Query 003781
Match_columns 796
No_of_seqs 380 out of 1859
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 11:55:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003781.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003781hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0243 Kinesin-like protein [ 100.0 8E-124 2E-128 1092.4 78.6 782 1-790 146-929 (1041)
2 KOG0245 Kinesin-like protein [ 100.0 9.3E-69 2E-73 617.9 20.4 315 2-333 99-426 (1221)
3 KOG4280 Kinesin-like protein [ 100.0 1.1E-68 2.3E-73 606.3 17.5 272 2-283 97-371 (574)
4 KOG0240 Kinesin (SMY1 subfamil 100.0 1.2E-62 2.6E-67 544.6 38.4 260 2-274 94-358 (607)
5 PLN03188 kinesin-12 family pro 100.0 2.6E-61 5.6E-66 570.6 26.0 278 2-289 177-481 (1320)
6 KOG0242 Kinesin-like protein [ 100.0 3.5E-60 7.5E-65 554.2 24.3 268 2-284 98-368 (675)
7 KOG0241 Kinesin-like protein [ 100.0 1.9E-58 4.1E-63 523.2 24.4 268 2-279 105-382 (1714)
8 cd01364 KISc_BimC_Eg5 Kinesin 100.0 5.1E-57 1.1E-61 496.3 25.8 248 2-256 93-352 (352)
9 cd01373 KISc_KLP2_like Kinesin 100.0 5.2E-57 1.1E-61 493.8 24.4 235 2-247 86-337 (337)
10 cd01370 KISc_KIP3_like Kinesin 100.0 4.5E-57 9.7E-62 494.5 23.7 235 2-247 99-338 (338)
11 cd01368 KISc_KIF23_like Kinesi 100.0 8.7E-56 1.9E-60 485.6 24.2 235 2-245 100-345 (345)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 3.3E-55 7.2E-60 482.8 25.7 245 2-254 100-356 (356)
13 KOG0244 Kinesin-like protein [ 100.0 2.4E-53 5.1E-58 492.5 35.6 255 15-281 93-350 (913)
14 cd01371 KISc_KIF3 Kinesin moto 100.0 9.7E-54 2.1E-58 467.2 25.6 237 2-247 93-333 (333)
15 cd01376 KISc_KID_like Kinesin 100.0 1.2E-53 2.7E-58 463.9 23.1 228 2-245 92-319 (319)
16 cd01367 KISc_KIF2_like Kinesin 100.0 1.3E-53 2.9E-58 464.3 22.4 226 2-245 96-322 (322)
17 cd01375 KISc_KIF9_like Kinesin 100.0 4.2E-53 9.1E-58 462.5 25.1 239 2-245 92-334 (334)
18 cd01374 KISc_CENP_E Kinesin mo 100.0 3.9E-53 8.5E-58 460.1 24.2 234 2-247 85-321 (321)
19 cd01372 KISc_KIF4 Kinesin moto 100.0 6.6E-53 1.4E-57 461.6 25.4 240 2-248 85-341 (341)
20 cd01369 KISc_KHC_KIF5 Kinesin 100.0 1.2E-52 2.5E-57 457.0 24.5 233 2-247 88-325 (325)
21 KOG0247 Kinesin-like protein [ 100.0 9.2E-52 2E-56 467.5 26.7 250 2-257 126-446 (809)
22 cd01366 KISc_C_terminal Kinesi 100.0 1E-51 2.2E-56 450.2 25.7 238 2-250 89-329 (329)
23 smart00129 KISc Kinesin motor, 100.0 7.5E-51 1.6E-55 444.1 25.5 241 2-254 91-335 (335)
24 PF00225 Kinesin: Kinesin moto 100.0 1.7E-51 3.7E-56 448.6 19.4 240 2-247 86-335 (335)
25 cd00106 KISc Kinesin motor dom 100.0 1E-48 2.2E-53 425.8 25.3 234 2-245 90-328 (328)
26 KOG0239 Kinesin (KAR3 subfamil 100.0 5.7E-50 1.2E-54 467.0 15.8 243 2-255 404-648 (670)
27 COG5059 KIP1 Kinesin-like prot 100.0 6.9E-48 1.5E-52 446.2 28.8 267 2-289 101-371 (568)
28 KOG0246 Kinesin-like protein [ 100.0 1E-46 2.2E-51 416.6 19.4 234 2-252 303-546 (676)
29 cd01363 Motor_domain Myosin an 100.0 2.9E-36 6.2E-41 304.1 13.6 129 98-226 58-186 (186)
30 KOG0243 Kinesin-like protein [ 98.6 0.0056 1.2E-07 75.3 53.4 62 261-331 448-509 (1041)
31 KOG0977 Nuclear envelope prote 98.0 0.054 1.2E-06 63.4 36.9 147 427-598 241-389 (546)
32 KOG0161 Myosin class II heavy 97.9 0.25 5.4E-06 65.5 68.3 113 661-775 1567-1683(1930)
33 KOG4674 Uncharacterized conser 97.7 0.4 8.7E-06 62.8 66.5 481 260-775 653-1197(1822)
34 KOG0161 Myosin class II heavy 97.7 0.49 1.1E-05 62.8 68.7 29 639-667 1316-1344(1930)
35 TIGR00606 rad50 rad50. This fa 97.7 0.47 1E-05 61.9 58.6 38 675-715 1116-1153(1311)
36 KOG0977 Nuclear envelope prote 97.5 0.35 7.5E-06 56.9 34.6 18 621-638 358-375 (546)
37 COG1196 Smc Chromosome segrega 97.5 0.74 1.6E-05 59.5 47.0 19 261-279 193-211 (1163)
38 KOG0250 DNA repair protein RAD 97.5 0.59 1.3E-05 58.3 38.4 36 562-599 509-544 (1074)
39 TIGR02168 SMC_prok_B chromosom 97.5 0.69 1.5E-05 58.7 54.2 14 265-278 674-687 (1179)
40 COG1196 Smc Chromosome segrega 97.4 0.81 1.7E-05 59.1 52.0 53 715-769 1054-1117(1163)
41 KOG0994 Extracellular matrix g 97.4 0.73 1.6E-05 57.5 52.3 21 234-254 1177-1197(1758)
42 PF10174 Cast: RIM-binding pro 97.4 0.68 1.5E-05 57.0 59.2 155 259-413 236-402 (775)
43 PRK04863 mukB cell division pr 97.3 1.2 2.6E-05 58.6 48.0 38 697-734 842-879 (1486)
44 PF07888 CALCOCO1: Calcium bin 97.3 0.61 1.3E-05 54.9 47.0 9 149-157 92-100 (546)
45 KOG4674 Uncharacterized conser 97.3 1.4 3E-05 58.1 56.5 93 601-695 1085-1178(1822)
46 PRK02224 chromosome segregatio 97.2 1.1 2.3E-05 56.0 63.1 10 761-770 779-788 (880)
47 TIGR02168 SMC_prok_B chromosom 97.2 1.2 2.6E-05 56.6 52.9 18 263-280 679-696 (1179)
48 TIGR02169 SMC_prok_A chromosom 97.2 1.4 2.9E-05 56.3 52.2 21 86-106 548-568 (1164)
49 KOG0971 Microtubule-associated 97.2 1.1 2.4E-05 54.8 42.0 151 265-417 228-410 (1243)
50 PF12128 DUF3584: Protein of u 97.1 1.7 3.7E-05 56.4 62.7 38 516-554 752-789 (1201)
51 PF00038 Filament: Intermediat 97.1 0.59 1.3E-05 51.1 39.2 103 263-368 20-131 (312)
52 PRK11637 AmiB activator; Provi 97.1 0.61 1.3E-05 53.6 29.5 11 266-276 45-55 (428)
53 PRK11637 AmiB activator; Provi 97.0 0.91 2E-05 52.2 30.6 17 262-278 48-64 (428)
54 TIGR02169 SMC_prok_A chromosom 97.0 2 4.3E-05 54.8 50.9 37 625-661 1002-1038(1164)
55 PF09726 Macoilin: Transmembra 96.9 0.91 2E-05 55.4 30.4 24 260-283 417-440 (697)
56 PF07888 CALCOCO1: Calcium bin 96.9 1.5 3.3E-05 51.7 47.1 24 474-497 286-309 (546)
57 KOG1029 Endocytic adaptor prot 96.8 1.9 4.1E-05 52.1 30.2 18 15-32 43-60 (1118)
58 KOG0995 Centromere-associated 96.6 2.4 5.1E-05 50.0 46.5 18 219-238 147-164 (581)
59 KOG1029 Endocytic adaptor prot 96.6 0.99 2.1E-05 54.4 26.1 50 441-490 544-593 (1118)
60 PF01442 Apolipoprotein: Apoli 96.5 0.97 2.1E-05 44.8 25.1 57 626-682 136-193 (202)
61 TIGR00606 rad50 rad50. This fa 96.3 6.7 0.00014 51.6 67.2 32 533-564 498-529 (1311)
62 KOG4643 Uncharacterized coiled 96.0 6.2 0.00013 49.2 47.5 54 228-288 172-225 (1195)
63 KOG0996 Structural maintenance 96.0 7.2 0.00015 49.5 42.2 25 390-414 399-423 (1293)
64 COG4942 Membrane-bound metallo 95.9 4.6 0.0001 46.3 31.0 40 460-499 213-252 (420)
65 PF00261 Tropomyosin: Tropomyo 95.8 3.1 6.8E-05 44.2 28.4 11 266-276 6-16 (237)
66 COG5185 HEC1 Protein involved 95.8 4.9 0.00011 46.3 36.9 55 509-563 492-546 (622)
67 PRK04863 mukB cell division pr 95.8 11 0.00024 50.0 50.0 19 263-281 232-250 (1486)
68 PF05667 DUF812: Protein of un 95.7 6.7 0.00015 47.3 33.8 21 579-599 554-574 (594)
69 KOG0994 Extracellular matrix g 95.6 9.6 0.00021 48.3 52.9 29 747-775 1718-1747(1758)
70 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.6 2.4 5.1E-05 41.1 20.1 108 303-413 22-129 (132)
71 KOG0612 Rho-associated, coiled 95.6 10 0.00022 48.3 44.0 23 259-281 463-485 (1317)
72 KOG0933 Structural maintenance 95.6 9.4 0.0002 47.8 40.3 35 87-121 548-582 (1174)
73 KOG0971 Microtubule-associated 95.2 11 0.00024 46.6 41.4 36 322-357 265-300 (1243)
74 COG3883 Uncharacterized protei 95.0 6.5 0.00014 42.6 27.0 40 337-376 63-102 (265)
75 PF15254 CCDC14: Coiled-coil d 94.8 11 0.00023 46.1 25.5 104 320-429 428-531 (861)
76 KOG0976 Rho/Rac1-interacting s 94.7 14 0.00031 45.1 62.8 111 304-414 91-205 (1265)
77 PRK04778 septation ring format 94.3 16 0.00035 43.8 51.5 101 394-494 110-221 (569)
78 PF00038 Filament: Intermediat 94.2 10 0.00023 41.4 39.4 32 338-369 52-83 (312)
79 PF06785 UPF0242: Uncharacteri 94.1 12 0.00026 41.6 22.1 37 528-564 279-321 (401)
80 KOG4673 Transcription factor T 93.9 20 0.00043 43.4 44.4 29 746-774 918-947 (961)
81 PF12252 SidE: Dot/Icm substra 93.8 26 0.00055 44.4 35.3 175 371-568 1106-1285(1439)
82 PF14915 CCDC144C: CCDC144C pr 93.7 13 0.00029 40.8 39.3 111 457-567 130-245 (305)
83 PRK04778 septation ring format 93.6 21 0.00045 42.9 48.8 44 304-347 111-154 (569)
84 PF10174 Cast: RIM-binding pro 93.6 25 0.00054 43.8 57.8 95 536-636 315-409 (775)
85 PRK09039 hypothetical protein; 93.5 16 0.00034 41.2 24.5 17 221-240 12-28 (343)
86 PF05667 DUF812: Protein of un 93.4 23 0.0005 42.8 34.1 36 536-573 538-573 (594)
87 PRK03918 chromosome segregatio 93.3 28 0.00061 43.5 67.7 8 94-101 38-45 (880)
88 PHA02562 46 endonuclease subun 93.2 22 0.00048 41.9 37.0 19 262-280 175-193 (562)
89 COG1340 Uncharacterized archae 92.8 18 0.00039 39.8 36.5 36 472-507 159-194 (294)
90 KOG4360 Uncharacterized coiled 92.6 4.3 9.2E-05 47.3 16.4 110 264-373 169-280 (596)
91 COG1340 Uncharacterized archae 92.4 20 0.00043 39.5 35.3 28 474-501 203-230 (294)
92 PF06160 EzrA: Septation ring 92.3 31 0.00067 41.4 50.4 21 424-444 215-235 (560)
93 KOG4673 Transcription factor T 92.1 34 0.00074 41.5 55.2 98 328-432 404-503 (961)
94 TIGR03017 EpsF chain length de 92.1 26 0.00057 40.1 24.6 79 213-291 128-208 (444)
95 PF09726 Macoilin: Transmembra 92.1 38 0.00082 41.8 31.7 25 532-556 625-649 (697)
96 PF09787 Golgin_A5: Golgin sub 91.9 32 0.0007 40.8 30.4 19 263-281 118-136 (511)
97 PF10168 Nup88: Nuclear pore c 91.9 15 0.00033 45.3 21.2 57 307-363 553-609 (717)
98 PHA02562 46 endonuclease subun 91.7 33 0.00072 40.5 36.4 18 93-110 41-58 (562)
99 PRK03918 chromosome segregatio 91.7 44 0.00096 41.8 72.3 15 263-277 171-185 (880)
100 PF05911 DUF869: Plant protein 91.6 44 0.00096 41.6 29.0 136 263-414 19-159 (769)
101 PF04849 HAP1_N: HAP1 N-termin 91.5 26 0.00057 38.8 29.6 138 350-502 163-300 (306)
102 TIGR03185 DNA_S_dndD DNA sulfu 91.4 41 0.0009 41.0 38.3 10 270-279 184-193 (650)
103 TIGR03007 pepcterm_ChnLen poly 91.3 34 0.00075 39.9 27.6 78 213-290 118-197 (498)
104 KOG0946 ER-Golgi vesicle-tethe 90.6 52 0.0011 40.8 34.4 34 466-499 801-834 (970)
105 PF15070 GOLGA2L5: Putative go 90.6 49 0.0011 40.3 36.1 30 694-723 479-511 (617)
106 KOG0964 Structural maintenance 90.5 59 0.0013 41.1 40.9 72 539-614 449-520 (1200)
107 COG5059 KIP1 Kinesin-like prot 90.4 0.064 1.4E-06 63.8 -0.8 81 104-191 486-566 (568)
108 COG5185 HEC1 Protein involved 90.3 42 0.00091 39.1 36.1 19 395-413 409-427 (622)
109 PF12325 TMF_TATA_bd: TATA ele 90.3 17 0.00036 35.1 15.5 44 259-311 14-57 (120)
110 KOG4643 Uncharacterized coiled 89.9 66 0.0014 40.8 48.7 89 224-332 246-335 (1195)
111 PF06705 SF-assemblin: SF-asse 89.3 34 0.00073 36.5 33.8 67 579-645 150-223 (247)
112 KOG0980 Actin-binding protein 89.2 69 0.0015 40.1 50.1 24 622-645 794-817 (980)
113 KOG0963 Transcription factor/C 88.8 62 0.0014 39.0 35.4 17 259-275 64-80 (629)
114 PF15619 Lebercilin: Ciliary p 88.7 33 0.00071 35.7 25.9 19 263-281 14-32 (194)
115 PF09730 BicD: Microtubule-ass 88.3 75 0.0016 39.3 44.9 58 303-360 32-89 (717)
116 PF01540 Lipoprotein_7: Adhesi 87.8 45 0.00097 36.2 29.6 121 437-562 176-296 (353)
117 KOG0804 Cytoplasmic Zn-finger 87.7 32 0.0007 39.8 17.8 14 197-210 209-222 (493)
118 TIGR01005 eps_transp_fam exopo 87.6 82 0.0018 39.0 24.6 75 215-289 153-229 (754)
119 KOG0804 Cytoplasmic Zn-finger 87.4 37 0.00081 39.3 18.0 12 123-134 148-159 (493)
120 PF08614 ATG16: Autophagy prot 87.4 6.2 0.00013 40.6 11.3 23 263-285 69-91 (194)
121 smart00787 Spc7 Spc7 kinetocho 87.3 54 0.0012 36.6 20.3 7 183-189 51-57 (312)
122 KOG1937 Uncharacterized conser 87.2 65 0.0014 37.4 35.7 44 169-218 159-202 (521)
123 COG3883 Uncharacterized protei 87.1 50 0.0011 36.0 25.4 47 311-357 51-97 (265)
124 TIGR01005 eps_transp_fam exopo 86.5 48 0.001 41.0 20.3 18 175-192 79-96 (754)
125 smart00787 Spc7 Spc7 kinetocho 85.9 64 0.0014 36.0 19.3 51 364-414 207-257 (312)
126 PF05911 DUF869: Plant protein 85.8 41 0.00088 41.9 18.7 88 342-429 619-706 (769)
127 KOG0996 Structural maintenance 85.7 1.2E+02 0.0027 39.2 62.2 46 202-247 250-299 (1293)
128 PF09755 DUF2046: Uncharacteri 85.6 65 0.0014 35.9 33.5 21 263-283 29-49 (310)
129 PF08614 ATG16: Autophagy prot 85.5 14 0.00031 38.0 12.8 25 405-432 160-184 (194)
130 KOG1853 LIS1-interacting prote 85.0 61 0.0013 35.0 21.2 69 356-424 100-168 (333)
131 PF07464 ApoLp-III: Apolipopho 84.5 24 0.00052 35.5 13.4 97 456-552 48-148 (155)
132 COG4942 Membrane-bound metallo 84.4 88 0.0019 36.3 32.8 51 327-377 53-103 (420)
133 KOG0018 Structural maintenance 84.1 1.4E+02 0.003 38.4 32.5 10 778-787 894-903 (1141)
134 PF13949 ALIX_LYPXL_bnd: ALIX 83.9 68 0.0015 34.7 30.3 32 437-468 202-233 (296)
135 PLN02939 transferase, transfer 83.6 1.4E+02 0.0031 38.2 24.7 193 266-479 199-402 (977)
136 PF15254 CCDC14: Coiled-coil d 83.4 1.3E+02 0.0028 37.4 22.2 36 675-710 816-856 (861)
137 KOG1899 LAR transmembrane tyro 82.5 1.2E+02 0.0027 36.7 20.9 29 302-330 136-164 (861)
138 KOG2129 Uncharacterized conser 82.5 1E+02 0.0022 35.6 24.0 42 385-429 182-224 (552)
139 PRK09039 hypothetical protein; 82.4 92 0.002 35.1 24.2 51 304-354 45-95 (343)
140 PF14662 CCDC155: Coiled-coil 82.4 67 0.0014 33.4 27.8 22 345-366 65-86 (193)
141 KOG0964 Structural maintenance 82.3 1.6E+02 0.0034 37.6 44.2 109 525-646 393-501 (1200)
142 PF08317 Spc7: Spc7 kinetochor 82.2 90 0.0019 34.8 22.8 9 182-190 55-63 (325)
143 PF07926 TPR_MLP1_2: TPR/MLP1/ 82.2 50 0.0011 31.9 20.4 57 392-448 62-118 (132)
144 TIGR01843 type_I_hlyD type I s 82.2 93 0.002 35.0 23.8 20 262-281 82-101 (423)
145 PF01576 Myosin_tail_1: Myosin 81.9 0.44 9.4E-06 59.6 0.0 12 640-651 491-502 (859)
146 KOG0018 Structural maintenance 81.6 1.7E+02 0.0037 37.6 36.0 44 208-251 88-131 (1141)
147 COG4372 Uncharacterized protei 80.7 1.1E+02 0.0024 35.0 39.9 16 178-193 7-22 (499)
148 PF15619 Lebercilin: Ciliary p 80.6 77 0.0017 33.0 26.8 15 486-500 172-186 (194)
149 KOG0946 ER-Golgi vesicle-tethe 80.2 1.7E+02 0.0036 36.7 31.9 8 193-200 522-529 (970)
150 KOG0933 Structural maintenance 80.0 1.9E+02 0.004 37.1 47.4 13 243-255 633-645 (1174)
151 PF06705 SF-assemblin: SF-asse 80.0 89 0.0019 33.4 35.9 22 392-413 88-109 (247)
152 PF10168 Nup88: Nuclear pore c 79.4 1.7E+02 0.0037 36.4 23.7 8 206-213 446-453 (717)
153 PF14942 Muted: Organelle biog 79.3 37 0.0008 33.8 12.4 105 602-706 19-143 (145)
154 PF13851 GAS: Growth-arrest sp 79.2 86 0.0019 32.7 24.9 26 335-360 57-82 (201)
155 KOG0612 Rho-associated, coiled 79.1 2.1E+02 0.0046 37.3 54.3 15 299-313 466-480 (1317)
156 PF15450 DUF4631: Domain of un 79.0 1.5E+02 0.0032 35.3 51.8 33 635-667 373-405 (531)
157 PF12128 DUF3584: Protein of u 78.4 2.3E+02 0.0051 37.3 68.4 20 693-712 772-791 (1201)
158 PF10186 Atg14: UV radiation r 78.3 1E+02 0.0022 33.0 20.4 18 263-280 22-39 (302)
159 PF10481 CENP-F_N: Cenp-F N-te 77.8 98 0.0021 33.9 15.7 12 402-413 115-126 (307)
160 KOG0250 DNA repair protein RAD 77.7 2.2E+02 0.0048 36.7 65.1 31 705-735 866-896 (1074)
161 PF04108 APG17: Autophagy prot 77.7 1.4E+02 0.0031 34.4 45.7 29 526-554 245-273 (412)
162 PF04111 APG6: Autophagy prote 77.2 55 0.0012 36.5 14.5 24 337-360 61-84 (314)
163 PF11932 DUF3450: Protein of u 77.1 95 0.0021 33.2 15.9 67 334-400 50-116 (251)
164 PF05557 MAD: Mitotic checkpoi 77.0 2 4.3E-05 52.8 3.5 17 760-776 511-527 (722)
165 KOG0976 Rho/Rac1-interacting s 77.0 2E+02 0.0044 35.9 51.9 34 605-639 439-472 (1265)
166 PF15290 Syntaphilin: Golgi-lo 76.9 96 0.0021 34.1 15.4 29 352-380 122-150 (305)
167 PF01576 Myosin_tail_1: Myosin 76.3 0.83 1.8E-05 57.2 0.0 38 688-725 598-635 (859)
168 PRK10361 DNA recombination pro 76.2 1.7E+02 0.0037 34.6 27.2 53 451-503 145-197 (475)
169 KOG0962 DNA repair protein RAD 75.7 2.8E+02 0.006 36.7 52.8 26 717-752 1116-1141(1294)
170 PLN03229 acetyl-coenzyme A car 75.5 2.2E+02 0.0047 35.5 24.5 20 264-283 432-451 (762)
171 PLN03188 kinesin-12 family pro 75.5 2.7E+02 0.0059 36.6 28.2 32 395-426 1154-1186(1320)
172 PF12252 SidE: Dot/Icm substra 75.5 2.5E+02 0.0055 36.2 35.8 73 417-492 1245-1319(1439)
173 PF10481 CENP-F_N: Cenp-F N-te 74.8 1.4E+02 0.003 32.8 17.2 25 478-502 162-186 (307)
174 PF04849 HAP1_N: HAP1 N-termin 74.7 1.5E+02 0.0032 33.1 21.9 13 232-244 72-84 (306)
175 PF00769 ERM: Ezrin/radixin/mo 73.8 1.3E+02 0.0029 32.3 18.0 14 367-380 81-94 (246)
176 PF14662 CCDC155: Coiled-coil 73.5 1.2E+02 0.0026 31.6 27.1 49 308-356 11-59 (193)
177 PRK10884 SH3 domain-containing 73.0 62 0.0014 34.0 12.8 23 259-281 91-113 (206)
178 PF05010 TACC: Transforming ac 72.9 1.3E+02 0.0028 31.7 29.7 30 392-421 79-108 (207)
179 PF10473 CENP-F_leu_zip: Leuci 72.5 1.1E+02 0.0023 30.5 21.0 11 305-315 24-34 (140)
180 COG4026 Uncharacterized protei 72.3 1.4E+02 0.0031 31.8 18.5 36 337-372 139-174 (290)
181 PF06008 Laminin_I: Laminin Do 72.2 1.5E+02 0.0032 32.0 32.3 18 263-280 19-36 (264)
182 PF06008 Laminin_I: Laminin Do 71.4 1.5E+02 0.0033 31.8 32.4 23 390-412 88-110 (264)
183 PRK10869 recombination and rep 71.3 2.4E+02 0.0051 34.0 26.2 25 479-503 307-331 (553)
184 KOG0999 Microtubule-associated 70.8 2.4E+02 0.0052 33.9 49.2 66 260-328 7-73 (772)
185 KOG0979 Structural maintenance 70.8 3.1E+02 0.0068 35.2 35.4 287 296-585 627-923 (1072)
186 PF06160 EzrA: Septation ring 70.2 2.5E+02 0.0054 33.8 55.4 18 264-281 21-38 (560)
187 PF05557 MAD: Mitotic checkpoi 70.0 62 0.0013 40.0 14.0 23 262-284 258-280 (722)
188 TIGR00634 recN DNA repair prot 69.6 2.5E+02 0.0055 33.7 28.4 9 95-103 38-46 (563)
189 TIGR01843 type_I_hlyD type I s 69.3 2E+02 0.0043 32.3 23.3 12 267-278 80-91 (423)
190 PF12325 TMF_TATA_bd: TATA ele 68.6 1.2E+02 0.0025 29.4 15.3 37 311-347 22-58 (120)
191 PRK10929 putative mechanosensi 68.5 3.8E+02 0.0082 35.2 32.5 21 297-317 179-199 (1109)
192 KOG4360 Uncharacterized coiled 68.2 2.6E+02 0.0056 33.3 17.1 24 262-285 160-183 (596)
193 TIGR00634 recN DNA repair prot 68.1 2.7E+02 0.0059 33.4 27.6 9 473-481 303-311 (563)
194 PF15035 Rootletin: Ciliary ro 67.6 1.6E+02 0.0034 30.5 20.9 23 393-415 99-121 (182)
195 PF13949 ALIX_LYPXL_bnd: ALIX 67.3 1.9E+02 0.004 31.3 30.3 20 412-431 150-169 (296)
196 PF08647 BRE1: BRE1 E3 ubiquit 66.8 1.1E+02 0.0023 28.2 13.0 25 363-387 61-85 (96)
197 KOG1003 Actin filament-coating 65.7 1.8E+02 0.0039 30.5 23.6 68 304-371 59-126 (205)
198 TIGR03185 DNA_S_dndD DNA sulfu 65.7 3.2E+02 0.007 33.4 41.5 16 39-54 6-22 (650)
199 PF10498 IFT57: Intra-flagella 65.3 2.1E+02 0.0046 32.6 15.8 57 318-374 265-321 (359)
200 PF06785 UPF0242: Uncharacteri 64.7 2.5E+02 0.0054 31.8 18.8 20 392-411 165-184 (401)
201 KOG0980 Actin-binding protein 64.4 3.9E+02 0.0084 33.9 50.1 35 723-757 739-773 (980)
202 PF09738 DUF2051: Double stran 64.0 1.7E+02 0.0036 32.7 14.4 89 316-418 81-169 (302)
203 PF13870 DUF4201: Domain of un 63.8 1.7E+02 0.0037 29.5 22.2 96 285-387 36-131 (177)
204 PRK11281 hypothetical protein; 63.3 4.7E+02 0.01 34.4 39.7 30 701-730 517-548 (1113)
205 PF07794 DUF1633: Protein of u 63.2 1E+02 0.0022 36.2 12.7 140 204-357 511-656 (790)
206 PRK09841 cryptic autophosphory 62.8 2.5E+02 0.0054 34.9 17.2 77 213-289 224-302 (726)
207 PF05478 Prominin: Prominin; 62.4 4.1E+02 0.0089 33.5 27.1 20 495-514 224-243 (806)
208 COG2433 Uncharacterized conser 62.2 1.8E+02 0.0039 35.3 14.7 86 319-415 422-507 (652)
209 KOG0962 DNA repair protein RAD 62.1 5.1E+02 0.011 34.4 50.8 103 612-727 1082-1194(1294)
210 PF07464 ApoLp-III: Apolipopho 61.2 1E+02 0.0022 31.0 11.1 23 527-549 101-123 (155)
211 KOG4403 Cell surface glycoprot 61.1 3.2E+02 0.007 31.9 17.7 38 462-499 381-418 (575)
212 COG4026 Uncharacterized protei 61.1 1E+02 0.0022 32.8 11.2 51 319-369 135-185 (290)
213 PF10473 CENP-F_leu_zip: Leuci 61.0 1.8E+02 0.0039 28.9 21.1 71 293-363 5-75 (140)
214 PF09789 DUF2353: Uncharacteri 60.9 2.8E+02 0.0062 31.2 25.0 41 378-418 75-115 (319)
215 KOG1937 Uncharacterized conser 60.3 3.4E+02 0.0074 31.9 34.1 25 473-497 412-436 (521)
216 PF09738 DUF2051: Double stran 60.0 1.3E+02 0.0028 33.6 12.6 32 349-380 142-173 (302)
217 PF14915 CCDC144C: CCDC144C pr 59.9 2.8E+02 0.0062 30.8 36.8 18 266-283 4-21 (305)
218 KOG1962 B-cell receptor-associ 59.1 1.1E+02 0.0024 32.5 11.2 46 197-251 24-70 (216)
219 PF04048 Sec8_exocyst: Sec8 ex 58.5 1.6E+02 0.0035 28.8 11.9 82 476-569 38-119 (142)
220 TIGR02680 conserved hypothetic 58.4 6E+02 0.013 34.1 37.2 18 264-281 233-250 (1353)
221 KOG4403 Cell surface glycoprot 57.8 3.7E+02 0.0079 31.5 18.1 20 371-390 309-328 (575)
222 PRK11519 tyrosine kinase; Prov 57.2 4.3E+02 0.0093 32.8 17.9 74 215-288 226-301 (719)
223 KOG4809 Rab6 GTPase-interactin 56.9 4.2E+02 0.0092 31.9 32.0 73 297-369 337-409 (654)
224 KOG3091 Nuclear pore complex, 55.5 4.2E+02 0.0092 31.5 17.1 14 195-208 228-241 (508)
225 PF05622 HOOK: HOOK protein; 55.3 3.9 8.5E-05 50.2 0.0 28 80-107 128-155 (713)
226 TIGR03007 pepcterm_ChnLen poly 54.8 4.1E+02 0.0088 31.1 21.5 13 178-190 78-90 (498)
227 COG3524 KpsE Capsule polysacch 53.8 3.6E+02 0.0079 30.2 14.7 95 168-326 149-244 (372)
228 PF04102 SlyX: SlyX; InterPro 53.8 68 0.0015 27.7 7.4 48 304-351 3-50 (69)
229 COG2433 Uncharacterized conser 53.8 2.4E+02 0.0051 34.3 13.9 74 307-380 424-500 (652)
230 PF13870 DUF4201: Domain of un 53.5 2.5E+02 0.0055 28.3 22.5 21 393-413 81-101 (177)
231 PF04740 LXG: LXG domain of WX 53.1 2.7E+02 0.0058 28.4 22.7 20 475-494 103-122 (204)
232 TIGR01541 tape_meas_lam_C phag 52.9 3.8E+02 0.0083 30.2 29.0 70 476-545 117-186 (332)
233 PRK02119 hypothetical protein; 52.5 91 0.002 27.4 8.0 48 302-349 6-53 (73)
234 PRK10869 recombination and rep 51.5 5.1E+02 0.011 31.2 28.0 6 97-102 40-45 (553)
235 PF15066 CAGE1: Cancer-associa 51.4 4.8E+02 0.01 30.9 29.0 12 39-50 95-106 (527)
236 PF10212 TTKRSYEDQ: Predicted 51.4 5E+02 0.011 31.1 16.9 16 393-408 498-513 (518)
237 PF09789 DUF2353: Uncharacteri 51.3 4E+02 0.0087 30.0 26.8 14 371-384 126-139 (319)
238 PF04912 Dynamitin: Dynamitin 51.3 4.2E+02 0.0092 30.2 28.1 24 260-283 93-116 (388)
239 PF10498 IFT57: Intra-flagella 51.1 4.3E+02 0.0092 30.2 17.5 33 392-424 297-329 (359)
240 PF14643 DUF4455: Domain of un 50.9 4.8E+02 0.01 30.7 57.5 191 487-705 262-453 (473)
241 PRK04406 hypothetical protein; 50.0 1.3E+02 0.0028 26.7 8.6 46 303-348 9-54 (75)
242 PRK01156 chromosome segregatio 49.7 6.5E+02 0.014 31.9 63.8 9 93-101 37-45 (895)
243 PF05701 WEMBL: Weak chloropla 49.2 5.4E+02 0.012 30.8 56.5 22 468-489 169-190 (522)
244 PRK12704 phosphodiesterase; Pr 48.8 5.5E+02 0.012 30.8 22.5 9 622-630 364-372 (520)
245 PRK10929 putative mechanosensi 48.8 7.7E+02 0.017 32.5 41.0 17 263-279 74-90 (1109)
246 PRK00295 hypothetical protein; 48.7 1.3E+02 0.0029 26.0 8.3 45 305-349 5-49 (68)
247 KOG4438 Centromere-associated 47.7 5.2E+02 0.011 30.2 38.8 32 528-559 325-356 (446)
248 KOG1962 B-cell receptor-associ 47.7 1.6E+02 0.0034 31.4 10.3 15 175-189 43-57 (216)
249 PF15030 DUF4527: Protein of u 47.6 4E+02 0.0087 28.9 16.0 79 303-381 21-99 (277)
250 PF05384 DegS: Sensor protein 47.6 3.2E+02 0.0069 27.7 21.3 41 332-372 26-66 (159)
251 PRK15422 septal ring assembly 46.6 2.2E+02 0.0048 25.6 10.7 7 405-411 69-75 (79)
252 KOG1853 LIS1-interacting prote 46.6 4.2E+02 0.0092 28.9 24.4 22 465-486 151-172 (333)
253 PRK04325 hypothetical protein; 46.4 1.3E+02 0.0029 26.4 8.1 47 303-349 7-53 (74)
254 PF08317 Spc7: Spc7 kinetochor 46.2 4.6E+02 0.01 29.2 27.7 16 419-434 132-147 (325)
255 PF09755 DUF2046: Uncharacteri 46.2 4.7E+02 0.01 29.3 35.8 23 539-561 225-247 (310)
256 KOG1916 Nuclear protein, conta 45.7 7.8E+02 0.017 31.7 26.4 25 591-615 991-1015(1283)
257 cd07671 F-BAR_PSTPIP1 The F-BA 45.2 4.2E+02 0.0091 28.5 25.4 84 603-687 119-202 (242)
258 PF12777 MT: Microtubule-bindi 45.2 1.1E+02 0.0023 34.5 9.3 12 179-190 87-98 (344)
259 PF12329 TMF_DNA_bd: TATA elem 44.8 2.2E+02 0.0047 25.1 10.5 6 319-324 12-17 (74)
260 PF07111 HCR: Alpha helical co 44.7 7.1E+02 0.015 31.0 54.4 39 474-512 474-512 (739)
261 PRK02793 phi X174 lysis protei 44.3 1.5E+02 0.0032 26.1 8.0 47 303-349 6-52 (72)
262 PRK00736 hypothetical protein; 44.2 1.5E+02 0.0033 25.6 8.0 45 305-349 5-49 (68)
263 PF09304 Cortex-I_coil: Cortex 44.2 2.9E+02 0.0063 26.3 15.6 51 314-364 18-68 (107)
264 KOG4302 Microtubule-associated 43.7 7.3E+02 0.016 30.8 34.2 23 263-285 63-85 (660)
265 PF06818 Fez1: Fez1; InterPro 43.5 4.2E+02 0.0091 28.0 22.8 91 268-367 10-100 (202)
266 PRK15422 septal ring assembly 43.2 2.5E+02 0.0054 25.3 10.5 10 304-313 17-26 (79)
267 TIGR01069 mutS2 MutS2 family p 43.2 6.7E+02 0.014 31.6 16.5 8 194-201 352-359 (771)
268 PF11559 ADIP: Afadin- and alp 43.2 3.3E+02 0.0071 26.7 17.5 11 174-184 5-15 (151)
269 PF08826 DMPK_coil: DMPK coile 42.9 2.2E+02 0.0047 24.4 9.9 22 337-358 15-36 (61)
270 TIGR03017 EpsF chain length de 42.8 5.7E+02 0.012 29.3 22.9 16 176-191 75-90 (444)
271 TIGR01010 BexC_CtrB_KpsE polys 42.7 5.3E+02 0.011 28.9 16.8 60 262-328 178-237 (362)
272 PF14643 DUF4455: Domain of un 42.5 6.3E+02 0.014 29.7 51.9 187 523-720 206-405 (473)
273 PF04740 LXG: LXG domain of WX 41.8 4E+02 0.0086 27.2 21.3 19 450-468 21-39 (204)
274 KOG0240 Kinesin (SMY1 subfamil 41.3 7.3E+02 0.016 30.1 23.5 35 478-512 477-511 (607)
275 PF09602 PhaP_Bmeg: Polyhydrox 41.1 4.1E+02 0.0089 27.2 17.4 95 624-718 56-155 (165)
276 PF15294 Leu_zip: Leucine zipp 41.0 5.4E+02 0.012 28.5 18.7 45 303-347 130-174 (278)
277 PF15397 DUF4618: Domain of un 40.8 5.2E+02 0.011 28.3 31.8 27 320-346 7-33 (258)
278 TIGR03752 conj_TIGR03752 integ 40.5 3.1E+02 0.0068 32.4 12.1 19 262-280 60-78 (472)
279 PF07851 TMPIT: TMPIT-like pro 40.1 3.2E+02 0.0069 31.0 11.7 54 435-488 28-85 (330)
280 PF15294 Leu_zip: Leucine zipp 39.9 5.6E+02 0.012 28.4 15.6 23 479-501 254-276 (278)
281 KOG3091 Nuclear pore complex, 39.6 7.3E+02 0.016 29.6 16.8 56 322-377 337-392 (508)
282 KOG0288 WD40 repeat protein Ti 38.7 7E+02 0.015 29.1 17.7 27 341-367 42-68 (459)
283 PF03904 DUF334: Domain of unk 37.3 5.5E+02 0.012 27.6 19.9 69 475-545 117-187 (230)
284 PF02403 Seryl_tRNA_N: Seryl-t 37.2 3.3E+02 0.0072 25.0 11.6 11 300-310 38-48 (108)
285 PF06156 DUF972: Protein of un 37.2 2.1E+02 0.0045 27.1 8.4 45 302-346 5-49 (107)
286 cd09238 V_Alix_like_1 Protein- 37.0 6.5E+02 0.014 28.3 26.3 28 438-465 250-277 (339)
287 PRK00846 hypothetical protein; 36.9 2.4E+02 0.0053 25.2 8.3 44 303-346 11-54 (77)
288 TIGR03319 YmdA_YtgF conserved 36.4 8.2E+02 0.018 29.3 23.2 10 622-631 358-367 (514)
289 COG4477 EzrA Negative regulato 36.4 8.5E+02 0.018 29.4 41.3 81 472-553 383-464 (570)
290 PF04394 DUF536: Protein of un 36.2 1.5E+02 0.0032 24.0 6.1 40 312-351 3-42 (45)
291 COG1283 NptA Na+/phosphate sym 36.0 8.6E+02 0.019 29.4 18.0 149 465-615 325-482 (533)
292 KOG1899 LAR transmembrane tyro 35.7 9.3E+02 0.02 29.7 21.9 37 303-339 109-145 (861)
293 PF03915 AIP3: Actin interacti 35.6 7.9E+02 0.017 28.8 17.2 22 424-445 165-186 (424)
294 cd07663 BAR_SNX5 The Bin/Amphi 35.0 5.9E+02 0.013 27.2 25.6 139 576-727 77-215 (218)
295 cd07672 F-BAR_PSTPIP2 The F-BA 34.8 6E+02 0.013 27.2 24.2 84 602-686 119-202 (240)
296 cd07624 BAR_SNX7_30 The Bin/Am 34.8 5.3E+02 0.012 26.6 25.6 44 506-549 69-112 (200)
297 TIGR03545 conserved hypothetic 34.1 4E+02 0.0086 32.3 12.1 10 404-413 263-272 (555)
298 PF07106 TBPIP: Tat binding pr 34.1 4.3E+02 0.0094 26.4 10.8 17 306-322 80-96 (169)
299 KOG0249 LAR-interacting protei 33.8 1E+03 0.023 29.8 20.0 217 267-491 48-271 (916)
300 PF12329 TMF_DNA_bd: TATA elem 33.5 3.3E+02 0.0072 23.9 10.3 10 306-315 13-22 (74)
301 PF15397 DUF4618: Domain of un 33.1 6.9E+02 0.015 27.4 29.4 34 466-499 115-148 (258)
302 KOG2264 Exostosin EXT1L [Signa 33.0 2.6E+02 0.0057 33.6 9.9 18 348-365 122-139 (907)
303 PF12795 MscS_porin: Mechanose 32.9 6.2E+02 0.013 26.8 22.4 22 262-283 46-67 (240)
304 PF12777 MT: Microtubule-bindi 32.8 1.8E+02 0.0039 32.7 8.6 6 405-410 286-291 (344)
305 KOG2751 Beclin-like protein [S 32.1 9E+02 0.019 28.4 14.6 18 260-277 142-159 (447)
306 PF08581 Tup_N: Tup N-terminal 32.0 3.8E+02 0.0082 24.1 10.9 55 314-368 6-60 (79)
307 cd09237 V_ScBro1_like Protein- 31.9 7.8E+02 0.017 27.7 29.6 27 439-465 261-287 (356)
308 PF03962 Mnd1: Mnd1 family; I 31.8 5.9E+02 0.013 26.3 14.6 28 304-331 68-95 (188)
309 PF15066 CAGE1: Cancer-associa 31.6 9.4E+02 0.02 28.6 28.6 9 557-565 513-521 (527)
310 PF00769 ERM: Ezrin/radixin/mo 31.4 6.9E+02 0.015 26.9 17.7 16 301-316 8-23 (246)
311 PF05266 DUF724: Protein of un 31.2 6.2E+02 0.013 26.3 12.3 83 290-372 102-184 (190)
312 KOG2220 Predicted signal trans 30.8 1.2E+03 0.025 29.3 19.1 56 540-596 625-680 (714)
313 PRK12704 phosphodiesterase; Pr 30.8 1E+03 0.022 28.6 24.0 9 643-651 363-371 (520)
314 KOG2391 Vacuolar sorting prote 30.4 8.6E+02 0.019 27.7 14.4 23 452-474 259-281 (365)
315 PF07989 Microtub_assoc: Micro 30.4 3.9E+02 0.0084 23.7 8.8 21 262-282 8-28 (75)
316 PF04065 Not3: Not1 N-terminal 29.6 7.4E+02 0.016 26.7 19.4 91 391-504 10-100 (233)
317 PF05622 HOOK: HOOK protein; 29.2 18 0.00039 44.5 0.0 16 402-417 297-312 (713)
318 TIGR03545 conserved hypothetic 29.0 1.1E+03 0.024 28.6 15.0 14 621-634 526-539 (555)
319 COG0598 CorA Mg2+ and Co2+ tra 29.0 8.3E+02 0.018 27.1 15.3 31 470-500 179-209 (322)
320 PF11932 DUF3450: Protein of u 28.8 7.4E+02 0.016 26.4 19.5 32 456-487 108-140 (251)
321 PF08172 CASP_C: CASP C termin 28.8 3.6E+02 0.0078 29.2 9.7 22 392-413 110-131 (248)
322 TIGR02231 conserved hypothetic 28.7 6.1E+02 0.013 30.1 12.6 23 260-282 70-92 (525)
323 KOG4637 Adaptor for phosphoino 28.5 9.7E+02 0.021 27.7 17.8 145 335-487 134-278 (464)
324 PF14197 Cep57_CLD_2: Centroso 28.4 4E+02 0.0087 23.2 10.0 20 266-285 3-22 (69)
325 TIGR02132 phaR_Bmeg polyhydrox 28.1 7E+02 0.015 25.9 13.8 84 347-437 72-155 (189)
326 PRK10361 DNA recombination pro 27.9 1.1E+03 0.024 28.1 26.5 40 407-446 85-124 (475)
327 KOG4286 Dystrophin-like protei 27.7 1.3E+03 0.029 29.1 16.9 52 318-369 198-249 (966)
328 COG1382 GimC Prefoldin, chaper 27.6 5.8E+02 0.012 24.8 13.8 13 334-346 28-40 (119)
329 TIGR03319 YmdA_YtgF conserved 27.6 1.1E+03 0.024 28.2 23.9 10 518-527 273-282 (514)
330 KOG4438 Centromere-associated 27.5 1.1E+03 0.023 27.8 35.1 35 297-331 172-206 (446)
331 PF09602 PhaP_Bmeg: Polyhydrox 27.4 6.9E+02 0.015 25.6 22.2 24 620-643 137-160 (165)
332 TIGR01541 tape_meas_lam_C phag 27.3 9.4E+02 0.02 27.2 30.1 48 493-547 163-210 (332)
333 PF09731 Mitofilin: Mitochondr 27.2 1.1E+03 0.025 28.1 31.2 10 47-56 28-37 (582)
334 KOG2751 Beclin-like protein [S 27.1 1.1E+03 0.023 27.8 14.8 6 197-202 84-89 (447)
335 KOG1655 Protein involved in va 27.0 7.7E+02 0.017 26.0 11.9 111 260-370 32-149 (218)
336 PLN03229 acetyl-coenzyme A car 27.0 1.4E+03 0.029 28.9 22.9 47 520-567 614-666 (762)
337 PF05278 PEARLI-4: Arabidopsis 26.9 8.8E+02 0.019 26.7 13.9 104 307-411 161-264 (269)
338 COG3074 Uncharacterized protei 26.6 4.5E+02 0.0098 23.2 10.5 18 343-360 49-66 (79)
339 KOG2150 CCR4-NOT transcription 26.3 1.2E+03 0.027 28.2 16.8 12 264-275 4-15 (575)
340 PF09325 Vps5: Vps5 C terminal 26.2 7.4E+02 0.016 25.6 23.2 230 462-724 1-232 (236)
341 KOG4572 Predicted DNA-binding 26.1 1.5E+03 0.032 29.0 37.0 421 248-718 950-1392(1424)
342 PF10805 DUF2730: Protein of u 26.1 5.5E+02 0.012 24.0 9.6 21 307-327 37-57 (106)
343 PRK00106 hypothetical protein; 26.1 1.2E+03 0.027 28.1 23.3 19 703-721 430-450 (535)
344 PF10212 TTKRSYEDQ: Predicted 25.9 1.2E+03 0.026 28.0 17.3 16 176-191 215-230 (518)
345 PF15070 GOLGA2L5: Putative go 25.7 1.3E+03 0.029 28.3 48.1 16 489-504 206-221 (617)
346 PRK10803 tol-pal system protei 25.7 4.5E+02 0.0098 28.5 9.9 31 338-368 59-89 (263)
347 PF04582 Reo_sigmaC: Reovirus 25.7 1.2E+02 0.0027 34.0 5.6 31 337-367 60-90 (326)
348 PRK00409 recombination and DNA 25.5 1.5E+03 0.031 28.7 16.8 7 194-200 357-363 (782)
349 PF08172 CASP_C: CASP C termin 25.5 8.9E+02 0.019 26.3 12.0 13 401-413 105-117 (248)
350 cd07667 BAR_SNX30 The Bin/Amph 25.5 8.9E+02 0.019 26.2 26.9 19 341-359 108-126 (240)
351 PF05010 TACC: Transforming ac 25.4 8.2E+02 0.018 25.9 30.1 22 554-575 179-200 (207)
352 KOG0239 Kinesin (KAR3 subfamil 25.3 1.4E+03 0.03 28.5 19.6 16 712-727 553-568 (670)
353 PF11172 DUF2959: Protein of u 25.2 8.3E+02 0.018 25.8 20.9 72 473-547 121-192 (201)
354 cd08915 V_Alix_like Protein-in 25.2 9.8E+02 0.021 26.6 34.3 29 437-465 252-280 (342)
355 PRK13169 DNA replication intia 25.0 4.3E+02 0.0094 25.2 8.3 36 303-338 6-41 (110)
356 KOG4302 Microtubule-associated 24.9 1.4E+03 0.031 28.4 34.2 95 471-565 160-262 (660)
357 PRK00409 recombination and DNA 24.8 1.5E+03 0.032 28.6 17.8 27 213-241 324-350 (782)
358 COG0419 SbcC ATPase involved i 24.7 1.5E+03 0.034 28.8 70.2 39 93-132 39-79 (908)
359 PF08580 KAR9: Yeast cortical 24.6 1.4E+03 0.031 28.4 33.9 34 412-445 114-147 (683)
360 PRK15178 Vi polysaccharide exp 24.5 1.2E+03 0.025 27.6 13.3 49 271-326 259-307 (434)
361 KOG2180 Late Golgi protein sor 24.5 1.5E+03 0.032 28.5 18.6 23 696-718 377-399 (793)
362 PF04582 Reo_sigmaC: Reovirus 24.3 1.5E+02 0.0033 33.3 6.0 62 337-398 74-135 (326)
363 PF12001 DUF3496: Domain of un 24.3 6.4E+02 0.014 24.2 10.5 39 319-357 29-67 (111)
364 PF07851 TMPIT: TMPIT-like pro 24.3 1.1E+03 0.023 26.9 12.5 8 579-586 311-318 (330)
365 PF03999 MAP65_ASE1: Microtubu 24.0 2.7E+02 0.0059 33.9 8.6 357 263-634 35-406 (619)
366 PF04880 NUDE_C: NUDE protein, 23.5 1.3E+02 0.0027 30.8 4.8 20 323-342 4-23 (166)
367 PF05957 DUF883: Bacterial pro 23.5 5.5E+02 0.012 23.1 10.9 34 433-466 36-69 (94)
368 PF02994 Transposase_22: L1 tr 23.2 2.5E+02 0.0053 32.1 7.6 10 402-411 150-159 (370)
369 PF13874 Nup54: Nucleoporin co 22.9 5.9E+02 0.013 24.9 9.2 18 306-323 45-62 (141)
370 PF09403 FadA: Adhesion protei 22.8 7.2E+02 0.016 24.3 14.8 67 474-557 55-121 (126)
371 PHA03332 membrane glycoprotein 22.6 1.9E+03 0.04 29.0 18.9 45 435-479 919-963 (1328)
372 PF07889 DUF1664: Protein of u 22.6 7.3E+02 0.016 24.3 12.9 20 394-413 101-120 (126)
373 PF02403 Seryl_tRNA_N: Seryl-t 22.2 6.1E+02 0.013 23.2 9.4 10 319-328 43-52 (108)
374 PF06005 DUF904: Protein of un 22.2 5.5E+02 0.012 22.6 11.2 14 400-413 57-70 (72)
375 PF15188 CCDC-167: Coiled-coil 21.8 4.3E+02 0.0094 24.1 7.3 55 264-318 8-63 (85)
376 PF03962 Mnd1: Mnd1 family; I 21.7 9E+02 0.02 25.0 14.3 42 450-491 114-155 (188)
377 COG0497 RecN ATPase involved i 21.2 1.5E+03 0.033 27.5 28.0 217 291-512 146-387 (557)
378 KOG4460 Nuclear pore complex, 21.2 1.5E+03 0.033 27.5 18.4 154 307-463 576-733 (741)
379 cd07651 F-BAR_PombeCdc15_like 21.0 9.8E+02 0.021 25.1 25.5 78 603-685 120-197 (236)
380 PF12004 DUF3498: Domain of un 20.7 33 0.00072 40.5 0.0 18 40-57 101-118 (495)
381 PF04949 Transcrip_act: Transc 20.6 8.9E+02 0.019 24.5 16.3 111 301-411 37-148 (159)
382 PRK10803 tol-pal system protei 20.6 6.2E+02 0.014 27.4 9.7 47 306-352 41-87 (263)
383 PF03915 AIP3: Actin interacti 20.6 1.4E+03 0.031 26.8 19.2 16 267-282 150-165 (424)
384 cd07647 F-BAR_PSTPIP The F-BAR 20.2 1E+03 0.022 25.1 24.6 79 603-682 119-197 (239)
385 KOG3691 Exocyst complex subuni 20.1 1.9E+03 0.042 28.2 19.1 86 473-570 45-130 (982)
386 PF02183 HALZ: Homeobox associ 20.1 4.3E+02 0.0094 21.2 6.2 19 321-339 14-32 (45)
No 1
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.5e-124 Score=1092.39 Aligned_cols=782 Identities=53% Similarity=0.754 Sum_probs=745.2
Q ss_pred CCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhcCCeEEEEEEEEEEEcCceeecCCCCCCC-cccccCCCCCeeEEecCC
Q 003781 1 MEGGARKKNGEFPSDAGVIPRAVKQIFDILEAQHAEYSMKVTFLELYNEEISDLLALEETS-KFVDDKSKKPIALMEDGK 79 (796)
Q Consensus 1 MtG~~~t~~g~~~~~~GIIPRal~~LF~~le~~~~~~sV~vS~lEIYNE~V~DLL~~~~~~-~~~~~~~~~~l~i~ed~~ 79 (796)
|+|+.+..+|..|+++|||||++.+||+.++..+.+|+|+|||+|+|||+|+|||+|.... +.......+++. +++
T Consensus 146 MeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~~EYsvKVSfLELYNEEl~DLLa~~~~~~~~~~~k~~~~~~---~~k 222 (1041)
T KOG0243|consen 146 MEGGERKKNGELPSEAGIIPRALRQIFDTLEAQGAEYSVKVSFLELYNEELTDLLASEDTSDKKLRIKDDSTIV---DGK 222 (1041)
T ss_pred eecCcccccCCCCccCCcchHHHHHHHHHHHhcCCeEEEEEEehhhhhHHHHHhcCCccccccccccccCCccc---CCc
Confidence 6666666677899999999999999999999999999999999999999999999998753 222222222332 679
Q ss_pred CCeEecccEEEEecCHHHHHHHHHhchhcccccccccCCCCCCCceEEEEEEEEeecCCCCCcceEEeeeccccCCCCcc
Q 003781 80 GGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSEN 159 (796)
Q Consensus 80 ~gv~V~gL~ev~V~s~~e~~~lL~~G~~~R~~asT~~N~~SSRSHsIFtI~v~~~~~~~~~~~~i~~skL~lVDLAGSEr 159 (796)
|||+|+||.+++|+++.|++.+|.+|..+|++|+|.||++|||||+||+|+|++++.++.|++++++||||||||||||+
T Consensus 223 ggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~geelvK~GKLNLVDLAGSEN 302 (1041)
T KOG0243|consen 223 GGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEELVKIGKLNLVDLAGSEN 302 (1041)
T ss_pred CcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcchhhHhhcccceeecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCcceeeeeecCCCCCChHhHHHHHH
Q 003781 160 ISRSGAREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLD 239 (796)
Q Consensus 160 ~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqDSLGGnskT~mIatVSPs~~~~eETlsTL~ 239 (796)
++++||.+.|++|||.||+||+||||||+||+++++|||||||||||||||||||++||||||||||+..+++||+|||+
T Consensus 303 I~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLE 382 (1041)
T KOG0243|consen 303 ISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLE 382 (1041)
T ss_pred ccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 240 YAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERMELESESKDK 319 (796)
Q Consensus 240 fA~RAk~Ikn~p~vN~~~~~~~lik~l~~EI~~Lk~el~~~r~k~gv~~~~~~~~~~e~e~k~~~~~ie~le~~l~~~~~ 319 (796)
||.|||+|+|+|++|+.++++.++++|+.||++||.+|.++|+|||+|++.++|.+++.+++.+.++|++++.+++..++
T Consensus 383 YA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~ 462 (1041)
T KOG0243|consen 383 YAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEK 462 (1041)
T ss_pred HHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 320 QLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELE 399 (796)
Q Consensus 320 ~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~L~~le~~l~~~~~~l~e~~~~i~~l~~~e~~l~~~~~~l~~~l~ 399 (796)
++..+++.|..+......|.+++.+++.+|.+....+..+++++.+++..|++++++|+.+..+|..+..++..++..++
T Consensus 463 ~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~ 542 (1041)
T KOG0243|consen 463 QLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLE 542 (1041)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 003781 400 NAASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVSTKAEATEELRGR 479 (796)
Q Consensus 400 ~~~~~v~~L~~kl~rk~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 479 (796)
.+..++.+|+.+++++.++...|+..+..|..++...+..+...+....+++..++..|...+.+|++.+....+.++..
