Query 003784
Match_columns 795
No_of_seqs 372 out of 2906
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 11:58:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003784.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003784hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100 Molecular chaperones G 100.0 5E-122 1E-126 935.2 58.7 625 1-752 1-644 (663)
2 KOG0104 Molecular chaperones G 100.0 1E-105 3E-110 871.5 62.6 751 1-776 1-762 (902)
3 KOG0103 Molecular chaperones H 100.0 8E-103 2E-107 849.6 56.0 663 24-775 1-670 (727)
4 PTZ00009 heat shock 70 kDa pro 100.0 1.7E-98 4E-103 878.1 72.0 603 22-751 2-614 (653)
5 PRK13410 molecular chaperone D 100.0 1.3E-97 3E-102 866.5 69.3 610 24-768 2-622 (668)
6 PRK13411 molecular chaperone D 100.0 2.4E-96 5E-101 858.8 71.9 591 24-751 2-601 (653)
7 PTZ00400 DnaK-type molecular c 100.0 3.2E-96 7E-101 858.0 71.2 590 21-749 38-636 (663)
8 PRK00290 dnaK molecular chaper 100.0 2E-94 4.3E-99 844.3 72.6 587 24-751 2-597 (627)
9 PLN03184 chloroplast Hsp70; Pr 100.0 2.9E-94 6.3E-99 841.6 71.2 589 23-751 38-636 (673)
10 PTZ00186 heat shock 70 kDa pre 100.0 4.2E-94 9.2E-99 832.9 70.2 591 23-750 26-624 (657)
11 TIGR02350 prok_dnaK chaperone 100.0 3.5E-93 7.5E-98 831.7 70.6 584 25-749 1-593 (595)
12 CHL00094 dnaK heat shock prote 100.0 5.2E-93 1.1E-97 829.5 70.5 588 24-751 2-599 (621)
13 TIGR01991 HscA Fe-S protein as 100.0 1.7E-90 3.6E-95 803.2 71.3 577 26-748 1-582 (599)
14 KOG0101 Molecular chaperones H 100.0 1.7E-92 3.8E-97 780.2 48.2 604 20-752 3-615 (620)
15 PRK05183 hscA chaperone protei 100.0 4.2E-89 9.1E-94 792.9 69.6 577 24-749 19-599 (616)
16 PF00012 HSP70: Hsp70 protein; 100.0 5E-89 1.1E-93 804.5 63.6 591 26-750 1-601 (602)
17 PRK01433 hscA chaperone protei 100.0 2.9E-84 6.2E-89 745.3 66.1 556 24-750 19-579 (595)
18 KOG0102 Molecular chaperones m 100.0 5.1E-85 1.1E-89 689.8 44.9 594 21-750 24-626 (640)
19 COG0443 DnaK Molecular chapero 100.0 8E-82 1.7E-86 720.7 59.2 569 23-750 4-577 (579)
20 PRK11678 putative chaperone; P 100.0 7E-54 1.5E-58 477.2 37.7 346 26-417 2-448 (450)
21 PRK13928 rod shape-determining 100.0 3.4E-37 7.4E-42 335.9 33.5 307 27-417 6-324 (336)
22 PRK13929 rod-share determining 100.0 1.2E-36 2.6E-41 330.5 32.6 307 24-414 4-324 (335)
23 PRK13927 rod shape-determining 100.0 4.1E-34 9E-39 312.1 33.8 309 24-417 5-325 (334)
24 TIGR00904 mreB cell shape dete 100.0 5.7E-34 1.2E-38 310.4 31.9 307 26-416 4-327 (333)
25 PRK13930 rod shape-determining 100.0 5.8E-33 1.3E-37 303.4 32.8 308 26-417 10-329 (335)
26 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 3.7E-29 8.1E-34 265.3 26.5 307 25-415 2-320 (326)
27 TIGR02529 EutJ ethanolamine ut 100.0 4E-28 8.6E-33 250.0 24.4 201 138-412 38-238 (239)
28 COG1077 MreB Actin-like ATPase 100.0 8.2E-26 1.8E-30 229.6 28.9 311 24-418 6-333 (342)
29 PRK15080 ethanolamine utilizat 99.9 8.5E-25 1.8E-29 229.3 30.6 202 139-414 66-267 (267)
30 TIGR01174 ftsA cell division p 99.9 1.4E-20 3.1E-25 208.2 27.5 196 174-413 157-371 (371)
31 PRK09472 ftsA cell division pr 99.8 9.4E-19 2E-23 195.9 31.0 197 177-416 168-388 (420)
32 COG0849 ftsA Cell division ATP 99.7 1.5E-14 3.3E-19 157.7 28.3 207 164-417 158-381 (418)
33 cd00012 ACTIN Actin; An ubiqui 99.6 1.4E-14 3.1E-19 160.6 17.6 238 140-416 75-347 (371)
34 PRK13917 plasmid segregation p 99.6 7.8E-13 1.7E-17 144.0 25.3 207 164-419 115-339 (344)
35 smart00268 ACTIN Actin. ACTIN 99.5 1.9E-13 4.2E-18 151.7 17.2 238 140-416 75-347 (373)
36 COG4820 EutJ Ethanolamine util 99.5 1.8E-13 3.9E-18 129.4 9.7 194 144-411 76-269 (277)
37 PTZ00280 Actin-related protein 99.4 6.2E-11 1.4E-15 133.1 23.6 226 140-393 82-338 (414)
38 TIGR03739 PRTRC_D PRTRC system 99.3 1.8E-10 3.9E-15 124.8 21.4 208 160-414 101-318 (320)
39 PF00022 Actin: Actin; InterP 99.3 6.8E-11 1.5E-15 132.4 17.8 312 24-416 4-367 (393)
40 PTZ00452 actin; Provisional 99.1 2.7E-09 5.9E-14 117.9 20.9 235 141-416 81-349 (375)
41 TIGR01175 pilM type IV pilus a 99.1 2.8E-08 6.1E-13 109.4 28.5 161 174-393 142-308 (348)
42 PTZ00004 actin-2; Provisional 99.1 1.9E-09 4.2E-14 119.6 17.6 235 140-415 81-351 (378)
43 PTZ00281 actin; Provisional 99.1 1.7E-09 3.6E-14 119.9 16.5 238 141-416 82-350 (376)
44 PTZ00466 actin-like protein; P 99.1 5.1E-09 1.1E-13 115.9 18.2 236 141-416 88-354 (380)
45 PF11104 PilM_2: Type IV pilus 99.0 7.3E-08 1.6E-12 105.5 25.5 182 174-414 135-339 (340)
46 PF06406 StbA: StbA protein; 98.8 1.3E-07 2.8E-12 102.3 18.2 173 191-411 142-316 (318)
47 COG5277 Actin and related prot 98.5 3.3E-06 7.1E-11 94.3 18.9 192 27-279 9-204 (444)
48 KOG0679 Actin-related protein 98.4 1.5E-05 3.2E-10 83.8 19.3 116 140-279 86-202 (426)
49 PRK10719 eutA reactivating fac 98.3 4E-05 8.6E-10 84.3 20.6 272 25-417 7-296 (475)
50 COG4972 PilM Tfp pilus assembl 98.3 0.00018 3.9E-09 74.8 22.8 160 177-393 151-313 (354)
51 PF07520 SrfB: Virulence facto 98.3 0.00017 3.7E-09 85.6 24.6 274 135-418 416-836 (1002)
52 TIGR03192 benz_CoA_bzdQ benzoy 98.0 0.0016 3.4E-08 68.3 23.9 74 334-416 213-288 (293)
53 TIGR00241 CoA_E_activ CoA-subs 98.0 0.00013 2.7E-09 76.2 14.9 169 193-412 73-247 (248)
54 TIGR02261 benz_CoA_red_D benzo 97.8 0.0033 7.3E-08 65.0 21.4 45 370-414 214-262 (262)
55 TIGR03286 methan_mark_15 putat 97.7 0.0028 6.1E-08 69.1 20.2 45 370-415 358-402 (404)
56 KOG0676 Actin and related prot 97.7 0.00035 7.6E-09 75.5 13.1 210 143-392 82-315 (372)
57 PF08841 DDR: Diol dehydratase 97.7 0.00042 9.2E-09 70.3 12.3 190 185-414 106-329 (332)
58 COG1924 Activator of 2-hydroxy 97.6 0.018 3.9E-07 61.5 22.9 72 340-416 318-390 (396)
59 PF06277 EutA: Ethanolamine ut 97.6 0.0041 8.9E-08 68.8 18.3 279 25-418 4-295 (473)
60 COG4457 SrfB Uncharacterized p 97.3 0.03 6.6E-07 63.1 20.9 84 330-418 743-848 (1014)
61 KOG0797 Actin-related protein 97.0 0.0065 1.4E-07 66.5 12.1 121 135-278 196-322 (618)
62 TIGR02259 benz_CoA_red_A benzo 96.8 0.036 7.8E-07 60.0 15.0 46 369-414 383-432 (432)
63 PF02782 FGGY_C: FGGY family o 96.4 0.0057 1.2E-07 61.3 6.3 48 367-416 149-196 (198)
64 PRK13317 pantothenate kinase; 96.3 0.092 2E-06 55.5 14.5 49 367-415 222-273 (277)
65 KOG0677 Actin-related protein 96.3 0.11 2.3E-06 52.4 13.8 193 162-391 102-318 (389)
66 PF14574 DUF4445: Domain of un 95.9 0.41 9E-06 53.2 17.6 84 329-413 290-374 (412)
67 PRK15027 xylulokinase; Provisi 95.5 0.034 7.4E-07 64.1 8.2 84 333-421 355-439 (484)
68 PLN02669 xylulokinase 95.4 0.05 1.1E-06 63.6 8.7 77 334-416 416-492 (556)
69 TIGR01315 5C_CHO_kinase FGGY-f 95.1 0.066 1.4E-06 62.6 8.8 86 333-420 409-494 (541)
70 PF01968 Hydantoinase_A: Hydan 94.9 0.089 1.9E-06 56.1 8.4 69 342-413 216-284 (290)
71 KOG2517 Ribulose kinase and re 94.7 0.35 7.5E-06 54.7 12.5 74 344-422 394-467 (516)
72 PF14450 FtsA: Cell division p 94.4 0.17 3.6E-06 46.4 7.9 47 218-275 1-51 (120)
73 TIGR01312 XylB D-xylulose kina 94.4 0.12 2.7E-06 59.5 8.5 53 367-421 390-442 (481)
74 PRK00047 glpK glycerol kinase; 94.4 0.11 2.4E-06 60.1 8.1 53 367-421 403-455 (498)
75 TIGR01311 glycerol_kin glycero 94.2 0.11 2.4E-06 60.1 7.6 81 335-421 369-451 (493)
76 PRK04123 ribulokinase; Provisi 94.1 0.12 2.5E-06 60.7 7.8 51 367-419 438-489 (548)
77 PLN02295 glycerol kinase 94.1 0.19 4.2E-06 58.3 9.5 53 367-421 412-464 (512)
78 PTZ00294 glycerol kinase-like 94.0 0.14 3.1E-06 59.3 8.1 53 367-421 406-458 (504)
79 TIGR01234 L-ribulokinase L-rib 94.0 0.14 3.1E-06 59.8 8.2 82 334-421 405-488 (536)
80 TIGR02628 fuculo_kin_coli L-fu 94.0 0.2 4.4E-06 57.4 9.2 52 367-420 393-444 (465)
81 COG1069 AraB Ribulose kinase [ 93.8 1 2.2E-05 50.7 13.7 82 335-421 399-483 (544)
82 PRK10331 L-fuculokinase; Provi 93.8 0.16 3.4E-06 58.4 7.8 53 367-421 389-441 (470)
83 TIGR02627 rhamnulo_kin rhamnul 93.6 0.18 3.9E-06 57.6 7.8 52 367-421 387-438 (454)
84 KOG2531 Sugar (pentulose and h 93.5 0.24 5.3E-06 54.1 8.0 55 360-416 435-489 (545)
85 PRK10854 exopolyphosphatase; P 93.3 1.2 2.5E-05 51.8 13.8 56 177-234 99-155 (513)
86 TIGR01314 gntK_FGGY gluconate 93.1 0.23 4.9E-06 57.7 7.7 82 335-421 371-453 (505)
87 PRK10640 rhaB rhamnulokinase; 93.1 0.4 8.7E-06 55.0 9.6 52 367-421 375-426 (471)
88 KOG0681 Actin-related protein 92.5 2.2 4.7E-05 47.9 13.5 122 139-279 94-216 (645)
89 PRK10939 autoinducer-2 (AI-2) 92.4 0.3 6.6E-06 56.8 7.6 52 367-420 409-460 (520)
90 COG4819 EutA Ethanolamine util 92.3 0.71 1.5E-05 48.4 8.9 71 163-234 89-163 (473)
91 TIGR00555 panK_eukar pantothen 92.2 2 4.3E-05 45.3 12.5 47 366-412 229-278 (279)
92 COG1070 XylB Sugar (pentulose 91.1 0.93 2E-05 52.5 9.5 80 334-418 370-450 (502)
93 PRK09557 fructokinase; Reviewe 91.0 25 0.00053 37.6 20.1 44 187-233 96-139 (301)
94 PTZ00107 hexokinase; Provision 90.7 10 0.00022 43.1 17.0 81 336-418 370-461 (464)
95 PRK09698 D-allose kinase; Prov 89.8 31 0.00067 36.9 21.0 43 187-233 104-146 (302)
96 KOG0680 Actin-related protein 88.8 6.4 0.00014 41.5 12.2 99 162-277 94-198 (400)
97 PF02541 Ppx-GppA: Ppx/GppA ph 87.2 2.6 5.7E-05 44.8 8.9 53 180-234 77-130 (285)
98 PF07318 DUF1464: Protein of u 86.5 16 0.00034 39.5 13.9 71 345-420 242-319 (343)
99 PF01869 BcrAD_BadFG: BadF/Bad 86.0 2.7 5.9E-05 44.3 8.2 70 342-414 198-271 (271)
100 TIGR00744 ROK_glcA_fam ROK fam 85.2 58 0.0013 35.0 21.4 94 137-233 32-140 (318)
101 smart00842 FtsA Cell division 84.6 4.3 9.3E-05 40.2 8.4 39 134-173 41-79 (187)
102 PRK14878 UGMP family protein; 84.4 66 0.0014 34.9 18.3 25 367-391 241-265 (323)
103 COG0248 GppA Exopolyphosphatas 84.2 4.4 9.5E-05 46.4 9.1 57 176-234 90-147 (492)
104 PRK11031 guanosine pentaphosph 84.0 1.8 4E-05 49.9 6.1 57 176-234 93-150 (496)
105 COG1548 Predicted transcriptio 83.4 11 0.00023 38.6 10.3 71 146-233 76-147 (330)
106 PLN02666 5-oxoprolinase 82.9 16 0.00035 46.8 14.1 78 333-413 453-531 (1275)
107 KOG0681 Actin-related protein 82.9 1.8 3.8E-05 48.6 5.0 67 350-416 539-614 (645)
108 PF03702 UPF0075: Uncharacteri 81.8 4.9 0.00011 44.2 8.0 70 342-416 262-337 (364)
109 TIGR03706 exo_poly_only exopol 81.0 17 0.00037 39.0 11.8 55 177-234 87-143 (300)
110 KOG1385 Nucleoside phosphatase 79.2 6 0.00013 43.3 7.4 161 25-233 68-230 (453)
111 COG5026 Hexokinase [Carbohydra 78.5 6.5 0.00014 43.3 7.4 20 24-43 75-94 (466)
112 COG0554 GlpK Glycerol kinase [ 77.1 13 0.00029 41.6 9.4 84 334-422 371-455 (499)
113 PF08735 DUF1786: Putative pyr 77.0 19 0.00041 37.2 9.9 72 158-233 111-184 (254)
114 PLN02362 hexokinase 76.9 7.6 0.00016 44.6 7.8 54 173-231 204-259 (509)
115 PRK14101 bifunctional glucokin 75.8 53 0.0011 39.4 15.1 20 22-41 16-35 (638)
116 PLN02405 hexokinase 75.6 7.4 0.00016 44.6 7.3 56 173-233 204-261 (497)
117 COG2377 Predicted molecular ch 74.8 54 0.0012 35.7 13.0 54 364-417 287-344 (371)
118 COG0145 HyuA N-methylhydantoin 74.5 4.4 9.5E-05 48.2 5.3 41 192-234 256-296 (674)
119 TIGR03281 methan_mark_12 putat 72.6 15 0.00033 38.8 8.0 51 368-421 263-316 (326)
120 PF03652 UPF0081: Uncharacteri 72.5 5.7 0.00012 37.1 4.6 18 24-41 1-18 (135)
121 cd06007 R3H_DEXH_helicase R3H 72.0 11 0.00023 29.7 5.2 36 154-191 9-44 (59)
122 PF02543 CmcH_NodU: Carbamoylt 70.6 13 0.00027 41.1 7.5 82 333-419 132-216 (360)
123 PLN02914 hexokinase 70.5 13 0.00027 42.6 7.6 59 172-235 203-263 (490)
124 PRK00976 hypothetical protein; 70.4 19 0.00042 38.7 8.5 51 367-420 263-315 (326)
125 KOG1369 Hexokinase [Carbohydra 69.7 11 0.00024 42.6 6.7 65 167-236 184-251 (474)
126 PRK09604 UGMP family protein; 68.8 1.8E+02 0.0039 31.7 21.2 59 350-413 242-305 (332)
127 cd02640 R3H_NRF R3H domain of 67.6 16 0.00035 28.8 5.4 41 150-191 5-45 (60)
128 TIGR00329 gcp_kae1 metallohydr 67.4 1.8E+02 0.0039 31.2 15.4 51 336-391 231-282 (305)
129 PRK09585 anmK anhydro-N-acetyl 67.1 27 0.00059 38.4 9.0 63 350-416 272-338 (365)
130 COG0533 QRI7 Metal-dependent p 65.7 89 0.0019 33.8 12.2 53 335-392 230-286 (342)
131 smart00732 YqgFc Likely ribonu 64.2 5.8 0.00013 34.4 2.7 17 25-41 2-18 (99)
132 TIGR03722 arch_KAE1 universal 63.7 2.2E+02 0.0048 30.8 17.6 43 367-409 242-289 (322)
133 KOG2708 Predicted metalloprote 63.5 99 0.0021 31.3 11.1 75 333-413 224-301 (336)
134 TIGR03723 bact_gcp putative gl 63.0 2.2E+02 0.0048 30.6 20.1 57 349-411 246-308 (314)
135 PRK00109 Holliday junction res 62.8 14 0.00031 34.5 5.2 19 23-41 3-21 (138)
136 PRK03011 butyrate kinase; Prov 61.3 16 0.00035 40.2 6.0 47 367-413 295-344 (358)
137 PF07765 KIP1: KIP1-like prote 60.1 39 0.00085 27.7 6.4 56 716-776 13-73 (74)
138 PF00370 FGGY_N: FGGY family o 60.0 9.6 0.00021 39.4 3.9 17 26-42 2-18 (245)
139 PLN02596 hexokinase-like 59.5 19 0.00041 41.2 6.3 59 173-236 204-264 (490)
140 TIGR00143 hypF [NiFe] hydrogen 56.8 19 0.00041 43.5 6.0 49 367-415 658-711 (711)
141 cd02641 R3H_Smubp-2_like R3H d 56.4 31 0.00067 27.2 5.2 41 150-191 5-45 (60)
142 COG1940 NagC Transcriptional r 56.4 1.7E+02 0.0038 31.2 13.1 38 187-226 106-143 (314)
143 KOG2707 Predicted metalloprote 56.4 3E+02 0.0064 30.0 21.2 232 140-393 80-331 (405)
144 PTZ00340 O-sialoglycoprotein e 54.5 3.3E+02 0.0071 29.9 19.0 42 346-392 247-288 (345)
145 PF01150 GDA1_CD39: GDA1/CD39 53.6 25 0.00055 39.8 6.2 41 192-233 130-181 (434)
146 COG4012 Uncharacterized protei 51.8 80 0.0017 32.6 8.5 92 168-280 186-277 (342)
147 PRK05082 N-acetylmannosamine k 51.4 2E+02 0.0044 30.3 12.5 49 367-415 233-287 (291)
148 COG4575 ElaB Uncharacterized c 50.3 1.5E+02 0.0033 26.1 8.8 74 702-782 11-84 (104)
149 TIGR03123 one_C_unchar_1 proba 49.8 10 0.00022 40.8 2.1 53 334-394 245-301 (318)
150 PLN02920 pantothenate kinase 1 49.8 72 0.0016 35.3 8.5 50 366-415 296-351 (398)
151 KOG4603 TBP-1 interacting prot 49.0 54 0.0012 31.3 6.3 65 728-792 88-158 (201)
152 PRK12704 phosphodiesterase; Pr 48.4 2.3E+02 0.0051 32.9 12.9 64 729-792 96-159 (520)
153 KOG0678 Actin-related protein 48.3 2.8E+02 0.006 29.9 11.9 97 163-276 108-207 (415)
154 PF03962 Mnd1: Mnd1 family; I 47.5 1.2E+02 0.0026 30.0 9.1 25 755-779 133-157 (188)
155 PRK00106 hypothetical protein; 47.2 1.8E+02 0.0039 33.8 11.6 76 712-792 99-174 (535)
156 COG0816 Predicted endonuclease 47.0 16 0.00035 34.2 2.7 18 24-41 2-19 (141)
157 PRK10939 autoinducer-2 (AI-2) 46.8 15 0.00032 42.8 3.0 19 24-42 3-21 (520)
158 COG1070 XylB Sugar (pentulose 46.2 16 0.00034 42.4 3.1 20 23-42 3-22 (502)
159 cd00529 RuvC_resolvase Hollida 45.8 1.4E+02 0.003 28.5 9.0 64 347-412 80-148 (154)
160 PTZ00294 glycerol kinase-like 45.5 21 0.00045 41.4 3.9 18 25-42 3-20 (504)
161 PRK10331 L-fuculokinase; Provi 45.0 16 0.00035 41.9 2.9 18 25-42 3-20 (470)
162 cd02646 R3H_G-patch R3H domain 44.6 49 0.0011 25.8 4.7 41 148-191 3-43 (58)
163 COG5026 Hexokinase [Carbohydra 43.4 51 0.0011 36.6 6.1 24 213-236 72-95 (466)
164 PRK15027 xylulokinase; Provisi 43.1 19 0.00041 41.5 3.1 17 26-42 2-18 (484)
165 cd00529 RuvC_resolvase Hollida 43.0 27 0.00058 33.4 3.6 16 26-41 2-17 (154)
166 TIGR02628 fuculo_kin_coli L-fu 42.3 21 0.00045 40.9 3.3 18 25-42 2-19 (465)
167 cd02639 R3H_RRM R3H domain of 41.3 51 0.0011 26.0 4.2 31 162-192 16-46 (60)
168 PRK13310 N-acetyl-D-glucosamin 40.9 2.8E+02 0.0062 29.4 11.6 45 186-233 95-139 (303)
169 PF14450 FtsA: Cell division p 40.8 26 0.00057 31.8 3.0 59 142-204 48-119 (120)
170 TIGR03319 YmdA_YtgF conserved 40.8 3.7E+02 0.0081 31.2 13.0 63 730-792 91-153 (514)
171 PF07106 TBPIP: Tat binding pr 40.7 74 0.0016 30.8 6.4 66 728-793 81-152 (169)
172 PRK09605 bifunctional UGMP fam 39.7 6.7E+02 0.014 29.2 23.2 65 349-418 232-301 (535)
173 TIGR00241 CoA_E_activ CoA-subs 39.1 22 0.00047 37.0 2.5 16 26-41 2-17 (248)
174 KOG2196 Nuclear porin [Nuclear 39.1 2.9E+02 0.0062 28.3 10.0 42 698-744 210-251 (254)
175 PLN02377 3-ketoacyl-CoA syntha 39.0 90 0.0019 36.0 7.6 56 339-394 165-221 (502)
176 PF00349 Hexokinase_1: Hexokin 38.0 46 0.001 33.5 4.6 25 213-237 60-84 (206)
177 TIGR01314 gntK_FGGY gluconate 37.8 26 0.00057 40.6 3.2 17 26-42 2-18 (505)
178 TIGR01311 glycerol_kin glycero 37.7 31 0.00066 39.9 3.7 17 25-41 2-18 (493)
179 COG4296 Uncharacterized protei 37.7 35 0.00077 31.1 3.2 22 715-736 91-112 (156)
180 PRK00047 glpK glycerol kinase; 37.6 30 0.00065 40.1 3.6 18 25-42 6-23 (498)
181 COG2441 Predicted butyrate kin 37.6 1.2E+02 0.0027 31.6 7.4 55 366-420 272-336 (374)
182 TIGR01234 L-ribulokinase L-rib 37.1 25 0.00054 41.1 2.9 17 25-41 2-18 (536)
183 PRK07058 acetate kinase; Provi 37.1 2.5E+02 0.0054 31.3 10.2 46 343-392 298-344 (396)
184 PLN02295 glycerol kinase 36.7 28 0.00061 40.4 3.2 17 26-42 2-18 (512)
185 PF02801 Ketoacyl-synt_C: Beta 36.2 43 0.00093 30.3 3.7 47 348-394 25-73 (119)
186 TIGR01315 5C_CHO_kinase FGGY-f 35.8 26 0.00055 41.1 2.7 17 26-42 2-18 (541)
187 PRK02224 chromosome segregatio 35.5 2.4E+02 0.0051 35.3 11.3 46 646-691 145-190 (880)
188 PRK05082 N-acetylmannosamine k 34.9 1.3E+02 0.0028 31.9 7.8 37 187-226 96-132 (291)
189 PRK00039 ruvC Holliday junctio 34.9 46 0.001 32.2 3.8 19 23-41 1-19 (164)
190 KOG0103 Molecular chaperones H 34.7 72 0.0016 37.5 5.8 65 673-748 651-725 (727)
191 PF00349 Hexokinase_1: Hexokin 34.7 50 0.0011 33.3 4.2 39 169-207 163-204 (206)
192 PF00480 ROK: ROK family; Int 34.3 1.4E+02 0.003 28.8 7.3 44 187-233 91-134 (179)
193 PF14574 DUF4445: Domain of un 34.3 1.3E+02 0.0028 33.8 7.7 54 339-392 55-108 (412)
194 PRK13317 pantothenate kinase; 34.1 35 0.00077 36.1 3.2 18 24-41 2-19 (277)
195 TIGR00250 RNAse_H_YqgF RNAse H 33.0 40 0.00087 31.2 3.0 15 27-41 1-15 (130)
196 PLN02939 transferase, transfer 32.6 4E+02 0.0087 33.3 11.9 122 647-773 237-367 (977)
197 PRK04123 ribulokinase; Provisi 32.5 33 0.00071 40.2 2.9 17 25-41 4-20 (548)
198 PF08194 DIM: DIM protein; In 32.5 61 0.0013 22.7 2.9 14 1-14 1-14 (36)
199 PRK10869 recombination and rep 32.1 7.1E+02 0.015 29.3 13.7 62 650-716 244-309 (553)
200 PF02075 RuvC: Crossover junct 31.6 1.5E+02 0.0032 28.1 6.7 18 218-235 1-18 (149)
201 PLN02854 3-ketoacyl-CoA syntha 30.9 1.1E+02 0.0024 35.4 6.6 46 349-394 191-237 (521)
202 PRK13310 N-acetyl-D-glucosamin 30.6 1.5E+02 0.0033 31.6 7.4 49 367-415 245-301 (303)
203 PLN03170 chalcone synthase; Pr 30.2 2.5E+02 0.0053 31.5 9.2 51 344-394 104-155 (401)
204 PLN03172 chalcone synthase fam 30.2 1.5E+02 0.0032 33.2 7.4 51 344-394 100-151 (393)
205 PLN02669 xylulokinase 29.2 43 0.00093 39.3 3.1 21 22-42 6-26 (556)
206 PRK00039 ruvC Holliday junctio 28.9 5.2E+02 0.011 24.9 10.0 69 348-418 83-156 (164)
207 TIGR00634 recN DNA repair prot 28.7 9.9E+02 0.022 28.0 14.4 65 650-719 251-317 (563)
208 PRK00877 hisD bifunctional his 28.2 59 0.0013 36.4 3.7 48 161-209 151-199 (425)
209 PF11466 Doppel: Prion-like pr 27.9 44 0.00096 22.0 1.6 18 1-18 1-19 (30)
210 PF00815 Histidinol_dh: Histid 27.9 91 0.002 34.8 5.1 75 126-209 110-186 (412)
211 PRK07515 3-oxoacyl-(acyl carri 27.7 94 0.002 34.3 5.4 48 343-392 266-313 (372)
212 PF02075 RuvC: Crossover junct 27.7 61 0.0013 30.7 3.3 18 26-43 1-18 (149)
213 TIGR02259 benz_CoA_red_A benzo 27.6 51 0.0011 36.4 3.0 17 25-41 3-19 (432)
214 KOG0797 Actin-related protein 27.5 25 0.00054 39.6 0.7 53 366-418 525-591 (618)
215 PLN03173 chalcone synthase; Pr 27.4 1.8E+02 0.0038 32.5 7.4 50 345-394 101-151 (391)
216 PF13941 MutL: MutL protein 27.2 29 0.00063 39.3 1.2 33 198-230 230-262 (457)
217 COG4012 Uncharacterized protei 26.5 1.2E+02 0.0026 31.4 5.1 82 217-310 2-97 (342)
218 PF08006 DUF1700: Protein of u 26.4 1.4E+02 0.003 29.3 5.7 58 681-748 5-63 (181)
219 KOG2517 Ribulose kinase and re 26.0 56 0.0012 37.5 3.1 24 23-46 5-28 (516)
220 cd00327 cond_enzymes Condensin 26.0 2.9E+02 0.0064 28.1 8.5 45 349-393 10-56 (254)
221 KOG1760 Molecular chaperone Pr 26.0 5.1E+02 0.011 23.6 10.8 96 646-753 13-115 (131)
222 PF04614 Pex19: Pex19 protein 25.1 3.3E+02 0.0072 28.2 8.4 68 675-751 120-187 (248)
223 TIGR03185 DNA_S_dndD DNA sulfu 24.6 4.4E+02 0.0095 31.7 10.6 68 647-720 370-438 (650)
224 PF04848 Pox_A22: Poxvirus A22 24.5 1E+02 0.0022 29.0 4.1 19 24-42 1-19 (143)
225 COG0141 HisD Histidinol dehydr 24.5 59 0.0013 36.1 2.8 48 161-209 147-195 (425)
226 KOG0994 Extracellular matrix g 24.4 2.9E+02 0.0063 34.7 8.5 40 664-708 1458-1497(1758)
227 PF07172 GRP: Glycine rich pro 24.2 57 0.0012 28.4 2.2 17 2-18 4-20 (95)
228 COG3426 Butyrate kinase [Energ 24.0 1.1E+02 0.0024 32.1 4.4 49 364-412 293-344 (358)
229 PF11593 Med3: Mediator comple 23.4 1.2E+02 0.0025 33.0 4.7 43 711-755 9-51 (379)
230 PRK03918 chromosome segregatio 23.2 7.6E+02 0.017 30.7 12.8 22 700-721 656-677 (880)
231 PRK10081 entericidin B membran 22.9 76 0.0016 23.7 2.2 16 1-16 2-17 (48)
232 KOG3133 40 kDa farnesylated pr 22.9 3.2E+02 0.0069 28.4 7.4 64 676-748 141-204 (267)
233 PRK00409 recombination and DNA 22.7 6E+02 0.013 31.3 11.2 115 646-772 498-622 (782)
234 COG4020 Uncharacterized protei 22.4 2.6E+02 0.0056 28.9 6.6 83 333-420 228-321 (332)
235 PF08392 FAE1_CUT1_RppA: FAE1/ 22.3 3.5E+02 0.0076 28.8 7.9 46 349-394 86-132 (290)
236 PLN02192 3-ketoacyl-CoA syntha 22.2 2.2E+02 0.0047 33.0 6.9 56 339-394 169-225 (511)
237 PF08139 LPAM_1: Prokaryotic m 22.1 58 0.0013 20.8 1.3 14 1-14 7-20 (25)
238 PRK13321 pantothenate kinase; 21.7 78 0.0017 33.0 3.1 16 26-41 2-17 (256)
239 COG5185 HEC1 Protein involved 21.1 1.2E+03 0.027 26.3 12.9 84 650-735 281-374 (622)
240 PF09286 Pro-kuma_activ: Pro-k 21.0 1.8E+02 0.0039 27.1 5.1 46 676-723 26-75 (143)
241 COG1069 AraB Ribulose kinase [ 21.0 83 0.0018 36.1 3.2 24 23-46 2-25 (544)
242 PRK12879 3-oxoacyl-(acyl carri 20.5 2E+02 0.0043 30.9 6.0 47 344-393 221-267 (325)
243 PRK13318 pantothenate kinase; 20.1 88 0.0019 32.6 3.1 16 26-41 2-17 (258)
244 PLN03168 chalcone synthase; Pr 20.1 5.2E+02 0.011 28.8 9.3 51 344-394 99-150 (389)
No 1
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-122 Score=935.21 Aligned_cols=625 Identities=29% Similarity=0.522 Sum_probs=571.4
Q ss_pred CchhhHHHHHHHHHHHhh--hcC----------CCCcEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceeEEEE
Q 003784 1 MKRMLLKLLTFLSVASLL--VSH----------SQSAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAF 68 (795)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~--~~~----------~~~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~v~~ 68 (795)
||+.+++.+.+++.++++ ... ...+|||||||||||||+++ ++| .++|+.|++|+|.+||+|+|
T Consensus 1 mk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gtvigIdLGTTYsCVgV~--kNg--rvEIiANdQGNRItPSyVaF 76 (663)
T KOG0100|consen 1 MKLSFLLAMLLFLAVLFFGCSEAASTEKEDEAEKLGTVIGIDLGTTYSCVGVY--KNG--RVEIIANDQGNRITPSYVAF 76 (663)
T ss_pred CchHHHHHHHHHHHHHHhhhhhhhhhccccchhccceEEEEecCCceeeEEEE--eCC--eEEEEecCCCCccccceeee
Confidence 887776665555554333 211 24579999999999999999 777 68999999999999999999
Q ss_pred eCCcEEEcHhHHHHHhhCcchhhhhhhhhcCCCChhhHhhHhhcCCCceEEECC-CCcEEEEeCCC--ccccHHHHHHHH
Q 003784 69 HESTRLLGEEASGIIARYPHRVYSQLRDMIGKPFKQVKHLIDSLYLPFNVVEDS-RGAVSFKIDEN--NNFSVEELLAMV 145 (795)
Q Consensus 69 ~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~eel~a~~ 145 (795)
++.+|++|+.|.+++..||++++++.|||||+.+.+.....+.++|||+++... +..+.+.+.+| +.|+||++++|+
T Consensus 77 t~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~vq~Dik~~Pfkvv~k~~kp~i~v~v~~g~~K~FtPeEiSaMi 156 (663)
T KOG0100|consen 77 TDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDKSVQKDIKFLPFKVVNKDGKPYIQVKVGGGETKVFTPEEISAMI 156 (663)
T ss_pred ccchhhhhhHhhcccccCcccceechHHHhCcccCChhhhhhhhcCceEEEcCCCCccEEEEccCCcccccCHHHHHHHH
Confidence 999999999999999999999999999999997766555667889999999775 55666777655 789999999999
Q ss_pred HHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecC
Q 003784 146 LSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGA 225 (795)
Q Consensus 146 L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~Gg 225 (795)
|.++++.|+.++|.++.++|+||||||++.||+++++|..+|||+++++||||+|||++|++++ ..+..++||||+||
T Consensus 157 L~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKDAGtIAgLnV~RIiNePTaAAIAYGLDK--k~gEknilVfDLGG 234 (663)
T KOG0100|consen 157 LTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYGLDK--KDGEKNILVFDLGG 234 (663)
T ss_pred HHHHHHHHHHHhCCcccceEEecchhcchHHHhhhcccceeccceEEEeecCccHHHHHhcccc--cCCcceEEEEEcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999987 45568999999999
Q ss_pred ccceeeEEEEeeccccccCeeeecCeEEEEEeccCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHH
Q 003784 226 TTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVK 305 (795)
Q Consensus 226 gT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e 305 (795)
||||+|++ .+.+|.|+|+++.||.+|||.+||+++++|+.+.++++ ++.|++.+.+++.+|+++||
T Consensus 235 GTFDVSlL------------tIdnGVFeVlaTnGDThLGGEDFD~rvm~~fiklykkK--~gkDv~kdnkA~~KLrRe~E 300 (663)
T KOG0100|consen 235 GTFDVSLL------------TIDNGVFEVLATNGDTHLGGEDFDQRVMEYFIKLYKKK--HGKDVRKDNKAVQKLRREVE 300 (663)
T ss_pred ceEEEEEE------------EEcCceEEEEecCCCcccCccchHHHHHHHHHHHHhhh--cCCccchhhHHHHHHHHHHH
Confidence 99999999 55699999999999999999999999999999999999 99999999999999999999
Q ss_pred HHhhhccCCCceeEEEeecccCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHH
Q 003784 306 RTKEILSANTMAPISVESLYVDIDFRSSITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQA 385 (795)
Q Consensus 306 ~~K~~LS~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~ 385 (795)
+||+.||+..++.+.|++|++|.||+-++||..||++.-++|.....+++++|+.+++...+|+.|+|||||+|||.||+
T Consensus 301 kAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQq 380 (663)
T KOG0100|consen 301 KAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQ 380 (663)
T ss_pred HHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHHHHHhhcCcccccCceEEEecCcccChhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccCCCCCcchhhHhhHHHHHHHhcCCccccCcceeEecceeeeEeeecCCccccCCCcceeeeeCCCCCCc
Q 003784 386 KLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPS 465 (795)
Q Consensus 386 ~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~ls~~~~~~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~ 465 (795)
+|+++|++++.++.+|||||||+|||.+|..+|+.... .++.+.|++|..+||++.|+-|. .||||++.+|+
T Consensus 381 llk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~t-~divLLDv~pLtlGIETvGGVMT-------klI~RNTviPT 452 (663)
T KOG0100|consen 381 LLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEEDT-GDIVLLDVNPLTLGIETVGGVMT-------KLIPRNTVIPT 452 (663)
T ss_pred HHHHHhCCCCccCCCChHHHHHhhhhhhhcccccccCc-CcEEEEeeccccceeeeecceee-------ccccCCcccCc
Confidence 99999988899999999999999999999999998888 89999999999999999999875 89999999999
Q ss_pred ceEEeeeecc----cEEEEEEeecCCCCCCCCCCCceeEEEEcCCccchhhhccCCCCCCceEEEEEEEecCCceEEeee
Q 003784 466 KMFRSIIHAK----DFEVSLAYESEDLLPPGATSPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRA 541 (795)
Q Consensus 466 ~~~~~f~~~~----~~~i~i~y~~~~~~~~~~~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~ 541 (795)
+++..|++.. .++|.+ |+|++++.. +|+.+|.|.++|||++| +| .| .|.|+|++|.||+|.|++.
T Consensus 453 kKSQvFsTa~DnQ~tV~I~v-yEGER~mtk--dn~lLGkFdltGipPAP-----RG--vp-qIEVtFevDangiL~VsAe 521 (663)
T KOG0100|consen 453 KKSQVFSTAQDNQPTVTIQV-YEGERPMTK--DNHLLGKFDLTGIPPAP-----RG--VP-QIEVTFEVDANGILQVSAE 521 (663)
T ss_pred cccceeeecccCCceEEEEE-eeccccccc--cccccccccccCCCCCC-----CC--Cc-cEEEEEEEccCceEEEEee
Confidence 9999998853 478888 999999988 69999999999999998 55 78 9999999999999987532
Q ss_pred eeEEEEEEEeeccccccccccccCCCCCCchhhhhhccccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCccchhh
Q 003784 542 DAVIEITEWVEVPKKNLIVENVASSSPNISAETAAQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLT 621 (795)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (795)
+- . +++
T Consensus 522 DK--------------------------------g--------------tg~---------------------------- 527 (663)
T KOG0100|consen 522 DK--------------------------------G--------------TGK---------------------------- 527 (663)
T ss_pred cc--------------------------------C--------------CCC----------------------------
Confidence 20 0 000
Q ss_pred hcccccceeeeeeEEEeeccCCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCC
Q 003784 622 EKRLKKRTFRVPLKIVEKTVGPGASLSKEALVDAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVST 701 (795)
Q Consensus 622 ~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~ 701 (795)
+-.|+|++. ...||+++|++|++..++++.+|+...++.++||.||+|.|+|++.+.+.+.+...++
T Consensus 528 ---------~~kitItNd----~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekLg~Kl~ 594 (663)
T KOG0100|consen 528 ---------KEKITITND----KGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKLGGKLS 594 (663)
T ss_pred ---------cceEEEecC----CCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhHhcccCC
Confidence 004677643 4579999999999999999999999999999999999999999999998777999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhHHHHHHHhh
Q 003784 702 SEERQSFVEKLDEAQEWLYTDGEDATAKEFQERLDVLKAIGDPVFFRFKEL 752 (795)
Q Consensus 702 ~~e~~~i~~~l~e~~~Wl~~~g~~a~~~~~~~k~~~L~~~~~~i~~r~~e~ 752 (795)
+++++.+...++++.+||+++ ++|++++|.+|+++|+.+++||+.+++..
T Consensus 595 ~edKe~~e~av~e~~eWL~~n-~~a~~Ee~~ek~kele~vv~PiisklY~~ 644 (663)
T KOG0100|consen 595 DEDKETIEDAVEEALEWLESN-QDASKEEFKEKKKELEAVVQPIISKLYGG 644 (663)
T ss_pred hhHHHHHHHHHHHHHHHHhhc-ccccHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999 79999999999999999999999998774
No 2
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-105 Score=871.48 Aligned_cols=751 Identities=36% Similarity=0.562 Sum_probs=614.7
Q ss_pred CchhhHHHHHHHHHHHhhhcCCCCcEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceeEEEEeCCcEEEcHhHH
Q 003784 1 MKRMLLKLLTFLSVASLLVSHSQSAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHESTRLLGEEAS 80 (795)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~v~~~~~~~~~G~~A~ 80 (795)
|++.+++.+. ++.+++...+..+|++|||||.+++||++ +|| .|++|++|..++|++|++|+|.+++|+||.+|.
T Consensus 1 ~~~~~llv~l--~~~~~~~~~~~~AvmsVDlGse~~Kv~vV--kPG-vPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~ 75 (902)
T KOG0104|consen 1 MKGRVLLVIL--LLCLFVALSSALAVMSVDLGSEWIKVAVV--KPG-VPMEIVLNKESRRKTPSIVAFKGGERIFGEAAA 75 (902)
T ss_pred CcchhHHHHH--HHHHHhcccchhhheeeecccceeEEEEe--cCC-CCeEEeechhhcccCcceEEecCCceehhhhhh
Confidence 4544443333 33334445667899999999999999999 898 899999999999999999999999999999999
Q ss_pred HHHhhCcchhhhhhhhhcCCCChh-hHhhHhhcCCCceEEECC-CCcEEEEeCCCccccHHHHHHHHHHHHHHHHHhhcC
Q 003784 81 GIIARYPHRVYSQLRDMIGKPFKQ-VKHLIDSLYLPFNVVEDS-RGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAK 158 (795)
Q Consensus 81 ~~~~~~p~~~~~~~K~llG~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~ 158 (795)
+++.++|++++.+++.|||++..+ .-....+.+++|.++.++ ++++.|.+.+...|++|+++||+|.+.+..|+.+..
T Consensus 76 ~ma~r~P~~~~~~l~~llgk~~~~~~v~ly~~~~p~~e~v~d~~rstV~F~i~d~~~ysvEellAMil~~a~~~ae~~a~ 155 (902)
T KOG0104|consen 76 SMATRFPQSTYRQLKDLLGKSLDDPTVDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELLAMILQYAKSLAEEYAK 155 (902)
T ss_pred hhhhcCcHHHHHHHHHHhCcccCCcHHHHHHhcCCceeecccCccceEEEEeCCccccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999994322 333445668999999996 999999998877899999999999999999999999
Q ss_pred CCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceeeecchhHHHHHHhhhcC--CCCCCCcEEEEEEecCccceeeEEEEe
Q 003784 159 LAVKDFVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSGAALQYGIDK--DFSNESRHVVFYDMGATTTYAALVYFS 236 (795)
Q Consensus 159 ~~~~~~VItVPa~f~~~qR~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~--~~~~~~~~vlV~D~GggT~dvsvv~~~ 236 (795)
.+|+++|||||.||++.||+++.+||++||++++.||||.+||||.|+..+ .++..+++++|||||+|+|.++++.|.
T Consensus 156 ~~Ikd~ViTVP~~F~qaeR~all~Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~ 235 (902)
T KOG0104|consen 156 QPIKDMVITVPPFFNQAERRALLQAAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQ 235 (902)
T ss_pred cchhheEEeCCcccCHHHHHHHHHHHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEE
Confidence 999999999999999999999999999999999999999999999999975 677889999999999999999999999
Q ss_pred eccccccCeeeecCeEEEEEeccCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCc
Q 003784 237 AYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTM 316 (795)
Q Consensus 237 ~~~~~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~ 316 (795)
....+..| ....+++++++++|..|||..|.++|.+|+.+.|.++++.+.++..+||+|++|.++|+++|..||+|.+
T Consensus 236 ~v~~k~~g--~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANse 313 (902)
T KOG0104|consen 236 LVKTKEQG--GKQPQIQVLGVGFDRTLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSE 313 (902)
T ss_pred eecccccc--CccceEEEEeeccCCccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchh
Confidence 88877765 3467899999999999999999999999999999999766778999999999999999999999999999
Q ss_pred eeEEEeecccCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCcc
Q 003784 317 APISVESLYVDIDFRSSITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTEL 396 (795)
Q Consensus 317 ~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i 396 (795)
+.++|++|++|+||+.+|||++||++|.++..++..||.++|..++++.++|+.|+|+||++|+|.||+.|.++.|..++
T Consensus 314 a~aqIEsL~ddiDFr~kvTRe~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei 393 (902)
T KOG0104|consen 314 AFAQIESLIDDIDFRLKVTREEFEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEEL 393 (902)
T ss_pred hHHHHHHHhhccccccceeHHHHHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhhHhhHHHHHHHhcCCccccCcceeEecceeeeEeeecCCcc-ccCCCcceeeeeCCCCCCcceEEeeeec-
Q 003784 397 DRHLDADEAIVLGASLLAANLSDGIKLNRKLGMVDGSSYGFVVELDGPEL-QKDESTRQLLAPRMKKLPSKMFRSIIHA- 474 (795)
Q Consensus 397 ~~~~n~deaVa~GAa~~aa~ls~~~~~~~~~~i~d~~~~~igi~~~~~~~-~~~~~~~~~l~~~~~~~P~~~~~~f~~~- 474 (795)
.+++|+|||+++||+++||.||.+|++ +++.+.|.+.|+|.+++.+... ...++....+|+++.++|.++.++|+..
T Consensus 394 ~knlNaDEA~vmGav~~aA~LSksFKv-Kpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ys 472 (902)
T KOG0104|consen 394 GKNLNADEAAVMGAVYQAAHLSKSFKV-KPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYS 472 (902)
T ss_pred hcccChhHHHHHHHHHHHHhhcccccc-cceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccC
Confidence 999999999999999999999999999 9999999999999999887522 2244556689999999999999999876
Q ss_pred ccEEEEEEeecCCCCCCCCCCCceeEEEEcCCccchhhhccCCCCCCceEEEEEEEecCCceEEeeeeeEEEEEEEeecc
Q 003784 475 KDFEVSLAYESEDLLPPGATSPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVP 554 (795)
Q Consensus 475 ~~~~i~i~y~~~~~~~~~~~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~ 554 (795)
.+|.+.++|..- ..++.+|.++|+.++.+++.....+. ..|+++|.+|.+|++.|+.++++++.....+..
T Consensus 473 ddf~~~~n~~~~--------~~nl~~velsgV~d~~kk~~~~~~~~-KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~ 543 (902)
T KOG0104|consen 473 DDFPFNINYGDL--------GQNLTTVELSGVKDALKKNSYSDSES-KGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSG 543 (902)
T ss_pred Cccccccchhhh--------ccCccEEEEecchHHHHhcccchhhc-cCceEEEEEcCcCceEEeeeeEEEeccCCcccc
Confidence 578888866542 24577899999999887765432112 279999999999999999999998764322111
Q ss_pred cccccc--ccccCCCCCCchhhhhhccccccccccccCCCCCCCCCchhhh-hhcCCCCCCCCCccchhhhccccc--ce
Q 003784 555 KKNLIV--ENVASSSPNISAETAAQNMTVEANENLQSESGTSSASNSTAEE-LSASNSSAEEPSKTELLTEKRLKK--RT 629 (795)
Q Consensus 555 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~k~--~~ 629 (795)
.+..+. ...+... ..+..+....++.+.++. +.+..++..+ ..++ .+.+..+..+..+....+.+|..+ -.
T Consensus 544 ~~~st~~K~~~~~e~-e~~~~~~~~~e~ae~k~~--ep~e~se~~e-e~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~ 619 (902)
T KOG0104|consen 544 DKKSTLSKLGSTSEG-EETSDDSVQEEDAEEKGL--EPSERSELEE-EAEEDASQEDKTEKETSEAQKPTEKKETPAPMV 619 (902)
T ss_pred hhhhhhhcccccccc-ccccccccchhhhhhhcc--Cccccccccc-cccccccccccccccchhccCcchhhcccCcce
Confidence 111110 0000000 000000000000000000 0000000000 0000 000000001111111111222222 22
Q ss_pred eeeeeEEEeeccCCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHH
Q 003784 630 FRVPLKIVEKTVGPGASLSKEALVDAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFV 709 (795)
Q Consensus 630 ~~~~i~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~i~ 709 (795)
.+++|..+ ... ...|+...+...+.+++.+.++|+.+.++++|.|.||+|+|++.++|++++ |.+|.+++|++.|.
T Consensus 620 ~~~~i~~~--~~~-~~~l~~~~~~~~~~kl~d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~e-y~e~at~EEk~~L~ 695 (902)
T KOG0104|consen 620 VRLQIQET--YPD-LPVLNENALDAAVAKLEDFVQKEKEKSEREEASNELEAFLFELQDKLDDDE-YAEVATEEEKKILK 695 (902)
T ss_pred eEeeeeee--ccc-ccCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCch-HhhhcCHHHHHHHH
Confidence 33344443 211 224999999999999999999999999999999999999999999999976 99999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHhcc
Q 003784 710 EKLDEAQEWLYTDGEDATAKEFQERLDVLKAIGDPVFFRFKELTARPASVEHAQKYLGQLQQIVNDW 776 (795)
Q Consensus 710 ~~l~e~~~Wl~~~g~~a~~~~~~~k~~~L~~~~~~i~~r~~e~~~rp~a~~~~~~~~~~~~~~~~~~ 776 (795)
+.+..+.+||++++.+.++++|.+|+.+|++++..+.+|..+++++|..++.+...++....++...
T Consensus 696 ~~~~~~~~Wleed~~~~~t~~~~ek~a~L~~l~~~~~~R~ee~kq~pe~l~~l~~~l~~s~~~l~~~ 762 (902)
T KOG0104|consen 696 KKVSLLMDWLEEDGSQTPTEMLTEKLAELKKLETSKNFREEERKQFPEELEALKNLLNRSFSFLKQA 762 (902)
T ss_pred HHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999998887543
No 3
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-103 Score=849.64 Aligned_cols=663 Identities=30% Similarity=0.501 Sum_probs=585.5
Q ss_pred CcEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceeEEEEeCCcEEEcHhHHHHHhhCcchhhhhhhhhcCCCCh
Q 003784 24 SAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHESTRLLGEEASGIIARYPHRVYSQLRDMIGKPFK 103 (795)
Q Consensus 24 ~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~~ 103 (795)
|+|+|||||..||.+|++ +.| ++++|.|+.|+|.||++|+|..+.|++|.+|..+...|+.+++..+||++|+.+.
T Consensus 1 msvvG~D~Gn~nc~iavA--r~~--gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~ 76 (727)
T KOG0103|consen 1 MSVVGFDLGNENCYIAVA--RQG--GIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFS 76 (727)
T ss_pred CCceeeeccccceeeeee--ccC--CceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccC
Confidence 359999999999999999 444 7899999999999999999999999999999999999999999999999999665
Q ss_pred hhHhhHhhcCCCceEEECCCCcEEEEeCC--C-ccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHH
Q 003784 104 QVKHLIDSLYLPFNVVEDSRGAVSFKIDE--N-NNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGL 180 (795)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al 180 (795)
+.........+||.++...+|.+++.+.. . +.+++++++||+|.+++..++..+..++.+|||+||+||++.||+++
T Consensus 77 dP~~q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRrav 156 (727)
T KOG0103|consen 77 DPEVQREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAV 156 (727)
T ss_pred ChHhhhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHH
Confidence 55555566689999999999998888753 2 68999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCceeeecchhHHHHHHhhhcC-CC---CCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEE
Q 003784 181 MQAAELAGMNVLSLVNEHSGAALQYGIDK-DF---SNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKD 256 (795)
Q Consensus 181 ~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~-~~---~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~ 256 (795)
.+||++|||++++||+|.+|+|++||+++ ++ ..++.+|+++|+|.+++.+|++.|. .|.+.+++
T Consensus 157 ldAA~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~------------kG~lkvl~ 224 (727)
T KOG0103|consen 157 LDAARIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFT------------KGKLKVLA 224 (727)
T ss_pred HhHHhhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeec------------cCcceeee
Confidence 99999999999999999999999999987 33 3457899999999999999999886 78999999
Q ss_pred eccCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccCcceEEEeeH
Q 003784 257 VRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSITR 336 (795)
Q Consensus 257 ~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~l~~~~d~~~~itr 336 (795)
+.++.++||++||..|.+|++.+|+.+ |++|+..++++..||+.+||++|+.||+|+..+++|+|++++.|.+..|+|
T Consensus 225 ta~D~~lGgr~fDe~L~~hfa~efk~k--ykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~R 302 (727)
T KOG0103|consen 225 TAFDRKLGGRDFDEALIDHFAKEFKTK--YKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKR 302 (727)
T ss_pred eecccccccchHHHHHHHHHHHHhccc--cccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccH
Confidence 999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHHH
Q 003784 337 QKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAAN 416 (795)
Q Consensus 337 ~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~ 416 (795)
+|||++|.|+++|+..++..+|+.+++..+||+.|++|||+||+|.|++.|.++||. .+++++|.|||||+|||+++|+
T Consensus 303 eEfEel~~plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgk-e~s~TlN~dEavarG~ALqcAI 381 (727)
T KOG0103|consen 303 EEFEELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGK-ELSRTLNQDEAVARGAALQCAI 381 (727)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCC-cccccccHHHHHHHhHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999996 7899999999999999999999
Q ss_pred hcCCccccCcceeEecceeeeEeeecCCccccCCCcceeeeeCCCCCCcceEEeeeecccEEEEEEeecCCCCCCCCCCC
Q 003784 417 LSDGIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHAKDFEVSLAYESEDLLPPGATSP 496 (795)
Q Consensus 417 ls~~~~~~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~~~~~i~i~y~~~~~~~~~~~~~ 496 (795)
+|+.||+ +.+.+.|+.||+|.+.|.+... |......+||+|.++|..+.++|.+.++|++.+.|.+...+|. ...
T Consensus 382 lSP~frV-Ref~v~Di~pysIs~~w~~~~e--d~~~~~evF~~~~~~p~~K~lT~~Rk~~F~lea~yt~~~~lp~--~~~ 456 (727)
T KOG0103|consen 382 LSPTFRV-REFSVEDIVPYSISLRWVKQGE--DGGSVTEVFPKGHPSPSVKLLTFNRKGPFTLEAKYTKVNKLPY--PKP 456 (727)
T ss_pred cCccccc-eecceecccceeEEEEeccccc--cCCCceeeecCCCCCCCceEEEEEecCceEEEEEeccccccCC--CCC
Confidence 9999999 9999999999999999987532 3233458999999999999999999999999999998888883 578
Q ss_pred ceeEEEEcCCccchhhhccCCCCCCceEEEEEEEecCCceEEeeeeeEEEEEEEeeccccccccccccCCCCCCchhhhh
Q 003784 497 VFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAETAA 576 (795)
Q Consensus 497 ~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (795)
.|++|++.++.+.. .| +.. +++|..+++.+|++.|.+|.++.+.... ++|.... +..
T Consensus 457 kI~~~~i~~v~~~~-----~g-e~s-kVKvkvr~n~~Gi~~i~sA~~~e~~~ve-ev~~~~~---------------e~~ 513 (727)
T KOG0103|consen 457 KIEKWTITGVTPSE-----DG-EFS-KVKVKVRLNEHGIDTIESATLIEDIEVE-EVPEEPM---------------EYD 513 (727)
T ss_pred ceeeEEecccccCc-----cc-ccc-ceeEEEEEcCccceeeecceeecccchh-ccccchh---------------hhh
Confidence 99999999987653 22 223 8999999999999999999987432211 1221100 000
Q ss_pred hccccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHHHHHHH
Q 003784 577 QNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALVDAE 656 (795)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~~~~~~ 656 (795)
. .+...+....++.|+++.++.|++.... .+.|+..+++..+
T Consensus 514 -------~----------------------------~~~~~~~~~~~~~k~kvk~~~L~~~~~~---~~~l~~~~l~~~~ 555 (727)
T KOG0103|consen 514 -------D----------------------------AAKMLERIAPAENKKKVKKVDLPIEAYT---KGALITDELELYI 555 (727)
T ss_pred -------c----------------------------chhhhhhhccccccceeeeccccceeee---ccccCHHHHHHHH
Confidence 0 0000000011112333344444444322 3469999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHH
Q 003784 657 AKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQERLD 736 (795)
Q Consensus 657 ~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~g~~a~~~~~~~k~~ 736 (795)
+++.+|..+|+...++.++||.||+|||+||++|.+. |.+|++++++++|...|+++++|||++|++.++..|..|+.
T Consensus 556 e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~~--y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~kl~ 633 (727)
T KOG0103|consen 556 EKENKMILQDKLEKETVDAKNALEEYVYDMRDKLSDK--YEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVAKLE 633 (727)
T ss_pred HHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhhhh--hhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHH
Confidence 9999999999999999999999999999999999975 99999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHhc
Q 003784 737 VLKAIGDPVFFRFKELTARPASVEHAQKYLGQLQQIVND 775 (795)
Q Consensus 737 ~L~~~~~~i~~r~~e~~~rp~a~~~~~~~~~~~~~~~~~ 775 (795)
+|+.+++ ..|+.+++.||++++.+.+.|+..+..+.+
T Consensus 634 elk~~g~--~~r~~e~~~r~k~~d~~~~~i~~~r~~~~~ 670 (727)
T KOG0103|consen 634 ELKKLGD--KKRFDENEERPKAFDELGKKIQEIRKAIES 670 (727)
T ss_pred HHHhhhh--hhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999 899999999999999999999988887544
No 4
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=1.7e-98 Score=878.06 Aligned_cols=603 Identities=28% Similarity=0.513 Sum_probs=535.4
Q ss_pred CCCcEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceeEEEEeCCcEEEcHhHHHHHhhCcchhhhhhhhhcCCC
Q 003784 22 SQSAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHESTRLLGEEASGIIARYPHRVYSQLRDMIGKP 101 (795)
Q Consensus 22 ~~~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~ 101 (795)
..+.+||||||||||+||++ .+| ++++++|..|+|.+||+|+|.++++++|..|..++.++|.++++++||+||+.
T Consensus 2 ~~~~~iGIDlGTt~s~va~~--~~g--~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~ 77 (653)
T PTZ00009 2 TKGPAIGIDLGTTYSCVGVW--KNE--NVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRK 77 (653)
T ss_pred CcccEEEEEeCcccEEEEEE--eCC--ceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCC
Confidence 45679999999999999999 555 68999999999999999999999999999999999999999999999999996
Q ss_pred ChhhHhhHhhcCCCceEEECCCCcEEEEe--CC-CccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHH
Q 003784 102 FKQVKHLIDSLYLPFNVVEDSRGAVSFKI--DE-NNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERK 178 (795)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~ 178 (795)
+.+.........+||.++.+.++...+.+ .+ +..++|+++++++|++|++.++.+++.++.++|||||+||++.||+
T Consensus 78 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~ 157 (653)
T PTZ00009 78 FDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQ 157 (653)
T ss_pred CCchhHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHH
Confidence 64433333445789999887777665554 33 2689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEec
Q 003784 179 GLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVR 258 (795)
Q Consensus 179 al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~ 258 (795)
++++||++|||++++||+||+|||++|+..+.. ..+.++|||||||||||+|++++. .+.++++++.
