Query 003783
Match_columns 795
No_of_seqs 414 out of 1602
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 03:53:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003783.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003783hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s40_A Diacylglycerol kinase; 100.0 1.9E-46 6.4E-51 401.4 27.1 290 276-788 6-297 (304)
2 2qv7_A Diacylglycerol kinase D 100.0 1E-42 3.6E-47 377.0 28.2 291 278-789 24-316 (337)
3 2bon_A Lipid kinase; DAG kinas 100.0 1.4E-41 4.8E-46 367.9 23.6 287 277-788 28-316 (332)
4 2an1_A Putative kinase; struct 99.0 7.2E-10 2.5E-14 117.4 12.1 111 278-403 5-121 (292)
5 1u0t_A Inorganic polyphosphate 98.9 1.4E-09 4.8E-14 116.5 9.7 116 277-405 3-135 (307)
6 1yt5_A Inorganic polyphosphate 98.8 7.8E-09 2.7E-13 108.2 10.3 98 279-404 1-99 (258)
7 2i2c_A Probable inorganic poly 98.8 1.1E-08 3.7E-13 107.9 9.4 95 279-404 1-96 (272)
8 3afo_A NADH kinase POS5; alpha 97.9 1.7E-05 5.8E-10 87.9 8.3 115 276-404 39-174 (388)
9 1z0s_A Probable inorganic poly 96.4 0.006 2E-07 64.7 8.1 94 278-400 29-122 (278)
10 3pfn_A NAD kinase; structural 95.2 0.13 4.5E-06 56.5 12.6 115 276-404 36-167 (365)
11 1o2d_A Alcohol dehydrogenase, 86.2 3.7 0.00013 44.6 11.3 97 279-380 41-155 (371)
12 1vlj_A NADH-dependent butanol 81.0 3.6 0.00012 45.3 8.5 92 279-375 44-151 (407)
13 3okf_A 3-dehydroquinate syntha 81.0 6.2 0.00021 43.6 10.3 89 277-375 61-157 (390)
14 3ce9_A Glycerol dehydrogenase; 80.6 4 0.00014 43.9 8.5 83 279-375 35-120 (354)
15 3s40_A Diacylglycerol kinase; 78.3 0.65 2.2E-05 49.0 1.4 32 494-535 197-229 (304)
16 3bfj_A 1,3-propanediol oxidore 78.1 8.3 0.00028 41.9 10.2 96 279-379 34-148 (387)
17 3ox4_A Alcohol dehydrogenase 2 76.7 5.8 0.0002 43.3 8.4 95 278-378 31-143 (383)
18 1jq5_A Glycerol dehydrogenase; 73.9 2.4 8E-05 46.0 4.4 84 279-375 32-118 (370)
19 1ta9_A Glycerol dehydrogenase; 73.3 3.3 0.00011 46.4 5.5 83 279-375 92-177 (450)
20 4grd_A N5-CAIR mutase, phospho 69.7 27 0.00094 34.4 10.3 86 277-377 11-100 (173)
21 1sg6_A Pentafunctional AROM po 69.1 7 0.00024 42.8 6.8 94 278-382 36-148 (393)
22 3uhj_A Probable glycerol dehyd 68.8 6.8 0.00023 43.0 6.6 83 279-375 53-138 (387)
23 2bon_A Lipid kinase; DAG kinas 66.9 2.4 8.3E-05 45.2 2.5 32 494-535 219-251 (332)
24 2cod_A Centaurin-delta 1; ARF 64.5 18 0.00062 31.6 7.4 58 162-238 30-95 (115)
25 3qbe_A 3-dehydroquinate syntha 64.2 15 0.00052 40.1 8.2 86 279-375 44-137 (368)
26 1oj7_A Hypothetical oxidoreduc 62.8 9.4 0.00032 41.9 6.3 95 279-380 51-166 (408)
27 1eaz_A Tandem PH domain contai 62.0 11 0.00038 33.2 5.6 59 162-238 35-107 (125)
28 1rrm_A Lactaldehyde reductase; 61.4 8.4 0.00029 41.8 5.5 95 278-378 31-145 (386)
29 1v5u_A SBF1, SET binding facto 61.0 18 0.00061 31.4 6.7 21 218-238 87-107 (117)
30 2gru_A 2-deoxy-scyllo-inosose 60.2 39 0.0013 36.6 10.5 87 278-375 34-128 (368)
31 3hl0_A Maleylacetate reductase 58.8 11 0.00038 40.7 5.9 82 278-375 34-119 (353)
32 3l6u_A ABC-type sugar transpor 55.5 42 0.0014 33.4 9.3 90 276-375 6-97 (293)
33 2an1_A Putative kinase; struct 55.3 12 0.00041 38.9 5.3 96 674-789 171-272 (292)
34 3jzd_A Iron-containing alcohol 55.3 19 0.00065 39.0 7.0 82 278-375 36-121 (358)
35 2qv7_A Diacylglycerol kinase D 55.2 5.8 0.0002 42.2 2.9 32 494-535 214-246 (337)
36 3h75_A Periplasmic sugar-bindi 55.1 62 0.0021 33.4 10.8 90 279-377 4-96 (350)
37 2fep_A Catabolite control prot 54.3 49 0.0017 33.2 9.6 89 274-373 12-101 (289)
38 2dn6_A KIAA0640 protein; PH do 53.9 21 0.00071 30.9 5.9 21 218-238 79-99 (115)
39 1yt5_A Inorganic polyphosphate 53.8 9.8 0.00033 39.2 4.2 94 673-788 142-237 (258)
40 3jy6_A Transcriptional regulat 53.8 66 0.0023 31.8 10.4 86 277-374 6-92 (276)
41 1wgq_A FYVE, rhogef and PH dom 53.7 32 0.0011 29.6 7.0 47 175-238 50-99 (109)
42 1fao_A Dual adaptor of phospho 53.4 34 0.0012 30.2 7.3 59 162-238 39-108 (126)
43 2rsg_A Collagen type IV alpha- 52.4 11 0.00037 31.8 3.7 21 218-238 70-90 (94)
44 3f6r_A Flavodoxin; FMN binding 52.2 25 0.00087 32.1 6.4 88 279-376 2-94 (148)
45 3egc_A Putative ribose operon 52.0 34 0.0012 34.2 7.9 89 276-375 6-95 (291)
46 3c3k_A Alanine racemase; struc 51.2 71 0.0024 31.8 10.2 86 276-373 6-92 (285)
47 1kq3_A Glycerol dehydrogenase; 51.0 5.4 0.00018 43.3 1.8 84 279-375 42-126 (376)
48 3gv0_A Transcriptional regulat 50.2 38 0.0013 33.9 7.9 90 276-374 6-96 (288)
49 1xah_A Sadhqs, 3-dehydroquinat 49.4 34 0.0011 36.7 7.7 84 279-375 32-124 (354)
50 3n7t_A Macrophage binding prot 49.2 71 0.0024 32.7 9.8 92 278-378 9-149 (247)
51 3gbv_A Putative LACI-family tr 48.3 54 0.0019 32.6 8.7 91 276-375 6-102 (304)
52 4a6h_A Phosphatidylinositol 4, 48.2 40 0.0014 30.7 6.9 21 218-238 94-114 (120)
53 1qtn_A Caspase-8; apoptosis, d 47.6 88 0.003 30.2 9.6 61 272-332 16-90 (164)
54 3l49_A ABC sugar (ribose) tran 47.0 86 0.003 31.0 10.0 89 277-375 4-94 (291)
55 1x05_A Pleckstrin; PH domain, 47.0 99 0.0034 27.2 9.4 21 218-238 96-116 (129)
56 3kjx_A Transcriptional regulat 46.9 1.1E+02 0.0036 31.6 11.0 87 276-373 66-153 (344)
57 3dbi_A Sugar-binding transcrip 46.1 1.3E+02 0.0043 30.9 11.4 89 276-374 59-150 (338)
58 3tb6_A Arabinose metabolism tr 46.1 1E+02 0.0034 30.5 10.3 86 279-374 16-106 (298)
59 2rgy_A Transcriptional regulat 45.8 43 0.0015 33.6 7.5 87 277-374 7-97 (290)
60 3p45_A Caspase-6; protease, hu 45.5 88 0.003 30.8 9.3 61 272-332 37-104 (179)
61 3rpe_A MDAB, modulator of drug 45.4 35 0.0012 34.4 6.7 65 276-343 23-90 (218)
62 3od5_A Caspase-6; caspase doma 45.4 83 0.0028 32.8 9.8 113 272-384 14-148 (278)
63 1v89_A Hypothetical protein KI 45.4 71 0.0024 27.3 8.0 67 162-238 29-108 (118)
64 1pls_A Pleckstrin homology dom 45.2 42 0.0014 29.0 6.4 21 218-238 77-97 (113)
65 3clh_A 3-dehydroquinate syntha 45.1 14 0.00048 39.7 3.9 87 278-375 26-119 (343)
66 3brq_A HTH-type transcriptiona 44.9 1.1E+02 0.0036 30.3 10.2 88 276-374 17-108 (296)
67 2fqx_A Membrane lipoprotein TM 44.8 1.6E+02 0.0053 30.4 11.9 88 278-374 4-93 (318)
68 3bil_A Probable LACI-family tr 44.3 80 0.0027 32.8 9.6 87 277-374 65-152 (348)
69 3e61_A Putative transcriptiona 44.3 68 0.0023 31.6 8.6 87 276-375 6-94 (277)
70 3m9w_A D-xylose-binding peripl 44.1 1.2E+02 0.0039 30.7 10.5 87 279-375 3-91 (313)
71 3d8u_A PURR transcriptional re 44.0 68 0.0023 31.5 8.5 86 277-373 2-88 (275)
72 1dyn_A Dynamin; signal transdu 43.7 45 0.0015 31.2 6.5 69 160-238 33-113 (125)
73 2iks_A DNA-binding transcripti 43.6 56 0.0019 32.7 7.9 89 276-374 18-107 (293)
74 2i2c_A Probable inorganic poly 43.2 13 0.00045 38.5 3.2 101 673-788 143-247 (272)
75 3k9c_A Transcriptional regulat 42.8 86 0.003 31.3 9.3 86 276-374 10-95 (289)
76 3qk7_A Transcriptional regulat 42.8 55 0.0019 32.9 7.8 89 276-374 4-95 (294)
77 3fni_A Putative diflavin flavo 42.5 67 0.0023 30.2 7.8 88 278-375 4-95 (159)
78 3kuu_A Phosphoribosylaminoimid 42.2 1.4E+02 0.0046 29.5 9.9 85 278-377 12-100 (174)
79 3ors_A N5-carboxyaminoimidazol 41.7 89 0.0031 30.5 8.5 85 279-378 4-92 (163)
80 2hsg_A Glucose-resistance amyl 41.2 1.2E+02 0.004 31.0 10.2 88 276-374 58-146 (332)
81 1oi4_A Hypothetical protein YH 40.8 35 0.0012 33.0 5.7 96 274-383 19-133 (193)
82 1m72_A Caspase-1; caspase, cys 40.8 78 0.0027 32.9 8.6 62 271-332 24-91 (272)
83 1nw9_B Caspase 9, apoptosis-re 40.6 94 0.0032 32.2 9.2 61 272-332 14-81 (277)
84 1v88_A Oxysterol binding prote 40.4 33 0.0011 31.6 5.1 21 218-238 100-120 (130)
85 1fgy_A GRP1; PH domain, signal 40.3 47 0.0016 29.0 6.0 22 217-238 95-116 (127)
86 2dko_A Caspase-3; low barrier 40.1 82 0.0028 29.8 8.0 61 272-332 9-76 (146)
87 3o74_A Fructose transport syst 39.7 53 0.0018 32.2 7.0 86 279-374 3-89 (272)
88 2x7x_A Sensor protein; transfe 39.6 1.2E+02 0.0041 30.9 9.9 87 277-374 5-94 (325)
89 3g1w_A Sugar ABC transporter; 39.3 71 0.0024 32.0 8.0 89 277-375 3-94 (305)
90 1rw7_A YDR533CP; alpha-beta sa 39.3 71 0.0024 32.1 7.9 44 336-383 98-146 (243)
91 3kke_A LACI family transcripti 39.2 1.3E+02 0.0044 30.2 10.0 88 276-374 13-101 (303)
92 2fn9_A Ribose ABC transporter, 38.9 99 0.0034 30.6 8.9 86 279-374 3-90 (290)
93 3h11_B Caspase-8; cell death, 38.9 1.2E+02 0.0041 31.4 9.7 112 272-383 10-151 (271)
94 2fp3_A Caspase NC; apoptosis, 38.8 74 0.0025 33.9 8.2 112 272-383 53-191 (316)
95 3k4h_A Putative transcriptiona 38.5 84 0.0029 31.1 8.3 88 276-373 6-98 (292)
96 3lp6_A Phosphoribosylaminoimid 38.5 99 0.0034 30.5 8.3 85 279-378 8-96 (174)
97 2nn3_C Caspase-1; cysteine pro 38.4 1E+02 0.0034 32.9 9.2 61 272-332 53-119 (310)
98 1o4v_A Phosphoribosylaminoimid 38.4 1.1E+02 0.0038 30.3 8.7 85 279-378 14-102 (183)
99 2h54_A Caspase-1; allosteric s 38.3 1.2E+02 0.0042 29.5 9.1 53 279-331 43-99 (178)
100 1dbq_A Purine repressor; trans 38.1 1.3E+02 0.0045 29.6 9.6 88 277-374 6-94 (289)
101 2d9w_A Docking protein 2; PH d 38.0 35 0.0012 32.0 4.8 46 173-237 64-116 (127)
102 3clk_A Transcription regulator 37.5 67 0.0023 32.0 7.4 87 277-374 7-95 (290)
103 3e3m_A Transcriptional regulat 36.9 1.3E+02 0.0044 31.2 9.7 87 276-373 68-155 (355)
104 3rg8_A Phosphoribosylaminoimid 36.9 1.1E+02 0.0038 29.7 8.3 82 280-375 4-89 (159)
105 2o20_A Catabolite control prot 36.3 1.1E+02 0.0038 31.2 9.1 87 276-373 61-148 (332)
106 1vhq_A Enhancing lycopene bios 35.8 89 0.003 31.1 7.9 104 277-386 5-151 (232)
107 1mkz_A Molybdenum cofactor bio 35.7 1.4E+02 0.0048 28.6 9.0 68 277-347 9-80 (172)
108 3l7n_A Putative uncharacterize 35.7 38 0.0013 34.0 5.2 57 279-348 1-57 (236)
109 1wg7_A Dedicator of cytokinesi 35.6 57 0.002 29.8 6.0 47 175-238 72-120 (150)
110 3lft_A Uncharacterized protein 35.1 74 0.0025 32.1 7.3 75 278-358 133-207 (295)
111 3h5o_A Transcriptional regulat 35.0 1.8E+02 0.006 29.8 10.3 87 276-373 60-147 (339)
112 3iv7_A Alcohol dehydrogenase I 34.6 18 0.0006 39.4 2.6 79 279-375 38-120 (364)
113 3tfm_A Myosin X; split PH doma 34.6 37 0.0013 34.1 4.8 59 163-239 85-152 (228)
114 1u11_A PURE (N5-carboxyaminoim 34.6 1.3E+02 0.0045 29.8 8.5 85 279-378 22-110 (182)
115 2iuf_A Catalase; oxidoreductas 34.5 11 0.00039 44.4 1.2 90 278-378 529-643 (688)
116 1pfk_A Phosphofructokinase; tr 34.4 46 0.0016 35.7 5.7 51 325-384 84-134 (320)
117 1xmp_A PURE, phosphoribosylami 34.3 1E+02 0.0035 30.3 7.6 85 279-378 12-100 (170)
118 1x1f_A Signal-transducing adap 34.2 69 0.0024 30.3 6.4 59 162-238 39-109 (149)
119 3rf7_A Iron-containing alcohol 34.1 93 0.0032 33.8 8.3 88 279-375 54-159 (375)
120 8abp_A L-arabinose-binding pro 33.6 1.7E+02 0.0059 29.0 9.7 86 279-374 3-89 (306)
121 2fvy_A D-galactose-binding per 33.5 1.8E+02 0.0061 28.9 9.9 68 300-375 22-92 (309)
122 3uug_A Multiple sugar-binding 33.5 1.4E+02 0.0048 30.1 9.2 88 278-375 3-92 (330)
123 1y5e_A Molybdenum cofactor bio 32.7 1.6E+02 0.0055 28.0 8.9 68 277-347 12-83 (169)
124 2qip_A Protein of unknown func 32.5 68 0.0023 30.5 6.1 56 301-359 65-131 (165)
125 1pyo_A Caspase-2; apoptosis, c 32.5 1.6E+02 0.0055 28.4 8.8 58 275-332 29-93 (167)
126 1zxx_A 6-phosphofructokinase; 32.0 46 0.0016 35.7 5.3 51 325-384 83-133 (319)
127 3oow_A Phosphoribosylaminoimid 32.0 1.6E+02 0.0055 28.8 8.6 84 280-378 7-94 (166)
128 3o1i_D Periplasmic protein TOR 31.9 95 0.0033 30.9 7.5 86 277-373 4-93 (304)
129 3aj4_A Pleckstrin homology dom 31.8 27 0.00091 30.2 2.9 21 218-238 87-107 (112)
130 2w2x_D 1-phosphatidylinositol- 31.8 63 0.0022 29.0 5.5 21 218-238 95-115 (124)
131 2vk2_A YTFQ, ABC transporter p 31.7 1.2E+02 0.0041 30.5 8.2 86 279-374 3-90 (306)
132 1mai_A Phospholipase C delta-1 31.5 69 0.0024 29.3 5.8 48 174-237 56-116 (131)
133 3snr_A Extracellular ligand-bi 31.2 1.2E+02 0.0042 30.7 8.3 78 277-359 134-213 (362)
134 3ej6_A Catalase-3; heme, hydro 31.0 38 0.0013 40.0 4.7 88 277-377 536-640 (688)
135 2rjo_A Twin-arginine transloca 30.8 1.2E+02 0.0041 30.9 8.2 88 277-374 4-95 (332)
136 3hcw_A Maltose operon transcri 30.7 53 0.0018 33.1 5.3 89 276-374 5-98 (295)
137 1ujn_A Dehydroquinate synthase 30.5 99 0.0034 33.1 7.6 85 278-375 28-118 (348)
138 2cof_A Protein KIAA1914; PH do 30.0 37 0.0013 29.3 3.5 22 217-238 76-97 (107)
139 4b4k_A N5-carboxyaminoimidazol 30.0 1.4E+02 0.0047 29.6 7.8 83 280-377 24-110 (181)
140 4h1h_A LMO1638 protein; MCCF-l 29.9 32 0.0011 36.7 3.6 71 278-350 11-93 (327)
141 3rcp_A Pleckstrin homology dom 29.8 36 0.0012 28.9 3.3 21 218-238 69-89 (103)
142 3miz_A Putative transcriptiona 29.7 1.6E+02 0.0055 29.4 8.8 71 276-348 11-82 (301)
143 2hig_A 6-phospho-1-fructokinas 29.6 74 0.0025 36.1 6.6 52 326-383 180-234 (487)
144 2ql9_A Caspase-7; cysteine pro 29.5 1.1E+02 0.0038 29.9 7.1 61 272-332 37-104 (173)
145 2qh8_A Uncharacterized protein 29.3 88 0.003 31.7 6.7 75 277-357 139-213 (302)
146 1f4p_A Flavodoxin; electron tr 29.1 62 0.0021 29.3 5.0 85 279-378 1-95 (147)
147 3trh_A Phosphoribosylaminoimid 29.1 1.3E+02 0.0045 29.4 7.4 84 279-377 7-94 (169)
148 4ehd_A Caspase-3; caspase, apo 29.0 1.1E+02 0.0037 32.0 7.4 113 271-383 36-170 (277)
149 2h31_A Multifunctional protein 28.6 2E+02 0.0067 32.1 9.7 83 278-375 265-352 (425)
150 3kkl_A Probable chaperone prot 28.1 1.7E+02 0.0059 29.6 8.7 40 336-378 98-142 (244)
151 2rlo_A Centaurin-gamma 1; spli 27.9 33 0.0011 30.8 2.8 21 218-238 100-120 (128)
152 3rot_A ABC sugar transporter, 27.8 1.3E+02 0.0044 30.1 7.6 67 300-374 23-93 (297)
153 2h3h_A Sugar ABC transporter, 27.6 1.9E+02 0.0063 29.2 8.9 67 300-374 20-89 (313)
154 3bbl_A Regulatory protein of L 27.3 1.2E+02 0.0041 30.2 7.3 87 277-373 3-93 (287)
155 2j32_A Caspase-3; Pro-caspase3 27.2 1.3E+02 0.0046 30.6 7.6 112 272-383 9-142 (250)
156 3ulb_A Target of rapamycin com 27.2 1.3E+02 0.0044 28.0 6.6 52 175-238 58-110 (121)
157 3iwt_A 178AA long hypothetical 27.1 96 0.0033 29.6 6.2 48 300-347 43-92 (178)
158 3opy_A 6-phosphofructo-1-kinas 26.9 95 0.0033 38.1 7.3 60 323-384 676-735 (989)
159 2d9v_A Pleckstrin homology dom 26.9 37 0.0012 30.7 3.0 22 218-239 90-111 (130)
160 3sir_A Caspase; hydrolase; 2.6 26.5 1.2E+02 0.0042 31.2 7.2 61 272-332 13-79 (259)
161 1qpz_A PURA, protein (purine n 26.4 2.7E+02 0.0092 28.4 10.0 89 276-374 56-145 (340)
162 1wjm_A Beta-spectrin III; PH d 26.3 39 0.0013 29.9 3.0 21 218-238 93-113 (123)
163 3hly_A Flavodoxin-like domain; 26.2 1.8E+02 0.006 27.1 7.8 84 279-375 1-90 (161)
164 3brs_A Periplasmic binding pro 26.1 1.1E+02 0.0038 30.1 6.7 88 277-374 4-97 (289)
165 1btn_A Beta-spectrin; signal t 26.0 41 0.0014 28.5 3.0 21 218-238 84-104 (106)
166 2ab0_A YAJL; DJ-1/THIJ superfa 26.0 92 0.0032 30.3 5.9 93 278-383 2-115 (205)
167 1jye_A Lactose operon represso 25.9 3.5E+02 0.012 27.8 10.8 66 277-345 60-127 (349)
168 2da0_A 130-kDa phosphatidylino 25.8 44 0.0015 29.2 3.3 21 218-238 77-97 (114)
169 1t35_A Hypothetical protein YV 25.8 86 0.0029 30.9 5.6 45 323-376 21-67 (191)
170 3cxb_B Pleckstrin homology dom 25.6 35 0.0012 30.1 2.5 21 218-238 77-97 (112)
171 3e4c_A Caspase-1; zymogen, inf 25.4 2.2E+02 0.0075 30.0 9.1 53 279-331 60-116 (302)
172 3sbx_A Putative uncharacterize 25.1 84 0.0029 31.1 5.4 45 324-376 33-78 (189)
173 2d9y_A Pleckstrin homology dom 25.0 43 0.0015 28.9 3.0 22 218-239 85-106 (117)
174 2coc_A FYVE, rhogef and PH dom 24.9 45 0.0015 30.0 3.1 21 218-238 82-102 (112)
175 1u9c_A APC35852; structural ge 24.8 1.4E+02 0.0048 29.1 7.1 74 302-383 34-137 (224)
176 2pjk_A 178AA long hypothetical 24.8 2.1E+02 0.0073 27.6 8.2 78 277-356 14-106 (178)
177 1u5d_A SKAP55, SRC kinase-asso 24.5 39 0.0013 28.5 2.5 21 218-238 81-101 (108)
178 4evq_A Putative ABC transporte 24.3 2.2E+02 0.0077 29.0 8.9 78 277-359 150-229 (375)
179 3g85_A Transcriptional regulat 23.8 86 0.003 31.1 5.4 89 276-374 9-98 (289)
180 2d9x_A Oxysterol binding prote 23.8 36 0.0012 30.0 2.3 21 218-238 80-100 (120)
181 2i5f_A Pleckstrin; PH domain, 23.6 46 0.0016 28.3 2.8 21 218-238 85-105 (109)
182 1unq_A RAC-alpha serine/threon 23.6 55 0.0019 28.8 3.5 22 217-238 85-106 (125)
183 2dhk_A TBC1 domain family memb 23.5 40 0.0014 29.8 2.5 22 218-239 80-101 (119)
184 2y7b_A Actin-binding protein a 23.3 58 0.002 28.9 3.6 23 216-238 102-124 (134)
185 3hcw_A Maltose operon transcri 23.2 2.1E+02 0.0071 28.6 8.2 91 278-376 131-228 (295)
186 3l3b_A ES1 family protein; ssg 23.2 2.3E+02 0.0078 28.7 8.5 41 278-319 23-64 (242)
187 3lkv_A Uncharacterized conserv 23.2 1.7E+02 0.0059 29.9 7.7 76 277-358 139-214 (302)
188 1btk_A Bruton'S tyrosine kinas 22.9 1.7E+02 0.0057 27.9 7.0 21 218-238 108-128 (169)
189 3huu_A Transcription regulator 22.9 1.4E+02 0.0049 29.9 6.9 90 276-375 20-114 (305)
190 3ksm_A ABC-type sugar transpor 22.8 2E+02 0.007 27.8 7.9 69 300-376 20-93 (276)
191 1u0t_A Inorganic polyphosphate 22.7 79 0.0027 33.2 5.0 96 674-789 183-284 (307)
192 1jmv_A USPA, universal stress 22.5 2E+02 0.007 25.0 7.1 69 300-376 67-139 (141)
193 1v5p_A Pleckstrin homology dom 22.5 50 0.0017 30.1 3.0 21 218-238 96-116 (126)
194 3r7f_A Aspartate carbamoyltran 22.5 2.2E+02 0.0076 30.2 8.4 85 283-384 66-164 (304)
195 2yry_A Pleckstrin homology dom 22.4 51 0.0017 28.7 3.0 21 218-238 96-116 (122)
196 4dzz_A Plasmid partitioning pr 22.3 2.5E+02 0.0086 26.2 8.2 74 279-358 1-74 (206)
197 2dkp_A Pleckstrin homology dom 22.2 44 0.0015 29.4 2.5 22 218-239 95-116 (128)
198 1byk_A Protein (trehalose oper 22.0 2.3E+02 0.0077 27.4 8.0 66 279-347 3-69 (255)
199 3lkb_A Probable branched-chain 22.0 3.2E+02 0.011 28.2 9.6 77 278-359 143-221 (392)
200 1ydh_A AT5G11950; structural g 22.0 98 0.0033 31.2 5.3 43 324-374 30-73 (216)
201 2dri_A D-ribose-binding protei 21.8 2.5E+02 0.0085 27.5 8.3 66 300-373 21-88 (271)
202 2iz6_A Molybdenum cofactor car 21.4 1.2E+02 0.0041 29.6 5.6 45 324-376 34-79 (176)
203 4a3s_A 6-phosphofructokinase; 21.4 90 0.0031 33.3 5.1 40 336-383 93-132 (319)
204 3d02_A Putative LACI-type tran 21.4 3.2E+02 0.011 27.0 9.1 85 279-373 5-92 (303)
205 3opy_B 6-phosphofructo-1-kinas 21.3 1.3E+02 0.0044 36.9 6.9 59 324-384 651-709 (941)
206 4eys_A MCCC family protein; MC 21.1 1.1E+02 0.0039 32.8 5.9 74 280-356 6-93 (346)
207 3cs3_A Sugar-binding transcrip 21.1 1.8E+02 0.0062 28.6 7.1 83 274-373 4-86 (277)
208 1fy2_A Aspartyl dipeptidase; s 20.9 1.9E+02 0.0065 28.9 7.2 68 277-357 30-98 (229)
209 3qua_A Putative uncharacterize 20.7 1.1E+02 0.0037 30.6 5.2 45 324-376 42-87 (199)
210 3td9_A Branched chain amino ac 20.4 1.3E+02 0.0046 30.8 6.2 77 279-359 150-227 (366)
211 3hbm_A UDP-sugar hydrolase; PS 20.4 1.1E+02 0.0036 31.9 5.4 27 337-375 226-252 (282)
212 1zl0_A Hypothetical protein PA 20.1 91 0.0031 33.1 4.8 69 278-350 16-95 (311)
No 1
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=100.00 E-value=1.9e-46 Score=401.42 Aligned_cols=290 Identities=24% Similarity=0.330 Sum_probs=231.3
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHH
Q 003783 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (795)
Q Consensus 276 ~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNG 355 (795)
..++|++||+||.||++++.+.+ +.+++.|++++++++++.|++++|+.++++++.. .+|.||++|||||||||+|+
T Consensus 6 ~~m~~~~vi~Np~sG~~~~~~~~-~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~--~~d~vv~~GGDGTl~~v~~~ 82 (304)
T 3s40_A 6 TKFEKVLLIVNPKAGQGDLHTNL-TKIVPPLAAAFPDLHILHTKEQGDATKYCQEFAS--KVDLIIVFGGDGTVFECTNG 82 (304)
T ss_dssp CSCSSEEEEECTTCSSSCHHHHH-HHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTT--TCSEEEEEECHHHHHHHHHH
T ss_pred CCCCEEEEEECcccCCCchHHHH-HHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhc--CCCEEEEEccchHHHHHHHH
Confidence 35789999999999999988888 5789999999999999999999999999999853 57999999999999999999
Q ss_pred HHcCCCcccCCCccEEEeecCCcchhhhhhcCC-CCHHHHHHHHHhCceeEEeEEEEEEeecceeEEEEEEEEEeeeccc
Q 003783 356 LLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGV-RDPVSAALAIVKGGLTATDVFAVEWIQTGVIHFGMTVSYYGFVSDV 434 (795)
Q Consensus 356 L~~r~d~~~a~~iPLGIIP~GTGNdfArsllGi-~dp~~Aa~~IlkG~~~~IDlg~V~~~~~g~~~ffln~~g~GfdAdV 434 (795)
|+.++ .++|||+||+||+|+||++ +|+ .++.+|+..|++|..+++|+++++ + +||++++++||+|+|
T Consensus 83 l~~~~-----~~~~l~iiP~Gt~N~~ar~-lg~~~~~~~a~~~i~~g~~~~iDlg~v~----~--~~F~~~~~~G~da~v 150 (304)
T 3s40_A 83 LAPLE-----IRPTLAIIPGGTCNDFSRT-LGVPQNIAEAAKLITKEHVKPVDVAKAN----G--QHFLNFWGIGLVSEV 150 (304)
T ss_dssp HTTCS-----SCCEEEEEECSSCCHHHHH-TTCCSSHHHHHHHHTTCCEEEEEEEEET----T--EEESSEEEEC-----
T ss_pred HhhCC-----CCCcEEEecCCcHHHHHHH-cCCCccHHHHHHHHHhCCeEEEEEEEEC----C--EEEEEEEeehHHHHH
Confidence 98752 2689999999999999998 554 699999999999999999999995 2 477899999999999
Q ss_pred hhhh-HHHHhhcCcHHHHHHHHHHHhcCCceEEEEEEecCCccccccccccccceeecCceeeeeeccCCCCCCcccCCC
Q 003783 435 LELS-EKYQKRFGPLRYFVAGFLKFLCLPKYSYEVEYLPASKEDLEGKQSAEREVVDMSDLYTDIMRKSKNEGMPRASSL 513 (795)
Q Consensus 435 ~~~s-ek~Rr~lG~lrY~laal~~L~~~r~y~~~I~~~p~~~~~~~g~~~~~~ek~e~~~~~v~V~Nr~~GgG~~iaP~A 513 (795)
+... ++.|+++|+++|++++++.|+++++++++|+++
T Consensus 151 ~~~~~~~~k~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d------------------------------------------ 188 (304)
T 3s40_A 151 SNNIDAEEKAKLGKIGYYLSTIRTVKNAETFPVKITYD------------------------------------------ 188 (304)
T ss_dssp -------------CHHHHTTTC------CCEEEEEEET------------------------------------------
T ss_pred HHhcCHHHhhcCCchHHHHHHHHHHhhcCCceEEEEEC------------------------------------------
Confidence 8754 455668999999999999999888888877651
Q ss_pred CCcCCCCCCCCCCCCCCCcccCCCCCCCCCcccccCCCcccccccCCCCCCCCCCcccCCCCCCCCCCCCCCCccccccc
Q 003783 514 SSIDSIMTPSRMSGGDPDTTCSSTHASTEPSEYVRGLDPKSKRLSSGRSNVMAEPEVIHPQLPLSTTPNWPRTRSKSRTD 593 (795)
Q Consensus 514 ~~~d~~~t~~~~~DG~Ldvv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~s~~r~~ 593 (795)
|
T Consensus 189 --------------g----------------------------------------------------------------- 189 (304)
T 3s40_A 189 --------------G----------------------------------------------------------------- 189 (304)
T ss_dssp --------------T-----------------------------------------------------------------
T ss_pred --------------C-----------------------------------------------------------------
Confidence 0
Q ss_pred ccccccccCCCCCcCCCCCcCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCcccCCCCCCCCC
Q 003783 594 KWTGLTVAHDPSRCSWGNTATNDKEDISSTLSDPGPIWDAEPKWDTEPNWDVENPIELPGPSDDVEAGTKKEGIPRYEEN 673 (795)
Q Consensus 594 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgp~~~l~~~~~~~~lp~~~~~ 673 (795)
T Consensus 190 -------------------------------------------------------------------------------- 189 (304)
T 3s40_A 190 -------------------------------------------------------------------------------- 189 (304)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEeccEEEEEEecccccccCCCCccCcCCCCCCCeEEEEEEcCcChHHHHHHHHHhccCCCCCCCceEEEEEEEEEEE
Q 003783 674 WIVKKGQYLGIMICNHACRTVQSAQVVAPRAEYDDNTMDMLLVHGSGRLRLARFFLLLQMGRHLSLPYVEYVKVKSVKIK 753 (795)
Q Consensus 674 W~~ieG~Fv~v~v~N~~~~~~~~d~~lAP~A~l~DG~LDLvlV~~~sR~~Ll~~l~~~~~G~hl~~P~V~~ikvka~rIe 753 (795)
+.++++++++.++|+++ .|..+.++|.|.++||.|||++++..+++.+..+|..+..|. ...|+|+++++++++|+
T Consensus 190 -~~~~~~~~~v~v~N~~~--~Ggg~~~~p~a~~~DG~Ldv~~v~~~~~~~l~~l~~~~~~g~-~~~~~v~~~~~~~v~i~ 265 (304)
T 3s40_A 190 -QVYEDEAVLVMVGNGEY--LGGIPSFIPNVKCDDGTLDIFVVKSTGIQAFKDYIGKKLFED-SNENDIFHVKAKSIHIE 265 (304)
T ss_dssp -EEEEEEEEEEEEECSSE--ETTEECSSTTCCTTSSCEEEEEEETTCHHHHHHHTTCCCSSC-CCTTTEEEEEESEEEEE
T ss_pred -EEEEeEEEEEEEECCCc--CCCCcccCCCCcCCCCEEEEEEEccCCHHHHHHHHHHHhcCC-CCCCcEEEEEccEEEEE
Confidence 11355788999999997 488899999999999999999999999887777666555665 78899999999999999
Q ss_pred ecCCCCCceeecCceeecCeeEEEeeecccccccc
Q 003783 754 AGKHTHNSCGIDGELFPLNGQVISSLLPEQCRLIG 788 (795)
Q Consensus 754 p~~~~~~~i~VDGE~ip~~~~V~~~vlP~~~rlig 788 (795)
+. .+..+++|||.+. ..+++++++|++++|+-
T Consensus 266 ~~--~~~~~~~DGE~~~-~~p~~i~v~p~al~v~~ 297 (304)
T 3s40_A 266 TE--EEKEVDTDGESSL-HTPCQIELLQGHFTMIY 297 (304)
T ss_dssp ES--SCCEEEEC--CCE-ESSEEEEEEEEEEEEEC
T ss_pred eC--CCcEEEeCCCCCC-CceEEEEEECCeEEEEe
Confidence 96 4678999999986 46899999999999984
No 2
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=100.00 E-value=1e-42 Score=376.97 Aligned_cols=291 Identities=24% Similarity=0.322 Sum_probs=245.3
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHH
Q 003783 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLL 357 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~ 357 (795)
+++++||+||.||++++.+.+ +.+++.|+++|+++.++.|+.++|+.++++++... .+|.||++||||||+||+|+|+
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~-~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~-~~d~vvv~GGDGTv~~v~~~l~ 101 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKREL-PDALIKLEKAGYETSAYATEKIGDATLEAERAMHE-NYDVLIAAGGDGTLNEVVNGIA 101 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHH-HHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTT-TCSEEEEEECHHHHHHHHHHHT
T ss_pred cceEEEEECCCCCCCchHHHH-HHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhc-CCCEEEEEcCchHHHHHHHHHH
Confidence 568999999999999987777 57899999999999999999999999999887543 4799999999999999999996
Q ss_pred cCCCcccCCCccEEEeecCCcchhhhhhcC-CCCHHHHHHHHHhCceeEEeEEEEEEeecceeEEEEEEEEEeeeccchh
Q 003783 358 SRGNQKEGISIPIGIIPAGSDNSLVWTVLG-VRDPVSAALAIVKGGLTATDVFAVEWIQTGVIHFGMTVSYYGFVSDVLE 436 (795)
Q Consensus 358 ~r~d~~~a~~iPLGIIP~GTGNdfArsllG-i~dp~~Aa~~IlkG~~~~IDlg~V~~~~~g~~~ffln~~g~GfdAdV~~ 436 (795)
... .++|||+||+||+|+||+. +| +.++..|+..|++|..+++|+++++ + +||++++++||+|+|+.
T Consensus 102 ~~~-----~~~pl~iIP~GT~N~lAr~-Lg~~~~~~~al~~i~~g~~~~iD~g~v~----~--r~fl~~~~~G~~a~v~~ 169 (337)
T 2qv7_A 102 EKP-----NRPKLGVIPMGTVNDFGRA-LHIPNDIMGALDVIIEGHSTKVDIGKMN----N--RYFINLAAGGQLTQVSY 169 (337)
T ss_dssp TCS-----SCCEEEEEECSSCCHHHHH-TTCCSSHHHHHHHHHHTCEEEEEEEEET----T--EEESSEEEEECBCC---
T ss_pred hCC-----CCCcEEEecCCcHhHHHHH-cCCCCCHHHHHHHHHcCCcEEEEEEEEC----C--EEEEEEeeecccHHHHH
Confidence 542 2689999999999999997 56 5789999999999999999999995 2 47789999999999987
Q ss_pred hhH-HHHhhcCcHHHHHHHHHHHhcCCceEEEEEEecCCccccccccccccceeecCceeeeeeccCCCCCCcccCCCCC
Q 003783 437 LSE-KYQKRFGPLRYFVAGFLKFLCLPKYSYEVEYLPASKEDLEGKQSAEREVVDMSDLYTDIMRKSKNEGMPRASSLSS 515 (795)
Q Consensus 437 ~se-k~Rr~lG~lrY~laal~~L~~~r~y~~~I~~~p~~~~~~~g~~~~~~ek~e~~~~~v~V~Nr~~GgG~~iaP~A~~ 515 (795)
..+ ..|+++|+++|++++++.++.++.++++|+++
T Consensus 170 ~~~~~~k~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d-------------------------------------------- 205 (337)
T 2qv7_A 170 ETPSKLKSIVGPFAYYIKGFEMLPQMKAVDLRIEYD-------------------------------------------- 205 (337)
T ss_dssp ----------CGGGSCCCTTTTGGGBCCEEEEEEET--------------------------------------------
T ss_pred HhhHHHHhccChHHHHHHHHHHHHhCCCccEEEEEC--------------------------------------------
Confidence 543 34567899999999999998888887777541
Q ss_pred cCCCCCCCCCCCCCCCcccCCCCCCCCCcccccCCCcccccccCCCCCCCCCCcccCCCCCCCCCCCCCCCccccccccc
Q 003783 516 IDSIMTPSRMSGGDPDTTCSSTHASTEPSEYVRGLDPKSKRLSSGRSNVMAEPEVIHPQLPLSTTPNWPRTRSKSRTDKW 595 (795)
Q Consensus 516 ~d~~~t~~~~~DG~Ldvv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~s~~r~~~~ 595 (795)
|
T Consensus 206 ------------g------------------------------------------------------------------- 206 (337)
T 2qv7_A 206 ------------G------------------------------------------------------------------- 206 (337)
T ss_dssp ------------T-------------------------------------------------------------------
T ss_pred ------------C-------------------------------------------------------------------
Confidence 0
Q ss_pred ccccccCCCCCcCCCCCcCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCcccCCCCCCCCCcE
Q 003783 596 TGLTVAHDPSRCSWGNTATNDKEDISSTLSDPGPIWDAEPKWDTEPNWDVENPIELPGPSDDVEAGTKKEGIPRYEENWI 675 (795)
Q Consensus 596 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgp~~~l~~~~~~~~lp~~~~~W~ 675 (795)
+
T Consensus 207 -------------------------------------------------------------------------------~ 207 (337)
T 2qv7_A 207 -------------------------------------------------------------------------------N 207 (337)
T ss_dssp -------------------------------------------------------------------------------E
T ss_pred -------------------------------------------------------------------------------E
Confidence 1
Q ss_pred EEeccEEEEEEecccccccCCCCccCcCCCCCCCeEEEEEEcCcChHHHHHHHHHhccCCCCCCCceEEEEEEEEEEEec
Q 003783 676 VKKGQYLGIMICNHACRTVQSAQVVAPRAEYDDNTMDMLLVHGSGRLRLARFFLLLQMGRHLSLPYVEYVKVKSVKIKAG 755 (795)
Q Consensus 676 ~ieG~Fv~v~v~N~~~~~~~~d~~lAP~A~l~DG~LDLvlV~~~sR~~Ll~~l~~~~~G~hl~~P~V~~ikvka~rIep~ 755 (795)
.+++++++|.++|.++ .+....++|.|.++||.||+++++..+++.+++++..+..|+|...|+|+++++++++|++.
T Consensus 208 ~~~~~~~~v~v~n~~~--~gGg~~i~P~a~~~DG~ldv~~v~~~~~~~l~~~~~~v~~g~~~~~~~v~~~~~~~i~i~~~ 285 (337)
T 2qv7_A 208 VFQGEALLFFLGLTNS--MAGFEKLVPDAKLDDGYFTLIIVEKSNLAELGHIMTLASRGEHTKHPKVIYEKAKAINISSF 285 (337)
T ss_dssp EEEEEEEEEEEESSCC--CSSCSCSSTTCCSSSSCEEEEEEECCCHHHHHHHHHHHTTTCGGGSTTEEEEEESEEEEECS
T ss_pred EEEeeEEEEEEECCCC--CCCCCccCCCCcCCCCeEEEEEEccCCHHHHHHHHHHHhcCCccCCCCEEEEEeeEEEEEEC
Confidence 1346788899999986 47888999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCCCceeecCceeecCeeEEEeeeccccccccc
Q 003783 756 KHTHNSCGIDGELFPLNGQVISSLLPEQCRLIGR 789 (795)
Q Consensus 756 ~~~~~~i~VDGE~ip~~~~V~~~vlP~~~rlig~ 789 (795)
.+..+++|||.+. ..++.+++.|+.++|+-.