T Consensus 543 ~s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~~~~~~~~~~v~~~~s~~~~~l~~~~~~~~s~~s~~~~~~e~~~t~ 622 (1041)
T KOG0243|consen 543 ESQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQLSENLSTLHGLVASSSSQQISQLTTMLAQMESFLSAKSKATEIMKTK 622 (1041)
T ss_pred HHHHHHHHHHHHhhhhhccccccHHHHHHHhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHhhhhccchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhHHhHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 480 LGKLKAMYGSGIKALDGIAGELDGNSRSTFGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQSSLYKQEEKLTAYAQQQ 559 (796)
Q Consensus 480 ~~~~k~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 559 (796)
+...++.++++++.++.+...++..+.+.++.+.+..-+|..+++.++.+....+..+++++.+.++.|++.+..|+.|+
T Consensus 623 ~~~~r~~~~~~~e~~q~~~~~~k~~~~s~l~~i~s~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~q~~~~~l~~~qe 702 (1041)
T KOG0243|consen 623 ISKDRDILSEVLESLQQLQEVLKKDSESCLEVINSSITSSINELESMLETIANTADDLLQNISSRLSNQQEILSLFANQE 702 (1041)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHhHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 003781 560 REAHSRAVENARSVSKVTVNFFKTLDMHASNLTKIVEEAQTVNDQKLFEFEKKFEESAANEERQLLEKVAELLASSNARK 639 (796)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~q 639 (796)
+..+..+....+.++..+..||+++..++.++.......+......+++|++.|+. .+.+.++++++|+.++.++.+++
T Consensus 703 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~e~~~~~~q~~ 781 (1041)
T KOG0243|consen 703 LQELVLSQDSAQELSELTSTFFQTLDNQAEKLTNLFSEANISLSQKLSSFQKKFES-IAEDEKQLVEDIKELLSSHDQRN 781 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHhhhHHh-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 88899999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhhhhHhHHHhhhhhhhhhhhHHHhHHHHHHHhhhhhhhhhhhHhhhhhcHHHHHHHHHHhhhhhh
Q 003781 640 KQLVQMAVQDLRESASSRTSQLQKEMSTMQDSTFSVKAEWSAHMNKTESHYLEDTSAVENGKKDLEVVLQNCLKQAKMGA 719 (796)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (796)
.++|..++..++..+......+...++.|+.+....|..|..+..+++++|.++..+++...+.|+..+..|...++++.
T Consensus 782 ~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 861 (1041)
T KOG0243|consen 782 NELLDIALQTLRSAVNSRESNLTESVSVMQNLSDDLKTIWQTLGKQNENHHNEVLSAIEEKQQAMKSVLKELLENAESQV 861 (1041)
T ss_pred HHHHHHHHHHHHHhhccchhHHHHhhHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHhhhhhhHHHHHHHHHhhhhhHHHHhHhHH-hHHHHHHHHHHHHHHHHHHHHHHhcccccce
Q 003781 720 QQWRTAQESLLNLEKNNVAAVDSIVRYEWKPIRTYMLGFL-LLCQLRSKMQMLQTAIFLHLLTIHCNLTKTH 790 (796)
Q Consensus 720 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (796)
.+|+.++.++.++...+++.++++++..-+.+..+-+.|. .++..-..+..+---| .|-|-.+.+.|
T Consensus 862 ~~~~~~~~~lk~~~~~~~~~~~~l~~~~~~~~~k~~~e~~s~~~~~~~~~~~~~~~i----~t~~~~~~~~~ 929 (1041)
T KOG0243|consen 862 DECKEAIESLKSLESNHVATLDSLVRGVSEQNKKLQDEFLSLLNSKLNSFDVLTNSI----VTPHSILLKLD 929 (1041)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHhhhhhhhHHhhHHHHHHHhHHHhhhhhccccc----ccccccccccc
Confidence 9999999999999999999999999999999999998888 6666655555443333 34454444443
No 2
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=9.3e-69 Score=617.88 Aligned_cols=315 Identities=37% Similarity=0.543 Sum_probs=272.5
Q ss_pred CCCCCCCCCC-CCCCCCcHHHHHHHHHHHHhhc---CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEec
Q 003781 2 EGGARKKNGE-FPSDAGVIPRAVKQIFDILEAQ---HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMED 77 (796)
Q Consensus 2 tG~~~t~~g~-~~~~~GIIPRal~~LF~~le~~---~~~~sV~vS~lEIYNE~V~DLL~~~~~~~~~~~~~~~~l~i~ed 77 (796)
+|+++|..|- .+.++|||||+|++||.++... +..|+|.|||+|||||.|+|||+.. +++.+|+++|+
T Consensus 99 SGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p--------~~kg~LRVREH 170 (1221)
T KOG0245|consen 99 SGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAP--------KSKGGLRVREH 170 (1221)
T ss_pred CCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCC--------CCCCCceeecc
Confidence 4777777774 4689999999999999999764 4589999999999999999999831 24678999999
Q ss_pred CCCCeEecccEEEEecCHHHHHHHHHhchhcccccccccCCCCCCCceEEEEEEEEeecCCCC-CcceEEeeeccccCCC
Q 003781 78 GKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEG-EEMIKCGKLNLVDLAG 156 (796)
Q Consensus 78 ~~~gv~V~gL~ev~V~s~~e~~~lL~~G~~~R~~asT~~N~~SSRSHsIFtI~v~~~~~~~~~-~~~i~~skL~lVDLAG 156 (796)
|..|+||.+|+...|+|+.|+..+|..|++.|++++|.||+.|||||+||+|++.++.....+ -...++|||+||||||
T Consensus 171 P~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~SKIsLVDLAG 250 (1221)
T KOG0245|consen 171 PILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKVSKISLVDLAG 250 (1221)
T ss_pred CccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceeeeeeeEEeccC
Confidence 999999999999999999999999999999999999999999999999999999987655443 3567899999999999
Q ss_pred CccccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCC-------CCCCCCCCccccccccccCCCcceeeeeecCCCCC
Q 003781 157 SENISRSGAREGRAREAGEINKSLLTLGRVINALVEHS-------GHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIH 229 (796)
Q Consensus 157 SEr~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~-------~hIPYRdSKLTrLLqDSLGGnskT~mIatVSPs~~ 229 (796)
|||+..+|+.|+|+|||.+|||||+|||+||+||++.+ .+||||||.||+||+++||||+||.|||++||++.
T Consensus 251 SERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaMIAAlSPAdi 330 (1221)
T KOG0245|consen 251 SERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAMIAALSPADI 330 (1221)
T ss_pred cccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhhhhhccChhhc
Confidence 99999999999999999999999999999999999843 49999999999999999999999999999999999
Q ss_pred ChHhHHHHHHHHHHhccCccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCCC-cCCccchHHHHHHHHHHHHHHH
Q 003781 230 CLEETLSTLDYAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREKNGI-YIPRDRYLQEEAEKKAMAEKIE 308 (796)
Q Consensus 230 ~~eETlsTL~fA~RAk~Ikn~p~vN~~~~~~~lik~l~~EI~~Lk~el~~~r~k~gv-~~~~~~~~~~e~e~k~~~~~ie 308 (796)
||+||||||+||.|||+|+|+|+||+++ +..+|++|++||.+||..+.......-. ..++... .....++
T Consensus 331 NyeETLSTLRYAdRAK~Iv~~avVNEdp-naKLIRELreEv~rLksll~~~~~~~~~~~~~p~~~--------~~~~~~e 401 (1221)
T KOG0245|consen 331 NYEETLSTLRYADRAKQIVNNAVVNEDP-NAKLIRELREEVARLKSLLRAQGLGDIAVEGSPSAL--------LSQPEIE 401 (1221)
T ss_pred ChHHHHHHHHHhhHhhhhhccceeCCCc-cHHHHHHHHHHHHHHHHHHhccccccccccCCcccc--------cccccHH
Confidence 9999999999999999999999999996 7899999999999999977654321110 0111110 1234566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 309 RMELESESKDKQLMELQELYNSQLL 333 (796)
Q Consensus 309 ~le~~l~~~~~~l~~l~~~~~~~~~ 333 (796)
.+...|+..++.+.++++.|++...
T Consensus 402 ~~~~~L~E~Ek~mael~etW~EKl~ 426 (1221)
T KOG0245|consen 402 ELRERLQETEKIMAELNETWEEKLR 426 (1221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788888888888888875443
No 3
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-68 Score=606.34 Aligned_cols=272 Identities=48% Similarity=0.684 Sum_probs=255.0
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc--CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecCC
Q 003781 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ--HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGK 79 (796)
Q Consensus 2 tG~~~t~~g~~~~~~GIIPRal~~LF~~le~~--~~~~sV~vS~lEIYNE~V~DLL~~~~~~~~~~~~~~~~l~i~ed~~ 79 (796)
+|+++|..|..+...|||||++.+||..|+.. ...|+|+|||+|||||+|+|||+|.+ ++.+.|+++++
T Consensus 97 sGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~---------~~~l~lre~p~ 167 (574)
T KOG4280|consen 97 SGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVN---------PKGLELREDPK 167 (574)
T ss_pred CCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccC---------cCCceeeEcCC
Confidence 58888888877899999999999999999875 34799999999999999999999865 26799999999
Q ss_pred CCeEecccEEEEecCHHHHHHHHHhchhcccccccccCCCCCCCceEEEEEEEEeecCCCCCcceEEeeeccccCCCCcc
Q 003781 80 GGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSEN 159 (796)
Q Consensus 80 ~gv~V~gL~ev~V~s~~e~~~lL~~G~~~R~~asT~~N~~SSRSHsIFtI~v~~~~~~~~~~~~i~~skL~lVDLAGSEr 159 (796)
.||||+||+++.|.+++++..+|..|..+|.+++|.||..|||||+||+|+|+.......|...++.|||||||||||||
T Consensus 168 ~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvDLagsEr 247 (574)
T KOG4280|consen 168 CGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVDLAGSER 247 (574)
T ss_pred CceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceeeeeeccchhh
Confidence 99999999999999999999999999999999999999999999999999999855555566778999999999999999
Q ss_pred ccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCCC-CCCCCCCccccccccccCCCcceeeeeecCCCCCChHhHHHHH
Q 003781 160 ISRSGAREGRAREAGEINKSLLTLGRVINALVEHSG-HVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTL 238 (796)
Q Consensus 160 ~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~~-hIPYRdSKLTrLLqDSLGGnskT~mIatVSPs~~~~eETlsTL 238 (796)
..++|+.|+|++||++||+||++||+||+||+++.. ||||||||||+||||||||||||+|||||||+..|++||+|||
T Consensus 248 ~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ETlsTL 327 (574)
T KOG4280|consen 248 QSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEETLSTL 327 (574)
T ss_pred hcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHHHHHH
Confidence 999999999999999999999999999999999876 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCccccccccccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 003781 239 DYAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREK 283 (796)
Q Consensus 239 ~fA~RAk~Ikn~p~vN~~~~~~~lik~l~~EI~~Lk~el~~~r~k 283 (796)
+||+|||.|+|+|.||.++ +...++.|+.||.+||.++......
T Consensus 328 rfA~Rak~I~nk~~ined~-~~~~~~~lq~ei~~Lk~~l~~~~~~ 371 (574)
T KOG4280|consen 328 RFAQRAKAIKNKPVINEDP-KDALLRELQEEIERLKKELDPGGSP 371 (574)
T ss_pred HHHHHHHHhhccccccCCc-chhhHHHHHHHHHHHHHhhccccCc
Confidence 9999999999999999996 6788999999999999999766543
No 4
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.2e-62 Score=544.56 Aligned_cols=260 Identities=42% Similarity=0.628 Sum_probs=236.3
Q ss_pred CCCCCCCCCC--CCCCCCcHHHHHHHHHHHHhhcCC--eEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEec
Q 003781 2 EGGARKKNGE--FPSDAGVIPRAVKQIFDILEAQHA--EYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMED 77 (796)
Q Consensus 2 tG~~~t~~g~--~~~~~GIIPRal~~LF~~le~~~~--~~sV~vS~lEIYNE~V~DLL~~~~~~~~~~~~~~~~l~i~ed 77 (796)
+|++++..|. .+...|||||++++||+.|...+. +|.|+|||+|||+|+++|||+|. +.++.+++|
T Consensus 94 sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~----------k~nlsvheD 163 (607)
T KOG0240|consen 94 SGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPE----------KTNLSVHED 163 (607)
T ss_pred CCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcc----------cCCceeecc
Confidence 4666666553 346779999999999999987644 99999999999999999999864 468999999
Q ss_pred CCCCeEecccEEEEecCHHHHHHHHHhchhcccccccccCCCCCCCceEEEEEEEEeecCCCCCcceEEeeeccccCCCC
Q 003781 78 GKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGS 157 (796)
Q Consensus 78 ~~~gv~V~gL~ev~V~s~~e~~~lL~~G~~~R~~asT~~N~~SSRSHsIFtI~v~~~~~~~~~~~~i~~skL~lVDLAGS 157 (796)
.+.++||+|+++..|.++++++.+++.|..+|+++.|.||.+|||||+||+|+|.+..... ...++|||.|||||||
T Consensus 164 K~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~---~~~~~gkLyLVDLaGS 240 (607)
T KOG0240|consen 164 KNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVED---KRKLSGKLYLVDLAGS 240 (607)
T ss_pred cCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccc---hhhccccEEEEEcccc
Confidence 9999999999999999999999999999999999999999999999999999998764332 2357899999999999
Q ss_pred ccccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhC-CCCCCCCCCccccccccccCCCcceeeeeecCCCCCChHhHHH
Q 003781 158 ENISRSGAREGRAREAGEINKSLLTLGRVINALVEH-SGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLS 236 (796)
Q Consensus 158 Er~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~-~~hIPYRdSKLTrLLqDSLGGnskT~mIatVSPs~~~~eETls 236 (796)
|+++++|+.|.-+.||.+||+||.|||+||+||+++ ..|||||||||||||||||||||+|.+|.||||+..+-.||.+
T Consensus 241 EkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~S 320 (607)
T KOG0240|consen 241 EKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKS 320 (607)
T ss_pred cccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCcccccccccc
Confidence 999999999999999999999999999999999998 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCccccccccccchHHHHHHHHHHHHHHH
Q 003781 237 TLDYAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLK 274 (796)
Q Consensus 237 TL~fA~RAk~Ikn~p~vN~~~~~~~lik~l~~EI~~Lk 274 (796)
||+|+.|||.|+|.+.+|.........++|..+.+.+.
T Consensus 321 Tl~fg~rak~ikN~v~~n~e~~~e~~~r~~e~~kd~~~ 358 (607)
T KOG0240|consen 321 TLRFGNRAKTIKNTVWVNLELTAEEWKRKLEKKKDKNV 358 (607)
T ss_pred chhhccccccccchhhhhhHhhHHHHHHHHHHHHhHHH
Confidence 99999999999999999998877777777766544443
No 5
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=2.6e-61 Score=570.64 Aligned_cols=278 Identities=40% Similarity=0.643 Sum_probs=240.9
Q ss_pred CCCCCCCCCCC---------CCCCCcHHHHHHHHHHHHhhc-------CCeEEEEEEEEEEEcCceeecCCCCCCCcccc
Q 003781 2 EGGARKKNGEF---------PSDAGVIPRAVKQIFDILEAQ-------HAEYSMKVTFLELYNEEISDLLALEETSKFVD 65 (796)
Q Consensus 2 tG~~~t~~g~~---------~~~~GIIPRal~~LF~~le~~-------~~~~sV~vS~lEIYNE~V~DLL~~~~~~~~~~ 65 (796)
+|+++|.+|.. +.++|||||++++||..+... ...|.|+|||+|||||.|+|||+|..
T Consensus 177 SGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~~------ 250 (1320)
T PLN03188 177 SGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQ------ 250 (1320)
T ss_pred CCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceecccccc------
Confidence 57777777752 467999999999999998642 34799999999999999999998643
Q ss_pred cCCCCCeeEEecCCCCeEecccEEEEecCHHHHHHHHHhchhcccccccccCCCCCCCceEEEEEEEEeecC-CCCCcce
Q 003781 66 DKSKKPIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECT-PEGEEMI 144 (796)
Q Consensus 66 ~~~~~~l~i~ed~~~gv~V~gL~ev~V~s~~e~~~lL~~G~~~R~~asT~~N~~SSRSHsIFtI~v~~~~~~-~~~~~~i 144 (796)
+.+.|++|+.+|++|.||+++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|+|...... ..+...+
T Consensus 251 ----k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~ 326 (1320)
T PLN03188 251 ----KNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSF 326 (1320)
T ss_pred ----CCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcce
Confidence 46899999999999999999999999999999999999999999999999999999999999865432 2344556
Q ss_pred EEeeeccccCCCCccccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhh-----CCCCCCCCCCccccccccccCCCccee
Q 003781 145 KCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVE-----HSGHVPYRDSKLTRLLRDSLGGKTKTC 219 (796)
Q Consensus 145 ~~skL~lVDLAGSEr~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~-----~~~hIPYRdSKLTrLLqDSLGGnskT~ 219 (796)
+.|+|+|||||||||++++++.|.+++||++||+||++||+||++|++ +..||||||||||+||||+|||||+|+
T Consensus 327 r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTv 406 (1320)
T PLN03188 327 KTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLA 406 (1320)
T ss_pred EEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEE
Confidence 889999999999999999999999999999999999999999999986 346999999999999999999999999
Q ss_pred eeeecCCCCCChHhHHHHHHHHHHhccCccccccccccchH-----HHHHHHHHHHHHHHHHHHHHHhhCCCcCC
Q 003781 220 IIATVSPSIHCLEETLSTLDYAHRAKNIKNKPEINQKMMKS-----AMIKDLYSEIDRLKQEVYAAREKNGIYIP 289 (796)
Q Consensus 220 mIatVSPs~~~~eETlsTL~fA~RAk~Ikn~p~vN~~~~~~-----~lik~l~~EI~~Lk~el~~~r~k~gv~~~ 289 (796)
|||||||+..+++||++||+||.|||+|+|+|.+|..+.+. .+|++|+.||.+||........+||.|..
T Consensus 407 MIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL~rLK~~~~~p~~~n~~y~t 481 (1320)
T PLN03188 407 MVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQRVKANGNNPTNPNVAYST 481 (1320)
T ss_pred EEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccc
Confidence 99999999999999999999999999999999999875332 24555555555555554444444566654
No 6
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.5e-60 Score=554.21 Aligned_cols=268 Identities=46% Similarity=0.711 Sum_probs=247.7
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc-CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecCCC
Q 003781 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ-HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGKG 80 (796)
Q Consensus 2 tG~~~t~~g~~~~~~GIIPRal~~LF~~le~~-~~~~sV~vS~lEIYNE~V~DLL~~~~~~~~~~~~~~~~l~i~ed~~~ 80 (796)
+|+++|..|. +.+|||||+++.+||+.|... +..|.|+|||+|||||.|+|||+|.+ .++.|+||+.+
T Consensus 98 SGKTyTM~G~-~~~PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~----------~~L~irED~~~ 166 (675)
T KOG0242|consen 98 SGKTYTMSGS-EDDPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDG----------GDLRLREDSEG 166 (675)
T ss_pred CCCceEEecc-CCCCCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCC----------CCceEeEcCCC
Confidence 4556555665 788999999999999999875 45899999999999999999999765 35999999999
Q ss_pred CeEecccEEEEecCHHHHHHHHHhchhcccccccccCCCCCCCceEEEEEEEEeecCCCCCcceEEeeeccccCCCCccc
Q 003781 81 GVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENI 160 (796)
Q Consensus 81 gv~V~gL~ev~V~s~~e~~~lL~~G~~~R~~asT~~N~~SSRSHsIFtI~v~~~~~~~~~~~~i~~skL~lVDLAGSEr~ 160 (796)
|++|.||+++.|.|++++..+|..|..+|+++.|.+|..|||||+||+|+|........ . +.|+|+|||||||||.
T Consensus 167 gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~---~-~~s~L~lIDLAGSERa 242 (675)
T KOG0242|consen 167 GIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS---S-RVSKLNLIDLAGSERA 242 (675)
T ss_pred CEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc---c-hhheehhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999987654433 1 6799999999999999
Q ss_pred cCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhC--CCCCCCCCCccccccccccCCCcceeeeeecCCCCCChHhHHHHH
Q 003781 161 SRSGAREGRAREAGEINKSLLTLGRVINALVEH--SGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTL 238 (796)
Q Consensus 161 ~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~--~~hIPYRdSKLTrLLqDSLGGnskT~mIatVSPs~~~~eETlsTL 238 (796)
.++++.|.|++||++||+||++||+||++|+++ ..|||||||||||||||||||||+|+|||||+|+..+++||.+||
T Consensus 243 s~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL 322 (675)
T KOG0242|consen 243 SRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTL 322 (675)
T ss_pred hhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHH
Confidence 999999999999999999999999999999997 569999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhC
Q 003781 239 DYAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREKN 284 (796)
Q Consensus 239 ~fA~RAk~Ikn~p~vN~~~~~~~lik~l~~EI~~Lk~el~~~r~k~ 284 (796)
.||+|||+|++++.+|..+....+++.+..+|..|+.++..++.+.
T Consensus 323 ~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~ 368 (675)
T KOG0242|consen 323 KFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERLKKKL 368 (675)
T ss_pred HHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999998888899888899999999998776543
No 7
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.9e-58 Score=523.23 Aligned_cols=268 Identities=39% Similarity=0.633 Sum_probs=245.1
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc---CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecC
Q 003781 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ---HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDG 78 (796)
Q Consensus 2 tG~~~t~~g~~~~~~GIIPRal~~LF~~le~~---~~~~sV~vS~lEIYNE~V~DLL~~~~~~~~~~~~~~~~l~i~ed~ 78 (796)
+|++++..|. ...+|||||.+..||..|... +..|.|.|||+|||||.+||||+|.. .++.++++++.
T Consensus 105 sGKsYsmmGt-~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdPk~--------ssqtlkVrehs 175 (1714)
T KOG0241|consen 105 SGKSYSMMGT-AEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDPKG--------SSQTLKVREHS 175 (1714)
T ss_pred CCceeEeecc-CCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCCCC--------CcceeEEeecc
Confidence 4666666664 889999999999999999753 45899999999999999999999876 34689999999
Q ss_pred CCCeEecccEEEEecCHHHHHHHHHhchhcccccccccCCCCCCCceEEEEEEEEeecCCC-CCcceEEeeeccccCCCC
Q 003781 79 KGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPE-GEEMIKCGKLNLVDLAGS 157 (796)
Q Consensus 79 ~~gv~V~gL~ev~V~s~~e~~~lL~~G~~~R~~asT~~N~~SSRSHsIFtI~v~~~~~~~~-~~~~i~~skL~lVDLAGS 157 (796)
--|+||.||++..|.|++|+-.++..|+++|++++|.||..|||||+||.|.|.+.-.+.. |-..-+.|||.|||||||
T Consensus 176 vlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~SgeKvsklslVDLAgs 255 (1714)
T KOG0241|consen 176 VLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGEKVSKLSLVDLAGS 255 (1714)
T ss_pred cccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchhheeeeeEEEeccc
Confidence 9999999999999999999999999999999999999999999999999999987644432 223346799999999999
Q ss_pred ccccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhC------CCCCCCCCCccccccccccCCCcceeeeeecCCCCCCh
Q 003781 158 ENISRSGAREGRAREAGEINKSLLTLGRVINALVEH------SGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCL 231 (796)
Q Consensus 158 Er~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~------~~hIPYRdSKLTrLLqDSLGGnskT~mIatVSPs~~~~ 231 (796)
||..++|+.|.|++|+++||+||++||.||.||+++ ..+||||||.||+||+|+|||||+|+||+||||+..||
T Consensus 256 erasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdny 335 (1714)
T KOG0241|consen 256 ERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNY 335 (1714)
T ss_pred cccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCceeEEEEEecccccch
Confidence 999999999999999999999999999999999985 35899999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhccCccccccccccchHHHHHHHHHHHHHHHHHHHH
Q 003781 232 EETLSTLDYAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYA 279 (796)
Q Consensus 232 eETlsTL~fA~RAk~Ikn~p~vN~~~~~~~lik~l~~EI~~Lk~el~~ 279 (796)
+||+|||+||.|||.|+|...||.++ +...|++++.|++.|+.+|..
T Consensus 336 eeTlStLRYadrAkrIvN~avvNedp-narvirElReEve~lr~qL~~ 382 (1714)
T KOG0241|consen 336 EETLSTLRYADRAKRIVNHAVVNEDP-NARVIRELREEVEKLREQLEQ 382 (1714)
T ss_pred HHHHHHHHHHHHHHHhhccccccCCc-hHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999996 778899999999999998865
No 8
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=5.1e-57 Score=496.35 Aligned_cols=248 Identities=68% Similarity=0.978 Sum_probs=232.3
Q ss_pred CCCCCCCCCCC----------CCCCCcHHHHHHHHHHHHhhcCCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCC
Q 003781 2 EGGARKKNGEF----------PSDAGVIPRAVKQIFDILEAQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKP 71 (796)
Q Consensus 2 tG~~~t~~g~~----------~~~~GIIPRal~~LF~~le~~~~~~sV~vS~lEIYNE~V~DLL~~~~~~~~~~~~~~~~ 71 (796)
+|++++..|.. +..+|||||++.+||+.+...+..|+|+|||+|||||.|+|||+|.. ..+++
T Consensus 93 SGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~-------~~~~~ 165 (352)
T cd01364 93 TGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQNTEYSVKVSYLELYNEELFDLLSSES-------DLNKP 165 (352)
T ss_pred CCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhccceeEEEEEEEEeeCCeeeeCCCCcc-------ccCcc
Confidence 57777777753 45699999999999999998888999999999999999999998753 13567
Q ss_pred eeEEec--CCCCeEecccEEEEecCHHHHHHHHHhchhcccccccccCCCCCCCceEEEEEEEEeecCCCCCcceEEeee
Q 003781 72 IALMED--GKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKL 149 (796)
Q Consensus 72 l~i~ed--~~~gv~V~gL~ev~V~s~~e~~~lL~~G~~~R~~asT~~N~~SSRSHsIFtI~v~~~~~~~~~~~~i~~skL 149 (796)
+.++++ +.+|++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+......++..+..|+|
T Consensus 166 l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~~~~~s~l 245 (352)
T cd01364 166 LRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEELVKIGKL 245 (352)
T ss_pred ceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCccEEEEEE
Confidence 999999 689999999999999999999999999999999999999999999999999999988777677778889999
Q ss_pred ccccCCCCccccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCcceeeeeecCCCCC
Q 003781 150 NLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIH 229 (796)
Q Consensus 150 ~lVDLAGSEr~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqDSLGGnskT~mIatVSPs~~ 229 (796)
+||||||||+.+++++.+.+.+|+..||+||.+|++||.+|+.+..|||||+||||+||+|+|||||+|+||+||||+..
T Consensus 246 ~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~ 325 (352)
T cd01364 246 NLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTKTSIIATISPASI 325 (352)
T ss_pred EEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHhHHHHHHHHHHhccCccccccccc
Q 003781 230 CLEETLSTLDYAHRAKNIKNKPEINQK 256 (796)
Q Consensus 230 ~~eETlsTL~fA~RAk~Ikn~p~vN~~ 256 (796)
+++||++||+||.||++|+|+|.+|++
T Consensus 326 ~~~eTl~TL~~a~~~~~i~n~P~~n~~ 352 (352)
T cd01364 326 NLEETLSTLEYAHRAKNIKNKPEVNQK 352 (352)
T ss_pred cHHHHHHHHHHHHHHhhccCccccCCC
Confidence 999999999999999999999999974
No 9
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=5.2e-57 Score=493.78 Aligned_cols=235 Identities=49% Similarity=0.708 Sum_probs=214.1
Q ss_pred CCCCCCCCCCCC-------CCCCcHHHHHHHHHHHHhhc------CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCC
Q 003781 2 EGGARKKNGEFP-------SDAGVIPRAVKQIFDILEAQ------HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKS 68 (796)
Q Consensus 2 tG~~~t~~g~~~-------~~~GIIPRal~~LF~~le~~------~~~~sV~vS~lEIYNE~V~DLL~~~~~~~~~~~~~ 68 (796)
+|+++|.+|... .++|||||++++||..+... +..|.|+|||+|||||+|+|||+|..
T Consensus 86 SGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~--------- 156 (337)
T cd01373 86 SGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTS--------- 156 (337)
T ss_pred CCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCC---------
Confidence 577777777543 47899999999999988643 34799999999999999999998643
Q ss_pred CCCeeEEecCCCCeEecccEEEEecCHHHHHHHHHhchhcccccccccCCCCCCCceEEEEEEEEeecCCCCCcceEEee
Q 003781 69 KKPIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGK 148 (796)
Q Consensus 69 ~~~l~i~ed~~~gv~V~gL~ev~V~s~~e~~~lL~~G~~~R~~asT~~N~~SSRSHsIFtI~v~~~~~~~~~~~~i~~sk 148 (796)
..+.+++++.+|++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|........ ....+.|+
T Consensus 157 -~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~-~~~~~~s~ 234 (337)
T cd01373 157 -RNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKAS-STNIRTSR 234 (337)
T ss_pred -CCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCC-CCcEEEEE
Confidence 4689999999999999999999999999999999999999999999999999999999999986543332 23467899
Q ss_pred eccccCCCCccccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhh----CCCCCCCCCCccccccccccCCCcceeeeeec
Q 003781 149 LNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVE----HSGHVPYRDSKLTRLLRDSLGGKTKTCIIATV 224 (796)
Q Consensus 149 L~lVDLAGSEr~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~----~~~hIPYRdSKLTrLLqDSLGGnskT~mIatV 224 (796)
|+|||||||||..++++.|.+++|+..||+||++||+||.+|++ +..||||||||||+||+|+|||||+|+|||||
T Consensus 235 l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~v 314 (337)
T cd01373 235 LNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANV 314 (337)
T ss_pred EEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEE
Confidence 99999999999999999999999999999999999999999986 35799999999999999999999999999999
Q ss_pred CCCCCChHhHHHHHHHHHHhccC
Q 003781 225 SPSIHCLEETLSTLDYAHRAKNI 247 (796)
Q Consensus 225 SPs~~~~eETlsTL~fA~RAk~I 247 (796)
||+..+++||++||+||.|||.|
T Consensus 315 sP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 315 SPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred CCCcccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999987
No 10
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=4.5e-57 Score=494.49 Aligned_cols=235 Identities=46% Similarity=0.707 Sum_probs=219.2
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc--CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecCC
Q 003781 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ--HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGK 79 (796)
Q Consensus 2 tG~~~t~~g~~~~~~GIIPRal~~LF~~le~~--~~~~sV~vS~lEIYNE~V~DLL~~~~~~~~~~~~~~~~l~i~ed~~ 79 (796)
+|++++..|. +.++|||||++++||+.++.. +..|.|+|||+|||||.|+|||++. .+++.+++|+.
T Consensus 99 SGKTyTm~G~-~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~----------~~~l~i~ed~~ 167 (338)
T cd01370 99 AGKTHTMLGT-DSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPS----------SGPLELREDPN 167 (338)
T ss_pred CCCeEEEcCC-CCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCC----------CCCceEEEcCC
Confidence 5777777776 588999999999999999875 4689999999999999999999864 25789999999
Q ss_pred CCeEecccEEEEecCHHHHHHHHHhchhcccccccccCCCCCCCceEEEEEEEEeecCCCCCcceEEeeeccccCCCCcc
Q 003781 80 GGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSEN 159 (796)
Q Consensus 80 ~gv~V~gL~ev~V~s~~e~~~lL~~G~~~R~~asT~~N~~SSRSHsIFtI~v~~~~~~~~~~~~i~~skL~lVDLAGSEr 159 (796)
++++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+.............|+|+|||||||||
T Consensus 168 ~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsEr 247 (338)
T cd01370 168 QGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLSLIDLAGSER 247 (338)
T ss_pred CCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCcc
Confidence 99999999999999999999999999999999999999999999999999998876554334557889999999999999
Q ss_pred ccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCC---CCCCCCCCccccccccccCCCcceeeeeecCCCCCChHhHHH
Q 003781 160 ISRSGAREGRAREAGEINKSLLTLGRVINALVEHS---GHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLS 236 (796)
Q Consensus 160 ~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~---~hIPYRdSKLTrLLqDSLGGnskT~mIatVSPs~~~~eETls 236 (796)
..++++.|.+++|+..||+||++|++||.+|+.+. .||||||||||+||+|+|||||+|+||+||||+..+++||++
T Consensus 248 ~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~ 327 (338)
T cd01370 248 ASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHN 327 (338)
T ss_pred ccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHH
Confidence 99999999999999999999999999999999987 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccC
Q 003781 237 TLDYAHRAKNI 247 (796)
Q Consensus 237 TL~fA~RAk~I 247 (796)
||+||.|||+|
T Consensus 328 TL~fa~ra~~I 338 (338)
T cd01370 328 TLKYANRAKNI 338 (338)
T ss_pred HHHHHHHhccC
Confidence 99999999987
No 11
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=8.7e-56 Score=485.59 Aligned_cols=235 Identities=39% Similarity=0.654 Sum_probs=215.2
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhcCCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecCCCC
Q 003781 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGKGG 81 (796)
Q Consensus 2 tG~~~t~~g~~~~~~GIIPRal~~LF~~le~~~~~~sV~vS~lEIYNE~V~DLL~~~~~~~~~~~~~~~~l~i~ed~~~g 81 (796)
+|+++|..|. +.++|||||++++||+.+.. |.|+|||+|||||.|+|||++.+.. ...++++.+++|+.++
T Consensus 100 SGKTyTm~G~-~~~~Gli~r~~~~lF~~~~~----~~v~~S~~EIyne~v~DLL~~~~~~----~~~~~~l~i~ed~~~~ 170 (345)
T cd01368 100 SGKTYTMQGS-PGDGGILPRSLDVIFNSIGG----YSVFVSYVEIYNNYIYDLLEDSPSS----TKKRQSLRLREDHNGN 170 (345)
T ss_pred CCCeEEecCC-CCCCchHHHHHHHHHHHHHh----eeEEEEEEEEeCCEeEeCCCCcccc----ccCCCceEEEECCCCC
Confidence 5777777876 58999999999999999876 9999999999999999999976521 1235689999999999
Q ss_pred eEecccEEEEecCHHHHHHHHHhchhcccccccccCCCCCCCceEEEEEEEEeecCCCC-----CcceEEeeeccccCCC
Q 003781 82 VFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEG-----EEMIKCGKLNLVDLAG 156 (796)
Q Consensus 82 v~V~gL~ev~V~s~~e~~~lL~~G~~~R~~asT~~N~~SSRSHsIFtI~v~~~~~~~~~-----~~~i~~skL~lVDLAG 156 (796)
++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+......+ ...+..|+|+||||||
T Consensus 171 ~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~s~l~~VDLAG 250 (345)
T cd01368 171 MYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDKDQITVSQLSLVDLAG 250 (345)
T ss_pred EEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCCCceEEEEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999876544322 2456789999999999
Q ss_pred CccccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhh------CCCCCCCCCCccccccccccCCCcceeeeeecCCCCCC
Q 003781 157 SENISRSGAREGRAREAGEINKSLLTLGRVINALVE------HSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHC 230 (796)
Q Consensus 157 SEr~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~------~~~hIPYRdSKLTrLLqDSLGGnskT~mIatVSPs~~~ 230 (796)
|||..++++.|.+++|++.||+||++||+||.+|++ +..||||||||||+||+|+|||||+|+||+||||+..+
T Consensus 251 sEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~ 330 (345)
T cd01368 251 SERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASD 330 (345)
T ss_pred ccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhh
Confidence 999999999999999999999999999999999997 46799999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhc
Q 003781 231 LEETLSTLDYAHRAK 245 (796)
Q Consensus 231 ~eETlsTL~fA~RAk 245 (796)
++||++||+||.+|+
T Consensus 331 ~~eTl~tL~fa~~a~ 345 (345)
T cd01368 331 YDETLHVMKFSAIAQ 345 (345)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999985
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=3.3e-55 Score=482.79 Aligned_cols=245 Identities=43% Similarity=0.653 Sum_probs=224.8
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc---CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecC
Q 003781 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ---HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDG 78 (796)
Q Consensus 2 tG~~~t~~g~~~~~~GIIPRal~~LF~~le~~---~~~~sV~vS~lEIYNE~V~DLL~~~~~~~~~~~~~~~~l~i~ed~ 78 (796)
+|+++|.+|. +.++|||||++++||+.+... +..|+|+|||+|||||.|+|||++.. ....++.+++++
T Consensus 100 SGKT~Tm~G~-~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~-------~~~~~l~i~~~~ 171 (356)
T cd01365 100 SGKSYTMMGY-KEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKK-------KNKGNLKVREHP 171 (356)
T ss_pred CCCeEEecCC-CCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCc-------cCCcCceEEECC
Confidence 5788888886 568999999999999999764 35899999999999999999998753 124578999999
Q ss_pred CCCeEecccEEEEecCHHHHHHHHHhchhcccccccccCCCCCCCceEEEEEEEEeecCCC-CCcceEEeeeccccCCCC
Q 003781 79 KGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPE-GEEMIKCGKLNLVDLAGS 157 (796)
Q Consensus 79 ~~gv~V~gL~ev~V~s~~e~~~lL~~G~~~R~~asT~~N~~SSRSHsIFtI~v~~~~~~~~-~~~~i~~skL~lVDLAGS 157 (796)
.+|++|+|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+...... +......|+|+|||||||
T Consensus 172 ~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~~s~l~~VDLAGs 251 (356)
T cd01365 172 VLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKVSKISLVDLAGS 251 (356)
T ss_pred CCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceEEEEEEeeecccc
Confidence 9999999999999999999999999999999999999999999999999999987654432 234567899999999999
Q ss_pred ccccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhC--------CCCCCCCCCccccccccccCCCcceeeeeecCCCCC
Q 003781 158 ENISRSGAREGRAREAGEINKSLLTLGRVINALVEH--------SGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIH 229 (796)
Q Consensus 158 Er~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~--------~~hIPYRdSKLTrLLqDSLGGnskT~mIatVSPs~~ 229 (796)
||..+++..+.+++|+..||+||++||+||.+|+.+ ..||||||||||+||+|+||||++|+||+||||+..
T Consensus 252 Er~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~ 331 (356)
T cd01365 252 ERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADI 331 (356)
T ss_pred cccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcc
Confidence 999999999999999999999999999999999875 479999999999999999999999999999999999
Q ss_pred ChHhHHHHHHHHHHhccCccccccc
Q 003781 230 CLEETLSTLDYAHRAKNIKNKPEIN 254 (796)
Q Consensus 230 ~~eETlsTL~fA~RAk~Ikn~p~vN 254 (796)
+++||++||+||.||++|+|.|++|
T Consensus 332 ~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 332 NYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred cHHHHHHHHHHHHHHhhccCccccC
Confidence 9999999999999999999999986
No 13
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.4e-53 Score=492.53 Aligned_cols=255 Identities=46% Similarity=0.653 Sum_probs=231.4
Q ss_pred CCCcHHHHHHHHHHHHhhc-CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecCCCCeEecccEEEEec
Q 003781 15 DAGVIPRAVKQIFDILEAQ-HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGKGGVFVRGLEEEIVT 93 (796)
Q Consensus 15 ~~GIIPRal~~LF~~le~~-~~~~sV~vS~lEIYNE~V~DLL~~~~~~~~~~~~~~~~l~i~ed~~~gv~V~gL~ev~V~ 93 (796)
+.|||||+++.+|..+... ...|.|.|||+|||+++|+|||.|.. .+.++.+++ ++|++.+.|++++.|.
T Consensus 93 ~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~--------~~~~i~~~e-~~g~it~~glte~tv~ 163 (913)
T KOG0244|consen 93 TVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSR--------LKANIKLRE-PKGEITIRGLTEKTVR 163 (913)
T ss_pred cCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhh--------hhhceeccc-cCCceEEEeehHHHHH
Confidence 3699999999999999865 35899999999999999999998543 234577777 8899999999999999
Q ss_pred CHHHHHHHHHhchhcccccccccCCCCCCCceEEEEEEEEeecCCCCCcceEEeeeccccCCCCccccCCCCchhhHHHH
Q 003781 94 TADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSGAREGRAREA 173 (796)
Q Consensus 94 s~~e~~~lL~~G~~~R~~asT~~N~~SSRSHsIFtI~v~~~~~~~~~~~~i~~skL~lVDLAGSEr~~ks~a~g~r~kEa 173 (796)
+..++...|..|...|++++|.||..|||||+||++.+.+..... .....++||+|||||||||.++++++|.|++||
T Consensus 164 ~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~--~~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEg 241 (913)
T KOG0244|consen 164 MKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLS--KRSSFCSKLHLVDLAGSERVKKTKAEGDRLKEG 241 (913)
T ss_pred HHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhh--ccchhhhhhheeeccccccccccccchhhhhhc
Confidence 999999999999999999999999999999999999997643322 222457999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHhhCCC--CCCCCCCccccccccccCCCcceeeeeecCCCCCChHhHHHHHHHHHHhccCcccc
Q 003781 174 GEINKSLLTLGRVINALVEHSG--HVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNKP 251 (796)
Q Consensus 174 ~~INkSLlaLg~VI~aL~~~~~--hIPYRdSKLTrLLqDSLGGnskT~mIatVSPs~~~~eETlsTL~fA~RAk~Ikn~p 251 (796)
.+||.+|++||+||+||.+... |||||||||||||||+||||++|+|||||||+..|.+||++||+||.||++|+|+|
T Consensus 242 InIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~ 321 (913)
T KOG0244|consen 242 ININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADRAKQIKNKP 321 (913)
T ss_pred cCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhHHHHhcccc
Confidence 9999999999999999998754 99999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 003781 252 EINQKMMKSAMIKDLYSEIDRLKQEVYAAR 281 (796)
Q Consensus 252 ~vN~~~~~~~lik~l~~EI~~Lk~el~~~r 281 (796)
.+|.++ ....+..+..+|+.|+.++...+
T Consensus 322 vvN~d~-~~~~~~~lK~ql~~l~~ell~~~ 350 (913)
T KOG0244|consen 322 VVNQDP-KSFEMLKLKAQLEPLQVELLSKA 350 (913)
T ss_pred cccccH-HHHHHHHHHHHHHHHHHHHHhhc
Confidence 999964 77778888999999999887765
No 14
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=9.7e-54 Score=467.24 Aligned_cols=237 Identities=47% Similarity=0.720 Sum_probs=219.7
Q ss_pred CCCCCCCCCCC--CCCCCcHHHHHHHHHHHHhhc-CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecC
Q 003781 2 EGGARKKNGEF--PSDAGVIPRAVKQIFDILEAQ-HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDG 78 (796)
Q Consensus 2 tG~~~t~~g~~--~~~~GIIPRal~~LF~~le~~-~~~~sV~vS~lEIYNE~V~DLL~~~~~~~~~~~~~~~~l~i~ed~ 78 (796)
+|++++.+|.. +.++|||||++++||+.+... +..|.|+|||+|||||+|+|||++.. .+++.+++++
T Consensus 93 SGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~---------~~~l~i~~~~ 163 (333)
T cd01371 93 TGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQ---------KKKLELKERP 163 (333)
T ss_pred CCCcEeecCCCCcccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCC---------CCceeEEEcC
Confidence 57787777752 358999999999999999765 46899999999999999999998643 3578999999
Q ss_pred CCCeEecccEEEEecCHHHHHHHHHhchhcccccccccCCCCCCCceEEEEEEEEeecCCCCCcceEEeeeccccCCCCc
Q 003781 79 KGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSE 158 (796)
Q Consensus 79 ~~gv~V~gL~ev~V~s~~e~~~lL~~G~~~R~~asT~~N~~SSRSHsIFtI~v~~~~~~~~~~~~i~~skL~lVDLAGSE 158 (796)
.+|++|.|++++.|.|++++..+|..|.++|.+++|.+|..|||||+||+|+|.+......+...+..|+|+||||||||
T Consensus 164 ~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsE 243 (333)
T cd01371 164 DRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDLAGSE 243 (333)
T ss_pred CCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999877655545667789999999999999
Q ss_pred cccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCCC-CCCCCCCccccccccccCCCcceeeeeecCCCCCChHhHHHH
Q 003781 159 NISRSGAREGRAREAGEINKSLLTLGRVINALVEHSG-HVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLST 237 (796)
Q Consensus 159 r~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~~-hIPYRdSKLTrLLqDSLGGnskT~mIatVSPs~~~~eETlsT 237 (796)
|..++++.+.+++|+..||+||.+|++||.+|+++.. |||||+||||+||+|+|||||+|+||+||||...+++||++|
T Consensus 244 r~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eTl~T 323 (333)
T cd01371 244 RQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLST 323 (333)
T ss_pred cccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHH
Confidence 9999999999999999999999999999999999876 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccC
Q 003781 238 LDYAHRAKNI 247 (796)
Q Consensus 238 L~fA~RAk~I 247 (796)
|+||.|||+|
T Consensus 324 L~fa~r~r~I 333 (333)
T cd01371 324 LRYANRAKNI 333 (333)
T ss_pred HHHHHHhhcC
Confidence 9999999987
No 15
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=1.2e-53 Score=463.89 Aligned_cols=228 Identities=36% Similarity=0.602 Sum_probs=214.1
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhcCCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecCCCC
Q 003781 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGKGG 81 (796)
Q Consensus 2 tG~~~t~~g~~~~~~GIIPRal~~LF~~le~~~~~~sV~vS~lEIYNE~V~DLL~~~~~~~~~~~~~~~~l~i~ed~~~g 81 (796)
+|++++..|. +.++|||||++++||+.++.....|.|++||+|||||.|+|||++. ..++.|++++.++
T Consensus 92 SGKTyTm~G~-~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~----------~~~l~i~~~~~~~ 160 (319)
T cd01376 92 AGKTHTMLGD-PNEPGLIPRTLSDLLRMGRKQAWTGAFSMSYYEIYNEKVYDLLEPA----------KKELPIREDKDGN 160 (319)
T ss_pred CCCcEEEeCC-cCccchHHHHHHHHHHHHhhccccceEEEEEEEEECCEeeEccCCC----------CCCceEEEcCCCC
Confidence 5777777776 5699999999999999998877899999999999999999999864 2468899999999
Q ss_pred eEecccEEEEecCHHHHHHHHHhchhcccccccccCCCCCCCceEEEEEEEEeecCCCCCcceEEeeeccccCCCCcccc
Q 003781 82 VFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENIS 161 (796)
Q Consensus 82 v~V~gL~ev~V~s~~e~~~lL~~G~~~R~~asT~~N~~SSRSHsIFtI~v~~~~~~~~~~~~i~~skL~lVDLAGSEr~~ 161 (796)
++|.|++++.|.|++|+..+|..|..+|..++|.+|..|||||+||+|.|.+.... ....|+|+||||||||+..
