Query 003788
Match_columns 795
No_of_seqs 164 out of 254
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 12:03:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003788.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003788hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00839 MPP_PAPs purple acid p 99.9 1.2E-24 2.7E-29 228.0 18.1 222 155-419 2-243 (294)
2 cd07378 MPP_ACP5 Homo sapiens 99.9 1E-24 2.2E-29 227.1 17.0 216 158-420 1-238 (277)
3 PLN02533 probable purple acid 99.9 6.7E-24 1.5E-28 237.1 19.7 216 147-416 129-361 (427)
4 PTZ00422 glideosome-associated 99.9 3.9E-24 8.4E-29 235.6 17.0 228 153-425 22-289 (394)
5 KOG1378 Purple acid phosphatas 99.9 5E-21 1.1E-25 212.3 18.3 216 154-421 144-388 (452)
6 KOG2679 Purple (tartrate-resis 99.8 3.8E-18 8.3E-23 178.2 11.9 224 153-425 39-285 (336)
7 cd07395 MPP_CSTP1 Homo sapiens 99.7 7.5E-17 1.6E-21 167.6 18.2 178 197-416 48-237 (262)
8 cd07402 MPP_GpdQ Enterobacter 99.7 1.5E-16 3.2E-21 162.0 16.5 167 197-415 39-212 (240)
9 cd07396 MPP_Nbla03831 Homo sap 99.7 4.4E-16 9.4E-21 163.4 17.9 169 198-415 40-246 (267)
10 PRK11148 cyclic 3',5'-adenosin 99.6 4.4E-15 9.5E-20 156.4 16.9 199 154-415 11-225 (275)
11 cd07401 MPP_TMEM62_N Homo sapi 99.6 1.2E-14 2.5E-19 152.4 15.0 129 262-400 78-220 (256)
12 cd07399 MPP_YvnB Bacillus subt 99.5 6.5E-14 1.4E-18 143.1 14.1 159 158-395 1-166 (214)
13 cd00842 MPP_ASMase acid sphing 99.5 7.8E-14 1.7E-18 147.7 12.6 167 197-392 67-263 (296)
14 PF00149 Metallophos: Calcineu 99.5 3.4E-14 7.4E-19 128.4 6.4 193 158-390 1-200 (200)
15 cd07393 MPP_DR1119 Deinococcus 99.4 3.2E-12 6.9E-17 132.1 16.0 120 260-396 72-211 (232)
16 COG1409 Icc Predicted phosphoh 99.3 2.5E-11 5.5E-16 125.1 15.8 178 159-390 2-193 (301)
17 cd08163 MPP_Cdc1 Saccharomyces 99.3 2.3E-11 5E-16 128.4 14.6 120 262-396 86-234 (257)
18 cd07383 MPP_Dcr2 Saccharomyces 99.3 2.8E-11 6.1E-16 121.5 12.0 77 318-394 88-180 (199)
19 PRK11340 phosphodiesterase Yae 99.2 2E-10 4.3E-15 121.6 16.5 196 155-424 47-261 (271)
20 cd07392 MPP_PAE1087 Pyrobaculu 99.2 1.2E-10 2.6E-15 113.4 13.5 143 197-391 22-174 (188)
21 cd07385 MPP_YkuE_C Bacillus su 99.2 4.6E-10 1E-14 113.3 15.0 197 157-424 1-214 (223)
22 TIGR03767 P_acnes_RR metalloph 99.1 7E-09 1.5E-13 117.7 20.3 126 298-426 291-430 (496)
23 TIGR03729 acc_ester putative p 99.0 1.5E-09 3.2E-14 112.4 11.7 64 323-391 148-222 (239)
24 cd07388 MPP_Tt1561 Thermus the 99.0 8.6E-09 1.9E-13 107.3 16.7 174 158-389 5-190 (224)
25 cd07400 MPP_YydB Bacillus subt 98.8 1.4E-08 3E-13 96.1 9.1 50 345-395 81-130 (144)
26 cd07404 MPP_MS158 Microscilla 98.8 2.6E-08 5.7E-13 97.0 9.8 52 342-393 97-152 (166)
27 cd00840 MPP_Mre11_N Mre11 nucl 98.7 2.9E-08 6.3E-13 99.5 8.7 122 262-393 78-204 (223)
28 cd00838 MPP_superfamily metall 98.7 8.4E-08 1.8E-12 85.9 9.5 50 345-395 70-120 (131)
29 TIGR03768 RPA4764 metallophosp 98.7 2.8E-07 6.1E-12 104.2 14.4 86 300-388 294-409 (492)
30 COG1408 Predicted phosphohydro 98.6 1.8E-07 3.8E-12 100.7 11.8 209 153-425 40-273 (284)
31 cd07379 MPP_239FB Homo sapiens 98.5 7.4E-07 1.6E-11 84.4 10.9 48 341-391 67-117 (135)
32 cd08166 MPP_Cdc1_like_1 unchar 98.1 8E-06 1.7E-10 83.8 8.5 42 345-396 112-153 (195)
33 cd07384 MPP_Cdc1_like Saccharo 98.1 8.5E-06 1.8E-10 81.4 8.0 35 345-397 119-153 (171)
34 PF09423 PhoD: PhoD-like phosp 98.0 4.2E-05 9.1E-10 86.7 12.0 92 297-390 252-377 (453)
35 cd07397 MPP_DevT Myxococcus xa 97.8 0.00034 7.4E-09 74.0 13.7 58 337-394 142-212 (238)
36 cd08165 MPP_MPPE1 human MPPE1 97.7 7.2E-05 1.6E-09 73.6 7.3 34 345-396 107-140 (156)
37 COG2129 Predicted phosphoester 97.7 0.0015 3.2E-08 68.6 15.8 177 157-394 3-191 (226)
38 cd07403 MPP_TTHA0053 Thermus t 97.6 0.00024 5.1E-09 67.7 9.0 49 343-394 57-107 (129)
39 cd08164 MPP_Ted1 Saccharomyces 97.6 0.00013 2.9E-09 74.9 6.9 32 345-394 129-160 (193)
40 PF12850 Metallophos_2: Calcin 97.5 0.00022 4.8E-09 67.5 7.3 60 341-415 80-139 (156)
41 PF14582 Metallophos_3: Metall 97.5 0.00043 9.3E-09 72.7 9.6 161 198-389 32-217 (255)
42 cd00845 MPP_UshA_N_like Escher 97.5 0.0036 7.9E-08 65.0 16.5 117 263-393 72-209 (252)
43 cd00841 MPP_YfcE Escherichia c 97.5 0.00057 1.2E-08 65.7 9.0 43 341-392 74-116 (155)
44 PRK05340 UDP-2,3-diacylglucosa 97.5 0.00058 1.3E-08 71.2 9.7 18 376-393 185-202 (241)
45 COG1768 Predicted phosphohydro 97.4 0.0023 4.9E-08 65.3 13.2 49 340-396 157-205 (230)
46 cd07406 MPP_CG11883_N Drosophi 97.4 0.0034 7.5E-08 66.4 15.0 133 263-418 73-228 (257)
47 TIGR01854 lipid_A_lpxH UDP-2,3 97.4 0.0024 5.2E-08 66.3 12.9 34 376-412 183-216 (231)
48 TIGR00040 yfcE phosphoesterase 97.2 0.0012 2.5E-08 64.3 8.2 14 376-389 104-117 (158)
49 cd00844 MPP_Dbr1_N Dbr1 RNA la 97.2 0.0066 1.4E-07 65.1 14.1 51 341-394 164-233 (262)
50 KOG1432 Predicted DNA repair e 97.1 0.0088 1.9E-07 66.2 14.7 194 153-389 49-310 (379)
51 cd07410 MPP_CpdB_N Escherichia 97.1 0.012 2.7E-07 62.5 15.2 123 264-392 86-232 (277)
52 KOG3770 Acid sphingomyelinase 97.1 0.0042 9.1E-08 72.5 12.3 129 261-393 251-408 (577)
53 cd07389 MPP_PhoD Bacillus subt 97.1 0.0027 5.8E-08 65.0 9.7 25 296-320 145-169 (228)
54 PHA02546 47 endonuclease subun 96.9 0.0044 9.6E-08 68.3 10.3 13 261-273 77-89 (340)
55 TIGR00619 sbcd exonuclease Sbc 96.9 0.0034 7.4E-08 66.5 8.9 16 262-277 77-92 (253)
56 cd07411 MPP_SoxB_N Thermus the 96.9 0.015 3.2E-07 61.7 13.5 112 265-390 87-219 (264)
57 TIGR00583 mre11 DNA repair pro 96.8 0.018 4E-07 65.4 14.6 41 342-391 201-241 (405)
58 cd07398 MPP_YbbF-LpxH Escheric 96.7 0.0026 5.6E-08 64.2 5.5 35 371-412 181-216 (217)
59 cd07408 MPP_SA0022_N Staphyloc 96.6 0.11 2.4E-06 54.9 17.0 123 260-393 70-216 (257)
60 PRK10966 exonuclease subunit S 96.5 0.0032 7E-08 71.3 5.4 23 262-284 76-98 (407)
61 COG2908 Uncharacterized protei 96.4 0.012 2.5E-07 62.5 8.4 30 376-412 185-214 (237)
62 cd07394 MPP_Vps29 Homo sapiens 96.3 0.019 4.1E-07 57.9 9.2 16 376-391 104-119 (178)
63 cd07409 MPP_CD73_N CD73 ecto-5 96.1 0.14 3E-06 55.1 15.2 117 260-391 82-219 (281)
64 cd07386 MPP_DNA_pol_II_small_a 96.1 0.068 1.5E-06 55.9 12.4 18 377-394 190-207 (243)
65 cd07382 MPP_DR1281 Deinococcus 95.5 0.52 1.1E-05 50.7 16.2 171 160-390 2-178 (255)
66 COG0420 SbcD DNA repair exonuc 95.3 0.011 2.3E-07 66.0 3.0 52 198-277 40-92 (390)
67 PRK09419 bifunctional 2',3'-cy 94.9 0.48 1E-05 60.6 16.0 189 155-391 658-883 (1163)
68 cd07407 MPP_YHR202W_N Saccharo 94.7 0.54 1.2E-05 51.1 13.6 84 299-390 137-231 (282)
69 cd07425 MPP_Shelphs Shewanella 94.6 0.017 3.8E-07 59.6 2.0 50 197-273 31-80 (208)
70 cd07390 MPP_AQ1575 Aquifex aeo 94.4 0.044 9.6E-07 54.3 4.2 37 340-394 105-141 (168)
71 cd07412 MPP_YhcR_N Bacillus su 93.9 2.1 4.5E-05 46.4 16.0 53 340-393 191-244 (288)
72 cd07405 MPP_UshA_N Escherichia 93.5 1.8 3.9E-05 46.8 14.8 51 340-392 173-223 (285)
73 cd07391 MPP_PF1019 Pyrococcus 93.3 0.072 1.5E-06 52.9 3.3 16 197-212 40-55 (172)
74 PRK09453 phosphodiesterase; Pr 93.1 0.13 2.8E-06 51.4 5.0 38 159-210 2-39 (182)
75 PRK04036 DNA polymerase II sma 92.8 0.11 2.4E-06 60.7 4.4 54 155-210 241-296 (504)
76 cd07380 MPP_CWF19_N Schizosacc 92.2 0.51 1.1E-05 46.9 7.7 49 342-393 69-126 (150)
77 COG0737 UshA 5'-nucleotidase/2 91.7 5.9 0.00013 46.3 16.9 119 265-390 107-247 (517)
78 PRK09558 ushA bifunctional UDP 91.5 4.7 0.0001 47.6 15.9 50 340-391 209-258 (551)
79 COG0622 Predicted phosphoester 90.8 1.3 2.8E-05 45.1 9.0 43 339-389 78-120 (172)
80 TIGR01530 nadN NAD pyrophospha 89.8 3.5 7.6E-05 48.8 12.8 112 263-391 84-219 (550)
81 KOG3662 Cell division control 89.8 0.55 1.2E-05 53.6 5.9 82 153-272 44-143 (410)
82 COG4186 Predicted phosphoester 89.2 1.3 2.9E-05 44.9 7.4 42 340-389 106-147 (186)
83 cd07424 MPP_PrpA_PrpB PrpA and 87.6 0.76 1.7E-05 47.0 4.8 42 160-214 3-44 (207)
84 PHA02239 putative protein phos 87.1 0.72 1.6E-05 48.9 4.4 45 159-215 2-46 (235)
85 cd08162 MPP_PhoA_N Synechococc 86.9 6.5 0.00014 43.4 11.8 38 341-391 208-245 (313)
86 COG3540 PhoD Phosphodiesterase 85.9 2.3 5E-05 49.5 7.8 44 157-214 139-184 (522)
87 cd00144 MPP_PPP_family phospho 84.0 1.4 3E-05 44.8 4.6 18 197-214 23-40 (225)
88 TIGR00024 SbcD_rel_arch putati 83.8 1.3 2.8E-05 46.7 4.4 17 197-213 57-73 (225)
89 cd07381 MPP_CapA CapA and rela 83.6 14 0.00031 38.5 12.0 131 260-395 77-224 (239)
90 smart00854 PGA_cap Bacterial c 83.0 25 0.00055 36.8 13.6 52 340-396 172-223 (239)
91 TIGR00282 metallophosphoestera 82.9 54 0.0012 35.9 16.2 49 329-389 132-180 (266)
92 TIGR01390 CycNucDiestase 2',3' 80.0 22 0.00048 43.1 13.3 46 341-391 196-241 (626)
93 COG1407 Predicted ICC-like pho 79.8 2.1 4.6E-05 45.8 4.2 80 159-273 21-110 (235)
94 PRK09419 bifunctional 2',3'-cy 78.7 26 0.00055 45.4 14.0 48 341-392 235-282 (1163)
95 COG1311 HYS2 Archaeal DNA poly 77.9 1.6 3.4E-05 50.8 2.7 57 196-273 260-321 (481)
96 PRK00166 apaH diadenosine tetr 76.6 3.3 7.2E-05 45.0 4.7 43 160-215 3-45 (275)
97 PRK09418 bifunctional 2',3'-cy 75.4 27 0.00058 43.6 12.4 47 341-392 245-291 (780)
98 PRK09968 serine/threonine-spec 75.2 3.2 6.9E-05 43.3 3.9 43 159-215 16-59 (218)
99 PRK09420 cpdB bifunctional 2', 74.1 31 0.00067 42.1 12.3 46 341-391 219-264 (649)
100 PRK11439 pphA serine/threonine 72.4 3.9 8.4E-05 42.5 3.7 43 159-215 18-61 (218)
101 cd07413 MPP_PA3087 Pseudomonas 71.3 4 8.7E-05 42.6 3.6 18 198-215 33-50 (222)
102 cd07422 MPP_ApaH Escherichia c 70.0 5.6 0.00012 42.9 4.4 19 197-215 25-43 (257)
103 PF10230 DUF2305: Uncharacteri 67.6 10 0.00023 40.6 5.9 21 261-285 3-23 (266)
104 PRK11907 bifunctional 2',3'-cy 63.1 61 0.0013 40.7 11.9 46 341-391 310-355 (814)
105 PF09587 PGA_cap: Bacterial ca 60.7 36 0.00078 35.9 8.3 134 259-397 74-235 (250)
106 PRK13625 bis(5'-nucleosyl)-tet 54.7 9.9 0.00022 40.3 2.9 51 159-215 2-53 (245)
107 cd07421 MPP_Rhilphs Rhilph pho 54.4 14 0.00031 41.1 4.0 25 198-222 34-58 (304)
108 cd07423 MPP_PrpE Bacillus subt 51.4 13 0.00027 39.0 3.0 18 198-215 37-54 (234)
109 KOG4419 5' nucleotidase [Nucle 46.1 69 0.0015 38.7 8.1 124 257-393 122-274 (602)
110 KOG2310 DNA repair exonuclease 45.7 2.5E+02 0.0055 34.0 12.4 51 155-218 11-73 (646)
111 cd07387 MPP_PolD2_C PolD2 (DNA 43.5 31 0.00067 37.5 4.5 55 160-214 2-58 (257)
112 TIGR00668 apaH bis(5'-nucleosy 40.4 21 0.00045 39.3 2.7 19 197-215 27-45 (279)
113 PF07717 OB_NTP_bind: Oligonuc 32.3 21 0.00045 32.9 0.9 31 27-57 81-111 (114)
114 COG3033 TnaA Tryptophanase [Am 28.7 41 0.00089 38.6 2.6 25 154-178 43-67 (471)
115 cd03231 ABC_CcmA_heme_exporter 27.3 1.2E+02 0.0026 30.8 5.5 41 311-352 146-186 (201)
116 PF07819 PGAP1: PGAP1-like pro 26.3 2.1E+02 0.0046 30.1 7.3 80 259-350 3-93 (225)
117 PRK00944 hypothetical protein; 24.9 2.5E+02 0.0053 29.6 7.1 50 513-578 126-175 (195)
118 KOG4489 Uncharacterized conser 24.7 39 0.00085 30.5 1.3 23 45-67 17-40 (87)
119 PF07069 PRRSV_2b: Porcine rep 24.3 5E+02 0.011 22.9 7.9 39 496-534 2-40 (73)
120 cd03232 ABC_PDR_domain2 The pl 24.3 1.5E+02 0.0032 29.9 5.5 41 311-352 129-169 (192)
121 cd07390 MPP_AQ1575 Aquifex aeo 24.1 74 0.0016 31.5 3.2 17 197-213 41-57 (168)
122 PF10755 DUF2585: Protein of u 24.0 2.5E+02 0.0054 28.9 6.8 19 466-484 41-59 (165)
123 COG2843 PgsA Putative enzyme o 23.5 2.4E+02 0.0051 32.6 7.4 68 338-418 221-289 (372)
124 TIGR02673 FtsE cell division A 23.4 1.3E+02 0.0028 30.5 5.0 41 311-352 158-198 (214)
125 PF13277 YmdB: YmdB-like prote 23.4 6E+02 0.013 27.9 10.1 107 266-389 61-175 (253)
126 PF00954 S_locus_glycop: S-loc 22.9 88 0.0019 29.0 3.3 45 687-733 27-71 (110)
127 TIGR01189 ccmA heme ABC export 22.9 1.6E+02 0.0035 29.6 5.5 41 311-352 148-188 (198)
128 smart00156 PP2Ac Protein phosp 22.5 1.5E+02 0.0032 32.3 5.4 18 370-387 202-220 (271)
129 PRK13543 cytochrome c biogenes 21.4 1.6E+02 0.0036 30.1 5.3 44 311-355 158-201 (214)
130 PF14008 Metallophos_C: Iron/z 20.9 56 0.0012 27.6 1.4 16 404-419 2-17 (62)
131 TIGR01166 cbiO cobalt transpor 20.7 1.8E+02 0.0038 29.1 5.2 41 311-352 148-188 (190)
No 1
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.92 E-value=1.2e-24 Score=227.95 Aligned_cols=222 Identities=18% Similarity=0.230 Sum_probs=147.2
Q ss_pred CCceEEEEEeecCC-CCCChhHHHHHhcCcccccccCCCCcccCCccEEEEcccccCCCCCh--hhhhhccccchhhhcC
Q 003788 155 KEDLWFDFMADTGD-GGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSA--FTYERRLFRPFEYALQ 231 (795)
Q Consensus 155 ~~~~wFd~VaDtGD-G~~stY~VA~llAq~~L~~~~~~~~~~lPrgdfLvlgGDlvYp~gs~--e~Y~~rf~~Pye~Al~ 231 (795)
+.++.|.++||+|. +.++..++..+.++ . .++||+|++||++|..+.. ++++ .|++.++...
T Consensus 2 ~~~~~f~v~gD~~~~~~~~~~~~~~l~~~-~------------~~~d~vl~~GDl~~~~~~~~~~~~~-~~~~~~~~~~- 66 (294)
T cd00839 2 DTPFKFAVFGDMGQNTNNSTNTLDHLEKE-L------------GNYDAILHVGDLAYADGYNNGSRWD-TFMRQIEPLA- 66 (294)
T ss_pred CCcEEEEEEEECCCCCCCcHHHHHHHHhc-c------------CCccEEEEcCchhhhcCCccchhHH-HHHHHHHHHH-
Confidence 57899999999997 45666666666554 1 3589999999999988764 3333 3333333211
Q ss_pred CCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChhHHH-HHhhcccc-CCccccCCCcceEEEECCCcE
Q 003788 232 PPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFM-RFICHKSW-LGGWFMPQKKSYFALQLPKGW 309 (795)
Q Consensus 232 ~~~~~~~~~i~~~~p~~p~~~~~l~~~~~P~ifAIPGNHDwyDGL~~F~-r~F~~~~~-~gGw~~pQ~~SYfAl~Lp~~w 309 (795)
...| ++++|||||......... +.+..+.. ...-.......||+++.++ +
T Consensus 67 --------------------------~~~P-~~~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~-v 118 (294)
T cd00839 67 --------------------------SYVP-YMVTPGNHEADYNFSFYKIKAFFPRFRFPHSPSGSTSNLWYSFDVGP-V 118 (294)
T ss_pred --------------------------hcCC-cEEcCcccccccCCCCcccccccccccccCCCCCCCCCceEEEeeCC-E
Confidence 1235 999999999875532211 11000000 0000111234699999996 8
Q ss_pred EEEEEecCCCC---CCCHHHHHHHHHHHHhhcC-CCCeEEEEecCCCCcccccccCC-cchhhHHHHHhhh-CCceeEEE
Q 003788 310 WVFGLDLALHC---DIDVYQFKFFAELVKEQVG-ERDSVIIMTHEPNWLLDWYFNNV-SGKNVKHLICDYL-KGRCKLRI 383 (795)
Q Consensus 310 wLlgLDsql~~---dID~~Q~~wf~~ll~~~v~-~~d~VIL~tHeP~w~~~~~~~~~-~~~~l~~lie~~l-~~rV~L~L 383 (795)
.|++||++... .+...|++|+++.|++.-. ..+++|+++|+|.|......... .....+..+++++ +++|+++|
T Consensus 119 ~fi~Lds~~~~~~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~ll~~~~v~~vl 198 (294)
T cd00839 119 HFVSLSTEVDFYGDGPGSPQYDWLEADLAKVDRSKTPWIIVMGHRPMYCSNTDHDDCIEGEKMRAALEDLFYKYGVDLVL 198 (294)
T ss_pred EEEEEecccccccCCCCcHHHHHHHHHHHHhcccCCCeEEEEeccCcEecCccccccchhHHHHHHHHHHHHHhCCCEEE
Confidence 99999998654 6778999999999874222 23689999999999876543321 1122334455555 67999999
Q ss_pred cCccCCCcceeecCCC---------CCcccceEEEecCCCccccc
Q 003788 384 AGDMHHYMRHSYVPSD---------GPVYVQHLLVNGCGGAFLHP 419 (795)
Q Consensus 384 AGHiHhY~R~~~~~~~---------G~~~~~~lIVsGGGGAfLhP 419 (795)
+||+|.|+|..|..+. ....++.+||+|+||+-+.+
T Consensus 199 ~GH~H~y~r~~p~~~~~~~~~~~~~~~~~g~~yiv~G~~G~~~~~ 243 (294)
T cd00839 199 SGHVHAYERTCPVYNGTVVGDCNPYSNPKGPVHIVIGAGGNDEGL 243 (294)
T ss_pred EccceeeEeechhhCCEeccccccccCCCccEEEEECCCccccCc
Confidence 9999999999875321 11246789999999997764
No 2
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.92 E-value=1e-24 Score=227.05 Aligned_cols=216 Identities=19% Similarity=0.225 Sum_probs=150.5
Q ss_pred eEEEEEeecCCC-CCChhHHHHHhcCcccccccCCCCcccCCccEEEEcccccCCCCChhhhhhccccchhhhcCCCCCC
Q 003788 158 LWFDFMADTGDG-GNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWY 236 (795)
Q Consensus 158 ~wFd~VaDtGDG-~~stY~VA~llAq~~L~~~~~~~~~~lPrgdfLvlgGDlvYp~gs~e~Y~~rf~~Pye~Al~~~~~~ 236 (795)
+.|.++||+|.+ .+.+.++++.|++... ..++||+|++||++|+.+...++..++.+.|+..+..
T Consensus 1 ~~f~~~gD~g~~~~~~~~~~~~~~~~~~~----------~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~---- 66 (277)
T cd07378 1 LRFLALGDWGGGGTAGQKAVAKAMAKVAA----------ELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSA---- 66 (277)
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHHHHH----------hcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccc----
Confidence 479999999987 6788889988877541 1468999999999999987655555555556654321
Q ss_pred cccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChhHHHHHhhccccCCccccCCCcceEEEECCC-----cEEE
Q 003788 237 KKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQLPK-----GWWV 311 (795)
Q Consensus 237 ~~~~i~~~~p~~p~~~~~l~~~~~P~ifAIPGNHDwyDGL~~F~r~F~~~~~~gGw~~pQ~~SYfAl~Lp~-----~wwL 311 (795)
++ .+.| +++||||||+.++......+... .....|.+| ..||++..+. +++|
T Consensus 67 ------------------~~-~~~P-~~~v~GNHD~~~~~~~~~~~~~~-~~~~~~~~~--~~~y~~~~~~~~~~~~~~~ 123 (277)
T cd07378 67 ------------------PS-LQVP-WYLVLGNHDYSGNVSAQIDYTKR-PNSPRWTMP--AYYYRVSFPFPSSDTTVEF 123 (277)
T ss_pred ------------------hh-hcCC-eEEecCCcccCCCchheeehhcc-CCCCCccCc--chheEEEeecCCCCCEEEE
Confidence 11 2456 99999999998765443222211 012334454 4588999873 6999
Q ss_pred EEEecCCC---------------CCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCcccccccCCcchhhHHHHHhhh-
Q 003788 312 FGLDLALH---------------CDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYL- 375 (795)
Q Consensus 312 lgLDsql~---------------~dID~~Q~~wf~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l- 375 (795)
++|||+.. +.+...|++||++.|++ . +.+++||++|||.+........ ......+++++
T Consensus 124 i~LDt~~~~~~~~~~~~~~~~~~~~~~~~Q~~wL~~~L~~-~-~~~~~iv~~H~P~~~~~~~~~~---~~~~~~l~~l~~ 198 (277)
T cd07378 124 IMIDTVPLCGNSDDIASPYGPPNGKLAEEQLAWLEKTLAA-S-TADWKIVVGHHPIYSSGEHGPT---SCLVDRLLPLLK 198 (277)
T ss_pred EEEeChhHcCccccccccccCcchhhHHHHHHHHHHHHHh-c-CCCeEEEEeCccceeCCCCCCc---HHHHHHHHHHHH
Confidence 99999853 23567899999999974 2 3489999999999987543221 11223344444
Q ss_pred CCceeEEEcCccCCCcceeecCCCCCcccceEEEecCCCcccccc
Q 003788 376 KGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGAFLHPT 420 (795)
Q Consensus 376 ~~rV~L~LAGHiHhY~R~~~~~~~G~~~~~~lIVsGGGGAfLhPT 420 (795)
+++|+++|+||+|.|+++.... .+.++||+|+||+.....
T Consensus 199 ~~~v~~vl~GH~H~~~~~~~~~-----~~~~~i~~G~~~~~~~~~ 238 (277)
T cd07378 199 KYKVDAYLSGHDHNLQHIKDDG-----SGTSFVVSGAGSKARPSV 238 (277)
T ss_pred HcCCCEEEeCCcccceeeecCC-----CCcEEEEeCCCcccCCCC
Confidence 5689999999999999987653 234789999988754433
No 3
>PLN02533 probable purple acid phosphatase
Probab=99.91 E-value=6.7e-24 Score=237.09 Aligned_cols=216 Identities=20% Similarity=0.293 Sum_probs=147.9
Q ss_pred ccccccCCCCceEEEEEeecCCCCCChhHHHHHhcCcccccccCCCCcccCCccEEEEcccccCCCCChhhhh--hcccc
Q 003788 147 LLYDHLSEKEDLWFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYE--RRLFR 224 (795)
Q Consensus 147 ~~~~~~~~~~~~wFd~VaDtGDG~~stY~VA~llAq~~L~~~~~~~~~~lPrgdfLvlgGDlvYp~gs~e~Y~--~rf~~ 224 (795)
+.|.-...+.++.|.++||+|.+.....+++.+.+ .++||+|++||++|.+.....+. .++++
T Consensus 129 ~~F~T~p~~~~~~f~v~GDlG~~~~~~~tl~~i~~---------------~~pD~vl~~GDl~y~~~~~~~wd~f~~~i~ 193 (427)
T PLN02533 129 FSFRTPPSKFPIKFAVSGDLGTSEWTKSTLEHVSK---------------WDYDVFILPGDLSYANFYQPLWDTFGRLVQ 193 (427)
T ss_pred eEEECCCCCCCeEEEEEEeCCCCcccHHHHHHHHh---------------cCCCEEEEcCccccccchHHHHHHHHHHhh
Confidence 33433344578999999999977655545554321 24799999999999754322111 12222
Q ss_pred chhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCCh----hHHHHHhhccccCCccccCCC---
Q 003788 225 PFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGL----NTFMRFICHKSWLGGWFMPQK--- 297 (795)
Q Consensus 225 Pye~Al~~~~~~~~~~i~~~~p~~p~~~~~l~~~~~P~ifAIPGNHDwyDGL----~~F~r~F~~~~~~gGw~~pQ~--- 297 (795)
|+.. ..| ++++|||||..... ..|. .+...|.||..