T Consensus 158 a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~-~~~~~vlv~D~GggT~dvsv~~~~------------~~~~~v~a~~ 224 (653)
T PTZ00009 158 ATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKG-DGEKNVLIFDLGGGTFDVSLLTIE------------DGIFEVKATA 224 (653)
T ss_pred HHHHHHHHcCCceeEEecchHHHHHHHhhhccC-CCCCEEEEEECCCCeEEEEEEEEe------------CCeEEEEEec
Confidence 999999999999999999999999999986532 235789999999999999999774 6789999999
Q ss_pred cCCCCchHHHHHHHHHHHHHHHhhhcCC-CCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccCcceEEEeeHH
Q 003784 259 WDAELGGQNMELRLVEYFADEFNKQVGN-GVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSITRQ 337 (795)
Q Consensus 259 ~~~~lGG~~~D~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~l~~~~d~~~~itr~ 337 (795)
|+..+||++||.+|++|+.++|..+ + +.++..+++++.+|+.+||++|+.||.+.++.+.|++++++.++.++|||+
T Consensus 225 gd~~lGG~d~D~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~ 302 (653)
T PTZ00009 225 GDTHLGGEDFDNRLVEFCVQDFKRK--NRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRA 302 (653)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHh--ccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHH
Confidence 9999999999999999999999887 4 467778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHHHh
Q 003784 338 KFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANL 417 (795)
Q Consensus 338 efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~l 417 (795)
+|+++|+|+++++..+|+++|+.++++..+|+.|+||||+||+|+||++|+++|+...+..++|||+|||+|||++|+.+
T Consensus 303 ~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~l 382 (653)
T PTZ00009 303 RFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAIL 382 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHh
Confidence 99999999999999999999999999999999999999999999999999999987678899999999999999999999
Q ss_pred cCC--ccccCcceeEecceeeeEeeecCCccccCCCcceeeeeCCCCCCcceEEeeeec----ccEEEEEEeecCCCCCC
Q 003784 418 SDG--IKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHA----KDFEVSLAYESEDLLPP 491 (795)
Q Consensus 418 s~~--~~~~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~----~~~~i~i~y~~~~~~~~ 491 (795)
++. +++ +++.+.|++|++||++..++.+ .+|||+|+++|++++++|++. ..+.|.| |+|++.++.
T Consensus 383 s~~~~~~~-~~~~~~dv~p~slgi~~~~~~~-------~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i-~ege~~~~~ 453 (653)
T PTZ00009 383 TGEQSSQV-QDLLLLDVTPLSLGLETAGGVM-------TKLIERNTTIPTKKSQIFTTYADNQPGVLIQV-FEGERAMTK 453 (653)
T ss_pred cCCccccc-cceEEEeecccccCccccCCce-------EEEEeCCCcCCccceeEeEeecCCCceEEEEE-EecccccCC
Confidence 975 677 8899999999999998766544 389999999999999999764 3589999 999988766
Q ss_pred CCCCCceeEEEEcCCccchhhhccCCCCCCceEEEEEEEecCCceEEeeeeeEEEEEEEeeccccccccccccCCCCCCc
Q 003784 492 GATSPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNIS 571 (795)
Q Consensus 492 ~~~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (795)
+|..||+|.|.++++.+ +| .+ .|+|+|++|.||+|+|...+. . +
T Consensus 454 --~n~~lg~~~i~~i~~~~-----~g--~~-~i~v~f~id~~Gil~v~~~~~-----------------------~---t 497 (653)
T PTZ00009 454 --DNNLLGKFHLDGIPPAP-----RG--VP-QIEVTFDIDANGILNVSAEDK-----------------------S---T 497 (653)
T ss_pred --CCceEEEEEEcCCCCCC-----CC--Cc-eEEEEEEECCCCeEEEEEecc-----------------------c---C
Confidence 58899999999998875 23 34 799999999999998763210 0 0
Q ss_pred hhhhhhccccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHH
Q 003784 572 AETAAQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEA 651 (795)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~ 651 (795)
+ +. .+++++. ...+|+.++
T Consensus 498 -----------~------------------------------------------~~----~~~~i~~----~~~~ls~~~ 516 (653)
T PTZ00009 498 -----------G------------------------------------------KS----NKITITN----DKGRLSKAD 516 (653)
T ss_pred -----------C------------------------------------------ce----eeEEEee----ccccccHHH
Confidence 0 00 1334431 124699999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 003784 652 LVDAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEF 731 (795)
Q Consensus 652 ~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~g~~a~~~~~ 731 (795)
++++++++.+|..+|+.++++.++||+||+|||++|++|++++ |.++++++++++|.++++++++|||+ +++++.++|
T Consensus 517 i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~~~-~~~~~t~ee~~~l~~~l~~~~~wL~~-~~~~~~~~~ 594 (653)
T PTZ00009 517 IDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEK-VKGKLSDSDKATIEKAIDEALEWLEK-NQLAEKEEF 594 (653)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhhhh-hhccCCHHHHHHHHHHHHHHHHHHhc-CCchhHHHH
Confidence 9999999999999999999999999999999999999997654 99999999999999999999999995 578999999
Q ss_pred HHHHHHHHHhhhHHHHHHHh
Q 003784 732 QERLDVLKAIGDPVFFRFKE 751 (795)
Q Consensus 732 ~~k~~~L~~~~~~i~~r~~e 751 (795)
++|+++|+++++||..|+..
T Consensus 595 ~~kl~eL~~~~~pi~~r~~~ 614 (653)
T PTZ00009 595 EHKQKEVESVCNPIMTKMYQ 614 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999754
No 5
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.3e-97 Score=866.46 Aligned_cols=610 Identities=24% Similarity=0.450 Sum_probs=540.4
Q ss_pred CcEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceeEEEEe-CCcEEEcHhHHHHHhhCcchhhhhhhhhcCCCC
Q 003784 24 SAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFH-ESTRLLGEEASGIIARYPHRVYSQLRDMIGKPF 102 (795)
Q Consensus 24 ~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~v~~~-~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~ 102 (795)
..+||||||||||+||++ .+| .+.++.|..|+|.+||+|+|. ++++++|..|..++..+|.++++++||+||+++
T Consensus 2 ~~viGIDlGTt~s~va~~--~~g--~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~ 77 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVM--EGG--KPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRY 77 (668)
T ss_pred CcEEEEEeCCCcEEEEEE--ECC--eEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCc
Confidence 469999999999999999 666 346788999999999999996 578999999999999999999999999999987
Q ss_pred hhhHhhHhhcCCCceEEECCCCcEEEEeCC-CccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHH
Q 003784 103 KQVKHLIDSLYLPFNVVEDSRGAVSFKIDE-NNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLM 181 (795)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~ 181 (795)
.+++. ....+||.+..+++|.+.+.+.. ++.++|+++++++|++|++.++.+++.++.++|||||+||++.||++++
T Consensus 78 ~~~~~--~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~ 155 (668)
T PRK13410 78 DELDP--ESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATR 155 (668)
T ss_pred hhhHH--hhccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHH
Confidence 76554 34578999999888888888754 4689999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCC
Q 003784 182 QAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDA 261 (795)
Q Consensus 182 ~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~ 261 (795)
+||++|||++++||+||+|||++|+..+ ..+.++||||+||||||+|++++. ++.++|+++.|+.
T Consensus 156 ~Aa~~AGl~v~~li~EPtAAAlayg~~~---~~~~~vlV~DlGgGT~Dvsv~~~~------------~g~~~V~at~gd~ 220 (668)
T PRK13410 156 DAGRIAGLEVERILNEPTAAALAYGLDR---SSSQTVLVFDLGGGTFDVSLLEVG------------NGVFEVKATSGDT 220 (668)
T ss_pred HHHHHcCCCeEEEecchHHHHHHhcccc---CCCCEEEEEECCCCeEEEEEEEEc------------CCeEEEEEeecCC
Confidence 9999999999999999999999999875 245789999999999999999764 6789999999999
Q ss_pred CCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccC----cceEEEeeHH
Q 003784 262 ELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVD----IDFRSSITRQ 337 (795)
Q Consensus 262 ~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~l~~~----~d~~~~itr~ 337 (795)
.+||.+||.+|++|+.++|..+ ++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+ .++...|||+
T Consensus 221 ~lGG~dfD~~l~~~l~~~f~~~--~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~ 298 (668)
T PRK13410 221 QLGGNDFDKRIVDWLAEQFLEK--EGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRK 298 (668)
T ss_pred CCChhHHHHHHHHHHHHHHHhh--hCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHH
Confidence 9999999999999999999988 778888889999999999999999999999999999987643 4688899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHHHh
Q 003784 338 KFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANL 417 (795)
Q Consensus 338 efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~l 417 (795)
+|+++|+++++++..+|+++|+.+++.+.+|+.|+||||+||||+|++.|+++||. .+..++|||+|||+|||++|+.+
T Consensus 299 ~FE~l~~~l~~r~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~-~~~~~~npdeaVA~GAAi~aa~l 377 (668)
T PRK13410 299 QFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPR-EPNQNVNPDEVVAVGAAIQAGIL 377 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcCC-CcccCCCCchHHHHhHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999985 57789999999999999999999
Q ss_pred cCCccccCcceeEecceeeeEeeecCCccccCCCcceeeeeCCCCCCcceEEeeeec----ccEEEEEEeecCCCCCCCC
Q 003784 418 SDGIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHA----KDFEVSLAYESEDLLPPGA 493 (795)
Q Consensus 418 s~~~~~~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~----~~~~i~i~y~~~~~~~~~~ 493 (795)
++. + +++.+.|++|++||+++.++.+ .+|||+|+++|++++.+|.+. ..+.|.+ |+|++.++.
T Consensus 378 s~~--~-~~~~l~Dv~p~slgie~~~g~~-------~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v-~qGe~~~~~-- 444 (668)
T PRK13410 378 AGE--L-KDLLLLDVTPLSLGLETIGGVM-------KKLIPRNTTIPVRRSDVFSTSENNQSSVEIHV-WQGEREMAS-- 444 (668)
T ss_pred ccc--c-cceeEEeeccccccceecCCee-------EEEEeCCCcccccccccceeccCCCcEEEEEE-Eeecccccc--
Confidence 984 4 6899999999999999887654 389999999999999999764 3688888 999988776
Q ss_pred CCCceeEEEEcCCccchhhhccCCCCCCceEEEEEEEecCCceEEeeeeeEEEEEEEeeccccccccccccCCCCCCchh
Q 003784 494 TSPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAE 573 (795)
Q Consensus 494 ~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (795)
+|..||+|.|.|+++++ .| .+ +|+|+|++|.||+|+|+..+.. +
T Consensus 445 ~n~~lg~~~l~~i~~~~-----~g--~~-~I~v~f~id~nGiL~V~a~d~~--------------------------t-- 488 (668)
T PRK13410 445 DNKSLGRFKLSGIPPAP-----RG--VP-QVQVAFDIDANGILQVSATDRT--------------------------T-- 488 (668)
T ss_pred CCceEEEEEEeCCCCCC-----CC--CC-eEEEEEEECCCcEEEEEEEEcC--------------------------C--
Confidence 58899999999999876 33 45 8999999999999988643210 0
Q ss_pred hhhhccccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHHHH
Q 003784 574 TAAQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALV 653 (795)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~~~ 653 (795)
+ ++ ..++++ . ..+|+.++++
T Consensus 489 ---------g------------------------------------------~~----~~~~i~--~---~~~ls~~ei~ 508 (668)
T PRK13410 489 ---------G------------------------------------------RE----QSVTIQ--G---ASTLSEQEVN 508 (668)
T ss_pred ---------C------------------------------------------ce----eeeeec--c---cccCCHHHHH
Confidence 0 00 023333 1 2469999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHHHhhccC-ccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 003784 654 DAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFET-SEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQ 732 (795)
Q Consensus 654 ~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~-~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~g~~a~~~~~~ 732 (795)
++++++++|..+|+.++++.++||+||+|||++|++|.+ ...|..++++++|+.|..+|++.++|||+++.+..++.|.
T Consensus 509 ~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~~~~~~~~~~~ 588 (668)
T PRK13410 509 RMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRELDLAVA 588 (668)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999975 2238999999999999999999999999998888899999
Q ss_pred HHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHH
Q 003784 733 ERLDVLKAIGDPVFFRFKELTARPASVEHAQKYLGQ 768 (795)
Q Consensus 733 ~k~~~L~~~~~~i~~r~~e~~~rp~a~~~~~~~~~~ 768 (795)
++++.|+.++.+|..|+.| .-..-++.+++.+..
T Consensus 589 ~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 622 (668)
T PRK13410 589 DLQEALYGLNREVRAEYKE--EDEGPLQGIKNTFGS 622 (668)
T ss_pred HHHHHHHHHHHHHHHHHhh--cccchhhhHHhhccc
Confidence 9999999999999999998 333445555555543
No 6
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=2.4e-96 Score=858.80 Aligned_cols=591 Identities=24% Similarity=0.444 Sum_probs=528.2
Q ss_pred CcEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceeEEEEeC-CcEEEcHhHHHHHhhCcchhhhhhhhhcCCCC
Q 003784 24 SAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHE-STRLLGEEASGIIARYPHRVYSQLRDMIGKPF 102 (795)
Q Consensus 24 ~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~v~~~~-~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~ 102 (795)
..+||||||||||+||++ .+| . +.++.|.+|+|.+||+|+|.+ +++++|..|..++.++|.++++++||+||+.+
T Consensus 2 ~~viGIDlGTt~s~va~~--~~g-~-~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~ 77 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVL--EGG-K-PIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRW 77 (653)
T ss_pred CcEEEEEeCcccEEEEEE--ECC-E-EEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCc
Confidence 369999999999999999 666 3 468999999999999999964 68999999999999999999999999999987
Q ss_pred hhhHhhHhhcCCCceEEECCCCcEEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHHH
Q 003784 103 KQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQ 182 (795)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~ 182 (795)
.+... ....+||.++...++.+.+.+. +..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++
T Consensus 78 ~d~~~--~~~~~~~~~v~~~~~~~~~~i~-~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 154 (653)
T PRK13411 78 DDTEE--ERSRVPYTCVKGRDDTVNVQIR-GRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKD 154 (653)
T ss_pred cchhH--HhhcCCceEEecCCCceEEEEC-CEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHH
Confidence 66543 3457899999888888888885 47899999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCCC
Q 003784 183 AAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAE 262 (795)
Q Consensus 183 Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~ 262 (795)
||++|||++++||+||+|||++|++.+. ..+.++|||||||||||+|++++. ++.++|+++.|+.+
T Consensus 155 Aa~~AGl~v~~li~EPtAAAl~y~~~~~--~~~~~vlV~DlGgGT~dvsi~~~~------------~~~~~V~at~gd~~ 220 (653)
T PRK13411 155 AGTIAGLEVLRIINEPTAAALAYGLDKQ--DQEQLILVFDLGGGTFDVSILQLG------------DGVFEVKATAGNNH 220 (653)
T ss_pred HHHHcCCCeEEEecchHHHHHHhccccc--CCCCEEEEEEcCCCeEEEEEEEEe------------CCEEEEEEEecCCC
Confidence 9999999999999999999999998652 335789999999999999999764 67899999999999
Q ss_pred CchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccC----cceEEEeeHHH
Q 003784 263 LGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVD----IDFRSSITRQK 338 (795)
Q Consensus 263 lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~l~~~----~d~~~~itr~e 338 (795)
+||.+||+.|++|+.++|..+ ++.++..+++++.+|+.+||++|+.||.+..+.++++++..+ .++.+.|||++
T Consensus 221 LGG~dfD~~l~~~l~~~f~~~--~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~ 298 (653)
T PRK13411 221 LGGDDFDNCIVDWLVENFQQQ--EGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAK 298 (653)
T ss_pred cCHHHHHHHHHHHHHHHHHHh--hCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHH
Confidence 999999999999999999988 778888899999999999999999999999999999887543 57889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHHHhc
Q 003784 339 FEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLS 418 (795)
Q Consensus 339 fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~ls 418 (795)
|+++|+|+++++..+|+++|+.+++.+++|+.|+||||+||+|+||+.|+++||...+..++|||+|||+|||++|+.++
T Consensus 299 fe~l~~~l~~~~~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~ 378 (653)
T PRK13411 299 FEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLG 378 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999876788899999999999999999999
Q ss_pred CCccccCcceeEecceeeeEeeecCCccccCCCcceeeeeCCCCCCcceEEeeeecc----cEEEEEEeecCCCCCCCCC
Q 003784 419 DGIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHAK----DFEVSLAYESEDLLPPGAT 494 (795)
Q Consensus 419 ~~~~~~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~~----~~~i~i~y~~~~~~~~~~~ 494 (795)
+. + +++.+.|++|++||+++.++.+ .+|||+|+++|++++.+|.+.. .+.|.+ |+|++.++. +
T Consensus 379 ~~--~-~~~~~~dv~p~slgi~~~~~~~-------~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v-~~ge~~~~~--~ 445 (653)
T PRK13411 379 GE--V-KDLLLLDVTPLSLGIETLGEVF-------TKIIERNTTIPTSKSQVFSTATDGQTSVEIHV-LQGERAMAK--D 445 (653)
T ss_pred CC--c-cceeeeecccceeeEEecCCce-------EEEEECCCcccceeeEEEEeccCCCeEEEEEE-EEecCcccc--c
Confidence 75 4 7899999999999999887654 3899999999999999998743 488888 999988876 5
Q ss_pred CCceeEEEEcCCccchhhhccCCCCCCceEEEEEEEecCCceEEeeeeeEEEEEEEeeccccccccccccCCCCCCchhh
Q 003784 495 SPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAET 574 (795)
Q Consensus 495 ~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (795)
|..||.|.+.|+++++ .| .+ .|+|+|++|.||+|+|+..+.. +
T Consensus 446 n~~lg~~~l~~i~~~~-----~g--~~-~i~v~f~id~~Gil~v~a~d~~--------------------------t--- 488 (653)
T PRK13411 446 NKSLGKFLLTGIPPAP-----RG--VP-QIEVSFEIDVNGILKVSAQDQG--------------------------T--- 488 (653)
T ss_pred CceeeEEEEcCCCCCC-----CC--Cc-cEEEEEEECCCCeEEEEEeecc--------------------------C---
Confidence 8899999999999875 23 45 8999999999999987643200 0
Q ss_pred hhhccccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHHHHH
Q 003784 575 AAQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALVD 654 (795)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~~~~ 654 (795)
+ ++ ..+.++. ..+||.+++++
T Consensus 489 --------~------------------------------------------~~----~~~~i~~-----~~~ls~~ei~~ 509 (653)
T PRK13411 489 --------G------------------------------------------RE----QSIRITN-----TGGLSSNEIER 509 (653)
T ss_pred --------C------------------------------------------ce----EeeEEec-----cccchHHHHHH
Confidence 0 00 0233431 23699999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH
Q 003784 655 AEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQER 734 (795)
Q Consensus 655 ~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~g~~a~~~~~~~k 734 (795)
+++++++|..+|+.++++.++||+||+|||.+|+.|++ +.+++++++|+.+.+.+++.++||+++ +++.++|+++
T Consensus 510 ~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~---~~~~~~~~er~~i~~~l~~~~~wL~~~--~~~~~~~~~~ 584 (653)
T PRK13411 510 MRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLKE---NGELISEELKQRAEQKVEQLEAALTDP--NISLEELKQQ 584 (653)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHH
Confidence 99999999999999999999999999999999999974 578999999999999999999999983 5789999999
Q ss_pred HHHHHHhhhHHHHHHHh
Q 003784 735 LDVLKAIGDPVFFRFKE 751 (795)
Q Consensus 735 ~~~L~~~~~~i~~r~~e 751 (795)
+++|++++.++..++.+
T Consensus 585 ~~el~~~~~~i~~~~y~ 601 (653)
T PRK13411 585 LEEFQQALLAIGAEVYQ 601 (653)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998653
No 7
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=3.2e-96 Score=857.97 Aligned_cols=590 Identities=24% Similarity=0.444 Sum_probs=526.8
Q ss_pred CCCCcEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceeEEEEe-CCcEEEcHhHHHHHhhCcchhhhhhhhhcC
Q 003784 21 HSQSAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFH-ESTRLLGEEASGIIARYPHRVYSQLRDMIG 99 (795)
Q Consensus 21 ~~~~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~v~~~-~~~~~~G~~A~~~~~~~p~~~~~~~K~llG 99 (795)
..++.+||||||||||+||++ .+| +++++.|.+|+|.+||+|+|. ++++++|..|..++.++|.++++++||+||
T Consensus 38 ~~~~~viGIDlGTt~s~va~~--~~~--~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG 113 (663)
T PTZ00400 38 KATGDIVGIDLGTTNSCVAIM--EGS--QPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIG 113 (663)
T ss_pred hhcCcEEEEEECcccEEEEEE--eCC--eeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcC
Confidence 334579999999999999999 544 689999999999999999997 468999999999999999999999999999
Q ss_pred CCChhhHhhHhhcCCCceEEECCCCcEEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHH
Q 003784 100 KPFKQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKG 179 (795)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~a 179 (795)
+.+.+.........+||.++.+.++.+.+.+. ++.++|+++++++|++|++.++.+++.++.++|||||+||++.||++
T Consensus 114 ~~~~d~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a 192 (663)
T PTZ00400 114 RRYDEDATKKEQKILPYKIVRASNGDAWIEAQ-GKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQA 192 (663)
T ss_pred CCcCcHHHHhhhccCCeEEEecCCCceEEEEC-CEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHH
Confidence 97654433345567999999888888888875 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEecc
Q 003784 180 LMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRW 259 (795)
Q Consensus 180 l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~ 259 (795)
+++||++|||++++||+||+|||++|+... ..+.++|||||||||||+|++++. .+.++|+++.|
T Consensus 193 ~~~Aa~~AGl~v~~li~EptAAAlay~~~~---~~~~~vlV~DlGgGT~DvSv~~~~------------~g~~~v~a~~g 257 (663)
T PTZ00400 193 TKDAGKIAGLDVLRIINEPTAAALAFGMDK---NDGKTIAVYDLGGGTFDISILEIL------------GGVFEVKATNG 257 (663)
T ss_pred HHHHHHHcCCceEEEeCchHHHHHHhcccc---CCCcEEEEEeCCCCeEEEEEEEec------------CCeeEEEeccc
Confidence 999999999999999999999999999865 346899999999999999999764 67899999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccC----cceEEEee
Q 003784 260 DAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVD----IDFRSSIT 335 (795)
Q Consensus 260 ~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~l~~~----~d~~~~it 335 (795)
+..+||++||..|++|+.++|..+ ++.++..+++++.+|+.+||++|+.||.+.++.+.++.+..+ .++.++||
T Consensus 258 d~~LGG~d~D~~l~~~l~~~f~~~--~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~it 335 (663)
T PTZ00400 258 NTSLGGEDFDQRILNYLIAEFKKQ--QGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLS 335 (663)
T ss_pred CCCcCHHHHHHHHHHHHHHHhhhh--cCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEEC
Confidence 999999999999999999999988 777888889999999999999999999999999999877654 47899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHH
Q 003784 336 RQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAA 415 (795)
Q Consensus 336 r~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa 415 (795)
|++|+++|+|+++++..+++++|+.+++.+.+|+.|+||||+||+|+|++.|+++||. ++..++|||+|||+|||++|+
T Consensus 336 R~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~-~~~~~~npdeaVA~GAAi~aa 414 (663)
T PTZ00400 336 RAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGK-EPSKGVNPDEAVAMGAAIQAG 414 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCC-CcccCCCCccceeeccHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999986 567899999999999999999
Q ss_pred HhcCCccccCcceeEecceeeeEeeecCCccccCCCcceeeeeCCCCCCcceEEeeeecc----cEEEEEEeecCCCCCC
Q 003784 416 NLSDGIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHAK----DFEVSLAYESEDLLPP 491 (795)
Q Consensus 416 ~ls~~~~~~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~~----~~~i~i~y~~~~~~~~ 491 (795)
.+++. + +++.+.|++|++||+++.++.+ .+|||+|+++|++++.+|.+.. .+.|.| |+|++.++.
T Consensus 415 ~l~~~--~-~~~~~~dv~p~slgi~~~~g~~-------~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i-~ege~~~~~ 483 (663)
T PTZ00400 415 VLKGE--I-KDLLLLDVTPLSLGIETLGGVF-------TRLINRNTTIPTKKSQVFSTAADNQTQVGIKV-FQGEREMAA 483 (663)
T ss_pred hhcCC--c-cceEEEeccccceEEEecCCee-------EEEEecCccCCccceeeeeeccCCCceEEEEE-EEecCccCC
Confidence 99875 3 6789999999999999887654 3899999999999999998753 588888 999988876
Q ss_pred CCCCCceeEEEEcCCccchhhhccCCCCCCceEEEEEEEecCCceEEeeeeeEEEEEEEeeccccccccccccCCCCCCc
Q 003784 492 GATSPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNIS 571 (795)
Q Consensus 492 ~~~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (795)
+|..||+|.|.|+++.+ .| .+ .|+|+|++|.||+|.|+..+.. +
T Consensus 484 --~n~~lg~~~i~~i~~~~-----~g--~~-~i~v~f~id~~Gil~v~a~~~~--------------------------~ 527 (663)
T PTZ00400 484 --DNKLLGQFDLVGIPPAP-----RG--VP-QIEVTFDVDANGIMNISAVDKS--------------------------T 527 (663)
T ss_pred --cCceeEEEEEcCCCCCC-----CC--Cc-eEEEEEEECCCCCEEEEEEecc--------------------------C
Confidence 58899999999998875 23 45 8999999999999987643200 0
Q ss_pred hhhhhhccccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHH
Q 003784 572 AETAAQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEA 651 (795)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~ 651 (795)
+ + ..+++++. ..+||.++
T Consensus 528 -----------~------------------------------------------~----~~~~~i~~-----~~~ls~~e 545 (663)
T PTZ00400 528 -----------G------------------------------------------K----KQEITIQS-----SGGLSDEE 545 (663)
T ss_pred -----------C------------------------------------------c----EEEEEeec-----cccccHHH
Confidence 0 0 01344431 24699999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 003784 652 LVDAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEF 731 (795)
Q Consensus 652 ~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~g~~a~~~~~ 731 (795)
++++++++++|..+|+.++++.++||+||+|||.+|+.|.+ |.+++++++++.+.+.+++.++|||++ +.++|
T Consensus 546 i~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~e---~~~~~s~~ere~i~~~l~~~~~WL~~~----d~~~i 618 (663)
T PTZ00400 546 IEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLSD---LKDKISDADKDELKQKITKLRSTLSSE----DVDSI 618 (663)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHHhcC----CHHHH
Confidence 99999999999999999999999999999999999999963 889999999999999999999999976 47899
Q ss_pred HHHHHHHHHhhhHHHHHH
Q 003784 732 QERLDVLKAIGDPVFFRF 749 (795)
Q Consensus 732 ~~k~~~L~~~~~~i~~r~ 749 (795)
++++++|++++.++..++
T Consensus 619 ~~k~~eL~~~l~~l~~k~ 636 (663)
T PTZ00400 619 KDKTKQLQEASWKISQQA 636 (663)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999865
No 8
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=2e-94 Score=844.32 Aligned_cols=587 Identities=25% Similarity=0.463 Sum_probs=525.8
Q ss_pred CcEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceeEEEEe-CCcEEEcHhHHHHHhhCcchhhhhhhhhcCCCC
Q 003784 24 SAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFH-ESTRLLGEEASGIIARYPHRVYSQLRDMIGKPF 102 (795)
Q Consensus 24 ~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~v~~~-~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~ 102 (795)
+.+||||||||||+||++ .+| .++++.|.+|+|.+||+|+|. ++++++|..|..+..++|.++++++||+||+++
T Consensus 2 ~~viGIDlGTt~s~va~~--~~g--~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~ 77 (627)
T PRK00290 2 GKIIGIDLGTTNSCVAVM--EGG--EPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRRD 77 (627)
T ss_pred CcEEEEEeCcccEEEEEE--ECC--EEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCCc
Confidence 369999999999999999 666 357999999999999999996 679999999999999999999999999999986
Q ss_pred hhhHhhHhhcCCCceEEECCCCcEEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHHH
Q 003784 103 KQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQ 182 (795)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~ 182 (795)
+.++.. ...+||.++...++...+.+. |+.++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++
T Consensus 78 ~~~~~~--~~~~p~~~~~~~~~~~~~~~~-~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~ 154 (627)
T PRK00290 78 EEVQKD--IKLVPYKIVKADNGDAWVEID-GKKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKD 154 (627)
T ss_pred hHHHHH--hhcCCeEEEEcCCCceEEEEC-CEEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHH
Confidence 666553 347999999988888888875 57899999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCCC
Q 003784 183 AAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAE 262 (795)
Q Consensus 183 Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~ 262 (795)
||++|||++++||+||+|||++|+..+. .+.++|||||||||||+|++++. .+.++++++.|+..
T Consensus 155 Aa~~AGl~v~~li~EptAAAl~y~~~~~---~~~~vlV~D~GggT~dvsv~~~~------------~~~~~vla~~gd~~ 219 (627)
T PRK00290 155 AGKIAGLEVLRIINEPTAAALAYGLDKK---GDEKILVYDLGGGTFDVSILEIG------------DGVFEVLSTNGDTH 219 (627)
T ss_pred HHHHcCCceEEEecchHHHHHHhhhccC---CCCEEEEEECCCCeEEEEEEEEe------------CCeEEEEEecCCCC
Confidence 9999999999999999999999998762 45899999999999999999774 67899999999999
Q ss_pred CchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccC----cceEEEeeHHH
Q 003784 263 LGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVD----IDFRSSITRQK 338 (795)
Q Consensus 263 lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~l~~~----~d~~~~itr~e 338 (795)
+||.+||.+|++|+.++|+.+ ++.++..+++++.+|+.+||++|+.||.+..+.++++.++.+ .++.+.|||++
T Consensus 220 lGG~d~D~~l~~~~~~~~~~~--~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~ 297 (627)
T PRK00290 220 LGGDDFDQRIIDYLADEFKKE--NGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAK 297 (627)
T ss_pred cChHHHHHHHHHHHHHHHHHh--hCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHH
Confidence 999999999999999999998 778888899999999999999999999999999999987643 67889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHHHhc
Q 003784 339 FEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLS 418 (795)
Q Consensus 339 fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~ls 418 (795)
|+++|+++++++..+|+++|+.+++...+|+.|+||||+||+|+|++.|+++||. .+..++|||+|||+|||++|+.++
T Consensus 298 fe~l~~~l~~~~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~-~~~~~~npdeava~GAa~~aa~l~ 376 (627)
T PRK00290 298 FEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGK-EPNKGVNPDEVVAIGAAIQGGVLA 376 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCC-CCCcCcCChHHHHHhHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999986 677899999999999999999998
Q ss_pred CCccccCcceeEecceeeeEeeecCCccccCCCcceeeeeCCCCCCcceEEeeeecc----cEEEEEEeecCCCCCCCCC
Q 003784 419 DGIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHAK----DFEVSLAYESEDLLPPGAT 494 (795)
Q Consensus 419 ~~~~~~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~~----~~~i~i~y~~~~~~~~~~~ 494 (795)
+. + +++.+.|++|++||+++.++.+ .+|||+|+++|++++.+|.+.. .+.|.+ |+|++.++. +
T Consensus 377 ~~--~-~~~~~~d~~~~slgi~~~~~~~-------~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v-~~ge~~~~~--~ 443 (627)
T PRK00290 377 GD--V-KDVLLLDVTPLSLGIETLGGVM-------TKLIERNTTIPTKKSQVFSTAADNQPAVTIHV-LQGEREMAA--D 443 (627)
T ss_pred CC--c-cceeeeeccceEEEEEecCCeE-------EEEecCCCcCCccceEEEEecCCCcceEEEEE-EEecccccC--c
Confidence 74 4 7899999999999999877654 3899999999999999998754 478888 999987766 5
Q ss_pred CCceeEEEEcCCccchhhhccCCCCCCceEEEEEEEecCCceEEeeeeeEEEEEEEeeccccccccccccCCCCCCchhh
Q 003784 495 SPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAET 574 (795)
Q Consensus 495 ~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (795)
|..||+|.|.++++.+ +| .+ .|+|+|++|.||+|+|...+.. +
T Consensus 444 ~~~lg~~~i~~~~~~~-----~g--~~-~i~v~f~~d~~gil~v~a~~~~--------------------------~--- 486 (627)
T PRK00290 444 NKSLGRFNLTGIPPAP-----RG--VP-QIEVTFDIDANGIVHVSAKDKG--------------------------T--- 486 (627)
T ss_pred CceEEEEEECCCCCCC-----CC--Cc-eEEEEEEECCCceEEEEEEEcc--------------------------C---
Confidence 8899999999998875 23 34 7999999999999987643200 0
Q ss_pred hhhccccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHHHHH
Q 003784 575 AAQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALVD 654 (795)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~~~~ 654 (795)
+ + . ..++++. ..+|+.+++++
T Consensus 487 --------~------------------------------------------~--~--~~~~i~~-----~~~ls~e~i~~ 507 (627)
T PRK00290 487 --------G------------------------------------------K--E--QSITITA-----SSGLSDEEIER 507 (627)
T ss_pred --------C------------------------------------------c--e--eEEEecc-----ccccCHHHHHH
Confidence 0 0 0 0233321 24699999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH
Q 003784 655 AEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQER 734 (795)
Q Consensus 655 ~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~g~~a~~~~~~~k 734 (795)
+++++.+|..+|+.++++.++||+||+|||.+|+.|++ +..++++++|++|.+.|++.++||+++ +.++|+++
T Consensus 508 ~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~~---~~~~~~~~e~~~i~~~l~~~~~wL~~~----~~~~i~~k 580 (627)
T PRK00290 508 MVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLKE---LGDKVPADEKEKIEAAIKELKEALKGE----DKEAIKAK 580 (627)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHH
Confidence 99999999999999999999999999999999999972 788999999999999999999999975 67899999
Q ss_pred HHHHHHhhhHHHHHHHh
Q 003784 735 LDVLKAIGDPVFFRFKE 751 (795)
Q Consensus 735 ~~~L~~~~~~i~~r~~e 751 (795)
+++|+++++++..|+.+
T Consensus 581 ~~~L~~~~~~~~~~~~~ 597 (627)
T PRK00290 581 TEELTQASQKLGEAMYQ 597 (627)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998754
No 9
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=2.9e-94 Score=841.63 Aligned_cols=589 Identities=25% Similarity=0.449 Sum_probs=521.7
Q ss_pred CCcEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceeEEEEe-CCcEEEcHhHHHHHhhCcchhhhhhhhhcCCC
Q 003784 23 QSAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFH-ESTRLLGEEASGIIARYPHRVYSQLRDMIGKP 101 (795)
Q Consensus 23 ~~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~v~~~-~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~ 101 (795)
+..+||||||||||+||++ .+| .+++++|.+|+|.+||+|+|. ++++++|..|..++.++|.++++++|||||++
T Consensus 38 ~~~viGIDlGTt~s~va~~--~~g--~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~ 113 (673)
T PLN03184 38 AEKVVGIDLGTTNSAVAAM--EGG--KPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRK 113 (673)
T ss_pred CCCEEEEEeCcCcEEEEEE--ECC--eEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCC
Confidence 4469999999999999999 666 356999999999999999996 46899999999999999999999999999998
Q ss_pred ChhhHhhHhhcCCCceEEECCCCcEEEEeC-CCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHH
Q 003784 102 FKQVKHLIDSLYLPFNVVEDSRGAVSFKID-ENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGL 180 (795)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al 180 (795)
+.+++. ....++|.++.+.++.+.+.+. .+..++|+++++++|++|++.++.+++.++.++|||||+||++.||+++
T Consensus 114 ~~d~~~--~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~ 191 (673)
T PLN03184 114 MSEVDE--ESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTAT 191 (673)
T ss_pred cchhhh--hhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHH
Confidence 766543 4557899999888888888775 3578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccC
Q 003784 181 MQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWD 260 (795)
Q Consensus 181 ~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~ 260 (795)
++||++|||++++||+||+|||++|+..+ ..+.++|||||||||||+|++++. .+.++|+++.|+
T Consensus 192 ~~Aa~~AGl~v~~li~EPtAAAlayg~~~---~~~~~vlV~DlGgGT~DvSi~~~~------------~~~~eVla~~gd 256 (673)
T PLN03184 192 KDAGRIAGLEVLRIINEPTAASLAYGFEK---KSNETILVFDLGGGTFDVSVLEVG------------DGVFEVLSTSGD 256 (673)
T ss_pred HHHHHHCCCCeEEEeCcHHHHHHHhhccc---CCCCEEEEEECCCCeEEEEEEEec------------CCEEEEEEecCC
Confidence 99999999999999999999999999875 235789999999999999999764 678999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeeccc----CcceEEEeeH
Q 003784 261 AELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYV----DIDFRSSITR 336 (795)
Q Consensus 261 ~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~l~~----~~d~~~~itr 336 (795)
.++||++||+.|++|+.++|..+ ++.++..+++++.+|+.+||++|+.||.+.++.+.++++.. +.++.+.|||
T Consensus 257 ~~LGG~dfD~~L~~~~~~~f~~~--~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR 334 (673)
T PLN03184 257 THLGGDDFDKRIVDWLASNFKKD--EGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTR 334 (673)
T ss_pred CccCHHHHHHHHHHHHHHHHHhh--cCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECH
Confidence 99999999999999999999988 77888889999999999999999999999999999987653 3578899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHHH
Q 003784 337 QKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAAN 416 (795)
Q Consensus 337 ~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~ 416 (795)
++|+++|+++++++..+|+++|+.+++.+.+|+.|+||||+||||.||++|+++||. .+..++|||+|||+|||++|+.
T Consensus 335 ~~fe~l~~~l~~r~~~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~-~~~~~~npdeaVA~GAAi~aa~ 413 (673)
T PLN03184 335 AKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGK-DPNVTVNPDEVVALGAAVQAGV 413 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCC-CcccccCcchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999986 5678899999999999999999
Q ss_pred hcCCccccCcceeEecceeeeEeeecCCccccCCCcceeeeeCCCCCCcceEEeeeecc----cEEEEEEeecCCCCCCC
Q 003784 417 LSDGIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHAK----DFEVSLAYESEDLLPPG 492 (795)
Q Consensus 417 ls~~~~~~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~~----~~~i~i~y~~~~~~~~~ 492 (795)
+++. + +++.+.|++|++||+++.++.+ .+|||+|+++|++++.+|.+.. .+.|.+ |+|++.++.
T Consensus 414 ls~~--~-~~~~~~dv~p~slgi~~~~~~~-------~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i-~~ge~~~~~- 481 (673)
T PLN03184 414 LAGE--V-SDIVLLDVTPLSLGLETLGGVM-------TKIIPRNTTLPTSKSEVFSTAADGQTSVEINV-LQGEREFVR- 481 (673)
T ss_pred hccC--c-cceEEEecccccceEEecCCee-------EEEEeCCCccceecceEeeeecCCCcEEEEEE-Eeecccccc-
Confidence 9974 4 6789999999999999987654 3899999999999999998753 467777 999988776
Q ss_pred CCCCceeEEEEcCCccchhhhccCCCCCCceEEEEEEEecCCceEEeeeeeEEEEEEEeeccccccccccccCCCCCCch
Q 003784 493 ATSPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISA 572 (795)
Q Consensus 493 ~~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (795)
+|..||+|.|.++++.+ +| .+ +|+|+|++|.||+|.|...+.- +
T Consensus 482 -~n~~lg~~~i~~i~~~~-----~g--~~-~i~v~f~id~~GiL~V~a~~~~--------------------------t- 525 (673)
T PLN03184 482 -DNKSLGSFRLDGIPPAP-----RG--VP-QIEVKFDIDANGILSVSATDKG--------------------------T- 525 (673)
T ss_pred -cCceEEEEEEeCCCCCC-----CC--Cc-eEEEEEEeCCCCeEEEEEEecC--------------------------C-
Confidence 58999999999998875 23 34 8999999999999987643210 0
Q ss_pred hhhhhccccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHHH
Q 003784 573 ETAAQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEAL 652 (795)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~~ 652 (795)
+ + ...++++ ...+||.+++
T Consensus 526 ----------~------------------------------------------~----~~~~~i~-----~~~~ls~eei 544 (673)
T PLN03184 526 ----------G------------------------------------------K----KQDITIT-----GASTLPKDEV 544 (673)
T ss_pred ----------C------------------------------------------e----EEEEEec-----ccccccHHHH
Confidence 0 0 0123333 1246999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 003784 653 VDAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQ 732 (795)
Q Consensus 653 ~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~g~~a~~~~~~ 732 (795)
+++++++++|..+|+.++++.++||+||+|||++|++|.+ |.++++++++++++++|++.++|||.+ +.++++
T Consensus 545 ~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~e---~~~~~~~eer~~l~~~l~~~e~wL~~~----d~~~ik 617 (673)
T PLN03184 545 ERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLKE---LGDKVPADVKEKVEAKLKELKDAIASG----STQKMK 617 (673)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHHhcC----CHHHHH
Confidence 9999999999999999999999999999999999999962 889999999999999999999999976 367888
Q ss_pred HHHHHHHHhhhHHHHHHHh
Q 003784 733 ERLDVLKAIGDPVFFRFKE 751 (795)
Q Consensus 733 ~k~~~L~~~~~~i~~r~~e 751 (795)
+++++|.+.+.++..++..
T Consensus 618 ~~~~~l~~~l~~l~~~~~~ 636 (673)
T PLN03184 618 DAMAALNQEVMQIGQSLYN 636 (673)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888888888888876543
No 10
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=4.2e-94 Score=832.95 Aligned_cols=591 Identities=24% Similarity=0.411 Sum_probs=526.1
Q ss_pred CCcEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceeEEEEeCCcEEEcHhHHHHHhhCcchhhhhhhhhcCCCC
Q 003784 23 QSAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHESTRLLGEEASGIIARYPHRVYSQLRDMIGKPF 102 (795)
Q Consensus 23 ~~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~ 102 (795)
.+.+||||||||||+||++ .+| +++++.|..|.|.+||+|+|.++++++|..|..++..+|.++++++||+||+++
T Consensus 26 ~~~viGIDLGTTnS~vA~~--~~~--~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~ 101 (657)
T PTZ00186 26 QGDVIGVDLGTTYSCVATM--DGD--KARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRF 101 (657)
T ss_pred cceEEEEEeCcCeEEEEEE--eCC--ceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhcccc
Confidence 4469999999999999999 555 568999999999999999999999999999999999999999999999999976
Q ss_pred hhhHhhHhhcCCCceEEECCCCcEEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHHH
Q 003784 103 KQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQ 182 (795)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~ 182 (795)
.+.........+||.++.+.++...+...+++.++|+++++++|++|++.++.+++.++.++|||||+||++.||+++++
T Consensus 102 ~d~~v~~~~~~~p~~vv~~~~~~~~i~~~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~ 181 (657)
T PTZ00186 102 EDEHIQKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKD 181 (657)
T ss_pred ccHHHHHhhccCcEEEEEcCCCceEEEeCCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHH
Confidence 54443445567999999888888888776678899999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCCC
Q 003784 183 AAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAE 262 (795)
Q Consensus 183 Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~ 262 (795)
||++|||++++||+||+|||++|+... ..+.++||||+||||||+||+++. .+.++|+++.|+.+
T Consensus 182 Aa~~AGl~v~rlInEPtAAAlayg~~~---~~~~~vlV~DlGGGT~DvSil~~~------------~g~~~V~at~Gd~~ 246 (657)
T PTZ00186 182 AGTIAGLNVIRVVNEPTAAALAYGMDK---TKDSLIAVYDLGGGTFDISVLEIA------------GGVFEVKATNGDTH 246 (657)
T ss_pred HHHHcCCCeEEEEcChHHHHHHHhccC---CCCCEEEEEECCCCeEEEEEEEEe------------CCEEEEEEecCCCC
Confidence 999999999999999999999999865 235799999999999999999764 78899999999999
Q ss_pred CchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccC----cceEEEeeHHH
Q 003784 263 LGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVD----IDFRSSITRQK 338 (795)
Q Consensus 263 lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~l~~~----~d~~~~itr~e 338 (795)
|||++||.+|++|+.++|..+ ++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+ .++.+.|||++
T Consensus 247 LGG~DfD~~l~~~~~~~f~~~--~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~e 324 (657)
T PTZ00186 247 LGGEDFDLALSDYILEEFRKT--SGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSK 324 (657)
T ss_pred CCchhHHHHHHHHHHHHHhhh--cCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHH
Confidence 999999999999999999988 778888889999999999999999999999999999876542 45889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHHHhc
Q 003784 339 FEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLS 418 (795)
Q Consensus 339 fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~ls 418 (795)
|+++|+++++++..+++++|+++++.+.+|+.|+||||+||||.||++|+++||. .+..++|||||||+|||++|+.++
T Consensus 325 fe~l~~~l~~r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~-~~~~~~nPdeaVA~GAAi~a~~l~ 403 (657)
T PTZ00186 325 FEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQK-DPFRGVNPDEAVALGAATLGGVLR 403 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCC-CccccCCCchHHHHhHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999986 456889999999999999999999
Q ss_pred CCccccCcceeEecceeeeEeeecCCccccCCCcceeeeeCCCCCCcceEEeeeecc----cEEEEEEeecCCCCCCCCC
Q 003784 419 DGIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHAK----DFEVSLAYESEDLLPPGAT 494 (795)
Q Consensus 419 ~~~~~~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~~----~~~i~i~y~~~~~~~~~~~ 494 (795)
+. + +++.+.|++|++|||++.++.+ .+|||+|++||++++..|++.. .+.|.| |+|++.++. +
T Consensus 404 ~~--~-~~~~l~Dv~p~slgie~~~g~~-------~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i-~qGe~~~~~--~ 470 (657)
T PTZ00186 404 GD--V-KGLVLLDVTPLSLGIETLGGVF-------TRMIPKNTTIPTKKSQTFSTAADNQTQVGIKV-FQGEREMAA--D 470 (657)
T ss_pred cc--c-CceEEEeeccccccceecCCEE-------EEEEeCCCEeeEEEeeccccccCCCceEEEEE-EEecccccc--c
Confidence 75 3 6789999999999999887754 3899999999999999998753 589999 999998877 6
Q ss_pred CCceeEEEEcCCccchhhhccCCCCCCceEEEEEEEecCCceEEeeeeeEEEEEEEeeccccccccccccCCCCCCchhh
Q 003784 495 SPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAET 574 (795)
Q Consensus 495 ~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (795)
|..||+|.+.|+|+.+ +| .| .|+|+|++|.||+|+|+..+...
T Consensus 471 n~~lg~~~l~~ip~~~-----~G--~~-~I~Vtf~iD~nGiL~V~a~d~~t----------------------------- 513 (657)
T PTZ00186 471 NQMMGQFDLVGIPPAP-----RG--VP-QIEVTFDIDANGICHVTAKDKAT----------------------------- 513 (657)
T ss_pred ccccceEEEcCCCCCC-----CC--CC-cEEEEEEEcCCCEEEEEEEEccC-----------------------------
Confidence 8999999999999886 33 45 89999999999999876443100
Q ss_pred hhhccccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHHHHH
Q 003784 575 AAQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALVD 654 (795)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~~~~ 654 (795)
++ ...++|+. ...|+++++++
T Consensus 514 --------g~----------------------------------------------~~~~~i~~-----~~~ls~~~i~~ 534 (657)
T PTZ00186 514 --------GK----------------------------------------------TQNITITA-----NGGLSKEQIEQ 534 (657)
T ss_pred --------Cc----------------------------------------------EEEEEecc-----CccCCHHHHHH
Confidence 00 00344431 23599999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH
Q 003784 655 AEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQER 734 (795)
Q Consensus 655 ~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~g~~a~~~~~~~k 734 (795)
+.+.++++..+|+.++++.+++|.+|+++|.++..+.+. ..+++++++.+...++..++||.. ++.+.++++++
T Consensus 535 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~ 608 (657)
T PTZ00186 535 MIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGEW----KYVSDAEKENVKTLVAELRKAMEN--PNVAKDDLAAA 608 (657)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh----ccCCHHHHHHHHHHHHHHHHHHhc--CCcCHHHHHHH
Confidence 999999999999999999999999999999999999642 347899999999999999999973 35578999999
Q ss_pred HHHHHHhhhHHHHHHH
Q 003784 735 LDVLKAIGDPVFFRFK 750 (795)
Q Consensus 735 ~~~L~~~~~~i~~r~~ 750 (795)
+++|++++.++..++.
T Consensus 609 ~~~l~~~~~~~~~~~~ 624 (657)
T PTZ00186 609 TDKLQKAVMECGRTEY 624 (657)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988653
No 11
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=3.5e-93 Score=831.65 Aligned_cols=584 Identities=25% Similarity=0.462 Sum_probs=520.3
Q ss_pred cEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceeEEEEeC-CcEEEcHhHHHHHhhCcchhhhhhhhhcCCCCh
Q 003784 25 AVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHE-STRLLGEEASGIIARYPHRVYSQLRDMIGKPFK 103 (795)
Q Consensus 25 ~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~v~~~~-~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~~ 103 (795)
.+||||||||||+||++ .+| .++++.|.+|+|.+||+|+|.+ +++++|..|..++.++|.++++++||+||++++
T Consensus 1 ~viGIDlGtt~s~va~~--~~g--~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~ 76 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVM--EGG--EPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD 76 (595)
T ss_pred CEEEEEeCcccEEEEEE--ECC--EEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch
Confidence 37999999999999999 666 3468999999999999999975 589999999999999999999999999999886
Q ss_pred hhHhhHhhcCCCceEEECCCCcEEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHHHH
Q 003784 104 QVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQA 183 (795)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~A 183 (795)
+++.. ...+||. +...++.+.+.+. +..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++|
T Consensus 77 ~~~~~--~~~~~~~-v~~~~~~~~~~v~-~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~A 152 (595)
T TIGR02350 77 EVTEE--AKRVPYK-VVGDGGDVRVKVD-GKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDA 152 (595)
T ss_pred HHHHH--hhcCCee-EEcCCCceEEEEC-CEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 65543 3468888 5566888888886 578999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCCCC
Q 003784 184 AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAEL 263 (795)
Q Consensus 184 a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~l 263 (795)
|++|||++++||+||+|||++|+..+. ..+.++|||||||||||+|++++. .+.++++++.|+..+
T Consensus 153 a~~AGl~v~~li~EptAAAl~y~~~~~--~~~~~vlV~D~Gggt~dvsv~~~~------------~~~~~v~~~~gd~~l 218 (595)
T TIGR02350 153 GKIAGLEVLRIINEPTAAALAYGLDKS--KKDEKILVFDLGGGTFDVSILEIG------------DGVFEVLSTAGDTHL 218 (595)
T ss_pred HHHcCCceEEEecchHHHHHHHhhccc--CCCcEEEEEECCCCeEEEEEEEec------------CCeEEEEEecCCccc
Confidence 999999999999999999999988652 346899999999999999999764 678999999999999
Q ss_pred chHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccC----cceEEEeeHHHH
Q 003784 264 GGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVD----IDFRSSITRQKF 339 (795)
Q Consensus 264 GG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~l~~~----~d~~~~itr~ef 339 (795)
||.+||+.|++|+.++|..+ ++.++..+++++.+|+.+||++|+.||.+.++.++++.+..+ .++.+.|||++|
T Consensus 219 GG~d~D~~l~~~~~~~~~~~--~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~f 296 (595)
T TIGR02350 219 GGDDFDQRIIDWLADEFKKE--EGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKF 296 (595)
T ss_pred CchhHHHHHHHHHHHHHHHh--hCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHH
Confidence 99999999999999999998 778888889999999999999999999999999999877643 578899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHHHhcC
Q 003784 340 EELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSD 419 (795)
Q Consensus 340 e~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~ls~ 419 (795)
+++|+|+++++..+++++|+.+++++.+|+.|+|+||+||+|+|++.|+++||. ++..++|||+|||+|||++|+.+++
T Consensus 297 e~l~~~l~~~~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~-~~~~~~~pdeava~GAa~~aa~l~~ 375 (595)
T TIGR02350 297 EELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGK-EPNKSVNPDEVVAIGAAIQGGVLKG 375 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCC-cccCCcCcHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999995 6788999999999999999999987
Q ss_pred CccccCcceeEecceeeeEeeecCCccccCCCcceeeeeCCCCCCcceEEeeeecc----cEEEEEEeecCCCCCCCCCC
Q 003784 420 GIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHAK----DFEVSLAYESEDLLPPGATS 495 (795)
Q Consensus 420 ~~~~~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~~----~~~i~i~y~~~~~~~~~~~~ 495 (795)
. + +++.+.|++|++||+++.++.+ .+|||+|+++|++++.+|.+.. .+.+.+ |+|++.++. +|
T Consensus 376 ~--~-~~~~~~d~~~~~igi~~~~~~~-------~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i-~~ge~~~~~--~~ 442 (595)
T TIGR02350 376 D--V-KDVLLLDVTPLSLGIETLGGVM-------TKLIERNTTIPTKKSQVFSTAADNQPAVDIHV-LQGERPMAA--DN 442 (595)
T ss_pred C--c-ccceeeecccceeEEEecCCce-------EEEEeCCCcCCccceEeeeccCCCCcEEEEEE-Eeecccccc--cC
Confidence 6 4 7899999999999999877654 3899999999999999998754 468888 999988776 58
Q ss_pred CceeEEEEcCCccchhhhccCCCCCCceEEEEEEEecCCceEEeeeeeEEEEEEEeeccccccccccccCCCCCCchhhh
Q 003784 496 PVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAETA 575 (795)
Q Consensus 496 ~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (795)
..||+|.|.++++.+ .| .+ +|+|+|++|.||+|+|+..+...
T Consensus 443 ~~lg~~~i~~~~~~~-----~g--~~-~i~v~f~~d~~G~l~v~~~~~~~------------------------------ 484 (595)
T TIGR02350 443 KSLGRFELTGIPPAP-----RG--VP-QIEVTFDIDANGILHVSAKDKGT------------------------------ 484 (595)
T ss_pred cEeEEEEECCCCCCC-----CC--Cc-eEEEEEEEcCCCeEEEEEEEccC------------------------------
Confidence 899999999998875 23 34 89999999999999887443100
Q ss_pred hhccccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHHHHHH
Q 003784 576 AQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALVDA 655 (795)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~~~~~ 655 (795)
+ + ...++++. ..+||.++++++
T Consensus 485 -------~------------------------------------------~----~~~~~i~~-----~~~ls~~~~~~~ 506 (595)
T TIGR02350 485 -------G------------------------------------------K----EQSITITA-----SSGLSEEEIERM 506 (595)
T ss_pred -------C------------------------------------------c----eEEEEecc-----ccccCHHHHHHH
Confidence 0 0 00233331 246999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHH
Q 003784 656 EAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQERL 735 (795)
Q Consensus 656 ~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~g~~a~~~~~~~k~ 735 (795)
++++.+|..+|+.++++.++||.||+|||.+|++|++ +.++++++++++|.+.+++.++|||++ +..+|++++
T Consensus 507 ~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~---~~~~~~~~e~~~l~~~l~~~~~wL~~~----d~~~i~~~~ 579 (595)
T TIGR02350 507 VKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKE---AGDKLPAEEKEKIEKAVAELKEALKGE----DVEEIKAKT 579 (595)
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHH
Confidence 9999999999999999999999999999999999963 678899999999999999999999975 578999999
Q ss_pred HHHHHhhhHHHHHH
Q 003784 736 DVLKAIGDPVFFRF 749 (795)
Q Consensus 736 ~~L~~~~~~i~~r~ 749 (795)
++|+++++++..++
T Consensus 580 ~~l~~~~~~~~~~~ 593 (595)
T TIGR02350 580 EELQQALQKLAEAM 593 (595)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998754
No 12
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=5.2e-93 Score=829.53 Aligned_cols=588 Identities=25% Similarity=0.442 Sum_probs=523.6
Q ss_pred CcEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceeEEEEeC-CcEEEcHhHHHHHhhCcchhhhhhhhhcCCCC
Q 003784 24 SAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHE-STRLLGEEASGIIARYPHRVYSQLRDMIGKPF 102 (795)
Q Consensus 24 ~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~v~~~~-~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~ 102 (795)
+.+||||||||||+||++ .+| .++++.|..|+|.+||+|+|.+ +++++|..|..++..+|.++++++||+||+.+
T Consensus 2 ~~viGIDlGTt~s~va~~--~~g--~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~ 77 (621)
T CHL00094 2 GKVVGIDLGTTNSVVAVM--EGG--KPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKF 77 (621)
T ss_pred CceEEEEeCcccEEEEEE--ECC--EEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCCh
Confidence 469999999999999999 666 3579999999999999999964 68999999999999999999999999999987
Q ss_pred hhhHhhHhhcCCCceEEECCCCcEEEEeCC-CccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHH
Q 003784 103 KQVKHLIDSLYLPFNVVEDSRGAVSFKIDE-NNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLM 181 (795)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~ 181 (795)
.++... ...++|.+..++++.+.+.+.. +..++|+++++++|+++++.++.+++.++.++|||||++|++.||++++
T Consensus 78 ~~~~~~--~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~ 155 (621)
T CHL00094 78 SEISEE--AKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATK 155 (621)
T ss_pred HHHHhh--hhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHH
Confidence 765543 3468999998888888887643 4689999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCC
Q 003784 182 QAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDA 261 (795)
Q Consensus 182 ~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~ 261 (795)
+||++|||++++||+||+|||++|+... ..+.++|||||||||||+|++++. .+.++|+++.|+.
T Consensus 156 ~Aa~~AGl~v~~li~EptAAAlay~~~~---~~~~~vlV~DlGgGT~DvSv~~~~------------~~~~~vla~~gd~ 220 (621)
T CHL00094 156 DAGKIAGLEVLRIINEPTAASLAYGLDK---KNNETILVFDLGGGTFDVSILEVG------------DGVFEVLSTSGDT 220 (621)
T ss_pred HHHHHcCCceEEEeccHHHHHHHhcccc---CCCCEEEEEEcCCCeEEEEEEEEc------------CCEEEEEEEecCC
Confidence 9999999999999999999999999765 235789999999999999999764 6789999999999
Q ss_pred CCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeeccc----CcceEEEeeHH
Q 003784 262 ELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYV----DIDFRSSITRQ 337 (795)
Q Consensus 262 ~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~l~~----~~d~~~~itr~ 337 (795)
.+||++||+.|++|+.++|.++ ++.++..+++++.+|+.+||++|+.||.+.++.+.++.+.. +.++...|||+
T Consensus 221 ~lGG~d~D~~l~~~~~~~~~~~--~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~ 298 (621)
T CHL00094 221 HLGGDDFDKKIVNWLIKEFKKK--EGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRA 298 (621)
T ss_pred CcChHHHHHHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHH
Confidence 9999999999999999999998 77888889999999999999999999999999999987754 25788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHHHh
Q 003784 338 KFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANL 417 (795)
Q Consensus 338 efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~l 417 (795)
+|+++|+++++++..+|+++|+.+++.+.+|+.|+|+||+||+|.|++.|+++||. .+..++|||+|||+|||++|+.+
T Consensus 299 ~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~-~~~~~~~pdeava~GAA~~aa~l 377 (621)
T CHL00094 299 KFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGK-KPNQSVNPDEVVAIGAAVQAGVL 377 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhCC-CcCcCCCchhHHHhhhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999986 67789999999999999999999
Q ss_pred cCCccccCcceeEecceeeeEeeecCCccccCCCcceeeeeCCCCCCcceEEeeeec----ccEEEEEEeecCCCCCCCC
Q 003784 418 SDGIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHA----KDFEVSLAYESEDLLPPGA 493 (795)
Q Consensus 418 s~~~~~~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~----~~~~i~i~y~~~~~~~~~~ 493 (795)
++. + +++.+.|++|++||+++.++.+ .+|||+|+++|++++.+|.+. ..+.+.+ |+|++.++.