T Consensus 161 ~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~-----~~~~s~l~~VDLAGsE~~~ 235 (319)
T cd01376 161 ILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN-----IQLEGKLNLIDLAGSEDNR 235 (319)
T ss_pred EEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC-----ceEEEEEEEEECCCCCccc
Confidence 99999999999999999999999999999999999999999999999999865322 2578999999999999999
Q ss_pred CCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCcceeeeeecCCCCCChHhHHHHHHHH
Q 003781 162 RSGAREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYA 241 (796)
Q Consensus 162 ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqDSLGGnskT~mIatVSPs~~~~eETlsTL~fA 241 (796)
++++.|.+++|+..||+||++||+||.+|+.+..||||||||||+||+|+|||||+|+||+||||...+++||++||+||
T Consensus 236 ~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa 315 (319)
T cd01376 236 RTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFA 315 (319)
T ss_pred ccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhc
Q 003781 242 HRAK 245 (796)
Q Consensus 242 ~RAk 245 (796)
+|||
T Consensus 316 ~r~~ 319 (319)
T cd01376 316 SRSK 319 (319)
T ss_pred HhhC
Confidence 9986
No 16
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=1.3e-53 Score=464.28 Aligned_cols=226 Identities=42% Similarity=0.624 Sum_probs=211.2
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhcCCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecCCCC
Q 003781 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGKGG 81 (796)
Q Consensus 2 tG~~~t~~g~~~~~~GIIPRal~~LF~~le~~~~~~sV~vS~lEIYNE~V~DLL~~~~~~~~~~~~~~~~l~i~ed~~~g 81 (796)
+||+++.+|. +.++|||||++++||+.++....+|+|++||+|||||.|+|||++. +++.+++++.++
T Consensus 96 SGKTyTm~G~-~~~~Glipr~~~~lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~-----------~~l~i~~~~~~~ 163 (322)
T cd01367 96 SGKTYTMLGD-ENQEGLYALAARDIFRLLAQPNDDLGVTVSFFEIYGGKLFDLLNDR-----------KRLSVLEDGKGN 163 (322)
T ss_pred CCCceEecCc-CCcCccHHHHHHHHHHHHhccccccEEEEEEEeeecCchhhhccCc-----------cceeEEEcCCCC
Confidence 5777777876 5899999999999999998877899999999999999999999862 468999999999
Q ss_pred eEecccEEEEecCHHHHHHHHHhchhcccccccccCCCCCCCceEEEEEEEEeecCCCCCcceEEeeeccccCCCCcccc
Q 003781 82 VFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENIS 161 (796)
Q Consensus 82 v~V~gL~ev~V~s~~e~~~lL~~G~~~R~~asT~~N~~SSRSHsIFtI~v~~~~~~~~~~~~i~~skL~lVDLAGSEr~~ 161 (796)
++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|.|..... ....|+|+||||||||+..
T Consensus 164 ~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~------~~~~s~l~~vDLAGsE~~~ 237 (322)
T cd01367 164 VQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL------NKLLGKLSFIDLAGSERGA 237 (322)
T ss_pred EEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC------CeeEEEEEEeecCCccccc
Confidence 9999999999999999999999999999999999999999999999999986543 3467999999999999998
Q ss_pred CCC-CchhhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCcceeeeeecCCCCCChHhHHHHHHH
Q 003781 162 RSG-AREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDY 240 (796)
Q Consensus 162 ks~-a~g~r~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqDSLGGnskT~mIatVSPs~~~~eETlsTL~f 240 (796)
.++ ..+.+.+|+..||+||++|++||.+|+.+..||||||||||+||+|+|||||+|+|||||||+..+++||++||+|
T Consensus 238 ~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~f 317 (322)
T cd01367 238 DTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRY 317 (322)
T ss_pred cccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHH
Confidence 876 4688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc
Q 003781 241 AHRAK 245 (796)
Q Consensus 241 A~RAk 245 (796)
|.|+|
T Consensus 318 a~r~k 322 (322)
T cd01367 318 ADRVK 322 (322)
T ss_pred HHhhC
Confidence 99986
No 17
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=4.2e-53 Score=462.49 Aligned_cols=239 Identities=42% Similarity=0.626 Sum_probs=218.4
Q ss_pred CCCCCCCCCCCC--CCCCcHHHHHHHHHHHHhhc-CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecC
Q 003781 2 EGGARKKNGEFP--SDAGVIPRAVKQIFDILEAQ-HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDG 78 (796)
Q Consensus 2 tG~~~t~~g~~~--~~~GIIPRal~~LF~~le~~-~~~~sV~vS~lEIYNE~V~DLL~~~~~~~~~~~~~~~~l~i~ed~ 78 (796)
+|+++|.+|... .++|||||++.+||+.++.. +..|+|++||+|||||.|+|||++.+.. ....+++.+++++
T Consensus 92 SGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~----~~~~~~l~i~e~~ 167 (334)
T cd01375 92 AGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPEA----LESLPAVTILEDS 167 (334)
T ss_pred CCCeEEccCCCCcccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCCccc----cccCCceEEEEcC
Confidence 588888888643 57999999999999999865 4589999999999999999999976421 1234578999999
Q ss_pred CCCeEecccEEEEecCHHHHHHHHHhchhcccccccccCCCCCCCceEEEEEEEEeecCCCCCcceEEeeeccccCCCCc
Q 003781 79 KGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSE 158 (796)
Q Consensus 79 ~~gv~V~gL~ev~V~s~~e~~~lL~~G~~~R~~asT~~N~~SSRSHsIFtI~v~~~~~~~~~~~~i~~skL~lVDLAGSE 158 (796)
.++++|.|++++.|.+++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+....+. ...+..|+|+||||||||
T Consensus 168 ~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~-~~~~~~s~l~~VDLAGsE 246 (334)
T cd01375 168 EQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAG-SEVVRLSKLNLVDLAGSE 246 (334)
T ss_pred CCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCC-CCceEEEEEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999999999999998754443 345678999999999999
Q ss_pred cccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCC-CCCCCCCCccccccccccCCCcceeeeeecCCCCCChHhHHHH
Q 003781 159 NISRSGAREGRAREAGEINKSLLTLGRVINALVEHS-GHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLST 237 (796)
Q Consensus 159 r~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~-~hIPYRdSKLTrLLqDSLGGnskT~mIatVSPs~~~~eETlsT 237 (796)
+..++++.+.+++|+..||+||++|++||.+|+.+. .||||||||||+||+|+|||||+|+||+||||+..+++||++|
T Consensus 247 r~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~T 326 (334)
T cd01375 247 RVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLST 326 (334)
T ss_pred ccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHH
Confidence 999999999999999999999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 003781 238 LDYAHRAK 245 (796)
Q Consensus 238 L~fA~RAk 245 (796)
|+||.|++
T Consensus 327 L~fa~r~~ 334 (334)
T cd01375 327 LRFAQRVA 334 (334)
T ss_pred HHHHHhcC
Confidence 99999985
No 18
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=3.9e-53 Score=460.13 Aligned_cols=234 Identities=44% Similarity=0.729 Sum_probs=217.9
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc-CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecCCC
Q 003781 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ-HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGKG 80 (796)
Q Consensus 2 tG~~~t~~g~~~~~~GIIPRal~~LF~~le~~-~~~~sV~vS~lEIYNE~V~DLL~~~~~~~~~~~~~~~~l~i~ed~~~ 80 (796)
+|++++..|. +.++|||||++++||..+... +..|.|++||+|||||.|+|||+|.+ +++.+++++.+
T Consensus 85 SGKT~T~~G~-~~~~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~----------~~l~i~~~~~~ 153 (321)
T cd01374 85 SGKTFTMSGD-EQEPGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSP----------QELRIREDPNK 153 (321)
T ss_pred CCCceeccCC-CCCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCC----------CCceEEECCCC
Confidence 5777777776 589999999999999999754 56899999999999999999998753 47899999999
Q ss_pred CeEecccEEEEecCHHHHHHHHHhchhcccccccccCCCCCCCceEEEEEEEEeecCCCCCcceEEeeeccccCCCCccc
Q 003781 81 GVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENI 160 (796)
Q Consensus 81 gv~V~gL~ev~V~s~~e~~~lL~~G~~~R~~asT~~N~~SSRSHsIFtI~v~~~~~~~~~~~~i~~skL~lVDLAGSEr~ 160 (796)
|++|.|++++.|.|++|++.+|..|.++|+.++|.+|..|||||+||+|+|.+....+.+......|+|+||||||||+.
T Consensus 154 ~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~~ 233 (321)
T cd01374 154 GVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERA 233 (321)
T ss_pred CEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCcc
Confidence 99999999999999999999999999999999999999999999999999998765554455678899999999999999
Q ss_pred cCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCC--CCCCCCCCccccccccccCCCcceeeeeecCCCCCChHhHHHHH
Q 003781 161 SRSGAREGRAREAGEINKSLLTLGRVINALVEHS--GHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTL 238 (796)
Q Consensus 161 ~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~--~hIPYRdSKLTrLLqDSLGGnskT~mIatVSPs~~~~eETlsTL 238 (796)
...+ .+.+.+|+..||+||.+|++||.+|+.+. .|||||+||||+||+|+||||++|+|||||||...+++||++||
T Consensus 234 ~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL 312 (321)
T cd01374 234 SQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTL 312 (321)
T ss_pred ccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHH
Confidence 9998 89999999999999999999999999985 89999999999999999999999999999999999999999999
Q ss_pred HHHHHhccC
Q 003781 239 DYAHRAKNI 247 (796)
Q Consensus 239 ~fA~RAk~I 247 (796)
+||.||++|
T Consensus 313 ~~a~r~~~i 321 (321)
T cd01374 313 KFASRAKKV 321 (321)
T ss_pred HHHHHHhcC
Confidence 999999986
No 19
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=6.6e-53 Score=461.65 Aligned_cols=240 Identities=48% Similarity=0.745 Sum_probs=219.7
Q ss_pred CCCCCCCCCCC-----CCCCCcHHHHHHHHHHHHhhcC--CeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeE
Q 003781 2 EGGARKKNGEF-----PSDAGVIPRAVKQIFDILEAQH--AEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIAL 74 (796)
Q Consensus 2 tG~~~t~~g~~-----~~~~GIIPRal~~LF~~le~~~--~~~sV~vS~lEIYNE~V~DLL~~~~~~~~~~~~~~~~l~i 74 (796)
+|++++.+|.. ..++|||||++++||+.+.... .+|.|.|||+|||||.|+|||++.. ..+.++.+
T Consensus 85 SGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~-------~~~~~l~i 157 (341)
T cd01372 85 SGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPST-------SEKSPIQI 157 (341)
T ss_pred CCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcc-------cCCCCceE
Confidence 57777777754 4689999999999999998754 5899999999999999999998753 12457999
Q ss_pred EecCCCCeEecccEEEEecCHHHHHHHHHhchhcccccccccCCCCCCCceEEEEEEEEeecCC-------CCCcceEEe
Q 003781 75 MEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTP-------EGEEMIKCG 147 (796)
Q Consensus 75 ~ed~~~gv~V~gL~ev~V~s~~e~~~lL~~G~~~R~~asT~~N~~SSRSHsIFtI~v~~~~~~~-------~~~~~i~~s 147 (796)
++++.++++|.|++++.|.|++|++.+|..|..+|..++|.+|..|||||+||+|+|.+..... .+......|
T Consensus 158 ~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s 237 (341)
T cd01372 158 REDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTS 237 (341)
T ss_pred EECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeE
Confidence 9999999999999999999999999999999999999999999999999999999998765531 123456789
Q ss_pred eeccccCCCCccccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCC---CCCCCCCCccccccccccCCCcceeeeeec
Q 003781 148 KLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHS---GHVPYRDSKLTRLLRDSLGGKTKTCIIATV 224 (796)
Q Consensus 148 kL~lVDLAGSEr~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~---~hIPYRdSKLTrLLqDSLGGnskT~mIatV 224 (796)
+|+||||||||+..++++.+.+++|+..||+||++|++||.+|+.+. .|||||+||||+||+|+||||++|+||+||
T Consensus 238 ~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~v 317 (341)
T cd01372 238 KFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACV 317 (341)
T ss_pred EEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEe
Confidence 99999999999999999999999999999999999999999999986 699999999999999999999999999999
Q ss_pred CCCCCChHhHHHHHHHHHHhccCc
Q 003781 225 SPSIHCLEETLSTLDYAHRAKNIK 248 (796)
Q Consensus 225 SPs~~~~eETlsTL~fA~RAk~Ik 248 (796)
||+..+++||++||+||.|||+||
T Consensus 318 sp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 318 SPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred CCChhhHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999986
No 20
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=1.2e-52 Score=457.01 Aligned_cols=233 Identities=45% Similarity=0.696 Sum_probs=215.2
Q ss_pred CCCCCCCCCCCC--CCCCcHHHHHHHHHHHHhhc--CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEec
Q 003781 2 EGGARKKNGEFP--SDAGVIPRAVKQIFDILEAQ--HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMED 77 (796)
Q Consensus 2 tG~~~t~~g~~~--~~~GIIPRal~~LF~~le~~--~~~~sV~vS~lEIYNE~V~DLL~~~~~~~~~~~~~~~~l~i~ed 77 (796)
+|++++.+|... .++|||||++++||+.+... +.+|.|++||+|||||.++|||++.. ..+.++++
T Consensus 88 SGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~----------~~l~i~~~ 157 (325)
T cd01369 88 SGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSK----------DNLQVHED 157 (325)
T ss_pred CCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCcc----------CCceEEEc
Confidence 577777777643 48999999999999999764 44899999999999999999998652 46889999
Q ss_pred CCCCeEecccEEEEecCHHHHHHHHHhchhcccccccccCCCCCCCceEEEEEEEEeecCCCCCcceEEeeeccccCCCC
Q 003781 78 GKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGS 157 (796)
Q Consensus 78 ~~~gv~V~gL~ev~V~s~~e~~~lL~~G~~~R~~asT~~N~~SSRSHsIFtI~v~~~~~~~~~~~~i~~skL~lVDLAGS 157 (796)
+.+|++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+..... .....|+|+|||||||
T Consensus 158 ~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~---~~~~~s~l~~VDLAGs 234 (325)
T cd01369 158 KNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVET---GSKKRGKLFLVDLAGS 234 (325)
T ss_pred CCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCC---CCEEEEEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999999999998765332 2357899999999999
Q ss_pred ccccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCC-CCCCCCCCccccccccccCCCcceeeeeecCCCCCChHhHHH
Q 003781 158 ENISRSGAREGRAREAGEINKSLLTLGRVINALVEHS-GHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLS 236 (796)
Q Consensus 158 Er~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~-~hIPYRdSKLTrLLqDSLGGnskT~mIatVSPs~~~~eETls 236 (796)
|+..++++.|.+++|+..||+||++|++||.+|+++. .||||||||||+||+|+|||+|+|+||+||||+..+++||++
T Consensus 235 E~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~ 314 (325)
T cd01369 235 EKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLS 314 (325)
T ss_pred CcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHH
Confidence 9999999999999999999999999999999999987 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccC
Q 003781 237 TLDYAHRAKNI 247 (796)
Q Consensus 237 TL~fA~RAk~I 247 (796)
||+||.|||+|
T Consensus 315 TL~~a~r~~~i 325 (325)
T cd01369 315 TLRFGARAKTI 325 (325)
T ss_pred HHHHHHHhhcC
Confidence 99999999987
No 21
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=9.2e-52 Score=467.46 Aligned_cols=250 Identities=38% Similarity=0.590 Sum_probs=220.5
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc------------------------------------------------
Q 003781 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ------------------------------------------------ 33 (796)
Q Consensus 2 tG~~~t~~g~~~~~~GIIPRal~~LF~~le~~------------------------------------------------ 33 (796)
+|+++|..|. +..+||+||++.-||..|...
T Consensus 126 SGKTYTm~G~-~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr~~~~nd~~~ts~~~~~~~~ 204 (809)
T KOG0247|consen 126 SGKTYTMTGT-PDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKREAMLNDRKSTSKAHRQSTP 204 (809)
T ss_pred CCceEEeecC-CCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhhhhhccccccCcchhhccccH
Confidence 3555555664 889999999999999977430
Q ss_pred ------------------CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecCCCCeEecccEEEEecCH
Q 003781 34 ------------------HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGKGGVFVRGLEEEIVTTA 95 (796)
Q Consensus 34 ------------------~~~~sV~vS~lEIYNE~V~DLL~~~~~~~~~~~~~~~~l~i~ed~~~gv~V~gL~ev~V~s~ 95 (796)
+..|+|+|||+|||||-|||||.+.+.. ....+...+++|.++.+||.|+++|.|.|.
T Consensus 205 e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q----~~~~~~~ll~~d~~~~~~Vkgl~~V~Vsss 280 (809)
T KOG0247|consen 205 EYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQ----GKLQKLKLLREDTNGNMYVKGLTEVEVSSS 280 (809)
T ss_pred HHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhcccccc----chhhhhhhhhhccCCCeeeccccEEEeccH
Confidence 0128999999999999999999976421 111223567899999999999999999999
Q ss_pred HHHHHHHHhchhcccccccccCCCCCCCceEEEEEEEEeecCCCCCcceEEeeeccccCCCCccccCCCCchhhHHHHHH
Q 003781 96 DEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSGAREGRAREAGE 175 (796)
Q Consensus 96 ~e~~~lL~~G~~~R~~asT~~N~~SSRSHsIFtI~v~~~~~~~~~~~~i~~skL~lVDLAGSEr~~ks~a~g~r~kEa~~ 175 (796)
+|++++|..|.++|++++|.+|..|||||+||+|.|.+.... .+...+..|.|.|||||||||..++++.|.|++||++
T Consensus 281 eEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~-~~s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagN 359 (809)
T KOG0247|consen 281 EEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRS-QDSNQITVSQLSLVDLAGSERTNRTQNSGERLREAGN 359 (809)
T ss_pred HHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccc-cccCceeEEeeeeeecccchhcccccchhHHHHhhcc
Confidence 999999999999999999999999999999999999876544 3456789999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhhC-----CCCCCCCCCccccccccccCCCcceeeeeecCCCCCChHhHHHHHHHHHHhccCccc
Q 003781 176 INKSLLTLGRVINALVEH-----SGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNK 250 (796)
Q Consensus 176 INkSLlaLg~VI~aL~~~-----~~hIPYRdSKLTrLLqDSLGGnskT~mIatVSPs~~~~eETlsTL~fA~RAk~Ikn~ 250 (796)
||.||+|||+||.+|..+ ..+|||||||||++++.+|.|+.+.+||+||+|.+.+|+|+++.|+||.-|..|.+.
T Consensus 360 INtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~ 439 (809)
T KOG0247|consen 360 INTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVA 439 (809)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHHHHHHHHHHhccccccc
Confidence 999999999999999875 368999999999999999999999999999999999999999999999999999988
Q ss_pred ccccccc
Q 003781 251 PEINQKM 257 (796)
Q Consensus 251 p~vN~~~ 257 (796)
+.++..+
T Consensus 440 ~~~~~~~ 446 (809)
T KOG0247|consen 440 RPVIKKQ 446 (809)
T ss_pred CcccccC
Confidence 8776554
No 22
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=1e-51 Score=450.23 Aligned_cols=238 Identities=43% Similarity=0.662 Sum_probs=220.2
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc---CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecC
Q 003781 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ---HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDG 78 (796)
Q Consensus 2 tG~~~t~~g~~~~~~GIIPRal~~LF~~le~~---~~~~sV~vS~lEIYNE~V~DLL~~~~~~~~~~~~~~~~l~i~ed~ 78 (796)
+|++++.+|. +.++|||||++++||+.+... +..|.|++||+|||||.|+|||++.+ ..++++.+++++
T Consensus 89 SGKT~tl~G~-~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~-------~~~~~l~i~~~~ 160 (329)
T cd01366 89 SGKTYTMEGP-PENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKP-------APKKKLEIKHDS 160 (329)
T ss_pred CCCcEEecCC-CCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCc-------CCCCceEEEECC
Confidence 5777777776 589999999999999999764 46899999999999999999998753 134689999999
Q ss_pred CCCeEecccEEEEecCHHHHHHHHHhchhcccccccccCCCCCCCceEEEEEEEEeecCCCCCcceEEeeeccccCCCCc
Q 003781 79 KGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSE 158 (796)
Q Consensus 79 ~~gv~V~gL~ev~V~s~~e~~~lL~~G~~~R~~asT~~N~~SSRSHsIFtI~v~~~~~~~~~~~~i~~skL~lVDLAGSE 158 (796)
.++++|.|++++.|.|++|+..+|..|..+|..++|.+|..|||||+||+|+|.+.... ......|+|+||||||||
T Consensus 161 ~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~---~~~~~~s~l~~VDLaGsE 237 (329)
T cd01366 161 KGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ---TGEQTRGKLNLVDLAGSE 237 (329)
T ss_pred CCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC---CCcEEEEEEEEEECCCCc
Confidence 99999999999999999999999999999999999999999999999999999875433 233578999999999999
Q ss_pred cccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCcceeeeeecCCCCCChHhHHHHH
Q 003781 159 NISRSGAREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTL 238 (796)
Q Consensus 159 r~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqDSLGGnskT~mIatVSPs~~~~eETlsTL 238 (796)
+..+.++.+.+++|+..||+||.+|++||.+|+.+..|||||+||||+||+|+|||+++|+||+||||...+++||++||
T Consensus 238 ~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL 317 (329)
T cd01366 238 RLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSL 317 (329)
T ss_pred ccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCccc
Q 003781 239 DYAHRAKNIKNK 250 (796)
Q Consensus 239 ~fA~RAk~Ikn~ 250 (796)
+||.||++|++.
T Consensus 318 ~~a~~~~~i~~~ 329 (329)
T cd01366 318 RFASRVRSVELG 329 (329)
T ss_pred HHHHHhhcccCC
Confidence 999999999873
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=7.5e-51 Score=444.05 Aligned_cols=241 Identities=52% Similarity=0.800 Sum_probs=222.8
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc--CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecCC
Q 003781 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ--HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGK 79 (796)
Q Consensus 2 tG~~~t~~g~~~~~~GIIPRal~~LF~~le~~--~~~~sV~vS~lEIYNE~V~DLL~~~~~~~~~~~~~~~~l~i~ed~~ 79 (796)
+|++++.+|. +.++|||||++++||+.+... +..|+|+|||+|||||.|+|||+|. ++++.+++++.
T Consensus 91 SGKT~tl~G~-~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~----------~~~l~i~~~~~ 159 (335)
T smart00129 91 SGKTYTMSGT-PDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPS----------PKKLEIREDKK 159 (335)
T ss_pred CCCceEecCC-CCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCC----------CCCcEEEECCC
Confidence 5777777775 678999999999999999764 4589999999999999999999864 35789999999
Q ss_pred CCeEecccEEEEecCHHHHHHHHHhchhcccccccccCCCCCCCceEEEEEEEEeecCCCCCcceEEeeeccccCCCCcc
Q 003781 80 GGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSEN 159 (796)
Q Consensus 80 ~gv~V~gL~ev~V~s~~e~~~lL~~G~~~R~~asT~~N~~SSRSHsIFtI~v~~~~~~~~~~~~i~~skL~lVDLAGSEr 159 (796)
++++|.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|.+..... .......|+|+||||||||+
T Consensus 160 ~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~-~~~~~~~s~l~~VDLaGse~ 238 (335)
T smart00129 160 GGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNS-SSGSGKASKLNLVDLAGSER 238 (335)
T ss_pred CCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCC-CCCCEEEEEEEEEECCCCCc
Confidence 99999999999999999999999999999999999999999999999999998764333 33456789999999999999
Q ss_pred ccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhh--CCCCCCCCCCccccccccccCCCcceeeeeecCCCCCChHhHHHH
Q 003781 160 ISRSGAREGRAREAGEINKSLLTLGRVINALVE--HSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLST 237 (796)
Q Consensus 160 ~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~--~~~hIPYRdSKLTrLLqDSLGGnskT~mIatVSPs~~~~eETlsT 237 (796)
..+.++.+.+++|+..||+||.+|++||.+|++ +..|||||+|+||+||+|+|||+++|+||+||||...+++||++|
T Consensus 239 ~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~t 318 (335)
T smart00129 239 ASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLST 318 (335)
T ss_pred cccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHH
Confidence 999999999999999999999999999999999 567999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCccccccc
Q 003781 238 LDYAHRAKNIKNKPEIN 254 (796)
Q Consensus 238 L~fA~RAk~Ikn~p~vN 254 (796)
|+||.++++|+|+|.+|
T Consensus 319 L~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 319 LRFASRAKEIKNKAIVN 335 (335)
T ss_pred HHHHHHHhhcccCCCcC
Confidence 99999999999999875
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=1.7e-51 Score=448.64 Aligned_cols=240 Identities=49% Similarity=0.778 Sum_probs=216.6
Q ss_pred CCCCCCCCCC-CCCCCCcHHHHHHHHHHHHhhcC----CeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEe
Q 003781 2 EGGARKKNGE-FPSDAGVIPRAVKQIFDILEAQH----AEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALME 76 (796)
Q Consensus 2 tG~~~t~~g~-~~~~~GIIPRal~~LF~~le~~~----~~~sV~vS~lEIYNE~V~DLL~~~~~~~~~~~~~~~~l~i~e 76 (796)
+|++++.+|. .+.++|||||++++||..++... ..|.|+|||+|||||.|+|||+|.. ....+++.+++
T Consensus 86 SGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~------~~~~~~l~i~~ 159 (335)
T PF00225_consen 86 SGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNN------SKSRKPLKIRE 159 (335)
T ss_dssp SSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTS------SSTTSEBEEEE
T ss_pred ccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccc------cccccccceee
Confidence 3555556664 47899999999999999998753 4799999999999999999999764 11245799999
Q ss_pred cCCCC-eEecccEEEEecCHHHHHHHHHhchhcccccccccCCCCCCCceEEEEEEEEeecCCCCC-cceEEeeeccccC
Q 003781 77 DGKGG-VFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGE-EMIKCGKLNLVDL 154 (796)
Q Consensus 77 d~~~g-v~V~gL~ev~V~s~~e~~~lL~~G~~~R~~asT~~N~~SSRSHsIFtI~v~~~~~~~~~~-~~i~~skL~lVDL 154 (796)
++..| ++|+|++++.|.|+++++.+|..|..+|..+.|.+|..|||||+||+|+|.+....+.+. .....|+|+||||
T Consensus 160 ~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDL 239 (335)
T PF00225_consen 160 DSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDL 239 (335)
T ss_dssp ETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEE
T ss_pred ccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeeec
Confidence 99876 999999999999999999999999999999999999999999999999999887665443 2357899999999
Q ss_pred CCCccccCCCC-chhhHHHHHHhhhhHHHHHHHHHHHhhC--CCCCCCCCCccccccccccCCCcceeeeeecCCCCCCh
Q 003781 155 AGSENISRSGA-REGRAREAGEINKSLLTLGRVINALVEH--SGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCL 231 (796)
Q Consensus 155 AGSEr~~ks~a-~g~r~kEa~~INkSLlaLg~VI~aL~~~--~~hIPYRdSKLTrLLqDSLGGnskT~mIatVSPs~~~~ 231 (796)
||||+..+.++ .+.+.+|++.||+||.+|++||.+|+.+ ..|||||+||||+||+|+|||||+|+||+||||...++
T Consensus 240 aGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~ 319 (335)
T PF00225_consen 240 AGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDY 319 (335)
T ss_dssp EESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGH
T ss_pred ccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccH
Confidence 99999999987 4888999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhccC
Q 003781 232 EETLSTLDYAHRAKNI 247 (796)
Q Consensus 232 eETlsTL~fA~RAk~I 247 (796)
+||++||+||.++|+|
T Consensus 320 ~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 320 EETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999999987
No 25
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=1e-48 Score=425.77 Aligned_cols=234 Identities=50% Similarity=0.799 Sum_probs=216.4
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc---CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecC
Q 003781 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ---HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDG 78 (796)
Q Consensus 2 tG~~~t~~g~~~~~~GIIPRal~~LF~~le~~---~~~~sV~vS~lEIYNE~V~DLL~~~~~~~~~~~~~~~~l~i~ed~ 78 (796)
+|++++.+|. +.++|||||++++||+.+... +..|.|++||+|||+|.|+|||++.+ ...++.+++++
T Consensus 90 SGKT~tl~G~-~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~--------~~~~l~i~~~~ 160 (328)
T cd00106 90 SGKTYTMFGS-PKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEP--------PSKPLSLREDP 160 (328)
T ss_pred CCCeEEecCC-CCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCC--------CCCCcEEEEcC
Confidence 5777777776 589999999999999999876 46899999999999999999998752 24679999999
Q ss_pred CCCeEecccEEEEecCHHHHHHHHHhchhcccccccccCCCCCCCceEEEEEEEEeecCCCCCcceEEeeeccccCCCCc
Q 003781 79 KGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSE 158 (796)
Q Consensus 79 ~~gv~V~gL~ev~V~s~~e~~~lL~~G~~~R~~asT~~N~~SSRSHsIFtI~v~~~~~~~~~~~~i~~skL~lVDLAGSE 158 (796)
.++++|.|++++.|.|++|++.+|..|..+|..++|.+|..|||||+||+|+|........+. ....|+|+||||||||
T Consensus 161 ~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~-~~~~s~l~~VDLaGse 239 (328)
T cd00106 161 KGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGR-SIKSSKLNLVDLAGSE 239 (328)
T ss_pred CCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCc-cEEEEEEEEEECCCCC
Confidence 999999999999999999999999999999999999999999999999999998876543322 3678999999999999
Q ss_pred cccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCC--CCCCCCCCccccccccccCCCcceeeeeecCCCCCChHhHHH
Q 003781 159 NISRSGAREGRAREAGEINKSLLTLGRVINALVEHS--GHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLS 236 (796)
Q Consensus 159 r~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~--~hIPYRdSKLTrLLqDSLGGnskT~mIatVSPs~~~~eETls 236 (796)
+....++.+.+.+|+..||+||.+|++||.+|+.+. .|||||+||||+||+|+|||+++|+||+||||...+++||++
T Consensus 240 ~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~ 319 (328)
T cd00106 240 RAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLS 319 (328)
T ss_pred cccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHH
Confidence 999999999999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 003781 237 TLDYAHRAK 245 (796)
Q Consensus 237 TL~fA~RAk 245 (796)
||+||.|||
T Consensus 320 tL~~a~r~~ 328 (328)
T cd00106 320 TLRFASRAK 328 (328)
T ss_pred HHHHHHhcC
Confidence 999999986
No 26
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=5.7e-50 Score=467.04 Aligned_cols=243 Identities=40% Similarity=0.601 Sum_probs=223.3
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc--CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecCC
Q 003781 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ--HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGK 79 (796)
Q Consensus 2 tG~~~t~~g~~~~~~GIIPRal~~LF~~le~~--~~~~sV~vS~lEIYNE~V~DLL~~~~~~~~~~~~~~~~l~i~ed~~ 79 (796)
+|+++|..|..++++|||||++.+||..+... ++.|.+.+||+|||||.|+|||++.+ ....+.|+.++.
T Consensus 404 SGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~--------~~~k~~I~~~~~ 475 (670)
T KOG0239|consen 404 SGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDES--------YVGKLEIVDDAE 475 (670)
T ss_pred CCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccc--------cccceeEEEcCC
Confidence 57777777767899999999999999988754 57999999999999999999998653 245789999999
Q ss_pred CCeEecccEEEEecCHHHHHHHHHhchhcccccccccCCCCCCCceEEEEEEEEeecCCCCCcceEEeeeccccCCCCcc
Q 003781 80 GGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSEN 159 (796)
Q Consensus 80 ~gv~V~gL~ev~V~s~~e~~~lL~~G~~~R~~asT~~N~~SSRSHsIFtI~v~~~~~~~~~~~~i~~skL~lVDLAGSEr 159 (796)
++.+|.|++.+.|.+.+++..+++.|..+|.+++|.+|.+|||||+||+|+|...... ......|.|+|||||||||
T Consensus 476 ~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~---t~~~~~g~l~LVDLAGSER 552 (670)
T KOG0239|consen 476 GNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINEL---TGIRVTGVLNLVDLAGSER 552 (670)
T ss_pred CceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccC---cccccccceeEeecccCcc
Confidence 9999999999999999999999999999999999999999999999999999755322 2234679999999999999
Q ss_pred ccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCcceeeeeecCCCCCChHhHHHHHH
Q 003781 160 ISRSGAREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLD 239 (796)
Q Consensus 160 ~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqDSLGGnskT~mIatVSPs~~~~eETlsTL~ 239 (796)
++++++.|.|++|+.+||+||++||.||.||+.+.+|||||+||||+||||+|||++||.|+++|||...++.||+++|+
T Consensus 553 ~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~ 632 (670)
T KOG0239|consen 553 VSKSGVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLR 632 (670)
T ss_pred cCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCcccccccc
Q 003781 240 YAHRAKNIKNKPEINQ 255 (796)
Q Consensus 240 fA~RAk~Ikn~p~vN~ 255 (796)
||.|++.+...|-.-+
T Consensus 633 FA~rv~~~~lG~a~~~ 648 (670)
T KOG0239|consen 633 FATRVRSVELGSARKQ 648 (670)
T ss_pred hHHHhhceeccccccc
Confidence 9999999988876544
No 27
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.9e-48 Score=446.24 Aligned_cols=267 Identities=45% Similarity=0.691 Sum_probs=236.6
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhcC--CeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecCC
Q 003781 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQH--AEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGK 79 (796)
Q Consensus 2 tG~~~t~~g~~~~~~GIIPRal~~LF~~le~~~--~~~sV~vS~lEIYNE~V~DLL~~~~~~~~~~~~~~~~l~i~ed~~ 79 (796)
+|++++..|. ...+||||+++..||+.++... .+|.|.|||+|||||+++|||.|... .+.++++..
T Consensus 101 sgKtyt~~G~-~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~----------~~~~~~~~~ 169 (568)
T COG5059 101 SGKTYTMSGT-EEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEE----------SLNIREDSL 169 (568)
T ss_pred CCceeEeecC-ccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCccc----------cccccccCC
Confidence 3555555655 5899999999999999998765 78999999999999999999987652 267889999
Q ss_pred CCeEecccEEEEecCHHHHHHHHHhchhcccccccccCCCCCCCceEEEEEEEEeecCCCCCcceEEeeeccccCCCCcc
Q 003781 80 GGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSEN 159 (796)
Q Consensus 80 ~gv~V~gL~ev~V~s~~e~~~lL~~G~~~R~~asT~~N~~SSRSHsIFtI~v~~~~~~~~~~~~i~~skL~lVDLAGSEr 159 (796)
++++|.|+++..|.+++|++.+|.+|..+|+++.|.+|+.|||||+||++++........ ....++|+||||||||+
T Consensus 170 ~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~---~~~~~~l~lvDLagSE~ 246 (568)
T COG5059 170 LGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSG---TSETSKLSLVDLAGSER 246 (568)
T ss_pred CceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCcc---ceecceEEEEeeccccc
Confidence 999999999999999999999999999999999999999999999999999987654432 23447999999999999
Q ss_pred ccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhh--CCCCCCCCCCccccccccccCCCcceeeeeecCCCCCChHhHHHH
Q 003781 160 ISRSGAREGRAREAGEINKSLLTLGRVINALVE--HSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLST 237 (796)
Q Consensus 160 ~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~--~~~hIPYRdSKLTrLLqDSLGGnskT~mIatVSPs~~~~eETlsT 237 (796)
+.++++.+.|++||..||+||++||+||++|.+ +..|||||||||||||+|+|||+|+|++||||+|...+++||.+|
T Consensus 247 ~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~t 326 (568)
T COG5059 247 AARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINT 326 (568)
T ss_pred cchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHH
Confidence 999999999999999999999999999999998 788999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCC
Q 003781 238 LDYAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREKNGIYIP 289 (796)
Q Consensus 238 L~fA~RAk~Ikn~p~vN~~~~~~~lik~l~~EI~~Lk~el~~~r~k~gv~~~ 289 (796)
|+||.||++|+|+|.+|.. .+...++..++.++...|...+.+..
T Consensus 327 L~~a~rak~I~~~~~~~~~-------~~~~~~~~~~~~d~~~~~~~~~~~~~ 371 (568)
T COG5059 327 LKFASRAKSIKNKIQVNSS-------SDSSREIEEIKFDLSEDRSEIEILVF 371 (568)
T ss_pred HHHHHHHhhcCCcccccCc-------CcchHHHHHHHhhhhhhhhhhhhHHH
Confidence 9999999999999999963 22344666777777777766655543
No 28
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1e-46 Score=416.62 Aligned_cols=234 Identities=40% Similarity=0.626 Sum_probs=210.7
Q ss_pred CCCCCCCCCCCCC-----CCCcHHHHHHHHHHHHhhc---CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCee
Q 003781 2 EGGARKKNGEFPS-----DAGVIPRAVKQIFDILEAQ---HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIA 73 (796)
Q Consensus 2 tG~~~t~~g~~~~-----~~GIIPRal~~LF~~le~~---~~~~sV~vS~lEIYNE~V~DLL~~~~~~~~~~~~~~~~l~ 73 (796)
+|+++|.+|+.+. ..||.-++.+++|-.+... ..++.|+|||||||+.+|||||++ ++.+.
T Consensus 303 SGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~-----------k~KLr 371 (676)
T KOG0246|consen 303 SGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLND-----------KKKLR 371 (676)
T ss_pred CCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhcc-----------ccceE
Confidence 5777777776543 4699999999999999875 348999999999999999999974 35799
Q ss_pred EEecCCCCeEecccEEEEecCHHHHHHHHHhchhcccccccccCCCCCCCceEEEEEEEEeecCCCCCcceEEeeecccc
Q 003781 74 LMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVD 153 (796)
Q Consensus 74 i~ed~~~gv~V~gL~ev~V~s~~e~~~lL~~G~~~R~~asT~~N~~SSRSHsIFtI~v~~~~~~~~~~~~i~~skL~lVD 153 (796)
+.||++..|.|.||+|..|.+.+|++.+|..|+.-|+++.|..|..|||||+||.|.+... .+....||+.|||
T Consensus 372 vLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~------~~~k~hGKfSlID 445 (676)
T KOG0246|consen 372 VLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKH------GEFKLHGKFSLID 445 (676)
T ss_pred EeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecC------CcceeEeEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999642 1134679999999
Q ss_pred CCCCccccC-CCCchhhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCC-CcceeeeeecCCCCCCh
Q 003781 154 LAGSENISR-SGAREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGG-KTKTCIIATVSPSIHCL 231 (796)
Q Consensus 154 LAGSEr~~k-s~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqDSLGG-nskT~mIatVSPs~~~~ 231 (796)
|||+||... +.+..++..||..||+||++|-.||.||...++|+|||.||||.+|+|||=| |++||||+||||+..+.
T Consensus 446 LAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~Sc 525 (676)
T KOG0246|consen 446 LAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSC 525 (676)
T ss_pred ccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchh
Confidence 999999864 4566677889999999999999999999999999999999999999999988 99999999999999999
Q ss_pred HhHHHHHHHHHHhccCccccc
Q 003781 232 EETLSTLDYAHRAKNIKNKPE 252 (796)
Q Consensus 232 eETlsTL~fA~RAk~Ikn~p~ 252 (796)
+.||+||+||+|+|.+.-.+.
T Consensus 526 EhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 526 EHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred hhhHHHHHHHHHHHhhcCCCC
Confidence 999999999999998765443
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=2.9e-36 Score=304.07 Aligned_cols=129 Identities=54% Similarity=0.792 Sum_probs=122.3
Q ss_pred HHHHHHhchhcccccccccCCCCCCCceEEEEEEEEeecCCCCCcceEEeeeccccCCCCccccCCCCchhhHHHHHHhh
Q 003781 98 IYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSGAREGRAREAGEIN 177 (796)
Q Consensus 98 ~~~lL~~G~~~R~~asT~~N~~SSRSHsIFtI~v~~~~~~~~~~~~i~~skL~lVDLAGSEr~~ks~a~g~r~kEa~~IN 177 (796)
++.++..|..+|+.+.|.+|..|||||+||+|+|.+......+......|+|+||||||||+..++++.+.+.+|+..||
T Consensus 58 ~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in 137 (186)
T cd01363 58 VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANIN 137 (186)
T ss_pred HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHh
Confidence 78999999999999999999999999999999998876555444566789999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCcceeeeeecCC
Q 003781 178 KSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSP 226 (796)
Q Consensus 178 kSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqDSLGGnskT~mIatVSP 226 (796)
+||.+|++||.+|+++..||||||||||+||+|+|||||+|+||+||||
T Consensus 138 ~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 138 KSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred hHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCCeEEEEEEeCc
Confidence 9999999999999999999999999999999999999999999999999
No 30
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=98.60 E-value=0.0056 Score=75.33 Aligned_cols=62 Identities=23% Similarity=0.382 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 261 AMIKDLYSEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQ 331 (796)
Q Consensus 261 ~lik~l~~EI~~Lk~el~~~r~k~gv~~~~~~~~~~e~e~k~~~~~ie~le~~l~~~~~~l~~l~~~~~~~ 331 (796)
..|+++..+++.++.++...++. |..+......+.++.+.++..|++...++..+++.+.+.
T Consensus 448 ~~ieele~el~~~~~~l~~~~e~---------~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~ 509 (1041)
T KOG0243|consen 448 EQIEELEEELENLEKQLKDLTEL---------YMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQA 509 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444433 222233334455555666666666666666555555443
No 31
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.98 E-value=0.054 Score=63.38 Aligned_cols=147 Identities=17% Similarity=0.223 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhH-
Q 003781 427 QMFQSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSGIKALDGIAGELDGNS- 505 (796)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~e~i~~~~~~~~~~~- 505 (796)
..|+.+|...|.+++..+.... ..-.+.++.++..+ +.+++..........+..-|++..++..+..--
T Consensus 241 ~~F~~eL~~Ai~eiRaqye~~~-------~~nR~diE~~Y~~k---I~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~ 310 (546)
T KOG0977|consen 241 EYFKNELALAIREIRAQYEAIS-------RQNRKDIESWYKRK---IQEIRTSAERANVEQNYAREELRRIRSRISGLRA 310 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHH---HHHHHhhhccccchhHHHHHHHHHHHhcccchhh
Confidence 3466666666666665554433 22223333333322 222332222222233333344444433333211
Q ss_pred -HhHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhhH
Q 003781 506 -RSTFGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQSSLYKQEEKLTAYAQQQREAHSRAVENARSVSKVTVNFFKTL 584 (796)
Q Consensus 506 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 584 (796)
...|+.-+..+..-...++..+..-..-|...+++--..+...+++++.+-.+++..... .-.|
T Consensus 311 klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~---------------ki~L 375 (546)
T KOG0977|consen 311 KLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDT---------------KISL 375 (546)
T ss_pred hhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhch---------------HhHH
Confidence 345677777777788888877777777777777777777777777776655544443332 2234
Q ss_pred HHHHHhHHHHHHHH
Q 003781 585 DMHASNLTKIVEEA 598 (796)
Q Consensus 585 ~~~~~~l~~~~~~~ 598 (796)
+..+..-+.+|+.+
T Consensus 376 d~EI~~YRkLLege 389 (546)
T KOG0977|consen 376 DAEIAAYRKLLEGE 389 (546)
T ss_pred HhHHHHHHHHhccc
Confidence 55556666666665
No 32
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.89 E-value=0.25 Score=65.49 Aligned_cols=113 Identities=13% Similarity=0.150 Sum_probs=54.3
Q ss_pred HHHhhhhhhhhhhhHHHhHHHHHHHhhhhhhhhhhhHhhhhhcHHHHHHHHHHhhhhhhHhHHHHHHHHHhhhhhhHHHH
Q 003781 661 LQKEMSTMQDSTFSVKAEWSAHMNKTESHYLEDTSAVENGKKDLEVVLQNCLKQAKMGAQQWRTAQESLLNLEKNNVAAV 740 (796)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 740 (796)
++......++...........+....++-......++..++ -|+..+-+.-....+++..-.+++..+..+.. .+..+
T Consensus 1567 l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KK-kle~di~elE~~ld~ank~~~d~~K~lkk~q~-~~k~l 1644 (1930)
T KOG0161|consen 1567 LQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKK-KLEGDINELEIQLDHANKANEDAQKQLKKLQA-QLKEL 1644 (1930)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhh-hhhcchHHHHHHHHHHHHhhHHHHHHHHhhHH-HHHHH
Confidence 33333344444555555555554444444444444444433 44444444444444444444444443322221 11111
Q ss_pred HHH---HHhhhhhHHHHhHhHH-hHHHHHHHHHHHHHHH
Q 003781 741 DSI---VRYEWKPIRTYMLGFL-LLCQLRSKMQMLQTAI 775 (796)
Q Consensus 741 ~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 775 (796)
.-- .+-+-..+..++.... ++..+.+++..|.+.+
T Consensus 1645 q~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l 1683 (1930)
T KOG0161|consen 1645 QRELEDAQRAREELLEQLAEAERRLAALQAELEELREKL 1683 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 2234455556666666 8889999998888765
No 33
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.72 E-value=0.4 Score=62.80 Aligned_cols=481 Identities=17% Similarity=0.203 Sum_probs=217.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 003781 260 SAMIKDLYSEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLL----- 334 (796)
Q Consensus 260 ~~lik~l~~EI~~Lk~el~~~r~k~gv~~~~~~~~~~e~e~k~~~~~ie~le~~l~~~~~~l~~l~~~~~~~~~~----- 334 (796)
...++.+..++..|+.++...|..++-. ..+..-..++++.++..++....++..|.+.+...+..
T Consensus 653 ~~~~~~l~e~~~~l~~ev~~ir~~l~k~---------~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~ 723 (1822)
T KOG4674|consen 653 RENLKKLQEDFDSLQKEVTAIRSQLEKL---------KNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQE 723 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777776654322 11222223445555555555555555554444433322
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 335 --TAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKI 412 (796)
Q Consensus 335 --~~~l~~~l~~~~~~l~~~~~~L~~le~~l~~~~~~l~e~~~~i~~l~~~e~~l~~~~~~l~~~l~~~~~~v~~L~~kl 412 (796)
...+..+|-.....+..+...+..++.+-.. +..++..| ...++....+..+|..-+
T Consensus 724 q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~l--------------l~~t~~rL-------~~e~~~l~~e~~~L~~~l 782 (1822)
T KOG4674|consen 724 QTVHTLSQELLSANEKLEKLEAELSNLKQEKLL--------------LKETEERL-------SQELEKLSAEQESLQLLL 782 (1822)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 2233333333333333333333332221111 12222333 333333333333444333
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhhHHH
Q 003781 413 ERKDKIEEGNRILIQMFQSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSGIK 492 (796)
Q Consensus 413 ~rk~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~e 492 (796)
................-+..+...++.+...+... ...++.....++.+.......+......+..+...+.+...
T Consensus 783 ~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~l----k~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~ 858 (1822)
T KOG4674|consen 783 DNLQTQKNELEESEMATKDKCESRIKELERELQKL----KKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLT 858 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444555566666666555543 34566666667777777777777777777777777776666
Q ss_pred HHHHHHHHHhhhHHhHHhhHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHH---HHHHHH---HHHHHHHHHHH
Q 003781 493 ALDGIAGELDGNSRSTFGDLNSEVSKHSHALEDLFK-GIASEADSLLNDLQSSLYKQ---EEKLTA---YAQQQREAHSR 565 (796)
Q Consensus 493 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~e~~~---~~~~~~~~~~~ 565 (796)
.+..+...+..... -+.+|..-+..--.....+-. +...|+....+.|...+... +..+.. =..++++.+..
T Consensus 859 ~l~~~~~~~~~le~-k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s 937 (1822)
T KOG4674|consen 859 SLDSVSTNIAKLEI-KLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSS 937 (1822)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555554443321 111221111111111110000 00111111111111111111 111111 11234555555
Q ss_pred HHHHHHHHhHHHHHhHhhHHHHHHhHHHHHHHHH---HhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHh-----
Q 003781 566 AVENARSVSKVTVNFFKTLDMHASNLTKIVEEAQ---TVNDQKLFEFEKKFEESAANEERQLLE---KVAELLAS----- 634 (796)
Q Consensus 566 ~~~~~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~l~~---~i~~l~~~----- 634 (796)
.=++...+......|+..+...+..+..-+.+-. ......+..+.....-..+..+.++.. +|..+.+.
T Consensus 938 ~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~ 1017 (1822)
T KOG4674|consen 938 LEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLL 1017 (1822)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHH
Confidence 5556667777777777777777666655544442 122233333333322222333332222 22222221
Q ss_pred ----hHHHHHHHHHHHHHHHHHhHhhhhHhHHHhhhhhhhh----------hhhHHHhHHHHHHH---hhhhhhhhhhhH
Q 003781 635 ----SNARKKQLVQMAVQDLRESASSRTSQLQKEMSTMQDS----------TFSVKAEWSAHMNK---TESHYLEDTSAV 697 (796)
Q Consensus 635 ----~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~---~~~~~~e~~~~~ 697 (796)
.+..+..-+.--+..+...+......++.++-.-.+. -.++++.|...-.. ..+...+-.+-.
T Consensus 1018 ~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w 1097 (1822)
T KOG4674|consen 1018 KAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDW 1097 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccch
Confidence 1222222222222333233333333333333332221 22334444443332 555666777788
Q ss_pred hhhhhcHHHHHHHHHHhhhhhhHhHHHHHHHHHhhhh--------------hhHHHHHHHHHhhhhhHHHHhHhHH----
Q 003781 698 ENGKKDLEVVLQNCLKQAKMGAQQWRTAQESLLNLEK--------------NNVAAVDSIVRYEWKPIRTYMLGFL---- 759 (796)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~---- 759 (796)
..+...|+..+..|.++..+=..+-+.-|.-|..+.- +.+..+-+++|....-++.-++...
T Consensus 1098 ~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~ 1177 (1822)
T KOG4674|consen 1098 SEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKEIAETKLDTLKRENA 1177 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHHHHhhhHHHHHHHHH
Confidence 8888889999988888887666655555544433322 2345555666655555555554332
Q ss_pred ----hHHHHHHHHHHHHHHH
Q 003781 760 ----LLCQLRSKMQMLQTAI 775 (796)
Q Consensus 760 ----~~~~~~~~~~~~~~~~ 775 (796)
.+..+..+++.||..+
T Consensus 1178 ~L~qq~~~~~k~i~dL~~sL 1197 (1822)
T KOG4674|consen 1178 RLKQQVASLNRTIDDLQRSL 1197 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 3444555555565543
No 34
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.69 E-value=0.49 Score=62.83 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhHhhhhHhHHHhhhh
Q 003781 639 KKQLVQMAVQDLRESASSRTSQLQKEMST 667 (796)
Q Consensus 639 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (796)
+..-+...+.+++.....-...++.+...