T Consensus 286 --~~~~~~iDGE~~~-~~~i~i~v~p~~l~v~~p 316 (337)
T 2qv7_A 286 --TDLQLNVDGEYGG-KLPANFLNLERHIDVFAP 316 (337)
T ss_dssp --SCCEEEETTEEEE-ESCEEEEEEEEEEEEECC
T ss_pred --CCCeEEECCCcCC-CCcEEEEEEcCeEEEEec
Confidence 4577999999986 457999999999999853
No 3
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=100.00 E-value=1.4e-41 Score=367.91 Aligned_cols=287 Identities=22% Similarity=0.262 Sum_probs=234.4
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHH
Q 003783 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL 356 (795)
+++|++||+||.||++ +.+ +.+.+.|+++|+++.+..|++++++.++++++... .+|.||++||||||+||+|+|
T Consensus 28 ~~~~~~vi~Np~sg~~---~~~-~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~-~~d~vvv~GGDGTl~~v~~~l 102 (332)
T 2bon_A 28 EFPASLLILNGKSTDN---LPL-REAIMLLREEGMTIHVRVTWEKGDAARYVEEARKF-GVATVIAGGGDGTINEVSTAL 102 (332)
T ss_dssp --CCEEEEECSSSTTC---HHH-HHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHH-TCSEEEEEESHHHHHHHHHHH
T ss_pred hcceEEEEECCCCCCC---chH-HHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhc-CCCEEEEEccchHHHHHHHHH
Confidence 4688999999999987 445 46788999999999999999999999998876544 379999999999999999999
Q ss_pred HcCCCcccCCCccEEEeecCCcchhhhhhcC-CCCHHHHHHHHHhCceeEEeEEEEEEeecceeEEEEEEEEEeeeccch
Q 003783 357 LSRGNQKEGISIPIGIIPAGSDNSLVWTVLG-VRDPVSAALAIVKGGLTATDVFAVEWIQTGVIHFGMTVSYYGFVSDVL 435 (795)
Q Consensus 357 ~~r~d~~~a~~iPLGIIP~GTGNdfArsllG-i~dp~~Aa~~IlkG~~~~IDlg~V~~~~~g~~~ffln~~g~GfdAdV~ 435 (795)
+.++. ..++|||+||+||+|+||++ ++ +.++..++..|++|..+++|++.++ + +.+|++++++||+|+|+
T Consensus 103 ~~~~~---~~~~plgiiP~Gt~N~fa~~-l~i~~~~~~al~~i~~g~~~~iDlg~v~----~-r~~fl~~~~~G~da~v~ 173 (332)
T 2bon_A 103 IQCEG---DDIPALGILPLGTANDFATS-VGIPEALDKALKLAIAGDAIAIDMAQVN----K-QTCFINMATGGFGTRIT 173 (332)
T ss_dssp HHCCS---SCCCEEEEEECSSSCHHHHH-TTCCSSHHHHHHHHHHSEEEEEEEEEET----T-SCEESSEEEEEEEEEC-
T ss_pred hhccc---CCCCeEEEecCcCHHHHHHh-cCCCCCHHHHHHHHHcCCeEEeeEEEEC----C-ceEEEEEEeECccHHHH
Confidence 96521 13689999999999999998 56 5789999999999999999999995 2 23778999999999998
Q ss_pred hh-hHHHHhhcCcHHHHHHHHHHHhcCCceEEEEEEecCCccccccccccccceeecCceeeeeeccCCCCCCcccCCCC
Q 003783 436 EL-SEKYQKRFGPLRYFVAGFLKFLCLPKYSYEVEYLPASKEDLEGKQSAEREVVDMSDLYTDIMRKSKNEGMPRASSLS 514 (795)
Q Consensus 436 ~~-sek~Rr~lG~lrY~laal~~L~~~r~y~~~I~~~p~~~~~~~g~~~~~~ek~e~~~~~v~V~Nr~~GgG~~iaP~A~ 514 (795)
.. .++.|+++|+++|++++++.++.++.++++|+++
T Consensus 174 ~~~~~~~k~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d------------------------------------------- 210 (332)
T 2bon_A 174 TETPEKLKAALGSVSYIIHGLMRMDTLQPDRCEIRGE------------------------------------------- 210 (332)
T ss_dssp ---------CCHHHHHHHHHTSCEEEEECEEEEEEET-------------------------------------------
T ss_pred HHhhHHhHhcccHHHHHHHHHHHHhhCCCeeEEEEEC-------------------------------------------
Confidence 54 4666778999999999988877776666666441
Q ss_pred CcCCCCCCCCCCCCCCCcccCCCCCCCCCcccccCCCcccccccCCCCCCCCCCcccCCCCCCCCCCCCCCCcccccccc
Q 003783 515 SIDSIMTPSRMSGGDPDTTCSSTHASTEPSEYVRGLDPKSKRLSSGRSNVMAEPEVIHPQLPLSTTPNWPRTRSKSRTDK 594 (795)
Q Consensus 515 ~~d~~~t~~~~~DG~Ldvv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~s~~r~~~ 594 (795)
|
T Consensus 211 -------------g------------------------------------------------------------------ 211 (332)
T 2bon_A 211 -------------N------------------------------------------------------------------ 211 (332)
T ss_dssp -------------T------------------------------------------------------------------
T ss_pred -------------C------------------------------------------------------------------
Confidence 0
Q ss_pred cccccccCCCCCcCCCCCcCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCcccCCCCCCCCCc
Q 003783 595 WTGLTVAHDPSRCSWGNTATNDKEDISSTLSDPGPIWDAEPKWDTEPNWDVENPIELPGPSDDVEAGTKKEGIPRYEENW 674 (795)
Q Consensus 595 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgp~~~l~~~~~~~~lp~~~~~W 674 (795)
T Consensus 212 -------------------------------------------------------------------------------- 211 (332)
T 2bon_A 212 -------------------------------------------------------------------------------- 211 (332)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeccEEEEEEecccccccCCCCccCcCCCCCCCeEEEEEEcCcChHHHHHHHHHhccCCCCCCCceEEEEEEEEEEEe
Q 003783 675 IVKKGQYLGIMICNHACRTVQSAQVVAPRAEYDDNTMDMLLVHGSGRLRLARFFLLLQMGRHLSLPYVEYVKVKSVKIKA 754 (795)
Q Consensus 675 ~~ieG~Fv~v~v~N~~~~~~~~d~~lAP~A~l~DG~LDLvlV~~~sR~~Ll~~l~~~~~G~hl~~P~V~~ikvka~rIep 754 (795)
+.+++++++|.++|.++ .+....++|.|.++||.|||++|+.. ++ +++++..+..| |.. |.|.++++++++|++
T Consensus 212 ~~~~~~~~~v~v~N~~~--~ggg~~i~P~a~~~DG~Ldv~iv~~~-~~-~l~~~~~~~~g-~~~-~~v~~~~~~~i~I~~ 285 (332)
T 2bon_A 212 FHWQGDALVIGIGNGRQ--AGGGQQLCPNALINDGLLQLRIFTGD-EI-LPALVSTLKSD-EDN-PNIIEGASSWFDIQA 285 (332)
T ss_dssp EEEEEEESEEEEESSSC--BTTTBCSCTTCCTTSSCEEEEEECCS-SC-CHHHHHHHHTT-CCC-TTEEEEEESEEEEEE
T ss_pred EEEEEEEEEEEEECCCc--cCCCcccCCCCCCCCCeEEEEEECCH-HH-HHHHHHHHHcC-CCC-CcEEEEEeeEEEEEE
Confidence 11245777888899997 48889999999999999999999988 88 99999999999 887 999999999999998
Q ss_pred cCCCCCceeecCceeecCeeEEEeeecccccccc
Q 003783 755 GKHTHNSCGIDGELFPLNGQVISSLLPEQCRLIG 788 (795)
Q Consensus 755 ~~~~~~~i~VDGE~ip~~~~V~~~vlP~~~rlig 788 (795)
. .+..+++|||.+. ..++.++++|++++|+-
T Consensus 286 ~--~~~~~~iDGE~~~-~~~~~i~v~p~al~vl~ 316 (332)
T 2bon_A 286 P--HDITFNLDGEPLS-GQNFHIEILPAALRCRL 316 (332)
T ss_dssp E--EEEEEEETTEEEE-EEEEEEEEEEEEEEEEE
T ss_pred C--CCCeEEecCCCCC-CceEEEEEECCeeEEEe
Confidence 4 3467899999986 56788999898888774
No 4
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=99.05 E-value=7.2e-10 Score=117.40 Aligned_cols=111 Identities=17% Similarity=0.196 Sum_probs=75.4
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcch----HHHH-HHHhhhcCCCCCeEEEcCchHHHHH
Q 003783 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGH----AKNL-ASTVDISSCPDGIICVGGDGIINEV 352 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~gh----A~el-a~~l~~~~~~D~IVvvGGDGTlnEV 352 (795)
++|++||+||.++. +.+.+ +.+...|+++|+++.+..+..... ...+ .+.+. ..+|.||++|||||++++
T Consensus 5 mkki~ii~np~~~~--~~~~~-~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~D~vi~~GGDGT~l~a 79 (292)
T 2an1_A 5 FKCIGIVGHPRHPT--ALTTH-EMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIG--QQADLAVVVGGDGNMLGA 79 (292)
T ss_dssp CCEEEEECC---------CHH-HHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHH--HHCSEEEECSCHHHHHHH
T ss_pred CcEEEEEEcCCCHH--HHHHH-HHHHHHHHHCCCEEEEecchhhhcccccccccchhhcc--cCCCEEEEEcCcHHHHHH
Confidence 58899999998653 33445 467789999999887665431110 0000 01111 137999999999999999
Q ss_pred HHHHHcCCCcccCCCcc-EEEeecCCcchhhhhhcCCCCHHHHHHHHHhCce
Q 003783 353 LNGLLSRGNQKEGISIP-IGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGL 403 (795)
Q Consensus 353 vNGL~~r~d~~~a~~iP-LGIIP~GTGNdfArsllGi~dp~~Aa~~IlkG~~ 403 (795)
++++... ++| ||| |+||.|.||. +++.++.+++..|++|..
T Consensus 80 ~~~~~~~-------~~P~lGI-~~Gt~gfla~--~~~~~~~~al~~i~~g~~ 121 (292)
T 2an1_A 80 ARTLARY-------DINVIGI-NRGNLGFLTD--LDPDNALQQLSDVLEGRY 121 (292)
T ss_dssp HHHHTTS-------SCEEEEB-CSSSCCSSCC--BCTTSHHHHHHHHHTTCE
T ss_pred HHHhhcC-------CCCEEEE-ECCCcccCCc--CCHHHHHHHHHHHHcCCC
Confidence 9999765 355 666 8999877775 457889999999999986
No 5
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=98.95 E-value=1.4e-09 Score=116.54 Aligned_cols=116 Identities=14% Similarity=0.183 Sum_probs=77.8
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcch----------------HHHHHHHhhhcCCCCCe
Q 003783 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGH----------------AKNLASTVDISSCPDGI 340 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~gh----------------A~ela~~l~~~~~~D~I 340 (795)
.+++++||+||.++. +.+.+ +.+...|+++|+++.+..+..... +..+.+.......+|.|
T Consensus 3 ~m~ki~iI~n~~~~~--~~~~~-~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~v 79 (307)
T 1u0t_A 3 AHRSVLLVVHTGRDE--ATETA-RRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELV 79 (307)
T ss_dssp --CEEEEEESSSGGG--GSHHH-HHHHHHHHTTTCEEEEEC-----------------------------------CCCE
T ss_pred CCCEEEEEEeCCCHH--HHHHH-HHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEE
Confidence 368899999998864 33445 578889999999987776654321 12121110112347999
Q ss_pred EEEcCchHHHHHHHHHHcCCCcccCCCcc-EEEeecCCcchhhhhhcCCCCHHHHHHHHHhCceeE
Q 003783 341 ICVGGDGIINEVLNGLLSRGNQKEGISIP-IGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLTA 405 (795)
Q Consensus 341 VvvGGDGTlnEVvNGL~~r~d~~~a~~iP-LGIIP~GTGNdfArsllGi~dp~~Aa~~IlkG~~~~ 405 (795)
|++|||||++++++.+... ++| || |++||.|.|+. +.+.++.+++..+++|..+.
T Consensus 80 i~~GGDGT~l~a~~~~~~~-------~~pvlg-i~~G~~gfl~~--~~~~~~~~~~~~i~~g~~~~ 135 (307)
T 1u0t_A 80 LVLGGDGTFLRAAELARNA-------SIPVLG-VNLGRIGFLAE--AEAEAIDAVLEHVVAQDYRV 135 (307)
T ss_dssp EEEECHHHHHHHHHHHHHH-------TCCEEE-EECSSCCSSCS--EEGGGHHHHHHHHHHTCCEE
T ss_pred EEEeCCHHHHHHHHHhccC-------CCCEEE-EeCCCCccCcc--cCHHHHHHHHHHHHcCCcEE
Confidence 9999999999999999865 356 66 58999998884 35678889999999997643
No 6
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=98.84 E-value=7.8e-09 Score=108.17 Aligned_cols=98 Identities=14% Similarity=0.185 Sum_probs=69.7
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHc
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLS 358 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~ 358 (795)
+|++||+||.+|++ +.+.. +.+...|+ ++++ . +. + +. ....+|.||++|||||++++++++..
T Consensus 1 mki~ii~Np~~~~~-~~~~~-~~i~~~l~--~~~~--~-~~---~------~~-~~~~~D~vv~~GGDGTll~~a~~~~~ 63 (258)
T 1yt5_A 1 MKIAILYREEREKE-GEFLK-EKISKEHE--VIEF--G-EA---N------AP-GRVTADLIVVVGGDGTVLKAAKKAAD 63 (258)
T ss_dssp CEEEEEECGGGHHH-HHHHH-HHHTTTSE--EEEE--E-ES---S------SC-SCBCCSEEEEEECHHHHHHHHTTBCT
T ss_pred CEEEEEEeCCCchH-HHHHH-HHHHHHhc--CCce--e-cc---c------cc-ccCCCCEEEEEeCcHHHHHHHHHhCC
Confidence 47999999999986 65544 34444444 3332 2 21 2 11 12347999999999999999999865
Q ss_pred CCCcccCCCcc-EEEeecCCcchhhhhhcCCCCHHHHHHHHHhCcee
Q 003783 359 RGNQKEGISIP-IGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLT 404 (795)
Q Consensus 359 r~d~~~a~~iP-LGIIP~GTGNdfArsllGi~dp~~Aa~~IlkG~~~ 404 (795)
. +| ||| ++||.+.|+ . +.+.++.+++..+++|..+
T Consensus 64 -~-------~PilGI-n~G~~Gfl~-~-~~~~~~~~al~~i~~g~~~ 99 (258)
T 1yt5_A 64 -G-------TPMVGF-KAGRLGFLT-S-YTLDEIDRFLEDLRNWNFR 99 (258)
T ss_dssp -T-------CEEEEE-ESSSCCSSC-C-BCGGGHHHHHHHHHTTCCE
T ss_pred -C-------CCEEEE-ECCCCCccC-c-CCHHHHHHHHHHHHcCCce
Confidence 2 45 777 599996666 4 5678889999999999864
No 7
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=98.78 E-value=1.1e-08 Score=107.91 Aligned_cols=95 Identities=18% Similarity=0.186 Sum_probs=72.2
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHc
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLS 358 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~ 358 (795)
||+.||+||. .++.+.+ +.+...|+++|++++ ...+|.||++|||||+.++++.+..
T Consensus 1 mki~ii~n~~---~~~~~~~-~~l~~~l~~~g~~v~-------------------~~~~D~vv~lGGDGT~l~aa~~~~~ 57 (272)
T 2i2c_A 1 MKYMITSKGD---EKSDLLR-LNMIAGFGEYDMEYD-------------------DVEPEIVISIGGDGTFLSAFHQYEE 57 (272)
T ss_dssp CEEEEEECCS---HHHHHHH-HHHHHHHTTSSCEEC-------------------SSSCSEEEEEESHHHHHHHHHHTGG
T ss_pred CEEEEEECCC---HHHHHHH-HHHHHHHHHCCCEeC-------------------CCCCCEEEEEcCcHHHHHHHHHHhh
Confidence 5799999973 3444544 567788999998761 1247999999999999999999976
Q ss_pred CCCcccCCCcc-EEEeecCCcchhhhhhcCCCCHHHHHHHHHhCcee
Q 003783 359 RGNQKEGISIP-IGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLT 404 (795)
Q Consensus 359 r~d~~~a~~iP-LGIIP~GTGNdfArsllGi~dp~~Aa~~IlkG~~~ 404 (795)
.. .++| ||| |+|| |+|+.. +.+.++.+++..+++|..+
T Consensus 58 ~~-----~~~PilGI-n~G~-lgfl~~-~~~~~~~~~l~~l~~g~~~ 96 (272)
T 2i2c_A 58 RL-----DEIAFIGI-HTGH-LGFYAD-WRPAEADKLVKLLAKGEYQ 96 (272)
T ss_dssp GT-----TTCEEEEE-ESSS-CCSSCC-BCGGGHHHHHHHHHTTCCE
T ss_pred cC-----CCCCEEEE-eCCC-CCcCCc-CCHHHHHHHHHHHHcCCCE
Confidence 41 1467 665 9999 667765 5677888899999999764
No 8
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=97.90 E-value=1.7e-05 Score=87.89 Aligned_cols=115 Identities=12% Similarity=0.178 Sum_probs=74.0
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHh--------------------hhcC
Q 003783 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTV--------------------DISS 335 (795)
Q Consensus 276 ~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l--------------------~~~~ 335 (795)
..+++++||.||.. ..+.+.+ ..+...|.+++..++++..+.. +.++...+ ....
T Consensus 39 ~~~k~V~II~n~~~--~~~~~~~-~~l~~~L~~~~~gi~V~ve~~~--a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (388)
T 3afo_A 39 NPLQNVYITKKPWT--PSTREAM-VEFITHLHESYPEVNVIVQPDV--AEEISQDFKSPLENDPNRPHILYTGPEQDIVN 113 (388)
T ss_dssp SCCCEEEEEECTTC--HHHHHHH-HHHHHHHHHHCTTCEEECCHHH--HHHHHTTCCSCGGGCTTSCEEEEECCHHHHHH
T ss_pred CCCcEEEEEEeCCC--HHHHHHH-HHHHHHHHHhCCCeEEEEeCch--hhhhhhhccccccccccccccccccchhhccc
Confidence 35789999999874 3444545 4677788888323334433221 11221000 0011
Q ss_pred CCCCeEEEcCchHHHHHHHHHHcCCCcccCCCc-cEEEeecCCcchhhhhhcCCCCHHHHHHHHHhCcee
Q 003783 336 CPDGIICVGGDGIINEVLNGLLSRGNQKEGISI-PIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLT 404 (795)
Q Consensus 336 ~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~i-PLGIIP~GTGNdfArsllGi~dp~~Aa~~IlkG~~~ 404 (795)
.+|.||++|||||+..++..+... .+ |+-=|++||-+-|+. +.+.+...++..+++|...
T Consensus 114 ~~DlVIvlGGDGTlL~aa~~~~~~-------~vpPiLGIN~G~lGFLt~--~~~~~~~~al~~il~g~~~ 174 (388)
T 3afo_A 114 RTDLLVTLGGDGTILHGVSMFGNT-------QVPPVLAFALGTLGFLSP--FDFKEHKKVFQEVISSRAK 174 (388)
T ss_dssp HCSEEEEEESHHHHHHHHHTTTTS-------CCCCEEEEECSSCCSSCC--EEGGGHHHHHHHHHTTCCE
T ss_pred CCCEEEEEeCcHHHHHHHHHhccc-------CCCeEEEEECCCcccCCc--CChHHHHHHHHHHhcCCce
Confidence 369999999999999999988654 34 444459999866653 4456788899999999754
No 9
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=96.41 E-value=0.006 Score=64.72 Aligned_cols=94 Identities=21% Similarity=0.208 Sum_probs=64.9
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHH
Q 003783 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLL 357 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~ 357 (795)
.+|+.||.|+..- . +.+...|+++|+++.+.. .... .+ . ..|.||++|||||+-.++..+.
T Consensus 29 ~mki~iv~~~~~~-------~-~~l~~~L~~~g~~v~~~~-~~~~-------~~--~-~~DlvIvlGGDGT~L~aa~~~~ 89 (278)
T 1z0s_A 29 GMRAAVVYKTDGH-------V-KRIEEALKRLEVEVELFN-QPSE-------EL--E-NFDFIVSVGGDGTILRILQKLK 89 (278)
T ss_dssp -CEEEEEESSSTT-------H-HHHHHHHHHTTCEEEEES-SCCG-------GG--G-GSSEEEEEECHHHHHHHHTTCS
T ss_pred ceEEEEEeCCcHH-------H-HHHHHHHHHCCCEEEEcc-cccc-------cc--C-CCCEEEEECCCHHHHHHHHHhC
Confidence 4679999998654 2 457778999999875432 1111 11 1 3699999999999998886653
Q ss_pred cCCCcccCCCccEEEeecCCcchhhhhhcCCCCHHHHHHHHHh
Q 003783 358 SRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVK 400 (795)
Q Consensus 358 ~r~d~~~a~~iPLGIIP~GTGNdfArsllGi~dp~~Aa~~Ilk 400 (795)
. . +|+--|..|+-+-|+. ..+.+..+++..+++
T Consensus 90 ~-------~-~PilGIN~G~lGFLt~--~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 90 R-------C-PPIFGINTGRVGLLTH--ASPENFEVELKKAVE 122 (278)
T ss_dssp S-------C-CCEEEEECSSSCTTCC--BBTTBCHHHHHHHHH
T ss_pred C-------C-CcEEEECCCCCccccc--cCHHHHHHHHHHHHh
Confidence 2 2 7877788897666663 345667778887776
No 10
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=95.20 E-value=0.13 Score=56.45 Aligned_cols=115 Identities=25% Similarity=0.280 Sum_probs=70.2
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHH---------Hh--------hhcCCCC
Q 003783 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLAS---------TV--------DISSCPD 338 (795)
Q Consensus 276 ~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~---------~l--------~~~~~~D 338 (795)
+.+++++||--|..- .....+ ..+...|...|+.+-+.. .-..+ ..+.. .. +....+|
T Consensus 36 ~~~k~I~iv~K~~~~--~~~~~~-~~l~~~L~~~~~~V~ve~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 110 (365)
T 3pfn_A 36 KSPKSVLVIKKMRDA--SLLQPF-KELCTHLMEENMIVYVEK-KVLED-PAIASDESFGAVKKKFCTFREDYDDISNQID 110 (365)
T ss_dssp SCCCEEEEEECTTCG--GGHHHH-HHHHHHHHHTSCEEEEEH-HHHHS-HHHHHCSTTHHHHHHCEEECTTTCCCTTTCS
T ss_pred CCCCEEEEEecCCCH--HHHHHH-HHHHHHHHHCCCEEEEeh-HHhhh-hccccccccccccccccccccChhhcccCCC
Confidence 468899999887653 333444 456778888887664331 11111 00110 00 1113479
Q ss_pred CeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeecCCcchhhhhhcCCCCHHHHHHHHHhCcee
Q 003783 339 GIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLT 404 (795)
Q Consensus 339 ~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArsllGi~dp~~Aa~~IlkG~~~ 404 (795)
.||++|||||+-.++..+... .+|+-=|-.|+--=|+ . ....+..+++..+++|..+
T Consensus 111 lvI~lGGDGT~L~aa~~~~~~-------~~PvlGiN~G~LGFLt-~-~~~~~~~~~l~~vl~g~~~ 167 (365)
T 3pfn_A 111 FIICLGGDGTLLYASSLFQGS-------VPPVMAFHLGSLGFLT-P-FSFENFQSQVTQVIEGNAA 167 (365)
T ss_dssp EEEEESSTTHHHHHHHHCSSS-------CCCEEEEESSSCTTTC-C-EESTTHHHHHHHHHHSCCB
T ss_pred EEEEEcChHHHHHHHHHhccC-------CCCEEEEcCCCCccce-e-ecHHHHHHHHHHHHcCCCe
Confidence 999999999999998876443 4676555666422222 1 3346788899999999754
No 11
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=86.24 E-value=3.7 Score=44.59 Aligned_cols=97 Identities=13% Similarity=0.202 Sum_probs=59.0
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE-eC-C--cchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK-TT-S--AGHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~-T~-~--~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
+|++||..+.+-...+ .+ +.+...|+.+|+++.++. .+ . .....++++.+... ..|.||++|| |++-.++-
T Consensus 41 ~~~liVtd~~~~~~~g--~~-~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~-~~d~IIavGG-Gsv~D~AK 115 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNG--SL-DDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRND-SFDFVVGLGG-GSPMDFAK 115 (371)
T ss_dssp SEEEEEEESSGGGTSS--HH-HHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTS-CCSEEEEEES-HHHHHHHH
T ss_pred CEEEEEECchHHhhcc--HH-HHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhc-CCCEEEEeCC-hHHHHHHH
Confidence 7899999875532221 23 567888999999876653 11 1 22344455554333 4799999998 67777666
Q ss_pred HHHcCC-----C-ccc------CCCccEEEeec--CCcch
Q 003783 355 GLLSRG-----N-QKE------GISIPIGIIPA--GSDNS 380 (795)
Q Consensus 355 GL~~r~-----d-~~~------a~~iPLGIIP~--GTGNd 380 (795)
.+...- + |+- ...+|+..||. |||--
T Consensus 116 ~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagtgse 155 (371)
T 1o2d_A 116 AVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTTAGTGSE 155 (371)
T ss_dssp HHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECSSCCCGG
T ss_pred HHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeCCCchhhh
Confidence 654320 0 000 03689999996 55543
No 12
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=81.00 E-value=3.6 Score=45.31 Aligned_cols=92 Identities=16% Similarity=0.189 Sum_probs=55.1
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC--C--cchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT--S--AGHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~--~--~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
+|++||..+.+-... ..+ +.+...|+++|+++.++.-- . .....++++.+.. ..+|.||++|| |++-.++-
T Consensus 44 ~r~liVtd~~~~~~~--g~~-~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~-~~~D~IIavGG-GsviD~AK 118 (407)
T 1vlj_A 44 RKVLFLYGGGSIKKN--GVY-DQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKK-EKVEAVLGVGG-GSVVDSAK 118 (407)
T ss_dssp CEEEEEECSSHHHHS--SHH-HHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHH-TTCSEEEEEES-HHHHHHHH
T ss_pred CeEEEEECchHHhhc--cHH-HHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHh-cCCCEEEEeCC-hhHHHHHH
Confidence 689999874332111 123 57888999999988655321 1 1233444444433 34799999998 77777766
Q ss_pred HHHcCC-----Ccc-------cCCCccEEEeec
Q 003783 355 GLLSRG-----NQK-------EGISIPIGIIPA 375 (795)
Q Consensus 355 GL~~r~-----d~~-------~a~~iPLGIIP~ 375 (795)
.+...- -|+ ....+|+..||.
T Consensus 119 ~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPT 151 (407)
T 1vlj_A 119 AVAAGALYEGDIWDAFIGKYQIEKALPIFDVLT 151 (407)
T ss_dssp HHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEEC
T ss_pred HHHHHHhCCCCHHHHhcccccCCCCCCEEEEeC
Confidence 654310 000 013689999997
No 13
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=81.00 E-value=6.2 Score=43.57 Aligned_cols=89 Identities=12% Similarity=0.197 Sum_probs=57.6
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC------cchHHHHHHHhhhcC--CCCCeEEEcCchH
Q 003783 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS------AGHAKNLASTVDISS--CPDGIICVGGDGI 348 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~------~ghA~ela~~l~~~~--~~D~IVvvGGDGT 348 (795)
..+|++||.++... +.+.+.+...|+.+|+++.++.-.. .....++.+.+...+ ..|.||++|| |.
T Consensus 61 ~~~rvlIVtd~~v~-----~~~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGG-Gs 134 (390)
T 3okf_A 61 AKQKVVIVTNHTVA-----PLYAPAIISLLDHIGCQHALLELPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGG-GV 134 (390)
T ss_dssp TTCEEEEEEETTTH-----HHHHHHHHHHHHHHTCEEEEEEECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEES-HH
T ss_pred CCCEEEEEECCcHH-----HHHHHHHHHHHHHcCCeEEEEEECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECC-cH
Confidence 35789999998764 2244688889999999987654322 223344444443221 1278999988 88
Q ss_pred HHHHHHHHHcCCCcccCCCccEEEeec
Q 003783 349 INEVLNGLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 349 lnEVvNGL~~r~d~~~a~~iPLGIIP~ 375 (795)
+..++-.+...- ...+|+..||.
T Consensus 135 v~D~ak~~Aa~~----~rgip~I~IPT 157 (390)
T 3okf_A 135 IGDLVGFAAACY----QRGVDFIQIPT 157 (390)
T ss_dssp HHHHHHHHHHHB----TTCCEEEEEEC
T ss_pred HhhHHHHHHHHh----cCCCCEEEeCC
Confidence 888877664211 12689999996
No 14
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=80.57 E-value=4 Score=43.88 Aligned_cols=83 Identities=16% Similarity=0.252 Sum_probs=56.2
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE-eCCcc--hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHH
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK-TTSAG--HAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~-T~~~g--hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNG 355 (795)
+|++||..+..-+ .+.+.+...|+.+|+++.++. ...+. ...++ +.+ .+...|.||++|| |++-.++-.
T Consensus 35 ~~~livtd~~~~~-----~~~~~v~~~L~~~g~~~~~~~~~~~~~~~~v~~~-~~~-~~~~~d~IIavGG-Gsv~D~aK~ 106 (354)
T 3ce9_A 35 KRVSLYFGEGIYE-----LFGETIEKSIKSSNIEIEAVETVKNIDFDEIGTN-AFK-IPAEVDALIGIGG-GKAIDAVKY 106 (354)
T ss_dssp SEEEEEEETTHHH-----HHHHHHHHHHHTTTCEEEEEEEECCCBHHHHHHH-HTT-SCTTCCEEEEEES-HHHHHHHHH
T ss_pred CeEEEEECccHHH-----HHHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH-HHh-hhcCCCEEEEECC-hHHHHHHHH
Confidence 6899999876532 233678889999999887665 33322 22333 333 2334699999998 788887777
Q ss_pred HHcCCCcccCCCccEEEeec
Q 003783 356 LLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 356 L~~r~d~~~a~~iPLGIIP~ 375 (795)
+.-. ..+|+..||.
T Consensus 107 vA~~------~~~p~i~IPT 120 (354)
T 3ce9_A 107 MAFL------RKLPFISVPT 120 (354)
T ss_dssp HHHH------HTCCEEEEES
T ss_pred HHhh------cCCCEEEecC
Confidence 6532 2589999997
No 15
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=78.35 E-value=0.65 Score=49.03 Aligned_cols=32 Identities=6% Similarity=-0.069 Sum_probs=27.4
Q ss_pred eeeeeec-cCCCCCCcccCCCCCcCCCCCCCCCCCCCCCcccC
Q 003783 494 LYTDIMR-KSKNEGMPRASSLSSIDSIMTPSRMSGGDPDTTCS 535 (795)
Q Consensus 494 ~~v~V~N-r~~GgG~~iaP~A~~~d~~~t~~~~~DG~Ldvv~~ 535 (795)
.++.++| +|+|+|+.++|+|+ .+||.||+++.
T Consensus 197 ~~v~v~N~~~~Ggg~~~~p~a~----------~~DG~Ldv~~v 229 (304)
T 3s40_A 197 VLVMVGNGEYLGGIPSFIPNVK----------CDDGTLDIFVV 229 (304)
T ss_dssp EEEEEECSSEETTEECSSTTCC----------TTSSCEEEEEE
T ss_pred EEEEEECCCcCCCCcccCCCCc----------CCCCEEEEEEE
Confidence 4678999 99999999999998 47899997764
No 16
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=78.11 E-value=8.3 Score=41.94 Aligned_cols=96 Identities=16% Similarity=0.178 Sum_probs=57.2
Q ss_pred CeEEEEEcCCCCCCC-chhhHHHhHHHHHHHcCCeEEEEEe--CC--cchHHHHHHHhhhcCCCCCeEEEcCchHHHHHH
Q 003783 279 PKMLVILNPRSGRGR-SSKVFHDIVEPIFKLAGFKLEVVKT--TS--AGHAKNLASTVDISSCPDGIICVGGDGIINEVL 353 (795)
Q Consensus 279 krllVIvNP~SG~Gk-a~ki~~~~I~plL~~aGi~~~v~~T--~~--~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVv 353 (795)
+|++||..+...+.. + .+ +.+...|+.+|+++.++.- .. .....++++.+.. ..+|.||++|| |++-.+.
T Consensus 34 ~~~livtd~~~~~~~~g--~~-~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~d~IIavGG-Gsv~D~a 108 (387)
T 3bfj_A 34 KKALLVTDKGLRAIKDG--AV-DKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRR-EQCDIIVTVGG-GSPHDCG 108 (387)
T ss_dssp SEEEEECCTTTC--CCS--SH-HHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHH-TTCCEEEEEES-HHHHHHH
T ss_pred CEEEEEECcchhhccch--HH-HHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHh-cCCCEEEEeCC-cchhhHH
Confidence 789999987664321 1 23 5678899999998865531 11 1233444444433 34799999998 6777766
Q ss_pred HHHHcC---C--Ccc-------cCCCccEEEeec--CCcc
Q 003783 354 NGLLSR---G--NQK-------EGISIPIGIIPA--GSDN 379 (795)
Q Consensus 354 NGL~~r---~--d~~-------~a~~iPLGIIP~--GTGN 379 (795)
-.+... + -|+ ....+|+..||. |||-
T Consensus 109 K~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gtgS 148 (387)
T 3bfj_A 109 KGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNTTAGTAS 148 (387)
T ss_dssp HHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEECSTTCCG
T ss_pred HHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCCccc
Confidence 655421 0 010 013689999997 5543
No 17
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=76.69 E-value=5.8 Score=43.33 Aligned_cols=95 Identities=16% Similarity=0.220 Sum_probs=56.9
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe--CCc--chHHHHHHHhhhcCCCCCeEEEcCchHHHHHH
Q 003783 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT--TSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVL 353 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T--~~~--ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVv 353 (795)
.+|++||..+.-- ... +.+.+...|+++|+++.++.- ..+ ....++++.+... ..|.||.+|| |++..+.
T Consensus 31 ~~~~liVtd~~~~---~~g-~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~-~~D~IIavGG-Gsv~D~a 104 (383)
T 3ox4_A 31 FKNALIVSDAFMN---KSG-VVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDN-NSDFVISLGG-GSPHDCA 104 (383)
T ss_dssp CCEEEEEEEHHHH---HTT-HHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHH-TCSEEEEEES-HHHHHHH
T ss_pred CCEEEEEECCchh---hCc-hHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhc-CcCEEEEeCC-cHHHHHH
Confidence 4789999876321 111 335788899999998876532 111 2334444444333 4799999999 7777776
Q ss_pred HHHHc---CCC--cc-------cCCCccEEEeec--CCc
Q 003783 354 NGLLS---RGN--QK-------EGISIPIGIIPA--GSD 378 (795)
Q Consensus 354 NGL~~---r~d--~~-------~a~~iPLGIIP~--GTG 378 (795)
-.+.. .+. |+ ....+|+..||. |||
T Consensus 105 K~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtg 143 (383)
T 3ox4_A 105 KAIALVATNGGEVKDYEGIDKSKKPALPLMSINTTAGTA 143 (383)
T ss_dssp HHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEECSSSCC
T ss_pred HHHHHHHhCCCCHHHHhcccccccCCCCEEEEeCCCCch
Confidence 65432 110 00 012689999997 544
No 18
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=73.89 E-value=2.4 Score=45.95 Aligned_cols=84 Identities=18% Similarity=0.181 Sum_probs=54.8
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe--CCcc-hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHH
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT--TSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T--~~~g-hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNG 355 (795)
+|++||.++..-+ . +.+.+...|+.+|+++.+..- +... ...++++.+.. .+.|.||++|| |++..+.-.
T Consensus 32 ~~~livtd~~~~~----~-~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~-~~~d~IIavGG-Gsv~D~aK~ 104 (370)
T 1jq5_A 32 NKTVVIADEIVWK----I-AGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARK-AEAAIVIGVGG-GKTLDTAKA 104 (370)
T ss_dssp SEEEEEECHHHHH----H-THHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHH-TTCSEEEEEES-HHHHHHHHH
T ss_pred CeEEEEEChHHHH----H-HHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHh-cCCCEEEEeCC-hHHHHHHHH
Confidence 7899999875532 1 335788899999988743221 1111 23334444333 34699999998 788888777
Q ss_pred HHcCCCcccCCCccEEEeec
Q 003783 356 LLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 356 L~~r~d~~~a~~iPLGIIP~ 375 (795)
+.-. ..+|+..||.
T Consensus 105 iA~~------~~~p~i~IPT 118 (370)
T 1jq5_A 105 VADE------LDAYIVIVPT 118 (370)
T ss_dssp HHHH------HTCEEEEEES
T ss_pred HHHh------cCCCEEEecc
Confidence 6532 2589999997
No 19
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=73.28 E-value=3.3 Score=46.44 Aligned_cols=83 Identities=14% Similarity=0.168 Sum_probs=53.6
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE-eCC-cc-hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHH
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK-TTS-AG-HAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~-T~~-~g-hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNG 355 (795)
+|++||..+..-+ . +.+.+...|+.+|+++.+.. ... .. ...++++.+. + ..|.||++|| |.+-.+.-.
T Consensus 92 ~rvlIVtd~~~~~----~-~~~~v~~~L~~~gi~~~~~~~~ge~~~~~v~~~~~~~~-~-~~D~IIAvGG-GSviD~AK~ 163 (450)
T 1ta9_A 92 KSAVVLADQNVWN----I-CANKIVDSLSQNGMTVTKLVFGGEASLVELDKLRKQCP-D-DTQVIIGVGG-GKTMDSAKY 163 (450)
T ss_dssp SEEEEEEEHHHHH----H-THHHHHHHHHHTTCEEEEEEECSCCCHHHHHHHHTTSC-T-TCCEEEEEES-HHHHHHHHH
T ss_pred CEEEEEECccHHH----H-HHHHHHHHHHHCCCeEEEEeeCCCCCHHHHHHHHHHHh-h-CCCEEEEeCC-cHHHHHHHH
Confidence 4899999865532 1 33578889999999874222 221 11 2233333332 3 5799999998 788888777
Q ss_pred HHcCCCcccCCCccEEEeec
Q 003783 356 LLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 356 L~~r~d~~~a~~iPLGIIP~ 375 (795)
+.-. ..+|+..||.
T Consensus 164 iA~~------~giP~I~IPT 177 (450)
T 1ta9_A 164 IAHS------MNLPSIICPT 177 (450)
T ss_dssp HHHH------TTCCEEEEES
T ss_pred HHHh------cCCCEEEEeC
Confidence 6632 2689999997
No 20
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=69.65 E-value=27 Score=34.36 Aligned_cols=86 Identities=19% Similarity=0.213 Sum_probs=58.6
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC---CcchHHHHHHHhhhcCCCC-CeEEEcCchHHHHH
Q 003783 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT---SAGHAKNLASTVDISSCPD-GIICVGGDGIINEV 352 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~---~~ghA~ela~~l~~~~~~D-~IVvvGGDGTlnEV 352 (795)
...++.||. |......+. ++....|++.|++|++.+.. .++...++++++... +.+ .|+++||.|-|--|
T Consensus 11 ~~P~V~Iim----GS~SD~~v~-~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~-g~~ViIa~AG~aahLpgv 84 (173)
T 4grd_A 11 SAPLVGVLM----GSSSDWDVM-KHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARER-GLRAIIAGAGGAAHLPGM 84 (173)
T ss_dssp SSCSEEEEE----SSGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTT-TCSEEEEEEESSCCHHHH
T ss_pred CCCeEEEEe----CcHhHHHHH-HHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhc-CCeEEEEeccccccchhh
Confidence 445688887 444444555 46677999999999887753 234566777776543 355 46778999999999
Q ss_pred HHHHHcCCCcccCCCccEEEeecCC
Q 003783 353 LNGLLSRGNQKEGISIPIGIIPAGS 377 (795)
Q Consensus 353 vNGL~~r~d~~~a~~iPLGIIP~GT 377 (795)
+-++.. .|+--+|.-+
T Consensus 85 vA~~t~---------~PVIgVPv~~ 100 (173)
T 4grd_A 85 LAAKTT---------VPVLGVPVAS 100 (173)
T ss_dssp HHHHCC---------SCEEEEEECC
T ss_pred heecCC---------CCEEEEEcCC
Confidence 999853 4555556543
No 21
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=69.13 E-value=7 Score=42.81 Aligned_cols=94 Identities=13% Similarity=0.163 Sum_probs=58.4
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHc------CCeEEEEEe-C-----CcchHHHHHHHhhhcCC--C---CCe
Q 003783 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLA------GFKLEVVKT-T-----SAGHAKNLASTVDISSC--P---DGI 340 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~a------Gi~~~v~~T-~-----~~ghA~ela~~l~~~~~--~---D~I 340 (795)
.+|++||.++... +.+.+.+...|+.+ ++++..+.. . ......++.+.+.. .+ . |.|
T Consensus 36 ~~k~liVtd~~v~-----~~~~~~v~~~L~~~~~~~~~g~~~~~~~~~~gE~~k~~~~v~~~~~~~~~-~~~~~~r~d~i 109 (393)
T 1sg6_A 36 STTYVLVTDTNIG-----SIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLS-QNPPCGRDTVV 109 (393)
T ss_dssp CSEEEEEEEHHHH-----HHHHHHHHHHHHHHHHHSSSCCEEEEEEECSSGGGSSHHHHHHHHHHHHT-SSSCCCTTCEE
T ss_pred CCeEEEEECCcHH-----HHHHHHHHHHHHhhhccccCCceeEEEEeCCCCCCCCHHHHHHHHHHHHH-cCCCCCCCCEE
Confidence 4689999986432 22446788888887 777753322 2 12233444444432 23 4 889
Q ss_pred EEEcCchHHHHHHHHHHcCCCcccCCCccEEEeec--CCcchhh
Q 003783 341 ICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPA--GSDNSLV 382 (795)
Q Consensus 341 VvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~--GTGNdfA 382 (795)
|++|| |.+-.++-.+...- ...+|+..||. ||+.+-+
T Consensus 110 IalGG-Gsv~D~ak~~Aa~~----~rgip~i~IPTTlla~~das 148 (393)
T 1sg6_A 110 IALGG-GVIGDLTGFVASTY----MRGVRYVQVPTTLLAMVDSS 148 (393)
T ss_dssp EEEES-HHHHHHHHHHHHHG----GGCCEEEEEECSHHHHHTTT
T ss_pred EEECC-cHHHHHHHHHHHHh----cCCCCEEEECCchhhhhhcC
Confidence 99988 77777776665211 02689999998 7776653
No 22
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=68.76 E-value=6.8 Score=43.00 Aligned_cols=83 Identities=12% Similarity=0.128 Sum_probs=49.7
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc---chHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHH
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA---GHAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~---ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNG 355 (795)
+|++||..+..-+ . +.+.+...|++ |+++.+...... ....++++.+... ..|.||.+|| |++-.++-.