T Consensus 378 s~~--~-~~~~~~d~~~~~lgi~~~~~~~-------~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i-~~ge~~~~~-- 444 (621)
T CHL00094 378 AGE--V-KDILLLDVTPLSLGVETLGGVM-------TKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHV-LQGERELAK-- 444 (621)
T ss_pred cCC--c-cceeeeeeeceeeeeeccCCEE-------EEEEeCCCccceeeeEEEEeccCCCcEEEEEE-EeeccccCC--
Confidence 873 4 6889999999999999877654 389999999999999999874 4688888 999988877
Q ss_pred CCCceeEEEEcCCccchhhhccCCCCCCceEEEEEEEecCCceEEeeeeeEEEEEEEeeccccccccccccCCCCCCchh
Q 003784 494 TSPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAE 573 (795)
Q Consensus 494 ~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (795)
+|..||+|.|.++++.+ .| .+ +|+|+|++|.||+|+|+..+.- +
T Consensus 445 ~n~~lg~~~i~~~~~~~-----~g--~~-~i~v~f~id~~Gil~v~~~~~~--------------------------t-- 488 (621)
T CHL00094 445 DNKSLGTFRLDGIPPAP-----RG--VP-QIEVTFDIDANGILSVTAKDKG--------------------------T-- 488 (621)
T ss_pred CCCEEEEEEEeCCCCCC-----CC--CC-cEEEEEEECCCCeEEEEEeecc--------------------------C--
Confidence 58999999999999875 23 34 7999999999999988744210 0
Q ss_pred hhhhccccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHHHH
Q 003784 574 TAAQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALV 653 (795)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~~~ 653 (795)
+ +. ..+.+. ...+|+.++++
T Consensus 489 ---------~------------------------------------------~~----~~~~i~-----~~~~ls~~~i~ 508 (621)
T CHL00094 489 ---------G------------------------------------------KE----QSITIQ-----GASTLPKDEVE 508 (621)
T ss_pred ---------C------------------------------------------ce----eeeeec-----cchhccHHHHH
Confidence 0 00 022332 12369999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHH
Q 003784 654 DAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQE 733 (795)
Q Consensus 654 ~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~g~~a~~~~~~~ 733 (795)
++++++.+|..+|+.++++.++||.||+|||.+|++|++ |..++++++|+++.+.+++.++|||+++ .++|++
T Consensus 509 ~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~~---~~~~~~~~~~~~~~~~l~~~~~wl~~~~----~~~~~~ 581 (621)
T CHL00094 509 RMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLKE---LKDKISEEKKEKIENLIKKLRQALQNDN----YESIKS 581 (621)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHhcCC----HHHHHH
Confidence 999999999999999999999999999999999999973 7899999999999999999999999874 589999
Q ss_pred HHHHHHHhhhHHHHHHHh
Q 003784 734 RLDVLKAIGDPVFFRFKE 751 (795)
Q Consensus 734 k~~~L~~~~~~i~~r~~e 751 (795)
++++|+++++++..++..
T Consensus 582 ~~~~l~~~~~~~~~kl~~ 599 (621)
T CHL00094 582 LLEELQKALMEIGKEVYS 599 (621)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999986544
No 13
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=1.7e-90 Score=803.20 Aligned_cols=577 Identities=23% Similarity=0.362 Sum_probs=512.2
Q ss_pred EEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceeEEEEeC-CcEEEcHhHHHHHhhCcchhhhhhhhhcCCCChh
Q 003784 26 VSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHE-STRLLGEEASGIIARYPHRVYSQLRDMIGKPFKQ 104 (795)
Q Consensus 26 vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~v~~~~-~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~~~ 104 (795)
+||||||||||+||++ .+| .++++.|..|++.+||+|+|.+ +++++|..|..++.++|.++++++||+||+++.+
T Consensus 1 ~iGIDlGTtns~va~~--~~g--~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d 76 (599)
T TIGR01991 1 AVGIDLGTTNSLVASV--RSG--VPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIED 76 (599)
T ss_pred CEEEEEccccEEEEEE--ECC--EEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccc
Confidence 5899999999999999 666 4689999999999999999975 4899999999999999999999999999998766
Q ss_pred hHhhHhhcCCCceEEECCCCcEEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHHHHH
Q 003784 105 VKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAA 184 (795)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~Aa 184 (795)
++. ...+||.++...+|.+.+.+.++ .++|+++++++|++|++.++.+++.++.++|||||+||++.||+++++||
T Consensus 77 ~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa 152 (599)
T TIGR01991 77 IKT---FSILPYRFVDGPGEMVRLRTVQG-TVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAA 152 (599)
T ss_pred hhh---cccCCEEEEEcCCCceEEEeCCC-EEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 543 45789999888888899988764 69999999999999999999999999999999999999999999999999
Q ss_pred HHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCCCCc
Q 003784 185 ELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELG 264 (795)
Q Consensus 185 ~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~lG 264 (795)
++|||++++||+||+|||++|++.+. .+.++||||+||||||+|++++. .+.++|+++.|+..+|
T Consensus 153 ~~AGl~v~~li~EPtAAAlay~~~~~---~~~~vlV~DlGgGT~DvSi~~~~------------~~~~~vla~~gd~~lG 217 (599)
T TIGR01991 153 RLAGLNVLRLLNEPTAAAVAYGLDKA---SEGIYAVYDLGGGTFDVSILKLT------------KGVFEVLATGGDSALG 217 (599)
T ss_pred HHcCCCceEEecCHHHHHHHHhhccC---CCCEEEEEEcCCCeEEEEEEEEc------------CCeEEEEEEcCCCCCC
Confidence 99999999999999999999998762 45789999999999999999774 6789999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccCcceEEEeeHHHHHHHHH
Q 003784 265 GQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSITRQKFEELCE 344 (795)
Q Consensus 265 G~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~ 344 (795)
|++||+.|++|+.+++ +.+...+++.+.+|+.+||++|+.||.+..+.+.++. ++.++.++|||++|+++|+
T Consensus 218 G~d~D~~l~~~l~~~~------~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~ 289 (599)
T TIGR01991 218 GDDFDHALAKWILKQL------GISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQ 289 (599)
T ss_pred HHHHHHHHHHHHHHhh------CCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHH
Confidence 9999999999999764 3444567899999999999999999999999888874 7889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHHHhcCCcccc
Q 003784 345 DLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGIKLN 424 (795)
Q Consensus 345 ~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~ls~~~~~~ 424 (795)
|+++++..+|+++|+.+++.+.+|+.|+||||+||+|+|++.|+++||. .+..++|||+|||+|||++|+.+++.++.
T Consensus 290 ~ll~~i~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~-~~~~~~npdeaVA~GAai~a~~l~~~~~~- 367 (599)
T TIGR01991 290 PLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQ-EPLTDIDPDQVVALGAAIQADLLAGNRIG- 367 (599)
T ss_pred HHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCC-CCCCCCCCcHHHHHHHHHHHHHhcccccc-
Confidence 9999999999999999999999999999999999999999999999986 45678999999999999999999998877
Q ss_pred CcceeEecceeeeEeeecCCccccCCCcceeeeeCCCCCCcceEEeeeecc----cEEEEEEeecCCCCCCCCCCCceeE
Q 003784 425 RKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHAK----DFEVSLAYESEDLLPPGATSPVFAK 500 (795)
Q Consensus 425 ~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~~----~~~i~i~y~~~~~~~~~~~~~~i~~ 500 (795)
+++.+.|++|++||+++.++.+ .+|||+|+++|++++..|++.. .+.|.+ |+|++.++. +|..||+
T Consensus 368 ~~~~l~dv~p~slgi~~~~g~~-------~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i-~qGe~~~~~--~n~~lg~ 437 (599)
T TIGR01991 368 NDLLLLDVTPLSLGIETMGGLV-------EKIIPRNTPIPVARAQEFTTYKDGQTAMVIHV-VQGERELVE--DCRSLAR 437 (599)
T ss_pred CceEEEEeeeeeeEEEecCCEE-------EEEEeCCCcCCccceEEEEEccCCCeEEEEEE-Eeecccccc--cCceEEE
Confidence 7899999999999999987654 3899999999999999998643 478888 999988877 5899999
Q ss_pred EEEcCCccchhhhccCCCCCCceEEEEEEEecCCceEEeeeeeEEEEEEEeeccccccccccccCCCCCCchhhhhhccc
Q 003784 501 YAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAETAAQNMT 580 (795)
Q Consensus 501 ~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (795)
|.|.|+++.+ .| .+ +|+|+|++|.||+|.|+..+.. +
T Consensus 438 ~~l~~i~~~~-----~g--~~-~i~v~f~id~~gil~V~a~~~~--------------------------t--------- 474 (599)
T TIGR01991 438 FELRGIPPMV-----AG--AA-RIRVTFQVDADGLLTVSAQEQS--------------------------T--------- 474 (599)
T ss_pred EEEcCCCCCC-----CC--CC-cEEEEEEECCCCeEEEEEEECC--------------------------C---------
Confidence 9999999875 23 45 8999999999999987643210 0
Q ss_pred cccccccccCCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHHHHHHHHHHH
Q 003784 581 VEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALVDAEAKLE 660 (795)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~~~~~~~~~~ 660 (795)
+ +++ .+.+.. ...|++++++++.+++.
T Consensus 475 --~------------------------------------------~~~----~~~i~~-----~~~l~~~~i~~~~~~~~ 501 (599)
T TIGR01991 475 --G------------------------------------------VEQ----SIQVKP-----SYGLSDEEIERMLKDSF 501 (599)
T ss_pred --C------------------------------------------cEE----EEeccc-----ccCCCHHHHHHHHHHHH
Confidence 0 000 123321 23599999999999999
Q ss_pred HhHHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH
Q 003784 661 ELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQERLDVLKA 740 (795)
Q Consensus 661 ~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~g~~a~~~~~~~k~~~L~~ 740 (795)
++..+|+.++++.+++|.+|+|+|.++..+.+ +..++++++|+.+...+++.++||+++ +.++++++.++|++
T Consensus 502 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~l~~~----~~~~~~~~~~~l~~ 574 (599)
T TIGR01991 502 KHAEEDMYARALAEQKVEAERILEALQAALAA---DGDLLSEDERAAIDAAMEALQKALQGD----DADAIKAAIEALEE 574 (599)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHH
Confidence 99999999999999999999999999999964 456789999999999999999999865 47899999999999
Q ss_pred hhhHHHHH
Q 003784 741 IGDPVFFR 748 (795)
Q Consensus 741 ~~~~i~~r 748 (795)
+++++..+
T Consensus 575 ~~~~~~~~ 582 (599)
T TIGR01991 575 ATDNFAAR 582 (599)
T ss_pred HHHHHHHH
Confidence 99888763
No 14
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-92 Score=780.24 Aligned_cols=604 Identities=29% Similarity=0.526 Sum_probs=549.1
Q ss_pred cCCCCcEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceeEEEEeCCcEEEcHhHHHHHhhCcchhhhhhhhhcC
Q 003784 20 SHSQSAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHESTRLLGEEASGIIARYPHRVYSQLRDMIG 99 (795)
Q Consensus 20 ~~~~~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG 99 (795)
++..+.++|||||||+++|+++ .. ..++++.|++|+|.+||+|+|.++++++|..|..+...+|.++++++||++|
T Consensus 3 ~~~~~~aiGIdlGtT~s~v~v~--~~--~~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliG 78 (620)
T KOG0101|consen 3 ATPESVAIGIDLGTTYSCVGVY--QS--GKVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIG 78 (620)
T ss_pred CccccceeeEeccCccceeeeE--cC--CcceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcC
Confidence 3456789999999999999999 54 4689999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHhhHhhcCCCceEEECCCCcEEEEeCC--C-ccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHH
Q 003784 100 KPFKQVKHLIDSLYLPFNVVEDSRGAVSFKIDE--N-NNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAE 176 (795)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~q 176 (795)
+.+++.......++|||.+..+.++.+.+.+.. . +.++|+++.+++|.+++..++.+++..+.++|+|||+||+..|
T Consensus 79 r~f~d~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Q 158 (620)
T KOG0101|consen 79 RFFDDPEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQ 158 (620)
T ss_pred ccccchhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHH
Confidence 977776666677899999996656666666543 2 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEE
Q 003784 177 RKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKD 256 (795)
Q Consensus 177 R~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~ 256 (795)
|+++.+|+.+|||+++++|+||+|||++|++.+. .....+|||+|+||||||++++.+ ..|.+.+++
T Consensus 159 r~at~~A~~iaGl~vlrii~EPtAaalAygl~k~-~~~~~~VlI~DlGggtfdvs~l~i------------~gG~~~vka 225 (620)
T KOG0101|consen 159 RAATKDAALIAGLNVLRIINEPTAAALAYGLDKK-VLGERNVLIFDLGGGTFDVSVLSL------------EGGIFEVKA 225 (620)
T ss_pred HHHHHHHHHhcCCceeeeecchHHHHHHhhcccc-ccceeeEEEEEcCCCceeeeeEEe------------ccchhhhhh
Confidence 9999999999999999999999999999998775 345688999999999999999955 367889999
Q ss_pred eccCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccCcceEEEeeH
Q 003784 257 VRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSITR 336 (795)
Q Consensus 257 ~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~l~~~~d~~~~itr 336 (795)
+.++.++||.+||+.|++|+..+|+++ ++.++..++++++||+.+||++|+.||....+.+.|++|+++.||...|||
T Consensus 226 t~gd~~lGGedf~~~l~~h~~~ef~~k--~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itr 303 (620)
T KOG0101|consen 226 TAGDTHLGGEDFDNKLVNHFAAEFKRK--AGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITR 303 (620)
T ss_pred hcccccccchhhhHHHHHHHHHHHHHh--hccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeeh
Confidence 999999999999999999999999999 889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHHH
Q 003784 337 QKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAAN 416 (795)
Q Consensus 337 ~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~ 416 (795)
.+|+.+|.+++.++..++..+|+++++...+|+.|+||||++|+|.+|..++++|+.+.+..++||||+||+|||++||.
T Consensus 304 arfe~l~~dlf~~~~~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~ 383 (620)
T KOG0101|consen 304 ARFEELNADLFRSTLEPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAI 383 (620)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred hcCC--ccccCcceeEecceeeeEeeecCCccccCCCcceeeeeCCCCCCcceEEeeeecc----cEEEEEEeecCCCCC
Q 003784 417 LSDG--IKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHAK----DFEVSLAYESEDLLP 490 (795)
Q Consensus 417 ls~~--~~~~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~~----~~~i~i~y~~~~~~~ 490 (795)
+++. ..+ .++.+.|+.|.++||+..++.+. ++|++++.+|++++.+|++.. .+.|.+ |+|++.+.
T Consensus 384 ~~g~~~~~~-~~l~lid~~pl~~gve~a~~~~~-------~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~V-yEger~~~ 454 (620)
T KOG0101|consen 384 LSGDKSLNI-QDLLLIDVAPLSLGVETAGGVFT-------VLIPRNTSIPTKKTQTFTTYSDNQPGVLIQV-YEGERAMT 454 (620)
T ss_pred ccCCccccc-cceeeeecccccccccccCCcce-------eeeecccccceeeeeeeeeecCCCCceeEEE-Eecccccc
Confidence 9974 344 78999999999999999988764 999999999999999998864 478889 99999888
Q ss_pred CCCCCCceeEEEEcCCccchhhhccCCCCCCceEEEEEEEecCCceEEeeeeeEEEEEEEeeccccccccccccCCCCCC
Q 003784 491 PGATSPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNI 570 (795)
Q Consensus 491 ~~~~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (795)
. +|..+|.|.+.||++++ +| +| .|.++|.+|.||+|.|+..+...
T Consensus 455 k--dn~~lg~feL~gippap-----rg--vp-~IevtfdiD~ngiL~Vta~d~st------------------------- 499 (620)
T KOG0101|consen 455 K--DNNLLGKFELTGIPPAP-----RG--VP-QIEVTFDIDANGILNVTAVDKST------------------------- 499 (620)
T ss_pred c--cccccceeeecCCCccc-----cC--Cc-ceeEEEecCCCcEEEEeeccccC-------------------------
Confidence 7 68999999999999997 44 77 99999999999999876554210
Q ss_pred chhhhhhccccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHH
Q 003784 571 SAETAAQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKE 650 (795)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~ 650 (795)
.++ -.|.+++ ..+.||.+
T Consensus 500 ------------gK~----------------------------------------------~~i~i~n----~~grls~~ 517 (620)
T KOG0101|consen 500 ------------GKE----------------------------------------------NKITITN----DKGRLSKE 517 (620)
T ss_pred ------------Ccc----------------------------------------------ceEEEec----ccceeehh
Confidence 000 0345543 24579999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 003784 651 ALVDAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKE 730 (795)
Q Consensus 651 ~~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~g~~a~~~~ 730 (795)
+|++|....+.+..+|...+++.+++|.||+|+|+++..+++.. +.++++++.++.+++.++..||+.+ +.+.+++
T Consensus 518 ~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~~~---~~i~~~~~~~~~~~~~~~i~wl~~~-~~~~~~e 593 (620)
T KOG0101|consen 518 EIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVEDEK---GKINEEDKQKILDKCNEVINWLDKN-QLAEKEE 593 (620)
T ss_pred hhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhhhhc---cccChhhhhhHHHHHHHHHHHhhhc-ccccccH
Confidence 99999999999999999999999999999999999999998752 7899999999999999999999988 4677999
Q ss_pred HHHHHHHHHHhhhHHHHHHHhh
Q 003784 731 FQERLDVLKAIGDPVFFRFKEL 752 (795)
Q Consensus 731 ~~~k~~~L~~~~~~i~~r~~e~ 752 (795)
|++|.++|+..|.||..+++..
T Consensus 594 ~e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 594 FEHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred HHHHHHHHHhhccHHHHhhhcc
Confidence 9999999999999999997765
No 15
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=4.2e-89 Score=792.93 Aligned_cols=577 Identities=23% Similarity=0.352 Sum_probs=508.4
Q ss_pred CcEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceeEEEEeCCcEEEcHhHHHHHhhCcchhhhhhhhhcCCCCh
Q 003784 24 SAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHESTRLLGEEASGIIARYPHRVYSQLRDMIGKPFK 103 (795)
Q Consensus 24 ~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~~ 103 (795)
..+||||||||||+||++ .+| .++++.|..|++.+||+|+|.+++++||..|..++..+|.++++++||+||+.+.
T Consensus 19 ~~~iGIDlGTt~s~va~~--~~g--~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~ 94 (616)
T PRK05183 19 RLAVGIDLGTTNSLVATV--RSG--QAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLA 94 (616)
T ss_pred CeEEEEEeccccEEEEEE--ECC--EEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCch
Confidence 469999999999999999 666 4589999999999999999988889999999999999999999999999999876
Q ss_pred hhHhhHhhcCCCceEEECCCCcEEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHHHH
Q 003784 104 QVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQA 183 (795)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~A 183 (795)
+++. ....+||.+....+|.+.+.+.++ .++|+++++++|++|++.++.+++.++.++|||||+||++.||+++++|
T Consensus 95 d~~~--~~~~~~~~~~~~~~g~~~~~~~~~-~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 171 (616)
T PRK05183 95 DIQQ--RYPHLPYQFVASENGMPLIRTAQG-LKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDA 171 (616)
T ss_pred hhhh--hhhcCCeEEEecCCCceEEEecCC-eEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 6543 234689998887788888888654 7899999999999999999999999999999999999999999999999
Q ss_pred HHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCCCC
Q 003784 184 AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAEL 263 (795)
Q Consensus 184 a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~l 263 (795)
|++|||++++||+||+|||++|++.+ ..++++||||+||||||+|++++. .+.++|+++.|+..+
T Consensus 172 a~~AGl~v~~li~EPtAAAlay~~~~---~~~~~vlV~DlGGGT~DvSv~~~~------------~~~~evlat~gd~~l 236 (616)
T PRK05183 172 ARLAGLNVLRLLNEPTAAAIAYGLDS---GQEGVIAVYDLGGGTFDISILRLS------------KGVFEVLATGGDSAL 236 (616)
T ss_pred HHHcCCCeEEEecchHHHHHHhhccc---CCCCEEEEEECCCCeEEEEEEEee------------CCEEEEEEecCCCCc
Confidence 99999999999999999999999865 235789999999999999999764 678999999999999
Q ss_pred chHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccCcceEEEeeHHHHHHHH
Q 003784 264 GGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSITRQKFEELC 343 (795)
Q Consensus 264 GG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~l~~~~d~~~~itr~efe~l~ 343 (795)
||.+||..|++|+.++|... ...+++++.+|+.+||++|+.||.+..+.+.++.+ ...|||++|+++|
T Consensus 237 GG~d~D~~l~~~~~~~~~~~------~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~------~~~itr~efe~l~ 304 (616)
T PRK05183 237 GGDDFDHLLADWILEQAGLS------PRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW------QGEITREQFNALI 304 (616)
T ss_pred CHHHHHHHHHHHHHHHcCCC------cCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC------CCeEcHHHHHHHH
Confidence 99999999999999887433 34678999999999999999999999988888532 2259999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHHHhcCCccc
Q 003784 344 EDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGIKL 423 (795)
Q Consensus 344 ~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~ls~~~~~ 423 (795)
+|+++++..+++++|+++++.+.+|+.|+||||+||+|+|++.|+++||.. +..++|||+|||+|||++|+.+++.+..
T Consensus 305 ~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~-~~~~~npdeaVA~GAAi~a~~l~~~~~~ 383 (616)
T PRK05183 305 APLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRT-PLTSIDPDKVVAIGAAIQADILAGNKPD 383 (616)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccC-cCcCCCchHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999999999999999999999999874 5578999999999999999999988777
Q ss_pred cCcceeEecceeeeEeeecCCccccCCCcceeeeeCCCCCCcceEEeeeecc----cEEEEEEeecCCCCCCCCCCCcee
Q 003784 424 NRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHAK----DFEVSLAYESEDLLPPGATSPVFA 499 (795)
Q Consensus 424 ~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~~----~~~i~i~y~~~~~~~~~~~~~~i~ 499 (795)
+++.+.|++|++||+++.++.+ .+|||+|+++|++++..|++.. .+.+.+ |+|++.++. +|..||
T Consensus 384 -~~~~l~dv~p~slgi~~~~g~~-------~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v-~qGe~~~~~--~n~~lg 452 (616)
T PRK05183 384 -SDMLLLDVIPLSLGLETMGGLV-------EKIIPRNTTIPVARAQEFTTFKDGQTAMAIHV-VQGERELVA--DCRSLA 452 (616)
T ss_pred -CceEEEeeccccccceecCCeE-------EEEEeCCCcccccccEEEEeccCCCeEEEEEE-ecccccccc--cccEEE
Confidence 7899999999999999877654 3899999999999999998643 588888 999998887 588999
Q ss_pred EEEEcCCccchhhhccCCCCCCceEEEEEEEecCCceEEeeeeeEEEEEEEeeccccccccccccCCCCCCchhhhhhcc
Q 003784 500 KYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAETAAQNM 579 (795)
Q Consensus 500 ~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (795)
+|.|.|+|+.+ .| .+ +|+|+|++|.||+|.|+..+...
T Consensus 453 ~~~i~~i~~~~-----~g--~~-~i~v~f~~d~~Gil~V~a~~~~~---------------------------------- 490 (616)
T PRK05183 453 RFELRGIPPMA-----AG--AA-RIRVTFQVDADGLLSVTAMEKST---------------------------------- 490 (616)
T ss_pred EEEeCCCCCCC-----CC--Cc-cEEEEEEECCCCeEEEEEEEcCC----------------------------------
Confidence 99999999875 23 44 89999999999999887332100
Q ss_pred ccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHHHHHHHHHH
Q 003784 580 TVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALVDAEAKL 659 (795)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~~~~~~~~~ 659 (795)
+ + ..++.+.. ...||+++++++.+++
T Consensus 491 ---~------------------------------------------~----~~~~~i~~-----~~~ls~~~i~~~~~~~ 516 (616)
T PRK05183 491 ---G------------------------------------------V----EASIQVKP-----SYGLTDDEIARMLKDS 516 (616)
T ss_pred ---C------------------------------------------c----EEEecccc-----cccCCHHHHHHHHHHH
Confidence 0 0 01233321 2359999999999999
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH
Q 003784 660 EELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQERLDVLK 739 (795)
Q Consensus 660 ~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~g~~a~~~~~~~k~~~L~ 739 (795)
.++..+|+..+++.+++|++|+|+|.+++.+.+ ....+++++|+.+...+++.++||..+ +.++|++++++|+
T Consensus 517 ~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~l~~~----d~~~~~~~~~~l~ 589 (616)
T PRK05183 517 MSHAEEDMQARALAEQKVEAERVLEALQAALAA---DGDLLSAAERAAIDAAMAALREVAQGD----DADAIEAAIKALD 589 (616)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHH
Confidence 999999999999999999999999999999964 236689999999999999999999754 6789999999999
Q ss_pred HhhhHHHHHH
Q 003784 740 AIGDPVFFRF 749 (795)
Q Consensus 740 ~~~~~i~~r~ 749 (795)
+++.++..+.
T Consensus 590 ~~~~~~~~~~ 599 (616)
T PRK05183 590 KATQEFAARR 599 (616)
T ss_pred HHHHHHHHHH
Confidence 9999998743
No 16
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=5e-89 Score=804.52 Aligned_cols=591 Identities=36% Similarity=0.629 Sum_probs=513.9
Q ss_pred EEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceeEEEEeCCcEEEcHhHHHHHhhCcchhhhhhhhhcCCCChhh
Q 003784 26 VSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHESTRLLGEEASGIIARYPHRVYSQLRDMIGKPFKQV 105 (795)
Q Consensus 26 vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~~~~ 105 (795)
||||||||+||+||++ .+| .++++.|..|+|++||+|+|.+++++||..|...+.++|.++++++|+|||+.+.+.
T Consensus 1 viGID~Gt~~~~va~~--~~~--~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~ 76 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVF--KNG--KPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDP 76 (602)
T ss_dssp EEEEEE-SSEEEEEEE--ETT--EEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSH
T ss_pred CEEEEeccCCEEEEEE--Eec--cccccccccccccccceeeEeeecccCCcchhhhccccccccccccccccccccccc
Confidence 7999999999999999 655 579999999999999999999999999999999999999999999999999965443
Q ss_pred HhhHhhcCCCceEEECCCCcEEEEeC-CC--ccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHHH
Q 003784 106 KHLIDSLYLPFNVVEDSRGAVSFKID-EN--NNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQ 182 (795)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~ 182 (795)
........++|.+..+++|.+.+.+. .| ..++|+++++++|+++++.++.+++.++.++|||||++|++.||+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~ 156 (602)
T PF00012_consen 77 DVQKEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRD 156 (602)
T ss_dssp HHHHHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHH
T ss_pred ccchhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhcccc
Confidence 33335567899999887888888765 23 4899999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCCC
Q 003784 183 AAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAE 262 (795)
Q Consensus 183 Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~ 262 (795)
||+.|||++++||+||+|||++|++.+.. .++++|||||||||+|+|++++. .+.++++++.++..
T Consensus 157 Aa~~agl~~~~li~Ep~Aaa~~y~~~~~~--~~~~vlv~D~Gggt~dvs~~~~~------------~~~~~v~~~~~~~~ 222 (602)
T PF00012_consen 157 AAELAGLNVLRLINEPTAAALAYGLERSD--KGKTVLVVDFGGGTFDVSVVEFS------------NGQFEVLATAGDNN 222 (602)
T ss_dssp HHHHTT-EEEEEEEHHHHHHHHTTTTSSS--SEEEEEEEEEESSEEEEEEEEEE------------TTEEEEEEEEEETT
T ss_pred cccccccccceeecccccccccccccccc--cccceeccccccceEeeeehhcc------------cccccccccccccc
Confidence 99999999999999999999999887643 56899999999999999999775 67899999999999
Q ss_pred CchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccC--CCceeEEEeeccc-CcceEEEeeHHHH
Q 003784 263 LGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSA--NTMAPISVESLYV-DIDFRSSITRQKF 339 (795)
Q Consensus 263 lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~--~~~~~i~i~~l~~-~~d~~~~itr~ef 339 (795)
+||++||.+|++|+.++|+.+ ++.++..+++.+.+|+.+||++|+.||. +.+..+.++++.+ |.++.+.|||++|
T Consensus 223 lGG~~~D~~l~~~~~~~~~~~--~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~f 300 (602)
T PF00012_consen 223 LGGRDFDEALAEYLLEKFKKK--YKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEF 300 (602)
T ss_dssp CSHHHHHHHHHHHHHHHHHHH--HSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHH
T ss_pred cccceecceeecccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccee
Confidence 999999999999999999998 7778888999999999999999999999 6778888888888 8999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHHHhcC
Q 003784 340 EELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSD 419 (795)
Q Consensus 340 e~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~ls~ 419 (795)
+++|+|+++++..+|+++|+.++++..+|+.|+|+||+||+|+||+.|++.|+ ..+..++||++|||+|||++|+.+++
T Consensus 301 e~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~~~~ 379 (602)
T PF00012_consen 301 EELCEPLLERIIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFG-KKISKSVNPDEAVARGAALYAAILSG 379 (602)
T ss_dssp HHHTHHHHHHTHHHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB-SS-TTTHHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccccccccccccccceeEEecCcccchhhhhhhhhccc-cccccccccccccccccccchhhhcc
Confidence 99999999999999999999999999999999999999999999999999999 57888999999999999999999999
Q ss_pred CccccCcceeEecceeeeEeeecCCccccCCCcceeeeeCCCCCCcceEEeeeec----ccEEEEEEeecCCCCCCCCCC
Q 003784 420 GIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHA----KDFEVSLAYESEDLLPPGATS 495 (795)
Q Consensus 420 ~~~~~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~----~~~~i~i~y~~~~~~~~~~~~ 495 (795)
.++. +++.+.|++|++|||++.++.+ .+++|+|+++|+..+..|.+. .+|.+.| |+|++.... .+
T Consensus 380 ~~~~-~~~~~~d~~~~~~~i~~~~~~~-------~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i-~~g~~~~~~--~~ 448 (602)
T PF00012_consen 380 SFRV-KDIKIIDVTPFSIGIEVSNGKF-------SKIIPKNTPIPSKKSKSFKTVTDNQTSISIDI-YEGESSSFE--DN 448 (602)
T ss_dssp SCSS-TSSCESEBESSEEEEEETTTEE-------EEEESTTEBSSEEEEEEEEESSTTCSEEEEEE-EESSSSBGG--GS
T ss_pred cccc-cccccccccccccccccccccc-------ccccccccccccccccccchhcccccccccee-eeccccccc--cc
Confidence 9998 8999999999999999887754 389999999999998888764 3699999 888876554 57
Q ss_pred CceeEEEEcCCccchhhhccCCCCCCceEEEEEEEecCCceEEeeeeeEEEEEEEeeccccccccccccCCCCCCchhhh
Q 003784 496 PVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAETA 575 (795)
Q Consensus 496 ~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (795)
..||+|.|.++++.+. | .+ +|+|+|++|.+|+|.|..++...+.
T Consensus 449 ~~ig~~~i~~i~~~~~-----g--~~-~i~v~f~ld~~Gil~V~~~~~~~~~---------------------------- 492 (602)
T PF00012_consen 449 KKIGSYTISGIPPAPK-----G--KP-KIKVTFELDENGILSVEAAEVETGK---------------------------- 492 (602)
T ss_dssp EEEEEEEEES-SSSST-----T--SS-EEEEEEEEETTSEEEEEEEETTTTE----------------------------
T ss_pred cccccccccccccccc-----c--cc-ceeeEEeeeeeeehhhhhccccccc----------------------------
Confidence 9999999999987652 2 35 8999999999999998866531000
Q ss_pred hhccccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHHHHHH
Q 003784 576 AQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALVDA 655 (795)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~~~~~ 655 (795)
...+.+.. ...+++++++++
T Consensus 493 -------------------------------------------------------~~~~~v~~-----~~~~~~~~~~~~ 512 (602)
T PF00012_consen 493 -------------------------------------------------------EEEVTVKK-----KETLSKEEIEEL 512 (602)
T ss_dssp -------------------------------------------------------EEEEEEES-----SSSSCHHHHHHH
T ss_pred -------------------------------------------------------cccccccc-----cccccccccccc
Confidence 00123321 224899999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHH
Q 003784 656 EAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQERL 735 (795)
Q Consensus 656 ~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~g~~a~~~~~~~k~ 735 (795)
+++++++...|+.++++.+++|+||+++|++|+.|+++ .++++++++ .++++++.+||++++++++.++|++|+
T Consensus 513 ~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~---~~~~~~~~~---~~~l~~~~~wl~~~~~~~~~~e~~~kl 586 (602)
T PF00012_consen 513 KKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEED---KDFVSEEEK---KKKLKETSDWLEDNGEDADKEEYKEKL 586 (602)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---GGGSTHHHH---HHHHHHHHHHHHHHTTTSHHHHHHHHH
T ss_pred ccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhh---hccCCHHHH---HHHHHHHHHHHHhhccCCCHHHHHHHH
Confidence 99999999999999999999999999999999999875 466666665 899999999999999899999999999
Q ss_pred HHHHHhhhHHHHHHH
Q 003784 736 DVLKAIGDPVFFRFK 750 (795)
Q Consensus 736 ~~L~~~~~~i~~r~~ 750 (795)
++|+++.+||..|++
T Consensus 587 ~~L~~~~~~i~~r~~ 601 (602)
T PF00012_consen 587 EELKKVIEPIKKRYM 601 (602)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999975
No 17
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=2.9e-84 Score=745.33 Aligned_cols=556 Identities=21% Similarity=0.315 Sum_probs=464.5
Q ss_pred CcEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceeEEEEeCCcEEEcHhHHHHHhhCcchhhhhhhhhcCCCCh
Q 003784 24 SAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHESTRLLGEEASGIIARYPHRVYSQLRDMIGKPFK 103 (795)
Q Consensus 24 ~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~~ 103 (795)
..+||||||||||+||++ .+| +++++.|.+|+|.+||+|+|.++++++|..| +++++||+||+++.
T Consensus 19 ~~viGIDlGTT~S~va~~--~~~--~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~ 84 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIA--TNR--KVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLK 84 (595)
T ss_pred ceEEEEEcCcccEEEEEE--eCC--eeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCch
Confidence 359999999999999999 544 6789999999999999999998889999987 78999999999764
Q ss_pred hhHhhHhhcCCCceEEECCCCcEEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHHHH
Q 003784 104 QVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQA 183 (795)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~A 183 (795)
+..................++.+.+.+. ++.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++|
T Consensus 85 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~-~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~~A 163 (595)
T PRK01433 85 EILNTPALFSLVKDYLDVNSSELKLNFA-NKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLA 163 (595)
T ss_pred hhccchhhHhhhhheeecCCCeeEEEEC-CEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 3211000000001112222344556654 478999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCCCC
Q 003784 184 AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAEL 263 (795)
Q Consensus 184 a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~l 263 (795)
|++|||++++||+||+|||++|+... ....++||||+||||||+|++++. ++.++|++++|+..+
T Consensus 164 a~~AGl~v~~li~EPtAAAlay~~~~---~~~~~vlV~DlGGGT~DvSi~~~~------------~~~~~V~at~gd~~l 228 (595)
T PRK01433 164 AKIAGFEVLRLIAEPTAAAYAYGLNK---NQKGCYLVYDLGGGTFDVSILNIQ------------EGIFQVIATNGDNML 228 (595)
T ss_pred HHHcCCCEEEEecCcHHHHHHHhccc---CCCCEEEEEECCCCcEEEEEEEEe------------CCeEEEEEEcCCccc
Confidence 99999999999999999999999865 234689999999999999999764 678999999999999
Q ss_pred chHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccCcceEEEeeHHHHHHHH
Q 003784 264 GGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSITRQKFEELC 343 (795)
Q Consensus 264 GG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~l~~~~d~~~~itr~efe~l~ 343 (795)
||++||.+|++|++++|... ...+ .++.||++|+.||.+..... ..++|||++|+++|
T Consensus 229 GG~d~D~~l~~~~~~~~~~~--------~~~~----~~~~~ekaK~~LS~~~~~~~----------~~~~itr~efe~l~ 286 (595)
T PRK01433 229 GGNDIDVVITQYLCNKFDLP--------NSID----TLQLAKKAKETLTYKDSFNN----------DNISINKQTLEQLI 286 (595)
T ss_pred ChHHHHHHHHHHHHHhcCCC--------CCHH----HHHHHHHHHHhcCCCccccc----------ceEEEcHHHHHHHH
Confidence 99999999999999887432 2222 23459999999998875321 16799999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHHHhcCCccc
Q 003784 344 EDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGIKL 423 (795)
Q Consensus 344 ~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~ls~~~~~ 423 (795)
+|+++++..+++++|+.++ ..+|+.|+||||+||+|+|++.|+++||. ++..++|||+|||+|||++|+.+++.+
T Consensus 287 ~~l~~~~~~~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~-~~~~~~npdeaVA~GAAi~a~~l~~~~-- 361 (595)
T PRK01433 287 LPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKV-DILSDIDPDKAVVWGAALQAENLIAPH-- 361 (595)
T ss_pred HHHHHHHHHHHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhCC-CceecCCchHHHHHHHHHHHHHhhCCc--
Confidence 9999999999999999998 56899999999999999999999999986 566789999999999999999998754
Q ss_pred cCcceeEecceeeeEeeecCCccccCCCcceeeeeCCCCCCcceEEeeeec----ccEEEEEEeecCCCCCCCCCCCcee
Q 003784 424 NRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHA----KDFEVSLAYESEDLLPPGATSPVFA 499 (795)
Q Consensus 424 ~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~----~~~~i~i~y~~~~~~~~~~~~~~i~ 499 (795)
.++.+.|++|++||+++.++.+ .+|||+|+++|++++..|++. ..+.|.+ |+|++.++. +|..||
T Consensus 362 -~~~~l~Dv~p~slgi~~~~g~~-------~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v-~qGe~~~~~--~n~~lg 430 (595)
T PRK01433 362 -TNSLLIDVVPLSLGMELYGGIV-------EKIIMRNTPIPISVVKEFTTYADNQTGIQFHI-LQGEREMAA--DCRSLA 430 (595)
T ss_pred -cceEEEEecccceEEEecCCEE-------EEEEECCCcccceeeEEeEeecCCCeEEEEEE-EeccccccC--CCcEEE
Confidence 5688999999999999987755 389999999999999999864 3588888 999998877 689999
Q ss_pred EEEEcCCccchhhhccCCCCCCceEEEEEEEecCCceEEeeeeeEEEEEEEeeccccccccccccCCCCCCchhhhhhcc
Q 003784 500 KYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAETAAQNM 579 (795)
Q Consensus 500 ~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (795)
+|.+.|+|+++ +| .+ +|+|+|++|.||+|+|+..+...
T Consensus 431 ~~~l~~i~~~~-----~g--~~-~i~vtf~id~~Gil~V~a~~~~t---------------------------------- 468 (595)
T PRK01433 431 RFELKGLPPMK-----AG--SI-RAEVTFAIDADGILSVSAYEKIS---------------------------------- 468 (595)
T ss_pred EEEEcCCCCCC-----CC--Cc-cEEEEEEECCCCcEEEEEEEcCC----------------------------------
Confidence 99999999876 33 45 89999999999999887554210
Q ss_pred ccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHHHHHHHHHH
Q 003784 580 TVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALVDAEAKL 659 (795)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~~~~~~~~~ 659 (795)
+ + ...+.+.. ...||+++++++.+++
T Consensus 469 ---~------------------------------------------~----~~~~~i~~-----~~~ls~~ei~~~~~~~ 494 (595)
T PRK01433 469 ---N------------------------------------------T----SHAIEVKP-----NHGIDKTEIDIMLENA 494 (595)
T ss_pred ---C------------------------------------------c----EEEEEecC-----CCCCCHHHHHHHHHHH
Confidence 0 0 00234431 2249999999999999
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH
Q 003784 660 EELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQERLDVLK 739 (795)
Q Consensus 660 ~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~g~~a~~~~~~~k~~~L~ 739 (795)
+++..+|..++++.+++|++|+++|.++..+++ +...+++++|+.+...+++.++||..+ +...+.+++++|+
T Consensus 495 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~i~~~~~~~~~~l~~~----~~~~~~~~~~~~~ 567 (595)
T PRK01433 495 YKNAKIDYTTRLLQEAVIEAEALIFNIERAIAE---LTTLLSESEISIINSLLDNIKEAVHAR----DIILINNSIKEFK 567 (595)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHH
Confidence 999999999999999999999999999999964 556679999999999999999999743 5667788888887
Q ss_pred HhhhH-HHHHHH
Q 003784 740 AIGDP-VFFRFK 750 (795)
Q Consensus 740 ~~~~~-i~~r~~ 750 (795)
..+++ +..|++
T Consensus 568 ~~~~~~~~~~~~ 579 (595)
T PRK01433 568 SKIKKSMDTKLN 579 (595)
T ss_pred HHHHHHHHHHhh
Confidence 77777 555543
No 18
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-85 Score=689.83 Aligned_cols=594 Identities=26% Similarity=0.451 Sum_probs=531.6
Q ss_pred CCCCcEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceeEEEE-eCCcEEEcHhHHHHHhhCcchhhhhhhhhcC
Q 003784 21 HSQSAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAF-HESTRLLGEEASGIIARYPHRVYSQLRDMIG 99 (795)
Q Consensus 21 ~~~~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~v~~-~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG 99 (795)
.....|+|||+||||||+|++ . |+.| .++.|.+|.|.+||+|+| .++++++|..|+.++..||.|+++.-||+||
T Consensus 24 ~~~~~vigidlgttnS~va~m--e-g~~~-kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrlig 99 (640)
T KOG0102|consen 24 KVKGKVIGIDLGTTNSCVAVM--E-GKKP-KIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIG 99 (640)
T ss_pred CCCCceeeEeeeccceeEEEE--e-CCCc-eEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhh
Confidence 456789999999999999999 4 4344 599999999999999999 5679999999999999999999999999999
Q ss_pred CCChhhHhhHhhcCCCceEEECCCCcEEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHH
Q 003784 100 KPFKQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKG 179 (795)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~a 179 (795)
|.+.+..........||+++..+||...++. .|+.++|.++.+++|.++++.|+.+++.++...|+||||||++.||++
T Consensus 100 Rrf~d~evq~~~k~vpyKiVk~~ngdaw~e~-~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqa 178 (640)
T KOG0102|consen 100 RRFDDPEVQKDIKQVPYKIVKASNGDAWVEA-RGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQA 178 (640)
T ss_pred hhccCHHHHHHHHhCCcceEEccCCcEEEEe-CCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHH
Confidence 9877666666777899999998899999999 678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEecc
Q 003784 180 LMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRW 259 (795)
Q Consensus 180 l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~ 259 (795)
+++|.++||++++++||||+|||++|++++.. +..++|||+||||||++++.+ .++.|+|.++.|
T Consensus 179 Tkdag~iagl~vlrvineptaaalaygld~k~---~g~iaV~dLgggtfdisilei------------~~gvfevksTng 243 (640)
T KOG0102|consen 179 TKDAGQIAGLNVLRVINEPTAAALAYGLDKKE---DGVIAVFDLGGGTFDISILEI------------EDGVFEVKSTNG 243 (640)
T ss_pred hHhhhhhccceeeccCCccchhHHhhcccccC---CCceEEEEcCCceeeeeeehh------------ccceeEEEeccC
Confidence 99999999999999999999999999998732 578999999999999999954 589999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccC----cceEEEee
Q 003784 260 DAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVD----IDFRSSIT 335 (795)
Q Consensus 260 ~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~l~~~----~d~~~~it 335 (795)
|.++||.+||..+++|+..+|+.. .+.|+..++++++||+.++|++|..||...+..++++.+..+ ..+++++|
T Consensus 244 dtflggedfd~~~~~~~v~~fk~~--~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~t 321 (640)
T KOG0102|consen 244 DTHLGGEDFDNALVRFIVSEFKKE--EGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELT 321 (640)
T ss_pred ccccChhHHHHHHHHHHHHhhhcc--cCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeec
Confidence 999999999999999999999988 889999999999999999999999999999999999987765 67889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHH
Q 003784 336 RQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAA 415 (795)
Q Consensus 336 r~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa 415 (795)
|.+||+++.++++|.+.+++.+|++|++..+||+.|+|+||.+|+|.|++.++++||. ..+..+||||+||.|||+++.
T Consensus 322 r~efe~~v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk-~p~~~vnPdeava~GAaiqgg 400 (640)
T KOG0102|consen 322 RGEFEELVPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGK-GPSKGVNPDEAVAGGAAIQGG 400 (640)
T ss_pred HHHHHHhhHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCC-CCCCCcCCcchhccchhhccc
Confidence 9999999999999999999999999999999999999999999999999999999997 568899999999999999999
Q ss_pred HhcCCccccCcceeEecceeeeEeeecCCccccCCCcceeeeeCCCCCCcceEEeeeec----ccEEEEEEeecCCCCCC
Q 003784 416 NLSDGIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHA----KDFEVSLAYESEDLLPP 491 (795)
Q Consensus 416 ~ls~~~~~~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~----~~~~i~i~y~~~~~~~~ 491 (795)
.+++.. +++.+.|++|.++|+++-++-+. .|||+++.||++++..|.+. ..+.+.+ ++|++.+..
T Consensus 401 vl~geV---kdvlLLdVtpLsLgietlggvft-------~Li~rnttIptkksqvfstaadgqt~V~ikv-~qgere~~~ 469 (640)
T KOG0102|consen 401 VLSGEV---KDVLLLDVTPLSLGIETLGGVFT-------KLIPRNTTIPTKKSQVFSTAADGQTQVEIKV-FQGEREMVN 469 (640)
T ss_pred hhhccc---cceeeeecchHHHHHHhhhhhhe-------ecccCCcccCchhhhheeecccCCceEEEEe-eechhhhhc
Confidence 999754 78999999999999999988764 89999999999999999875 3488888 999999877
Q ss_pred CCCCCceeEEEEcCCccchhhhccCCCCCCceEEEEEEEecCCceEEeeeeeEEEEEEEeeccccccccccccCCCCCCc
Q 003784 492 GATSPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNIS 571 (795)
Q Consensus 492 ~~~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (795)
+|..+|+|.+.|||+++ +| .| .|.|+|.+|.||+++|++.+-.
T Consensus 470 --dnk~lG~f~l~gipp~p-----Rg--vp-qieVtfDIdanGI~~vsA~dk~--------------------------- 512 (640)
T KOG0102|consen 470 --DNKLLGSFILQGIPPAP-----RG--VP-QIEVTFDIDANGIGTVSAKDKG--------------------------- 512 (640)
T ss_pred --cCcccceeeecccCCCC-----CC--CC-ceeEEEeecCCceeeeehhhcc---------------------------
Confidence 69999999999999998 45 67 8999999999999977543310
Q ss_pred hhhhhhccccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHH
Q 003784 572 AETAAQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEA 651 (795)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~ 651 (795)
++++ -+|++. . ...||+++
T Consensus 513 ----------t~K~----------------------------------------------qsi~i~--~---sggLs~~e 531 (640)
T KOG0102|consen 513 ----------TGKS----------------------------------------------QSITIA--S---SGGLSKDE 531 (640)
T ss_pred ----------cCCc----------------------------------------------cceEEe--e---cCCCCHHH
Confidence 0000 035554 1 23599999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 003784 652 LVDAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEF 731 (795)
Q Consensus 652 ~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~g~~a~~~~~ 731 (795)
++.|++..+.+...|+.++++.+.+|..|+++|.....+.. |.+..+.++.+.|+..+....+.+-.- ...+.++.
T Consensus 532 i~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~~---~~~~~~~~~~~~i~~~i~~l~~~~~~~-~~~~~~~~ 607 (640)
T KOG0102|consen 532 IELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLKE---FEEKIPAEECEKLEEKISDLRELVANK-DSGDMEEI 607 (640)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhhhh---hhhhCcHHHHHHHHHHHHHHHHHHhhh-ccCChhhH
Confidence 99999999999999999999999999999999999999975 788889998889999998888887642 22334778
Q ss_pred HHHHHHHHHhhhHHHHHHH
Q 003784 732 QERLDVLKAIGDPVFFRFK 750 (795)
Q Consensus 732 ~~k~~~L~~~~~~i~~r~~ 750 (795)
..+...|++-..|+..-+.
T Consensus 608 k~~~~~l~q~~lkl~es~~ 626 (640)
T KOG0102|consen 608 KKAMSALQQASLKLFESAY 626 (640)
T ss_pred HHHHHHHHHhhhHHHHHHH
Confidence 8888888887777776443
No 19
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-82 Score=720.69 Aligned_cols=569 Identities=27% Similarity=0.448 Sum_probs=508.8
Q ss_pred CCcEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceeEEEEeCC-cEEEcHhHHHHHhhCcchhhhhhhhhcCCC
Q 003784 23 QSAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHES-TRLLGEEASGIIARYPHRVYSQLRDMIGKP 101 (795)
Q Consensus 23 ~~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~v~~~~~-~~~~G~~A~~~~~~~p~~~~~~~K~llG~~ 101 (795)
.+.+||||||||||+||++ .++. .+.++.|..|.|.+||+|+|..+ ++++|..|+.++..+|.+++..+||++|+.
T Consensus 4 ~~~~iGIDlGTTNS~vA~~--~~~~-~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~ 80 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVM--RGGG-LPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRG 80 (579)
T ss_pred CceEEEEEcCCCcEEEEEE--eCCC-CceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCC
Confidence 4579999999999999999 5552 56899999999999999999755 699999999999999999999999999986
Q ss_pred ChhhHhhHhhcCCCceEEECCCCcEEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHH
Q 003784 102 FKQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLM 181 (795)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~ 181 (795)
... ....+.+. |+.++|+++++++|+++++.++.+++..+.++|||||+||++.||++++
T Consensus 81 ~~~-------------------~~~~~~~~-~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~ 140 (579)
T COG0443 81 SNG-------------------LKISVEVD-GKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATK 140 (579)
T ss_pred CCC-------------------CcceeeeC-CeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHH
Confidence 110 01233333 3689999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCC
Q 003784 182 QAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDA 261 (795)
Q Consensus 182 ~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~ 261 (795)
+|+++|||+++++++||+|||++|+..+. .+.+|||||+||||||+|++++. .+.++|++++|+.
T Consensus 141 ~A~~iaGl~vlrlinEPtAAAlayg~~~~---~~~~vlV~DlGGGTfDvSll~~~------------~g~~ev~at~gd~ 205 (579)
T COG0443 141 DAARIAGLNVLRLINEPTAAALAYGLDKG---KEKTVLVYDLGGGTFDVSLLEIG------------DGVFEVLATGGDN 205 (579)
T ss_pred HHHHHcCCCeEEEecchHHHHHHhHhccC---CCcEEEEEEcCCCCEEEEEEEEc------------CCEEEEeecCCCc
Confidence 99999999999999999999999999874 56899999999999999999774 6799999999999
Q ss_pred CCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccCcceEEEeeHHHHHH
Q 003784 262 ELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSITRQKFEE 341 (795)
Q Consensus 262 ~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~l~~~~d~~~~itr~efe~ 341 (795)
++||++||.+|.+|+..+|..+ ++.++..++.+++||+.+||++|+.||...++.++++.+..+.++..+|||++||+
T Consensus 206 ~LGGddfD~~l~~~~~~~f~~~--~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~ 283 (579)
T COG0443 206 HLGGDDFDNALIDYLVMEFKGK--GGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEE 283 (579)
T ss_pred ccCchhHHHHHHHHHHHHhhcc--CCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHH
Confidence 9999999999999999999998 77899999999999999999999999999999999998888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHHHhcCCc
Q 003784 342 LCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGI 421 (795)
Q Consensus 342 l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~ls~~~ 421 (795)
++.+++.++..++.++|..++++..+|+.|+|+||++|||.|++.++++|| +.+...+||||+||.|||++|+.+++..
T Consensus 284 l~~dll~r~~~~~~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~-~~~~~~inpdeava~GAa~qa~~l~~~~ 362 (579)
T COG0443 284 LILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG-KEPEKSINPDEAVALGAAIQAAVLSGEV 362 (579)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhC-ccccccCCccHHHHHHHHHHHHhhcCcc
Confidence 999999999999999999999999999999999999999999999999999 5788999999999999999999999865
Q ss_pred cccCcceeEecceeeeEeeecCCccccCCCcceeeeeCCCCCCcceEEeeeecc----cEEEEEEeecCCCCCCCCCCCc
Q 003784 422 KLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHAK----DFEVSLAYESEDLLPPGATSPV 497 (795)
Q Consensus 422 ~~~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~~----~~~i~i~y~~~~~~~~~~~~~~ 497 (795)
. ++.+.|++|+++|+++.++.+. +++++++.+|.++...|.+.. .+.+++ |+|++.+.. +|..
T Consensus 363 ~---d~ll~Dv~plslgie~~~~~~~-------~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v-~qge~~~~~--~~~~ 429 (579)
T COG0443 363 P---DVLLLDVIPLSLGIETLGGVRT-------PIIERNTTIPVKKSQEFSTAADGQTAVAIHV-FQGEREMAA--DNKS 429 (579)
T ss_pred c---CceEEeeeeeccccccCcchhh-------hHHhcCCCCCcccceEEEeecCCCceeEEEE-Eecchhhcc--cCce
Confidence 3 7889999999999999886553 899999999999999998754 477888 999988776 5899
Q ss_pred eeEEEEcCCccchhhhccCCCCCCceEEEEEEEecCCceEEeeeeeEEEEEEEeeccccccccccccCCCCCCchhhhhh
Q 003784 498 FAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAETAAQ 577 (795)
Q Consensus 498 i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (795)
+|.|.+.+|++++ +| .| .|.++|.+|.||++.|+..+...
T Consensus 430 lg~f~l~~i~~~~-----~g--~~-~i~v~f~iD~~gi~~v~a~~~~~-------------------------------- 469 (579)
T COG0443 430 LGRFELDGIPPAP-----RG--VP-QIEVTFDIDANGILNVTAKDLGT-------------------------------- 469 (579)
T ss_pred eEEEECCCCCCCC-----CC--CC-ceEEEeccCCCcceEeeeecccC--------------------------------
Confidence 9999999999987 33 56 79999999999999876422100
Q ss_pred ccccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHHHHHHHH
Q 003784 578 NMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALVDAEA 657 (795)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~~~~~~~ 657 (795)
.++ -.+.|.. ... |++++++.|.+
T Consensus 470 -----~k~----------------------------------------------~~i~i~~----~~~-ls~~~i~~~~~ 493 (579)
T COG0443 470 -----GKE----------------------------------------------QSITIKA----SSG-LSDEEIERMVE 493 (579)
T ss_pred -----Cce----------------------------------------------EEEEEec----CCC-CCHHHHHHHHH
Confidence 000 0345442 233 99999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHH
Q 003784 658 KLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQERLDV 737 (795)
Q Consensus 658 ~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~g~~a~~~~~~~k~~~ 737 (795)
.++.+.+.|+..++..+.+|..|+++|.++..|.+. . .+++++++.+...+.+.++||+.+ .+++..+.++
T Consensus 494 ~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~---~-~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~ 564 (579)
T COG0443 494 DAEANAALDKKFRELVEARNEAESLIYSLEKALKEI---V-KVSEEEKEKIEEAITDLEEALEGE-----KEEIKAKIEE 564 (579)
T ss_pred HHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhhh---c-cCCHHHHHHHHHHHHHHHHHHhcc-----HHHHHHHHHH
Confidence 999999999999999999999999999999999864 3 889999999999999999999972 8999999999
Q ss_pred HHHhhhHHHHHHH
Q 003784 738 LKAIGDPVFFRFK 750 (795)
Q Consensus 738 L~~~~~~i~~r~~ 750 (795)
|+....++..++.
T Consensus 565 l~~~~~~~~~~~~ 577 (579)
T COG0443 565 LQEVTQKLAEKKY 577 (579)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999888754
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=7e-54 Score=477.19 Aligned_cols=346 Identities=19% Similarity=0.245 Sum_probs=287.5
Q ss_pred EEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceeEEEEe------------------------------------
Q 003784 26 VSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFH------------------------------------ 69 (795)
Q Consensus 26 vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~v~~~------------------------------------ 69 (795)
++|||||||||+||++ .+| .++++.+++|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~--~~~--~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (450)
T PRK11678 2 FIGFDYGTANCSVAVM--RDG--KPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREE 77 (450)
T ss_pred eEEEecCccceeeEEe--eCC--ceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccc
Confidence 6899999999999999 555 468889999999999999993
Q ss_pred -----CCcEEEcHhHHHHHhhCcchh--hhhhhhhcCCCChhhHhhHhhcCCCceEEECCCCcEEEEeCCCccccHHHHH
Q 003784 70 -----ESTRLLGEEASGIIARYPHRV--YSQLRDMIGKPFKQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELL 142 (795)
Q Consensus 70 -----~~~~~~G~~A~~~~~~~p~~~--~~~~K~llG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~ 142 (795)
+++.++|..|......+|.++ +..+|++||...- . .+....+++++
T Consensus 78 ~~~~~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~-------------~--------------~~~~~~~e~l~ 130 (450)
T PRK11678 78 DIDVTAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGL-------------K--------------PQQVALFEDLV 130 (450)
T ss_pred cccccccccchhHHHHHhhccCCCCceEEecchhhhccCCC-------------C--------------ccceeCHHHHH
Confidence 456789999999999999988 7799999997420 0 01224489999
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEecCCCCC-----HHHHHH---HHHHHHHhCCceeeecchhHHHHHHhhhcCCCCCC
Q 003784 143 AMVLSYAVNLVDTHAKLAVKDFVISVPPYFG-----QAERKG---LMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNE 214 (795)
Q Consensus 143 a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~-----~~qR~a---l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~ 214 (795)
+++|++|++.++.+++.++.++|||||++|+ +.||++ +++||+.|||++++|++||+|||++|+... ..
T Consensus 131 a~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~---~~ 207 (450)
T PRK11678 131 CAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATL---TE 207 (450)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhcccc---CC
Confidence 9999999999999999999999999999998 778766 799999999999999999999999998653 34
Q ss_pred CcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCCCCchHHHHHHHH-HHHHHHHhhh--cCCCCCC-
Q 003784 215 SRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLV-EYFADEFNKQ--VGNGVDV- 290 (795)
Q Consensus 215 ~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~-~~l~~~~~~~--~~~~~~~- 290 (795)
+..+||||+||||+|+|++++..... .......+++++.|. .+||++||..|+ +++...|... ..++.++
T Consensus 208 ~~~vlV~D~GGGT~D~Svv~~~~~~~-----~~~~r~~~vla~~G~-~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p 281 (450)
T PRK11678 208 EKRVLVVDIGGGTTDCSMLLMGPSWR-----GRADRSASLLGHSGQ-RIGGNDLDIALAFKQLMPLLGMGSETEKGIALP 281 (450)
T ss_pred CCeEEEEEeCCCeEEEEEEEecCccc-----ccCCcceeEEecCCC-CCChHHHHHHHHHHHHHHHhhhchhhccCCcCc
Confidence 68899999999999999999853110 112345689999985 899999999998 6788877521 0011110
Q ss_pred ----------------------------------CCCHHHH------------HHHHHHHHHHhhhccCCCceeEEEeec
Q 003784 291 ----------------------------------RKSPKAM------------AKLKKQVKRTKEILSANTMAPISVESL 324 (795)
Q Consensus 291 ----------------------------------~~~~~~~------------~~L~~~~e~~K~~LS~~~~~~i~i~~l 324 (795)
..+++.+ .+|+.+||++|+.||.+.++++.++.+
T Consensus 282 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~ 361 (450)
T PRK11678 282 SLPFWNAVAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFI 361 (450)
T ss_pred chhhhhhhhhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEeccc
Confidence 0123223 378899999999999999999999865
Q ss_pred ccCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcch
Q 003784 325 YVDIDFRSSITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADE 404 (795)
Q Consensus 325 ~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~de 404 (795)
. .++...|||++|+++++++++++..+++++|+.+++. ++.|+||||+||+|.|++.|++.||..++ ...+|.+
T Consensus 362 ~--~~~~~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v-~~g~~~~ 435 (450)
T PRK11678 362 S--DGLATEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPI-VGGDDFG 435 (450)
T ss_pred C--CCcceeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcE-EeCCCcc
Confidence 4 3567899999999999999999999999999999976 47899999999999999999999987655 4679999
Q ss_pred hhHhhHHHHHHHh
Q 003784 405 AIVLGASLLAANL 417 (795)
Q Consensus 405 aVa~GAa~~aa~l 417 (795)
+||.|+|++|..+
T Consensus 436 sVa~Gla~~a~~~ 448 (450)
T PRK11678 436 SVTAGLARWAQVV 448 (450)
T ss_pred hHHHHHHHHHHhh
Confidence 9999999999763
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=3.4e-37 Score=335.94 Aligned_cols=307 Identities=19% Similarity=0.296 Sum_probs=234.8
Q ss_pred EEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceeEEEEeCC--c-EEEcHhHHHHHhhCcchhhhhhhhhcCCCCh
Q 003784 27 SSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHES--T-RLLGEEASGIIARYPHRVYSQLRDMIGKPFK 103 (795)
Q Consensus 27 vGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~v~~~~~--~-~~~G~~A~~~~~~~p~~~~~~~K~llG~~~~ 103 (795)
+||||||+|++++.. + .+ .++. .||+|+|... . ..+|.+|..+..+.|.+....