T Consensus 1316 ~k~~l~~~l~~l~~e~~~l~e~leee~e~ 1344 (1930)
T KOG0161|consen 1316 EKSALENALRQLEHELDLLREQLEEEQEA 1344 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444
No 35
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.66 E-value=0.47 Score=61.94 Aligned_cols=38 Identities=3% Similarity=0.084 Sum_probs=20.1
Q ss_pred HHHhHHHHHHHhhhhhhhhhhhHhhhhhcHHHHHHHHHHhh
Q 003781 675 VKAEWSAHMNKTESHYLEDTSAVENGKKDLEVVLQNCLKQA 715 (796)
Q Consensus 675 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 715 (796)
+-.|...|..--+. -=+.++..+|..+-.++.+....+
T Consensus 1116 ~~~d~~~~~~~~~~---~~~~~~~~~~~~~n~~~~~~w~~~ 1153 (1311)
T TIGR00606 1116 VNKDLDIYYKTLDQ---AIMKFHSMKMEEINKIIRDLWRST 1153 (1311)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555443222 234567777777777775544333
No 36
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.53 E-value=0.35 Score=56.88 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhhHHH
Q 003781 621 ERQLLEKVAELLASSNAR 638 (796)
Q Consensus 621 ~~~l~~~i~~l~~~~~~~ 638 (796)
-++|+.....|++....-
T Consensus 358 c~~l~~Elq~LlD~ki~L 375 (546)
T KOG0977|consen 358 CQQLSVELQKLLDTKISL 375 (546)
T ss_pred HHHHHHHHHHhhchHhHH
Confidence 366666666666654443
No 37
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.48 E-value=0.74 Score=59.48 Aligned_cols=19 Identities=11% Similarity=0.455 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003781 261 AMIKDLYSEIDRLKQEVYA 279 (796)
Q Consensus 261 ~lik~l~~EI~~Lk~el~~ 279 (796)
.++.++..+++.|+.+...
T Consensus 193 ~~~~el~~~l~~L~~q~~~ 211 (1163)
T COG1196 193 DLLEELEKQLEKLERQAEK 211 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455666666666665443
No 38
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.48 E-value=0.59 Score=58.32 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhHHHHHhHhhHHHHHHhHHHHHHHHH
Q 003781 562 AHSRAVENARSVSKVTVNFFKTLDMHASNLTKIVEEAQ 599 (796)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~ 599 (796)
+|..+++. ......+.|.-..+....-|+.++.+.-
T Consensus 509 KWa~aIE~--~L~n~lnaFiv~sh~D~~~Lr~i~~~~~ 544 (1074)
T KOG0250|consen 509 KWALAIER--CLGNLLNAFIVTSHKDARILRAIMRRLK 544 (1074)
T ss_pred HHHHHHHH--HHHHhhhhheeCCHhhHHHHHHHHHHcC
Confidence 88888873 4566788899999999999988888763
No 39
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.46 E-value=0.69 Score=58.70 Aligned_cols=14 Identities=21% Similarity=0.423 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 003781 265 DLYSEIDRLKQEVY 278 (796)
Q Consensus 265 ~l~~EI~~Lk~el~ 278 (796)
.+..++..++.++.
T Consensus 674 ~l~~e~~~l~~~~~ 687 (1179)
T TIGR02168 674 ERRREIEELEEKIE 687 (1179)
T ss_pred hHHHHHHHHHHHHH
Confidence 33444444444443
No 40
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.45 E-value=0.81 Score=59.14 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=36.0
Q ss_pred hhhhhHhHHHHHHHHHhhhhhhHHHHHHHHH---------hhhhhHHHHhHhHH--hHHHHHHHHH
Q 003781 715 AKMGAQQWRTAQESLLNLEKNNVAAVDSIVR---------YEWKPIRTYMLGFL--LLCQLRSKMQ 769 (796)
Q Consensus 715 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~--~~~~~~~~~~ 769 (796)
|.-.++.|. +.++.+=|.+++.+|+=++- ...++|...||..- |++.+-.+|.
T Consensus 1054 a~ppgK~~~--~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s 1117 (1163)
T COG1196 1054 ARPPGKKLQ--SLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMS 1117 (1163)
T ss_pred EECCCCCcc--chhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhC
Confidence 444555555 55556677888888887765 45677888887766 7777766665
No 41
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.40 E-value=0.73 Score=57.48 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhccCccccccc
Q 003781 234 TLSTLDYAHRAKNIKNKPEIN 254 (796)
Q Consensus 234 TlsTL~fA~RAk~Ikn~p~vN 254 (796)
+..|=++-.||+.|+..+.+.
T Consensus 1177 ~~rt~rl~~~A~~l~~tGv~g 1197 (1758)
T KOG0994|consen 1177 ALRTHRLINRAKELKQTGVLG 1197 (1758)
T ss_pred HHHHHHHHHHHHHhhhccCch
Confidence 566777888999998887764
No 42
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.39 E-value=0.68 Score=56.95 Aligned_cols=155 Identities=21% Similarity=0.272 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCccchH--HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 259 KSAMIKDLYSEIDRLKQEVYAAREKNGIYIPRDRYL--QE---EAEKKAMAEKIERMELESESKDKQLMELQELYNSQLL 333 (796)
Q Consensus 259 ~~~lik~l~~EI~~Lk~el~~~r~k~gv~~~~~~~~--~~---e~e~k~~~~~ie~le~~l~~~~~~l~~l~~~~~~~~~ 333 (796)
++.-|..|...+..|..+++.++...+....+.... ++ ......++.+++.+..++..++.++..++........
T Consensus 236 Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~ 315 (775)
T PF10174_consen 236 KDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEE 315 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566677888888889999999987665443322222 22 2333456777999999999998888888888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 003781 334 LTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALV-------ERAIELRTELENAASDVS 406 (796)
Q Consensus 334 ~~~~l~~~l~~~~~~l~~~~~~L~~le~~l~~~~~~l~e~~~~i~~l~~~e~~l~-------~~~~~l~~~l~~~~~~v~ 406 (796)
...+++.-+..++..+...+..-.-++.+...+...+.++...+......-..+. .....+...++.....+.
T Consensus 316 ~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~ 395 (775)
T PF10174_consen 316 QDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKIN 395 (775)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777766666676666666666666655554433333332 233334444444444455
Q ss_pred HHHHHHH
Q 003781 407 NLFAKIE 413 (796)
Q Consensus 407 ~L~~kl~ 413 (796)
.|+.+|+
T Consensus 396 ~Lq~kie 402 (775)
T PF10174_consen 396 VLQKKIE 402 (775)
T ss_pred HHHHHHH
Confidence 5555554
No 43
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.33 E-value=1.2 Score=58.59 Aligned_cols=38 Identities=24% Similarity=0.306 Sum_probs=25.0
Q ss_pred HhhhhhcHHHHHHHHHHhhhhhhHhHHHHHHHHHhhhh
Q 003781 697 VENGKKDLEVVLQNCLKQAKMGAQQWRTAQESLLNLEK 734 (796)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 734 (796)
...+...++..|.++.........+|..+...+.-|++
T Consensus 842 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 879 (1486)
T PRK04863 842 LNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNR 879 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555667777777777777777777777766655554
No 44
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.31 E-value=0.61 Score=54.89 Aligned_cols=9 Identities=33% Similarity=0.486 Sum_probs=4.5
Q ss_pred eccccCCCC
Q 003781 149 LNLVDLAGS 157 (796)
Q Consensus 149 L~lVDLAGS 157 (796)
++-||=.|.
T Consensus 92 fcYv~~~g~ 100 (546)
T PF07888_consen 92 FCYVDQKGE 100 (546)
T ss_pred EEEECCCcc
Confidence 455555444
No 45
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.28 E-value=1.4 Score=58.14 Aligned_cols=93 Identities=16% Similarity=0.183 Sum_probs=48.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhh-hhHhHHHhhhhhhhhhhhHHHhH
Q 003781 601 VNDQKLFEFEKKFEESAANEERQLLEKVAELLASSNARKKQLVQMAVQDLRESASS-RTSQLQKEMSTMQDSTFSVKAEW 679 (796)
Q Consensus 601 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~q~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 679 (796)
.....+..+.....+....-++++-...... .....|..++.+.+..+-..+.. +......+.+..+.+-.-+.++-
T Consensus 1085 ~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~--~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Ek 1162 (1822)
T KOG4674|consen 1085 SRHALLSEQERDWSEKEDALEQEVNELKKRI--ESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEK 1162 (1822)
T ss_pred HHHhHHhhcccchHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHH
Confidence 3344555555555444443333332222211 12345666777777666655442 22333333666777777777777
Q ss_pred HHHHHHhhhhhhhhhh
Q 003781 680 SAHMNKTESHYLEDTS 695 (796)
Q Consensus 680 ~~~~~~~~~~~~e~~~ 695 (796)
+-+..+-+--..|..+
T Consensus 1163 ei~~tk~~~lk~e~~~ 1178 (1822)
T KOG4674|consen 1163 EIAETKLDTLKRENAR 1178 (1822)
T ss_pred HHHhhhHHHHHHHHHH
Confidence 7777665544444433
No 46
>PRK02224 chromosome segregation protein; Provisional
Probab=97.23 E-value=1.1 Score=56.02 Aligned_cols=10 Identities=20% Similarity=-0.021 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 003781 761 LCQLRSKMQM 770 (796)
Q Consensus 761 ~~~~~~~~~~ 770 (796)
+..|..++..
T Consensus 779 ~~~lS~G~~~ 788 (880)
T PRK02224 779 PEQLSGGERA 788 (880)
T ss_pred hhhcCccHHH
Confidence 4455555543
No 47
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.23 E-value=1.2 Score=56.57 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003781 263 IKDLYSEIDRLKQEVYAA 280 (796)
Q Consensus 263 ik~l~~EI~~Lk~el~~~ 280 (796)
+..+..++..+..++..+
T Consensus 679 ~~~l~~~~~~l~~~l~~~ 696 (1179)
T TIGR02168 679 IEELEEKIEELEEKIAEL 696 (1179)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555554433
No 48
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.19 E-value=1.4 Score=56.29 Aligned_cols=21 Identities=14% Similarity=0.071 Sum_probs=13.4
Q ss_pred ccEEEEecCHHHHHHHHHhch
Q 003781 86 GLEEEIVTTADEIYKILEKGS 106 (796)
Q Consensus 86 gL~ev~V~s~~e~~~lL~~G~ 106 (796)
.+..+.|.+.+++..++.--.
T Consensus 548 ~l~~ivv~~~~~a~~~i~~l~ 568 (1164)
T TIGR02169 548 RLNNVVVEDDAVAKEAIELLK 568 (1164)
T ss_pred hhCCEEECCHHHHHHHHHHHH
Confidence 355677888777666665433
No 49
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.16 E-value=1.1 Score=54.80 Aligned_cols=151 Identities=19% Similarity=0.246 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcCCccchHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 265 DLYSEIDRLKQEVYAAREKNGIYIPRDRYLQ----------EEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLL 334 (796)
Q Consensus 265 ~l~~EI~~Lk~el~~~r~k~gv~~~~~~~~~----------~e~e~k~~~~~ie~le~~l~~~~~~l~~l~~~~~~~~~~ 334 (796)
.|+..+..|..+|..+|.+.. .++....+ .+.-+..+..++..++.++..-+++..+.++.-+....+
T Consensus 228 eLr~QvrdLtEkLetlR~kR~--EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~e 305 (1243)
T KOG0971|consen 228 ELRAQVRDLTEKLETLRLKRA--EDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEE 305 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777776531 11111111 111222233344444444444444444433333222222
Q ss_pred HHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH--------HHHHHHHHHHHHHHHHHHH
Q 003781 335 TAEL--------------SEKLEKTEKKLEETEHALSDLEEKHRQANATIKEK--------DFLIANLLKSEKALVERAI 392 (796)
Q Consensus 335 ~~~l--------------~~~l~~~~~~l~~~~~~L~~le~~l~~~~~~l~e~--------~~~i~~l~~~e~~l~~~~~ 392 (796)
.+++ ++..+.++.+++-.+..+.+++-++..++..++++ .+....++.-+.+|.+...
T Consensus 306 mad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalV 385 (1243)
T KOG0971|consen 306 MADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALV 385 (1243)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHH
Confidence 2221 23334555566666666666666666666555541 2233344444556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 393 ELRTELENAASDVSNLFAKIERKDK 417 (796)
Q Consensus 393 ~l~~~l~~~~~~v~~L~~kl~rk~~ 417 (796)
.|+........|...++.++++|..
T Consensus 386 rLRDlsA~ek~d~qK~~kelE~k~s 410 (1243)
T KOG0971|consen 386 RLRDLSASEKQDHQKLQKELEKKNS 410 (1243)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhh
Confidence 7777777777777777777776555
No 50
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.13 E-value=1.7 Score=56.42 Aligned_cols=38 Identities=11% Similarity=0.246 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 516 VSKHSHALEDLFKGIASEADSLLNDLQSSLYKQEEKLTA 554 (796)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 554 (796)
+...-....+-|.+.|.|- ..+..+...+.....++..
T Consensus 752 ~~~le~~~~~eL~~~GvD~-~~I~~l~~~i~~L~~~l~~ 789 (1201)
T PF12128_consen 752 LKELEQQYNQELAGKGVDP-ERIQQLKQEIEQLEKELKR 789 (1201)
T ss_pred HHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHH
Confidence 3333334445555566664 3555666666555555543
No 51
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.13 E-value=0.59 Score=51.07 Aligned_cols=103 Identities=29% Similarity=0.437 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcCC--ccchHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 263 IKDLYSEIDRLKQEVYAAREKNGIYIP--RDRYLQEEAEKKAM-------AEKIERMELESESKDKQLMELQELYNSQLL 333 (796)
Q Consensus 263 ik~l~~EI~~Lk~el~~~r~k~gv~~~--~~~~~~~e~e~k~~-------~~~ie~le~~l~~~~~~l~~l~~~~~~~~~ 333 (796)
++.|..+...|..++...+.+.|...+ ...|. .+...+ ......++.++.+....+.+++..|+....
T Consensus 20 Vr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye---~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~ 96 (312)
T PF00038_consen 20 VRFLEQENKRLESEIEELREKKGEEVSRIKEMYE---EELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELA 96 (312)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHhcccccCcccccchh---hHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 467778888888888888776443322 12222 222222 222334444555555566666666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 334 LTAELSEKLEKTEKKLEETEHALSDLEEKHRQANA 368 (796)
Q Consensus 334 ~~~~l~~~l~~~~~~l~~~~~~L~~le~~l~~~~~ 368 (796)
....++..+..+++.++.......+++..+..++.
T Consensus 97 ~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~e 131 (312)
T PF00038_consen 97 ERKDLEEELESLRKDLDEETLARVDLENQIQSLKE 131 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHH
Confidence 56666666666666555555555555554444443
No 52
>PRK11637 AmiB activator; Provisional
Probab=97.05 E-value=0.61 Score=53.58 Aligned_cols=11 Identities=9% Similarity=0.311 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 003781 266 LYSEIDRLKQE 276 (796)
Q Consensus 266 l~~EI~~Lk~e 276 (796)
+..++..++.+
T Consensus 45 ~~~~l~~l~~q 55 (428)
T PRK11637 45 NRDQLKSIQQD 55 (428)
T ss_pred hHHHHHHHHHH
Confidence 33334444333
No 53
>PRK11637 AmiB activator; Provisional
Probab=97.03 E-value=0.91 Score=52.20 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003781 262 MIKDLYSEIDRLKQEVY 278 (796)
Q Consensus 262 lik~l~~EI~~Lk~el~ 278 (796)
-++++..+|..++.++.
T Consensus 48 ~l~~l~~qi~~~~~~i~ 64 (428)
T PRK11637 48 QLKSIQQDIAAKEKSVR 64 (428)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555554443
No 54
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.99 E-value=2 Score=54.80 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhhhHhH
Q 003781 625 LEKVAELLASSNARKKQLVQMAVQDLRESASSRTSQL 661 (796)
Q Consensus 625 ~~~i~~l~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~ 661 (796)
...|..+|..........+......|+......=..|
T Consensus 1002 ~~~l~~~i~~l~~~~~~~f~~~f~~~~~~f~~~~~~l 1038 (1164)
T TIGR02169 1002 RKAILERIEEYEKKKREVFMEAFEAINENFNEIFAEL 1038 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666667777777777777777766543333
No 55
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.91 E-value=0.91 Score=55.42 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 003781 260 SAMIKDLYSEIDRLKQEVYAAREK 283 (796)
Q Consensus 260 ~~lik~l~~EI~~Lk~el~~~r~k 283 (796)
...+.+|..||++||.||.+.|..
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~Rq~ 440 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSSRQS 440 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhh
Confidence 456678999999999999988753
No 56
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.88 E-value=1.5 Score=51.67 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHH
Q 003781 474 EELRGRLGKLKAMYGSGIKALDGI 497 (796)
Q Consensus 474 ~~l~~~~~~~k~~~~~~~e~i~~~ 497 (796)
..+++++..+.+.+.......--+
T Consensus 286 e~LkeqLr~~qe~lqaSqq~~~~L 309 (546)
T PF07888_consen 286 EALKEQLRSAQEQLQASQQEAELL 309 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555444333333
No 57
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=1.9 Score=52.09 Aligned_cols=18 Identities=17% Similarity=0.385 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHHHHhh
Q 003781 15 DAGVIPRAVKQIFDILEA 32 (796)
Q Consensus 15 ~~GIIPRal~~LF~~le~ 32 (796)
..|+-|.++.+|+...+-
T Consensus 43 qS~LP~~VLaqIWALsDl 60 (1118)
T KOG1029|consen 43 QSGLPTPVLAQIWALSDL 60 (1118)
T ss_pred hcCCChHHHHHHHHhhhc
Confidence 457888888888876543
No 58
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.59 E-value=2.4 Score=49.96 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=7.9
Q ss_pred eeeeecCCCCCChHhHHHHH
Q 003781 219 CIIATVSPSIHCLEETLSTL 238 (796)
Q Consensus 219 ~mIatVSPs~~~~eETlsTL 238 (796)
.+++.++|. ++..-|..|
T Consensus 147 s~~a~gspH--~WP~iL~ml 164 (581)
T KOG0995|consen 147 SLQAAGSPH--NWPHILGML 164 (581)
T ss_pred hhccCCCCC--ccHHHHHHH
Confidence 444444443 344444433
No 59
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=0.99 Score=54.37 Aligned_cols=50 Identities=8% Similarity=0.206 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhhH
Q 003781 441 HKTVATSVTQQEQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSG 490 (796)
Q Consensus 441 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~ 490 (796)
++.+.+.+...+....+.-.+++.|-....+..+++..++....+.|...
T Consensus 544 rq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk~e 593 (1118)
T KOG1029|consen 544 RQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYKNE 593 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344455555555666666666666666666666666555543
No 60
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=96.53 E-value=0.97 Score=44.83 Aligned_cols=57 Identities=16% Similarity=0.262 Sum_probs=25.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhhhHhHHHhhhh-hhhhhhhHHHhHHHH
Q 003781 626 EKVAELLASSNARKKQLVQMAVQDLRESASSRTSQLQKEMST-MQDSTFSVKAEWSAH 682 (796)
Q Consensus 626 ~~i~~l~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 682 (796)
+.+..-+......-...+..++..+++.+......+...+.. ...+...+..-|..|
T Consensus 136 ~~~~~~l~~~~~~~~~~i~~~~~~l~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~~ 193 (202)
T PF01442_consen 136 EELSEELTERAEELEAKISERLEELRESLEEKAEELKETLDQRIEELESSIDRISEDI 193 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444445555555555555544444444422 333444444444443
No 61
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.26 E-value=6.7 Score=51.57 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 533 EADSLLNDLQSSLYKQEEKLTAYAQQQREAHS 564 (796)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 564 (796)
.+..-+...+..+.....++..+..++.....
T Consensus 498 ~~~~~i~~~~~~~~~le~~~~~l~~~~~~~~~ 529 (1311)
T TIGR00606 498 TLKKEVKSLQNEKADLDRKLRKLDQEMEQLNH 529 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444454555555555555544444333
No 62
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.05 E-value=6.2 Score=49.24 Aligned_cols=54 Identities=22% Similarity=0.265 Sum_probs=33.5
Q ss_pred CCChHhHHHHHHHHHHhccCccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCCCcC
Q 003781 228 IHCLEETLSTLDYAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREKNGIYI 288 (796)
Q Consensus 228 ~~~~eETlsTL~fA~RAk~Ikn~p~vN~~~~~~~lik~l~~EI~~Lk~el~~~r~k~gv~~ 288 (796)
..+++.|+.+|+--- +.+ ... ..-+...+.+++.|++.|+.++..+|..++-.+
T Consensus 172 ~~hL~velAdle~ki--r~L--rqE---lEEK~enll~lr~eLddleae~~klrqe~~e~l 225 (1195)
T KOG4643|consen 172 NLHLEVELADLEKKI--RTL--RQE---LEEKFENLLRLRNELDDLEAEISKLRQEIEEFL 225 (1195)
T ss_pred hHHHHHHHHHHHHHH--HHH--HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777887765211 111 111 123456778888999999999888887655443
No 63
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.00 E-value=7.2 Score=49.50 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 390 RAIELRTELENAASDVSNLFAKIER 414 (796)
Q Consensus 390 ~~~~l~~~l~~~~~~v~~L~~kl~r 414 (796)
+....+..+......+..|..+++.
T Consensus 399 ~~vk~~E~lK~~~~k~kKleke~ek 423 (1293)
T KOG0996|consen 399 EDVKREEKLKRLTSKIKKLEKEIEK 423 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555543
No 64
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.87 E-value=4.6 Score=46.35 Aligned_cols=40 Identities=25% Similarity=0.219 Sum_probs=24.2
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 003781 460 EDMQSFVSTKAEATEELRGRLGKLKAMYGSGIKALDGIAG 499 (796)
Q Consensus 460 ~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~e~i~~~~~ 499 (796)
..++.-+......+++|...-..+++.+.+....+...++
T Consensus 213 ~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA~~re 252 (420)
T COG4942 213 AQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKARE 252 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556666777777777777777766655544443
No 65
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.84 E-value=3.1 Score=44.16 Aligned_cols=11 Identities=27% Similarity=0.486 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 003781 266 LYSEIDRLKQE 276 (796)
Q Consensus 266 l~~EI~~Lk~e 276 (796)
+..+++.....
T Consensus 6 l~~eld~~~~~ 16 (237)
T PF00261_consen 6 LKDELDEAEER 16 (237)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344443333
No 66
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.83 E-value=4.9 Score=46.33 Aligned_cols=55 Identities=11% Similarity=0.071 Sum_probs=32.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 509 FGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQSSLYKQEEKLTAYAQQQREAH 563 (796)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 563 (796)
++.+-+.+......++.-|...++.+...=+.-..-+.+++.|+..+..++....
T Consensus 492 ~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~ln 546 (622)
T COG5185 492 LKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLN 546 (622)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444455555566666666666655555555666667777777766555433
No 67
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.79 E-value=11 Score=50.04 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003781 263 IKDLYSEIDRLKQEVYAAR 281 (796)
Q Consensus 263 ik~l~~EI~~Lk~el~~~r 281 (796)
+..+..-+...+.-+.+.+
T Consensus 232 i~~m~~~l~~~r~t~~~~~ 250 (1486)
T PRK04863 232 FQDMEAALRENRMTLEAIR 250 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444444
No 68
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.75 E-value=6.7 Score=47.25 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=11.8
Q ss_pred HhHhhHHHHHHhHHHHHHHHH
Q 003781 579 NFFKTLDMHASNLTKIVEEAQ 599 (796)
Q Consensus 579 ~f~~~~~~~~~~l~~~~~~~~ 599 (796)
+.+-.|++..+.|.+.++++.
T Consensus 554 K~La~lh~~c~~Li~~v~~tG 574 (594)
T PF05667_consen 554 KLLASLHENCSQLIETVEETG 574 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 344455555566666666663
No 69
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.63 E-value=9.6 Score=48.25 Aligned_cols=29 Identities=14% Similarity=0.105 Sum_probs=17.9
Q ss_pred hhhhHHHHhHhHH-hHHHHHHHHHHHHHHH
Q 003781 747 EWKPIRTYMLGFL-LLCQLRSKMQMLQTAI 775 (796)
Q Consensus 747 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 775 (796)
.|.+.+..|+..- -+..|...|..+-..|
T Consensus 1718 ~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1718 EYLRNEQALEDKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred HHhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4666666666655 6666666666655544
No 70
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.61 E-value=2.4 Score=41.09 Aligned_cols=108 Identities=21% Similarity=0.323 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 003781 303 MAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLK 382 (796)
Q Consensus 303 ~~~~ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~L~~le~~l~~~~~~l~e~~~~i~~l~~ 382 (796)
....+..+...++...+...+.+..|+.......+.-..|..++.++...+..+..++.....++..+...+.. ...
T Consensus 22 ~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~s---w~~ 98 (132)
T PF07926_consen 22 AEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEAS---WEE 98 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHH
Confidence 34556666667777777788889999999888888888899999999999988888888887777766554432 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 383 SEKALVERAIELRTELENAASDVSNLFAKIE 413 (796)
Q Consensus 383 ~e~~l~~~~~~l~~~l~~~~~~v~~L~~kl~ 413 (796)
-+..|..+...+...+++......-||+.|+
T Consensus 99 qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 99 QKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2334444445555555555555666666554
No 71
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.59 E-value=10 Score=48.33 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 003781 259 KSAMIKDLYSEIDRLKQEVYAAR 281 (796)
Q Consensus 259 ~~~lik~l~~EI~~Lk~el~~~r 281 (796)
...+.++|...|.+++.+...++
T Consensus 463 ~~~~~keL~e~i~~lk~~~~el~ 485 (1317)
T KOG0612|consen 463 LEEMDKELEETIEKLKSEESELQ 485 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888877665554
No 72
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.58 E-value=9.4 Score=47.80 Aligned_cols=35 Identities=34% Similarity=0.429 Sum_probs=27.4
Q ss_pred cEEEEecCHHHHHHHHHhchhcccccccccCCCCC
Q 003781 87 LEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSS 121 (796)
Q Consensus 87 L~ev~V~s~~e~~~lL~~G~~~R~~asT~~N~~SS 121 (796)
|-.|.|.+..-+-.+|++|.-.|++.--.+|.-.|
T Consensus 548 LynvVv~te~tgkqLLq~g~l~rRvTiIPLnKI~s 582 (1174)
T KOG0933|consen 548 LYNVVVDTEDTGKQLLQRGNLRRRVTIIPLNKIQS 582 (1174)
T ss_pred ceeEEeechHHHHHHhhcccccceeEEEechhhhh
Confidence 34678888888999999999999877666666544
No 73
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.24 E-value=11 Score=46.59 Aligned_cols=36 Identities=25% Similarity=0.357 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 322 MELQELYNSQLLLTAELSEKLEKTEKKLEETEHALS 357 (796)
Q Consensus 322 ~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~L~ 357 (796)
+.+++-......+..+|+.+|...+.+..+....-.
T Consensus 265 eqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke 300 (1243)
T KOG0971|consen 265 EQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKE 300 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444555555555554444443333
No 74
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.01 E-value=6.5 Score=42.61 Aligned_cols=40 Identities=18% Similarity=0.424 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 003781 337 ELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFL 376 (796)
Q Consensus 337 ~l~~~l~~~~~~l~~~~~~L~~le~~l~~~~~~l~e~~~~ 376 (796)
++..+...+++++.+++..+..++.++..++..|.+++..
T Consensus 63 ~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~ 102 (265)
T COG3883 63 EIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQEL 102 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444555555544443
No 75
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=94.83 E-value=11 Score=46.13 Aligned_cols=104 Identities=25% Similarity=0.269 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 320 QLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELE 399 (796)
Q Consensus 320 ~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~L~~le~~l~~~~~~l~e~~~~i~~l~~~e~~l~~~~~~l~~~l~ 399 (796)
++..|+.+...++.+..+..+.++.++.+-+++-+.++..+++.+.+...+.+++..+ .+.......+..+++-+++
T Consensus 428 El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l---~~~kq~~d~e~~rik~ev~ 504 (861)
T PF15254_consen 428 ELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQEL---LENKQQFDIETTRIKIEVE 504 (861)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777778888888888888888877777777653 3344455556678888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 003781 400 NAASDVSNLFAKIERKDKIEEGNRILIQMF 429 (796)
Q Consensus 400 ~~~~~v~~L~~kl~rk~~~~~~n~~~~~~~ 429 (796)
++...+..++-|++ ..+.+|..+--.+
T Consensus 505 eal~~~k~~q~kLe---~sekEN~iL~itl 531 (861)
T PF15254_consen 505 EALVNVKSLQFKLE---ASEKENQILGITL 531 (861)
T ss_pred HHHHHHHHHhhhHH---HHHhhhhHhhhHH
Confidence 99999999999988 5566776655443
No 76
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.70 E-value=14 Score=45.12 Aligned_cols=111 Identities=18% Similarity=0.265 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH----HH
Q 003781 304 AEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLI----AN 379 (796)
Q Consensus 304 ~~~ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~L~~le~~l~~~~~~l~e~~~~i----~~ 379 (796)
..-...++.++...+.+|..|+........++..|+......+.++.+.+.+|+++...+..+...+..+...| .+
T Consensus 91 Rrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~ 170 (1265)
T KOG0976|consen 91 RRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGED 170 (1265)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 33444455566666666666666555444444455555555555555555555555544444443333322222 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 380 LLKSEKALVERAIELRTELENAASDVSNLFAKIER 414 (796)
Q Consensus 380 l~~~e~~l~~~~~~l~~~l~~~~~~v~~L~~kl~r 414 (796)
+.+....|.+-..++...+.+.......|+.+++.
T Consensus 171 L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k 205 (1265)
T KOG0976|consen 171 LHDKNEELNEFNMEFQTKLAEANREKKALEEKLEK 205 (1265)
T ss_pred HhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334333334444444444444455544443
No 77
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.26 E-value=16 Score=43.80 Aligned_cols=101 Identities=19% Similarity=0.299 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHhh--
Q 003781 394 LRTELENAASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILH---KTVATSVTQQEQQLKDMEEDMQSFVST-- 468 (796)
Q Consensus 394 l~~~l~~~~~~v~~L~~kl~rk~~~~~~n~~~~~~~~~~~~~~~~~~~---~~~~~~~~~q~~~~~~~~~~~~~~~~~-- 468 (796)
+...++....++..+...++.-...+..|+..+..++..+...-+.+- -.+.........++..++..+..|..-
T Consensus 110 ~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~ 189 (569)
T PRK04778 110 IESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTE 189 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444445555555555555555666666666665555443333322 244555566677777777777777532
Q ss_pred ------HHHHHHHHHHHHHHHHHHHhhHHHHH
Q 003781 469 ------KAEATEELRGRLGKLKAMYGSGIKAL 494 (796)
Q Consensus 469 ------~~~~~~~l~~~~~~~k~~~~~~~e~i 494 (796)
..+.+..++..+..+.+.+......+
T Consensus 190 ~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~ 221 (569)
T PRK04778 190 SGDYVEAREILDQLEEELAALEQIMEEIPELL 221 (569)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334566666666666555443333
No 78
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.19 E-value=10 Score=41.36 Aligned_cols=32 Identities=13% Similarity=0.252 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003781 338 LSEKLEKTEKKLEETEHALSDLEEKHRQANAT 369 (796)
Q Consensus 338 l~~~l~~~~~~l~~~~~~L~~le~~l~~~~~~ 369 (796)
+..++..++..+..+......++.++..+...
T Consensus 52 ye~el~~lr~~id~~~~eka~l~~e~~~l~~e 83 (312)
T PF00038_consen 52 YEEELRELRRQIDDLSKEKARLELEIDNLKEE 83 (312)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHH
Confidence 44444444444444444444444444333333
No 79
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=94.06 E-value=12 Score=41.61 Aligned_cols=37 Identities=11% Similarity=0.201 Sum_probs=19.9
Q ss_pred HhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Q 003781 528 KGIASEADSLLNDLQSSLY------KQEEKLTAYAQQQREAHS 564 (796)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~------~~~~e~~~~~~~~~~~~~ 564 (796)
...+-|+..+||+|.+--. ..++.-..|+-.+-+.|-
T Consensus 279 hnysLdcRrLfDsLreEnlgmlfVYs~k~qRllFAN~~fk~wt 321 (401)
T PF06785_consen 279 HNYSLDCRRLFDSLREENLGMLFVYSPKSQRLLFANSQFKTWT 321 (401)
T ss_pred ccchHHHHHHHhhhcccccceEEEecchhhHHHHhHHHHHHHh
Confidence 3346677778887765321 123233456665555554
No 80
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=93.87 E-value=20 Score=43.39 Aligned_cols=29 Identities=14% Similarity=-0.034 Sum_probs=15.9
Q ss_pred hhhhhHHHHhHhHH-hHHHHHHHHHHHHHH
Q 003781 746 YEWKPIRTYMLGFL-LLCQLRSKMQMLQTA 774 (796)
Q Consensus 746 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 774 (796)
..|+-+-+++.+-- ++..|+-|+..|..+
T Consensus 918 qRy~a~LqmyGEk~Ee~EELrlDl~dlK~m 947 (961)
T KOG4673|consen 918 QRYAAALQMYGEKDEELEELRLDLVDLKEM 947 (961)
T ss_pred HHHHHHHHHhcchHHHHHHHHhhHHHHHHH
Confidence 45555555555554 556666666555544
No 81
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=93.77 E-value=26 Score=44.38 Aligned_cols=175 Identities=15% Similarity=0.227 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 371 KEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILHKTVATSVTQ 450 (796)
Q Consensus 371 ~e~~~~i~~l~~~e~~l~~~~~~l~~~l~~~~~~v~~L~~kl~rk~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (796)
..-...|..+++....-..........+++..+++.-|+.+--| +......+-=.--..+++++..+++.+..
T Consensus 1106 ~~iTKrIt~LEk~k~~~l~~ikK~ia~lnnlqqElklLRnEK~R---mh~~~dkVDFSDIEkLE~qLq~~~~kL~d---- 1178 (1439)
T PF12252_consen 1106 TDITKRITDLEKAKLDNLDSIKKAIANLNNLQQELKLLRNEKIR---MHSGTDKVDFSDIEKLEKQLQVIHTKLYD---- 1178 (1439)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhHHHh---hccCCCcccHHHHHHHHHHHHHhhhhhHH----
Confidence 33344444444444433444455556666666666666654322 11111111000112245555555554443
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHH-----hHHhhHHHHHHHHHHHHHH
Q 003781 451 QEQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSGIKALDGIAGELDGNSR-----STFGDLNSEVSKHSHALED 525 (796)
Q Consensus 451 q~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~e~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 525 (796)
..+-.+.+.+........+.+.+++..+.++.+.+..... ++.-+-..-+.+. +++..++..+...-+.+..
T Consensus 1179 --Ayl~eitKqIsaLe~e~PKnltdvK~missf~d~laeiE~-LrnErIKkHGaSkePLDlSDlDkLk~~LQ~iNQ~LV~ 1255 (1439)
T PF12252_consen 1179 --AYLVEITKQISALEKEKPKNLTDVKSMISSFNDRLAEIEF-LRNERIKKHGASKEPLDLSDLDKLKGQLQKINQNLVK 1255 (1439)
T ss_pred --HHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHhhhhHHHH-HHHHHhhccCCCCCccchhhHHHHHHHHHHHHHHHHH
Confidence 1222333333333334455566788877777665554432 3222222122221 3455555555544444433
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 526 LFKGIASEADSLLNDLQSSLYKQEEKLTAYAQQQREAHSRAVE 568 (796)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 568 (796)
.+++++..+++..+ ...|.. |....+..++
T Consensus 1256 ----------~LIn~iR~slnqme--~~tf~~-q~~eiq~n~~ 1285 (1439)
T PF12252_consen 1256 ----------ALINTIRVSLNQME--VKTFEE-QEKEIQQNLQ 1285 (1439)
T ss_pred ----------HHHHHHHHHHHHhh--hhhhhh-hhHHHHHHHH
Confidence 66777777776554 555655 3443443333
No 82
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=93.70 E-value=13 Score=40.82 Aligned_cols=111 Identities=18% Similarity=0.176 Sum_probs=71.7
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhH--HhHHhhHHHHHHHHHHHHHHHHHhhHHH-
Q 003781 457 DMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSGIKALDGIAGELDGNS--RSTFGDLNSEVSKHSHALEDLFKGIASE- 533 (796)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~e~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 533 (796)
.+...|..-++......+-|.++++++.-.+++..-.+..+++.+..+. .+.++.=.+........++.+|..-..-
T Consensus 130 ~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv 209 (305)
T PF14915_consen 130 RLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKV 209 (305)
T ss_pred HHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4444555555555555566777777777777777777777777777664 3344444445555566677666543332
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 534 --ADSLLNDLQSSLYKQEEKLTAYAQQQREAHSRAV 567 (796)
Q Consensus 534 --~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 567 (796)
+..=-+++...|+..+.|-..+++|+..+..+..
T Consensus 210 ~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~ 245 (305)
T PF14915_consen 210 NKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKAD 245 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233367788888888888899999888887643
No 83
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.65 E-value=21 Score=42.90 Aligned_cols=44 Identities=18% Similarity=0.140 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 304 AEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEK 347 (796)
Q Consensus 304 ~~~ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~ 347 (796)
...|...+..+......+.+|...-.........++.....+++
T Consensus 111 ~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk 154 (569)
T PRK04778 111 ESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRK 154 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444333333333334333333333
No 84
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=93.63 E-value=25 Score=43.79 Aligned_cols=95 Identities=14% Similarity=0.123 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 003781 536 SLLNDLQSSLYKQEEKLTAYAQQQREAHSRAVENARSVSKVTVNFFKTLDMHASNLTKIVEEAQTVNDQKLFEFEKKFEE 615 (796)
Q Consensus 536 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 615 (796)
..+.++..|+.-.+..+..... ....|+.-++..+.=-..-+.++++-...+..+.+-.... ...|.++.+.++.
T Consensus 315 ~~~~d~r~hi~~lkesl~~ke~-~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~----~~Ei~~l~d~~d~ 389 (775)
T PF10174_consen 315 EQDSDMRQHIEVLKESLRAKEQ-EAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRL----QGEIEDLRDMLDK 389 (775)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 3445556666666555544333 5556666565555544444555555555555554333322 3345555555532
Q ss_pred HHHHHHHHHHHHHHHHHHhhH
Q 003781 616 SAANEERQLLEKVAELLASSN 636 (796)
Q Consensus 616 ~~~~~~~~l~~~i~~l~~~~~ 636 (796)
...+-..|..+|-+|-....
T Consensus 390 -~e~ki~~Lq~kie~Lee~l~ 409 (775)
T PF10174_consen 390 -KERKINVLQKKIENLEEQLR 409 (775)
T ss_pred -HHHHHHHHHHHHHHHHHHHH
Confidence 33344556666555554443
No 85
>PRK09039 hypothetical protein; Validated
Probab=93.54 E-value=16 Score=41.20 Aligned_cols=17 Identities=29% Similarity=0.223 Sum_probs=8.8
Q ss_pred eeecCCCCCChHhHHHHHHH
Q 003781 221 IATVSPSIHCLEETLSTLDY 240 (796)
Q Consensus 221 IatVSPs~~~~eETlsTL~f 240 (796)
=+.|||+ |=+.++||=+
T Consensus 12 ~~~~wpg---~vd~~~~ll~ 28 (343)
T PRK09039 12 GVDYWPG---FVDALSTLLL 28 (343)
T ss_pred CCCCCch---HHHHHHHHHH
Confidence 3456776 3345555543
No 86
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.42 E-value=23 Score=42.80 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 536 SLLNDLQSSLYKQEEKLTAYAQQQREAHSRAVENARSV 573 (796)
Q Consensus 536 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 573 (796)
.||.+.++.-...+. --.|+. +++.+..-++.+...
T Consensus 538 lifrdAKkDe~~rka-YK~La~-lh~~c~~Li~~v~~t 573 (594)
T PF05667_consen 538 LIFRDAKKDEAARKA-YKLLAS-LHENCSQLIETVEET 573 (594)
T ss_pred HHHHHhhcCHHHHHH-HHHHHH-HHHHHHHHHHHHHHh
Confidence 445555544333222 123333 555555544444443
No 87
>PRK03918 chromosome segregation protein; Provisional
Probab=93.33 E-value=28 Score=43.51 Aligned_cols=8 Identities=13% Similarity=-0.006 Sum_probs=3.7
Q ss_pred CHHHHHHH
Q 003781 94 TADEIYKI 101 (796)
Q Consensus 94 s~~e~~~l 101 (796)
|.-+++.+
T Consensus 38 til~ai~~ 45 (880)
T PRK03918 38 SILEAILV 45 (880)
T ss_pred HHHHHHHH
Confidence 34455544
No 88
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.19 E-value=22 Score=41.93 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003781 262 MIKDLYSEIDRLKQEVYAA 280 (796)
Q Consensus 262 lik~l~~EI~~Lk~el~~~ 280 (796)
.++++..++..++.++...
T Consensus 175 ~~~e~~~~i~~l~~~i~~l 193 (562)
T PHA02562 175 KIRELNQQIQTLDMKIDHI 193 (562)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555666666555544
No 89
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=92.80 E-value=18 Score=39.83 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHh
Q 003781 472 ATEELRGRLGKLKAMYGSGIKALDGIAGELDGNSRS 507 (796)
Q Consensus 472 ~~~~l~~~~~~~k~~~~~~~e~i~~~~~~~~~~~~~ 507 (796)
.+.++.+++..++......-+.|..++.+.+.-...
T Consensus 159 ~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~ 194 (294)
T COG1340 159 KLKELKAEIDELKKKAREIHEKIQELANEAQEYHEE 194 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555544443333
No 90
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=92.64 E-value=4.3 Score=47.25 Aligned_cols=110 Identities=22% Similarity=0.243 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCcCCccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 264 KDLYSEIDRLKQEVYAAREKNGIYIPRDR--YLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEK 341 (796)
Q Consensus 264 k~l~~EI~~Lk~el~~~r~k~gv~~~~~~--~~~~e~e~k~~~~~ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~ 341 (796)
+.+..|+..|+.+...++...-+|...++ |.....+.+....++..+..+++.+.+++...++....+..+..+++++
T Consensus 169 k~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk 248 (596)
T KOG4360|consen 169 KPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKK 248 (596)
T ss_pred CChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34555666666666555544433332222 2233555556677777777778888888887777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 003781 342 LEKTEKKLEETEHALSDLEEKHRQANATIKEK 373 (796)
Q Consensus 342 l~~~~~~l~~~~~~L~~le~~l~~~~~~l~e~ 373 (796)
+..+.-+.+++..-|.......+++...++|.
T Consensus 249 ~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~El 280 (596)
T KOG4360|consen 249 IKYLRHEKEELDEHLQAYKDAQRQLTAELEEL 280 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77777777777766666666555555555443
No 91
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=92.44 E-value=20 Score=39.49 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 003781 474 EELRGRLGKLKAMYGSGIKALDGIAGEL 501 (796)
Q Consensus 474 ~~l~~~~~~~k~~~~~~~e~i~~~~~~~ 501 (796)
.+++++...|+..+......++.+...+
T Consensus 203 De~Rkeade~he~~ve~~~~~~e~~ee~ 230 (294)
T COG1340 203 DELRKEADELHEEFVELSKKIDELHEEF 230 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4555555555555544444444443333
No 92
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=92.33 E-value=31 Score=41.40 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003781 424 ILIQMFQSQLTQQLEILHKTV 444 (796)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~ 444 (796)
.++...+..+-+++.+++..+
T Consensus 215 ~l~~~l~~~~P~ql~eL~~gy 235 (560)
T PF06160_consen 215 KLYKELQKEFPDQLEELKEGY 235 (560)
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 333444444444444444333
No 93
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=92.13 E-value=34 Score=41.47 Aligned_cols=98 Identities=21% Similarity=0.247 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 328 YNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHR--QANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDV 405 (796)
Q Consensus 328 ~~~~~~~~~~l~~~l~~~~~~l~~~~~~L~~le~~l~--~~~~~l~e~~~~i~~l~~~e~~l~~~~~~l~~~l~~~~~~v 405 (796)
.+...+....++++.+.+-++-+-++.....++..+. ..+..+++++.+|..+.. .+..|-+..-.-..-|
T Consensus 404 ~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~-------EGEkLSK~ql~qs~iI 476 (961)
T KOG4673|consen 404 REEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMA-------EGEKLSKKQLAQSAII 476 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHH
Confidence 3444555667777777777777777777777776663 334568888888877644 3333433333334447
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 003781 406 SNLFAKIERKDKIEEGNRILIQMFQSQ 432 (796)
Q Consensus 406 ~~L~~kl~rk~~~~~~n~~~~~~~~~~ 432 (796)
..|.+|+..-..+...+-+.+..+.++
T Consensus 477 kKLRAk~ke~etl~~K~ge~i~~L~sE 503 (961)
T KOG4673|consen 477 KKLRAKIKEAETLEEKKGELITKLQSE 503 (961)
T ss_pred HHHHHHhhhhhHHHHHhhhHHHHHHHH
Confidence 788888776666666666666665555
No 94
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=92.12 E-value=26 Score=40.14 Aligned_cols=79 Identities=13% Similarity=0.146 Sum_probs=44.9
Q ss_pred CCCcceeeeeecCCCCCChHhHHHHHHHHHHhc--cCccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCc
Q 003781 213 GGKTKTCIIATVSPSIHCLEETLSTLDYAHRAK--NIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREKNGIYIPR 290 (796)
Q Consensus 213 GGnskT~mIatVSPs~~~~eETlsTL~fA~RAk--~Ikn~p~vN~~~~~~~lik~l~~EI~~Lk~el~~~r~k~gv~~~~ 290 (796)
.+++..+-|..-+|++.-.....+++-=+.... ..++....+...--...+.+++.++......+...|.++|++.+.
T Consensus 128 ~~~s~ii~is~~~~dp~~A~~i~n~~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~ 207 (444)
T TIGR03017 128 SRESSVISIEFSGVDPRFAATVANAFAQAYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSD 207 (444)
T ss_pred cCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence 455666666666777655555555443222222 222222211111123446677777888888888889999988665
Q ss_pred c
Q 003781 291 D 291 (796)
Q Consensus 291 ~ 291 (796)
+
T Consensus 208 ~ 208 (444)
T TIGR03017 208 E 208 (444)
T ss_pred c
Confidence 4
No 95
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.08 E-value=38 Score=41.83 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 532 SEADSLLNDLQSSLYKQEEKLTAYA 556 (796)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~e~~~~~ 556 (796)
.|++.=++.++..+..++.|+..+.
T Consensus 625 g~akrq~ei~~~~~~~~d~ei~~lk 649 (697)
T PF09726_consen 625 GDAKRQLEIAQGQLRKKDKEIEELK 649 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554333
No 96
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=91.93 E-value=32 Score=40.75 Aligned_cols=19 Identities=21% Similarity=0.501 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003781 263 IKDLYSEIDRLKQEVYAAR 281 (796)
Q Consensus 263 ik~l~~EI~~Lk~el~~~r 281 (796)
+.++..|+..++.++..++
T Consensus 118 l~e~~~El~~l~~~l~~l~ 136 (511)
T PF09787_consen 118 LQELDQELRRLRRQLEELQ 136 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888874
No 97
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.86 E-value=15 Score=45.29 Aligned_cols=57 Identities=21% Similarity=0.290 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 307 IERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKH 363 (796)
Q Consensus 307 ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~L~~le~~l 363 (796)
+..........++.+..++..++.|..+..++.++.+.++..-+.+.+.+++..+..
T Consensus 553 i~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Q 609 (717)
T PF10168_consen 553 IEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQ 609 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444555555556666655555555555555444444444444444333
No 98
>PHA02562 46 endonuclease subunit; Provisional
Probab=91.73 E-value=33 Score=40.48 Aligned_cols=18 Identities=22% Similarity=0.076 Sum_probs=9.8
Q ss_pred cCHHHHHHHHHhchhccc
Q 003781 93 TTADEIYKILEKGSAKRR 110 (796)
Q Consensus 93 ~s~~e~~~lL~~G~~~R~ 110 (796)
++.-+++.+.--|...|.
T Consensus 41 Stll~aI~~~l~G~~~~~ 58 (562)
T PHA02562 41 STMLEALTFALFGKPFRD 58 (562)
T ss_pred HHHHHHHHHHHcCCCcCc
Confidence 445566666555655443
No 99
>PRK03918 chromosome segregation protein; Provisional
Probab=91.69 E-value=44 Score=41.82 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 003781 263 IKDLYSEIDRLKQEV 277 (796)
Q Consensus 263 ik~l~~EI~~Lk~el 277 (796)
++.+..++..+...+
T Consensus 171 ~~~~~~~~~~l~~~l 185 (880)
T PRK03918 171 IKEIKRRIERLEKFI 185 (880)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555555444
No 100
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=91.57 E-value=44 Score=41.61 Aligned_cols=136 Identities=19% Similarity=0.234 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Q 003781 263 IKDLYSEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQL-----LLTAE 337 (796)
Q Consensus 263 ik~l~~EI~~Lk~el~~~r~k~gv~~~~~~~~~~e~e~k~~~~~ie~le~~l~~~~~~l~~l~~~~~~~~-----~~~~~ 337 (796)
+.+-..|+..||.+|..+..++.. ..+++..+...|+.--+++...++.-++.. ....+
T Consensus 19 wekae~e~~~lk~~l~~~~~~~~~----------------~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e 82 (769)
T PF05911_consen 19 WEKAEAEAASLKQQLEAATQQKLA----------------LEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKE 82 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH----------------HHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHH
Confidence 456677889999999877665432 223334444444333333333332222211 12233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 338 LSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIER 414 (796)
Q Consensus 338 l~~~l~~~~~~l~~~~~~L~~le~~l~~~~~~l~e~~~~i~~l~~~e~~l~~~~~~l~~~l~~~~~~v~~L~~kl~r 414 (796)
+++.-..++.++.++...|.....+...+...+.+++..|..+.+.......+...+...|+...+++..|+.++.-
T Consensus 83 ~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~ 159 (769)
T PF05911_consen 83 WEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHV 159 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444456666777777777777777777777888888888887777766666778888888888888888887653
No 101
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=91.48 E-value=26 Score=38.84 Aligned_cols=138 Identities=20% Similarity=0.259 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 003781 350 EETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIERKDKIEEGNRILIQMF 429 (796)
Q Consensus 350 ~~~~~~L~~le~~l~~~~~~l~e~~~~i~~l~~~e~~l~~~~~~l~~~l~~~~~~v~~L~~kl~rk~~~~~~n~~~~~~~ 429 (796)
+.++..+..++++...++.....-......+...|..|+.. ....+..+...+..|-..+.+|.+-....+.-+..+
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~d---cv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~L 239 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLD---CVKQLSEANQQIASLSEELARKTEENRRQQEEITSL 239 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHH---HHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333332222223444445555433 345666777778888888888877555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 003781 430 QSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSGIKALDGIAGELD 502 (796)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~e~i~~~~~~~~ 502 (796)
.+++.+....+ ..+..+... +..-+......-..|..++..+++.|......+....++++
T Consensus 240 lsqivdlQ~r~----k~~~~EnEe--------L~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk 300 (306)
T PF04849_consen 240 LSQIVDLQQRC----KQLAAENEE--------LQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELK 300 (306)
T ss_pred HHHHHHHHHHH----HHHhhhHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444333333 222211111 11111222223334555555666655555555555444443
No 102
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.42 E-value=41 Score=40.97 Aligned_cols=10 Identities=40% Similarity=0.611 Sum_probs=5.2
Q ss_pred HHHHHHHHHH
Q 003781 270 IDRLKQEVYA 279 (796)
Q Consensus 270 I~~Lk~el~~ 279 (796)
+++|+.++..