T Consensus 194 ~l~s------------------------------~~P-~m~~~GNHE~~~~~~~~~~~f~------~y~~rf~mP~~~~g 236 (427)
T PLN02533 194 PLAS------------------------------QRP-WMVTHGNHELEKIPILHPEKFT------AYNARWRMPFEESG 236 (427)
T ss_pred hHhh------------------------------cCc-eEEeCccccccccccccCcCcc------chhhcccCCccccC
Confidence 2221 235 99999999985321 1111 12234677753
Q ss_pred ---cceEEEECCCcEEEEEEecCCCCCCCHHHHHHHHHHHHhhcC--CCCeEEEEecCCCCcccccccCCc-chhhHHHH
Q 003788 298 ---KSYFALQLPKGWWVFGLDLALHCDIDVYQFKFFAELVKEQVG--ERDSVIIMTHEPNWLLDWYFNNVS-GKNVKHLI 371 (795)
Q Consensus 298 ---~SYfAl~Lp~~wwLlgLDsql~~dID~~Q~~wf~~ll~~~v~--~~d~VIL~tHeP~w~~~~~~~~~~-~~~l~~li 371 (795)
..||+++.+. +++++||+......+.+|++||++.|++ .+ ..+|+|++.|+|.|..+..+..+. ...++..+
T Consensus 237 ~~~~~yYSfd~g~-vhfI~Lds~~~~~~~~~Q~~WLe~dL~~-~~r~~~pwiIv~~H~P~y~s~~~~~~~~~~~~~r~~l 314 (427)
T PLN02533 237 STSNLYYSFNVYG-VHIIMLGSYTDFEPGSEQYQWLENNLKK-IDRKTTPWVVAVVHAPWYNSNEAHQGEKESVGMKESM 314 (427)
T ss_pred CCCCceEEEEECC-EEEEEEeCCccccCchHHHHHHHHHHHh-hcccCCCEEEEEeCCCeeecccccCCcchhHHHHHHH
Confidence 2599999987 8999999988777789999999999974 33 347899999999998764432211 12244556
Q ss_pred Hhhh-CCceeEEEcCccCCCcceeecCCCC-CcccceEEEecCCCcc
Q 003788 372 CDYL-KGRCKLRIAGDMHHYMRHSYVPSDG-PVYVQHLLVNGCGGAF 416 (795)
Q Consensus 372 e~~l-~~rV~L~LAGHiHhY~R~~~~~~~G-~~~~~~lIVsGGGGAf 416 (795)
++++ +++|+|+|+||+|.|+|..|....- ..+++.+||+|+||.-
T Consensus 315 e~Ll~~~~VdlvlsGH~H~YeR~~p~~~~~~~~~gpvyiv~G~gG~~ 361 (427)
T PLN02533 315 ETLLYKARVDLVFAGHVHAYERFDRVYQGKTDKCGPVYITIGDGGNR 361 (427)
T ss_pred HHHHHHhCCcEEEecceecccccccccCCccCCCCCEEEEeCCCccc
Confidence 6666 7799999999999999998875421 1346799999999974
No 4
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=99.91 E-value=3.9e-24 Score=235.58 Aligned_cols=228 Identities=16% Similarity=0.136 Sum_probs=162.8
Q ss_pred CCCCceEEEEEeecCCCCCChhHHHHHhcCcccccccCCCCcccCCccEEEEcccccCCCCChhhhhhccccchhhhcCC
Q 003788 153 SEKEDLWFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQP 232 (795)
Q Consensus 153 ~~~~~~wFd~VaDtGDG~~stY~VA~llAq~~L~~~~~~~~~~lPrgdfLvlgGDlvYp~gs~e~Y~~rf~~Pye~Al~~ 232 (795)
..+..+.|.++||.|.|...|+.||+.|++-..+ .++||++.+||+. ++|-......+|.+-||..+..
T Consensus 22 ~~~~~l~F~~vGDwG~g~~~Q~~VA~~M~~~~~~----------~~~~FVls~GDNF-~~Gv~sv~Dp~f~~~FE~vY~~ 90 (394)
T PTZ00422 22 SVKAQLRFASLGNWGTGSKQQKLVASYLKQYAKN----------ERVTFLVSPGSNF-PGGVDGLNDPKWKHCFENVYSE 90 (394)
T ss_pred ccCCeEEEEEEecCCCCchhHHHHHHHHHHHHHh----------CCCCEEEECCccc-cCCCCCccchhHHhhHhhhccC
Confidence 4568899999999999999999999999976422 3689999999997 6776555666666666665432
Q ss_pred CCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChhHHHHHhhcc----------------ccCCccccCC
Q 003788 233 PPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICHK----------------SWLGGWFMPQ 296 (795)
Q Consensus 233 ~~~~~~~~i~~~~p~~p~~~~~l~~~~~P~ifAIPGNHDwyDGL~~F~r~F~~~----------------~~~gGw~~pQ 296 (795)
+ . ..+..| +|+|+|||||..+.++++...-+. ..-.+|.||.
T Consensus 91 ~-------------s--------~~L~~P-wy~vLGNHDy~Gn~~AQi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP~ 148 (394)
T PTZ00422 91 E-------------S--------GDMQIP-FFTVLGQADWDGNYNAELLKGQNVYLNGHGQTDIEYDSNNDIYPKWIMPN 148 (394)
T ss_pred c-------------c--------hhhCCC-eEEeCCcccccCCchhhhccccccccccccccccccccccccCCCccCCc
Confidence 1 1 012346 999999999988888887421110 1135799995
Q ss_pred CcceEEEE----C------------CCcEEEEEEecCCCC------CCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCc
Q 003788 297 KKSYFALQ----L------------PKGWWVFGLDLALHC------DIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWL 354 (795)
Q Consensus 297 ~~SYfAl~----L------------p~~wwLlgLDsql~~------dID~~Q~~wf~~ll~~~v~~~d~VIL~tHeP~w~ 354 (795)
+ ||.+. . ....-++.+||.... +....|.+|+++.++.+....+|+||+.|||.|+
T Consensus 149 ~--yY~~~~~f~~~~~~~~~~~~~~~~~v~fifiDT~~l~~~~~~~~~~~~~w~~L~~~L~~a~k~a~WkIVvGHhPIyS 226 (394)
T PTZ00422 149 Y--WYHYFTHFTDTSGPSLLKSGHKDMSVAFIFIDTWILSSSFPYKKVSERAWQDLKATLEYAPKIADYIIVVGDKPIYS 226 (394)
T ss_pred h--hheeeeeeecccccccccccCCCCEEEEEEEECchhcccCCccccCHHHHHHHHHHHHhhccCCCeEEEEecCceee
Confidence 5 77642 1 112678999997422 2346789999998864344468999999999999
Q ss_pred ccccccCCcchhhHHHHHhhh-CCceeEEEcCccCCCcceeecCCCCCcccceEEEecCCCcccc-cccccCc
Q 003788 355 LDWYFNNVSGKNVKHLICDYL-KGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGAFLH-PTHVFSN 425 (795)
Q Consensus 355 ~~~~~~~~~~~~l~~lie~~l-~~rV~L~LAGHiHhY~R~~~~~~~G~~~~~~lIVsGGGGAfLh-PTH~~~~ 425 (795)
.+.++++ ..+...++++| +++|+++||||.|+|||.... +.++|||||||+... +.+..+.
T Consensus 227 sG~hg~~---~~L~~~L~PLL~ky~VdlYisGHDH~lq~i~~~-------gt~yIvSGaGs~~~~~~~~~~~~ 289 (394)
T PTZ00422 227 SGSSKGD---SYLSYYLLPLLKDAQVDLYISGYDRNMEVLTDE-------GTAHINCGSGGNSGRKSIMKNSK 289 (394)
T ss_pred cCCCCCC---HHHHHHHHHHHHHcCcCEEEEccccceEEecCC-------CceEEEeCccccccCCCCCCCCC
Confidence 9875432 22555667777 679999999999999997532 247999999997443 4444333
No 5
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=99.86 E-value=5e-21 Score=212.27 Aligned_cols=216 Identities=17% Similarity=0.234 Sum_probs=159.2
Q ss_pred CCCceEEEEEeecCCCCCChhHHHHHhcCcccccccCCCCcccCCccEEEEcccccCCCCChh-hh--hhccccchhhhc
Q 003788 154 EKEDLWFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAF-TY--ERRLFRPFEYAL 230 (795)
Q Consensus 154 ~~~~~wFd~VaDtGDG~~stY~VA~llAq~~L~~~~~~~~~~lPrgdfLvlgGDlvYp~gs~e-~Y--~~rf~~Pye~Al 230 (795)
++.+..|.+.||+|....++-+...+++.+ .+|+++|.||++|..+... .. -.|+++|....
T Consensus 144 ~~~~~~~~i~GDlG~~~~~~s~~~~~~~~~--------------k~d~vlhiGDlsYa~~~~n~~wD~f~r~vEp~As~- 208 (452)
T KOG1378|consen 144 QDSPTRAAIFGDMGCTEPYTSTLRNQEENL--------------KPDAVLHIGDLSYAMGYSNWQWDEFGRQVEPIASY- 208 (452)
T ss_pred ccCceeEEEEccccccccccchHhHHhccc--------------CCcEEEEecchhhcCCCCccchHHHHhhhhhhhcc-
Confidence 458899999999999988877777766543 4799999999999986542 22 25677777752
Q ss_pred CCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChhHHHHHhhccccCCccccCCCcc------eEEEE
Q 003788 231 QPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKS------YFALQ 304 (795)
Q Consensus 231 ~~~~~~~~~~i~~~~p~~p~~~~~l~~~~~P~ifAIPGNHDwyDGL~~F~r~F~~~~~~gGw~~pQ~~S------YfAl~ 304 (795)
.| .+++.||||.---... |=......|.||-+.| ||+++
T Consensus 209 -----------------------------vP-ymv~~GNHE~d~~~~~-----~F~~y~~Rf~mP~~~s~s~~~l~YSfd 253 (452)
T KOG1378|consen 209 -----------------------------VP-YMVCSGNHEIDWPPQP-----CFVPYSARFNMPGNSSESDSNLYYSFD 253 (452)
T ss_pred -----------------------------Cc-eEEecccccccCCCcc-----cccccceeeccCCCcCCCCCceeEEEe
Confidence 35 9999999986321111 2223344578886554 99999
Q ss_pred CCCcEEEEEEecCCCCC--CCHHHHHHHHHHHHhhcCC--CCeEEEEecCCCCcccc--cccCCcchhhHHHHHhhh-CC
Q 003788 305 LPKGWWVFGLDLALHCD--IDVYQFKFFAELVKEQVGE--RDSVIIMTHEPNWLLDW--YFNNVSGKNVKHLICDYL-KG 377 (795)
Q Consensus 305 Lp~~wwLlgLDsql~~d--ID~~Q~~wf~~ll~~~v~~--~d~VIL~tHeP~w~~~~--~~~~~~~~~l~~lie~~l-~~ 377 (795)
++. .++++|++..... .-.+|++||++.|+ +++. .+|+|++.|.|.|.++. +-..-.....+.-+|+++ ++
T Consensus 254 ~G~-vhfv~lsse~~~~~~~~~~QY~WL~~dL~-~v~r~~tPWlIv~~HrP~Y~S~~~~~~reG~~~~~~~~LE~l~~~~ 331 (452)
T KOG1378|consen 254 VGG-VHFVVLSTETYYNFLKGTAQYQWLERDLA-SVDRKKTPWLIVQGHRPMYCSSNDAHYREGEFESMREGLEPLFVKY 331 (452)
T ss_pred ecc-EEEEEEeccccccccccchHHHHHHHHHH-HhcccCCCeEEEEecccceecCCchhhccCcchhhHHHHHHHHHHh
Confidence 997 7999999987643 34689999999996 4665 69999999999999986 322111123445567777 89
Q ss_pred ceeEEEcCccCCCcceeecCCC------C-----CcccceEEEecCCCc--cccccc
Q 003788 378 RCKLRIAGDMHHYMRHSYVPSD------G-----PVYVQHLLVNGCGGA--FLHPTH 421 (795)
Q Consensus 378 rV~L~LAGHiHhY~R~~~~~~~------G-----~~~~~~lIVsGGGGA--fLhPTH 421 (795)
+|+++|+||.|.|+|..|.... + ...+|.+||+|+||+ -+.+-.
T Consensus 332 ~VDvvf~GHvH~YER~~piyn~~~~~~~~~~~~~d~~aPvyI~~G~~G~~e~~~~~~ 388 (452)
T KOG1378|consen 332 KVDVVFWGHVHRYERFCPIYNNTCGTGWGPVHLVDGMAPIYITVGDGGNHEHLDPFS 388 (452)
T ss_pred ceeEEEeccceehhccchhhcceeeccCCcccccCCCCCEEEEEccCCcccccCccc
Confidence 9999999999999999887441 2 245789999999995 454444
No 6
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=3.8e-18 Score=178.24 Aligned_cols=224 Identities=19% Similarity=0.201 Sum_probs=153.4
Q ss_pred CCCCceEEEEEeecC-CCCCChhHHHHHhcCcccccccCCCCcccCCccEEEEcccccCCCCChhhhhhccccchhhhcC
Q 003788 153 SEKEDLWFDFMADTG-DGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQ 231 (795)
Q Consensus 153 ~~~~~~wFd~VaDtG-DG~~stY~VA~llAq~~L~~~~~~~~~~lPrgdfLvlgGDlvYp~gs~e~Y~~rf~~Pye~Al~ 231 (795)
.+++.+.|.+|||+| .|.-.|.+||..|+.-..+ -..||||-+||+.|-+|-...+..||..-|+..+.
T Consensus 39 ~~dgslsflvvGDwGr~g~~nqs~va~qmg~ige~----------l~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT 108 (336)
T KOG2679|consen 39 KSDGSLSFLVVGDWGRRGSFNQSQVALQMGEIGEK----------LDIDFVLSTGDNFYDTGLTSENDPRFQDSFENIYT 108 (336)
T ss_pred CCCCceEEEEEcccccCCchhHHHHHHHHHhHHHh----------ccceEEEecCCcccccCCCCCCChhHHhhhhhccc
Confidence 457899999999999 5667777888888754322 34799999999999999999999999999998764
Q ss_pred CCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChhHHHHHhhccccCCccccCCCcceEEEECCCcEEE
Q 003788 232 PPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWV 311 (795)
Q Consensus 232 ~~~~~~~~~i~~~~p~~p~~~~~l~~~~~P~ifAIPGNHDwyDGL~~F~r~F~~~~~~gGw~~pQ~~SYfAl~Lp~~wwL 311 (795)
. |.| ..| +|.|.||||+..+.++++.-...+. -..|.- ++|||..- .. .=+
T Consensus 109 ~-------------pSL----------Qkp-Wy~vlGNHDyrGnV~AQls~~l~~~-d~RW~c--~rsf~~~a-e~-ve~ 159 (336)
T KOG2679|consen 109 A-------------PSL----------QKP-WYSVLGNHDYRGNVEAQLSPVLRKI-DKRWIC--PRSFYVDA-EI-VEM 159 (336)
T ss_pred C-------------ccc----------ccc-hhhhccCccccCchhhhhhHHHHhh-ccceec--ccHHhhcc-ee-eee
Confidence 3 233 346 9999999999999888877332211 111322 24453322 00 112
Q ss_pred EEEecCCC---------CC------------CCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCcccccccCCcchhhHHH
Q 003788 312 FGLDLALH---------CD------------IDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHL 370 (795)
Q Consensus 312 lgLDsql~---------~d------------ID~~Q~~wf~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~l 370 (795)
++.|+..- .+ +-+.|+.||+..+++ ...+|+||+.|||.|+.+.|.. + .-++..
T Consensus 160 f~v~~~~f~~d~~~~~~~~~ydw~~v~PR~~~~~~~l~~le~~L~~--S~a~wkiVvGHh~i~S~~~HG~--T-~eL~~~ 234 (336)
T KOG2679|consen 160 FFVDTTPFMDDTFTLCTDDVYDWRGVLPRVKYLRALLSWLEVALKA--SRAKWKIVVGHHPIKSAGHHGP--T-KELEKQ 234 (336)
T ss_pred eccccccchhhheecccccccccccCChHHHHHHHHHHHHHHHHHH--hhcceEEEecccceehhhccCC--h-HHHHHH
Confidence 33333211 11 113577888888865 4569999999999999986543 1 223344
Q ss_pred HHhhh-CCceeEEEcCccCCCcceeecCCCCCcccceEEEecCCCcccccccccCc
Q 003788 371 ICDYL-KGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGAFLHPTHVFSN 425 (795)
Q Consensus 371 ie~~l-~~rV~L~LAGHiHhY~R~~~~~~~G~~~~~~lIVsGGGGAfLhPTH~~~~ 425 (795)
+.++| ..+|+++++||.|..|..+-.. ++.+++|||||---=..|+..++
T Consensus 235 LlPiL~~n~VdlY~nGHDHcLQhis~~e-----~~iqf~tSGagSkaw~g~~~~~~ 285 (336)
T KOG2679|consen 235 LLPILEANGVDLYINGHDHCLQHISSPE-----SGIQFVTSGAGSKAWRGTDHNPE 285 (336)
T ss_pred HHHHHHhcCCcEEEecchhhhhhccCCC-----CCeeEEeeCCcccccCCCccCCc
Confidence 44555 5699999999999888876332 35589999987665566666654
No 7
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.73 E-value=7.5e-17 Score=167.58 Aligned_cols=178 Identities=21% Similarity=0.245 Sum_probs=110.1
Q ss_pred CCccEEEEcccccCCCCChhhhhhccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCCh
Q 003788 197 PRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGL 276 (795)
Q Consensus 197 PrgdfLvlgGDlvYp~gs~e~Y~~rf~~Pye~Al~~~~~~~~~~i~~~~p~~p~~~~~l~~~~~P~ifAIPGNHDwyDGL 276 (795)
+.+|+|+++||++...... ++..+..+.+...++. + ....| ++.||||||..+..
T Consensus 48 ~~pd~ii~~GDl~~~~~~~-~~~~~~~~~~~~~~~~----------------------~-~~~vp-~~~i~GNHD~~~~~ 102 (262)
T cd07395 48 PKPKFVVVCGDLVNAMPGD-ELRERQVSDLKDVLSL----------------------L-DPDIP-LVCVCGNHDVGNTP 102 (262)
T ss_pred CCCCEEEEeCCcCCCCcch-hhHHHHHHHHHHHHhh----------------------c-cCCCc-EEEeCCCCCCCCCC
Confidence 5789999999999876543 3322222344443321 0 01234 99999999985331
Q ss_pred -hHHHHHhhccccCCccccCCCcceEEEECCCcEEEEEEecCCCC------CCCHHHHHHHHHHHHhhc-CCCCeEEEEe
Q 003788 277 -NTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLALHC------DIDVYQFKFFAELVKEQV-GERDSVIIMT 348 (795)
Q Consensus 277 -~~F~r~F~~~~~~gGw~~pQ~~SYfAl~Lp~~wwLlgLDsql~~------dID~~Q~~wf~~ll~~~v-~~~d~VIL~t 348 (795)
...++.|.+ . ....||++..++ +++++||++... .+...|++||++.+++.- ..+.++||++
T Consensus 103 ~~~~~~~f~~-~--------~g~~~y~~~~~~-~~~i~lds~~~~~~~~~~~~~~~ql~WL~~~L~~~~~~~~~~~iv~~ 172 (262)
T cd07395 103 TEESIKDYRD-V--------FGDDYFSFWVGG-VFFIVLNSQLFFDPSEVPELAQAQDVWLEEQLEIAKESDCKHVIVFQ 172 (262)
T ss_pred ChhHHHHHHH-H--------hCCcceEEEECC-EEEEEeccccccCccccccchHHHHHHHHHHHHHHHhccCCcEEEEE
Confidence 111122211 0 112478888865 899999997532 356789999999997422 2457999999
Q ss_pred cCCCCcccccccCC---cchhhHHHHHhhh-CCceeEEEcCccCCCcceeecCCCCCcccceEEEecCCCcc
Q 003788 349 HEPNWLLDWYFNNV---SGKNVKHLICDYL-KGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGAF 416 (795)
Q Consensus 349 HeP~w~~~~~~~~~---~~~~l~~lie~~l-~~rV~L~LAGHiHhY~R~~~~~~~G~~~~~~lIVsGGGGAf 416 (795)
|+|.+.......+. .....+..+.+++ +++|+++|+||+|.+.+.... +.+++++|+.|..
T Consensus 173 H~P~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~v~~GH~H~~~~~~~~-------g~~~~~~~~~~~~ 237 (262)
T cd07395 173 HIPWFLEDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSGHYHRNAGGRYG-------GLEMVVTSAIGAQ 237 (262)
T ss_pred CcCCccCCCCCCcccCCcCHHHHHHHHHHHHhcCceEEEECccccCCceEEC-------CEEEEEcCceecc
Confidence 99998654321111 0111223334444 568999999999988765421 2367888887763
No 8
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.71 E-value=1.5e-16 Score=161.98 Aligned_cols=167 Identities=21% Similarity=0.337 Sum_probs=108.5
Q ss_pred CCccEEEEcccccCCCCChhhhhhccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCCh
Q 003788 197 PRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGL 276 (795)
Q Consensus 197 PrgdfLvlgGDlvYp~gs~e~Y~~rf~~Pye~Al~~~~~~~~~~i~~~~p~~p~~~~~l~~~~~P~ifAIPGNHDwyDGL 276 (795)
+++|+||++||++.. ++.++|+. + ...+ +..+.| ++.||||||..+
T Consensus 39 ~~~d~vi~~GDl~~~-~~~~~~~~-~----~~~l-------------------------~~~~~p-~~~v~GNHD~~~-- 84 (240)
T cd07402 39 PRPDLVLVTGDLTDD-GSPESYER-L----RELL-------------------------AALPIP-VYLLPGNHDDRA-- 84 (240)
T ss_pred CCCCEEEECccCCCC-CCHHHHHH-H----HHHH-------------------------hhcCCC-EEEeCCCCCCHH--
Confidence 578999999999985 44444432 2 2222 122345 999999999854
Q ss_pred hHHHHHhhccccCCccccCCCcceEEEECCCcEEEEEEecCCC----CCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCC
Q 003788 277 NTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLALH----CDIDVYQFKFFAELVKEQVGERDSVIIMTHEPN 352 (795)
Q Consensus 277 ~~F~r~F~~~~~~gGw~~pQ~~SYfAl~Lp~~wwLlgLDsql~----~dID~~Q~~wf~~ll~~~v~~~d~VIL~tHeP~ 352 (795)
.+.++|..... .....+|+++.+. +.+++||+... +.++..|++|+++.+++ . ++.++|+++|+|+
T Consensus 85 -~~~~~~~~~~~------~~~~~~~~~~~~~-~~~i~lds~~~~~~~~~~~~~ql~wL~~~L~~-~-~~~~~il~~H~pp 154 (240)
T cd07402 85 -AMRAVFPELPP------APGFVQYVVDLGG-WRLILLDSSVPGQHGGELCAAQLDWLEAALAE-A-PDKPTLVFLHHPP 154 (240)
T ss_pred -HHHHhhccccc------cccccceeEecCC-EEEEEEeCCCCCCcCCEECHHHHHHHHHHHHh-C-CCCCEEEEECCCC
Confidence 34444432111 1223467888885 89999998753 44678999999999974 2 3689999999999
Q ss_pred Ccccccc-cCCcchhhHHHHHhhh-CC-ceeEEEcCccCCCcceeecCCCCCcccceEEEecCCCc
Q 003788 353 WLLDWYF-NNVSGKNVKHLICDYL-KG-RCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGA 415 (795)
Q Consensus 353 w~~~~~~-~~~~~~~l~~lie~~l-~~-rV~L~LAGHiHhY~R~~~~~~~G~~~~~~lIVsGGGGA 415 (795)
+...... +.....+ ...+.+++ ++ +++++|+||+|.+...... +.++|++|+.|.
T Consensus 155 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~~v~~v~~GH~H~~~~~~~~-------g~~~~~~gs~~~ 212 (240)
T cd07402 155 FPVGIAWMDAIGLRN-AEALAAVLARHPNVRAILCGHVHRPIDGSWG-------GIPLLTAPSTCH 212 (240)
T ss_pred ccCCchhhhhhhCCC-HHHHHHHHhcCCCeeEEEECCcCchHHeEEC-------CEEEEEcCccee
Confidence 7753211 1101111 22334444 45 8999999999987666531 236788888665
No 9
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.70 E-value=4.4e-16 Score=163.45 Aligned_cols=169 Identities=18% Similarity=0.147 Sum_probs=105.4
Q ss_pred CccEEEEcccccCCCCCh--hhhhhccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCC
Q 003788 198 RGDVLLIGGDLAYPNPSA--FTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDG 275 (795)
Q Consensus 198 rgdfLvlgGDlvYp~gs~--e~Y~~rf~~Pye~Al~~~~~~~~~~i~~~~p~~p~~~~~l~~~~~P~ifAIPGNHDwyDG 275 (795)
++|+||++||++..+... +.|+ .+...+ +..+.| ++.+|||||+++.
T Consensus 40 ~~d~vv~~GDlv~~~~~~~~~~~~-----~~~~~l-------------------------~~l~~p-~~~v~GNHD~~~~ 88 (267)
T cd07396 40 SLDFVVQLGDIIDGDNARAEEALD-----AVLAIL-------------------------DRLKGP-VHHVLGNHDLYNP 88 (267)
T ss_pred CCCEEEECCCeecCCCchHHHHHH-----HHHHHH-------------------------HhcCCC-EEEecCccccccc
Confidence 489999999999754321 2232 222222 122345 9999999999865
Q ss_pred hhHHHHHhhccccCCccccCCCcceEEEECCCcEEEEEEecCC----------------------------------CCC
Q 003788 276 LNTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLAL----------------------------------HCD 321 (795)
Q Consensus 276 L~~F~r~F~~~~~~gGw~~pQ~~SYfAl~Lp~~wwLlgLDsql----------------------------------~~d 321 (795)
...... . . +.......||++... +|.+++||+.. .+.
T Consensus 89 ~~~~~~---~-~----~~~~~~~~yysf~~~-~~~~i~lds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 159 (267)
T cd07396 89 SREYLL---L-Y----TLLGLGAPYYSFSPG-GIRFIVLDGYDISALGRPEDTPKAENADDNSNLGLYLSEPRFVDWNGG 159 (267)
T ss_pred cHhhhh---c-c----cccCCCCceEEEecC-CcEEEEEeCCccccccCCCCChhhhhHHHhchhhhhccCccceeccCc
Confidence 332111 0 0 111133458999876 69999999953 346
Q ss_pred CCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCcccccccCCcchhhHHHHHhhh-C-CceeEEEcCccCCCcceeecCCC
Q 003788 322 IDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYL-K-GRCKLRIAGDMHHYMRHSYVPSD 399 (795)
Q Consensus 322 ID~~Q~~wf~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l-~-~rV~L~LAGHiHhY~R~~~~~~~ 399 (795)
++..|++||++.+++....+.++||++|||.+..... ......+- ..+.+++ + .+|+++|+||+|.++.... .
T Consensus 160 l~~~Ql~WL~~~L~~~~~~~~~viV~~Hhp~~~~~~~-~~~~~~~~-~~~~~ll~~~~~V~~v~~GH~H~~~~~~~---~ 234 (267)
T cd07396 160 IGEEQLQWLRNELQEADANGEKVIIFSHFPLHPESTS-PHGLLWNH-EEVLSILRAYGCVKACISGHDHEGGYAQR---H 234 (267)
T ss_pred CCHHHHHHHHHHHHHHHhcCCeEEEEEeccCCCCCCC-ccccccCH-HHHHHHHHhCCCEEEEEcCCcCCCCcccc---C
Confidence 7889999999999754445678999999998865431 11011111 2223333 3 4799999999999874431 1
Q ss_pred CCcccceEEEecCCCc
Q 003788 400 GPVYVQHLLVNGCGGA 415 (795)
Q Consensus 400 G~~~~~~lIVsGGGGA 415 (795)
+.+++++|+=.-
T Consensus 235 ----gi~~~~~~a~~~ 246 (267)
T cd07396 235 ----GIHFLTLEGMVE 246 (267)
T ss_pred ----CeeEEEechhhc
Confidence 236788776443
No 10
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.64 E-value=4.4e-15 Score=156.36 Aligned_cols=199 Identities=20% Similarity=0.303 Sum_probs=114.3
Q ss_pred CCCceEEEEEeecC---CC------CCChhHHHHHhcCcccccccCCCCcccCCccEEEEcccccCCCCChhhhhhcccc
Q 003788 154 EKEDLWFDFMADTG---DG------GNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFR 224 (795)
Q Consensus 154 ~~~~~wFd~VaDtG---DG------~~stY~VA~llAq~~L~~~~~~~~~~lPrgdfLvlgGDlvYp~gs~e~Y~~rf~~ 224 (795)
+++++.|..|+|+= +. .+..-+..+++++-+. ..+.+|+||++||++- .++.++|+. +.+
T Consensus 11 ~~~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~---------~~~~~D~vvitGDl~~-~~~~~~~~~-~~~ 79 (275)
T PRK11148 11 GEARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRA---------QQHEFDLIVATGDLAQ-DHSSEAYQH-FAE 79 (275)
T ss_pred CCCCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHh---------hCCCCCEEEECCCCCC-CCCHHHHHH-HHH
Confidence 34779999999993 21 1222334444433210 1256899999999987 455555543 222
Q ss_pred chhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChhHHHHHhhccccCCccccCCCcceEEEE
Q 003788 225 PFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQ 304 (795)
Q Consensus 225 Pye~Al~~~~~~~~~~i~~~~p~~p~~~~~l~~~~~P~ifAIPGNHDwyDGL~~F~r~F~~~~~~gGw~~pQ~~SYfAl~ 304 (795)
.+ +.++.| ++.||||||.+.. +...+... ++. ..|+.+.