T Consensus 6 ~gIDlGt~~~~i~~~----~-~~-~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~---------- 62 (336)
T PRK13928 6 IGIDLGTANVLVYVK----G-KG-IVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI---------- 62 (336)
T ss_pred eEEEcccccEEEEEC----C-CC-EEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE----------
Confidence 899999999999875 3 22 2332 5999999843 3 369999987766655543210
Q ss_pred hhHhhHhhcCCCceEEECCCCcEEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHHHH
Q 003784 104 QVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQA 183 (795)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~A 183 (795)
.| +.+| .+...+++..+|+++.+.+..........+|||||++|+..||+++.+|
T Consensus 63 ----------~p--------------i~~G-~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a 117 (336)
T PRK13928 63 ----------RP--------------LRDG-VIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREA 117 (336)
T ss_pred ----------cc--------------CCCC-eEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 01 1112 1233356677777777554332222234699999999999999999999
Q ss_pred HHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCCCC
Q 003784 184 AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAEL 263 (795)
Q Consensus 184 a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~l 263 (795)
++.||++.+.+++||+|||++|+... ..+..++|||+||||||++++++. +. ...++..+
T Consensus 118 ~~~ag~~~~~li~ep~Aaa~~~g~~~---~~~~~~lVvDiGggttdvsvv~~g-------------~~----~~~~~~~l 177 (336)
T PRK13928 118 AEQAGAKKVYLIEEPLAAAIGAGLDI---SQPSGNMVVDIGGGTTDIAVLSLG-------------GI----VTSSSIKV 177 (336)
T ss_pred HHHcCCCceEecccHHHHHHHcCCcc---cCCCeEEEEEeCCCeEEEEEEEeC-------------CE----EEeCCcCC
Confidence 99999999999999999999998754 235679999999999999999652 11 12356799
Q ss_pred chHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCC----ceeEEEe--ecccCcceEEEeeHH
Q 003784 264 GGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANT----MAPISVE--SLYVDIDFRSSITRQ 337 (795)
Q Consensus 264 GG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~----~~~i~i~--~l~~~~d~~~~itr~ 337 (795)
||++||+.|++++.++|... .. ...||++|+.++... ...+.+. .+..+.+..+.|+|+
T Consensus 178 GG~did~~i~~~l~~~~~~~------~~---------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~ 242 (336)
T PRK13928 178 AGDKFDEAIIRYIRKKYKLL------IG---------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSE 242 (336)
T ss_pred HHHHHHHHHHHHHHHHhchh------cC---------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHH
Confidence 99999999999998776322 11 357999999886431 2233332 334566778899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCcc-EEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHH
Q 003784 338 KFEELCEDLWERSLVPLREVLNYSG--LKMDEIY-AVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLA 414 (795)
Q Consensus 338 efe~l~~~~~~~i~~~i~~~l~~a~--~~~~~i~-~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~a 414 (795)
+|++++.+.++++...++++|+.++ +..+.++ .|+|+||+|++|.|++.|++.|+. ++....||++|||+|||+++
T Consensus 243 ~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~-~v~~~~~P~~ava~Gaa~~~ 321 (336)
T PRK13928 243 EIREALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKV-PVYIAEDPISCVALGTGKML 321 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCC-CceecCCHHHHHHHHHHHHH
Confidence 9999999999999999999999986 4456777 799999999999999999999986 66678899999999999998
Q ss_pred HHh
Q 003784 415 ANL 417 (795)
Q Consensus 415 a~l 417 (795)
..+
T Consensus 322 ~~~ 324 (336)
T PRK13928 322 ENI 324 (336)
T ss_pred hch
Confidence 764
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=1.2e-36 Score=330.54 Aligned_cols=307 Identities=18% Similarity=0.285 Sum_probs=240.4
Q ss_pred CcEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceeEEEEeCC-c--EEEcHhHHHHHhhCcchhhhhhhhhcCC
Q 003784 24 SAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHES-T--RLLGEEASGIIARYPHRVYSQLRDMIGK 100 (795)
Q Consensus 24 ~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~v~~~~~-~--~~~G~~A~~~~~~~p~~~~~~~K~llG~ 100 (795)
...+||||||+|+++ + .++ .++ +.| .||+|+|+++ . ..+|.+|..+..++|.++... +
T Consensus 4 ~~~~giDlGt~~~~i--~--~~~-~~~--~~~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~---- 64 (335)
T PRK13929 4 STEIGIDLGTANILV--Y--SKN-KGI--ILN------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--R---- 64 (335)
T ss_pred CCeEEEEcccccEEE--E--ECC-CcE--Eec------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--e----
Confidence 346999999999985 3 344 343 445 4999999743 2 579999999888888765331 1
Q ss_pred CChhhHhhHhhcCCCceEEECCCCcEEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCC--cEEEecCCCCCHHHHH
Q 003784 101 PFKQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVK--DFVISVPPYFGQAERK 178 (795)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~--~~VItVPa~f~~~qR~ 178 (795)
| +.+|. +.--++++.+|++++..++..++..+. .+|||||++|+..||+
T Consensus 65 --------------p--------------i~~G~-I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~ 115 (335)
T PRK13929 65 --------------P--------------MKDGV-IADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERR 115 (335)
T ss_pred --------------c--------------CCCCc-cCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHH
Confidence 0 11122 222278899999999988777765543 7999999999999999
Q ss_pred HHHHHHHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEec
Q 003784 179 GLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVR 258 (795)
Q Consensus 179 al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~ 258 (795)
++.+|++.||++++.+++||+|||++|+... .++..++|+|+||||||++++++. +. + ..
T Consensus 116 ~l~~a~~~ag~~~~~li~ep~Aaa~~~g~~~---~~~~~~lvvDiG~gtt~v~vi~~~-------------~~---~-~~ 175 (335)
T PRK13929 116 AISDAVKNCGAKNVHLIEEPVAAAIGADLPV---DEPVANVVVDIGGGTTEVAIISFG-------------GV---V-SC 175 (335)
T ss_pred HHHHHHHHcCCCeeEeecCHHHHHHhcCCCc---CCCceEEEEEeCCCeEEEEEEEeC-------------CE---E-Ee
Confidence 9999999999999999999999999998754 335789999999999999999652 21 1 23
Q ss_pred cCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCC----ceeEEEe--ecccCcceEE
Q 003784 259 WDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANT----MAPISVE--SLYVDIDFRS 332 (795)
Q Consensus 259 ~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~----~~~i~i~--~l~~~~d~~~ 332 (795)
++..+||++||+.|.+++.+.+. .... ...||++|+.|+... ...+.+. ++..+.+..+
T Consensus 176 ~~~~~GG~~id~~l~~~l~~~~~------~~~~---------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i 240 (335)
T PRK13929 176 HSIRIGGDQLDEDIVSFVRKKYN------LLIG---------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTI 240 (335)
T ss_pred cCcCCHHHHHHHHHHHHHHHHhC------cCcC---------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEE
Confidence 45689999999999999987542 2221 267999999998632 2223333 2345566788
Q ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCcc-EEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhh
Q 003784 333 SITRQKFEELCEDLWERSLVPLREVLNYSGL--KMDEIY-AVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLG 409 (795)
Q Consensus 333 ~itr~efe~l~~~~~~~i~~~i~~~l~~a~~--~~~~i~-~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~G 409 (795)
.|+|++|+++|.+.+.++...|.++|+.++. ..+.++ .|+|+||+|++|.+++++++.|+. ++....||+++|++|
T Consensus 241 ~i~~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~-~v~~~~~P~~~Va~G 319 (335)
T PRK13929 241 TLESKEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVV-PVHVAANPLESVAIG 319 (335)
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCC-CceeCCCHHHHHHHH
Confidence 9999999999999999999999999999864 346677 699999999999999999999986 666778999999999
Q ss_pred HHHHH
Q 003784 410 ASLLA 414 (795)
Q Consensus 410 Aa~~a 414 (795)
|+..-
T Consensus 320 a~~~~ 324 (335)
T PRK13929 320 TGRSL 324 (335)
T ss_pred HHHHH
Confidence 99773
No 23
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=4.1e-34 Score=312.09 Aligned_cols=309 Identities=21% Similarity=0.305 Sum_probs=226.5
Q ss_pred CcEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceeEEEEeCC-c--EEEcHhHHHHHhhCcchhhhhhhhhcCC
Q 003784 24 SAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHES-T--RLLGEEASGIIARYPHRVYSQLRDMIGK 100 (795)
Q Consensus 24 ~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~v~~~~~-~--~~~G~~A~~~~~~~p~~~~~~~K~llG~ 100 (795)
+..|||||||++++++.. | .+. ++ .+||+|+|... + .++|.+|..+..+.|.++...
T Consensus 5 ~~~igIDlGt~~~~i~~~----~-~~~-~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~------- 64 (334)
T PRK13927 5 SNDLGIDLGTANTLVYVK----G-KGI-VL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI------- 64 (334)
T ss_pred cceeEEEcCcceEEEEEC----C-CcE-EE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE-------
Confidence 346999999999998543 4 233 22 27999999643 2 489999988776655542110
Q ss_pred CChhhHhhHhhcCCCceEEECCCCcEEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHH
Q 003784 101 PFKQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGL 180 (795)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al 180 (795)
.| +.+|..... +.+..+|+++........... ..+|+|||++|+..||+++
T Consensus 65 -------------~p--------------i~~G~i~d~-~~~~~ll~~~~~~~~~~~~~~-~~~vi~vP~~~~~~~r~~~ 115 (334)
T PRK13927 65 -------------RP--------------MKDGVIADF-DVTEKMLKYFIKKVHKNFRPS-PRVVICVPSGITEVERRAV 115 (334)
T ss_pred -------------ec--------------CCCCeecCH-HHHHHHHHHHHHHHhhccCCC-CcEEEEeCCCCCHHHHHHH
Confidence 01 112211111 223444444443332222211 3799999999999999999
Q ss_pred HHHHHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccC
Q 003784 181 MQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWD 260 (795)
Q Consensus 181 ~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~ 260 (795)
++|++.||++.+.+++||+|||++|+... ..+..++|||+||||||++++++. +. ...+.
T Consensus 116 ~~a~~~ag~~~~~li~ep~aaa~~~g~~~---~~~~~~lvvDiGggttdvs~v~~~-------------~~----~~~~~ 175 (334)
T PRK13927 116 RESALGAGAREVYLIEEPMAAAIGAGLPV---TEPTGSMVVDIGGGTTEVAVISLG-------------GI----VYSKS 175 (334)
T ss_pred HHHHHHcCCCeeccCCChHHHHHHcCCcc---cCCCeEEEEEeCCCeEEEEEEecC-------------Ce----EeeCC
Confidence 99999999999999999999999998754 234678999999999999999652 11 12344
Q ss_pred CCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCc----eeEEE--eecccCcceEEEe
Q 003784 261 AELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTM----APISV--ESLYVDIDFRSSI 334 (795)
Q Consensus 261 ~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~----~~i~i--~~l~~~~d~~~~i 334 (795)
..+||++||+.|.+++.+++. ... . ...||++|+.++.... ..+.+ +++..+.+..+.|
T Consensus 176 ~~lGG~~id~~l~~~l~~~~~------~~~--~-------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 240 (334)
T PRK13927 176 VRVGGDKFDEAIINYVRRNYN------LLI--G-------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITI 240 (334)
T ss_pred cCChHHHHHHHHHHHHHHHhC------cCc--C-------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEE
Confidence 579999999999999987653 111 1 2468999999875432 22333 3344566678899
Q ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCcc-EEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHH
Q 003784 335 TRQKFEELCEDLWERSLVPLREVLNYSGLK--MDEIY-AVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGAS 411 (795)
Q Consensus 335 tr~efe~l~~~~~~~i~~~i~~~l~~a~~~--~~~i~-~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa 411 (795)
+|++|++++.+.++++..+|.++|++++.. .+.++ .|+|+||+|++|.++++|++.|+. ++....||+++||+||+
T Consensus 241 ~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~-~v~~~~~P~~ava~Ga~ 319 (334)
T PRK13927 241 SSNEIREALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGL-PVHVAEDPLTCVARGTG 319 (334)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCC-CcEecCCHHHHHHHHHH
Confidence 999999999999999999999999988643 23334 599999999999999999999985 67778899999999999
Q ss_pred HHHHHh
Q 003784 412 LLAANL 417 (795)
Q Consensus 412 ~~aa~l 417 (795)
+++..+
T Consensus 320 ~~~~~~ 325 (334)
T PRK13927 320 KALENI 325 (334)
T ss_pred HHHhhH
Confidence 998763
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=5.7e-34 Score=310.40 Aligned_cols=307 Identities=20% Similarity=0.279 Sum_probs=222.6
Q ss_pred EEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceeEEEEeCC-----c--EEEcHhHHHHHhhCcchhhhhhhhhc
Q 003784 26 VSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHES-----T--RLLGEEASGIIARYPHRVYSQLRDMI 98 (795)
Q Consensus 26 vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~v~~~~~-----~--~~~G~~A~~~~~~~p~~~~~~~K~ll 98 (795)
-+||||||+||++++. + .++ ++ ..||+|+|.++ . ..+|.+|.....+.|.++- +++-+
T Consensus 4 ~~giDlGt~~s~i~~~----~-~~~-~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~pi 68 (333)
T TIGR00904 4 DIGIDLGTANTLVYVK----G-RGI-VL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AIRPM 68 (333)
T ss_pred eeEEecCcceEEEEEC----C-CCE-EE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EEecC
Confidence 3999999999998875 2 233 33 37999999733 3 6799999877655554421 11111
Q ss_pred CCCChhhHhhHhhcCCCceEEECCCCcEEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHH
Q 003784 99 GKPFKQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERK 178 (795)
Q Consensus 99 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~ 178 (795)
.+|..... +.+..+++|+........+..-..+|+|||++|+..||+
T Consensus 69 --------------------------------~~G~i~d~-~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~ 115 (333)
T TIGR00904 69 --------------------------------KDGVIADF-EVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERR 115 (333)
T ss_pred --------------------------------CCCEEEcH-HHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHH
Confidence 11211111 223334444443332211111137999999999999999
Q ss_pred HHHHHHHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEec
Q 003784 179 GLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVR 258 (795)
Q Consensus 179 al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~ 258 (795)
++.+|++.||++.+.+++||+|||++|+... ..+..++|||+||||||++++++. +. ...
T Consensus 116 ~~~~~~~~ag~~~~~li~ep~aaa~~~g~~~---~~~~~~lVvDiG~gttdvs~v~~~-------------~~----~~~ 175 (333)
T TIGR00904 116 AVKESALSAGAREVYLIEEPMAAAIGAGLPV---EEPTGSMVVDIGGGTTEVAVISLG-------------GI----VVS 175 (333)
T ss_pred HHHHHHHHcCCCeEEEecCHHHHHHhcCCcc---cCCceEEEEEcCCCeEEEEEEEeC-------------CE----Eec
Confidence 9999999999999999999999999998653 235679999999999999999753 11 123
Q ss_pred cCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCc-----eeEEEee--cccCcceE
Q 003784 259 WDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTM-----APISVES--LYVDIDFR 331 (795)
Q Consensus 259 ~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~-----~~i~i~~--l~~~~d~~ 331 (795)
++..+||++||+.|++++.+++.. ... +..||++|+.|+.... ..+.+.. ...+....
T Consensus 176 ~~~~lGG~did~~l~~~l~~~~~~------~~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (333)
T TIGR00904 176 RSIRVGGDEFDEAIINYIRRTYNL------LIG---------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRT 240 (333)
T ss_pred CCccchHHHHHHHHHHHHHHHhcc------cCC---------HHHHHHHHHHHhccccccccccceeecCccccCCCCeE
Confidence 455899999999999999866521 111 3678999999875321 2222221 12234456
Q ss_pred EEeeHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCc-c-EEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHh
Q 003784 332 SSITRQKFEELCEDLWERSLVPLREVLNYSGLKM-DEI-Y-AVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVL 408 (795)
Q Consensus 332 ~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~-~~i-~-~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~ 408 (795)
..|++++|.+++.+.+.++...+.+.|+.++... .++ + .|+|+||+|++|.++++|++.|+. ++....||+++||.
T Consensus 241 ~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~-~v~~~~~P~~~va~ 319 (333)
T TIGR00904 241 IEITSVEVREALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGL-PVIVADDPLLCVAK 319 (333)
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCC-CceecCChHHHHHH
Confidence 7899999999999999999999999999876432 244 3 699999999999999999999985 67778899999999
Q ss_pred hHHHHHHH
Q 003784 409 GASLLAAN 416 (795)
Q Consensus 409 GAa~~aa~ 416 (795)
||++++..
T Consensus 320 Ga~~~~~~ 327 (333)
T TIGR00904 320 GTGKALED 327 (333)
T ss_pred HHHHHHhC
Confidence 99999654
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=5.8e-33 Score=303.43 Aligned_cols=308 Identities=22% Similarity=0.295 Sum_probs=228.7
Q ss_pred EEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceeEEEEeC-C--cEEEcHhHHHHHhhCcchhhhhhhhhcCCCC
Q 003784 26 VSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHE-S--TRLLGEEASGIIARYPHRVYSQLRDMIGKPF 102 (795)
Q Consensus 26 vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~v~~~~-~--~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~ 102 (795)
.+||||||++++++++ | .++ ++ .+||+|+|.+ + ..++|.+|.....+.|.+.- ++
T Consensus 10 ~vgiDlGt~~t~i~~~----~-~~~-~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~------- 67 (335)
T PRK13930 10 DIGIDLGTANTLVYVK----G-KGI-VL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIE--AI------- 67 (335)
T ss_pred ceEEEcCCCcEEEEEC----C-CCE-EE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeE--Ee-------
Confidence 4999999999999886 3 222 22 2599999974 2 35899999876655454311 00
Q ss_pred hhhHhhHhhcCCCceEEECCCCcEEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHHH
Q 003784 103 KQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQ 182 (795)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~ 182 (795)
.| +.+|.... -+.+..+|+++.+.+..........+|+|+|++|+..+|+++.+
T Consensus 68 -----------~p--------------i~~G~i~d-~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~ 121 (335)
T PRK13930 68 -----------RP--------------LKDGVIAD-FEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE 121 (335)
T ss_pred -----------ec--------------CCCCeEcC-HHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH
Confidence 01 11222112 23466677777655544333335689999999999999999999
Q ss_pred HHHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCCC
Q 003784 183 AAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAE 262 (795)
Q Consensus 183 Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~ 262 (795)
|++.+|++.+.+++||+|||++|+... ..+..++|||+||||||++++... .+ + ..+...
T Consensus 122 ~~e~~g~~~~~lv~ep~AAa~a~g~~~---~~~~~~lVvDiG~gttdvs~v~~g--------------~~--~-~~~~~~ 181 (335)
T PRK13930 122 AAEHAGAREVYLIEEPMAAAIGAGLPV---TEPVGNMVVDIGGGTTEVAVISLG--------------GI--V-YSESIR 181 (335)
T ss_pred HHHHcCCCeEEecccHHHHHHhcCCCc---CCCCceEEEEeCCCeEEEEEEEeC--------------CE--E-eecCcC
Confidence 999999999999999999999998654 123567999999999999999542 11 1 245568
Q ss_pred CchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCc----eeEEEe--ecccCcceEEEeeH
Q 003784 263 LGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTM----APISVE--SLYVDIDFRSSITR 336 (795)
Q Consensus 263 lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~----~~i~i~--~l~~~~d~~~~itr 336 (795)
+||.+||+.|.+++.+++. .+.. ...||++|+.++.... ..+.+. .+..+.+..+.|+|
T Consensus 182 lGG~~id~~l~~~l~~~~~------~~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 246 (335)
T PRK13930 182 VAGDEMDEAIVQYVRRKYN------LLIG---------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISS 246 (335)
T ss_pred chhHHHHHHHHHHHHHHhC------CCCC---------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECH
Confidence 9999999999999987642 2211 2578999999975432 223333 23344556789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCccE-EEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHH
Q 003784 337 QKFEELCEDLWERSLVPLREVLNYSGLK--MDEIYA-VELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLL 413 (795)
Q Consensus 337 ~efe~l~~~~~~~i~~~i~~~l~~a~~~--~~~i~~-V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~ 413 (795)
++|++++.+.++++.+.+.++|+.+... .+.++. |+|+||+|++|.++++|++.|+. ++....+|+++||+||+++
T Consensus 247 ~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~-~v~~~~~p~~ava~Ga~~~ 325 (335)
T PRK13930 247 EEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGL-PVHIAEDPLTCVARGTGKA 325 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCC-CceecCCHHHHHHHHHHHH
Confidence 9999999999999999999999987532 233454 99999999999999999999985 5667779999999999999
Q ss_pred HHHh
Q 003784 414 AANL 417 (795)
Q Consensus 414 aa~l 417 (795)
+...
T Consensus 326 ~~~~ 329 (335)
T PRK13930 326 LENL 329 (335)
T ss_pred HhCh
Confidence 8753
No 26
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.97 E-value=3.7e-29 Score=265.30 Aligned_cols=307 Identities=23% Similarity=0.356 Sum_probs=216.5
Q ss_pred cEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceeEEEEeCC---cEEEcHhHHHHHhhCcchhhhhhhhhcCCC
Q 003784 25 AVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHES---TRLLGEEASGIIARYPHRVYSQLRDMIGKP 101 (795)
Q Consensus 25 ~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~v~~~~~---~~~~G~~A~~~~~~~p~~~~~~~K~llG~~ 101 (795)
.-+||||||+|+.|+.- + .+ ++.++ ||+|+|+.. -..+|.+|..+..+.|.+.-.
T Consensus 2 ~~igIDLGT~~t~i~~~----~-~G--iv~~e------pSvVA~~~~~~~i~avG~~A~~m~gktp~~i~~--------- 59 (326)
T PF06723_consen 2 KDIGIDLGTSNTRIYVK----G-KG--IVLNE------PSVVAYDKDTGKILAVGDEAKAMLGKTPDNIEV--------- 59 (326)
T ss_dssp SEEEEEE-SSEEEEEET----T-TE--EEEEE------ES-EEEETTT--EEEESHHHHTTTTS-GTTEEE---------
T ss_pred CceEEecCcccEEEEEC----C-CC--EEEec------CcEEEEECCCCeEEEEhHHHHHHhhcCCCccEE---------
Confidence 46899999999998543 3 22 44443 999999753 245899997765555543110
Q ss_pred ChhhHhhHhhcCCCceEEECCCCcEEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHH
Q 003784 102 FKQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLM 181 (795)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~ 181 (795)
..| +.+|. +.=.++...+|+++.+.+.......-..++|+||+.-++.+|+++.
T Consensus 60 -----------~~P--------------l~~Gv-I~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~ 113 (326)
T PF06723_consen 60 -----------VRP--------------LKDGV-IADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALI 113 (326)
T ss_dssp -----------E-S--------------EETTE-ESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHH
T ss_pred -----------Ecc--------------ccCCc-ccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHH
Confidence 011 22332 2223567778888877766532222347999999999999999999
Q ss_pred HHHHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCC
Q 003784 182 QAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDA 261 (795)
Q Consensus 182 ~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~ 261 (795)
+|+..||...+.||+||.|||+..+..- ..+...||+|+||||||++++.+ .+.+.-...
T Consensus 114 ~a~~~aGa~~V~li~ep~AaAiGaGl~i---~~~~g~miVDIG~GtTdiavisl-------------ggiv~s~si---- 173 (326)
T PF06723_consen 114 DAARQAGARKVYLIEEPIAAAIGAGLDI---FEPRGSMIVDIGGGTTDIAVISL-------------GGIVASRSI---- 173 (326)
T ss_dssp HHHHHTT-SEEEEEEHHHHHHHHTT--T---TSSS-EEEEEE-SS-EEEEEEET-------------TEEEEEEEE----
T ss_pred HHHHHcCCCEEEEecchHHHHhcCCCCC---CCCCceEEEEECCCeEEEEEEEC-------------CCEEEEEEE----
Confidence 9999999999999999999999888764 34678999999999999999953 222222222
Q ss_pred CCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCC----ceeEEEe--ecccCcceEEEee
Q 003784 262 ELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANT----MAPISVE--SLYVDIDFRSSIT 335 (795)
Q Consensus 262 ~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~----~~~i~i~--~l~~~~d~~~~it 335 (795)
..||++||+.|.+|+.+++.-. +. ...||++|+.++.-. ...+.|. ++..+....+.|+
T Consensus 174 ~~gG~~~DeaI~~~ir~~y~l~------Ig---------~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~ 238 (326)
T PF06723_consen 174 RIGGDDIDEAIIRYIREKYNLL------IG---------ERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEIT 238 (326)
T ss_dssp S-SHHHHHHHHHHHHHHHHSEE-----------------HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEE
T ss_pred EecCcchhHHHHHHHHHhhCcc------cC---------HHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEc
Confidence 7899999999999999987422 21 467899999986542 2234443 5678888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCc--cEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHH
Q 003784 336 RQKFEELCEDLWERSLVPLREVLNYSGLK-MDEI--YAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASL 412 (795)
Q Consensus 336 r~efe~l~~~~~~~i~~~i~~~l~~a~~~-~~~i--~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~ 412 (795)
-+++.+.|.+.+.+|...|+++|+...-. ..|| +.|+|+||+++++.+.+.|++.++- ++...-||..|||.||..
T Consensus 239 ~~ev~~ai~~~~~~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~-pV~va~~P~~~va~G~~~ 317 (326)
T PF06723_consen 239 SSEVREAIEPPVDQIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEETGV-PVRVADDPLTAVARGAGK 317 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS--EEE-SSTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCC-CEEEcCCHHHHHHHHHHH
Confidence 99999999999999999999999975322 1233 5799999999999999999999986 788889999999999986
Q ss_pred HHH
Q 003784 413 LAA 415 (795)
Q Consensus 413 ~aa 415 (795)
...
T Consensus 318 ~l~ 320 (326)
T PF06723_consen 318 LLE 320 (326)
T ss_dssp TTC
T ss_pred HHh
Confidence 643
No 27
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.96 E-value=4e-28 Score=250.04 Aligned_cols=201 Identities=16% Similarity=0.219 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceeeecchhHHHHHHhhhcCCCCCCCcE
Q 003784 138 VEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRH 217 (795)
Q Consensus 138 ~eel~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~ 217 (795)
--+.++++|+++++.++..++.++.++|+|||++|++.||+++.+|++.||++++.+++||.|||++|+.. .
T Consensus 38 d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~--------~ 109 (239)
T TIGR02529 38 DFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK--------N 109 (239)
T ss_pred EhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC--------C
Confidence 34688999999999999888888999999999999999999999999999999999999999999998643 2
Q ss_pred EEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHH
Q 003784 218 VVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAM 297 (795)
Q Consensus 218 vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 297 (795)
.+|+|+||||||+++++ .+. ++. ..+..+||++||+.|.+++ +.+
T Consensus 110 ~~vvDiGggtt~i~i~~--------------~G~--i~~-~~~~~~GG~~it~~Ia~~~----------~i~-------- 154 (239)
T TIGR02529 110 GAVVDVGGGTTGISILK--------------KGK--VIY-SADEPTGGTHMSLVLAGAY----------GIS-------- 154 (239)
T ss_pred cEEEEeCCCcEEEEEEE--------------CCe--EEE-EEeeecchHHHHHHHHHHh----------CCC--------
Confidence 59999999999999984 232 222 3355799999999876543 222
Q ss_pred HHHHHHHHHHhhhccCCCceeEEEeecccCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCc
Q 003784 298 AKLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGG 377 (795)
Q Consensus 298 ~~L~~~~e~~K~~LS~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~ 377 (795)
+.+||++|+.++ +.+++.+++.++++++...+++.|+.. .++.|+|+||+
T Consensus 155 ---~~~AE~~K~~~~----------------------~~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~ 204 (239)
T TIGR02529 155 ---FEEAEEYKRGHK----------------------DEEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGA 204 (239)
T ss_pred ---HHHHHHHHHhcC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECch
Confidence 378899998654 146677899999999999999999864 45689999999
Q ss_pred cCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHH
Q 003784 378 TRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASL 412 (795)
Q Consensus 378 sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~ 412 (795)
|++|.+++.+++.|+. ++..+.||++++|.|||+
T Consensus 205 a~ipgl~e~l~~~lg~-~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 205 CSFSGFADVFEKQLGL-NVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred hcchhHHHHHHHHhCC-CcccCCCCCeehhheeec
Confidence 9999999999999986 677789999999999986
No 28
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.95 E-value=8.2e-26 Score=229.58 Aligned_cols=311 Identities=23% Similarity=0.324 Sum_probs=235.2
Q ss_pred CcEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceeEEEEeC--Cc---EEEcHhHHHHHhhCcchhhhhhhhhc
Q 003784 24 SAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHE--ST---RLLGEEASGIIARYPHRVYSQLRDMI 98 (795)
Q Consensus 24 ~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~v~~~~--~~---~~~G~~A~~~~~~~p~~~~~~~K~ll 98 (795)
+..+||||||.|+.|..- |+ -|++|+ ||+|++.. +. ..+|.+|+.+..+.|.+...
T Consensus 6 s~diGIDLGTanTlV~~k----~k---gIVl~e------PSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~a------ 66 (342)
T COG1077 6 SNDIGIDLGTANTLVYVK----GK---GIVLNE------PSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIVA------ 66 (342)
T ss_pred cccceeeecccceEEEEc----Cc---eEEecC------ceEEEEeecCCCceEEEehHHHHHHhccCCCCceE------
Confidence 458999999999999764 31 266675 99999965 32 35899997766665554211
Q ss_pred CCCChhhHhhHhhcCCCceEEECCCCcEEEEeCCCccccHHHHHHHHHHHHHHHHHhhcC-CCCCcEEEecCCCCCHHHH
Q 003784 99 GKPFKQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAK-LAVKDFVISVPPYFGQAER 177 (795)
Q Consensus 99 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~-~~~~~~VItVPa~f~~~qR 177 (795)
+.+ ..+| .+.-.+++..+|+|+.+.+..... .....++++||..-++-+|
T Consensus 67 -------------------iRP---------mkdG-VIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VEr 117 (342)
T COG1077 67 -------------------IRP---------MKDG-VIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVER 117 (342)
T ss_pred -------------------Eee---------cCCc-EeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHH
Confidence 011 1122 234446777888888887764333 3334699999999999999
Q ss_pred HHHHHHHHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEe
Q 003784 178 KGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDV 257 (795)
Q Consensus 178 ~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~ 257 (795)
+|+++|++.||...+.++.||.|||+..++.- ..+..-+|||+||||||++++.+. +.+.
T Consensus 118 rAi~ea~~~aGa~~V~lieEp~aAAIGaglpi---~ep~G~mvvDIGgGTTevaVISlg-------------giv~---- 177 (342)
T COG1077 118 RAIKEAAESAGAREVYLIEEPMAAAIGAGLPI---MEPTGSMVVDIGGGTTEVAVISLG-------------GIVS---- 177 (342)
T ss_pred HHHHHHHHhccCceEEEeccHHHHHhcCCCcc---cCCCCCEEEEeCCCceeEEEEEec-------------CEEE----
Confidence 99999999999999999999999999876543 234567999999999999999652 3222
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCC--------CceeEEEeecccCcc
Q 003784 258 RWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSAN--------TMAPISVESLYVDID 329 (795)
Q Consensus 258 ~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~--------~~~~i~i~~l~~~~d 329 (795)
.....+||+.||+.|.+|+.++|+- -+- . ..+|++|...... .+.++.-.++..+..
T Consensus 178 ~~Sirv~GD~~De~Ii~yvr~~~nl------~IG--e-------~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlP 242 (342)
T COG1077 178 SSSVRVGGDKMDEAIIVYVRKKYNL------LIG--E-------RTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLP 242 (342)
T ss_pred EeeEEEecchhhHHHHHHHHHHhCe------eec--H-------HHHHHHHHHhcccccccCCccceeeEEeeecccCCC
Confidence 2223789999999999999988642 221 1 3477777765321 223455556777888
Q ss_pred eEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCccE-EEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhh
Q 003784 330 FRSSITRQKFEELCEDLWERSLVPLREVLNYSG--LKMDEIYA-VELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAI 406 (795)
Q Consensus 330 ~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~--~~~~~i~~-V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaV 406 (795)
-.++++-++..+.+++.+++|.+.++..|+... +..+-++. ++|+||+|.+..+.+.|.+..+. ++....+|-.||
T Consensus 243 k~i~i~s~ev~eal~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~-pv~ia~~pL~~V 321 (342)
T COG1077 243 KTITINSEEIAEALEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGV-PVIIADDPLTCV 321 (342)
T ss_pred eeEEEcHHHHHHHHHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCC-eEEECCChHHHH
Confidence 899999999999999999999999999999853 44445565 99999999999999999999876 667788999999
Q ss_pred HhhHHHHHHHhc
Q 003784 407 VLGASLLAANLS 418 (795)
Q Consensus 407 a~GAa~~aa~ls 418 (795)
|+|+.+....+.
T Consensus 322 a~G~G~~le~~~ 333 (342)
T COG1077 322 AKGTGKALEALD 333 (342)
T ss_pred HhccchhhhhhH
Confidence 999998877654
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.94 E-value=8.5e-25 Score=229.34 Aligned_cols=202 Identities=16% Similarity=0.225 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEE
Q 003784 139 EELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHV 218 (795)
Q Consensus 139 eel~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~v 218 (795)
.+.....|+++++.++.+++.++..++++||++|+..+|+++.+|++.||+++..+++||.|++.+|... ..
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~--------~~ 137 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID--------NG 137 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC--------Cc
Confidence 4567778999999999888888999999999999999999999999999999999999999999887542 15
Q ss_pred EEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHH
Q 003784 219 VFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMA 298 (795)
Q Consensus 219 lV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 298 (795)
+++|+||||||+++++ .+.+ ..+ .+..+||++||+.|++++. .+
T Consensus 138 ~vvDIGggtt~i~v~~--------------~g~~--~~~-~~~~~GG~~it~~Ia~~l~----------i~--------- 181 (267)
T PRK15080 138 AVVDIGGGTTGISILK--------------DGKV--VYS-ADEPTGGTHMSLVLAGAYG----------IS--------- 181 (267)
T ss_pred EEEEeCCCcEEEEEEE--------------CCeE--EEE-ecccCchHHHHHHHHHHhC----------CC---------
Confidence 8999999999999983 3332 222 4668999999999987651 11
Q ss_pred HHHHHHHHHhhhccCCCceeEEEeecccCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCcc
Q 003784 299 KLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGT 378 (795)
Q Consensus 299 ~L~~~~e~~K~~LS~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~s 378 (795)
+.+||++|+.++ +++++.++++++++++.+.+++.++.. .++.|+|+||+|
T Consensus 182 --~~eAE~lK~~~~----------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s 232 (267)
T PRK15080 182 --FEEAEQYKRDPK----------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTC 232 (267)
T ss_pred --HHHHHHHHhccC----------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcc
Confidence 467888887652 357899999999999999999999854 678999999999
Q ss_pred CCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHH
Q 003784 379 RVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLA 414 (795)
Q Consensus 379 riP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~a 414 (795)
++|.+++.+++.|+. ++....||+.++|.|||+++
T Consensus 233 ~lpgl~e~l~~~lg~-~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 233 CLPGFEEVFEKQTGL-PVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred cchhHHHHHHHHhCC-CcccCCCchHHHHHHHHhhC
Confidence 999999999999986 67778999999999999874
No 30
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.88 E-value=1.4e-20 Score=208.17 Aligned_cols=196 Identities=18% Similarity=0.241 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEE
Q 003784 174 QAERKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQ 253 (795)
Q Consensus 174 ~~qR~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~ 253 (795)
....+.+.+|++.||+++..++.||.|+|++|.... ..+..++++|+||||||+++++ .+.+.
T Consensus 157 ~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~---~~~~~~~vvDiG~gtt~i~i~~--------------~g~~~ 219 (371)
T TIGR01174 157 STILRNLVKCVERCGLEVDNIVLSGLASAIAVLTED---EKELGVCLIDIGGGTTDIAVYT--------------GGSIR 219 (371)
T ss_pred HHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcc---hhcCCEEEEEeCCCcEEEEEEE--------------CCEEE
Confidence 345778889999999999999999999999885432 2346799999999999999994 23222
Q ss_pred EEEeccCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCC------CceeEEEeecccC
Q 003784 254 VKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSAN------TMAPISVESLYVD 327 (795)
Q Consensus 254 vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~------~~~~i~i~~l~~~ 327 (795)
. .....+||++||+.|.+.+. . .+.+||++|+.++.. ....+.++.+.
T Consensus 220 ~---~~~i~~GG~~it~~i~~~l~----------~-----------~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~-- 273 (371)
T TIGR01174 220 Y---TKVIPIGGNHITKDIAKALR----------T-----------PLEEAERIKIKYGCASIPLEGPDENIEIPSVG-- 273 (371)
T ss_pred E---EeeecchHHHHHHHHHHHhC----------C-----------CHHHHHHHHHHeeEecccCCCCCCEEEeccCC--
Confidence 1 23347999999998876431 1 157899999998753 24456666543
Q ss_pred cceEEEeeHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCCCccE-EEEecCccCCHHHHHHHHHHhCCC-ccCC------
Q 003784 328 IDFRSSITRQKFEELCEDLWERSLVPLR-EVLNYSGLKMDEIYA-VELIGGGTRVPKLQAKLQEYLGRT-ELDR------ 398 (795)
Q Consensus 328 ~d~~~~itr~efe~l~~~~~~~i~~~i~-~~l~~a~~~~~~i~~-V~LvGG~sriP~v~~~l~~~f~~~-~i~~------ 398 (795)
.+....|+|++|++++.+.++++...++ +.|+.++.. .+++. |+|+||+|++|.+++.+++.|+.. ++..
T Consensus 274 ~~~~~~is~~~l~~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~ 352 (371)
T TIGR01174 274 ERPPRSLSRKELAEIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGG 352 (371)
T ss_pred CCCCeEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCC
Confidence 3556799999999999999999999997 999998876 67777 999999999999999999999864 1111
Q ss_pred ----CCCcchhhHhhHHHH
Q 003784 399 ----HLDADEAIVLGASLL 413 (795)
Q Consensus 399 ----~~n~deaVa~GAa~~ 413 (795)
.-+|..++|.|.++|
T Consensus 353 ~~~~~~~p~~~~a~Gl~~~ 371 (371)
T TIGR01174 353 LTEDVNDPEYSTAVGLLLY 371 (371)
T ss_pred chhhcCCcHHHHHHHHHhC
Confidence 126777888888764
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.84 E-value=9.4e-19 Score=195.88 Aligned_cols=197 Identities=17% Similarity=0.162 Sum_probs=146.6
Q ss_pred HHHHHHHHHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEE
Q 003784 177 RKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKD 256 (795)
Q Consensus 177 R~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~ 256 (795)
.+.+.+|++.|||++..++.||.|+|.++.... +.+..++++|+||||||++++. .+.+.
T Consensus 168 ~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~---e~~~gv~vvDiGggtTdisv~~--------------~G~l~--- 227 (420)
T PRK09472 168 AKNIVKAVERCGLKVDQLIFAGLASSYAVLTED---ERELGVCVVDIGGGTMDIAVYT--------------GGALR--- 227 (420)
T ss_pred HHHHHHHHHHcCCeEeeEEehhhHHHHHhcChh---hhhcCeEEEEeCCCceEEEEEE--------------CCEEE---
Confidence 334467999999999999999999999885443 2356799999999999999994 33322
Q ss_pred eccCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccC------CCceeEEEeecccCcce
Q 003784 257 VRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSA------NTMAPISVESLYVDIDF 330 (795)
Q Consensus 257 ~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~------~~~~~i~i~~l~~~~d~ 330 (795)
......+||++|++.|++.+. .+ ..+||++|..... .....+.++.+.+...
T Consensus 228 ~~~~i~~GG~~it~dIa~~l~----------i~-----------~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~~~- 285 (420)
T PRK09472 228 HTKVIPYAGNVVTSDIAYAFG----------TP-----------PSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRPP- 285 (420)
T ss_pred EEeeeechHHHHHHHHHHHhC----------cC-----------HHHHHHHHHhcceeccccCCCCceeEecCCCCCCC-
Confidence 222347899999988875441 11 4689999966432 1234566665443332
Q ss_pred EEEeeHHHHHHHHHHHHHHHHHHHHH-------HHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCC-ccCC----
Q 003784 331 RSSITRQKFEELCEDLWERSLVPLRE-------VLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRT-ELDR---- 398 (795)
Q Consensus 331 ~~~itr~efe~l~~~~~~~i~~~i~~-------~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~-~i~~---- 398 (795)
..++|.+|.+++.+-++++...+++ .|..+++....++.|+|+||+|++|.|++.+++.|+.. .+..
T Consensus 286 -~~i~~~~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~ 364 (420)
T PRK09472 286 -RSLQRQTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNI 364 (420)
T ss_pred -eEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCccc
Confidence 3899999999999966666666654 55667777778999999999999999999999999863 1111
Q ss_pred ------CCCcchhhHhhHHHHHHH
Q 003784 399 ------HLDADEAIVLGASLLAAN 416 (795)
Q Consensus 399 ------~~n~deaVa~GAa~~aa~ 416 (795)
..+|..|+|.|.++++..
T Consensus 365 ~g~~~~~~~P~~ata~Gl~~~~~~ 388 (420)
T PRK09472 365 TGLTDYAQEPYYSTAVGLLHYGKE 388 (420)
T ss_pred CCChhhcCCcHHHHHHHHHHHhhh
Confidence 247999999999999774
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.68 E-value=1.5e-14 Score=157.72 Aligned_cols=207 Identities=24% Similarity=0.273 Sum_probs=162.5
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeecccccc
Q 003784 164 FVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVY 243 (795)
Q Consensus 164 ~VItVPa~f~~~qR~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~ 243 (795)
.++|+|..+ -+.+.+|++.+|+++..++-+|-|+|.+..... .+.-.++++|+||||||+++++
T Consensus 158 hvit~~~~~----~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~d---EkelGv~lIDiG~GTTdIai~~--------- 221 (418)
T COG0849 158 HVITGPKNI----LENLEKCVERAGLKVDNIVLEPLASALAVLTED---EKELGVALIDIGGGTTDIAIYK--------- 221 (418)
T ss_pred EEEEcchHH----HHHHHHHHHHhCCCeeeEEEehhhhhhhccCcc---cHhcCeEEEEeCCCcEEEEEEE---------
Confidence 466777554 455888999999999999999999998765443 3457799999999999999994
Q ss_pred CeeeecCeEEEEEeccCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCC------Cce
Q 003784 244 GKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSAN------TMA 317 (795)
Q Consensus 244 ~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~------~~~ 317 (795)
.+.+. +.+.-.+||++++..|+.-|.-. +..||+.|...... .+.
T Consensus 222 -----~G~l~---~~~~ipvgG~~vT~DIa~~l~t~---------------------~~~AE~iK~~~g~a~~~~~~~~~ 272 (418)
T COG0849 222 -----NGALR---YTGVIPVGGDHVTKDIAKGLKTP---------------------FEEAERIKIKYGSALISLADDEE 272 (418)
T ss_pred -----CCEEE---EEeeEeeCccHHHHHHHHHhCCC---------------------HHHHHHHHHHcCccccCcCCCcc
Confidence 44332 22334789999999998765322 36788888876332 344
Q ss_pred eEEEeecccCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCC-cc
Q 003784 318 PISVESLYVDIDFRSSITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRT-EL 396 (795)
Q Consensus 318 ~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~-~i 396 (795)
.+.++...++. ...+||.++.+++++-+.++..+++..|++.++...-...|+|+||++.+|.+.+..++.|+.. ++
T Consensus 273 ~i~v~~vg~~~--~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRi 350 (418)
T COG0849 273 TIEVPSVGSDI--PRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRL 350 (418)
T ss_pred eEecccCCCcc--cchhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEe
Confidence 56777655544 5689999999999999999999999999999998677789999999999999999999999863 22
Q ss_pred CC----------CCCcchhhHhhHHHHHHHh
Q 003784 397 DR----------HLDADEAIVLGASLLAANL 417 (795)
Q Consensus 397 ~~----------~~n~deaVa~GAa~~aa~l 417 (795)
.. ..+|..+.|.|..++++..
T Consensus 351 g~P~~~~Gl~d~~~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 351 GVPLNIVGLTDIARNPAFSTAVGLLLYGALM 381 (418)
T ss_pred CCCccccCchhhccCchhhhhHHHHHHHhhc
Confidence 22 2357889999999998864
No 33
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.60 E-value=1.4e-14 Score=160.64 Aligned_cols=238 Identities=16% Similarity=0.142 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHHHH-HHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEE
Q 003784 140 ELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQA-AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHV 218 (795)
Q Consensus 140 el~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~A-a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~v 218 (795)
+.+..+++++...... ....-..+++++|..++..+|+.+.+. .+..|++.+.++++|.+|+++++. .+-
T Consensus 75 ~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~--------~~~ 145 (371)
T cd00012 75 DDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGR--------TTG 145 (371)
T ss_pred HHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCC--------CeE
Confidence 3445666666543211 111235699999999998888888775 677899999999999999988753 568
Q ss_pred EEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHH
Q 003784 219 VFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMA 298 (795)
Q Consensus 219 lV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 298 (795)
+|+|+|+++|+++.+. +|.. +........+||.++|+.|.+++..... ..+..
T Consensus 146 lVVDiG~~~t~i~pv~--------------~G~~-~~~~~~~~~~GG~~l~~~l~~~l~~~~~-----~~~~~------- 198 (371)
T cd00012 146 LVVDSGDGVTHVVPVY--------------DGYV-LPHAIKRLDLAGRDLTRYLKELLRERGY-----ELNSS------- 198 (371)
T ss_pred EEEECCCCeeEEEEEE--------------CCEE-chhhheeccccHHHHHHHHHHHHHhcCC-----Cccch-------
Confidence 9999999999998883 3322 2222334489999999999998865321 11111
Q ss_pred HHHHHHHHHhhhccCCCc---e----------e-EEEeecccCcceEEEeeHHHHHHHHHHHHH---------HHHHHHH
Q 003784 299 KLKKQVKRTKEILSANTM---A----------P-ISVESLYVDIDFRSSITRQKFEELCEDLWE---------RSLVPLR 355 (795)
Q Consensus 299 ~L~~~~e~~K~~LS~~~~---~----------~-i~i~~l~~~~d~~~~itr~efe~l~~~~~~---------~i~~~i~ 355 (795)
.-...++..|+.+..-.. . . ...-.+.++ ..+.++.+.| .+++.+++ .+.+.|.
T Consensus 199 ~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~--~~i~~~~er~-~~~E~lF~p~~~~~~~~~i~~~i~ 275 (371)
T cd00012 199 DEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDG--RTIKVGNERF-RAPEILFNPSLIGSEQVGISEAIY 275 (371)
T ss_pred hHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCC--eEEEEChHHh-hChHhcCChhhcCCCcCCHHHHHH
Confidence 112345566665432110 0 0 000111222 2345665544 22333333 6788888
Q ss_pred HHHHHCCC--CCCCccEEEEecCccCCHHHHHHHHHHhCCC---------ccCCCCCcchhhHhhHHHHHHH
Q 003784 356 EVLNYSGL--KMDEIYAVELIGGGTRVPKLQAKLQEYLGRT---------ELDRHLDADEAIVLGASLLAAN 416 (795)
Q Consensus 356 ~~l~~a~~--~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~---------~i~~~~n~deaVa~GAa~~aa~ 416 (795)
+++..... ...-++.|+|+||+|++|.+.++|.+.+... .+....+|..++-+||+++|..
T Consensus 276 ~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 276 SSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 88877643 2334678999999999999999998877521 2334567889999999999865
No 34
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.56 E-value=7.8e-13 Score=143.99 Aligned_cols=207 Identities=14% Similarity=0.194 Sum_probs=137.2
Q ss_pred EEEecCCCCCHHHH-HHHHHHHHHh------C------CceeeecchhHHHHHHhhhcCCC-----CCCCcEEEEEEecC
Q 003784 164 FVISVPPYFGQAER-KGLMQAAELA------G------MNVLSLVNEHSGAALQYGIDKDF-----SNESRHVVFYDMGA 225 (795)
Q Consensus 164 ~VItVPa~f~~~qR-~al~~Aa~~A------G------l~~~~li~Ep~AAAl~y~~~~~~-----~~~~~~vlV~D~Gg 225 (795)
++...|..+-..++ +.+++..... | +..+.++.+|.+|.+.+.....- ......++|+|+|+
T Consensus 115 l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~ 194 (344)
T PRK13917 115 VATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGS 194 (344)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCC
Confidence 34589998854453 6676554321 1 12367899999998887664310 11335789999999
Q ss_pred ccceeeEEEEeeccccccCeeeecCeEEEEEeccCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHH
Q 003784 226 TTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVK 305 (795)
Q Consensus 226 gT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e 305 (795)
||||+++++ .+.+. ....+....|..++.+.|.+++.+.. ++..+ +.. ++.+..+
T Consensus 195 ~TtD~~v~~--------------~~~~~-~~~s~s~~~G~~~~~~~I~~~i~~~~-----~~~~~--~~~---~ie~~l~ 249 (344)
T PRK13917 195 GTTDLDTIQ--------------NLKRV-EEESFVIPKGTIDVYKRIASHISKKE-----EGASI--TPY---MLEKGLE 249 (344)
T ss_pred CcEEEEEEe--------------CcEEc-ccccccccchHHHHHHHHHHHHHhhC-----CCCCC--CHH---HHHHHHH
Confidence 999999983 22222 23334457899999999988886443 23222 221 2222211
Q ss_pred HHhhhccCCCceeEEEeecccCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHH
Q 003784 306 RTKEILSANTMAPISVESLYVDIDFRSSITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQA 385 (795)
Q Consensus 306 ~~K~~LS~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~ 385 (795)
. . .+.+ ..+.. +.+ ++++.++++++++++...+...+.. ..+++.|+|+||++++ +++
T Consensus 250 ~-------g---~i~~---~~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~ 307 (344)
T PRK13917 250 Y-------G---ACKL---NQKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFD 307 (344)
T ss_pred c-------C---cEEe---CCCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHH
Confidence 1 1 1111 11111 122 5678889999999999888888853 3488999999999987 889
Q ss_pred HHHHHhCCCccCCCCCcchhhHhhHHHHHHHhcC
Q 003784 386 KLQEYLGRTELDRHLDADEAIVLGASLLAANLSD 419 (795)
Q Consensus 386 ~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~ls~ 419 (795)
.|++.|+. +....||..|-|+|...+|..+.+
T Consensus 308 ~lk~~f~~--~~~~~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 308 SLSHWYSD--VEKADESQFANVRGYYKYGELLKN 339 (344)
T ss_pred HHHHHcCC--eEEcCChHHHHHHHHHHHHHHHhc
Confidence 99999985 456679999999999999886543
No 35
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.52 E-value=1.9e-13 Score=151.75 Aligned_cols=238 Identities=15% Similarity=0.148 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHHHHH-HHhCCceeeecchhHHHHHHhhhcCCCCCCCcEE
Q 003784 140 ELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAA-ELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHV 218 (795)
Q Consensus 140 el~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~v 218 (795)
+.+..+++++....-. ....-..+++++|...+..+|+.+.+.+ +..|++.+.++++|.+|+++++ ..+-
T Consensus 75 ~~~e~i~~~~~~~~l~-~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g--------~~~~ 145 (373)
T smart00268 75 DDMEKIWDYTFFNELR-VEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASG--------RTTG 145 (373)
T ss_pred HHHHHHHHHHHhhhcC-CCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC--------CCEE
Confidence 4566677776653111 1112246899999999999999998886 5679999999999999998875 3578
Q ss_pred EEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHH
Q 003784 219 VFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMA 298 (795)
Q Consensus 219 lV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 298 (795)
+|+|+|+++|+++.+. +|.. +........+||.++|+.|.+++...- ......
T Consensus 146 lVVDiG~~~t~v~pv~--------------~G~~-~~~~~~~~~~GG~~l~~~l~~~l~~~~-----~~~~~~------- 198 (373)
T smart00268 146 LVIDSGDGVTHVVPVV--------------DGYV-LPHAIKRIDIAGRDLTDYLKELLSERG-----YQFNSS------- 198 (373)
T ss_pred EEEecCCCcceEEEEE--------------CCEE-chhhheeccCcHHHHHHHHHHHHHhcC-----CCCCcH-------
Confidence 9999999999999883 2321 222223347999999999998886511 111111
Q ss_pred HHHHHHHHHhhhccCCC-----------------ceeEEEeecccCcceEEEeeHHHH---HHHHHHH-----HHHHHHH
Q 003784 299 KLKKQVKRTKEILSANT-----------------MAPISVESLYVDIDFRSSITRQKF---EELCEDL-----WERSLVP 353 (795)
Q Consensus 299 ~L~~~~e~~K~~LS~~~-----------------~~~i~i~~l~~~~d~~~~itr~ef---e~l~~~~-----~~~i~~~ 353 (795)
.-...++.+|+.+..-. ...... .+.++..+ .+..+.| |.++.|. ...+.++
T Consensus 199 ~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~lpdg~~~--~~~~er~~~~E~lf~p~~~~~~~~~i~~~ 275 (373)
T smart00268 199 AEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTY-ELPDGNTI--KVGNERFRIPEILFKPELIGLEQKGIHEL 275 (373)
T ss_pred HHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeE-ECCCCCEE--EEChHHeeCchhcCCchhcCCCcCCHHHH
Confidence 11233445555442110 000011 12233333 3333332 1222321 2367788
Q ss_pred HHHHHHHCCCC--CCCccEEEEecCccCCHHHHHHHHHHhCCC-------ccCCCCCcchhhHhhHHHHHHH
Q 003784 354 LREVLNYSGLK--MDEIYAVELIGGGTRVPKLQAKLQEYLGRT-------ELDRHLDADEAIVLGASLLAAN 416 (795)
Q Consensus 354 i~~~l~~a~~~--~~~i~~V~LvGG~sriP~v~~~l~~~f~~~-------~i~~~~n~deaVa~GAa~~aa~ 416 (795)
|.++|..+... ..-.+.|+|+||+|++|.+.++|.+.+... .+..+.++..++=.||+++|..
T Consensus 276 i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 276 VYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred HHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccCc
Confidence 88888765422 222366999999999999999998776321 2333445566777788877654
No 36
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.47 E-value=1.8e-13 Score=129.42 Aligned_cols=194 Identities=18% Similarity=0.239 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEe
Q 003784 144 MVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDM 223 (795)
Q Consensus 144 ~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~ 223 (795)
.+.+.+++.++++++..+....=++|+.--+...+...+..+.||++++..++||||||.-.++. .-.|+|+
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~--------dg~VVDi 147 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLD--------DGGVVDI 147 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccC--------CCcEEEe
Confidence 46788899999999999999999999998777778888889999999999999999998544333 2378999
Q ss_pred cCccceeeEEEEeeccccccCeeeecCeEEEEEeccCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 003784 224 GATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQ 303 (795)
Q Consensus 224 GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ 303 (795)
|||||-+|+++ .|. |+. ..|...||..+...|+-+ ++++ +++
T Consensus 148 GGGTTGIsi~k--------------kGk--Viy-~ADEpTGGtHmtLvlAG~----------ygi~-----------~Ee 189 (277)
T COG4820 148 GGGTTGISIVK--------------KGK--VIY-SADEPTGGTHMTLVLAGN----------YGIS-----------LEE 189 (277)
T ss_pred CCCcceeEEEE--------------cCc--EEE-eccCCCCceeEEEEEecc----------cCcC-----------HhH
Confidence 99999999994 333 222 345577888887665533 3443 355
Q ss_pred HHHHhhhccCCCceeEEEeecccCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHH
Q 003784 304 VKRTKEILSANTMAPISVESLYVDIDFRSSITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKL 383 (795)
Q Consensus 304 ~e~~K~~LS~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v 383 (795)
||..|..--.. +|.=..+.|+++++.+.+...++..++ ..+.|+||+|.-|.+
T Consensus 190 AE~~Kr~~k~~----------------------~Eif~~v~PV~eKMAeIv~~hie~~~i-----~dl~lvGGac~~~g~ 242 (277)
T COG4820 190 AEQYKRGHKKG----------------------EEIFPVVKPVYEKMAEIVARHIEGQGI-----TDLWLVGGACMQPGV 242 (277)
T ss_pred HHHhhhccccc----------------------hhcccchhHHHHHHHHHHHHHhccCCC-----cceEEecccccCccH
Confidence 66665431111 111123679999999999999987654 469999999999999
Q ss_pred HHHHHHHhCCCccCCCCCcchhhHhhHH
Q 003784 384 QAKLQEYLGRTELDRHLDADEAIVLGAS 411 (795)
Q Consensus 384 ~~~l~~~f~~~~i~~~~n~deaVa~GAa 411 (795)
.+..++.|+- ++..+..|....-+|-|
T Consensus 243 e~~Fe~~l~l-~v~~P~~p~y~TPLgIA 269 (277)
T COG4820 243 EELFEKQLAL-QVHLPQHPLYMTPLGIA 269 (277)
T ss_pred HHHHHHHhcc-ccccCCCcceechhhhh
Confidence 9999999964 66666666555555555
No 37
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.37 E-value=6.2e-11 Score=133.12 Aligned_cols=226 Identities=11% Similarity=0.070 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHHHHH-HHhCCceeeecchhHHHHHHhhhcCCCC--CCCc
Q 003784 140 ELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAA-ELAGMNVLSLVNEHSGAALQYGIDKDFS--NESR 216 (795)
Q Consensus 140 el~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~--~~~~ 216 (795)
+.+..+++|+..... .....-..+++|.|..++..+|+.+.+.+ +..|++-+.+..+|.+|++++....... .+..
T Consensus 82 d~~e~l~~~~~~~~L-~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~ 160 (414)
T PTZ00280 82 DLMEKFWEQCIFKYL-RCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTL 160 (414)
T ss_pred HHHHHHHHHHHHHhh-ccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCce
Confidence 445566666543111 11111235899999999999999998875 4458888999999999998763322100 0234
Q ss_pred EEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHH
Q 003784 217 HVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKA 296 (795)
Q Consensus 217 ~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~ 296 (795)
+-||+|+|+|+|+++.+- .|.. +........+||.++++.|.++|.+.. + .+...
T Consensus 161 tglVVDiG~~~T~i~PV~--------------~G~~-l~~~~~~~~~GG~~lt~~L~~lL~~~~-----~--~~~~~--- 215 (414)
T PTZ00280 161 TGTVIDSGDGVTHVIPVV--------------DGYV-IGSSIKHIPLAGRDITNFIQQMLRERG-----E--PIPAE--- 215 (414)
T ss_pred eEEEEECCCCceEEEEEE--------------CCEE-cccceEEecCcHHHHHHHHHHHHHHcC-----C--CCCcH---
Confidence 569999999999998772 2322 111112337999999999999886431 1 12111
Q ss_pred HHHHHHHHHHHhhhccCCC-----------------ceeEEEeecccCcceEEEeeHHHHH---HHHHHHH------HHH
Q 003784 297 MAKLKKQVKRTKEILSANT-----------------MAPISVESLYVDIDFRSSITRQKFE---ELCEDLW------ERS 350 (795)
Q Consensus 297 ~~~L~~~~e~~K~~LS~~~-----------------~~~i~i~~l~~~~d~~~~itr~efe---~l~~~~~------~~i 350 (795)
..+..++.+|+.++... ...+..+...++....+.|..+.|. -++.|-+ ..+
T Consensus 216 --~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl 293 (414)
T PTZ00280 216 --DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPL 293 (414)
T ss_pred --HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCH
Confidence 01233555666553211 0112222222234456778877774 2444422 246
Q ss_pred HHHHHHHHHHCCCC--CCCccEEEEecCccCCHHHHHHHHHHhCC
Q 003784 351 LVPLREVLNYSGLK--MDEIYAVELIGGGTRVPKLQAKLQEYLGR 393 (795)
Q Consensus 351 ~~~i~~~l~~a~~~--~~~i~~V~LvGG~sriP~v~~~l~~~f~~ 393 (795)
.++|.++|.++... ..-.+.|+|+||+|.+|.+.++|++-+..
T Consensus 294 ~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~~ 338 (414)
T PTZ00280 294 PEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRK 338 (414)
T ss_pred HHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHHH
Confidence 77788888776432 22346799999999999999999887753
No 38
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.30 E-value=1.8e-10 Score=124.76 Aligned_cols=208 Identities=13% Similarity=0.161 Sum_probs=128.5
Q ss_pred CCCcEEEecCCCCCHHHHHHHHHHHHHh---------CCceeeecchhHHHHHHhhhcCC-CCCCCcEEEEEEecCccce
Q 003784 160 AVKDFVISVPPYFGQAERKGLMQAAELA---------GMNVLSLVNEHSGAALQYGIDKD-FSNESRHVVFYDMGATTTY 229 (795)
Q Consensus 160 ~~~~~VItVPa~f~~~qR~al~~Aa~~A---------Gl~~~~li~Ep~AAAl~y~~~~~-~~~~~~~vlV~D~GggT~d 229 (795)
.+..+|+..|..+...||+.+++...-. -+..+.+++||.+|.+.|..... .......++|+|+|++|||
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 3557999999999999999998876531 22347899999999888866431 1124567899999999999
Q ss_pred eeEEEEeeccccccCeeeecCeEEEEEeccCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhh
Q 003784 230 AALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKE 309 (795)
Q Consensus 230 vsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 309 (795)
+.+++ ++.+ +....+....|-.++-+.|.+.+.+++ +.+.......+. .+.+.-|.