T Consensus 53 ~r~liVtd~~~~~----~-~~~~v~~~L~~-g~~~~~~~~~~~p~~~~v~~~~~~~~~~-~~d~IIavGG-Gs~~D~AK~ 124 (387)
T 3uhj_A 53 KRALVLIDRVLFD----A-LSERIGKSCGD-SLDIRFERFGGECCTSEIERVRKVAIEH-GSDILVGVGG-GKTADTAKI 124 (387)
T ss_dssp SEEEEEECTTTHH----H-HHHHC-------CCEEEEEECCSSCSHHHHHHHHHHHHHH-TCSEEEEESS-HHHHHHHHH
T ss_pred CEEEEEECchHHH----H-HHHHHHHHHHc-CCCeEEEEcCCCCCHHHHHHHHHHHhhc-CCCEEEEeCC-cHHHHHHHH
Confidence 7899999876642 2 33677888998 988732222211 2233333433322 3699999999 888888887
Q ss_pred HHcCCCcccCCCccEEEeec
Q 003783 356 LLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 356 L~~r~d~~~a~~iPLGIIP~ 375 (795)
+.-. ..+|+..||.
T Consensus 125 iA~~------~~~p~i~IPT 138 (387)
T 3uhj_A 125 VAID------TGARIVIAPT 138 (387)
T ss_dssp HHHH------TTCEEEECCS
T ss_pred HHHh------cCCCEEEecC
Confidence 7643 2689999997
No 23
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=66.95 E-value=2.4 Score=45.19 Aligned_cols=32 Identities=13% Similarity=0.068 Sum_probs=26.8
Q ss_pred eeeeeec-cCCCCCCcccCCCCCcCCCCCCCCCCCCCCCcccC
Q 003783 494 LYTDIMR-KSKNEGMPRASSLSSIDSIMTPSRMSGGDPDTTCS 535 (795)
Q Consensus 494 ~~v~V~N-r~~GgG~~iaP~A~~~d~~~t~~~~~DG~Ldvv~~ 535 (795)
.++.++| +|+|||+.++|.|+ ++||.||+++.
T Consensus 219 ~~v~v~N~~~~ggg~~i~P~a~----------~~DG~Ldv~iv 251 (332)
T 2bon_A 219 LVIGIGNGRQAGGGQQLCPNAL----------INDGLLQLRIF 251 (332)
T ss_dssp SEEEEESSSCBTTTBCSCTTCC----------TTSSCEEEEEE
T ss_pred EEEEEECCCccCCCcccCCCCC----------CCCCeEEEEEE
Confidence 3567889 99999999999988 47899997764
No 24
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=64.50 E-value=18 Score=31.57 Aligned_cols=58 Identities=19% Similarity=0.406 Sum_probs=40.3
Q ss_pred eeeecceeeeccc--------ccCCcceEEEEecCCcceEEEEEeecCCCCCccccccCCeeeEeEEEEecCCHHHHHHH
Q 003783 162 AKLTSKALVWGSH--------VLPLDDIVSVSYNNGLRHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTTEEAIQW 233 (795)
Q Consensus 162 ~~~~~~~~~~~~~--------~l~l~d~~~~~~~~~~~~~~i~~y~~~k~~~g~~~~~~~~r~~~~~~f~~~~~~~a~~W 233 (795)
..|+...|.|.+. .|+|.++..|.... ...|.|. . ..++|.|.+++.+++++|
T Consensus 30 fvL~~~~L~yy~~~~~~~~~g~i~l~~~~~v~~~~-~~~F~i~--~----------------~~r~~~l~a~s~~e~~~W 90 (115)
T 2cod_A 30 VKFDGLSISYYNNEKEMYSKGIIPLSAISTVRVQG-DNKFEVV--T----------------TQRTFVFRVEKEEERNDW 90 (115)
T ss_dssp EEECSSEEEEEESSCCSSCCCEEETTTEEEEEEET-TTEEEEE--E----------------SSCCEEEECSSHHHHHHH
T ss_pred EEEECCEEEEEcCCCCcccCCEEECCcceEEEeCC-CCEEEEE--e----------------CCcEEEEECCCHHHHHHH
Confidence 4455566666532 57888887766544 3457775 1 024589999999999999
Q ss_pred HHhhh
Q 003783 234 VGGFA 238 (795)
Q Consensus 234 ~~~~~ 238 (795)
+++|.
T Consensus 91 i~~l~ 95 (115)
T 2cod_A 91 ISILL 95 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99995
No 25
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=64.24 E-value=15 Score=40.13 Aligned_cols=86 Identities=14% Similarity=0.154 Sum_probs=55.6
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc------chHHHHHHHhhhc--CCCCCeEEEcCchHHH
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA------GHAKNLASTVDIS--SCPDGIICVGGDGIIN 350 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~------ghA~ela~~l~~~--~~~D~IVvvGGDGTln 350 (795)
+|++||.++.... .+ +.+...|+.+|+++.++.-... ....++.+.+... ...|.||++|| |.+.
T Consensus 44 ~rvlIVtd~~v~~-----~~-~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~r~d~IIavGG-Gsv~ 116 (368)
T 3qbe_A 44 HKVAVVHQPGLAE-----TA-EEIRKRLAGKGVDAHRIEIPDAEAGKDLPVVGFIWEVLGRIGIGRKDALVSLGG-GAAT 116 (368)
T ss_dssp SEEEEEECGGGHH-----HH-HHHHHHHHHTTCEEEEEECCSGGGGGBHHHHHHHHHHHHHHTCCTTCEEEEEES-HHHH
T ss_pred CEEEEEECccHHH-----HH-HHHHHHHHhcCCcceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-hHHH
Confidence 7899999986532 34 5788899999998876543222 2233444433211 12589999999 7887
Q ss_pred HHHHHHHcCCCcccCCCccEEEeec
Q 003783 351 EVLNGLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 351 EVvNGL~~r~d~~~a~~iPLGIIP~ 375 (795)
.++-.+...- ...+|+..||.
T Consensus 117 D~ak~~Aa~~----~rgip~i~IPT 137 (368)
T 3qbe_A 117 DVAGFAAATW----LRGVSIVHLPT 137 (368)
T ss_dssp HHHHHHHHHG----GGCCEEEEEEC
T ss_pred HHHHHHHHHh----ccCCcEEEECC
Confidence 8776665321 02589999996
No 26
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=62.83 E-value=9.4 Score=41.87 Aligned_cols=95 Identities=17% Similarity=0.182 Sum_probs=53.9
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC----cchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS----AGHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~----~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
+|++||..+.+-... ..+ +.+...|+ |+++.++.-.. .....++++.+... ++|.||++|| |++-.++-
T Consensus 51 ~r~liVtd~~~~~~~--g~~-~~v~~~L~--g~~~~~f~~v~~~p~~~~v~~~~~~~~~~-~~D~IIavGG-GsviD~AK 123 (408)
T 1oj7_A 51 ARVLITYGGGSVKKT--GVL-DQVLDALK--GMDVLEFGGIEPNPAYETLMNAVKLVREQ-KVTFLLAVGG-GSVLDGTK 123 (408)
T ss_dssp CEEEEEECSSHHHHH--SHH-HHHHHHTT--TSEEEEECCCCSSCBHHHHHHHHHHHHHH-TCCEEEEEES-HHHHHHHH
T ss_pred CEEEEEECCchhhhc--cHH-HHHHHHhC--CCEEEEeCCcCCCcCHHHHHHHHHHHHHc-CCCEEEEeCC-chHHHHHH
Confidence 789999875432111 123 56666776 88776553221 12333444444333 3699999999 77777766
Q ss_pred HHHcC---CC----c--------ccCCCccEEEeec--CCcch
Q 003783 355 GLLSR---GN----Q--------KEGISIPIGIIPA--GSDNS 380 (795)
Q Consensus 355 GL~~r---~d----~--------~~a~~iPLGIIP~--GTGNd 380 (795)
.+... +. | .....+|+..||. |||--
T Consensus 124 ~iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTagtgSe 166 (408)
T 1oj7_A 124 FIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSE 166 (408)
T ss_dssp HHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSCSSCGG
T ss_pred HHHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeCCCchhHH
Confidence 65432 10 0 0014689999997 55433
No 27
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=61.95 E-value=11 Score=33.20 Aligned_cols=59 Identities=17% Similarity=0.341 Sum_probs=39.2
Q ss_pred eeeecceeeecc--------cccCCcceEEEEecC------CcceEEEEEeecCCCCCccccccCCeeeEeEEEEecCCH
Q 003783 162 AKLTSKALVWGS--------HVLPLDDIVSVSYNN------GLRHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTT 227 (795)
Q Consensus 162 ~~~~~~~~~~~~--------~~l~l~d~~~~~~~~------~~~~~~i~~y~~~k~~~g~~~~~~~~r~~~~~~f~~~~~ 227 (795)
..|+...|.|.+ ..|.|.++..|.... ....|.|.. ..++|.|.+++.
T Consensus 35 fvL~~~~L~yy~~~~~~~~~g~i~l~~~~~v~~~~~~~~~~~~~~F~i~~------------------~~r~~~l~a~s~ 96 (125)
T 1eaz_A 35 FQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVT------------------TSRTFYVQADSP 96 (125)
T ss_dssp EEECSSEEEEESSTTCSSCSEEEEGGGCCEEEECTTHHHHTCSSEEEEEC------------------SSCEEEEECSSH
T ss_pred EEEeCCEEEEEcCCCCCcceeEEEcccceEEeeccccccCCcCCEEEEEe------------------CCcEEEEEcCCH
Confidence 345555666653 267788876665421 234466652 124699999999
Q ss_pred HHHHHHHHhhh
Q 003783 228 EEAIQWVGGFA 238 (795)
Q Consensus 228 ~~a~~W~~~~~ 238 (795)
+++++|+++|.
T Consensus 97 ~e~~~W~~al~ 107 (125)
T 1eaz_A 97 EEMHSWIKAVS 107 (125)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999995
No 28
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=61.40 E-value=8.4 Score=41.82 Aligned_cols=95 Identities=19% Similarity=0.203 Sum_probs=56.3
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC----cchHHHHHHHhhhcCCCCCeEEEcCchHHHHHH
Q 003783 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS----AGHAKNLASTVDISSCPDGIICVGGDGIINEVL 353 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~----~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVv 353 (795)
.+|++||..+...+. . +.+.+...|+.+|+++.++.--. .....++++.+... .+|.||++|| |++..++
T Consensus 31 ~~~~livtd~~~~~~---g-~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~-~~d~IIavGG-Gsv~D~a 104 (386)
T 1rrm_A 31 YQKALIVTDKTLVQC---G-VVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNS-GADYLIAIGG-GSPQDTC 104 (386)
T ss_dssp CCEEEEECBHHHHHT---T-HHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHH-TCSEEEEEES-HHHHHHH
T ss_pred CCEEEEEECcchhhc---h-HHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhc-CcCEEEEeCC-hHHHHHH
Confidence 368999987543211 1 23578889999999876553211 12334444444333 3699999999 7777766
Q ss_pred HHHHcC---CC----cc-------cCCCccEEEeec--CCc
Q 003783 354 NGLLSR---GN----QK-------EGISIPIGIIPA--GSD 378 (795)
Q Consensus 354 NGL~~r---~d----~~-------~a~~iPLGIIP~--GTG 378 (795)
-.+... +. |+ ....+|+..||. |||
T Consensus 105 K~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gtg 145 (386)
T 1rrm_A 105 KAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAGTA 145 (386)
T ss_dssp HHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSSSCC
T ss_pred HHHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeCCCCch
Confidence 554321 10 00 023689999997 554
No 29
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=61.03 E-value=18 Score=31.43 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=19.2
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003783 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
++|.|.+++.+++++|+++|.
T Consensus 87 r~~~l~a~s~~e~~~Wi~al~ 107 (117)
T 1v5u_A 87 RVYNFCAQDVPSAQQWVDRIQ 107 (117)
T ss_dssp CEEEEECSSHHHHHHHHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHH
Confidence 568999999999999999994
No 30
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=60.17 E-value=39 Score=36.55 Aligned_cols=87 Identities=14% Similarity=0.142 Sum_probs=53.6
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc------chHHHHHHHhhhcC--CCCCeEEEcCchHH
Q 003783 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA------GHAKNLASTVDISS--CPDGIICVGGDGII 349 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~------ghA~ela~~l~~~~--~~D~IVvvGGDGTl 349 (795)
.+|++||.++...+ .+.+.+...|+.+ +++.++.-... ....++.+.+...+ ..|.||++|| |.+
T Consensus 34 ~~k~liVtd~~v~~-----~~~~~v~~~L~~~-~~~~~~~~~~ge~~k~~~~v~~~~~~~~~~~~~r~d~iIalGG-Gsv 106 (368)
T 2gru_A 34 FDQYIMISDSGVPD-----SIVHYAAEYFGKL-APVHILRFQGGEEYKTLSTVTNLQERAIALGANRRTAIVAVGG-GLT 106 (368)
T ss_dssp CSEEEEEEETTSCH-----HHHHHHHHHHTTT-SCEEEEEECCSGGGCSHHHHHHHHHHHHHTTCCTTEEEEEEES-HHH
T ss_pred CCEEEEEECCcHHH-----HHHHHHHHHHHhc-cceeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEEECC-hHH
Confidence 47999999987642 2346788888777 66654332221 12333333332211 2589999998 888
Q ss_pred HHHHHHHHcCCCcccCCCccEEEeec
Q 003783 350 NEVLNGLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 350 nEVvNGL~~r~d~~~a~~iPLGIIP~ 375 (795)
..++-.+...- ...+|+..||.
T Consensus 107 ~D~ak~~Aa~~----~rgip~i~IPT 128 (368)
T 2gru_A 107 GNVAGVAAGMM----FRGIALIHVPT 128 (368)
T ss_dssp HHHHHHHHHHB----TTCCEEEEEEC
T ss_pred HHHHHHHHHHh----cCCCCEEEECC
Confidence 88877765321 02689999996
No 31
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=58.83 E-value=11 Score=40.73 Aligned_cols=82 Identities=15% Similarity=0.211 Sum_probs=51.8
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC--Cc--chHHHHHHHhhhcCCCCCeEEEcCchHHHHHH
Q 003783 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT--SA--GHAKNLASTVDISSCPDGIICVGGDGIINEVL 353 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~--~~--ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVv 353 (795)
.+|++||..+.. . ... +.+...|+..+ +.++.-- .+ ....++++.+.. ...|.||.+|| |++..+.
T Consensus 34 ~~r~liVtd~~~----~-~~~-~~v~~~L~~~~--~~v~~~v~~~p~~~~v~~~~~~~~~-~~~D~IIavGG-Gs~iD~a 103 (353)
T 3hl0_A 34 LSRALVLSTPQQ----K-GDA-EALASRLGRLA--AGVFSEAAMHTPVEVTKTAVEAYRA-AGADCVVSLGG-GSTTGLG 103 (353)
T ss_dssp CCCEEEECCGGG----H-HHH-HHHHHHHGGGE--EEEECCCCTTCBHHHHHHHHHHHHH-TTCSEEEEEES-HHHHHHH
T ss_pred CCEEEEEecCch----h-hHH-HHHHHHHhhCC--cEEecCcCCCCcHHHHHHHHHHHhc-cCCCEEEEeCC-cHHHHHH
Confidence 368999987642 1 233 56777887754 4333211 11 233444444433 34799999999 8888888
Q ss_pred HHHHcCCCcccCCCccEEEeec
Q 003783 354 NGLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 354 NGL~~r~d~~~a~~iPLGIIP~ 375 (795)
-.+... ..+|+..||.
T Consensus 104 K~iA~~------~~~p~i~IPT 119 (353)
T 3hl0_A 104 KAIALR------TDAAQIVIPT 119 (353)
T ss_dssp HHHHHH------HCCEEEEEEC
T ss_pred HHHHhc------cCCCEEEEeC
Confidence 877653 2589999996
No 32
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=55.54 E-value=42 Score=33.39 Aligned_cols=90 Identities=9% Similarity=0.038 Sum_probs=54.3
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCchHH-HHHH
Q 003783 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGII-NEVL 353 (795)
Q Consensus 276 ~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDGTl-nEVv 353 (795)
++.+++.||+...+. .-...++ ..++..+++.|+++.+..+.... ...+..+.+.. ..+|+||+.+.+... .+++
T Consensus 6 ~~~~~Ig~i~~~~~~-~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~~~~~~ 82 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKH-EFAQRLI-NAFKAEAKANKYEALVATSQNSRISEREQILEFVH-LKVDAIFITTLDDVYIGSAI 82 (293)
T ss_dssp ---CEEEEEESCSCS-HHHHHHH-HHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHH-TTCSEEEEECSCTTTTHHHH
T ss_pred CCCcEEEEEEecCCc-HHHHHHH-HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH-cCCCEEEEecCChHHHHHHH
Confidence 356777777754322 1122333 46777888999998887765432 22344555543 358999999887653 4677
Q ss_pred HHHHcCCCcccCCCccEEEeec
Q 003783 354 NGLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 354 NGL~~r~d~~~a~~iPLGIIP~ 375 (795)
..+... ++|+-++-.
T Consensus 83 ~~~~~~-------~iPvV~~~~ 97 (293)
T 3l6u_A 83 EEAKKA-------GIPVFAIDR 97 (293)
T ss_dssp HHHHHT-------TCCEEEESS
T ss_pred HHHHHc-------CCCEEEecC
Confidence 777654 578777643
No 33
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=55.34 E-value=12 Score=38.86 Aligned_cols=96 Identities=13% Similarity=0.139 Sum_probs=58.8
Q ss_pred cEEEeccEEEEEEeccc-cc-ccCCCCccCcCCCCCCCeEEEEEEcCcChHHHHHHHHHhccCCCCCCCceEEEEEEEEE
Q 003783 674 WIVKKGQYLGIMICNHA-CR-TVQSAQVVAPRAEYDDNTMDMLLVHGSGRLRLARFFLLLQMGRHLSLPYVEYVKVKSVK 751 (795)
Q Consensus 674 W~~ieG~Fv~v~v~N~~-~~-~~~~d~~lAP~A~l~DG~LDLvlV~~~sR~~Ll~~l~~~~~G~hl~~P~V~~ikvka~r 751 (795)
+..++++.++|...|.+ .| .......++|.+ |++++.......+ +++ |. .+.+.+.++
T Consensus 171 ~~~~~~dglivstptGSTay~~SaGG~iv~P~~-------~~~~l~pi~p~~l--------~~r----~i-v~~~~~~i~ 230 (292)
T 2an1_A 171 AFSQRSDGLIISTPTGSTAYSLSAGGPILTPSL-------DAITLVPMFPHTL--------SAR----PL-VINSSSTIR 230 (292)
T ss_dssp EEEEEESEEEEECTGGGGTHHHHTTCCEECTTC-------SEEEEEEESCSST--------TCC----CE-EEETTCCEE
T ss_pred EEEEEeCEEEECCCCchHHHHHhCCCCCCCCCC-------CeEEEEecCcCcC--------CCC----CE-EECCCCEEE
Confidence 55678899998777764 11 112334688877 7777754222111 122 43 355566778
Q ss_pred EEecC-CCCCceeecCcee-ec--CeeEEEeeeccccccccc
Q 003783 752 IKAGK-HTHNSCGIDGELF-PL--NGQVISSLLPEQCRLIGR 789 (795)
Q Consensus 752 Iep~~-~~~~~i~VDGE~i-p~--~~~V~~~vlP~~~rlig~ 789 (795)
|+... ..+..+.+|||.. ++ ..++.+++.|..++++-.
T Consensus 231 i~~~~~~~~~~~~~DG~~~~~~~~~~~v~i~~~~~~~~li~~ 272 (292)
T 2an1_A 231 LRFSHRRSDLEISCDSQIALPIQEGEDVLIRRCDYHLNLIHP 272 (292)
T ss_dssp EEECC---CEEEEETTSCCEEECTTCEEEEEEEEEEEEEEEE
T ss_pred EEEccCCCceEEEECCCeEEecCCCcEEEEEECCCEEEEEEe
Confidence 87541 1345579999976 22 347999999999998853
No 34
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=55.32 E-value=19 Score=38.97 Aligned_cols=82 Identities=17% Similarity=0.267 Sum_probs=51.7
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC----cchHHHHHHHhhhcCCCCCeEEEcCchHHHHHH
Q 003783 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS----AGHAKNLASTVDISSCPDGIICVGGDGIINEVL 353 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~----~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVv 353 (795)
.+|++||..+.. ...+ +.+...|+.++ +.++.-.. .....+.++.+... ..|.||.+|| |++..+.
T Consensus 36 ~~r~liVtd~~~-----~~~~-~~v~~~L~~~~--~~~f~~v~~~p~~~~v~~~~~~~~~~-~~D~IIavGG-GsviD~a 105 (358)
T 3jzd_A 36 AKRALVLCTPNQ-----QAEA-ERIADLLGPLS--AGVYAGAVMHVPIESARDATARAREA-GADCAVAVGG-GSTTGLG 105 (358)
T ss_dssp CSCEEEECCGGG-----HHHH-HHHHHHHGGGE--EEEECCCCTTCBHHHHHHHHHHHHHH-TCSEEEEEES-HHHHHHH
T ss_pred CCeEEEEeCCcH-----HHHH-HHHHHHhccCC--EEEecCCcCCCCHHHHHHHHHHhhcc-CCCEEEEeCC-cHHHHHH
Confidence 368999987642 2233 56777887764 43332111 12333444444333 4799999999 8988888
Q ss_pred HHHHcCCCcccCCCccEEEeec
Q 003783 354 NGLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 354 NGL~~r~d~~~a~~iPLGIIP~ 375 (795)
-.+... ..+|+..||.
T Consensus 106 K~iA~~------~~~p~i~IPT 121 (358)
T 3jzd_A 106 KAIALE------TGMPIVAIPT 121 (358)
T ss_dssp HHHHHH------HCCCEEEEEC
T ss_pred HHHHhc------cCCCEEEEeC
Confidence 877653 2589999997
No 35
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=55.16 E-value=5.8 Score=42.20 Aligned_cols=32 Identities=9% Similarity=-0.162 Sum_probs=26.6
Q ss_pred eeeeeec-cCCCCCCcccCCCCCcCCCCCCCCCCCCCCCcccC
Q 003783 494 LYTDIMR-KSKNEGMPRASSLSSIDSIMTPSRMSGGDPDTTCS 535 (795)
Q Consensus 494 ~~v~V~N-r~~GgG~~iaP~A~~~d~~~t~~~~~DG~Ldvv~~ 535 (795)
+++.++| +++|||+.++|.|+ ++||.||+++.
T Consensus 214 ~~v~v~n~~~~gGg~~i~P~a~----------~~DG~ldv~~v 246 (337)
T 2qv7_A 214 LLFFLGLTNSMAGFEKLVPDAK----------LDDGYFTLIIV 246 (337)
T ss_dssp EEEEEESSCCCSSCSCSSTTCC----------SSSSCEEEEEE
T ss_pred EEEEEECCCCCCCCCccCCCCc----------CCCCeEEEEEE
Confidence 3567889 99999999999988 47899997764
No 36
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=55.14 E-value=62 Score=33.43 Aligned_cols=90 Identities=11% Similarity=0.113 Sum_probs=52.4
Q ss_pred CeEEEEEcCCCCC-CCchhhHHHhHHHHHHHcCCeEEEEEeCCcch-HHHHHHHhhhc-CCCCCeEEEcCchHHHHHHHH
Q 003783 279 PKMLVILNPRSGR-GRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGH-AKNLASTVDIS-SCPDGIICVGGDGIINEVLNG 355 (795)
Q Consensus 279 krllVIvNP~SG~-Gka~ki~~~~I~plL~~aGi~~~v~~T~~~gh-A~ela~~l~~~-~~~D~IVvvGGDGTlnEVvNG 355 (795)
+++.||+ |.... .-...+ .+.++..+++.|+.+.+..+..... ..+.++.+... +.+|+||+++-+....+++..
T Consensus 4 ~~Ig~i~-p~~~~~~f~~~~-~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~~ 81 (350)
T 3h75_A 4 TSVVFLN-PGNSTETFWVSY-SQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQILRL 81 (350)
T ss_dssp CEEEEEE-CSCTTCHHHHHH-HHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHH
T ss_pred CEEEEEC-CCCCCChHHHHH-HHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHHHH
Confidence 4455554 54432 212233 3567778888899988876654322 12344554432 358999999744566677776
Q ss_pred HHcCCCcccCCCccEEEeecCC
Q 003783 356 LLSRGNQKEGISIPIGIIPAGS 377 (795)
Q Consensus 356 L~~r~d~~~a~~iPLGIIP~GT 377 (795)
+... .+|+-.+-...
T Consensus 82 ~~~~-------giPvV~~~~~~ 96 (350)
T 3h75_A 82 SQGS-------GIKLFIVNSPL 96 (350)
T ss_dssp HTTS-------CCEEEEEESCC
T ss_pred HHhC-------CCcEEEEcCCC
Confidence 6543 57877765443
No 37
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=54.25 E-value=49 Score=33.17 Aligned_cols=89 Identities=18% Similarity=0.191 Sum_probs=50.8
Q ss_pred cCCCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCchHHHHH
Q 003783 274 RCKSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGIINEV 352 (795)
Q Consensus 274 ~~~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDGTlnEV 352 (795)
+.++.+.+.||+.-. ...-...++ ..++..+++.|+.+.+..+.... ...++.+.+.. ..+|+||+++.+.+ .+.
T Consensus 12 ~~~~s~~Igvi~~~~-~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~-~~~ 87 (289)
T 2fep_A 12 SSKKTTTVGVIIPDI-SSIFYSELA-RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLG-KQVDGIVFMGGNIT-DEH 87 (289)
T ss_dssp ----CCEEEEEESCT-TSHHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECCSCCC-HHH
T ss_pred ccCCCCeEEEEeCCC-CCchHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHh-CCCCEEEEecCCCC-HHH
Confidence 345677888888432 211112233 45677888899988776654322 22344555543 35899999987654 455
Q ss_pred HHHHHcCCCcccCCCccEEEe
Q 003783 353 LNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 353 vNGL~~r~d~~~a~~iPLGII 373 (795)
+..|... ++|+-.+
T Consensus 88 ~~~l~~~-------~iPvV~~ 101 (289)
T 2fep_A 88 VAEFKRS-------PVPIVLA 101 (289)
T ss_dssp HHHHHHS-------SSCEEEE
T ss_pred HHHHHhc-------CCCEEEE
Confidence 6666443 5777666
No 38
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.94 E-value=21 Score=30.87 Aligned_cols=21 Identities=19% Similarity=0.495 Sum_probs=19.0
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003783 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
++|.|.+++.+++++|+++|.
T Consensus 79 r~~~l~a~s~~e~~~Wi~ai~ 99 (115)
T 2dn6_A 79 KTFEISASDKKKKQEWIQAIH 99 (115)
T ss_dssp CEEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHH
Confidence 458999999999999999995
No 39
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=53.79 E-value=9.8 Score=39.16 Aligned_cols=94 Identities=12% Similarity=0.048 Sum_probs=57.8
Q ss_pred CcEEEeccEEEEEEeccc-cccc-CCCCccCcCCCCCCCeEEEEEEcCcChHHHHHHHHHhccCCCCCCCceEEEEEEEE
Q 003783 673 NWIVKKGQYLGIMICNHA-CRTV-QSAQVVAPRAEYDDNTMDMLLVHGSGRLRLARFFLLLQMGRHLSLPYVEYVKVKSV 750 (795)
Q Consensus 673 ~W~~ieG~Fv~v~v~N~~-~~~~-~~d~~lAP~A~l~DG~LDLvlV~~~sR~~Ll~~l~~~~~G~hl~~P~V~~ikvka~ 750 (795)
.+....++.++|...+.+ +|.. +....+.|.+. ++++.......+ ...|.| +.+.+.+
T Consensus 142 ~~~~~~~dGlivsTptGSTaY~~SaGGpiv~P~~~-------~~~i~pi~p~~l------------~~rp~v-~~~~~~i 201 (258)
T 1yt5_A 142 SSMWFFADGVVISTPTGSTAYSLSIGGPIIFPECE-------VLEISPIAPQFF------------LTRSVV-IPSNFKV 201 (258)
T ss_dssp CCEEEEESEEEEECTGGGGTTTTTTTCCCCCTTCC-------EEEEEEESCSTT------------CCCCEE-EETTSCE
T ss_pred EEEEEEccEEEEEcCCCcHHHHhhCCCcccCCCCC-------EEEEEEeccccc------------cCCCEE-ECCCCEE
Confidence 456778899888766554 2211 23457888875 444443321111 123544 4556677
Q ss_pred EEEecCCCCCceeecCceeecCeeEEEeeecccccccc
Q 003783 751 KIKAGKHTHNSCGIDGELFPLNGQVISSLLPEQCRLIG 788 (795)
Q Consensus 751 rIep~~~~~~~i~VDGE~ip~~~~V~~~vlP~~~rlig 788 (795)
+|+.. .+..+++|||....-.+|.+++.|..++++-
T Consensus 202 ~i~~~--~~~~~~~DG~~~~~~~~i~i~~~~~~~~li~ 237 (258)
T 1yt5_A 202 VVESQ--RDINMLVDGVLTGKTKRIEVKKSRRYVRILR 237 (258)
T ss_dssp EEEEE--EEEEEEETTEEEEEEEEEEEEEEEEEEEEEE
T ss_pred EEEEC--CCEEEEECCCcceeeEEEEEEECCCeEEEEE
Confidence 77763 3456899999874223599999999999875
No 40
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=53.76 E-value=66 Score=31.82 Aligned_cols=86 Identities=16% Similarity=0.217 Sum_probs=54.6
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcch-HHHHHHHhhhcCCCCCeEEEcCchHHHHHHHH
Q 003783 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGH-AKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~gh-A~ela~~l~~~~~~D~IVvvGGDGTlnEVvNG 355 (795)
+.+.+.||+.-. ...-...++ ..++..+++.|+.+.+..+..... ..++.+.+.. ..+|+||+++.+. .+.+..
T Consensus 6 ~s~~Igvi~~~~-~~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~--~~~~~~ 80 (276)
T 3jy6_A 6 SSKLIAVIVANI-DDYFSTELF-KGISSILESRGYIGVLFDANADIEREKTLLRAIGS-RGFDGLILQSFSN--PQTVQE 80 (276)
T ss_dssp CCCEEEEEESCT-TSHHHHHHH-HHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHT-TTCSEEEEESSCC--HHHHHH
T ss_pred CCcEEEEEeCCC-CchHHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh-CCCCEEEEecCCc--HHHHHH
Confidence 556777777433 222222333 467778888999988877664322 2344555543 4589999999988 777777
Q ss_pred HHcCCCcccCCCccEEEee
Q 003783 356 LLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 356 L~~r~d~~~a~~iPLGIIP 374 (795)
|... .+|+-++-
T Consensus 81 l~~~-------~iPvV~i~ 92 (276)
T 3jy6_A 81 ILHQ-------QMPVVSVD 92 (276)
T ss_dssp HHTT-------SSCEEEES
T ss_pred HHHC-------CCCEEEEe
Confidence 7654 57876663
No 41
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=53.72 E-value=32 Score=29.58 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=32.0
Q ss_pred ccCCcceEEEEecCC---cceEEEEEeecCCCCCccccccCCeeeEeEEEEecCCHHHHHHHHHhhh
Q 003783 175 VLPLDDIVSVSYNNG---LRHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 175 ~l~l~d~~~~~~~~~---~~~~~i~~y~~~k~~~g~~~~~~~~r~~~~~~f~~~~~~~a~~W~~~~~ 238 (795)
.|+|.++..+..... ...|.|.. ...++|.|.+++.+++.+|+++|.
T Consensus 50 ~i~L~~~~~~~~~~~~~~~~~F~i~~-----------------~~~~~~~~~a~s~~e~~~Wi~al~ 99 (109)
T 1wgq_A 50 SQPLLGFTVTLVKDENSESKVFQLLH-----------------KGMVFYVFKADDAHSTQRWIDAFQ 99 (109)
T ss_dssp EEECSSEEEEECCCSSCSSSEEEEEE-----------------TTEEEEEEECSSHHHHHHHHHHHH
T ss_pred eEECCCCEEEECCCCCCCCcEEEEEe-----------------CCCeEEEEECCCHHHHHHHHHHHH
Confidence 567777766554432 13455541 113579999999999999999995
No 42
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=53.39 E-value=34 Score=30.17 Aligned_cols=59 Identities=20% Similarity=0.335 Sum_probs=39.3
Q ss_pred eeeecceeeecc--------cccCCcceEEEEecC--C-cceEEEEEeecCCCCCccccccCCeeeEeEEEEecCCHHHH
Q 003783 162 AKLTSKALVWGS--------HVLPLDDIVSVSYNN--G-LRHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTTEEA 230 (795)
Q Consensus 162 ~~~~~~~~~~~~--------~~l~l~d~~~~~~~~--~-~~~~~i~~y~~~k~~~g~~~~~~~~r~~~~~~f~~~~~~~a 230 (795)
..|+...|.|.+ ..|.|.++..|.... + ...|.|.. + .++|.|.+++.+++
T Consensus 39 fvL~~~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~~~~~~~F~i~~-~-----------------~r~~~l~a~s~~e~ 100 (126)
T 1fao_A 39 FTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNCFCLVF-P-----------------FRTFYLCAKTGVEA 100 (126)
T ss_dssp EEEETTEEEEESSTTCSSCSEEEEGGGCCEEEEECSSSSSSEEEEEE-T-----------------TEEEEEECSSHHHH
T ss_pred EEEECCEEEEeCCCCCCCceeEEEccceEEEEecccCCCCCEEEEEe-C-----------------CcEEEEECCCHHHH
Confidence 345555566653 257788876655432 2 23577763 1 14699999999999
Q ss_pred HHHHHhhh
Q 003783 231 IQWVGGFA 238 (795)
Q Consensus 231 ~~W~~~~~ 238 (795)
++|+.+|.
T Consensus 101 ~~Wi~al~ 108 (126)
T 1fao_A 101 DEWIKILR 108 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999995
No 43
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=52.43 E-value=11 Score=31.81 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=19.0
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003783 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
++|.|.++|.+++++|+++|.
T Consensus 70 r~~~l~A~s~~e~~~Wi~aLq 90 (94)
T 2rsg_A 70 SVWYLRAQDPDHRQQWIDAIE 90 (94)
T ss_dssp EEEEEECCSSCCTHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHH
Confidence 468999999999999999985
No 44
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=52.25 E-value=25 Score=32.06 Aligned_cols=88 Identities=11% Similarity=0.237 Sum_probs=50.8
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEc---Cc--hHHHHHH
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVG---GD--GIINEVL 353 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvG---GD--GTlnEVv 353 (795)
++++||+=-..| ...++. +.|...|...|++++++....... ..+ ...+|.||++. |+ |.+...+
T Consensus 2 ~ki~I~y~S~tG--nT~~~A-~~ia~~l~~~g~~v~~~~~~~~~~-----~~l--~~~~d~ii~g~pty~~~~G~~p~~~ 71 (148)
T 3f6r_A 2 SKVLIVFGSSTG--NTESIA-QKLEELIAAGGHEVTLLNAADASA-----ENL--ADGYDAVLFGCSAWGMEDLEMQDDF 71 (148)
T ss_dssp CEEEEEEECSSS--HHHHHH-HHHHHHHHTTTCEEEEEETTTBCC-----TTT--TTTCSEEEEEECEECSSSCEECHHH
T ss_pred CeEEEEEECCCc--hHHHHH-HHHHHHHHhCCCeEEEEehhhCCH-----hHh--cccCCEEEEEecccCCCCCCCcHHH
Confidence 678888865544 455555 577778888898888776543211 112 10368777665 45 6666555
Q ss_pred HHHHcCCCcccCCCccEEEeecC
Q 003783 354 NGLLSRGNQKEGISIPIGIIPAG 376 (795)
Q Consensus 354 NGL~~r~d~~~a~~iPLGIIP~G 376 (795)
..++.+-........+++++-+|
T Consensus 72 ~~fl~~l~~~~l~~k~~~vfg~G 94 (148)
T 3f6r_A 72 LSLFEEFDRIGLAGRKVAAFASG 94 (148)
T ss_dssp HHHHTTGGGTCCTTCEEEEEEEE
T ss_pred HHHHHHhhccCCCCCEEEEEEeC
Confidence 55554311111235677887544
No 45
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=51.95 E-value=34 Score=34.24 Aligned_cols=89 Identities=17% Similarity=0.170 Sum_probs=53.8
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003783 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 276 ~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
++.+++.||+.-.. ..-...++ ..++..+++.|+.+.++.+.... ...++.+.+.. ..+|+||+.+.+. ..+.+.
T Consensus 6 ~~~~~Igvv~~~~~-~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~-~~~~~~ 81 (291)
T 3egc_A 6 KRSNVVGLIVSDIE-NVFFAEVA-SGVESEARHKGYSVLLANTAEDIVREREAVGQFFE-RRVDGLILAPSEG-EHDYLR 81 (291)
T ss_dssp -CCCEEEEEESCTT-SHHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECCCSS-CCHHHH
T ss_pred CCCcEEEEEECCCc-chHHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH-CCCCEEEEeCCCC-ChHHHH
Confidence 45677888774322 21122333 46777888999998887765432 23345555543 3589999999887 445555
Q ss_pred HHHcCCCcccCCCccEEEeec
Q 003783 355 GLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 355 GL~~r~d~~~a~~iPLGIIP~ 375 (795)
.|... .+|+-++-.
T Consensus 82 ~~~~~-------~iPvV~~~~ 95 (291)
T 3egc_A 82 TELPK-------TFPIVAVNR 95 (291)
T ss_dssp HSSCT-------TSCEEEESS
T ss_pred Hhhcc-------CCCEEEEec
Confidence 54332 578776644
No 46
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=51.21 E-value=71 Score=31.84 Aligned_cols=86 Identities=14% Similarity=0.171 Sum_probs=49.7
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003783 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 276 ~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
++.+++.||+. .....-...++ +.++..+++.|+.+.+..+.... ...++.+.+.. ..+|+||+++.+.+ .+.+.
T Consensus 6 ~~~~~Igvi~~-~~~~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~-~~~~~ 81 (285)
T 3c3k_A 6 AKTGMLLVMVS-NIANPFCAAVV-KGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSG-KMVDGVITMDALSE-LPELQ 81 (285)
T ss_dssp -CCCEEEEEES-CTTSHHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHT-TCCSEEEECCCGGG-HHHHH
T ss_pred CCCCEEEEEeC-CCCCchHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHh-CCCCEEEEeCCCCC-hHHHH
Confidence 35567777774 32221112223 45677888899988776654322 22344455533 45899999988754 35555
Q ss_pred HHHcCCCcccCCCccEEEe
Q 003783 355 GLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 355 GL~~r~d~~~a~~iPLGII 373 (795)
.|. . ++|+-.+
T Consensus 82 ~l~-~-------~iPvV~~ 92 (285)
T 3c3k_A 82 NII-G-------AFPWVQC 92 (285)
T ss_dssp HHH-T-------TSSEEEE
T ss_pred HHh-c-------CCCEEEE
Confidence 554 3 4777665
No 47
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=50.96 E-value=5.4 Score=43.31 Aligned_cols=84 Identities=14% Similarity=0.311 Sum_probs=50.4
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHH
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLNGLL 357 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~ 357 (795)
+|++||..+..-+. .+.+.+...|+.+|+.+.++.-+... ...++++.+. + ..|.||++|| |++-.++-.+.
T Consensus 42 ~~~liVtd~~~~~~----~~~~~v~~~L~~~g~~~~~~~ge~~~~~v~~~~~~~~-~-~~d~IIavGG-Gsv~D~aK~iA 114 (376)
T 1kq3_A 42 ERAFVVIDDFVDKN----VLGENFFSSFTKVRVNKQIFGGECSDEEIERLSGLVE-E-ETDVVVGIGG-GKTLDTAKAVA 114 (376)
T ss_dssp SEEEEEECHHHHHH----TTCTTGGGGCSSSEEEEEECCSSCBHHHHHHHHTTCC-T-TCCEEEEEES-HHHHHHHHHHH
T ss_pred CeEEEEECccHHhh----ccHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHHh-c-CCCEEEEeCC-cHHHHHHHHHH
Confidence 78999997643211 10134555676677555444222222 2233333332 3 4699999998 78888887776
Q ss_pred cCCCcccCCCccEEEeec
Q 003783 358 SRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 358 ~r~d~~~a~~iPLGIIP~ 375 (795)
-. ..+|+..||.
T Consensus 115 ~~------~~~p~i~IPT 126 (376)
T 1kq3_A 115 YK------LKKPVVIVPT 126 (376)
T ss_dssp HH------TTCCEEEEES
T ss_pred Hh------cCCCEEEecC
Confidence 42 2689999997
No 48
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=50.23 E-value=38 Score=33.93 Aligned_cols=90 Identities=10% Similarity=0.065 Sum_probs=51.3
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcch-HHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003783 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGH-AKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 276 ~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~gh-A~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
++.+.+.||+.-..........+...++..+++.|+.+.+..+..... ..++.+.+. ...+|+||+++.+..- +.+.
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~~~-~~~~ 83 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILE-TGSADGVIISKIEPND-PRVR 83 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHH-HTCCSEEEEESCCTTC-HHHH
T ss_pred CCCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHH-cCCccEEEEecCCCCc-HHHH
Confidence 456778888764432111112222466777888898887776654332 233433332 2458999999876442 5566
Q ss_pred HHHcCCCcccCCCccEEEee
Q 003783 355 GLLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 355 GL~~r~d~~~a~~iPLGIIP 374 (795)
.|... ++|+-++-
T Consensus 84 ~l~~~-------~iPvV~i~ 96 (288)
T 3gv0_A 84 FMTER-------NMPFVTHG 96 (288)
T ss_dssp HHHHT-------TCCEEEES
T ss_pred HHhhC-------CCCEEEEC
Confidence 66544 47766553
No 49
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=49.36 E-value=34 Score=36.69 Aligned_cols=84 Identities=12% Similarity=0.145 Sum_probs=46.1
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC------CcchHHHHHHHhhhcCCC---CCeEEEcCchHH
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT------SAGHAKNLASTVDISSCP---DGIICVGGDGII 349 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~------~~ghA~ela~~l~~~~~~---D~IVvvGGDGTl 349 (795)
+|++||.++... +.+.+.+...| .+| ++.++.-. ......++++.+.. .+. |.||++|| |.+
T Consensus 32 ~~~liVtd~~~~-----~~~~~~v~~~L-~~g-~~~~~~~~~~e~~p~~~~v~~~~~~~~~-~~~~r~d~iIavGG-Gsv 102 (354)
T 1xah_A 32 DQSFLLIDEYVN-----QYFANKFDDIL-SYE-NVHKVIIPAGEKTKTFEQYQETLEYILS-HHVTRNTAIIAVGG-GAT 102 (354)
T ss_dssp SCEEEEEEHHHH-----HHHHHHHC--------CEEEEEECSGGGGCSHHHHHHHHHHHHT-TCCCTTCEEEEEES-HHH
T ss_pred CeEEEEECCcHH-----HHHHHHHHHHH-hcC-CeEEEEECCCCCCCCHHHHHHHHHHHHH-cCCCCCceEEEECC-hHH
Confidence 789999986432 22446777788 777 44433222 12233444444432 234 89999998 788
Q ss_pred HHHHHHHHcCCCcccCCCccEEEeec
Q 003783 350 NEVLNGLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 350 nEVvNGL~~r~d~~~a~~iPLGIIP~ 375 (795)
..++-.+...- ...+|+..||.