T Consensus 80 ----~l-------------------------~~l~~P-v~~v~GNHD~~~~---~~~~~~~~----~~~----~~~~~~~ 118 (275)
T PRK11148 80 ----GI-------------------------APLRKP-CVWLPGNHDFQPA---MYSALQDA----GIS----PAKHVLI 118 (275)
T ss_pred ----HH-------------------------hhcCCc-EEEeCCCCCChHH---HHHHHhhc----CCC----ccceEEe
Confidence 21 123445 9999999998643 33333321 121 1233333
Q ss_pred CCCcEEEEEEecCC----CCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCcccccccCC-cchhhHHHHHhhh-CC-
Q 003788 305 LPKGWWVFGLDLAL----HCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNV-SGKNVKHLICDYL-KG- 377 (795)
Q Consensus 305 Lp~~wwLlgLDsql----~~dID~~Q~~wf~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~-~~~~l~~lie~~l-~~- 377 (795)
..+|.+++||+.. .+.++..|++||++.+++ . +++++||++|||++..+..+.++ .-.+- ..+.+++ ++
T Consensus 119 -~~~~~~i~Lds~~~g~~~G~l~~~ql~wL~~~L~~-~-~~~~~vv~~hH~P~~~~~~~~d~~~l~n~-~~l~~ll~~~~ 194 (275)
T PRK11148 119 -GEHWQILLLDSQVFGVPHGELSEYQLEWLERKLAD-A-PERHTLVLLHHHPLPAGCAWLDQHSLRNA-HELAEVLAKFP 194 (275)
T ss_pred -cCCEEEEEecCCCCCCcCCEeCHHHHHHHHHHHhh-C-CCCCeEEEEcCCCCCCCcchhhccCCCCH-HHHHHHHhcCC
Confidence 4459999999975 456789999999999974 3 34555565665443332211111 11111 2233334 43
Q ss_pred ceeEEEcCccCCCcceeecCCCCCcccceEEEecCCCc
Q 003788 378 RCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGA 415 (795)
Q Consensus 378 rV~L~LAGHiHhY~R~~~~~~~G~~~~~~lIVsGGGGA 415 (795)
+|+++|+||+|....... . +..++++++-+.
T Consensus 195 ~v~~vl~GH~H~~~~~~~-~------gi~~~~~ps~~~ 225 (275)
T PRK11148 195 NVKAILCGHIHQELDLDW-N------GRRLLATPSTCV 225 (275)
T ss_pred CceEEEecccChHHhceE-C------CEEEEEcCCCcC
Confidence 799999999998644321 1 225677666554
No 11
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.60 E-value=1.2e-14 Score=152.39 Aligned_cols=129 Identities=17% Similarity=0.172 Sum_probs=81.0
Q ss_pred cEEEeCCCCCCCCCh--hHHHHHhhccccCCccccCCCcceEEE--ECCCcEEEEEEecCCC----------CCCCHHHH
Q 003788 262 QCYIIPGNHDWFDGL--NTFMRFICHKSWLGGWFMPQKKSYFAL--QLPKGWWVFGLDLALH----------CDIDVYQF 327 (795)
Q Consensus 262 ~ifAIPGNHDwyDGL--~~F~r~F~~~~~~gGw~~pQ~~SYfAl--~Lp~~wwLlgLDsql~----------~dID~~Q~ 327 (795)
+++.||||||.|+-. +.+.+++.+ + .++.++... ||.. +.+ ++.++|||+... +.++..|+
T Consensus 78 p~~~v~GNHD~~~~~~~~~~~~~~~~--y-~~~~~~~~~-~~~~~~~~~-~~~~I~Ldt~~~~~~~~~~~~~g~l~~~ql 152 (256)
T cd07401 78 KWFDIRGNHDLFNIPSLDSENNYYRK--Y-SATGRDGSF-SFSHTTRFG-NYSFIGVDPTLFPGPKRPFNFFGSLDKKLL 152 (256)
T ss_pred eEEEeCCCCCcCCCCCccchhhHHHH--h-heecCCCcc-ceEEEecCC-CEEEEEEcCccCCCCCCCCceeccCCHHHH
Confidence 399999999997321 112222211 1 122222222 3333 334 499999999742 56789999
Q ss_pred HHHHHHHHhhcCCCCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCCcceeecCCCC
Q 003788 328 KFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVPSDG 400 (795)
Q Consensus 328 ~wf~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY~R~~~~~~~G 400 (795)
+|+++.+++ ..+.+++||++|+|.+....... .....+..+++ +++|+++|+||+|.+++-.|....|
T Consensus 153 ~wL~~~L~~-~~~~~~~IV~~HhP~~~~~~~~~-~~~~~~~~ll~---~~~v~~vl~GH~H~~~~~~p~h~~~ 220 (256)
T cd07401 153 DRLEKELEK-STNSNYTIWFGHYPTSTIISPSA-KSSSKFKDLLK---KYNVTAYLCGHLHPLGGLEPVHYAG 220 (256)
T ss_pred HHHHHHHHh-cccCCeEEEEEcccchhccCCCc-chhHHHHHHHH---hcCCcEEEeCCccCCCcceeeeecC
Confidence 999998864 45567999999999865432111 11111223333 5689999999999999977765444
No 12
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.54 E-value=6.5e-14 Score=143.06 Aligned_cols=159 Identities=16% Similarity=0.148 Sum_probs=96.3
Q ss_pred eEEEEEeecCCCCCChhH-HHHHhcCcccccccCCCCcccCCccEEEEcccccCCCCChhhhhhccccchhhhcCCCCCC
Q 003788 158 LWFDFMADTGDGGNSSYS-VARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWY 236 (795)
Q Consensus 158 ~wFd~VaDtGDG~~stY~-VA~llAq~~L~~~~~~~~~~lPrgdfLvlgGDlvYp~gs~e~Y~~rf~~Pye~Al~~~~~~ 236 (795)
+.|.+++||--+....-. ....+.+ .++. ....++|+++++||++..+...++|..-. +-++.
T Consensus 1 f~~~~~~D~q~~~~~~~~~~~~~~~~-i~~~------~~~~~~d~iv~~GDl~~~~~~~~~~~~~~-~~~~~-------- 64 (214)
T cd07399 1 FTLAVLPDTQYYTESYPEVFDAQTDW-IVDN------AEALNIAFVLHLGDIVDDGDNDAEWEAAD-KAFAR-------- 64 (214)
T ss_pred CEEEEecCCCcCCcCCHHHHHHHHHH-HHHH------HHHcCCCEEEECCCccCCCCCHHHHHHHH-HHHHH--------
Confidence 578999999544332211 1111111 1110 01245899999999998655444553211 11111
Q ss_pred cccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChhHHHHHhhccccCCccccCCCcceEEEECCCcEEEEEEec
Q 003788 237 KKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDL 316 (795)
Q Consensus 237 ~~~~i~~~~p~~p~~~~~l~~~~~P~ifAIPGNHDwyDGL~~F~r~F~~~~~~gGw~~pQ~~SYfAl~Lp~~wwLlgLDs 316 (795)
+++...| ++.+||||| .++++|+
T Consensus 65 ------------------l~~~~~p-~~~~~GNHD--------------------------------------~~~~ld~ 87 (214)
T cd07399 65 ------------------LDKAGIP-YSVLAGNHD--------------------------------------LVLALEF 87 (214)
T ss_pred ------------------HHHcCCc-EEEECCCCc--------------------------------------chhhCCC
Confidence 1111234 999999999 1344443
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCcccccccCC----cchhhHHHHHhhh-CC-ceeEEEcCccCCC
Q 003788 317 ALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNV----SGKNVKHLICDYL-KG-RCKLRIAGDMHHY 390 (795)
Q Consensus 317 ql~~dID~~Q~~wf~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~----~~~~l~~lie~~l-~~-rV~L~LAGHiHhY 390 (795)
.++..|++||++++++ .++.++|+++|||.+..+...+.. ...+-...+++++ ++ +|+++|+||+|.+
T Consensus 88 ----~~~~~ql~WL~~~L~~--~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~ 161 (214)
T cd07399 88 ----GPRDEVLQWANEVLKK--HPDRPAILTTHAYLNCDDSRPDSIDYDSDVNDGQQIWDKLVKKNDNVFMVLSGHVHGA 161 (214)
T ss_pred ----CCCHHHHHHHHHHHHH--CCCCCEEEEecccccCCCCcCcccccccccccHHHHHHHHHhCCCCEEEEEccccCCC
Confidence 3568999999999974 446799999999999765322211 0112234556666 44 6999999999998
Q ss_pred cceee
Q 003788 391 MRHSY 395 (795)
Q Consensus 391 ~R~~~ 395 (795)
.+-..
T Consensus 162 ~~~~~ 166 (214)
T cd07399 162 GRTTL 166 (214)
T ss_pred ceEEE
Confidence 77765
No 13
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.51 E-value=7.8e-14 Score=147.72 Aligned_cols=167 Identities=19% Similarity=0.169 Sum_probs=103.0
Q ss_pred CCccEEEEcccccCCCCChhhhh-------hccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCC
Q 003788 197 PRGDVLLIGGDLAYPNPSAFTYE-------RRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGN 269 (795)
Q Consensus 197 PrgdfLvlgGDlvYp~gs~e~Y~-------~rf~~Pye~Al~~~~~~~~~~i~~~~p~~p~~~~~l~~~~~P~ifAIPGN 269 (795)
+.+||+|++||++......+..+ ..+.+.++..+ +..++++++||
T Consensus 67 ~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~----------------------------~~~pv~~~~GN 118 (296)
T cd00842 67 PKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAF----------------------------PDTPVYPALGN 118 (296)
T ss_pred CCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhC----------------------------CCCCEEEcCCC
Confidence 67899999999999875432221 22223333221 22349999999
Q ss_pred CCCCCC--------hhHHHH----HhhccccCCccccCCCcceEEEECCCcEEEEEEecCCCC-----------CCCHHH
Q 003788 270 HDWFDG--------LNTFMR----FICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLALHC-----------DIDVYQ 326 (795)
Q Consensus 270 HDwyDG--------L~~F~r----~F~~~~~~gGw~~pQ~~SYfAl~Lp~~wwLlgLDsql~~-----------dID~~Q 326 (795)
||.+.. ...+.. .+..--+..+..+-.+..||+..+..++++|+||++... .....|
T Consensus 119 HD~~p~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Q 198 (296)
T cd00842 119 HDSYPVNQFPPNNSPSWLYDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQ 198 (296)
T ss_pred CCCCcccccCCcccccHHHHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHH
Confidence 998743 111111 111100000111223457999997777999999997421 223689
Q ss_pred HHHHHHHHHhhcCCCCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCCcc
Q 003788 327 FKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMR 392 (795)
Q Consensus 327 ~~wf~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY~R 392 (795)
++||+++|++....+.+|||++|+|.............+.+..+++++ +..|...|+||+|..+-
T Consensus 199 l~WL~~~L~~a~~~~~~v~I~~HiPp~~~~~~~~~~~~~~~~~ii~~y-~~~i~~~~~GH~H~d~~ 263 (296)
T cd00842 199 LQWLEDELQEAEQAGEKVWIIGHIPPGVNSYDTLENWSERYLQIINRY-SDTIAGQFFGHTHRDEF 263 (296)
T ss_pred HHHHHHHHHHHHHCCCeEEEEeccCCCCcccccchHHHHHHHHHHHHH-HHhhheeeecccccceE
Confidence 999999998655567899999999998764321101123344566665 34488999999996543
No 14
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.49 E-value=3.4e-14 Score=128.38 Aligned_cols=193 Identities=17% Similarity=0.193 Sum_probs=95.4
Q ss_pred eEEEEEeecCCCCCChhHHHHHhcCcccccccCCCCcccCCccEEEEcccccCCCCChhhhhhccccchhhhcCCCCCCc
Q 003788 158 LWFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWYK 237 (795)
Q Consensus 158 ~wFd~VaDtGDG~~stY~VA~llAq~~L~~~~~~~~~~lPrgdfLvlgGDlvYp~gs~e~Y~~rf~~Pye~Al~~~~~~~ 237 (795)
+.|.+++|+.-+..........+.+.. ..+++|+||++||+++.+...+.....+. .+...
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~----------~~~~~d~ii~~GD~~~~~~~~~~~~~~~~-~~~~~-------- 61 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIA----------AENKPDFIIFLGDLVDGGNPSEEWRAQFW-FFIRL-------- 61 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHH----------HHTTTSEEEEESTSSSSSSHHHHHHHHHH-HHHHH--------
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHh----------ccCCCCEEEeeccccccccccccchhhhc-cchhh--------
Confidence 578999999655443321122221111 13568999999999998765544444331 01110
Q ss_pred ccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChhHHHHHhhc-ccc--CC-ccccCCCcceEEEECCCcEEEEE
Q 003788 238 KDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICH-KSW--LG-GWFMPQKKSYFALQLPKGWWVFG 313 (795)
Q Consensus 238 ~~~i~~~~p~~p~~~~~l~~~~~P~ifAIPGNHDwyDGL~~F~r~F~~-~~~--~g-Gw~~pQ~~SYfAl~Lp~~wwLlg 313 (795)
.....| ++.|+||||++............ ... .. .+...++. ......... +...
T Consensus 62 ------------------~~~~~~-~~~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~ 120 (200)
T PF00149_consen 62 ------------------LNPKIP-VYFILGNHDYYSGNSFYGFYDYQFEDYYGNYNYYYSYFNN-KVIFDNDNF-WFNS 120 (200)
T ss_dssp ------------------HHTTTT-EEEEE-TTSSHHHHHHHHHHHHHHSSEEECSSEEECTESS-EEEEEETTE-EEEE
T ss_pred ------------------hhcccc-ccccccccccceeccccccccccccccccccccccccCcc-eeeeccccc-cccc
Confidence 011234 99999999998653332221111 110 00 01000110 012222221 2222
Q ss_pred EecCCCCCCC-HHHHHHHHHHHHhhcCCCCeEEEEecCCCCcccccccCC-cchhhHHHHHhhh-CCceeEEEcCccCCC
Q 003788 314 LDLALHCDID-VYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNV-SGKNVKHLICDYL-KGRCKLRIAGDMHHY 390 (795)
Q Consensus 314 LDsql~~dID-~~Q~~wf~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~-~~~~l~~lie~~l-~~rV~L~LAGHiHhY 390 (795)
.......... ..|..|..........+.+++||++|+|.+......... ........++.++ +.+|+++|+||+|.|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 121 GNNEYPDYGMEAQQEWWLWLLLLLEAKNDDPVIVFTHHPPYSSSSDSSSYGNESKGREALEELLKKYNVDLVLSGHTHRY 200 (200)
T ss_dssp HCCHTHHSEHHHHHHHHHHHHHHHHEEEESEEEEEESSSSSTTSSSTHHHSSEEEHHHHHHHHHHHTTCSEEEEESSSSE
T ss_pred ccccccccccccchhcccccccccccccccceeEEEecCCCCccccccccchhhccHHHHHHHHhhCCCCEEEeCceecC
Confidence 2221111122 233333333333334567899999999999886432210 0122223334444 679999999999986
No 15
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.42 E-value=3.2e-12 Score=132.10 Aligned_cols=120 Identities=15% Similarity=0.102 Sum_probs=73.3
Q ss_pred CCcEEEeCCCCCCCC-ChhHHHHHhhccccCCccccCCCcceEEEECCCcEEEEEEecCCC-----------------CC
Q 003788 260 GPQCYIIPGNHDWFD-GLNTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLALH-----------------CD 321 (795)
Q Consensus 260 ~P~ifAIPGNHDwyD-GL~~F~r~F~~~~~~gGw~~pQ~~SYfAl~Lp~~wwLlgLDsql~-----------------~d 321 (795)
.| +|+||||||+|. +.+.+.+.+.. .++....+ .++.++. +.|+|++.... +.
T Consensus 72 ~~-v~~V~GNHD~~~~~~~~~~~~l~~----~~~~~~~n---~~~~~~~-i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (232)
T cd07393 72 GT-KVLLKGNHDYWWGSASKLRKALEE----SRLALLFN---NAYIDDD-VAICGTRGWDNPGNPWPPINETLKVEEDEK 142 (232)
T ss_pred CC-eEEEeCCccccCCCHHHHHHHHHh----cCeEEecc---CcEEECC-EEEEEEEeeCCCCCccccccccccchhHHH
Confidence 45 899999999864 34444443332 12322212 2344554 89999874211 11
Q ss_pred CCHHHHHHHHHHHHhhcCC--CCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCCcceeec
Q 003788 322 IDVYQFKFFAELVKEQVGE--RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYV 396 (795)
Q Consensus 322 ID~~Q~~wf~~ll~~~v~~--~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY~R~~~~ 396 (795)
+...|++|+++.+++.... +.++|+++|+|.+..+. ....+...+++ .+++++|+||+|++++..|-
T Consensus 143 ~~~~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~~-----~~~~~~~~~~~---~~v~~vl~GH~H~~~~~~~~ 211 (232)
T cd07393 143 IFERELERLELSLKAAKKREKEKIKIVMLHYPPANENG-----DDSPISKLIEE---YGVDICVYGHLHGVGRDRAI 211 (232)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCcCCCC-----CHHHHHHHHHH---cCCCEEEECCCCCCcccccc
Confidence 1245899999988642222 24699999999876542 11223233344 47999999999999886644
No 16
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.33 E-value=2.5e-11 Score=125.12 Aligned_cols=178 Identities=23% Similarity=0.341 Sum_probs=108.1
Q ss_pred EEEEEeec--CC-CCCChhHHHHHhcCcccccccCCCCcccCCccEEEEcccccCCCCChhhhhhc--cccchhhhcCCC
Q 003788 159 WFDFMADT--GD-GGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERR--LFRPFEYALQPP 233 (795)
Q Consensus 159 wFd~VaDt--GD-G~~stY~VA~llAq~~L~~~~~~~~~~lPrgdfLvlgGDlvYp~gs~e~Y~~r--f~~Pye~Al~~~ 233 (795)
.|..|+|+ |. +.++.-.++.++++-. .+++|+||++||++-. |..++|+.. |.+ ..
T Consensus 2 ~i~~isD~H~~~~~~~~~~~~~~~~~~i~-----------~~~~D~~v~tGDl~~~-~~~~~~~~~~~~l~----~~--- 62 (301)
T COG1409 2 RIAHISDLHLGALGVDSEELLEALLAAIE-----------QLKPDLLVVTGDLTND-GEPEEYRRLKELLA----RL--- 62 (301)
T ss_pred eEEEEecCcccccccchHHHHHHHHHHHh-----------cCCCCEEEEccCcCCC-CCHHHHHHHHHHHh----hc---
Confidence 46678888 42 4555555555555422 2567999999999987 777777643 222 00
Q ss_pred CCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChhHHHHHhhccccCCccccCCCcceEEEECC-CcEEEE
Q 003788 234 PWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQLP-KGWWVF 312 (795)
Q Consensus 234 ~~~~~~~i~~~~p~~p~~~~~l~~~~~P~ifAIPGNHDwyDGL~~F~r~F~~~~~~gGw~~pQ~~SYfAl~Lp-~~wwLl 312 (795)
....| ++.+|||||-+..-...........+ .++..... .+|+++
T Consensus 63 -----------------------~~~~~-~~~vpGNHD~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 108 (301)
T COG1409 63 -----------------------ELPAP-VIVVPGNHDARVVNGEAFSDQFFNRY----------AVLVGACSSGGWRVI 108 (301)
T ss_pred -----------------------cCCCc-eEeeCCCCcCCchHHHHhhhhhcccC----------cceEeeccCCceEEE
Confidence 11334 99999999987763333332221110 11111111 459999
Q ss_pred EEecCC----CCCCCHHHHHHHHHHHHhhcCCC--CeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCc--eeEEEc
Q 003788 313 GLDLAL----HCDIDVYQFKFFAELVKEQVGER--DSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGR--CKLRIA 384 (795)
Q Consensus 313 gLDsql----~~dID~~Q~~wf~~ll~~~v~~~--d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~r--V~L~LA 384 (795)
++|+.. .+.++..|++|+++.+++ .... ..+|+++|||..+.........-.............. |+++|+
T Consensus 109 ~~d~~~~~~~~G~~~~~q~~~l~~~l~~-~~~~~~~~~v~~~hh~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vl~ 187 (301)
T COG1409 109 GLDSSVPGVPLGRLGAEQLDWLEEALAA-APERAKDTVVVLHHHPLPSPGTGVDRVALRDAGELLDVLIAHGNDVRLVLS 187 (301)
T ss_pred EecCCCCCCCCCEECHHHHHHHHHHHHh-CccccCceEEEecCCCCCCCCCccceeeeecchhHHHHHHhcCCceEEEEe
Confidence 999975 366889999999999974 2222 3778999999888765433222111112222222233 999999
Q ss_pred CccCCC
Q 003788 385 GDMHHY 390 (795)
Q Consensus 385 GHiHhY 390 (795)
||+|--
T Consensus 188 GH~H~~ 193 (301)
T COG1409 188 GHIHLA 193 (301)
T ss_pred Cccccc
Confidence 999954
No 17
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.31 E-value=2.3e-11 Score=128.44 Aligned_cols=120 Identities=17% Similarity=0.115 Sum_probs=77.6
Q ss_pred cEEEeCCCCCCCCC-------hhHHHHHhhccccCCccccCCCcceEEEECCCcEEEEEEecCCC-----CCCCHHHHHH
Q 003788 262 QCYIIPGNHDWFDG-------LNTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLALH-----CDIDVYQFKF 329 (795)
Q Consensus 262 ~ifAIPGNHDwyDG-------L~~F~r~F~~~~~~gGw~~pQ~~SYfAl~Lp~~wwLlgLDsql~-----~dID~~Q~~w 329 (795)
+++.||||||+.-+ ...|.++|.. .++++..++ |.+++||+... +.+...|.+|
T Consensus 86 pv~~VpGNHDig~~~~~~~~~~~rf~~~Fg~-------------~~~~~~~~~-~~fV~Lds~~l~~~~~~~~~~~~~~~ 151 (257)
T cd08163 86 MVESLPGNHDIGFGNGVVLPVRQRFEKYFGP-------------TSRVIDVGN-HTFVILDTISLSNKDDPDVYQPPREF 151 (257)
T ss_pred eEEEeCCCcccCCCCCCCHHHHHHHHHHhCC-------------CceEEEECC-EEEEEEccccccCCcccccchhHHHH
Confidence 49999999997322 2234344431 246788875 89999999642 2355689999
Q ss_pred HHHHHHhhcCCCCeEEEEecCCCCcccccc------cC---C-----cch-hhHHHH-Hhhh-CCceeEEEcCccCCCcc
Q 003788 330 FAELVKEQVGERDSVIIMTHEPNWLLDWYF------NN---V-----SGK-NVKHLI-CDYL-KGRCKLRIAGDMHHYMR 392 (795)
Q Consensus 330 f~~ll~~~v~~~d~VIL~tHeP~w~~~~~~------~~---~-----~~~-~l~~li-e~~l-~~rV~L~LAGHiHhY~R 392 (795)
+++.+++ ..++.++||++|+|.|-..... .. + ..+ .+.... +++| .-+.+++||||+|.|=.
T Consensus 152 l~~~l~~-~~~~~p~ILl~H~Plyr~~~~~cg~~re~~~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH~~C~ 230 (257)
T cd08163 152 LHSFSAM-KVKSKPRILLTHVPLYRPPNTSCGPLRESKTPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDHDYCE 230 (257)
T ss_pred HHhhhhc-cCCCCcEEEEeccccccCCCCCCCCccccCCCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCCccce
Confidence 9998753 4567899999999999774311 00 0 011 122111 2222 34889999999999877
Q ss_pred eeec
Q 003788 393 HSYV 396 (795)
Q Consensus 393 ~~~~ 396 (795)
+.-.
T Consensus 231 ~~h~ 234 (257)
T cd08163 231 VVHE 234 (257)
T ss_pred eEcc
Confidence 6543
No 18
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.27 E-value=2.8e-11 Score=121.47 Aligned_cols=77 Identities=19% Similarity=0.061 Sum_probs=50.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhc---CCCCeEEEEecCCCCccccccc----------C-Cc-chhhHHHHHhhh-CCceeE
Q 003788 318 LHCDIDVYQFKFFAELVKEQV---GERDSVIIMTHEPNWLLDWYFN----------N-VS-GKNVKHLICDYL-KGRCKL 381 (795)
Q Consensus 318 l~~dID~~Q~~wf~~ll~~~v---~~~d~VIL~tHeP~w~~~~~~~----------~-~~-~~~l~~lie~~l-~~rV~L 381 (795)
..+.++..|.+||++.+++.. +...+.|+++|+|......... + .. ..+-..+++.+. ..+|++
T Consensus 88 ~~g~l~~~ql~wL~~~l~~~~~~~~~~~~~l~f~H~P~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~v~~ 167 (199)
T cd07383 88 GYDWIRPSQIEWFKETSAALKKKYGKPIPSLAFFHIPLPEYREVWEGKGKVPGINNEKVCCPKINSGLFKALLERGDVKG 167 (199)
T ss_pred CCCCCCHHHHHHHHHHHHHHhhccCCCCcceEEEecChHHHHhhhcccCCCCccCCcccCCCcCCcHHHHHHHHcCCeEE
Confidence 456788999999999986421 3557999999999876532211 1 00 111223344443 468999
Q ss_pred EEcCccCCCccee
Q 003788 382 RIAGDMHHYMRHS 394 (795)
Q Consensus 382 ~LAGHiHhY~R~~ 394 (795)
+++||+|.++...
T Consensus 168 v~~GH~H~~~~~~ 180 (199)
T cd07383 168 VFCGHDHGNDFCG 180 (199)
T ss_pred EEeCCCCCcceec
Confidence 9999999876543
No 19
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.23 E-value=2e-10 Score=121.59 Aligned_cols=196 Identities=15% Similarity=0.127 Sum_probs=107.1
Q ss_pred CCceEEEEEeecCCC-CCChhHHHHHhcCcccccccCCCCcccCCccEEEEcccccCCCCChhhhhhccccchhhhcCCC
Q 003788 155 KEDLWFDFMADTGDG-GNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPP 233 (795)
Q Consensus 155 ~~~~wFd~VaDtGDG-~~stY~VA~llAq~~L~~~~~~~~~~lPrgdfLvlgGDlvYp~gs~e~Y~~rf~~Pye~Al~~~ 233 (795)
.+++.+.+++|+--+ +.+.-...+++.+-. ..++|+|+++||++... ..++.+ . +...+.
T Consensus 47 ~~~~rI~~lSDlH~~~~~~~~~l~~~v~~i~-----------~~~pDlVli~GD~~d~~-~~~~~~-~----~~~~L~-- 107 (271)
T PRK11340 47 AAPFKILFLADLHYSRFVPLSLISDAIALGI-----------EQKPDLILLGGDYVLFD-MPLNFS-A----FSDVLS-- 107 (271)
T ss_pred CCCcEEEEEcccCCCCcCCHHHHHHHHHHHH-----------hcCCCEEEEccCcCCCC-ccccHH-H----HHHHHH--
Confidence 357999999999655 333222344333211 24689999999977521 111111 1 111111
Q ss_pred CCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChh---HHHHHhhccccCCccccCCCcceEEEECCC-cE
Q 003788 234 PWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLN---TFMRFICHKSWLGGWFMPQKKSYFALQLPK-GW 309 (795)
Q Consensus 234 ~~~~~~~i~~~~p~~p~~~~~l~~~~~P~ifAIPGNHDwyDGL~---~F~r~F~~~~~~gGw~~pQ~~SYfAl~Lp~-~w 309 (795)
+++. ..| +|+|+||||++.+.. .+.+.+. -.|+..-++.+. .++.+. ..