T Consensus 181 ~~~~~--------------~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~------g~~~~~~~~~i~---~~l~~g~~ 236 (320)
T TIGR03739 181 WLVAR--------------GMRL-VQKRSGSVNGGMSDIYRLLAAEISKDI------GTPAYRDIDRID---LALRTGKQ 236 (320)
T ss_pred eehcc--------------CCEE-cccccCCchhHHHHHHHHHHHHHHhhc------CCCCccCHHHHH---HHHHhCCc
Confidence 98872 2333 334445557898888888888777664 322111211111 11111110
Q ss_pred hccCCCceeEEEeecccCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHH
Q 003784 310 ILSANTMAPISVESLYVDIDFRSSITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQE 389 (795)
Q Consensus 310 ~LS~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~ 389 (795)
+.+ .+.. +.|+ +.++ .....++++..-+...+ + ...+++.|+|+||++. .+++.|++
T Consensus 237 ---------~~~----~gk~--~di~-~~~~-~~~~~~~~~v~~i~~~~---~-~~~~~~~Iil~GGGa~--ll~~~l~~ 293 (320)
T TIGR03739 237 ---------PRI----YQKP--VDIK-RCLE-LAETVAQQAVSTMMTWI---G-APESIQNIVLVGGGAF--LFKKAVKA 293 (320)
T ss_pred ---------eee----ccee--cCch-HHHH-HHHHHHHHHHHHHHHhc---c-cCCcccEEEEeCCcHH--HHHHHHHH
Confidence 001 1111 1222 1122 23333333333333333 2 1246889999999987 66899999
Q ss_pred HhCCCccCCCCCcchhhHhhHHHHH
Q 003784 390 YLGRTELDRHLDADEAIVLGASLLA 414 (795)
Q Consensus 390 ~f~~~~i~~~~n~deaVa~GAa~~a 414 (795)
.|+...+....||..|.|+|-..+|
T Consensus 294 ~f~~~~i~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 294 AFPKHRIVEVDEPMFANVRGFQIAG 318 (320)
T ss_pred HCCCCeeEecCCcHHHHHHHHHHhh
Confidence 9987555556789999999987665
No 39
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.29 E-value=6.8e-11 Score=132.41 Aligned_cols=312 Identities=16% Similarity=0.188 Sum_probs=176.0
Q ss_pred CcEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceeEEEEeCC-----cEEEcHhHHHHHhhCcchhhhhhhhhc
Q 003784 24 SAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHES-----TRLLGEEASGIIARYPHRVYSQLRDMI 98 (795)
Q Consensus 24 ~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~v~~~~~-----~~~~G~~A~~~~~~~p~~~~~~~K~ll 98 (795)
..+|-||+|+.++++++. .+. .|- ..+||++..... ...+|..+... .+.
T Consensus 4 ~~~vViD~Gs~~~k~G~a--ge~-~P~---------~v~ps~~~~~~~~~~~~~~~~g~~~~~~---~~~---------- 58 (393)
T PF00022_consen 4 NKPVVIDNGSSTIKAGFA--GED-LPR---------VVIPSVVGRPRDKNSSNDYYVGDEALSP---RSN---------- 58 (393)
T ss_dssp SSEEEEEECSSEEEEEET--TSS-S-S---------EEEESEEEEESSSSSSSSCEETHHHHHT---GTG----------
T ss_pred CCEEEEECCCceEEEEEC--CCC-CCC---------CcCCCccccccccccceeEEeecccccc---hhh----------
Confidence 468899999999999997 332 332 236888776432 35677763220 000
Q ss_pred CCCChhhHhhHhhcCCCceEEECCCCcEEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHH
Q 003784 99 GKPFKQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERK 178 (795)
Q Consensus 99 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~ 178 (795)
+.+ ...+.+|.... -+.+..+++++..... .....-..++++.|..++..+|+
T Consensus 59 -----------------~~~--------~~p~~~g~i~~-~~~~e~i~~~~~~~~l-~~~~~~~~vll~~~~~~~~~~r~ 111 (393)
T PF00022_consen 59 -----------------LEL--------RSPIENGVIVD-WDALEEIWDYIFSNLL-KVDPSDHPVLLTEPPFNPRSQRE 111 (393)
T ss_dssp -----------------EEE--------EESEETTEESS-HHHHHHHHHHHHHTTT--SSGGGSEEEEEESTT--HHHHH
T ss_pred -----------------eee--------eeecccccccc-cccccccccccccccc-ccccccceeeeeccccCCchhhh
Confidence 000 00011222122 2345556666654321 11122346999999999999999
Q ss_pred HHHHHH-HHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEe
Q 003784 179 GLMQAA-ELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDV 257 (795)
Q Consensus 179 al~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~ 257 (795)
.+.+.+ +..|++.+.+++++.+|+++++.. +-||+|+|.+.|.++-+- +|.. +...
T Consensus 112 ~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~--------tglVVD~G~~~t~v~pV~--------------dG~~-~~~~ 168 (393)
T PF00022_consen 112 KLAEILFEKFGVPSVYFIPSPLLALYASGRT--------TGLVVDIGYSSTSVVPVV--------------DGYV-LPHS 168 (393)
T ss_dssp HHHHHHHHTS--SEEEEEEHHHHHHHHTTBS--------SEEEEEESSS-EEEEEEE--------------TTEE--GGG
T ss_pred hhhhhhhcccccceeeeeecccccccccccc--------cccccccceeeeeeeeee--------------eccc-cccc
Confidence 887774 466889999999999999877543 459999999999988772 2321 1111
Q ss_pred ccCCCCchHHHHHHHHHHHHHH-HhhhcCCCCC---CC-CCHHHHHHHHHHHHHHhhhc---c------------CCCce
Q 003784 258 RWDAELGGQNMELRLVEYFADE-FNKQVGNGVD---VR-KSPKAMAKLKKQVKRTKEIL---S------------ANTMA 317 (795)
Q Consensus 258 ~~~~~lGG~~~D~~l~~~l~~~-~~~~~~~~~~---~~-~~~~~~~~L~~~~e~~K~~L---S------------~~~~~ 317 (795)
.....+||.++++.|.+.+..+ +.-...+... .. ........-...++.+|+.+ + .....
T Consensus 169 ~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~ 248 (393)
T PF00022_consen 169 IKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEK 248 (393)
T ss_dssp BEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTE
T ss_pred cccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccce
Confidence 1223799999999999998874 1110000000 00 00100111122233333332 1 11122
Q ss_pred eEEEeecccCcceEEEeeHHHHHHHHHHHHH----------------HHHHHHHHHHHHCCCCC--CCccEEEEecCccC
Q 003784 318 PISVESLYVDIDFRSSITRQKFEELCEDLWE----------------RSLVPLREVLNYSGLKM--DEIYAVELIGGGTR 379 (795)
Q Consensus 318 ~i~i~~l~~~~d~~~~itr~efe~l~~~~~~----------------~i~~~i~~~l~~a~~~~--~~i~~V~LvGG~sr 379 (795)
.+.+ .++. .+.+..+.| .+.+.+|+ .+.++|.+++....... .-...|+|+||+|+
T Consensus 249 ~~~l---Pdg~--~i~~~~er~-~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~ 322 (393)
T PF00022_consen 249 SYEL---PDGQ--TIILGKERF-RIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSL 322 (393)
T ss_dssp EEE----TTSS--EEEESTHHH-HHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGG
T ss_pred eccc---cccc--ccccccccc-cccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEeccccc
Confidence 2222 2443 446665555 22333332 57788888888765432 12468999999999
Q ss_pred CHHHHHHHHHHhCC-------CccCCCC-CcchhhHhhHHHHHHH
Q 003784 380 VPKLQAKLQEYLGR-------TELDRHL-DADEAIVLGASLLAAN 416 (795)
Q Consensus 380 iP~v~~~l~~~f~~-------~~i~~~~-n~deaVa~GAa~~aa~ 416 (795)
+|.+.++|.+.+.. -++.... ++..++=.||+++|..
T Consensus 323 i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl 367 (393)
T PF00022_consen 323 IPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASL 367 (393)
T ss_dssp STTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTS
T ss_pred ccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeecc
Confidence 99999999876533 1333444 7889999999999875
No 40
>PTZ00452 actin; Provisional
Probab=99.14 E-value=2.7e-09 Score=117.91 Aligned_cols=235 Identities=17% Similarity=0.129 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHHHH-HHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEE
Q 003784 141 LLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQA-AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVV 219 (795)
Q Consensus 141 l~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~A-a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vl 219 (795)
.+..+++|+..... .....-..+++|-|...+..+|+.|.+. .+..+.+.+.+.+.+.+++++++. .+-|
T Consensus 81 ~~e~iw~~~f~~~l-~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~--------~tgl 151 (375)
T PTZ00452 81 DIEIIWHHAFYNEL-CMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK--------TIGL 151 (375)
T ss_pred HHHHHHHHHHHhhc-CCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCC--------ceee
Confidence 34456666543211 1222234689999999999999998776 455688888889999998877542 3569
Q ss_pred EEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 003784 220 FYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAK 299 (795)
Q Consensus 220 V~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 299 (795)
|+|+|.|.+.++-+- +|.. +........+||.++++.|.+.|... +..+.... .
T Consensus 152 VVDiG~~~t~v~PV~--------------dG~~-l~~~~~r~~~gG~~lt~~L~~lL~~~-------~~~~~~~~-~--- 205 (375)
T PTZ00452 152 VVDSGEGVTHCVPVF--------------EGHQ-IPQAITKINLAGRLCTDYLTQILQEL-------GYSLTEPH-Q--- 205 (375)
T ss_pred eecCCCCcceEEEEE--------------CCEE-eccceEEeeccchHHHHHHHHHHHhc-------CCCCCCHH-H---
Confidence 999999999987762 2322 11222233799999999998877432 11121111 0
Q ss_pred HHHHHHHHhhhccCCC----------------ceeEEEeecccCcceEEEeeHHHH---HHHHHHHH-----HHHHHHHH
Q 003784 300 LKKQVKRTKEILSANT----------------MAPISVESLYVDIDFRSSITRQKF---EELCEDLW-----ERSLVPLR 355 (795)
Q Consensus 300 L~~~~e~~K~~LS~~~----------------~~~i~i~~l~~~~d~~~~itr~ef---e~l~~~~~-----~~i~~~i~ 355 (795)
+..++..|+.++... ..... |-++. .+.+..+.| |-+++|.+ ..+.++|.
T Consensus 206 -~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~---LPDg~--~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~ 279 (375)
T PTZ00452 206 -RIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYK---LPDGN--ILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAY 279 (375)
T ss_pred -HHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEE---CCCCC--EEEeehHHhcCcccccChhhcCCCCCChhHHHH
Confidence 112344444443111 01111 22333 346666666 22344422 24667777
Q ss_pred HHHHHCCCC--CCCccEEEEecCccCCHHHHHHHHHHhCC----C---ccCCCCCcchhhHhhHHHHHHH
Q 003784 356 EVLNYSGLK--MDEIYAVELIGGGTRVPKLQAKLQEYLGR----T---ELDRHLDADEAIVLGASLLAAN 416 (795)
Q Consensus 356 ~~l~~a~~~--~~~i~~V~LvGG~sriP~v~~~l~~~f~~----~---~i~~~~n~deaVa~GAa~~aa~ 416 (795)
+++..+... ..-.+.|+|+||+|.+|.+.++|.+-+.. . ++..+.+...++=.|++++|..
T Consensus 280 ~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilasl 349 (375)
T PTZ00452 280 SSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCTL 349 (375)
T ss_pred HHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcCc
Confidence 777766432 23346899999999999999998866532 1 2333445556777888888753
No 41
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.14 E-value=2.8e-08 Score=109.39 Aligned_cols=161 Identities=16% Similarity=0.217 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHhCCceeeecchhHHHHHHhhh-cCCC--CCCCc-EEEEEEecCccceeeEEEEeeccccccCeeeec
Q 003784 174 QAERKGLMQAAELAGMNVLSLVNEHSGAALQYGI-DKDF--SNESR-HVVFYDMGATTTYAALVYFSAYNAKVYGKTVSV 249 (795)
Q Consensus 174 ~~qR~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~-~~~~--~~~~~-~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~ 249 (795)
....+.+.++++.||+++..+.-+|.|.+-.+.. ...+ ..... .++++|+|+++|+++++. +
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~--------------~ 207 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLH--------------P 207 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEE--------------C
Confidence 5567888999999999999998899887655531 1101 11223 499999999999999993 3
Q ss_pred CeEEEEEeccCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccCcc
Q 003784 250 NQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDID 329 (795)
Q Consensus 250 ~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~l~~~~d 329 (795)
+.+.. .....+||.+|++.|.+.+ +.+ ...||+.|..-.... ..
T Consensus 208 g~~~~---~r~i~~G~~~i~~~i~~~~----------~~~-----------~~~Ae~~k~~~~~~~-----------~~- 251 (348)
T TIGR01175 208 GRMLF---TREVPFGTRQLTSELSRAY----------GLN-----------PEEAGEAKQQGGLPL-----------LY- 251 (348)
T ss_pred CeEEE---EEEeechHHHHHHHHHHHc----------CCC-----------HHHHHHHHhcCCCCC-----------ch-
Confidence 33222 2234689999998886432 222 356777776422111 00
Q ss_pred eEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCccEEEEecCccCCHHHHHHHHHHhCC
Q 003784 330 FRSSITRQKFEELCEDLWERSLVPLREVLNYS--GLKMDEIYAVELIGGGTRVPKLQAKLQEYLGR 393 (795)
Q Consensus 330 ~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a--~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~ 393 (795)
-.+++++.++++..-|.+.|+-. ......++.|+|+||+++++.+.+.+++.||-
T Consensus 252 ---------~~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~ 308 (348)
T TIGR01175 252 ---------DPEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGL 308 (348)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCC
Confidence 02345555666666666666432 22344689999999999999999999999985
No 42
>PTZ00004 actin-2; Provisional
Probab=99.10 E-value=1.9e-09 Score=119.56 Aligned_cols=235 Identities=14% Similarity=0.138 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHHHH-HHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEE
Q 003784 140 ELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQA-AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHV 218 (795)
Q Consensus 140 el~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~A-a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~v 218 (795)
+.+..++.|+...-- .....-..+++|-|..++..+|+.+.+. .+..|++.+.++.+|.+|+++++. .+-
T Consensus 81 d~~e~i~~~~~~~~l-~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~--------~tg 151 (378)
T PTZ00004 81 DDMEKIWHHTFYNEL-RVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR--------TTG 151 (378)
T ss_pred HHHHHHHHHHHHhhc-ccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC--------ceE
Confidence 345556666432110 0112234578999999999999887776 456799999999999999977642 356
Q ss_pred EEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHH
Q 003784 219 VFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMA 298 (795)
Q Consensus 219 lV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 298 (795)
+|+|+|++.|+++-+- +|.. +.......++||.++++.|.+.+... +..+... ..
T Consensus 152 lVVDiG~~~t~v~pV~--------------dG~~-l~~~~~~~~~GG~~lt~~L~~lL~~~-------~~~~~~~--~~- 206 (378)
T PTZ00004 152 IVLDSGDGVSHTVPIY--------------EGYS-LPHAIHRLDVAGRDLTEYMMKILHER-------GTTFTTT--AE- 206 (378)
T ss_pred EEEECCCCcEEEEEEE--------------CCEE-eecceeeecccHHHHHHHHHHHHHhc-------CCCCCcH--HH-
Confidence 9999999999988772 2322 22222334799999999999987532 1111111 11
Q ss_pred HHHHHHHHHhhhccCCC-----------------ceeEEEeecccCcceEEEeeHHHHH---HHHHHH------HHHHHH
Q 003784 299 KLKKQVKRTKEILSANT-----------------MAPISVESLYVDIDFRSSITRQKFE---ELCEDL------WERSLV 352 (795)
Q Consensus 299 ~L~~~~e~~K~~LS~~~-----------------~~~i~i~~l~~~~d~~~~itr~efe---~l~~~~------~~~i~~ 352 (795)
...++..|+.+.... ...+. |.++. .+.|..+.|. -++.|- ...+.+
T Consensus 207 --~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~---lPdg~--~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~ 279 (378)
T PTZ00004 207 --KEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYE---LPDGT--IITVGSERFRCPEALFQPSLIGKEEPPGIHE 279 (378)
T ss_pred --HHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEE---CCCCC--EEEEcHHHeeCcccccChhhcCccccCChHH
Confidence 122344454432110 11111 22333 2355555542 344542 235667
Q ss_pred HHHHHHHHCCCC--CCCccEEEEecCccCCHHHHHHHHHHhCC----C---ccCCCCCcchhhHhhHHHHHH
Q 003784 353 PLREVLNYSGLK--MDEIYAVELIGGGTRVPKLQAKLQEYLGR----T---ELDRHLDADEAIVLGASLLAA 415 (795)
Q Consensus 353 ~i~~~l~~a~~~--~~~i~~V~LvGG~sriP~v~~~l~~~f~~----~---~i~~~~n~deaVa~GAa~~aa 415 (795)
+|.+++.++... ..-...|+|+||+|.+|.+.++|..-+.. . ++..+.++..++=+||++.|.
T Consensus 280 ~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 280 LTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred HHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 788888776432 22346799999999999999998876532 1 233344566777778887765
No 43
>PTZ00281 actin; Provisional
Probab=99.10 E-value=1.7e-09 Score=119.89 Aligned_cols=238 Identities=14% Similarity=0.156 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHHHH-HHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEE
Q 003784 141 LLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQA-AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVV 219 (795)
Q Consensus 141 l~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~A-a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vl 219 (795)
.+..+++|+....- .....-..+++|-|..++..+|+.+.+. .+..+++-+.+...|.+++++++. .+-+
T Consensus 82 ~~e~l~~~~f~~~l-~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~--------~tgl 152 (376)
T PTZ00281 82 DMEKIWHHTFYNEL-RVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--------TTGI 152 (376)
T ss_pred HHHHHHHHHHHhhc-cCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC--------ceEE
Confidence 44456666543110 1122234588899999999999999875 566788888999999999876642 3569
Q ss_pred EEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 003784 220 FYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAK 299 (795)
Q Consensus 220 V~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 299 (795)
|+|+|.+.|.++-+- +|. .+........+||.++++.|.+.|... +..+... .-
T Consensus 153 VVDiG~~~t~v~PV~--------------dG~-~~~~~~~~~~~GG~~lt~~L~~lL~~~-------~~~~~~~--~~-- 206 (376)
T PTZ00281 153 VMDSGDGVSHTVPIY--------------EGY-ALPHAILRLDLAGRDLTDYMMKILTER-------GYSFTTT--AE-- 206 (376)
T ss_pred EEECCCceEEEEEEE--------------ecc-cchhheeeccCcHHHHHHHHHHHHHhc-------CCCCCcH--HH--
Confidence 999999999987652 222 122222234799999999999877542 1111111 11
Q ss_pred HHHHHHHHhhhccCCC------------ceeEEEe-ecccCcceEEEeeHHHH---HHHHHHHH-----HHHHHHHHHHH
Q 003784 300 LKKQVKRTKEILSANT------------MAPISVE-SLYVDIDFRSSITRQKF---EELCEDLW-----ERSLVPLREVL 358 (795)
Q Consensus 300 L~~~~e~~K~~LS~~~------------~~~i~i~-~l~~~~d~~~~itr~ef---e~l~~~~~-----~~i~~~i~~~l 358 (795)
...++..|+.++... ....... .|-++. .+.|..+.| |-+++|.+ ..+.++|.+++
T Consensus 207 -~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~LPdg~--~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI 283 (376)
T PTZ00281 207 -REIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQ--VITIGNERFRCPEALFQPSFLGMESAGIHETTYNSI 283 (376)
T ss_pred -HHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEECCCCC--EEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHH
Confidence 123455565543211 0000001 122333 345655544 23444422 14667777777
Q ss_pred HHCCCC--CCCccEEEEecCccCCHHHHHHHHHHhCCC-------ccCCCCCcchhhHhhHHHHHHH
Q 003784 359 NYSGLK--MDEIYAVELIGGGTRVPKLQAKLQEYLGRT-------ELDRHLDADEAIVLGASLLAAN 416 (795)
Q Consensus 359 ~~a~~~--~~~i~~V~LvGG~sriP~v~~~l~~~f~~~-------~i~~~~n~deaVa~GAa~~aa~ 416 (795)
..+... ..-.+.|+|+||+|.+|.+.++|+.-+... ++..+.++..++=+||+++|..
T Consensus 284 ~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilasl 350 (376)
T PTZ00281 284 MKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASL 350 (376)
T ss_pred HhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccCc
Confidence 765432 223467999999999999999888665321 2334456677888888888763
No 44
>PTZ00466 actin-like protein; Provisional
Probab=99.06 E-value=5.1e-09 Score=115.88 Aligned_cols=236 Identities=12% Similarity=0.095 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHHHH-HHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEE
Q 003784 141 LLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQA-AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVV 219 (795)
Q Consensus 141 l~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~A-a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vl 219 (795)
.+..+++|+.+... ....-..+++|-|+.++..+|+.+.+. .+..|++.+.+.+.|.+|+++++. .+-+
T Consensus 88 ~~e~iw~~~f~~l~--v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~--------~tgl 157 (380)
T PTZ00466 88 DMENIWIHVYNSMK--INSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK--------TNGT 157 (380)
T ss_pred HHHHHHHHHHhhcc--cCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC--------ceEE
Confidence 45555555543211 111234588899999999999998766 455788888899999999977642 4679
Q ss_pred EEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 003784 220 FYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAK 299 (795)
Q Consensus 220 V~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 299 (795)
|+|+|.+.|.++-+- +|.. +........+||.++++.|.+.+.+. . +..+.. .
T Consensus 158 VVD~G~~~t~v~PV~--------------~G~~-~~~~~~~~~~GG~~lt~~L~~lL~~~---~--~~~~~~-------~ 210 (380)
T PTZ00466 158 VLDCGDGVCHCVSIY--------------EGYS-ITNTITRTDVAGRDITTYLGYLLRKN---G--HLFNTS-------A 210 (380)
T ss_pred EEeCCCCceEEEEEE--------------CCEE-eecceeEecCchhHHHHHHHHHHHhc---C--CCCCcH-------H
Confidence 999999999987662 2322 22222234799999999999877532 0 111111 1
Q ss_pred HHHHHHHHhhhccCC-------------CceeEEEeecccCcceEEEeeHHHH---HHHHHHHH-----HHHHHHHHHHH
Q 003784 300 LKKQVKRTKEILSAN-------------TMAPISVESLYVDIDFRSSITRQKF---EELCEDLW-----ERSLVPLREVL 358 (795)
Q Consensus 300 L~~~~e~~K~~LS~~-------------~~~~i~i~~l~~~~d~~~~itr~ef---e~l~~~~~-----~~i~~~i~~~l 358 (795)
-+..++..|+.+..- ....... .|.++. .+.|..+.| |-++.|-+ ..+.++|.+++
T Consensus 211 ~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y-~LPdg~--~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI 287 (380)
T PTZ00466 211 EMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPY-ILPDGS--QILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSI 287 (380)
T ss_pred HHHHHHHHHHhCeEecCChHHHHhhccccccceeE-ECCCCc--EEEEchHHhcCcccccCccccCCCCCCHHHHHHHHH
Confidence 122344455544211 0000111 122333 345666655 23344421 14567777777
Q ss_pred HHCCCC--CCCccEEEEecCccCCHHHHHHHHHHhCCC-------ccCCCCCcchhhHhhHHHHHHH
Q 003784 359 NYSGLK--MDEIYAVELIGGGTRVPKLQAKLQEYLGRT-------ELDRHLDADEAIVLGASLLAAN 416 (795)
Q Consensus 359 ~~a~~~--~~~i~~V~LvGG~sriP~v~~~l~~~f~~~-------~i~~~~n~deaVa~GAa~~aa~ 416 (795)
.++... ..-...|+|+||+|.+|.+.++|++-+... ++..+.++..++=+||+++|..
T Consensus 288 ~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilasl 354 (380)
T PTZ00466 288 TRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILASL 354 (380)
T ss_pred HhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcCc
Confidence 766432 223468999999999999999998766321 2333445666777888888763
No 45
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.02 E-value=7.3e-08 Score=105.49 Aligned_cols=182 Identities=19% Similarity=0.236 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHhCCceeeecchhHHHHHHhhhc-CCCC--CCCcEEEEEEecCccceeeEEEEeeccccccCeeeecC
Q 003784 174 QAERKGLMQAAELAGMNVLSLVNEHSGAALQYGID-KDFS--NESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVN 250 (795)
Q Consensus 174 ~~qR~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~-~~~~--~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~ 250 (795)
...-....++++.|||++..+=-++.|.+-.|... ..++ ...+.++++|+|+.++.++++. ++
T Consensus 135 k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~--------------~g 200 (340)
T PF11104_consen 135 KEIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQ--------------NG 200 (340)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEE--------------TT
T ss_pred HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEE--------------CC
Confidence 45677788999999999866644455543333321 1222 2346899999999999999983 34
Q ss_pred eEEEEEeccCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccCcce
Q 003784 251 QFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDF 330 (795)
Q Consensus 251 ~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~l~~~~d~ 330 (795)
.+.. ...-.+||.++++.|.+.+-- + ..+||..|..-+.. +
T Consensus 201 ~~~f---~R~i~~G~~~l~~~i~~~~~i----------~-----------~~~Ae~~k~~~~l~-----------~---- 241 (340)
T PF11104_consen 201 KPIF---SRSIPIGGNDLTEAIARELGI----------D-----------FEEAEELKRSGGLP-----------E---- 241 (340)
T ss_dssp EEEE---EEEES-SHHHHHHHHHHHTT-----------------------HHHHHHHHHHT-------------------
T ss_pred EEEE---EEEEeeCHHHHHHHHHHhcCC----------C-----------HHHHHHHHhcCCCC-----------c----
Confidence 3221 122379999999999866421 1 24555555531100 0
Q ss_pred EEEeeHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCCCccEEEEecCccCCHHHHHHHHHHhCCC--------ccCCCC
Q 003784 331 RSSITRQKFEELCEDLWERSLVPLREVLNY--SGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRT--------ELDRHL 400 (795)
Q Consensus 331 ~~~itr~efe~l~~~~~~~i~~~i~~~l~~--a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~--------~i~~~~ 400 (795)
+...+.+.+.++++..-|.+.++- .......|+.|+|+||++++|.+.+.|.+.++-. .+..+.
T Consensus 242 ------~~~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~~ 315 (340)
T PF11104_consen 242 ------EYDQDALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLDP 315 (340)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--T
T ss_pred ------chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcChHHhCccCc
Confidence 223345556666666666666552 2234558999999999999999999999999763 111122
Q ss_pred C----------cchhhHhhHHHHH
Q 003784 401 D----------ADEAIVLGASLLA 414 (795)
Q Consensus 401 n----------~deaVa~GAa~~a 414 (795)
+ |+.++|.|.|+++
T Consensus 316 ~~~~~~~~~~~~~~avA~GLAlR~ 339 (340)
T PF11104_consen 316 KINSEYLQEDAPQFAVALGLALRG 339 (340)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChhhhhhhhhHHHHHHHHhhcC
Confidence 2 5668999998864
No 46
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=98.83 E-value=1.3e-07 Score=102.29 Aligned_cols=173 Identities=19% Similarity=0.223 Sum_probs=97.4
Q ss_pred eeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCCCCchHHHHH
Q 003784 191 VLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMEL 270 (795)
Q Consensus 191 ~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~ 270 (795)
.+.+++|+.||.+.+...- . +...+||+|+||+|+|+++++ ++.-.+....+...+|-..+-.
T Consensus 142 ~V~V~PQ~~~A~~~~~~~~--~-~~~~~lVVDIGG~T~Dv~~v~--------------~~~~~~~~~~~~~~~Gvs~~~~ 204 (318)
T PF06406_consen 142 DVEVFPQSVGAVFDALMDL--D-EDESVLVVDIGGRTTDVAVVR--------------GGLPDISKCSGTPEIGVSDLYD 204 (318)
T ss_dssp EEEEEESSHHHHHHHHHTS----TTSEEEEEEE-SS-EEEEEEE--------------GGG--EEEEEEETTSSTHHHHH
T ss_pred eEEEEcccHHHHHHHHHhh--c-ccCcEEEEEcCCCeEEeeeec--------------CCccccchhccCCchhHHHHHH
Confidence 4688999999999886552 2 236799999999999999983 1111223345556889888888
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccCcceEEEeeHHHHHHHHHHHHHHH
Q 003784 271 RLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSITRQKFEELCEDLWERS 350 (795)
Q Consensus 271 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i 350 (795)
.+.+.+... . ... +......+.+.. .-+..++. ...+.+ .++++.+.++..++++
T Consensus 205 ~I~~~l~~~-~------~~~--s~~~~~~ii~~~-~~~~~~~~----------~i~~~~-----~~~~v~~~i~~~~~~l 259 (318)
T PF06406_consen 205 AIAQALRSA-G------IDT--SELQIDDIIRNR-KDKGYLRQ----------VINDED-----VIDDVSEVIEEAVEEL 259 (318)
T ss_dssp HHHHHTT---S------BHH--HHHHHHHHHHTT-T-HHHHHH----------HSSSHH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-c------CCC--cHHHHHHHHHhh-hccceecc----------cccchh-----hHHHHHHHHHHHHHHH
Confidence 877766541 1 000 000111111100 00000000 001111 1344555555555555
Q ss_pred HHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhC--CCccCCCCCcchhhHhhHH
Q 003784 351 LVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLG--RTELDRHLDADEAIVLGAS 411 (795)
Q Consensus 351 ~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~--~~~i~~~~n~deaVa~GAa 411 (795)
.+-|.+.+.. ..+++.|+|+||++ ..+.+.|++.|+ ...+...-||+.|-|+|-+
T Consensus 260 ~~~i~~~~~~----~~~~~~I~~vGGGA--~ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 260 INRILRELGD----FSDIDRIFFVGGGA--ILLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp HHHHHHHHTT----S-S-SEEEEESTTH--HHHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred HHHHHHHHhh----hccCCeEEEECCcH--HHHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 5555555432 34788999999997 467899999987 3456677899999999964
No 47
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=98.55 E-value=3.3e-06 Score=94.28 Aligned_cols=192 Identities=14% Similarity=0.185 Sum_probs=111.1
Q ss_pred EEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCcc-ceeEEEE-eCCcEEEcHhHHHHHhhCcchhhhhhhhhcCCCChh
Q 003784 27 SSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRK-SPALVAF-HESTRLLGEEASGIIARYPHRVYSQLRDMIGKPFKQ 104 (795)
Q Consensus 27 vGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~-~PS~v~~-~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~~~ 104 (795)
+-||.||.++++.+. .+. .|..+..+-.+++. ..++..- ..+...+|.++...... |.
T Consensus 9 iVIDnGS~~~k~Gfa--g~~-~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~-~~---------------- 68 (444)
T COG5277 9 IVIDNGSGTTKAGFA--GND-TPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDN-SL---------------- 68 (444)
T ss_pred EEEeCCCceEEeeec--CCC-CceeecccccccccccccccccccccccccCchhhhccCC-cc----------------
Confidence 889999999999998 333 57667666666554 3333321 23344555554321110 00
Q ss_pred hHhhHhhcCCCceEEECCCCcEEEEeCCCccccHHHHHHHHHHHHHHHH-HhhcCCCCCcEEEecCCCCCHHHHHHHHHH
Q 003784 105 VKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLV-DTHAKLAVKDFVISVPPYFGQAERKGLMQA 183 (795)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a-~~~~~~~~~~~VItVPa~f~~~qR~al~~A 183 (795)
.. ....+.+|. +.-=+....+++|+...- .......-..+++|-|..+....|..+.+.
T Consensus 69 -----------~~--------~~~p~~~g~-i~~W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~ 128 (444)
T COG5277 69 -----------LE--------LRYPIENGI-ILNWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITEL 128 (444)
T ss_pred -----------ce--------eecccccCc-cCCcHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHH
Confidence 00 000111221 111134445555554432 111111224699999999999998887766
Q ss_pred -HHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCCC
Q 003784 184 -AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAE 262 (795)
Q Consensus 184 -a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~ 262 (795)
.+...++.+.+..++.+++++.+... .+.+|+|+|.+.|+++-+- +| +.+........
T Consensus 129 ~fE~~~vp~~~~~~~~~l~~ya~g~~~------~~g~ViD~G~~~t~v~PV~--------------DG-~~l~~a~~ri~ 187 (444)
T COG5277 129 LFETLNVPALYLAIQAVLSLYASGSSD------ETGLVIDSGDSVTHVIPVV--------------DG-IVLPKAVKRID 187 (444)
T ss_pred HHHhcCCcceEeeHHHHHHHHhcCCCC------CceEEEEcCCCceeeEeee--------------cc-ccccccceeee
Confidence 44555666666666666665443221 4789999999999988772 22 22222333447
Q ss_pred CchHHHHHHHHHHHHHH
Q 003784 263 LGGQNMELRLVEYFADE 279 (795)
Q Consensus 263 lGG~~~D~~l~~~l~~~ 279 (795)
+||++++..|.+.+...
T Consensus 188 ~gG~~it~~l~~lL~~~ 204 (444)
T COG5277 188 IGGRDITDYLKKLLREK 204 (444)
T ss_pred cCcHHHHHHHHHHHhhc
Confidence 99999999998888774
No 48
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=98.45 E-value=1.5e-05 Score=83.79 Aligned_cols=116 Identities=21% Similarity=0.232 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHHHH-HHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEE
Q 003784 140 ELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQA-AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHV 218 (795)
Q Consensus 140 el~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~A-a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~v 218 (795)
+++.++++|..+.... .+..-.-++||-|++=+.+.|+.+.+. .+...++...|..+|+++|++-| + .+-
T Consensus 86 D~~~~~w~~~~~~~Lk-~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G--r------sta 156 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQLK-VNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANG--R------STA 156 (426)
T ss_pred HHHHHHHHHHHhhhhh-cCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcC--C------Cce
Confidence 5677778877742221 122224589999998888889887776 45567777888888888887543 2 567
Q ss_pred EEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCCCCchHHHHHHHHHHHHHH
Q 003784 219 VFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADE 279 (795)
Q Consensus 219 lV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~ 279 (795)
||+|+|++++.++-+- +|.+--.++... .+||+-++..+.+.|..+
T Consensus 157 lVvDiGa~~~svsPV~--------------DG~Vlqk~vvks-~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 157 LVVDIGATHTSVSPVH--------------DGYVLQKGVVKS-PLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred EEEEecCCCceeeeee--------------cceEeeeeeEec-ccchHHHHHHHHHHHhhc
Confidence 9999999999988772 443333344333 899999999999998866
No 49
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.35 E-value=4e-05 Score=84.29 Aligned_cols=272 Identities=14% Similarity=0.114 Sum_probs=142.8
Q ss_pred cEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceeEEEEeCCcEEEcHhHHHHHhhCcchhhhhhhhhcCCCChh
Q 003784 25 AVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHESTRLLGEEASGIIARYPHRVYSQLRDMIGKPFKQ 104 (795)
Q Consensus 25 ~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~~~ 104 (795)
..||||+|||.+.+-+.+ -.+.|..+....|.+ .+.+.+.+|=.+
T Consensus 7 ~SVGIDIGTsTTqlvfSr--------l~l~n~a~~~~vpr~-~I~dkev~yrS~-------------------------- 51 (475)
T PRK10719 7 LSVGIDIGTTTTQVIFSR--------LELENRASVFQVPRI-EIIDKEIIYRSP-------------------------- 51 (475)
T ss_pred EEEEEeccCceEEEEEEE--------EEEecccccccCceE-EEeeeEEEEecC--------------------------
Confidence 369999999999997761 234565565556653 344444443211
Q ss_pred hHhhHhhcCCCceEEECCCCcEEEE-eCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHHHH
Q 003784 105 VKHLIDSLYLPFNVVEDSRGAVSFK-IDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQA 183 (795)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~A 183 (795)
+.|. +.+...+..+.+-..+-..+++.--..-.....-.+||.++..-++-++.+..+
T Consensus 52 ---------------------i~fTPl~~~~~ID~~~i~~~V~~ey~~Agi~~~die~~ahIITg~~~~~~Nl~~~v~~~ 110 (475)
T PRK10719 52 ---------------------IYFTPLLKQGEIDEAAIKELIEEEYQKAGIAPESIDSGAVIITGETARKENAREVVMAL 110 (475)
T ss_pred ---------------------ceecCCCCCccccHHHHHHHHHHHHHHcCCCHHHccccEEEEEechhHHHHHHHHHHHh
Confidence 1111 011133555555554444444321111112234578888876555544444432
Q ss_pred HH--------HhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEE
Q 003784 184 AE--------LAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVK 255 (795)
Q Consensus 184 a~--------~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl 255 (795)
.. .||+++-.++. |-|++.+-.. . ++...++++|+|||||+++++. +|.+ .
T Consensus 111 ~~~~gdfVVA~AG~~le~iva-~~ASg~avLs-e---Eke~gVa~IDIGgGTT~iaVf~--------------~G~l--~ 169 (475)
T PRK10719 111 SGSAGDFVVATAGPDLESIIA-GKGAGAQTLS-E---ERNTRVLNIDIGGGTANYALFD--------------AGKV--I 169 (475)
T ss_pred cccccceeeeccCccHHHhhh-HHHhhHHHhh-h---hccCceEEEEeCCCceEEEEEE--------------CCEE--E
Confidence 21 26776666666 8887766542 2 3457899999999999999994 3432 2
Q ss_pred EeccCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccCcceEEEee
Q 003784 256 DVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSIT 335 (795)
Q Consensus 256 ~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~l~~~~d~~~~it 335 (795)
.+ ....+||+.+..- - .+ .+..-....+++.+.+ - +. +..+. .++
T Consensus 170 ~T-~~l~vGG~~IT~D-~------------~~-~i~yis~~~~~l~~~~---~----------~~---~~~G~----~~~ 214 (475)
T PRK10719 170 DT-ACLNVGGRLIETD-S------------QG-RVTYISPPGQMILDEL---G----------LA---ITDGR----SLT 214 (475)
T ss_pred EE-EEEecccceEEEC-C------------CC-CEEEEChHHHHHHHHc---C----------CC---ccccc----cCC
Confidence 22 2337888877521 0 00 0111111222332221 0 00 11111 677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHH-CCCC-CCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhh
Q 003784 336 RQKFEELCEDLWERSLVPLREV-------LNY-SGLK-MDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAI 406 (795)
Q Consensus 336 r~efe~l~~~~~~~i~~~i~~~-------l~~-a~~~-~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaV 406 (795)
.+++..+|+.+.+-+.+.+... |-. -.++ ...++.|.+.||-+..-|-+ ..-...--.|--+
T Consensus 215 ~~~L~~i~~~Ma~~l~~~i~~~~~~~~~~l~~~~~l~~~~~~~~i~fSGGVad~iy~~---------~~~~~f~yGDiG~ 285 (475)
T PRK10719 215 GEQLQQVTRRMAELLVEVIGGALSPLAQALMTTKLLPAGVPPEIITFSGGVGDCIYRH---------QPADPFRYGDIGP 285 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCChhHHhhccCCCCCCCCCCCEEEEecchHhheecC---------CcCCccccCcHHH
Confidence 8888888887777666665411 111 1232 46789999999976542211 1111122345567
Q ss_pred HhhHHHHHHHh
Q 003784 407 VLGASLLAANL 417 (795)
Q Consensus 407 a~GAa~~aa~l 417 (795)
-+|.++.....
T Consensus 286 lLg~ai~~~~~ 296 (475)
T PRK10719 286 LLATALHEHPR 296 (475)
T ss_pred HHHHHHhhChh
Confidence 77777665443
No 50
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.30 E-value=0.00018 Score=74.83 Aligned_cols=160 Identities=21% Similarity=0.278 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhCCceeeecchhHHHHHHhhh-cCCCCCC--CcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEE
Q 003784 177 RKGLMQAAELAGMNVLSLVNEHSGAALQYGI-DKDFSNE--SRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQ 253 (795)
Q Consensus 177 R~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~-~~~~~~~--~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~ 253 (795)
-....+|++.|||....+==|.-|.--+|.. -..+..+ ...++|+|+|+..+.++++. ++.
T Consensus 151 v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~--------------~gk-- 214 (354)
T COG4972 151 VESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQ--------------DGK-- 214 (354)
T ss_pred hHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEE--------------CCe--
Confidence 4556789999999886554455555444431 1122222 23479999999999999984 222
Q ss_pred EEEeccCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccCcceEEE
Q 003784 254 VKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFRSS 333 (795)
Q Consensus 254 vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~l~~~~d~~~~ 333 (795)
.+ +..+-.+||+.+...|.+.+ +.+. ..++.+|....-.. ++.
T Consensus 215 ~l-y~r~~~~g~~Qlt~~i~r~~----------~L~~-----------~~a~~~k~~~~~P~-------------~y~-- 257 (354)
T COG4972 215 IL-YTREVPVGTDQLTQEIQRAY----------SLTE-----------EKAEEIKRGGTLPT-------------DYG-- 257 (354)
T ss_pred ee-eEeeccCcHHHHHHHHHHHh----------CCCh-----------hHhHHHHhCCCCCC-------------chh--
Confidence 11 23345799999998876543 2221 23445554332221 110
Q ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCC
Q 003784 334 ITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGR 393 (795)
Q Consensus 334 itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~ 393 (795)
-+-+....+.+.++|.+.|+-.+...+ ..+|++++|.||+.++-.+.+.+.+.++-
T Consensus 258 --~~vl~~f~~~l~~ei~Rslqfy~~~s~--~~~id~i~LaGggA~l~gL~~~i~qrl~~ 313 (354)
T COG4972 258 --SEVLRPFLGELTQEIRRSLQFYLSQSE--MVDIDQILLAGGGASLEGLAAAIQQRLSI 313 (354)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhccc--cceeeEEEEecCCcchhhHHHHHHHHhCC
Confidence 111233344455555555555554454 45899999999999999999999999874
No 51
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.27 E-value=0.00017 Score=85.64 Aligned_cols=274 Identities=17% Similarity=0.198 Sum_probs=157.8
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcCC--------------CCCcEEEecCCCCCHHHHHHHHHHHHHh--------CCc--
Q 003784 135 NFSVEELLAMVLSYAVNLVDTHAKL--------------AVKDFVISVPPYFGQAERKGLMQAAELA--------GMN-- 190 (795)
Q Consensus 135 ~~~~eel~a~~L~~l~~~a~~~~~~--------------~~~~~VItVPa~f~~~qR~al~~Aa~~A--------Gl~-- 190 (795)
.||-.-++.++|..+.-+|..+.+. ....+++|||+.....+|+.++++++.| |+.
T Consensus 416 ~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~lGw~~~ 495 (1002)
T PF07520_consen 416 HYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKALGWHPW 495 (1002)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 5777788888888888777665432 2567999999999999999998888765 432
Q ss_pred -------------------eeeecchhHHHHHHhhh------------------cC-CC-------CCCCcEEEEEEecC
Q 003784 191 -------------------VLSLVNEHSGAALQYGI------------------DK-DF-------SNESRHVVFYDMGA 225 (795)
Q Consensus 191 -------------------~~~li~Ep~AAAl~y~~------------------~~-~~-------~~~~~~vlV~D~Gg 225 (795)
+..=-+|.||.=+-|.+ .+ +. ..+.-+|.-+|+||
T Consensus 496 ~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriASIDIGG 575 (1002)
T PF07520_consen 496 DDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIASIDIGG 575 (1002)
T ss_pred CCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEEEecCC
Confidence 11113455554333311 11 00 11234689999999
Q ss_pred ccceeeEEEEeeccccccCeeeecCeEEEEEeccCCCCchHHHHHHHH-HHHHHHHhhhc---C-----------CCCCC
Q 003784 226 TTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLV-EYFADEFNKQV---G-----------NGVDV 290 (795)
Q Consensus 226 gT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~-~~l~~~~~~~~---~-----------~~~~~ 290 (795)
||||+.|-.|....+...-..+.+. .+-..|- .+.|+||=..++ .+++..+.+.. + .+.+-
T Consensus 576 GTTDL~It~Y~ld~G~g~nv~I~P~---q~FReGF-kvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~dg 651 (1002)
T PF07520_consen 576 GTTDLMITQYRLDDGQGSNVKITPE---QLFREGF-KVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGGDG 651 (1002)
T ss_pred CcceeeEEEEEeccCCcceeEECcc---hhhhhhc-ccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCCcc
Confidence 9999999988744321110011111 1112222 677888776554 45544443320 0 11110
Q ss_pred CCC-HH-------------HHHHHHHHHHHHhhhccCCCceeEEEeec---------------------------ccCcc
Q 003784 291 RKS-PK-------------AMAKLKKQVKRTKEILSANTMAPISVESL---------------------------YVDID 329 (795)
Q Consensus 291 ~~~-~~-------------~~~~L~~~~e~~K~~LS~~~~~~i~i~~l---------------------------~~~~d 329 (795)
... .+ ...+++.++|..-.. +........+..+ ++=.+
T Consensus 652 ~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~-~~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdild 730 (1002)
T PF07520_consen 652 QSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPL-DPSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDILD 730 (1002)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-ccCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCcceec
Confidence 000 00 012344555543211 0001111111111 11134
Q ss_pred eEEEeeHHHHHHHHH---HHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCC--c---------
Q 003784 330 FRSSITRQKFEELCE---DLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRT--E--------- 395 (795)
Q Consensus 330 ~~~~itr~efe~l~~---~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~--~--------- 395 (795)
+.+.|+..++...+- -.+......+-+++..- +.|-++|+|--||+|.||..+++..+.. .
T Consensus 731 v~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y-----~CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y~t 805 (1002)
T PF07520_consen 731 VPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHY-----DCDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGYRT 805 (1002)
T ss_pred ceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHh-----CCCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCeee
Confidence 456899999988774 45666666666666544 4578999999999999999999887542 1
Q ss_pred --------cCCCCCcchhhHhhHHHHHHHhc
Q 003784 396 --------LDRHLDADEAIVLGASLLAANLS 418 (795)
Q Consensus 396 --------i~~~~n~deaVa~GAa~~aa~ls 418 (795)
-.+--||-..||.||.+++....
T Consensus 806 g~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 806 GNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred cccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 12334899999999998876544
No 52
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.04 E-value=0.0016 Score=68.32 Aligned_cols=74 Identities=23% Similarity=0.356 Sum_probs=52.1
Q ss_pred eeHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccC-CCCCcchhhHhhHH
Q 003784 334 ITRQKFE-ELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELD-RHLDADEAIVLGAS 411 (795)
Q Consensus 334 itr~efe-~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~-~~~n~deaVa~GAa 411 (795)
++++++- .+|..+..++..+ +++.++. ..|+|+||.++.|.+++.+++.++. ++. .+.+|+.+.|+|||
T Consensus 213 ~~~edI~aGl~~sia~rv~~~----~~~~~i~----~~v~~~GGva~N~~l~~al~~~Lg~-~v~~~p~~p~~~GAlGAA 283 (293)
T TIGR03192 213 YTKNMVIAAYCQAMAERVVSL----LERIGVE----EGFFITGGIAKNPGVVKRIERILGI-KAVDTKIDSQIAGALGAA 283 (293)
T ss_pred CCHHHHHHHHHHHHHHHHHHH----hcccCCC----CCEEEECcccccHHHHHHHHHHhCC-CceeCCCCccHHHHHHHH
Confidence 3444442 3445555554433 3332322 2489999999999999999999986 444 46789999999999
Q ss_pred HHHHH
Q 003784 412 LLAAN 416 (795)
Q Consensus 412 ~~aa~ 416 (795)
++|..
T Consensus 284 L~A~~ 288 (293)
T TIGR03192 284 LFGYT 288 (293)
T ss_pred HHHHH
Confidence 99865
No 53
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=97.99 E-value=0.00013 Score=76.25 Aligned_cols=169 Identities=16% Similarity=0.156 Sum_probs=97.8
Q ss_pred eecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCCCCchHHHHHHH
Q 003784 193 SLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRL 272 (795)
Q Consensus 193 ~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l 272 (795)
..++|.+|-+.+-.... + ..=.|+|+||..+-+..++ ++.+.-.........|+..|.+.+
T Consensus 73 ~~~~ei~~~~~g~~~~~--~---~~~~vidiGgqd~k~i~~~--------------~g~~~~~~~n~~ca~Gtg~f~e~~ 133 (248)
T TIGR00241 73 KIVTEISCHGKGANYLA--P---EARGVIDIGGQDSKVIKID--------------DGKVDDFTMNDKCAAGTGRFLEVT 133 (248)
T ss_pred CceEEhhHHHHHHHHHC--C---CCCEEEEecCCeeEEEEEC--------------CCcEeeeeecCcccccccHHHHHH
Confidence 36778888665443322 1 1225999999988877772 333222223334456788887777
Q ss_pred HHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhh----ccCCCceeEEEee-cccCcceEEEeeHHHHHHHHHHHH
Q 003784 273 VEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEI----LSANTMAPISVES-LYVDIDFRSSITRQKFEELCEDLW 347 (795)
Q Consensus 273 ~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~----LS~~~~~~i~i~~-l~~~~d~~~~itr~efe~l~~~~~ 347 (795)
++.+- .++ ++++.++.. ..-+..+.+..+. +..... ...++ ++++..++
T Consensus 134 a~~l~----------~~~-----------~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~l~--~g~~~---~di~~~~~ 187 (248)
T TIGR00241 134 ARRLG----------VSV-----------EELGSLAEKADRKAKISSMCTVFAESELISLLA--AGVKK---EDILAGVY 187 (248)
T ss_pred HHHcC----------CCH-----------HHHHHHHhcCCCCCCcCCEeEEEechhHHHHHH--CCCCH---HHHHHHHH
Confidence 76542 221 222222211 1111222222221 111000 01233 34555555
Q ss_pred HHHHHHHHHHHHHCCCCCCCcc-EEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHH
Q 003784 348 ERSLVPLREVLNYSGLKMDEIY-AVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASL 412 (795)
Q Consensus 348 ~~i~~~i~~~l~~a~~~~~~i~-~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~ 412 (795)
+.+..-+.+.+...+ ++ .|+|+||.++.|++.+.+.+.++. ++..+.++..+.|+|||+
T Consensus 188 ~~va~~i~~~~~~~~-----~~~~Vvl~GGva~n~~l~~~l~~~lg~-~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 188 ESIAERVAEMLQRLK-----IEAPIVFTGGVSKNKGLVKALEKKLGM-KVITPPEPQIVGAVGAAL 247 (248)
T ss_pred HHHHHHHHHHHhhcC-----CCCCEEEECccccCHHHHHHHHHHhCC-cEEcCCCccHHHHHHHHh
Confidence 555555555554433 34 699999999999999999999975 677788898999999996
No 54
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=97.83 E-value=0.0033 Score=64.99 Aligned_cols=45 Identities=27% Similarity=0.264 Sum_probs=38.4
Q ss_pred EEEEecCccCCHHHHHHHHHHhCCCc----cCCCCCcchhhHhhHHHHH
Q 003784 370 AVELIGGGTRVPKLQAKLQEYLGRTE----LDRHLDADEAIVLGASLLA 414 (795)
Q Consensus 370 ~V~LvGG~sriP~v~~~l~~~f~~~~----i~~~~n~deaVa~GAa~~a 414 (795)
.|+|+||.++.+.+.+.|++.++... +..+.+|+.+-|+|||++|
T Consensus 214 ~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 214 TVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred cEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 49999999999999999999996433 4456788999999999874
No 55
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.74 E-value=0.0028 Score=69.08 Aligned_cols=45 Identities=31% Similarity=0.356 Sum_probs=41.5
Q ss_pred EEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHH
Q 003784 370 AVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAA 415 (795)
Q Consensus 370 ~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa 415 (795)
.|+++||.++.+.+.+.+++.++. ++..+.+|+.+.|.|||++|.
T Consensus 358 ~VvftGGva~N~gvv~ale~~Lg~-~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 358 PVILVGGTSLIEGLVKALGDLLGI-EVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred cEEEECChhhhHHHHHHHHHHhCC-cEEECCcccHHHHHHHHHHhc
Confidence 499999999999999999999986 677788999999999999985
No 56
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=97.73 E-value=0.00035 Score=75.51 Aligned_cols=210 Identities=19% Similarity=0.175 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEE
Q 003784 143 AMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYD 222 (795)
Q Consensus 143 a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D 222 (795)
..+++|+...-.. ......-+++|-|+.+...-|+.|.+..-. -|++-.+.-.. .|.+ |+..+ .+=+|+|
T Consensus 82 e~iw~~if~~~L~-~~Pee~pvllte~pl~p~~nREk~tqi~FE-~fnvpa~yva~-qavl-ya~g~------ttG~VvD 151 (372)
T KOG0676|consen 82 EKIWHHLFYSELL-VAPEEHPVLLTEPPLNPKANREKLTQIMFE-TFNVPALYVAI-QAVL-YASGR------TTGLVVD 151 (372)
T ss_pred HHHHHHHHHHhhc-cCcccCceEeecCCCCchHhHHHHHHHhhh-hcCccHhHHHH-HHHH-HHcCC------eeEEEEE
Confidence 5666666521111 111224699999999999999988876432 23443333222 3333 65544 4569999
Q ss_pred ecCcccee-eEEEEeeccccccCeeeecCeEEEEEeccCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 003784 223 MGATTTYA-ALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLK 301 (795)
Q Consensus 223 ~GggT~dv-svv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~ 301 (795)
+|.|-+++ -++ .| +.+...-....+||+++..-|...|.+ . +........ +
T Consensus 152 ~G~gvt~~vPI~---------------eG-~~lp~ai~~ldl~G~dlt~~l~~~L~~----~---g~s~~~~~~-----~ 203 (372)
T KOG0676|consen 152 SGDGVTHVVPIY---------------EG-YALPHAILRLDLAGRDLTDYLLKQLRK----R---GYSFTTSAE-----F 203 (372)
T ss_pred cCCCceeeeecc---------------cc-cccchhhheecccchhhHHHHHHHHHh----c---ccccccccH-----H
Confidence 99997754 343 22 233334455589999999877666655 1 111111100 1
Q ss_pred HHHHHHhhhccCCC------------ceeEEEe-ecccCcceEEEeeHHHHH---HHHHHH-----HHHHHHHHHHHHHH
Q 003784 302 KQVKRTKEILSANT------------MAPISVE-SLYVDIDFRSSITRQKFE---ELCEDL-----WERSLVPLREVLNY 360 (795)
Q Consensus 302 ~~~e~~K~~LS~~~------------~~~i~i~-~l~~~~d~~~~itr~efe---~l~~~~-----~~~i~~~i~~~l~~ 360 (795)
.-++.+|+.|+... ...+... .|-++.- +.+.-+.|. -+++|- ...+...+-..+-+
T Consensus 204 eIv~diKeklCyvald~~~e~~~~~~~~~l~~~y~lPDg~~--i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~k 281 (372)
T KOG0676|consen 204 EIVRDIKEKLCYVALDFEEEEETANTSSSLESSYELPDGQK--ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMK 281 (372)
T ss_pred HHHHHhHhhhcccccccchhhhcccccccccccccCCCCCE--EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHh
Confidence 11333444432111 1111100 0222222 344443332 223321 12233333333333
Q ss_pred C--CCCCCCccEEEEecCccCCHHHHHHHHHHhC
Q 003784 361 S--GLKMDEIYAVELIGGGTRVPKLQAKLQEYLG 392 (795)
Q Consensus 361 a--~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~ 392 (795)
+ ++.+.-...|+|+||++.+|.+-+++.+-..
T Consensus 282 cd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~ 315 (372)
T KOG0676|consen 282 CDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQ 315 (372)
T ss_pred CChhHhHHHHhheEEeCCcccchhHHHHHHHHHh
Confidence 3 2333345679999999999999998887653
No 57
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=97.71 E-value=0.00042 Score=70.28 Aligned_cols=190 Identities=15% Similarity=0.153 Sum_probs=99.2
Q ss_pred HHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCCCCc
Q 003784 185 ELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELG 264 (795)
Q Consensus 185 ~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~lG 264 (795)
+..|.++..-=-|+.+|.+...... ..+..+.|+|+||||||.+++.- .+.+.-+.-+| .
T Consensus 106 ~~lgv~V~igGvEAemAi~GALTTP---Gt~~PlaIlDmG~GSTDAsii~~-------------~g~v~~iHlAG----A 165 (332)
T PF08841_consen 106 EELGVPVEIGGVEAEMAILGALTTP---GTDKPLAILDMGGGSTDASIINR-------------DGEVTAIHLAG----A 165 (332)
T ss_dssp HHHTSEEEEECEHHHHHHHHHTTST---T--SSEEEEEE-SSEEEEEEE-T-------------TS-EEEEEEE-----S
T ss_pred HHHCCceEEccccHHHHHhcccCCC---CCCCCeEEEecCCCcccHHHhCC-------------CCcEEEEEecC----C
Confidence 4568888777789999988765554 23456899999999999999931 44554444332 3
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEE----------ee-----------
Q 003784 265 GQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISV----------ES----------- 323 (795)
Q Consensus 265 G~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i----------~~----------- 323 (795)
|+-++..|...| +.+ + +.-||..|+.--..-+..+++ +.
T Consensus 166 G~mVTmlI~sEL----------Gl~----d------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvv 225 (332)
T PF08841_consen 166 GNMVTMLINSEL----------GLE----D------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVV 225 (332)
T ss_dssp HHHHHHHHHHHC----------T-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEE
T ss_pred chhhHHHHHHhh----------CCC----C------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEE
Confidence 555555543222 111 0 234566665321110100010 00
Q ss_pred -cccC--cceEEEeeHHHHHHHHHHHHHH-HHHHHHHHHHHC--CCCCCCccEEEEecCccCCHHHHHHHHHHhCCC---
Q 003784 324 -LYVD--IDFRSSITRQKFEELCEDLWER-SLVPLREVLNYS--GLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRT--- 394 (795)
Q Consensus 324 -l~~~--~d~~~~itr~efe~l~~~~~~~-i~~~i~~~l~~a--~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~--- 394 (795)
+.++ .++...++-+++..+=...=++ +..-..++|+.. .-+..+|+.|+|+|||+.=.-|-+++.+.+..-
T Consensus 226 i~~~~~lvPi~~~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iV 305 (332)
T PF08841_consen 226 ILKEDGLVPIPGDLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIV 305 (332)
T ss_dssp EECTTEEEEESSTS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-E
T ss_pred EecCCceeecCCCccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcce
Confidence 0011 1111123333333332221111 111223444432 223568999999999998888888888877432
Q ss_pred ----ccCCCCCcchhhHhhHHHHH
Q 003784 395 ----ELDRHLDADEAIVLGASLLA 414 (795)
Q Consensus 395 ----~i~~~~n~deaVa~GAa~~a 414 (795)
.+.-..-|..|||.|.++.-
T Consensus 306 aGRgNIrG~eGPRNAVATGLvlsy 329 (332)
T PF08841_consen 306 AGRGNIRGVEGPRNAVATGLVLSY 329 (332)
T ss_dssp EEE--GGGTSTTSTHHHHHHHHHH
T ss_pred eeccccccccCchHHHHHHHHHhh
Confidence 45556678899999998753
No 58
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=97.59 E-value=0.018 Score=61.51 Aligned_cols=72 Identities=24% Similarity=0.255 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHHH
Q 003784 340 EELCEDLWERSLVPLRE-VLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAAN 416 (795)
Q Consensus 340 e~l~~~~~~~i~~~i~~-~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~ 416 (795)
|+++.-+...+..-+.. +++...+. +. |+|+||.+....+.+++++.++. ++..+.+|...-|.|||++|..
T Consensus 318 EdI~AGl~~Sv~~~v~~~~~~~~~i~--~~--iv~~GGva~n~av~~ale~~lg~-~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 318 EDILAGLAYSVAENVAEKVIKRVDIE--EP--IVLQGGVALNKAVVRALEDLLGR-KVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCC--CC--EEEECcchhhHHHHHHHHHHhCC-eeecCCccchhhHHHHHHHHhh
Confidence 44555544444333333 44443332 22 99999999999999999999985 7889999999999999999864
No 59
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.55 E-value=0.0041 Score=68.75 Aligned_cols=279 Identities=18% Similarity=0.162 Sum_probs=143.4
Q ss_pred cEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceeEEEEeCCcEEEcHhHHHHHhhCcchhhhhhhhhcCCCChh
Q 003784 25 AVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHESTRLLGEEASGIIARYPHRVYSQLRDMIGKPFKQ 104 (795)
Q Consensus 25 ~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~~~ 104 (795)
..||||+|||.+.+-+. .+ .+.|-.|...+|.+ .+.+.+.+|=...