T Consensus 103 ~D~ak~vA~~~----~rgip~i~IPT 124 (354)
T 1xah_A 103 GDFAGFVAATL----LRGVHFIQVPT 124 (354)
T ss_dssp HHHHHHHHHHB----TTCCEEEEEEC
T ss_pred HHHHHHHHHHh----ccCCCEEEECC
Confidence 88777665321 12689999997
No 50
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=49.19 E-value=71 Score=32.67 Aligned_cols=92 Identities=17% Similarity=0.290 Sum_probs=51.1
Q ss_pred CCeEEEEEcCCC------CCCCchhhHHHhHH--HHHHHcCCeEEEEEeCCcc--------------------------h
Q 003783 278 PPKMLVILNPRS------GRGRSSKVFHDIVE--PIFKLAGFKLEVVKTTSAG--------------------------H 323 (795)
Q Consensus 278 ~krllVIvNP~S------G~Gka~ki~~~~I~--plL~~aGi~~~v~~T~~~g--------------------------h 323 (795)
++|++||+-... |...+.... +.+. .+|+++|+++++...+... +
T Consensus 9 mkkvlvvlt~~~~~~~~~g~~tG~~~~-E~~~p~~~l~~aG~~V~~aSp~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~ 87 (247)
T 3n7t_A 9 PRKALLAITSAHPPFWPDGKRTGLFFS-EALHPFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEHNHF 87 (247)
T ss_dssp CSEEEEECCCCCCBCSTTSCBCCBCHH-HHHHHHHHHHHTTCEEEEEESSSCCCBCSGGGSGGGCCHHHHHHHTCSSCHH
T ss_pred CCeEEEEECCCCcccCCCCCCCcccHH-HHHHHHHHHHHCCCEEEEEeCCCCcccCcccccccccCHHHHHHHHhhhHHH
Confidence 578988876532 222222211 2333 4788999999887643211 1
Q ss_pred HHHHHH------HhhhcCCCCCeEEEcCchHHH---------HHHHHHHcCCCcccCCCccEEEeecCCc
Q 003783 324 AKNLAS------TVDISSCPDGIICVGGDGIIN---------EVLNGLLSRGNQKEGISIPIGIIPAGSD 378 (795)
Q Consensus 324 A~ela~------~l~~~~~~D~IVvvGGDGTln---------EVvNGL~~r~d~~~a~~iPLGIIP~GTG 378 (795)
...+.. +++. ..||+||+.||-|+.. +++...... ..+||-|=.|..
T Consensus 88 ~~~l~~~~~~l~~v~~-~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~-------gk~iaaIC~Gp~ 149 (247)
T 3n7t_A 88 MEKMNKQVFKAGDLAP-HDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKR-------GGVIGAVCHGPA 149 (247)
T ss_dssp HHHHHHCCEEGGGSCG-GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHT-------TCEEEEETTGGG
T ss_pred HHHHhccCCCHHHCCh-hhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHc-------CCEEEEEChHHH
Confidence 111222 1111 2479999999999842 233333332 468888877774
No 51
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=48.28 E-value=54 Score=32.63 Aligned_cols=91 Identities=13% Similarity=0.048 Sum_probs=54.4
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHc-CCeEEEEEeCC----cchHHHHHHHhhhcCCCCCeEEEcCchH-H
Q 003783 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLA-GFKLEVVKTTS----AGHAKNLASTVDISSCPDGIICVGGDGI-I 349 (795)
Q Consensus 276 ~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~a-Gi~~~v~~T~~----~ghA~ela~~l~~~~~~D~IVvvGGDGT-l 349 (795)
++.+++.||+.-.....-...++ +.++..+++. |+.+.+..+.. .....++.+.+.. ..+|+||+++.|.. .
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~-~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~~~~~ 83 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQ-KGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIE-EQPDGVMFAPTVPQYT 83 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHH-HHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHT-TCCSEEEECCSSGGGT
T ss_pred CCcceEEEEecCCCCchHHHHHH-HHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHh-cCCCEEEECCCChHHH
Confidence 35566777775542222222333 5677788888 88888776532 2222334455533 45899999998874 5
Q ss_pred HHHHHHHHcCCCcccCCCccEEEeec
Q 003783 350 NEVLNGLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 350 nEVvNGL~~r~d~~~a~~iPLGIIP~ 375 (795)
.+++..+... ++|+-++-.
T Consensus 84 ~~~~~~~~~~-------~iPvV~~~~ 102 (304)
T 3gbv_A 84 KGFTDALNEL-------GIPYIYIDS 102 (304)
T ss_dssp HHHHHHHHHH-------TCCEEEESS
T ss_pred HHHHHHHHHC-------CCeEEEEeC
Confidence 6667766554 477766644
No 52
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=48.19 E-value=40 Score=30.68 Aligned_cols=21 Identities=19% Similarity=0.548 Sum_probs=19.6
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003783 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
+.|.|.+++.+|++.|+++|+
T Consensus 94 ~~y~f~A~s~~e~~~Wv~aI~ 114 (120)
T 4a6h_A 94 HNWVFKADSYESMMSWFDNLK 114 (120)
T ss_dssp CEEEEECSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHH
Confidence 489999999999999999995
No 53
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=47.55 E-value=88 Score=30.15 Aligned_cols=61 Identities=8% Similarity=0.091 Sum_probs=38.6
Q ss_pred cccCCCCCeEEEEEcCC--------------CCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhh
Q 003783 272 IFRCKSPPKMLVILNPR--------------SGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVD 332 (795)
Q Consensus 272 ~~~~~r~krllVIvNP~--------------SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~ 332 (795)
|.....++.+.||||-. =....+...=.+.++.+|+.-|++++++.=-...+..+.++++.
T Consensus 16 Y~m~~~~rG~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~ 90 (164)
T 1qtn_A 16 YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQ 90 (164)
T ss_dssp CCCCCSSCCEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHH
Confidence 44445667788888753 11233333334678899999999998876655555555555553
No 54
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=46.99 E-value=86 Score=31.03 Aligned_cols=89 Identities=13% Similarity=0.087 Sum_probs=55.0
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCch-HHHHHHH
Q 003783 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDG-IINEVLN 354 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDG-TlnEVvN 354 (795)
+.+++.||+.-.. ..-...++ +.++..+++.|+++.+..+.... ...++.+.+... .+|+||+.+.|. ...+.+.
T Consensus 4 ~~~~Ig~i~~~~~-~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~~~~~~~~~~~~ 80 (291)
T 3l49_A 4 EGKTIGITAIGTD-HDWDLKAY-QAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQ-KPDAIIEQLGNLDVLNPWLQ 80 (291)
T ss_dssp TTCEEEEEESCCS-SHHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHH-CCSEEEEESSCHHHHHHHHH
T ss_pred CCcEEEEEeCCCC-ChHHHHHH-HHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHc-CCCEEEEeCCChhhhHHHHH
Confidence 4567777775332 21112333 56778889999998877665432 223444554333 489999999985 4566677
Q ss_pred HHHcCCCcccCCCccEEEeec
Q 003783 355 GLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 355 GL~~r~d~~~a~~iPLGIIP~ 375 (795)
.+... ++|+-.+-.
T Consensus 81 ~~~~~-------~iPvV~~~~ 94 (291)
T 3l49_A 81 KINDA-------GIPLFTVDT 94 (291)
T ss_dssp HHHHT-------TCCEEEESC
T ss_pred HHHHC-------CCcEEEecC
Confidence 76654 578766643
No 55
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=46.98 E-value=99 Score=27.20 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=18.9
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003783 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
++|.|.+++.+++++|+++|.
T Consensus 96 ~~~~l~a~s~~e~~~Wi~al~ 116 (129)
T 1x05_A 96 VHYFLQAATPKERTEWIKAIQ 116 (129)
T ss_dssp CCCEEECSSHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHH
Confidence 458899999999999999995
No 56
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=46.95 E-value=1.1e+02 Score=31.61 Aligned_cols=87 Identities=15% Similarity=0.075 Sum_probs=52.9
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003783 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 276 ~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
++.+.+.||+.-. ...-...++ +.++..+++.|+.+.+..+.... ...++.+.+.. ..+|+||+++-+.+- +.+.
T Consensus 66 ~~~~~Ig~i~~~~-~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~-~~vdGiIi~~~~~~~-~~~~ 141 (344)
T 3kjx_A 66 NRVNLVAVIIPSL-SNMVFPEVL-TGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLS-WRPSGVIIAGLEHSE-AARA 141 (344)
T ss_dssp SCCSEEEEEESCS-SSSSHHHHH-HHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHT-TCCSEEEEECSCCCH-HHHH
T ss_pred CCCCEEEEEeCCC-CcHHHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh-CCCCEEEEECCCCCH-HHHH
Confidence 3556777777433 222223333 46777888889988777665432 22344455433 458999999877654 5555
Q ss_pred HHHcCCCcccCCCccEEEe
Q 003783 355 GLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 355 GL~~r~d~~~a~~iPLGII 373 (795)
.|... ++|+-++
T Consensus 142 ~l~~~-------~iPvV~i 153 (344)
T 3kjx_A 142 MLDAA-------GIPVVEI 153 (344)
T ss_dssp HHHHC-------SSCEEEE
T ss_pred HHHhC-------CCCEEEE
Confidence 55543 5777766
No 57
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=46.13 E-value=1.3e+02 Score=30.86 Aligned_cols=89 Identities=13% Similarity=0.058 Sum_probs=52.5
Q ss_pred CCCCeEEEEEcC--CCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcch-HHHHHHHhhhcCCCCCeEEEcCchHHHHH
Q 003783 276 KSPPKMLVILNP--RSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGH-AKNLASTVDISSCPDGIICVGGDGIINEV 352 (795)
Q Consensus 276 ~r~krllVIvNP--~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~gh-A~ela~~l~~~~~~D~IVvvGGDGTlnEV 352 (795)
++.+.+.||+.- ... .-...++ ..++..+++.|+.+.+..+..... ..++.+.+.. ..+|+||+++.+..-.++
T Consensus 59 ~~~~~Igvi~~~~~~~~-~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~~~~~ 135 (338)
T 3dbi_A 59 KSTQTLGLVVTNTLYHG-IYFSELL-FHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLD-LRCDAIMIYPRFLSVDEI 135 (338)
T ss_dssp -CCSEEEEEECTTTTST-THHHHHH-HHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHH-TTCSEEEECCSSSCHHHH
T ss_pred CCCCEEEEEecCCcccC-hhHHHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh-CCCCEEEEeCCCCChHHH
Confidence 456677777754 222 1112333 567778889999888777654332 2334455533 358999999988765445
Q ss_pred HHHHHcCCCcccCCCccEEEee
Q 003783 353 LNGLLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 353 vNGL~~r~d~~~a~~iPLGIIP 374 (795)
..-+... .+|+-++-
T Consensus 136 ~~~~~~~-------~iPvV~~~ 150 (338)
T 3dbi_A 136 DDIIDAH-------SQPIMVLN 150 (338)
T ss_dssp HHHHHHC-------SSCEEEES
T ss_pred HHHHHcC-------CCCEEEEc
Confidence 4444332 46766653
No 58
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=46.12 E-value=1e+02 Score=30.53 Aligned_cols=86 Identities=14% Similarity=0.108 Sum_probs=53.8
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCchH----HHHHH
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGI----INEVL 353 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDGT----lnEVv 353 (795)
+.+.||+.-.+. .-...++ +.++..+++.|+.+.+..+.... ...++.+.+.. ..+|+||+++.|.. ..+++
T Consensus 16 ~~Igvi~~~~~~-~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~~~~~~~~~~ 92 (298)
T 3tb6_A 16 KTIGVLTTYISD-YIFPSII-RGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLS-QHIDGLIVEPTKSALQTPNIGYY 92 (298)
T ss_dssp CEEEEEESCSSS-TTHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-TCCSEEEECCSSTTSCCTTHHHH
T ss_pred ceEEEEeCCCCc-hHHHHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHH-CCCCEEEEecccccccCCcHHHH
Confidence 667777654332 2223344 56788899999998887765432 22344555543 45899999998863 34566
Q ss_pred HHHHcCCCcccCCCccEEEee
Q 003783 354 NGLLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 354 NGL~~r~d~~~a~~iPLGIIP 374 (795)
..|... ++|+-++-
T Consensus 93 ~~~~~~-------~iPvV~~~ 106 (298)
T 3tb6_A 93 LNLEKN-------GIPFAMIN 106 (298)
T ss_dssp HHHHHT-------TCCEEEES
T ss_pred HHHHhc-------CCCEEEEe
Confidence 666554 57776663
No 59
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=45.80 E-value=43 Score=33.55 Aligned_cols=87 Identities=9% Similarity=0.015 Sum_probs=50.4
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-chHHH---HHHHhhhcCCCCCeEEEcCchHHHHH
Q 003783 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKN---LASTVDISSCPDGIICVGGDGIINEV 352 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~-ghA~e---la~~l~~~~~~D~IVvvGGDGTlnEV 352 (795)
+.+++.||+ |.....-...++ +.++..+++.|+.+.+..+... ....+ +.+.+.. ..+|+||+++.+.+ .+.
T Consensus 7 ~~~~Ig~i~-~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~-~~~ 82 (290)
T 2rgy_A 7 QLGIIGLFV-PTFFGSYYGTIL-KQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIG-RDCDGVVVISHDLH-DED 82 (290)
T ss_dssp -CCEEEEEC-SCSCSHHHHHHH-HHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHH-TTCSEEEECCSSSC-HHH
T ss_pred CCCeEEEEe-CCCCCchHHHHH-HHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHh-cCccEEEEecCCCC-HHH
Confidence 455666666 433221112223 4567788888998877655432 22334 5555543 35899999998766 456
Q ss_pred HHHHHcCCCcccCCCccEEEee
Q 003783 353 LNGLLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 353 vNGL~~r~d~~~a~~iPLGIIP 374 (795)
+..|... ++|+-++-
T Consensus 83 ~~~l~~~-------~iPvV~~~ 97 (290)
T 2rgy_A 83 LDELHRM-------HPKMVFLN 97 (290)
T ss_dssp HHHHHHH-------CSSEEEES
T ss_pred HHHHhhc-------CCCEEEEc
Confidence 6655432 47776663
No 60
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=45.52 E-value=88 Score=30.82 Aligned_cols=61 Identities=15% Similarity=0.082 Sum_probs=38.9
Q ss_pred cccCCCCCeEEEEEcCCC-------CCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhh
Q 003783 272 IFRCKSPPKMLVILNPRS-------GRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVD 332 (795)
Q Consensus 272 ~~~~~r~krllVIvNP~S-------G~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~ 332 (795)
|....+++.+.||||-.. ....+...=.+.++.+|+.-|++++++.=-...+..+..+++.
T Consensus 37 Y~m~~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~~dlt~~em~~~l~~~~ 104 (179)
T 3p45_A 37 YKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVS 104 (179)
T ss_dssp CCCCSSBCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHH
T ss_pred CCCCCCccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHh
Confidence 444456777777776542 2233333334678999999999998887555555555555553
No 61
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=45.41 E-value=35 Score=34.44 Aligned_cols=65 Identities=11% Similarity=0.171 Sum_probs=36.0
Q ss_pred CCCCeEEEEE-cCCCCC--CCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEE
Q 003783 276 KSPPKMLVIL-NPRSGR--GRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICV 343 (795)
Q Consensus 276 ~r~krllVIv-NP~SG~--Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvv 343 (795)
..+++++||+ .|.-+. +...+.+.+.+...+++.|.+++++......+..+..+++. ..|.||++
T Consensus 23 ~~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~---~aD~iv~~ 90 (218)
T 3rpe_A 23 NAMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYL---WADTIIYQ 90 (218)
T ss_dssp -CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHH---HCSEEEEE
T ss_pred ccCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHH---hCCEEEEE
Confidence 4567787776 665321 22222333567778888899988877654334444434432 24555543
No 62
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=45.38 E-value=83 Score=32.81 Aligned_cols=113 Identities=15% Similarity=0.007 Sum_probs=62.2
Q ss_pred cccCCCCCeEEEEEcCCC-------CCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhc--CCCCCe-E
Q 003783 272 IFRCKSPPKMLVILNPRS-------GRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDIS--SCPDGI-I 341 (795)
Q Consensus 272 ~~~~~r~krllVIvNP~S-------G~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~--~~~D~I-V 341 (795)
|....+++++.+|||-.. ....+...=.+.++.+|+..|++++++.=-...+..+..+++... ..+|.+ |
T Consensus 14 Y~m~~~~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~~h~~~d~~vv 93 (278)
T 3od5_A 14 YKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVC 93 (278)
T ss_dssp CCCCSSBCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHSCCTTBSCEEE
T ss_pred cCCCCCCcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhhcccCCCEEEE
Confidence 444456777877776542 122232233367889999999998887655555555555555332 224543 2
Q ss_pred E----------EcCchH--HHHHHHHHHcCCCcccCCCccEEEeecCCcchhhhh
Q 003783 342 C----------VGGDGI--INEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (795)
Q Consensus 342 v----------vGGDGT--lnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArs 384 (795)
+ .|=||. |.++++-+-...-..-..++-|-||-+=-||.+...
T Consensus 94 ~ilSHG~~g~i~g~D~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~~~g 148 (278)
T 3od5_A 94 VFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVP 148 (278)
T ss_dssp EEESCEETTEEECSSSEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSSBCBCE
T ss_pred EEECCCCCCEEEEeCCeEEHHHHHHHhccccChhhcCCCcEEEEecCCCCcccCC
Confidence 2 344553 344444332211111112456888888777777653
No 63
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=45.38 E-value=71 Score=27.35 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=41.1
Q ss_pred eeeecceeeeccc--------ccCCcceEEEEecC---C--cceEEEEEeecCCCCCccccccCCeeeEeEEEEecCCHH
Q 003783 162 AKLTSKALVWGSH--------VLPLDDIVSVSYNN---G--LRHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTTE 228 (795)
Q Consensus 162 ~~~~~~~~~~~~~--------~l~l~d~~~~~~~~---~--~~~~~i~~y~~~k~~~g~~~~~~~~r~~~~~~f~~~~~~ 228 (795)
..|+...|.|.+. .|.|.++..+.... . ...|.|..- .... -....+.|.|.+++.+
T Consensus 29 fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~f~i~~~--~~~~--------~~~~~~~~~l~a~s~~ 98 (118)
T 1v89_A 29 FVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPA--SWDQ--------NRMGQDSYVLMASSQA 98 (118)
T ss_dssp EEEETTEEEEESSSSCCSCSEEECSTTEEEEEECCCSSCCCCCEEEEEES--CCSS--------CCSSCCCEEEECSSHH
T ss_pred EEEECCEEEEEeCCCCCCceEEEECCCCEEEEcCcCcccCCcceEEEECC--cccc--------ccCCCcEEEEECCCHH
Confidence 4456666766633 67888876554321 1 234666541 1100 0112467889999999
Q ss_pred HHHHHHHhhh
Q 003783 229 EAIQWVGGFA 238 (795)
Q Consensus 229 ~a~~W~~~~~ 238 (795)
++++|+.+|.
T Consensus 99 e~~~Wi~al~ 108 (118)
T 1v89_A 99 EMEEWVKFLR 108 (118)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999995
No 64
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=45.22 E-value=42 Score=28.98 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=19.3
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003783 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
++|.|.+++.++.++|+++|+
T Consensus 77 r~~~l~a~s~~e~~~Wi~ai~ 97 (113)
T 1pls_A 77 QDHFFQAAFLEERDAWVRDIN 97 (113)
T ss_dssp EEEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHH
Confidence 578899999999999999995
No 65
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=45.11 E-value=14 Score=39.66 Aligned_cols=87 Identities=16% Similarity=0.098 Sum_probs=50.6
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC----CcchHHHHHHHhhhcCCC---CCeEEEcCchHHH
Q 003783 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT----SAGHAKNLASTVDISSCP---DGIICVGGDGIIN 350 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~----~~ghA~ela~~l~~~~~~---D~IVvvGGDGTln 350 (795)
.+|++||.++...+. +.+.+...|+.+++.+.++.-. ......++.+.+.. .+. |.||++|| |.+.
T Consensus 26 ~~~~livtd~~v~~~-----~~~~v~~~L~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~-~~~~r~d~iIavGG-Gsv~ 98 (343)
T 3clh_A 26 KQKALIISDSIVAGL-----HLPYLLERLKALEVRVCVIESGEKYKNFHSLERILNNAFE-MQLNRHSLMIALGG-GVIS 98 (343)
T ss_dssp SSCEEEEEEHHHHTT-----THHHHHTTEECSCEEEEEECSSGGGCSHHHHHHHHHHHHH-TTCCTTCEEEEEES-HHHH
T ss_pred CCEEEEEECCcHHHH-----HHHHHHHHHHhCCcEEEEeCCCCCCCCHHHHHHHHHHHHh-cCCCCCceEEEECC-hHHH
Confidence 478999998765432 2246666676555544333221 12233444444432 234 89999998 7777
Q ss_pred HHHHHHHcCCCcccCCCccEEEeec
Q 003783 351 EVLNGLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 351 EVvNGL~~r~d~~~a~~iPLGIIP~ 375 (795)
.++-.+...- ...+|+..||.
T Consensus 99 D~ak~~A~~~----~rgip~i~IPT 119 (343)
T 3clh_A 99 DMVGFASSIY----FRGIDFINIPT 119 (343)
T ss_dssp HHHHHHHHHB----TTCCEEEEEEC
T ss_pred HHHHHHHHHh----ccCCCEEEeCC
Confidence 7776665211 02689999994
No 66
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=44.92 E-value=1.1e+02 Score=30.30 Aligned_cols=88 Identities=13% Similarity=0.070 Sum_probs=49.6
Q ss_pred CCCCeEEEEEcC--CCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-chHHHHHHHhhhcCCCCCeEEEcCchHHHHH
Q 003783 276 KSPPKMLVILNP--RSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEV 352 (795)
Q Consensus 276 ~r~krllVIvNP--~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~-ghA~ela~~l~~~~~~D~IVvvGGDGTlnEV 352 (795)
++..++.||+.- ... .-...++ +.++..+++.|+++.+..+... ....++.+.+.. ..+|+||+++.+.+ .+.
T Consensus 17 ~~~~~Ig~i~~~~~~~~-~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgii~~~~~~~-~~~ 92 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHG-IYFSELL-FHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLD-LRCDAIMIYPRFLS-VDE 92 (296)
T ss_dssp --CCEEEEEECGGGCC---CHHHHH-HHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHH-TTCSEEEEECSSSC-HHH
T ss_pred CCCceEEEEeCCcccCC-chHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh-cCCCEEEEecCCCC-hHH
Confidence 355677777743 222 2222333 4677788889988876654432 222344555543 35899999988754 245
Q ss_pred HHHHHc-CCCcccCCCccEEEee
Q 003783 353 LNGLLS-RGNQKEGISIPIGIIP 374 (795)
Q Consensus 353 vNGL~~-r~d~~~a~~iPLGIIP 374 (795)
+..|.. . ++|+-++-
T Consensus 93 ~~~l~~~~-------~iPvV~~~ 108 (296)
T 3brq_A 93 IDDIIDAH-------SQPIMVLN 108 (296)
T ss_dssp HHHHHHTC-------SSCEEEES
T ss_pred HHHHHhcC-------CCCEEEEc
Confidence 555544 3 57776653
No 67
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=44.75 E-value=1.6e+02 Score=30.44 Aligned_cols=88 Identities=9% Similarity=-0.031 Sum_probs=51.2
Q ss_pred CCeEEEEEc--CCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHH
Q 003783 278 PPKMLVILN--PRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (795)
Q Consensus 278 ~krllVIvN--P~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNG 355 (795)
..++.||+. +.....-...++ +-++..+++.|+++.+..+....+..+..+.+.. ..+|+||++|..- .+.+..
T Consensus 4 ~~~Ig~v~~~g~~~d~~f~~~~~-~Gi~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~-~~~dgIi~~~~~~--~~~~~~ 79 (318)
T 2fqx_A 4 DFVVGMVTDSGDIDDKSFNQQVW-EGISRFAQENNAKCKYVTASTDAEYVPSLSAFAD-ENMGLVVACGSFL--VEAVIE 79 (318)
T ss_dssp CCEEEEEESSSCTTSSSHHHHHH-HHHHHHHHHTTCEEEEEECCSGGGHHHHHHHHHH-TTCSEEEEESTTT--HHHHHH
T ss_pred CcEEEEEEcCCCCCCccHHHHHH-HHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHH-cCCCEEEECChhH--HHHHHH
Confidence 457888885 333212222333 4567788888998887777655454555566544 3589999997532 222333
Q ss_pred HHcCCCcccCCCccEEEee
Q 003783 356 LLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 356 L~~r~d~~~a~~iPLGIIP 374 (795)
+... ..++|+.++-
T Consensus 80 ~a~~-----~p~~p~v~id 93 (318)
T 2fqx_A 80 TSAR-----FPKQKFLVID 93 (318)
T ss_dssp HHHH-----CTTSCEEEES
T ss_pred HHHH-----CCCCEEEEEc
Confidence 3321 1257887774
No 68
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=44.26 E-value=80 Score=32.80 Aligned_cols=87 Identities=15% Similarity=0.210 Sum_probs=49.5
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHH
Q 003783 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNG 355 (795)
+.+.+.||+.- ....-...++ +.++..+++.|+.+.+..+.... ...++.+.+.. ..+|+||+++.+.. .+.+..
T Consensus 65 ~s~~Igvi~~~-~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~-~~~~~~ 140 (348)
T 3bil_A 65 RSNTIGVIVPS-LINHYFAAMV-TEIQSTASKAGLATIITNSNEDATTMSGSLEFLTS-HGVDGIICVPNEEC-ANQLED 140 (348)
T ss_dssp ---CEEEEESC-SSSHHHHHHH-HHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHH-TTCSCEEECCCGGG-HHHHHH
T ss_pred CCCEEEEEeCC-CCCcHHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHh-CCCCEEEEeCCCCC-hHHHHH
Confidence 45667777742 2211112233 45677888899988777665322 22344555543 35899999998766 456666
Q ss_pred HHcCCCcccCCCccEEEee
Q 003783 356 LLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 356 L~~r~d~~~a~~iPLGIIP 374 (795)
|... ++|+-++-
T Consensus 141 l~~~-------~iPvV~i~ 152 (348)
T 3bil_A 141 LQKQ-------GMPVVLVD 152 (348)
T ss_dssp HHHC--------CCEEEES
T ss_pred HHhC-------CCCEEEEc
Confidence 6543 47776663
No 69
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=44.26 E-value=68 Score=31.65 Aligned_cols=87 Identities=15% Similarity=0.155 Sum_probs=49.2
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003783 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 276 ~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
++.+++.||+.-.. ..-...++ +.++..+++.|+.+.+..+.... ...++.+.+.. ..+|+||+++.+ .+.+.
T Consensus 6 ~~~~~Ig~i~~~~~-~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~~dgiIi~~~~---~~~~~ 79 (277)
T 3e61_A 6 RKSKLIGLLLPDMS-NPFFTLIA-RGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVS-HNCTGMISTAFN---ENIIE 79 (277)
T ss_dssp ----CEEEEESCTT-SHHHHHHH-HHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECGGG---HHHHH
T ss_pred CCCCEEEEEECCCC-CHHHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh-CCCCEEEEecCC---hHHHH
Confidence 35566777774322 21122333 46777888999998887766532 22344555533 358999999854 44555
Q ss_pred -HHHcCCCcccCCCccEEEeec
Q 003783 355 -GLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 355 -GL~~r~d~~~a~~iPLGIIP~ 375 (795)
.|... .+|+-++-.
T Consensus 80 ~~l~~~-------~iPvV~~~~ 94 (277)
T 3e61_A 80 NTLTDH-------HIPFVFIDR 94 (277)
T ss_dssp HHHHHC--------CCEEEGGG
T ss_pred HHHHcC-------CCCEEEEec
Confidence 56544 577766643
No 70
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=44.07 E-value=1.2e+02 Score=30.66 Aligned_cols=87 Identities=13% Similarity=0.020 Sum_probs=54.2
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCchH-HHHHHHHH
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGI-INEVLNGL 356 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDGT-lnEVvNGL 356 (795)
+++.||+.-.+..- -..++ +.++..+++.|+.+.+..+.... ...++.+.+.. ..+|+||+++-|.. +.+.+..+
T Consensus 3 ~~Igvi~~~~~~~~-~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~~~~~~~ 79 (313)
T 3m9w_A 3 VKIGMAIDDLRLER-WQKDR-DIFVKKAESLGAKVFVQSANGNEETQMSQIENMIN-RGVDVLVIIPYNGQVLSNVVKEA 79 (313)
T ss_dssp CEEEEEESCCSSST-THHHH-HHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEEECSSTTSCHHHHHHH
T ss_pred cEEEEEeCCCCChH-HHHHH-HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChhhhHHHHHHH
Confidence 45666664333322 22344 57888899999998877764332 22344555533 35899999998875 36777777
Q ss_pred HcCCCcccCCCccEEEeec
Q 003783 357 LSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 357 ~~r~d~~~a~~iPLGIIP~ 375 (795)
... ++|+-.+-.
T Consensus 80 ~~~-------~iPvV~~~~ 91 (313)
T 3m9w_A 80 KQE-------GIKVLAYDR 91 (313)
T ss_dssp HTT-------TCEEEEESS
T ss_pred HHC-------CCeEEEECC
Confidence 654 578766643
No 71
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=43.95 E-value=68 Score=31.52 Aligned_cols=86 Identities=16% Similarity=0.194 Sum_probs=48.9
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-chHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHH
Q 003783 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~-ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNG 355 (795)
+.+++.||+.-. ...-...++ +.++..+++.|+.+.+..+... ....++.+.+.. ..+|+||+++.+.. .+.+..
T Consensus 2 ~s~~Ig~i~~~~-~~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgii~~~~~~~-~~~~~~ 77 (275)
T 3d8u_A 2 NAYSIALIIPSL-FEKACAHFL-PSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLE-SRPAGVVLFGSEHS-QRTHQL 77 (275)
T ss_dssp --CEEEEEESCS-SCHHHHHHH-HHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHT-SCCCCEEEESSCCC-HHHHHH
T ss_pred CceEEEEEeCCC-ccccHHHHH-HHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHh-cCCCEEEEeCCCCC-HHHHHH
Confidence 345677777432 211112233 4567788889988877665432 223344555543 45899999988754 355555
Q ss_pred HHcCCCcccCCCccEEEe
Q 003783 356 LLSRGNQKEGISIPIGII 373 (795)
Q Consensus 356 L~~r~d~~~a~~iPLGII 373 (795)
|... ++|+-++
T Consensus 78 l~~~-------~iPvV~~ 88 (275)
T 3d8u_A 78 LEAS-------NTPVLEI 88 (275)
T ss_dssp HHHH-------TCCEEEE
T ss_pred HHhC-------CCCEEEE
Confidence 5432 4777665
No 72
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Probab=43.70 E-value=45 Score=31.18 Aligned_cols=69 Identities=22% Similarity=0.376 Sum_probs=46.6
Q ss_pred eeeeeecceeeeccc--------ccCCcceEEEEecCC----cceEEEEEeecCCCCCccccccCCeeeEeEEEEecCCH
Q 003783 160 VNAKLTSKALVWGSH--------VLPLDDIVSVSYNNG----LRHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTT 227 (795)
Q Consensus 160 ~~~~~~~~~~~~~~~--------~l~l~d~~~~~~~~~----~~~~~i~~y~~~k~~~g~~~~~~~~r~~~~~~f~~~~~ 227 (795)
.===||..-|.|.+. .|+|+.+.--...+| -..|.||. |-.+.-. + -.++|++.+++.
T Consensus 33 rWFVLt~~~L~yyKd~~eke~~G~IpL~~~~vr~v~~~~~~rk~~F~l~~-~d~r~v~------~---~h~~y~LsA~t~ 102 (125)
T 1dyn_A 33 YWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFN-TEQRNVY------K---DYRQLELACETQ 102 (125)
T ss_dssp EEEEEESSEEEEESSTTCSCEEEEEECTTEEEEECCSCSSSSCEEEEEEE-TTSSCSS------T---TCSSEEEEESSH
T ss_pred eEEEEeccceeeecCCcccccceEEECCCceEeccCCCCCCCceEEEEEC-CCCcccc------c---cceEEEEeCCCH
Confidence 334589999999966 688988754332332 33477774 3222110 1 247899999999
Q ss_pred HHHHHHHHhhh
Q 003783 228 EEAIQWVGGFA 238 (795)
Q Consensus 228 ~~a~~W~~~~~ 238 (795)
++.+.|..+|.
T Consensus 103 ee~~~Wi~s~~ 113 (125)
T 1dyn_A 103 EEVDSWKASFL 113 (125)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999984
No 73
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=43.59 E-value=56 Score=32.72 Aligned_cols=89 Identities=9% Similarity=0.065 Sum_probs=50.7
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-chHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003783 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 276 ~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~-ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
++.+++.||+.- ....-...++ +.++..+++.|+.+.+..+... ....++.+.+.. ..+|+||+++.+.+-.+++.
T Consensus 18 ~~~~~Ig~i~~~-~~~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgii~~~~~~~~~~~~~ 94 (293)
T 2iks_A 18 GRTRSIGLVIPD-LENTSYTRIA-NYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQ-RQVDAIIVSTSLPPEHPFYQ 94 (293)
T ss_dssp CCCCEEEEEESC-SCSHHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECCSSCTTCHHHH
T ss_pred CCCcEEEEEeCC-CcCcHHHHHH-HHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHH-cCCCEEEEeCCCCCcHHHHH
Confidence 455677777742 2211112223 4567788889998877766532 222344555543 35899999988764333444
Q ss_pred HHHcCCCcccCCCccEEEee
Q 003783 355 GLLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 355 GL~~r~d~~~a~~iPLGIIP 374 (795)
.+.. .++|+-++-
T Consensus 95 ~~~~-------~~iPvV~~~ 107 (293)
T 2iks_A 95 RWAN-------DPFPIVALD 107 (293)
T ss_dssp TTTT-------SSSCEEEEE
T ss_pred HHHh-------CCCCEEEEC
Confidence 4322 257776663
No 74
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=43.15 E-value=13 Score=38.47 Aligned_cols=101 Identities=10% Similarity=0.081 Sum_probs=57.5
Q ss_pred CcEEEeccEEEEEEeccc-cccc-CCCCccCcCCCCCCCeEEEEEEcCcChHHHHHHHHHhccCCCCCCCceEEEEEEEE
Q 003783 673 NWIVKKGQYLGIMICNHA-CRTV-QSAQVVAPRAEYDDNTMDMLLVHGSGRLRLARFFLLLQMGRHLSLPYVEYVKVKSV 750 (795)
Q Consensus 673 ~W~~ieG~Fv~v~v~N~~-~~~~-~~d~~lAP~A~l~DG~LDLvlV~~~sR~~Ll~~l~~~~~G~hl~~P~V~~ikvka~ 750 (795)
.+..+.++-++|...|.+ .|.. +....+.|.+. ++++.......+.++ +.+..|.|-- ..+.+
T Consensus 143 ~~~~~~~DGlivsTptGSTaY~~SaGGpiv~P~~~-------~~~ltpi~p~~l~~~-------r~~~~p~v~~-~~~~i 207 (272)
T 2i2c_A 143 HFERFRGDGLCMSTPSGTTAYNKSLGGALMHPSIE-------AMQLTEMASINNRVY-------RTIGSPLVFP-KHHVV 207 (272)
T ss_dssp EEEEEEESEEEEECTGGGGTHHHHTTCCCCCTTSC-------EEEEEEESCCCSSSC-------CCCCSCEEEE-TTCCE
T ss_pred EEEEEECCEEEEEccccHHHHHHcCCCCeeCCCCC-------ceEEeCCCCccchhh-------hccCCcEEeC-CCCEE
Confidence 356677888887766555 2212 23456677643 555543322221111 3334454321 23456
Q ss_pred EEEecCCCCCceeecCceee--cCeeEEEeeecccccccc
Q 003783 751 KIKAGKHTHNSCGIDGELFP--LNGQVISSLLPEQCRLIG 788 (795)
Q Consensus 751 rIep~~~~~~~i~VDGE~ip--~~~~V~~~vlP~~~rlig 788 (795)
+|+.....+..+.+|||.+. ...+|.+++.|..++++-
T Consensus 208 ~i~~~~~~~~~~~~DG~~~~~~~~~~v~i~~~~~~~~~i~ 247 (272)
T 2i2c_A 208 SLQPVNDKDFQISVDHLSILHRDVQEIRYEVSAKKIHFAR 247 (272)
T ss_dssp EEEESSCCCEEEEETTEEEEECSEEEEEEEEEEEEEEEEE
T ss_pred EEEEcCCCCEEEEECCCEeecCCCCEEEEEEcCCEEEEEE
Confidence 66543224456899999975 234689999999999874
No 75
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=42.79 E-value=86 Score=31.34 Aligned_cols=86 Identities=10% Similarity=0.095 Sum_probs=53.9
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHH
Q 003783 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (795)
Q Consensus 276 ~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNG 355 (795)
++.+.+.||+ .... .-...++ +.++..+++.|+.+.+..+.......+..+.+.. ..+|+||+++.+..- +.+..
T Consensus 10 ~~~~~Igvi~-~~~~-~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~~-~~~~~ 84 (289)
T 3k9c_A 10 ASSRLLGVVF-ELQQ-PFHGDLV-EQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMR-ERCEAAILLGTRFDT-DELGA 84 (289)
T ss_dssp ---CEEEEEE-ETTC-HHHHHHH-HHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTT-TTEEEEEEETCCCCH-HHHHH
T ss_pred CCCCEEEEEE-ecCC-chHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHh-CCCCEEEEECCCCCH-HHHHH
Confidence 4567888888 3322 1122333 5677888999999988887765444555666543 458999999987764 55555
Q ss_pred HHcCCCcccCCCccEEEee
Q 003783 356 LLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 356 L~~r~d~~~a~~iPLGIIP 374 (795)
+.. ++|+-++-
T Consensus 85 ~~~--------~iPvV~i~ 95 (289)
T 3k9c_A 85 LAD--------RVPALVVA 95 (289)
T ss_dssp HHT--------TSCEEEES
T ss_pred HHc--------CCCEEEEc
Confidence 532 36766653
No 76
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=42.79 E-value=55 Score=32.92 Aligned_cols=89 Identities=11% Similarity=0.094 Sum_probs=54.3
Q ss_pred CCCCeEEEEEcCCC---CCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHH
Q 003783 276 KSPPKMLVILNPRS---GRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEV 352 (795)
Q Consensus 276 ~r~krllVIvNP~S---G~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEV 352 (795)
++.+.+.||+.... ...-...++ ..++..+++.|+.+.+..+.......++.+.+.. ..+|+||+++.+..- +.
T Consensus 4 ~~s~~Igvi~~~~~~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~-~~vdGiIi~~~~~~~-~~ 80 (294)
T 3qk7_A 4 GRTDAIALAYPSRPRVLNNSTFLEMI-SWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVET-RRVDALIVAHTQPED-FR 80 (294)
T ss_dssp -CCCEEEEEEESCSGGGSCHHHHHHH-HHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHH-TCCSEEEECSCCSSC-HH
T ss_pred CccceEEEEecCCCccccChhHHHHH-HHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHc-CCCCEEEEeCCCCCh-HH
Confidence 35667888775211 111112233 4677788899999988888754444555555543 358999999887543 56
Q ss_pred HHHHHcCCCcccCCCccEEEee
Q 003783 353 LNGLLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 353 vNGL~~r~d~~~a~~iPLGIIP 374 (795)
+..|... ++|+-++-
T Consensus 81 ~~~l~~~-------~iPvV~~~ 95 (294)
T 3qk7_A 81 LQYLQKQ-------NFPFLALG 95 (294)
T ss_dssp HHHHHHT-------TCCEEEES
T ss_pred HHHHHhC-------CCCEEEEC
Confidence 6666554 47766653
No 77
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=42.53 E-value=67 Score=30.22 Aligned_cols=88 Identities=16% Similarity=0.164 Sum_probs=52.4
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcC--chHHH--HHH
Q 003783 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGG--DGIIN--EVL 353 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGG--DGTln--EVv 353 (795)
.++++|||=-.. |...++. +.|...|...|++++++......+..++...+. .+|.||+..- .|.+. .++
T Consensus 4 ~~kv~IvY~S~~--GnT~~iA-~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~---~~d~ii~Gspty~g~~p~~~~l 77 (159)
T 3fni_A 4 ETSIGVFYVSEY--GYSDRLA-QAIINGITKTGVGVDVVDLGAAVDLQELRELVG---RCTGLVIGMSPAASAASIQGAL 77 (159)
T ss_dssp CCEEEEEECTTS--TTHHHHH-HHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHH---TEEEEEEECCBTTSHHHHHHHH
T ss_pred CCEEEEEEECCC--hHHHHHH-HHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHH---hCCEEEEEcCcCCCCccHHHHH
Confidence 467899985554 4555555 578888888999888776654424556666554 2577776531 13344 455
Q ss_pred HHHHcCCCcccCCCccEEEeec
Q 003783 354 NGLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 354 NGL~~r~d~~~a~~iPLGIIP~ 375 (795)
..|.... ....+++++-.
T Consensus 78 ~~l~~~~----~~~k~va~fgs 95 (159)
T 3fni_A 78 STILGSV----NEKQAVGIFET 95 (159)
T ss_dssp HHHHHHC----CTTSEEEEECC
T ss_pred HHHHhhc----ccCCEEEEEEc
Confidence 5543321 12467777743
No 78
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=42.21 E-value=1.4e+02 Score=29.49 Aligned_cols=85 Identities=13% Similarity=0.189 Sum_probs=57.2
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC---CcchHHHHHHHhhhcCCCC-CeEEEcCchHHHHHH
Q 003783 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT---SAGHAKNLASTVDISSCPD-GIICVGGDGIINEVL 353 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~---~~ghA~ela~~l~~~~~~D-~IVvvGGDGTlnEVv 353 (795)
..++.||. |......+. ++....|+..|++|++.+.. .++...++++++... +.+ .|+++|+.+-|--|+
T Consensus 12 ~~~V~Iim----GS~SD~~v~-~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~-g~~ViIa~AG~aa~Lpgvv 85 (174)
T 3kuu_A 12 GVKIAIVM----GSKSDWATM-QFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEAN-GLHVIIAGNGGAAHLPGML 85 (174)
T ss_dssp CCCEEEEE----SSGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTT-TCSEEEEEEESSCCHHHHH
T ss_pred CCcEEEEE----CcHHHHHHH-HHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhC-CCcEEEEECChhhhhHHHH
Confidence 34677775 444444445 46677999999999988753 345566777766543 345 567889999999999
Q ss_pred HHHHcCCCcccCCCccEEEeecCC
Q 003783 354 NGLLSRGNQKEGISIPIGIIPAGS 377 (795)
Q Consensus 354 NGL~~r~d~~~a~~iPLGIIP~GT 377 (795)
-++.. .|+--+|.-+
T Consensus 86 A~~t~---------~PVIgVP~~~ 100 (174)
T 3kuu_A 86 AAKTL---------VPVLGVPVQS 100 (174)
T ss_dssp HHTCS---------SCEEEEEECC
T ss_pred HhccC---------CCEEEeeCCC
Confidence 99753 4555555533
No 79
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=41.72 E-value=89 Score=30.46 Aligned_cols=85 Identities=16% Similarity=0.207 Sum_probs=57.0
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC---CcchHHHHHHHhhhcCCCC-CeEEEcCchHHHHHHH
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT---SAGHAKNLASTVDISSCPD-GIICVGGDGIINEVLN 354 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~---~~ghA~ela~~l~~~~~~D-~IVvvGGDGTlnEVvN 354 (795)
+++.||. |......+. ++....|+..|++|++.+.. .++...++++++...+ .+ .|+++||.+-|--|+-
T Consensus 4 ~~V~Iim----gs~SD~~v~-~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g-~~ViIa~AG~aa~LpgvvA 77 (163)
T 3ors_A 4 MKVAVIM----GSSSDWKIM-QESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERG-INIIIAGAGGAAHLPGMVA 77 (163)
T ss_dssp CCEEEEE----SCGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTT-CCEEEEEEESSCCHHHHHH
T ss_pred CeEEEEE----CcHHHHHHH-HHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCC-CcEEEEECCchhhhHHHHH
Confidence 4466665 433344445 46677899999999988753 2355566777665432 45 5678899999999999
Q ss_pred HHHcCCCcccCCCccEEEeecCCc
Q 003783 355 GLLSRGNQKEGISIPIGIIPAGSD 378 (795)
Q Consensus 355 GL~~r~d~~~a~~iPLGIIP~GTG 378 (795)
++.. .|+--+|.-++
T Consensus 78 ~~t~---------~PVIgVP~~~~ 92 (163)
T 3ors_A 78 SLTT---------LPVIGVPIETK 92 (163)
T ss_dssp HHCS---------SCEEEEEECCT
T ss_pred hccC---------CCEEEeeCCCC
Confidence 9853 46655565554
No 80
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=41.22 E-value=1.2e+02 Score=31.01 Aligned_cols=88 Identities=17% Similarity=0.196 Sum_probs=50.4
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003783 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 276 ~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
++.+++.||+.-.. ..-...++ +.++..+++.|+.+.+..+.... ...++.+.+. ...+|+||+++.+.+- +.+.