T Consensus 108 --------------------~L~~-~~p-v~~V~GNHD~~~~~~~~~~~~~~l~----~~gi~lL~n~~~-~i~~~~~~i 160 (271)
T PRK11340 108 --------------------PLAE-CAP-TFACFGNHDRPVGTEKNHLIGETLK----SAGITVLFNQAT-VIATPNRQF 160 (271)
T ss_pred --------------------HHhh-cCC-EEEecCCCCcccCccchHHHHHHHH----hcCcEEeeCCeE-EEeeCCcEE
Confidence 0111 235 999999999875432 2222222 235655555443 455543 37
Q ss_pred EEEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCC
Q 003788 310 WVFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHH 389 (795)
Q Consensus 310 wLlgLDsql~~dID~~Q~~wf~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHh 389 (795)
+|+|+|+-..+..+.. +...+++..|+++|+|...... -...++|.||||+|.
T Consensus 161 ~i~G~~d~~~~~~~~~----------~~~~~~~~~IlL~H~P~~~~~~-----------------~~~~~dL~lsGHTHG 213 (271)
T PRK11340 161 ELVGTGDLWAGQCKPP----------PASEANLPRLVLAHNPDSKEVM-----------------RDEPWDLMLCGHTHG 213 (271)
T ss_pred EEEEecchhccCCChh----------HhcCCCCCeEEEEcCCChhHhh-----------------ccCCCCEEEeccccC
Confidence 8999986433222211 1123478999999999864321 134799999999996
Q ss_pred Cccee--------ec----CCCCC--cccceEEEecCCCcccccccccC
Q 003788 390 YMRHS--------YV----PSDGP--VYVQHLLVNGCGGAFLHPTHVFS 424 (795)
Q Consensus 390 Y~R~~--------~~----~~~G~--~~~~~lIVsGGGGAfLhPTH~~~ 424 (795)
=|-.. +. ...|- ....+++||-|-|.. .|.|...
T Consensus 214 GQi~lP~~~~~~~~~~~~~~~~G~~~~~~~~l~Vs~G~G~~-~p~R~~~ 261 (271)
T PRK11340 214 GQLRVPLVGEPFAPVEDKRYVAGLNAFGERQIYTTRGVGSL-YGLRLNC 261 (271)
T ss_pred CeEEccccCccccccccCcccCCcEEeCCcEEEEeCCccCC-cCCcccC
Confidence 33221 11 11222 123456777776754 5776654
No 20
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.23 E-value=1.2e-10 Score=113.42 Aligned_cols=143 Identities=15% Similarity=0.220 Sum_probs=84.4
Q ss_pred CCccEEEEcccccCCCCChhhhhhccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCCh
Q 003788 197 PRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGL 276 (795)
Q Consensus 197 PrgdfLvlgGDlvYp~gs~e~Y~~rf~~Pye~Al~~~~~~~~~~i~~~~p~~p~~~~~l~~~~~P~ifAIPGNHDwyDGL 276 (795)
.++|+||++||++.- ++.++|+. + +.. +..+.| ++.||||||...
T Consensus 22 ~~~D~vv~~GDl~~~-~~~~~~~~-~-~~l-----------------------------~~~~~p-~~~v~GNHD~~~-- 66 (188)
T cd07392 22 EEADAVIVAGDITNF-GGKEAAVE-I-NLL-----------------------------LAIGVP-VLAVPGNCDTPE-- 66 (188)
T ss_pred cCCCEEEECCCccCc-CCHHHHHH-H-HHH-----------------------------HhcCCC-EEEEcCCCCCHH--
Confidence 357999999998864 43333321 1 111 122345 999999999643
Q ss_pred hHHHHHhhccccCCccccCCCcceEEEECCCcEEEEEEecCC------CCCCCHHHHHHHHHHHHhhcCCCCeEEEEecC
Q 003788 277 NTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLAL------HCDIDVYQFKFFAELVKEQVGERDSVIIMTHE 350 (795)
Q Consensus 277 ~~F~r~F~~~~~~gGw~~pQ~~SYfAl~Lp~~wwLlgLDsql------~~dID~~Q~~wf~~ll~~~v~~~d~VIL~tHe 350 (795)
.+..+. .++..... + .+.++ +|.|+|+|+.. .+.....|.+|+ +.+. ..+++.+|+++|+
T Consensus 67 --~~~~~~-----~~~~~~~~-~--~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~~l~--~~~~~~~ilv~H~ 132 (188)
T cd07392 67 --ILGLLT-----SAGLNLHG-K--VVEVG-GYTFVGIGGSNPTPFNTPIELSEEEIVSD-GRLN--NLLAKNLILVTHA 132 (188)
T ss_pred --HHHhhh-----cCcEecCC-C--EEEEC-CEEEEEeCCCCCCCCCCccccCHHHHHHh-hhhh--ccCCCCeEEEECC
Confidence 122111 11222222 1 23455 49999998642 234567889888 3332 2456899999999
Q ss_pred CCCcc--cccccC--CcchhhHHHHHhhhCCceeEEEcCccCCCc
Q 003788 351 PNWLL--DWYFNN--VSGKNVKHLICDYLKGRCKLRIAGDMHHYM 391 (795)
Q Consensus 351 P~w~~--~~~~~~--~~~~~l~~lie~~l~~rV~L~LAGHiHhY~ 391 (795)
|++.. +..... .....+..+++++ +++++|+||+|.-.
T Consensus 133 pp~~~~~d~~~~~~~~g~~~l~~li~~~---~~~~~l~GH~H~~~ 174 (188)
T cd07392 133 PPYGTAVDRVSGGFHVGSKAIRKFIEER---QPLLCICGHIHESR 174 (188)
T ss_pred CCcCCcccccCCCCccCCHHHHHHHHHh---CCcEEEEecccccc
Confidence 99752 211111 1234455566554 88999999999743
No 21
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.17 E-value=4.6e-10 Score=113.26 Aligned_cols=197 Identities=18% Similarity=0.199 Sum_probs=110.8
Q ss_pred ceEEEEEeecCCCCCCh-hHHHHHhcCcccccccCCCCcccCCccEEEEcccccCCCCChhhhhhccccchhhhcCCCCC
Q 003788 157 DLWFDFMADTGDGGNSS-YSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPW 235 (795)
Q Consensus 157 ~~wFd~VaDtGDG~~st-Y~VA~llAq~~L~~~~~~~~~~lPrgdfLvlgGDlvYp~gs~e~Y~~rf~~Pye~Al~~~~~ 235 (795)
++.+.+++|+--+.... ....+++.+-. ..++|+++++||++....... ..+.+.++.
T Consensus 1 ~~~i~~~sDlH~~~~~~~~~~~~~~~~~~-----------~~~~d~vl~~GD~~~~~~~~~---~~~~~~l~~------- 59 (223)
T cd07385 1 GLRIAHLSDLHLGPFVSRERLERLVEKIN-----------ALKPDLVVLTGDLVDGSVDVL---ELLLELLKK------- 59 (223)
T ss_pred CCEEEEEeecCCCccCCHHHHHHHHHHHh-----------ccCCCEEEEcCcccCCcchhh---HHHHHHHhc-------
Confidence 46789999996543322 23444443221 124789999999988654332 122111221
Q ss_pred CcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChhHH-HHHhhccccCCccccCCCcceEEEECCC-cEEEEE
Q 003788 236 YKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTF-MRFICHKSWLGGWFMPQKKSYFALQLPK-GWWVFG 313 (795)
Q Consensus 236 ~~~~~i~~~~p~~p~~~~~l~~~~~P~ifAIPGNHDwyDGL~~F-~r~F~~~~~~gGw~~pQ~~SYfAl~Lp~-~wwLlg 313 (795)
+ ....| +++++||||++.+.... .+.+. ..|+..-.+. +..++... ...+.|
T Consensus 60 -------------------l-~~~~~-v~~v~GNHD~~~~~~~~~~~~l~----~~~v~~L~~~-~~~~~~~~~~i~i~G 113 (223)
T cd07385 60 -------------------L-KAPLG-VYAVLGNHDYYSGDEENWIEALE----SAGITVLRNE-SVEISVGGATIGIAG 113 (223)
T ss_pred -------------------c-CCCCC-EEEECCCcccccCchHHHHHHHH----HcCCEEeecC-cEEeccCCeEEEEEe
Confidence 1 01234 99999999998775543 22222 1234333332 33455433 256777
Q ss_pred EecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCCcce
Q 003788 314 LDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRH 393 (795)
Q Consensus 314 LDsql~~dID~~Q~~wf~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY~R~ 393 (795)
++.... +.+.+.+.++ ..++++..|+++|.|...... -..+++++||||+|..|..
T Consensus 114 ~~~~~~------~~~~~~~~~~-~~~~~~~~I~l~H~P~~~~~~-----------------~~~~~dl~l~GHtHggqi~ 169 (223)
T cd07385 114 VDDGLG------RRPDLEKALK-GLDEDDPNILLAHQPDTAEEA-----------------AAWGVDLQLSGHTHGGQIR 169 (223)
T ss_pred ccCccc------cCCCHHHHHh-CCCCCCCEEEEecCCChhHHh-----------------cccCccEEEeccCCCCEEe
Confidence 653321 1233444443 356678999999999855321 1348999999999977755
Q ss_pred eecCC------------CCC--cccceEEEecCCCcccccccccC
Q 003788 394 SYVPS------------DGP--VYVQHLLVNGCGGAFLHPTHVFS 424 (795)
Q Consensus 394 ~~~~~------------~G~--~~~~~lIVsGGGGAfLhPTH~~~ 424 (795)
.+... +|- ....+++||-|-|...-|.|...
T Consensus 170 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~Vs~G~G~~~~~~R~~~ 214 (223)
T cd07385 170 LPGIGPLVLSKLARPYDYGLYRKGGSQLYVSRGLGTWGPPLRLGC 214 (223)
T ss_pred ccccccccchhhcCcccceEEEECCEEEEEcCCccCCCCchhcCC
Confidence 43321 111 11336777777777666666544
No 22
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.07 E-value=7e-09 Score=117.71 Aligned_cols=126 Identities=12% Similarity=0.159 Sum_probs=83.3
Q ss_pred cceEEEE-CCCcEEEEEEecCC-----CCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCcccccccC-----Ccchh
Q 003788 298 KSYFALQ-LPKGWWVFGLDLAL-----HCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNN-----VSGKN 366 (795)
Q Consensus 298 ~SYfAl~-Lp~~wwLlgLDsql-----~~dID~~Q~~wf~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~-----~~~~~ 366 (795)
..||+++ .++ |.+|+||++. .+.++..|++||++.|++ .+++++||++|||.|..+.-..+ ....+
T Consensus 291 ~~YYSFd~~gg-vrfIvLDSt~~~G~~~G~L~eeQL~WLeqeLa~--a~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~n 367 (496)
T TIGR03767 291 TGYYTFDIAGG-VRGISMDTTNRAGGDEGSLGQTQFKWIKDTLRA--SSDTLFVLFSHHTSWSMVNELTDPVDPGEKRHL 367 (496)
T ss_pred CceEEEEeECC-EEEEEEeCCCcCCCcCCccCHHHHHHHHHHHhc--CCCCCEEEEECCCCccccccccccccccccccC
Confidence 4699999 565 9999999975 357899999999999974 45678999999999875421111 11112
Q ss_pred hHHHHHhhhCC-ceeEEEcCccCCCc-c-eeecCCCCCcccceEEEecCCCcccccccccCcc
Q 003788 367 VKHLICDYLKG-RCKLRIAGDMHHYM-R-HSYVPSDGPVYVQHLLVNGCGGAFLHPTHVFSNF 426 (795)
Q Consensus 367 l~~lie~~l~~-rV~L~LAGHiHhY~-R-~~~~~~~G~~~~~~lIVsGGGGAfLhPTH~~~~~ 426 (795)
-+++++-+-++ +|.++|+||+|.-. - +.+..+.+++.+-.=|+++.-=-|-|+-++++-.
T Consensus 368 ~~eLldLL~~ypnV~aVfsGHvH~n~i~~~~~~~~~~p~~gfweI~TaSlvdfPq~~Ri~Ei~ 430 (496)
T TIGR03767 368 GTELVSLLLEHPNVLAWVNGHTHSNKITAHRRVEGVGKDKGFWEINTASHIDFPQQGRIIELA 430 (496)
T ss_pred HHHHHHHHhcCCCceEEEECCcCCCccccccCCCCCCCcCCeEEEeccccccCCCCceEEEEE
Confidence 22333332244 79999999999432 2 2222222222333458877777788888887753
No 23
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.03 E-value=1.5e-09 Score=112.38 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHhhcCCCCeEEEEecCCCCcccc-------cccC----CcchhhHHHHHhhhCCceeEEEcCccCCCc
Q 003788 323 DVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDW-------YFNN----VSGKNVKHLICDYLKGRCKLRIAGDMHHYM 391 (795)
Q Consensus 323 D~~Q~~wf~~ll~~~v~~~d~VIL~tHeP~w~~~~-------~~~~----~~~~~l~~lie~~l~~rV~L~LAGHiHhY~ 391 (795)
...|++|+++.+++ ..++++||+||+|+..... .+.. .....+..+++++ +++++|+||+|.-.
T Consensus 148 ~~~~l~~l~~~l~~--~~~~~~ivvtH~pP~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~---~v~~~i~GH~H~~~ 222 (239)
T TIGR03729 148 TAIVLKQLKKQLNQ--LDNKQVIFVTHFVPHRDFIYVPMDHRRFDMFNAFLGSQHFGQLLVKY---EIKDVIFGHLHRRF 222 (239)
T ss_pred HHHHHHHHHHHHHh--cCCCCEEEEEcccchHHHhcCCCCCcchhhhhhccChHHHHHHHHHh---CCCEEEECCccCCC
Confidence 35789999999864 3457899999998743210 0110 0113344555554 89999999999743
No 24
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.02 E-value=8.6e-09 Score=107.29 Aligned_cols=174 Identities=14% Similarity=0.151 Sum_probs=101.3
Q ss_pred eEEEEEeecCCCCCChhHHHHHhcCcccccccCCCCcccCCccEEEEcccccCCCCChhhhhhccccchhhhcCCCCCCc
Q 003788 158 LWFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWYK 237 (795)
Q Consensus 158 ~wFd~VaDtGDG~~stY~VA~llAq~~L~~~~~~~~~~lPrgdfLvlgGDlvYp~gs~e~Y~~rf~~Pye~Al~~~~~~~ 237 (795)
..+..++|+=+ ...++.++++... ..++|++|++||++..++..++|..-+ +...
T Consensus 5 ~kIl~iSDiHg---n~~~le~l~~~~~-----------~~~~D~vv~~GDl~~~g~~~~~~~~~l-~~l~---------- 59 (224)
T cd07388 5 RYVLATSNPKG---DLEALEKLVGLAP-----------ETGADAIVLIGNLLPKAAKSEDYAAFF-RILG---------- 59 (224)
T ss_pred eEEEEEEecCC---CHHHHHHHHHHHh-----------hcCCCEEEECCCCCCCCCCHHHHHHHH-HHHH----------
Confidence 45788999953 2233444443211 135799999999999865566554322 2111
Q ss_pred ccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChhHHHH-Hhhcc-ccCCccccCCCcceEEEECCCcEEEEEEe
Q 003788 238 KDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMR-FICHK-SWLGGWFMPQKKSYFALQLPKGWWVFGLD 315 (795)
Q Consensus 238 ~~~i~~~~p~~p~~~~~l~~~~~P~ifAIPGNHDwyDGL~~F~r-~F~~~-~~~gGw~~pQ~~SYfAl~Lp~~wwLlgLD 315 (795)
....| +++||||||-- +..+++ .+-.. ..........+ + ++...+..|+|+|
T Consensus 60 -------------------~l~~p-v~~V~GNhD~~--v~~~l~~~~~~~~~~p~~~~lh~~--~--~~~~g~~~~~GlG 113 (224)
T cd07388 60 -------------------EAHLP-TFYVPGPQDAP--LWEYLREAYNAELVHPEIRNVHET--F--AFWRGPYLVAGVG 113 (224)
T ss_pred -------------------hcCCc-eEEEcCCCChH--HHHHHHHHhcccccCccceecCCC--e--EEecCCeEEEEec
Confidence 12335 99999999952 334433 22110 01112333222 2 3443446899998
Q ss_pred cCCCC--CCCHHHH----HHHHH----HHHhhcCCCCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcC
Q 003788 316 LALHC--DIDVYQF----KFFAE----LVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAG 385 (795)
Q Consensus 316 sql~~--dID~~Q~----~wf~~----ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAG 385 (795)
-.+.. ..+..|. +|+.+ .+.+ . ...+.||++|+|++-.+..| .....++.+|+++ +.++.++|
T Consensus 114 Gs~~~~~e~sE~e~~~~~~~~~~~~l~~~~~-~-~~~~~VLv~H~PP~g~g~~h--~GS~alr~~I~~~---~P~l~i~G 186 (224)
T cd07388 114 GEIADEGEPEEHEALRYPAWVAEYRLKALWE-L-KDYRKVFLFHTPPYHKGLNE--QGSHEVAHLIKTH---NPLVVLVG 186 (224)
T ss_pred CCcCCCCCcCHHHHhhhhhhHHHHHHHHHHh-C-CCCCeEEEECCCCCCCCCCc--cCHHHHHHHHHHh---CCCEEEEc
Confidence 54422 3345552 34322 3322 2 46799999999999874322 3446677788887 89999999
Q ss_pred ccCC
Q 003788 386 DMHH 389 (795)
Q Consensus 386 HiHh 389 (795)
|+||
T Consensus 187 Hih~ 190 (224)
T cd07388 187 GKGQ 190 (224)
T ss_pred CCce
Confidence 9994
No 25
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=98.82 E-value=1.4e-08 Score=96.14 Aligned_cols=50 Identities=12% Similarity=-0.027 Sum_probs=31.3
Q ss_pred EEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCCcceee
Q 003788 345 IIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSY 395 (795)
Q Consensus 345 IL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY~R~~~ 395 (795)
|+++|||.+........... +.+.+++-+.+.+++++|+||+|.......
T Consensus 81 iv~~Hhp~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~l~GH~H~~~~~~~ 130 (144)
T cd07400 81 IVVLHHPLVPPPGSGRERLL-DAGDALKLLAEAGVDLVLHGHKHVPYVGNI 130 (144)
T ss_pred EEEecCCCCCCCccccccCC-CHHHHHHHHHHcCCCEEEECCCCCcCeeec
Confidence 99999999887532211111 222333333356999999999998765543
No 26
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=98.78 E-value=2.6e-08 Score=96.96 Aligned_cols=52 Identities=15% Similarity=0.087 Sum_probs=31.5
Q ss_pred CeEEEEecCCCCcccccccCCc-ch--hhHHHHHhhh-CCceeEEEcCccCCCcce
Q 003788 342 DSVIIMTHEPNWLLDWYFNNVS-GK--NVKHLICDYL-KGRCKLRIAGDMHHYMRH 393 (795)
Q Consensus 342 d~VIL~tHeP~w~~~~~~~~~~-~~--~l~~lie~~l-~~rV~L~LAGHiHhY~R~ 393 (795)
+++||++|||+...+....+.. .. .....+.+.+ +.+|+++++||+|.....
T Consensus 97 ~~~vv~~HhpP~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~i~GH~H~~~~~ 152 (166)
T cd07404 97 GKTVVVTHHAPSPLSLAPQYGDSLVNAAFAVDLDDLILADPIDLWIHGHTHFNFDY 152 (166)
T ss_pred CCEEEEeCCCCCccccCccccCCCcchhhhhccHhHHhhcCCCEEEECCccccceE
Confidence 6899999999987643221111 01 1111233333 468999999999976433
No 27
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=98.73 E-value=2.9e-08 Score=99.50 Aligned_cols=122 Identities=16% Similarity=0.102 Sum_probs=64.0
Q ss_pred cEEEeCCCCCCCCChhHHHHHhhccccCCccccC----CCcceEEEEC-CCcEEEEEEecCCCCCCCHHHHHHHHHHHHh
Q 003788 262 QCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMP----QKKSYFALQL-PKGWWVFGLDLALHCDIDVYQFKFFAELVKE 336 (795)
Q Consensus 262 ~ifAIPGNHDwyDGL~~F~r~F~~~~~~gGw~~p----Q~~SYfAl~L-p~~wwLlgLDsql~~dID~~Q~~wf~~ll~~ 336 (795)
++++|+||||.+.+......... ..++... .......+.. ..+..|+|++....... ..+.+..++.. .
T Consensus 78 ~v~~~~GNHD~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~i~g~~~~~~~~~-~~~~~~~~~~~-~ 151 (223)
T cd00840 78 PVFIIAGNHDSPSRLGALSPLLA----LSGLHLVGVEEDVLTPLLLPKGGTGVAIYGLPYLRRSRL-RDLLADAELRP-R 151 (223)
T ss_pred CEEEecCCCCCccccccccchHh----hCcEEEEcccCcceeEEEeccCCeEEEEEECCCCCHHHH-HHHHHHHHHHh-h
Confidence 49999999999876543322211 1122211 0111122222 23477888875422211 12222223333 2
Q ss_pred hcCCCCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCCcce
Q 003788 337 QVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRH 393 (795)
Q Consensus 337 ~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY~R~ 393 (795)
+..+++..|+++|.|.......... . ....++.+...+++++++||+|..+..
T Consensus 152 ~~~~~~~~Il~~H~~~~~~~~~~~~--~--~~~~~~~~~~~~~d~v~~GH~H~~~~~ 204 (223)
T cd00840 152 PLDPDDFNILLLHGGVAGAGPSDSE--R--APFVPEALLPAGFDYVALGHIHRPQII 204 (223)
T ss_pred ccCCCCcEEEEEeeeeecCCCCccc--c--cccCcHhhcCcCCCEEECCCcccCeee
Confidence 3566789999999997544321110 0 111223333568999999999986543
No 28
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.69 E-value=8.4e-08 Score=85.91 Aligned_cols=50 Identities=22% Similarity=0.242 Sum_probs=33.4
Q ss_pred EEEecCCCCcccccccCCcchhhHHHHHhhh-CCceeEEEcCccCCCcceee
Q 003788 345 IIMTHEPNWLLDWYFNNVSGKNVKHLICDYL-KGRCKLRIAGDMHHYMRHSY 395 (795)
Q Consensus 345 IL~tHeP~w~~~~~~~~~~~~~l~~lie~~l-~~rV~L~LAGHiHhY~R~~~ 395 (795)
|+++|.|.+.......... ......+.+.+ ..++++.++||+|.++++..
T Consensus 70 i~~~H~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~~ 120 (131)
T cd00838 70 ILLTHGPPYDPLDELSPDE-DPGSEALLELLEKYGVDLVLSGHTHVYERREP 120 (131)
T ss_pred EEEeccCCCCCchhhcccc-hhhHHHHHHHHHHhCCCEEEeCCeeccccccC
Confidence 9999999998865332211 11122223333 56899999999999988863
No 29
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=98.66 E-value=2.8e-07 Score=104.23 Aligned_cols=86 Identities=16% Similarity=0.142 Sum_probs=56.6
Q ss_pred eEEEECCCcE--EEEEEecCC-----------CCCCCHHHHHHHHHHHHhhcC-CCCeEEEEecCCCCcc-cccc---c-
Q 003788 300 YFALQLPKGW--WVFGLDLAL-----------HCDIDVYQFKFFAELVKEQVG-ERDSVIIMTHEPNWLL-DWYF---N- 360 (795)
Q Consensus 300 YfAl~Lp~~w--wLlgLDsql-----------~~dID~~Q~~wf~~ll~~~v~-~~d~VIL~tHeP~w~~-~~~~---~- 360 (795)
||+++.-.+| .+|+||+-. ++.+|..|++||++.|++ .+ .+..||++.|+|..+. .... .
T Consensus 294 yYsFd~~g~vplrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~-a~a~~p~VVV~hHpPi~t~gi~~md~w~~ 372 (492)
T TIGR03768 294 CYSFVPKSDVPLKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELAR-GQADGQLMIIAAHIPIAVSPIGSEMEWWL 372 (492)
T ss_pred eeEEecCCCcceEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHh-CcCCCceEEEEeCCCcccCCccchhhhcc
Confidence 9999953335 999999763 345899999999999974 44 4456888888888752 2110 0
Q ss_pred -C-------Ccc---hhhHHHHHhhhCCceeEEEcCccC
Q 003788 361 -N-------VSG---KNVKHLICDYLKGRCKLRIAGDMH 388 (795)
Q Consensus 361 -~-------~~~---~~l~~lie~~l~~rV~L~LAGHiH 388 (795)
. +.. ..+..+|+++ .+|.++||||+|
T Consensus 373 ~~~~~~~~L~n~~~~~eLlaLL~~h--PnVla~LsGHvH 409 (492)
T TIGR03768 373 GAADANPDLQNAVSLTGLVTTLQKY--PNLLMWIAGHRH 409 (492)
T ss_pred ccccccccccccccHHHHHHHHhcC--CCeEEEEcCCcc
Confidence 0 001 1222333332 379999999999
No 30
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=98.64 E-value=1.8e-07 Score=100.74 Aligned_cols=209 Identities=16% Similarity=0.113 Sum_probs=107.1
Q ss_pred CCCCceEEEEEeecCCCCCChhHHHHHhcCcccccccCCCCcccCCccEEEEcccccCC--CCChhhhhhccccchhhhc
Q 003788 153 SEKEDLWFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYP--NPSAFTYERRLFRPFEYAL 230 (795)
Q Consensus 153 ~~~~~~wFd~VaDtGDG~~stY~VA~llAq~~L~~~~~~~~~~lPrgdfLvlgGDlvYp--~gs~e~Y~~rf~~Pye~Al 230 (795)
....++.+..++|+=-.....-..+-+.+-.+ ..+|+++++||++.- ....+...+.+ ++.+
T Consensus 40 ~~~~~~~iv~lSDlH~~~~~~~~~~~~~~i~~------------~~~DlivltGD~~~~~~~~~~~~~~~~L-~~L~--- 103 (284)
T COG1408 40 ASLQGLKIVQLSDLHSLPFREEKLALLIAIAN------------ELPDLIVLTGDYVDGDRPPGVAALALFL-AKLK--- 103 (284)
T ss_pred cccCCeEEEEeehhhhchhhHHHHHHHHHHHh------------cCCCEEEEEeeeecCCCCCCHHHHHHHH-Hhhh---
Confidence 44577889999999422222222333332221 123999999997773 12222222211 2222
Q ss_pred CCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChhHH-HHHhhccc--c--CCccccCCCc-ceEEEE
Q 003788 231 QPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTF-MRFICHKS--W--LGGWFMPQKK-SYFALQ 304 (795)
Q Consensus 231 ~~~~~~~~~~i~~~~p~~p~~~~~l~~~~~P~ifAIPGNHDwyDGL~~F-~r~F~~~~--~--~gGw~~pQ~~-SYfAl~ 304 (795)
+...+|||.|||||+...... ...+.... . -.+....+.. .++ -.
T Consensus 104 ----------------------------~~~gv~av~GNHd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~ 154 (284)
T COG1408 104 ----------------------------APLGVFAVLGNHDYGVDRSNVYIGDLLEELGRVVLRNEIAVIDLLALRI-EV 154 (284)
T ss_pred ----------------------------ccCCEEEEecccccccccccchhhhhhhhcceeeecccchhcccccccc-cc
Confidence 112399999999999876553 22222111 0 0001111110 010 11
Q ss_pred CCCcEEEEEEecCCCCCCCHHHHHH---HHHHHHhhcCCCCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeE
Q 003788 305 LPKGWWVFGLDLALHCDIDVYQFKF---FAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKL 381 (795)
Q Consensus 305 Lp~~wwLlgLDsql~~dID~~Q~~w---f~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L 381 (795)
....-|..++|.+..... ..+.++ ..+.+ ++.+++...|+++|+|...... -.+.++|
T Consensus 155 ~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~IlL~H~P~~~~~~-----------------~~~~~dL 215 (284)
T COG1408 155 GGLDLYLAGVEDILAGLP-LAPFTIGLDIAEAL-KQLDEDLPGILLSHEPDIILQL-----------------RLYGVDL 215 (284)
T ss_pred cccccccccCchHHhhCc-ccccccccchhhhh-ccccccccceEeccCCceehhh-----------------ccCcceE
Confidence 111245666655543322 000000 22223 3567788999999999977541 1347999
Q ss_pred EEcCccCCCcceeecCC------------CCC--cccceEEEecCCCcccccccccCc
Q 003788 382 RIAGDMHHYMRHSYVPS------------DGP--VYVQHLLVNGCGGAFLHPTHVFSN 425 (795)
Q Consensus 382 ~LAGHiHhY~R~~~~~~------------~G~--~~~~~lIVsGGGGAfLhPTH~~~~ 425 (795)
+||||+|.=|-..|..+ .|. +.+.+++||.|-|..--|.|....
T Consensus 216 vLSGHTHGGQi~~p~~~~l~~~~~~~~~~~g~~~~~~~~lyVSrGlG~~~~p~R~~~~ 273 (284)
T COG1408 216 VLSGHTHGGQIRLPLWGPLVTNALSGRYRAGGLRQFGAQLYVSRGLGTTGPPIRLGCP 273 (284)
T ss_pred EEeccccCCeEEeecccccccccccccccccceecCCceEEEeCCcCCCCCCcccCCC
Confidence 99999994333322110 011 112368999999987677777654
No 31
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.52 E-value=7.4e-07 Score=84.36 Aligned_cols=48 Identities=23% Similarity=0.285 Sum_probs=31.5
Q ss_pred CCeEEEEecCCCCcccccccC---CcchhhHHHHHhhhCCceeEEEcCccCCCc
Q 003788 341 RDSVIIMTHEPNWLLDWYFNN---VSGKNVKHLICDYLKGRCKLRIAGDMHHYM 391 (795)
Q Consensus 341 ~d~VIL~tHeP~w~~~~~~~~---~~~~~l~~lie~~l~~rV~L~LAGHiHhY~ 391 (795)
++..|+++|.|.+....+... .....+..++++. ++++.++||+|...