T Consensus 4 ~SVGIDIGTSTTQlvfS-------rl-~l~n~a~~~~vPri-~I~dkeViYrS~I------------------------- 49 (473)
T PF06277_consen 4 LSVGIDIGTSTTQLVFS-------RL-TLENRASGFSVPRI-EIVDKEVIYRSPI------------------------- 49 (473)
T ss_pred EEEEEeecCCceeEEEE-------Ee-EEEeccCCCccceE-EEeccEEEecCCc-------------------------
Confidence 36999999999998775 12 34465565566664 4445554442110
Q ss_pred hHhhHhhcCCCceEEECCCCcEEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHHHHH
Q 003784 105 VKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAA 184 (795)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~Aa 184 (795)
.+.| +.+...+..+.+-..+.+..++.--.--...-.-++||=-+--..+.|..+..-+
T Consensus 50 -------~fTP--------------l~~~~~ID~~al~~iv~~eY~~Agi~p~~I~TGAVIITGETArKeNA~~v~~~Ls 108 (473)
T PF06277_consen 50 -------YFTP--------------LLSQTEIDAEALKEIVEEEYRKAGITPEDIDTGAVIITGETARKENAREVLHALS 108 (473)
T ss_pred -------cccC--------------CCCCCccCHHHHHHHHHHHHHHcCCCHHHCccccEEEecchhhhhhHHHHHHHHH
Confidence 0111 1112345666665555555543211110111123667766666778888888888
Q ss_pred HHhCCceeeec---chhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCC
Q 003784 185 ELAGMNVLSLV---NEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDA 261 (795)
Q Consensus 185 ~~AGl~~~~li---~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~ 261 (795)
..||==++.-- -|+.=|+-..|...--.+....|+=+|+||||+.+++++ .|. ++++..-
T Consensus 109 ~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~--------------~G~--v~~T~cl- 171 (473)
T PF06277_consen 109 GFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFD--------------NGE--VIDTACL- 171 (473)
T ss_pred HhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEE--------------CCE--EEEEEEE-
Confidence 88874332211 133323222211110012357899999999999999995 332 4444443
Q ss_pred CCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccCcceEEEeeHHHHHH
Q 003784 262 ELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSITRQKFEE 341 (795)
Q Consensus 262 ~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~l~~~~d~~~~itr~efe~ 341 (795)
++||+.|- |... + .+..-....++|.+.+ -.. +..+. .++.++++.
T Consensus 172 ~IGGRLi~----------~d~~--g--~i~yis~~~~~l~~~~---~~~-------------~~~G~----~~~~~~l~~ 217 (473)
T PF06277_consen 172 DIGGRLIE----------FDPD--G--RITYISPPIQRLLEEL---GLE-------------LSVGD----RADPEQLRK 217 (473)
T ss_pred eeccEEEE----------EcCC--C--cEEEECHHHHHHHHHh---CCC-------------CCccc----cCCHHHHHH
Confidence 78888662 1111 0 0101111222232221 110 11122 677888888
Q ss_pred HHHHHHHHHHHHHHHH--------HHH-CCCC-CCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHH
Q 003784 342 LCEDLWERSLVPLREV--------LNY-SGLK-MDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGAS 411 (795)
Q Consensus 342 l~~~~~~~i~~~i~~~--------l~~-a~~~-~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa 411 (795)
+|+.+.+-+.+.+... |-. ..++ ...++.|.+.||-+.. +...- .-....-.|--+-+|.+
T Consensus 218 i~~~Ma~~l~~~i~~~~~~~~~~~L~~~~~l~~~~~~~~v~fSGGVad~------iy~~~---~~d~~~yGDIG~lLg~a 288 (473)
T PF06277_consen 218 ICRRMAELLVEVIGGKPLSPLAEELLTTPPLPDDYPIDAVTFSGGVADC------IYRPE---EADPFRYGDIGPLLGQA 288 (473)
T ss_pred HHHHHHHHHHHHhcCCCCChhhhhhccCCCCCcCCCCCEEEEechHHHH------hhCCC---CCCccccCcHHHHHHHH
Confidence 8877766665554322 111 1233 3578999999996532 21111 11122334667777777
Q ss_pred HHHHHhc
Q 003784 412 LLAANLS 418 (795)
Q Consensus 412 ~~aa~ls 418 (795)
+......
T Consensus 289 i~~~~~~ 295 (473)
T PF06277_consen 289 IRESPLL 295 (473)
T ss_pred HHhChhh
Confidence 7655443
No 60
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.30 E-value=0.03 Score=63.10 Aligned_cols=84 Identities=21% Similarity=0.186 Sum_probs=54.2
Q ss_pred eEEEeeHHHHHHHHHHH---HHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCC------------
Q 003784 330 FRSSITRQKFEELCEDL---WERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRT------------ 394 (795)
Q Consensus 330 ~~~~itr~efe~l~~~~---~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~------------ 394 (795)
+.+.|.-.++++.+-.- +......+-+++.. -+.|-++|+|--||+|.||..++...+..
T Consensus 743 ~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~-----y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrv 817 (1014)
T COG4457 743 VPLAIDLSQLHECFLSGDYDITGVFDALCEAINH-----YDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRV 817 (1014)
T ss_pred cceeccHHHHHHHHhhCcccccchHHHHHHHHhh-----hcccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceec
Confidence 34466666666554332 33333333344332 25678999999999999999998765431
Q ss_pred -------ccCCCCCcchhhHhhHHHHHHHhc
Q 003784 395 -------ELDRHLDADEAIVLGASLLAANLS 418 (795)
Q Consensus 395 -------~i~~~~n~deaVa~GAa~~aa~ls 418 (795)
+..+--||...+|.||.+++..+.
T Consensus 818 g~WYPF~k~grIddPKtTAaVGAMLC~Lsl~ 848 (1014)
T COG4457 818 GTWYPFRKQGRIDDPKTTAAVGAMLCALSLE 848 (1014)
T ss_pred cceecccccCcCCCcchHHHHHHHHHHHHhh
Confidence 123334789999999998877644
No 61
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=97.01 E-value=0.0065 Score=66.47 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=83.1
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcCCCCC-----cEEEecCCCCCHHHHHHHHHH-HHHhCCceeeecchhHHHHHHhhhc
Q 003784 135 NFSVEELLAMVLSYAVNLVDTHAKLAVK-----DFVISVPPYFGQAERKGLMQA-AELAGMNVLSLVNEHSGAALQYGID 208 (795)
Q Consensus 135 ~~~~eel~a~~L~~l~~~a~~~~~~~~~-----~~VItVPa~f~~~qR~al~~A-a~~AGl~~~~li~Ep~AAAl~y~~~ 208 (795)
..+..++++.+-+-+.-...+.++.+.+ .+|+-||-.|.....+.+.+. ....||.-..++-|+.||.+..|+.
T Consensus 196 y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGls 275 (618)
T KOG0797|consen 196 YYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLS 275 (618)
T ss_pred chhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCcc
Confidence 3566666665544333333444554432 589999999998876666555 5568999999999999999766543
Q ss_pred CCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCCCCchHHHHHHHHHHHHH
Q 003784 209 KDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFAD 278 (795)
Q Consensus 209 ~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~ 278 (795)
.-.|||+|+-+|.+++|+ .| +....+.--...||.||++.|+-++.+
T Consensus 276 --------s~CVVdiGAQkTsIaCVE--------------dG-vs~~ntri~L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 276 --------SACVVDIGAQKTSIACVE--------------DG-VSLPNTRIILPYGGDDITRCFLWLLRR 322 (618)
T ss_pred --------ceeEEEccCcceeEEEee--------------cC-ccccCceEEeccCCchHHHHHHHHHHh
Confidence 358999999999999994 11 111112222367999999999877654
No 62
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=96.75 E-value=0.036 Score=60.03 Aligned_cols=46 Identities=20% Similarity=0.220 Sum_probs=40.4
Q ss_pred cEEEEecCccCCHHHHHHHHHHhC----CCccCCCCCcchhhHhhHHHHH
Q 003784 369 YAVELIGGGTRVPKLQAKLQEYLG----RTELDRHLDADEAIVLGASLLA 414 (795)
Q Consensus 369 ~~V~LvGG~sriP~v~~~l~~~f~----~~~i~~~~n~deaVa~GAa~~a 414 (795)
..|+|+||.++.+.+.+.|++.++ ..++..+.+|+.+.|+|||++|
T Consensus 383 ~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 383 DQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 359999999999999999999995 3457778899999999999875
No 63
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=96.42 E-value=0.0057 Score=61.30 Aligned_cols=48 Identities=40% Similarity=0.585 Sum_probs=41.3
Q ss_pred CccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHHH
Q 003784 367 EIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAAN 416 (795)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~ 416 (795)
.++.|.++||.++.|.+.+++.+.|+. ++... +..++.|.|||+.|+.
T Consensus 149 ~~~~i~~~GG~~~n~~~~q~~Advl~~-~V~~~-~~~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 149 PIRRIRVSGGGAKNPLWMQILADVLGR-PVVRP-EVEEASALGAALLAAV 196 (198)
T ss_dssp CESEEEEESGGGGSHHHHHHHHHHHTS-EEEEE-SSSTHHHHHHHHHHHH
T ss_pred cceeeEeccccccChHHHHHHHHHhCC-ceEeC-CCCchHHHHHHHHHHh
Confidence 488999999999999999999999995 55443 4489999999999874
No 64
>PRK13317 pantothenate kinase; Provisional
Probab=96.28 E-value=0.092 Score=55.46 Aligned_cols=49 Identities=27% Similarity=0.221 Sum_probs=41.6
Q ss_pred CccEEEEec-CccCCHHHHHHHHHHhC--CCccCCCCCcchhhHhhHHHHHH
Q 003784 367 EIYAVELIG-GGTRVPKLQAKLQEYLG--RTELDRHLDADEAIVLGASLLAA 415 (795)
Q Consensus 367 ~i~~V~LvG-G~sriP~v~~~l~~~f~--~~~i~~~~n~deaVa~GAa~~aa 415 (795)
.++.|+++| |.++.|.+++.+.+.+. ..++..+.+|..+.|+|||++|.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 456799999 79999999999999883 33667788999999999999876
No 65
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=96.27 E-value=0.11 Score=52.44 Aligned_cols=193 Identities=18% Similarity=0.212 Sum_probs=114.2
Q ss_pred CcEEEecCCCCCHHHHHHHHHH-HHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccc
Q 003784 162 KDFVISVPPYFGQAERKGLMQA-AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNA 240 (795)
Q Consensus 162 ~~~VItVPa~f~~~qR~al~~A-a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~ 240 (795)
..+.+|-|+-=...-|+.|.+. .+..||.-+-+- -.|+.--|+... -.=+|+|-|.|-|-++-+-
T Consensus 102 ~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyva--iQAVLtLYAQGL------~tGvVvDSGDGVTHi~PVy------ 167 (389)
T KOG0677|consen 102 CKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVA--IQAVLTLYAQGL------LTGVVVDSGDGVTHIVPVY------ 167 (389)
T ss_pred CeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEeh--HHHHHHHHHhcc------cceEEEecCCCeeEEeeee------
Confidence 3678999998888888888776 667788765442 233333354332 2348999999988876551
Q ss_pred cccCeeeecCeEEEEEeccCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCC------
Q 003784 241 KVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSAN------ 314 (795)
Q Consensus 241 ~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~------ 314 (795)
.+ +..-.-...-.+.|+++++-|.+.+..+= +...-..+ .+..+..|+.|..-
T Consensus 168 --------e~-~~l~HLtrRldvAGRdiTryLi~LLl~rG-----YafN~tAD-------FETVR~iKEKLCYisYd~e~ 226 (389)
T KOG0677|consen 168 --------EG-FVLPHLTRRLDVAGRDITRYLIKLLLRRG-----YAFNHTAD-------FETVREIKEKLCYISYDLEL 226 (389)
T ss_pred --------cc-eehhhhhhhccccchhHHHHHHHHHHhhc-----cccccccc-------hHHHHHHHhhheeEeechhh
Confidence 11 11111223346789999999998887541 32222222 12333445544321
Q ss_pred -----CceeEEEee--cccCcceEEEeeHHHHH---HHHHHHH-----HHHHHHHHHHHHHCCCC--CCCccEEEEecCc
Q 003784 315 -----TMAPISVES--LYVDIDFRSSITRQKFE---ELCEDLW-----ERSLVPLREVLNYSGLK--MDEIYAVELIGGG 377 (795)
Q Consensus 315 -----~~~~i~i~~--l~~~~d~~~~itr~efe---~l~~~~~-----~~i~~~i~~~l~~a~~~--~~~i~~V~LvGG~ 377 (795)
-++++-+++ |.+|. .+++--+.|| .+++|.+ ..+.+++-.+++.+.+. ..--.+|+|.||+
T Consensus 227 e~kLalETTvLv~~YtLPDGR--vIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGs 304 (389)
T KOG0677|consen 227 EQKLALETTVLVESYTLPDGR--VIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGS 304 (389)
T ss_pred hhHhhhhheeeeeeeecCCCc--EEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCc
Confidence 123333332 23343 3356566664 4666632 23566677777776553 2234689999999
Q ss_pred cCCHHHHHHHHHHh
Q 003784 378 TRVPKLQAKLQEYL 391 (795)
Q Consensus 378 sriP~v~~~l~~~f 391 (795)
+.-|.+-..|++.+
T Consensus 305 tMYPGLPSRLEkEl 318 (389)
T KOG0677|consen 305 TMYPGLPSRLEKEL 318 (389)
T ss_pred ccCCCCcHHHHHHH
Confidence 99999888887654
No 66
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=95.85 E-value=0.41 Score=53.20 Aligned_cols=84 Identities=17% Similarity=0.140 Sum_probs=48.9
Q ss_pred ceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHH-HHhCCCccCCCCCcchhhH
Q 003784 329 DFRSSITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQ-EYLGRTELDRHLDADEAIV 407 (795)
Q Consensus 329 d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~-~~f~~~~i~~~~n~deaVa 407 (795)
.-.+.||..+++++... -.-+..-++-.|++++++.++|+.|+|.||++..=-+.+.+. -+++.....+-.-.-.++-
T Consensus 290 ~~~i~itq~DIr~~qlA-KaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~iGLlP~~~~~kv~~~GN~al 368 (412)
T PF14574_consen 290 GDDIYITQKDIREFQLA-KAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIRIGLLPDVPAEKVRFVGNAAL 368 (412)
T ss_dssp SS-EEEEHHHHHHHHHH-HHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHHTTSS--S-GGGEEEEC-HHH
T ss_pred CCCEEEeHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhhcCCCCCccccCEEEECcHHH
Confidence 34569999999876432 223556677788899999999999999999998877777765 2333221111111223566
Q ss_pred hhHHHH
Q 003784 408 LGASLL 413 (795)
Q Consensus 408 ~GAa~~ 413 (795)
.||.+.
T Consensus 369 ~GA~~~ 374 (412)
T PF14574_consen 369 AGARMA 374 (412)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 676654
No 67
>PRK15027 xylulokinase; Provisional
Probab=95.54 E-value=0.034 Score=64.10 Aligned_cols=84 Identities=23% Similarity=0.266 Sum_probs=58.7
Q ss_pred EeeHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHH
Q 003784 333 SITRQKFEELCE-DLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGAS 411 (795)
Q Consensus 333 ~itr~efe~l~~-~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa 411 (795)
.-+|.+|-..+- .+.-.+...+ +.++..+. .++.|+++||+++++...+++.+.||. ++....+.+++.++|||
T Consensus 355 ~~~~~~l~rAvlEgia~~~~~~~-~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~-pv~~~~~~~~~~a~GaA 429 (484)
T PRK15027 355 QHGPNELARAVLEGVGYALADGM-DVVHACGI---KPQSVTLIGGGARSEYWRQMLADISGQ-QLDYRTGGDVGPALGAA 429 (484)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHhCC-eEEeecCCCcchHHHHH
Confidence 345666655443 3333333333 34454443 477899999999999999999999996 66455566778999999
Q ss_pred HHHHHhcCCc
Q 003784 412 LLAANLSDGI 421 (795)
Q Consensus 412 ~~aa~ls~~~ 421 (795)
+.|+.-.+.+
T Consensus 430 ~lA~~~~G~~ 439 (484)
T PRK15027 430 RLAQIAANPE 439 (484)
T ss_pred HHHHHhcCCc
Confidence 9998765543
No 68
>PLN02669 xylulokinase
Probab=95.36 E-value=0.05 Score=63.63 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=52.3
Q ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHH
Q 003784 334 ITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLL 413 (795)
Q Consensus 334 itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~ 413 (795)
.+|.++ ++.+++.+.=.++..++..+.. ..++.|+++||+|+.+.+.+.+.+.||. ++.. ++..++.|+|||+.
T Consensus 416 ~~~~~~---~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVlg~-pV~~-~~~~ea~alGAA~~ 489 (556)
T PLN02669 416 FDPPSE---VRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIFGC-DVYT-VQRPDSASLGAALR 489 (556)
T ss_pred CCHHHH---HHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHcCC-CeEe-cCCCCchHHHHHHH
Confidence 345553 3333333333333333333322 3578999999999999999999999996 5544 34457899999999
Q ss_pred HHH
Q 003784 414 AAN 416 (795)
Q Consensus 414 aa~ 416 (795)
|+.
T Consensus 490 A~~ 492 (556)
T PLN02669 490 AAH 492 (556)
T ss_pred HHH
Confidence 986
No 69
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=95.12 E-value=0.066 Score=62.60 Aligned_cols=86 Identities=16% Similarity=0.154 Sum_probs=61.5
Q ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHH
Q 003784 333 SITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASL 412 (795)
Q Consensus 333 ~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~ 412 (795)
.-+|.++..++..+++.+.=.++.+++...-....++.|.++||+++++...+.+.+++|. ++... +..|+.++|||+
T Consensus 409 ~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~-pV~~~-~~~e~~alGaA~ 486 (541)
T TIGR01315 409 DRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADACDM-PVLIP-YVNEAVLHGAAM 486 (541)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHHCC-eeEec-ChhHHHHHHHHH
Confidence 3357677777777777665555555443321112478899999999999999999999986 66444 445688999999
Q ss_pred HHHHhcCC
Q 003784 413 LAANLSDG 420 (795)
Q Consensus 413 ~aa~ls~~ 420 (795)
.|+.-.+.
T Consensus 487 lA~~~~G~ 494 (541)
T TIGR01315 487 LGAKAAGT 494 (541)
T ss_pred HHHHhcCc
Confidence 99865543
No 70
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=94.92 E-value=0.089 Score=56.14 Aligned_cols=69 Identities=23% Similarity=0.222 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHH
Q 003784 342 LCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLL 413 (795)
Q Consensus 342 l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~ 413 (795)
+++-..+++.+.|++.....+..+.+. .++.+||.+ |++-..+.+.+|-..+..+..+.-+-|.||++-
T Consensus 216 i~~~~~~~m~~~i~~~~~~~g~~~~~~-~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~a 284 (290)
T PF01968_consen 216 IVRIANENMADAIREVSVERGYDPRDF-PLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAVA 284 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--EEEE---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcccc-ccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 344455556666666655556554442 245556665 778888888888777766667788999999853
No 71
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=94.71 E-value=0.35 Score=54.70 Aligned_cols=74 Identities=24% Similarity=0.302 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHHHhcCCcc
Q 003784 344 EDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGIK 422 (795)
Q Consensus 344 ~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~ls~~~~ 422 (795)
+-+.-++...|+..-...+ ..|+.+.+.||.|+.|.+.+.+.+.+|. ++..+.+.|. ++.|||+.|+..++.+.
T Consensus 394 eai~fqtr~Il~am~~~~~---~~i~~L~~~GG~s~N~ll~Q~~ADi~g~-pv~~p~~~e~-~~~GaA~l~~~a~~~~~ 467 (516)
T KOG2517|consen 394 EAIAFQTREILEAMERDGG---HPISTLRVCGGLSKNPLLMQLQADILGL-PVVRPQDVEA-VALGAAMLAGAASGKWS 467 (516)
T ss_pred HHHHHHHHHHHHHHHHhcC---CCcceeeeccccccCHHHHHHHHHHhCC-ccccccchhH-HHHHHHHHHHhhcCCcc
Confidence 3334444444443333333 4677899999999999999999999995 7777878776 99999999998887543
No 72
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=94.45 E-value=0.17 Score=46.36 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=26.1
Q ss_pred EEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCCCCc--hHHHH--HHHHHH
Q 003784 218 VVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELG--GQNME--LRLVEY 275 (795)
Q Consensus 218 vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~lG--G~~~D--~~l~~~ 275 (795)
|+++|+|++++.+.+++.. ..+.+++++.+..+..| |..+. +.+.+-
T Consensus 1 i~~iDiGs~~~~~~i~~~~-----------~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~ 51 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDG-----------SDGYIRVLGVGEVPSKGIKGGHITDIEDISKA 51 (120)
T ss_dssp EEEEEE-SSSEEEEEEETT-----------EEEEEEEES----------HHHHH--HHHHHH
T ss_pred CEEEEcCCCcEEEEEEEeC-----------CCCcEEEEEEecccccccCCCEEEEHHHHHHH
Confidence 6899999999999999642 24556777665443333 55555 444433
No 73
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=94.38 E-value=0.12 Score=59.48 Aligned_cols=53 Identities=32% Similarity=0.518 Sum_probs=44.1
Q ss_pred CccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHHHhcCCc
Q 003784 367 EIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGI 421 (795)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~ls~~~ 421 (795)
.++.|.++||+++.+.+.+++.+.||. ++.. ....|+.++|||+.|+.-.+.+
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~g~-pv~~-~~~~e~~a~GaA~~a~~~~g~~ 442 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIFGT-PVDV-PEGEEGPALGAAILAAWALGEK 442 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHhCC-ceee-cCCCcchHHHHHHHHHHhcCCC
Confidence 478899999999999999999999986 5543 3466799999999998765533
No 74
>PRK00047 glpK glycerol kinase; Provisional
Probab=94.35 E-value=0.11 Score=60.08 Aligned_cols=53 Identities=21% Similarity=0.179 Sum_probs=43.6
Q ss_pred CccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHHHhcCCc
Q 003784 367 EIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGI 421 (795)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~ls~~~ 421 (795)
.++.|.++||++++|...+++.+.||. ++. ..+..|+.++|||+.|+.-.+.+
T Consensus 403 ~~~~i~~~GGga~s~~w~Qi~ADvlg~-pV~-~~~~~e~~a~GaA~~A~~~~G~~ 455 (498)
T PRK00047 403 RLKELRVDGGAVANNFLMQFQADILGV-PVE-RPVVAETTALGAAYLAGLAVGFW 455 (498)
T ss_pred CCceEEEecCcccCHHHHHHHHHhhCC-eeE-ecCcccchHHHHHHHHhhhcCcC
Confidence 467899999999999999999999995 554 44556799999999998755433
No 75
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=94.19 E-value=0.11 Score=60.07 Aligned_cols=81 Identities=23% Similarity=0.209 Sum_probs=54.8
Q ss_pred eHHHHHHHH-HHHHHHHHHHHHHHHHHC-CCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHH
Q 003784 335 TRQKFEELC-EDLWERSLVPLREVLNYS-GLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASL 412 (795)
Q Consensus 335 tr~efe~l~-~~~~~~i~~~i~~~l~~a-~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~ 412 (795)
+|.++-..+ +.+.-.+...+ +.|+.. +. .++.|.++||+++.+...+++.+.||. ++.. .+..|+.|+|||+
T Consensus 369 ~~~~l~rAvlEgia~~~~~~~-~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADv~g~-pv~~-~~~~e~~alGaA~ 442 (493)
T TIGR01311 369 TKAHIARAALEAIAFQTRDVL-EAMEKDAGV---EITKLRVDGGMTNNNLLMQFQADILGV-PVVR-PKVTETTALGAAY 442 (493)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHHhcCC---CCceEEEecccccCHHHHHHHHHhcCC-eeEe-cCCCcchHHHHHH
Confidence 455554433 33333333333 233322 33 478899999999999999999999986 5543 4556789999999
Q ss_pred HHHHhcCCc
Q 003784 413 LAANLSDGI 421 (795)
Q Consensus 413 ~aa~ls~~~ 421 (795)
.|+.-.+.+
T Consensus 443 ~a~~~~G~~ 451 (493)
T TIGR01311 443 AAGLAVGYW 451 (493)
T ss_pred HHHhhcCcC
Confidence 998755433
No 76
>PRK04123 ribulokinase; Provisional
Probab=94.15 E-value=0.12 Score=60.73 Aligned_cols=51 Identities=25% Similarity=0.357 Sum_probs=42.5
Q ss_pred CccEEEEecCc-cCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHHHhcC
Q 003784 367 EIYAVELIGGG-TRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSD 419 (795)
Q Consensus 367 ~i~~V~LvGG~-sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~ls~ 419 (795)
.++.|.++||+ ++.+.+.+++.+.||. +|. .....|+.++|||+.|+.-.+
T Consensus 438 ~~~~i~~~GGg~s~s~~w~Qi~ADv~g~-pV~-~~~~~e~~alGaA~lA~~~~G 489 (548)
T PRK04123 438 PVEEVIAAGGIARKNPVLMQIYADVLNR-PIQ-VVASDQCPALGAAIFAAVAAG 489 (548)
T ss_pred CcceEEEeCCCcccCHHHHHHHHHhcCC-ceE-ecCccccchHHHHHHHHHHhc
Confidence 47789999999 9999999999999985 553 334567999999999987544
No 77
>PLN02295 glycerol kinase
Probab=94.14 E-value=0.19 Score=58.30 Aligned_cols=53 Identities=21% Similarity=0.184 Sum_probs=43.8
Q ss_pred CccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHHHhcCCc
Q 003784 367 EIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGI 421 (795)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~ls~~~ 421 (795)
.++.|.++||+++.|...+++.+.||. ++. ..+..|+.|+|||+.|+.-.+.+
T Consensus 412 ~~~~i~~~GGga~s~~w~Qi~ADv~g~-pV~-~~~~~e~~alGaA~~A~~~~G~~ 464 (512)
T PLN02295 412 GLFLLRVDGGATANNLLMQIQADLLGS-PVV-RPADIETTALGAAYAAGLAVGLW 464 (512)
T ss_pred CcceEEEeccchhCHHHHHHHHHhcCC-ceE-ecCccccHHHHHHHHHHhhcCcC
Confidence 578899999999999999999999996 553 44556899999999998755543
No 78
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=94.05 E-value=0.14 Score=59.34 Aligned_cols=53 Identities=26% Similarity=0.297 Sum_probs=43.3
Q ss_pred CccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHHHhcCCc
Q 003784 367 EIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGI 421 (795)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~ls~~~ 421 (795)
.++.|.++||+++.+...+.+.+.||. ++. .....|+.++|||+.|+.-.+.+
T Consensus 406 ~~~~i~~~GG~a~s~~w~Qi~Adv~g~-pV~-~~~~~e~~alGaAl~aa~a~G~~ 458 (504)
T PTZ00294 406 ELNSLRVDGGLTKNKLLMQFQADILGK-DIV-VPEMAETTALGAALLAGLAVGVW 458 (504)
T ss_pred CcceEEEecccccCHHHHHHHHHHhCC-ceE-ecCcccchHHHHHHHHHhhcCcc
Confidence 377899999999999999999999986 554 33456789999999998755543
No 79
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=94.03 E-value=0.14 Score=59.75 Aligned_cols=82 Identities=18% Similarity=0.143 Sum_probs=55.5
Q ss_pred eeHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCCccEEEEecCc-cCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHH
Q 003784 334 ITRQKFEELCED-LWERSLVPLREVLNYSGLKMDEIYAVELIGGG-TRVPKLQAKLQEYLGRTELDRHLDADEAIVLGAS 411 (795)
Q Consensus 334 itr~efe~l~~~-~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~-sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa 411 (795)
-+|.+|-+.+-+ +.-.+... -+.|+..+. .++.|.++||+ ++.+.+.+.+.+.||. +|....+ .|+.++|||
T Consensus 405 ~~~~~~~RAvlEgia~~~~~~-l~~l~~~g~---~~~~i~~~GGg~a~s~~w~Qi~Adv~g~-pV~~~~~-~e~~a~GaA 478 (536)
T TIGR01234 405 TDAPLLYRALIEATAFGTRMI-METFTDSGV---PVEELMAAGGIARKNPVIMQIYADVTNR-PLQIVAS-DQAPALGAA 478 (536)
T ss_pred CCHHHHHHHHHHHHHHHHHHH-HHHHHhcCC---CcceEEEeCCccccCHHHHHHHHHhhCC-eeEeccC-CcchhHHHH
Confidence 356665444332 22233333 334444443 57889999999 9999999999999985 6644444 568899999
Q ss_pred HHHHHhcCCc
Q 003784 412 LLAANLSDGI 421 (795)
Q Consensus 412 ~~aa~ls~~~ 421 (795)
+.|+.-.+.+
T Consensus 479 ~lA~~~~G~~ 488 (536)
T TIGR01234 479 IFAAVAAGVY 488 (536)
T ss_pred HHHHHHcCCc
Confidence 9998755533
No 80
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=93.99 E-value=0.2 Score=57.41 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=42.6
Q ss_pred CccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHHHhcCC
Q 003784 367 EIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDG 420 (795)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~ls~~ 420 (795)
.++.|.++||++++|...+.+.+.||. ++... +..|+.++|||+.|+.-.+.
T Consensus 393 ~~~~i~~~GGga~s~~w~Qi~Adv~g~-pV~~~-~~~e~~~lGaA~~a~~a~G~ 444 (465)
T TIGR02628 393 KASELLLVGGGSKNTLWNQIRANMLDI-PVKVV-DDAETTVAGAAMFGFYGVGE 444 (465)
T ss_pred CcceEEEecCccCCHHHHHHhhhhcCC-eeEec-cCCcchHHHHHHHHHHhcCc
Confidence 467899999999999999999999995 56433 44578899999999875543
No 81
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=93.82 E-value=1 Score=50.73 Aligned_cols=82 Identities=23% Similarity=0.291 Sum_probs=59.0
Q ss_pred eHHHHHHHHHHHHHHH---HHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHH
Q 003784 335 TRQKFEELCEDLWERS---LVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGAS 411 (795)
Q Consensus 335 tr~efe~l~~~~~~~i---~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa 411 (795)
+.+.+-.+..-.+.-+ .+.|-+++++.|+ .|+.|++.||-.+.|.+.+.+....|. ++.. ...++++++|+|
T Consensus 399 ~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~---~Id~l~~sGG~~KN~llmql~aDvtg~-~v~i-~~s~~a~llGsA 473 (544)
T COG1069 399 SPESLALLYRALLEATAFGTRAIIETFEDQGI---AIDTLFASGGIRKNPLLMQLYADVTGR-PVVI-PASDQAVLLGAA 473 (544)
T ss_pred CcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCC---eeeEEEecCCcccCHHHHHHHHHhcCC-eEEe-ecccchhhhHHH
Confidence 4444444444433333 3455566777776 588999999999999999999999986 3433 367889999999
Q ss_pred HHHHHhcCCc
Q 003784 412 LLAANLSDGI 421 (795)
Q Consensus 412 ~~aa~ls~~~ 421 (795)
+.|+.-.+.+
T Consensus 474 m~~avAag~~ 483 (544)
T COG1069 474 MFAAVAAGVH 483 (544)
T ss_pred HHHHHHhccC
Confidence 9998766543
No 82
>PRK10331 L-fuculokinase; Provisional
Probab=93.78 E-value=0.16 Score=58.43 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=43.3
Q ss_pred CccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHHHhcCCc
Q 003784 367 EIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGI 421 (795)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~ls~~~ 421 (795)
.++.|.++||+++.|...+.+.+.||. ++... ...|+.++|||+.|+.-.+.+
T Consensus 389 ~~~~i~~~GGga~s~~w~Qi~Advlg~-pV~~~-~~~e~~a~GaA~la~~~~G~~ 441 (470)
T PRK10331 389 KASELLLVGGGSRNALWNQIKANMLDI-PIKVL-DDAETTVAGAAMFGWYGVGEF 441 (470)
T ss_pred CCceEEEEcccccCHHHHHHHHHhcCC-eeEec-CcccchHHHHHHHHHHhcCCC
Confidence 578899999999999999999999996 55433 455789999999998755433
No 83
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=93.56 E-value=0.18 Score=57.60 Aligned_cols=52 Identities=23% Similarity=0.206 Sum_probs=42.8
Q ss_pred CccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHHHhcCCc
Q 003784 367 EIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGI 421 (795)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~ls~~~ 421 (795)
.++.|.++||+++.++..+.+.+.+|. ++.. .. .|+.++|||+.|+.-.+.+
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvlg~-pV~~-~~-~e~~a~GaA~~a~~~~G~~ 438 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADACGI-RVIA-GP-VEASTLGNIGVQLMALDEI 438 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHhCC-ceEc-CC-chHHHHHHHHHHHHhcCCc
Confidence 477899999999999999999999996 5543 23 6799999999998755443
No 84
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=93.51 E-value=0.24 Score=54.06 Aligned_cols=55 Identities=18% Similarity=0.301 Sum_probs=46.1
Q ss_pred HCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHHH
Q 003784 360 YSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAAN 416 (795)
Q Consensus 360 ~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~ 416 (795)
..+........|+.+||.||...|-+.|.+.||. ++. .++..++++.|+|+.|+.
T Consensus 435 ~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~a-pVy-~~~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 435 PLGFKSNPPTRILVTGGASRNEAILQIIADVFGA-PVY-TIEGPNSAALGGAYRAAY 489 (545)
T ss_pred cccCCCCCCceEEEecCccccHHHHHHHHHHhCC-CeE-eecCCchhhHHHHHHHHH
Confidence 3456666778999999999999999999999996 443 347889999999999875
No 85
>PRK10854 exopolyphosphatase; Provisional
Probab=93.29 E-value=1.2 Score=51.78 Aligned_cols=56 Identities=14% Similarity=0.246 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhCCceeeecchhHHHHHHh-hhcCCCCCCCcEEEEEEecCccceeeEEE
Q 003784 177 RKGLMQAAELAGMNVLSLVNEHSGAALQY-GIDKDFSNESRHVVFYDMGATTTYAALVY 234 (795)
Q Consensus 177 R~al~~Aa~~AGl~~~~li~Ep~AAAl~y-~~~~~~~~~~~~vlV~D~GggT~dvsvv~ 234 (795)
...+.++-+..|+++ .+|+...=|.+.| +....+.. .+..+|+|+|||+|.+++++
T Consensus 99 ~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~~-~~~~lvvDIGGGStEl~~~~ 155 (513)
T PRK10854 99 TDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPE-KGRKLVIDIGGGSTELVIGE 155 (513)
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccCC-CCCeEEEEeCCCeEEEEEec
Confidence 334445555679997 7888777777666 44433332 35689999999999999983
No 86
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=93.11 E-value=0.23 Score=57.69 Aligned_cols=82 Identities=13% Similarity=0.150 Sum_probs=54.8
Q ss_pred eHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHH
Q 003784 335 TRQKFEEL-CEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLL 413 (795)
Q Consensus 335 tr~efe~l-~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~ 413 (795)
+|.+|-.. ++.+.-.+...+....+..+. .++.|.++||+++.+...+++.+.||. ++... +..|+.++|||+.
T Consensus 371 ~~~~l~rAvlEgia~~~~~~~~~~~~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~-pv~~~-~~~e~~a~GaA~l 445 (505)
T TIGR01314 371 KKEHMIRAALEGVIYNLYTVALALVEVMGD---PLNMIQATGGFASSEVWRQMMSDIFEQ-EIVVP-ESYESSCLGACIL 445 (505)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEecCcccCHHHHHHHHHHcCC-eeEec-CCCCcchHHHHHH
Confidence 45554432 233333344444433332333 578999999999999999999999996 55433 3456899999999
Q ss_pred HHHhcCCc
Q 003784 414 AANLSDGI 421 (795)
Q Consensus 414 aa~ls~~~ 421 (795)
|+.-.+.+
T Consensus 446 a~~~~G~~ 453 (505)
T TIGR01314 446 GLKALGLI 453 (505)
T ss_pred HHHhcCcc
Confidence 98755543
No 87
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=93.07 E-value=0.4 Score=55.03 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=42.4
Q ss_pred CccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHHHhcCCc
Q 003784 367 EIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGI 421 (795)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~ls~~~ 421 (795)
.++.|.++||+++.+...+++.+.+|. ++... . .|+.++|||+.|+.-.+.+
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvlg~-pV~~~-~-~ea~alGaa~~a~~a~G~~ 426 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADACGI-RVIAG-P-VEASTLGNIGIQLMTLDEL 426 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHhCC-CeeeC-C-hhHHHHHHHHHHHHHcCCc
Confidence 467899999999999999999999996 56433 2 3799999999988755543
No 88
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=92.53 E-value=2.2 Score=47.87 Aligned_cols=122 Identities=11% Similarity=0.087 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHHHH-HHHhCCceeeecchhHHHHHHhhhcCCCCCCCcE
Q 003784 139 EELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQA-AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRH 217 (795)
Q Consensus 139 eel~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~A-a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~ 217 (795)
=++...+|.|+....--....-..-+++|=+..=...+|+.|.+- .+..|++-+.+=-+.- ++|.+... ......
T Consensus 94 wel~E~ilDY~F~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDsl---fS~~hN~~-~~~~~~ 169 (645)
T KOG0681|consen 94 WELMEQILDYIFGKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSL---FSFYHNYG-KSSNKS 169 (645)
T ss_pred HHHHHHHHHHHHHhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhH---HHHhhccC-cccCcc
Confidence 345555665554432211111123477887776666788888776 4556887654322211 11111111 122336
Q ss_pred EEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCCCCchHHHHHHHHHHHHHH
Q 003784 218 VVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADE 279 (795)
Q Consensus 218 vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~ 279 (795)
-||+++|..+|.|-.+- +|... +....-.++||...-.-|.+.+..+
T Consensus 170 ~liis~g~~~T~vipvl--------------dG~~i-l~~~kRiN~GG~qa~dYL~~Lmq~K 216 (645)
T KOG0681|consen 170 GLIISMGHSATHVIPVL--------------DGRLI-LKDVKRINWGGYQAGDYLSRLMQLK 216 (645)
T ss_pred eEEEecCCCcceeEEEe--------------cCchh-hhcceeeccCcchHHHHHHHHHhcc
Confidence 89999999999876661 33322 2233445899988865555555443
No 89
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=92.43 E-value=0.3 Score=56.82 Aligned_cols=52 Identities=19% Similarity=0.170 Sum_probs=42.7
Q ss_pred CccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHHHhcCC
Q 003784 367 EIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDG 420 (795)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~ls~~ 420 (795)
.++.|.++||+++.+...+++.+.||. ++... ...|+.++|||+.|+.-.+.
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvlg~-pV~~~-~~~e~~alGaA~lA~~~~G~ 460 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVTGL-PVKVP-VVKEATALGCAIAAGVGAGI 460 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhcCC-eeEEe-cccCchHHHHHHHHHHHhCC
Confidence 478899999999999999999999996 55444 34568899999999875543
No 90
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=92.25 E-value=0.71 Score=48.43 Aligned_cols=71 Identities=24% Similarity=0.164 Sum_probs=38.6
Q ss_pred cEEEecCCCCCHHHHHHHHHHHHHhCCceeeec---chhHHHHHHhhhcCCCC-CCCcEEEEEEecCccceeeEEE
Q 003784 163 DFVISVPPYFGQAERKGLMQAAELAGMNVLSLV---NEHSGAALQYGIDKDFS-NESRHVVFYDMGATTTYAALVY 234 (795)
Q Consensus 163 ~~VItVPa~f~~~qR~al~~Aa~~AGl~~~~li---~Ep~AAAl~y~~~~~~~-~~~~~vlV~D~GggT~dvsvv~ 234 (795)
.++||=-..=..+.|.++..-...||==++.-- -|+.-|.-..+.. .++ +....|+=+|+||||+..+++.
T Consensus 89 AvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~-t~Seqr~t~v~NlDIGGGTtN~slFD 163 (473)
T COG4819 89 AVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQ-TLSEQRLTRVLNLDIGGGTTNYSLFD 163 (473)
T ss_pred cEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCcccc-chhhhhceEEEEEeccCCccceeeec
Confidence 356666655566667766555555553222110 1222221111111 122 2346789999999999999983
No 91
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=92.21 E-value=2 Score=45.27 Aligned_cols=47 Identities=17% Similarity=-0.022 Sum_probs=37.9
Q ss_pred CCccEEEEecC-ccCCHHHHHHHHHHhCC--CccCCCCCcchhhHhhHHH
Q 003784 366 DEIYAVELIGG-GTRVPKLQAKLQEYLGR--TELDRHLDADEAIVLGASL 412 (795)
Q Consensus 366 ~~i~~V~LvGG-~sriP~v~~~l~~~f~~--~~i~~~~n~deaVa~GAa~ 412 (795)
..+..|+++|| .+..|.+++.+...+.- .++..+.+....+|+||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 35778999999 67799999999887642 2455677888999999985
No 92
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=91.06 E-value=0.93 Score=52.51 Aligned_cols=80 Identities=28% Similarity=0.260 Sum_probs=50.9
Q ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHH
Q 003784 334 ITRQKFEELCEDLWERSLVPLREVLNYS-GLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASL 412 (795)
Q Consensus 334 itr~efe~l~~~~~~~i~~~i~~~l~~a-~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~ 412 (795)
-+|.+|-+.+-+-+.-.....-+.|.+. +. .++.|.++||++|.++..+++.+.||. ++..+ ...|+.+.|+|+
T Consensus 370 ~~~~~l~ravlEgva~~l~~~~~~l~~~~g~---~~~~i~~~GGgars~~w~Qi~Ad~~g~-~v~~~-~~~e~~a~g~A~ 444 (502)
T COG1070 370 HTRAHLARAVLEGVAFALADGLEALEELGGK---PPSRVRVVGGGARSPLWLQILADALGL-PVVVP-EVEEAGALGGAA 444 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CccEEEEECCcccCHHHHHHHHHHcCC-eeEec-CcccchHHHHHH
Confidence 3666665544333322333333444443 43 566899999999999999999999996 55433 345666666666
Q ss_pred HHHHhc
Q 003784 413 LAANLS 418 (795)
Q Consensus 413 ~aa~ls 418 (795)
.++.-.
T Consensus 445 ~~~~~~ 450 (502)
T COG1070 445 LAAAAL 450 (502)
T ss_pred HHHHHh
Confidence 655544
No 93
>PRK09557 fructokinase; Reviewed
Probab=91.01 E-value=25 Score=37.64 Aligned_cols=44 Identities=16% Similarity=0.173 Sum_probs=28.7
Q ss_pred hCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEE
Q 003784 187 AGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALV 233 (795)
Q Consensus 187 AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv 233 (795)
.|++ +.+.|+..|+|++-..... ....++++++.+|.| +-.+++
T Consensus 96 ~~~p-v~~~NDa~aaA~aE~~~g~-~~~~~~~~~l~igtG-iG~giv 139 (301)
T PRK09557 96 LNRE-VRLANDANCLAVSEAVDGA-AAGKQTVFAVIIGTG-CGAGVA 139 (301)
T ss_pred HCCC-EEEccchhHHHHHHHHhcc-cCCCCcEEEEEEccc-eEEEEE
Confidence 4776 4699999999988544321 123467888888865 444554
No 94
>PTZ00107 hexokinase; Provisional
Probab=90.67 E-value=10 Score=43.14 Aligned_cols=81 Identities=22% Similarity=0.241 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HCCCCCCCccEEEEecCc--cCCHHHHHHHHHHh----CCC-ccCCCCCcch
Q 003784 336 RQKFEELCEDLWERSLVPLREVLN----YSGLKMDEIYAVELIGGG--TRVPKLQAKLQEYL----GRT-ELDRHLDADE 404 (795)
Q Consensus 336 r~efe~l~~~~~~~i~~~i~~~l~----~a~~~~~~i~~V~LvGG~--sriP~v~~~l~~~f----~~~-~i~~~~n~de 404 (795)
+.-+..+|+-+..|...++--.+. +.+.. .-..++-+-|| -..|..++.+.+.+ +.. .-..-.-.+.
T Consensus 370 ~~~lr~i~~~V~~RAA~L~Aa~iaail~k~~~~--~~~~~VgvDGSv~~~~p~f~~~~~~~l~~ll~~~~~~v~l~~a~D 447 (464)
T PTZ00107 370 LYTIRKICELVRGRAAQLAAAFIAAPAKKTRTV--QGKATVAIDGSVYVKNPWFRRLLQEYINSILGPDAGNVVFYLADD 447 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCceEEEEeCcceecCccHHHHHHHHHHHHhCCCCCcEEEEEccC
Confidence 344456667777776655544433 22221 12244555555 34676666666655 332 1111223566
Q ss_pred hhHhhHHHHHHHhc
Q 003784 405 AIVLGASLLAANLS 418 (795)
Q Consensus 405 aVa~GAa~~aa~ls 418 (795)
..-.|||+.||...
T Consensus 448 GSg~GAAl~AA~~~ 461 (464)
T PTZ00107 448 GSGKGAAIIAAMVA 461 (464)
T ss_pred chHHHHHHHHHHhc
Confidence 88999999999754
No 95
>PRK09698 D-allose kinase; Provisional
Probab=89.85 E-value=31 Score=36.88 Aligned_cols=43 Identities=9% Similarity=-0.093 Sum_probs=28.7
Q ss_pred hCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEE
Q 003784 187 AGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALV 233 (795)
Q Consensus 187 AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv 233 (795)
.|++ +.+.|+..|+|++-..... ....+++++.+|.| .-.+++
T Consensus 104 ~~~p-v~v~NDa~aaa~~E~~~~~--~~~~~~~~v~lgtG-IG~giv 146 (302)
T PRK09698 104 LNCP-VFFSRDVNLQLLWDVKENN--LTQQLVLGAYLGTG-MGFAVW 146 (302)
T ss_pred hCCC-EEEcchHhHHHHHHHHhcC--CCCceEEEEEecCc-eEEEEE
Confidence 4776 4799999999886543321 22357888889876 444555
No 96
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=88.78 E-value=6.4 Score=41.49 Aligned_cols=99 Identities=13% Similarity=0.109 Sum_probs=55.7
Q ss_pred CcEEEecCCCCCHH-HHHHHHHHHHHhCCceeeecchhHHHHHHhhh-cCC----CCCCCcEEEEEEecCccceeeEEEE
Q 003784 162 KDFVISVPPYFGQA-ERKGLMQAAELAGMNVLSLVNEHSGAALQYGI-DKD----FSNESRHVVFYDMGATTTYAALVYF 235 (795)
Q Consensus 162 ~~~VItVPa~f~~~-qR~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~-~~~----~~~~~~~vlV~D~GggT~dvsvv~~ 235 (795)
..+|+|=|.+--+. |.....-..+.-+|.. +..-+.|+.+++.. .++ ........+|+|.|.+-|.+.-+-
T Consensus 94 ~~ivlTep~~~~psi~~~t~eilFEey~fd~--v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v- 170 (400)
T KOG0680|consen 94 HNIVLTEPCMTFPSIQEHTDEILFEEYQFDA--VLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVV- 170 (400)
T ss_pred ceEEEecccccccchhhhHHHHHHHHhccce--EeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhh-
Confidence 46899998765443 3333333345556653 45555555554431 111 112245899999999877654331
Q ss_pred eeccccccCeeeecCeEEEEEeccCCCCchHHHHHHHHHHHH
Q 003784 236 SAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFA 277 (795)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~ 277 (795)
.|+...+... -...||..++..|-+.+-
T Consensus 171 -------~g~~~~qaV~-------RiDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 171 -------KGIPYYQAVK-------RIDVGGKALTNLLKETIS 198 (400)
T ss_pred -------cCcchhhceE-------EeecchHHHHHHHHHHhh
Confidence 1112222222 227899999999888774
No 97
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=87.19 E-value=2.6 Score=44.83 Aligned_cols=53 Identities=17% Similarity=0.347 Sum_probs=34.3
Q ss_pred HHHHHHHhCCceeeecchhHHHHHHh-hhcCCCCCCCcEEEEEEecCccceeeEEE
Q 003784 180 LMQAAELAGMNVLSLVNEHSGAALQY-GIDKDFSNESRHVVFYDMGATTTYAALVY 234 (795)
Q Consensus 180 l~~Aa~~AGl~~~~li~Ep~AAAl~y-~~~~~~~~~~~~vlV~D~GggT~dvsvv~ 234 (795)
+...-+..|+++ .+|+...=|.+.| +....+ ......+++|+|||+|.+++++
T Consensus 77 ~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~~l-~~~~~~lviDIGGGStEl~~~~ 130 (285)
T PF02541_consen 77 LDRIKKETGIDI-EIISGEEEARLSFLGVLSSL-PPDKNGLVIDIGGGSTELILFE 130 (285)
T ss_dssp HHHHHHHHSS-E-EEE-HHHHHHHHHHHHHHHS-TTTSSEEEEEEESSEEEEEEEE
T ss_pred HHHHHHHhCCce-EEecHHHHHHHHHHHHHhhc-cccCCEEEEEECCCceEEEEEE
Confidence 334445569987 6777766666655 222233 2346789999999999999983
No 98
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=86.48 E-value=16 Score=39.54 Aligned_cols=71 Identities=23% Similarity=0.410 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCC---ccCCCCCc----chhhHhhHHHHHHHh
Q 003784 345 DLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRT---ELDRHLDA----DEAIVLGASLLAANL 417 (795)
Q Consensus 345 ~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~---~i~~~~n~----deaVa~GAa~~aa~l 417 (795)
.+++.+.+.|...+. ...+.+.|+|.|-.+|+|-+.+.+++.|+.. ++ ..+.+ -...|.|||+.|.-+
T Consensus 242 a~~E~i~k~V~~l~~----~~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v-~~l~~~~~~aKeaA~GaAiIA~gl 316 (343)
T PF07318_consen 242 AMIESIVKAVASLLA----SVPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKV-RKLEGLARKAKEAAQGAAIIANGL 316 (343)
T ss_pred HHHHHHHHHHHHHhc----ccCCCCEEEEeccccccHHHHHHHHHHHHhhcccce-eecccccccchhhhhhHHHHhhhh
Confidence 344444444443332 2246788999999999999988888777431 11 11122 234899999999877
Q ss_pred cCC
Q 003784 418 SDG 420 (795)
Q Consensus 418 s~~ 420 (795)
.+.
T Consensus 317 aGG 319 (343)
T PF07318_consen 317 AGG 319 (343)
T ss_pred hcc
Confidence 653
No 99
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=85.99 E-value=2.7 Score=44.28 Aligned_cols=70 Identities=21% Similarity=0.245 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHh----CCCccCCCCCcchhhHhhHHHHH
Q 003784 342 LCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYL----GRTELDRHLDADEAIVLGASLLA 414 (795)
Q Consensus 342 l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f----~~~~i~~~~n~deaVa~GAa~~a 414 (795)
+++...+.+.+.+...+.+....... |+|+||..+.+.+++.+.+.+ ...++..+..|....|.||+++|
T Consensus 198 Il~~a~~~la~~i~~~~~~~~~~~~~---v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 198 ILAEAADELAELIKAVLKRLGPEKEP---VVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTCCCCS---EEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCe---EEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 44555555566666666655443222 999999999977777664443 33244567788999999999986
No 100
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=85.18 E-value=58 Score=34.96 Aligned_cols=94 Identities=14% Similarity=0.198 Sum_probs=54.7
Q ss_pred cHHHHHHHHHHHHHHHHHhh--cCCCCCcEEEecCCCCCHHH------------HHHHHHHH-HHhCCceeeecchhHHH
Q 003784 137 SVEELLAMVLSYAVNLVDTH--AKLAVKDFVISVPPYFGQAE------------RKGLMQAA-ELAGMNVLSLVNEHSGA 201 (795)
Q Consensus 137 ~~eel~a~~L~~l~~~a~~~--~~~~~~~~VItVPa~f~~~q------------R~al~~Aa-~~AGl~~~~li~Ep~AA 201 (795)
++++++..+...+.+..... ...++..+.|++|...+... ...+.+.. +..|++ +.+.|+..|+
T Consensus 32 ~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~p-v~v~NDa~~~ 110 (318)
T TIGR00744 32 TPETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLP-VVVENDANAA 110 (318)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCC-EEEechHHHH
Confidence 56666666655555544432 12245667888887554211 11233333 334776 4699999999
Q ss_pred HHHhhhcCCCCCCCcEEEEEEecCccceeeEE
Q 003784 202 ALQYGIDKDFSNESRHVVFYDMGATTTYAALV 233 (795)
Q Consensus 202 Al~y~~~~~~~~~~~~vlV~D~GggT~dvsvv 233 (795)
|++-.+... ....++++++.+|.|- -.+++
T Consensus 111 alaE~~~g~-~~~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 111 ALGEYKKGA-GKGARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHHHHHhcc-cCCCCcEEEEEeCCcc-EEEEE
Confidence 987544321 1234678999999875 55555
No 101
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=84.63 E-value=4.3 Score=40.17 Aligned_cols=39 Identities=13% Similarity=0.094 Sum_probs=29.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCC
Q 003784 134 NNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFG 173 (795)
Q Consensus 134 ~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~ 173 (795)
....++ .++..++.+.+.++..++.++..+++++|...-
T Consensus 41 ~I~d~~-~~~~~I~~ai~~ae~~~~~~i~~V~v~i~g~~v 79 (187)
T smart00842 41 VIVDIE-AAARAIREAVEEAERMAGVKIDSVYVGISGRHL 79 (187)
T ss_pred EEECHH-HHHHHHHHHHHHHHHHhCCcccEEEEEEcCCce
Confidence 334444 447778888888888889889999999998653
No 102
>PRK14878 UGMP family protein; Provisional
Probab=84.40 E-value=66 Score=34.90 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=22.6
Q ss_pred CccEEEEecCccCCHHHHHHHHHHh
Q 003784 367 EIYAVELIGGGTRVPKLQAKLQEYL 391 (795)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f 391 (795)
.+..|+|.||-+...++++.+.+.+
T Consensus 241 g~~~vvlsGGVa~N~~L~~~l~~~~ 265 (323)
T PRK14878 241 GKKEVLLVGGVAANRRLREKLEIMA 265 (323)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHH
Confidence 3568999999999999999999977
No 103
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=84.21 E-value=4.4 Score=46.37 Aligned_cols=57 Identities=18% Similarity=0.272 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhCCceeeecchhHHHHHHh-hhcCCCCCCCcEEEEEEecCccceeeEEE
Q 003784 176 ERKGLMQAAELAGMNVLSLVNEHSGAALQY-GIDKDFSNESRHVVFYDMGATTTYAALVY 234 (795)
Q Consensus 176 qR~al~~Aa~~AGl~~~~li~Ep~AAAl~y-~~~~~~~~~~~~vlV~D~GggT~dvsvv~ 234 (795)
.-..+..+-+..|+++ .+|+.-+=|-+.| |.-..++. ....+|+|+|||+|.+++..
T Consensus 90 ~~eFl~rv~~~~G~~i-evIsGeeEArl~~lGv~~~~~~-~~~~lv~DIGGGStEl~~g~ 147 (492)
T COG0248 90 GDEFLARVEKELGLPI-EVISGEEEARLIYLGVASTLPR-KGDGLVIDIGGGSTELVLGD 147 (492)
T ss_pred HHHHHHHHHHHhCCce-EEeccHHHHHHHHHHHHhcCCC-CCCEEEEEecCCeEEEEEec
Confidence 3455777888889987 5666554444443 44444443 56799999999999999984
No 104
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=83.98 E-value=1.8 Score=49.88 Aligned_cols=57 Identities=21% Similarity=0.299 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhCCceeeecchhHHHHHHh-hhcCCCCCCCcEEEEEEecCccceeeEEE
Q 003784 176 ERKGLMQAAELAGMNVLSLVNEHSGAALQY-GIDKDFSNESRHVVFYDMGATTTYAALVY 234 (795)
Q Consensus 176 qR~al~~Aa~~AGl~~~~li~Ep~AAAl~y-~~~~~~~~~~~~vlV~D~GggT~dvsvv~ 234 (795)
....+.++-+..|+++ ++|+...=|.+.| +....++. .+..+|+|+|||+|.+++++
T Consensus 93 ~~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~l~~-~~~~lviDIGGGStEl~~~~ 150 (496)
T PRK11031 93 ADEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHTTGG-ADQRLVVDIGGASTELVTGT 150 (496)
T ss_pred HHHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhccCC-CCCEEEEEecCCeeeEEEec
Confidence 3444555666679997 6777777776666 34333332 24589999999999999983
No 105
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=83.38 E-value=11 Score=38.64 Aligned_cols=71 Identities=23% Similarity=0.265 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhcCCCCCcEEEecCCCCCHHH-HHHHHHHHHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEec
Q 003784 146 LSYAVNLVDTHAKLAVKDFVISVPPYFGQAE-RKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMG 224 (795)
Q Consensus 146 L~~l~~~a~~~~~~~~~~~VItVPa~f~~~q-R~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~G 224 (795)
..++.+.++...+.++ .|+++-..|...+ ....++.|. |+. +|.-.+... ..++..+++|+|
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ssEa~~~~~~vAA-aNW----------~Ata~~~~e----~~~dsci~VD~G 138 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSSEALKNPREVAA-ANW----------VATARFLAE----EIKDSCILVDMG 138 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcChhHhcCHHHHHH-hhh----------HHHHHHHHH----hcCCceEEEecC
Confidence 3456666677677665 8899999887642 111222211 111 010001111 124678999999
Q ss_pred CccceeeEE
Q 003784 225 ATTTYAALV 233 (795)
Q Consensus 225 ggT~dvsvv 233 (795)
+.|+|+--+
T Consensus 139 STTtDIIPi 147 (330)
T COG1548 139 STTTDIIPI 147 (330)
T ss_pred CcccceEee
Confidence 999998766
No 106
>PLN02666 5-oxoprolinase
Probab=82.86 E-value=16 Score=46.78 Aligned_cols=78 Identities=18% Similarity=0.232 Sum_probs=52.3
Q ss_pred EeeHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHH
Q 003784 333 SITRQKFEELCEDL-WERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGAS 411 (795)
Q Consensus 333 ~itr~efe~l~~~~-~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa 411 (795)
.++-++...-+..+ -..+.+.|+......|.++.+. .++..||++ |..--.|.+.+|-+.+..+.++.-.-|+|++
T Consensus 453 g~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~~-~l~afGGag--p~ha~~lA~~lgi~~vivP~~~gv~sA~G~~ 529 (1275)
T PLN02666 453 DMSVEEVALGFVRVANEAMCRPIRQLTEMKGYETANH-ALACFGGAG--PQHACAIARALGMSEVFVHRYCGILSAYGMG 529 (1275)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-eEEEecCcH--HHHHHHHHHHcCCCEEEeCCCccHHHHHHHH
Confidence 34455554444443 3455666677666677776653 344455554 7778889999998777788899989999998
Q ss_pred HH
Q 003784 412 LL 413 (795)
Q Consensus 412 ~~ 413 (795)
+.
T Consensus 530 ~a 531 (1275)
T PLN02666 530 LA 531 (1275)
T ss_pred hh
Confidence 53
No 107
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=82.86 E-value=1.8 Score=48.56 Aligned_cols=67 Identities=22% Similarity=0.219 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHCCCCCC--CccEEEEecCccCCHHHHHHHHHHhCC-------CccCCCCCcchhhHhhHHHHHHH
Q 003784 350 SLVPLREVLNYSGLKMD--EIYAVELIGGGTRVPKLQAKLQEYLGR-------TELDRHLDADEAIVLGASLLAAN 416 (795)
Q Consensus 350 i~~~i~~~l~~a~~~~~--~i~~V~LvGG~sriP~v~~~l~~~f~~-------~~i~~~~n~deaVa~GAa~~aa~ 416 (795)
+..++..+|.+.-.... -+..|+|+||+|.+|.+.+.|.+-+-. -.|....||-..+=+||+.+|+.