T Consensus 58 ~~~~~Ig~i~~~~~-~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~-~~~~ 133 (332)
T 2hsg_A 58 KKTTTVGVIIPDIS-NIFYAELA-RGIEDIATMYKYNIILSNSDQNQDKELHLLNNML-GKQVDGIIFMSGNVTE-EHVE 133 (332)
T ss_dssp C-CCEEEEEEC--C-CSHHHHHH-HHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHTS-CCSSCCEEECCSSCCH-HHHH
T ss_pred CCCCEEEEEeCCCC-CcHHHHHH-HHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHH-hCCCcEEEEecCCCCH-HHHH
Confidence 35567777774322 22222333 46777888899988776654322 2233455553 3458999999877653 5555
Q ss_pred HHHcCCCcccCCCccEEEee
Q 003783 355 GLLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 355 GL~~r~d~~~a~~iPLGIIP 374 (795)
.|... ++|+-++-
T Consensus 134 ~l~~~-------~iPvV~~~ 146 (332)
T 2hsg_A 134 ELKKS-------PVPVVLAA 146 (332)
T ss_dssp HHTTS-------SSCEEEES
T ss_pred HHHhC-------CCCEEEEc
Confidence 55332 57876663
No 81
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=40.83 E-value=35 Score=33.04 Aligned_cols=96 Identities=15% Similarity=0.194 Sum_probs=52.9
Q ss_pred cCCCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc-----hHH-HH-----HHHhhhcCCCCCeEE
Q 003783 274 RCKSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-----HAK-NL-----ASTVDISSCPDGIIC 342 (795)
Q Consensus 274 ~~~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g-----hA~-el-----a~~l~~~~~~D~IVv 342 (795)
...++++++||+-|..- ...+. .+...|+.+|++++++-.+... +.. .+ ..+++.. .+|.||+
T Consensus 19 ~~~~~~kV~ill~~g~~---~~e~~--~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~-~~D~liv 92 (193)
T 1oi4_A 19 KAGLSKKIAVLITDEFE---DSEFT--SPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPA-EFDALLL 92 (193)
T ss_dssp TTTCCCEEEEECCTTBC---THHHH--HHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGG-GCSEEEE
T ss_pred hhccCCEEEEEECCCCC---HHHHH--HHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcc-cCCEEEE
Confidence 44567899999886221 22222 3456889999988877544311 000 00 0111111 3799999
Q ss_pred EcCchHH--------HHHHHHHHcCCCcccCCCccEEEeecCCcchhhh
Q 003783 343 VGGDGII--------NEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVW 383 (795)
Q Consensus 343 vGGDGTl--------nEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfAr 383 (795)
.||-|.- .+.+.....+ ..+|+-|=.|.. .||+
T Consensus 93 pGG~~~~~l~~~~~l~~~l~~~~~~-------gk~i~aIC~G~~-lLa~ 133 (193)
T 1oi4_A 93 PGGHSPDYLRGDNRFVTFTRDFVNS-------GKPVFAICHGPQ-LLIS 133 (193)
T ss_dssp CCBTHHHHHTTSHHHHHHHHHHHHT-------TCCEEEETTTHH-HHHH
T ss_pred CCCcCHHHhhhCHHHHHHHHHHHHc-------CCEEEEECHHHH-HHHH
Confidence 9997652 1222222222 467888877764 5554
No 82
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=40.76 E-value=78 Score=32.91 Aligned_cols=62 Identities=16% Similarity=0.199 Sum_probs=39.1
Q ss_pred ccccCCCCCeEEEEEcCCC------CCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhh
Q 003783 271 LIFRCKSPPKMLVILNPRS------GRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVD 332 (795)
Q Consensus 271 ~~~~~~r~krllVIvNP~S------G~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~ 332 (795)
.|....+++++.+|||-.. ....+...=.+.++.+|+..|++++++.=-...+..+..+++.
T Consensus 24 ~Y~m~~~~rg~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~ 91 (272)
T 1m72_A 24 YYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTA 91 (272)
T ss_dssp BCCCCSSEEEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHH
T ss_pred cccCCCCCCCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEecCcCHHHHHHHHHHHH
Confidence 3444456678888887542 1122222233678899999999998876555556666666654
No 83
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=40.55 E-value=94 Score=32.20 Aligned_cols=61 Identities=15% Similarity=0.053 Sum_probs=38.4
Q ss_pred cccCCCCCeEEEEEcCCCC-------CCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhh
Q 003783 272 IFRCKSPPKMLVILNPRSG-------RGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVD 332 (795)
Q Consensus 272 ~~~~~r~krllVIvNP~SG-------~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~ 332 (795)
|....+++.+.+|||-..= ...+...=.+.++.+|+..|++++++.=-...+..+..+++.
T Consensus 14 Y~m~~~~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~ 81 (277)
T 1nw9_B 14 YILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVEVKGDLTAKKMVLALLELA 81 (277)
T ss_dssp CCCCCSSCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTEEEEEEESCCHHHHHHHHHHHH
T ss_pred eeCCCCcccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 4444577888888876531 122223333678899999999988776555555555555543
No 84
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=40.43 E-value=33 Score=31.56 Aligned_cols=21 Identities=10% Similarity=0.256 Sum_probs=18.8
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003783 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
+.|.|.+++.+++++|+++|+
T Consensus 100 ~~~~f~A~s~~e~~~Wi~ai~ 120 (130)
T 1v88_A 100 SYLIIRATSESDGRCWMDALE 120 (130)
T ss_dssp SCCEEECSSHHHHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHH
Confidence 458899999999999999994
No 85
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=40.33 E-value=47 Score=29.04 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=19.9
Q ss_pred EeEEEEecCCHHHHHHHHHhhh
Q 003783 217 RKDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 217 ~~~~~f~~~~~~~a~~W~~~~~ 238 (795)
.++|.|.+++.+++++|+++|+
T Consensus 95 ~r~~~l~a~s~~e~~~Wi~al~ 116 (127)
T 1fgy_A 95 HVVYRISAPSPEEKEEWMKSIK 116 (127)
T ss_dssp CSEEEEECSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCHHHHHHHHHHHH
Confidence 4689999999999999999995
No 86
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=40.11 E-value=82 Score=29.79 Aligned_cols=61 Identities=10% Similarity=0.076 Sum_probs=39.1
Q ss_pred cccCCCCCeEEEEEcCCC-------CCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhh
Q 003783 272 IFRCKSPPKMLVILNPRS-------GRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVD 332 (795)
Q Consensus 272 ~~~~~r~krllVIvNP~S-------G~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~ 332 (795)
|....+++.+.+|+|-.. ....+...=.+.++.+|+.-|++++++.=-...+..+..+++.
T Consensus 9 Y~m~~~~rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~ 76 (146)
T 2dko_A 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVS 76 (146)
T ss_dssp CCCCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHH
Confidence 444446677888887641 1223333333678899999999998887666666666665554
No 87
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=39.71 E-value=53 Score=32.16 Aligned_cols=86 Identities=12% Similarity=0.142 Sum_probs=52.3
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHH
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLNGLL 357 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~ 357 (795)
+.+.||+.-... .-...++ +.++..+++.|+.+.+..+.... ...++.+.+.. ..+|+||+.+.+..-.+.+..|.
T Consensus 3 ~~Igvi~~~~~~-~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~~~~~~~~~~ 79 (272)
T 3o74_A 3 RTLGFILPDLEN-PSYARIA-KQLEQGARARGYQLLIASSDDQPDSERQLQQLFRA-RRCDALFVASCLPPEDDSYRELQ 79 (272)
T ss_dssp CEEEEEESCTTC-HHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECCCCCSSCCHHHHHH
T ss_pred eEEEEEeCCCcC-hhHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH-cCCCEEEEecCccccHHHHHHHH
Confidence 556777654322 1122333 56777888999998887765422 23344555533 35899999998844356666665
Q ss_pred cCCCcccCCCccEEEee
Q 003783 358 SRGNQKEGISIPIGIIP 374 (795)
Q Consensus 358 ~r~d~~~a~~iPLGIIP 374 (795)
.. ++|+-++-
T Consensus 80 ~~-------~iPvV~~~ 89 (272)
T 3o74_A 80 DK-------GLPVIAID 89 (272)
T ss_dssp HT-------TCCEEEES
T ss_pred Hc-------CCCEEEEc
Confidence 54 47776653
No 88
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=39.58 E-value=1.2e+02 Score=30.89 Aligned_cols=87 Identities=10% Similarity=0.087 Sum_probs=49.3
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHc-CCeEEEEEeCCc-chHHHHHHHhhhcCCCCCeEEEcCchH-HHHHH
Q 003783 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLA-GFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGI-INEVL 353 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~a-Gi~~~v~~T~~~-ghA~ela~~l~~~~~~D~IVvvGGDGT-lnEVv 353 (795)
+..++.|++.. ...-...++ ..++..+++. |+++.+..+... ....+..+.+.. ..+|+||+++.+.. +.+.+
T Consensus 5 ~~~~Igvi~~~--~~~~~~~~~-~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~~~~ 80 (325)
T 2x7x_A 5 PHFRIGVAQCS--DDSWRHKMN-DEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMD-EGVDLLIISANEAAPMTPIV 80 (325)
T ss_dssp -CCEEEEEESC--CSHHHHHHH-HHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECCSSHHHHHHHH
T ss_pred CCeEEEEEecC--CCHHHHHHH-HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHH-cCCCEEEEeCCCHHHHHHHH
Confidence 55677777743 211111222 3456667777 888776655432 222344555543 35899999988864 35666
Q ss_pred HHHHcCCCcccCCCccEEEee
Q 003783 354 NGLLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 354 NGL~~r~d~~~a~~iPLGIIP 374 (795)
..+... ++|+-++-
T Consensus 81 ~~~~~~-------~iPvV~~~ 94 (325)
T 2x7x_A 81 EEAYQK-------GIPVILVD 94 (325)
T ss_dssp HHHHHT-------TCCEEEES
T ss_pred HHHHHC-------CCeEEEeC
Confidence 666543 47876663
No 89
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=39.29 E-value=71 Score=31.99 Aligned_cols=89 Identities=13% Similarity=0.143 Sum_probs=52.5
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcch--HHHHHHHhhhcCCCCCeEEEcCchH-HHHHH
Q 003783 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGH--AKNLASTVDISSCPDGIICVGGDGI-INEVL 353 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~gh--A~ela~~l~~~~~~D~IVvvGGDGT-lnEVv 353 (795)
+.+++.+|+... ...-...++ +.++..+++.|+.+.++.....+. ..++.+.+... .+|+||+.+.|.. +.+.+
T Consensus 3 ~~~~I~~i~~~~-~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~-~vdgiIi~~~~~~~~~~~~ 79 (305)
T 3g1w_A 3 LNETYMMITFQS-GMDYWKRCL-KGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAK-NPAGIAISAIDPVELTDTI 79 (305)
T ss_dssp --CEEEEEESST-TSTHHHHHH-HHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHH-CCSEEEECCSSTTTTHHHH
T ss_pred CCceEEEEEccC-CChHHHHHH-HHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHh-CCCEEEEcCCCHHHHHHHH
Confidence 346666666543 322223333 567788889999887743332222 23344444333 4899999998875 45677
Q ss_pred HHHHcCCCcccCCCccEEEeec
Q 003783 354 NGLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 354 NGL~~r~d~~~a~~iPLGIIP~ 375 (795)
..+... .+|+-++-.
T Consensus 80 ~~~~~~-------~iPvV~~~~ 94 (305)
T 3g1w_A 80 NKAVDA-------GIPIVLFDS 94 (305)
T ss_dssp HHHHHT-------TCCEEEESS
T ss_pred HHHHHC-------CCcEEEECC
Confidence 777654 578776644
No 90
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=39.28 E-value=71 Score=32.12 Aligned_cols=44 Identities=11% Similarity=0.003 Sum_probs=26.4
Q ss_pred CCCCeEEEcCchHHH-----HHHHHHHcCCCcccCCCccEEEeecCCcchhhh
Q 003783 336 CPDGIICVGGDGIIN-----EVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVW 383 (795)
Q Consensus 336 ~~D~IVvvGGDGTln-----EVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfAr 383 (795)
.||+||+.||-|... +.+..++.+-. ....+|+-|=.|.. .||.
T Consensus 98 ~~D~livpGG~~~~~~l~~~~~l~~~l~~~~---~~gk~vaaIC~G~~-~La~ 146 (243)
T 1rw7_A 98 DYQIFFASAGHGTLFDYPKAKDLQDIASEIY---ANGGVVAAVCHGPA-IFDG 146 (243)
T ss_dssp GEEEEEECCSTTHHHHGGGCHHHHHHHHHHH---HTTCEEEEETTGGG-GGTT
T ss_pred hCcEEEECCCCCchhhcccCHHHHHHHHHHH---HcCCEEEEECCCHH-HHHh
Confidence 379999999988632 22222222110 12468888888876 5664
No 91
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=39.19 E-value=1.3e+02 Score=30.24 Aligned_cols=88 Identities=13% Similarity=0.140 Sum_probs=52.4
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003783 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 276 ~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
++.+.+.||+.-.+. .-...++ ..++..+++.|+.+.+..+.... ...++.+.+.. ..+|+||+++.+.+-.+.+.
T Consensus 13 ~~s~~Igvi~~~~~~-~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~~~~~~ 89 (303)
T 3kke_A 13 SRSGTIGLIVPDVNN-AVFADMF-SGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSE-GRVDGVLLQRREDFDDDMLA 89 (303)
T ss_dssp ----CEEEEESCTTS-TTHHHHH-HHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHS-CSSSEEEECCCTTCCHHHHH
T ss_pred CCCCEEEEEeCCCcC-hHHHHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh-CCCcEEEEecCCCCcHHHHH
Confidence 355678887754332 2223344 56788899999998887766432 23445555543 45899999998876332566
Q ss_pred HHHcCCCcccCCCccEEEee
Q 003783 355 GLLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 355 GL~~r~d~~~a~~iPLGIIP 374 (795)
.|.. ++|+-++-
T Consensus 90 ~l~~--------~iPvV~i~ 101 (303)
T 3kke_A 90 AVLE--------GVPAVTIN 101 (303)
T ss_dssp HHHT--------TSCEEEES
T ss_pred HHhC--------CCCEEEEC
Confidence 6543 36766553
No 92
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=38.90 E-value=99 Score=30.64 Aligned_cols=86 Identities=10% Similarity=0.086 Sum_probs=49.4
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-chHHHHHHHhhhcCCCCCeEEEcCchH-HHHHHHHH
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGI-INEVLNGL 356 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~-ghA~ela~~l~~~~~~D~IVvvGGDGT-lnEVvNGL 356 (795)
+++.||+. .....-...++ +-++..+++.|+++.+..+... ....++.+.+.. ..+|+||+++.+.. +.+.+..+
T Consensus 3 ~~Ig~i~~-~~~~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~~~~~~~~~ 79 (290)
T 2fn9_A 3 GKMAIVIS-TLNNPWFVVLA-ETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIA-AGYDAIIFNPTDADGSIANVKRA 79 (290)
T ss_dssp CEEEEEES-CSSSHHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECCSCTTTTHHHHHHH
T ss_pred eEEEEEeC-CCCChHHHHHH-HHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHH-cCCCEEEEecCChHHHHHHHHHH
Confidence 45666663 32221112233 4567788889998877665432 222344555543 35899999987754 34566666
Q ss_pred HcCCCcccCCCccEEEee
Q 003783 357 LSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 357 ~~r~d~~~a~~iPLGIIP 374 (795)
... ++|+-++-
T Consensus 80 ~~~-------~iPvV~~~ 90 (290)
T 2fn9_A 80 KEA-------GIPVFCVD 90 (290)
T ss_dssp HHT-------TCCEEEES
T ss_pred HHC-------CCeEEEEe
Confidence 543 47776653
No 93
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=38.89 E-value=1.2e+02 Score=31.43 Aligned_cols=112 Identities=13% Similarity=0.100 Sum_probs=62.6
Q ss_pred cccCCCCCeEEEEEcCCC--------------CCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhc--C
Q 003783 272 IFRCKSPPKMLVILNPRS--------------GRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDIS--S 335 (795)
Q Consensus 272 ~~~~~r~krllVIvNP~S--------------G~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~--~ 335 (795)
|....+++.+.+|||-.. ....+...=.+.++.+|+..|++++++.=-...+..+..+++... .
T Consensus 10 Y~m~~~~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~~h~ 89 (271)
T 3h11_B 10 YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQLMDHS 89 (271)
T ss_dssp CCCCSSSCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHSCCT
T ss_pred CCCCCCCCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhcCC
Confidence 444456778888887521 112222222367889999999998887655555555555554332 2
Q ss_pred CCCCeE-----------EEcCchH---HHHHHHHHHcCCCcccCCCccEEEeecCCcchhhh
Q 003783 336 CPDGII-----------CVGGDGI---INEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVW 383 (795)
Q Consensus 336 ~~D~IV-----------vvGGDGT---lnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfAr 383 (795)
.+|.+| +.|=||. |.++.+-+-...-..-..++-|-||-+=-||.+..
T Consensus 90 ~~d~~v~~ilSHG~~g~i~g~D~~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~~~ 151 (271)
T 3h11_B 90 NMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQACQGDNYQK 151 (271)
T ss_dssp TCSCEEEEEESCEETTEEECTTSCEEEHHHHHGGGSTTTCGGGTTSCEEEEEESCCSSBCC-
T ss_pred CCCEEEEEEEcCCcCCEEEecCCCeecHHHHHHHhhhccChhhcCCccEEEEeccCCCcccC
Confidence 356443 2455663 55665544322111112245688888877777654
No 94
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=38.77 E-value=74 Score=33.88 Aligned_cols=112 Identities=11% Similarity=0.051 Sum_probs=56.4
Q ss_pred cccCCC-CCeEEEEEcCCC-----CCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcC---CCCCeE-
Q 003783 272 IFRCKS-PPKMLVILNPRS-----GRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISS---CPDGII- 341 (795)
Q Consensus 272 ~~~~~r-~krllVIvNP~S-----G~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~---~~D~IV- 341 (795)
|....+ ++++.||||-.. ....+...=.+.++.+|+..|++++++.=-...+..+.++++.... .+|.+|
T Consensus 53 Y~m~~~~~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~~h~~~~D~~vv 132 (316)
T 2fp3_A 53 YKMQSRFNRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTIFPYGNVNQDQFFKLLTMVTSSSYVQNTECFVM 132 (316)
T ss_dssp CCCCCSSCSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEEEEECSCCHHHHHHHHHHHHTSHHHHTCSCEEE
T ss_pred ccCCCCCCCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEccCCCHHHHHHHHHHHHHHhhcCCCCEEEE
Confidence 554455 788888887552 2233333333678899999999887765444444455444442211 245332
Q ss_pred EE--------------cCchH---HHHHHHHHHcCCCcccCCCccEEEeecCCcchhhh
Q 003783 342 CV--------------GGDGI---INEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVW 383 (795)
Q Consensus 342 vv--------------GGDGT---lnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfAr 383 (795)
++ |=||. |.++++-+-...-..-..++-|-||-+=-||.+..
T Consensus 133 ~ilSHG~~~~g~g~i~g~D~~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~d~ 191 (316)
T 2fp3_A 133 VLMTHGNSVEGKEKVEFRDGSVVDMQKIKDHFQTAKCPYLVNKPKVLMFPFARGDEYDL 191 (316)
T ss_dssp EEESCEECCTTCCEEECTTSCEEEHHHHHHTTSTTTCGGGTTSCEEEEESCC-------
T ss_pred EEccCCCccCCCCEEEeecCcEEeHHHHHHHhccccChhhcCCceEEEEecCCCCcccC
Confidence 21 22553 55555544322111112245688888877777754
No 95
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=38.51 E-value=84 Score=31.13 Aligned_cols=88 Identities=11% Similarity=0.183 Sum_probs=51.5
Q ss_pred CCCCeEEEEEcCC----CCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchH-HHHHHHhhhcCCCCCeEEEcCchHHH
Q 003783 276 KSPPKMLVILNPR----SGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHA-KNLASTVDISSCPDGIICVGGDGIIN 350 (795)
Q Consensus 276 ~r~krllVIvNP~----SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA-~ela~~l~~~~~~D~IVvvGGDGTln 350 (795)
++.+++.||+... ....-...++ +.++..+++.|+.+.+..+...... .++.+.+. ...+|+||+++.+.. .
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~vdgiIi~~~~~~-~ 82 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVI-RGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQ-GRQIGGIILLYSREN-D 82 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHH-HHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHH-TTCCCEEEESCCBTT-C
T ss_pred CCCCEEEEEecCCccccccCHHHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHH-cCCCCEEEEeCCCCC-h
Confidence 3566777776541 2222222333 5677788899988876655443222 33444443 345899999988765 3
Q ss_pred HHHHHHHcCCCcccCCCccEEEe
Q 003783 351 EVLNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 351 EVvNGL~~r~d~~~a~~iPLGII 373 (795)
+.+..|... ++|+-++
T Consensus 83 ~~~~~l~~~-------~iPvV~~ 98 (292)
T 3k4h_A 83 RIIQYLHEQ-------NFPFVLI 98 (292)
T ss_dssp HHHHHHHHT-------TCCEEEE
T ss_pred HHHHHHHHC-------CCCEEEE
Confidence 566666554 5777665
No 96
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=38.49 E-value=99 Score=30.47 Aligned_cols=85 Identities=15% Similarity=0.166 Sum_probs=58.3
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC---CcchHHHHHHHhhhcCCCC-CeEEEcCchHHHHHHH
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT---SAGHAKNLASTVDISSCPD-GIICVGGDGIINEVLN 354 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~---~~ghA~ela~~l~~~~~~D-~IVvvGGDGTlnEVvN 354 (795)
.++.||. |......+. +++...|+..|++|++.+.. .++...++++++...+ .+ .|+++||.+-|--|+-
T Consensus 8 ~~V~Iim----gS~SD~~v~-~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g-~~ViIa~AG~aa~LpgvvA 81 (174)
T 3lp6_A 8 PRVGVIM----GSDSDWPVM-ADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARG-LEVIIAGAGGAAHLPGMVA 81 (174)
T ss_dssp CSEEEEE----SCGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHT-CCEEEEEEESSCCHHHHHH
T ss_pred CeEEEEE----CcHHhHHHH-HHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCC-CCEEEEecCchhhhHHHHH
Confidence 4577775 444444555 46777999999999988753 2456677777765433 45 5678899999999999
Q ss_pred HHHcCCCcccCCCccEEEeecCCc
Q 003783 355 GLLSRGNQKEGISIPIGIIPAGSD 378 (795)
Q Consensus 355 GL~~r~d~~~a~~iPLGIIP~GTG 378 (795)
++.. .|+--+|.-++
T Consensus 82 ~~t~---------~PVIgVP~~~~ 96 (174)
T 3lp6_A 82 AATP---------LPVIGVPVPLG 96 (174)
T ss_dssp HHCS---------SCEEEEEECCS
T ss_pred hccC---------CCEEEeeCCCC
Confidence 9853 46655666544
No 97
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=38.45 E-value=1e+02 Score=32.86 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=38.2
Q ss_pred cccCCCCCeEEEEEcCCC------CCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhh
Q 003783 272 IFRCKSPPKMLVILNPRS------GRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVD 332 (795)
Q Consensus 272 ~~~~~r~krllVIvNP~S------G~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~ 332 (795)
|....+++++.+|||-.. ....+...=.+.++.+|+..|++++++.=-...+..+.++++.
T Consensus 53 Y~m~~~~rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~ 119 (310)
T 2nn3_C 53 YNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTA 119 (310)
T ss_dssp CCCCSSBCCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHH
T ss_pred ccCCCCCcCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHH
Confidence 444456678888887431 1122222233678899999999998876555555556555553
No 98
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=38.42 E-value=1.1e+02 Score=30.32 Aligned_cols=85 Identities=15% Similarity=0.282 Sum_probs=58.0
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC---CcchHHHHHHHhhhcCCCC-CeEEEcCchHHHHHHH
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT---SAGHAKNLASTVDISSCPD-GIICVGGDGIINEVLN 354 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~---~~ghA~ela~~l~~~~~~D-~IVvvGGDGTlnEVvN 354 (795)
+.+.||. |......+. +++...|+..|++|++.+.. .++...++++++... +.+ .|+++||.+-|--|+-
T Consensus 14 ~~V~Iim----GS~SD~~v~-~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~-g~~ViIa~AG~aa~LpgvvA 87 (183)
T 1o4v_A 14 PRVGIIM----GSDSDLPVM-KQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEER-GIEVIIAGAGGAAHLPGMVA 87 (183)
T ss_dssp CEEEEEE----SCGGGHHHH-HHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTT-TCCEEEEEEESSCCHHHHHH
T ss_pred CeEEEEe----ccHHHHHHH-HHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhC-CCcEEEEecCcccccHHHHH
Confidence 3455554 444444555 46777999999999988763 345567777776533 245 5678899999999999
Q ss_pred HHHcCCCcccCCCccEEEeecCCc
Q 003783 355 GLLSRGNQKEGISIPIGIIPAGSD 378 (795)
Q Consensus 355 GL~~r~d~~~a~~iPLGIIP~GTG 378 (795)
++.. .|+--+|.-++
T Consensus 88 ~~t~---------~PVIgVP~~~~ 102 (183)
T 1o4v_A 88 SITH---------LPVIGVPVKTS 102 (183)
T ss_dssp HHCS---------SCEEEEEECCT
T ss_pred hccC---------CCEEEeeCCCC
Confidence 9843 56666676554
No 99
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=38.27 E-value=1.2e+02 Score=29.54 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=32.5
Q ss_pred CeEEEEEcCCC----CCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHh
Q 003783 279 PKMLVILNPRS----GRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTV 331 (795)
Q Consensus 279 krllVIvNP~S----G~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l 331 (795)
+++.+|||-.. ....+...=.+.++.+|+..|++++++.=-...+..+.++++
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~f 99 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTTELEAF 99 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHH
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHH
Confidence 55666665443 122232333367889999999999877655555555555554
No 100
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=38.08 E-value=1.3e+02 Score=29.64 Aligned_cols=88 Identities=14% Similarity=0.153 Sum_probs=47.8
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-chHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHH
Q 003783 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~-ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNG 355 (795)
+.+++.||+. .....-...+. +.++..+++.|+.+.+..+... ....++.+.+.. ..+|+||+.+.+.+ .+++..
T Consensus 6 ~~~~Ig~i~~-~~~~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgii~~~~~~~-~~~~~~ 81 (289)
T 1dbq_A 6 HTKSIGLLAT-SSEAAYFAEII-EAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQ-KRVDGLLVMCSEYP-EPLLAM 81 (289)
T ss_dssp --CEEEEEES-CTTSHHHHHHH-HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEEECSCCC-HHHHHH
T ss_pred CCCEEEEEeC-CCCChHHHHHH-HHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHh-CCCCEEEEEeccCC-HHHHHH
Confidence 5566777763 32211112222 4567778888998877655432 222344555543 35899999988764 234444
Q ss_pred HHcCCCcccCCCccEEEee
Q 003783 356 LLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 356 L~~r~d~~~a~~iPLGIIP 374 (795)
|... .++|+-.+-
T Consensus 82 l~~~------~~iPvV~~~ 94 (289)
T 1dbq_A 82 LEEY------RHIPMVVMD 94 (289)
T ss_dssp HHHT------TTSCEEEEE
T ss_pred HHhc------cCCCEEEEc
Confidence 4321 147766653
No 101
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.04 E-value=35 Score=31.99 Aligned_cols=46 Identities=26% Similarity=0.413 Sum_probs=32.2
Q ss_pred ccccCCcceEEEEecCCc----c---eEEEEEeecCCCCCccccccCCeeeEeEEEEecCCHHHHHHHHHhh
Q 003783 173 SHVLPLDDIVSVSYNNGL----R---HFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTTEEAIQWVGGF 237 (795)
Q Consensus 173 ~~~l~l~d~~~~~~~~~~----~---~~~i~~y~~~k~~~g~~~~~~~~r~~~~~~f~~~~~~~a~~W~~~~ 237 (795)
.++|.|+|||.|.--.+- + -|.|+ . ..++|.|.+++ +|...|..+|
T Consensus 64 rrVIrLsdCisV~~~~~e~~~pk~~~aF~l~--T----------------~er~~~laAe~-~E~~~Wi~~i 116 (127)
T 2d9w_A 64 RKVIRLSDCLRVAEAGGEASSPRDTSAFFLE--T----------------KERLYLLAAPA-AERGDWVQAI 116 (127)
T ss_dssp EEEECGGGEEEEEECCSCSSSCSSCEEEEEE--E----------------SSCEEEEEECH-HHHHHHHHHH
T ss_pred ceEEEhhhCCeEecccCccCCCCcceEEEEE--e----------------CCcEEEEEeCc-HHHHHHHHHH
Confidence 469999999998844332 2 23333 1 12568899985 5899999998
No 102
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=37.54 E-value=67 Score=32.03 Aligned_cols=87 Identities=15% Similarity=0.159 Sum_probs=42.8
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEE-EeCCc-chHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003783 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVV-KTTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~-~T~~~-ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
+.+++.||+. .....-...++ ..++..+++.|+++.+. .+... ....++.+.+.. ..+|+||+++.+.+ .+.+.
T Consensus 7 ~~~~Ig~i~~-~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~-~~~~~ 82 (290)
T 3clk_A 7 SSNVIAAVVS-SVRTNFAQQIL-DGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIE-RPVMGILLLSIALT-DDNLQ 82 (290)
T ss_dssp -CCEEEEECC-CCSSSHHHHHH-HHHHHHHHTTTCEEEEEC----------CHHHHHHS-SCCSEEEEESCC-----CHH
T ss_pred cCCEEEEEeC-CCCChHHHHHH-HHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHh-cCCCEEEEecccCC-HHHHH
Confidence 5566777663 32222122333 46677888889887766 44322 222334555543 35899999988765 35555
Q ss_pred HHHcCCCcccCCCccEEEee
Q 003783 355 GLLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 355 GL~~r~d~~~a~~iPLGIIP 374 (795)
.|... ++|+-++-
T Consensus 83 ~l~~~-------~iPvV~~~ 95 (290)
T 3clk_A 83 LLQSS-------DVPYCFLS 95 (290)
T ss_dssp HHHCC---------CEEEES
T ss_pred HHHhC-------CCCEEEEc
Confidence 55432 57776653
No 103
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=36.88 E-value=1.3e+02 Score=31.20 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=51.7
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003783 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 276 ~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
++.+.+.||+.-.. ..-...++ ..++..+++.|+.+.+..+.... ...++.+.+.. ..+|+||+++.+.+- +.+.
T Consensus 68 ~~~~~Igvi~~~~~-~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdGiI~~~~~~~~-~~~~ 143 (355)
T 3e3m_A 68 KRSGFVGLLLPSLN-NLHFAQTA-QSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLR-RRPEAMVLSYDGHTE-QTIR 143 (355)
T ss_dssp ---CEEEEEESCSB-CHHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-TCCSEEEEECSCCCH-HHHH
T ss_pred CCCCEEEEEeCCCC-chHHHHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh-CCCCEEEEeCCCCCH-HHHH
Confidence 34566777764322 11122333 46777888999998877765432 23344555533 358999999887663 5556
Q ss_pred HHHcCCCcccCCCccEEEe
Q 003783 355 GLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 355 GL~~r~d~~~a~~iPLGII 373 (795)
.|... ++|+-++
T Consensus 144 ~l~~~-------~iPvV~i 155 (355)
T 3e3m_A 144 LLQRA-------SIPIVEI 155 (355)
T ss_dssp HHHHC-------CSCEEEE
T ss_pred HHHhC-------CCCEEEE
Confidence 66544 5787776
No 104
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=36.87 E-value=1.1e+02 Score=29.66 Aligned_cols=82 Identities=12% Similarity=0.229 Sum_probs=54.7
Q ss_pred eEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC---CcchHHHHHHHhhhcCCCC-CeEEEcCchHHHHHHHH
Q 003783 280 KMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT---SAGHAKNLASTVDISSCPD-GIICVGGDGIINEVLNG 355 (795)
Q Consensus 280 rllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~---~~ghA~ela~~l~~~~~~D-~IVvvGGDGTlnEVvNG 355 (795)
++.||. |......+. ++....|+..|++|++.+.. .++...++++++.....++ .|+++|+.+-|--|+-+
T Consensus 4 ~V~Iim----gs~SD~~v~-~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~LpgvvA~ 78 (159)
T 3rg8_A 4 LVIILM----GSSSDMGHA-EKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGFVDG 78 (159)
T ss_dssp EEEEEE----SSGGGHHHH-HHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHHHHH
T ss_pred eEEEEE----CcHHHHHHH-HHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHHHHh
Confidence 455554 433344445 46777999999999988753 2455667777665322345 56788999999999999
Q ss_pred HHcCCCcccCCCccEEEeec
Q 003783 356 LLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 356 L~~r~d~~~a~~iPLGIIP~ 375 (795)
+.. .|+--+|.
T Consensus 79 ~t~---------~PVIgVP~ 89 (159)
T 3rg8_A 79 FVK---------GATIACPP 89 (159)
T ss_dssp HSS---------SCEEECCC
T ss_pred ccC---------CCEEEeeC
Confidence 853 46655564
No 105
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=36.34 E-value=1.1e+02 Score=31.24 Aligned_cols=87 Identities=15% Similarity=0.180 Sum_probs=49.8
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003783 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 276 ~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
++.+.+.||+.-. ...-...++ ..++..+++.|+.+.+..+.... ...++.+.+.. ..+|+||+++.+.. .+.+.
T Consensus 61 ~~~~~Ig~i~~~~-~~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~-~~~~~ 136 (332)
T 2o20_A 61 KRTTTVGVILPTI-TSTYFAAIT-RGVDDIASMYKYNMILANSDNDVEKEEKVLETFLS-KQVDGIVYMGSSLD-EKIRT 136 (332)
T ss_dssp -CCCEEEEEESCT-TCHHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECSSCCC-HHHHH
T ss_pred CCCCEEEEEeCCC-CCcHHHHHH-HHHHHHHHHcCCEEEEEECCCChHHHHHHHHHHHh-CCCCEEEEeCCCCC-HHHHH
Confidence 3556777777432 211112333 45677888899988777655432 22344555543 35899999987654 34555
Q ss_pred HHHcCCCcccCCCccEEEe
Q 003783 355 GLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 355 GL~~r~d~~~a~~iPLGII 373 (795)
.|... ++|+-++
T Consensus 137 ~l~~~-------~iPvV~~ 148 (332)
T 2o20_A 137 SLKNS-------RTPVVLV 148 (332)
T ss_dssp HHHHH-------CCCEEEE
T ss_pred HHHhC-------CCCEEEE
Confidence 55432 4776665
No 106
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=35.78 E-value=89 Score=31.11 Aligned_cols=104 Identities=15% Similarity=0.135 Sum_probs=53.2
Q ss_pred CCCeEEEEEcCCC-CCC-CchhhHHHhHHHHHHHcCCeEEEEEeCCc---------------chHHHHHH---------H
Q 003783 277 SPPKMLVILNPRS-GRG-RSSKVFHDIVEPIFKLAGFKLEVVKTTSA---------------GHAKNLAS---------T 330 (795)
Q Consensus 277 r~krllVIvNP~S-G~G-ka~ki~~~~I~plL~~aGi~~~v~~T~~~---------------ghA~ela~---------~ 330 (795)
.++|++||+-..+ ..| ....+. .....|+.+|++++++-.+.. .....+.. .
T Consensus 5 ~m~kv~ill~~~~~~~g~~~~E~~--~p~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~ 82 (232)
T 1vhq_A 5 TMKKIGVILSGCGVYDGSEIHEAV--LTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRP 82 (232)
T ss_dssp -CCEEEEECCSBSTTTSBCHHHHH--HHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEE
T ss_pred cCCeEEEEEccCCCCCCeeHHHHH--HHHHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCCC
Confidence 3578888876111 011 222222 233578999999988764321 11111111 1
Q ss_pred hhh--cCCCCCeEEEcCchHH---------------HHHHHHHHcCCCcccCCCccEEEeecCCcchhhhhhc
Q 003783 331 VDI--SSCPDGIICVGGDGII---------------NEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWTVL 386 (795)
Q Consensus 331 l~~--~~~~D~IVvvGGDGTl---------------nEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArsll 386 (795)
++. ...||+||+.||-|.. ++-+..++.+-. ....+|+-|=.|.. .||+.+-
T Consensus 83 l~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~gk~vaaIC~G~~-~La~aL~ 151 (232)
T 1vhq_A 83 LAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMH---QAGKPLGFMCIAPA-MLPKIFD 151 (232)
T ss_dssp GGGCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHH---HTTCCEEEETTGGG-GHHHHCS
T ss_pred HHHcCcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHH---HcCCEEEEECHHHH-HHHHHhc
Confidence 111 1247999999998872 232222222100 11468888888876 5666543
No 107
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=35.75 E-value=1.4e+02 Score=28.64 Aligned_cols=68 Identities=15% Similarity=0.161 Sum_probs=37.6
Q ss_pred CCCeEEEEE--cCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE--eCCcchHHHHHHHhhhcCCCCCeEEEcCch
Q 003783 277 SPPKMLVIL--NPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK--TTSAGHAKNLASTVDISSCPDGIICVGGDG 347 (795)
Q Consensus 277 r~krllVIv--NP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~--T~~~ghA~ela~~l~~~~~~D~IVvvGGDG 347 (795)
+++|+.||. |. .| +-...-...+..+|++.|+++..+. .+..+...+..+++.....+|.||+.||=|
T Consensus 9 ~~~~v~Ii~tGdE-~g--~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g 80 (172)
T 1mkz_A 9 IPTRIAILTVSNR-RG--EEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTG 80 (172)
T ss_dssp CCCEEEEEEECSS-CC--GGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCS
T ss_pred CCCEEEEEEEeCC-CC--cccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCC
Confidence 445666665 33 23 2222223467889999998865433 233333333333332221379999999965
No 108
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=35.74 E-value=38 Score=34.03 Aligned_cols=57 Identities=18% Similarity=0.156 Sum_probs=36.4
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchH
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGI 348 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGT 348 (795)
+|++||.++..-.- ..+.+.|++.|++++++.....+. +...+ . .+|+||+.||-++
T Consensus 1 m~i~vi~h~~~e~~-------g~~~~~l~~~g~~~~~~~~~~~~~---~p~~~--~-~~d~lii~GGp~~ 57 (236)
T 3l7n_A 1 MRIHFILHETFEAP-------GAYLAWAALRGHDVSMTKVYRYEK---LPKDI--D-DFDMLILMGGPQS 57 (236)
T ss_dssp CEEEEEECCTTSCC-------HHHHHHHHHTTCEEEEEEGGGTCC---CCSCG--G-GCSEEEECCCSSC
T ss_pred CeEEEEeCCCCCCc-------hHHHHHHHHCCCeEEEEeeeCCCC---CCCCc--c-ccCEEEECCCCCC
Confidence 47888887655311 235567888999988776532211 11112 2 3799999999887
No 109
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=35.61 E-value=57 Score=29.75 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=32.0
Q ss_pred ccCCcceEEEEecCC--cceEEEEEeecCCCCCccccccCCeeeEeEEEEecCCHHHHHHHHHhhh
Q 003783 175 VLPLDDIVSVSYNNG--LRHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 175 ~l~l~d~~~~~~~~~--~~~~~i~~y~~~k~~~g~~~~~~~~r~~~~~~f~~~~~~~a~~W~~~~~ 238 (795)
.|.|.+|..+..... ...|.|.. + -.++|.|.+++.+++.+|+.+|.
T Consensus 72 ~I~L~~~~~~~~~~~~~~~~F~i~~-~----------------~~r~~~l~A~s~~e~~~Wi~al~ 120 (150)
T 1wg7_A 72 SIFLDSCMGVVQNNKVRRFAFELKM-Q----------------DKSSYLLAADSEVEMEEWITILN 120 (150)
T ss_dssp EECTTTCCEECCCCSSCTTEEEEEC-S----------------SSCEEEEECSSHHHHHHHHHHHH
T ss_pred EEecccCEEEecCCCCCceEEEEEe-C----------------CCcEEEEEeCCHHHHHHHHHHHH
Confidence 477777766654331 23355542 0 02579999999999999999995
No 110
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=35.08 E-value=74 Score=32.11 Aligned_cols=75 Identities=15% Similarity=0.137 Sum_probs=50.0
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHH
Q 003783 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLL 357 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~ 357 (795)
-+|+.+|.+|... .+...+ +..+..++++|+++.........+..+.++++. ..+|+|++ +.|.+.-.++..|.
T Consensus 133 ~~~I~~i~~~~~~--~~~~r~-~g~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~--~~~dai~~-~~D~~a~g~~~~l~ 206 (295)
T 3lft_A 133 VKTIGALYSSSED--NSKTQV-EEFKAYAEKAGLTVETFAVPSTNEIASTVTVMT--SKVDAIWV-PIDNTIASGFPTVV 206 (295)
T ss_dssp CCEEEEEEETTCH--HHHHHH-HHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHT--TTCSEEEE-CSCHHHHHTHHHHH
T ss_pred CcEEEEEeCCCCc--chHHHH-HHHHHHHHHcCCEEEEEecCCHHHHHHHHHHHH--hcCCEEEE-CCchhHHHHHHHHH
Confidence 4789999998542 122333 456778899999886655555566667777664 24676655 67888777777665
Q ss_pred c
Q 003783 358 S 358 (795)
Q Consensus 358 ~ 358 (795)
.