T Consensus 184 ~~~L~~dl~~ 193 (650)
T TIGR03185 184 IDRLAGDLTN 193 (650)
T ss_pred HHHHHHHHHH
Confidence 4555555544
No 103
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.35 E-value=34 Score=39.92 Aligned_cols=78 Identities=14% Similarity=0.192 Sum_probs=39.2
Q ss_pred CCCcceeeeeecCCCCCChHhHHHHHHHHHHhccCccccccccc--cchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCc
Q 003781 213 GGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNKPEINQK--MMKSAMIKDLYSEIDRLKQEVYAAREKNGIYIPR 290 (796)
Q Consensus 213 GGnskT~mIatVSPs~~~~eETlsTL~fA~RAk~Ikn~p~vN~~--~~~~~lik~l~~EI~~Lk~el~~~r~k~gv~~~~ 290 (796)
.|++..+=|.--+|++.-.....+++-=+..-..+..+-..... .--...+.+++.++.....++...|.++|+..+.
T Consensus 118 ~~~s~vi~Is~~~~dP~~Aa~i~n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~ 197 (498)
T TIGR03007 118 AGRDNLFTISYEDKDPELAKDVVQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPD 197 (498)
T ss_pred cCCCCeEEEEeeCCCHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCcc
Confidence 34455555666667766555555554222211111111110000 0012234566667777777777888889887654
No 104
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.63 E-value=52 Score=40.75 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=16.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 003781 466 VSTKAEATEELRGRLGKLKAMYGSGIKALDGIAG 499 (796)
Q Consensus 466 ~~~~~~~~~~l~~~~~~~k~~~~~~~e~i~~~~~ 499 (796)
+..++..+.++..++..+++.+....+.+...+.
T Consensus 801 l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~ 834 (970)
T KOG0946|consen 801 LSEESTRLQELQSELTQLKEQIQTLLERTSAAAD 834 (970)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3344444455555555555554444444444433
No 105
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=90.56 E-value=49 Score=40.30 Aligned_cols=30 Identities=17% Similarity=0.371 Sum_probs=13.2
Q ss_pred hhhHhhhhhcHHHHH---HHHHHhhhhhhHhHH
Q 003781 694 TSAVENGKKDLEVVL---QNCLKQAKMGAQQWR 723 (796)
Q Consensus 694 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 723 (796)
+.-.+..+..|..-| +..|.+.-.-.+.|+
T Consensus 479 i~~l~~~~e~mk~kl~elq~lv~~l~~~~~e~~ 511 (617)
T PF15070_consen 479 ISRLAQDREEMKVKLLELQELVLRLVGDHNEWH 511 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Confidence 334444455555444 444544432233444
No 106
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.46 E-value=59 Score=41.10 Aligned_cols=72 Identities=8% Similarity=0.172 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHH
Q 003781 539 NDLQSSLYKQEEKLTAYAQQQREAHSRAVENARSVSKVTVNFFKTLDMHASNLTKIVEEAQTVNDQKLFEFEKKFE 614 (796)
Q Consensus 539 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 614 (796)
+++..-..+.+.+++.+....+..|..-- .....+.+...++...=.+|..++...-..-...+..+..+|+
T Consensus 449 ~~~~~~~~~~k~~~del~~~Rk~lWREE~----~l~~~i~~~~~dl~~~~~~L~~~~~r~v~nGi~~v~~I~e~~k 520 (1200)
T KOG0964|consen 449 EEFDAENTELKRELDELQDKRKELWREEK----KLRSLIANLEEDLSRAEKNLRATMNRSVANGIDSVRKIKEELK 520 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHhc
Confidence 44444444455555555566666676311 2222333344444444445555554443344444555555443
No 107
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=90.37 E-value=0.064 Score=63.83 Aligned_cols=81 Identities=46% Similarity=0.481 Sum_probs=66.6
Q ss_pred hchhcccccccccCCCCCCCceEEEEEEEEeecCCCCCcceEEeeeccccCCCCccccCCCCchhhHHHHHHhhhhHHHH
Q 003781 104 KGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTL 183 (796)
Q Consensus 104 ~G~~~R~~asT~~N~~SSRSHsIFtI~v~~~~~~~~~~~~i~~skL~lVDLAGSEr~~ks~a~g~r~kEa~~INkSLlaL 183 (796)
.....+..+++..|-+++++|++|+......... ..... ++.|||||+||. .+...|.++++...+|++|..+
T Consensus 486 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--~~~~~----~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~ 558 (568)
T COG5059 486 KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSS--TKELS----LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSL 558 (568)
T ss_pred hhccchhhcccchhhhhcccchhhhhcccchhhh--hHHHH----hhhhhccccccc-hhhhhHHHHHhhHhhhhccccc
Confidence 5677888899999999999999998776422111 11111 799999999999 9999999999999999999999
Q ss_pred HHHHHHHh
Q 003781 184 GRVINALV 191 (796)
Q Consensus 184 g~VI~aL~ 191 (796)
|.+|.++.
T Consensus 559 ~d~~~~~~ 566 (568)
T COG5059 559 GDVIHALG 566 (568)
T ss_pred hhhhhhcc
Confidence 99998875
No 108
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=90.29 E-value=42 Score=39.12 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003781 395 RTELENAASDVSNLFAKIE 413 (796)
Q Consensus 395 ~~~l~~~~~~v~~L~~kl~ 413 (796)
...+++...+.++|...|-
T Consensus 409 ~~slek~~~~~~sl~~~i~ 427 (622)
T COG5185 409 FKSLEKTLRQYDSLIQNIT 427 (622)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3444444444555554443
No 109
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.26 E-value=17 Score=35.10 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCccchHHHHHHHHHHHHHHHHHH
Q 003781 259 KSAMIKDLYSEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERME 311 (796)
Q Consensus 259 ~~~lik~l~~EI~~Lk~el~~~r~k~gv~~~~~~~~~~e~e~k~~~~~ie~le 311 (796)
...++..|...|.++..|+..++.. +...+.++..+.++|-.+.
T Consensus 14 ~~~~ve~L~s~lr~~E~E~~~l~~e---------l~~l~~~r~~l~~Eiv~l~ 57 (120)
T PF12325_consen 14 SVQLVERLQSQLRRLEGELASLQEE---------LARLEAERDELREEIVKLM 57 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777766643 2233444444555554443
No 110
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=89.94 E-value=66 Score=40.81 Aligned_cols=89 Identities=20% Similarity=0.306 Sum_probs=51.0
Q ss_pred cCCCCCChHhHHHHHHHHHHhccCccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhC-CCcCCccchHHHHHHHHH
Q 003781 224 VSPSIHCLEETLSTLDYAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREKN-GIYIPRDRYLQEEAEKKA 302 (796)
Q Consensus 224 VSPs~~~~eETlsTL~fA~RAk~Ikn~p~vN~~~~~~~lik~l~~EI~~Lk~el~~~r~k~-gv~~~~~~~~~~e~e~k~ 302 (796)
..|+...-+-+.-.+.|++|+-..+-.- . -|.++-+-|+.+|..+|..+ |+.+ +.+.-.
T Consensus 246 er~d~~ykerlmDs~fykdRveelkedN--------~----vLleekeMLeeQLq~lrarse~~tl--------eseiiq 305 (1195)
T KOG4643|consen 246 ERPDTTYKERLMDSDFYKDRVEELKEDN--------R----VLLEEKEMLEEQLQKLRARSEGATL--------ESEIIQ 305 (1195)
T ss_pred hcCCCccchhhhhhHHHHHHHHHHHhhh--------H----HHHHHHHHHHHHHHHHHhccccCCh--------HHHHHH
Confidence 4455555666777888888877665421 1 24456667788888888765 3222 233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 303 MAEKIERMELESESKDKQLMELQELYNSQL 332 (796)
Q Consensus 303 ~~~~ie~le~~l~~~~~~l~~l~~~~~~~~ 332 (796)
++.++..|..++..-+.++++|.......+
T Consensus 306 lkqkl~dm~~erdtdr~kteeL~eEnstLq 335 (1195)
T KOG4643|consen 306 LKQKLDDMRSERDTDRHKTEELHEENSTLQ 335 (1195)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555444433
No 111
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=89.25 E-value=34 Score=36.54 Aligned_cols=67 Identities=22% Similarity=0.337 Sum_probs=42.8
Q ss_pred HhHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhHHHHHHHHHH
Q 003781 579 NFFKTLDMHASNLTKIVEEAQTVNDQKLFEFEKKFEESAANE-------ERQLLEKVAELLASSNARKKQLVQM 645 (796)
Q Consensus 579 ~f~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~l~~~i~~l~~~~~~~q~~~~~~ 645 (796)
..++++..+..++...++.+-......++.+...+++.-... +..+++.|+.|-+.......+|...
T Consensus 150 ~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~~R~~~ 223 (247)
T PF06705_consen 150 NILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALESQEREQS 223 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456677777788888888777666666666666665444322 2346667777666666666655543
No 112
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=89.24 E-value=69 Score=40.08 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Q 003781 622 RQLLEKVAELLASSNARKKQLVQM 645 (796)
Q Consensus 622 ~~l~~~i~~l~~~~~~~q~~~~~~ 645 (796)
..||+-|..||-.+.+-|.+.|..
T Consensus 794 t~lm~aI~~Lv~as~~lQ~EIVas 817 (980)
T KOG0980|consen 794 TALMEAIMALVKASRELQTEIVAS 817 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 568889999999999999999876
No 113
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=88.76 E-value=62 Score=38.98 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHH
Q 003781 259 KSAMIKDLYSEIDRLKQ 275 (796)
Q Consensus 259 ~~~lik~l~~EI~~Lk~ 275 (796)
-..+++.|+.||+.|-+
T Consensus 64 ~~~llK~yQ~EiD~Ltk 80 (629)
T KOG0963|consen 64 VNPLLKSYQSEIDNLTK 80 (629)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35678888888887754
No 114
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=88.68 E-value=33 Score=35.67 Aligned_cols=19 Identities=32% Similarity=0.551 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003781 263 IKDLYSEIDRLKQEVYAAR 281 (796)
Q Consensus 263 ik~l~~EI~~Lk~el~~~r 281 (796)
|++|..++..+..++..++
T Consensus 14 i~~L~n~l~elq~~l~~l~ 32 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELR 32 (194)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554443
No 115
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=88.32 E-value=75 Score=39.34 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 303 MAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLE 360 (796)
Q Consensus 303 ~~~~ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~L~~le 360 (796)
+..+|..++.++...+..+...+...+.......++....+.++.+...++..+.+++
T Consensus 32 ~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K 89 (717)
T PF09730_consen 32 LQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYK 89 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666555555555555555555445555544444444444444444443
No 116
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=87.82 E-value=45 Score=36.22 Aligned_cols=121 Identities=15% Similarity=0.205 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHhhHHHHH
Q 003781 437 LEILHKTVATSVTQQEQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSGIKALDGIAGELDGNSRSTFGDLNSEV 516 (796)
Q Consensus 437 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~ 516 (796)
+..-.+.+.+|...++.+-.-.-..+.+|-.--.--.+.++.+.++..+...+.+.+|+.++..+ ..+..+...+
T Consensus 176 L~~KS~eI~tFttv~s~k~eF~L~ELESFKEinTtwfNgmksEWA~V~~AwkneLsEINSI~~gv-----EeLkKLAqEI 250 (353)
T PF01540_consen 176 LNKKSREIDTFTTVQSTKEEFVLNELESFKEINTTWFNGMKSEWARVQEAWKNELSEINSIIKGV-----EELKKLAQEI 250 (353)
T ss_pred HHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 33444556666655444444444555566555444556777777777777777777777666533 3456666677
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 517 SKHSHALEDLFKGIASEADSLLNDLQSSLYKQEEKLTAYAQQQREA 562 (796)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 562 (796)
..|...+..-...+..-|+-.-..-.....--++++..|++|+-.+
T Consensus 251 ss~Sn~lk~TIseLEKkFkIdd~tn~~e~k~fK~qlE~ladqLl~k 296 (353)
T PF01540_consen 251 SSHSNKLKATISELEKKFKIDDSTNKEEMKKFKNQLENLADQLLEK 296 (353)
T ss_pred HHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHh
Confidence 7777777665555554443222222222333555666666655443
No 117
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.70 E-value=32 Score=39.81 Aligned_cols=14 Identities=7% Similarity=-0.095 Sum_probs=10.2
Q ss_pred CCCCCCcccccccc
Q 003781 197 VPYRDSKLTRLLRD 210 (796)
Q Consensus 197 IPYRdSKLTrLLqD 210 (796)
-+|-.+++.|+.+.
T Consensus 209 w~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 209 WWDSSCPVCRYCQS 222 (493)
T ss_pred cccCcChhhhhhcC
Confidence 35667788888776
No 118
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=87.57 E-value=82 Score=38.98 Aligned_cols=75 Identities=21% Similarity=0.130 Sum_probs=39.4
Q ss_pred CcceeeeeecCCCCCChHhHHHHHHHHHHhccCcccccccccc--chHHHHHHHHHHHHHHHHHHHHHHhhCCCcCC
Q 003781 215 KTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNKPEINQKM--MKSAMIKDLYSEIDRLKQEVYAAREKNGIYIP 289 (796)
Q Consensus 215 nskT~mIatVSPs~~~~eETlsTL~fA~RAk~Ikn~p~vN~~~--~~~~lik~l~~EI~~Lk~el~~~r~k~gv~~~ 289 (796)
++..+-|.--+|++.-...-.+++-=+....++..+-...... --...+.+++.++.....++...|.++|+..+
T Consensus 153 ~s~ii~Is~~~~dP~~Aa~iaN~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~ 229 (754)
T TIGR01005 153 KTRIIAIEFRSEDPKLAAAIPDAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMG 229 (754)
T ss_pred ccEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 3455555556666655555555554444333332222211100 01234556666666666777788888888764
No 119
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.38 E-value=37 Score=39.32 Aligned_cols=12 Identities=8% Similarity=0.379 Sum_probs=7.6
Q ss_pred CceEEEEEEEEe
Q 003781 123 SHSIFSITIHIK 134 (796)
Q Consensus 123 SHsIFtI~v~~~ 134 (796)
-|.+|...|...
T Consensus 148 Chll~V~~ve~~ 159 (493)
T KOG0804|consen 148 CHLLYVDRVEVT 159 (493)
T ss_pred eeEEEEEEEEEE
Confidence 477777766544
No 120
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.36 E-value=6.2 Score=40.65 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCC
Q 003781 263 IKDLYSEIDRLKQEVYAAREKNG 285 (796)
Q Consensus 263 ik~l~~EI~~Lk~el~~~r~k~g 285 (796)
+..+...+..++.||..+....|
T Consensus 69 ~~~le~~~~~l~~ELael~r~~~ 91 (194)
T PF08614_consen 69 ISSLEQKLAKLQEELAELYRSKG 91 (194)
T ss_dssp -----------------------
T ss_pred ccccccccccccccccccccccc
Confidence 34444555566666655544443
No 121
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=87.34 E-value=54 Score=36.59 Aligned_cols=7 Identities=29% Similarity=0.373 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 003781 183 LGRVINA 189 (796)
Q Consensus 183 Lg~VI~a 189 (796)
|..|+.|
T Consensus 51 l~~~v~A 57 (312)
T smart00787 51 LDQYVVA 57 (312)
T ss_pred HHHHHHH
Confidence 3344433
No 122
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.23 E-value=65 Score=37.45 Aligned_cols=44 Identities=20% Similarity=0.251 Sum_probs=19.8
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCcce
Q 003781 169 RAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKT 218 (796)
Q Consensus 169 r~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqDSLGGnskT 218 (796)
|..+-..=|+--..|..|-..|.+ .||-+| .-. .-|++|.+++|
T Consensus 159 r~q~q~ld~q~pehfqq~~~~l~d---pi~~sd--~~~-~ld~wg~~~~t 202 (521)
T KOG1937|consen 159 RNQEQKLDNQTPEHFQQCNAVLND---PIPNSD--PRK-WLDQWGNSSHT 202 (521)
T ss_pred HHHHHhhhhccHHHHHHHHHHhcC---cccccc--hhh-HHHHHhccCCc
Confidence 444444445555555555544433 233222 111 22556666665
No 123
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.08 E-value=50 Score=35.99 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 311 ELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALS 357 (796)
Q Consensus 311 e~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~L~ 357 (796)
+.+++.++.++.+++...++...+..++..++.+++.++..++..+.
T Consensus 51 q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 51 QNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333333334444444444433333333
No 124
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=86.51 E-value=48 Score=41.04 Aligned_cols=18 Identities=33% Similarity=0.207 Sum_probs=13.6
Q ss_pred HhhhhHHHHHHHHHHHhh
Q 003781 175 EINKSLLTLGRVINALVE 192 (796)
Q Consensus 175 ~INkSLlaLg~VI~aL~~ 192 (796)
.|=+|=..+.+||..|.-
T Consensus 79 eiL~Sr~v~~~VV~~L~L 96 (754)
T TIGR01005 79 EILSSNEILKQVVDKLGL 96 (754)
T ss_pred HHHccHHHHHHHHHHcCC
Confidence 455688888999988853
No 125
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=85.91 E-value=64 Score=36.03 Aligned_cols=51 Identities=24% Similarity=0.222 Sum_probs=21.0
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 364 RQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIER 414 (796)
Q Consensus 364 ~~~~~~l~e~~~~i~~l~~~e~~l~~~~~~l~~~l~~~~~~v~~L~~kl~r 414 (796)
..++..+++....+......-..+..+...+...+++.......+...|..
T Consensus 207 ~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ 257 (312)
T smart00787 207 DRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAE 257 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344443333333333322333333344444444444444444444443
No 126
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=85.77 E-value=41 Score=41.94 Aligned_cols=88 Identities=22% Similarity=0.297 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 342 LEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIERKDKIEEG 421 (796)
Q Consensus 342 l~~~~~~l~~~~~~L~~le~~l~~~~~~l~e~~~~i~~l~~~e~~l~~~~~~l~~~l~~~~~~v~~L~~kl~rk~~~~~~ 421 (796)
++.++..+.+.+..+..++.++..++..-...+..+.........+..+...+...+......+..|..+++..+....+
T Consensus 619 lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e 698 (769)
T PF05911_consen 619 LESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEE 698 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 33333333444444444444443333333333333333444444444445555566666666677777777666555554
Q ss_pred hHHHHHHH
Q 003781 422 NRILIQMF 429 (796)
Q Consensus 422 n~~~~~~~ 429 (796)
+...+..+
T Consensus 699 ~~~kc~~L 706 (769)
T PF05911_consen 699 LEAKCREL 706 (769)
T ss_pred hhhHHHHH
Confidence 44444443
No 127
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.71 E-value=1.2e+02 Score=39.17 Aligned_cols=46 Identities=15% Similarity=0.119 Sum_probs=22.5
Q ss_pred CccccccccccCCCcceeee----eecCCCCCChHhHHHHHHHHHHhccC
Q 003781 202 SKLTRLLRDSLGGKTKTCII----ATVSPSIHCLEETLSTLDYAHRAKNI 247 (796)
Q Consensus 202 SKLTrLLqDSLGGnskT~mI----atVSPs~~~~eETlsTL~fA~RAk~I 247 (796)
-=+--+|-|-+|-|-..-.| .-|+-....+.+-.+.++++.+=+.-
T Consensus 250 ~GmLEYLEDIIGT~ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~ 299 (1293)
T KOG0996|consen 250 EGMLEYLEDIIGTNRYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKA 299 (1293)
T ss_pred chHHHHHHHHhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34555677777765332222 12233333445555566666655443
No 128
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=85.56 E-value=65 Score=35.85 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 003781 263 IKDLYSEIDRLKQEVYAAREK 283 (796)
Q Consensus 263 ik~l~~EI~~Lk~el~~~r~k 283 (796)
+..|..+...||.++...|.+
T Consensus 29 ~~sL~qen~~Lk~El~~ek~~ 49 (310)
T PF09755_consen 29 IESLQQENRVLKRELETEKAR 49 (310)
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 344455555555555444443
No 129
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=85.49 E-value=14 Score=38.03 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 003781 405 VSNLFAKIERKDKIEEGNRILIQMFQSQ 432 (796)
Q Consensus 405 v~~L~~kl~rk~~~~~~n~~~~~~~~~~ 432 (796)
+..+..++. +++.+|+.++..+-..
T Consensus 160 ~~~~e~k~~---~l~~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 160 LNMLEEKLR---KLEEENRELVERWMQR 184 (194)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 344444444 6677888887776433
No 130
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=84.95 E-value=61 Score=35.00 Aligned_cols=69 Identities=17% Similarity=0.190 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 003781 356 LSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIERKDKIEEGNRI 424 (796)
Q Consensus 356 L~~le~~l~~~~~~l~e~~~~i~~l~~~e~~l~~~~~~l~~~l~~~~~~v~~L~~kl~rk~~~~~~n~~ 424 (796)
+..+.....++...+.+.+.....+..++-.-.--+..+...|+.+.+.+.-|..++++|..+-..-+.
T Consensus 100 lsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqR 168 (333)
T KOG1853|consen 100 LSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQR 168 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333333333333334443333333443333333334455666666777777778888877765544433
No 131
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=84.50 E-value=24 Score=35.46 Aligned_cols=97 Identities=12% Similarity=0.168 Sum_probs=37.5
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHhhhHHhHHhhHHHHHHHHHHHHHHHHHhhH
Q 003781 456 KDMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSGIKAL----DGIAGELDGNSRSTFGDLNSEVSKHSHALEDLFKGIA 531 (796)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~e~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (796)
..|.+.+..--+.-.+.+.+++..+....+.+...--++ ..+.+.++..+...+.+....+..........=..+.
T Consensus 48 ~~l~eeik~~n~~~~e~l~~~~~kl~et~~~L~k~~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~~~~~~~~e~l~ 127 (155)
T PF07464_consen 48 SSLQEEIKDANPEAEEALKQLKTKLEETAEKLRKANPEVEKQANELQEKLQSAVQSLVQESQKLAKEVSENSEGANEKLQ 127 (155)
T ss_dssp HHHHHHHTT-SSTHHHHHHHHHHHHHHHHHGGGG-SHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHS---SS-GGGH
T ss_pred HHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 333344433333344455555555555555544322222 2223333333322222222222222222222223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003781 532 SEADSLLNDLQSSLYKQEEKL 552 (796)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~e~ 552 (796)
.-++.++++.+..+......|
T Consensus 128 ~~~K~~~D~~~k~~~~~~~~l 148 (155)
T PF07464_consen 128 PAIKQAYDDAVKAAQKVQKQL 148 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666655544333
No 132
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=84.39 E-value=88 Score=36.32 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 003781 327 LYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLI 377 (796)
Q Consensus 327 ~~~~~~~~~~~l~~~l~~~~~~l~~~~~~L~~le~~l~~~~~~l~e~~~~i 377 (796)
.+.....+...|+..+..++.++..+...+.++...+...+..|..-+..+
T Consensus 53 ~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l 103 (420)
T COG4942 53 KIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARL 103 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 333333333344444444444444444444444444444444444433333
No 133
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=84.13 E-value=1.4e+02 Score=38.38 Aligned_cols=10 Identities=40% Similarity=0.690 Sum_probs=5.4
Q ss_pred HHHHHhcccc
Q 003781 778 HLLTIHCNLT 787 (796)
Q Consensus 778 ~~~~~~~~~~ 787 (796)
|-+.--|-|.
T Consensus 894 ~~lL~~ckl~ 903 (1141)
T KOG0018|consen 894 HNLLSKCKLE 903 (1141)
T ss_pred HHHHHHhhhc
Confidence 5555556554
No 134
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=83.88 E-value=68 Score=34.65 Aligned_cols=32 Identities=19% Similarity=0.492 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 003781 437 LEILHKTVATSVTQQEQQLKDMEEDMQSFVST 468 (796)
Q Consensus 437 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~ 468 (796)
...+...+...+..|...++.+......|...
T Consensus 202 ~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~~~ 233 (296)
T PF13949_consen 202 FDPLQNRIQQNLSKQEELLQEIQEANEEFAQS 233 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666666666666666666666544
No 135
>PLN02939 transferase, transferring glycosyl groups
Probab=83.56 E-value=1.4e+02 Score=38.19 Aligned_cols=193 Identities=19% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 266 LYSEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKT 345 (796)
Q Consensus 266 l~~EI~~Lk~el~~~r~k~gv~~~~~~~~~~e~e~k~~~~~ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~ 345 (796)
+..++++|+.++...-...|.+... +..++..+..+.-.+...+.-++....... +..+.+..+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 262 (977)
T PLN02939 199 LEEQLEKLRNELLIRGATEGLCVHS------------LSKELDVLKEENMLLKDDIQFLKAELIEVA----ETEERVFKL 262 (977)
T ss_pred hHHHHHHHhhhhhcccccccccccc------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----hhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 346 EKKLEETEHALSDLEEKHRQANATIKE-----------KDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIER 414 (796)
Q Consensus 346 ~~~l~~~~~~L~~le~~l~~~~~~l~e-----------~~~~i~~l~~~e~~l~~~~~~l~~~l~~~~~~v~~L~~kl~r 414 (796)
+++-.-+...+.+++..+-..+....+ +-.-+..+...-..-.+++.-....-++..+.++.|.+-++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 341 (977)
T PLN02939 263 EKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLK- 341 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH-
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 003781 415 KDKIEEGNRILIQMFQSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVSTKAEATEELRGR 479 (796)
Q Consensus 415 k~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 479 (796)
+..........-..+.++++-++.++..+..+...+++..+..++.|.++.....++-++.
T Consensus 342 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (977)
T PLN02939 342 ----EANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKR 402 (977)
T ss_pred ----HhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
No 136
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=83.36 E-value=1.3e+02 Score=37.41 Aligned_cols=36 Identities=22% Similarity=0.423 Sum_probs=28.3
Q ss_pred HHHhHH-----HHHHHhhhhhhhhhhhHhhhhhcHHHHHHH
Q 003781 675 VKAEWS-----AHMNKTESHYLEDTSAVENGKKDLEVVLQN 710 (796)
Q Consensus 675 ~~~~~~-----~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 710 (796)
++.+|. +|..+-|.+|.-+....++-+.++..-|+.
T Consensus 816 ~~s~wS~ss~stfts~de~~f~~glaalda~iarlq~sl~~ 856 (861)
T PF15254_consen 816 GKSDWSISSFSTFTSRDEQDFRNGLAALDANIARLQRSLQT 856 (861)
T ss_pred cccccccccccccccccHHHHHhhHHHhhhhHHHHHHHHHh
Confidence 347776 567778889999999999999888877653
No 137
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=82.54 E-value=1.2e+02 Score=36.66 Aligned_cols=29 Identities=31% Similarity=0.365 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 302 AMAEKIERMELESESKDKQLMELQELYNS 330 (796)
Q Consensus 302 ~~~~~ie~le~~l~~~~~~l~~l~~~~~~ 330 (796)
+..++|..+|.-++.+..++..-.+.+.+
T Consensus 136 aQgEKIrDLE~cie~kr~kLnatEEmLQq 164 (861)
T KOG1899|consen 136 AQGEKIRDLETCIEEKRNKLNATEEMLQQ 164 (861)
T ss_pred HhhhhHHHHHHHHHHHHhhhchHHHHHHH
Confidence 44667777777777666665544444433
No 138
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=82.51 E-value=1e+02 Score=35.62 Aligned_cols=42 Identities=26% Similarity=0.506 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHH
Q 003781 385 KALVERAIELRTELENAASD-VSNLFAKIERKDKIEEGNRILIQMF 429 (796)
Q Consensus 385 ~~l~~~~~~l~~~l~~~~~~-v~~L~~kl~rk~~~~~~n~~~~~~~ 429 (796)
++|.-.+..+..+++...+. +..||.+++ +++.+.+.++..+
T Consensus 182 eQLRre~V~lentlEQEqEalvN~LwKrmd---kLe~ekr~Lq~Kl 224 (552)
T KOG2129|consen 182 EQLRREAVQLENTLEQEQEALVNSLWKRMD---KLEQEKRYLQKKL 224 (552)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 44555566666666655555 567776665 6666666666554
No 139
>PRK09039 hypothetical protein; Validated
Probab=82.43 E-value=92 Score=35.14 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 304 AEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEH 354 (796)
Q Consensus 304 ~~~ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~ 354 (796)
.+++..++.++...+.++.++-+...-......+++..+..++..+...+.
T Consensus 45 s~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~ 95 (343)
T PRK09039 45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEA 95 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544444444444555555555444443333
No 140
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=82.36 E-value=67 Score=33.45 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003781 345 TEKKLEETEHALSDLEEKHRQA 366 (796)
Q Consensus 345 ~~~~l~~~~~~L~~le~~l~~~ 366 (796)
+.+++++++..+..+++..+.+
T Consensus 65 l~eEledLk~~~~~lEE~~~~L 86 (193)
T PF14662_consen 65 LEEELEDLKTLAKSLEEENRSL 86 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444433
No 141
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=82.30 E-value=1.6e+02 Score=37.65 Aligned_cols=109 Identities=13% Similarity=0.151 Sum_probs=52.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhhHHHHHHhHHHHHHHHHHhhhh
Q 003781 525 DLFKGIASEADSLLNDLQSSLYKQEEKLTAYAQQQREAHSRAVENARSVSKVTVNFFKTLDMHASNLTKIVEEAQTVNDQ 604 (796)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~ 604 (796)
+++.+--...+..|++....-+..+.|+.....+..+..+. ++.+...++.-..-|+.-.+.+.+. -.
T Consensus 393 kwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~----i~~l~~si~e~~~r~~~~~~~~~~~--------k~ 460 (1200)
T KOG0964|consen 393 KWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEE----IKELESSINETKGRMEEFDAENTEL--------KR 460 (1200)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHhhhhhHHHHHHHHHHHH--------HH
Confidence 34444444455566666666666666777666666665553 2233322222222222221111111 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 003781 605 KLFEFEKKFEESAANEERQLLEKVAELLASSNARKKQLVQMA 646 (796)
Q Consensus 605 ~l~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~q~~~~~~~ 646 (796)
.+.+.... +....+|+++|-..|..+.......|..+-.+-
T Consensus 461 ~~del~~~-Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~ 501 (1200)
T KOG0964|consen 461 ELDELQDK-RKELWREEKKLRSLIANLEEDLSRAEKNLRATM 501 (1200)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11111111 345566777777777777776666665554433
No 142
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=82.19 E-value=90 Score=34.82 Aligned_cols=9 Identities=22% Similarity=0.084 Sum_probs=4.5
Q ss_pred HHHHHHHHH
Q 003781 182 TLGRVINAL 190 (796)
Q Consensus 182 aLg~VI~aL 190 (796)
.|+.|+.|+
T Consensus 55 sl~~~~~A~ 63 (325)
T PF08317_consen 55 SLEDYVVAG 63 (325)
T ss_pred CHHHHHHHh
Confidence 345555554
No 143
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=82.18 E-value=50 Score=31.93 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 392 IELRTELENAASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILHKTVATSV 448 (796)
Q Consensus 392 ~~l~~~l~~~~~~v~~L~~kl~rk~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (796)
..++..+......+..|..+.+.-...-...+..|..=+..+...+..+..++....
T Consensus 62 ~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 62 QQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666777777776665555666777788878888888888887777654
No 144
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=82.17 E-value=93 Score=34.99 Aligned_cols=20 Identities=35% Similarity=0.338 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003781 262 MIKDLYSEIDRLKQEVYAAR 281 (796)
Q Consensus 262 lik~l~~EI~~Lk~el~~~r 281 (796)
-+..+..++.+++.++..++
T Consensus 82 ~l~~l~~~~~~l~a~~~~l~ 101 (423)
T TIGR01843 82 DAAELESQVLRLEAEVARLR 101 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777766544
No 145
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=81.93 E-value=0.44 Score=59.59 Aligned_cols=12 Identities=42% Similarity=0.545 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH
Q 003781 640 KQLVQMAVQDLR 651 (796)
Q Consensus 640 ~~~~~~~~~~~~ 651 (796)
..++...+..++
T Consensus 491 ~lRl~~el~~~r 502 (859)
T PF01576_consen 491 KLRLQVELQQLR 502 (859)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 344555555554
No 146
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=81.64 E-value=1.7e+02 Score=37.63 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=31.6
Q ss_pred cccccCCCcceeeeeecCCCCCChHhHHHHHHHHHHhccCcccc
Q 003781 208 LRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNKP 251 (796)
Q Consensus 208 LqDSLGGnskT~mIatVSPs~~~~eETlsTL~fA~RAk~Ikn~p 251 (796)
++-+.+|++-+.+|-.=.-+...|.+.|-.+.+--+|+|+--.+
T Consensus 88 F~R~I~~G~seY~IDne~VT~eeY~~eLekinIlVkARNFLVFQ 131 (1141)
T KOG0018|consen 88 FTRAINGGTSEYMIDNEIVTREEYLEELEKINILVKARNFLVFQ 131 (1141)
T ss_pred hhhhhcCCceeEEEcceeccHHHHHHHHhhcceeeeeeeEEEec
Confidence 33445566778888777777777888888888888888865443
No 147
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=80.67 E-value=1.1e+02 Score=34.98 Aligned_cols=16 Identities=31% Similarity=0.310 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHhhC
Q 003781 178 KSLLTLGRVINALVEH 193 (796)
Q Consensus 178 kSLlaLg~VI~aL~~~ 193 (796)
-+.+.||.||..+.+.
T Consensus 7 ~~vlvLgGVIA~~gD~ 22 (499)
T COG4372 7 PFVLVLGGVIAYAGDT 22 (499)
T ss_pred HHHHHHHhHHHHHhhH
Confidence 4678899999999884
No 148
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=80.59 E-value=77 Score=33.00 Aligned_cols=15 Identities=7% Similarity=-0.035 Sum_probs=5.8
Q ss_pred HHhhHHHHHHHHHHH
Q 003781 486 MYGSGIKALDGIAGE 500 (796)
Q Consensus 486 ~~~~~~e~i~~~~~~ 500 (796)
.+....++|..+...
T Consensus 172 ~~~~l~~ei~~L~~k 186 (194)
T PF15619_consen 172 EVKSLQEEIQRLNQK 186 (194)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333344444333
No 149
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.23 E-value=1.7e+02 Score=36.66 Aligned_cols=8 Identities=25% Similarity=0.389 Sum_probs=4.7
Q ss_pred CCCCCCCC
Q 003781 193 HSGHVPYR 200 (796)
Q Consensus 193 ~~~hIPYR 200 (796)
.+++|||=
T Consensus 522 ~~s~iq~L 529 (970)
T KOG0946|consen 522 ESSIIQYL 529 (970)
T ss_pred cccHHHHH
Confidence 34577773
No 150
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.01 E-value=1.9e+02 Score=37.10 Aligned_cols=13 Identities=31% Similarity=0.452 Sum_probs=7.8
Q ss_pred HhccCcccccccc
Q 003781 243 RAKNIKNKPEINQ 255 (796)
Q Consensus 243 RAk~Ikn~p~vN~ 255 (796)
-||.|--.|.|+.
T Consensus 633 ~AKkVaf~~~i~~ 645 (1174)
T KOG0933|consen 633 VAKKVAFDPKIRT 645 (1174)
T ss_pred HHHHhhccccccc
Confidence 3666666666654
No 151
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=79.96 E-value=89 Score=33.35 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003781 392 IELRTELENAASDVSNLFAKIE 413 (796)
Q Consensus 392 ~~l~~~l~~~~~~v~~L~~kl~ 413 (796)
..+...++.+...+..|+..+.
T Consensus 88 ~~~~~~l~~L~~ri~~L~~~i~ 109 (247)
T PF06705_consen 88 EQLQSRLDSLNDRIEALEEEIQ 109 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554
No 152
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=79.45 E-value=1.7e+02 Score=36.38 Aligned_cols=8 Identities=50% Similarity=0.845 Sum_probs=4.7
Q ss_pred cccccccC
Q 003781 206 RLLRDSLG 213 (796)
Q Consensus 206 rLLqDSLG 213 (796)
.+++|.||
T Consensus 446 ~il~D~lg 453 (717)
T PF10168_consen 446 AILSDVLG 453 (717)
T ss_pred EEecCCCC
Confidence 45677744
No 153
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=79.26 E-value=37 Score=33.77 Aligned_cols=105 Identities=21% Similarity=0.352 Sum_probs=65.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHHHHHhHhhhhHhHHHhhh---------hh
Q 003781 602 NDQKLFEFEKKFEESAANEERQLLEKVAELLASSNARK----KQLVQMAVQDLRESASSRTSQLQKEMS---------TM 668 (796)
Q Consensus 602 ~~~~l~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~q----~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 668 (796)
....+.-|.++|++..-..+-..|.++...+....+.. .......+.++.+.+...+.....-.. ..
T Consensus 19 IqgEI~~FvkEFE~KRgdRE~~~L~~~~~~~~e~~e~~lp~~~~~~~~~L~~l~~~l~~a~~~~~~l~~~e~~~~~~~~l 98 (145)
T PF14942_consen 19 IQGEIRYFVKEFEEKRGDREVRVLENLTEMISETNEHILPRCIELMQQNLEQLLERLQAANSMCSRLQQKEQEKQKDDYL 98 (145)
T ss_pred HHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34457777888876666666677777777766655443 333444555555554444443332222 25
Q ss_pred hhhhhhHHHhHHHHHHH-------hhhhhhhhhhhHhhhhhcHHH
Q 003781 669 QDSTFSVKAEWSAHMNK-------TESHYLEDTSAVENGKKDLEV 706 (796)
Q Consensus 669 ~~~~~~~~~~~~~~~~~-------~~~~~~e~~~~~~~~~~~~~~ 706 (796)
+......+..|+.|+.. .+..|.+.+.-..++-++|+.
T Consensus 99 ~~~~~~~~~~we~f~~e~~~~~~~vdee~~~~~~~l~e~Y~~~~~ 143 (145)
T PF14942_consen 99 QANREQRKQEWEEFMKEQQQKKQRVDEEFREKEERLKEQYSEMEK 143 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66677889999999985 666777777777777766653
No 154
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=79.16 E-value=86 Score=32.72 Aligned_cols=26 Identities=38% Similarity=0.553 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 335 TAELSEKLEKTEKKLEETEHALSDLE 360 (796)
Q Consensus 335 ~~~l~~~l~~~~~~l~~~~~~L~~le 360 (796)
...|..-|...+.+..+++..+...+
T Consensus 57 N~~L~epL~~a~~e~~eL~k~L~~y~ 82 (201)
T PF13851_consen 57 NKRLSEPLKKAEEEVEELRKQLKNYE 82 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555443
No 155
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=79.15 E-value=2.1e+02 Score=37.29 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 003781 299 EKKAMAEKIERMELE 313 (796)
Q Consensus 299 e~k~~~~~ie~le~~ 313 (796)
+.+++.+.++.+...
T Consensus 466 ~~keL~e~i~~lk~~ 480 (1317)
T KOG0612|consen 466 MDKELEETIEKLKSE 480 (1317)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 156
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=79.04 E-value=1.5e+02 Score=35.32 Aligned_cols=33 Identities=6% Similarity=0.124 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhHhHHHhhhh
Q 003781 635 SNARKKQLVQMAVQDLRESASSRTSQLQKEMST 667 (796)
Q Consensus 635 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (796)
-.+-|...+..++..++..+.+........+..
T Consensus 373 rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~ 405 (531)
T PF15450_consen 373 RLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQ 405 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666555554444444443
No 157
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=78.44 E-value=2.3e+02 Score=37.32 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=10.6
Q ss_pred hhhhHhhhhhcHHHHHHHHH
Q 003781 693 DTSAVENGKKDLEVVLQNCL 712 (796)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~ 712 (796)
.+.-...+...++..|+.|-
T Consensus 772 ~I~~l~~~i~~L~~~l~~ie 791 (1201)
T PF12128_consen 772 RIQQLKQEIEQLEKELKRIE 791 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666664443
No 158
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=78.28 E-value=1e+02 Score=33.05 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003781 263 IKDLYSEIDRLKQEVYAA 280 (796)
Q Consensus 263 ik~l~~EI~~Lk~el~~~ 280 (796)
+-+++.++.+++.+...+
T Consensus 22 L~~~~~~l~~~~~~~~~l 39 (302)
T PF10186_consen 22 LLELRSELQQLKEENEEL 39 (302)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555555444333
No 159
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=77.80 E-value=98 Score=33.92 Aligned_cols=12 Identities=8% Similarity=0.252 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 003781 402 ASDVSNLFAKIE 413 (796)
Q Consensus 402 ~~~v~~L~~kl~ 413 (796)
..++..+...++
T Consensus 115 eqelkr~KsELE 126 (307)
T PF10481_consen 115 EQELKRCKSELE 126 (307)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 160
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=77.69 E-value=2.2e+02 Score=36.68 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhhhhhHhHHHHHHHHHhhhhh
Q 003781 705 EVVLQNCLKQAKMGAQQWRTAQESLLNLEKN 735 (796)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 735 (796)
...+..-+.|.+.+.+.|+..+.-...|...
T Consensus 866 ~~eik~ei~rlk~~i~~~ee~~~~~~e~~~~ 896 (1074)
T KOG0250|consen 866 VAEIKREIKRLKRQIQMCEESLGELEELHRG 896 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4666777888888888888888755555544
No 161
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=77.68 E-value=1.4e+02 Score=34.45 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=16.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 526 LFKGIASEADSLLNDLQSSLYKQEEKLTA 554 (796)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 554 (796)
.+..=+.++..|+.+|+..+....+....
T Consensus 245 Vl~~Da~El~~V~~el~~~~~~~~~~~~~ 273 (412)
T PF04108_consen 245 VLENDAQELPDVVKELQERLDEMENNEER 273 (412)
T ss_pred HHHcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445556666666666665555444
No 162
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=77.24 E-value=55 Score=36.50 Aligned_cols=24 Identities=46% Similarity=0.639 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 337 ELSEKLEKTEKKLEETEHALSDLE 360 (796)
Q Consensus 337 ~l~~~l~~~~~~l~~~~~~L~~le 360 (796)
++.++|..++.+..++..++..++
T Consensus 61 ~l~~eL~~LE~e~~~l~~el~~le 84 (314)
T PF04111_consen 61 ELLQELEELEKEREELDQELEELE 84 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444333
No 163
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=77.14 E-value=95 Score=33.20 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 334 LTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELEN 400 (796)
Q Consensus 334 ~~~~l~~~l~~~~~~l~~~~~~L~~le~~l~~~~~~l~e~~~~i~~l~~~e~~l~~~~~~l~~~l~~ 400 (796)
+..++..++..+..+++.++.....++..+...+..+.+.+..+.....+...+......+...|+.
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555544444444444444444444444444544444444433344444433
No 164
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=77.04 E-value=2 Score=52.79 Aligned_cols=17 Identities=12% Similarity=0.126 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHHHHH
Q 003781 760 LLCQLRSKMQMLQTAIF 776 (796)
Q Consensus 760 ~~~~~~~~~~~~~~~~~ 776 (796)
.+..|..+...|+.-+.
T Consensus 511 ~~~~Le~e~~~L~~~~~ 527 (722)
T PF05557_consen 511 EIEELERENERLRQELE 527 (722)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445544444444433
No 165
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=76.97 E-value=2e+02 Score=35.88 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 003781 605 KLFEFEKKFEESAANEERQLLEKVAELLASSNARK 639 (796)
Q Consensus 605 ~l~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~q 639 (796)
+++.|+- .++.++--|...++|.+.||+--.+.+
T Consensus 439 Q~s~fk~-Lke~aegsrrraIeQcnemv~rir~l~ 472 (1265)
T KOG0976|consen 439 QLSNFKV-LKEHAEGSRRRAIEQCNEMVDRIRALM 472 (1265)
T ss_pred HHhhHHH-HHHhhhhhHhhHHHHHHHHHHHHHHHh
Confidence 3444433 234555556666666666665444433
No 166
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=76.85 E-value=96 Score=34.06 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 003781 352 TEHALSDLEEKHRQANATIKEKDFLIANL 380 (796)
Q Consensus 352 ~~~~L~~le~~l~~~~~~l~e~~~~i~~l 380 (796)
.++++..|+..+..++..|.+++.=|+++
T Consensus 122 ARkEIkQLkQvieTmrssL~ekDkGiQKY 150 (305)
T PF15290_consen 122 ARKEIKQLKQVIETMRSSLAEKDKGIQKY 150 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhchhhhhHHHH
Confidence 33344444444444445555555544444
No 167
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=76.27 E-value=0.83 Score=57.15 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=0.0
Q ss_pred hhhhhhhhhHhhhhhcHHHHHHHHHHhhhhhhHhHHHH
Q 003781 688 SHYLEDTSAVENGKKDLEVVLQNCLKQAKMGAQQWRTA 725 (796)
Q Consensus 688 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (796)
....+.+.+.......|..-+.++-..-..+...-+.+
T Consensus 598 ~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~a 635 (859)
T PF01576_consen 598 EELREQLAVSERRLRALQAELEELREALEQAERARKQA 635 (859)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555566666666655544433333333333
No 168
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=76.18 E-value=1.7e+02 Score=34.60 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 003781 451 QEQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSGIKALDGIAGELDG 503 (796)
Q Consensus 451 q~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~e~i~~~~~~~~~ 503 (796)
..++|..+...++.......+....|+++|..|.+.-...-.+-..|...++.
T Consensus 145 l~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkg 197 (475)
T PRK10361 145 LREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALKG 197 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34566666666666666777777788888888877666555556666666654
No 169
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=75.65 E-value=2.8e+02 Score=36.71 Aligned_cols=26 Identities=15% Similarity=0.429 Sum_probs=16.2
Q ss_pred hhhHhHHHHHHHHHhhhhhhHHHHHHHHHhhhhhHH
Q 003781 717 MGAQQWRTAQESLLNLEKNNVAAVDSIVRYEWKPIR 752 (796)
Q Consensus 717 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 752 (796)
.+--+||... ...++.+|++-|.+..
T Consensus 1116 ~Aim~fHs~K----------MeeiN~iI~elW~~tY 1141 (1294)
T KOG0962|consen 1116 KAIMQFHSMK----------MEEINRIIRELWRKTY 1141 (1294)
T ss_pred HHHHHHHHHH----------HHHHHHHHHHHHHhcc
Confidence 3344676654 3677778887776654
No 170
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=75.54 E-value=2.2e+02 Score=35.48 Aligned_cols=20 Identities=30% Similarity=0.689 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 003781 264 KDLYSEIDRLKQEVYAAREK 283 (796)
Q Consensus 264 k~l~~EI~~Lk~el~~~r~k 283 (796)
..|..+++.||.|+..+++.
T Consensus 432 ~~Le~elekLk~eilKAk~s 451 (762)
T PLN03229 432 RELEGEVEKLKEQILKAKES 451 (762)
T ss_pred ccHHHHHHHHHHHHHhcccc
Confidence 46888999999999887643
No 171
>PLN03188 kinesin-12 family protein; Provisional
Probab=75.51 E-value=2.7e+02 Score=36.62 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHH
Q 003781 395 RTELENAASDVSNLFAKIERKD-KIEEGNRILI 426 (796)
Q Consensus 395 ~~~l~~~~~~v~~L~~kl~rk~-~~~~~n~~~~ 426 (796)
..++..+..+++.|..+-++.+ -+..+|+.+.
T Consensus 1154 ~~f~~alaae~s~l~~ereker~~~~~enk~l~ 1186 (1320)
T PLN03188 1154 SKFINALAAEISALKVEREKERRYLRDENKSLQ 1186 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3455566666777765533322 2345555543
No 172
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=75.48 E-value=2.5e+02 Score=36.20 Aligned_cols=73 Identities=14% Similarity=0.228 Sum_probs=37.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--HHHHHHHHHHHHHHHHHHHhhHHH
Q 003781 417 KIEEGNRILIQMFQSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVST--KAEATEELRGRLGKLKAMYGSGIK 492 (796)
Q Consensus 417 ~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~k~~~~~~~e 492 (796)
++..-|+.++..+-......+..++.. .| ..|...++.--+.+.....+ .+.....+++.|.++++.+.....
T Consensus 1245 ~LQ~iNQ~LV~~LIn~iR~slnqme~~--tf-~~q~~eiq~n~~ll~~L~~tlD~S~~a~Kqk~di~kl~~~lv~kQK 1319 (1439)
T PF12252_consen 1245 QLQKINQNLVKALINTIRVSLNQMEVK--TF-EEQEKEIQQNLQLLDKLEKTLDDSDTAQKQKEDIVKLNDFLVEKQK 1319 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh--hh-hhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566677666655555555555422 22 23333333222222222222 344556788888888887664443
No 173
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=74.78 E-value=1.4e+02 Score=32.82 Aligned_cols=25 Identities=12% Similarity=0.347 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHh
Q 003781 478 GRLGKLKAMYGSGIKALDGIAGELD 502 (796)
Q Consensus 478 ~~~~~~k~~~~~~~e~i~~~~~~~~ 502 (796)
..+..++..|+.-+++-+.+-.+++
T Consensus 162 sk~e~L~ekynkeveerkrle~e~k 186 (307)
T PF10481_consen 162 SKYEELQEKYNKEVEERKRLEAEVK 186 (307)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444455555555555555544443
No 174
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=74.70 E-value=1.5e+02 Score=33.15 Aligned_cols=13 Identities=38% Similarity=0.424 Sum_probs=8.9
Q ss_pred HhHHHHHHHHHHh
Q 003781 232 EETLSTLDYAHRA 244 (796)
Q Consensus 232 eETlsTL~fA~RA 244 (796)
+|.=.-|.+|.|+
T Consensus 72 eEkerDLelaA~i 84 (306)
T PF04849_consen 72 EEKERDLELAARI 84 (306)
T ss_pred HHHhhhHHHHHHH
Confidence 4555667788776
No 175
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=73.76 E-value=1.3e+02 Score=32.25 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=5.5
Q ss_pred HHhHhHHHHHHHHH
Q 003781 367 NATIKEKDFLIANL 380 (796)
Q Consensus 367 ~~~l~e~~~~i~~l 380 (796)
...+.+.+..|..+
T Consensus 81 e~e~~e~~~~i~~l 94 (246)
T PF00769_consen 81 EQELREAEAEIARL 94 (246)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 176
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=73.47 E-value=1.2e+02 Score=31.60 Aligned_cols=49 Identities=22% Similarity=0.299 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 308 ERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHAL 356 (796)
Q Consensus 308 e~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~L 356 (796)
+.++.....+..+...++...+........|..++..++..+..++..+
T Consensus 11 ~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal 59 (193)
T PF14662_consen 11 EDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQAL 59 (193)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333443333333333344444444444444443333
No 177
>PRK10884 SH3 domain-containing protein; Provisional
Probab=73.00 E-value=62 Score=33.98 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 003781 259 KSAMIKDLYSEIDRLKQEVYAAR 281 (796)
Q Consensus 259 ~~~lik~l~~EI~~Lk~el~~~r 281 (796)
....+..+..|+..|+.++...+
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777766544
No 178
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=72.90 E-value=1.3e+02 Score=31.72 Aligned_cols=30 Identities=20% Similarity=0.374 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 392 IELRTELENAASDVSNLFAKIERKDKIEEG 421 (796)
Q Consensus 392 ~~l~~~l~~~~~~v~~L~~kl~rk~~~~~~ 421 (796)
..+...|......++.||.++++...+-..