T Consensus 67 ~~~~ilv~H~~p~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~i~GH~H~~~ 117 (135)
T cd07379 67 EDTDILVTHGPPYGHLDLVSSGQRVGCEELLNRVQRV---RPKLHVFGHIHEGY 117 (135)
T ss_pred CCCEEEEECCCCCcCccccccCcccCCHHHHHHHHHH---CCcEEEEcCcCCcC
Confidence 467899999999776533211 1123344455544 78999999999753
No 32
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=98.12 E-value=8e-06 Score=83.81 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=30.6
Q ss_pred EEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCCcceeec
Q 003788 345 IIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYV 396 (795)
Q Consensus 345 IL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY~R~~~~ 396 (795)
|+++|-|.+.... .-..+.+.+ .++.+.+|||.|.+..++..
T Consensus 112 i~lsH~P~~~~~~-------~~~~~~~~~---~~p~~Ifs~H~H~s~~~~~~ 153 (195)
T cd08166 112 IMLSHVPLLAEGG-------QALKHVVTD---LDPDLIFSAHRHKSSIFMYD 153 (195)
T ss_pred eeeeccccccccc-------HHHHHHHHh---cCceEEEEcCccceeeEEee
Confidence 9999999988642 122233343 48999999999998887644
No 33
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=98.10 E-value=8.5e-06 Score=81.35 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=26.4
Q ss_pred EEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCCcceeecC
Q 003788 345 IIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVP 397 (795)
Q Consensus 345 IL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY~R~~~~~ 397 (795)
|+++|+|.+. +++ +.+++++||||+|.+.+.....
T Consensus 119 i~l~H~p~~~---------------~~~---~~~~~~~lsGH~H~~~~~~~~~ 153 (171)
T cd07384 119 ILLTHIPLYR---------------LLD---TIKPVLILSGHDHDQCEVVHSS 153 (171)
T ss_pred eeEECCccHH---------------HHh---ccCceEEEeCcccCCeEEEecC
Confidence 9999999853 111 3478899999999997776553
No 34
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=97.99 E-value=4.2e-05 Score=86.75 Aligned_cols=92 Identities=15% Similarity=0.131 Sum_probs=46.8
Q ss_pred CcceEEEECCCcEEEEEEecCCCCC---------------------CCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCcc
Q 003788 297 KKSYFALQLPKGWWVFGLDLALHCD---------------------IDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLL 355 (795)
Q Consensus 297 ~~SYfAl~Lp~~wwLlgLDsql~~d---------------------ID~~Q~~wf~~ll~~~v~~~d~VIL~tHeP~w~~ 355 (795)
.+.|+.++.++..-|+.||+-..-+ +...|++||++.+++ ....++||++.-|.-..
T Consensus 252 ~~~y~~~~~G~~~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~~mLG~~Q~~wL~~~L~~--s~a~~kvi~s~v~~~~~ 329 (453)
T PF09423_consen 252 GRIYRSFRYGDLVEFFMLDTRSYRSPPPCDGPGDTCPAADDPSRTMLGEEQWDWLEDWLAS--SQATWKVIGSSVPFSPL 329 (453)
T ss_dssp ----EEEEETTTEEEEE--SSSS----CCCSSEE--HHHH-TT--SS-HHHHHHHHHHHHH----SSEEEEE-SS--S--
T ss_pred CceEEEEecCCceeEEEEechhccccccccccccccccccCCccCcCCHHHHHHHHHHHhc--CCCcEEEEEeCCceecc
Confidence 4469999999877899999964211 346899999998874 33688888877765332
Q ss_pred cccc-------cCC--cc-hhhH-HHHHhhhCCce--eEEEcCccCCC
Q 003788 356 DWYF-------NNV--SG-KNVK-HLICDYLKGRC--KLRIAGDMHHY 390 (795)
Q Consensus 356 ~~~~-------~~~--~~-~~l~-~lie~~l~~rV--~L~LAGHiHhY 390 (795)
.... +.+ .+ ...+ .|++.+-..++ -++||||+|.-
T Consensus 330 ~~~~~~~~~~~~~d~W~g~~~er~~Ll~~l~~~~~~~vV~LSGDvH~~ 377 (453)
T PF09423_consen 330 NFPDAAEGLPFNMDSWDGYPAERQRLLDFLRESGIRNVVFLSGDVHAS 377 (453)
T ss_dssp -SS-SS-S--EETTSGGGSHHHHHHHHHHHHHTT---EEEEE-SSSSE
T ss_pred cccccccccccCCCchhhCHHHHHHHHHHHHhhCCCCEEEEecCcchh
Confidence 2110 001 11 1122 23333323344 48999999954
No 35
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=97.78 E-value=0.00034 Score=74.00 Aligned_cols=58 Identities=19% Similarity=0.218 Sum_probs=37.3
Q ss_pred hcCCCCeEEEEecCCCCcccccccC-----------Ccc-hhhHHHHHhhh-CCceeEEEcCccCCCccee
Q 003788 337 QVGERDSVIIMTHEPNWLLDWYFNN-----------VSG-KNVKHLICDYL-KGRCKLRIAGDMHHYMRHS 394 (795)
Q Consensus 337 ~v~~~d~VIL~tHeP~w~~~~~~~~-----------~~~-~~l~~lie~~l-~~rV~L~LAGHiHhY~R~~ 394 (795)
.+.++++.||++|.|..-.+...++ .-| ..+...|.++- +.+++|++.||+||=-|+.
T Consensus 142 ~~~~~~~~VliaH~~~~G~g~~~~~~cg~d~~~~~~~~G~~~l~~ai~~~~~~~~~~l~~fGH~H~~l~~~ 212 (238)
T cd07397 142 KAPPDLPLILLAHNGPSGLGSDAEDPCGRDWKPPGGDWGDPDLALAISQIQQGRQVPLVVFGHMHHRLRRG 212 (238)
T ss_pred hcCCCCCeEEEeCcCCcCCCcccccccccccCCcCCCCCCHHHHHHHHHHhccCCCCEEEeCCccCccccc
Confidence 4677889999999998665421111 012 23444455443 4568999999999976664
No 36
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=97.73 E-value=7.2e-05 Score=73.61 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=23.8
Q ss_pred EEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCCcceeec
Q 003788 345 IIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYV 396 (795)
Q Consensus 345 IL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY~R~~~~ 396 (795)
|++.|+|... .+.+ .++++.||||+|...+....
T Consensus 107 ~~l~H~p~~~---------------~~~~---~~~~~~l~GH~H~~~~~~~~ 140 (156)
T cd08165 107 ILLQHFPLYR---------------LLQW---LKPRLVLSGHTHSFCEVTHP 140 (156)
T ss_pred eeeeCChHHH---------------HHHh---hCCCEEEEcccCCCceeEEE
Confidence 8999999732 1122 36779999999996666533
No 37
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=97.66 E-value=0.0015 Score=68.57 Aligned_cols=177 Identities=21% Similarity=0.244 Sum_probs=93.4
Q ss_pred ceEEEEEeecCCCCCChhHHHHHhcCcccccccCCCCcccCCccEEEEcccccCCC-CChhhhhhccccchhhhcCCCCC
Q 003788 157 DLWFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPN-PSAFTYERRLFRPFEYALQPPPW 235 (795)
Q Consensus 157 ~~wFd~VaDtGDG~~stY~VA~llAq~~L~~~~~~~~~~lPrgdfLvlgGDlvYp~-gs~e~Y~~rf~~Pye~Al~~~~~ 235 (795)
.+.+.+++|+=...++.-++....+. -++|+|+++||++|-. +..+.-..... .++
T Consensus 3 ~mkil~vtDlHg~~~~~~k~~~~~~~--------------~~~D~lviaGDlt~~~~~~~~~~~~~~~--~e~------- 59 (226)
T COG2129 3 KMKILAVTDLHGSEDSLKKLLNAAAD--------------IRADLLVIAGDLTYFHFGPKEVAEELNK--LEA------- 59 (226)
T ss_pred cceEEEEeccccchHHHHHHHHHHhh--------------ccCCEEEEecceehhhcCchHHHHhhhH--HHH-------
Confidence 45678889985554444444433322 2579999999999332 22211111110 111
Q ss_pred CcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChhHHHHHhhccccCCccccCCCcceEEEECCCcEEEEEEe
Q 003788 236 YKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLD 315 (795)
Q Consensus 236 ~~~~~i~~~~p~~p~~~~~l~~~~~P~ifAIPGNHDwyDGL~~F~r~F~~~~~~gGw~~pQ~~SYfAl~Lp~~wwLlgLD 315 (795)
++....| ++|+|||=|-- .-.+.+.. .|-.+..+ ++++.. .-+.|+.
T Consensus 60 -------------------l~~~~~~-v~avpGNcD~~----~v~~~l~~----~~~~v~~~----v~~i~~-~~~~G~G 106 (226)
T COG2129 60 -------------------LKELGIP-VLAVPGNCDPP----EVIDVLKN----AGVNVHGR----VVEIGG-YGFVGFG 106 (226)
T ss_pred -------------------HHhcCCe-EEEEcCCCChH----HHHHHHHh----cccccccc----eEEecC-cEEEEec
Confidence 2223445 99999996642 22222211 11222222 456654 3455532
Q ss_pred -cCCCC-----CC-CHHHHHHHHHHHHhhcCCCCeEEEEecCCCCcccccc----cCCcchhhHHHHHhhhCCceeEEEc
Q 003788 316 -LALHC-----DI-DVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYF----NNVSGKNVKHLICDYLKGRCKLRIA 384 (795)
Q Consensus 316 -sql~~-----dI-D~~Q~~wf~~ll~~~v~~~d~VIL~tHeP~w~~~~~~----~~~~~~~l~~lie~~l~~rV~L~LA 384 (795)
++... .. ++.=+..++..+++..+ ...|+++|.|++....-. .+.....++.+++++ +..+.++
T Consensus 107 gsn~tp~nt~~e~~E~~I~s~l~~~v~~~~~--~~~Il~~HaPP~gt~~d~~~g~~hvGS~~vr~~ieef---qP~l~i~ 181 (226)
T COG2129 107 GSNPTPFNTPREFSEDEIYSKLKSLVKKADN--PVNILLTHAPPYGTLLDTPSGYVHVGSKAVRKLIEEF---QPLLGLH 181 (226)
T ss_pred ccCCCCCCCccccCHHHHHHHHHHHHhcccC--cceEEEecCCCCCccccCCCCccccchHHHHHHHHHh---CCceEEE
Confidence 22111 12 22335566666643111 122999999999764321 111235577888887 7899999
Q ss_pred CccCCCccee
Q 003788 385 GDMHHYMRHS 394 (795)
Q Consensus 385 GHiHhY~R~~ 394 (795)
||+|-+.-..
T Consensus 182 GHIHEs~G~d 191 (226)
T COG2129 182 GHIHESRGID 191 (226)
T ss_pred eeeccccccc
Confidence 9999854443
No 38
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.64 E-value=0.00024 Score=67.74 Aligned_cols=49 Identities=22% Similarity=0.066 Sum_probs=28.6
Q ss_pred eEEEEecCCCCcccccccC--CcchhhHHHHHhhhCCceeEEEcCccCCCccee
Q 003788 343 SVIIMTHEPNWLLDWYFNN--VSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHS 394 (795)
Q Consensus 343 ~VIL~tHeP~w~~~~~~~~--~~~~~l~~lie~~l~~rV~L~LAGHiHhY~R~~ 394 (795)
..|+++|+|.+-....... ...+.+..+++ +.+++++|+||+|......
T Consensus 57 ~~Ilv~H~pp~~~~~~~~~~~~g~~~l~~~l~---~~~~~~vl~GH~H~~~~~~ 107 (129)
T cd07403 57 VDILLTHAPPAGIGDGEDFAHRGFEAFLDFID---RFRPKLFIHGHTHLNYGYQ 107 (129)
T ss_pred cCEEEECCCCCcCcCcccccccCHHHHHHHHH---HHCCcEEEEcCcCCCcCcc
Confidence 5689999998754321100 11222223333 4479999999999544443
No 39
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=97.59 E-value=0.00013 Score=74.88 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=24.2
Q ss_pred EEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCCccee
Q 003788 345 IIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHS 394 (795)
Q Consensus 345 IL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY~R~~ 394 (795)
|+++|+|.+... .+.+++++||||+|.=++..
T Consensus 129 ilL~H~P~~~~~------------------~~~~~dl~lSGHtHgGqi~~ 160 (193)
T cd08164 129 ILLTHVPLYKIF------------------LEGKPGLILTGHDHEGCDYQ 160 (193)
T ss_pred EEEEcccceecc------------------ccCCCCEEEeCccCCCeEEE
Confidence 999999987621 02378999999999865554
No 40
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=97.54 E-value=0.00022 Score=67.52 Aligned_cols=60 Identities=15% Similarity=0.240 Sum_probs=36.9
Q ss_pred CCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCCcceeecCCCCCcccceEEEecCCCc
Q 003788 341 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGA 415 (795)
Q Consensus 341 ~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY~R~~~~~~~G~~~~~~lIVsGGGGA 415 (795)
+...|+++|.+.+.... ....+. +.+...+++++++||+|..+..... +..+|..|+-+-
T Consensus 80 ~~~~i~~~H~~~~~~~~-----~~~~~~---~~~~~~~~~~~~~GH~H~~~~~~~~-------~~~~~~~Gs~~~ 139 (156)
T PF12850_consen 80 DGFKILLSHGHPYDVQW-----DPAELR---EILSRENVDLVLHGHTHRPQVFKIG-------GIHVINPGSIGG 139 (156)
T ss_dssp TTEEEEEESSTSSSSTT-----THHHHH---HHHHHTTSSEEEESSSSSEEEEEET-------TEEEEEE-GSSS
T ss_pred cCCeEEEECCCCccccc-----Chhhhh---hhhcccCCCEEEcCCcccceEEEEC-------CEEEEECCcCCC
Confidence 47788999988877431 111222 2222568999999999986655411 236677776543
No 41
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=97.52 E-value=0.00043 Score=72.75 Aligned_cols=161 Identities=21% Similarity=0.331 Sum_probs=76.6
Q ss_pred CccEEEEcccccCCCCChhhhhhccc---cchhhhcCCCCCCcccccccCCCCCCC----------CC-cccccCCCCcE
Q 003788 198 RGDVLLIGGDLAYPNPSAFTYERRLF---RPFEYALQPPPWYKKDHVAVNKPEVPS----------GV-PELKQYDGPQC 263 (795)
Q Consensus 198 rgdfLvlgGDlvYp~gs~e~Y~~rf~---~Pye~Al~~~~~~~~~~i~~~~p~~p~----------~~-~~l~~~~~P~i 263 (795)
++|.|+++||+.=+.+...+|++--. .| +|++.-+ .. ..|..+ ++++
T Consensus 32 ~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p------------------~k~~i~~e~~~~~e~~~~ff~~L~~~-~~p~ 92 (255)
T PF14582_consen 32 GPDAVVFVGDLLKAEARSDEYERAQEEQREP------------------DKSEINEEECYDSEALDKFFRILGEL-GVPV 92 (255)
T ss_dssp T-SEEEEES-SS-TCHHHHHHHHHHHTT----------------------THHHHHHHHHHHHHHHHHHHHHHCC--SEE
T ss_pred CCCEEEEeccccccchhhhHHHHHhhhccCc------------------chhhhhhhhhhhHHHHHHHHHHHHhc-CCcE
Confidence 57999999999888777778872100 01 0000000 00 012223 3559
Q ss_pred EEeCCCCCCCCChhHHHHHhhcccc-CCccccCCCcceEEEECCCcEEEEEEecCCCCC--CC-------HHHHHHHHHH
Q 003788 264 YIIPGNHDWFDGLNTFMRFICHKSW-LGGWFMPQKKSYFALQLPKGWWVFGLDLALHCD--ID-------VYQFKFFAEL 333 (795)
Q Consensus 264 fAIPGNHDwyDGL~~F~r~F~~~~~-~gGw~~pQ~~SYfAl~Lp~~wwLlgLDsql~~d--ID-------~~Q~~wf~~l 333 (795)
+.||||||=+ +..|+|.-..... ....++-++ |+|-.+-+ +-++|+.-....+ .+ ..-.+|-.+.
T Consensus 93 ~~vPG~~Dap--~~~~lr~a~~~e~v~p~~~~vH~-sf~~~~g~--y~v~G~GGeI~~~~~~~~~~LrYP~weaey~lk~ 167 (255)
T PF14582_consen 93 FVVPGNMDAP--ERFFLREAYNAEIVTPHIHNVHE-SFFFWKGE--YLVAGMGGEITDDQREEEFKLRYPAWEAEYSLKF 167 (255)
T ss_dssp EEE--TTS-S--HHHHHHHHHHCCCC-TTEEE-CT-CEEEETTT--EEEEEE-SEEESSS-BCSSS-EEEHHHHHHHHGG
T ss_pred EEecCCCCch--HHHHHHHHhccceeccceeeeee-eecccCCc--EEEEecCccccCCCccccccccchHHHHHHHHHH
Confidence 9999999964 2345554433111 222334444 44333323 5688886432211 11 0123344444
Q ss_pred HHhhcCCCCeEEEEecCCC-CcccccccCCcchhhHHHHHhhhCCceeEEEcCccCC
Q 003788 334 VKEQVGERDSVIIMTHEPN-WLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHH 389 (795)
Q Consensus 334 l~~~v~~~d~VIL~tHeP~-w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHh 389 (795)
+.+ +. +.+.|++.|-|+ .-.+.. +.....+.++|+++ +.+++|+||+|-
T Consensus 168 l~e-lk-~~r~IlLfhtpPd~~kg~~--h~GS~~V~dlIk~~---~P~ivl~Ghihe 217 (255)
T PF14582_consen 168 LRE-LK-DYRKILLFHTPPDLHKGLI--HVGSAAVRDLIKTY---NPDIVLCGHIHE 217 (255)
T ss_dssp GGG-CT-SSEEEEEESS-BTBCTCTB--TTSBHHHHHHHHHH-----SEEEE-SSS-
T ss_pred HHh-cc-cccEEEEEecCCccCCCcc--cccHHHHHHHHHhc---CCcEEEeccccc
Confidence 433 33 458999999999 222211 12346688899998 889999999995
No 42
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=97.51 E-value=0.0036 Score=65.00 Aligned_cols=117 Identities=17% Similarity=0.156 Sum_probs=61.3
Q ss_pred EEEeCCCCCCCCChhHHHHHhhccc--cCC-ccc-------cCCCcceEEEECCC-cEEEEEEecCCCCCC---------
Q 003788 263 CYIIPGNHDWFDGLNTFMRFICHKS--WLG-GWF-------MPQKKSYFALQLPK-GWWVFGLDLALHCDI--------- 322 (795)
Q Consensus 263 ifAIPGNHDwyDGL~~F~r~F~~~~--~~g-Gw~-------~pQ~~SYfAl~Lp~-~wwLlgLDsql~~dI--------- 322 (795)
-++++||||+.-|.+.+...+-+-. +++ +.. .+.-..|-.++... ..-++|+.+......
T Consensus 72 d~~~~GNHe~d~g~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~~~i~~~~g~kIgiiG~~~~~~~~~~~~~~~~~~ 151 (252)
T cd00845 72 DAVTIGNHEFDYGLDALAELYKDANFPVLSANLYDKDTGTGPPWAKPYKIIEVDGVKIGVIGLTTPDTPTYTPLGWIIGL 151 (252)
T ss_pred CEEeeccccccccHHHHHHHHHhCCCCEEEEeeeccCCCCCCCCcCCeEEEEECCEEEEEEEeccccceeecCCCcccCc
Confidence 4456799998667666655543221 111 110 01112354555542 255777765432111
Q ss_pred C-HHHHHHHHHHHHhhcCCCCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCCcce
Q 003788 323 D-VYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRH 393 (795)
Q Consensus 323 D-~~Q~~wf~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY~R~ 393 (795)
+ ....+-+++..++..++.|-||+++|-|.-.. ..+.++. ..++++|+||.|.....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~D~vIvl~H~g~~~~------------~~la~~~--~giDlvlggH~H~~~~~ 209 (252)
T cd00845 152 PFEDLAEAVAVAEELLAEGADVIILLSHLGLDDD------------EELAEEV--PGIDVILGGHTHHLLEE 209 (252)
T ss_pred eecCHHHHHHHHHHHHhCCCCEEEEEeccCccch------------HHHHhcC--CCccEEEcCCcCcccCC
Confidence 0 11122233322233456799999999887431 1222332 47999999999987653
No 43
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=97.45 E-value=0.00057 Score=65.72 Aligned_cols=43 Identities=16% Similarity=0.080 Sum_probs=26.2
Q ss_pred CCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCCcc
Q 003788 341 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMR 392 (795)
Q Consensus 341 ~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY~R 392 (795)
+...|+++|-+.+..... ... ..+++ ..+++++++||+|....
T Consensus 74 ~g~~i~v~Hg~~~~~~~~-----~~~-~~~~~---~~~~d~vi~GHtH~~~~ 116 (155)
T cd00841 74 GGKRIFLTHGHLYGVKNG-----LDR-LYLAK---EGGADVVLYGHTHIPVI 116 (155)
T ss_pred CCEEEEEECCcccccccc-----hhh-hhhhh---hcCCCEEEECcccCCcc
Confidence 356788999887654311 011 11122 34789999999996543
No 44
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=97.45 E-value=0.00058 Score=71.22 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=14.2
Q ss_pred CCceeEEEcCccCCCcce
Q 003788 376 KGRCKLRIAGDMHHYMRH 393 (795)
Q Consensus 376 ~~rV~L~LAGHiHhY~R~ 393 (795)
++++++++.||+|.-..+
T Consensus 185 ~~~~~~~i~GH~H~~~~~ 202 (241)
T PRK05340 185 KHGVDTLIHGHTHRPAIH 202 (241)
T ss_pred HhCCCEEEECcccCccee
Confidence 458999999999975444
No 45
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=97.44 E-value=0.0023 Score=65.34 Aligned_cols=49 Identities=22% Similarity=0.287 Sum_probs=37.6
Q ss_pred CCCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCCcceeec
Q 003788 340 ERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYV 396 (795)
Q Consensus 340 ~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY~R~~~~ 396 (795)
+.+.+|||+|-|+.+.+. +...+.+.+|+ +||+..|-||+|.-.|-.+.
T Consensus 157 ~~~~fivM~HYPP~s~~~-----t~~~~sevlee---~rv~~~lyGHlHgv~~p~~~ 205 (230)
T COG1768 157 GVSKFIVMTHYPPFSDDG-----TPGPFSEVLEE---GRVSKCLYGHLHGVPRPNIG 205 (230)
T ss_pred CcCeEEEEEecCCCCCCC-----CCcchHHHHhh---cceeeEEeeeccCCCCCCCC
Confidence 358999999999998763 33445566665 59999999999997765433
No 46
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=97.41 E-value=0.0034 Score=66.35 Aligned_cols=133 Identities=19% Similarity=0.138 Sum_probs=69.6
Q ss_pred EEEeCCCCCCCCChhHHHHHhhcc--ccCCc-c------c-cCCCcceEEEECCCc-EEEEEEecCCCC--------C--
Q 003788 263 CYIIPGNHDWFDGLNTFMRFICHK--SWLGG-W------F-MPQKKSYFALQLPKG-WWVFGLDLALHC--------D-- 321 (795)
Q Consensus 263 ifAIPGNHDwyDGL~~F~r~F~~~--~~~gG-w------~-~pQ~~SYfAl~Lp~~-wwLlgLDsql~~--------d-- 321 (795)
-++++||||+.-|.+.+.+.+.+- .+++. . . .++-..|-.++...- .=++|+.+.... .
T Consensus 73 d~~~~GNHefd~g~~~l~~~~~~~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~g~kIgviG~~~~~~~~~~~~~~~~~~ 152 (257)
T cd07406 73 DLACFGNHEFDFGEDQLQKRLGESKFPWLSSNVFDATGGGPLPNGKESAIIERAGVKIGLLGLVEEEWLETLTIDPEYVR 152 (257)
T ss_pred cEEeecccccccCHHHHHHHHhhCCCCEEEEEEEECCCCcccCCCCCeEEEEECCeEEEEEEEecccccccccCCCCcce
Confidence 466899999977887777765322 12110 0 1 112235767776431 335666543211 1
Q ss_pred -CCHHHHHHHHHHHH-hhcCCCCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCCcceeecCCC
Q 003788 322 -IDVYQFKFFAELVK-EQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVPSD 399 (795)
Q Consensus 322 -ID~~Q~~wf~~ll~-~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY~R~~~~~~~ 399 (795)
.|. .+-+.+.++ .+.+.-|-||+++|-|.... ..+.+++ ..++++|+||.|..... ...
T Consensus 153 ~~d~--~~~~~~~v~~~~~~~~D~iVvl~H~g~~~d------------~~la~~~--~~iD~IlgGH~H~~~~~---~~~ 213 (257)
T cd07406 153 YRDY--VETARELVDELREQGADLIIALTHMRLPND------------KRLAREV--PEIDLILGGHDHEYILV---QVG 213 (257)
T ss_pred EcCH--HHHHHHHHHHHHhCCCCEEEEEeccCchhh------------HHHHHhC--CCCceEEecccceeEee---eEC
Confidence 122 122222221 11234589999999985211 1233443 46999999999986521 111
Q ss_pred CCcccceEEEecCCCcccc
Q 003788 400 GPVYVQHLLVNGCGGAFLH 418 (795)
Q Consensus 400 G~~~~~~lIVsGGGGAfLh 418 (795)
...++-+|..|.++-
T Consensus 214 ----~t~vv~~g~~g~~vg 228 (257)
T cd07406 214 ----GTPIVKSGSDFRTVY 228 (257)
T ss_pred ----CEEEEeCCcCcceEE
Confidence 224555666665543
No 47
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=97.36 E-value=0.0024 Score=66.34 Aligned_cols=34 Identities=24% Similarity=0.219 Sum_probs=21.2
Q ss_pred CCceeEEEcCccCCCcceeecCCCCCcccceEEEecC
Q 003788 376 KGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGC 412 (795)
Q Consensus 376 ~~rV~L~LAGHiHhY~R~~~~~~~G~~~~~~lIVsGG 412 (795)
+.++++.++||+|.=+.+.-.. .|. ...+||.|.
T Consensus 183 ~~~~~~~i~GHtH~~~~~~~~~-~~~--~~~~~~lgd 216 (231)
T TIGR01854 183 RYGVDRLIHGHTHRPAIHPLQA-DGQ--PATRIVLGD 216 (231)
T ss_pred HcCCCEEEECCccCcceeeccc-CCC--ccEEEEECC
Confidence 4589999999999655443221 111 235777765
No 48
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=97.21 E-value=0.0012 Score=64.30 Aligned_cols=14 Identities=21% Similarity=0.188 Sum_probs=11.9
Q ss_pred CCceeEEEcCccCC
Q 003788 376 KGRCKLRIAGDMHH 389 (795)
Q Consensus 376 ~~rV~L~LAGHiHh 389 (795)
..+++++++||+|.
T Consensus 104 ~~~~d~vi~GHtH~ 117 (158)
T TIGR00040 104 ELGVDVLIFGHTHI 117 (158)
T ss_pred ccCCCEEEECCCCC
Confidence 35789999999995
No 49
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=97.18 E-value=0.0066 Score=65.12 Aligned_cols=51 Identities=8% Similarity=0.079 Sum_probs=33.6
Q ss_pred CCeEEEEecCCCCcccccccC-----------------C-cchhhHHHHHhhhCCceeEEEcCccCC-Cccee
Q 003788 341 RDSVIIMTHEPNWLLDWYFNN-----------------V-SGKNVKHLICDYLKGRCKLRIAGDMHH-YMRHS 394 (795)
Q Consensus 341 ~d~VIL~tHeP~w~~~~~~~~-----------------~-~~~~l~~lie~~l~~rV~L~LAGHiHh-Y~R~~ 394 (795)
++.=|++||+|+.--..+.+. . ....++.+++++ |.+..||||.|. |++..