T Consensus 539 l~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 539 LAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred HHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 44555555554322211 278899999999999999999876522 14556778888899999999887
No 108
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=81.76 E-value=4.9 Score=44.16 Aligned_cols=70 Identities=27% Similarity=0.285 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCcc------CCCCCcchhhHhhHHHHHH
Q 003784 342 LCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTEL------DRHLDADEAIVLGASLLAA 415 (795)
Q Consensus 342 l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i------~~~~n~deaVa~GAa~~aa 415 (795)
++.-+.+-+...|-+.++.... +++.|+++||+.+.|++.+.|++.++..++ ..+.+.-||++. |++|.
T Consensus 262 ~~aTlt~~TA~sI~~~i~~~~~---~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aF--A~La~ 336 (364)
T PF03702_consen 262 ILATLTEFTAQSIADAIRRFPP---QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAF--AWLAY 336 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-T---T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCC---CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHH--HHHHH
Confidence 3333444444445555554432 378999999999999999999999987433 333445555544 55555
Q ss_pred H
Q 003784 416 N 416 (795)
Q Consensus 416 ~ 416 (795)
.
T Consensus 337 ~ 337 (364)
T PF03702_consen 337 R 337 (364)
T ss_dssp H
T ss_pred H
Confidence 4
No 109
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=80.99 E-value=17 Score=38.97 Aligned_cols=55 Identities=16% Similarity=0.267 Sum_probs=37.5
Q ss_pred HHHHHHHH-HHhCCceeeecchhHHHHHHhh-hcCCCCCCCcEEEEEEecCccceeeEEE
Q 003784 177 RKGLMQAA-ELAGMNVLSLVNEHSGAALQYG-IDKDFSNESRHVVFYDMGATTTYAALVY 234 (795)
Q Consensus 177 R~al~~Aa-~~AGl~~~~li~Ep~AAAl~y~-~~~~~~~~~~~vlV~D~GggT~dvsvv~ 234 (795)
+..+.+.. +..|+++ ++|+...=|.+.|. ....+... ..+++|+|||+|.++++.
T Consensus 87 ~~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~~--~~~v~DiGGGSte~~~~~ 143 (300)
T TIGR03706 87 GPEFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLPIA--DGLVVDIGGGSTELILGK 143 (300)
T ss_pred HHHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCCC--CcEEEEecCCeEEEEEec
Confidence 34444444 4579987 68888887777763 33333322 249999999999999873
No 110
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=79.24 E-value=6 Score=43.25 Aligned_cols=161 Identities=17% Similarity=0.207 Sum_probs=80.7
Q ss_pred cEEEEEcCccceEEEEEEeeCC--CCCEEEeeCCCCCccceeEEEEeCCcEEEcHhHHHHHhhCcchhhhhhhhhcCCCC
Q 003784 25 AVSSVDLGSEWLKVAVVNLKPG--QSPISIAINEMSKRKSPALVAFHESTRLLGEEASGIIARYPHRVYSQLRDMIGKPF 102 (795)
Q Consensus 25 ~vvGID~GTt~s~va~~~~~~g--~~~v~ii~n~~g~r~~PS~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~ 102 (795)
.++-||=|+|-|+|-++....+ +.|..+ ..+-=+...|=.-+|.+ +|......+..||.+..
T Consensus 68 Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~l-e~E~F~~~kPGLSsfad---------------dp~~aA~Sl~~LLd~A~ 131 (453)
T KOG1385|consen 68 YAIIIDAGSTGTRVHVYKFDQCLPGMPPEL-EHELFKEVKPGLSSFAD---------------DPEEAANSLRPLLDVAE 131 (453)
T ss_pred EEEEEecCCCcceEEEEEeccCCCCCCchh-HHHHHhhcCCcccccCC---------------ChHHHHHhHHHHHHHHH
Confidence 4788999999999988732222 111110 00000111233333322 33444455566665532
Q ss_pred hhhHhhHhhcCCCceEEECCCCcEEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHHH
Q 003784 103 KQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQ 182 (795)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~ 182 (795)
+.+... +|+ .-.+.++..-|-...+.+-...+|+.+++..+....-++..-.|+|=..=.
T Consensus 132 ~~vP~~----~~~-------kTPi~lkATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm~Gtd--------- 191 (453)
T KOG1385|consen 132 AFVPRE----HWK-------KTPIVLKATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIMDGTD--------- 191 (453)
T ss_pred hhCCHh----Hhc-------cCceEEEeecccccCChhHHHHHHHHHHHHHhccCCccccCCceeeccCcc---------
Confidence 222111 111 122445544556677888899999999988874332222211122211100
Q ss_pred HHHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEE
Q 003784 183 AAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALV 233 (795)
Q Consensus 183 Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv 233 (795)
-| +...| .+.|....-.......+.|+|+|||+|.++..
T Consensus 192 ----EG--v~aWi------TiN~Llg~L~~~~~~tvgv~DLGGGSTQi~f~ 230 (453)
T KOG1385|consen 192 ----EG--VYAWI------TINYLLGTLGAPGHRTVGVVDLGGGSTQITFL 230 (453)
T ss_pred ----cc--eeeee------ehhhhhcccCCCCCCceEEEEcCCceEEEEEe
Confidence 01 11111 24455443222335789999999999999887
No 111
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=78.52 E-value=6.5 Score=43.35 Aligned_cols=20 Identities=40% Similarity=0.611 Sum_probs=17.9
Q ss_pred CcEEEEEcCccceEEEEEEe
Q 003784 24 SAVSSVDLGSEWLKVAVVNL 43 (795)
Q Consensus 24 ~~vvGID~GTt~s~va~~~~ 43 (795)
..++.||||.||.+||.+..
T Consensus 75 g~~LaiD~GGTnlRvc~V~l 94 (466)
T COG5026 75 GSVLAIDLGGTNLRVCLVVL 94 (466)
T ss_pred CCEEEEecCCceEEEEEEEe
Confidence 47999999999999999854
No 112
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=77.11 E-value=13 Score=41.63 Aligned_cols=84 Identities=23% Similarity=0.236 Sum_probs=58.6
Q ss_pred eeHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHH
Q 003784 334 ITRQKFEELC-EDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASL 412 (795)
Q Consensus 334 itr~efe~l~-~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~ 412 (795)
.++++|-+.. +.+.-+..+.++..=++++. .+..+-+=||.++..++.+...+.+|. ++.++. -.|..|+|||+
T Consensus 371 t~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~---~~~~LrvDGG~s~n~~lmQfqADilg~-~V~Rp~-~~EtTAlGaA~ 445 (499)
T COG0554 371 TTKAHIARATLESIAYQTRDVLEAMEKDSGI---KLTRLRVDGGASRNNFLMQFQADILGV-PVERPV-VLETTALGAAY 445 (499)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceeEEEcCccccchhHHHHHHHHhCC-eeeccc-cchhhHHHHHH
Confidence 4555554432 33444455555544444554 577888899999999999999999986 565554 45789999999
Q ss_pred HHHHhcCCcc
Q 003784 413 LAANLSDGIK 422 (795)
Q Consensus 413 ~aa~ls~~~~ 422 (795)
.|..-.+.++
T Consensus 446 lAGla~G~w~ 455 (499)
T COG0554 446 LAGLAVGFWK 455 (499)
T ss_pred HHhhhhCcCC
Confidence 9988666443
No 113
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=77.00 E-value=19 Score=37.21 Aligned_cols=72 Identities=24% Similarity=0.361 Sum_probs=48.4
Q ss_pred CCCCCcEEE--ecCCCCCHHHHHHHHHHHHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEE
Q 003784 158 KLAVKDFVI--SVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALV 233 (795)
Q Consensus 158 ~~~~~~~VI--tVPa~f~~~qR~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv 233 (795)
+..+..++. .+|.+||. -+++++.+.-.|.+. -+++-..||.+....+... .....++++|+|-|+|-..++
T Consensus 111 g~~~~~~~y~~~~P~~~TR--m~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~v-~~~~~~~~vniGN~HTlaa~v 184 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFTR--MRAVRESLGGAGYDE-VVMDTGPAAVLGALCDPEV-SSREGIIVVNIGNGHTLAALV 184 (254)
T ss_pred CCCHHHeeecCCCcHHHHH--HHHHHHHhccCCCCc-eEecCHHHHHhhhhcChhh-hccCCeEEEEeCCccEEEEEE
Confidence 445567888 89999774 346666666666665 4555555555544443322 234679999999999988888
No 114
>PLN02362 hexokinase
Probab=76.88 E-value=7.6 Score=44.64 Aligned_cols=54 Identities=22% Similarity=0.207 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHHhCC--ceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceee
Q 003784 173 GQAERKGLMQAAELAGM--NVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAA 231 (795)
Q Consensus 173 ~~~qR~al~~Aa~~AGl--~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvs 231 (795)
...-.+.+.+|...-|+ ++..|||+.+|..++..+.. +...+-+=+|-||=-+.
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY~~-----~~~~iG~IlGTGtNacY 259 (509)
T PLN02362 204 GKDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHYHD-----PDTVAAVIIGTGTNACY 259 (509)
T ss_pred CchHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhcCC-----CCceEEEEEECCccceE
Confidence 33445566666655565 56889999999877654432 23343333677754443
No 115
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=75.84 E-value=53 Score=39.37 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=17.6
Q ss_pred CCCcEEEEEcCccceEEEEE
Q 003784 22 SQSAVSSVDLGSEWLKVAVV 41 (795)
Q Consensus 22 ~~~~vvGID~GTt~s~va~~ 41 (795)
+-..++|||+|.|++++|++
T Consensus 16 ~~~~~L~iDIGGT~ir~al~ 35 (638)
T PRK14101 16 ADGPRLLADVGGTNARFALE 35 (638)
T ss_pred CCCCEEEEEcCchhheeeee
Confidence 34569999999999999998
No 116
>PLN02405 hexokinase
Probab=75.59 E-value=7.4 Score=44.57 Aligned_cols=56 Identities=27% Similarity=0.213 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHHhCC--ceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEE
Q 003784 173 GQAERKGLMQAAELAGM--NVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALV 233 (795)
Q Consensus 173 ~~~qR~al~~Aa~~AGl--~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv 233 (795)
...-.+.+.+|.+.-|+ ++..|||+.++..++..+.. +...+-+=+|-||=-+.+-
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~-----~~~~iG~IlGTGtNacY~E 261 (497)
T PLN02405 204 GQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYN-----PDVVAAVILGTGTNAAYVE 261 (497)
T ss_pred CchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCC-----CCceEEEEEeCCeeeEEEe
Confidence 44456667777776676 46889999999877655443 2333333467776544443
No 117
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=74.76 E-value=54 Score=35.68 Aligned_cols=54 Identities=28% Similarity=0.305 Sum_probs=41.9
Q ss_pred CCCCccEEEEecCccCCHHHHHHHHHHhCCCccC----CCCCcchhhHhhHHHHHHHh
Q 003784 364 KMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELD----RHLDADEAIVLGASLLAANL 417 (795)
Q Consensus 364 ~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~----~~~n~deaVa~GAa~~aa~l 417 (795)
-..+.+.++++||+.+.|++.+.|...++...+. ..+++|.-=|.+-|+.|...
T Consensus 287 ~~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 287 LQGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred ccCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 3456788999999999999999999999654443 25677777777778887754
No 118
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=74.54 E-value=4.4 Score=48.18 Aligned_cols=41 Identities=17% Similarity=0.314 Sum_probs=27.8
Q ss_pred eeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEE
Q 003784 192 LSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVY 234 (795)
Q Consensus 192 ~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~ 234 (795)
..+.+-|.|-.+........... +++++||||.|||++++.
T Consensus 256 ~tI~SGPAagvvGAa~ltg~~~g--~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 256 ETILSGPAAGVVGAAYLTGLKAG--NAIVFDMGGTSTDVALII 296 (674)
T ss_pred eeEeeccHHHHHHHHHhcccccC--CEEEEEcCCcceeeeeee
Confidence 44667777765554433111111 599999999999999986
No 119
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=72.63 E-value=15 Score=38.76 Aligned_cols=51 Identities=27% Similarity=0.433 Sum_probs=40.5
Q ss_pred ccEEEEecC--ccCCH-HHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHHHhcCCc
Q 003784 368 IYAVELIGG--GTRVP-KLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGI 421 (795)
Q Consensus 368 i~~V~LvGG--~sriP-~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~ls~~~ 421 (795)
...|+|.|- ++|.| .+++.|+++|.. ++ ..+.. ++.|.|+|+.|.-+.+..
T Consensus 263 ~~~IvLSGs~g~~r~~~~v~~~I~~~L~~-~V-~~L~~-ksAA~G~AiIA~dI~gGk 316 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVLSC-KV-LVLDS-ESAAIGLALIAEDIFSGK 316 (326)
T ss_pred CCcEEEeCcchhccCchHHHHHHHHHhCC-Ce-EEecc-hhhhhhHHHHHHHHhCCc
Confidence 347999987 99999 999999999974 32 23333 789999999998877654
No 120
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=72.50 E-value=5.7 Score=37.07 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=16.3
Q ss_pred CcEEEEEcCccceEEEEE
Q 003784 24 SAVSSVDLGSEWLKVAVV 41 (795)
Q Consensus 24 ~~vvGID~GTt~s~va~~ 41 (795)
|.++|||+|+..+.+|+.
T Consensus 1 mriL~lD~G~kriGiAvs 18 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVS 18 (135)
T ss_dssp -EEEEEEECSSEEEEEEE
T ss_pred CeEEEEEeCCCeEEEEEe
Confidence 568999999999999998
No 121
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=72.01 E-value=11 Score=29.69 Aligned_cols=36 Identities=11% Similarity=0.144 Sum_probs=29.8
Q ss_pred HhhcCCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCce
Q 003784 154 DTHAKLAVKDFVISVPPYFGQAERKGLMQAAELAGMNV 191 (795)
Q Consensus 154 ~~~~~~~~~~~VItVPa~f~~~qR~al~~Aa~~AGl~~ 191 (795)
+.+.... ...++.|+.++..+|..+.+.|+..||..
T Consensus 9 ~~F~~~~--~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 9 EDFRASD--NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred HHHHcCc--ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 3444433 57899999999999999999999999875
No 122
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=70.59 E-value=13 Score=41.06 Aligned_cols=82 Identities=22% Similarity=0.231 Sum_probs=57.4
Q ss_pred EeeHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCccE-EEEecCccCCHHHHHHHHHHhCCCccCC-CCCcchhhHhh
Q 003784 333 SITRQKFEELCEDLWERS-LVPLREVLNYSGLKMDEIYA-VELIGGGTRVPKLQAKLQEYLGRTELDR-HLDADEAIVLG 409 (795)
Q Consensus 333 ~itr~efe~l~~~~~~~i-~~~i~~~l~~a~~~~~~i~~-V~LvGG~sriP~v~~~l~~~f~~~~i~~-~~n~deaVa~G 409 (795)
.-.+.++-..++..++++ ...++.++++.+ ++. |.|.||....-.....|.+..+-+.+.. +.-.|+-+|.|
T Consensus 132 ~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiG 206 (360)
T PF02543_consen 132 TQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIG 206 (360)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHH
Confidence 456778887778777664 556666676665 345 9999999999999999988855555544 44569999999
Q ss_pred HHHHHHHhcC
Q 003784 410 ASLLAANLSD 419 (795)
Q Consensus 410 Aa~~aa~ls~ 419 (795)
||+++.....
T Consensus 207 aA~~~~~~~~ 216 (360)
T PF02543_consen 207 AALYAWHELG 216 (360)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 9999886443
No 123
>PLN02914 hexokinase
Probab=70.50 E-value=13 Score=42.60 Aligned_cols=59 Identities=22% Similarity=0.146 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHhCC--ceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEE
Q 003784 172 FGQAERKGLMQAAELAGM--NVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYF 235 (795)
Q Consensus 172 f~~~qR~al~~Aa~~AGl--~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~ 235 (795)
-...-.+.+.+|.+.-|+ ++..|||+.+|..++..+.. +...+-+=+|-||=-+.+-++
T Consensus 203 ~G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~-----~~~~iGlIlGTGtNacY~E~~ 263 (490)
T PLN02914 203 AGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWD-----DDVMVAVILGTGTNACYVERT 263 (490)
T ss_pred cCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCC-----CCceEEEEEECCeeeEEEeec
Confidence 344455666666665565 56889999999877655443 223333336877655555444
No 124
>PRK00976 hypothetical protein; Provisional
Probab=70.41 E-value=19 Score=38.65 Aligned_cols=51 Identities=20% Similarity=0.336 Sum_probs=39.1
Q ss_pred CccEEEEecCccCCH--HHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHHHhcCC
Q 003784 367 EIYAVELIGGGTRVP--KLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDG 420 (795)
Q Consensus 367 ~i~~V~LvGG~sriP--~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~ls~~ 420 (795)
+.+.|+|-||-++.+ .+.+.+++.+.. . ...-...+.++|||+.|..+.+.
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~-~--~a~LG~dAGaiGAA~iA~~i~~G 315 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDK-K--VLVLGKESAAIGLALIARDIFNG 315 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhcc-c--ccccCCchHHHHHHHHHHHHhCC
Confidence 467899999999998 889999988854 2 22234589999999998876543
No 125
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=69.72 E-value=11 Score=42.59 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=47.3
Q ss_pred ecCCCCCHHHHHHHHHHHHHhCCc---eeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEe
Q 003784 167 SVPPYFGQAERKGLMQAAELAGMN---VLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFS 236 (795)
Q Consensus 167 tVPa~f~~~qR~al~~Aa~~AGl~---~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~ 236 (795)
.++......--+.+.+|.+.-|+. +..++|+.++.-++..+.. +++++-+=+|.||=-+-+.+..
T Consensus 184 ~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~-----~~~~igvI~GTGtNacY~e~~~ 251 (474)
T KOG1369|consen 184 KATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYED-----PNCEIGVIFGTGTNACYMEDMR 251 (474)
T ss_pred cchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecC-----CCcEEEEEECCCccceeeeecc
Confidence 344555566678899999988886 6789999999877765543 3566667789998776666554
No 126
>PRK09604 UGMP family protein; Validated
Probab=68.83 E-value=1.8e+02 Score=31.65 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCC--ccCCCC---CcchhhHhhHHHH
Q 003784 350 SLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRT--ELDRHL---DADEAIVLGASLL 413 (795)
Q Consensus 350 i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~--~i~~~~---n~deaVa~GAa~~ 413 (795)
+.+.++.+++. .+++.|+|.||.+...++++.|.+.+... .+..+. ..|.+++.|++=+
T Consensus 242 l~~~~~~~~~~-----~~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~ 305 (332)
T PRK09604 242 LVIKTKRALKQ-----TGVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGY 305 (332)
T ss_pred HHHHHHHHHHH-----hCCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHH
Confidence 34444444443 25678999999999999999999987321 332222 4588999999844
No 127
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=67.56 E-value=16 Score=28.78 Aligned_cols=41 Identities=20% Similarity=0.219 Sum_probs=32.3
Q ss_pred HHHHHhhcCCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCce
Q 003784 150 VNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAAELAGMNV 191 (795)
Q Consensus 150 ~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~Aa~~AGl~~ 191 (795)
.+..+.+.... ....++.|+.++..+|..+.+.|+..||..
T Consensus 5 ~~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s 45 (60)
T cd02640 5 RQIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKS 45 (60)
T ss_pred HHHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 34444554433 357899999999999999999999999976
No 128
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=67.38 E-value=1.8e+02 Score=31.21 Aligned_cols=51 Identities=12% Similarity=0.227 Sum_probs=33.9
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHh
Q 003784 336 RQKFEELCED-LWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYL 391 (795)
Q Consensus 336 r~efe~l~~~-~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f 391 (795)
+.++-..++. +.+-+.+.++++++.. .++.|+|.||-....++++.|.+.+
T Consensus 231 ~~~iAasfq~~l~~~l~~~~~~~~~~~-----g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 231 KEDIAYSFQETAFDHLIEKTKRALKDT-----GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 3344333333 3334445555555443 4678999999999999999999887
No 129
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=67.10 E-value=27 Score=38.36 Aligned_cols=63 Identities=24% Similarity=0.322 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCCccCC----CCCcchhhHhhHHHHHHH
Q 003784 350 SLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDR----HLDADEAIVLGASLLAAN 416 (795)
Q Consensus 350 i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~----~~n~deaVa~GAa~~aa~ 416 (795)
+...|.+.++... ...+.|+++||+++.|++.++|++.++ .++.. ..++|.-=|..-|++|..
T Consensus 272 TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~-~~v~~~~~~G~~~da~EA~aFA~La~~ 338 (365)
T PRK09585 272 TAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLP-TEVATTDALGIDGDAKEALAFAWLAVR 338 (365)
T ss_pred HHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcC-CcccCHHHcCCChhHHHHHHHHHHHHH
Confidence 3444445554332 234689999999999999999999996 23321 134444344445666654
No 130
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=65.68 E-value=89 Score=33.82 Aligned_cols=53 Identities=15% Similarity=0.271 Sum_probs=37.7
Q ss_pred eHHHHHHHHHH----HHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhC
Q 003784 335 TRQKFEELCED----LWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLG 392 (795)
Q Consensus 335 tr~efe~l~~~----~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~ 392 (795)
..++.+++|.. .++-+.+..+++|+..+ .+.++++||-+....+|+++++...
T Consensus 230 ~~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~~ 286 (342)
T COG0533 230 NEEDKEDIAASFQEAVFDMLVEKTERALKHTG-----KKELVIAGGVAANSRLREMLEEMCK 286 (342)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCEEEEeccHHHhHHHHHHHHHHHH
Confidence 34444444443 55666666677776654 4579999999999999999998774
No 131
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=64.17 E-value=5.8 Score=34.40 Aligned_cols=17 Identities=41% Similarity=0.456 Sum_probs=15.9
Q ss_pred cEEEEEcCccceEEEEE
Q 003784 25 AVSSVDLGSEWLKVAVV 41 (795)
Q Consensus 25 ~vvGID~GTt~s~va~~ 41 (795)
.++|||+|.|++++|++
T Consensus 2 ~ilgiD~Ggt~i~~a~~ 18 (99)
T smart00732 2 RVLGLDPGRKGIGVAVV 18 (99)
T ss_pred cEEEEccCCCeEEEEEE
Confidence 48999999999999998
No 132
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=63.67 E-value=2.2e+02 Score=30.79 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=30.9
Q ss_pred CccEEEEecCccCCHHHHHHHHHHhCCC--ccCCC---CCcchhhHhh
Q 003784 367 EIYAVELIGGGTRVPKLQAKLQEYLGRT--ELDRH---LDADEAIVLG 409 (795)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~~--~i~~~---~n~deaVa~G 409 (795)
.++.|+|.||-+...++++.|.+.+... ++..+ +..|.+++.|
T Consensus 242 g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 242 GKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 3567999999999999999999865221 22222 2457788888
No 133
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=63.55 E-value=99 Score=31.26 Aligned_cols=75 Identities=16% Similarity=0.143 Sum_probs=46.0
Q ss_pred EeeHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCC--ccCCCCCcchhhHhh
Q 003784 333 SITRQKFEELC-EDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRT--ELDRHLDADEAIVLG 409 (795)
Q Consensus 333 ~itr~efe~l~-~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~--~i~~~~n~deaVa~G 409 (795)
..|.+++--.. +.+|.-+.+.-++++...+ -+.|++|||-...-.+|+++....... ++ ...|-..|+-.|
T Consensus 224 ~~t~~DLCySLQEtvFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~-faTDeRfCIDNG 297 (336)
T KOG2708|consen 224 EVTKEDLCYSLQETVFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMCSERGGKL-FATDERFCIDNG 297 (336)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHHHhcCCce-EecccceeeeCc
Confidence 44555543222 2345555555566665443 347999999999999999998877432 22 233444577777
Q ss_pred HHHH
Q 003784 410 ASLL 413 (795)
Q Consensus 410 Aa~~ 413 (795)
+-+.
T Consensus 298 ~MIA 301 (336)
T KOG2708|consen 298 VMIA 301 (336)
T ss_pred hHHH
Confidence 7654
No 134
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=62.99 E-value=2.2e+02 Score=30.65 Aligned_cols=57 Identities=21% Similarity=0.286 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHh---CCCccCCC---CCcchhhHhhHH
Q 003784 349 RSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYL---GRTELDRH---LDADEAIVLGAS 411 (795)
Q Consensus 349 ~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f---~~~~i~~~---~n~deaVa~GAa 411 (795)
-+.+.+..+++.. .++.|+|.||.+...++++.|.+.+ +- .+..+ +..|.+++.|++
T Consensus 246 ~l~~~~~~~~~~~-----~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~-~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 246 VLVEKTKRALKKT-----GLKTLVVAGGVAANSRLRERLEELAEKAGL-EVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred HHHHHHHHHHHHh-----CCCeEEEeccHHHHHHHHHHHHHHHHHCCC-EEECCCCCCCChHHHHHHHH
Confidence 3344445555433 4668999999999999999999887 33 22222 245888888887
No 135
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=62.82 E-value=14 Score=34.53 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=17.4
Q ss_pred CCcEEEEEcCccceEEEEE
Q 003784 23 QSAVSSVDLGSEWLKVAVV 41 (795)
Q Consensus 23 ~~~vvGID~GTt~s~va~~ 41 (795)
.+.++|||+|+..+.+|+.
T Consensus 3 ~~~iLalD~G~kriGvAv~ 21 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVS 21 (138)
T ss_pred CCcEEEEEeCCCEEEEEEe
Confidence 5679999999999999998
No 136
>PRK03011 butyrate kinase; Provisional
Probab=61.25 E-value=16 Score=40.18 Aligned_cols=47 Identities=23% Similarity=0.252 Sum_probs=36.4
Q ss_pred CccEEEEecCccCCHHHHHHHHHHhC---CCccCCCCCcchhhHhhHHHH
Q 003784 367 EIYAVELIGGGTRVPKLQAKLQEYLG---RTELDRHLDADEAIVLGASLL 413 (795)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~---~~~i~~~~n~deaVa~GAa~~ 413 (795)
++|.|+|.||.+..+.+.+.|++.+. ...+....+-.+|.+.||+..
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence 68899999999999999998887664 234445556668999998744
No 137
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=60.14 E-value=39 Score=27.74 Aligned_cols=56 Identities=11% Similarity=0.345 Sum_probs=37.7
Q ss_pred HHhhhhcCCCCCHHHHHHHHHHHHHhhh----HHHHHHH-hhhcchHHHHHHHHHHHHHHHHHhcc
Q 003784 716 QEWLYTDGEDATAKEFQERLDVLKAIGD----PVFFRFK-ELTARPASVEHAQKYLGQLQQIVNDW 776 (795)
Q Consensus 716 ~~Wl~~~g~~a~~~~~~~k~~~L~~~~~----~i~~r~~-e~~~rp~a~~~~~~~~~~~~~~~~~~ 776 (795)
+.||.++ ..++.+|.+.+-++++ ..-.|+. -++.||+.|+.++..-...+..++.+
T Consensus 13 skWL~~~-----l~dmd~kvk~mlklieedgdSfakrAEmyy~kRp~Li~~vee~yr~YrsLAerY 73 (74)
T PF07765_consen 13 SKWLQEN-----LSDMDEKVKAMLKLIEEDGDSFAKRAEMYYKKRPELISLVEEFYRSYRSLAERY 73 (74)
T ss_pred CHHHHHH-----HHHHHHHHHHHHHHhccCcchHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHhc
Confidence 3577654 6677777776655544 2333433 36789999999999888887777654
No 138
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=59.98 E-value=9.6 Score=39.38 Aligned_cols=17 Identities=18% Similarity=0.428 Sum_probs=15.9
Q ss_pred EEEEEcCccceEEEEEE
Q 003784 26 VSSVDLGSEWLKVAVVN 42 (795)
Q Consensus 26 vvGID~GTt~s~va~~~ 42 (795)
++|||+|||++++++++
T Consensus 2 ~lgiDiGTts~K~~l~d 18 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFD 18 (245)
T ss_dssp EEEEEECSSEEEEEEEE
T ss_pred EEEEEEcccceEEEEEe
Confidence 79999999999999994
No 139
>PLN02596 hexokinase-like
Probab=59.45 E-value=19 Score=41.20 Aligned_cols=59 Identities=22% Similarity=0.200 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHhCC--ceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEe
Q 003784 173 GQAERKGLMQAAELAGM--NVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFS 236 (795)
Q Consensus 173 ~~~qR~al~~Aa~~AGl--~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~ 236 (795)
...-.+.+.+|.+.-|+ ++..++|+.++..++.++.. ++..+-+=+|-||=-+.+-+++
T Consensus 204 G~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~-----~~~~iG~I~GTGtNacY~E~~~ 264 (490)
T PLN02596 204 GKALVNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYN-----KDTVAAVTLGMGTNAAYVEPAQ 264 (490)
T ss_pred CcHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCC-----CCeEEEEEEecccceEEEEEcc
Confidence 34445556666665566 56899999999877665543 2333333378886555544443
No 140
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=56.76 E-value=19 Score=43.47 Aligned_cols=49 Identities=27% Similarity=0.263 Sum_probs=37.8
Q ss_pred CccEEEEecCccCCHHHHHHHHHHhCCC--ccCC---CCCcchhhHhhHHHHHH
Q 003784 367 EIYAVELIGGGTRVPKLQAKLQEYLGRT--ELDR---HLDADEAIVLGASLLAA 415 (795)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~~--~i~~---~~n~deaVa~GAa~~aa 415 (795)
.++.|+|+||..+..++++.|.+.++.. ++.. -...|.+++.|.|+.|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999887532 2222 23458999999998874
No 141
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=56.43 E-value=31 Score=27.21 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=31.0
Q ss_pred HHHHHhhcCCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCce
Q 003784 150 VNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAAELAGMNV 191 (795)
Q Consensus 150 ~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~Aa~~AGl~~ 191 (795)
.+....+...+ ....+..|+.++..||..+.+.|+..||..
T Consensus 5 ~~~i~~F~~~~-~~~~l~F~p~ls~~eR~~vH~lA~~~gL~s 45 (60)
T cd02641 5 KAMVKAFMKDP-KATELEFPPTLSSHDRLLVHELAEELGLRH 45 (60)
T ss_pred HHHHHHHHcCC-CcCcEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 33344444333 236789999999999999999999999865
No 142
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=56.41 E-value=1.7e+02 Score=31.23 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=26.6
Q ss_pred hCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCc
Q 003784 187 AGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGAT 226 (795)
Q Consensus 187 AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~Ggg 226 (795)
.|+++ .+-|+..|||++-.+...- ...+.++++-+|-|
T Consensus 106 ~~~Pv-~veNDan~aalaE~~~g~~-~~~~~~~~i~~gtG 143 (314)
T COG1940 106 LGLPV-FVENDANAAALAEAWFGAG-RGIDDVVYITLGTG 143 (314)
T ss_pred HCCCE-EEecHHHHHHHHHHHhCCC-CCCCCEEEEEEccc
Confidence 45665 7999999999987654421 23456788878776
No 143
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=56.41 E-value=3e+02 Score=29.98 Aligned_cols=232 Identities=15% Similarity=0.105 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCC---CCcEEEecCCCCCHHHHHHHHHHHHHhCC--ceeeecchhHHHHHHhhhcCCCCCC
Q 003784 140 ELLAMVLSYAVNLVDTHAKLA---VKDFVISVPPYFGQAERKGLMQAAELAGM--NVLSLVNEHSGAALQYGIDKDFSNE 214 (795)
Q Consensus 140 el~a~~L~~l~~~a~~~~~~~---~~~~VItVPa~f~~~qR~al~~Aa~~AGl--~~~~li~Ep~AAAl~y~~~~~~~~~ 214 (795)
+.-..-+..+.+.+-...+.. .+-+.+|+-+...-.-+--+.-|-..|+- +.+-=|+--.|=||.--+..+ .-
T Consensus 80 ~~Hr~ni~~~iqral~aa~~~p~dldaIAVT~gPGl~lsL~vGl~fA~glA~~l~kPlipVHHMeAHAL~~rl~~~--~v 157 (405)
T KOG2707|consen 80 LLHRENIPRLIQRALDAAGLSPKDLDAIAVTRGPGLPLSLKVGLSFAKGLAVKLQKPLIPVHHMEAHALSIRLVDD--SV 157 (405)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceeEEEecCCCceeehhhhHHHHHHHHHhccCCccchhHHHHhHHHHHhccC--Cc
Confidence 344455556666555444443 45578888888877767777777666643 234457778888877655542 22
Q ss_pred CcEEEEEEecCccceeeEEEEeeccccccCeeeecCeEEEEEeccCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCH
Q 003784 215 SRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSP 294 (795)
Q Consensus 215 ~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~ 294 (795)
.-.++.+=+-||++-+.+.+ ..+.+++++..-| ..=|+.||+. .+.+.-. ++..+...-.
T Consensus 158 ~FPFl~lLvSGGH~llvla~-------------~~~~~~llg~TvD-iApGe~lDK~-----ar~Lgl~-~~~e~~~~~g 217 (405)
T KOG2707|consen 158 RFPFLALLVSGGHTLLVLAN-------------GVGDHELLGQTVD-IAPGEALDKC-----ARRLGLL-GHPEDARSGG 217 (405)
T ss_pred CCceeeEeeeCCceEEEEec-------------cccceeeeecccc-cchHHHHHHH-----HHHhcCC-CCccchhhhh
Confidence 23466666788888888773 2457788887666 3456777753 2222111 0000000001
Q ss_pred HHHHHHHHHHHHHh-----hhccCCCceeEEEeecccCcc---------eEEEeeHHHHHHHHH-HHHHHHHHHHHHHHH
Q 003784 295 KAMAKLKKQVKRTK-----EILSANTMAPISVESLYVDID---------FRSSITRQKFEELCE-DLWERSLVPLREVLN 359 (795)
Q Consensus 295 ~~~~~L~~~~e~~K-----~~LS~~~~~~i~i~~l~~~~d---------~~~~itr~efe~l~~-~~~~~i~~~i~~~l~ 359 (795)
++...+.+.+...+ .=|-....++++..++..... -.....+.+|..-++ .++..+..-.+.+++
T Consensus 218 ~aie~la~~~s~~~~l~~piPL~~~~~~nFSFsglk~~~~~~i~k~~k~e~~~s~~~dfaa~lQ~tv~~Hi~~Kt~~ai~ 297 (405)
T KOG2707|consen 218 KAIEHLANRASADLHLKFPIPLKNVKKCNFSFSGLKTSYRRIIEKLEKNEETLSEIADFAASLQRTVFRHISSKTHRAIK 297 (405)
T ss_pred hHHHHHHhccCccccccCCCCccccccCCccHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111110000 000011112222211110000 001223334433222 244445555555666
Q ss_pred HCCCCCCCccEEEEecCccCCHHHHHHHHHHhCC
Q 003784 360 YSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGR 393 (795)
Q Consensus 360 ~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~ 393 (795)
...+.++.+...++.||-++..+|+..|+...+.
T Consensus 298 ~~~l~~~~~~~lV~SGGVAsN~yir~~le~l~~~ 331 (405)
T KOG2707|consen 298 SLLLQPKNVKQLVISGGVASNQYIRGALEKLSAA 331 (405)
T ss_pred HhhhcccCCceEEEcCCccchHHHHHHHHHHHHh
Confidence 5556677788999999999999999999987654
No 144
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=54.46 E-value=3.3e+02 Score=29.86 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhC
Q 003784 346 LWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLG 392 (795)
Q Consensus 346 ~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~ 392 (795)
+++.+.+.+..+++.. .++.|+++||-+...++|+.|++...
T Consensus 247 v~~~L~~k~~~a~~~~-----~~~~lvv~GGVAaN~~LR~~l~~~~~ 288 (345)
T PTZ00340 247 IFAMLVEVTERAMSHC-----GSNEVLIVGGVGCNLRLQEMMQQMAK 288 (345)
T ss_pred HHHHHHHHHHHHHHHh-----CCCeEEEcCCHHHHHHHHHHHHHHHH
Confidence 4444455555555543 46789999999999999999999874
No 145
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=53.58 E-value=25 Score=39.82 Aligned_cols=41 Identities=17% Similarity=0.324 Sum_probs=23.9
Q ss_pred eeecchhHHHH-----HHhhhcCCCCC------CCcEEEEEEecCccceeeEE
Q 003784 192 LSLVNEHSGAA-----LQYGIDKDFSN------ESRHVVFYDMGATTTYAALV 233 (795)
Q Consensus 192 ~~li~Ep~AAA-----l~y~~~~~~~~------~~~~vlV~D~GggT~dvsvv 233 (795)
+++|+-..=+. +.|...+ +.. ...++-++||||+++.++..
T Consensus 130 v~visG~eEg~y~WvtvNyl~g~-l~~~~~~~~~~~t~g~lDlGGaStQIaf~ 181 (434)
T PF01150_consen 130 VRVISGEEEGIYGWVTVNYLLGR-LDSSGASKSPSNTVGALDLGGASTQIAFE 181 (434)
T ss_dssp CEE--HHHHHHHHHHHHHHHTTT-SSSSTEEEEESS-EEEEEE-SSEEEEEEE
T ss_pred eEecCHHHhhHhHHHHHHHHhCc-cccccccCCCCceEEEEecCCcceeeeec
Confidence 56776655444 4444443 222 25789999999999999954
No 146
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=51.85 E-value=80 Score=32.65 Aligned_cols=92 Identities=21% Similarity=0.259 Sum_probs=53.5
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeeccccccCeee
Q 003784 168 VPPYFGQAERKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTV 247 (795)
Q Consensus 168 VPa~f~~~qR~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~~~~~~~~~ 247 (795)
+|.+|+. -|.+...| ..++-. ..+++.--||+....++. .....||+|+|-|++..+++.
T Consensus 186 iPe~FtR-Mraaa~sa-l~~~t~-av~mDskfaav~gal~dp----aa~palvVd~GngHttaalvd------------- 245 (342)
T COG4012 186 IPESFTR-MRAAAMSA-LSAGTD-AVAMDSKFAAVMGALVDP----AADPALVVDYGNGHTTAALVD------------- 245 (342)
T ss_pred CchhHHH-HHHHHHHH-HhcCce-EEEEcchhHhhhhcccCc----ccCceEEEEccCCceEEEEec-------------
Confidence 6666653 23333222 223433 346666666666555543 224789999999999999982
Q ss_pred ecCeEEEEEeccCCCCchHHHHHHHHHHHHHHH
Q 003784 248 SVNQFQVKDVRWDAELGGQNMELRLVEYFADEF 280 (795)
Q Consensus 248 ~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~ 280 (795)
.+.+.-+.......+.-..|...|.+++.-++
T Consensus 246 -edRI~gv~EHHT~~Lspekled~I~rf~~GeL 277 (342)
T COG4012 246 -EDRIVGVYEHHTIRLSPEKLEDQIIRFVEGEL 277 (342)
T ss_pred -CCeEEEEeecccccCCHHHHHHHHHHHHhccc
Confidence 33444444444556666666666655555444
No 147
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=51.43 E-value=2e+02 Score=30.31 Aligned_cols=49 Identities=27% Similarity=0.206 Sum_probs=31.1
Q ss_pred CccEEEEecCccCCHHHHHHHHHHhCCC------ccCCCCCcchhhHhhHHHHHH
Q 003784 367 EIYAVELIGGGTRVPKLQAKLQEYLGRT------ELDRHLDADEAIVLGASLLAA 415 (795)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~~------~i~~~~n~deaVa~GAa~~aa 415 (795)
+.+.|+|-||.+..+.+.+.+++.+... ++....-.+.+.+.|||..+.
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 4567888887776665556666655321 222333456788999998754
No 148
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=50.28 E-value=1.5e+02 Score=26.08 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHhcccCCCC
Q 003784 702 SEERQSFVEKLDEAQEWLYTDGEDATAKEFQERLDVLKAIGDPVFFRFKELTARPASVEHAQKYLGQLQQIVNDWETNKP 781 (795)
Q Consensus 702 ~~e~~~i~~~l~e~~~Wl~~~g~~a~~~~~~~k~~~L~~~~~~i~~r~~e~~~rp~a~~~~~~~~~~~~~~~~~~~~~~~ 781 (795)
++=...|..+++++++-|.+.| +...+++.+-...++++......|+.... ...++..+.... ..+++-...|
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg-~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~--d~v~~~sk~a~~----~tD~yV~e~P 83 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSG-SLAGDEAEELRSKAESALKEARDRLGDTG--DAVVQRSKAAAD----ATDDYVRENP 83 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHH----HHHHHHHcCC
Confidence 4456788899999999999887 55566777777778888888877777664 333444444443 3355555667
Q ss_pred C
Q 003784 782 W 782 (795)
Q Consensus 782 ~ 782 (795)
|
T Consensus 84 W 84 (104)
T COG4575 84 W 84 (104)
T ss_pred c
Confidence 7
No 149
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=49.79 E-value=10 Score=40.79 Aligned_cols=53 Identities=25% Similarity=0.352 Sum_probs=31.7
Q ss_pred eeHHHHHHHHHHHHH----HHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCC
Q 003784 334 ITRQKFEELCEDLWE----RSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRT 394 (795)
Q Consensus 334 itr~efe~l~~~~~~----~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~ 394 (795)
++-++.+++...+++ .+.+.++.++.+.+..+ +..||.+ |++-..+.+.+|-.
T Consensus 245 ~~~~~~~~~A~~i~~~~~~~m~~ai~~v~~~~G~Dp------v~~gGaG--~~~a~~lA~~lg~~ 301 (318)
T TIGR03123 245 LGEEDVRNLAKYYYEAQLEQLTEAIEEVLERYGLKT------VVAAGAG--EFLAKEAAARLGRE 301 (318)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------eEEecch--HHHHHHHHHHcCCC
Confidence 344456665555444 45555555555555543 5556665 88888888887754
No 150
>PLN02920 pantothenate kinase 1
Probab=49.77 E-value=72 Score=35.26 Aligned_cols=50 Identities=12% Similarity=-0.144 Sum_probs=34.9
Q ss_pred CCccEEEEecCccCCH-HHHHHHHHH---h--CCCccCCCCCcchhhHhhHHHHHH
Q 003784 366 DEIYAVELIGGGTRVP-KLQAKLQEY---L--GRTELDRHLDADEAIVLGASLLAA 415 (795)
Q Consensus 366 ~~i~~V~LvGG~sriP-~v~~~l~~~---f--~~~~i~~~~n~deaVa~GAa~~aa 415 (795)
.+++.|+++|+..|.+ ..++.|.-. . +..+....-+....-|+||++...
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~~ 351 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSYE 351 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhcc
Confidence 4788999999999998 777655432 2 222444555677799999986643
No 151
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=48.98 E-value=54 Score=31.32 Aligned_cols=65 Identities=12% Similarity=0.208 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhh------cchHHHHHHHHHHHHHHHHHhcccCCCCCCChhhhhhhh
Q 003784 728 AKEFQERLDVLKAIGDPVFFRFKELT------ARPASVEHAQKYLGQLQQIVNDWETNKPWLPKDRTDEVL 792 (795)
Q Consensus 728 ~~~~~~k~~~L~~~~~~i~~r~~e~~------~rp~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~ 792 (795)
..-|.+|++.|++-|..+..-+++.. +..+.++.|++-....+..+.++.....|+|.+++..|-
T Consensus 88 i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~ 158 (201)
T KOG4603|consen 88 IVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVY 158 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 34566666666666666555544432 335556667777777777788888888888888887764
No 152
>PRK12704 phosphodiesterase; Provisional
Probab=48.44 E-value=2.3e+02 Score=32.91 Aligned_cols=64 Identities=17% Similarity=0.215 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHhcccCCCCCCChhhhhhhh
Q 003784 729 KEFQERLDVLKAIGDPVFFRFKELTARPASVEHAQKYLGQLQQIVNDWETNKPWLPKDRTDEVL 792 (795)
Q Consensus 729 ~~~~~k~~~L~~~~~~i~~r~~e~~~rp~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~ 792 (795)
+.+.+|.+.|.+.-..+..|-.+.+.+-+.++..+..+..........-+..+-+|.+|-++.+
T Consensus 96 e~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea~~~l 159 (520)
T PRK12704 96 ENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEIL 159 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3566666667777777777777777777777777777766666666666778888888877654
No 153
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=48.29 E-value=2.8e+02 Score=29.88 Aligned_cols=97 Identities=13% Similarity=0.139 Sum_probs=55.1
Q ss_pred cEEEecCCCCCHHHHHHHHHHHHHhCCceeeecc---hhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEEEEeecc
Q 003784 163 DFVISVPPYFGQAERKGLMQAAELAGMNVLSLVN---EHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYN 239 (795)
Q Consensus 163 ~~VItVPa~f~~~qR~al~~Aa~~AGl~~~~li~---Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv~~~~~~ 239 (795)
...+|-|.-=++.-|.-+.+..- --|++..|.- .-.|-|+.|.... ..+..-+=+|+|-|-|-|-+-.+.
T Consensus 108 ~fLlteppln~penreytaeImf-EsfnvpglyiAVqavLALaaswts~~-v~er~ltG~VidsGdgvThvipva----- 180 (415)
T KOG0678|consen 108 YFLLTEPPLNQPENREYTAEIMF-ESFNVPGLYIAVQAVLALAASWTSRQ-VGERFLTGIVIDSGDGVTHVIPVA----- 180 (415)
T ss_pred eEEecCCCCCCchhhHHHHHhhh-hhccCchHHHHHHHHHHHHHHHHHhh-hhhheeeeEEEecCCCeeEEEEee-----
Confidence 46788888777777776654422 1345544322 2222233332221 112223448999999977766551
Q ss_pred ccccCeeeecCeEEEEEeccCCCCchHHHHHHHHHHH
Q 003784 240 AKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYF 276 (795)
Q Consensus 240 ~~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l 276 (795)
. .+.+.++-.+..+.|++++.-+-..+
T Consensus 181 ---------E-gyVigScik~iPiagrdiT~fiQ~ll 207 (415)
T KOG0678|consen 181 ---------E-GYVIGSCIKHIPIAGRDITYFIQQLL 207 (415)
T ss_pred ---------c-ceEEeeeeccccccCCchhHHHHHHh
Confidence 2 23444545566889999987666555
No 154
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=47.51 E-value=1.2e+02 Score=30.03 Aligned_cols=25 Identities=20% Similarity=0.481 Sum_probs=20.4
Q ss_pred chHHHHHHHHHHHHHHHHHhcccCC
Q 003784 755 RPASVEHAQKYLGQLQQIVNDWETN 779 (795)
Q Consensus 755 rp~a~~~~~~~~~~~~~~~~~~~~~ 779 (795)
=|+.++.++..+..++..++.|..+
T Consensus 133 Dp~~i~~~~~~~~~~~~~anrwTDN 157 (188)
T PF03962_consen 133 DPEKIEKLKEEIKIAKEAANRWTDN 157 (188)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4888888888888888888888554
No 155
>PRK00106 hypothetical protein; Provisional
Probab=47.22 E-value=1.8e+02 Score=33.81 Aligned_cols=76 Identities=12% Similarity=0.166 Sum_probs=52.2
Q ss_pred HHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHhcccCCCCCCChhhhhhh
Q 003784 712 LDEAQEWLYTDGEDATAKEFQERLDVLKAIGDPVFFRFKELTARPASVEHAQKYLGQLQQIVNDWETNKPWLPKDRTDEV 791 (795)
Q Consensus 712 l~e~~~Wl~~~g~~a~~~~~~~k~~~L~~~~~~i~~r~~e~~~rp~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~ 791 (795)
|..-+++|..- .+.+.+|...|.+.-..+..|-.+.+.+-+.++..+..+..........-+..+-+|.+|-+..
T Consensus 99 L~qrE~rL~qR-----EE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~eak~~ 173 (535)
T PRK00106 99 LKQIESRLTER-----ATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAEAREI 173 (535)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 44445566443 3356777777777777777777777777777777777776666666666677888888887765
Q ss_pred h
Q 003784 792 L 792 (795)
Q Consensus 792 ~ 792 (795)
+
T Consensus 174 l 174 (535)
T PRK00106 174 I 174 (535)
T ss_pred H
Confidence 4
No 156
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=47.00 E-value=16 Score=34.23 Aligned_cols=18 Identities=28% Similarity=0.483 Sum_probs=16.9
Q ss_pred CcEEEEEcCccceEEEEE
Q 003784 24 SAVSSVDLGSEWLKVAVV 41 (795)
Q Consensus 24 ~~vvGID~GTt~s~va~~ 41 (795)
+.++||||||-.+.||+.
T Consensus 2 ~~ilalD~G~KrIGvA~s 19 (141)
T COG0816 2 MRILALDVGTKRIGVAVS 19 (141)
T ss_pred ceEEEEecCCceEEEEEe
Confidence 679999999999999997
No 157
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=46.75 E-value=15 Score=42.79 Aligned_cols=19 Identities=16% Similarity=0.385 Sum_probs=17.2
Q ss_pred CcEEEEEcCccceEEEEEE
Q 003784 24 SAVSSVDLGSEWLKVAVVN 42 (795)
Q Consensus 24 ~~vvGID~GTt~s~va~~~ 42 (795)
..++|||+|||++++++++
T Consensus 3 ~~~lgID~GTts~Ka~l~d 21 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFD 21 (520)
T ss_pred cEEEEEecCCCceEEEEEC
Confidence 3699999999999999994
No 158
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=46.22 E-value=16 Score=42.35 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=18.1
Q ss_pred CCcEEEEEcCccceEEEEEE
Q 003784 23 QSAVSSVDLGSEWLKVAVVN 42 (795)
Q Consensus 23 ~~~vvGID~GTt~s~va~~~ 42 (795)
++.++|||+|||++++.+++
T Consensus 3 ~~~~lgIDiGTt~~Kavl~d 22 (502)
T COG1070 3 MKYVLGIDIGTTSVKAVLFD 22 (502)
T ss_pred ccEEEEEEcCCCcEEEEEEe
Confidence 56799999999999999993
No 159
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=45.80 E-value=1.4e+02 Score=28.45 Aligned_cols=64 Identities=16% Similarity=0.106 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHCCCC-----CCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHH
Q 003784 347 WERSLVPLREVLNYSGLK-----MDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASL 412 (795)
Q Consensus 347 ~~~i~~~i~~~l~~a~~~-----~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~ 412 (795)
+..+...+..++...+++ +..++..+.-=|...=--|+.+++++++-... +.+.|+|=|.+.|+
T Consensus 80 l~~~~Gvi~~~~~~~~i~v~e~~P~~vKk~~tG~G~A~KeqV~~mv~~~l~~~~~--~~~~d~aDAlaiA~ 148 (154)
T cd00529 80 LGQARGALILALANRNLPVFEYTPNQVKKAVTGYGKADKDQVQHMVKRLLNLSEI--PKPDDAADALAVAI 148 (154)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccCeeEEEEECCCCCCHHHHHHHHHHHhCCCCC--CCCCCHHHHHHHHH
Confidence 334555666666666644 55565544322444445788999999986432 12334444444443
No 160
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=45.55 E-value=21 Score=41.43 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=16.5
Q ss_pred cEEEEEcCccceEEEEEE
Q 003784 25 AVSSVDLGSEWLKVAVVN 42 (795)
Q Consensus 25 ~vvGID~GTt~s~va~~~ 42 (795)
.++|||+|||++++++++
T Consensus 3 ~~lgiDiGTts~Ka~l~d 20 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFD 20 (504)
T ss_pred EEEEEecCCCceEEEEEC
Confidence 589999999999999993
No 161
>PRK10331 L-fuculokinase; Provisional
Probab=44.99 E-value=16 Score=41.89 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=16.5
Q ss_pred cEEEEEcCccceEEEEEE
Q 003784 25 AVSSVDLGSEWLKVAVVN 42 (795)
Q Consensus 25 ~vvGID~GTt~s~va~~~ 42 (795)
.++|||+|||++++++++
T Consensus 3 ~~lgID~GTt~~Ka~l~d 20 (470)
T PRK10331 3 VILVLDCGATNVRAIAVD 20 (470)
T ss_pred eEEEEecCCCceEEEEEc
Confidence 589999999999999993
No 162
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=44.56 E-value=49 Score=25.79 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=30.5
Q ss_pred HHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCce
Q 003784 148 YAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAAELAGMNV 191 (795)
Q Consensus 148 ~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~Aa~~AGl~~ 191 (795)
.+.+..+.++... .-.++.|+ ++..+|..+.+.|...||..
T Consensus 3 ~i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 3 DIKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 3444445554433 45679999 89999999999999999865
No 163
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=43.41 E-value=51 Score=36.64 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=21.4
Q ss_pred CCCcEEEEEEecCccceeeEEEEe
Q 003784 213 NESRHVVFYDMGATTTYAALVYFS 236 (795)
Q Consensus 213 ~~~~~vlV~D~GggT~dvsvv~~~ 236 (795)
+..+.+|++|+||..+-+++|++.
T Consensus 72 ~e~g~~LaiD~GGTnlRvc~V~l~ 95 (466)
T COG5026 72 NESGSVLAIDLGGTNLRVCLVVLG 95 (466)
T ss_pred CCCCCEEEEecCCceEEEEEEEeC
Confidence 456889999999999999999886
No 164
>PRK15027 xylulokinase; Provisional
Probab=43.14 E-value=19 Score=41.50 Aligned_cols=17 Identities=35% Similarity=0.561 Sum_probs=15.8
Q ss_pred EEEEEcCccceEEEEEE
Q 003784 26 VSSVDLGSEWLKVAVVN 42 (795)
Q Consensus 26 vvGID~GTt~s~va~~~ 42 (795)
++|||+|||++++++++
T Consensus 2 ~lgID~GTts~Ka~l~d 18 (484)
T PRK15027 2 YIGIDLGTSGVKVILLN 18 (484)
T ss_pred EEEEEecccceEEEEEc
Confidence 78999999999999994
No 165
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=43.02 E-value=27 Score=33.36 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=15.4
Q ss_pred EEEEEcCccceEEEEE
Q 003784 26 VSSVDLGSEWLKVAVV 41 (795)
Q Consensus 26 vvGID~GTt~s~va~~ 41 (795)
|+|||.|++++..|++
T Consensus 2 ILGIDPGl~~~G~av~ 17 (154)
T cd00529 2 ILGIDPGSRNTGYGVI 17 (154)
T ss_pred EEEEccCcCceEEEEE
Confidence 8999999999999998
No 166
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=42.34 E-value=21 Score=40.90 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=16.4
Q ss_pred cEEEEEcCccceEEEEEE
Q 003784 25 AVSSVDLGSEWLKVAVVN 42 (795)
Q Consensus 25 ~vvGID~GTt~s~va~~~ 42 (795)
.++|||+|||++++++++
T Consensus 2 ~ilgiD~GTss~K~~l~d 19 (465)
T TIGR02628 2 VILVLDCGATNLRAIAIN 19 (465)
T ss_pred eEEEEecCCCcEEEEEEc
Confidence 389999999999999994
No 167
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=41.30 E-value=51 Score=26.02 Aligned_cols=31 Identities=23% Similarity=0.249 Sum_probs=27.2
Q ss_pred CcEEEecCCCCCHHHHHHHHHHHHHhCCcee
Q 003784 162 KDFVISVPPYFGQAERKGLMQAAELAGMNVL 192 (795)
Q Consensus 162 ~~~VItVPa~f~~~qR~al~~Aa~~AGl~~~ 192 (795)
..-.++.|+.+++.||+.+...|...||...
T Consensus 16 ~~~eL~Fp~~ls~~eRriih~la~~lGL~~~ 46 (60)
T cd02639 16 MRDELAFPSSLSPAERRIVHLLASRLGLNHV 46 (60)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHcCCceE
Confidence 3567888999999999999999999999763
No 168
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=40.95 E-value=2.8e+02 Score=29.40 Aligned_cols=45 Identities=22% Similarity=0.174 Sum_probs=29.3
Q ss_pred HhCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEE
Q 003784 186 LAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALV 233 (795)
Q Consensus 186 ~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv 233 (795)
..|++ +.+-|+..|+|++-.+... ....+.++++.+|.| +-.+++
T Consensus 95 ~~~~p-V~ieNDa~aaalaE~~~g~-~~~~~~~~~l~~gtG-iG~giv 139 (303)
T PRK13310 95 RLGRD-VRLDNDANCFALSEAWDDE-FTQYPLVMGLILGTG-VGGGLV 139 (303)
T ss_pred HHCCC-eEEeccHhHHHHHHhhhcc-ccCCCcEEEEEecCc-eEEEEE
Confidence 34786 4699999999988543221 123467888889876 445554
No 169
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=40.84 E-value=26 Score=31.80 Aligned_cols=59 Identities=17% Similarity=0.291 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHHHHHHHhC---Cceee---------ecchh-HHHHHH
Q 003784 142 LAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAAELAG---MNVLS---------LVNEH-SGAALQ 204 (795)
Q Consensus 142 ~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~Aa~~AG---l~~~~---------li~Ep-~AAAl~ 204 (795)
++..|+...+.|+...+.++..+.+++ .....+.+.++++.++ +.+-. ++..| -|+|++
T Consensus 48 i~~~i~~a~~~AE~~~k~~i~~v~v~~----g~s~l~~i~~~~~~~~~~~v~v~~~~~~~~~~~~~~~p~~Asa~g 119 (120)
T PF14450_consen 48 ISKAIKIAIEEAERLAKCEIGSVYVSI----GGSKLQNIEELIEKCGGMPVRVAGPNIVEGLPEIVLNPEYASAIG 119 (120)
T ss_dssp HHHHHT--HHHHHHH-HHHH--S--TT----GGGGSTTHHHHHHHHHTS-EEE--GGGSET-HHHHT-GGGHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCeeeEEEecC----chhHHHhHHHHHHHhCCCcEEEccccccCcchhhccCceeeEEEe
Confidence 444455555556655455555565655 3444555666666666 66656 77788 777764
No 170
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=40.78 E-value=3.7e+02 Score=31.21 Aligned_cols=63 Identities=14% Similarity=0.212 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHhcccCCCCCCChhhhhhhh
Q 003784 730 EFQERLDVLKAIGDPVFFRFKELTARPASVEHAQKYLGQLQQIVNDWETNKPWLPKDRTDEVL 792 (795)
Q Consensus 730 ~~~~k~~~L~~~~~~i~~r~~e~~~rp~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~ 792 (795)
.+.+|...|...-..+..|-.+.+.+-+.++.+...+.........--++.+-+|.+|-+..+
T Consensus 91 ~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~eak~~l 153 (514)
T TIGR03319 91 TLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEIL 153 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 456666666666666666666666666666666666666555555556777888888877654
No 171
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=40.69 E-value=74 Score=30.84 Aligned_cols=66 Identities=15% Similarity=0.246 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcch------HHHHHHHHHHHHHHHHHhcccCCCCCCChhhhhhhhh
Q 003784 728 AKEFQERLDVLKAIGDPVFFRFKELTARP------ASVEHAQKYLGQLQQIVNDWETNKPWLPKDRTDEVLF 793 (795)
Q Consensus 728 ~~~~~~k~~~L~~~~~~i~~r~~e~~~rp------~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~ 793 (795)
..++.+++.+|+.-+..+...+......| ..++.++..+..+...+..+......++++|++++..
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~ 152 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEK 152 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 33455555555555555555555555554 5677788888888888888877777799999888753
No 172
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=39.72 E-value=6.7e+02 Score=29.19 Aligned_cols=65 Identities=15% Similarity=0.075 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCCC--ccCCC---CCcchhhHhhHHHHHHHhc
Q 003784 349 RSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRT--ELDRH---LDADEAIVLGASLLAANLS 418 (795)
Q Consensus 349 ~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~--~i~~~---~n~deaVa~GAa~~aa~ls 418 (795)
-+.+.+.++++.. .++.|+|.||-....++++.|.+.+... ++..+ +..|.+++.|++.+....+
T Consensus 232 ~l~~~~~~~~~~~-----g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~ 301 (535)
T PRK09605 232 MLTEVTERALAHT-----GKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKA 301 (535)
T ss_pred HHHHHHHHHHHHh-----CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHc
Confidence 3344444444433 3567999999999999999999665221 33322 2568999999987655443
No 173
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=39.08 E-value=22 Score=36.97 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=15.3
Q ss_pred EEEEEcCccceEEEEE
Q 003784 26 VSSVDLGSEWLKVAVV 41 (795)
Q Consensus 26 vvGID~GTt~s~va~~ 41 (795)
++|||+|||+++++++
T Consensus 2 ~lGIDiGtts~K~vl~ 17 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLM 17 (248)
T ss_pred EEEEEcChhheEEEEE
Confidence 6899999999999999
No 174
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=39.05 E-value=2.9e+02 Score=28.31 Aligned_cols=42 Identities=17% Similarity=0.385 Sum_probs=32.9
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhH
Q 003784 698 KVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQERLDVLKAIGDP 744 (795)
Q Consensus 698 ~~~~~~e~~~i~~~l~e~~~Wl~~~g~~a~~~~~~~k~~~L~~~~~~ 744 (795)
+--+..+..+|.+.-.....||+++. -.+.+|++.|.++++.