T Consensus 79 dq~~~dL~s~E~sfsdl~~ryek~K~vi~~ 108 (207)
T PF05010_consen 79 DQAYADLNSLEKSFSDLHKRYEKQKEVIEG 108 (207)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 445566666667777888888766655433
No 179
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=72.54 E-value=1.1e+02 Score=30.48 Aligned_cols=11 Identities=36% Similarity=0.579 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 003781 305 EKIERMELESE 315 (796)
Q Consensus 305 ~~ie~le~~l~ 315 (796)
..|..++.+++
T Consensus 24 ~~v~~LEreLe 34 (140)
T PF10473_consen 24 DHVESLERELE 34 (140)
T ss_pred HHHHHHHHHHH
Confidence 33333433333
No 180
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=72.33 E-value=1.4e+02 Score=31.84 Aligned_cols=36 Identities=36% Similarity=0.485 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 003781 337 ELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKE 372 (796)
Q Consensus 337 ~l~~~l~~~~~~l~~~~~~L~~le~~l~~~~~~l~e 372 (796)
+++.+++.+.++..++-+.+.+++.++...+.+++.
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~ 174 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKR 174 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433
No 181
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=72.18 E-value=1.5e+02 Score=31.97 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003781 263 IKDLYSEIDRLKQEVYAA 280 (796)
Q Consensus 263 ik~l~~EI~~Lk~el~~~ 280 (796)
+..+...++.+..++...
T Consensus 19 ~~~l~~~~e~~~~~L~~~ 36 (264)
T PF06008_consen 19 PYKLLSSIEDLTNQLRSY 36 (264)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555666666665543
No 182
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=71.40 E-value=1.5e+02 Score=31.84 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003781 390 RAIELRTELENAASDVSNLFAKI 412 (796)
Q Consensus 390 ~~~~l~~~l~~~~~~v~~L~~kl 412 (796)
.+..+...+......|..+-.++
T Consensus 88 ~a~~L~~~i~~l~~~i~~l~~~~ 110 (264)
T PF06008_consen 88 RAQDLEQFIQNLQDNIQELIEQV 110 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 183
>PRK10869 recombination and repair protein; Provisional
Probab=71.34 E-value=2.4e+02 Score=34.01 Aligned_cols=25 Identities=12% Similarity=-0.105 Sum_probs=11.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhh
Q 003781 479 RLGKLKAMYGSGIKALDGIAGELDG 503 (796)
Q Consensus 479 ~~~~~k~~~~~~~e~i~~~~~~~~~ 503 (796)
.+.+++.-|...++.+-..++.++.
T Consensus 307 ~l~~L~rKyg~~~~~~~~~~~~l~~ 331 (553)
T PRK10869 307 KQISLARKHHVSPEELPQHHQQLLE 331 (553)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3344444455455555444444433
No 184
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.81 E-value=2.4e+02 Score=33.88 Aligned_cols=66 Identities=26% Similarity=0.404 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCcCCccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 260 SAMIKDLYSEIDRLKQEVYAAREKNGIYIPRDRY-LQEEAEKKAMAEKIERMELESESKDKQLMELQELY 328 (796)
Q Consensus 260 ~~lik~l~~EI~~Lk~el~~~r~k~gv~~~~~~~-~~~e~e~k~~~~~ie~le~~l~~~~~~l~~l~~~~ 328 (796)
..-+..|+.||++|-.++..+...- +....| +..-.++..++.+.+.|+...+....++..+++.+
T Consensus 7 eq~ve~lr~eierLT~el~q~t~e~---~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal 73 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTTEEK---IQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEAL 73 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446789999999999987665421 000111 11123344555566666666665555555544433
No 185
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=70.78 E-value=3.1e+02 Score=35.20 Aligned_cols=287 Identities=14% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 003781 296 EEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDF 375 (796)
Q Consensus 296 ~e~e~k~~~~~ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~L~~le~~l~~~~~~l~e~~~ 375 (796)
.+.-...+.+.+..+..+++.+..++.++++........+.....++....++.......+.+++.....++.....-..
T Consensus 627 l~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~~~~~l~~ 706 (1072)
T KOG0979|consen 627 LEELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIENLVVDLDR 706 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 376 LIANLLKSEKALVERAIELRTELENAASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILHKTVATSVTQQEQQL 455 (796)
Q Consensus 376 ~i~~l~~~e~~l~~~~~~l~~~l~~~~~~v~~L~~kl~rk~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~ 455 (796)
.-..+...+..+..+...++...-...-.....+..+.-+...+..--........+....+......+. +++.-...+
T Consensus 707 qkee~~~~~~~~I~~~~~~~~~~~~~~~~~~~k~~e~~i~~~~~~~~~~~s~~~~iea~~~i~~~e~~i~-~~~~~~~~l 785 (1072)
T KOG0979|consen 707 QEEEYAASEAKKILDTEDMRIQSIRWHLELTDKHKEIGIKEKNESSYMARSNKNNIEAERKIEKLEDNIS-FLEAREDLL 785 (1072)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHH
Q ss_pred HHHHHHHHHhHhhHH--HHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHhhhHHhHHhhHHHHHHHHHHHHHHH
Q 003781 456 KDMEEDMQSFVSTKA--EATEELRGRLGKLKA-------MYGSGIKALDGIAGELDGNSRSTFGDLNSEVSKHSHALEDL 526 (796)
Q Consensus 456 ~~~~~~~~~~~~~~~--~~~~~l~~~~~~~k~-------~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (796)
+.--+.+..+..... ..+.-....+..+.. .+...++...++..+++.....-+.....+.......+..
T Consensus 786 k~a~~~~k~~a~~~~~~~~~~t~~~~~~s~~~~~~ek~~~~~~e~~e~p~t~~eld~~I~~e~t~~~~~~n~ne~~vq~- 864 (1072)
T KOG0979|consen 786 KTALEDKKKEAAEKRKEQSLQTLKREIMSPATNKIEKSLVLMKELAEEPTTMDELDQAITDELTRALKFENVNEDAVQQ- 864 (1072)
T ss_pred HHHHHHHHHHHHhcccchhHHHhhhccccccccchhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHhcCChHHHHH-
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHhHhhHH
Q 003781 527 FKGIASEADSLLNDLQSSLYKQEEKLTAYAQQQREAHS-RAVENARSVSKVTVNFFKTLD 585 (796)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~f~~~~~ 585 (796)
|.....+...+-..+...-.+...-.+..-. .++.|. +-=+....++..-..||+.+.
T Consensus 865 y~~r~~el~~l~~~~~~~~~~le~i~~kl~~-~ke~w~~~le~~V~~In~~Fs~~F~~mg 923 (1072)
T KOG0979|consen 865 YEVREDELRELETKLEKLSEDLERIKDKLSD-VKEVWLPKLEEMVEQINERFSQLFSSMG 923 (1072)
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 186
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=70.22 E-value=2.5e+02 Score=33.84 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003781 264 KDLYSEIDRLKQEVYAAR 281 (796)
Q Consensus 264 k~l~~EI~~Lk~el~~~r 281 (796)
++++.+|.+|........
T Consensus 21 k~~~k~i~~Le~~k~~l~ 38 (560)
T PF06160_consen 21 KRYYKEIDELEERKNELM 38 (560)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567777887777655543
No 187
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=70.02 E-value=62 Score=40.03 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Q 003781 262 MIKDLYSEIDRLKQEVYAAREKN 284 (796)
Q Consensus 262 lik~l~~EI~~Lk~el~~~r~k~ 284 (796)
.++.|..+..+|..++..+|...
T Consensus 258 ~i~~LE~en~~l~~Elk~Lr~~~ 280 (722)
T PF05557_consen 258 HIRELEKENRRLREELKHLRQSQ 280 (722)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777666543
No 188
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=69.59 E-value=2.5e+02 Score=33.67 Aligned_cols=9 Identities=11% Similarity=0.128 Sum_probs=4.6
Q ss_pred HHHHHHHHH
Q 003781 95 ADEIYKILE 103 (796)
Q Consensus 95 ~~e~~~lL~ 103 (796)
.-+++.++.
T Consensus 38 ll~al~~~~ 46 (563)
T TIGR00634 38 IIDALSLLG 46 (563)
T ss_pred HHHHHHHHh
Confidence 345555554
No 189
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=69.27 E-value=2e+02 Score=32.34 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 003781 267 YSEIDRLKQEVY 278 (796)
Q Consensus 267 ~~EI~~Lk~el~ 278 (796)
..++..++.++.
T Consensus 80 ~~~l~~l~~~~~ 91 (423)
T TIGR01843 80 EADAAELESQVL 91 (423)
T ss_pred hhHHHHHHHHHH
Confidence 334444444443
No 190
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=68.62 E-value=1.2e+02 Score=29.38 Aligned_cols=37 Identities=22% Similarity=0.150 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 311 ELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEK 347 (796)
Q Consensus 311 e~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~ 347 (796)
...+..++-++..++..+.......+.+..++-++..
T Consensus 22 ~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~ 58 (120)
T PF12325_consen 22 QSQLRRLEGELASLQEELARLEAERDELREEIVKLME 58 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444444433
No 191
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=68.47 E-value=3.8e+02 Score=35.22 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003781 297 EAEKKAMAEKIERMELESESK 317 (796)
Q Consensus 297 e~e~k~~~~~ie~le~~l~~~ 317 (796)
+.|...+..++..++.++...
T Consensus 179 qae~~~l~~~~~~l~~~l~s~ 199 (1109)
T PRK10929 179 QAESAALKALVDELELAQLSA 199 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 444444455555555444433
No 192
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=68.21 E-value=2.6e+02 Score=33.33 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCC
Q 003781 262 MIKDLYSEIDRLKQEVYAAREKNG 285 (796)
Q Consensus 262 lik~l~~EI~~Lk~el~~~r~k~g 285 (796)
+...|+..+..++.+...+|.+-.
T Consensus 160 ~~EaL~ekLk~~~een~~lr~k~~ 183 (596)
T KOG4360|consen 160 LLEALQEKLKPLEEENTQLRSKAM 183 (596)
T ss_pred HHHHHHhhcCChHHHHHHHHHHHH
Confidence 344556666667777777776543
No 193
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=68.14 E-value=2.7e+02 Score=33.43 Aligned_cols=9 Identities=33% Similarity=0.549 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 003781 473 TEELRGRLG 481 (796)
Q Consensus 473 ~~~l~~~~~ 481 (796)
+.++..++.
T Consensus 303 L~ele~RL~ 311 (563)
T TIGR00634 303 LNEIEERLA 311 (563)
T ss_pred HHHHHHHHH
Confidence 444444443
No 194
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=67.58 E-value=1.6e+02 Score=30.47 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003781 393 ELRTELENAASDVSNLFAKIERK 415 (796)
Q Consensus 393 ~l~~~l~~~~~~v~~L~~kl~rk 415 (796)
.|...+...+.+...+..++..+
T Consensus 99 ~L~~dl~klt~~~~~l~~eL~~k 121 (182)
T PF15035_consen 99 ALQEDLQKLTQDWERLRDELEQK 121 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555544433
No 195
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=67.35 E-value=1.9e+02 Score=31.27 Aligned_cols=20 Identities=5% Similarity=0.365 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhHHHHHHHHH
Q 003781 412 IERKDKIEEGNRILIQMFQS 431 (796)
Q Consensus 412 l~rk~~~~~~n~~~~~~~~~ 431 (796)
+.+-..+..+...++..++.
T Consensus 150 l~~l~~l~~eR~~~~~~lk~ 169 (296)
T PF13949_consen 150 LNKLEELKKEREELLEQLKE 169 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444555555443
No 196
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=66.81 E-value=1.1e+02 Score=28.23 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=10.8
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHH
Q 003781 363 HRQANATIKEKDFLIANLLKSEKAL 387 (796)
Q Consensus 363 l~~~~~~l~e~~~~i~~l~~~e~~l 387 (796)
.+.++..+......|..+...|..+
T Consensus 61 ~k~L~~~~~Ks~~~i~~L~~~E~~~ 85 (96)
T PF08647_consen 61 MKKLNTQLSKSSELIEQLKETEKEF 85 (96)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3333333333444444444444444
No 197
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=65.74 E-value=1.8e+02 Score=30.51 Aligned_cols=68 Identities=22% Similarity=0.284 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 003781 304 AEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIK 371 (796)
Q Consensus 304 ~~~ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~L~~le~~l~~~~~~l~ 371 (796)
.++++.++.++..-..--.+--..|+.....+.-....|+.+++..+-......++.++++.+...++
T Consensus 59 EE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk 126 (205)
T KOG1003|consen 59 EEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLK 126 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Confidence 33444444444333222223333444444444445555555555555555555555555554444333
No 198
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=65.68 E-value=3.2e+02 Score=33.40 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=6.6
Q ss_pred EEEEEEEEEc-Cceeec
Q 003781 39 MKVTFLELYN-EEISDL 54 (796)
Q Consensus 39 V~vS~lEIYN-E~V~DL 54 (796)
+.+.-+-.|. ....|+
T Consensus 6 l~l~nf~~~~~~~~~~~ 22 (650)
T TIGR03185 6 LTLENFGPYRGRQTFDL 22 (650)
T ss_pred EEEeceEEEcCCceeee
Confidence 3333333443 335554
No 199
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=65.28 E-value=2.1e+02 Score=32.62 Aligned_cols=57 Identities=23% Similarity=0.347 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 003781 318 DKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKD 374 (796)
Q Consensus 318 ~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~L~~le~~l~~~~~~l~e~~ 374 (796)
..++..+-..|...+.+..+.+.+......-+.+....|.++.+++.+.+..++++.
T Consensus 265 N~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg 321 (359)
T PF10498_consen 265 NNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERG 321 (359)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556666666666666666666666666666666667777777777666666653
No 200
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=64.75 E-value=2.5e+02 Score=31.77 Aligned_cols=20 Identities=25% Similarity=0.194 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003781 392 IELRTELENAASDVSNLFAK 411 (796)
Q Consensus 392 ~~l~~~l~~~~~~v~~L~~k 411 (796)
..|..+|.+.......|.++
T Consensus 165 q~LnrELaE~layqq~L~~e 184 (401)
T PF06785_consen 165 QTLNRELAEALAYQQELNDE 184 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 201
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=64.38 E-value=3.9e+02 Score=33.92 Aligned_cols=35 Identities=23% Similarity=0.134 Sum_probs=24.9
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHhhhhhHHHHhHh
Q 003781 723 RTAQESLLNLEKNNVAAVDSIVRYEWKPIRTYMLG 757 (796)
Q Consensus 723 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 757 (796)
..+...|-+|-..-..+++.-|+.+...|+..+..
T Consensus 739 di~~e~l~~lld~ema~t~aAI~~A~~rie~~~~K 773 (980)
T KOG0980|consen 739 DIDQELLGNLLDIEMAETDAAIEDAVSRIEAIAAK 773 (980)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555567777777888888888887777776653
No 202
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=64.04 E-value=1.7e+02 Score=32.66 Aligned_cols=89 Identities=17% Similarity=0.269 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 316 SKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELR 395 (796)
Q Consensus 316 ~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~L~~le~~l~~~~~~l~e~~~~i~~l~~~e~~l~~~~~~l~ 395 (796)
.+...+.++++.|..-....+.|..+-..+.=+++-++..|.++++.+.+++..+.++.... ..+.
T Consensus 81 ~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~el--------------Er~K 146 (302)
T PF09738_consen 81 DLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIREL--------------ERQK 146 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHH
Confidence 33456677777787777777777777777777777777777777777776666554432221 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003781 396 TELENAASDVSNLFAKIERKDKI 418 (796)
Q Consensus 396 ~~l~~~~~~v~~L~~kl~rk~~~ 418 (796)
.....+..+++.|...|..+..+
T Consensus 147 ~~~d~L~~e~~~Lre~L~~rdel 169 (302)
T PF09738_consen 147 RAHDSLREELDELREQLKQRDEL 169 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555666666554444
No 203
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=63.79 E-value=1.7e+02 Score=29.54 Aligned_cols=96 Identities=21% Similarity=0.247 Sum_probs=50.5
Q ss_pred CCcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 285 GIYIPRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHR 364 (796)
Q Consensus 285 gv~~~~~~~~~~e~e~k~~~~~ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~L~~le~~l~ 364 (796)
|..+....|.+...+...+ ...++.+..++..++..+....+...-+++++.....++...+..+.+.+..+.
T Consensus 36 ge~L~~iDFeqLkien~~l-------~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~ 108 (177)
T PF13870_consen 36 GEGLHLIDFEQLKIENQQL-------NEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELA 108 (177)
T ss_pred cCcccHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455544444444 444445556666666666666665666666666666666666666666555555
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHH
Q 003781 365 QANATIKEKDFLIANLLKSEKAL 387 (796)
Q Consensus 365 ~~~~~l~e~~~~i~~l~~~e~~l 387 (796)
.....+..-......+......+
T Consensus 109 ~~r~~l~~~k~~r~k~~~~~~~l 131 (177)
T PF13870_consen 109 KLREELYRVKKERDKLRKQNKKL 131 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544444333333333333333
No 204
>PRK11281 hypothetical protein; Provisional
Probab=63.31 E-value=4.7e+02 Score=34.44 Aligned_cols=30 Identities=23% Similarity=0.190 Sum_probs=14.1
Q ss_pred hhcHHHHHHHHHHhhhh--hhHhHHHHHHHHH
Q 003781 701 KKDLEVVLQNCLKQAKM--GAQQWRTAQESLL 730 (796)
Q Consensus 701 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 730 (796)
+..+...|+.+..+... +.++|++-..-+.
T Consensus 517 r~~~~~~l~~~~~~ig~~~~D~~~~T~~al~~ 548 (1113)
T PRK11281 517 KKWIKARLQKLAADIGTLKRDSQLHTPKAILI 548 (1113)
T ss_pred HHHHHHHHHHHHHhcCCcccCcccccHHHHHH
Confidence 34455555555444332 3445665554333
No 205
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=63.23 E-value=1e+02 Score=36.21 Aligned_cols=140 Identities=15% Similarity=0.205 Sum_probs=64.0
Q ss_pred cccccccccCCCcceeeeeecCCCCCChHhHHHHHHHHHHhcc-CccccccccccchHHHHHHHHHH-----HHHHHHHH
Q 003781 204 LTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKN-IKNKPEINQKMMKSAMIKDLYSE-----IDRLKQEV 277 (796)
Q Consensus 204 LTrLLqDSLGGnskT~mIatVSPs~~~~eETlsTL~fA~RAk~-Ikn~p~vN~~~~~~~lik~l~~E-----I~~Lk~el 277 (796)
|..||.-.=|-||+.-=++|..-......-+.+-|.|+.++.. ......+.++-. -....+ |++||-|+
T Consensus 511 ~~nLl~h~k~R~~qvpg~~~~a~~~~~~~~sa~EleeGk~lireltssvk~g~drE-----V~~~A~~~~~~~eRLkmEl 585 (790)
T PF07794_consen 511 LANLLRHIKGRNCQVPGVCNYAQAACYADMSAKELEEGKTLIRELTSSVKAGQDRE-----VSFQAEGIVPGIERLKMEL 585 (790)
T ss_pred HHHHHHHHhcccccCCchhhHHhhhhhcccchhhhhhhHHHHHhhcccccCCccce-----eecccccccchhhhhheee
Confidence 4556666666676655444443333333445666777766543 222222222110 012233 67777766
Q ss_pred HHHHhhCCCcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 278 YAAREKNGIYIPRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALS 357 (796)
Q Consensus 278 ~~~r~k~gv~~~~~~~~~~e~e~k~~~~~ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~L~ 357 (796)
.........|-... .-|+.+|.-++...+....+|..|.+..+...++..+|...-+..++...+.+.+|.
T Consensus 586 st~kDlekG~Aeki---------~~me~Ei~glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQgakKAVhdaK~ElA 656 (790)
T PF07794_consen 586 STSKDLEKGYAEKI---------GFMEMEIGGLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQGAKKAVHDAKVELA 656 (790)
T ss_pred ccccchhhhhHhhh---------hhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 54332221221111 122333444444444444555555555554444444555444555554444444443
No 206
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=62.76 E-value=2.5e+02 Score=34.89 Aligned_cols=77 Identities=9% Similarity=0.135 Sum_probs=40.3
Q ss_pred CCCcceeeeeecCCCCCChHhHHHHHHHHHHhccCccccccccc--cchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCC
Q 003781 213 GGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNKPEINQK--MMKSAMIKDLYSEIDRLKQEVYAAREKNGIYIP 289 (796)
Q Consensus 213 GGnskT~mIatVSPs~~~~eETlsTL~fA~RAk~Ikn~p~vN~~--~~~~~lik~l~~EI~~Lk~el~~~r~k~gv~~~ 289 (796)
++++..+-|.--+|.+.-....++++-=+.--.++..+-..... .--...+..+..++......+...|.++|+...
T Consensus 224 ~~~s~ii~Is~~~~dP~~Aa~ilN~la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~ 302 (726)
T PRK09841 224 SKESGMLELTMTGDDPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDL 302 (726)
T ss_pred CCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 34455555655666666555556655444333333332211110 011233455666666666677778888887543
No 207
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=62.41 E-value=4.1e+02 Score=33.51 Aligned_cols=20 Identities=15% Similarity=0.255 Sum_probs=12.8
Q ss_pred HHHHHHHhhhHHhHHhhHHH
Q 003781 495 DGIAGELDGNSRSTFGDLNS 514 (796)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~ 514 (796)
..+.++++..+...|+.+.+
T Consensus 224 ~~i~~~l~~~~~~~L~~i~~ 243 (806)
T PF05478_consen 224 GDIQDQLGSNVYPALDSILD 243 (806)
T ss_pred HHHHHHHhhhhHHHHHHHHH
Confidence 55556666666666666665
No 208
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=62.15 E-value=1.8e+02 Score=35.30 Aligned_cols=86 Identities=23% Similarity=0.249 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 319 KQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTEL 398 (796)
Q Consensus 319 ~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~L~~le~~l~~~~~~l~e~~~~i~~l~~~e~~l~~~~~~l~~~l 398 (796)
+.+..+....+.+..+...|+..++.++.+++.++..|..+..+.. .+...-..+.. +......|...|
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-------~~~~~~rei~~----~~~~I~~L~~~L 490 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR-------DKVRKDREIRA----RDRRIERLEKEL 490 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhHHHHH----HHHHHHHHHHHH
Confidence 3444444444444444445555555555555544444444433322 11100011111 122334555666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003781 399 ENAASDVSNLFAKIERK 415 (796)
Q Consensus 399 ~~~~~~v~~L~~kl~rk 415 (796)
.+....++.|..++.+.
T Consensus 491 ~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 491 EEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666666543
No 209
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=62.08 E-value=5.1e+02 Score=34.44 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHhHhhhhHhHHHhhhhhhhhhhhHHHhHH-HHHHH----
Q 003781 612 KFEESAANEERQLLE-KVAELLASSNARKKQLVQMAVQDLRESASSRTSQLQKEMSTMQDSTFSVKAEWS-AHMNK---- 685 (796)
Q Consensus 612 ~~~~~~~~~~~~l~~-~i~~l~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---- 685 (796)
+|+....+-|.+++. +.+++.....++=.+-++.++ .+-|...|+.+-.-+..-|. +|-+.
T Consensus 1082 ~~kd~~~nyr~~~ie~~tt~~~~~DL~ky~~aLD~Ai-------------m~fHs~KMeeiN~iI~elW~~tYrG~Did~ 1148 (1294)
T KOG0962|consen 1082 DFKDAEKNYRKALIELKTTELSNKDLDKYYKALDKAI-------------MQFHSMKMEEINRIIRELWRKTYRGTDIDY 1148 (1294)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 344455555555554 455555544444333333322 34456679999999999997 34333
Q ss_pred --hhhhhhh--hhhhHhhhhhcHHHHHHHHHHhhhhhhHhHHHHHH
Q 003781 686 --TESHYLE--DTSAVENGKKDLEVVLQNCLKQAKMGAQQWRTAQE 727 (796)
Q Consensus 686 --~~~~~~e--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (796)
..++... ..+-....+-.|...--..-.|.|.+++|---|-.
T Consensus 1149 IrIrsD~~~s~~~~rsYnyrVv~~kgd~eldMRGRcSAGQKvLAsl 1194 (1294)
T KOG0962|consen 1149 IKIRSDSVSSSDKRRTYNYRVVMVKGDTELDMRGRCSAGQKVLASL 1194 (1294)
T ss_pred EEEeeccccccccccccceeEEEEechHHHHhccCccchHHHHHHH
Confidence 2222222 22222233334444445566777888777655544
No 210
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=61.17 E-value=1e+02 Score=31.04 Aligned_cols=23 Identities=9% Similarity=0.219 Sum_probs=7.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHH
Q 003781 527 FKGIASEADSLLNDLQSSLYKQE 549 (796)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~ 549 (796)
+.++..++.-+-.+|...+.+..
T Consensus 101 vq~l~~E~qk~~k~v~~~~~~~~ 123 (155)
T PF07464_consen 101 VQSLVQESQKLAKEVSENSEGAN 123 (155)
T ss_dssp HHHHHHHHHHHHHHHHS---SS-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 33334444444444444443333
No 211
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=61.13 E-value=3.2e+02 Score=31.88 Aligned_cols=38 Identities=5% Similarity=0.059 Sum_probs=24.4
Q ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 003781 462 MQSFVSTKAEATEELRGRLGKLKAMYGSGIKALDGIAG 499 (796)
Q Consensus 462 ~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~e~i~~~~~ 499 (796)
+..|+..+..++.++--.|-.+|..+...-.+++...+
T Consensus 381 ~gtl~vahgsslDdVD~kIleak~al~evtt~lrErl~ 418 (575)
T KOG4403|consen 381 FGTLHVAHGSSLDDVDHKILEAKSALSEVTTLLRERLH 418 (575)
T ss_pred heeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666777777777777777776665555544443
No 212
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=61.13 E-value=1e+02 Score=32.84 Aligned_cols=51 Identities=25% Similarity=0.293 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003781 319 KQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANAT 369 (796)
Q Consensus 319 ~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~L~~le~~l~~~~~~ 369 (796)
....++++.++..+.++.+|.+++..++.++++.+..|..++.+..++++.
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~ 185 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEM 185 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555565666666666666666666666666666666555554443
No 213
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=61.02 E-value=1.8e+02 Score=28.90 Aligned_cols=71 Identities=25% Similarity=0.283 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 293 YLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKH 363 (796)
Q Consensus 293 ~~~~e~e~k~~~~~ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~L~~le~~l 363 (796)
+...+.+.++.+..-..++..+.+.+..+...+.............+..+..++.++..+...+.+++.++
T Consensus 5 ~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL 75 (140)
T PF10473_consen 5 FLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELEL 75 (140)
T ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555666666666666666666666655555444433333334444444444444444444444333
No 214
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=60.93 E-value=2.8e+02 Score=31.17 Aligned_cols=41 Identities=29% Similarity=0.325 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 378 ANLLKSEKALVERAIELRTELENAASDVSNLFAKIERKDKI 418 (796)
Q Consensus 378 ~~l~~~e~~l~~~~~~l~~~l~~~~~~v~~L~~kl~rk~~~ 418 (796)
....+....|..+...++..+.++..|+.-|..++.+.+-.
T Consensus 75 ~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~ 115 (319)
T PF09789_consen 75 SESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVG 115 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhh
Confidence 34444556677777788888888888888888888765443
No 215
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.25 E-value=3.4e+02 Score=31.89 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH
Q 003781 473 TEELRGRLGKLKAMYGSGIKALDGI 497 (796)
Q Consensus 473 ~~~l~~~~~~~k~~~~~~~e~i~~~ 497 (796)
+.+|.++++.....++-.+..++.+
T Consensus 412 treLqkq~ns~se~L~Rsfavtdel 436 (521)
T KOG1937|consen 412 TRELQKQENSESEALNRSFAVTDEL 436 (521)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3455556655555555555555443
No 216
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=60.00 E-value=1.3e+02 Score=33.58 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 003781 349 LEETEHALSDLEEKHRQANATIKEKDFLIANL 380 (796)
Q Consensus 349 l~~~~~~L~~le~~l~~~~~~l~e~~~~i~~l 380 (796)
++..+.....++.++..++..+.+++.+|..+
T Consensus 142 lEr~K~~~d~L~~e~~~Lre~L~~rdeli~kh 173 (302)
T PF09738_consen 142 LERQKRAHDSLREELDELREQLKQRDELIEKH 173 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 33333444444444444445555555555443
No 217
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=59.92 E-value=2.8e+02 Score=30.85 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 003781 266 LYSEIDRLKQEVYAAREK 283 (796)
Q Consensus 266 l~~EI~~Lk~el~~~r~k 283 (796)
|+.||..||.++...+..
T Consensus 4 Lq~eia~LrlEidtik~q 21 (305)
T PF14915_consen 4 LQDEIAMLRLEIDTIKNQ 21 (305)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567888888888766543
No 218
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=59.09 E-value=1.1e+02 Score=32.49 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=24.9
Q ss_pred CCCCCCccc-cccccccCCCcceeeeeecCCCCCChHhHHHHHHHHHHhccCcccc
Q 003781 197 VPYRDSKLT-RLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNKP 251 (796)
Q Consensus 197 IPYRdSKLT-rLLqDSLGGnskT~mIatVSPs~~~~eETlsTL~fA~RAk~Ikn~p 251 (796)
.|+|-.+++ ..++..+++..++.+.+++. +=-|-|++-+++|.+..
T Consensus 24 p~r~~~~~~~~~~~~~~~~~~~~~i~~~~~---------villlfiDsvr~i~~~~ 70 (216)
T KOG1962|consen 24 PPRRRRKIFKDRLKSGLAPQVLKTIATTMI---------VILLLFIDSVRRIQKYV 70 (216)
T ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHHHHH---------HHHHHHHHHHHHHHHhh
Confidence 344444444 44455566666666666542 22356777777776544
No 219
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=58.52 E-value=1.6e+02 Score=28.83 Aligned_cols=82 Identities=21% Similarity=0.218 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 476 LRGRLGKLKAMYGSGIKALDGIAGELDGNSRSTFGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQSSLYKQEEKLTAY 555 (796)
Q Consensus 476 l~~~~~~~k~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 555 (796)
+..++..+++........++.++.++.......+..+...+.... +...-+..+...|.+-+..+..-
T Consensus 38 ~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~------------~sq~~i~~lK~~L~~ak~~L~~~ 105 (142)
T PF04048_consen 38 RAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSIS------------ESQERIRELKESLQEAKSLLGCR 105 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHhcC
Confidence 444555555555555555565555544444444444443333332 33344566777777777777777
Q ss_pred HHHHHHHHHHHHHH
Q 003781 556 AQQQREAHSRAVEN 569 (796)
Q Consensus 556 ~~~~~~~~~~~~~~ 569 (796)
++++++.|.++.+.
T Consensus 106 ~~eL~~L~~~s~~~ 119 (142)
T PF04048_consen 106 REELKELWQRSQEY 119 (142)
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888887763
No 220
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=58.42 E-value=6e+02 Score=34.14 Aligned_cols=18 Identities=28% Similarity=0.373 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003781 264 KDLYSEIDRLKQEVYAAR 281 (796)
Q Consensus 264 k~l~~EI~~Lk~el~~~r 281 (796)
++++.+++.|+..+.++.
T Consensus 233 ~~~~~~le~l~~~~~~l~ 250 (1353)
T TIGR02680 233 DEYRDELERLEALERALR 250 (1353)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555554444443
No 221
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=57.80 E-value=3.7e+02 Score=31.46 Aligned_cols=20 Identities=40% Similarity=0.350 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 003781 371 KEKDFLIANLLKSEKALVER 390 (796)
Q Consensus 371 ~e~~~~i~~l~~~e~~l~~~ 390 (796)
+|.+.++.++.++|..|...
T Consensus 309 kelE~lR~~L~kAEkele~n 328 (575)
T KOG4403|consen 309 KELEQLRVALEKAEKELEAN 328 (575)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 35566666677777766543
No 222
>PRK11519 tyrosine kinase; Provisional
Probab=57.22 E-value=4.3e+02 Score=32.79 Aligned_cols=74 Identities=15% Similarity=0.172 Sum_probs=39.5
Q ss_pred CcceeeeeecCCCCCChHhHHHHHHHHHHhccCccccccccc--cchHHHHHHHHHHHHHHHHHHHHHHhhCCCcC
Q 003781 215 KTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNKPEINQK--MMKSAMIKDLYSEIDRLKQEVYAAREKNGIYI 288 (796)
Q Consensus 215 nskT~mIatVSPs~~~~eETlsTL~fA~RAk~Ikn~p~vN~~--~~~~~lik~l~~EI~~Lk~el~~~r~k~gv~~ 288 (796)
.+..+-|..-+|++.-....++++-=+..-.++..+-..... .--...+.+++.+++.....+...|.++|+..
T Consensus 226 ~S~ii~Is~~~~dP~~Aa~iaN~l~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd 301 (719)
T PRK11519 226 DTGVLSLTYTGEDREQIRDILNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVD 301 (719)
T ss_pred CceEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 355555666667766666666666433333333322211111 01123345666666666677777888888753
No 223
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.90 E-value=4.2e+02 Score=31.89 Aligned_cols=73 Identities=25% Similarity=0.335 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003781 297 EAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANAT 369 (796)
Q Consensus 297 e~e~k~~~~~ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~L~~le~~l~~~~~~ 369 (796)
+.+.+.+++++..+...+..+...+..+++...+...-...+..+|..++-.++..+.+..+++.++.++...
T Consensus 337 ~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~ 409 (654)
T KOG4809|consen 337 RKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNI 409 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666777777776666666666666665555554445556666666666666666666666666655543
No 224
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.48 E-value=4.2e+02 Score=31.47 Aligned_cols=14 Identities=29% Similarity=0.245 Sum_probs=7.5
Q ss_pred CCCCCCCCcccccc
Q 003781 195 GHVPYRDSKLTRLL 208 (796)
Q Consensus 195 ~hIPYRdSKLTrLL 208 (796)
.-+||=++.-|.=+
T Consensus 228 ~tv~~~e~~~~l~~ 241 (508)
T KOG3091|consen 228 VTVRYAEGTSTLTL 241 (508)
T ss_pred cccccCCCcccccc
Confidence 35666666554433
No 225
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=55.27 E-value=3.9 Score=50.21 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=14.0
Q ss_pred CCeEecccEEEEecCHHHHHHHHHhchh
Q 003781 80 GGVFVRGLEEEIVTTADEIYKILEKGSA 107 (796)
Q Consensus 80 ~gv~V~gL~ev~V~s~~e~~~lL~~G~~ 107 (796)
...||..+.......-..++..|+....
T Consensus 128 ke~yI~~I~~Ld~~~Q~~im~~Iqev~~ 155 (713)
T PF05622_consen 128 KEEYIQRIMELDESTQHAIMEAIQEVTS 155 (713)
T ss_dssp HHHHHHHHHHS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 3445555555555555555555554433
No 226
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=54.82 E-value=4.1e+02 Score=31.08 Aligned_cols=13 Identities=38% Similarity=0.335 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHH
Q 003781 178 KSLLTLGRVINAL 190 (796)
Q Consensus 178 kSLlaLg~VI~aL 190 (796)
+|-..+..||..+
T Consensus 78 ~Sr~v~~~vi~~l 90 (498)
T TIGR03007 78 LSRPNLEKVIRML 90 (498)
T ss_pred hChHHHHHHHHHc
Confidence 4555566666665
No 227
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=53.84 E-value=3.6e+02 Score=30.23 Aligned_cols=95 Identities=20% Similarity=0.290 Sum_probs=58.9
Q ss_pred hhHHHHHHhhhhHHHHHH-HHHHHhhCCCCCCCCCCccccccccccCCCcceeeeeecCCCCCChHhHHHHHHHHHHhcc
Q 003781 168 GRAREAGEINKSLLTLGR-VINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKN 246 (796)
Q Consensus 168 ~r~kEa~~INkSLlaLg~-VI~aL~~~~~hIPYRdSKLTrLLqDSLGGnskT~mIatVSPs~~~~eETlsTL~fA~RAk~ 246 (796)
-..+||..||+-|+-=|. .|+.|..+.. -.|++||.-
T Consensus 149 F~p~eaq~Iaqailkqse~lIN~Ls~rAr---------------------------------------~dt~r~Ae~--- 186 (372)
T COG3524 149 FDPKEAQKIAQAILKQSEKLINQLSERAR---------------------------------------RDTVRFAEE--- 186 (372)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------HHHHHHHHH---
Confidence 346899999999998776 6788866432 246777764
Q ss_pred CccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 247 IKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQE 326 (796)
Q Consensus 247 Ikn~p~vN~~~~~~~lik~l~~EI~~Lk~el~~~r~k~gv~~~~~~~~~~e~e~k~~~~~ie~le~~l~~~~~~l~~l~~ 326 (796)
.+....+.+.+-...|...|-+||+..|.....- ....+..++.+|-..+.++..++.
T Consensus 187 ---------------eV~~~eerv~kAs~~L~~yr~kngvfdp~~qaev-------q~~Lvs~Le~eL~~iqaqL~tvks 244 (372)
T COG3524 187 ---------------EVQKAEERVKKASNDLTDYRIKNGVFDPKAQAEV-------QMSLVSKLEDELIVIQAQLDTVKS 244 (372)
T ss_pred ---------------HHHHHHHHHHHHHhHHHHHHhhcCccChhhhhHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233445566667788889999999877654311 112344455555444445544443
No 228
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=53.80 E-value=68 Score=27.73 Aligned_cols=48 Identities=23% Similarity=0.376 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 304 AEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEE 351 (796)
Q Consensus 304 ~~~ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~ 351 (796)
.++|..++..+...+..+++|....-.++.+.+.|...+..+...+..
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666676666666666666666666665555555555555444443
No 229
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=53.79 E-value=2.4e+02 Score=34.32 Aligned_cols=74 Identities=15% Similarity=0.261 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 003781 307 IERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEET---EHALSDLEEKHRQANATIKEKDFLIANL 380 (796)
Q Consensus 307 ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~---~~~L~~le~~l~~~~~~l~e~~~~i~~l 380 (796)
+..++..++.++.++..|+..++.++.....|+.+|.....+.... ..++..++..+..++..|.++...+..|
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L 500 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEEL 500 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444445555555554443311 1222233334444444454444444433
No 230
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=53.50 E-value=2.5e+02 Score=28.29 Aligned_cols=21 Identities=10% Similarity=0.289 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003781 393 ELRTELENAASDVSNLFAKIE 413 (796)
Q Consensus 393 ~l~~~l~~~~~~v~~L~~kl~ 413 (796)
..+..+.....+...+...+.
T Consensus 81 h~keKl~~~~~~~~~l~~~l~ 101 (177)
T PF13870_consen 81 HVKEKLHFLSEELERLKQELK 101 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444
No 231
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=53.07 E-value=2.7e+02 Score=28.42 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhhHHHHH
Q 003781 475 ELRGRLGKLKAMYGSGIKAL 494 (796)
Q Consensus 475 ~l~~~~~~~k~~~~~~~e~i 494 (796)
+++..+..+++.+......+
T Consensus 103 el~~~l~~~~~~~~~~~~~~ 122 (204)
T PF04740_consen 103 ELKKKLNQLKEQIEDLQDEI 122 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455544444444333333
No 232
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=52.95 E-value=3.8e+02 Score=30.23 Aligned_cols=70 Identities=13% Similarity=0.172 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003781 476 LRGRLGKLKAMYGSGIKALDGIAGELDGNSRSTFGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQSSL 545 (796)
Q Consensus 476 l~~~~~~~k~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (796)
..+++..+++.+...++.++.-|..++..-......+.+....+..+..+.+..+..-+...|+.+.+.+
T Consensus 117 y~~~~~~l~~~l~~~l~~~~~~y~~~d~~q~dw~~G~~~a~~~y~d~a~n~a~~~~~~~~~af~gm~dal 186 (332)
T TIGR01541 117 YKEQLAAIKAALNEALAELHAYYAAEDALQGDWLAGARSGLADYGETATNVASAAAQLATNAFGGMASNI 186 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555566666666666666677777777777777777766666666666666666555
No 233
>PRK02119 hypothetical protein; Provisional
Probab=52.48 E-value=91 Score=27.41 Aligned_cols=48 Identities=19% Similarity=0.317 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 302 AMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKL 349 (796)
Q Consensus 302 ~~~~~ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l 349 (796)
.+.++|..+|..+.-.+..+.+|....-.+++..+.|...+..+...+
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777766666777776666666655555555554444433
No 234
>PRK10869 recombination and repair protein; Provisional
Probab=51.52 E-value=5.1e+02 Score=31.22 Aligned_cols=6 Identities=0% Similarity=0.119 Sum_probs=2.2
Q ss_pred HHHHHH
Q 003781 97 EIYKIL 102 (796)
Q Consensus 97 e~~~lL 102 (796)
+++.++
T Consensus 40 dAi~~l 45 (553)
T PRK10869 40 DALGLC 45 (553)
T ss_pred HHHHHH
Confidence 333333
No 235
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=51.41 E-value=4.8e+02 Score=30.87 Aligned_cols=12 Identities=33% Similarity=0.611 Sum_probs=6.1
Q ss_pred EEEEEEEEEcCc
Q 003781 39 MKVTFLELYNEE 50 (796)
Q Consensus 39 V~vS~lEIYNE~ 50 (796)
+++=..|-+|++
T Consensus 95 CKFH~~Eafnde 106 (527)
T PF15066_consen 95 CKFHWTEAFNDE 106 (527)
T ss_pred hhhhhhhhcccc
Confidence 333345556665
No 236
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=51.38 E-value=5e+02 Score=31.12 Aligned_cols=16 Identities=13% Similarity=0.410 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 003781 393 ELRTELENAASDVSNL 408 (796)
Q Consensus 393 ~l~~~l~~~~~~v~~L 408 (796)
.+...|....+.|+.|
T Consensus 498 smNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 498 SMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333334433
No 237
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=51.31 E-value=4e+02 Score=30.00 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHHHH
Q 003781 371 KEKDFLIANLLKSE 384 (796)
Q Consensus 371 ~e~~~~i~~l~~~e 384 (796)
.+++..+..+++..
T Consensus 126 ~ere~lV~qLEk~~ 139 (319)
T PF09789_consen 126 HEREDLVEQLEKLR 139 (319)
T ss_pred hHHHHHHHHHHHHH
Confidence 34555555554433
No 238
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=51.29 E-value=4.2e+02 Score=30.24 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 003781 260 SAMIKDLYSEIDRLKQEVYAAREK 283 (796)
Q Consensus 260 ~~lik~l~~EI~~Lk~el~~~r~k 283 (796)
...+.+|+.|++.|+.|+......
T Consensus 93 ~~kl~RL~~Ev~EL~eEl~~~~~~ 116 (388)
T PF04912_consen 93 EQKLQRLRREVEELKEELEKRKAD 116 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345678899999999999876543
No 239
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=51.14 E-value=4.3e+02 Score=30.23 Aligned_cols=33 Identities=12% Similarity=0.167 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 003781 392 IELRTELENAASDVSNLFAKIERKDKIEEGNRI 424 (796)
Q Consensus 392 ~~l~~~l~~~~~~v~~L~~kl~rk~~~~~~n~~ 424 (796)
..+...|..+.+++...+.+++++..--+.+.-
T Consensus 297 ~~~t~~L~~IseeLe~vK~emeerg~~mtD~sP 329 (359)
T PF10498_consen 297 SERTRELAEISEELEQVKQEMEERGSSMTDGSP 329 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCH
Confidence 344455566666666666666666554343333
No 240
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=50.86 E-value=4.8e+02 Score=30.74 Aligned_cols=191 Identities=17% Similarity=0.203 Sum_probs=97.8
Q ss_pred HhhHHHHHHHHHHHHhhhHHhHHhhHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 487 YGSGIKALDGIAGELDGNSRSTFGDLNSEVSKHS-HALEDLFKGIASEADSLLNDLQSSLYKQEEKLTAYAQQQREAHSR 565 (796)
Q Consensus 487 ~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 565 (796)
+...+..|+.+++.+...+...++.+...+...- ..-+..-.-+...+..++..++......=+.|..+-.++...+.
T Consensus 262 ~~~~~~~lr~~~E~~~~ec~~~ve~~k~~L~~~~~~~~eea~~lv~~~~~plv~~~q~~~e~~le~l~~~~E~~a~~~~- 340 (473)
T PF14643_consen 262 HQQCMEKLRALYEKICQECLALVEKLKQELLDWKACTEEEAEELVNPEFLPLVGELQSEFEEELEKLDKSFEELAKQTE- 340 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3355556677777777777666666665544422 11222222233344444444444444433333333332333332
Q ss_pred HHHHHHHHhHHHHHhHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 003781 566 AVENARSVSKVTVNFFKTLDMHASNLTKIVEEAQTVNDQKLFEFEKKFEESAANEERQLLEKVAELLASSNARKKQLVQM 645 (796)
Q Consensus 566 ~~~~~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~q~~~~~~ 645 (796)
........||..+..--. . +...+..+...+ ..-|.+...-...-.+.++.-|..
T Consensus 341 ------~~~~~L~~f~~~~~~lwd-------~----h~~~l~~~e~~l--------~~~l~~~r~~~~~~~q~~E~~Ld~ 395 (473)
T PF14643_consen 341 ------AQSEDLFKFFQEAAQLWD-------E----HRKKLSKQEEEL--------EKRLEQCREKHDQENQEKEAKLDI 395 (473)
T ss_pred ------HHHHHHHHHHHHHHHHHH-------H----HHHHHHHHHHHH--------HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 233333344443322111 1 112222222222 444555566666677778888888
Q ss_pred HHHHHHHhHhhhhHhHHHhhhhhhhhhhhHHHhHHHHHHHhhhhhhhhhhhHhhhhhcHH
Q 003781 646 AVQDLRESASSRTSQLQKEMSTMQDSTFSVKAEWSAHMNKTESHYLEDTSAVENGKKDLE 705 (796)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 705 (796)
.++.||.... ...|+..+...-++=..++.....|-...-....+-...|.......+
T Consensus 396 ~~d~lRq~s~--ee~L~~~l~~~~~~Ld~Ie~~Y~~fh~~~~~~~~~yP~~i~~e~~~Y~ 453 (473)
T PF14643_consen 396 ALDRLRQASS--EEKLKEHLEKALDLLDQIEEEYEDFHKKQTAIVMEYPEMILKELESYS 453 (473)
T ss_pred HHHHHHhCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888886544 566788877777777777777777766544444444444443333333
No 241
>PRK04406 hypothetical protein; Provisional
Probab=50.02 E-value=1.3e+02 Score=26.68 Aligned_cols=46 Identities=20% Similarity=0.381 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 303 MAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKK 348 (796)
Q Consensus 303 ~~~~ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~ 348 (796)
+.++|..||..+.-.+..+++|....-.++++.+.|...+..+...
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~r 54 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGK 54 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777666666666666666666665555555554444433
No 242
>PRK01156 chromosome segregation protein; Provisional
Probab=49.67 E-value=6.5e+02 Score=31.90 Aligned_cols=9 Identities=0% Similarity=0.157 Sum_probs=4.2
Q ss_pred cCHHHHHHH
Q 003781 93 TTADEIYKI 101 (796)
Q Consensus 93 ~s~~e~~~l 101 (796)
+|.=+++.+
T Consensus 37 SsileAI~~ 45 (895)
T PRK01156 37 SSIVDAIRF 45 (895)
T ss_pred HHHHHHHHH
Confidence 344455554
No 243
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=49.19 E-value=5.4e+02 Score=30.80 Aligned_cols=22 Identities=32% Similarity=0.294 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 003781 468 TKAEATEELRGRLGKLKAMYGS 489 (796)
Q Consensus 468 ~~~~~~~~l~~~~~~~k~~~~~ 489 (796)
.....+++|..+|..++..+.+
T Consensus 169 ~~~~kve~L~~Ei~~lke~l~~ 190 (522)
T PF05701_consen 169 ENEEKVEELSKEIIALKESLES 190 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566777777777777664
No 244
>PRK12704 phosphodiesterase; Provisional
Probab=48.82 E-value=5.5e+02 Score=30.81 Aligned_cols=9 Identities=22% Similarity=0.449 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 003781 622 RQLLEKVAE 630 (796)
Q Consensus 622 ~~l~~~i~~ 630 (796)
.-||-+|..
T Consensus 364 AgLLHDIGK 372 (520)
T PRK12704 364 AGLLHDIGK 372 (520)
T ss_pred HHHHHccCc
Confidence 334444443
No 245
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=48.81 E-value=7.7e+02 Score=32.51 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003781 263 IKDLYSEIDRLKQEVYA 279 (796)
Q Consensus 263 ik~l~~EI~~Lk~el~~ 279 (796)
+.++-+++.++++++..
T Consensus 74 i~~ap~~~~~~~~~l~~ 90 (1109)
T PRK10929 74 IDNFPKLSAELRQQLNN 90 (1109)
T ss_pred HHHhHHHHHHHHHHHHh
Confidence 33444445555555543
No 246
>PRK00295 hypothetical protein; Provisional
Probab=48.67 E-value=1.3e+02 Score=26.03 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 305 EKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKL 349 (796)
Q Consensus 305 ~~ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l 349 (796)
++|..+|..+.-.+..+++|....-.++++.+.|...+..+...+
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl 49 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQ 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666555555555444444333
No 247
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=47.74 E-value=5.2e+02 Score=30.23 Aligned_cols=32 Identities=13% Similarity=0.172 Sum_probs=22.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 528 KGIASEADSLLNDLQSSLYKQEEKLTAYAQQQ 559 (796)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 559 (796)
..++..+.-+++++++.+..++.+.-..++..
T Consensus 325 ~~~e~~~lk~~e~~~kqL~~~~kek~~~~Qd~ 356 (446)
T KOG4438|consen 325 NQLELEKLKMFENLTKQLNELKKEKESRRQDL 356 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677788999999999887765555533
No 248
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=47.73 E-value=1.6e+02 Score=31.35 Aligned_cols=15 Identities=27% Similarity=0.149 Sum_probs=7.3
Q ss_pred HhhhhHHHHHHHHHH
Q 003781 175 EINKSLLTLGRVINA 189 (796)
Q Consensus 175 ~INkSLlaLg~VI~a 189 (796)
.++.-+.+++-||--
T Consensus 43 ~~~~~i~~~~~vill 57 (216)
T KOG1962|consen 43 QVLKTIATTMIVILL 57 (216)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555554433
No 249
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=47.59 E-value=4e+02 Score=28.90 Aligned_cols=79 Identities=25% Similarity=0.315 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 003781 303 MAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLL 381 (796)
Q Consensus 303 ~~~~ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~L~~le~~l~~~~~~l~e~~~~i~~l~ 381 (796)
+.-++-.+..++...----.+|+...++-.....+|+.++++++++-.+..-.+.=++.++.-+-.+..+++.+|..+.