T Consensus 164 ~~vDIlLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~ll~~l---kPryhf~gH~H~~f~~~~ 233 (262)
T cd00844 164 QPIDIFLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEELLKHL---KPRYWFSAHLHVKFAALV 233 (262)
T ss_pred CCCcEEEeCCCCcchhhccchHHhhhcCccchhcccccCCCCHHHHHHHHHh---CCCEEEEecCCcccceec
Confidence 356799999998776443321 1 122344566665 899999999995 66543
No 50
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=97.14 E-value=0.0088 Score=66.17 Aligned_cols=194 Identities=21% Similarity=0.217 Sum_probs=101.9
Q ss_pred CCCCceEEEEEeec--CCCCCCh------hH------------HHHHhcCcccccccCCCCcccCCccEEEEcccccCCC
Q 003788 153 SEKEDLWFDFMADT--GDGGNSS------YS------------VARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPN 212 (795)
Q Consensus 153 ~~~~~~wFd~VaDt--GDG~~st------Y~------------VA~llAq~~L~~~~~~~~~~lPrgdfLvlgGDlvYp~ 212 (795)
.+++.|.+.-+||+ |.|...+ ++ |.+.+|. .++|||+++||+++-
T Consensus 49 ~~~g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~s--------------E~PDlVVfTGD~i~g- 113 (379)
T KOG1432|consen 49 REDGTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLAS--------------EKPDLVVFTGDNIFG- 113 (379)
T ss_pred cCCCceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhc--------------cCCCEEEEeCCcccc-
Confidence 57788999999998 4441111 11 3333332 468999999999996
Q ss_pred CChhhhhhccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChh--HHHHHhhc-----
Q 003788 213 PSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLN--TFMRFICH----- 285 (795)
Q Consensus 213 gs~e~Y~~rf~~Pye~Al~~~~~~~~~~i~~~~p~~p~~~~~l~~~~~P~ifAIPGNHDwyDGL~--~F~r~F~~----- 285 (795)
-+...+++-+..-..-+ -.++-| +-++.||||=-..++ ..+.++..
T Consensus 114 ~~t~Da~~sl~kAvaP~--------------------------I~~~IP-wA~~lGNHDdes~ltr~ql~~~i~~lP~s~ 166 (379)
T KOG1432|consen 114 HSTQDAATSLMKAVAPA--------------------------IDRKIP-WAAVLGNHDDESDLTRLQLMKFISKLPYSL 166 (379)
T ss_pred cccHhHHHHHHHHhhhH--------------------------hhcCCC-eEEEecccccccccCHHHHHHHHhcCCCcc
Confidence 33344554432222211 122344 999999999644433 12222221
Q ss_pred -cc-cCCccccCCC--cceEEEECC--------C--cEEEEEEecCCC----------CCCCHHHHHHHHHHHHh----h
Q 003788 286 -KS-WLGGWFMPQK--KSYFALQLP--------K--GWWVFGLDLALH----------CDIDVYQFKFFAELVKE----Q 337 (795)
Q Consensus 286 -~~-~~gGw~~pQ~--~SYfAl~Lp--------~--~wwLlgLDsql~----------~dID~~Q~~wf~~ll~~----~ 337 (795)
+. ...|+-..+. ..| -++++ . ..=|.-||+... +.|...|.+|+++.-.+ .
T Consensus 167 ~~v~p~dg~~~~~~g~gny-n~~i~~~~ds~~~~~sv~~lyfld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~~ 245 (379)
T KOG1432|consen 167 SQVNPPDGHMYIIDGFGNY-NLQIEGAIDSELENKSVFNLYFLDSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKEPN 245 (379)
T ss_pred ccCCCcccceeeeecccce-EEEeccCCCcccccCceeeEEEEecCCcccccccccCccchhhhhHHHHhhhhhhhhccc
Confidence 11 1123322121 223 33332 1 233667776532 24567899999997621 1
Q ss_pred cCCCC-eEEEEecCCCCcccccccC-C------c----chhhHHHHHhhh-CCceeEEEcCccCC
Q 003788 338 VGERD-SVIIMTHEPNWLLDWYFNN-V------S----GKNVKHLICDYL-KGRCKLRIAGDMHH 389 (795)
Q Consensus 338 v~~~d-~VIL~tHeP~w~~~~~~~~-~------~----~~~l~~lie~~l-~~rV~L~LAGHiHh 389 (795)
...++ +=+..-|-|.=........ + + ...-...+..+- ..+|+.+++||.|.
T Consensus 246 ~~~~P~p~La~~HIP~~E~~~~~~~tp~~g~~~E~~~~~~~~sg~~~~L~~r~~Vk~vf~GHdHv 310 (379)
T KOG1432|consen 246 SKYNPQPGLAFFHIPLPEFLELESKTPLIGVFQEGVSASKHNSGFLTTLVNRGNVKGVFCGHDHV 310 (379)
T ss_pred CccCCCCceEEEEcccHHHhhccCCCcccceeeccccccccccHHHHHHHhccCcceEEeccccc
Confidence 11233 6677778776333221110 0 0 000112333333 57899999999995
No 51
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=97.10 E-value=0.012 Score=62.47 Aligned_cols=123 Identities=18% Similarity=0.160 Sum_probs=61.7
Q ss_pred EEeCCCCCCCCChhHHHHHhhccc--cC-Cccc-----cCCCcceEEEECCCc--EEEEEEecCCCC---------C---
Q 003788 264 YIIPGNHDWFDGLNTFMRFICHKS--WL-GGWF-----MPQKKSYFALQLPKG--WWVFGLDLALHC---------D--- 321 (795)
Q Consensus 264 fAIPGNHDwyDGL~~F~r~F~~~~--~~-gGw~-----~pQ~~SYfAl~Lp~~--wwLlgLDsql~~---------d--- 321 (795)
++.+||||+.-|.+.+.+..-.-. ++ +... .|.-..|..++...| .=++|+=+.... +
T Consensus 86 ~~~lGNHe~d~g~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~i~~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~ 165 (277)
T cd07410 86 AGTLGNHEFNYGLDYLDKVIKQANFPVLSANVIDADTGEPFLKPYVILERDVGVKVGIIGLTTPQIPNWEKPNLIGGLKF 165 (277)
T ss_pred EEeecccCcccCHHHHHHHHHhCCCCEEEEEEEeCCCCCcccCCEEEEEecCCCEEEEEecCCcccccccCcccCCCcEE
Confidence 556799997657776666543211 11 1111 122235766777613 334555322110 1
Q ss_pred CCHH-HHHHHHHHHHhhcCCCCeEEEEecCCCCcccccccCCc-chhhHHHHHhhhCCceeEEEcCccCCCcc
Q 003788 322 IDVY-QFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVS-GKNVKHLICDYLKGRCKLRIAGDMHHYMR 392 (795)
Q Consensus 322 ID~~-Q~~wf~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~-~~~l~~lie~~l~~rV~L~LAGHiHhY~R 392 (795)
.|.. ..+...+.+++ +.-|-||+++|-+.-.... .... ......+.+++ ..++++|+||.|....
T Consensus 166 ~d~~~~~~~~v~~lr~--~~~D~IIvl~H~g~~~~~~--~~~~~~~~~~~la~~~--~~vD~IlgGHsH~~~~ 232 (277)
T cd07410 166 TDPVETAKKYVPKLRA--EGADVVVVLAHGGFERDLE--ESLTGENAAYELAEEV--PGIDAILTGHQHRRFP 232 (277)
T ss_pred cCHHHHHHHHHHHHHH--cCCCEEEEEecCCcCCCcc--cccCCccHHHHHHhcC--CCCcEEEeCCCccccc
Confidence 1221 23333333332 3458999999987654321 0011 11122444443 4699999999997543
No 52
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=97.09 E-value=0.0042 Score=72.53 Aligned_cols=129 Identities=20% Similarity=0.300 Sum_probs=79.5
Q ss_pred CcEEEeCCCCCCCCChhHHHHHhhcc----cc-----CCccc---------cCCCcceEEEECCCcEEEEEEecCCCC--
Q 003788 261 PQCYIIPGNHDWFDGLNTFMRFICHK----SW-----LGGWF---------MPQKKSYFALQLPKGWWVFGLDLALHC-- 320 (795)
Q Consensus 261 P~ifAIPGNHDwyDGL~~F~r~F~~~----~~-----~gGw~---------~pQ~~SYfAl~Lp~~wwLlgLDsql~~-- 320 (795)
.++|+..||||.+. ...|.--+..+ .| ..-|. +-+++.||+.....|..++.|++.-..
T Consensus 251 vpvypalGNhe~~P-~N~F~~~~~~~~~~~~wly~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~ 329 (577)
T KOG3770|consen 251 VPVYPALGNHEIHP-VNLFAPGSVPKRHSQLWLYKHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAP 329 (577)
T ss_pred CceeeecccCCCCc-HhhcCCCCCcchhhhhHHHHHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEecccccccc
Confidence 34999999999763 22233222211 11 11122 335667999999999999999986321
Q ss_pred -------CCC-HHHHHHHHHHHHhhcCCCCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccC-CCc
Q 003788 321 -------DID-VYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMH-HYM 391 (795)
Q Consensus 321 -------dID-~~Q~~wf~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiH-hY~ 391 (795)
.+| .+|++||..+++++-..++.|=+++|-|.=.......- ..+--..+.++ ..-+.-.+-||.| ...
T Consensus 330 N~~L~~n~tdp~~~lqWf~~~L~~ae~~GekVhil~HIPpG~~~c~~~w--s~~f~~iv~r~-~~tI~gqf~GH~h~d~f 406 (577)
T KOG3770|consen 330 NFWLYANQTDPIDQLQWFVDQLQEAESAGEKVHILGHIPPGDGVCLEGW--SINFYRIVNRF-RSTIAGQFYGHTHIDEF 406 (577)
T ss_pred ceeeeecCCCchHHhhHHHHHHHHHHhcCCEEEEEEeeCCCCcchhhhh--hHHHHHHHHHH-HHhhhhhccccCcceeE
Confidence 123 57899999999866678899999999998553221110 01111222232 3346678999999 444
Q ss_pred ce
Q 003788 392 RH 393 (795)
Q Consensus 392 R~ 393 (795)
|.
T Consensus 407 ~v 408 (577)
T KOG3770|consen 407 RV 408 (577)
T ss_pred EE
Confidence 43
No 53
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=97.09 E-value=0.0027 Score=65.03 Aligned_cols=25 Identities=12% Similarity=-0.065 Sum_probs=19.9
Q ss_pred CCcceEEEECCCcEEEEEEecCCCC
Q 003788 296 QKKSYFALQLPKGWWVFGLDLALHC 320 (795)
Q Consensus 296 Q~~SYfAl~Lp~~wwLlgLDsql~~ 320 (795)
+..-|+.++++....|+.||+...-
T Consensus 145 ~~~~y~~~~~G~~~~~~~lD~R~~R 169 (228)
T cd07389 145 RGGIYRSFRFGDLVDLILLDTRTYR 169 (228)
T ss_pred CceEEEEEecCCcceEEEEeccccc
Confidence 3457999999987689999987654
No 54
>PHA02546 47 endonuclease subunit; Provisional
Probab=96.93 E-value=0.0044 Score=68.34 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=11.1
Q ss_pred CcEEEeCCCCCCC
Q 003788 261 PQCYIIPGNHDWF 273 (795)
Q Consensus 261 P~ifAIPGNHDwy 273 (795)
.++++|+||||.+
T Consensus 77 i~v~~I~GNHD~~ 89 (340)
T PHA02546 77 ITLHVLVGNHDMY 89 (340)
T ss_pred CeEEEEccCCCcc
Confidence 3499999999975
No 55
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.92 E-value=0.0034 Score=66.51 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=13.3
Q ss_pred cEEEeCCCCCCCCChh
Q 003788 262 QCYIIPGNHDWFDGLN 277 (795)
Q Consensus 262 ~ifAIPGNHDwyDGL~ 277 (795)
++++|+||||..+.+.
T Consensus 77 ~v~~i~GNHD~~~~~~ 92 (253)
T TIGR00619 77 PIVVISGNHDSAQRLS 92 (253)
T ss_pred eEEEEccCCCChhhcc
Confidence 4999999999977654
No 56
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=96.89 E-value=0.015 Score=61.66 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=58.4
Q ss_pred EeCCCCCCCCChhHHHHHhhccc--cCC------ccccCCCcceEEEECCC-cEEEEEEecCCCCCCC----------HH
Q 003788 265 IIPGNHDWFDGLNTFMRFICHKS--WLG------GWFMPQKKSYFALQLPK-GWWVFGLDLALHCDID----------VY 325 (795)
Q Consensus 265 AIPGNHDwyDGL~~F~r~F~~~~--~~g------Gw~~pQ~~SYfAl~Lp~-~wwLlgLDsql~~dID----------~~ 325 (795)
++-||||+.-|.+.+.+.+-+-. +++ +...+.-..|..++... ..=++|+.+....... ..
T Consensus 87 a~~GNHefd~g~~~l~~~~~~~~~~~l~aN~~~~~~~~~~~~~~~i~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~~ 166 (264)
T cd07411 87 AMVGHWEFTYGPERVRELFGRLNWPFLAANVYDDEAGERVFPPYRIKEVGGVKIGVIGQTFPYVPIANPPRFTPGLTFGI 166 (264)
T ss_pred EEecccccccCHHHHHHHHhhCCCCEEEEEEEeCCCCCcccCCEEEEEECCEEEEEEEeccCCcccccCcCCCCCcEECC
Confidence 33399997767777666553321 110 01111222465555532 2456777654211110 11
Q ss_pred HHHHHHHHHHh--hcCCCCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCC
Q 003788 326 QFKFFAELVKE--QVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHY 390 (795)
Q Consensus 326 Q~~wf~~ll~~--~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY 390 (795)
..+.+.+.+.+ +.+..|-||+++|-+.-. -..+.+++ ..++++|+||.|..
T Consensus 167 ~~~~~~~~~~~~~~~~~~D~iI~l~H~g~~~------------~~~la~~~--~~iDlilgGH~H~~ 219 (264)
T cd07411 167 REEELQEVVVKLRREEGVDVVVLLSHNGLPV------------DVELAERV--PGIDVILSGHTHER 219 (264)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEecCCchh------------hHHHHhcC--CCCcEEEeCccccc
Confidence 23344443221 124568999999987521 01233443 46999999999964
No 57
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=96.85 E-value=0.018 Score=65.38 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=26.8
Q ss_pred CeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCCc
Q 003788 342 DSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 391 (795)
Q Consensus 342 d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY~ 391 (795)
..-|++.|....... .+. +.-+++++...++++.||+|..+
T Consensus 201 ~fnIlv~Hq~~~~~~-----~~~----~ipe~llp~~fDYValGHiH~~~ 241 (405)
T TIGR00583 201 WFNLLVLHQNHAAHT-----STS----FLPESFIPDFFDLVIWGHEHECL 241 (405)
T ss_pred ceEEEEeCceecCCC-----Ccc----cCchhhhhccCcEEEeccccccc
Confidence 457999999863221 111 22245556679999999999754
No 58
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=96.66 E-value=0.0026 Score=64.21 Aligned_cols=35 Identities=14% Similarity=0.087 Sum_probs=23.0
Q ss_pred HHhhh-CCceeEEEcCccCCCcceeecCCCCCcccceEEEecC
Q 003788 371 ICDYL-KGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGC 412 (795)
Q Consensus 371 ie~~l-~~rV~L~LAGHiHhY~R~~~~~~~G~~~~~~lIVsGG 412 (795)
+.+.+ ..+++++++||+|.-...... ...++++|+
T Consensus 181 ~~~~~~~~~~~~~i~GH~H~~~~~~~~-------~~~~~n~G~ 216 (217)
T cd07398 181 VARLARRKGVDGVICGHTHRPALHELD-------GKLYINLGD 216 (217)
T ss_pred HHHHHHhcCCCEEEECCCCCCCeEEEC-------CEEEEECCC
Confidence 34433 578999999999976555422 225677764
No 59
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=96.55 E-value=0.11 Score=54.92 Aligned_cols=123 Identities=20% Similarity=0.220 Sum_probs=62.0
Q ss_pred CCcEEEeCCCCCCCCChhHHHHHhhccc--cCC-ccc-----cCCCcceEEEECCCc--EEEEEEecCCC------CC--
Q 003788 260 GPQCYIIPGNHDWFDGLNTFMRFICHKS--WLG-GWF-----MPQKKSYFALQLPKG--WWVFGLDLALH------CD-- 321 (795)
Q Consensus 260 ~P~ifAIPGNHDwyDGL~~F~r~F~~~~--~~g-Gw~-----~pQ~~SYfAl~Lp~~--wwLlgLDsql~------~d-- 321 (795)
+..++ .+||||+.-|++.+.+.+-.-. +++ ... .+.-.+|-.++...| .=++|+-+... ..
T Consensus 70 g~d~~-~~GNHefd~G~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~py~i~~~~~G~kIgviG~~~~~~~~~~~~~~~~ 148 (257)
T cd07408 70 GYDAV-TPGNHEFDYGLDRLKELSKEADFPFLSANVYDNDTGKRVFKPYKIKELGNGVKVGVIGLTTPETATKTHPKNVK 148 (257)
T ss_pred CCcEE-ccccccccCCHHHHHHHHhhCCCCEEEEEEEEcCCCCcccCCEEEEEcCCCCEEEEEeecCcCcccccCccccC
Confidence 34454 5799998778887776553321 111 111 111124655566524 34566654211 11
Q ss_pred -C---CHH--HHHHHHHHHHhhcCCCCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCCcce
Q 003788 322 -I---DVY--QFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRH 393 (795)
Q Consensus 322 -I---D~~--Q~~wf~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY~R~ 393 (795)
+ |.. -.++..+.++ -+.-|-||+++|.+...... ......+.++. ..++++|+||.|....-
T Consensus 149 ~~~~~d~~~~~~~~~v~~l~--~~~~D~iIvl~H~G~~~~~~------~~~~~~la~~~--~giDvIigGH~H~~~~~ 216 (257)
T cd07408 149 DVTFEDPIEEAKKVIVAALK--AKGADVIVALGHLGVDRTSS------PWTSTELAANV--TGIDLIIDGHSHTTIEI 216 (257)
T ss_pred CcEEecHHHHHHHHHHHHHH--hCCCCEEEEEeCcCcCCCCC------CccHHHHHHhC--CCceEEEeCCCcccccC
Confidence 1 211 1122111121 13458999999988755421 11112333332 46999999999976543
No 60
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=96.49 E-value=0.0032 Score=71.29 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=17.5
Q ss_pred cEEEeCCCCCCCCChhHHHHHhh
Q 003788 262 QCYIIPGNHDWFDGLNTFMRFIC 284 (795)
Q Consensus 262 ~ifAIPGNHDwyDGL~~F~r~F~ 284 (795)
++++|+||||.+..+....+.+.
T Consensus 76 ~v~~I~GNHD~~~~l~~~~~~l~ 98 (407)
T PRK10966 76 QLVVLAGNHDSVATLNESRDLLA 98 (407)
T ss_pred cEEEEcCCCCChhhhhhHHHHHH
Confidence 39999999999887665555443
No 61
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.40 E-value=0.012 Score=62.45 Aligned_cols=30 Identities=20% Similarity=0.196 Sum_probs=21.1
Q ss_pred CCceeEEEcCccCCCcceeecCCCCCcccceEEEecC
Q 003788 376 KGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGC 412 (795)
Q Consensus 376 ~~rV~L~LAGHiHhY~R~~~~~~~G~~~~~~lIVsGG 412 (795)
++.|+.+++||+|+-+-+. .+ +..+|+.|.
T Consensus 185 ~~~vd~vI~GH~Hr~ai~~-i~------~~~yi~lGd 214 (237)
T COG2908 185 RHGVDGVIHGHTHRPAIHN-IP------GITYINLGD 214 (237)
T ss_pred HcCCCEEEecCcccHhhcc-CC------CceEEecCc
Confidence 6789999999999743332 11 236888865
No 62
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=96.31 E-value=0.019 Score=57.88 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=12.9
Q ss_pred CCceeEEEcCccCCCc
Q 003788 376 KGRCKLRIAGDMHHYM 391 (795)
Q Consensus 376 ~~rV~L~LAGHiHhY~ 391 (795)
+..++++++||+|.-.
T Consensus 104 ~~~~dvii~GHTH~p~ 119 (178)
T cd07394 104 QLDVDILISGHTHKFE 119 (178)
T ss_pred hcCCCEEEECCCCcce
Confidence 3578999999999643
No 63
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=96.14 E-value=0.14 Score=55.11 Aligned_cols=117 Identities=14% Similarity=0.175 Sum_probs=60.3
Q ss_pred CCcEEEeCCCCCCCCChhHHHHHhhccc--cCC-ccc--------cCCCcceEEEECCC-cEEEEEEecCCCCC------
Q 003788 260 GPQCYIIPGNHDWFDGLNTFMRFICHKS--WLG-GWF--------MPQKKSYFALQLPK-GWWVFGLDLALHCD------ 321 (795)
Q Consensus 260 ~P~ifAIPGNHDwyDGL~~F~r~F~~~~--~~g-Gw~--------~pQ~~SYfAl~Lp~-~wwLlgLDsql~~d------ 321 (795)
+..+. .+||||+--|.+.+.+.+-+-. +++ +.. .+.-..|-.++... ..-|+|+-+.....
T Consensus 82 g~D~~-~lGNHefd~G~~~l~~~~~~~~~p~l~aNv~~~~~~~~~~~~~~p~~i~~~~G~kIgviG~~~~~~~~~~~~~~ 160 (281)
T cd07409 82 GYDAM-TLGNHEFDDGVEGLAPFLNNLKFPVLSANIDTSNEPPLLDGLLKPSTILTVGGEKIGIIGYTTPDTTELSSPGG 160 (281)
T ss_pred CCCEE-EeccccccCCHHHHHHHHHhCCCCEEEEeeecCCCccccccccCCeEEEEECCEEEEEEEEecCcccccccCCC
Confidence 34344 4699999878777776554321 111 111 11112454444422 25577775543211
Q ss_pred -CC-HHHHHHHHHHHHhh-cCCCCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCCc
Q 003788 322 -ID-VYQFKFFAELVKEQ-VGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 391 (795)
Q Consensus 322 -ID-~~Q~~wf~~ll~~~-v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY~ 391 (795)
+. ....+-+++.+++. .+.-|-||+++|-..-. -..+.+++ ..++++|+||.|...
T Consensus 161 ~~~~~d~~~~~~~~v~~lr~~~~D~II~l~H~G~~~------------d~~la~~~--~giD~IiggH~H~~~ 219 (281)
T cd07409 161 KVKFLDEIEAAQKEADKLKAQGVNKIIALSHSGYEV------------DKEIARKV--PGVDVIVGGHSHTFL 219 (281)
T ss_pred ceEECCHHHHHHHHHHHHHhcCCCEEEEEeccCchh------------HHHHHHcC--CCCcEEEeCCcCccc
Confidence 11 01122344433221 12358899999986410 11344444 469999999999754
No 64
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=96.11 E-value=0.068 Score=55.89 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=14.1
Q ss_pred CceeEEEcCccCCCccee
Q 003788 377 GRCKLRIAGDMHHYMRHS 394 (795)
Q Consensus 377 ~rV~L~LAGHiHhY~R~~ 394 (795)
...+++++||.|.+....
T Consensus 190 ~~p~vii~Gh~h~~~~~~ 207 (243)
T cd07386 190 EVPDILHTGHVHVYGVGV 207 (243)
T ss_pred CCCCEEEECCCCchHhEE
Confidence 367899999999865553
No 65
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=95.51 E-value=0.52 Score=50.69 Aligned_cols=171 Identities=20% Similarity=0.215 Sum_probs=85.2
Q ss_pred EEEEeecCCCCCChhHHHHHhcCcccccccCCCCcccCCccEEEEcccccCCCCChhhhhhccccchhhhcCCCCCCccc
Q 003788 160 FDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWYKKD 239 (795)
Q Consensus 160 Fd~VaDtGDG~~stY~VA~llAq~~L~~~~~~~~~~lPrgdfLvlgGDlvYp~gs~e~Y~~rf~~Pye~Al~~~~~~~~~ 239 (795)
+.|+||. -|......++..+.+-- . .-..||++.-||.+-.+ .. +. +|-..+|.
T Consensus 2 ilfigdi-~g~~G~~~~~~~l~~lk--~--------~~~~D~vi~NgEn~~gg-~g--l~----~~~~~~L~-------- 55 (255)
T cd07382 2 ILFIGDI-VGKPGRKAVKEHLPKLK--K--------EYKIDFVIANGENAAGG-KG--IT----PKIAKELL-------- 55 (255)
T ss_pred EEEEEeC-CCHHHHHHHHHHHHHHH--H--------HCCCCEEEECCccccCC-CC--CC----HHHHHHHH--------
Confidence 5788888 23333445666664321 1 12478999999965432 11 10 22222221
Q ss_pred ccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCC-hhHHHHHhhccccCCccc--cCCCcceEEEECCCcEE--EEEE
Q 003788 240 HVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDG-LNTFMRFICHKSWLGGWF--MPQKKSYFALQLPKGWW--VFGL 314 (795)
Q Consensus 240 ~i~~~~p~~p~~~~~l~~~~~P~ifAIPGNHDwyDG-L~~F~r~F~~~~~~gGw~--~pQ~~SYfAl~Lp~~ww--LlgL 314 (795)
.-+..++.+ |||+|=.| +..|+......-...... .|. +.|..++.. |.- ++++
T Consensus 56 ------------------~~G~D~iTl-GNH~fD~gel~~~l~~~~~~l~~aN~~~~~pg-~~~~i~~~~-G~kIaVigl 114 (255)
T cd07382 56 ------------------SAGVDVITM-GNHTWDKKEILDFIDEEPRLLRPANYPPGTPG-RGYGVVEVN-GKKIAVINL 114 (255)
T ss_pred ------------------hcCCCEEEe-cccccCcchHHHHHhcCcCceEeeecCCCCCC-CCeEEEEEC-CEEEEEEEE
Confidence 124546666 99999665 333333221000011111 222 246666664 444 4444
Q ss_pred ecCC-CCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCC
Q 003788 315 DLAL-HCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHY 390 (795)
Q Consensus 315 Dsql-~~dID~~Q~~wf~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY 390 (795)
-... ...++.+ ++-+++++++....-|-||+++|--. +. ....+..++.++|++++.||+|.-
T Consensus 115 ~g~~~~~~~~~P-~~~~~~~v~~lk~~~D~IIV~~H~g~----------ts--Ek~ala~~ldg~VdvIvGtHTHv~ 178 (255)
T cd07382 115 MGRVFMPPLDNP-FRAADELLEELKEEADIIFVDFHAEA----------TS--EKIALGWYLDGRVSAVVGTHTHVQ 178 (255)
T ss_pred ecccCCCcCCCH-HHHHHHHHHHHhcCCCEEEEEECCCC----------CH--HHHHHHHhCCCCceEEEeCCCCcc
Confidence 2111 1123333 33455555421223578999999732 11 111223455789999999999964
No 66
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=95.35 E-value=0.011 Score=66.01 Aligned_cols=52 Identities=27% Similarity=0.402 Sum_probs=33.0
Q ss_pred CccEEEEcccccCCCCChhhhhh-ccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCCh
Q 003788 198 RGDVLLIGGDLAYPNPSAFTYER-RLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGL 276 (795)
Q Consensus 198 rgdfLvlgGDlvYp~gs~e~Y~~-rf~~Pye~Al~~~~~~~~~~i~~~~p~~p~~~~~l~~~~~P~ifAIPGNHDwyDGL 276 (795)
+.|+||++|| +|..+....+.. ++.+-++. ++. .+.++|+|+||||.-+++
T Consensus 40 ~vD~vliAGD-lFd~~~Ps~~a~~~~~~~l~~--------------------------l~~-~~Ipv~~I~GNHD~~~~~ 91 (390)
T COG0420 40 KVDFVLIAGD-LFDTNNPSPRALKLFLEALRR--------------------------LKD-AGIPVVVIAGNHDSPSRL 91 (390)
T ss_pred cCCEEEEccc-cccCCCCCHHHHHHHHHHHHH--------------------------hcc-CCCcEEEecCCCCchhcc
Confidence 4699999999 577766554542 33222222 112 234499999999987664
Q ss_pred h
Q 003788 277 N 277 (795)
Q Consensus 277 ~ 277 (795)
.
T Consensus 92 ~ 92 (390)
T COG0420 92 S 92 (390)
T ss_pred c
Confidence 4
No 67
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=94.87 E-value=0.48 Score=60.58 Aligned_cols=189 Identities=14% Similarity=0.100 Sum_probs=93.8
Q ss_pred CCceEEEEEeecCCCCCChhHHHHHhcCcccccccCCCCcccCCccEEEE-cccccCCCCChhhhhhccccchhhhcCCC
Q 003788 155 KEDLWFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLI-GGDLAYPNPSAFTYERRLFRPFEYALQPP 233 (795)
Q Consensus 155 ~~~~wFd~VaDtGDG~~stY~VA~llAq~~L~~~~~~~~~~lPrgdfLvl-gGDlvYp~gs~e~Y~~rf~~Pye~Al~~~ 233 (795)
..++.+..+.|+=........++.++.+... ..+++|++ +||.. .|+...-..+- +|.-.+|.