T Consensus 207 ~ 207 (295)
T 3lft_A 207 S 207 (295)
T ss_dssp H
T ss_pred H
Confidence 5
No 111
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=34.95 E-value=1.8e+02 Score=29.85 Aligned_cols=87 Identities=14% Similarity=0.206 Sum_probs=52.1
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003783 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 276 ~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
++.+.+.||+......- ...++ ..++..+++.|+.+.+..+.... ...++.+.+.. ..+|+||+++-+.+- +.+.
T Consensus 60 ~~~~~Igvi~~~~~~~~-~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdGiIi~~~~~~~-~~~~ 135 (339)
T 3h5o_A 60 AKSRTVLVLIPSLANTV-FLETL-TGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQ-HRPDGVLITGLSHAE-PFER 135 (339)
T ss_dssp ---CEEEEEESCSTTCT-THHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHT-TCCSEEEEECSCCCT-THHH
T ss_pred CCCCEEEEEeCCCCCHH-HHHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHc-CCCCEEEEeCCCCCH-HHHH
Confidence 35567777775433322 23444 56788899999998777665432 23344555533 458999999876543 4455
Q ss_pred HHHcCCCcccCCCccEEEe
Q 003783 355 GLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 355 GL~~r~d~~~a~~iPLGII 373 (795)
.|... ++|+-++
T Consensus 136 ~l~~~-------~iPvV~~ 147 (339)
T 3h5o_A 136 ILSQH-------ALPVVYM 147 (339)
T ss_dssp HHHHT-------TCCEEEE
T ss_pred HHhcC-------CCCEEEE
Confidence 55443 5777766
No 112
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=34.64 E-value=18 Score=39.37 Aligned_cols=79 Identities=20% Similarity=0.259 Sum_probs=46.4
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC--C--cchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT--S--AGHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~--~--~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
+|++||..+.. ...+ +.+...|+ .+.++.-- . .....+.++.+.. ...|.||.+|| |++-.+.-
T Consensus 38 ~rvliVtd~~~-----~~~~-~~v~~~L~----~~~~f~~v~~~p~~~~v~~~~~~~~~-~~~D~IIavGG-Gs~iD~aK 105 (364)
T 3iv7_A 38 AKVMVIAGERE-----MSIA-HKVASEIE----VAIWHDEVVMHVPIEVAERARAVATD-NEIDLLVCVGG-GSTIGLAK 105 (364)
T ss_dssp SSEEEECCGGG-----HHHH-HHHTTTSC----CSEEECCCCTTCBHHHHHHHHHHHHH-TTCCEEEEEES-HHHHHHHH
T ss_pred CEEEEEECCCH-----HHHH-HHHHHHcC----CCEEEcceecCCCHHHHHHHHHHHHh-cCCCEEEEeCC-cHHHHHHH
Confidence 67888877642 1233 34544454 22222111 1 2233444444433 34799999999 88888888
Q ss_pred HHHcCCCcccCCCccEEEeec
Q 003783 355 GLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 355 GL~~r~d~~~a~~iPLGIIP~ 375 (795)
.+... ..+|+..||.
T Consensus 106 ~iA~~------~~~P~i~IPT 120 (364)
T 3iv7_A 106 AIAMT------TALPIVAIPT 120 (364)
T ss_dssp HHHHH------HCCCEEEEEC
T ss_pred HHHhc------cCCCEEEEcC
Confidence 77653 2589999997
No 113
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=34.58 E-value=37 Score=34.08 Aligned_cols=59 Identities=14% Similarity=0.289 Sum_probs=39.0
Q ss_pred eeecceeeeccc--------ccCCcceEEEEecCC-cceEEEEEeecCCCCCccccccCCeeeEeEEEEecCCHHHHHHH
Q 003783 163 KLTSKALVWGSH--------VLPLDDIVSVSYNNG-LRHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTTEEAIQW 233 (795)
Q Consensus 163 ~~~~~~~~~~~~--------~l~l~d~~~~~~~~~-~~~~~i~~y~~~k~~~g~~~~~~~~r~~~~~~f~~~~~~~a~~W 233 (795)
.|+...|.|.+. .|.|.++..+....+ ...|.|.. ..++|.|.+++.+++++|
T Consensus 85 vL~~~~L~Yyk~~~~~~~~g~I~L~~~~~v~~~~~k~~~F~I~t------------------~~r~~~l~A~s~~e~~~W 146 (228)
T 3tfm_A 85 VLRQSKLMYFENDSEEKLKGTVEVRSAKEIIDNTNKENGIDIIM------------------ADRTFHLIAESPEDASQW 146 (228)
T ss_dssp EECSSEEEEESSTTCCSEEEEEEGGGCSEEEEETTTTSEEEEEC------------------SSCEEEEECSSHHHHHHH
T ss_pred EEeCCEEEEEeCCCCcceeEEEEcCCCEEeccCCCCCcEEEEEc------------------CCcEEEEEcCCHHHHHHH
Confidence 355556666543 567777766553333 33466642 125799999999999999
Q ss_pred HHhhhc
Q 003783 234 VGGFAD 239 (795)
Q Consensus 234 ~~~~~~ 239 (795)
+++|..
T Consensus 147 v~aL~~ 152 (228)
T 3tfm_A 147 FSVLSQ 152 (228)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999953
No 114
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=34.57 E-value=1.3e+02 Score=29.81 Aligned_cols=85 Identities=14% Similarity=0.192 Sum_probs=58.4
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC---CcchHHHHHHHhhhcCCCC-CeEEEcCchHHHHHHH
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT---SAGHAKNLASTVDISSCPD-GIICVGGDGIINEVLN 354 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~---~~ghA~ela~~l~~~~~~D-~IVvvGGDGTlnEVvN 354 (795)
.++.||. |......+. ++....|+..|++|++.+.. .++...++++++... +.+ .|+++||.+-|--|+-
T Consensus 22 ~~V~Iim----GS~SD~~v~-~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~-g~~ViIa~AG~aa~LpgvvA 95 (182)
T 1u11_A 22 PVVGIIM----GSQSDWETM-RHADALLTELEIPHETLIVSAHRTPDRLADYARTAAER-GLNVIIAGAGGAAHLPGMCA 95 (182)
T ss_dssp CSEEEEE----SSGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTT-TCCEEEEEEESSCCHHHHHH
T ss_pred CEEEEEE----CcHHHHHHH-HHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhC-CCcEEEEecCchhhhHHHHH
Confidence 4677776 444444555 46677899999999988753 345566677766433 245 5678899999999999
Q ss_pred HHHcCCCcccCCCccEEEeecCCc
Q 003783 355 GLLSRGNQKEGISIPIGIIPAGSD 378 (795)
Q Consensus 355 GL~~r~d~~~a~~iPLGIIP~GTG 378 (795)
++.. .|+--+|.-++
T Consensus 96 ~~t~---------~PVIgVP~~~~ 110 (182)
T 1u11_A 96 AWTR---------LPVLGVPVESR 110 (182)
T ss_dssp HHCS---------SCEEEEEECCT
T ss_pred hccC---------CCEEEeeCCCC
Confidence 9853 56666666544
No 115
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=34.51 E-value=11 Score=44.41 Aligned_cols=90 Identities=17% Similarity=0.196 Sum_probs=54.2
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcC-ch---------
Q 003783 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGG-DG--------- 347 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGG-DG--------- 347 (795)
.+|+.||+.+.-|-.. .+. ..+...|+++|+.++++-.+....+-....+++. ..||+||+.|| .|
T Consensus 529 g~kVaIL~a~~dGfe~-~E~--~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s-~~fDAVvlPGG~~g~~~~~~~~~ 604 (688)
T 2iuf_A 529 GLKVGLLASVNKPASI-AQG--AKLQVALSSVGVDVVVVAERXANNVDETYSASDA-VQFDAVVVADGAEGLFGADSFTV 604 (688)
T ss_dssp TCEEEEECCTTCHHHH-HHH--HHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCG-GGCSEEEECTTCGGGCCTTTTTC
T ss_pred CCEEEEEecCCCCCcH-HHH--HHHHHHHHHCCCEEEEEeccCCcccccchhcCCc-cccCeEEecCCCccccccccccc
Confidence 4789999865334222 122 3567799999999988876543211001111111 23899999999 34
Q ss_pred ---------------HHHHHHHHHHcCCCcccCCCccEEEeecCCc
Q 003783 348 ---------------IINEVLNGLLSRGNQKEGISIPIGIIPAGSD 378 (795)
Q Consensus 348 ---------------TlnEVvNGL~~r~d~~~a~~iPLGIIP~GTG 378 (795)
.+-+++...+.. .-|||.|-.|..
T Consensus 605 ~~~~~~~~~~L~~~~~~~~~v~~~~~~-------gKpIaAIc~ap~ 643 (688)
T 2iuf_A 605 EPSAGSGASTLYPAGRPLNILLDAFRF-------GKTVGALGSGSD 643 (688)
T ss_dssp CCCTTSCCCSSSCTTHHHHHHHHHHHH-------TCEEEEEGGGHH
T ss_pred ccccccchhhcccChHHHHHHHHHHHc-------CCEEEEECchHH
Confidence 355566555544 468998887764
No 116
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=34.44 E-value=46 Score=35.73 Aligned_cols=51 Identities=22% Similarity=0.252 Sum_probs=37.4
Q ss_pred HHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeecCCcchhhhh
Q 003783 325 KNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (795)
Q Consensus 325 ~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArs 384 (795)
.++++.+... ..|.+|++|||||+.-+ +.|.+. .+|+--||.==-||+.-+
T Consensus 84 ~~~~~~l~~~-~Id~LvvIGGdgS~~~a-~~L~~~-------~i~vvgiPkTIDNDl~~t 134 (320)
T 1pfk_A 84 AVAIENLKKR-GIDALVVIGGDGSYMGA-MRLTEM-------GFPCIGLPGTIDNDIKGT 134 (320)
T ss_dssp HHHHHHHHHT-TCCEEEEEECHHHHHHH-HHHHHT-------TCCEEEEEBCTTCCCTTC
T ss_pred HHHHHHHHHc-CCCEEEEECCCchHHHH-HHHHhh-------CCCEEEEeccccCCCCCC
Confidence 3444444332 47999999999998765 556553 589999999889998853
No 117
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=34.31 E-value=1e+02 Score=30.29 Aligned_cols=85 Identities=15% Similarity=0.129 Sum_probs=57.3
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC---CcchHHHHHHHhhhcCCCC-CeEEEcCchHHHHHHH
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT---SAGHAKNLASTVDISSCPD-GIICVGGDGIINEVLN 354 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~---~~ghA~ela~~l~~~~~~D-~IVvvGGDGTlnEVvN 354 (795)
+++.||. |......+. +++...|+..|++|++.+.. .++...++++++... +.+ .|+++||.+-|--|+-
T Consensus 12 ~~V~Iim----GS~SD~~v~-~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~-g~~ViIa~AG~aa~LpgvvA 85 (170)
T 1xmp_A 12 SLVGVIM----GSTSDWETM-KYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARER-GLKVIIAGAGGAAHLPGMVA 85 (170)
T ss_dssp CSEEEEE----SSGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTT-TCCEEEEEEESSCCHHHHHH
T ss_pred CcEEEEE----CcHHHHHHH-HHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhC-CCcEEEEECCchhhhHHHHH
Confidence 4466665 444444555 46677899999999988763 245566777766433 245 5678899999999998
Q ss_pred HHHcCCCcccCCCccEEEeecCCc
Q 003783 355 GLLSRGNQKEGISIPIGIIPAGSD 378 (795)
Q Consensus 355 GL~~r~d~~~a~~iPLGIIP~GTG 378 (795)
++.. .|+--+|.-++
T Consensus 86 ~~t~---------~PVIgVP~~~~ 100 (170)
T 1xmp_A 86 AKTN---------LPVIGVPVQSK 100 (170)
T ss_dssp TTCC---------SCEEEEEECCT
T ss_pred hccC---------CCEEEeeCCCC
Confidence 8743 56666666544
No 118
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=34.23 E-value=69 Score=30.25 Aligned_cols=59 Identities=19% Similarity=0.359 Sum_probs=38.1
Q ss_pred eeeecceeeeccc--------ccCCcceEEEEe--cCC--cceEEEEEeecCCCCCccccccCCeeeEeEEEEecCCHHH
Q 003783 162 AKLTSKALVWGSH--------VLPLDDIVSVSY--NNG--LRHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTTEE 229 (795)
Q Consensus 162 ~~~~~~~~~~~~~--------~l~l~d~~~~~~--~~~--~~~~~i~~y~~~k~~~g~~~~~~~~r~~~~~~f~~~~~~~ 229 (795)
..|....|.|++. .|.|.++..+.. ..+ ...|+|.. . .++|.|.++|.++
T Consensus 39 FvLk~~~L~Yyk~~~d~~~~g~I~L~~~~~~~~~~~~~~~~~~F~I~t---------------~---~r~~~f~A~s~ee 100 (149)
T 1x1f_A 39 TELRGTTLFFYTDKKSIIYVDKLDIVDLTCLTEQNSTEKNCAKFTLVL---------------P---KEEVQLKTENTES 100 (149)
T ss_dssp EEEETTEEEEESCSSCSSCSEECCCSSCCEEEECCCTTSCCCEEEEEC---------------S---SCCEEEECSSHHH
T ss_pred EEEcCCEEEEEeCCCccccCcEEECCCceEEeeccCCCCcCcEEEEEc---------------C---CCEEEEEcCCHHH
Confidence 4466666776643 577777765532 111 22355541 0 1458899999999
Q ss_pred HHHHHHhhh
Q 003783 230 AIQWVGGFA 238 (795)
Q Consensus 230 a~~W~~~~~ 238 (795)
.+.|+.+|+
T Consensus 101 ~~eWi~aI~ 109 (149)
T 1x1f_A 101 GEEWRGFIL 109 (149)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999994
No 119
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=34.08 E-value=93 Score=33.84 Aligned_cols=88 Identities=10% Similarity=0.098 Sum_probs=48.7
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc----chHHHHHHHhhhcC--CCCCeEEEcCchHHHHH
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA----GHAKNLASTVDISS--CPDGIICVGGDGIINEV 352 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~----ghA~ela~~l~~~~--~~D~IVvvGGDGTlnEV 352 (795)
++++||..+.-- .. .+...|+.+++++.++.--.+ ....++++.+...+ ..|.||.+|| |.+-.+
T Consensus 54 ~~~liVtd~~~~---~~-----~l~~~L~~~g~~~~~f~~v~~~pt~~~v~~~~~~~~~~~~~~~D~IIavGG-GS~iD~ 124 (375)
T 3rf7_A 54 DFVVFLVDDVHQ---HK-----PLAARVPNKAHDLVIYVNVDDEPTTVQVDELTAQVKAFNTKLPVSVVGLGG-GSTMDL 124 (375)
T ss_dssp CCEEEEEEGGGT---TS-----HHHHHSCCCTTSEEEEECCSSCCBHHHHHHHHHHHHHHCSSCCSEEEEEES-HHHHHH
T ss_pred CeEEEEECchhh---hh-----HHHHHHHhcCCeEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCCEEEEeCC-cHHHHH
Confidence 678888876421 11 133456667888765532111 22233333332211 2699999999 777777
Q ss_pred HHHHHcCC---C-------c--ccCCCccEEEeec
Q 003783 353 LNGLLSRG---N-------Q--KEGISIPIGIIPA 375 (795)
Q Consensus 353 vNGL~~r~---d-------~--~~a~~iPLGIIP~ 375 (795)
.-.+...- . | .....+|+..||.
T Consensus 125 AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT 159 (375)
T 3rf7_A 125 AKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPT 159 (375)
T ss_dssp HHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEES
T ss_pred HHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcC
Confidence 76654321 0 0 0112589999996
No 120
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=33.60 E-value=1.7e+02 Score=29.04 Aligned_cols=86 Identities=9% Similarity=0.086 Sum_probs=50.4
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchH-HHHHHHHHH
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLL 357 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGT-lnEVvNGL~ 357 (795)
.++.||+.- ....-...++ +-++..+++.|+++.+..+.......+..+.+... .+|+||+++-|.. ...++..+.
T Consensus 3 ~~Ig~i~~~-~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~~~-~vdgiii~~~~~~~~~~~~~~~~ 79 (306)
T 8abp_A 3 LKLGFLVKQ-PEEPWFQTEW-KFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAAS-GAKGFVICTPDPKLGSAIVAKAR 79 (306)
T ss_dssp EEEEEEESC-TTSHHHHHHH-HHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHT-TCCEEEEECSCGGGHHHHHHHHH
T ss_pred eEEEEEeCC-CCchHHHHHH-HHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHHHHc-CCCEEEEeCCCchhhHHHHHHHH
Confidence 345666542 2221112233 45777888889888766654333334445555433 5899999998875 345566665
Q ss_pred cCCCcccCCCccEEEee
Q 003783 358 SRGNQKEGISIPIGIIP 374 (795)
Q Consensus 358 ~r~d~~~a~~iPLGIIP 374 (795)
.. ++|+-.+-
T Consensus 80 ~~-------~iPvV~~~ 89 (306)
T 8abp_A 80 GY-------DMKVIAVD 89 (306)
T ss_dssp HT-------TCEEEEES
T ss_pred HC-------CCcEEEeC
Confidence 54 57876664
No 121
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=33.47 E-value=1.8e+02 Score=28.88 Aligned_cols=68 Identities=10% Similarity=0.045 Sum_probs=43.1
Q ss_pred HhHHHHHHHcCC-eEEEEEeCCc-chHHHHHHHhhhcCCCCCeEEEcCchH-HHHHHHHHHcCCCcccCCCccEEEeec
Q 003783 300 DIVEPIFKLAGF-KLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 300 ~~I~plL~~aGi-~~~v~~T~~~-ghA~ela~~l~~~~~~D~IVvvGGDGT-lnEVvNGL~~r~d~~~a~~iPLGIIP~ 375 (795)
+.++..+++.|+ ++.+..+... ....++.+.+.. ..+|+||+.+.|.+ ..+++..+... ++|+-.+-.
T Consensus 22 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~vdgiii~~~~~~~~~~~~~~~~~~-------~iPvV~~~~ 92 (309)
T 2fvy_A 22 KAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLA-KGVKALAINLVDPAAAGTVIEKARGQ-------NVPVVFFNK 92 (309)
T ss_dssp HHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECCSSGGGHHHHHHHHHTT-------TCCEEEESS
T ss_pred HHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH-cCCCEEEEeCCCcchhHHHHHHHHHC-------CCcEEEecC
Confidence 456777888897 7766655432 222344555543 35899999998875 45667766543 578766643
No 122
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=33.47 E-value=1.4e+02 Score=30.12 Aligned_cols=88 Identities=11% Similarity=0.068 Sum_probs=53.8
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcch-HHHHHHHhhhcCCCCCeEEEcCchH-HHHHHHH
Q 003783 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGH-AKNLASTVDISSCPDGIICVGGDGI-INEVLNG 355 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~gh-A~ela~~l~~~~~~D~IVvvGGDGT-lnEVvNG 355 (795)
.+++.||+.-.+. .-...++ +.++..+++.|+++.+..+..... ..+..+.+... .+|+||+++-|.. ..+.+..
T Consensus 3 ~~~Igvi~~~~~~-~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~-~vdgiIi~~~~~~~~~~~~~~ 79 (330)
T 3uug_A 3 KGSVGIAMPTKSS-ARWIDDG-NNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTK-GVKVLVIASIDGTTLSDVLKQ 79 (330)
T ss_dssp CCEEEEEECCSSS-THHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHH-TCSEEEECCSSGGGGHHHHHH
T ss_pred CcEEEEEeCCCcc-hHHHHHH-HHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHc-CCCEEEEEcCCchhHHHHHHH
Confidence 3566776654332 2222333 567788899999988777554322 23344444333 4899999999864 4666777
Q ss_pred HHcCCCcccCCCccEEEeec
Q 003783 356 LLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 356 L~~r~d~~~a~~iPLGIIP~ 375 (795)
+... ++|+-.+-.
T Consensus 80 ~~~~-------giPvV~~~~ 92 (330)
T 3uug_A 80 AGEQ-------GIKVIAYDR 92 (330)
T ss_dssp HHHT-------TCEEEEESS
T ss_pred HHHC-------CCCEEEECC
Confidence 7654 578777643
No 123
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=32.66 E-value=1.6e+02 Score=28.01 Aligned_cols=68 Identities=13% Similarity=0.184 Sum_probs=37.8
Q ss_pred CCCeEEEEE--cCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe--CCcchHHHHHHHhhhcCCCCCeEEEcCch
Q 003783 277 SPPKMLVIL--NPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT--TSAGHAKNLASTVDISSCPDGIICVGGDG 347 (795)
Q Consensus 277 r~krllVIv--NP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T--~~~ghA~ela~~l~~~~~~D~IVvvGGDG 347 (795)
+++|+.||. |.- |. -...-...+..+|++.|+++..+.+ +..+...+..+++.....+|.||+.||=|
T Consensus 12 ~~~rv~Ii~tGdEl-g~--i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g 83 (169)
T 1y5e_A 12 KEVRCKIVTISDTR-TE--ETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTG 83 (169)
T ss_dssp CCCEEEEEEECSSC-CT--TTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCS
T ss_pred cCCEEEEEEEcCcc-Ce--eccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence 456676665 444 32 2222224678899999987654332 23223333333332211479999999965
No 124
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=32.51 E-value=68 Score=30.45 Aligned_cols=56 Identities=18% Similarity=0.242 Sum_probs=35.5
Q ss_pred hHHHHHHHcCCeEEEEEe--------CCcch---HHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcC
Q 003783 301 IVEPIFKLAGFKLEVVKT--------TSAGH---AKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSR 359 (795)
Q Consensus 301 ~I~plL~~aGi~~~v~~T--------~~~gh---A~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r 359 (795)
.....|...|+++..... +..-+ +.++...+ ..+|.+|++.|||=+..++..|.++
T Consensus 65 ~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a---~~~d~~vLvSgD~DF~plv~~lr~~ 131 (165)
T 2qip_A 65 QFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIA---PDVDRVILVSGDGDFSLLVERIQQR 131 (165)
T ss_dssp HHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHG---GGCSEEEEECCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhh---ccCCEEEEEECChhHHHHHHHHHHH
Confidence 344577888987653321 11111 12222222 3479999999999999999999763
No 125
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=32.48 E-value=1.6e+02 Score=28.39 Aligned_cols=58 Identities=17% Similarity=0.247 Sum_probs=37.6
Q ss_pred CCCCCeEEEEEcCCCC-------CCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhh
Q 003783 275 CKSPPKMLVILNPRSG-------RGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVD 332 (795)
Q Consensus 275 ~~r~krllVIvNP~SG-------~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~ 332 (795)
...++.+.+|||-..= ...+...=.+.++.+|+..|++++++.=-...+..+..+++.
T Consensus 29 ~~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~ 93 (167)
T 1pyo_A 29 QSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEMQEKLQNFA 93 (167)
T ss_dssp CCSSSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEEEEEESCCHHHHHHHHHHHH
T ss_pred CCCCceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHhh
Confidence 3467888888876521 123333334678899999999988876555555555555543
No 126
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=32.01 E-value=46 Score=35.67 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=37.0
Q ss_pred HHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeecCCcchhhhh
Q 003783 325 KNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (795)
Q Consensus 325 ~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArs 384 (795)
.++++.+... ..|.+|++|||||+.-+ +.|.+. .+|+--||.==-||+.-+
T Consensus 83 ~~~~~~l~~~-~Id~LvvIGGdgS~~~a-~~L~~~-------~i~vvgiPkTIDNDl~~t 133 (319)
T 1zxx_A 83 LAGIEQLKKH-GIDAVVVIGGDGSYHGA-LQLTRH-------GFNSIGLPGTIDNDIPYT 133 (319)
T ss_dssp HHHHHHHHHT-TCCEEEEEECHHHHHHH-HHHHHT-------TCCEEEEEEETTCCCTTC
T ss_pred HHHHHHHHHh-CCCEEEEECCchHHHHH-HHHHHh-------CCCEEEEeecccCCCCCC
Confidence 3444444332 47999999999998765 556543 589999999888998743
No 127
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=32.00 E-value=1.6e+02 Score=28.77 Aligned_cols=84 Identities=17% Similarity=0.189 Sum_probs=56.7
Q ss_pred eEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC---CcchHHHHHHHhhhcCCCC-CeEEEcCchHHHHHHHH
Q 003783 280 KMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT---SAGHAKNLASTVDISSCPD-GIICVGGDGIINEVLNG 355 (795)
Q Consensus 280 rllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~---~~ghA~ela~~l~~~~~~D-~IVvvGGDGTlnEVvNG 355 (795)
++.||. |......+. +++...|+..|+.|++.+.. .++...++++++...+ .+ .|+++||.+-|--|+-+
T Consensus 7 ~V~Iim----gS~SD~~v~-~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g-~~ViIa~AG~aa~LpgvvA~ 80 (166)
T 3oow_A 7 QVGVIM----GSKSDWSTM-KECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERG-LKVIIAGAGGAAHLPGMVAA 80 (166)
T ss_dssp EEEEEE----SSGGGHHHH-HHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTT-CCEEEEEECSSCCHHHHHHH
T ss_pred eEEEEE----CcHHhHHHH-HHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCC-CcEEEEECCcchhhHHHHHh
Confidence 566665 444444445 46777999999999988753 2345667777764332 45 56788999999999999
Q ss_pred HHcCCCcccCCCccEEEeecCCc
Q 003783 356 LLSRGNQKEGISIPIGIIPAGSD 378 (795)
Q Consensus 356 L~~r~d~~~a~~iPLGIIP~GTG 378 (795)
+.. .|+--+|.-++
T Consensus 81 ~t~---------~PVIgVP~~~~ 94 (166)
T 3oow_A 81 KTT---------LPVLGVPVKSS 94 (166)
T ss_dssp TCS---------SCEEEEECCCT
T ss_pred ccC---------CCEEEeecCcC
Confidence 743 56666666444
No 128
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=31.93 E-value=95 Score=30.86 Aligned_cols=86 Identities=14% Similarity=0.019 Sum_probs=51.4
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc---chHHHHHHHhhhcCCCCCeEEEcCchH-HHHH
Q 003783 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA---GHAKNLASTVDISSCPDGIICVGGDGI-INEV 352 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~---ghA~ela~~l~~~~~~D~IVvvGGDGT-lnEV 352 (795)
+.+++.||+.-.+.. -...+. +.++..+++.|+++.+..+... ....+..+.+... .+|+||+++.|.. +.+.
T Consensus 4 ~~~~Igvi~~~~~~~-~~~~~~-~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~vdgiii~~~~~~~~~~~ 80 (304)
T 3o1i_D 4 SDEKICAIYPHLKDS-YWLSVN-YGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQW-GANAIILGTVDPHAYEHN 80 (304)
T ss_dssp -CCEEEEEESCSCSH-HHHHHH-HHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHH-TCSEEEECCSSTTSSTTT
T ss_pred CCcEEEEEeCCCCCc-HHHHHH-HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHc-CCCEEEEeCCChhHHHHH
Confidence 567788887643221 112222 4567788888999888877642 2333445554333 4899999988765 2344
Q ss_pred HHHHHcCCCcccCCCccEEEe
Q 003783 353 LNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 353 vNGL~~r~d~~~a~~iPLGII 373 (795)
+..+. . ++|+-.+
T Consensus 81 ~~~~~-~-------~iPvV~~ 93 (304)
T 3o1i_D 81 LKSWV-G-------NTPVFAT 93 (304)
T ss_dssp HHHHT-T-------TSCEEEC
T ss_pred HHHHc-C-------CCCEEEe
Confidence 55554 3 5787666
No 129
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=31.83 E-value=27 Score=30.22 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=19.2
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003783 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
++|.|.+++.+++++|+++|+
T Consensus 87 r~~~l~a~s~~e~~~Wi~al~ 107 (112)
T 3aj4_A 87 KTISLCAESTDDCLAWKFTLQ 107 (112)
T ss_dssp CEEEEECSSHHHHHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHH
Confidence 569999999999999999985
No 130
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=31.78 E-value=63 Score=28.96 Aligned_cols=21 Identities=19% Similarity=0.442 Sum_probs=19.0
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003783 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
+.|.|.+++.+++++|+++|+
T Consensus 95 ~~~~~~A~s~ee~~~Wi~ai~ 115 (124)
T 2w2x_D 95 PPVEFATDKVEELFEWFQSIR 115 (124)
T ss_dssp CCEEEEECCCHHHHHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHHHH
Confidence 468999999999999999995
No 131
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=31.67 E-value=1.2e+02 Score=30.52 Aligned_cols=86 Identities=12% Similarity=0.071 Sum_probs=49.3
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-chHHHHHHHhhhcCCCCCeEEEcCchH-HHHHHHHH
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGI-INEVLNGL 356 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~-ghA~ela~~l~~~~~~D~IVvvGGDGT-lnEVvNGL 356 (795)
.++.|++ |..+..-...++ ..++..+++.|+.+.+..+... ....++.+.+... .+|+||+++.+.. +.+.+..+
T Consensus 3 ~~Ig~i~-~~~~~~~~~~~~-~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~-~vdgiIi~~~~~~~~~~~~~~~ 79 (306)
T 2vk2_A 3 LTVGFSQ-VGSESGWRAAET-NVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQ-GVDAIFIAPVVATGWEPVLKEA 79 (306)
T ss_dssp CEEEEEE-CCCCSHHHHHHH-HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHH-TCSEEEECCSSSSSCHHHHHHH
T ss_pred eEEEEEe-CCCCCHHHHHHH-HHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHc-CCCEEEEeCCChhhHHHHHHHH
Confidence 4455555 433322222222 4567788889998877765432 2223444554333 4899999988764 35666666
Q ss_pred HcCCCcccCCCccEEEee
Q 003783 357 LSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 357 ~~r~d~~~a~~iPLGIIP 374 (795)
... ++|+-++-
T Consensus 80 ~~~-------~iPvV~~~ 90 (306)
T 2vk2_A 80 KDA-------EIPVFLLD 90 (306)
T ss_dssp HHT-------TCCEEEES
T ss_pred HHC-------CCCEEEec
Confidence 543 47776653
No 132
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1
Probab=31.46 E-value=69 Score=29.33 Aligned_cols=48 Identities=23% Similarity=0.493 Sum_probs=34.9
Q ss_pred cccCCcceEEEEecCC-------------cceEEEEEeecCCCCCccccccCCeeeEeEEEEecCCHHHHHHHHHhh
Q 003783 174 HVLPLDDIVSVSYNNG-------------LRHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTTEEAIQWVGGF 237 (795)
Q Consensus 174 ~~l~l~d~~~~~~~~~-------------~~~~~i~~y~~~k~~~g~~~~~~~~r~~~~~~f~~~~~~~a~~W~~~~ 237 (795)
..|.|+||-.|..-.. ...|+|.+-. + .+++.|.|++.++|+.|++.|
T Consensus 56 ~~i~i~~I~eIr~G~~s~~~~~~~~~~~~~~~FsIiy~~---------------~-~k~LdlvA~s~~e~~~Wv~gL 116 (131)
T 1mai_A 56 QLFSIEDIQEVRMGHRTEGLEKFARDIPEDRCFSIVFKD---------------Q-RNTLDLIAPSPADAQHWVQGL 116 (131)
T ss_dssp TEEEGGGEEEEEESSCSHHHHHHCTTSCGGGEEEEEESS---------------S-CCCEEEECSSHHHHHHHHHHH
T ss_pred cEEEHhhhHHHHCCCCCHHHHhhhhcCCccceEEEEECC---------------C-CceEEEEeCCHHHHHHHHHHH
Confidence 4688999977775541 2346665221 1 478999999999999999998
No 133
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=31.25 E-value=1.2e+02 Score=30.70 Aligned_cols=78 Identities=13% Similarity=0.011 Sum_probs=46.8
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEE--EeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003783 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVV--KTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~--~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
..+|+.+|.. ... .+.... +.++..|+++|+++... ......+....+.++... .+|+|++++-|.....++.
T Consensus 134 g~~~ia~i~~-~~~--~~~~~~-~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~-~~dav~~~~~~~~a~~~~~ 208 (362)
T 3snr_A 134 NVKTVGYIGY-SDS--YGDLWF-NDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLVAA-NPDAILVGASGTAAALPQT 208 (362)
T ss_dssp TCCEEEEEEE-SSH--HHHHHH-HHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHH-CCSEEEEECCHHHHHHHHH
T ss_pred CCCEEEEEec-Cch--HHHHHH-HHHHHHHHHcCCEEEEEeecCCCCCCHHHHHHHHHhc-CCCEEEEecCcchHHHHHH
Confidence 3478888853 221 122333 46777899999875422 222223333444444332 4799998887888888888
Q ss_pred HHHcC
Q 003783 355 GLLSR 359 (795)
Q Consensus 355 GL~~r 359 (795)
.+.+.
T Consensus 209 ~~~~~ 213 (362)
T 3snr_A 209 TLRER 213 (362)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 88765
No 134
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=30.95 E-value=38 Score=40.03 Aligned_cols=88 Identities=15% Similarity=0.223 Sum_probs=53.1
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchH-HHHHHHhhhcCCCCCeEEEcCc-h-------
Q 003783 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHA-KNLASTVDISSCPDGIICVGGD-G------- 347 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA-~ela~~l~~~~~~D~IVvvGGD-G------- 347 (795)
..+|+.||+.. |.....++ ..+...|+++|+.++++-.+.. +. .....++.. ..||+||+.||- |
T Consensus 536 ~grKVaILvad--G~fE~~El--~~p~~aL~~aGa~V~vVsp~~g-~GvD~t~~~~~s-~~fDAVvlPGG~~~~~~~~~~ 609 (688)
T 3ej6_A 536 ATLRVGVLSTT--KGGSLDKA--KALKEQLEKDGLKVTVIAEYLA-SGVDQTYSAADA-TAFDAVVVAEGAERVFSGKGA 609 (688)
T ss_dssp TTCEEEEECCS--SSSHHHHH--HHHHHHHHHTTCEEEEEESSCC-TTCCEETTTCCG-GGCSEEEECTTCCTTTSTTTT
T ss_pred cCCEEEEEccC--CCccHHHH--HHHHHHHHHCCCEEEEEeCCCC-CCcccCcccCCh-hcCcEEEECCCcccccccccc
Confidence 45889999864 21222233 3567789999999998876543 22 000111111 237999999993 3
Q ss_pred --------HHHHHHHHHHcCCCcccCCCccEEEeecCC
Q 003783 348 --------IINEVLNGLLSRGNQKEGISIPIGIIPAGS 377 (795)
Q Consensus 348 --------TlnEVvNGL~~r~d~~~a~~iPLGIIP~GT 377 (795)
-+-+++...+.. .-|||.|-.|-
T Consensus 610 ~d~Lr~~~~a~~fV~e~~~h-------gKpIAAIchgp 640 (688)
T 3ej6_A 610 MSPLFPAGRPSQILTDGYRW-------GKPVAAVGSAK 640 (688)
T ss_dssp CCTTSCTTHHHHHHHHHHHT-------TCCEEEEGGGH
T ss_pred hhhhccCHHHHHHHHHHHHc-------CCEEEEeCccH
Confidence 345566666554 46888886654
No 135
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=30.80 E-value=1.2e+02 Score=30.93 Aligned_cols=88 Identities=6% Similarity=-0.074 Sum_probs=50.9
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCC--CCCeEEEcCchH-HHHH
Q 003783 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSC--PDGIICVGGDGI-INEV 352 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~--~D~IVvvGGDGT-lnEV 352 (795)
+.+++.||+.-. ...-...++ ..++..+++.|+++.+..+.... ...++.+.+.. .. +|+||+++.+.. +.+.
T Consensus 4 ~s~~Igvi~~~~-~~~~~~~~~-~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~-~~~~vdgiIi~~~~~~~~~~~ 80 (332)
T 2rjo_A 4 GQTTLACSFRSL-TNPYYTAFN-KGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQ-KTGGNLVLNVDPNDSADARVI 80 (332)
T ss_dssp CCCEEEEEESCT-TSHHHHHHH-HHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHH-HTTTCEEEEECCSSHHHHHHH
T ss_pred CccEEEEEecCC-CcHHHHHHH-HHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHH-CCCCCCEEEEeCCCHHHHHHH
Confidence 456777777432 211112222 45677888899998777654322 22334455433 35 799999988764 3456
Q ss_pred HHHHHcCCCcccCCCccEEEee
Q 003783 353 LNGLLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 353 vNGL~~r~d~~~a~~iPLGIIP 374 (795)
+..+... ++|+-.+-
T Consensus 81 ~~~~~~~-------~iPvV~~~ 95 (332)
T 2rjo_A 81 VEACSKA-------GAYVTTIW 95 (332)
T ss_dssp HHHHHHH-------TCEEEEES
T ss_pred HHHHHHC-------CCeEEEEC
Confidence 6665443 47776653
No 136
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=30.67 E-value=53 Score=33.06 Aligned_cols=89 Identities=12% Similarity=0.135 Sum_probs=50.5
Q ss_pred CCCCeEEEEEc----CCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcch-HHHHHHHhhhcCCCCCeEEEcCchHHH
Q 003783 276 KSPPKMLVILN----PRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGH-AKNLASTVDISSCPDGIICVGGDGIIN 350 (795)
Q Consensus 276 ~r~krllVIvN----P~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~gh-A~ela~~l~~~~~~D~IVvvGGDGTln 350 (795)
++.+.+.||+. |.....-...++ ..++..+++.|+.+.+..+..... ..++.+.+.. ..+|+||+++.+.+ .
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~f~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdGiI~~~~~~~-~ 81 (295)
T 3hcw_A 5 NQTYKIGLVLKGSEEPIRLNPFYINVL-LGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQ-RMVDAFILLYSKEN-D 81 (295)
T ss_dssp CCSCEEEEECSCCCHHHHSCHHHHHHH-HHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHT-TCCSEEEESCCCTT-C
T ss_pred CCCcEEEEEeecCCcccccChHHHHHH-HHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHh-CCcCEEEEcCcccC-h
Confidence 45667888773 111111112333 467778888898876665543222 2334444433 45899999987754 2
Q ss_pred HHHHHHHcCCCcccCCCccEEEee
Q 003783 351 EVLNGLLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 351 EVvNGL~~r~d~~~a~~iPLGIIP 374 (795)
+.+..|... ++|+-++-
T Consensus 82 ~~~~~l~~~-------~iPvV~i~ 98 (295)
T 3hcw_A 82 PIKQMLIDE-------SMPFIVIG 98 (295)
T ss_dssp HHHHHHHHT-------TCCEEEES
T ss_pred HHHHHHHhC-------CCCEEEEC
Confidence 555555543 47776653
No 137
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=30.45 E-value=99 Score=33.07 Aligned_cols=85 Identities=12% Similarity=0.074 Sum_probs=49.9
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe-C---CcchHHHHHHHhhhcC--CCCCeEEEcCchHHHH
Q 003783 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT-T---SAGHAKNLASTVDISS--CPDGIICVGGDGIINE 351 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T-~---~~ghA~ela~~l~~~~--~~D~IVvvGGDGTlnE 351 (795)
.+|++||.++... + +.+.+...|+ .++. .++.- + ......++.+.+...+ ..|.||++|| |.+..
T Consensus 28 ~~kvliVtd~~v~-----~-~~~~v~~~L~-~~~~-~~~~~ge~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gsv~D 98 (348)
T 1ujn_A 28 AGPAALLFDRRVE-----G-FAQEVAKALG-VRHL-LGLPGGEAAKSLEVYGKVLSWLAEKGLPRNATLLVVGG-GTLTD 98 (348)
T ss_dssp SSCEEEEEEGGGH-----H-HHHHHHHHHT-CCCE-EEECCSGGGSSHHHHHHHHHHHHHHTCCTTCEEEEEES-HHHHH
T ss_pred CCEEEEEECCcHH-----H-HHHHHHHHhc-cCeE-EEECCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEECC-cHHHH
Confidence 4789999986532 2 4456777776 5554 22221 1 1123344444332211 2489999998 78888
Q ss_pred HHHHHHcCCCcccCCCccEEEeec
Q 003783 352 VLNGLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 352 VvNGL~~r~d~~~a~~iPLGIIP~ 375 (795)
++-.+...- ...+|+..||.
T Consensus 99 ~ak~~A~~~----~rgip~i~IPT 118 (348)
T 1ujn_A 99 LGGFVAATY----LRGVAYLAFPT 118 (348)
T ss_dssp HHHHHHHHB----TTCCEEEEEEC
T ss_pred HHHHHHHHh----ccCCCEEEecC
Confidence 777765321 12689999995
No 138
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=30.01 E-value=37 Score=29.29 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.7
Q ss_pred EeEEEEecCCHHHHHHHHHhhh
Q 003783 217 RKDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 217 ~~~~~f~~~~~~~a~~W~~~~~ 238 (795)
.++|.|.+++.+++++|+++|.
T Consensus 76 ~r~~~l~A~s~~e~~~Wi~al~ 97 (107)
T 2cof_A 76 EELAKLEAKSSEEMGHWLGLLL 97 (107)
T ss_dssp EEEEEEECSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCHHHHHHHHHHHH
Confidence 3579999999999999999995
No 139
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=30.01 E-value=1.4e+02 Score=29.60 Aligned_cols=83 Identities=16% Similarity=0.138 Sum_probs=56.1
Q ss_pred eEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC---CcchHHHHHHHhhhcCCCC-CeEEEcCchHHHHHHHH
Q 003783 280 KMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT---SAGHAKNLASTVDISSCPD-GIICVGGDGIINEVLNG 355 (795)
Q Consensus 280 rllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~---~~ghA~ela~~l~~~~~~D-~IVvvGGDGTlnEVvNG 355 (795)
.+.||. |......+. +.....|++.|++|++.+.. .++...++++++...+ ++ .|.++||.+-|--++-+
T Consensus 24 ~V~Iim----GS~SD~~v~-~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g-~~ViIa~AG~aahLpGvvAa 97 (181)
T 4b4k_A 24 LVGVIM----GSTSDWETM-KYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERG-LKVIIAGAGGAAHLPGMVAA 97 (181)
T ss_dssp SEEEEE----SSGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTT-CCEEEEEECSSCCHHHHHHT
T ss_pred cEEEEE----CCHhHHHHH-HHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcC-ceEEEEeccccccchhhHHh
Confidence 366776 444445555 46677999999999887753 2345667777765433 45 46788999999999887
Q ss_pred HHcCCCcccCCCccEEEeecCC
Q 003783 356 LLSRGNQKEGISIPIGIIPAGS 377 (795)
Q Consensus 356 L~~r~d~~~a~~iPLGIIP~GT 377 (795)
+. .+|+-=+|.-+
T Consensus 98 ~T---------~~PVIGVPv~s 110 (181)
T 4b4k_A 98 KT---------NLPVIGVPVQS 110 (181)
T ss_dssp TC---------CSCEEEEECCC
T ss_pred cC---------CCCEEEEecCC
Confidence 63 35666667633
No 140
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=29.92 E-value=32 Score=36.69 Aligned_cols=71 Identities=17% Similarity=0.240 Sum_probs=40.8
Q ss_pred CCeEEEEEcCCCCCC-CchhhHHHhHHHHHHHcCCeEEEEEeCC------cc----hHHHHHHHhhhcCCCCCeEEE-cC
Q 003783 278 PPKMLVILNPRSGRG-RSSKVFHDIVEPIFKLAGFKLEVVKTTS------AG----HAKNLASTVDISSCPDGIICV-GG 345 (795)
Q Consensus 278 ~krllVIvNP~SG~G-ka~ki~~~~I~plL~~aGi~~~v~~T~~------~g----hA~ela~~l~~~~~~D~IVvv-GG 345 (795)
+-.-.-|+-|.++-+ .....++ .....|+..|+++.+-.+-. ++ .|.++.+.+.. ...++|+|+ ||
T Consensus 11 ~GD~I~ivaPSs~~~~~~~~~~~-~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~D-p~i~aI~~~rGG 88 (327)
T 4h1h_A 11 QGDEIRIIAPSRSIGIMADNQVE-IAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFND-SSVKAILTVIGG 88 (327)
T ss_dssp TTCEEEEECSSSCGGGSCHHHHH-HHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHC-TTEEEEEESCCC
T ss_pred CCCEEEEEeCCCCcCccCHHHHH-HHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhC-CCCCEEEEcCCc
Confidence 344566788888743 2333453 44568899998876543322 12 33444444432 335777765 99
Q ss_pred chHHH
Q 003783 346 DGIIN 350 (795)
Q Consensus 346 DGTln 350 (795)
+|+..