T Consensus 21 LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eRn~Li~~ll 99 (277)
T PF15030_consen 21 LHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRERNRLITHLL 99 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555554455566677766666677788888888888777777777778777777777777777776653
No 250
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=47.58 E-value=3.2e+02 Score=27.73 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 003781 332 LLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKE 372 (796)
Q Consensus 332 ~~~~~~l~~~l~~~~~~l~~~~~~L~~le~~l~~~~~~l~e 372 (796)
..+...+..+|..++.++.++-.....++...+.+..+|.+
T Consensus 26 R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~e 66 (159)
T PF05384_consen 26 RQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAE 66 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666677777777777777777777777766666655
No 251
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=46.62 E-value=2.2e+02 Score=25.64 Aligned_cols=7 Identities=14% Similarity=0.520 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 003781 405 VSNLFAK 411 (796)
Q Consensus 405 v~~L~~k 411 (796)
+++|-.|
T Consensus 69 Lr~LLGk 75 (79)
T PRK15422 69 LQALLGR 75 (79)
T ss_pred HHHHHHh
Confidence 3333333
No 252
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=46.60 E-value=4.2e+02 Score=28.89 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=9.3
Q ss_pred hHhhHHHHHHHHHHHHHHHHHH
Q 003781 465 FVSTKAEATEELRGRLGKLKAM 486 (796)
Q Consensus 465 ~~~~~~~~~~~l~~~~~~~k~~ 486 (796)
|+.++...-+-+-+.+..+|++
T Consensus 151 fLESELdEke~llesvqRLkdE 172 (333)
T KOG1853|consen 151 FLESELDEKEVLLESVQRLKDE 172 (333)
T ss_pred HHHHHhhHHHHHHHHHHHHHHH
Confidence 4444433333444444444443
No 253
>PRK04325 hypothetical protein; Provisional
Probab=46.36 E-value=1.3e+02 Score=26.43 Aligned_cols=47 Identities=15% Similarity=0.197 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 303 MAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKL 349 (796)
Q Consensus 303 ~~~~ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l 349 (796)
+.++|..||..+.-.+..+++|....-.++++...|...+..+...+
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666555555554444444333
No 254
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=46.21 E-value=4.6e+02 Score=29.22 Aligned_cols=16 Identities=13% Similarity=0.075 Sum_probs=8.2
Q ss_pred HHHhHHHHHHHHHHHH
Q 003781 419 EEGNRILIQMFQSQLT 434 (796)
Q Consensus 419 ~~~n~~~~~~~~~~~~ 434 (796)
...-+..|-+++.++.
T Consensus 132 Rl~aK~~WYeWR~~ll 147 (325)
T PF08317_consen 132 RLEAKKMWYEWRMQLL 147 (325)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555666655443
No 255
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=46.19 E-value=4.7e+02 Score=29.33 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003781 539 NDLQSSLYKQEEKLTAYAQQQRE 561 (796)
Q Consensus 539 ~~~~~~~~~~~~e~~~~~~~~~~ 561 (796)
+.+..++...++|+.++++|+..
T Consensus 225 e~~~shI~~Lr~EV~RLR~qL~~ 247 (310)
T PF09755_consen 225 ERLSSHIRSLRQEVSRLRQQLAA 247 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777788777775554
No 256
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=45.72 E-value=7.8e+02 Score=31.71 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHH
Q 003781 591 LTKIVEEAQTVNDQKLFEFEKKFEE 615 (796)
Q Consensus 591 l~~~~~~~~~~~~~~l~~~~~~~~~ 615 (796)
+.-+++..+.+...++..++.-.++
T Consensus 991 ~~p~~~q~~~s~itkl~~~eg~~ke 1015 (1283)
T KOG1916|consen 991 VEPVIEQTVSSAITKLFQREGIGKE 1015 (1283)
T ss_pred hHHHHHHHHHHHHHHHHHhhchHHH
Confidence 4555666666666666666444433
No 257
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=45.24 E-value=4.2e+02 Score=28.45 Aligned_cols=84 Identities=11% Similarity=0.177 Sum_probs=60.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhhhHhHHHhhhhhhhhhhhHHHhHHHH
Q 003781 603 DQKLFEFEKKFEESAANEERQLLEKVAELLASSNARKKQLVQMAVQDLRESASSRTSQLQKEMSTMQDSTFSVKAEWSAH 682 (796)
Q Consensus 603 ~~~l~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (796)
...+..-++.|+......+.. ....+...+..+.++-.-+..++...+..+......++..+.....+...-.++|..+
T Consensus 119 ~k~l~ksKk~Ye~~Cke~~~a-~q~~~k~~~~~t~keleK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~w~~~~~~~ 197 (242)
T cd07671 119 YKKTMESKKTYEQRCREADEA-EQTFERSSSTGNPKQSEKSQNKAKQCRDAATEAERVYKQNIEQLDKARTEWETEHILT 197 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677887665554443 2233334444556667778888999999998899999999999999999999999888
Q ss_pred HHHhh
Q 003781 683 MNKTE 687 (796)
Q Consensus 683 ~~~~~ 687 (796)
...-.
T Consensus 198 ~~~~Q 202 (242)
T cd07671 198 CEVFQ 202 (242)
T ss_pred HHHHH
Confidence 76643
No 258
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=45.20 E-value=1.1e+02 Score=34.51 Aligned_cols=12 Identities=25% Similarity=0.160 Sum_probs=5.0
Q ss_pred hHHHHHHHHHHH
Q 003781 179 SLLTLGRVINAL 190 (796)
Q Consensus 179 SLlaLg~VI~aL 190 (796)
..-+|..-..+|
T Consensus 87 a~P~L~~A~~al 98 (344)
T PF12777_consen 87 AEPALEEAQEAL 98 (344)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 259
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=44.83 E-value=2.2e+02 Score=25.07 Aligned_cols=6 Identities=33% Similarity=0.650 Sum_probs=2.2
Q ss_pred HHHHHH
Q 003781 319 KQLMEL 324 (796)
Q Consensus 319 ~~l~~l 324 (796)
.+|..|
T Consensus 12 e~Ia~L 17 (74)
T PF12329_consen 12 EQIAQL 17 (74)
T ss_pred HHHHHH
Confidence 333333
No 260
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=44.66 E-value=7.1e+02 Score=30.96 Aligned_cols=39 Identities=13% Similarity=-0.058 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHhhH
Q 003781 474 EELRGRLGKLKAMYGSGIKALDGIAGELDGNSRSTFGDL 512 (796)
Q Consensus 474 ~~l~~~~~~~k~~~~~~~e~i~~~~~~~~~~~~~~~~~~ 512 (796)
.+|..++..++++=+.....++--+.-++..++..=++.
T Consensus 474 ~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqg 512 (739)
T PF07111_consen 474 TDLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQG 512 (739)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 477777777777766666666655555655555444433
No 261
>PRK02793 phi X174 lysis protein; Provisional
Probab=44.27 E-value=1.5e+02 Score=26.06 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 303 MAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKL 349 (796)
Q Consensus 303 ~~~~ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l 349 (796)
+.++|..+|..+.-.+..+.+|.+..-.++++.+.|...+..+...+
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667766666666666666666666555555555544444333
No 262
>PRK00736 hypothetical protein; Provisional
Probab=44.25 E-value=1.5e+02 Score=25.64 Aligned_cols=45 Identities=18% Similarity=0.396 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 305 EKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKL 349 (796)
Q Consensus 305 ~~ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l 349 (796)
++|..+|..+.-.+..+++|....-.+++..+.|...+..+...+
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666655555555554444444333
No 263
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=44.22 E-value=2.9e+02 Score=26.30 Aligned_cols=51 Identities=12% Similarity=0.145 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 314 SESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHR 364 (796)
Q Consensus 314 l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~L~~le~~l~ 364 (796)
+..++..++......+....+.++|+..+..++.........+.+++.++.
T Consensus 18 La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ 68 (107)
T PF09304_consen 18 LASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKID 68 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344333344444444445555555555444444444444444433
No 264
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=43.74 E-value=7.3e+02 Score=30.78 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCC
Q 003781 263 IKDLYSEIDRLKQEVYAAREKNG 285 (796)
Q Consensus 263 ik~l~~EI~~Lk~el~~~r~k~g 285 (796)
..+|..+|...++++..+...-|
T Consensus 63 ~~~L~~~ia~~eael~~l~s~l~ 85 (660)
T KOG4302|consen 63 KARLLQEIAVIEAELNDLCSALG 85 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 35666777777777776655443
No 265
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=43.47 E-value=4.2e+02 Score=27.96 Aligned_cols=91 Identities=21% Similarity=0.304 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHhhCCCcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 268 SEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEK 347 (796)
Q Consensus 268 ~EI~~Lk~el~~~r~k~gv~~~~~~~~~~e~e~k~~~~~ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~ 347 (796)
.||.-||.+|...... ...-..+...++..+......+...+.++..++..+.....+......+|.....
T Consensus 10 GEIsLLKqQLke~q~E---------~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~ 80 (202)
T PF06818_consen 10 GEISLLKQQLKESQAE---------VNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKN 80 (202)
T ss_pred hhHHHHHHHHHHHHHH---------HHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhC
Confidence 4677777777544321 0011122333444445555555555566666665555444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003781 348 KLEETEHALSDLEEKHRQAN 367 (796)
Q Consensus 348 ~l~~~~~~L~~le~~l~~~~ 367 (796)
+..-+...+..++.++..++
T Consensus 81 Ea~lLrekl~~le~El~~Lr 100 (202)
T PF06818_consen 81 EAELLREKLGQLEAELAELR 100 (202)
T ss_pred HHHHhhhhhhhhHHHHHHHH
Confidence 44444444444444443333
No 266
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=43.23 E-value=2.5e+02 Score=25.30 Aligned_cols=10 Identities=20% Similarity=0.488 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 003781 304 AEKIERMELE 313 (796)
Q Consensus 304 ~~~ie~le~~ 313 (796)
-+.|.-+..+
T Consensus 17 vdtI~LLqmE 26 (79)
T PRK15422 17 IDTITLLQME 26 (79)
T ss_pred HHHHHHHHHH
Confidence 3334333333
No 267
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=43.22 E-value=6.7e+02 Score=31.63 Aligned_cols=8 Identities=13% Similarity=0.264 Sum_probs=4.2
Q ss_pred CCCCCCCC
Q 003781 194 SGHVPYRD 201 (796)
Q Consensus 194 ~~hIPYRd 201 (796)
..+||...
T Consensus 352 G~~Vpa~~ 359 (771)
T TIGR01069 352 GIPIPANE 359 (771)
T ss_pred CCCccCCc
Confidence 33666654
No 268
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=43.19 E-value=3.3e+02 Score=26.66 Aligned_cols=11 Identities=45% Similarity=0.603 Sum_probs=5.9
Q ss_pred HHhhhhHHHHH
Q 003781 174 GEINKSLLTLG 184 (796)
Q Consensus 174 ~~INkSLlaLg 184 (796)
..||..|.++|
T Consensus 5 ~yiN~~L~s~G 15 (151)
T PF11559_consen 5 EYINQQLLSRG 15 (151)
T ss_pred HHHHHHHHHCC
Confidence 34555555554
No 269
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=42.95 E-value=2.2e+02 Score=24.44 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003781 337 ELSEKLEKTEKKLEETEHALSD 358 (796)
Q Consensus 337 ~l~~~l~~~~~~l~~~~~~L~~ 358 (796)
.+..+|.+++.....++..|.+
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqe 36 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQE 36 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444333333333333
No 270
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=42.83 E-value=5.7e+02 Score=29.29 Aligned_cols=16 Identities=25% Similarity=0.189 Sum_probs=10.5
Q ss_pred hhhhHHHHHHHHHHHh
Q 003781 176 INKSLLTLGRVINALV 191 (796)
Q Consensus 176 INkSLlaLg~VI~aL~ 191 (796)
|=+|-..+.+|+..|.
T Consensus 75 il~S~~v~~~Vi~~l~ 90 (444)
T TIGR03017 75 IINSDRVAKKVVDKLK 90 (444)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 3346667777877764
No 271
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=42.72 E-value=5.3e+02 Score=28.90 Aligned_cols=60 Identities=22% Similarity=0.265 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 262 MIKDLYSEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQELY 328 (796)
Q Consensus 262 lik~l~~EI~~Lk~el~~~r~k~gv~~~~~~~~~~e~e~k~~~~~ie~le~~l~~~~~~l~~l~~~~ 328 (796)
.+.++..++...+..|...|.++|++.|.... ......+..++.++...+.++.+++..+
T Consensus 178 ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~-------~~~~~~i~~L~~~l~~~~~~l~~l~~~~ 237 (362)
T TIGR01010 178 EVKEAEQRLNATKAELLKYQIKNKVFDPKAQS-------SAQLSLISTLEGELIRVQAQLAQLRSIT 237 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcChHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34455556666666666777888887654321 1223344455555555555555554433
No 272
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=42.49 E-value=6.3e+02 Score=29.74 Aligned_cols=187 Identities=11% Similarity=0.126 Sum_probs=84.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHhHHHHHhHhhHHHHHHhHHHHHHHHHH
Q 003781 523 LEDLFKGIASEADSLLNDLQSSLYKQEEKL-TAYAQQQREAHSRAVE-NARSVSKVTVNFFKTLDMHASNLTKIVEEAQT 600 (796)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~~ 600 (796)
....|..+..+-..+......+|.....-+ ..+....=..|..++. ..+..+..+..|+.++...-.....
T Consensus 206 ~~~~~e~~~~~Q~~l~~~r~~~L~~l~~l~Pp~~t~~~v~eW~~~l~~l~~~~d~~~~~~~~~lr~~~E~~~~------- 278 (473)
T PF14643_consen 206 RKQLLEQMRKEQVDLHEKRLELLQSLCDLLPPNLTKEKVEEWYASLNALNEQIDEYHQQCMEKLRALYEKICQ------- 278 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 334444444444444444444443332211 1111222344554433 3445555666666665554444433
Q ss_pred hhhhhHHHHHHHHHH---HHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHhHhhhhHhHHHhhhhhhhhhhhHH
Q 003781 601 VNDQKLFEFEKKFEE---SAANEERQLLE-KVAELLASSNARKKQLVQMAVQDLRESASSRTSQLQKEMSTMQDSTFSVK 676 (796)
Q Consensus 601 ~~~~~l~~~~~~~~~---~~~~~~~~l~~-~i~~l~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (796)
.....+..++.+... ++..+...+++ .+..++........ .-+..+...+-............+=.+-..+-
T Consensus 279 ec~~~ve~~k~~L~~~~~~~~eea~~lv~~~~~plv~~~q~~~e----~~le~l~~~~E~~a~~~~~~~~~L~~f~~~~~ 354 (473)
T PF14643_consen 279 ECLALVEKLKQELLDWKACTEEEAEELVNPEFLPLVGELQSEFE----EELEKLDKSFEELAKQTEAQSEDLFKFFQEAA 354 (473)
T ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444333 33333334333 33333333333333 22333333333334444555555666666677
Q ss_pred HhHHHHHHHhhhhhhhh-------hhhHhhhhhcHHHHHHHHHHhhhhhhH
Q 003781 677 AEWSAHMNKTESHYLED-------TSAVENGKKDLEVVLQNCLKQAKMGAQ 720 (796)
Q Consensus 677 ~~~~~~~~~~~~~~~e~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (796)
.-|+.|-........+- ..-.+..-..+|..|+.++.+.|.++.
T Consensus 355 ~lwd~h~~~l~~~e~~l~~~l~~~r~~~~~~~q~~E~~Ld~~~d~lRq~s~ 405 (473)
T PF14643_consen 355 QLWDEHRKKLSKQEEELEKRLEQCREKHDQENQEKEAKLDIALDRLRQASS 405 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCC
Confidence 77777766532222211 122233345667777777777776654
No 273
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=41.76 E-value=4e+02 Score=27.15 Aligned_cols=19 Identities=21% Similarity=0.597 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHhHhh
Q 003781 450 QQEQQLKDMEEDMQSFVST 468 (796)
Q Consensus 450 ~q~~~~~~~~~~~~~~~~~ 468 (796)
++..++..+...+..|...
T Consensus 21 ~~~~~l~~l~~ai~~~~~~ 39 (204)
T PF04740_consen 21 ELKEQLESLQKAINQFISS 39 (204)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 3344445555555555543
No 274
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=41.29 E-value=7.3e+02 Score=30.14 Aligned_cols=35 Identities=20% Similarity=0.118 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHhhH
Q 003781 478 GRLGKLKAMYGSGIKALDGIAGELDGNSRSTFGDL 512 (796)
Q Consensus 478 ~~~~~~k~~~~~~~e~i~~~~~~~~~~~~~~~~~~ 512 (796)
+.+...++...+...++..++..-+..+.+.-..+
T Consensus 477 ~~~e~~~~e~~e~~~al~el~~~~~~~~~~~~~~~ 511 (607)
T KOG0240|consen 477 EENEAAKDEVKEVLTALEELAVNYDQKSEEKESKL 511 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhh
Confidence 33444444444455555555554444444433333
No 275
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=41.15 E-value=4.1e+02 Score=27.17 Aligned_cols=95 Identities=20% Similarity=0.227 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhHHH-HHHHHHHHHHHHHHhHhhhhHhHHHhhhhhhhhhhhHHHhHHHHHHHhhhhhhhhhhh-Hhhhh
Q 003781 624 LLEKVAELLASSNAR-KKQLVQMAVQDLRESASSRTSQLQKEMSTMQDSTFSVKAEWSAHMNKTESHYLEDTSA-VENGK 701 (796)
Q Consensus 624 l~~~i~~l~~~~~~~-q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~~~ 701 (796)
.+.+++...++.... .+.+=....+.+.+.+..-++.+.+--..|+.+.-+--+-.-.+..++...+.|++-. ++.+.
T Consensus 56 ~~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~inE~t~k~~El~~~i~el~~~~~Ks~~~~l~q~~~~~eEtv~~~ieqqk 135 (165)
T PF09602_consen 56 ELKQFKREFSDLYEEYVKQLRKATGNSLNDSINEWTDKLNELSAKIQELLLSPSKSSFSLLSQISKQYEETVKQLIEQQK 135 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 334444444444333 2222123334444444444444444444455555444444445555666666665533 22222
Q ss_pred h---cHHHHHHHHHHhhhhh
Q 003781 702 K---DLEVVLQNCLKQAKMG 718 (796)
Q Consensus 702 ~---~~~~~~~~~~~~~~~~ 718 (796)
. ....+++.+|..+++.
T Consensus 136 ~~r~e~qk~~~~yv~~~k~~ 155 (165)
T PF09602_consen 136 LTREEWQKVLDAYVEQAKSS 155 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 1 2233445566555543
No 276
>PF15294 Leu_zip: Leucine zipper
Probab=40.98 E-value=5.4e+02 Score=28.49 Aligned_cols=45 Identities=22% Similarity=0.359 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 303 MAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEK 347 (796)
Q Consensus 303 ~~~~ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~ 347 (796)
+...|.++..+.+.+...+..++........+...+...|..++.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666665555555555555555555554
No 277
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=40.76 E-value=5.2e+02 Score=28.28 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 320 QLMELQELYNSQLLLTAELSEKLEKTE 346 (796)
Q Consensus 320 ~l~~l~~~~~~~~~~~~~l~~~l~~~~ 346 (796)
.+.++......+...+.+|...+..++
T Consensus 7 sl~el~~h~~~L~~~N~~L~~~IqdtE 33 (258)
T PF15397_consen 7 SLQELKKHEDFLTKLNKELIKEIQDTE 33 (258)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhHH
Confidence 344444444444444444444444444
No 278
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=40.45 E-value=3.1e+02 Score=32.41 Aligned_cols=19 Identities=16% Similarity=0.406 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003781 262 MIKDLYSEIDRLKQEVYAA 280 (796)
Q Consensus 262 lik~l~~EI~~Lk~el~~~ 280 (796)
-++.|-.++..++.++..+
T Consensus 60 TlrTlva~~k~~r~~~~~l 78 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKL 78 (472)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555444
No 279
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=40.06 E-value=3.2e+02 Score=30.96 Aligned_cols=54 Identities=17% Similarity=0.346 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh----HHHHHHHHHHHHHHHHHHHh
Q 003781 435 QQLEILHKTVATSVTQQEQQLKDMEEDMQSFVST----KAEATEELRGRLGKLKAMYG 488 (796)
Q Consensus 435 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~k~~~~ 488 (796)
+.+.++++.....++.|..+++.+...++..-.. ..+.++++++.+...+..+.
T Consensus 28 eel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l~ 85 (330)
T PF07851_consen 28 EELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQLF 85 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhHH
Confidence 3444555566666666777777777766666322 33344555555544444333
No 280
>PF15294 Leu_zip: Leucine zipper
Probab=39.93 E-value=5.6e+02 Score=28.37 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=13.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Q 003781 479 RLGKLKAMYGSGIKALDGIAGEL 501 (796)
Q Consensus 479 ~~~~~k~~~~~~~e~i~~~~~~~ 501 (796)
.+.+|++.+..--+.|+.++..+
T Consensus 254 ay~NMk~~ltkKn~QiKeLRkrl 276 (278)
T PF15294_consen 254 AYRNMKEILTKKNEQIKELRKRL 276 (278)
T ss_pred HHHHhHHHHHhccHHHHHHHHHh
Confidence 45566666666666666666544
No 281
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.62 E-value=7.3e+02 Score=29.61 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 003781 322 MELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLI 377 (796)
Q Consensus 322 ~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~L~~le~~l~~~~~~l~e~~~~i 377 (796)
++|+...+-+.++.......+..+.+++.++++.-.+.-.++.+.+.+..+....|
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~Ri 392 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRI 392 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44555555454444555555556665555555444444444444444444444433
No 282
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=38.66 E-value=7e+02 Score=29.14 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 341 KLEKTEKKLEETEHALSDLEEKHRQAN 367 (796)
Q Consensus 341 ~l~~~~~~l~~~~~~L~~le~~l~~~~ 367 (796)
+-......+...+.+|.+|+++..++.
T Consensus 42 ~~~ai~a~~~~~E~~l~~Lq~e~~~l~ 68 (459)
T KOG0288|consen 42 ESRAIKAKLQEKELELNRLQEENTQLN 68 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444555554444443
No 283
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=37.29 E-value=5.5e+02 Score=27.57 Aligned_cols=69 Identities=13% Similarity=0.157 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHHH
Q 003781 475 ELRGRLGKLKAMYGSGIKALDGIAGELDGNSRSTFGDLNSEVSKHSHALEDLFKGIASEADSLLN--DLQSSL 545 (796)
Q Consensus 475 ~l~~~~~~~k~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 545 (796)
.+..++.++++...+..++++...+..+..-....-+|..++--.+ +--++.+.|+|+..+|. -+.+.+
T Consensus 117 ~~~~ei~k~r~e~~~ml~evK~~~E~y~k~~k~~~~gi~aml~Vf~--LF~lvmt~g~d~m~fl~v~~ly~~i 187 (230)
T PF03904_consen 117 IAQNEIKKVREENKSMLQEVKQSHEKYQKRQKSMYKGIGAMLFVFM--LFALVMTIGSDFMDFLHVDHLYKAI 187 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHhcccchhhhhHHHHHHHH
Confidence 3555566667777777777777777777776666666665554333 44456677778777765 444444
No 284
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=37.23 E-value=3.3e+02 Score=24.99 Aligned_cols=11 Identities=9% Similarity=0.622 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 003781 300 KKAMAEKIERM 310 (796)
Q Consensus 300 ~k~~~~~ie~l 310 (796)
.+.+..+++.+
T Consensus 38 ~r~l~~~~e~l 48 (108)
T PF02403_consen 38 RRELQQELEEL 48 (108)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 285
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=37.19 E-value=2.1e+02 Score=27.10 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 302 AMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTE 346 (796)
Q Consensus 302 ~~~~~ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~ 346 (796)
.+-+.+..++..+...-.++.+|+..+.....+...|+-+...++
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr 49 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLR 49 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555444444444443333333
No 286
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=36.95 E-value=6.5e+02 Score=28.27 Aligned_cols=28 Identities=14% Similarity=0.355 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003781 438 EILHKTVATSVTQQEQQLKDMEEDMQSF 465 (796)
Q Consensus 438 ~~~~~~~~~~~~~q~~~~~~~~~~~~~~ 465 (796)
+.....+...+..|...+..+......|
T Consensus 250 ~~~~~~v~~~~~~Q~~ll~~i~~~n~~f 277 (339)
T cd09238 250 DSVREAVSKNISSQDDLLSRLRALNEKF 277 (339)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444
No 287
>PRK00846 hypothetical protein; Provisional
Probab=36.85 E-value=2.4e+02 Score=25.23 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 303 MAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTE 346 (796)
Q Consensus 303 ~~~~ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~ 346 (796)
+.++|..+|..+.-.+..+++|....-.+++..+.+...+..+.
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~ 54 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL 54 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666655555555555555544444444444433333
No 288
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=36.42 E-value=8.2e+02 Score=29.30 Aligned_cols=10 Identities=20% Similarity=0.365 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 003781 622 RQLLEKVAEL 631 (796)
Q Consensus 622 ~~l~~~i~~l 631 (796)
.-||-+|..+
T Consensus 358 AGLLHDIGK~ 367 (514)
T TIGR03319 358 AGLLHDIGKA 367 (514)
T ss_pred HHHHHhcCcc
Confidence 4445455443
No 289
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=36.38 E-value=8.5e+02 Score=29.43 Aligned_cols=81 Identities=15% Similarity=0.186 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHhhHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003781 472 ATEELRGRLGKLKAMYGSGIKALDGIAGELDGNSRSTFGDLNSEVSKHSHALE-DLFKGIASEADSLLNDLQSSLYKQEE 550 (796)
Q Consensus 472 ~~~~l~~~~~~~k~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (796)
.++++.+.+...++...+..+.+..++.. ...+...++.+.+.+.....-++ .-+-++-.+|-++|.+.-..+.+.-.
T Consensus 383 ~l~~~~~~l~~i~~~q~~~~e~L~~Lrkd-El~Are~l~~~~~~l~eikR~mek~nLPGlPe~~l~l~~~~~~~i~~l~~ 461 (570)
T COG4477 383 NLEEIEKALTDIEDEQEKVQEHLTSLRKD-ELEARENLERLKSKLHEIKRYMEKSNLPGLPETFLSLFFTAGHEIQDLMK 461 (570)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhhhhHHHHHHH
Confidence 34455555555555555555555555432 22334556666555544444333 22445556666666666666655444
Q ss_pred HHH
Q 003781 551 KLT 553 (796)
Q Consensus 551 e~~ 553 (796)
++.
T Consensus 462 eLs 464 (570)
T COG4477 462 ELS 464 (570)
T ss_pred HHh
Confidence 443
No 290
>PF04394 DUF536: Protein of unknown function, DUF536; InterPro: IPR007489 This is a C-terminal region from several bacterial proteins of unknown function that may be involved in a theta-type replication mechanism.
Probab=36.20 E-value=1.5e+02 Score=23.95 Aligned_cols=40 Identities=43% Similarity=0.498 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 312 LESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEE 351 (796)
Q Consensus 312 ~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~ 351 (796)
..+..++.++.++...++.+++........++.++.++++
T Consensus 3 ~Ql~~kd~qI~~l~kLLDQQQ~L~L~~~k~le~L~~el~E 42 (45)
T PF04394_consen 3 EQLEEKDKQIEELQKLLDQQQQLALQDNKKLEELKAELEE 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667888888888888877666666666666655554
No 291
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=35.96 E-value=8.6e+02 Score=29.39 Aligned_cols=149 Identities=8% Similarity=0.047 Sum_probs=86.8
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHhhHHHHHHHHHHHHHHHHHhhHHHH---------H
Q 003781 465 FVSTKAEATEELRGRLGKLKAMYGSGIKALDGIAGELDGNSRSTFGDLNSEVSKHSHALEDLFKGIASEA---------D 535 (796)
Q Consensus 465 ~~~~~~~~~~~l~~~~~~~k~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 535 (796)
++..-.-++...+.++..+-+.+...++.+....+. +.+....+.++.+.++....++...+..++++. .
T Consensus 325 ~l~sp~~aL~~A~rEvl~~~d~ie~ml~~~~~~~~~-~~~~~~~i~~~e~~vd~~~~~Ik~YL~~ls~~~Lse~es~r~~ 403 (533)
T COG1283 325 ALDSPVVALANAAREVLRLGDSIEQMLERLYEYIEG-DAKKVKEIRKLEDAVDRLYEEIKLYLARLSKEGLSEEESRRWA 403 (533)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence 445556677888888888888888888888888777 778788888888888888888887776655432 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 003781 536 SLLNDLQSSLYKQEEKLTAYAQQQREAHSRAVENARSVSKVTVNFFKTLDMHASNLTKIVEEAQTVNDQKLFEFEKKFEE 615 (796)
Q Consensus 536 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 615 (796)
.+++ ....+..+-.-+..+.++.+.+....+.-.+.--+-...+|+-..+.+....+++.........++-+-++++++
T Consensus 404 ~iid-~a~~lE~IgDiie~l~~~~~kk~~~~~~fse~~~~el~~l~~~~~~n~~~a~~~l~~~D~~~ar~lv~~k~~~r~ 482 (533)
T COG1283 404 EIID-AAINLEHIGDIIERLLELADKKIANGRAFSEDGLEELDALFALTLENLRLAISVLVTGDLELARRLVERKKRVRR 482 (533)
T ss_pred HHHH-HHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1111 111121111112223344444444444444444444455555555555555555555554444444444444433
No 292
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=35.65 E-value=9.3e+02 Score=29.69 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 303 MAEKIERMELESESKDKQLMELQELYNSQLLLTAELS 339 (796)
Q Consensus 303 ~~~~ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~ 339 (796)
+++++.+++...+.+.-|..-|.+..+.+..+..+|+
T Consensus 109 yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE 145 (861)
T KOG1899|consen 109 YQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLE 145 (861)
T ss_pred HHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHH
Confidence 4577788887777776666666666665554444443
No 293
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=35.58 E-value=7.9e+02 Score=28.83 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003781 424 ILIQMFQSQLTQQLEILHKTVA 445 (796)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~ 445 (796)
.+...|...+...+..+..++.
T Consensus 165 Ql~~~~~~~~~~~i~~i~~ki~ 186 (424)
T PF03915_consen 165 QLYSEFQSEVKESISSIREKIK 186 (424)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554443
No 294
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=34.99 E-value=5.9e+02 Score=27.18 Aligned_cols=139 Identities=15% Similarity=0.152 Sum_probs=85.3
Q ss_pred HHHHhHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 003781 576 VTVNFFKTLDMHASNLTKIVEEAQTVNDQKLFEFEKKFEESAANEERQLLEKVAELLASSNARKKQLVQMAVQDLRESAS 655 (796)
Q Consensus 576 ~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~q~~~~~~~~~~~~~~~~ 655 (796)
....+|.++.+...++..+...-.....-.|.+.-..|-.-...-+.-|..-+..+. ..-..|.++-..+. -...+.
T Consensus 77 ~L~kals~lae~~Ek~~~l~~r~A~~d~~~L~e~L~~Y~r~~~A~K~ll~rR~ral~-~~e~A~~~L~KaR~--k~kev~ 153 (218)
T cd07663 77 VIKKYLLKVAELFEKLRKVEDRVASDQDLKLTELLRYYMLNIEAAKDLLYRRARALA-DYENSNKALDKARL--KSKDVK 153 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh--hhhhHH
Confidence 345666666666666666555444455566667777665555555444444444433 33444555555553 133444
Q ss_pred hhhHhHHHhhhhhhhhhhhHHHhHHHHHHHhhhhhhhhhhhHhhhhhcHHHHHHHHHHhhhhhhHhHHHHHH
Q 003781 656 SRTSQLQKEMSTMQDSTFSVKAEWSAHMNKTESHYLEDTSAVENGKKDLEVVLQNCLKQAKMGAQQWRTAQE 727 (796)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (796)
+-....++....-+.|+..+|.+|..|-.+ =|.+-+..+-.++..-+++|+.+.+.|..+-.
T Consensus 154 ~aE~~~~ea~~~Fe~IS~~~k~El~rF~~~----------Rv~~Fk~~lve~~E~~ik~ak~~~~~~~~~~~ 215 (218)
T cd07663 154 QAEAHQQECCQKFEKLSESAKQELISFKRR----------RVAAFRKNLIEMTELEIKHAKNNVSLLQSCID 215 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666788888899999888543 23334556666778888899999888887654
No 295
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=34.85 E-value=6e+02 Score=27.24 Aligned_cols=84 Identities=11% Similarity=0.124 Sum_probs=58.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhhhHhHHHhhhhhhhhhhhHHHhHHH
Q 003781 602 NDQKLFEFEKKFEESAANEERQLLEKVAELLASSNARKKQLVQMAVQDLRESASSRTSQLQKEMSTMQDSTFSVKAEWSA 681 (796)
Q Consensus 602 ~~~~l~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (796)
....+..-++.|+......+ .+......-=+....+|..-+..++...+..+......++..+..++.+...-.++|..
T Consensus 119 ~~k~~~ksKk~Ye~~Cke~~-~a~~~~~~~~~~~~~ke~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~~~w~~~~~~ 197 (240)
T cd07672 119 QFKKTMESKKNYEQKCRDKD-EAEQAVNRNANLVNVKQQEKLFAKLAQSKQNAEDADRLYMQNISVLDKIREDWQKEHVK 197 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777765554432 22222332111223566677899999999999999999999999999999999999987
Q ss_pred HHHHh
Q 003781 682 HMNKT 686 (796)
Q Consensus 682 ~~~~~ 686 (796)
+...-
T Consensus 198 ~c~~f 202 (240)
T cd07672 198 ACEFF 202 (240)
T ss_pred HHHHH
Confidence 76554
No 296
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=34.76 E-value=5.3e+02 Score=26.62 Aligned_cols=44 Identities=16% Similarity=0.036 Sum_probs=18.8
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003781 506 RSTFGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQSSLYKQE 549 (796)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (796)
...|+.+...+...+..+..........|-.-+.+...-+...+
T Consensus 69 ~~~L~~~~~~~~~~~~~~~~l~~~~~~~f~e~Lkey~~y~~svk 112 (200)
T cd07624 69 APLLEGVSSAVERCTAALEVLLSDHEFVFLPPLREYLLYSDAVK 112 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444555455454444444433333333333333333333333
No 297
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=34.09 E-value=4e+02 Score=32.28 Aligned_cols=10 Identities=30% Similarity=0.308 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 003781 404 DVSNLFAKIE 413 (796)
Q Consensus 404 ~v~~L~~kl~ 413 (796)
|++.|..++.
T Consensus 263 D~~~L~~~~~ 272 (555)
T TIGR03545 263 DLKRLENKYA 272 (555)
T ss_pred HHHHHHHHhC
Confidence 3555555443
No 298
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=34.07 E-value=4.3e+02 Score=26.38 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003781 306 KIERMELESESKDKQLM 322 (796)
Q Consensus 306 ~ie~le~~l~~~~~~l~ 322 (796)
+|..+..++.....+..
T Consensus 80 ei~~L~~el~~l~~~~k 96 (169)
T PF07106_consen 80 EIKELREELAELKKEVK 96 (169)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444333333333333
No 299
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=33.83 E-value=1e+03 Score=29.75 Aligned_cols=217 Identities=15% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCcCCcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 267 YSEIDRLKQEVYAAREKNGIYIPRD-----RYLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEK 341 (796)
Q Consensus 267 ~~EI~~Lk~el~~~r~k~gv~~~~~-----~~~~~e~e~k~~~~~ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~ 341 (796)
...+.+|+..+...+...+...|.. .|.....+.-...+....++.+|.+++..+....+..-..+....-.+.+
T Consensus 48 ~e~~~~lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~ 127 (916)
T KOG0249|consen 48 EEMNTKLQRDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPK 127 (916)
T ss_pred HHHHHHHhhhhhhHHhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHh
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 342 LEKTE--KKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIERKDKIE 419 (796)
Q Consensus 342 l~~~~--~~l~~~~~~L~~le~~l~~~~~~l~e~~~~i~~l~~~e~~l~~~~~~l~~~l~~~~~~v~~L~~kl~rk~~~~ 419 (796)
|..+- ..+.+.+..|..-...+....+.-...+..+..+......+.......+..++-..+...+|.+..++.-.+.
T Consensus 128 l~qs~rae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlh 207 (916)
T KOG0249|consen 128 LQQSLRAETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLH 207 (916)
T ss_pred hHhHHhhhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhhHH
Q 003781 420 EGNRILIQMFQSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSGI 491 (796)
Q Consensus 420 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~ 491 (796)
...+....+-...+.+.++.+. ++-..+....+.+..|.......+..|+.....-.+.+..+.
T Consensus 208 lkermaAle~kn~L~~e~~s~k--------k~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~~~~~~mrd~~ 271 (916)
T KOG0249|consen 208 LKERMAALEDKNRLEQELESVK--------KQLEEMRHDKDKLRTDIEDLRGELDQLRRSSLEKEQELRDHL 271 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhcchh
No 300
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=33.55 E-value=3.3e+02 Score=23.92 Aligned_cols=10 Identities=30% Similarity=0.421 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 003781 306 KIERMELESE 315 (796)
Q Consensus 306 ~ie~le~~l~ 315 (796)
.|..+..+-+
T Consensus 13 ~Ia~L~eEGe 22 (74)
T PF12329_consen 13 QIAQLMEEGE 22 (74)
T ss_pred HHHHHHHHHH
Confidence 3444433333
No 301
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=33.08 E-value=6.9e+02 Score=27.39 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=20.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 003781 466 VSTKAEATEELRGRLGKLKAMYGSGIKALDGIAG 499 (796)
Q Consensus 466 ~~~~~~~~~~l~~~~~~~k~~~~~~~e~i~~~~~ 499 (796)
++-++-.+.+|..++..+++.--..+..+..++.
T Consensus 115 YPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~ 148 (258)
T PF15397_consen 115 YPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQ 148 (258)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555677888887777765555544444443
No 302
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=33.00 E-value=2.6e+02 Score=33.65 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003781 348 KLEETEHALSDLEEKHRQ 365 (796)
Q Consensus 348 ~l~~~~~~L~~le~~l~~ 365 (796)
.+.+.+.+|..++..+.+
T Consensus 122 ~i~~~q~eL~~Lk~~ieq 139 (907)
T KOG2264|consen 122 LIPQKQLELSALKGEIEQ 139 (907)
T ss_pred HHHHhHHHHHHHHhHHHH
Confidence 333333333333333333
No 303
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=32.85 E-value=6.2e+02 Score=26.80 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 003781 262 MIKDLYSEIDRLKQEVYAAREK 283 (796)
Q Consensus 262 lik~l~~EI~~Lk~el~~~r~k 283 (796)
.|..+-.++..++.++......
T Consensus 46 ~i~~aP~~~~~l~~~l~~l~~~ 67 (240)
T PF12795_consen 46 QIDQAPKEIRELQKELEALKSQ 67 (240)
T ss_pred HHHHhHHHHHHHHHHHHhhhcc
Confidence 4455556666666666665443
No 304
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=32.78 E-value=1.8e+02 Score=32.69 Aligned_cols=6 Identities=33% Similarity=0.412 Sum_probs=2.5
Q ss_pred HHHHHH
Q 003781 405 VSNLFA 410 (796)
Q Consensus 405 v~~L~~ 410 (796)
+++|..
T Consensus 286 i~~L~~ 291 (344)
T PF12777_consen 286 ISGLSG 291 (344)
T ss_dssp HHCCHH
T ss_pred Hhhhcc
Confidence 344443
No 305
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=32.07 E-value=9e+02 Score=28.42 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003781 260 SAMIKDLYSEIDRLKQEV 277 (796)
Q Consensus 260 ~~lik~l~~EI~~Lk~el 277 (796)
..++..+..+++.++++.
T Consensus 142 d~l~~~ld~e~~~~~~e~ 159 (447)
T KOG2751|consen 142 DVLLNKLDKEVEDAEDEV 159 (447)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555544
No 306
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=31.96 E-value=3.8e+02 Score=24.07 Aligned_cols=55 Identities=16% Similarity=0.271 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 314 SESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANA 368 (796)
Q Consensus 314 l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~L~~le~~l~~~~~ 368 (796)
++....++..+...........++++.++..--.++...+..+-+++.....++.
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~ 60 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQ 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444456666666666666666666666666655555443
No 307
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=31.94 E-value=7.8e+02 Score=27.71 Aligned_cols=27 Identities=7% Similarity=0.336 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003781 439 ILHKTVATSVTQQEQQLKDMEEDMQSF 465 (796)
Q Consensus 439 ~~~~~~~~~~~~q~~~~~~~~~~~~~~ 465 (796)
-+...+...+..|...+..+......|
T Consensus 261 p~~~~l~~~~~~Q~~ll~el~~~~~~f 287 (356)
T cd09237 261 PLQNRLEATIFKQSSLINELKIELDKL 287 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444
No 308
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=31.84 E-value=5.9e+02 Score=26.28 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 304 AEKIERMELESESKDKQLMELQELYNSQ 331 (796)
Q Consensus 304 ~~~ie~le~~l~~~~~~l~~l~~~~~~~ 331 (796)
...++.+...++.....+.+++..++..
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555555444433
No 309
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=31.61 E-value=9.4e+02 Score=28.55 Aligned_cols=9 Identities=11% Similarity=0.220 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 003781 557 QQQREAHSR 565 (796)
Q Consensus 557 ~~~~~~~~~ 565 (796)
++++..+++
T Consensus 513 qkLKs~leK 521 (527)
T PF15066_consen 513 QKLKSRLEK 521 (527)
T ss_pred HHHHHHHHH
Confidence 334444443
No 310
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=31.37 E-value=6.9e+02 Score=26.89 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 003781 301 KAMAEKIERMELESES 316 (796)
Q Consensus 301 k~~~~~ie~le~~l~~ 316 (796)
..+..++..++.+...
T Consensus 8 ~Ele~rL~q~eee~~~ 23 (246)
T PF00769_consen 8 QELEERLRQMEEEMRR 23 (246)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 311
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=31.15 E-value=6.2e+02 Score=26.30 Aligned_cols=83 Identities=23% Similarity=0.259 Sum_probs=0.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003781 290 RDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANAT 369 (796)
Q Consensus 290 ~~~~~~~e~e~k~~~~~ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~L~~le~~l~~~~~~ 369 (796)
.+.+.....+.+.+..++..-+.....++..+.++...+...+.+...+..+.+....++..++.....+++.+..++..
T Consensus 102 k~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~ 181 (190)
T PF05266_consen 102 KDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELE 181 (190)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhH
Q 003781 370 IKE 372 (796)
Q Consensus 370 l~e 372 (796)
...
T Consensus 182 F~~ 184 (190)
T PF05266_consen 182 FQS 184 (190)
T ss_pred HHH
No 312
>KOG2220 consensus Predicted signal transduction protein [General function prediction only]
Probab=30.80 E-value=1.2e+03 Score=29.35 Aligned_cols=56 Identities=20% Similarity=0.152 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhhHHHHHHhHHHHHH
Q 003781 540 DLQSSLYKQEEKLTAYAQQQREAHSRAVENARSVSKVTVNFFKTLDMHASNLTKIVE 596 (796)
Q Consensus 540 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~~~~~ 596 (796)
.+.+.++....+...+-..++.+.....+....++ .-..|++++...+.++..-+.
T Consensus 625 ~~~~~~~~~~~~re~~l~~L~~a~~~~~el~~~~~-~g~~fY~~l~~~~~~~~~~~~ 680 (714)
T KOG2220|consen 625 KERSFLSPSSKKREKLLSTLAAAYDSYRELSKKLS-EGTEFYNDLTNRLVNLANRVS 680 (714)
T ss_pred hcccccchhhHHHHHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHhc
Confidence 33344444444444555555555554444444444 234577777777777765543
No 313
>PRK12704 phosphodiesterase; Provisional
Probab=30.75 E-value=1e+03 Score=28.61 Aligned_cols=9 Identities=11% Similarity=0.099 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 003781 643 VQMAVQDLR 651 (796)
Q Consensus 643 ~~~~~~~~~ 651 (796)
+.+-++++.
T Consensus 363 ~AgLLHDIG 371 (520)
T PRK12704 363 RAGLLHDIG 371 (520)
T ss_pred HHHHHHccC
Confidence 333334333
No 314
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.45 E-value=8.6e+02 Score=27.73 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhHhhHHHHHH
Q 003781 452 EQQLKDMEEDMQSFVSTKAEATE 474 (796)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~ 474 (796)
++++..+...++-+-....++++
T Consensus 259 Eqq~~~L~~niDIL~~k~~eal~ 281 (365)
T KOG2391|consen 259 EQQLQSLQKNIDILKSKVREALE 281 (365)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHh
Confidence 34444444444433333333333
No 315
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=30.38 E-value=3.9e+02 Score=23.69 Aligned_cols=21 Identities=33% Similarity=0.319 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 003781 262 MIKDLYSEIDRLKQEVYAARE 282 (796)
Q Consensus 262 lik~l~~EI~~Lk~el~~~r~ 282 (796)
.|.+|..|.-.||-.+.-+.+
T Consensus 8 ~i~~L~KENF~LKLrI~fLee 28 (75)
T PF07989_consen 8 QIDKLKKENFNLKLRIYFLEE 28 (75)
T ss_pred HHHHHHHhhhhHHHHHHHHHH
Confidence 345555555555555544443
No 316
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=29.63 E-value=7.4e+02 Score=26.69 Aligned_cols=91 Identities=9% Similarity=0.261 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHH
Q 003781 391 AIELRTELENAASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVSTKA 470 (796)
Q Consensus 391 ~~~l~~~l~~~~~~v~~L~~kl~rk~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~ 470 (796)
...+...+.+-...++.++.|+.. +.|...-..+.+.|...+.+++ -+...+..|+++..
T Consensus 10 id~~lKkv~EG~~~F~~i~~K~~~-----~~n~~QKEK~E~DLKkEIKKLQ---------------R~RdQIK~W~~~~d 69 (233)
T PF04065_consen 10 IDRTLKKVQEGVEEFDEIYEKVES-----ATNQNQKEKLEADLKKEIKKLQ---------------RLRDQIKTWLSSND 69 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-----ccCcchHHHHHHHHHHHHHHHH---------------HHHHHHHHHccCcc
Confidence 344445555556667777777763 4555555666666666666655 23344445554322
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhh
Q 003781 471 EATEELRGRLGKLKAMYGSGIKALDGIAGELDGN 504 (796)
Q Consensus 471 ~~~~~l~~~~~~~k~~~~~~~e~i~~~~~~~~~~ 504 (796)
-. + +..+...+..|-..++..+.+-...+.+
T Consensus 70 iK--d-k~~L~e~Rk~IE~~MErFK~vEkesKtK 100 (233)
T PF04065_consen 70 IK--D-KKKLLENRKLIEEQMERFKVVEKESKTK 100 (233)
T ss_pred cc--c-HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 21 1 2234444555555555555555555544
No 317
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=29.20 E-value=18 Score=44.53 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 003781 402 ASDVSNLFAKIERKDK 417 (796)
Q Consensus 402 ~~~v~~L~~kl~rk~~ 417 (796)
.++++.|..+.++-.+
T Consensus 297 rDElD~lR~~a~r~~k 312 (713)
T PF05622_consen 297 RDELDELREKADRADK 312 (713)
T ss_dssp ----------------
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3334444444443333
No 318
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=29.04 E-value=1.1e+03 Score=28.57 Aligned_cols=14 Identities=14% Similarity=0.057 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHh
Q 003781 621 ERQLLEKVAELLAS 634 (796)
Q Consensus 621 ~~~l~~~i~~l~~~ 634 (796)
.+...+++.+-++.
T Consensus 526 ~~~~~~~l~~~l~e 539 (555)
T TIGR03545 526 IEKAKAKLKAKLNE 539 (555)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 319
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=29.01 E-value=8.3e+02 Score=27.07 Aligned_cols=31 Identities=26% Similarity=0.143 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 003781 470 AEATEELRGRLGKLKAMYGSGIKALDGIAGE 500 (796)
Q Consensus 470 ~~~~~~l~~~~~~~k~~~~~~~e~i~~~~~~ 500 (796)
...+-++++.+..++..+....+.+..+...
T Consensus 179 l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~ 209 (322)
T COG0598 179 LERLGELRRSLVYLRRALAPLRDVLLRLARR 209 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 3344566666666666666655555555443
No 320
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=28.85 E-value=7.4e+02 Score=26.42 Aligned_cols=32 Identities=31% Similarity=0.514 Sum_probs=13.0
Q ss_pred HHHHHHHHHhHhhHHHHH-HHHHHHHHHHHHHH
Q 003781 456 KDMEEDMQSFVSTKAEAT-EELRGRLGKLKAMY 487 (796)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~-~~l~~~~~~~k~~~ 487 (796)
..|...++.|+....+-+ .+=.+++..+++.+
T Consensus 108 ~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l 140 (251)
T PF11932_consen 108 EQMIDELEQFVELDLPFLLEERQERLARLRAML 140 (251)
T ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhh
Confidence 344444444554322222 23334444444444
No 321
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=28.81 E-value=3.6e+02 Score=29.21 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003781 392 IELRTELENAASDVSNLFAKIE 413 (796)
Q Consensus 392 ~~l~~~l~~~~~~v~~L~~kl~ 413 (796)
..++.+++....|.-+|+.|+.
T Consensus 110 ~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 110 SSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444544443
No 322
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=28.74 E-value=6.1e+02 Score=30.07 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 003781 260 SAMIKDLYSEIDRLKQEVYAARE 282 (796)
Q Consensus 260 ~~lik~l~~EI~~Lk~el~~~r~ 282 (796)
+.-+..+..+|..|+.++...+.
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~ 92 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLED 92 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777765543
No 323
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=28.48 E-value=9.7e+02 Score=27.70 Aligned_cols=145 Identities=14% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 335 TAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIER 414 (796)
Q Consensus 335 ~~~l~~~l~~~~~~l~~~~~~L~~le~~l~~~~~~l~e~~~~i~~l~~~e~~l~~~~~~l~~~l~~~~~~v~~L~~kl~r 414 (796)
...+..++......+.+....++.+-+....+.+.+..+...+.++-.+++...++.....+.+++..+.++....---.
T Consensus 134 ~~~~~~~~~~~~q~lq~~~~~~er~~~~y~~~~qElq~k~t~~~afn~tikife~q~~~~e~~~ka~~d~~~~eqG~qg~ 213 (464)
T KOG4637|consen 134 INAVGKKLREYHQQLQEKSLEYERLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQCGTQENLSKAYIDRFRREQGSQGN 213 (464)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHhccCCc
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Q 003781 415 KDKIEEGNRILIQMFQSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMY 487 (796)
Q Consensus 415 k~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~ 487 (796)
-...-..........++.+......+. ...+.++.+-....++.......+-+|...++.++...
T Consensus 214 ~e~~~~~~a~N~~~~ks~i~ei~~sl~--------~l~d~lk~~~q~~~~~~enr~~e~m~l~k~~nslkp~l 278 (464)
T KOG4637|consen 214 SEKEIGRIANNYDKLKSRIREIHDSLT--------RLEDDLKALIQALRSNSENRLCELMELDKAMNSLKPDL 278 (464)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHH--------hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcCchH
No 324
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=28.36 E-value=4e+02 Score=23.23 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHhhCC
Q 003781 266 LYSEIDRLKQEVYAAREKNG 285 (796)
Q Consensus 266 l~~EI~~Lk~el~~~r~k~g 285 (796)
|..++..|+..+..+..+++
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~ 22 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNS 22 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554444433
No 325
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=28.06 E-value=7e+02 Score=25.92 Aligned_cols=84 Identities=17% Similarity=0.236 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003781 347 KKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIERKDKIEEGNRILI 426 (796)
Q Consensus 347 ~~l~~~~~~L~~le~~l~~~~~~l~e~~~~i~~l~~~e~~l~~~~~~l~~~l~~~~~~v~~L~~kl~rk~~~~~~n~~~~ 426 (796)
.++......+-.++..+..+++.+.+.-....+ -.+++-.+...+....+++..|..|+++--.+-.....+.