T Consensus 658 ~~~l~Il~~nD~Hg~l~g~~r~~~~i~~~r~-----------~~~~~l~ld~GD~~--~gs~~~~~~~g-~~~~~~ln-- 721 (1163)
T PRK09419 658 NWELTILHTNDFHGHLDGAAKRVTKIKEVKE-----------ENPNTILVDAGDVY--QGSLYSNLLKG-LPVLKMMK-- 721 (1163)
T ss_pred ceEEEEEEEeecccCCCCHHHHHHHHHHHHh-----------hCCCeEEEecCCCC--CCcchhhhcCC-hHHHHHHh--
Confidence 3469999999995322334456666654321 12455555 99965 44431111111 23333321
Q ss_pred CCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChhHHHHHhhccc--------------cCCc---c-ccC
Q 003788 234 PWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICHKS--------------WLGG---W-FMP 295 (795)
Q Consensus 234 ~~~~~~~i~~~~p~~p~~~~~l~~~~~P~ifAIPGNHDwyDGL~~F~r~F~~~~--------------~~gG---w-~~p 295 (795)
. -+. -+.++||||+.-|.+.+.+.+-+-. +++. + ...
T Consensus 722 -----------------------~-lg~-d~~~~GNHEfd~g~~~l~~~l~~~~~~~~~~~~~~~~fp~l~aNv~~~~~~ 776 (1163)
T PRK09419 722 -----------------------E-MGY-DASTFGNHEFDWGPDVLPDWLKGGGDPKNRHQFEKPDFPFVASNIYVKKTG 776 (1163)
T ss_pred -----------------------C-cCC-CEEEecccccccChHHHHHHHHhcccccccccccCCCCCEEEEEEEeCCCC
Confidence 1 123 3559999999888887777664311 1111 1 111
Q ss_pred CC----cceEEEECCCc--EEEEEEecCC------CC---CCC-HHHHHHHHHHHHh--hcCCCCeEEEEecCCCCcccc
Q 003788 296 QK----KSYFALQLPKG--WWVFGLDLAL------HC---DID-VYQFKFFAELVKE--QVGERDSVIIMTHEPNWLLDW 357 (795)
Q Consensus 296 Q~----~SYfAl~Lp~~--wwLlgLDsql------~~---dID-~~Q~~wf~~ll~~--~v~~~d~VIL~tHeP~w~~~~ 357 (795)
+. ..|..++.. | .=|+|+-+.. .. .+. ....+-.++.+++ +.+.-|-||+++|...-....
T Consensus 777 ~~~~~~~py~I~e~~-G~kIgiiGltt~~~~~~~~p~~~~~l~f~d~~e~~~~~v~~Lr~~~~~D~VV~LsH~G~~~d~~ 855 (1163)
T PRK09419 777 KLVSWAKPYILVEVN-GKKVGFIGLTTPETAYKTSPGNVKNLEFKDPAEAAKKWVKELKEKEKVDAIIALTHLGSNQDRT 855 (1163)
T ss_pred ccccccCCEEEEEEC-CEEEEEEEecccccccccCCCCcCCcEEcCHHHHHHHHHHHHHhhcCCCEEEEEecCCcccccc
Confidence 11 246555543 3 3356664321 01 110 0112223333321 013458999999998643211
Q ss_pred cccCCcchhhHHHHHhhhCCceeEEEcCccCCCc
Q 003788 358 YFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 391 (795)
Q Consensus 358 ~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY~ 391 (795)
........+.+++ ..|+++|+||.|...
T Consensus 856 ----~~~~~~~~lA~~v--~gIDvIigGHsH~~~ 883 (1163)
T PRK09419 856 ----TGEITGLELAKKV--KGVDAIISAHTHTLV 883 (1163)
T ss_pred ----ccccHHHHHHHhC--CCCCEEEeCCCCccc
Confidence 0111123444444 359999999999754
No 68
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=94.68 E-value=0.54 Score=51.07 Aligned_cols=84 Identities=15% Similarity=0.215 Sum_probs=45.9
Q ss_pred ceEEEECCCcEE--EEEEecCCC---CCC---C---HHHHHHHHHHHHhhcCCCCeEEEEecCCCCcccccccCCcchhh
Q 003788 299 SYFALQLPKGWW--VFGLDLALH---CDI---D---VYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNV 367 (795)
Q Consensus 299 SYfAl~Lp~~ww--LlgLDsql~---~dI---D---~~Q~~wf~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l 367 (795)
+|..++..+|.. ++|+=+... ..+ | ..|.+|+.+++++ +.-|-||+++|-..-... +... .
T Consensus 137 ~y~i~~~~~G~kIgiiGltt~~~~~~~~~~f~d~~~~~~~~~v~~~l~~--~~~DvIIvlsH~G~~~d~-----~~~~-~ 208 (282)
T cd07407 137 RYRKFTTKHGLRVLAFGFLFDFKGAANGVTVQPVADVVQEPWFQDAINN--EDVDLILVLGHMPVRDDA-----EFKV-L 208 (282)
T ss_pred ceEEEEcCCCcEEEEEEEecccccCCCCcEEcCHHHHHHHHHHHHHHHh--cCCCEEEEEeCCCCCCCc-----cHHH-H
Confidence 576777654544 566643211 111 2 2344577776653 346889999998875431 1111 1
Q ss_pred HHHHHhhhCCceeEEEcCccCCC
Q 003788 368 KHLICDYLKGRCKLRIAGDMHHY 390 (795)
Q Consensus 368 ~~lie~~l~~rV~L~LAGHiHhY 390 (795)
...+.+.++...++.|+||.|..
T Consensus 209 ~~~la~~~~~id~~Ii~GHsH~~ 231 (282)
T cd07407 209 HDAIRKIFPDTPIQFLGGHSHVR 231 (282)
T ss_pred HHHHHHhCCCCCEEEEeCCcccc
Confidence 22233333433448999999974
No 69
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=94.62 E-value=0.017 Score=59.55 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=30.8
Q ss_pred CCccEEEEcccccCCCCChhhhhhccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCC
Q 003788 197 PRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWF 273 (795)
Q Consensus 197 PrgdfLvlgGDlvYp~gs~e~Y~~rf~~Pye~Al~~~~~~~~~~i~~~~p~~p~~~~~l~~~~~P~ifAIPGNHDwy 273 (795)
.+.|.|+++||++=-++...+--+.+.+..+.+.. ..++ ++.|+||||..
T Consensus 31 ~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~--------------------------~~~~-v~~l~GNHE~~ 80 (208)
T cd07425 31 GGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAK--------------------------AGGK-VHFLLGNHELM 80 (208)
T ss_pred CCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHh--------------------------cCCe-EEEeeCCCcHH
Confidence 45789999999886555544444444333332211 1223 99999999963
No 70
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=94.39 E-value=0.044 Score=54.28 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=24.6
Q ss_pred CCCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCCccee
Q 003788 340 ERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHS 394 (795)
Q Consensus 340 ~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY~R~~ 394 (795)
-+...|+++|.|..... . ..+.+++++||+|..+.-.
T Consensus 105 ~~~~~i~l~H~~~~~~~-------~-----------~~~~d~vi~GHtH~~~~~~ 141 (168)
T cd07390 105 IGGRRVYLSHYPILEWN-------G-----------LDRGSWNLHGHIHSNSPDI 141 (168)
T ss_pred ECCEEEEEEeCCcccCC-------C-----------CCCCeEEEEeeeCCCCCCC
Confidence 35788999997643211 0 2367899999999755443
No 71
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=93.89 E-value=2.1 Score=46.39 Aligned_cols=53 Identities=11% Similarity=0.146 Sum_probs=30.3
Q ss_pred CCCeEEEEecCCCCcccccccCCcc-hhhHHHHHhhhCCceeEEEcCccCCCcce
Q 003788 340 ERDSVIIMTHEPNWLLDWYFNNVSG-KNVKHLICDYLKGRCKLRIAGDMHHYMRH 393 (795)
Q Consensus 340 ~~d~VIL~tHeP~w~~~~~~~~~~~-~~l~~lie~~l~~rV~L~LAGHiHhY~R~ 393 (795)
.-|-||+++|-..-........+.. .....++.+. ...++++|+||.|.....
T Consensus 191 ~~D~IIvL~H~G~~~~~~~~~~~~~~~~~~~l~~~~-~~~iD~IlgGHsH~~~~~ 244 (288)
T cd07412 191 GVDAIVVLAHEGGSTKGGDDTCSAASGPIADIVNRL-DPDVDVVFAGHTHQAYNC 244 (288)
T ss_pred CCCEEEEEeCCCCCCCCCCccccccChhHHHHHhhc-CCCCCEEEeCccCccccc
Confidence 4589999999876543221100000 0122233332 357999999999976543
No 72
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=93.55 E-value=1.8 Score=46.81 Aligned_cols=51 Identities=18% Similarity=0.066 Sum_probs=30.1
Q ss_pred CCCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCCcc
Q 003788 340 ERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMR 392 (795)
Q Consensus 340 ~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY~R 392 (795)
.-|-||+++|-........... ... -..+.+++....++++|+||.|....
T Consensus 173 ~~D~VI~lsH~G~~~~~~~~~~-~~~-~~~lA~~~~~~giD~IigGHsH~~~~ 223 (285)
T cd07405 173 KPDIVIAATHMGHYDNGEHGSN-APG-DVEMARALPAGGLDLIVGGHSQDPVC 223 (285)
T ss_pred CCCEEEEEecccccCCcccccc-Cch-HHHHHHhcCCCCCCEEEeCCCCcccc
Confidence 4589999999987543211110 011 11333433235799999999997653
No 73
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=93.27 E-value=0.072 Score=52.93 Aligned_cols=16 Identities=31% Similarity=0.239 Sum_probs=12.8
Q ss_pred CCccEEEEcccccCCC
Q 003788 197 PRGDVLLIGGDLAYPN 212 (795)
Q Consensus 197 PrgdfLvlgGDlvYp~ 212 (795)
.++|.||++||++...
T Consensus 40 ~~~d~lii~GDl~~~~ 55 (172)
T cd07391 40 YGPERLIILGDLKHSF 55 (172)
T ss_pred cCCCEEEEeCcccccc
Confidence 3579999999999643
No 74
>PRK09453 phosphodiesterase; Provisional
Probab=93.14 E-value=0.13 Score=51.40 Aligned_cols=38 Identities=24% Similarity=0.210 Sum_probs=23.0
Q ss_pred EEEEEeecCCCCCChhHHHHHhcCcccccccCCCCcccCCccEEEEcccccC
Q 003788 159 WFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAY 210 (795)
Q Consensus 159 wFd~VaDtGDG~~stY~VA~llAq~~L~~~~~~~~~~lPrgdfLvlgGDlvY 210 (795)
.+.+++|+=.. ..+..++++.-. ...+|.++++||++.
T Consensus 2 ri~viSD~Hg~---~~~~~~~l~~~~-----------~~~~d~ii~lGDi~~ 39 (182)
T PRK09453 2 KLMFASDTHGS---LPATEKALELFA-----------QSGADWLVHLGDVLY 39 (182)
T ss_pred eEEEEEeccCC---HHHHHHHHHHHH-----------hcCCCEEEEcccccc
Confidence 46789999522 223333333210 134789999999875
No 75
>PRK04036 DNA polymerase II small subunit; Validated
Probab=92.75 E-value=0.11 Score=60.68 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=28.6
Q ss_pred CCceEEEEEeecCCCCCChh--HHHHHhcCcccccccCCCCcccCCccEEEEcccccC
Q 003788 155 KEDLWFDFMADTGDGGNSSY--SVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAY 210 (795)
Q Consensus 155 ~~~~wFd~VaDtGDG~~stY--~VA~llAq~~L~~~~~~~~~~lPrgdfLvlgGDlvY 210 (795)
+++.++.+++|+.-|.+... ....++.. +.-..+++.....+.+.||++||++-
T Consensus 241 ~~~~~i~~ISDlHlgs~~~~~~~l~~li~~--L~g~~~~~~~~~~~~d~lVIaGDivd 296 (504)
T PRK04036 241 DEKVYAVFISDVHVGSKEFLEDAFEKFIDW--LNGEVGNEEEIASRVKYLIIAGDLVD 296 (504)
T ss_pred CCccEEEEEcccCCCCcchhHHHHHHHHHH--HhCCCccchhhhhcCCEEEEeCcccc
Confidence 56789999999975543321 12222211 11000000001246789999999983
No 76
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=92.22 E-value=0.51 Score=46.87 Aligned_cols=49 Identities=16% Similarity=0.081 Sum_probs=32.4
Q ss_pred CeEEEEecCCCCccccccc--------CCcchhhHHHHHhhhCCceeEEEcCccC-CCcce
Q 003788 342 DSVIIMTHEPNWLLDWYFN--------NVSGKNVKHLICDYLKGRCKLRIAGDMH-HYMRH 393 (795)
Q Consensus 342 d~VIL~tHeP~w~~~~~~~--------~~~~~~l~~lie~~l~~rV~L~LAGHiH-hY~R~ 393 (795)
+.-||+||+|+..-....+ ......++.+++++ |.+..+|||.| .|+|-
T Consensus 69 ~~DILlTh~wP~gi~~~~~~~~~~~~~~~GS~~i~~l~~~l---kPrYhf~gh~~~fyer~ 126 (150)
T cd07380 69 GVDILLTSEWPKGISKLSKVPFEETLLICGSDLIAELAKKL---KPRYHFAGLEGVFYERE 126 (150)
T ss_pred CCCEEECCCCchhhhhhCCCcccccccCCCCHHHHHHHHHc---CCCeEeecCCCceEeec
Confidence 5568999999866422111 11234465666665 88999999999 77763
No 77
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=91.71 E-value=5.9 Score=46.31 Aligned_cols=119 Identities=19% Similarity=0.156 Sum_probs=64.2
Q ss_pred EeCCCCCCCCChhHHHHHhhccc--cC-Ccc------ccCCCcceEEEECCCc-EEEEEEecCCC---------CCCC-H
Q 003788 265 IIPGNHDWFDGLNTFMRFICHKS--WL-GGW------FMPQKKSYFALQLPKG-WWVFGLDLALH---------CDID-V 324 (795)
Q Consensus 265 AIPGNHDwyDGL~~F~r~F~~~~--~~-gGw------~~pQ~~SYfAl~Lp~~-wwLlgLDsql~---------~dID-~ 324 (795)
...|||+..-|++.+.++.-+-. ++ +.. ..+.-.+|.-++.+.- .=++|+.+... .++. .
T Consensus 107 ~tiGNHEFd~g~~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~KIgiIG~~~~~~~~~~~~~~~~~~~f~ 186 (517)
T COG0737 107 MTLGNHEFDYGLEALARLLDEAKFPVLSANVYDKNSTGPPFFKPYAIKEVGGVKIGIIGLTTPTIPTWEKPNAIEGVTFR 186 (517)
T ss_pred EeecccccccCHHHHHHHHhccCCceEEeeeEecCCCCccCcCCeEEEecCCeEEEEEEecCCcccccccccccCCcEEc
Confidence 46799999999888888665432 11 111 1122235766766542 34677765211 1121 1
Q ss_pred HHHHHHHHHHHhhcCC--CCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCC
Q 003788 325 YQFKFFAELVKEQVGE--RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHY 390 (795)
Q Consensus 325 ~Q~~wf~~ll~~~v~~--~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY 390 (795)
...+..++.+.+ +.. -|-||+++|-+.-..........+. + ...+ ..+++.++||.|++
T Consensus 187 d~~e~~~~~i~e-lk~~~vD~iI~LsH~G~~~d~~~~~~~~~~-~-~~~~----~~iD~i~~GH~H~~ 247 (517)
T COG0737 187 DPIEAAKKYIPE-LKGEGVDVIIALSHLGIEDDLELASEVPGD-V-DVAV----PGIDLIIGGHSHTV 247 (517)
T ss_pred CHHHHHHHHHHH-HHhcCCCEEEEEeccCcCcccccccccccc-c-cccc----cCcceEeccCCccc
Confidence 223344444432 222 5899999999986654321111100 0 0001 23999999999976
No 78
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=91.51 E-value=4.7 Score=47.58 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=29.8
Q ss_pred CCCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCCc
Q 003788 340 ERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 391 (795)
Q Consensus 340 ~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY~ 391 (795)
.-|-||+++|.-......... +...-..+.+++-...|+++|+||.|.+-
T Consensus 209 ~~D~IV~LsH~G~~~~~~~~~--~~~~d~~la~~~~~~~IDvIlgGHsH~~~ 258 (551)
T PRK09558 209 KPDVIIALTHMGHYDDGEHGS--NAPGDVEMARSLPAGGLDMIVGGHSQDPV 258 (551)
T ss_pred CCCEEEEEeccccccCCccCC--CCccHHHHHHhCCccCceEEEeCCCCccc
Confidence 358899999988754321110 10111234455422479999999999754
No 79
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=90.81 E-value=1.3 Score=45.13 Aligned_cols=43 Identities=16% Similarity=0.134 Sum_probs=26.3
Q ss_pred CCCCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCC
Q 003788 339 GERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHH 389 (795)
Q Consensus 339 ~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHh 389 (795)
.-++..|.++|-=.+.... +...++.+-++ ..+++++.||+|-
T Consensus 78 ~~~g~ki~l~HGh~~~~~~-----~~~~l~~la~~---~~~Dvli~GHTH~ 120 (172)
T COG0622 78 EVGGVKIFLTHGHLYFVKT-----DLSLLEYLAKE---LGADVLIFGHTHK 120 (172)
T ss_pred EECCEEEEEECCCcccccc-----CHHHHHHHHHh---cCCCEEEECCCCc
Confidence 3467889999974433210 12223333333 4799999999995
No 80
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=89.80 E-value=3.5 Score=48.83 Aligned_cols=112 Identities=17% Similarity=0.167 Sum_probs=56.3
Q ss_pred EEEeCCCCCCCCChhHHHHHhhccc--cCC-cc--c-----cCCCcceEEEECCC-cEEEEEEecCCC--------CCC-
Q 003788 263 CYIIPGNHDWFDGLNTFMRFICHKS--WLG-GW--F-----MPQKKSYFALQLPK-GWWVFGLDLALH--------CDI- 322 (795)
Q Consensus 263 ifAIPGNHDwyDGL~~F~r~F~~~~--~~g-Gw--~-----~pQ~~SYfAl~Lp~-~wwLlgLDsql~--------~dI- 322 (795)
=.+++||||+=-|.+.+.+.+-+-. ++. .. . .+.-..|-.++... ..=++|+.+... .++
T Consensus 84 Da~~lGNHEFd~G~~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~~p~~i~~~~g~kIgiiGl~~~~~~~~~~~~~~~~~ 163 (550)
T TIGR01530 84 DFFTLGNHEFDAGNEGLKEFLEPLEIPVLSANVIPDAASILHGKWKPSAIFERAGEKIAIIGLDTVKKTVESSSPGKDIK 163 (550)
T ss_pred CEEEeccccccCCHHHHHHHHHhCCCCEEEEeeecCCCcccccCcCceEEEEECCeEEEEEEeecCcccccccCCCCceE
Confidence 4568999996557666555443221 111 11 0 01223565555422 256888864211 011
Q ss_pred --CHH--HHHHHHHHHHhhcCCCCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCCc
Q 003788 323 --DVY--QFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 391 (795)
Q Consensus 323 --D~~--Q~~wf~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY~ 391 (795)
|.. -.++..+ +++ +.-|-||+++|--.-. + ..+.+++ ..++++|+||.|.+.
T Consensus 164 f~d~~~~~~~~v~~-Lk~--~g~D~II~lsH~g~~~----------d--~~la~~~--~~iD~IigGHsH~~~ 219 (550)
T TIGR01530 164 FIDEIAAAQIAANA-LKQ--QGINKIILLSHAGFEK----------N--CEIAQKI--NDIDVIVSGDSHYLL 219 (550)
T ss_pred ECCHHHHHHHHHHH-HHh--CCCCEEEEEecCCcHH----------H--HHHHhcC--CCCCEEEeCCCCccc
Confidence 211 1122222 221 2248899999975310 0 1233333 369999999999864
No 81
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=89.75 E-value=0.55 Score=53.62 Aligned_cols=82 Identities=24% Similarity=0.307 Sum_probs=48.1
Q ss_pred CCCCceEEEEEeec---CCC-----------CCChhHHHHH--hcCcccccccCCCCcccCCccEEEEcccccCCC--CC
Q 003788 153 SEKEDLWFDFMADT---GDG-----------GNSSYSVARL--LAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPN--PS 214 (795)
Q Consensus 153 ~~~~~~wFd~VaDt---GDG-----------~~stY~VA~l--lAq~~L~~~~~~~~~~lPrgdfLvlgGDlvYp~--gs 214 (795)
+++..+....+||+ |+- +.+.+.+.+. ++|. .-.||+++++||+.=-+ .+
T Consensus 44 ~~~n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~------------~lkPdvvffLGDLfDeG~~~~ 111 (410)
T KOG3662|consen 44 SNENSTKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQW------------RLKPDVVFFLGDLFDEGQWAG 111 (410)
T ss_pred CCCCceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHh------------ccCCCEEEEeccccccCccCC
Confidence 34678999999998 632 2222333333 2222 23579999999965422 34
Q ss_pred hhhhhhccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCC
Q 003788 215 AFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDW 272 (795)
Q Consensus 215 ~e~Y~~rf~~Pye~Al~~~~~~~~~~i~~~~p~~p~~~~~l~~~~~P~ifAIPGNHDw 272 (795)
.+++.++..+ +.--+.+ | ...++.-||||||+
T Consensus 112 ~eEf~~~~~R-fkkIf~~------------k-------------~~~~~~~i~GNhDI 143 (410)
T KOG3662|consen 112 DEEFKKRYER-FKKIFGR------------K-------------GNIKVIYIAGNHDI 143 (410)
T ss_pred hHHHHHHHHH-HHHhhCC------------C-------------CCCeeEEeCCcccc
Confidence 5666655433 4433221 0 12349999999997
No 82
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=89.21 E-value=1.3 Score=44.88 Aligned_cols=42 Identities=29% Similarity=0.385 Sum_probs=28.5
Q ss_pred CCCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCC
Q 003788 340 ERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHH 389 (795)
Q Consensus 340 ~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHh 389 (795)
=++..|++.|-|.=..+. + +.+.+ +.++..++.+.|-||.|.
T Consensus 106 ~dg~~~~LsHyP~~~~~~----~-~~~~r---~~y~~~~~~llIHGH~H~ 147 (186)
T COG4186 106 WDGEDVYLSHYPRPGQDH----P-GMESR---FDYLRLRVPLLIHGHLHS 147 (186)
T ss_pred ECCeEEEEEeCCCCCCCC----c-chhhh---HHHHhccCCeEEeccccc
Confidence 367888999998744331 1 22222 344577999999999998
No 83
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=87.63 E-value=0.76 Score=47.01 Aligned_cols=42 Identities=21% Similarity=0.149 Sum_probs=25.0
Q ss_pred EEEEeecCCCCCChhHHHHHhcCcccccccCCCCcccCCccEEEEcccccCCCCC
Q 003788 160 FDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPS 214 (795)
Q Consensus 160 Fd~VaDtGDG~~stY~VA~llAq~~L~~~~~~~~~~lPrgdfLvlgGDlvYp~gs 214 (795)
+.+|+|+=.- ..+...+++.-.. .++.|.++++||++.-++.
T Consensus 3 i~~isDiHg~---~~~l~~~l~~~~~----------~~~~d~~~~~GD~v~~g~~ 44 (207)
T cd07424 3 DFVVGDIHGH---YSLLQKALDAVGF----------DPARDRLISVGDLIDRGPE 44 (207)
T ss_pred EEEEECCCCC---HHHHHHHHHHcCC----------CCCCCEEEEeCCcccCCCC
Confidence 5678898311 2344444443210 1357899999998875543
No 84
>PHA02239 putative protein phosphatase
Probab=87.15 E-value=0.72 Score=48.88 Aligned_cols=45 Identities=9% Similarity=0.097 Sum_probs=25.1
Q ss_pred EEEEEeecCCCCCChhHHHHHhcCcccccccCCCCcccCCccEEEEcccccCCCCCh
Q 003788 159 WFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSA 215 (795)
Q Consensus 159 wFd~VaDtGDG~~stY~VA~llAq~~L~~~~~~~~~~lPrgdfLvlgGDlvYp~gs~ 215 (795)
.+-+|+|.= |. .....+++.+-... ....|.|+++||++--++..
T Consensus 2 ~~~~IsDIH-G~--~~~l~~ll~~i~~~---------~~~~d~li~lGD~iDrG~~s 46 (235)
T PHA02239 2 AIYVVPDIH-GE--YQKLLTIMDKINNE---------RKPEETIVFLGDYVDRGKRS 46 (235)
T ss_pred eEEEEECCC-CC--HHHHHHHHHHHhhc---------CCCCCEEEEecCcCCCCCCh
Confidence 467899994 21 22344444432100 11258899999977755543
No 85
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=86.87 E-value=6.5 Score=43.41 Aligned_cols=38 Identities=16% Similarity=0.304 Sum_probs=25.5
Q ss_pred CCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCCc
Q 003788 341 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 391 (795)
Q Consensus 341 ~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY~ 391 (795)
-|-||+++|--.+..+ ..+.+++ ..++++|.||.|.+.
T Consensus 208 vD~II~LsH~g~~~~d-----------~~lA~~v--~gIDvIigGHsH~~l 245 (313)
T cd08162 208 INKIILLSHLQQISIE-----------QALAALL--SGVDVIIAGGSNTLL 245 (313)
T ss_pred CCEEEEEecccccchH-----------HHHHhcC--CCCCEEEeCCCCccC
Confidence 4889999998433211 1233333 359999999999864
No 86
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=85.90 E-value=2.3 Score=49.54 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=29.8
Q ss_pred ceEEEEEeec-CCCCCCh-hHHHHHhcCcccccccCCCCcccCCccEEEEcccccCCCCC
Q 003788 157 DLWFDFMADT-GDGGNSS-YSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPS 214 (795)
Q Consensus 157 ~~wFd~VaDt-GDG~~st-Y~VA~llAq~~L~~~~~~~~~~lPrgdfLvlgGDlvYp~gs 214 (795)
.+-|...||+ |+|+... |+..+-|++. .+||+||.||-+|-.|-
T Consensus 139 ~i~~~~fa~ascQ~~~~gy~~aY~~ma~~--------------~~D~viH~GDyIYeyg~ 184 (522)
T COG3540 139 AIRFVWFADASCQGWEIGYMTAYKTMAKE--------------EPDFVIHLGDYIYEYGP 184 (522)
T ss_pred cchhhhhhhccccccccchhHHHHHHHhc--------------CCCEEEEcCCeeeccCC
Confidence 4556666666 5554443 4566666663 27999999999998754
No 87
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=84.03 E-value=1.4 Score=44.83 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=13.2
Q ss_pred CCccEEEEcccccCCCCC
Q 003788 197 PRGDVLLIGGDLAYPNPS 214 (795)
Q Consensus 197 PrgdfLvlgGDlvYp~gs 214 (795)
+..|.+|++||++--++.
T Consensus 23 ~~~d~li~lGD~vdrg~~ 40 (225)
T cd00144 23 PPNDKLIFLGDYVDRGPD 40 (225)
T ss_pred CCCCEEEEECCEeCCCCC
Confidence 346889999998765443
No 88
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=83.78 E-value=1.3 Score=46.67 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=13.2
Q ss_pred CCccEEEEcccccCCCC
Q 003788 197 PRGDVLLIGGDLAYPNP 213 (795)
Q Consensus 197 PrgdfLvlgGDlvYp~g 213 (795)
.++|.|+++||+.....
T Consensus 57 ~~~d~vIi~GDl~h~~~ 73 (225)
T TIGR00024 57 YGIEALIINGDLKHEFK 73 (225)
T ss_pred cCCCEEEEcCccccccC
Confidence 35789999999986544
No 89
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=83.63 E-value=14 Score=38.52 Aligned_cols=131 Identities=13% Similarity=0.056 Sum_probs=65.3
Q ss_pred CCcEEEeCCCCCCCCChhHHHHHhh--cccc---CC-ccccCCCcceEEEECCCc-EEEEEEecCCCCCCC---------
Q 003788 260 GPQCYIIPGNHDWFDGLNTFMRFIC--HKSW---LG-GWFMPQKKSYFALQLPKG-WWVFGLDLALHCDID--------- 323 (795)
Q Consensus 260 ~P~ifAIPGNHDwyDGL~~F~r~F~--~~~~---~g-Gw~~pQ~~SYfAl~Lp~~-wwLlgLDsql~~dID--------- 323 (795)
+..+..+-+||++=-|.+++.+..- ++.. .+ |-...+...|..++.+.. .=++|+-+.......
T Consensus 77 G~d~~tlaNNH~fD~G~~gl~~t~~~l~~~~i~~~g~~~~~~~~~~~~i~~~~g~kVg~ig~t~~~~~~~~~~~~~~~~~ 156 (239)
T cd07381 77 GFDVVSLANNHTLDYGEEGLLDTLDALDEAGIAHAGAGRNLEEARRPAILEVNGIKVAFLAYTYGTNGIPLAAGARPGGV 156 (239)
T ss_pred CCCEEEcccccccccchHHHHHHHHHHHHcCCceeECCCCHHHhcCcEEEEECCEEEEEEEEECCCCCCcCcccCCcccc
Confidence 5557777789998666666665431 1111 11 111111123545555431 456666543222111
Q ss_pred -HHHHHHHHHHHHhhcCCCCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCCcceee
Q 003788 324 -VYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSY 395 (795)
Q Consensus 324 -~~Q~~wf~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY~R~~~ 395 (795)
..-.+-+.+.+++..+..|-||+++|--. +. ...+ ......+.+++....+++++.||.|..+..+.
