ ETL++L +A + + +
Sbjct: 323 SHINETLNSLRFASKVNSTR 342
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 122/243 (50%), Gaps = 33/243 (13%)
Query: 12 FPSDAGVIPRAVKQIFDILEAQHAE----YSMKVTFLELYNEEISDLLALEETSKFVDDK 67
P G++PRA+ IF+ + A+ + +F+E+YNE+ DLL V +
Sbjct: 121 LPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAAR 180
Query: 68 SKKPIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIF 127
++ L + + AD ++ ILE G+ RR T +N SSRSH+I
Sbjct: 181 CQRCTCL---------------PLHSQAD-LHHILELGTRNRRVRPTNMNSNSSRSHAI- 223
Query: 128 SITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVI 187
+TIH+K T ++N+VDLAGSE + R+ IN LL++ +V+
Sbjct: 224 -VTIHVKSKTHHS-------RMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVV 275
Query: 188 NALVEHSGH--VPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAK 245
++ +GH +PYRDS LT +L+ SL ++ +A +SP L ETLSTL + AK
Sbjct: 276 MSMA--AGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAK 333
Query: 246 NIK 248
++
Sbjct: 334 KLR 336
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 120/240 (50%), Gaps = 33/240 (13%)
Query: 12 FPSDAGVIPRAVKQIFDILEAQHAE----YSMKVTFLELYNEEISDLLALEETSKFVDDK 67
P G++PRA+ IF+ + A+ + +F+E+YNE+ DLL V +
Sbjct: 121 LPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAAR 180
Query: 68 SKKPIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIF 127
++ L + + AD ++ ILE G+ RR T +N SSRSH+I
Sbjct: 181 CQRCTCL---------------PLHSQAD-LHHILELGTRNRRVRPTNMNSNSSRSHAI- 223
Query: 128 SITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVI 187
+TIH+K T ++N+VDLAGSE + R+ IN LL++ +V+
Sbjct: 224 -VTIHVKSKTHHS-------RMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVV 275
Query: 188 NALVEHSGH--VPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAK 245
++ +GH +PYRDS LT +L+ SL ++ +A +SP L ETLSTL + AK
Sbjct: 276 MSMA--AGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAK 333
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 89/150 (59%), Gaps = 15/150 (10%)
Query: 13 PSDAGVIPRAVKQIFDILEA--QHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKK 70
P G+IPR IFD + + ++ E+ +KV++ E+Y ++I DLL D SK
Sbjct: 102 PQLMGIIPRIAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLL----------DVSKT 151
Query: 71 PIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSIT 130
+A+ ED +V+G E V++ +E+ ++++G A R A T +N+ SSRSHSIF
Sbjct: 152 NLAVHEDKNRVPYVKGCTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIF--L 209
Query: 131 IHIKECTPEGEEMIKCGKLNLVDLAGSENI 160
I+IK+ E E+ + GKL LVDLAGSE +
Sbjct: 210 INIKQENVETEKKLS-GKLYLVDLAGSEKV 238
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 177 NKSLLTLGRVINALVEHS-GHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETL 235
NKSL LG VI+AL E + HVPYRDSK+TR+L+DSLGG +T I+ SPS+ ET
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 236 STLDYAHRAKNIKNKPEIN 254
STL + RAK IKN +N
Sbjct: 61 STLMFGQRAKTIKNTVSVN 79
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 176 INKSLLTLGRVINALVEHS-GHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEET 234
INKSL LG VI+AL E + HVPYRDSK+TR+L+DSL G +T I+ SPS+ ET
Sbjct: 4 INKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAET 63
Query: 235 LSTLDYAHRAKNIKNKPEIN 254
STL + RAK IKN +N
Sbjct: 64 KSTLMFGQRAKTIKNTVSVN 83
>pdb|3OA7|A Chain A, Structure Of The C-Terminal Domain Of Cnm67, A Core
Component Of The Spindle Pole Body Of Saccharomyces
Cerevisiae
Length = 206
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 467 STKAEATEELRGRLGKLKAMYGSGIKALDGIAGELDGNSRSTFGDLNSEVSK 518
S + EA ++LR G + Y K+ + ++ ELD N RS FG+L S+
Sbjct: 26 SERTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELD-NLRSRFGNLEGNTSE 76
>pdb|3QX3|A Chain A, Human Topoisomerase Iibeta In Complex With Dna And
Etoposide
pdb|3QX3|B Chain B, Human Topoisomerase Iibeta In Complex With Dna And
Etoposide
Length = 803
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 619 NEERQLLEKVAELLASSNARKKQLVQMAVQDLRESASSRTSQLQKEMSTMQDST 672
N+ R +LEK+ + N KK L+QM VQ ES + + +E + +D T
Sbjct: 648 NQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEDET 701
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.127 0.337
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,087,076
Number of Sequences: 62578
Number of extensions: 639296
Number of successful extensions: 1791
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1567
Number of HSP's gapped (non-prelim): 99
length of query: 796
length of database: 14,973,337
effective HSP length: 107
effective length of query: 689
effective length of database: 8,277,491
effective search space: 5703191299
effective search space used: 5703191299
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)