T Consensus 72 ~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~-------q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~ 144 (189)
T TIGR02132 72 EDIANVASLVINLEEKVDLIEEFFDDKFDELEA-------QQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQ 144 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccch
Confidence 344444444555555555544444443222221 1234445556666667777777777776555555555555
Q ss_pred HHHHHHHHHHH
Q 003781 427 QMFQSQLTQQL 437 (796)
Q Consensus 427 ~~~~~~~~~~~ 437 (796)
.+++..+..++
T Consensus 145 ~~~~~~~~~~~ 155 (189)
T TIGR02132 145 DELKETIQKQI 155 (189)
T ss_pred hHHHHHHHHHH
Confidence 55444443333
No 326
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=27.85 E-value=1.1e+03 Score=28.12 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 407 NLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILHKTVAT 446 (796)
Q Consensus 407 ~L~~kl~rk~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~ 446 (796)
.+...++..+....+........+.++..+.+.+.+++..
T Consensus 85 ~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile 124 (475)
T PRK10361 85 EVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFE 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444445555555566666666555443
No 327
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=27.67 E-value=1.3e+03 Score=29.05 Aligned_cols=52 Identities=29% Similarity=0.373 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003781 318 DKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANAT 369 (796)
Q Consensus 318 ~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~L~~le~~l~~~~~~ 369 (796)
.++-+++.+.++.......+....++.+-+.|.+++..+.++.-.+.+.+..
T Consensus 198 ~kqa~~~~~~we~l~~~~~~w~k~v~~~le~l~elq~a~~el~~~l~~ae~~ 249 (966)
T KOG4286|consen 198 RKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEATDELDLKLRQAEVI 249 (966)
T ss_pred HHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh
Confidence 3455667777777777777777777777777777777777777666665543
No 328
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=27.63 E-value=5.8e+02 Score=24.79 Aligned_cols=13 Identities=23% Similarity=0.389 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 003781 334 LTAELSEKLEKTE 346 (796)
Q Consensus 334 ~~~~l~~~l~~~~ 346 (796)
++..++..|...+
T Consensus 28 qk~~le~qL~E~~ 40 (119)
T COG1382 28 QKQQLEAQLKEIE 40 (119)
T ss_pred HHHHHHHHHHHHH
Confidence 3333443333333
No 329
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=27.59 E-value=1.1e+03 Score=28.17 Aligned_cols=10 Identities=20% Similarity=0.497 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 003781 518 KHSHALEDLF 527 (796)
Q Consensus 518 ~~~~~~~~~~ 527 (796)
-|...++.++
T Consensus 273 ihp~riee~~ 282 (514)
T TIGR03319 273 IHPARIEEMV 282 (514)
T ss_pred CCHHHHHHHH
Confidence 3444444433
No 330
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=27.48 E-value=1.1e+03 Score=27.82 Aligned_cols=35 Identities=31% Similarity=0.324 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 297 EAEKKAMAEKIERMELESESKDKQLMELQELYNSQ 331 (796)
Q Consensus 297 e~e~k~~~~~ie~le~~l~~~~~~l~~l~~~~~~~ 331 (796)
+.+.+.+.+.|+.|...+-..-.+-..+...|+..
T Consensus 172 ~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~ 206 (446)
T KOG4438|consen 172 EEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKM 206 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777665544444444444444443
No 331
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=27.44 E-value=6.9e+02 Score=25.62 Aligned_cols=24 Identities=8% Similarity=0.230 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHH
Q 003781 620 EERQLLEKVAELLASSNARKKQLV 643 (796)
Q Consensus 620 ~~~~l~~~i~~l~~~~~~~q~~~~ 643 (796)
-|+......-+.+...-+.|..++
T Consensus 137 ~r~e~qk~~~~yv~~~k~~q~~~~ 160 (165)
T PF09602_consen 137 TREEWQKVLDAYVEQAKSSQKELA 160 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444433
No 332
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=27.33 E-value=9.4e+02 Score=27.17 Aligned_cols=48 Identities=10% Similarity=0.176 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhhHHhHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003781 493 ALDGIAGELDGNSRSTFGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQSSLYK 547 (796)
Q Consensus 493 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (796)
...+.+..++......+..+. .++.+++.+-..+|+++..++...|..
T Consensus 163 ~a~n~a~~~~~~~~~af~gm~-------dal~~fvttGk~~f~d~~~sil~dLa~ 210 (332)
T TIGR01541 163 TATNVASAAAQLATNAFGGMA-------SNIAQMLTTGKANWKSFAVSVLSDIAD 210 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhHhhHHHHHHHHHHHHHH
Confidence 334444444444444444444 344445555555666666666555543
No 333
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=27.16 E-value=1.1e+03 Score=28.11 Aligned_cols=10 Identities=20% Similarity=0.507 Sum_probs=5.5
Q ss_pred EcCceeecCC
Q 003781 47 YNEEISDLLA 56 (796)
Q Consensus 47 YNE~V~DLL~ 56 (796)
||+.++|.+.
T Consensus 28 ~n~~f~d~f~ 37 (582)
T PF09731_consen 28 QNDNFRDFFE 37 (582)
T ss_pred cChHHHHHHH
Confidence 5555555553
No 334
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=27.13 E-value=1.1e+03 Score=27.79 Aligned_cols=6 Identities=67% Similarity=0.905 Sum_probs=3.5
Q ss_pred CCCCCC
Q 003781 197 VPYRDS 202 (796)
Q Consensus 197 IPYRdS 202 (796)
.|||++
T Consensus 84 ~p~r~~ 89 (447)
T KOG2751|consen 84 PPVRDS 89 (447)
T ss_pred Cccccc
Confidence 466655
No 335
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.03 E-value=7.7e+02 Score=26.05 Aligned_cols=111 Identities=16% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCcCCccchHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q 003781 260 SAMIKDLYSEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERMELESESKD------KQLMELQELYNSQLL 333 (796)
Q Consensus 260 ~~lik~l~~EI~~Lk~el~~~r~k~gv~~~~~~~~~~e~e~k~~~~~ie~le~~l~~~~------~~l~~l~~~~~~~~~ 333 (796)
...|.+|..|+.+++.++...|..++-..-+-+....-..++.++.....+..+-=+.+ .-+..-+......+.
T Consensus 32 e~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~ 111 (218)
T KOG1655|consen 32 EKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESLKDTQATVAAMKD 111 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhH
Q 003781 334 LTAELSEKLEKTE-KKLEETEHALSDLEEKHRQANATI 370 (796)
Q Consensus 334 ~~~~l~~~l~~~~-~~l~~~~~~L~~le~~l~~~~~~l 370 (796)
-..+++....+.. .+++.++..+.++-+.-..+++.+
T Consensus 112 ~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~L 149 (218)
T KOG1655|consen 112 TNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVL 149 (218)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
No 336
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=26.99 E-value=1.4e+03 Score=28.92 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Q 003781 520 SHALEDLFKGIASEADSLLNDLQSSLY------KQEEKLTAYAQQQREAHSRAV 567 (796)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~e~~~~~~~~~~~~~~~~ 567 (796)
-..++..+.+++-....++.. ..... +.++.+..+.+|.++..+.++
T Consensus 614 ~~eie~v~~S~gL~~~~~~k~-e~a~~~~~p~~~~k~KIe~L~~eIkkkIe~av 666 (762)
T PLN03229 614 ELELAGVLKSMGLEVIGVTKK-NKDTAEQTPPPNLQEKIESLNEEINKKIERVI 666 (762)
T ss_pred HHHHHHHHhccCchhhhhhhh-hhcccccCCChhhHHHHHHHHHHHHHHHHHHh
Confidence 334566666666555433322 22221 137777788887777776544
No 337
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=26.94 E-value=8.8e+02 Score=26.73 Aligned_cols=104 Identities=21% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 003781 307 IERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKA 386 (796)
Q Consensus 307 ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~L~~le~~l~~~~~~l~e~~~~i~~l~~~e~~ 386 (796)
++.....+.=++..+.++.+...... .......+.+...+++...+..+....+++.+.+..+++-...+.+...--..
T Consensus 161 Lesa~vkV~WLR~~L~Ei~Ea~e~~~-~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~ 239 (269)
T PF05278_consen 161 LESAKVKVDWLRSKLEEILEAKEIYD-QHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGE 239 (269)
T ss_pred HHHcCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 387 LVERAIELRTELENAASDVSNLFAK 411 (796)
Q Consensus 387 l~~~~~~l~~~l~~~~~~v~~L~~k 411 (796)
+......+..++..+...|..++.+
T Consensus 240 l~~~~~~l~k~~~~~~sKV~kf~~~ 264 (269)
T PF05278_consen 240 LEMESTRLSKTIKSIKSKVEKFHGK 264 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
No 338
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.59 E-value=4.5e+02 Score=23.24 Aligned_cols=18 Identities=17% Similarity=0.232 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003781 343 EKTEKKLEETEHALSDLE 360 (796)
Q Consensus 343 ~~~~~~l~~~~~~L~~le 360 (796)
+.++.+-+.++......+
T Consensus 49 eaL~~eneqlk~e~~~WQ 66 (79)
T COG3074 49 EALERENEQLKEEQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 339
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=26.33 E-value=1.2e+03 Score=28.24 Aligned_cols=12 Identities=42% Similarity=0.573 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHH
Q 003781 264 KDLYSEIDRLKQ 275 (796)
Q Consensus 264 k~l~~EI~~Lk~ 275 (796)
|.|+.||+++-.
T Consensus 4 RKLq~eIdr~lk 15 (575)
T KOG2150|consen 4 RKLQQEIDRCLK 15 (575)
T ss_pred hHHHHHHHHHHH
Confidence 455556655443
No 340
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=26.17 E-value=7.4e+02 Score=25.55 Aligned_cols=230 Identities=17% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 003781 462 MQSFVSTKAEATEELRGRLGKLKAMYGSGIKALDGIAGELDGNSRSTFGDLNSEVSKHSHALEDLFKGIASEADSLLNDL 541 (796)
Q Consensus 462 ~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (796)
+..++..-..++......+..--..+...-+.+..+-..++. ....++.+...-.....++.+ |...
T Consensus 1 ~~~~~~~~~~s~~~~~~~~~e~D~~F~~~~~~~~~le~~Lk~-l~~~~~~l~~~~~~l~~~~~e------------~~~~ 67 (236)
T PF09325_consen 1 VKGLFGKLFDSVSNSSPKMKEPDEWFEEIKDYVDKLEEQLKK-LYKSLERLVKRRQELASALAE------------FGSS 67 (236)
T ss_pred ChhHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH------------HHHH
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 003781 542 QSSLYKQEEK--LTAYAQQQREAHSRAVENARSVSKVTVNFFKTLDMHASNLTKIVEEAQTVNDQKLFEFEKKFEESAAN 619 (796)
Q Consensus 542 ~~~~~~~~~e--~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 619 (796)
...++..... +...-.+.-..+...-+.....+.....-|...-..-.++...+...-......+..++.........
T Consensus 68 ~~~la~~E~~~~l~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kk 147 (236)
T PF09325_consen 68 FSQLAKSEEEKSLSEALSQLAEAFEKISELLEEQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKK 147 (236)
T ss_pred HHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhhhHhHHHhhhhhhhhhhhHHHhHHHHHHHhhhhhhhhhhhHhh
Q 003781 620 EERQLLEKVAELLASSNARKKQLVQMAVQDLRESASSRTSQLQKEMSTMQDSTFSVKAEWSAHMNKTESHYLEDTSAVEN 699 (796)
Q Consensus 620 ~~~~l~~~i~~l~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 699 (796)
.. +...+..+...+ .+++..+...+..-....+..-...+.++..++.++..| ...-+.+
T Consensus 148 k~-----~~~kl~~~~~~~-----~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf----------~~~k~~d 207 (236)
T PF09325_consen 148 KA-----QLEKLKASGKNR-----QDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERF----------EKEKVKD 207 (236)
T ss_pred HH-----HHhcccccchhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH
Q ss_pred hhhcHHHHHHHHHHhhhhhhHhHHH
Q 003781 700 GKKDLEVVLQNCLKQAKMGAQQWRT 724 (796)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (796)
-++-|...++--+...+.....|..
T Consensus 208 ~k~~l~~~~~~~i~~~~~~~~~We~ 232 (236)
T PF09325_consen 208 FKSMLEEYAESQIEYQKKMLEAWET 232 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
No 341
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=26.10 E-value=1.5e+03 Score=29.00 Aligned_cols=421 Identities=14% Similarity=0.145 Sum_probs=0.0
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 248 KNKPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQEL 327 (796)
Q Consensus 248 kn~p~vN~~~~~~~lik~l~~EI~~Lk~el~~~r~k~gv~~~~~~~~~~e~e~k~~~~~ie~le~~l~~~~~~l~~l~~~ 327 (796)
+|.|.+-.+ +..+--+...+++.+..++..+-.+ .-...+-......+..++.......-.++++...
T Consensus 950 qn~eis~Ed--~kkLhaE~daeLe~~~ael~eleqk----------~le~~eDea~aRh~kefE~~mrdhrselEe~kKe 1017 (1424)
T KOG4572|consen 950 QNDEISEED--KKKLHAEIDAELEKEFAELIELEQK----------ALECKEDEAFARHEKEFEIEMRDHRSELEEKKKE 1017 (1424)
T ss_pred hcCcccHHH--HHHhhHHHHHHHHHHHHHHHHHHHH----------HHHHhhhHHHHHHHHHHHHHHHHhHhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q 003781 328 YNSQLLLTAELSEKL-EKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANL-----LKSEKALVERAIELRTELENA 401 (796)
Q Consensus 328 ~~~~~~~~~~l~~~l-~~~~~~l~~~~~~L~~le~~l~~~~~~l~e~~~~i~~l-----~~~e~~l~~~~~~l~~~l~~~ 401 (796)
.+....+..++...+ +.-+.++...+=...+.-.--.+++.+++..+...... ....+.+.....-+...++..
T Consensus 1018 ~eaiineiee~eaeIiQekE~el~e~efka~d~Sd~r~kie~efAa~eaemdeik~~~~edrakqkei~k~L~ehelenL 1097 (1424)
T KOG4572|consen 1018 LEAIINEIEELEAEIIQEKEGELIEDEFKALDESDPRAKIEDEFAAIEAEMDEIKDGKCEDRAKQKEIDKILKEHELENL 1097 (1424)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHhhhccccCcchhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHhhHHHHHHHHHHH
Q 003781 402 ASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQS--FVSTKAEATEELRGR 479 (796)
Q Consensus 402 ~~~v~~L~~kl~rk~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~--~~~~~~~~~~~l~~~ 479 (796)
..++..|.++|...-. -+++.-.. ...+-.++..+.. |++.....-.-+.+.
T Consensus 1098 rnEieklndkIkdnne----------------~~QVglae----------~nslmTiekDmcaselfneheeeS~ifdaa 1151 (1424)
T KOG4572|consen 1098 RNEIEKLNDKIKDNNE----------------GDQVGLAE----------ENSLMTIEKDMCASELFNEHEEESGIFDAA 1151 (1424)
T ss_pred HHHHHHHHHHhhcCCC----------------cchHHHHH----------hccCCccchhHHHHHHHHHhhhhcchHHHH
Q ss_pred HHHHHHHHhhHHHHHH---HHHHHHhhhHHhHHhhHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 003781 480 LGKLKAMYGSGIKALD---GIAGELDGNSRSTFGDLNSEVSKHSHA----LEDLFKGIASEADSLLNDLQSSLYKQEEKL 552 (796)
Q Consensus 480 ~~~~k~~~~~~~e~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 552 (796)
.++.-....-.++.++ ..+-.+..+-+..|..+..-+..-... -+..++.+..+.+...+++..........+
T Consensus 1152 ~nKiakiHe~AfEieknlkeQaielank~dpeLraiead~deeitQkdee~eaiIa~ld~d~dh~~de~ekdreqLi~kL 1231 (1424)
T KOG4572|consen 1152 GNKIAKIHEIAFEIEKNLKEQAIELANKGDPELRAIEADIDEEITQKDEETEAIIAMLDIDIDHDRDEIEKDREQLIIKL 1231 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhhHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 553 TAYAQQQREAHSRAVENARSVSKVTVNFFKTLDMHASNLTKIVEEAQTVNDQKLFEFEKKFEESAANEERQLLEKVAELL 632 (796)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~l~ 632 (796)
+--..+.+.....+++.-..+-+--.....+--+.-.-=--....++-....-+...+...++..++=-++|..+-+.+-
T Consensus 1232 Ncekdeaiq~alkafe~e~ei~E~al~eKsk~Lenqiakg~a~d~tqgdaaSliaeaqekleeEkakflenle~qekRk~ 1311 (1424)
T KOG4572|consen 1232 NCEKDEAIQGALKAFEDEPEIRECALKEKSKALENQIAKGMAEDFTQGDAASLIAEAQEKLEEEKAKFLENLECQEKRKC 1311 (1424)
T ss_pred hccHHHHHhhhHHHhccCHHHHHHHHHHHHHHHHHHHhcchhhhccCcchHHHHHHHhhhhHHHHHHHHHHhHHHHHHhh
Q ss_pred HhhHHHHHHHHHHHHHHHHHhHhhhhHhHHHhhhhhhhhhhhHHHhHHHHHHH-------hhhhhhhhhhhHhhhhhcHH
Q 003781 633 ASSNARKKQLVQMAVQDLRESASSRTSQLQKEMSTMQDSTFSVKAEWSAHMNK-------TESHYLEDTSAVENGKKDLE 705 (796)
Q Consensus 633 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~e~~~~~~~~~~~~~ 705 (796)
..-.---+.+++..++... ..+-.+--+...+-.+.-+.+-.-+.+ +++......++.+.++.
T Consensus 1312 eeamNl~tSliaek~~~~n-------iVithea~naenIf~dlpdkl~sk~qq~eRd~dlienaaedRariiaekkk--- 1381 (1424)
T KOG4572|consen 1312 EEAMNLLTSLIAEKIGCAN-------IVITHEAHNAENIFCDLPDKLFSKEQQIERDGDLIENAAEDRARIIAEKKK--- 1381 (1424)
T ss_pred HHHHHHHHHHHHHHhccce-------eEeeHhhhcchhhhcCCcHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHh---
Q ss_pred HHHHHHHHhhhhh
Q 003781 706 VVLQNCLKQAKMG 718 (796)
Q Consensus 706 ~~~~~~~~~~~~~ 718 (796)
++.|+.+-++.
T Consensus 1382 --lde~s~K~~sn 1392 (1424)
T KOG4572|consen 1382 --LDECSIKKPSN 1392 (1424)
T ss_pred --hhhhhhcCccc
No 342
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=26.08 E-value=5.5e+02 Score=24.02 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003781 307 IERMELESESKDKQLMELQEL 327 (796)
Q Consensus 307 ie~le~~l~~~~~~l~~l~~~ 327 (796)
++.+...+...+..+..+...
T Consensus 37 ~~~l~~~~~~~~~Rl~~lE~~ 57 (106)
T PF10805_consen 37 IEKLEERLDEHDRRLQALETK 57 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 343
>PRK00106 hypothetical protein; Provisional
Probab=26.06 E-value=1.2e+03 Score=28.11 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=9.8
Q ss_pred cHHHHH--HHHHHhhhhhhHh
Q 003781 703 DLEVVL--QNCLKQAKMGAQQ 721 (796)
Q Consensus 703 ~~~~~~--~~~~~~~~~~~~~ 721 (796)
.+..++ -|+++.++.+...
T Consensus 430 ~~a~IV~~AD~lsa~Rpgar~ 450 (535)
T PRK00106 430 VIAVIVAAADALSSARPGARN 450 (535)
T ss_pred hHHHHHHHHHHhccCCCCCCc
Confidence 344444 5566666644433
No 344
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=25.89 E-value=1.2e+03 Score=28.01 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=7.8
Q ss_pred hhhhHHHHHHHHHHHh
Q 003781 176 INKSLLTLGRVINALV 191 (796)
Q Consensus 176 INkSLlaLg~VI~aL~ 191 (796)
|+.||..|.++...++
T Consensus 215 ~~~sl~~l~~~~~k~a 230 (518)
T PF10212_consen 215 ILSSLVSLTNGTGKIA 230 (518)
T ss_pred HHHHHHHHHhhhHHHH
Confidence 4455555555444443
No 345
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=25.73 E-value=1.3e+03 Score=28.35 Aligned_cols=16 Identities=13% Similarity=0.115 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHHHhhh
Q 003781 489 SGIKALDGIAGELDGN 504 (796)
Q Consensus 489 ~~~e~i~~~~~~~~~~ 504 (796)
...+.+..+.+.+..+
T Consensus 206 ~l~~~l~~~~e~le~K 221 (617)
T PF15070_consen 206 ELQEKLHNLKEKLELK 221 (617)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3333444444444444
No 346
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=25.72 E-value=4.5e+02 Score=28.51 Aligned_cols=31 Identities=10% Similarity=0.220 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 338 LSEKLEKTEKKLEETEHALSDLEEKHRQANA 368 (796)
Q Consensus 338 l~~~l~~~~~~l~~~~~~L~~le~~l~~~~~ 368 (796)
|..+++.++.++..++..++++.-++++++.
T Consensus 59 l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444333
No 347
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=25.67 E-value=1.2e+02 Score=34.04 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 337 ELSEKLEKTEKKLEETEHALSDLEEKHRQAN 367 (796)
Q Consensus 337 ~l~~~l~~~~~~l~~~~~~L~~le~~l~~~~ 367 (796)
+|...+..+...+.+++..|..+...+..++
T Consensus 60 dLss~L~~l~~sl~~~~s~L~sLsstV~~lq 90 (326)
T PF04582_consen 60 DLSSDLQDLASSLADMTSELNSLSSTVTSLQ 90 (326)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443333333
No 348
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=25.50 E-value=1.5e+03 Score=28.75 Aligned_cols=7 Identities=14% Similarity=0.178 Sum_probs=3.3
Q ss_pred CCCCCCC
Q 003781 194 SGHVPYR 200 (796)
Q Consensus 194 ~~hIPYR 200 (796)
.-+||..
T Consensus 357 G~~vpa~ 363 (782)
T PRK00409 357 GLPIPAN 363 (782)
T ss_pred CCCcccC
Confidence 3355554
No 349
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=25.49 E-value=8.9e+02 Score=26.25 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 003781 401 AASDVSNLFAKIE 413 (796)
Q Consensus 401 ~~~~v~~L~~kl~ 413 (796)
....+..|..+++
T Consensus 105 ~~~~~~~L~~Ev~ 117 (248)
T PF08172_consen 105 QQQTISSLRREVE 117 (248)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333433333
No 350
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.48 E-value=8.9e+02 Score=26.24 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003781 341 KLEKTEKKLEETEHALSDL 359 (796)
Q Consensus 341 ~l~~~~~~l~~~~~~L~~l 359 (796)
-|+.....+..+...+.++
T Consensus 108 ~L~~~a~~~~~~s~~l~~l 126 (240)
T cd07667 108 PLEGVSACIGNCSTALEEL 126 (240)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444444433333
No 351
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=25.40 E-value=8.2e+02 Score=25.85 Aligned_cols=22 Identities=5% Similarity=0.077 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 003781 554 AYAQQQREAHSRAVENARSVSK 575 (796)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~ 575 (796)
.+..++..+....-+.+.=|+.
T Consensus 179 SLe~~LeQK~kEn~ELtkICDe 200 (207)
T PF05010_consen 179 SLEESLEQKTKENEELTKICDE 200 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444433344444443
No 352
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=25.30 E-value=1.4e+03 Score=28.46 Aligned_cols=16 Identities=13% Similarity=0.325 Sum_probs=9.3
Q ss_pred HHhhhhhhHhHHHHHH
Q 003781 712 LKQAKMGAQQWRTAQE 727 (796)
Q Consensus 712 ~~~~~~~~~~~~~~~~ 727 (796)
+++....+.+.++|+.
T Consensus 553 ~~~s~~tG~RlkE~Q~ 568 (670)
T KOG0239|consen 553 VSKSGVTGERLKEAQN 568 (670)
T ss_pred cCcCCCchhhhHHHHH
Confidence 3444555666666665
No 353
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=25.23 E-value=8.3e+02 Score=25.81 Aligned_cols=72 Identities=17% Similarity=0.244 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003781 473 TEELRGRLGKLKAMYGSGIKALDGIAGELDGNSRSTFGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQSSLYK 547 (796)
Q Consensus 473 ~~~l~~~~~~~k~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (796)
+...+.++..|-..|......+..+-..++..+.-.--+|+. .-..++..-+.++..|...++.++...+.+
T Consensus 121 L~~tr~~Y~~L~~aM~~Ae~km~PVL~~~~D~vL~LKHNLNA---~AI~sL~~e~~~~~~di~~Li~~m~~sI~e 192 (201)
T PF11172_consen 121 LAETRRRYAQLIKAMRRAESKMQPVLAAFRDQVLYLKHNLNA---QAIASLQGEFSSIESDISQLIKEMERSIAE 192 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhccccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444333222222221 233446666667777777777777777743
No 354
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=25.19 E-value=9.8e+02 Score=26.64 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003781 437 LEILHKTVATSVTQQEQQLKDMEEDMQSF 465 (796)
Q Consensus 437 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~~ 465 (796)
.+.+...+...+..|...+..+......|
T Consensus 252 f~~~~~~i~~~~~~Q~~ll~~i~~~~~~f 280 (342)
T cd08915 252 FDKDLTYVEKTKKKQIELIKEIDAANQEF 280 (342)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444
No 355
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=24.95 E-value=4.3e+02 Score=25.21 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 303 MAEKIERMELESESKDKQLMELQELYNSQLLLTAEL 338 (796)
Q Consensus 303 ~~~~ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l 338 (796)
+=+.+..++.++...-+++..|+........+...|
T Consensus 6 lfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L 41 (110)
T PRK13169 6 IFDALDDLEQNLGVLLKELGALKKQLAELLEENTAL 41 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555444444444444444444333333333
No 356
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=24.88 E-value=1.4e+03 Score=28.39 Aligned_cols=95 Identities=20% Similarity=0.197 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHhhHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHH
Q 003781 471 EATEELRGRLGKLKAMYGSGIKALDGIAGELDGNSRSTFGDLNSEVSKHSHALEDLF----KGIASEADSLLNDLQSSLY 546 (796)
Q Consensus 471 ~~~~~l~~~~~~~k~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 546 (796)
..++++..++..+++++..-++.+.....+|..-+...--.|...+...-..+.+.. ..+..+..+-++.++..+.
T Consensus 160 ~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~ 239 (660)
T KOG4302|consen 160 EKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLK 239 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHH
Confidence 566788888888888888777777777777666665544444444433333332222 2233444455555555555
Q ss_pred HHHH----HHHHHHHHHHHHHHH
Q 003781 547 KQEE----KLTAYAQQQREAHSR 565 (796)
Q Consensus 547 ~~~~----e~~~~~~~~~~~~~~ 565 (796)
+++. .+..++.+..+.|..
T Consensus 240 ~~k~qr~~kl~~l~~~~~~LWn~ 262 (660)
T KOG4302|consen 240 EEKKQRLQKLQDLRTKLLELWNL 262 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 5433 245666677777764
No 357
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=24.76 E-value=1.5e+03 Score=28.63 Aligned_cols=27 Identities=30% Similarity=0.299 Sum_probs=14.2
Q ss_pred CCCcceeeeeecCCCCCChHhHHHHHHHH
Q 003781 213 GGKTKTCIIATVSPSIHCLEETLSTLDYA 241 (796)
Q Consensus 213 GGnskT~mIatVSPs~~~~eETlsTL~fA 241 (796)
+++.++++| ..|+...-.-++.|+-.+
T Consensus 324 ~~~~~~~iI--TGpN~gGKTt~lktigl~ 350 (782)
T PRK00409 324 GFDKTVLVI--TGPNTGGKTVTLKTLGLA 350 (782)
T ss_pred CCCceEEEE--ECCCCCCcHHHHHHHHHH
Confidence 444343333 356666666666666544
No 358
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=24.69 E-value=1.5e+03 Score=28.79 Aligned_cols=39 Identities=10% Similarity=0.076 Sum_probs=20.4
Q ss_pred cCHHHHHHHHHhchhccc--ccccccCCCCCCCceEEEEEEE
Q 003781 93 TTADEIYKILEKGSAKRR--TAETLLNKQSSRSHSIFSITIH 132 (796)
Q Consensus 93 ~s~~e~~~lL~~G~~~R~--~asT~~N~~SSRSHsIFtI~v~ 132 (796)
+|.=|++.+=--|...|. ...-.+....+++ +.+.+++.
T Consensus 39 SSIldAI~~ALyG~~~~~~~~~~~~~i~~g~~~-~~V~l~F~ 79 (908)
T COG0419 39 SSILDAITFALYGKTPRLGAFSLDDLIRAGEKS-ASVELEFE 79 (908)
T ss_pred HHHHHHHHHHHcCCCCCccchhhhHHHhcCCcc-EEEEEEEE
Confidence 456666666555666553 2333344444555 55555553
No 359
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=24.57 E-value=1.4e+03 Score=28.39 Aligned_cols=34 Identities=15% Similarity=0.107 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 412 IERKDKIEEGNRILIQMFQSQLTQQLEILHKTVA 445 (796)
Q Consensus 412 l~rk~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 445 (796)
+...-++-.+=.++|...-..+...+++..+.++
T Consensus 114 vK~qveiAmE~~EL~~~vlg~l~~EIe~~~~~vf 147 (683)
T PF08580_consen 114 VKKQVEIAMEWEELWNDVLGDLDNEIEECIRLVF 147 (683)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444455555544444444444444443
No 360
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=24.54 E-value=1.2e+03 Score=27.61 Aligned_cols=49 Identities=12% Similarity=0.134 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhCCCcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 271 DRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQE 326 (796)
Q Consensus 271 ~~Lk~el~~~r~k~gv~~~~~~~~~~e~e~k~~~~~ie~le~~l~~~~~~l~~l~~ 326 (796)
..-+..|...|.++|+.-|.... ......|..++.++-..+-++..|+.
T Consensus 259 ~~Ar~aL~~fRn~~gvlDP~~~a-------~~~~~lI~~Le~qLa~~~aeL~~L~~ 307 (434)
T PRK15178 259 GAARLELLKIQHIQKDIDPKETI-------TAIYQLIAGFETQLAEAKAEYAQLMV 307 (434)
T ss_pred HHHHHHHHHHHHhCCCcChHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344555666677877664322 22334455555555555555554443
No 361
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.50 E-value=1.5e+03 Score=28.48 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=16.2
Q ss_pred hHhhhhhcHHHHHHHHHHhhhhh
Q 003781 696 AVENGKKDLEVVLQNCLKQAKMG 718 (796)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~ 718 (796)
+++.|-..|...|+.||..-+.+
T Consensus 377 yI~~qek~l~ellek~v~e~~~~ 399 (793)
T KOG2180|consen 377 YIESQEKELSELLEKFVSEEKWD 399 (793)
T ss_pred hhhHHHHHHHHHHHHHHhhhccC
Confidence 45666677777888888766654
No 362
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=24.35 E-value=1.5e+02 Score=33.32 Aligned_cols=62 Identities=18% Similarity=0.309 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 337 ELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTEL 398 (796)
Q Consensus 337 ~l~~~l~~~~~~l~~~~~~L~~le~~l~~~~~~l~e~~~~i~~l~~~e~~l~~~~~~l~~~l 398 (796)
++...|..+...+..++..+..+...+..+...+......|..++..-..+.-...+++..+
T Consensus 74 ~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdV 135 (326)
T PF04582_consen 74 DMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDV 135 (326)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhh
Confidence 33333444444444444444444444444444444444444444433333333333333333
No 363
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=24.34 E-value=6.4e+02 Score=24.19 Aligned_cols=39 Identities=36% Similarity=0.506 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 319 KQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALS 357 (796)
Q Consensus 319 ~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~L~ 357 (796)
.+++..++.|-...+-..-|..+|.++.+.+.+....|.
T Consensus 29 ~eLEkYkqly~eElk~r~SLs~kL~ktnerLaevstkLl 67 (111)
T PF12001_consen 29 TELEKYKQLYLEELKLRKSLSNKLNKTNERLAEVSTKLL 67 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 445555666665555555566666666666555554443
No 364
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=24.28 E-value=1.1e+03 Score=26.91 Aligned_cols=8 Identities=63% Similarity=1.103 Sum_probs=3.0
Q ss_pred HhHhhHHH
Q 003781 579 NFFKTLDM 586 (796)
Q Consensus 579 ~f~~~~~~ 586 (796)
+|+.++..
T Consensus 311 N~~tt~~v 318 (330)
T PF07851_consen 311 NFFTTLKV 318 (330)
T ss_pred hHHHHHHH
Confidence 33333333
No 365
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=23.98 E-value=2.7e+02 Score=33.92 Aligned_cols=357 Identities=15% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 263 IKDLYSEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKL 342 (796)
Q Consensus 263 ik~l~~EI~~Lk~el~~~r~k~gv~~~~~~~~~~e~e~k~~~~~ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l 342 (796)
|.....|+..|-.++......-...+....+...+...-.-...--.+...+..+...++.+.........+..++..++
T Consensus 35 i~~~~~E~~~L~~~lg~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~L~~~~~~L~~~le~l~~~~~eR~~~~~~L~~~~ 114 (619)
T PF03999_consen 35 IADAEAELADLSSELGEEQEHLCRELEKEPLSLEEEKDILQLEKSMPLKEQLPKLRPQLEELRKEKEERMQEFKELQEQL 114 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhhcchhHHHHHHhcccccccccccchhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 003781 343 EKTEKKLEETEHALSDLEEKHRQAN--ATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFA-KIERKDKIE 419 (796)
Q Consensus 343 ~~~~~~l~~~~~~L~~le~~l~~~~--~~l~e~~~~i~~l~~~e~~l~~~~~~l~~~l~~~~~~v~~L~~-kl~rk~~~~ 419 (796)
+.+..++......+.........+- ..+.+....+..+..--..-......+...+.....++..-.. ......-..
T Consensus 115 ~~l~~~Lg~~~~~~~~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~R~~~v~~l~~~I~~l~~~L~~~~~~~~~e~~l~~ 194 (619)
T PF03999_consen 115 EQLCEELGELPLCLNPFDIDESDLPSLEELEELRQHLQRLQEEKERRLEEVRELREEIISLMEELGIDPERTSFEKDLLS 194 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhccccccccCCccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccchhhccc
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH----HhhHHHHHH
Q 003781 420 EGNRILIQMFQSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAM----YGSGIKALD 495 (796)
Q Consensus 420 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~----~~~~~e~i~ 495 (796)
-........+....-+.+..+...+.....+....+..+...+...-.......++....+.....+ +....+++.
T Consensus 195 ~~~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~ 274 (619)
T PF03999_consen 195 YSEDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIEELWNRLDVPEEEREAFLEENSGLSLDTIEALEEELE 274 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCcchHHHHHHHHHHHH
Q ss_pred HHHHHHhhhHHhHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 496 GIAGELDGNSRSTFGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQS--SLYKQEEKLTAYAQQQREAHSRAVENARSV 573 (796)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 573 (796)
++..--........++...-+...+...+=+-..... |...+.+.-+ .|..++.|+..+.. .-+.+...++.+..-
T Consensus 275 RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~eer~~-F~~~~~d~~~E~lL~~hE~Ei~~Lk~-~~~~~k~Il~~v~k~ 352 (619)
T PF03999_consen 275 RLEELKKQNLKEFIEKKRQEIEELWDKCHYSEEERQA-FTPFYIDSYTEELLELHEEEIERLKE-EYESRKPILELVEKW 352 (619)
T ss_dssp -------------------------------------------------------------HHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCHHHHHH-HHHHhcccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q ss_pred hHHHHH--hHhhHHHHHHhHHH----HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003781 574 SKVTVN--FFKTLDMHASNLTK----IVEEAQTVNDQKLFEFEKKFEESAANEERQLLEKVAELLAS 634 (796)
Q Consensus 574 ~~~~~~--f~~~~~~~~~~l~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~l~~~ 634 (796)
...... ++......-+++.. ++.++ +.+......--.|.+++...|..
T Consensus 353 ~~l~~~~~~Le~~~~D~~Rl~~RGg~LLkEE-------------k~rk~i~k~lPkle~~L~~~l~~ 406 (619)
T PF03999_consen 353 ESLWEEMEELEESSKDPSRLNNRGGHLLKEE-------------KERKRIQKKLPKLEEELKKKLEE 406 (619)
T ss_dssp HHHHHHHHHHHHHHH-CCGG------HHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChhhhcccccHHHHHH-------------HHHHHHHHHhhHHHHHHHHHHHH
No 366
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=23.49 E-value=1.3e+02 Score=30.79 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003781 323 ELQELYNSQLLLTAELSEKL 342 (796)
Q Consensus 323 ~l~~~~~~~~~~~~~l~~~l 342 (796)
+++..|+.......-|+.+|
T Consensus 4 D~EsklN~AIERnalLE~EL 23 (166)
T PF04880_consen 4 DFESKLNQAIERNALLESEL 23 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 34444444444444444444
No 367
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=23.45 E-value=5.5e+02 Score=23.11 Aligned_cols=34 Identities=15% Similarity=0.291 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 003781 433 LTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFV 466 (796)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~ 466 (796)
+...++..+.++.....+-..+.+.....++.|+
T Consensus 36 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V 69 (94)
T PF05957_consen 36 AEEALDDARDRAEDAADQAREQAREAAEQTEDYV 69 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333444444444444444
No 368
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=23.24 E-value=2.5e+02 Score=32.12 Aligned_cols=10 Identities=20% Similarity=0.288 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 003781 402 ASDVSNLFAK 411 (796)
Q Consensus 402 ~~~v~~L~~k 411 (796)
.+.++.+.+.
T Consensus 150 Eeris~lEd~ 159 (370)
T PF02994_consen 150 EERISELEDR 159 (370)
T ss_dssp HHHHHHHHHH
T ss_pred HhHHHHHHHH
Confidence 3333333333
No 369
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=22.93 E-value=5.9e+02 Score=24.92 Aligned_cols=18 Identities=17% Similarity=0.195 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003781 306 KIERMELESESKDKQLME 323 (796)
Q Consensus 306 ~ie~le~~l~~~~~~l~~ 323 (796)
.+..+...++.....+..
T Consensus 45 ~~~~~~~~l~~i~~~l~~ 62 (141)
T PF13874_consen 45 EIAQHRERLKEINDKLEE 62 (141)
T ss_dssp -HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344333333333333
No 370
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=22.79 E-value=7.2e+02 Score=24.27 Aligned_cols=67 Identities=19% Similarity=0.342 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 474 EELRGRLGKLKAMYGSGIKALDGIAGELDGNSRSTFGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQSSLYKQEEKLT 553 (796)
Q Consensus 474 ~~l~~~~~~~k~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 553 (796)
+.+..++..++..+.+..+.+..+...-+.+ -..+-|..+...++.+..+|...+.+++..++
T Consensus 55 e~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r-----------------~yk~eYk~llk~y~~~~~~L~k~I~~~e~iI~ 117 (126)
T PF09403_consen 55 EAAEAELAELKELYAEIEEKIEKLKQDSKVR-----------------WYKDEYKELLKKYKDLLNKLDKEIAEQEQIID 117 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGS-----------------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhcchh-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566665555555554444432221 12345666777888888999999998888888
Q ss_pred HHHH
Q 003781 554 AYAQ 557 (796)
Q Consensus 554 ~~~~ 557 (796)
.|..
T Consensus 118 ~fe~ 121 (126)
T PF09403_consen 118 NFEK 121 (126)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 371
>PHA03332 membrane glycoprotein; Provisional
Probab=22.61 E-value=1.9e+03 Score=28.97 Aligned_cols=45 Identities=11% Similarity=0.200 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 003781 435 QQLEILHKTVATSVTQQEQQLKDMEEDMQSFVSTKAEATEELRGR 479 (796)
Q Consensus 435 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 479 (796)
+.+.++..++...+.+-+.++..++.++..-+..-...++.|.++
T Consensus 919 nti~kisatl~~nI~avNgRIs~Led~VN~r~~~v~~~intLA~q 963 (1328)
T PHA03332 919 DTIAKISATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLATQ 963 (1328)
T ss_pred hHHHHHHHHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444555555554444333333333333333
No 372
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=22.58 E-value=7.3e+02 Score=24.25 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003781 394 LRTELENAASDVSNLFAKIE 413 (796)
Q Consensus 394 l~~~l~~~~~~v~~L~~kl~ 413 (796)
+...++.....+.+|..|+.
T Consensus 101 i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 101 IGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555544
No 373
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=22.19 E-value=6.1e+02 Score=23.21 Aligned_cols=10 Identities=30% Similarity=0.325 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 003781 319 KQLMELQELY 328 (796)
Q Consensus 319 ~~l~~l~~~~ 328 (796)
.+++.++...
T Consensus 43 ~~~e~lr~~r 52 (108)
T PF02403_consen 43 QELEELRAER 52 (108)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 374
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=22.17 E-value=5.5e+02 Score=22.62 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 003781 400 NAASDVSNLFAKIE 413 (796)
Q Consensus 400 ~~~~~v~~L~~kl~ 413 (796)
.....+++|-.|++
T Consensus 57 ~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 57 AWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 33334444444443
No 375
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=21.81 E-value=4.3e+02 Score=24.15 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh-CCCcCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 264 KDLYSEIDRLKQEVYAAREK-NGIYIPRDRYLQEEAEKKAMAEKIERMELESESKD 318 (796)
Q Consensus 264 k~l~~EI~~Lk~el~~~r~k-~gv~~~~~~~~~~e~e~k~~~~~ie~le~~l~~~~ 318 (796)
..+.+.+...+..|.+.-.+ .+..+|++.....|.|...+...+...+.++..++
T Consensus 8 d~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lr 63 (85)
T PF15188_consen 8 DGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLR 63 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 34444444444444433221 34556666655556555555555555555544443
No 376
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=21.70 E-value=9e+02 Score=24.96 Aligned_cols=42 Identities=14% Similarity=0.323 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhhHH
Q 003781 450 QQEQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSGI 491 (796)
Q Consensus 450 ~q~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~ 491 (796)
+...++..+...+..|.....+.+..+++++..+++..+---
T Consensus 114 ~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anrwT 155 (188)
T PF03962_consen 114 ELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANRWT 155 (188)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777778888888877777665333
No 377
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=21.24 E-value=1.5e+03 Score=27.49 Aligned_cols=217 Identities=20% Similarity=0.188 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Q 003781 291 DRYLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTE---------KKLEETEHALSDLEE 361 (796)
Q Consensus 291 ~~~~~~e~e~k~~~~~ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~---------~~l~~~~~~L~~le~ 361 (796)
|.|........ +.....-..+....+++..++..-....++.+-|+-.+++++ +.|.+-.+.|.+.+.
T Consensus 146 D~f~~~~~~~~---~~~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~~rLsn~ek 222 (557)
T COG0497 146 DAFAGLEELAQ---EAYQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERKRLSNSEK 222 (557)
T ss_pred HHhcCchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHH
Q ss_pred HHHHHHHhHhHHH------HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 003781 362 KHRQANATIKEKD------FLIANLLKSEKAL------VERAIELRTELENAASDVSNLFAKIERKDKIEEGNRILIQMF 429 (796)
Q Consensus 362 ~l~~~~~~l~e~~------~~i~~l~~~e~~l------~~~~~~l~~~l~~~~~~v~~L~~kl~rk~~~~~~n~~~~~~~ 429 (796)
-.........-.. .....+-.+...| ......+...+++..-.+.....++++.-+--.-........
T Consensus 223 l~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~v 302 (557)
T COG0497 223 LAEAIQNALELLSGEDDTVSALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEV 302 (557)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHhhhH
Q 003781 430 QSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSGIKAL----DGIAGELDGNS 505 (796)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~e~i----~~~~~~~~~~~ 505 (796)
... -..+..+.+++...+...-...+.+..++.. +......+..|++++..++..+...-+.+ +..+..+.+.+
T Consensus 303 e~R-l~~L~~l~RKY~~~~~~l~~~~~~~~~el~~-L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~v 380 (557)
T COG0497 303 EER-LFALKSLARKYGVTIEDLLEYLDKIKEELAQ-LDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEV 380 (557)
T ss_pred HHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHhhH
Q 003781 506 RSTFGDL 512 (796)
Q Consensus 506 ~~~~~~~ 512 (796)
...|..|
T Consensus 381 ~~eL~~L 387 (557)
T COG0497 381 TAELKAL 387 (557)
T ss_pred HHHHHhc
No 378
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.24 E-value=1.5e+03 Score=27.50 Aligned_cols=154 Identities=12% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH----H
Q 003781 307 IERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLL----K 382 (796)
Q Consensus 307 ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~L~~le~~l~~~~~~l~e~~~~i~~l~----~ 382 (796)
|+....-....+..+..++...++|.+...+++++....++.-..+.+..++..++...+...++..-..-.... .
T Consensus 576 i~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~ 655 (741)
T KOG4460|consen 576 ILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSD 655 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 383 SEKALVERAIELRTELENAASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILHKTVATSVTQQEQQLKDMEEDM 462 (796)
Q Consensus 383 ~e~~l~~~~~~l~~~l~~~~~~v~~L~~kl~rk~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~ 462 (796)
+|-....+...+-..++.....+.-+..+.+ +...+....+..+++.--..-+.-++.+...+.+....+..+..++
T Consensus 656 AErdFk~Elq~~~~~~~~L~~~iET~~~~~~---KQ~~H~~~v~~al~K~~Y~l~~~Q~~~iqsiL~~L~~~i~~~~k~V 732 (741)
T KOG4460|consen 656 AERDFKKELQLIPDQLRHLGNAIETVTMKKD---KQQQHMEKVLSALPKPTYILSAYQRKCIQSILKELGEHIREMVKQV 732 (741)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 003781 463 Q 463 (796)
Q Consensus 463 ~ 463 (796)
+
T Consensus 733 K 733 (741)
T KOG4460|consen 733 K 733 (741)
T ss_pred H
No 379
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=20.99 E-value=9.8e+02 Score=25.13 Aligned_cols=78 Identities=12% Similarity=0.172 Sum_probs=46.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhhhHhHHHhhhhhhhhhhhHHHhHHHH
Q 003781 603 DQKLFEFEKKFEESAANEERQLLEKVAELLASSNARKKQLVQMAVQDLRESASSRTSQLQKEMSTMQDSTFSVKAEWSAH 682 (796)
Q Consensus 603 ~~~l~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (796)
...+...+++|.......+. ...-.+....++..-+..++......+......++..+...+.+...--.+|...
T Consensus 120 ~~~l~KaK~~Y~~~c~~~e~-----~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~ 194 (236)
T cd07651 120 EKYLEKAREKYEADCSKINS-----YTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWNREWKAA 194 (236)
T ss_pred HHHHHHHHHHHHHHHHhHHH-----HHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666544433221 1111111223455667777777777788888888888888877777777777666
Q ss_pred HHH
Q 003781 683 MNK 685 (796)
Q Consensus 683 ~~~ 685 (796)
...
T Consensus 195 ~~~ 197 (236)
T cd07651 195 LDD 197 (236)
T ss_pred HHH
Confidence 554
No 380
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=20.67 E-value=33 Score=40.54 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=0.0
Q ss_pred EEEEEEEEcCceeecCCC
Q 003781 40 KVTFLELYNEEISDLLAL 57 (796)
Q Consensus 40 ~vS~lEIYNE~V~DLL~~ 57 (796)
.||++.+....+.|.+..
T Consensus 101 SvSmmDLQD~~~~~~~~s 118 (495)
T PF12004_consen 101 SVSMMDLQDNRVGDMGHS 118 (495)
T ss_dssp ------------------
T ss_pred cceeecCcCccccccccc
Confidence 567777777777766553
No 381
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=20.61 E-value=8.9e+02 Score=24.49 Aligned_cols=111 Identities=20% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 003781 301 KAMAEKIERMELESESKD-KQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIAN 379 (796)
Q Consensus 301 k~~~~~ie~le~~l~~~~-~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~L~~le~~l~~~~~~l~e~~~~i~~ 379 (796)
++..+.|+..+.+...+. .++..+++.-..+.....+|..--.=+++++....+.+.....+++-+......++.....
T Consensus 37 ~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEyke 116 (159)
T PF04949_consen 37 RAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKE 116 (159)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 380 LLKSEKALVERAIELRTELENAASDVSNLFAK 411 (796)
Q Consensus 380 l~~~e~~l~~~~~~l~~~l~~~~~~v~~L~~k 411 (796)
.+++-+........|...|.++..+..++.-|
T Consensus 117 alea~nEknkeK~~Lv~~L~eLv~eSE~~rmK 148 (159)
T PF04949_consen 117 ALEAFNEKNKEKAQLVTRLMELVSESERLRMK 148 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 382
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=20.59 E-value=6.2e+02 Score=27.41 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003781 306 KIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEET 352 (796)
Q Consensus 306 ~ie~le~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~ 352 (796)
++..++..+......+.+|+..++..+.+..+|+..++...-+++.+
T Consensus 41 r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~ 87 (263)
T PRK10803 41 RVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQV 87 (263)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33444444443333344444444444444444444444444333333
No 383
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=20.56 E-value=1.4e+03 Score=26.79 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 003781 267 YSEIDRLKQEVYAARE 282 (796)
Q Consensus 267 ~~EI~~Lk~el~~~r~ 282 (796)
..|+..|+.+|..+|+
T Consensus 150 ~~Ev~~LRreLavLRQ 165 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQ 165 (424)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666666666554
No 384
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=20.23 E-value=1e+03 Score=25.11 Aligned_cols=79 Identities=10% Similarity=0.218 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhhhHhHHHhhhhhhhhhhhHHHhHHHH
Q 003781 603 DQKLFEFEKKFEESAANEERQLLEKVAELLASSNARKKQLVQMAVQDLRESASSRTSQLQKEMSTMQDSTFSVKAEWSAH 682 (796)
Q Consensus 603 ~~~l~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (796)
...|..-++.|.......+. +.......-+....++..-+..++...+..+......+...+...+.+...-..+|...
T Consensus 119 ~~~l~KaKk~Y~~~C~e~e~-a~~~~~~~~~~~~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~~~~~~~ 197 (239)
T cd07647 119 YKKTMKAKKSYEQKCREKDK-AEQAYEKSSSGAQPKEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVEWESEHATA 197 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777655444332 11111111122234555667777777777777777777777777766664444444433
No 385
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.10 E-value=1.9e+03 Score=28.19 Aligned_cols=86 Identities=13% Similarity=0.108 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 003781 473 TEELRGRLGKLKAMYGSGIKALDGIAGELDGNSRSTFGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQSSLYKQEEKL 552 (796)
Q Consensus 473 ~~~l~~~~~~~k~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 552 (796)
.++.+.+...+.+.|.+.=..+++++.+++......+-.+.+.++.+...-+. +-.+++.|.+-++-+
T Consensus 45 ~e~re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~rer------------I~~vK~~L~~~k~ll 112 (982)
T KOG3691|consen 45 TEPRETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNCRER------------IHNVKNNLEACKELL 112 (982)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHH
Confidence 34555556666666666666778888888888777777777666666655443 344555666655566
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003781 553 TAYAQQQREAHSRAVENA 570 (796)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~ 570 (796)
+--+.++++-|..+++.-
T Consensus 113 ~~~rdeLqklw~~~~q~K 130 (982)
T KOG3691|consen 113 NTRRDELQKLWAENSQYK 130 (982)
T ss_pred hcCHHHHHHHHHhhhhHH
Confidence 555666667776655433
No 386
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.08 E-value=4.3e+02 Score=21.17 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003781 321 LMELQELYNSQLLLTAELS 339 (796)
Q Consensus 321 l~~l~~~~~~~~~~~~~l~ 339 (796)
...|...|+....+...|.
T Consensus 14 yd~Lk~~~~~L~~E~~~L~ 32 (45)
T PF02183_consen 14 YDSLKAEYDSLKKENEKLR 32 (45)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334433333333333
Done!