T Consensus 210 ~t~~~~qi~Kilnah~~sLqwl~d~s-----t~~e~k~d~i~K~~~~ 251 (254)
T KOG2196|consen 210 KTDPIIQIEKILNAHMDSLQWLDDNS-----TQLEKKLDKIKKLKDD 251 (254)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHhhhcc
Confidence 33456778899999999999999873 4577888888887754
No 175
>PLN02377 3-ketoacyl-CoA synthase
Probab=38.95 E-value=90 Score=36.02 Aligned_cols=56 Identities=11% Similarity=0.050 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEE-ecCccCCHHHHHHHHHHhCCC
Q 003784 339 FEELCEDLWERSLVPLREVLNYSGLKMDEIYAVEL-IGGGTRVPKLQAKLQEYLGRT 394 (795)
Q Consensus 339 fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~L-vGG~sriP~v~~~l~~~f~~~ 394 (795)
++...++..+-+...++++|+++|+++++||.|+. +.+....|.+-.+|.+.+|-.
T Consensus 165 ~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LGlr 221 (502)
T PLN02377 165 MAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYKLR 221 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhCCC
Confidence 44444445555667788999999999999999977 444456899999999999864
No 176
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=38.00 E-value=46 Score=33.49 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=21.6
Q ss_pred CCCcEEEEEEecCccceeeEEEEee
Q 003784 213 NESRHVVFYDMGATTTYAALVYFSA 237 (795)
Q Consensus 213 ~~~~~vlV~D~GggT~dvsvv~~~~ 237 (795)
.+.+.+|++|+||.++-++++++..
T Consensus 60 ~E~G~~LalDlGGTnlRv~~V~L~g 84 (206)
T PF00349_consen 60 NEKGDFLALDLGGTNLRVALVELSG 84 (206)
T ss_dssp TTEEEEEEEEESSSSEEEEEEEEES
T ss_pred CCCceEEEEeecCcEEEEEEEEEcC
Confidence 3457899999999999999999863
No 177
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=37.77 E-value=26 Score=40.60 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=15.8
Q ss_pred EEEEEcCccceEEEEEE
Q 003784 26 VSSVDLGSEWLKVAVVN 42 (795)
Q Consensus 26 vvGID~GTt~s~va~~~ 42 (795)
++|||+|||++++++++
T Consensus 2 ~lgiDiGtt~~K~~l~d 18 (505)
T TIGR01314 2 MIGVDIGTTSTKAVLFE 18 (505)
T ss_pred EEEEeccccceEEEEEc
Confidence 79999999999999994
No 178
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=37.69 E-value=31 Score=39.89 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=15.9
Q ss_pred cEEEEEcCccceEEEEE
Q 003784 25 AVSSVDLGSEWLKVAVV 41 (795)
Q Consensus 25 ~vvGID~GTt~s~va~~ 41 (795)
.++|||+|||+++++++
T Consensus 2 ~~lgiDiGtt~iKa~l~ 18 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVF 18 (493)
T ss_pred eEEEEecCCCceEEEEE
Confidence 48999999999999999
No 179
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.65 E-value=35 Score=31.13 Aligned_cols=22 Identities=32% Similarity=0.714 Sum_probs=18.9
Q ss_pred HHHhhhhcCCCCCHHHHHHHHH
Q 003784 715 AQEWLYTDGEDATAKEFQERLD 736 (795)
Q Consensus 715 ~~~Wl~~~g~~a~~~~~~~k~~ 736 (795)
.++||+++++-.|.++|++|..
T Consensus 91 nE~WleEDe~~iTpE~fk~Rm~ 112 (156)
T COG4296 91 NEDWLEEDEQPITPESFKERMA 112 (156)
T ss_pred hhhhhhccCCccCHHHHHHHhh
Confidence 4679999999999999998764
No 180
>PRK00047 glpK glycerol kinase; Provisional
Probab=37.62 E-value=30 Score=40.05 Aligned_cols=18 Identities=11% Similarity=0.276 Sum_probs=16.5
Q ss_pred cEEEEEcCccceEEEEEE
Q 003784 25 AVSSVDLGSEWLKVAVVN 42 (795)
Q Consensus 25 ~vvGID~GTt~s~va~~~ 42 (795)
.++|||+|||++++++++
T Consensus 6 ~~lgiD~GTts~Ka~l~d 23 (498)
T PRK00047 6 YILALDQGTTSSRAIIFD 23 (498)
T ss_pred EEEEEecCCCceEEEEEC
Confidence 589999999999999983
No 181
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=37.62 E-value=1.2e+02 Score=31.59 Aligned_cols=55 Identities=22% Similarity=0.328 Sum_probs=34.2
Q ss_pred CCccEEEEecCccCCHH----HHHHHHHHhCCC----cc--CCCCCcchhhHhhHHHHHHHhcCC
Q 003784 366 DEIYAVELIGGGTRVPK----LQAKLQEYLGRT----EL--DRHLDADEAIVLGASLLAANLSDG 420 (795)
Q Consensus 366 ~~i~~V~LvGG~sriP~----v~~~l~~~f~~~----~i--~~~~n~deaVa~GAa~~aa~ls~~ 420 (795)
...+.|+|.|-.+|+|- |++.|++.|..- .+ ....-----.|.|||+.|..+++.
T Consensus 272 ~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAnaiAGG 336 (374)
T COG2441 272 TYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANAIAGG 336 (374)
T ss_pred cCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhhhcch
Confidence 45678999999999874 566666665321 11 111111224678999988777754
No 182
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=37.11 E-value=25 Score=41.13 Aligned_cols=17 Identities=24% Similarity=0.184 Sum_probs=16.0
Q ss_pred cEEEEEcCccceEEEEE
Q 003784 25 AVSSVDLGSEWLKVAVV 41 (795)
Q Consensus 25 ~vvGID~GTt~s~va~~ 41 (795)
.++|||+|||+++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~ 18 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAV 18 (536)
T ss_pred eEEEEecCCCceEEEEE
Confidence 48999999999999999
No 183
>PRK07058 acetate kinase; Provisional
Probab=37.09 E-value=2.5e+02 Score=31.28 Aligned_cols=46 Identities=17% Similarity=0.104 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCcc-CCHHHHHHHHHHhC
Q 003784 343 CEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGT-RVPKLQAKLQEYLG 392 (795)
Q Consensus 343 ~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~s-riP~v~~~l~~~f~ 392 (795)
++-+..++.+.|-...... ..+|.|+++||-+ ..+.|++.+.+.+.
T Consensus 298 ~d~f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 298 LDLFALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhhh
Confidence 3445566666665554433 3699999999999 99999999998775
No 184
>PLN02295 glycerol kinase
Probab=36.74 E-value=28 Score=40.42 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=15.8
Q ss_pred EEEEEcCccceEEEEEE
Q 003784 26 VSSVDLGSEWLKVAVVN 42 (795)
Q Consensus 26 vvGID~GTt~s~va~~~ 42 (795)
++|||+|||++++++++
T Consensus 2 vlgID~GTts~Ka~l~d 18 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYD 18 (512)
T ss_pred EEEEecCCCceEEEEEC
Confidence 79999999999999993
No 185
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=36.21 E-value=43 Score=30.27 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCccEEEEecCccCC--HHHHHHHHHHhCCC
Q 003784 348 ERSLVPLREVLNYSGLKMDEIYAVELIGGGTRV--PKLQAKLQEYLGRT 394 (795)
Q Consensus 348 ~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sri--P~v~~~l~~~f~~~ 394 (795)
..+...|+++|+++++.+++|+.|...|-++.. +.=.+.|.+.|+..
T Consensus 25 ~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~~ 73 (119)
T PF02801_consen 25 AALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGDS 73 (119)
T ss_dssp HHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhccc
Confidence 345677999999999999999999999977765 34445677888753
No 186
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=35.78 E-value=26 Score=41.09 Aligned_cols=17 Identities=18% Similarity=0.430 Sum_probs=15.8
Q ss_pred EEEEEcCccceEEEEEE
Q 003784 26 VSSVDLGSEWLKVAVVN 42 (795)
Q Consensus 26 vvGID~GTt~s~va~~~ 42 (795)
++|||+|||++++++++
T Consensus 2 ~lgID~GTts~Ka~l~d 18 (541)
T TIGR01315 2 YIGVDVGTGSARACIID 18 (541)
T ss_pred EEEEEecCcCEEEEEEc
Confidence 79999999999999993
No 187
>PRK02224 chromosome segregation protein; Provisional
Probab=35.53 E-value=2.4e+02 Score=35.29 Aligned_cols=46 Identities=15% Similarity=0.219 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHHHhhcc
Q 003784 646 SLSKEALVDAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFE 691 (795)
Q Consensus 646 ~ls~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~ 691 (795)
.+++.+..++..++-.+..-+.......+++..++...-.++..++
T Consensus 145 ~~~p~~R~~ii~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (880)
T PRK02224 145 NATPSDRQDMIDDLLQLGKLEEYRERASDARLGVERVLSDQRGSLD 190 (880)
T ss_pred cCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888888887666555555555555555555555554444
No 188
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=34.94 E-value=1.3e+02 Score=31.85 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=25.9
Q ss_pred hCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCc
Q 003784 187 AGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGAT 226 (795)
Q Consensus 187 AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~Ggg 226 (795)
.|++ +.+.|+..|+|++-.... ....+.++++-+|.|
T Consensus 96 ~~~p-v~v~NDa~a~a~aE~~~g--~~~~~~~~~l~ig~G 132 (291)
T PRK05082 96 TDLP-TIALNDAQAAAWAEYQAL--PDDIRNMVFITVSTG 132 (291)
T ss_pred hCCC-EEEECcHHHHHHHHHHhc--CCCCCCEEEEEECCC
Confidence 4776 469999999998754322 223467888889865
No 189
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=34.93 E-value=46 Score=32.18 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=17.3
Q ss_pred CCcEEEEEcCccceEEEEE
Q 003784 23 QSAVSSVDLGSEWLKVAVV 41 (795)
Q Consensus 23 ~~~vvGID~GTt~s~va~~ 41 (795)
+|.|+|||-|++++..|++
T Consensus 1 ~m~iLGIDPgl~~tG~avi 19 (164)
T PRK00039 1 MMRILGIDPGLRRTGYGVI 19 (164)
T ss_pred CCEEEEEccccCceeEEEE
Confidence 3679999999999999998
No 190
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=34.73 E-value=72 Score=37.49 Aligned_cols=65 Identities=17% Similarity=0.312 Sum_probs=46.0
Q ss_pred HHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCC-------CC---CHHHHHHHHHHHHHhh
Q 003784 673 AELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGE-------DA---TAKEFQERLDVLKAIG 742 (795)
Q Consensus 673 ~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~g~-------~a---~~~~~~~k~~~L~~~~ 742 (795)
-.+..+|+..|-.+|..+.+ +.++....+++++.|++.... .+ ..++...+.++|.+.+
T Consensus 651 ~k~~d~~~~~i~~~r~~~~~-----------~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~~pv~~~e~~~~~~~l~~~~ 719 (727)
T KOG0103|consen 651 PKAFDELGKKIQEIRKAIES-----------EMEKVLLEIEEAEKWLERKSNKQNKLSKTADPVPSSEIESEAKELNNTC 719 (727)
T ss_pred hHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCchHHHHHhhhhhcccc
Confidence 34555555555555554432 668888999999999987421 12 3488899999999999
Q ss_pred hHHHHH
Q 003784 743 DPVFFR 748 (795)
Q Consensus 743 ~~i~~r 748 (795)
.||..+
T Consensus 720 ~~i~~~ 725 (727)
T KOG0103|consen 720 SDIISK 725 (727)
T ss_pred cccccc
Confidence 998765
No 191
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=34.73 E-value=50 Score=33.26 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCc---eeeecchhHHHHHHhhh
Q 003784 169 PPYFGQAERKGLMQAAELAGMN---VLSLVNEHSGAALQYGI 207 (795)
Q Consensus 169 Pa~f~~~qR~al~~Aa~~AGl~---~~~li~Ep~AAAl~y~~ 207 (795)
|..-...-.+.+.+|....|++ ++.++|+.+|..++.++
T Consensus 163 ~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y 204 (206)
T PF00349_consen 163 SGVVGKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAY 204 (206)
T ss_dssp BTGTTSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHT
T ss_pred cCCCCCccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhc
Confidence 3333344466777887878875 57899999998776543
No 192
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=34.34 E-value=1.4e+02 Score=28.81 Aligned_cols=44 Identities=18% Similarity=0.214 Sum_probs=30.0
Q ss_pred hCCceeeecchhHHHHHHhhhcCCCCCCCcEEEEEEecCccceeeEE
Q 003784 187 AGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALV 233 (795)
Q Consensus 187 AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsvv 233 (795)
.++++ .+.|+..|+|++....... ...+.++++-+|.| .-.+++
T Consensus 91 ~~~pv-~i~Nd~~~~a~ae~~~~~~-~~~~~~~~l~ig~G-iG~~ii 134 (179)
T PF00480_consen 91 FGVPV-IIENDANAAALAEYWFGAA-KDCDNFLYLYIGTG-IGAGII 134 (179)
T ss_dssp HTSEE-EEEEHHHHHHHHHHHHSTT-TTTSSEEEEEESSS-EEEEEE
T ss_pred cceEE-EEecCCCcceeehhhcCcc-CCcceEEEEEeecC-CCccee
Confidence 46654 7999999999987664322 23467888888876 455555
No 193
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=34.25 E-value=1.3e+02 Score=33.79 Aligned_cols=54 Identities=28% Similarity=0.364 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhC
Q 003784 339 FEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLG 392 (795)
Q Consensus 339 fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~ 392 (795)
++++.+-+++.+..++.+.+.++++.+++|..+.++|-.+..-++.-.=-+.++
T Consensus 55 ~~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLllGl~~~~L~ 108 (412)
T PF14574_consen 55 LEELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLLGLDPEGLG 108 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHHT---GGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHcCCChHHhc
Confidence 455566677888899999999999999999999999977655444433333333
No 194
>PRK13317 pantothenate kinase; Provisional
Probab=34.14 E-value=35 Score=36.06 Aligned_cols=18 Identities=17% Similarity=0.280 Sum_probs=16.5
Q ss_pred CcEEEEEcCccceEEEEE
Q 003784 24 SAVSSVDLGSEWLKVAVV 41 (795)
Q Consensus 24 ~~vvGID~GTt~s~va~~ 41 (795)
...||||.|+|.+++++.
T Consensus 2 ~~~iGIDiGstt~K~v~~ 19 (277)
T PRK13317 2 EMKIGIDAGGTLTKIVYL 19 (277)
T ss_pred CceEEEEeCcccEEEEEE
Confidence 468999999999999998
No 195
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=33.04 E-value=40 Score=31.20 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=13.9
Q ss_pred EEEEcCccceEEEEE
Q 003784 27 SSVDLGSEWLKVAVV 41 (795)
Q Consensus 27 vGID~GTt~s~va~~ 41 (795)
+|||||+..+.+|+.
T Consensus 1 laiD~G~kriGvA~~ 15 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQ 15 (130)
T ss_pred CeEccCCCeEEEEEE
Confidence 599999999999987
No 196
>PLN02939 transferase, transferring glycosyl groups
Probab=32.59 E-value=4e+02 Score=33.32 Aligned_cols=122 Identities=19% Similarity=0.229 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHHHhhccCc-cccccCCCHHHHHHHHHHHHHHHHhhhhcCCC
Q 003784 647 LSKEALVDAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETS-EDYEKVSTSEERQSFVEKLDEAQEWLYTDGED 725 (795)
Q Consensus 647 ls~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~-~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~g~~ 725 (795)
+-+++++.++.++.+...-|+....++.-+.-|++++-++..++-.. ++..+. .+=+.+.+-++++.....|+--...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (977)
T PLN02939 237 LLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKL-SPLQYDCWWEKVENLQDLLDRATNQ 315 (977)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888888888899999999999999999998888877321 112222 2222334455555444444421111
Q ss_pred C--------CHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHH
Q 003784 726 A--------TAKEFQERLDVLKAIGDPVFFRFKELTARPASVEHAQKYLGQLQQIV 773 (795)
Q Consensus 726 a--------~~~~~~~k~~~L~~~~~~i~~r~~e~~~rp~a~~~~~~~~~~~~~~~ 773 (795)
+ .-+++.+|.+.|+.... +.+-++.++..++.+++++...+..+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (977)
T PLN02939 316 VEKAALVLDQNQDLRDKVDKLEASLK----EANVSKFSSYKVELLQQKLKLLEERL 367 (977)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHH----HhhHhhhhHHHHHHHHHHHHHHHHHH
Confidence 1 12344455555443322 22223345555555555554444443
No 197
>PRK04123 ribulokinase; Provisional
Probab=32.53 E-value=33 Score=40.23 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=16.1
Q ss_pred cEEEEEcCccceEEEEE
Q 003784 25 AVSSVDLGSEWLKVAVV 41 (795)
Q Consensus 25 ~vvGID~GTt~s~va~~ 41 (795)
.++|||+|||+++++++
T Consensus 4 ~~lgiD~GTts~Ka~l~ 20 (548)
T PRK04123 4 YVIGLDFGTDSVRALLV 20 (548)
T ss_pred EEEEEecCCCceEEEEE
Confidence 58999999999999999
No 198
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=32.48 E-value=61 Score=22.67 Aligned_cols=14 Identities=29% Similarity=0.313 Sum_probs=7.4
Q ss_pred CchhhHHHHHHHHH
Q 003784 1 MKRMLLKLLTFLSV 14 (795)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (795)
||.+.+.++.+++.
T Consensus 1 Mk~l~~a~~l~lLa 14 (36)
T PF08194_consen 1 MKCLSLAFALLLLA 14 (36)
T ss_pred CceeHHHHHHHHHH
Confidence 78776644333333
No 199
>PRK10869 recombination and repair protein; Provisional
Probab=32.11 E-value=7.1e+02 Score=29.27 Aligned_cols=62 Identities=13% Similarity=0.090 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhHHHHHH----HHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHH
Q 003784 650 EALVDAEAKLEELDKKDAD----RRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQ 716 (795)
Q Consensus 650 ~~~~~~~~~~~~~~~~D~~----~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~ 716 (795)
+.+..+...+..+...|.. ....+++...||...+.+|+.+++-+ .+|++.+.+.+-|....
T Consensus 244 ~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~-----~dp~~l~~ie~Rl~~l~ 309 (553)
T PRK10869 244 SQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLD-----LDPNRLAELEQRLSKQI 309 (553)
T ss_pred HHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCHHHHHHHHHHHHHHH
Confidence 3455666666666555543 34456677778888888887776421 24555555555444433
No 200
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=31.63 E-value=1.5e+02 Score=28.11 Aligned_cols=18 Identities=22% Similarity=0.108 Sum_probs=13.9
Q ss_pred EEEEEecCccceeeEEEE
Q 003784 218 VVFYDMGATTTYAALVYF 235 (795)
Q Consensus 218 vlV~D~GggT~dvsvv~~ 235 (795)
||-+|-|-.+|-.++++.
T Consensus 1 ILGIDPgl~~tG~avi~~ 18 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEE 18 (149)
T ss_dssp EEEEE--SSEEEEEEEEE
T ss_pred CEEECCCCCCeeEEEEEe
Confidence 578999999999999964
No 201
>PLN02854 3-ketoacyl-CoA synthase
Probab=30.95 E-value=1.1e+02 Score=35.43 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHCCCCCCCccEEEE-ecCccCCHHHHHHHHHHhCCC
Q 003784 349 RSLVPLREVLNYSGLKMDEIYAVEL-IGGGTRVPKLQAKLQEYLGRT 394 (795)
Q Consensus 349 ~i~~~i~~~l~~a~~~~~~i~~V~L-vGG~sriP~v~~~l~~~f~~~ 394 (795)
-+...++++|+++|+++++||.|++ +.+....|.+-.+|.+.+|-.
T Consensus 191 v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LGlr 237 (521)
T PLN02854 191 VMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYKLR 237 (521)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhCCC
Confidence 3456677889999999999999987 344445899999999999864
No 202
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=30.61 E-value=1.5e+02 Score=31.56 Aligned_cols=49 Identities=24% Similarity=0.293 Sum_probs=30.0
Q ss_pred CccEEEEecCccCCHHHHHHHHHHhCC--------CccCCCCCcchhhHhhHHHHHH
Q 003784 367 EIYAVELIGGGTRVPKLQAKLQEYLGR--------TELDRHLDADEAIVLGASLLAA 415 (795)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~--------~~i~~~~n~deaVa~GAa~~aa 415 (795)
+.+.|+|-||.+..|.+.+.|++.+.. .++....-.+.+.++|||..+.
T Consensus 245 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~l 301 (303)
T PRK13310 245 DPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLHL 301 (303)
T ss_pred CCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHhh
Confidence 556788877766666555655555421 1233334456789999997753
No 203
>PLN03170 chalcone synthase; Provisional
Probab=30.21 E-value=2.5e+02 Score=31.51 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCcc-CCHHHHHHHHHHhCCC
Q 003784 344 EDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGT-RVPKLQAKLQEYLGRT 394 (795)
Q Consensus 344 ~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~s-riP~v~~~l~~~f~~~ 394 (795)
+...+-..+..+++|+++|+++++|+.|+.+-.+. .+|.+--.|.+.+|-.
T Consensus 104 ~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~ 155 (401)
T PLN03170 104 VEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLR 155 (401)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhCcC
Confidence 33445567778999999999999999988776544 6999999999999864
No 204
>PLN03172 chalcone synthase family protein; Provisional
Probab=30.18 E-value=1.5e+02 Score=33.19 Aligned_cols=51 Identities=12% Similarity=0.099 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCcc-CCHHHHHHHHHHhCCC
Q 003784 344 EDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGT-RVPKLQAKLQEYLGRT 394 (795)
Q Consensus 344 ~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~s-riP~v~~~l~~~f~~~ 394 (795)
+...+-..+.++++|+++++.+++|+.|+++..+. .+|.+--.|.+.+|-.
T Consensus 100 ~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LGl~ 151 (393)
T PLN03172 100 VEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLK 151 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhCCC
Confidence 34445566778899999999999999998776554 6999999999999864
No 205
>PLN02669 xylulokinase
Probab=29.21 E-value=43 Score=39.33 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=18.1
Q ss_pred CCCcEEEEEcCccceEEEEEE
Q 003784 22 SQSAVSSVDLGSEWLKVAVVN 42 (795)
Q Consensus 22 ~~~~vvGID~GTt~s~va~~~ 42 (795)
....+||||+||+.+++++++
T Consensus 6 ~~~~~LGiD~GT~s~Ka~l~d 26 (556)
T PLN02669 6 EDSLFLGFDSSTQSLKATVLD 26 (556)
T ss_pred CCCeEEEEecccCCeEEEEEc
Confidence 345699999999999999993
No 206
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=28.90 E-value=5.2e+02 Score=24.90 Aligned_cols=69 Identities=14% Similarity=0.040 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHCCCC-----CCCccEEEEecCccCCHHHHHHHHHHhCCCccCCCCCcchhhHhhHHHHHHHhc
Q 003784 348 ERSLVPLREVLNYSGLK-----MDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLS 418 (795)
Q Consensus 348 ~~i~~~i~~~l~~a~~~-----~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deaVa~GAa~~aa~ls 418 (795)
.+....+..++...+++ +..++..+.--|...=--|+.+++.+++-... +.+.|+|=|++.|+..+...
T Consensus 83 ~~arGvi~la~~~~~ipv~ey~P~~VKk~vtG~G~A~K~qV~~mv~~~l~l~~~--~~~~D~aDAlAiA~~h~~~~ 156 (164)
T PRK00039 83 GQARGVAILAAAQRGLPVAEYTPLQVKKAVVGYGRADKEQVQHMVKRLLNLPEI--PKPDDAADALAIAICHAHRR 156 (164)
T ss_pred HHHHHHHHHHHHHcCCCEEEECHHHhhhhhcCCCCCCHHHHHHHHHHHhCCCCC--CCCCCHHHHHHHHHHHHhhc
Confidence 34555666666666654 44444433222444445788999999976432 23347777777777666543
No 207
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=28.70 E-value=9.9e+02 Score=28.05 Aligned_cols=65 Identities=14% Similarity=0.126 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHh-H-HHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhh
Q 003784 650 EALVDAEAKLEEL-D-KKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWL 719 (795)
Q Consensus 650 ~~~~~~~~~~~~~-~-~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~Wl 719 (795)
..+..+.+.+..+ . .-........++...||...+.+++.+++- -..|++.+.+.+.+.....-.
T Consensus 251 ~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l-----~~dp~~L~ele~RL~~l~~Lk 317 (563)
T TIGR00634 251 EGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYLDEL-----EFDPERLNEIEERLAQIKRLK 317 (563)
T ss_pred HHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHH
Confidence 4555666666654 1 112333445667777888888888877642 135666666666666555533
No 208
>PRK00877 hisD bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
Probab=28.17 E-value=59 Score=36.38 Aligned_cols=48 Identities=33% Similarity=0.521 Sum_probs=38.9
Q ss_pred CCcEEEecCCCCCHHHHHHHHHHHHHhCCceeeecchhHH-HHHHhhhcC
Q 003784 161 VKDFVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSG-AALQYGIDK 209 (795)
Q Consensus 161 ~~~~VItVPa~f~~~qR~al~~Aa~~AGl~~~~li~Ep~A-AAl~y~~~~ 209 (795)
+.++|++-|+. +..---.++-||+++|.+.+--+--..| ||++||...
T Consensus 151 V~~Iv~~TPp~-~g~i~p~vL~AA~~~Gv~eIy~vGGAQAIAAlAyGTet 199 (425)
T PRK00877 151 VKEIVMVTPPP-DGEINPAILAAAALAGVDEVYKVGGAQAIAALAYGTES 199 (425)
T ss_pred CCeEEEEeCCC-CCCCCHHHHHHHHHcCCCeeeccCCHHHHHHHHcCCCC
Confidence 56899999985 4334456888999999999888888888 899999754
No 209
>PF11466 Doppel: Prion-like protein Doppel; InterPro: IPR021566 Dpl is a homologue related to the prion protein (PrP). Dpl is toxic to neurons and is expressed in the brains of mice that do not express PrP. In DHPC and SDS micelles, Dpl shoes about 40% alpha-helical structure however in aqueous solution it consists of a random coil. The alpha helical segment can adopt a transmembrane localisation also in a membrane. The unprocessed Dpl protein is thought to posses a possible channel formation mechanism which may be related to toxicity through direct interaction with cell membranes and damage to the cell membrane. ; PDB: 1Z65_A.
Probab=27.94 E-value=44 Score=22.01 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=8.7
Q ss_pred Cchhh-HHHHHHHHHHHhh
Q 003784 1 MKRML-LKLLTFLSVASLL 18 (795)
Q Consensus 1 ~~~~~-~~~~~~~~~~~~~ 18 (795)
||+.| .|+++++++++++
T Consensus 1 Mrk~Lg~~~lAi~c~LL~s 19 (30)
T PF11466_consen 1 MRKHLGGWWLAIVCVLLFS 19 (30)
T ss_dssp --SS-SSHHHHHHHHHHHH
T ss_pred CccchhhHHHHHHHHHHHH
Confidence 67666 4555555555554
No 210
>PF00815 Histidinol_dh: Histidinol dehydrogenase; InterPro: IPR012131 Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His []. The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules []. By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme []. A Cys residue has been implicated in the catalytic mechanism of the second oxidative step []. In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast [].; GO: 0004399 histidinol dehydrogenase activity, 0008270 zinc ion binding, 0051287 NAD binding, 0000105 histidine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1KAE_B 1K75_A 1KAH_A 1KAR_B.
Probab=27.88 E-value=91 Score=34.80 Aligned_cols=75 Identities=24% Similarity=0.381 Sum_probs=40.0
Q ss_pred EEEEeCCCc-cccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceeeecchhHH-HHH
Q 003784 126 VSFKIDENN-NFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSG-AAL 203 (795)
Q Consensus 126 ~~~~~~~~~-~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~Aa~~AGl~~~~li~Ep~A-AAl 203 (795)
+++-+++|+ .+.-.-++..+-.++- | +.++|++-|+.-+..---.++-||.++|.+.+--+--..| ||+
T Consensus 110 vG~YVPGG~a~~pStvlM~aiPA~vA-------G--V~~Iv~~TPp~~~G~i~p~vL~Aa~~~Gv~evy~vGGaqAIAAl 180 (412)
T PF00815_consen 110 VGLYVPGGRAPYPSTVLMTAIPAKVA-------G--VKEIVVCTPPPKDGKINPAVLAAAHLAGVDEVYKVGGAQAIAAL 180 (412)
T ss_dssp EEEE---SSS--THHHHHHHHHHHHH-------T---SEEEEEE-SS------HHHHHHHHHTT-SEEEE--HHHHHHHH
T ss_pred eEEEccCCCCCccHHHHHcccchhhc-------C--CCeEEEEcCCCccCCCCHHHHHHHHHcCCCEEEecccHHHHHHH
Confidence 445556664 3433444444433322 2 5689999998875555678899999999999888888888 789
Q ss_pred HhhhcC
Q 003784 204 QYGIDK 209 (795)
Q Consensus 204 ~y~~~~ 209 (795)
+||...
T Consensus 181 AyGTet 186 (412)
T PF00815_consen 181 AYGTET 186 (412)
T ss_dssp HH--SS
T ss_pred HcCCCC
Confidence 999653
No 211
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=27.75 E-value=94 Score=34.34 Aligned_cols=48 Identities=17% Similarity=0.120 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhC
Q 003784 343 CEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLG 392 (795)
Q Consensus 343 ~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~ 392 (795)
++.....+...|+++|+++++++++|+++++.+++.++- ...++++||
T Consensus 266 ~~~~~~~~~~~i~~~L~~~gl~~~dId~~~~Hq~~~~~~--d~~~~~llg 313 (372)
T PRK07515 266 FKEVCPMVAEHIVEHLAENGLTPADVKRFWLHQANINMN--QLIGKKVLG 313 (372)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHHH--HHHHHHhcc
Confidence 345566677889999999999999999999999997743 223344455
No 212
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=27.74 E-value=61 Score=30.74 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=14.2
Q ss_pred EEEEEcCccceEEEEEEe
Q 003784 26 VSSVDLGSEWLKVAVVNL 43 (795)
Q Consensus 26 vvGID~GTt~s~va~~~~ 43 (795)
|+|||-|++++..|++..
T Consensus 1 ILGIDPgl~~tG~avi~~ 18 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEE 18 (149)
T ss_dssp EEEEE--SSEEEEEEEEE
T ss_pred CEEECCCCCCeeEEEEEe
Confidence 699999999999999943
No 213
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=27.56 E-value=51 Score=36.44 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=16.0
Q ss_pred cEEEEEcCccceEEEEE
Q 003784 25 AVSSVDLGSEWLKVAVV 41 (795)
Q Consensus 25 ~vvGID~GTt~s~va~~ 41 (795)
.++|||.|+|.+++.++
T Consensus 3 y~lGIDIGSTsTKaVVm 19 (432)
T TIGR02259 3 CFVGIDLGSTTTKAVLM 19 (432)
T ss_pred eEEEEEcCchhEEEEEE
Confidence 58999999999999998
No 214
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=27.55 E-value=25 Score=39.55 Aligned_cols=53 Identities=26% Similarity=0.270 Sum_probs=40.8
Q ss_pred CCccEEEEecCccCCHHHHHHHHHHhCC------C--------ccCCCCCcchhhHhhHHHHHHHhc
Q 003784 366 DEIYAVELIGGGTRVPKLQAKLQEYLGR------T--------ELDRHLDADEAIVLGASLLAANLS 418 (795)
Q Consensus 366 ~~i~~V~LvGG~sriP~v~~~l~~~f~~------~--------~i~~~~n~deaVa~GAa~~aa~ls 418 (795)
+-.++|.+|||+...|.+...|++..-. . +..+.+||...+=.|||++|..-.
T Consensus 525 Kl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~ 591 (618)
T KOG0797|consen 525 KLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDF 591 (618)
T ss_pred hhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHH
Confidence 3457899999999999999999987642 1 113447888888899999987643
No 215
>PLN03173 chalcone synthase; Provisional
Probab=27.39 E-value=1.8e+02 Score=32.53 Aligned_cols=50 Identities=12% Similarity=0.111 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCccEEEEecCcc-CCHHHHHHHHHHhCCC
Q 003784 345 DLWERSLVPLREVLNYSGLKMDEIYAVELIGGGT-RVPKLQAKLQEYLGRT 394 (795)
Q Consensus 345 ~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~s-riP~v~~~l~~~f~~~ 394 (795)
...+-..+.++++|+++|+.+++|+.|+.+..+. ..|.+--.|.+.+|-.
T Consensus 101 ~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LGl~ 151 (391)
T PLN03173 101 EVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLR 151 (391)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhCCC
Confidence 3445556778899999999999999998876554 5899999999999864
No 216
>PF13941 MutL: MutL protein
Probab=27.21 E-value=29 Score=39.29 Aligned_cols=33 Identities=18% Similarity=0.135 Sum_probs=0.0
Q ss_pred hHHHHHHhhhcCCCCCCCcEEEEEEecCcccee
Q 003784 198 HSGAALQYGIDKDFSNESRHVVFYDMGATTTYA 230 (795)
Q Consensus 198 p~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dv 230 (795)
||.+|+.-+...--......+|++|+||-|||+
T Consensus 230 PTP~AVl~~~~lla~~~~g~llvVDIGGATTDV 262 (457)
T PF13941_consen 230 PTPAAVLRAAELLAEGGIGDLLVVDIGGATTDV 262 (457)
T ss_pred CCHHHHHHHHHHHHhcccCCEEEEEccCcccch
No 217
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.48 E-value=1.2e+02 Score=31.43 Aligned_cols=82 Identities=16% Similarity=0.126 Sum_probs=45.4
Q ss_pred EEEEEEecCccceeeEEEEeeccccc--------------cCeeeecCeEEEEEeccCCCCchHHHHHHHHHHHHHHHhh
Q 003784 217 HVVFYDMGATTTYAALVYFSAYNAKV--------------YGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNK 282 (795)
Q Consensus 217 ~vlV~D~GggT~dvsvv~~~~~~~~~--------------~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~ 282 (795)
++|++|+|.||.|+-.+.-...+.-. .+.......+-+.+. ..||--.+.++.+|+..
T Consensus 2 kila~DvG~GTqDi~~~d~~~EnSl~mVmPspt~~~A~R~R~~~~~g~~l~l~G~----~MGGGp~travrrhlk~---- 73 (342)
T COG4012 2 KILAIDVGVGTQDIVAYDGDPENSLRMVMPSPTSTLAQRLRFMLREGPYLALIGV----PMGGGPTTRAVRRHLKK---- 73 (342)
T ss_pred ceEEEEecCCceeEEEecCCcccceeEeecCchHHHHHHHHHHhccCCcEEEEee----ecCCChhhHHHHHHHhc----
Confidence 58999999999998776321100000 000000112222222 67899999999988863
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 003784 283 QVGNGVDVRKSPKAMAKLKKQVKRTKEI 310 (795)
Q Consensus 283 ~~~~~~~~~~~~~~~~~L~~~~e~~K~~ 310 (795)
+..+-...++...+.+..|++++.
T Consensus 74 ----G~rVyatedAAlT~hddleRv~em 97 (342)
T COG4012 74 ----GTRVYATEDAALTLHDDLERVEEM 97 (342)
T ss_pred ----CCeeEechhhhhhhhcCHHHHHhh
Confidence 233333445555566666666543
No 218
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=26.36 E-value=1.4e+02 Score=29.26 Aligned_cols=58 Identities=21% Similarity=0.329 Sum_probs=36.1
Q ss_pred hHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCC-CCHHHHHHHHHHHHHhhhHHHHH
Q 003784 681 GYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGED-ATAKEFQERLDVLKAIGDPVFFR 748 (795)
Q Consensus 681 s~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~g~~-a~~~~~~~k~~~L~~~~~~i~~r 748 (795)
.|+-++|..|.+ .+++|| .+.++.++++++|.+++ .+.++..+.+-.-+.+...+..-
T Consensus 5 efL~~L~~~L~~-------lp~~e~---~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~ 63 (181)
T PF08006_consen 5 EFLNELEKYLKK-------LPEEER---EEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAE 63 (181)
T ss_pred HHHHHHHHHHHc-------CCHHHH---HHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 455555555542 355554 44577888888876543 57777777777667766666543
No 219
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=26.00 E-value=56 Score=37.46 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=20.0
Q ss_pred CCcEEEEEcCccceEEEEEEeeCC
Q 003784 23 QSAVSSVDLGSEWLKVAVVNLKPG 46 (795)
Q Consensus 23 ~~~vvGID~GTt~s~va~~~~~~g 46 (795)
...++|||.|||.+++++++.++|
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~ 28 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNG 28 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCC
Confidence 456999999999999999964455
No 220
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=25.97 E-value=2.9e+02 Score=28.09 Aligned_cols=45 Identities=18% Similarity=0.157 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHCCCCCCCccEEEEecCccC--CHHHHHHHHHHhCC
Q 003784 349 RSLVPLREVLNYSGLKMDEIYAVELIGGGTR--VPKLQAKLQEYLGR 393 (795)
Q Consensus 349 ~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sr--iP~v~~~l~~~f~~ 393 (795)
-....++++|+++++++++|+.|++.....- .|.+...|...+|-
T Consensus 10 l~~~A~~~al~~ag~~~~~i~~li~~~~~~~~~~~~~a~~i~~~lg~ 56 (254)
T cd00327 10 LGFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGI 56 (254)
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEEEECCCCccccHHHHHHHHHhCC
Confidence 3456778899999999999999987665443 58888889999986
No 221
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=25.96 E-value=5.1e+02 Score=23.63 Aligned_cols=96 Identities=18% Similarity=0.199 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHHHhhc--cCc-cc----cccCCCHHHHHHHHHHHHHHHHh
Q 003784 646 SLSKEALVDAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKF--ETS-ED----YEKVSTSEERQSFVEKLDEAQEW 718 (795)
Q Consensus 646 ~ls~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l--~~~-~~----~~~~~~~~e~~~i~~~l~e~~~W 718 (795)
+.|-++=+++.+..+-....+..+.+...+|+.+|.+--..-+-+ +++ ++ ..++.-.--+..+..+|++.
T Consensus 13 ~Vt~EDQq~iN~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~--- 89 (131)
T KOG1760|consen 13 KVTFEDQQNINEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEK--- 89 (131)
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHH---
Confidence 456677777777777777888899999999999988753332221 222 11 11111122234444444444
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHhhhHHHHHHHhhh
Q 003784 719 LYTDGEDATAKEFQERLDVLKAIGDPVFFRFKELT 753 (795)
Q Consensus 719 l~~~g~~a~~~~~~~k~~~L~~~~~~i~~r~~e~~ 753 (795)
++...+.+..|++-...|..|+.+.+
T Consensus 90 ---------ke~l~k~i~~les~~e~I~~~m~~LK 115 (131)
T KOG1760|consen 90 ---------KETLEKEIEELESELESISARMDELK 115 (131)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666777777777777765543
No 222
>PF04614 Pex19: Pex19 protein family; InterPro: IPR006708 Peroxisome(s) form an intracellular compartment, bounded by a typical lipid bilayer membrane. Peroxisome functions are often specialised by organism and cell type; two widely distributed and well-conserved functions are H2O2-based respiration and fatty acid beta-oxidation. Other functions include ether lipid (plasmalogen) synthesis and cholesterol synthesis in animals, the glyoxylate cycle in germinating seeds ("glyoxysomes"), photorespiration in leaves, glycolysis in trypanosomes ("glycosomes"), and methanol and/or amine oxidation and assimilation in some yeasts. PEX genes encode the machinery ("peroxins") required to assemble the peroxisome. Membrane assembly and maintenance requires three of these (peroxins 3, 16, and 19) and may occur without the import of the matrix (lumen) enzymes. Matrix protein import follows a branched pathway of soluble recycling receptors, with one branch for each class of peroxisome targeting sequence (two are well characterised), and a common trunk for all. At least one of these receptors, Pex5p, enters and exits peroxisomes as it functions. Proliferation of the organelle is regulated by Pex11p. Peroxisome biogenesis is remarkably conserved among eukaryotes. A group of fatal, inherited neuropathologies are recognised as peroxisome biogenesis diseases. ; GO: 0005777 peroxisome; PDB: 2WL8_B 2W85_B.
Probab=25.14 E-value=3.3e+02 Score=28.24 Aligned_cols=68 Identities=13% Similarity=0.246 Sum_probs=44.0
Q ss_pred HHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhHHHHHHHh
Q 003784 675 LKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQERLDVLKAIGDPVFFRFKE 751 (795)
Q Consensus 675 akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~g~~a~~~~~~~k~~~L~~~~~~i~~r~~e 751 (795)
--..++.++-.|...|-+.+. =.+-++++.+.+-.||.++....+.++|. |+..=..++..|...+..
T Consensus 120 ~~~~~~~~l~~mm~qL~SKev--------LYePmKel~~kyP~wL~~n~~~l~~ed~~-rY~~Q~~~v~~I~~~fE~ 187 (248)
T PF04614_consen 120 GDEDFDKMLQGMMQQLLSKEV--------LYEPMKELRDKYPEWLEENKSKLSAEDYE-RYEKQYELVKEICAIFEK 187 (248)
T ss_dssp -----HHHHHHHHHHHTSHHH--------HHHHHHHHHHHHHHHHHHHCCCS-HHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhccHhh--------hhhhHHHHHHHhHHHHHhCcCcCCHHHHH-HHHHHHHHHHHHHHHHcC
Confidence 344566666666666654321 12568899999999999998888888765 666666666677776554
No 223
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=24.61 E-value=4.4e+02 Score=31.66 Aligned_cols=68 Identities=22% Similarity=0.301 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHHhH-HHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhh
Q 003784 647 LSKEALVDAEAKLEELD-KKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLY 720 (795)
Q Consensus 647 ls~~~~~~~~~~~~~~~-~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~ 720 (795)
++..++......+.... .......+..+....+|.-+-.+..+|... -.+++.+.+.+.++++..=+.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~------~~~e~i~~l~e~l~~l~~~l~ 438 (650)
T TIGR03185 370 LSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTI------PSEEQIAQLLEELGEAQNELF 438 (650)
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHHHHHHHH
Confidence 55565555544444433 223344444555556666666666666532 123444555555555544443
No 224
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=24.53 E-value=1e+02 Score=29.01 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=17.0
Q ss_pred CcEEEEEcCccceEEEEEE
Q 003784 24 SAVSSVDLGSEWLKVAVVN 42 (795)
Q Consensus 24 ~~vvGID~GTt~s~va~~~ 42 (795)
|.+++||.|+-|...+++.
T Consensus 1 mii~sIDiGikNlA~~iie 19 (143)
T PF04848_consen 1 MIILSIDIGIKNLAYCIIE 19 (143)
T ss_pred CeEEEEecCCCceeEEEEE
Confidence 4689999999999999984
No 225
>COG0141 HisD Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=24.48 E-value=59 Score=36.09 Aligned_cols=48 Identities=31% Similarity=0.488 Sum_probs=38.0
Q ss_pred CCcEEEecCCCCCHHHHHHHHHHHHHhCCceeeecchhHH-HHHHhhhcC
Q 003784 161 VKDFVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSG-AALQYGIDK 209 (795)
Q Consensus 161 ~~~~VItVPa~f~~~qR~al~~Aa~~AGl~~~~li~Ep~A-AAl~y~~~~ 209 (795)
+.++|++.|+.=+. --..++-||+++|.+-+-.+--.-| ||++||...
T Consensus 147 v~~Iv~~tPp~~~g-v~p~iL~AA~~~Gv~eIy~vGGAQAIAAlAYGTet 195 (425)
T COG0141 147 VEEIVVVTPPPKDG-VNPEILAAARLAGVDEVYKVGGAQAIAALAYGTET 195 (425)
T ss_pred CceEEEECCCCCCC-CCHHHHHHHHHhCcHHHHHccCHHHHHHHHccCCc
Confidence 56899999988432 3456889999999998878888777 799999653
No 226
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=24.37 E-value=2.9e+02 Score=34.69 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHH
Q 003784 664 KKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSF 708 (795)
Q Consensus 664 ~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~i 708 (795)
+...-+.+.+++.-.|+.+|-++|+.|.++. .++++.+++
T Consensus 1458 ~a~as~~q~~~s~~el~~Li~~v~~Flt~~~-----adp~si~~v 1497 (1758)
T KOG0994|consen 1458 QANASRSQMEESNRELRNLIQQVRDFLTQPD-----ADPDSIEEV 1497 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCHHHHHHH
Confidence 3344445556677788889999999997642 445544443
No 227
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=24.23 E-value=57 Score=28.41 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=9.4
Q ss_pred chhhHHHHHHHHHHHhh
Q 003784 2 KRMLLKLLTFLSVASLL 18 (795)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (795)
|.+||+.|+|++++|++
T Consensus 4 K~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 4 KAFLLLGLLLAALLLIS 20 (95)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 56666666655544443
No 228
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=24.00 E-value=1.1e+02 Score=32.12 Aligned_cols=49 Identities=18% Similarity=0.120 Sum_probs=36.5
Q ss_pred CCCCccEEEEecCccCCHHHHHHHHHHh---CCCccCCCCCcchhhHhhHHH
Q 003784 364 KMDEIYAVELIGGGTRVPKLQAKLQEYL---GRTELDRHLDADEAIVLGASL 412 (795)
Q Consensus 364 ~~~~i~~V~LvGG~sriP~v~~~l~~~f---~~~~i~~~~n~deaVa~GAa~ 412 (795)
-+..+|.|+|+||..+...+-++|.+.. ..-.+...-|-.+|.|.||..
T Consensus 293 L~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 293 LKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred cCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 3568999999999999999999998765 322333344556789999863
No 229
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=23.41 E-value=1.2e+02 Score=33.01 Aligned_cols=43 Identities=19% Similarity=0.343 Sum_probs=36.3
Q ss_pred HHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhHHHHHHHhhhcc
Q 003784 711 KLDEAQEWLYTDGEDATAKEFQERLDVLKAIGDPVFFRFKELTAR 755 (795)
Q Consensus 711 ~l~e~~~Wl~~~g~~a~~~~~~~k~~~L~~~~~~i~~r~~e~~~r 755 (795)
.|++.++||-++ +. +++.+.+++.+-++-+-||.-++.|+-.-
T Consensus 9 ~LeeLe~kLa~~-d~-~Kd~V~~~I~ea~~sILPlRL~FNeFi~t 51 (379)
T PF11593_consen 9 KLEELEEKLASN-DN-SKDSVMDKISEAQDSILPLRLQFNEFIQT 51 (379)
T ss_pred cHHHHHHHHhcC-Cc-hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 578899999854 34 99999999999999999999998887543
No 230
>PRK03918 chromosome segregation protein; Provisional
Probab=23.21 E-value=7.6e+02 Score=30.71 Aligned_cols=22 Identities=23% Similarity=0.113 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHHHHHHHhhhh
Q 003784 700 STSEERQSFVEKLDEAQEWLYT 721 (795)
Q Consensus 700 ~~~~e~~~i~~~l~e~~~Wl~~ 721 (795)
.++++.+.+...++++...+.+
T Consensus 656 ~~~~~~~~l~~~~~~l~~~l~~ 677 (880)
T PRK03918 656 YSEEEYEELREEYLELSRELAG 677 (880)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777776654
No 231
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=22.92 E-value=76 Score=23.75 Aligned_cols=16 Identities=13% Similarity=0.457 Sum_probs=9.9
Q ss_pred CchhhHHHHHHHHHHH
Q 003784 1 MKRMLLKLLTFLSVAS 16 (795)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (795)
|||.+.++++++++.+
T Consensus 2 mKk~i~~i~~~l~~~~ 17 (48)
T PRK10081 2 VKKTIAAIFSVLVLST 17 (48)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 7887766555555444
No 232
>KOG3133 consensus 40 kDa farnesylated protein associated with peroxisomes [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.89 E-value=3.2e+02 Score=28.38 Aligned_cols=64 Identities=16% Similarity=0.218 Sum_probs=46.1
Q ss_pred HhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhHHHHH
Q 003784 676 KNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQERLDVLKAIGDPVFFR 748 (795)
Q Consensus 676 kN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~g~~a~~~~~~~k~~~L~~~~~~i~~r 748 (795)
-|.||.++-.|-..|-..+ +. .+-++++.+.+=.||.++++...++. .+|+++-.++++.|..-
T Consensus 141 ~g~le~~m~~iMqqllSKE----IL----yeplKEl~~~YPkwLeen~e~l~~E~-~erYqkQ~~~i~~i~~~ 204 (267)
T KOG3133|consen 141 SGDLEPIMESIMQQLLSKE----IL----YEPLKELGANYPKWLEENGESLSKED-KERYQKQFELIKEIESV 204 (267)
T ss_pred CccHHHHHHHHHHHHHHHH----Hh----hhhHHHHHHHhhHHHHhcccccCHHH-HHHHHHHHHHHHHHHHH
Confidence 3778888888887776532 11 14578888999999999998775544 55777777777776654
No 233
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=22.68 E-value=6e+02 Score=31.32 Aligned_cols=115 Identities=20% Similarity=0.274 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHHh-HHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCC
Q 003784 646 SLSKEALVDAEAKLEEL-DKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGE 724 (795)
Q Consensus 646 ~ls~~~~~~~~~~~~~~-~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~g~ 724 (795)
.|+.+-++++++.+..- ..-++...++++.+..+|...-++...+ .+.+.+.+.+.+..+||.....
T Consensus 498 Glp~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~------------~e~~~~~~~l~~~~~~l~~~~~ 565 (782)
T PRK00409 498 GLPENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALL------------KEAEKLKEELEEKKEKLQEEED 565 (782)
T ss_pred CcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777765332 2334444444444444444333333322 2334555566666666654321
Q ss_pred ---CCCHHHHHHHHHHHHHhhhHHHHHHHhh------hcchHHHHHHHHHHHHHHHH
Q 003784 725 ---DATAKEFQERLDVLKAIGDPVFFRFKEL------TARPASVEHAQKYLGQLQQI 772 (795)
Q Consensus 725 ---~a~~~~~~~k~~~L~~~~~~i~~r~~e~------~~rp~a~~~~~~~~~~~~~~ 772 (795)
....+++++.+++.+.-.+.++..+++. ....+......+.++.++..
T Consensus 566 ~~~~~~~~~a~~~l~~a~~~~~~~i~~lk~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 622 (782)
T PRK00409 566 KLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEK 622 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhhh
Confidence 1234566667777777777777777663 23455555566666665544
No 234
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.43 E-value=2.6e+02 Score=28.87 Aligned_cols=83 Identities=13% Similarity=0.185 Sum_probs=48.9
Q ss_pred EeeHHHHHHHHHH------HHHHHHHHHHHHHHHCCC--CCCCccEEEEecCccCCHH---HHHHHHHHhCCCccCCCCC
Q 003784 333 SITRQKFEELCED------LWERSLVPLREVLNYSGL--KMDEIYAVELIGGGTRVPK---LQAKLQEYLGRTELDRHLD 401 (795)
Q Consensus 333 ~itr~efe~l~~~------~~~~i~~~i~~~l~~a~~--~~~~i~~V~LvGG~sriP~---v~~~l~~~f~~~~i~~~~n 401 (795)
.=+|+||-+.+.. -++-+.-.+. ++-+++ .....+.|+|.|--+-+.. |++.|+...-.+- ..-
T Consensus 228 e~arEEli~~~~k~ekarlaldtlal~va--mEIagL~~~~~~~d~v~laGsvg~~~ep~dv~~ri~~~v~~k~---~~l 302 (332)
T COG4020 228 ESAREELIQRYGKGEKARLALDTLALLVA--MEIAGLLMVVYGCDGVVLAGSVGGDREPMDVLKRIKSKVFNKV---AVL 302 (332)
T ss_pred hhHHHHHHHHhcCChhhhHHHHHHHHHHH--HHHhhhhceecCCceEEEecccccccchhhHHHHHHHHHHHHH---hhc
Confidence 4457777655432 2222322222 333332 3567889999886666555 7777776654321 223
Q ss_pred cchhhHhhHHHHHHHhcCC
Q 003784 402 ADEAIVLGASLLAANLSDG 420 (795)
Q Consensus 402 ~deaVa~GAa~~aa~ls~~ 420 (795)
|-++.+.|+|+.|...+..
T Consensus 303 ~~esaaiG~a~IA~DI~~G 321 (332)
T COG4020 303 PPESAAIGLALIARDIASG 321 (332)
T ss_pred CchhhhhhhHHHHHHHHcC
Confidence 4467999999999887654
No 235
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=22.28 E-value=3.5e+02 Score=28.76 Aligned_cols=46 Identities=17% Similarity=0.191 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHCCCCCCCccEEEE-ecCccCCHHHHHHHHHHhCCC
Q 003784 349 RSLVPLREVLNYSGLKMDEIYAVEL-IGGGTRVPKLQAKLQEYLGRT 394 (795)
Q Consensus 349 ~i~~~i~~~l~~a~~~~~~i~~V~L-vGG~sriP~v~~~l~~~f~~~ 394 (795)
-+...|+++|+++++++.+||.++. +..++-.|.+-.+|.+.||-.
T Consensus 86 v~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~mr 132 (290)
T PF08392_consen 86 VIFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYGMR 132 (290)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhCCC
Confidence 3456778999999999999997654 567789999999999999864
No 236
>PLN02192 3-ketoacyl-CoA synthase
Probab=22.22 E-value=2.2e+02 Score=33.00 Aligned_cols=56 Identities=13% Similarity=0.057 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecC-ccCCHHHHHHHHHHhCCC
Q 003784 339 FEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGG-GTRVPKLQAKLQEYLGRT 394 (795)
Q Consensus 339 fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG-~sriP~v~~~l~~~f~~~ 394 (795)
+++..++...-+...++++|+++|+++++||.|+.... ....|.+-.+|.+.+|-.
T Consensus 169 ~~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lGlr 225 (511)
T PLN02192 169 MAEARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLR 225 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhCCC
Confidence 33444444445667778999999999999998876532 235799999999999864
No 237
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=22.15 E-value=58 Score=20.84 Aligned_cols=14 Identities=36% Similarity=0.740 Sum_probs=9.5
Q ss_pred CchhhHHHHHHHHH
Q 003784 1 MKRMLLKLLTFLSV 14 (795)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (795)
||++++.+++++++
T Consensus 7 mKkil~~l~a~~~L 20 (25)
T PF08139_consen 7 MKKILFPLLALFML 20 (25)
T ss_pred HHHHHHHHHHHHHH
Confidence 48888777775544
No 238
>PRK13321 pantothenate kinase; Reviewed
Probab=21.69 E-value=78 Score=32.99 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=15.3
Q ss_pred EEEEEcCccceEEEEE
Q 003784 26 VSSVDLGSEWLKVAVV 41 (795)
Q Consensus 26 vvGID~GTt~s~va~~ 41 (795)
+++||+|.|++++|++
T Consensus 2 iL~IDIGnT~ik~gl~ 17 (256)
T PRK13321 2 LLLIDVGNTNIKLGVF 17 (256)
T ss_pred EEEEEECCCeEEEEEE
Confidence 6899999999999999
No 239
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=21.09 E-value=1.2e+03 Score=26.33 Aligned_cols=84 Identities=17% Similarity=0.169 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhH----HHHHHHHHHHHHHhhhhhHHHHHHhhccCccccc------cCCCHHHHHHHHHHHHHHHHhh
Q 003784 650 EALVDAEAKLEELD----KKDADRRRTAELKNNLEGYIYATKEKFETSEDYE------KVSTSEERQSFVEKLDEAQEWL 719 (795)
Q Consensus 650 ~~~~~~~~~~~~~~----~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~------~~~~~~e~~~i~~~l~e~~~Wl 719 (795)
+.+.++++.+++|. .-|++.|+...--|.+++|+-.|+.+...+.... -..-++|.+.|....++...-+
T Consensus 281 ~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~ 360 (622)
T COG5185 281 DNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQL 360 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34444444444443 3467777778888999999999998876532100 0112455666666666666555
Q ss_pred hhcCCCCCHHHHHHHH
Q 003784 720 YTDGEDATAKEFQERL 735 (795)
Q Consensus 720 ~~~g~~a~~~~~~~k~ 735 (795)
... +-..++|+..-
T Consensus 361 ~kq--~Is~e~fe~mn 374 (622)
T COG5185 361 RKQ--GISTEQFELMN 374 (622)
T ss_pred Hhc--CCCHHHHHHHH
Confidence 543 45566665443
No 240
>PF09286 Pro-kuma_activ: Pro-kumamolisin, activation domain ; InterPro: IPR015366 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found at the N terminus of peptidases belonging to MEROPS peptidase family S53 (sedolisin, clan SB). The domain adopts a ferredoxin-like fold, with an alpha+beta sandwich. Cleavage of the domain results in activation of the peptidase []. ; GO: 0008236 serine-type peptidase activity; PDB: 1T1E_A 3EDY_A 3EE6_A.
Probab=20.98 E-value=1.8e+02 Score=27.14 Aligned_cols=46 Identities=26% Similarity=0.452 Sum_probs=31.9
Q ss_pred HhhhhhHHHHHHhhccCccccccCCCHHHHHHHH----HHHHHHHHhhhhcC
Q 003784 676 KNNLEGYIYATKEKFETSEDYEKVSTSEERQSFV----EKLDEAQEWLYTDG 723 (795)
Q Consensus 676 kN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~i~----~~l~e~~~Wl~~~g 723 (795)
.+.||.+++++-+=-. .. |.++.+.+|..++- +.++....||...|
T Consensus 26 ~~~L~~~l~~vsdP~s-~~-Ygk~Lt~~e~~~~~~p~~~~v~~V~~wL~~~G 75 (143)
T PF09286_consen 26 LDALEQYLAEVSDPGS-PN-YGKYLTPEEFAALFAPSPEDVAAVKSWLKSHG 75 (143)
T ss_dssp HHHHHHHHHHHHTTTS-TT-TT----HHHHHHHHS--HHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcCCCC-cc-cccCCCHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 4578888888876443 32 99999999988864 46888999999877
No 241
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=20.97 E-value=83 Score=36.06 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=20.3
Q ss_pred CCcEEEEEcCccceEEEEEEeeCC
Q 003784 23 QSAVSSVDLGSEWLKVAVVNLKPG 46 (795)
Q Consensus 23 ~~~vvGID~GTt~s~va~~~~~~g 46 (795)
+..+|||||||..-++++++..+|
T Consensus 2 ~~~~iGvDvGTgSaRA~v~D~~~G 25 (544)
T COG1069 2 MAYVIGVDVGTGSARAGVFDCQTG 25 (544)
T ss_pred ccEEEEEeecCCceeEEEEEcCCC
Confidence 356899999999999999976555
No 242
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=20.50 E-value=2e+02 Score=30.92 Aligned_cols=47 Identities=26% Similarity=0.151 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCCHHHHHHHHHHhCC
Q 003784 344 EDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGR 393 (795)
Q Consensus 344 ~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~ 393 (795)
...++.+...++++|+++++++++|+++++..++ +.+.+.+.+.+|-
T Consensus 221 ~~~~~~~~~~i~~~L~~~g~~~~did~~~~h~~~---~~~~~~~~~~lg~ 267 (325)
T PRK12879 221 KWAVRTMPKGARQVLEKAGLTKDDIDWVIPHQAN---LRIIESLCEKLGI 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCC---HHHHHHHHHHcCC
Confidence 3445667788999999999999999999998876 4445677777764
No 243
>PRK13318 pantothenate kinase; Reviewed
Probab=20.14 E-value=88 Score=32.61 Aligned_cols=16 Identities=13% Similarity=0.262 Sum_probs=15.3
Q ss_pred EEEEEcCccceEEEEE
Q 003784 26 VSSVDLGSEWLKVAVV 41 (795)
Q Consensus 26 vvGID~GTt~s~va~~ 41 (795)
+++||+|.|+++++++
T Consensus 2 iL~IDIGnT~iK~al~ 17 (258)
T PRK13318 2 LLAIDVGNTNTVFGLY 17 (258)
T ss_pred EEEEEECCCcEEEEEE
Confidence 6899999999999999
No 244
>PLN03168 chalcone synthase; Provisional
Probab=20.10 E-value=5.2e+02 Score=28.78 Aligned_cols=51 Identities=12% Similarity=0.141 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCc-cCCHHHHHHHHHHhCCC
Q 003784 344 EDLWERSLVPLREVLNYSGLKMDEIYAVELIGGG-TRVPKLQAKLQEYLGRT 394 (795)
Q Consensus 344 ~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~-sriP~v~~~l~~~f~~~ 394 (795)
+...+-..+..+++|+++|+.+++|+.|+.+-.+ -.+|.+--.|.+.+|-.
T Consensus 99 ~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~ 150 (389)
T PLN03168 99 VQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLGLK 150 (389)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhCcC
Confidence 4455556778899999999999999999876433 35899999999999864
Done!