T Consensus 89 ~g~~r 93 (327)
T 4h1h_A 89 FNSNQ 93 (327)
T ss_dssp SCGGG
T ss_pred hhHHH
Confidence 99854
No 141
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=29.79 E-value=36 Score=28.90 Aligned_cols=21 Identities=14% Similarity=0.406 Sum_probs=19.4
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003783 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
++|.|.+++.++.++|+.+|.
T Consensus 69 r~~~l~a~s~~e~~~Wi~al~ 89 (103)
T 3rcp_A 69 QHFYMKAVNAAERQRWLVALG 89 (103)
T ss_dssp EEEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHH
Confidence 579999999999999999995
No 142
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=29.69 E-value=1.6e+02 Score=29.39 Aligned_cols=71 Identities=11% Similarity=0.046 Sum_probs=45.8
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCchH
Q 003783 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGI 348 (795)
Q Consensus 276 ~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDGT 348 (795)
++.+.+.||+.-....--...++ ..++..+++.|+.+.+..+.... ...++.+.+.. ..+|+||+++.+..
T Consensus 11 ~~s~~Igvi~~~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdGiIi~~~~~~ 82 (301)
T 3miz_A 11 SRSNTFGIITDYVSTTPYSVDIV-RGIQDWANANGKTILIANTGGSSEREVEIWKMFQS-HRIDGVLYVTMYRR 82 (301)
T ss_dssp -CCCEEEEEESSTTTCCSCHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEEEEEEEE
T ss_pred CCCCEEEEEeCCCcCcccHHHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh-CCCCEEEEecCCcc
Confidence 45677888886554333321444 57888999999998887765432 23445555543 35899999987753
No 143
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=29.57 E-value=74 Score=36.11 Aligned_cols=52 Identities=27% Similarity=0.418 Sum_probs=35.4
Q ss_pred HHHHHhhhcCCCCCeEEEcCchHHHHHH---HHHHcCCCcccCCCccEEEeecCCcchhhh
Q 003783 326 NLASTVDISSCPDGIICVGGDGIINEVL---NGLLSRGNQKEGISIPIGIIPAGSDNSLVW 383 (795)
Q Consensus 326 ela~~l~~~~~~D~IVvvGGDGTlnEVv---NGL~~r~d~~~a~~iPLGIIP~GTGNdfAr 383 (795)
++++.+... +.|.+|++|||||+.-+. +.+.++ ..++++--||.==-||+.-
T Consensus 180 ~i~~~l~~~-~Id~LvvIGGdgS~~~A~~L~e~~~~~-----g~~i~vVGIPkTIDNDl~g 234 (487)
T 2hig_A 180 EMVDTLERL-GVNILFTVGGDGTQRGALVISQEAKRR-----GVDISVFGVPKTIDNDLSF 234 (487)
T ss_dssp HHHHHHHHH-TCSEEEEEECHHHHHHHHHHHHHHHHH-----TCCCEEEEEECCTTSSCCC
T ss_pred HHHHHHHHc-CCCEEEEeCCCchHHHHHHHHHHHHHh-----CCCceEEeccccccCCCCC
Confidence 444444332 479999999999987442 222222 2368999999988899874
No 144
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=29.52 E-value=1.1e+02 Score=29.85 Aligned_cols=61 Identities=15% Similarity=0.161 Sum_probs=38.3
Q ss_pred cccCCCCCeEEEEEcCCC-------CCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhh
Q 003783 272 IFRCKSPPKMLVILNPRS-------GRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVD 332 (795)
Q Consensus 272 ~~~~~r~krllVIvNP~S-------G~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~ 332 (795)
|.....++.+.||||-.. ....+...=.+.++.+|+..|++++++.=-...+..+..+++.
T Consensus 37 Y~m~~~~rG~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LgF~V~v~~dlt~~em~~~l~~~s 104 (173)
T 2ql9_A 37 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKAS 104 (173)
T ss_dssp CCCCSSEEEEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHHTEEEEEEESCCHHHHHHHHHHHH
T ss_pred cccCCCCceEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 333445677888887541 1223333334678899999999988886555555556555554
No 145
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=29.26 E-value=88 Score=31.70 Aligned_cols=75 Identities=13% Similarity=0.236 Sum_probs=48.0
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHH
Q 003783 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL 356 (795)
.-+|+.+|.+|... .+...+ +..+..++++|+++.........+..+.++++. . .+|+|++ ..|.+.-.++..|
T Consensus 139 g~~~I~~i~~~~~~--~~~~r~-~g~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~-~-~~dai~~-~~D~~a~g~~~~l 212 (302)
T 2qh8_A 139 NVKSIGVVYNPGEA--NAVSLM-ELLKLSAAKHGIKLVEATALKSADVQSATQAIA-E-KSDVIYA-LIDNTVASAIEGM 212 (302)
T ss_dssp TCCEEEEEECTTCH--HHHHHH-HHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHG-G-GCSEEEE-CSCHHHHTTHHHH
T ss_pred CCcEEEEEecCCCc--chHHHH-HHHHHHHHHcCCEEEEEecCChHHHHHHHHHHh-c-cCCEEEE-CCcHhHHHHHHHH
Confidence 35799999998532 132333 456778899999887665555566667777764 2 3676655 6787765554444
Q ss_pred H
Q 003783 357 L 357 (795)
Q Consensus 357 ~ 357 (795)
.
T Consensus 213 ~ 213 (302)
T 2qh8_A 213 I 213 (302)
T ss_dssp H
T ss_pred H
Confidence 3
No 146
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=29.09 E-value=62 Score=29.30 Aligned_cols=85 Identities=15% Similarity=0.236 Sum_probs=47.1
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCC-CCCeEEEc---Cch------H
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSC-PDGIICVG---GDG------I 348 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~-~D~IVvvG---GDG------T 348 (795)
|+++||+=-. .|...++. +.|...|...|++++++....... ..+ .. +|.||++. |.| .
T Consensus 1 mki~iiy~S~--~Gnt~~~a-~~i~~~l~~~g~~v~~~~~~~~~~-----~~l---~~~~d~ii~~~p~y~~g~~~~p~~ 69 (147)
T 1f4p_A 1 PKALIVYGST--TGNTEYTA-ETIARELADAGYEVDSRDAASVEA-----GGL---FEGFDLVLLGCSTWGDDSIELQDD 69 (147)
T ss_dssp CEEEEEEECS--SSHHHHHH-HHHHHHHHHHTCEEEEEEGGGCCS-----TTT---TTTCSEEEEEECEECSSSCEECTT
T ss_pred CeEEEEEECC--cCHHHHHH-HHHHHHHHhcCCeeEEEehhhCCH-----HHh---cCcCCEEEEEeCCCCCCCcCCChh
Confidence 4678887443 44555555 577778888898887765432210 112 23 68777652 333 4
Q ss_pred HHHHHHHHHcCCCcccCCCccEEEeecCCc
Q 003783 349 INEVLNGLLSRGNQKEGISIPIGIIPAGSD 378 (795)
Q Consensus 349 lnEVvNGL~~r~d~~~a~~iPLGIIP~GTG 378 (795)
+...+..|.... ....+++++-+|.+
T Consensus 70 ~~~fl~~l~~~~----l~~k~~~v~~~g~~ 95 (147)
T 1f4p_A 70 FIPLFDSLEETG----AQGRKVACFGCGDS 95 (147)
T ss_dssp THHHHHTGGGSC----CTTCEEEEEEEECT
T ss_pred HHHHHHHHHhcc----cCCCEEEEEeecCC
Confidence 555555443211 22467777766544
No 147
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=29.07 E-value=1.3e+02 Score=29.44 Aligned_cols=84 Identities=11% Similarity=0.110 Sum_probs=56.5
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC---CcchHHHHHHHhhhcCCCC-CeEEEcCchHHHHHHH
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT---SAGHAKNLASTVDISSCPD-GIICVGGDGIINEVLN 354 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~---~~ghA~ela~~l~~~~~~D-~IVvvGGDGTlnEVvN 354 (795)
.++.||. |......+. +++...|+..|++|++.+.. .++...++++++...+ .+ .|+++|+.+-|--|+-
T Consensus 7 ~~V~Iim----gS~SD~~v~-~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g-~~ViIa~AG~aa~LpgvvA 80 (169)
T 3trh_A 7 IFVAILM----GSDSDLSTM-ETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRG-CAVFIAAAGLAAHLAGTIA 80 (169)
T ss_dssp CEEEEEE----SCGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTT-EEEEEEEECSSCCHHHHHH
T ss_pred CcEEEEE----CcHHhHHHH-HHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCC-CcEEEEECChhhhhHHHHH
Confidence 3566665 444444445 46777999999999988753 2455677777665432 44 5678899999999999
Q ss_pred HHHcCCCcccCCCccEEEeecCC
Q 003783 355 GLLSRGNQKEGISIPIGIIPAGS 377 (795)
Q Consensus 355 GL~~r~d~~~a~~iPLGIIP~GT 377 (795)
++.. .|+--+|.-+
T Consensus 81 ~~t~---------~PVIgVP~~~ 94 (169)
T 3trh_A 81 AHTL---------KPVIGVPMAG 94 (169)
T ss_dssp HTCS---------SCEEEEECCC
T ss_pred hcCC---------CCEEEeecCC
Confidence 9753 4665556543
No 148
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=29.04 E-value=1.1e+02 Score=31.98 Aligned_cols=113 Identities=12% Similarity=0.054 Sum_probs=62.2
Q ss_pred ccccCCCCCeEEEEEcCCCC-------CCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhc--CCCCC-e
Q 003783 271 LIFRCKSPPKMLVILNPRSG-------RGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDIS--SCPDG-I 340 (795)
Q Consensus 271 ~~~~~~r~krllVIvNP~SG-------~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~--~~~D~-I 340 (795)
.|....+++++.+|||-..= ...+...=.+.++.+|+..|++++++.=-...+..+..+++... ..+|. |
T Consensus 36 ~Y~m~~~~rg~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~dh~~~d~~v 115 (277)
T 4ehd_A 36 SYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFV 115 (277)
T ss_dssp BCCCCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTEEEEE
T ss_pred cccCCCCCCCEEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhhcccCCCEEE
Confidence 34455677888888874321 12222222357889999999998887655555655655655432 12343 2
Q ss_pred EE----------EcCchH--HHHHHHHHHcCCCcccCCCccEEEeecCCcchhhh
Q 003783 341 IC----------VGGDGI--INEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVW 383 (795)
Q Consensus 341 Vv----------vGGDGT--lnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfAr 383 (795)
|+ .|=||. |.++++-+-...-..-..++-|-||-+=-||.+..
T Consensus 116 v~ilSHG~~g~i~g~D~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~~~ 170 (277)
T 4ehd_A 116 CVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDC 170 (277)
T ss_dssp EEEESCEETTEEEETTEEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSSBCBC
T ss_pred EEEEcCCCCCEEEEeCCcEeHHHHHHHhhhccCchhcCCccEEEEecCCCCcccC
Confidence 22 344552 34444433221111112245688888877777764
No 149
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=28.58 E-value=2e+02 Score=32.14 Aligned_cols=83 Identities=12% Similarity=0.165 Sum_probs=57.4
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC---CcchHHHHHHHhhhcCCC-C-CeEEEcCchHHHHH
Q 003783 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT---SAGHAKNLASTVDISSCP-D-GIICVGGDGIINEV 352 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~---~~ghA~ela~~l~~~~~~-D-~IVvvGGDGTlnEV 352 (795)
..++.||. |+.....+. +.+...|+..|++|++.+.. .++...++++++.... . + .|+++||.|.|--|
T Consensus 265 ~~~V~Ii~----gs~SD~~~~-~~a~~~l~~~gi~~~v~V~saHR~p~~~~~~~~~~~~~g-~~~viIa~AG~~a~Lpgv 338 (425)
T 2h31_A 265 QCRVVVLM----GSTSDLGHC-EKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDG-IPTVFVAVAGRSNGLGPV 338 (425)
T ss_dssp CCEEEEEE----SCGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHTTC-CCEEEEEECCSSCCHHHH
T ss_pred CCeEEEEe----cCcccHHHH-HHHHHHHHHcCCceEEeeeeccCCHHHHHHHHHHHHHCC-CCeEEEEEcCcccchHhH
Confidence 35677776 434344455 46677899999999888752 2456677777765433 4 2 57788999999999
Q ss_pred HHHHHcCCCcccCCCccEEEeec
Q 003783 353 LNGLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 353 vNGL~~r~d~~~a~~iPLGIIP~ 375 (795)
+.++.. .|+--+|.
T Consensus 339 va~~t~---------~PVIgvP~ 352 (425)
T 2h31_A 339 MSGNTA---------YPVISCPP 352 (425)
T ss_dssp HHHHCS---------SCEEECCC
T ss_pred HhccCC---------CCEEEeeC
Confidence 999853 46656665
No 150
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=28.13 E-value=1.7e+02 Score=29.61 Aligned_cols=40 Identities=18% Similarity=0.072 Sum_probs=23.8
Q ss_pred CCCCeEEEcCchHHH-----HHHHHHHcCCCcccCCCccEEEeecCCc
Q 003783 336 CPDGIICVGGDGIIN-----EVLNGLLSRGNQKEGISIPIGIIPAGSD 378 (795)
Q Consensus 336 ~~D~IVvvGGDGTln-----EVvNGL~~r~d~~~a~~iPLGIIP~GTG 378 (795)
.||+|++.||-|... +.+..++.+-. ....+||-|=.|..
T Consensus 98 ~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~---~~gk~iaaIC~G~~ 142 (244)
T 3kkl_A 98 DYKVFFASAGHGALFDYPKAKNLQDIASKIY---ANGGVIAAICHGPL 142 (244)
T ss_dssp GCSEEEECCSTTHHHHGGGCHHHHHHHHHHH---HTTCEEEEETTGGG
T ss_pred hCCEEEEcCCCchhhhcccCHHHHHHHHHHH---HcCCEEEEECHHHH
Confidence 379999999998742 22222222110 11468888877764
No 151
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=27.85 E-value=33 Score=30.77 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=19.3
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003783 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
++|.|.++|.+|++.|+++|.
T Consensus 100 r~~~l~A~s~~e~~~Wi~ai~ 120 (128)
T 2rlo_A 100 QTWHFEAASFEERDAWVQAIE 120 (128)
T ss_dssp CEEEEEESSHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHH
Confidence 579999999999999999984
No 152
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=27.78 E-value=1.3e+02 Score=30.13 Aligned_cols=67 Identities=10% Similarity=0.113 Sum_probs=42.7
Q ss_pred HhHHHHHHHcCCeEEEEEeC---CcchHHHHHHHhhhcCCCCCeEEEcCchH-HHHHHHHHHcCCCcccCCCccEEEee
Q 003783 300 DIVEPIFKLAGFKLEVVKTT---SAGHAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~---~~ghA~ela~~l~~~~~~D~IVvvGGDGT-lnEVvNGL~~r~d~~~a~~iPLGIIP 374 (795)
+-++..+++.|+++.+..+. ......+..+.+.. ..+|+||+++-|.. +.+.+..+... ++|+-.+-
T Consensus 23 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~~~~~~~~~~~~~~~-------giPvV~~~ 93 (297)
T 3rot_A 23 QGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALA-TYPSGIATTIPSDTAFSKSLQRANKL-------NIPVIAVD 93 (297)
T ss_dssp HHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHH-TCCSEEEECCCCSSTTHHHHHHHHHH-------TCCEEEES
T ss_pred HHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHH-cCCCEEEEeCCCHHHHHHHHHHHHHC-------CCCEEEEc
Confidence 46777888889988877655 23333344555543 35899999888764 35556666543 47776653
No 153
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=27.60 E-value=1.9e+02 Score=29.15 Aligned_cols=67 Identities=13% Similarity=0.123 Sum_probs=41.0
Q ss_pred HhHHHHHHHcCCeEEEEEeCCc--chHHHHHHHhhhcCCCCCeEEEcCchH-HHHHHHHHHcCCCcccCCCccEEEee
Q 003783 300 DIVEPIFKLAGFKLEVVKTTSA--GHAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~--ghA~ela~~l~~~~~~D~IVvvGGDGT-lnEVvNGL~~r~d~~~a~~iPLGIIP 374 (795)
+-++..+++.|+++.+...... ....++++.+.. ..+|+||+++.|.. +.+.+..+... ++|+-.+-
T Consensus 20 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~~~~~~~~~~-------~iPvV~~~ 89 (313)
T 2h3h_A 20 QGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIA-EGVNGIAIAPSDPTAVIPTIKKALEM-------GIPVVTLD 89 (313)
T ss_dssp HHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHH-TTCSEEEECCSSTTTTHHHHHHHHHT-------TCCEEEES
T ss_pred HHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChHHHHHHHHHHHHC-------CCeEEEeC
Confidence 4567778888988766543222 222344555543 35899999988764 34566666543 47776653
No 154
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=27.27 E-value=1.2e+02 Score=30.16 Aligned_cols=87 Identities=6% Similarity=-0.056 Sum_probs=49.2
Q ss_pred CCCeEEEEEcC-CC--CCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-chHHHHHHHhhhcCCCCCeEEEcCchHHHHH
Q 003783 277 SPPKMLVILNP-RS--GRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEV 352 (795)
Q Consensus 277 r~krllVIvNP-~S--G~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~-ghA~ela~~l~~~~~~D~IVvvGGDGTlnEV 352 (795)
+.+.+.||+.- .. ...-...++ +.++..+++.|+.+.+..+... ....++.+.+.. ..+|+||+++.+.+ .+.
T Consensus 3 ~s~~Ig~i~~~~~~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~-~~~ 79 (287)
T 3bbl_A 3 LSFMIGYSWTQTEPGQVNHILDQFL-SSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRS-GNVDGFVLSSINYN-DPR 79 (287)
T ss_dssp CCCEEEECCCCCCTTCSCCTHHHHH-HHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHT-TCCSEEEECSCCTT-CHH
T ss_pred ceeEEEEEecccccccCChhHHHHH-HHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHc-CCCCEEEEeecCCC-cHH
Confidence 44566666643 22 111222333 5677788889988766544322 222445555543 35899999987654 255
Q ss_pred HHHHHcCCCcccCCCccEEEe
Q 003783 353 LNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 353 vNGL~~r~d~~~a~~iPLGII 373 (795)
+..|... ++|+-.+
T Consensus 80 ~~~l~~~-------~iPvV~~ 93 (287)
T 3bbl_A 80 VQFLLKQ-------KFPFVAF 93 (287)
T ss_dssp HHHHHHT-------TCCEEEE
T ss_pred HHHHHhc-------CCCEEEE
Confidence 5555443 4776665
No 155
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=27.18 E-value=1.3e+02 Score=30.62 Aligned_cols=112 Identities=12% Similarity=0.017 Sum_probs=60.6
Q ss_pred cccCCCCCeEEEEEcCCCC-------CCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhc--CCCC-CeE
Q 003783 272 IFRCKSPPKMLVILNPRSG-------RGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDIS--SCPD-GII 341 (795)
Q Consensus 272 ~~~~~r~krllVIvNP~SG-------~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~--~~~D-~IV 341 (795)
|.....++++.+|||-..= ...+...=.+.++.+|+..|++++++.=-...+..+..+++... ..+| .||
T Consensus 9 Y~m~~~~rg~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~~~~~d~~v~ 88 (250)
T 2j32_A 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVC 88 (250)
T ss_dssp CCCCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTEEEEEE
T ss_pred ccCCCCCccEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhhccCCCEEEE
Confidence 3334566778777775321 12222222367889999999998877655555555555555432 1234 233
Q ss_pred EEcC----------ch--HHHHHHHHHHcCCCcccCCCccEEEeecCCcchhhh
Q 003783 342 CVGG----------DG--IINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVW 383 (795)
Q Consensus 342 vvGG----------DG--TlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfAr 383 (795)
++=| || -+.++++-+-...-..-..++-|-||-+=-||.+..
T Consensus 89 ~~lsHG~~g~i~~~D~~v~l~~i~~~f~~~~cp~L~gKPKlf~iqACRg~~~~~ 142 (250)
T 2j32_A 89 VLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDC 142 (250)
T ss_dssp EEESCEETTEEEETTEEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCSEEECBC
T ss_pred EECCCCCCCeEEecCCcEEHHHHHHHhccccChhHcCCCeEEEEecccCCcccC
Confidence 3333 33 344454444221111112245678888877777754
No 156
>3ulb_A Target of rapamycin complex 2 subunit AVO1; PH domain, membrane localization, membrane protein; 1.90A {Saccharomyces cerevisiae} PDB: 3ulc_A
Probab=27.16 E-value=1.3e+02 Score=28.02 Aligned_cols=52 Identities=21% Similarity=0.247 Sum_probs=39.5
Q ss_pred ccCCcceEEEEecCC-cceEEEEEeecCCCCCccccccCCeeeEeEEEEecCCHHHHHHHHHhhh
Q 003783 175 VLPLDDIVSVSYNNG-LRHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 175 ~l~l~d~~~~~~~~~-~~~~~i~~y~~~k~~~g~~~~~~~~r~~~~~~f~~~~~~~a~~W~~~~~ 238 (795)
.++..+||+|...+. ..+|-|.-|-.. ....|.|.|++.|.+||..=++.|+
T Consensus 58 S~H~s~Vv~~K~s~k~P~~FKivV~k~~------------~~e~KrYdfEA~s~~ea~EIV~~ik 110 (121)
T 3ulb_A 58 SLHISQVVLVKKSKRVPEHFKIFVRREG------------QDDIKRYYFEAVSGQECTEIVTRLQ 110 (121)
T ss_dssp EEEGGGEEEEEECSSCTTEEEEEECCTT------------CSSCEEEEEEESSHHHHHHHHHHHH
T ss_pred EEEEeeEEEEEecccCCCcEEEEEEccC------------CCCcceeEEEeCCHHHHHHHHHHHH
Confidence 356779999998776 567888765421 1235889999999999999988874
No 157
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=27.07 E-value=96 Score=29.63 Aligned_cols=48 Identities=21% Similarity=0.183 Sum_probs=29.2
Q ss_pred HhHHHHHHHcCCeEEEEEeCC--cchHHHHHHHhhhcCCCCCeEEEcCch
Q 003783 300 DIVEPIFKLAGFKLEVVKTTS--AGHAKNLASTVDISSCPDGIICVGGDG 347 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~--~ghA~ela~~l~~~~~~D~IVvvGGDG 347 (795)
..|..+|++.|+++..+.+-. .+...+..+++.....+|.||+.||=|
T Consensus 43 ~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g 92 (178)
T 3iwt_A 43 DIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTG 92 (178)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCS
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCcc
Confidence 457889999999875544332 222222223222223479999999966
No 158
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=26.94 E-value=95 Score=38.14 Aligned_cols=60 Identities=25% Similarity=0.239 Sum_probs=40.0
Q ss_pred hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeecCCcchhhhh
Q 003783 323 HAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (795)
Q Consensus 323 hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArs 384 (795)
+..++++.+... ..|.+|++|||||+.- ++.|.+.........+|+--||.==-||+.-+
T Consensus 676 ~~~~i~~~l~~~-~Id~LvvIGGdgS~~~-a~~L~~~~~~y~~~~I~vVGIPkTIDNDl~gT 735 (989)
T 3opy_A 676 DMGTVAYYFQQY-KFDGLIIIGGFEAFTA-LYELDAARAQYPIFNIPMCCLPATVSNNVPGT 735 (989)
T ss_dssp GHHHHHHHHHHH-TCSEEEEEESHHHHHH-HHHHHHHTTTCGGGCSCEEEEEBCSSCCCTTC
T ss_pred hHHHHHHHHHHc-CCCEEEEeCCchHHHH-HHHHHHHHhhCCCcCCcEEeccccccCCCCCC
Confidence 445566555443 4799999999999854 45565421111113689999999888999754
No 159
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=26.87 E-value=37 Score=30.66 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=19.5
Q ss_pred eEEEEecCCHHHHHHHHHhhhc
Q 003783 218 KDYRFLASTTEEAIQWVGGFAD 239 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~~ 239 (795)
++|.|.+++.+++++|+++|..
T Consensus 90 r~~~l~A~s~~e~~~Wi~al~~ 111 (130)
T 2d9v_A 90 SRLHLCAETRDDAIAWKTALME 111 (130)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHH
Confidence 3699999999999999999953
No 160
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=26.54 E-value=1.2e+02 Score=31.17 Aligned_cols=61 Identities=13% Similarity=0.044 Sum_probs=36.2
Q ss_pred cccCCCCCeEEEEEcCCCC------CCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhh
Q 003783 272 IFRCKSPPKMLVILNPRSG------RGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVD 332 (795)
Q Consensus 272 ~~~~~r~krllVIvNP~SG------~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~ 332 (795)
|....+++++.+|||-..= ...+...=.+.++.+|+..|++++++.=-...+..+..+++.
T Consensus 13 Y~m~~~~rg~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~ 79 (259)
T 3sir_A 13 YNMRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVYKDCRYKDILRTIEYSA 79 (259)
T ss_dssp CCCCSSEEEEEEEEEECCC-----------CCHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHHHH
T ss_pred CCCCCCCccEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 3344566777777765321 111111112578899999999998887666666566666554
No 161
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=26.44 E-value=2.7e+02 Score=28.43 Aligned_cols=89 Identities=12% Similarity=0.134 Sum_probs=49.3
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003783 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 276 ~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
++.+.+.||+.-. ...-...++ +.++..+++.|+.+.+..+.... ...++.+.+.. ..+|+||+++.+.. .+.+.
T Consensus 56 ~~~~~Igvi~~~~-~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~-~~~~~ 131 (340)
T 1qpz_A 56 NHTKSIGLLATSS-EAAYFAEII-EAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQ-KRVDGLLVMCSEYP-EPLLA 131 (340)
T ss_dssp TCCSEEEEEESCS-CSHHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECCSCCC-HHHHH
T ss_pred CCCCEEEEEeCCC-CChHHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHc-CCCCEEEEeCCCCC-hHHHH
Confidence 4566777777432 211112233 45677888899988776554322 22334555533 35899999987753 13344
Q ss_pred HHHcCCCcccCCCccEEEee
Q 003783 355 GLLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 355 GL~~r~d~~~a~~iPLGIIP 374 (795)
.|... .++|+-++-
T Consensus 132 ~l~~~------~~iPvV~~~ 145 (340)
T 1qpz_A 132 MLEEY------RHIPMVVMD 145 (340)
T ss_dssp HHHTT------TTSCEEEEE
T ss_pred HHHhh------CCCCEEEEe
Confidence 44321 147766653
No 162
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=26.27 E-value=39 Score=29.87 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=19.3
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003783 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
++|.|.+++.++.++|+++|+
T Consensus 93 ~~~~f~A~s~~e~~~Wi~ai~ 113 (123)
T 1wjm_A 93 KEYLFQAKDEAEMSSWLRVVN 113 (123)
T ss_dssp CEEEEECSSHHHHHHHHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHH
Confidence 579999999999999999994
No 163
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=26.20 E-value=1.8e+02 Score=27.15 Aligned_cols=84 Identities=15% Similarity=0.210 Sum_probs=48.4
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEc----CchHHH--HH
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVG----GDGIIN--EV 352 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvG----GDGTln--EV 352 (795)
|+++|||=-.. |...++. +.|...|...|++++++..... +..++...+. .+|.||+.. |+ +- ..
T Consensus 1 Mkv~IvY~S~t--GnT~~~A-~~ia~~l~~~g~~v~~~~~~~~-~~~~~~~~~~---~~d~ii~Gspty~g~--~p~~~f 71 (161)
T 3hly_A 1 MSVLIGYLSDY--GYSDRLS-QAIGRGLVKTGVAVEMVDLRAV-DPQELIEAVS---SARGIVLGTPPSQPS--EAVATA 71 (161)
T ss_dssp -CEEEEECTTS--TTHHHHH-HHHHHHHHHTTCCEEEEETTTC-CHHHHHHHHH---HCSEEEEECCBSSCC--HHHHHH
T ss_pred CEEEEEEECCC--hHHHHHH-HHHHHHHHhCCCeEEEEECCCC-CHHHHHHHHH---hCCEEEEEcCCcCCc--hhHHHH
Confidence 46788885444 4555555 5778888889998887765543 3445555543 258776653 43 33 45
Q ss_pred HHHHHcCCCcccCCCccEEEeec
Q 003783 353 LNGLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 353 vNGL~~r~d~~~a~~iPLGIIP~ 375 (795)
+..|.... ....+++++-.
T Consensus 72 l~~l~~~~----l~gk~v~~fgs 90 (161)
T 3hly_A 72 LSTIFAAA----HNKQAIGLFDS 90 (161)
T ss_dssp HHHHHHHC----CTTSEEEEECC
T ss_pred HHHHHhhh----hCCCEEEEEEc
Confidence 55443311 12456777643
No 164
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=26.13 E-value=1.1e+02 Score=30.15 Aligned_cols=88 Identities=16% Similarity=0.044 Sum_probs=47.7
Q ss_pred CCCeEEEEEcCCCC--CCCchhhHHHhHHHHHHHcCCeEEEEEeC---CcchHHHHHHHhhhcCCCCCeEEEcCchH-HH
Q 003783 277 SPPKMLVILNPRSG--RGRSSKVFHDIVEPIFKLAGFKLEVVKTT---SAGHAKNLASTVDISSCPDGIICVGGDGI-IN 350 (795)
Q Consensus 277 r~krllVIvNP~SG--~Gka~ki~~~~I~plL~~aGi~~~v~~T~---~~ghA~ela~~l~~~~~~D~IVvvGGDGT-ln 350 (795)
+.+++.||+. ..+ ..-...++ +.++..+++.|+++.+..+. ......++.+.+.. ..+|+||+.+.+.. +.
T Consensus 4 ~~~~Ig~v~~-~~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgii~~~~~~~~~~ 80 (289)
T 3brs_A 4 KQYYMICIPK-VLDDSSDFWSVLV-EGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIK-RKPDVILLAAADYEKTY 80 (289)
T ss_dssp -CCEEEEECS-CCCSSSHHHHHHH-HHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHH-TCCSEEEECCSCTTTTH
T ss_pred CCcEEEEEeC-CCCCCchHHHHHH-HHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHH-hCCCEEEEeCCChHHhH
Confidence 4456666653 332 11112222 45677788889888766553 22223345555543 35899999988764 22
Q ss_pred HHHHHHHcCCCcccCCCccEEEee
Q 003783 351 EVLNGLLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 351 EVvNGL~~r~d~~~a~~iPLGIIP 374 (795)
+.+..+.. .++|+-++-
T Consensus 81 ~~~~~~~~-------~~iPvV~~~ 97 (289)
T 3brs_A 81 DAAKEIKD-------AGIKLIVID 97 (289)
T ss_dssp HHHTTTGG-------GTCEEEEES
T ss_pred HHHHHHHH-------CCCcEEEEC
Confidence 44443332 257776653
No 165
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=25.99 E-value=41 Score=28.49 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=19.1
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003783 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
++|.|.++|.++..+|+++|.
T Consensus 84 ~~~~~~A~s~~e~~~Wi~ai~ 104 (106)
T 1btn_A 84 NEYLFQAKDDEEMNTWIQAIS 104 (106)
T ss_dssp CEEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHh
Confidence 578999999999999999984
No 166
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=25.95 E-value=92 Score=30.31 Aligned_cols=93 Identities=22% Similarity=0.188 Sum_probs=51.7
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc-------h-----HHHHHHHhhhcCCCCCeEEEcC
Q 003783 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-------H-----AKNLASTVDISSCPDGIICVGG 345 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g-------h-----A~ela~~l~~~~~~D~IVvvGG 345 (795)
++|++||+-|.. ....+. .....|+.+|++++++-.+... + +.....+++. ..+|.||+.||
T Consensus 2 ~~kV~ill~~g~---~~~e~~--~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~-~~~D~livpGG 75 (205)
T 2ab0_A 2 SASALVCLAPGS---EETEAV--TTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVAD-GEYDVIVLPGG 75 (205)
T ss_dssp CCEEEEEECTTC---CHHHHH--HHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTT-SCCSEEEECCC
T ss_pred CcEEEEEEcCCC---cHHHHH--HHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCc-ccCCEEEECCC
Confidence 468888888633 222222 2345799999998877554320 0 0001122222 24799999999
Q ss_pred chHHH---------HHHHHHHcCCCcccCCCccEEEeecCCcchhhh
Q 003783 346 DGIIN---------EVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVW 383 (795)
Q Consensus 346 DGTln---------EVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfAr 383 (795)
.+... +.+.....+ ..+|+-|=.|.+-.||.
T Consensus 76 ~~~~~~l~~~~~l~~~l~~~~~~-------gk~i~aiC~G~~~lLa~ 115 (205)
T 2ab0_A 76 IKGAECFRDSTLLVETVKQFHRS-------GRIVAAICAAPATVLVP 115 (205)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHT-------TCEEEEETHHHHHHTTT
T ss_pred cccHHHhccCHHHHHHHHHHHHc-------CCEEEEECHhHHHHHHH
Confidence 75322 122222222 46788887777555664
No 167
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=25.87 E-value=3.5e+02 Score=27.81 Aligned_cols=66 Identities=11% Similarity=-0.012 Sum_probs=37.5
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc--chHHHHHHHhhhcCCCCCeEEEcC
Q 003783 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA--GHAKNLASTVDISSCPDGIICVGG 345 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~--ghA~ela~~l~~~~~~D~IVvvGG 345 (795)
+.+.+.||+.- -...-...++ ..++..+++.|+.+.+..+... ....++.+.+.. ..+|+||+++.
T Consensus 60 ~~~~Igvi~~~-~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~l~~-~~vdGiIi~~~ 127 (349)
T 1jye_A 60 QSLLIGVATSS-LALHAPSQIV-AAILSRADQLGASVVVSMVERSGVEACKTAVHNLLA-QRVSGLIINYP 127 (349)
T ss_dssp --CEEEEEESC-TTSHHHHHHH-HHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHHT-TTCSCEEEESC
T ss_pred CCCEEEEEeCC-CCcccHHHHH-HHHHHHHHHcCCEEEEEeCCCCcHHHHHHHHHHHHH-CCCCEEEEecC
Confidence 45667777642 2211112333 4567788889998887766543 222344555533 45899999864
No 168
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.80 E-value=44 Score=29.17 Aligned_cols=21 Identities=19% Similarity=0.653 Sum_probs=19.3
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003783 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
++|.|.+++.+++.+|+++|.
T Consensus 77 r~~~l~a~s~~e~~~Wi~al~ 97 (114)
T 2da0_A 77 RTYHFQAEDEQDYVAWISVLT 97 (114)
T ss_dssp EEEEEECSSHHHHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHH
Confidence 579999999999999999995
No 169
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=25.77 E-value=86 Score=30.87 Aligned_cols=45 Identities=20% Similarity=0.479 Sum_probs=31.7
Q ss_pred hHHHHHHHhhhcCCCCCeEEEc-Cc-hHHHHHHHHHHcCCCcccCCCccEEEeecC
Q 003783 323 HAKNLASTVDISSCPDGIICVG-GD-GIINEVLNGLLSRGNQKEGISIPIGIIPAG 376 (795)
Q Consensus 323 hA~ela~~l~~~~~~D~IVvvG-GD-GTlnEVvNGL~~r~d~~~a~~iPLGIIP~G 376 (795)
.|+++++.+... ...||.| |. |..-.+..|.++.. ...+||+|.+
T Consensus 21 ~A~~lg~~La~~---g~~lV~GGg~~GiM~aa~~gA~~~g------G~~iGv~p~~ 67 (191)
T 1t35_A 21 KAAELGVYMAEQ---GIGLVYGGSRVGLMGTIADAIMENG------GTAIGVMPSG 67 (191)
T ss_dssp HHHHHHHHHHHT---TCEEEECCCCSHHHHHHHHHHHTTT------CCEEEEEETT
T ss_pred HHHHHHHHHHHC---CCEEEECCCcccHHHHHHHHHHHcC------CeEEEEeCch
Confidence 456667776543 3444554 56 99999999988753 5789999986
No 170
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=25.60 E-value=35 Score=30.11 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=19.1
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003783 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
+.|.|.++|.++++.|+++|.
T Consensus 77 ~~y~f~A~s~ee~~~Wi~ai~ 97 (112)
T 3cxb_B 77 PCLELSAESEAEMAEWMQHLC 97 (112)
T ss_dssp CCEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHH
Confidence 469999999999999999994
No 171
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=25.43 E-value=2.2e+02 Score=30.04 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=32.2
Q ss_pred CeEEEEEcCCC----CCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHh
Q 003783 279 PKMLVILNPRS----GRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTV 331 (795)
Q Consensus 279 krllVIvNP~S----G~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l 331 (795)
+|+.+|||-.. ....+...=.+.++.+|+..|++++++.=-...+..+..+++
T Consensus 60 ~r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f 116 (302)
T 3e4c_A 60 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTTELEAF 116 (302)
T ss_dssp CCEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHH
T ss_pred ccEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHH
Confidence 55666665442 122222222367889999999998877655555555555554
No 172
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=25.07 E-value=84 Score=31.13 Aligned_cols=45 Identities=18% Similarity=0.338 Sum_probs=30.6
Q ss_pred HHHHHHHhhhcCCCCCeEEEcCc-hHHHHHHHHHHcCCCcccCCCccEEEeecC
Q 003783 324 AKNLASTVDISSCPDGIICVGGD-GIINEVLNGLLSRGNQKEGISIPIGIIPAG 376 (795)
Q Consensus 324 A~ela~~l~~~~~~D~IVvvGGD-GTlnEVvNGL~~r~d~~~a~~iPLGIIP~G 376 (795)
|+++.+.+...+ -.||.-||. |....+..|..+.. ...+||+|--
T Consensus 33 A~~lg~~la~~g--~~lv~GGG~~GlM~a~~~ga~~~G------G~viGv~p~~ 78 (189)
T 3sbx_A 33 AGAVGAAIAARG--WTLVWGGGHVSAMGAVSSAARAHG------GWTVGVIPKM 78 (189)
T ss_dssp HHHHHHHHHHTT--CEEEECCBCSHHHHHHHHHHHTTT------CCEEEEEETT
T ss_pred HHHHHHHHHHCC--CEEEECCCccCHHHHHHHHHHHcC------CcEEEEcCch
Confidence 455666665422 244444567 99999999988753 5789999974
No 173
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.05 E-value=43 Score=28.91 Aligned_cols=22 Identities=27% Similarity=0.638 Sum_probs=19.6
Q ss_pred eEEEEecCCHHHHHHHHHhhhc
Q 003783 218 KDYRFLASTTEEAIQWVGGFAD 239 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~~ 239 (795)
++|.|.+++.+++++|+++|..
T Consensus 85 r~~~l~a~s~~e~~~Wi~al~~ 106 (117)
T 2d9y_A 85 RTYFFSAESPEEQEAWIQAMGE 106 (117)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHH
Confidence 5699999999999999999953
No 174
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=24.91 E-value=45 Score=29.99 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=19.2
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003783 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
++|.|.+++.+++++|+.+|.
T Consensus 82 ~~y~f~A~s~e~~~~Wl~al~ 102 (112)
T 2coc_A 82 QSWYLSASSAELQQQWLETLS 102 (112)
T ss_dssp EEEEEEESSHHHHHHHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHH
Confidence 469999999999999999984
No 175
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=24.80 E-value=1.4e+02 Score=29.12 Aligned_cols=74 Identities=22% Similarity=0.293 Sum_probs=41.4
Q ss_pred HHHHHHHcCCeEEEEEeCCcc------h------H-----HHHHHHhhh----cCCCCCeEEEcCchHHH---------H
Q 003783 302 VEPIFKLAGFKLEVVKTTSAG------H------A-----KNLASTVDI----SSCPDGIICVGGDGIIN---------E 351 (795)
Q Consensus 302 I~plL~~aGi~~~v~~T~~~g------h------A-----~ela~~l~~----~~~~D~IVvvGGDGTln---------E 351 (795)
....|+.+|++++++-.+... . . ..+.....+ ...||+||+.||.|... +
T Consensus 34 p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~~ 113 (224)
T 1u9c_A 34 PYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQY 113 (224)
T ss_dssp HHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHHSTTCHHHHH
T ss_pred HHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCChHHcChhhCCEEEECCCcchHHHhhcCHHHHH
Confidence 445789999998887654321 0 1 122111111 12489999999988641 2
Q ss_pred HHHHHHcCCCcccCCCccEEEeecCCcchhhh
Q 003783 352 VLNGLLSRGNQKEGISIPIGIIPAGSDNSLVW 383 (795)
Q Consensus 352 VvNGL~~r~d~~~a~~iPLGIIP~GTGNdfAr 383 (795)
.+..+..+ ..+|+-|=.|.. .||+
T Consensus 114 ~l~~~~~~-------~k~iaaiC~G~~-~La~ 137 (224)
T 1u9c_A 114 VLQQFAED-------GRIIAAVCHGPS-GLVN 137 (224)
T ss_dssp HHHHHHHT-------TCEEEEETTGGG-GGTT
T ss_pred HHHHHHHC-------CCEEEEEChHHH-HHHH
Confidence 22333322 457888877765 4554
No 176
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=24.78 E-value=2.1e+02 Score=27.60 Aligned_cols=78 Identities=19% Similarity=0.125 Sum_probs=42.8
Q ss_pred CCCeEEEEEcCC-------C-CCCCchhhHHHhHHHHHHHcCCeEEEEE--eCCcchHHHHHHHhhhcCCCCCeEEEcCc
Q 003783 277 SPPKMLVILNPR-------S-GRGRSSKVFHDIVEPIFKLAGFKLEVVK--TTSAGHAKNLASTVDISSCPDGIICVGGD 346 (795)
Q Consensus 277 r~krllVIvNP~-------S-G~Gka~ki~~~~I~plL~~aGi~~~v~~--T~~~ghA~ela~~l~~~~~~D~IVvvGGD 346 (795)
++.|+.||.--. . |.-.. .....+..+|++.|+++..+. -+..+...+..+++.....+|.||+.||=
T Consensus 14 ~~~rv~IittGde~~~~~~~~G~i~D--sn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~ 91 (178)
T 2pjk_A 14 KSLNFYVITISTSRYEKLLKKEPIVD--ESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGT 91 (178)
T ss_dssp CCCEEEEEEECHHHHHHHHTTCCCCC--HHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCC
T ss_pred CCCEEEEEEeCcccccccccCCeEee--hHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 567777776432 2 33322 222467889999999865433 23333333333333222137999999984
Q ss_pred h-----HHHHHHHHH
Q 003783 347 G-----IINEVLNGL 356 (795)
Q Consensus 347 G-----TlnEVvNGL 356 (795)
| ...|++..+
T Consensus 92 s~g~~D~t~eal~~~ 106 (178)
T 2pjk_A 92 GYSPTDITVETIRKL 106 (178)
T ss_dssp SSSTTCCHHHHHGGG
T ss_pred CCCCCcchHHHHHHH
Confidence 4 344555444
No 177
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=24.52 E-value=39 Score=28.51 Aligned_cols=21 Identities=33% Similarity=0.721 Sum_probs=19.0
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003783 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
++|.|.+++.+++++|+++|.
T Consensus 81 r~~~l~a~s~~e~~~Wi~ai~ 101 (108)
T 1u5d_A 81 RTYEFTATSPAEARDWVDQIS 101 (108)
T ss_dssp CCEEEECSSHHHHHHHHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHH
Confidence 468899999999999999984
No 178
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=24.26 E-value=2.2e+02 Score=29.05 Aligned_cols=78 Identities=6% Similarity=-0.032 Sum_probs=48.0
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE--eCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003783 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK--TTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~--T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
..+|+.+|... . ..+.... +.++..|+++|+++.... .....+....++++... .+|+|++++-|...-.++.
T Consensus 150 g~~~ia~i~~~-~--~~~~~~~-~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~-~~dai~~~~~~~~a~~~~~ 224 (375)
T 4evq_A 150 GLKKAVTVTWK-Y--AAGEEMV-SGFKKSFTAGKGEVVKDITIAFPDVEFQSALAEIASL-KPDCVYAFFSGGGALKFIK 224 (375)
T ss_dssp TCCEEEEEEES-S--HHHHHHH-HHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHH-CCSEEEEECCTHHHHHHHH
T ss_pred CCcEEEEEecC-c--hHHHHHH-HHHHHHHHHcCCeEEEEEecCCCCccHHHHHHHHHhc-CCCEEEEecCcchHHHHHH
Confidence 34788888632 1 1222223 466778999998764322 22223334444544332 3799999899988888999
Q ss_pred HHHcC
Q 003783 355 GLLSR 359 (795)
Q Consensus 355 GL~~r 359 (795)
.+.+.
T Consensus 225 ~~~~~ 229 (375)
T 4evq_A 225 DYAAA 229 (375)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 88765
No 179
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=23.81 E-value=86 Score=31.06 Aligned_cols=89 Identities=15% Similarity=0.116 Sum_probs=50.1
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-chHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003783 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 276 ~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~-ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
++.+.+.||+.......-...++ ..++..+++.|+.+.+..+... ....++.+.+. ...+|+||+++-+..-.++..
T Consensus 9 ~~~~~Igvi~~~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~~~~~~~~ 86 (289)
T 3g85_A 9 QSKPTIALYWSSDISVNIISRFL-RGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISK-ENSFDAAIIANISNYDLEYLN 86 (289)
T ss_dssp --CCEEEEEEETTSCGGGHHHHH-HHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGST-TTCCSEEEESSCCHHHHHHHH
T ss_pred CCCceEEEEeccccchHHHHHHH-HHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHh-ccCCCEEEEecCCcccHHHHH
Confidence 46677888886222222222333 5677788889998877655432 22233444443 345899999998766533332
Q ss_pred HHHcCCCcccCCCccEEEee
Q 003783 355 GLLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 355 GL~~r~d~~~a~~iPLGIIP 374 (795)
+.. .++|+-++-
T Consensus 87 -~~~-------~~iPvV~~~ 98 (289)
T 3g85_A 87 -KAS-------LTLPIILFN 98 (289)
T ss_dssp -HCC-------CSSCEEEES
T ss_pred -hcc-------CCCCEEEEC
Confidence 222 257776653
No 180
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.80 E-value=36 Score=29.99 Aligned_cols=21 Identities=24% Similarity=0.623 Sum_probs=19.2
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003783 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
++|.|.+++.+++++|+++|+
T Consensus 80 r~~~l~a~s~~e~~~Wi~al~ 100 (120)
T 2d9x_A 80 EQYKLRATDAKERQHWVSRLQ 100 (120)
T ss_dssp CCEEECCSSHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHH
Confidence 569999999999999999995
No 181
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=23.60 E-value=46 Score=28.31 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=18.9
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003783 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
+.|.|.+++.+++++|+++|.
T Consensus 85 ~~~~l~a~s~~e~~~Wi~ai~ 105 (109)
T 2i5f_A 85 VHYFLQAATPKERTEWIKAIQ 105 (109)
T ss_dssp CEEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHH
Confidence 468999999999999999984
No 182
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=23.56 E-value=55 Score=28.79 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.7
Q ss_pred EeEEEEecCCHHHHHHHHHhhh
Q 003783 217 RKDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 217 ~~~~~f~~~~~~~a~~W~~~~~ 238 (795)
.++|.|.+++.+++.+|+++|.
T Consensus 85 ~~~~~~~a~s~~e~~~Wi~al~ 106 (125)
T 1unq_A 85 VIERTFHVETPEEREEWTTAIQ 106 (125)
T ss_dssp EEEEEEECSSHHHHHHHHHHHH
T ss_pred ceeEEEEeCCHHHHHHHHHHHH
Confidence 4678899999999999999995
No 183
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.52 E-value=40 Score=29.75 Aligned_cols=22 Identities=14% Similarity=0.301 Sum_probs=19.6
Q ss_pred eEEEEecCCHHHHHHHHHhhhc
Q 003783 218 KDYRFLASTTEEAIQWVGGFAD 239 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~~ 239 (795)
++|.|.+++.+++++|+++|..
T Consensus 80 r~~~l~a~s~~e~~~Wi~al~~ 101 (119)
T 2dhk_A 80 RVITLKAATKQAMLYWLQQLQM 101 (119)
T ss_dssp CCEEEECSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHH
Confidence 5689999999999999999953
No 184
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Probab=23.26 E-value=58 Score=28.91 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.5
Q ss_pred eEeEEEEecCCHHHHHHHHHhhh
Q 003783 216 VRKDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 216 ~~~~~~f~~~~~~~a~~W~~~~~ 238 (795)
..++|.|.+++.+++++|+++|+
T Consensus 102 ~~r~~~l~A~s~~e~~~Wi~al~ 124 (134)
T 2y7b_A 102 CVTKNWLSADTKEERDLWMQKLN 124 (134)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHH
T ss_pred ceEEEEEECCCHHHHHHHHHHHH
Confidence 35789999999999999999995
No 185
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=23.25 E-value=2.1e+02 Score=28.57 Aligned_cols=91 Identities=12% Similarity=0.097 Sum_probs=54.1
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-chHHHHHHHhhhc----CCCCCeEEEcCchHHHHH
Q 003783 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDIS----SCPDGIICVGGDGIINEV 352 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~-ghA~ela~~l~~~----~~~D~IVvvGGDGTlnEV 352 (795)
.+++.+|..+..- ......+ +-.+..|+++|+++.++..... ..+.+.++++... ..+|+| ++..|.+.-.+
T Consensus 131 ~~~I~~i~~~~~~-~~~~~R~-~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai-~~~~d~~A~g~ 207 (295)
T 3hcw_A 131 VDELIFITEKGNF-EVSKDRI-QGFETVASQFNLDYQIIETSNEREVILNYMQNLHTRLKDPNIKQAI-ISLDAMLHLAI 207 (295)
T ss_dssp CSEEEEEEESSCC-HHHHHHH-HHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHHTCTTSCEEE-EESSHHHHHHH
T ss_pred CccEEEEcCCccc-hhHHHHH-HHHHHHHHHcCCCeeEEeccCCHHHHHHHHHHHHhhcccCCCCcEE-EECChHHHHHH
Confidence 3678888765432 2222333 3466688899998876655433 3444555544221 135555 56889888889
Q ss_pred HHHHHcCCCcccCCCcc--EEEeecC
Q 003783 353 LNGLLSRGNQKEGISIP--IGIIPAG 376 (795)
Q Consensus 353 vNGL~~r~d~~~a~~iP--LGIIP~G 376 (795)
+++|.+.. .++| ++|+-.+
T Consensus 208 ~~al~~~g-----~~vP~di~vig~D 228 (295)
T 3hcw_A 208 LSVLYELN-----IEIPKDVMTATFN 228 (295)
T ss_dssp HHHHHHTT-----CCTTTTEEEEEEC
T ss_pred HHHHHHcC-----CCCCCceEEEEeC
Confidence 99987763 2344 6666554
No 186
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=23.22 E-value=2.3e+02 Score=28.73 Aligned_cols=41 Identities=15% Similarity=0.115 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCCCchhhHH-HhHHHHHHHcCCeEEEEEeC
Q 003783 278 PPKMLVILNPRSGRGRSSKVFH-DIVEPIFKLAGFKLEVVKTT 319 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~-~~I~plL~~aGi~~~v~~T~ 319 (795)
++|++||+-. .|.-.+...++ ......|+++|++++++-.+
T Consensus 23 ~kkV~ill~~-~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~ 64 (242)
T 3l3b_A 23 ALNSAVILAG-CGHMDGSEIREAVLVMLELDRHNVNFKCFAPN 64 (242)
T ss_dssp -CEEEEECCC-SSTTTSCCHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred cCEEEEEEec-CCCCCCeeHHHHHHHHHHHHHCCCEEEEEecC
Confidence 3788888741 12222222221 12234789999998876543
No 187
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=23.21 E-value=1.7e+02 Score=29.86 Aligned_cols=76 Identities=13% Similarity=0.193 Sum_probs=51.6
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHH
Q 003783 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL 356 (795)
..+++.||+||..... ....+.++..++..|+++.........+..+.++.+.. ..|+| .+..|+++...+..+
T Consensus 139 ~~k~vgvi~~~~~~~s---~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~l~~--~~d~i-~~~~d~~~~~~~~~i 212 (302)
T 3lkv_A 139 NVKSIGVVYNPGEANA---VSLMELLKLSAAKHGIKLVEATALKSADVQSATQAIAE--KSDVI-YALIDNTVASAIEGM 212 (302)
T ss_dssp TCCEEEEEECTTCHHH---HHHHHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHHT--TCSEE-EECSCHHHHHTHHHH
T ss_pred CCCEEEEEeCCCcccH---HHHHHHHHHHHHHcCCEEEEEecCChHHHHHHHHhccC--CeeEE-EEeCCcchhhHHHHH
Confidence 5689999999865322 22235677888899999877766667776666666542 34655 456798887766665
Q ss_pred Hc
Q 003783 357 LS 358 (795)
Q Consensus 357 ~~ 358 (795)
..
T Consensus 213 ~~ 214 (302)
T 3lkv_A 213 IV 214 (302)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 188
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=22.86 E-value=1.7e+02 Score=27.87 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=18.8
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003783 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
++|.|.++|.+|.++|+++|.
T Consensus 108 rt~yl~A~s~~E~~eWi~aI~ 128 (169)
T 1btk_A 108 GPLYVFSPTEELRKRWIHQLK 128 (169)
T ss_dssp CCEEEEESCHHHHHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHH
Confidence 468899999999999999995
No 189
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=22.86 E-value=1.4e+02 Score=29.89 Aligned_cols=90 Identities=12% Similarity=0.159 Sum_probs=50.6
Q ss_pred CCCCeEEEEEcCC----CCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcch-HHHHHHHhhhcCCCCCeEEEcCchHHH
Q 003783 276 KSPPKMLVILNPR----SGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGH-AKNLASTVDISSCPDGIICVGGDGIIN 350 (795)
Q Consensus 276 ~r~krllVIvNP~----SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~gh-A~ela~~l~~~~~~D~IVvvGGDGTln 350 (795)
++.+.+.||+.-. ....-...++ ..++..+++.|+.+.+..+..... ..++.+.+.. ..+|+||+++.+.+ .
T Consensus 20 ~~~~~Igvi~~~~~~~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~-~ 96 (305)
T 3huu_A 20 NKTLTIGLIQKSSAPEIRQNPFNSDVL-NGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQS-KSVDGFILLYSLKD-D 96 (305)
T ss_dssp -CCCEEEEECSCCSHHHHTSHHHHHHH-HHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHT-TCCSEEEESSCBTT-C
T ss_pred CCCCEEEEEeCCCccccccCcHHHHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh-CCCCEEEEeCCcCC-c
Confidence 3556666665431 1111112333 466778888898887765544322 2334444433 45899999987764 3
Q ss_pred HHHHHHHcCCCcccCCCccEEEeec
Q 003783 351 EVLNGLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 351 EVvNGL~~r~d~~~a~~iPLGIIP~ 375 (795)
+.+..|... .+|+-++-.
T Consensus 97 ~~~~~l~~~-------~iPvV~i~~ 114 (305)
T 3huu_A 97 PIEHLLNEF-------KVPYLIVGK 114 (305)
T ss_dssp HHHHHHHHT-------TCCEEEESC
T ss_pred HHHHHHHHc-------CCCEEEECC
Confidence 566666544 577766643
No 190
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=22.81 E-value=2e+02 Score=27.84 Aligned_cols=69 Identities=17% Similarity=0.167 Sum_probs=44.4
Q ss_pred HhHHHHHHHcCCeEEEEEeCCcchH---HHHHHHhhhcCC-CCCeEEEcCch-HHHHHHHHHHcCCCcccCCCccEEEee
Q 003783 300 DIVEPIFKLAGFKLEVVKTTSAGHA---KNLASTVDISSC-PDGIICVGGDG-IINEVLNGLLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~ghA---~ela~~l~~~~~-~D~IVvvGGDG-TlnEVvNGL~~r~d~~~a~~iPLGIIP 374 (795)
+.++..+++.|+++.+..+....+. .+..+.+... . +|+||+.+-|. ...+.+..+... ++|+-++-
T Consensus 20 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~-~~vdgii~~~~~~~~~~~~~~~~~~~-------~ipvV~~~ 91 (276)
T 3ksm_A 20 LGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQ-APPDALILAPNSAEDLTPSVAQYRAR-------NIPVLVVD 91 (276)
T ss_dssp HHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHH-SCCSEEEECCSSTTTTHHHHHHHHHT-------TCCEEEES
T ss_pred HHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHh-CCCCEEEEeCCCHHHHHHHHHHHHHC-------CCcEEEEe
Confidence 5677888889998877764332222 3344454333 4 79999999764 456677777654 57877764
Q ss_pred cC
Q 003783 375 AG 376 (795)
Q Consensus 375 ~G 376 (795)
..
T Consensus 92 ~~ 93 (276)
T 3ksm_A 92 SD 93 (276)
T ss_dssp SC
T ss_pred cC
Confidence 43
No 191
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=22.70 E-value=79 Score=33.15 Aligned_cols=96 Identities=11% Similarity=0.037 Sum_probs=55.0
Q ss_pred cEEEeccEEEEEEeccc-cccc-CCCCccCcCCCCCCCeEEEEEEcCcChHHHHHHHHHhccCCCCCCCceEEEEEEEEE
Q 003783 674 WIVKKGQYLGIMICNHA-CRTV-QSAQVVAPRAEYDDNTMDMLLVHGSGRLRLARFFLLLQMGRHLSLPYVEYVKVKSVK 751 (795)
Q Consensus 674 W~~ieG~Fv~v~v~N~~-~~~~-~~d~~lAP~A~l~DG~LDLvlV~~~sR~~Ll~~l~~~~~G~hl~~P~V~~ikvka~r 751 (795)
...+.++-|.|...|.+ .|.. +....++|.+ |++++...... ...++ |.| +-+.+.++
T Consensus 183 ~~~~~~dGlivsTptGSTaY~lSaGGpiv~P~~-------~~~~l~pi~p~--------~l~~r----p~v-~~~~~~i~ 242 (307)
T 1u0t_A 183 VSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDL-------EAILVVPNNAH--------ALFGR----PMV-TSPEATIA 242 (307)
T ss_dssp EEEEEESEEEEECTGGGGTHHHHTTCCEECTTC-------CCEEEEEESCS--------SSCCC----CEE-ECTTCCEE
T ss_pred EEEEcCCEEEEccchhhHHHHhcCCCCccCCCC-------CeEEEEeecCc--------cccCC----CEE-ECCCCEEE
Confidence 45567887777655655 2111 2344788877 45555433210 11122 433 22345566
Q ss_pred EEecC-CCCCceeecCcee-ec--CeeEEEeeeccccccccc
Q 003783 752 IKAGK-HTHNSCGIDGELF-PL--NGQVISSLLPEQCRLIGR 789 (795)
Q Consensus 752 Iep~~-~~~~~i~VDGE~i-p~--~~~V~~~vlP~~~rlig~ 789 (795)
|+... ..+..+.+|||.. ++ ..++.+++.|..++|+--
T Consensus 243 i~v~~~~~~~~~~~DG~~~~~l~~g~~i~i~~~~~~~~li~~ 284 (307)
T 1u0t_A 243 IEIEADGHDALVFCDGRREMLIPAGSRLEVTRCVTSVKWARL 284 (307)
T ss_dssp EEECTTSCCEEEEETTTEEEEECTTCEEEEEECSSCEEEEEC
T ss_pred EEEecCCCCEEEEECCCeEEecCCCCEEEEEECCCeeEEEEe
Confidence 55431 2345689999975 43 347999999999999853
No 192
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=22.54 E-value=2e+02 Score=25.04 Aligned_cols=69 Identities=9% Similarity=0.123 Sum_probs=39.3
Q ss_pred HhHHHHHHHcCCeE-EEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchH---HHHHHHHHHcCCCcccCCCccEEEeec
Q 003783 300 DIVEPIFKLAGFKL-EVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGI---INEVLNGLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 300 ~~I~plL~~aGi~~-~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGT---lnEVvNGL~~r~d~~~a~~iPLGIIP~ 375 (795)
+.++.+++..|+.+ ..... ...-+.++.+.+... .+|.||+..--|. +..+...++... .+|+-++|.
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~-~g~~~~~I~~~a~~~-~~dliV~G~~~~~~~~lgs~~~~vl~~~------~~pVlvv~~ 138 (141)
T 1jmv_A 67 KALLDLAESVDYPISEKLSG-SGDLGQVLSDAIEQY-DVDLLVTGHHQDFWSKLMSSTRQVMNTI------KIDMLVVPL 138 (141)
T ss_dssp HHHHHHHHHSSSCCCCEEEE-EECHHHHHHHHHHHT-TCCEEEEEECCCCHHHHHHHHHHHHTTC------CSEEEEEEC
T ss_pred HHHHHHHHHcCCCceEEEEe-cCCHHHHHHHHHHhc-CCCEEEEeCCCchhhhhcchHHHHHhcC------CCCEEEeeC
Confidence 45666677778765 22222 223445566555433 4687776533222 345666676652 589999986
Q ss_pred C
Q 003783 376 G 376 (795)
Q Consensus 376 G 376 (795)
+
T Consensus 139 ~ 139 (141)
T 1jmv_A 139 R 139 (141)
T ss_dssp C
T ss_pred C
Confidence 4
No 193
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=22.53 E-value=50 Score=30.10 Aligned_cols=21 Identities=19% Similarity=0.477 Sum_probs=19.4
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003783 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
++|.|.++|.++.+.|+++|+
T Consensus 96 r~y~l~A~s~~e~~~Wi~al~ 116 (126)
T 1v5p_A 96 QRYFLQANDQKDLKDWVEALN 116 (126)
T ss_dssp CEEEEECSSHHHHHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHH
Confidence 579999999999999999995
No 194
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=22.51 E-value=2.2e+02 Score=30.15 Aligned_cols=85 Identities=19% Similarity=0.250 Sum_probs=54.9
Q ss_pred EEEcCCC-CCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCch-------------H
Q 003783 283 VILNPRS-GRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDG-------------I 348 (795)
Q Consensus 283 VIvNP~S-G~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDG-------------T 348 (795)
+.++|.. .-+++..+. +.+ ..|...|++.-++.+...+.+.++++.. .+=|+-|||| |
T Consensus 66 i~l~~~~ss~~kgEsl~-DTa-rvLs~~~~D~iviR~~~~~~~~~la~~~------~vPVINagdg~~~HPtQaLaDl~T 137 (304)
T 3r7f_A 66 LNLDGTSTSVQKGETLY-DTI-RTLESIGVDVCVIRHSEDEYYEELVSQV------NIPILNAGDGCGQHPTQSLLDLMT 137 (304)
T ss_dssp EEEETTSTTSCSSSCHH-HHH-HHHHHHTCCEEEEECSSTTCHHHHHHHC------SSCEEESCCTTSCCHHHHHHHHHH
T ss_pred EEECcccccCCCCCCHH-HHH-HHHHHhcCCEEEEecCChhHHHHHHHhC------CCCEEeCCCCCCcCcHHHHHHHHH
Confidence 3347743 334444433 444 4888887888888888888778887642 4558889988 3
Q ss_pred HHHHHHHHHcCCCcccCCCccEEEeecCCcchhhhh
Q 003783 349 INEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (795)
Q Consensus 349 lnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArs 384 (795)
|.|-.. + ..++.++++--|.-|..|++
T Consensus 138 i~e~~g----~-----l~glkva~vGD~~~~rva~S 164 (304)
T 3r7f_A 138 IYEEFN----T-----FKGLTVSIHGDIKHSRVARS 164 (304)
T ss_dssp HHHHHS----C-----CTTCEEEEESCCTTCHHHHH
T ss_pred HHHHhC----C-----CCCCEEEEEcCCCCcchHHH
Confidence 444321 1 23578999877766778877
No 195
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.38 E-value=51 Score=28.69 Aligned_cols=21 Identities=29% Similarity=0.626 Sum_probs=19.2
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003783 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
++|.|.+++.+++++|+++|.
T Consensus 96 r~~~l~a~s~~e~~~Wi~al~ 116 (122)
T 2yry_A 96 RTYFFSAESPEEQEAWIQAMG 116 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHH
Confidence 568999999999999999985
No 196
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=22.33 E-value=2.5e+02 Score=26.17 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=49.6
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHc
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLS 358 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~ 358 (795)
+++..|.|+++|-|+..-. ..+...|.+.|.++-++-.+..+....+... . ....=++.++...+.+.+..+..
T Consensus 1 M~vi~v~s~kgG~GKTt~a--~~la~~la~~g~~vlliD~D~~~~~~~~~~~---~-~~~~~~~~~~~~~l~~~l~~l~~ 74 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAV--INIATALSRSGYNIAVVDTDPQMSLTNWSKA---G-KAAFDVFTAASEKDVYGIRKDLA 74 (206)
T ss_dssp CEEEEECCSSTTSSHHHHH--HHHHHHHHHTTCCEEEEECCTTCHHHHHHTT---S-CCSSEEEECCSHHHHHTHHHHTT
T ss_pred CeEEEEEeCCCCccHHHHH--HHHHHHHHHCCCeEEEEECCCCCCHHHHHhc---C-CCCCcEEecCcHHHHHHHHHhcC
Confidence 4788999999999987533 3577788889999989888877766554432 1 11233444455666666666543
No 197
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=22.22 E-value=44 Score=29.37 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=19.4
Q ss_pred eEEEEecCCHHHHHHHHHhhhc
Q 003783 218 KDYRFLASTTEEAIQWVGGFAD 239 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~~ 239 (795)
++|.|.+++.+++++|+++|..
T Consensus 95 r~~~l~a~s~~e~~~Wi~al~~ 116 (128)
T 2dkp_A 95 RTYYFCTDTGKEMELWMKAMLD 116 (128)
T ss_dssp CCEEEECSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHH
Confidence 4688999999999999999953
No 198
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=22.05 E-value=2.3e+02 Score=27.40 Aligned_cols=66 Identities=12% Similarity=0.163 Sum_probs=38.2
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCch
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDG 347 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDG 347 (795)
+.+.||+.-. ...-...++ ..++..+++.|+.+.+..+.... ...++.+.+.. ..+|+||+++.+.
T Consensus 3 ~~Igvi~~~~-~~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~ 69 (255)
T 1byk_A 3 KVVAIIVTRL-DSLSENLAV-QTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKR-RNIDGVVLFGFTG 69 (255)
T ss_dssp CEEEEEESCT-TCHHHHHHH-HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHT-TTCCEEEEECCTT
T ss_pred CEEEEEeCCC-CCccHHHHH-HHHHHHHHHcCCEEEEEeCCCcHHHHHHHHHHHHh-cCCCEEEEecCcc
Confidence 4566776432 211112233 45677888899988777665322 22344555543 4589999998653
No 199
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=22.01 E-value=3.2e+02 Score=28.22 Aligned_cols=77 Identities=9% Similarity=0.119 Sum_probs=49.2
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe--CCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHH
Q 003783 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT--TSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T--~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNG 355 (795)
.+|+.+|+.... -+.... +.++..|+++|+++..... ....+....+.++... .+|+|++++.|.....++..
T Consensus 143 ~~~iaii~~~~~---~g~~~~-~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~-~~dav~~~~~~~~a~~~~~~ 217 (392)
T 3lkb_A 143 GAKVALVVHPSP---FGRAPV-EDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQA-GVEYVVHQNVAGPVANILKD 217 (392)
T ss_dssp TCEEEEEECSSH---HHHTTH-HHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHT-TCCEEEEESCHHHHHHHHHH
T ss_pred CCEEEEEEeCCc---hhhhHH-HHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHHhc-CCCEEEEecCcchHHHHHHH
Confidence 478998885422 122223 4567788899988654332 2222344455555433 47999999999888889988
Q ss_pred HHcC
Q 003783 356 LLSR 359 (795)
Q Consensus 356 L~~r 359 (795)
+.+.
T Consensus 218 ~~~~ 221 (392)
T 3lkb_A 218 AKRL 221 (392)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8765
No 200
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=22.01 E-value=98 Score=31.21 Aligned_cols=43 Identities=23% Similarity=0.401 Sum_probs=30.3
Q ss_pred HHHHHHHhhhcCCCCCeEEEcCc-hHHHHHHHHHHcCCCcccCCCccEEEee
Q 003783 324 AKNLASTVDISSCPDGIICVGGD-GIINEVLNGLLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 324 A~ela~~l~~~~~~D~IVvvGGD-GTlnEVvNGL~~r~d~~~a~~iPLGIIP 374 (795)
|+++++.+...+ -.||.-||. |..-.+..|.+... ...+||+|
T Consensus 30 A~~lg~~LA~~g--~~lV~GGg~~GlM~aa~~gA~~~G------G~~iGv~p 73 (216)
T 1ydh_A 30 AIELGNELVKRK--IDLVYGGGSVGLMGLISRRVYEGG------LHVLGIIP 73 (216)
T ss_dssp HHHHHHHHHHTT--CEEEECCCSSHHHHHHHHHHHHTT------CCEEEEEE
T ss_pred HHHHHHHHHHCC--CEEEECCCcccHhHHHHHHHHHcC------CcEEEEec
Confidence 455666665432 356666677 99999999987653 57899999
No 201
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=21.78 E-value=2.5e+02 Score=27.51 Aligned_cols=66 Identities=11% Similarity=0.092 Sum_probs=39.4
Q ss_pred HhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCchH-HHHHHHHHHcCCCcccCCCccEEEe
Q 003783 300 DIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDGT-lnEVvNGL~~r~d~~~a~~iPLGII 373 (795)
..++..+++.|+.+.+..+.... ...+..+.+. ...+|+||+++.|.. +.+.+..+... .+|+-++
T Consensus 21 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~~~~~~~~~~~~~~~~-------~iPvV~i 88 (271)
T 2dri_A 21 DGAQKEADKLGYNLVVLDSQNNPAKELANVQDLT-VRGTKILLINPTDSDAVGNAVKMANQA-------NIPVITL 88 (271)
T ss_dssp HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHT-TTTEEEEEECCSSTTTTHHHHHHHHHT-------TCCEEEE
T ss_pred HHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEeCCChHHHHHHHHHHHHC-------CCcEEEe
Confidence 45677888889888766554322 1223344443 335799999887643 23455555443 4777666
No 202
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=21.44 E-value=1.2e+02 Score=29.60 Aligned_cols=45 Identities=22% Similarity=0.430 Sum_probs=31.4
Q ss_pred HHHHHHHhhhcCCCCCeEEEcC-chHHHHHHHHHHcCCCcccCCCccEEEeecC
Q 003783 324 AKNLASTVDISSCPDGIICVGG-DGIINEVLNGLLSRGNQKEGISIPIGIIPAG 376 (795)
Q Consensus 324 A~ela~~l~~~~~~D~IVvvGG-DGTlnEVvNGL~~r~d~~~a~~iPLGIIP~G 376 (795)
|+++++.+...+ -.||.-|| -|..-.+..+.++.. ...+||||..
T Consensus 34 A~~lg~~La~~g--~~lVsGGg~~Gim~aa~~gAl~~g------G~tigVlP~~ 79 (176)
T 2iz6_A 34 ANELGKQIATHG--WILLTGGRSLGVMHEAMKGAKEAG------GTTIGVLPGP 79 (176)
T ss_dssp HHHHHHHHHHTT--CEEEEECSSSSHHHHHHHHHHHTT------CCEEEEECC-
T ss_pred HHHHHHHHHHCC--CEEEECCCccCHhHHHHHHHHHcC------CEEEEEeCch
Confidence 455666665432 35666677 799999999988753 4689999976
No 203
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=21.42 E-value=90 Score=33.33 Aligned_cols=40 Identities=25% Similarity=0.421 Sum_probs=32.1
Q ss_pred CCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeecCCcchhhh
Q 003783 336 CPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVW 383 (795)
Q Consensus 336 ~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfAr 383 (795)
..|.+|++|||||+.-+ +.|.+. .+|+--||.==-||+.-
T Consensus 93 ~Id~L~~IGGdgS~~~a-~~l~~~-------~i~vigiPkTIDNDl~~ 132 (319)
T 4a3s_A 93 GIEGLVVIGGDGSYMGA-KKLTEH-------GFPCVGVPGTIDNDIPG 132 (319)
T ss_dssp TCCEEEEEECTTHHHHH-HHHHHT-------TCCEEEEEEETTCCCTT
T ss_pred CCCEEEEeCCcHHHHHH-HHHhcc-------CCcEEEeeccccCCCCC
Confidence 37999999999998764 556553 58899999988899874
No 204
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=21.35 E-value=3.2e+02 Score=26.98 Aligned_cols=85 Identities=14% Similarity=0.034 Sum_probs=45.7
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc--hHHHHHHHhhhcCCCCCeEEEcCchH-HHHHHHH
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG--HAKNLASTVDISSCPDGIICVGGDGI-INEVLNG 355 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g--hA~ela~~l~~~~~~D~IVvvGGDGT-lnEVvNG 355 (795)
+++.|++ |..+..-...++ +-++..+++.|+++.++.....+ ...+..+.+.. ..+|+||+++.|.. +.+++..
T Consensus 5 ~~Ig~i~-~~~~~~~~~~~~-~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiii~~~~~~~~~~~~~~ 81 (303)
T 3d02_A 5 KTVVNIS-KVDGMPWFNRMG-EGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIA-RKVDAITIVPNDANVLEPVFKK 81 (303)
T ss_dssp EEEEEEC-SCSSCHHHHHHH-HHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHH-TTCSEEEECCSCHHHHHHHHHH
T ss_pred eEEEEEe-ccCCChHHHHHH-HHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHH-cCCCEEEEecCChHHHHHHHHH
Confidence 3455554 444322222222 45677788888776543322222 22334455433 35899999988764 3455565
Q ss_pred HHcCCCcccCCCccEEEe
Q 003783 356 LLSRGNQKEGISIPIGII 373 (795)
Q Consensus 356 L~~r~d~~~a~~iPLGII 373 (795)
+... ++|+-.+
T Consensus 82 ~~~~-------~ipvV~~ 92 (303)
T 3d02_A 82 ARDA-------GIVVLTN 92 (303)
T ss_dssp HHHT-------TCEEEEE
T ss_pred HHHC-------CCeEEEE
Confidence 5443 4777665
No 205
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=21.33 E-value=1.3e+02 Score=36.87 Aligned_cols=59 Identities=25% Similarity=0.250 Sum_probs=39.1
Q ss_pred HHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeecCCcchhhhh
Q 003783 324 AKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (795)
Q Consensus 324 A~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArs 384 (795)
..++++.+... +.|.+|++|||||+.-+ +.|.+.........+|+--||.==-||+.-+
T Consensus 651 ~~~i~~~l~~~-~Id~LvvIGGdgS~~~a-~~L~~~~~~~~~~~i~vVGIPkTIDNDl~gT 709 (941)
T 3opy_B 651 IGMIAYFFEKY-GFDGLILVGGFEAFISL-HQLERARINYPSLRIPLVLIPATISNNVPGT 709 (941)
T ss_dssp HHHHHHHHHHT-TCSEEEEEESHHHHHHH-HHHHHGGGTCGGGCSCEEEEEBCSSCCCTTC
T ss_pred HHHHHHHHHHc-CCCEEEEeCCchHHHHH-HHHHHHHHhcCccCCcEEeeeccccCCCCCC
Confidence 34566665443 47999999999998654 4454321100113689999999889999754
No 206
>4eys_A MCCC family protein; MCCF like, serine peptidase, csgid, structural genomics, NIA national institute of allergy and infectious diseases; HET: AMP; 1.58A {Streptococcus pneumoniae} PDB: 4e94_A*
Probab=21.06 E-value=1.1e+02 Score=32.76 Aligned_cols=74 Identities=22% Similarity=0.264 Sum_probs=42.4
Q ss_pred eEEEEEcCCCCCCC---chhhHHHhHHHHHHHcCCeEEEEEeCCcc----------hHHHHHHHhhhcCCCCCeEEE-cC
Q 003783 280 KMLVILNPRSGRGR---SSKVFHDIVEPIFKLAGFKLEVVKTTSAG----------HAKNLASTVDISSCPDGIICV-GG 345 (795)
Q Consensus 280 rllVIvNP~SG~Gk---a~ki~~~~I~plL~~aGi~~~v~~T~~~g----------hA~ela~~l~~~~~~D~IVvv-GG 345 (795)
.-.-|+-|.++-.. ....++ .....|+..|+++.+..+-... .|.++.+.+. +...++|+|+ ||
T Consensus 6 D~I~ivaPSs~~~~~~~~~~~~~-~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~-Dp~i~aI~~~rGG 83 (346)
T 4eys_A 6 STIGIVSLSSGIIGEDFVKHEVD-LGIQRLKDLGLNPIFLPHSLKGLDFIKDHPEARAEDLIHAFS-DDSIDMILCAIGG 83 (346)
T ss_dssp CEEEEECSSCCGGGSGGGHHHHH-HHHHHHHHTTCEEEECTTTTSCHHHHHHCHHHHHHHHHHHHH-CTTCCEEEECCCC
T ss_pred cEEEEEeCCCcccccccCHHHHH-HHHHHHHhCCCEEEECCchhccCCccCCCHHHHHHHHHHHhh-CCCCCEEEEcccc
Confidence 45667889887531 123343 4445889999988765443322 2333333333 2346777665 99
Q ss_pred chHHHHHHHHH
Q 003783 346 DGIINEVLNGL 356 (795)
Q Consensus 346 DGTlnEVvNGL 356 (795)
+|+.. ++..|
T Consensus 84 ~g~~r-lLp~L 93 (346)
T 4eys_A 84 DDTYR-LLPYL 93 (346)
T ss_dssp SCGGG-GHHHH
T ss_pred cCHHH-HHHHh
Confidence 99865 44444
No 207
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=21.05 E-value=1.8e+02 Score=28.60 Aligned_cols=83 Identities=12% Similarity=0.094 Sum_probs=0.0
Q ss_pred cCCCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHH
Q 003783 274 RCKSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVL 353 (795)
Q Consensus 274 ~~~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVv 353 (795)
+.++.+++.||+ |.....-...++ +.++..+++.|+.+.+..+........-. .+|+||+++.+-+ .+.+
T Consensus 4 ~~~~~~~Igvi~-~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~-------~vdgiI~~~~~~~-~~~~ 73 (277)
T 3cs3_A 4 KRRQTNIIGVYL-ADYGGSFYGELL-EGIKKGLALFDYEMIVCSGKKSHLFIPEK-------MVDGAIILDWTFP-TKEI 73 (277)
T ss_dssp CCCCCCEEEEEE-CSSCTTTHHHHH-HHHHHHHHTTTCEEEEEESTTTTTCCCTT-------TCSEEEEECTTSC-HHHH
T ss_pred cccCCcEEEEEe-cCCCChhHHHHH-HHHHHHHHHCCCeEEEEeCCCCHHHHhhc-------cccEEEEecCCCC-HHHH
Q ss_pred HHHHcCCCcccCCCccEEEe
Q 003783 354 NGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 354 NGL~~r~d~~~a~~iPLGII 373 (795)
..|... ++|+-.+
T Consensus 74 ~~l~~~-------~iPvV~~ 86 (277)
T 3cs3_A 74 EKFAER-------GHSIVVL 86 (277)
T ss_dssp HHHHHT-------TCEEEES
T ss_pred HHHHhc-------CCCEEEE
No 208
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=20.86 E-value=1.9e+02 Score=28.89 Aligned_cols=68 Identities=15% Similarity=0.233 Sum_probs=35.5
Q ss_pred CCCeEEEEEcCCCC-CCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHH
Q 003783 277 SPPKMLVILNPRSG-RGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (795)
Q Consensus 277 r~krllVIvNP~SG-~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNG 355 (795)
..+|++|| |.+. .... .-+...+...|+..|+++ ..+....+.. +.+. ..|+|++-||+ ....+..
T Consensus 30 ~~~~i~iI--~~a~~~~~~-~~~~~~~~~al~~lG~~~--~~v~~~~d~~---~~l~---~ad~I~lpGG~--~~~~~~~ 96 (229)
T 1fy2_A 30 GRRSAVFI--PFAGVTQTW-DEYTDKTAEVLAPLGVNV--TGIHRVADPL---AAIE---KAEIIIVGGGN--TFQLLKE 96 (229)
T ss_dssp TCCEEEEE--CTTCCSSCH-HHHHHHHHHHHGGGTCEE--EETTSSSCHH---HHHH---HCSEEEECCSC--HHHHHHH
T ss_pred CCCeEEEE--ECCCCCCCH-HHHHHHHHHHHHHCCCEE--EEEeccccHH---HHHh---cCCEEEECCCc--HHHHHHH
Confidence 44677766 5553 2222 233356778899989754 3443222322 2232 14877777755 3344444
Q ss_pred HH
Q 003783 356 LL 357 (795)
Q Consensus 356 L~ 357 (795)
|.
T Consensus 97 l~ 98 (229)
T 1fy2_A 97 SR 98 (229)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 209
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=20.74 E-value=1.1e+02 Score=30.57 Aligned_cols=45 Identities=20% Similarity=0.435 Sum_probs=31.0
Q ss_pred HHHHHHHhhhcCCCCCeEEEcCc-hHHHHHHHHHHcCCCcccCCCccEEEeecC
Q 003783 324 AKNLASTVDISSCPDGIICVGGD-GIINEVLNGLLSRGNQKEGISIPIGIIPAG 376 (795)
Q Consensus 324 A~ela~~l~~~~~~D~IVvvGGD-GTlnEVvNGL~~r~d~~~a~~iPLGIIP~G 376 (795)
|+++++.+...+ -.||.-||. |..-.+..|.+... ...+||+|-.
T Consensus 42 A~~lg~~La~~g--~~lV~GGG~~GlM~a~~~gA~~~G------G~viGv~p~~ 87 (199)
T 3qua_A 42 AAEVGSSIAARG--WTLVSGGGNVSAMGAVAQAARAKG------GHTVGVIPKA 87 (199)
T ss_dssp HHHHHHHHHHTT--CEEEECCBCSHHHHHHHHHHHHTT------CCEEEEEEGG
T ss_pred HHHHHHHHHHCC--CEEEECCCccCHHHHHHHHHHHcC------CcEEEEeCch
Confidence 455666665422 245555676 99999999988753 5789999974
No 210
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=20.38 E-value=1.3e+02 Score=30.81 Aligned_cols=77 Identities=13% Similarity=0.032 Sum_probs=0.0
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEE-EeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHH
Q 003783 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVV-KTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLL 357 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~-~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~ 357 (795)
+++.+|+.+....+.... +.++..|++.|+++... ......+....++++...+ +|+|++++-|.....++..+.
T Consensus 150 ~~iaii~~~~~~~~~~~~---~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~~~-~d~v~~~~~~~~a~~~~~~~~ 225 (366)
T 3td9_A 150 KRVVVFTDVEQDYSVGLS---NFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMSFN-PDAIYITGYYPEIALISRQAR 225 (366)
T ss_dssp CEEEEEEETTCHHHHHHH---HHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHHTC-CSEEEECSCHHHHHHHHHHHH
T ss_pred cEEEEEEeCCCcHHHHHH---HHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHhcC-CCEEEEccchhHHHHHHHHHH
Q ss_pred cC
Q 003783 358 SR 359 (795)
Q Consensus 358 ~r 359 (795)
+.
T Consensus 226 ~~ 227 (366)
T 3td9_A 226 QL 227 (366)
T ss_dssp HT
T ss_pred Hc
No 211
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=20.37 E-value=1.1e+02 Score=31.94 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=22.3
Q ss_pred CCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeec
Q 003783 337 PDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 337 ~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~ 375 (795)
.|.+|+.|| +|+.|++-. .+|.-+||.
T Consensus 226 aDlvI~~gG-~T~~E~~~~-----------g~P~i~ip~ 252 (282)
T 3hbm_A 226 SNKLIISAS-SLVNEALLL-----------KANFKAICY 252 (282)
T ss_dssp EEEEEEESS-HHHHHHHHT-----------TCCEEEECC
T ss_pred CCEEEECCc-HHHHHHHHc-----------CCCEEEEeC
Confidence 489999999 999998642 578888885
No 212
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=20.13 E-value=91 Score=33.14 Aligned_cols=69 Identities=16% Similarity=0.264 Sum_probs=39.9
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC------cc----hHHHHHHHhhhcCCCCCeE-EEcCc
Q 003783 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS------AG----HAKNLASTVDISSCPDGII-CVGGD 346 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~------~g----hA~ela~~l~~~~~~D~IV-vvGGD 346 (795)
+....-|+.|.++-. ...+ +.....|+..|+++.+-.+-. ++ .|.++.+.+.. ...|+|+ +.||+
T Consensus 16 ~Gd~I~ivaPSs~~~--~~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~D-p~i~aI~~~rGGy 91 (311)
T 1zl0_A 16 IDGRVALIAPASAIA--TDVL-EATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDM-PDITAVWCLRGGY 91 (311)
T ss_dssp CCSEEEEECCSBCCC--HHHH-HHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHS-TTEEEEEESCCSS
T ss_pred CcCEEEEEeCCCCCC--HHHH-HHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhC-CCCCEEEEccCCc
Confidence 344567789988754 3344 455668999998886543221 22 33444444332 2346554 45899
Q ss_pred hHHH
Q 003783 347 GIIN 350 (795)
Q Consensus 347 GTln 350 (795)
|+.+
T Consensus 92 ga~r 95 (311)
T 1zl0_A 92 GCGQ 95 (311)
T ss_dssp CGGG
T ss_pred CHHH
Confidence 9854
Done!