T Consensus 157 ~~~~~~~~~~~i~~lr~~~D~vIv~~H~G~---e~-~~~p-~~~~~~la~~l~~~G~D~IiG~H~Hv~q~~E~ 224 (239)
T cd07381 157 NPLDLERIAADIAEAKKKADIVIVSLHWGV---EY-SYYP-TPEQRELARALIDAGADLVIGHHPHVLQGIEI 224 (239)
T ss_pred CccCHHHHHHHHHHHhhcCCEEEEEecCcc---cC-CCCC-CHHHHHHHHHHHHCCCCEEEcCCCCcCCCeEE
Confidence 00012233333221123688999999422 11 0111 12223444555455799999999999888765
No 90
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=83.03 E-value=25 Score=36.83 Aligned_cols=52 Identities=13% Similarity=0.072 Sum_probs=32.6
Q ss_pred CCCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCCcceeec
Q 003788 340 ERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYV 396 (795)
Q Consensus 340 ~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY~R~~~~ 396 (795)
..|-||+++|--.-.. ..++ ...+.+.+++....++++++||.|..+..+..
T Consensus 172 ~~D~vIv~~H~G~e~~----~~p~-~~~~~~A~~l~~~G~DvIiG~H~H~~~~~e~~ 223 (239)
T smart00854 172 KADVVIVSLHWGVEYQ----YEPT-DEQRELAHALIDAGADVVIGHHPHVLQPIEIY 223 (239)
T ss_pred cCCEEEEEecCccccC----CCCC-HHHHHHHHHHHHcCCCEEEcCCCCcCCceEEE
Confidence 3588999998654211 1111 12234445554457999999999988877644
No 91
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=82.92 E-value=54 Score=35.85 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=32.1
Q ss_pred HHHHHHHhhcCCCCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCC
Q 003788 329 FFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHH 389 (795)
Q Consensus 329 wf~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHh 389 (795)
-.++++++.....|-|||..|.-. ......+..++.+||++++.-|+|=
T Consensus 132 ~~d~~i~~lk~~~d~IIVd~Haea------------tsEK~a~~~~ldg~vsaVvGtHtHV 180 (266)
T TIGR00282 132 VLKELINMLKKDCDLIFVDFHAET------------TSEKNAFGMAFDGYVTAVVGTHTHV 180 (266)
T ss_pred HHHHHHHhhhcCCCEEEEEeCCCC------------HHHHHHHHHHhCCCccEEEeCCCCC
Confidence 344454422223578999999654 1123345666788999999999994
No 92
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=80.04 E-value=22 Score=43.06 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=27.9
Q ss_pred CCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCCc
Q 003788 341 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 391 (795)
Q Consensus 341 ~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY~ 391 (795)
-|-||+++|...-... + .+...+....++++ ..|+++|+||.|..-
T Consensus 196 aDvII~LsH~G~~~d~-~--~~~~en~~~~l~~v--~gID~Il~GHsH~~~ 241 (626)
T TIGR01390 196 ADIIVALAHSGISADP-Y--QPGAENSAYYLTKV--PGIDAVLFGHSHAVF 241 (626)
T ss_pred CCEEEEEeccCcCCCc-c--ccccchHHHHHhcC--CCCCEEEcCCCCccC
Confidence 4889999998764321 1 11122222333443 469999999999753
No 93
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=79.82 E-value=2.1 Score=45.80 Aligned_cols=80 Identities=26% Similarity=0.221 Sum_probs=47.1
Q ss_pred EEEEEeecCCCCCChh----------HHHHHhcCcccccccCCCCcccCCccEEEEcccccCCCCChhhhhhccccchhh
Q 003788 159 WFDFMADTGDGGNSSY----------SVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEY 228 (795)
Q Consensus 159 wFd~VaDtGDG~~stY----------~VA~llAq~~L~~~~~~~~~~lPrgdfLvlgGDlvYp~gs~e~Y~~rf~~Pye~ 228 (795)
.-.++||+-=|+...+ +-.++...-. +-...-+++-||+.||+--..+-....+..+++-+..
T Consensus 21 ~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~-------~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~ 93 (235)
T COG1407 21 RTLVVADLHLGYEESLARRGINLPRYQTDRILKRLD-------RIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLE 93 (235)
T ss_pred cEEEEEecccchhHHHHhcCcccCchhHHHHHHHHH-------HHHHhcCCCEEEEcCccccccCccccccHHHHHHHHH
Confidence 5678999966666555 2222211110 0001235678999999776655444556666555555
Q ss_pred hcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCC
Q 003788 229 ALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWF 273 (795)
Q Consensus 229 Al~~~~~~~~~~i~~~~p~~p~~~~~l~~~~~P~ifAIPGNHDwy 273 (795)
++. ...+..|+||||=+
T Consensus 94 ~~~----------------------------~~evi~i~GNHD~~ 110 (235)
T COG1407 94 LLD----------------------------EREVIIIRGNHDNG 110 (235)
T ss_pred Hhc----------------------------cCcEEEEeccCCCc
Confidence 431 22499999999963
No 94
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=78.71 E-value=26 Score=45.45 Aligned_cols=48 Identities=15% Similarity=0.028 Sum_probs=29.0
Q ss_pred CCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCCcc
Q 003788 341 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMR 392 (795)
Q Consensus 341 ~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY~R 392 (795)
-|-||+++|-..=...... ........+.++. ..++++|+||.|....
T Consensus 235 aDvII~l~H~G~~~~~~~~--~~en~~~~la~~~--~gID~Il~GHsH~~~~ 282 (1163)
T PRK09419 235 ADVIVALAHSGIESEYQSS--GAEDSVYDLAEKT--KGIDAIVAGHQHGLFP 282 (1163)
T ss_pred CCEEEEEeccCcCCCCCCC--CcchHHHHHHHhC--CCCcEEEeCCCccccc
Confidence 4889999998764322110 0112222344443 4699999999998654
No 95
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=77.90 E-value=1.6 Score=50.84 Aligned_cols=57 Identities=28% Similarity=0.553 Sum_probs=35.0
Q ss_pred cCCccEEEEccccc-----CCCCChhhhhhccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCC
Q 003788 196 LPRGDVLLIGGDLA-----YPNPSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNH 270 (795)
Q Consensus 196 lPrgdfLvlgGDlv-----Yp~gs~e~Y~~rf~~Pye~Al~~~~~~~~~~i~~~~p~~p~~~~~l~~~~~P~ifAIPGNH 270 (795)
-+|-..++++||+| ||+-+.+-...--+++|+.+-. .. +..| ..+.++++||||
T Consensus 260 a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~--------~L----~~vp---------~~I~v~i~PGnh 318 (481)
T COG1311 260 ASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAE--------FL----DQVP---------EHIKVFIMPGNH 318 (481)
T ss_pred ccceEEEEEecccccccccccCcccccccccchHHHHHHHH--------HH----hhCC---------CCceEEEecCCC
Confidence 35678899999985 7765544343433455665421 10 1112 346799999999
Q ss_pred CCC
Q 003788 271 DWF 273 (795)
Q Consensus 271 Dwy 273 (795)
|--
T Consensus 319 Da~ 321 (481)
T COG1311 319 DAV 321 (481)
T ss_pred Ccc
Confidence 964
No 96
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=76.63 E-value=3.3 Score=45.02 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=25.7
Q ss_pred EEEEeecCCCCCChhHHHHHhcCcccccccCCCCcccCCccEEEEcccccCCCCCh
Q 003788 160 FDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSA 215 (795)
Q Consensus 160 Fd~VaDtGDG~~stY~VA~llAq~~L~~~~~~~~~~lPrgdfLvlgGDlvYp~gs~ 215 (795)
..+|||.=.- -.+..+++++-.. .+..|.|+++||++--++..
T Consensus 3 ~~vIGDIHG~---~~~l~~ll~~~~~----------~~~~D~li~lGDlVdrGp~s 45 (275)
T PRK00166 3 TYAIGDIQGC---YDELQRLLEKIDF----------DPAKDTLWLVGDLVNRGPDS 45 (275)
T ss_pred EEEEEccCCC---HHHHHHHHHhcCC----------CCCCCEEEEeCCccCCCcCH
Confidence 5678888321 1234445544211 13568899999998866644
No 97
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=75.45 E-value=27 Score=43.57 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=28.2
Q ss_pred CCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCCcc
Q 003788 341 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMR 392 (795)
Q Consensus 341 ~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY~R 392 (795)
-|-||+++|.-.-... +. +...+....++++ ..|+++|+||.|+.-.
T Consensus 245 aDvIIaLsH~G~~~d~-~~--~~~ena~~~l~~v--~gID~IlgGHsH~~~~ 291 (780)
T PRK09418 245 ADVIVALAHSGVDKSG-YN--VGMENASYYLTEV--PGVDAVLMGHSHTEVK 291 (780)
T ss_pred CCEEEEEeccCccccc-cc--ccchhhhHHHhcC--CCCCEEEECCCCCccc
Confidence 4788999998764321 11 1122222223443 4699999999998653
No 98
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=75.22 E-value=3.2 Score=43.26 Aligned_cols=43 Identities=23% Similarity=0.268 Sum_probs=26.4
Q ss_pred EEEEEeec-CCCCCChhHHHHHhcCcccccccCCCCcccCCccEEEEcccccCCCCCh
Q 003788 159 WFDFMADT-GDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSA 215 (795)
Q Consensus 159 wFd~VaDt-GDG~~stY~VA~llAq~~L~~~~~~~~~~lPrgdfLvlgGDlvYp~gs~ 215 (795)
.+.+|+|+ |. ..+..++++.-. . .+..|.++++||++.-++..
T Consensus 16 ri~visDiHg~----~~~l~~~l~~~~--~--------~~~~d~l~~lGD~vdrG~~~ 59 (218)
T PRK09968 16 HIWVVGDIHGE----YQLLQSRLHQLS--F--------CPETDLLISVGDNIDRGPES 59 (218)
T ss_pred eEEEEEeccCC----HHHHHHHHHhcC--C--------CCCCCEEEECCCCcCCCcCH
Confidence 67999999 32 122333333311 0 24578899999999866654
No 99
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=74.09 E-value=31 Score=42.07 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=27.0
Q ss_pred CCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCCc
Q 003788 341 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 391 (795)
Q Consensus 341 ~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY~ 391 (795)
-|-||+++|--.-. +.+. +...+....+.++ ..|+++|.||.|..-
T Consensus 219 aDvII~LsH~G~~~-d~~~--~~aen~~~~l~~v--~gID~Il~GHsH~~~ 264 (649)
T PRK09420 219 ADIVVAIPHSGISA-DPYK--AMAENSVYYLSEV--PGIDAIMFGHSHAVF 264 (649)
T ss_pred CCEEEEEecCCcCC-CCcc--ccccchhHHHhcC--CCCCEEEeCCCCccC
Confidence 47888889886532 2111 1122222223433 359999999999753
No 100
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=72.36 E-value=3.9 Score=42.48 Aligned_cols=43 Identities=26% Similarity=0.266 Sum_probs=26.2
Q ss_pred EEEEEeec-CCCCCChhHHHHHhcCcccccccCCCCcccCCccEEEEcccccCCCCCh
Q 003788 159 WFDFMADT-GDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSA 215 (795)
Q Consensus 159 wFd~VaDt-GDG~~stY~VA~llAq~~L~~~~~~~~~~lPrgdfLvlgGDlvYp~gs~ 215 (795)
.+.+|+|. |.- .+..+++++-. . .++.|-|+++||++=-++..
T Consensus 18 ri~vigDIHG~~----~~L~~lL~~i~--~--------~~~~D~li~lGDlvDrGp~s 61 (218)
T PRK11439 18 HIWLVGDIHGCF----EQLMRKLRHCR--F--------DPWRDLLISVGDLIDRGPQS 61 (218)
T ss_pred eEEEEEcccCCH----HHHHHHHHhcC--C--------CcccCEEEEcCcccCCCcCH
Confidence 57899999 321 23444444421 1 14578899999988555544
No 101
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=71.27 E-value=4 Score=42.61 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=12.4
Q ss_pred CccEEEEcccccCCCCCh
Q 003788 198 RGDVLLIGGDLAYPNPSA 215 (795)
Q Consensus 198 rgdfLvlgGDlvYp~gs~ 215 (795)
..|.||++||++=-++..
T Consensus 33 ~~d~lvflGD~IDRGp~S 50 (222)
T cd07413 33 PERQVVFLGDLIDRGPEI 50 (222)
T ss_pred CCCEEEEeCcccCCCCCH
Confidence 457899999976334433
No 102
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=70.05 E-value=5.6 Score=42.91 Aligned_cols=19 Identities=37% Similarity=0.599 Sum_probs=14.7
Q ss_pred CCccEEEEcccccCCCCCh
Q 003788 197 PRGDVLLIGGDLAYPNPSA 215 (795)
Q Consensus 197 PrgdfLvlgGDlvYp~gs~ 215 (795)
|..|.|+++||+|--++..
T Consensus 25 ~~~D~Li~lGDlVdRGp~s 43 (257)
T cd07422 25 PAKDRLWLVGDLVNRGPDS 43 (257)
T ss_pred CCCCEEEEecCcCCCCcCH
Confidence 4568999999988766544
No 103
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=67.60 E-value=10 Score=40.64 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=17.9
Q ss_pred CcEEEeCCCCCCCCChhHHHHHhhc
Q 003788 261 PQCYIIPGNHDWFDGLNTFMRFICH 285 (795)
Q Consensus 261 P~ifAIPGNHDwyDGL~~F~r~F~~ 285 (795)
+.++.|||| .|+..|..-|++
T Consensus 3 ~li~~IPGN----PGlv~fY~~Fl~ 23 (266)
T PF10230_consen 3 PLIVFIPGN----PGLVEFYEEFLS 23 (266)
T ss_pred EEEEEECCC----CChHHHHHHHHH
Confidence 469999999 899999888864
No 104
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=63.09 E-value=61 Score=40.72 Aligned_cols=46 Identities=22% Similarity=0.231 Sum_probs=26.1
Q ss_pred CCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCCc
Q 003788 341 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 391 (795)
Q Consensus 341 ~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY~ 391 (795)
-|-||+++|.-.-. +.+.. ...+....+.++ ..|+++|+||.|..-
T Consensus 310 aDvIIaLsH~G~~~-d~~~~--~~En~~~~LA~v--~GIDaIvgGHsH~~~ 355 (814)
T PRK11907 310 ADIVLVLSHSGIGD-DQYEV--GEENVGYQIASL--SGVDAVVTGHSHAEF 355 (814)
T ss_pred CCEEEEEeCCCccc-ccccc--cccchhhHHhcC--CCCCEEEECCCCCcc
Confidence 47788888876532 22111 112222223332 359999999999743
No 105
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=60.66 E-value=36 Score=35.95 Aligned_cols=134 Identities=13% Similarity=0.094 Sum_probs=72.6
Q ss_pred CCCcEEEeCCCCCCCCChhHHHHHh---hccc--cCC-ccccCCCcceEEEECCCc-EEEEEEecCCCCC----------
Q 003788 259 DGPQCYIIPGNHDWFDGLNTFMRFI---CHKS--WLG-GWFMPQKKSYFALQLPKG-WWVFGLDLALHCD---------- 321 (795)
Q Consensus 259 ~~P~ifAIPGNHDwyDGL~~F~r~F---~~~~--~~g-Gw~~pQ~~SYfAl~Lp~~-wwLlgLDsql~~d---------- 321 (795)
-+..++.+--||-+=-|.+++.+.. -+.. +.| |....+.+.+..++.+.. .-+++.-......
T Consensus 74 ~G~d~vslANNH~~D~G~~gl~~Tl~~L~~~gi~~~Gag~~~~~a~~p~i~~~~g~kia~l~~t~~~~~~~~~~~~~~~~ 153 (250)
T PF09587_consen 74 AGFDVVSLANNHIFDYGEEGLLDTLEALDKAGIPYVGAGRNLEEARRPAIIEVNGVKIAFLGYTDGENGYSSANGNRPYG 153 (250)
T ss_pred cCCCEEEecCCCCccccHHHHHHHHHHHHHCCCcEeECcCChHHhcCeEEEEECCEEEEEEEEEcCCCCCcccccccccc
Confidence 3566888989996544555555433 2221 233 233333334455666432 3345544322110
Q ss_pred -----------CCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCC
Q 003788 322 -----------IDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHY 390 (795)
Q Consensus 322 -----------ID~~Q~~wf~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY 390 (795)
..+++.+.+.+.+++..+..|-|||+.|- ..... ..+ ....+.+.++++...+++++.+|.|..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~i~~~i~~~r~~~D~vIv~~Hw-G~e~~---~~p-~~~q~~~a~~lidaGaDiIiG~HpHv~ 228 (250)
T PF09587_consen 154 FSYRPDKAGLNPNRPGIERIKEDIREARKKADVVIVSLHW-GIEYE---NYP-TPEQRELARALIDAGADIIIGHHPHVI 228 (250)
T ss_pred ccccccccccccccchHHHHHHHHHHHhcCCCEEEEEecc-CCCCC---CCC-CHHHHHHHHHHHHcCCCEEEeCCCCcc
Confidence 01233466666665433557899999996 21111 112 223334555555557999999999988
Q ss_pred cceeecC
Q 003788 391 MRHSYVP 397 (795)
Q Consensus 391 ~R~~~~~ 397 (795)
|..+...
T Consensus 229 q~~E~y~ 235 (250)
T PF09587_consen 229 QPVEIYK 235 (250)
T ss_pred cceEEEC
Confidence 8887553
No 106
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=54.70 E-value=9.9 Score=40.27 Aligned_cols=51 Identities=20% Similarity=0.230 Sum_probs=27.7
Q ss_pred EEEEEeec-CCCCCChhHHHHHhcCcccccccCCCCcccCCccEEEEcccccCCCCCh
Q 003788 159 WFDFMADT-GDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSA 215 (795)
Q Consensus 159 wFd~VaDt-GDG~~stY~VA~llAq~~L~~~~~~~~~~lPrgdfLvlgGDlvYp~gs~ 215 (795)
.+.+|||. |. -....+++.+-...... +....|..|.||++||++=-++..
T Consensus 2 ~~~vIGDIHG~----~~~L~~lL~~~~~~~~~--~~~~~~~~d~li~lGDliDRGp~S 53 (245)
T PRK13625 2 KYDIIGDIHGC----YQEFQALTEKLGYNWSS--GLPVHPDQRKLAFVGDLTDRGPHS 53 (245)
T ss_pred ceEEEEECccC----HHHHHHHHHHcCCCccc--CcccCCCCCEEEEECcccCCCcCh
Confidence 36789999 32 12355555542221100 101125568899999977655543
No 107
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=54.41 E-value=14 Score=41.07 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=15.4
Q ss_pred CccEEEEcccccCCCCChhhhhhcc
Q 003788 198 RGDVLLIGGDLAYPNPSAFTYERRL 222 (795)
Q Consensus 198 rgdfLvlgGDlvYp~gs~e~Y~~rf 222 (795)
..+.+|++||++=-++...+..+.+
T Consensus 34 ~~~~iVfLGDyVDRGPdS~eVld~L 58 (304)
T cd07421 34 ASALVIFLGDYCDRGPETRKVIDFL 58 (304)
T ss_pred CCcEEEEeCCcCCCCCCHHHHHHHH
Confidence 4567999999665555443333333
No 108
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=51.39 E-value=13 Score=39.01 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=13.9
Q ss_pred CccEEEEcccccCCCCCh
Q 003788 198 RGDVLLIGGDLAYPNPSA 215 (795)
Q Consensus 198 rgdfLvlgGDlvYp~gs~ 215 (795)
..|.++++||++--++..
T Consensus 37 ~~d~lv~lGDlIDrG~~s 54 (234)
T cd07423 37 EGRRAVFVGDLVDRGPDS 54 (234)
T ss_pred CCCEEEEECCccCCCCCH
Confidence 468899999988765544
No 109
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=46.10 E-value=69 Score=38.74 Aligned_cols=124 Identities=20% Similarity=0.252 Sum_probs=72.2
Q ss_pred cCCCCcEEEeCCCCCCCCC----hhH--HHHHhhccccC------Cc--cccCCCcceEEEECCCcEEEEEEec-----C
Q 003788 257 QYDGPQCYIIPGNHDWFDG----LNT--FMRFICHKSWL------GG--WFMPQKKSYFALQLPKGWWVFGLDL-----A 317 (795)
Q Consensus 257 ~~~~P~ifAIPGNHDwyDG----L~~--F~r~F~~~~~~------gG--w~~pQ~~SYfAl~Lp~~wwLlgLDs-----q 317 (795)
.|+.+ ..|||+.|.+ +.- |...+..+-.. .+ =..|--.+|+.+-.+++..+..+.. +
T Consensus 122 ~yD~l----~lGNHEl~~~~ve~l~~~~f~~~~k~~~la~Nv~~~~~~~~~~p~~~~~~t~~t~~~~~v~~vG~~~~~f~ 197 (602)
T KOG4419|consen 122 PYDIL----TLGNHELYQANVENLTEEYFLPAWKGPYLASNVQIFDSSNSFVPFGLEYATFLTPHGVVVLAVGFLCASFS 197 (602)
T ss_pred ccchh----hhcchhhhhhhhhccchhhhhhhhccceeecceEEecCchhhccccccceEEeccCceEEEEEEEeecccc
Confidence 34556 7899999876 211 33333222111 11 1123334688899999866655433 2
Q ss_pred CC-CCC-C-----HHHHHHHHHHHHhhcCCCCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeE-EEcCccC-
Q 003788 318 LH-CDI-D-----VYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKL-RIAGDMH- 388 (795)
Q Consensus 318 l~-~dI-D-----~~Q~~wf~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L-~LAGHiH- 388 (795)
.+ .+. + -.|.+|..+.++. +.-+-+|++.|-|.=... ...++-..|++..+ .+++ +|.||.|
T Consensus 198 ~~~n~~~v~~veei~~~~~~~~m~~~--~~idlii~lgH~~~~~~~------e~~~~~~~ir~~~p-~t~IqviGGHshi 268 (602)
T KOG4419|consen 198 GAANRTVVVPVEEITQSEWEQDMVNT--TDIDLIIALGHSPVRDDD------EWKSLHAEIRKVHP-NTPIQVIGGHSHI 268 (602)
T ss_pred ccCCCcccccHHHHhccchHHHHhhc--cCccEEEEecccccccch------hhhhHHHHHhhhCC-CCceEEECchhhh
Confidence 11 111 1 2588899998863 566888888888873322 23444445566543 3455 9999999
Q ss_pred -CCcce
Q 003788 389 -HYMRH 393 (795)
Q Consensus 389 -hY~R~ 393 (795)
.|.++
T Consensus 269 rd~a~~ 274 (602)
T KOG4419|consen 269 RDFAVY 274 (602)
T ss_pred hhhhhc
Confidence 66775
No 110
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=45.71 E-value=2.5e+02 Score=34.00 Aligned_cols=51 Identities=31% Similarity=0.401 Sum_probs=33.3
Q ss_pred CCceEEEEEeecCC---------CCCChhHHHHHh--cCcccccccCCCCcccCCccEEEEcccccCCC-CChhhh
Q 003788 155 KEDLWFDFMADTGD---------GGNSSYSVARLL--AQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPN-PSAFTY 218 (795)
Q Consensus 155 ~~~~wFd~VaDtGD---------G~~stY~VA~ll--Aq~~L~~~~~~~~~~lPrgdfLvlgGDlvYp~-gs~e~Y 218 (795)
++.+.+.+-.|.-= |.||--+...+| ||. .+-|+|++|||+.--+ ||.+..
T Consensus 11 entirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e-------------~~VDmiLlGGDLFHeNkPSr~~L 73 (646)
T KOG2310|consen 11 ENTIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQE-------------NDVDMILLGGDLFHENKPSRKTL 73 (646)
T ss_pred ccceEEEEeecCccccccCCcccccchHHHHHHHHHHHHh-------------cCCcEEEecCcccccCCccHHHH
Confidence 56788888888722 334444555553 332 3579999999987765 666544
No 111
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=43.48 E-value=31 Score=37.48 Aligned_cols=55 Identities=18% Similarity=0.174 Sum_probs=29.5
Q ss_pred EEEEeecCCCCCChhHHHHHhcCcccccccCCCC--cccCCccEEEEcccccCCCCC
Q 003788 160 FDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSV--FTLPRGDVLLIGGDLAYPNPS 214 (795)
Q Consensus 160 Fd~VaDtGDG~~stY~VA~llAq~~L~~~~~~~~--~~lPrgdfLvlgGDlvYp~gs 214 (795)
+.+|+|++=|.+.....+-.+-+..|.-..++.. ..-.+-.-||+.||.+-+.+.
T Consensus 2 i~~vSgL~ig~~~~~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~ 58 (257)
T cd07387 2 IALVSGLGLGGNAESSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQ 58 (257)
T ss_pred EEEEcccccCCCccchHHHHHHHHHhcCCCCCccccccccceEEEEEECCccccccc
Confidence 5688999766665444443333333331111010 112244569999999887653
No 112
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=40.43 E-value=21 Score=39.28 Aligned_cols=19 Identities=37% Similarity=0.651 Sum_probs=15.3
Q ss_pred CCccEEEEcccccCCCCCh
Q 003788 197 PRGDVLLIGGDLAYPNPSA 215 (795)
Q Consensus 197 PrgdfLvlgGDlvYp~gs~ 215 (795)
|..|-++++||+|--++..
T Consensus 27 ~~~D~l~~lGDlVdRGP~s 45 (279)
T TIGR00668 27 PGQDTLWLTGDLVARGPGS 45 (279)
T ss_pred CCCCEEEEeCCccCCCCCH
Confidence 4567899999999887765
No 113
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=32.34 E-value=21 Score=32.94 Aligned_cols=31 Identities=26% Similarity=0.560 Sum_probs=24.6
Q ss_pred ceEEeeecccCCCCCCCccchhHHHHHHHHH
Q 003788 27 KWVIYGELGNDNGGSSDEISPIYSLWATFIG 57 (795)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (795)
+|++|.|+++.....--.+++|-+.|+..++
T Consensus 81 ~~vvy~e~~~t~k~y~~~~t~I~~~wl~~~~ 111 (114)
T PF07717_consen 81 KWVVYHELVRTSKPYMRDVTAISPEWLLLFA 111 (114)
T ss_dssp SEEEEEEEEESSSEEEEEEEE--HHHHHHH-
T ss_pred ccchhhhheecCCcEEEECcCCCHHHHHHHc
Confidence 6999999999887777789999999987664
No 114
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=28.73 E-value=41 Score=38.62 Aligned_cols=25 Identities=28% Similarity=0.595 Sum_probs=21.9
Q ss_pred CCCceEEEEEeecCCCCCChhHHHH
Q 003788 154 EKEDLWFDFMADTGDGGNSSYSVAR 178 (795)
Q Consensus 154 ~~~~~wFd~VaDtGDG~~stY~VA~ 178 (795)
+.+++.+|.+.|.|.|-+++++=|.
T Consensus 43 ~Sedv~IDLLTDSGTgams~~qwaa 67 (471)
T COG3033 43 DSEDVFIDLLTDSGTGAMTDKQWAA 67 (471)
T ss_pred cccceEEEeeccCCcccccHHHHHH
Confidence 4678999999999999999987665
No 115
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=27.30 E-value=1.2e+02 Score=30.75 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=24.1
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCC
Q 003788 311 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPN 352 (795)
Q Consensus 311 LlgLDsql~~dID~~Q~~wf~~ll~~~v~~~d~VIL~tHeP~ 352 (795)
++.|| .....+|...++.+.+.+.+....+..+|+++|++.
T Consensus 146 llllD-EPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~ 186 (201)
T cd03231 146 LWILD-EPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL 186 (201)
T ss_pred EEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 55566 344556666666777766532333456777777665
No 116
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=26.29 E-value=2.1e+02 Score=30.08 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=41.6
Q ss_pred CCCcEEEeCCCCCCCCChhHHHHHhhccc----cCCccccCCCcceEEEECCCcEEEEEEecCCCCCCCHHHHHHHHHHH
Q 003788 259 DGPQCYIIPGNHDWFDGLNTFMRFICHKS----WLGGWFMPQKKSYFALQLPKGWWVFGLDLALHCDIDVYQFKFFAELV 334 (795)
Q Consensus 259 ~~P~ifAIPGNHDwyDGL~~F~r~F~~~~----~~gGw~~pQ~~SYfAl~Lp~~wwLlgLDsql~~dID~~Q~~wf~~ll 334 (795)
++++++-||||.==|. ..|-+.... +... ....-.||+++.+.. +-+++ +..=..|.+|+.+.+
T Consensus 3 ~g~pVlFIhG~~Gs~~----q~rsl~~~~~~~~~~~~--~~~~~d~ft~df~~~--~s~~~----g~~l~~q~~~~~~~i 70 (225)
T PF07819_consen 3 SGIPVLFIHGNAGSYK----QVRSLASELQRKALLND--NSSHFDFFTVDFNEE--LSAFH----GRTLQRQAEFLAEAI 70 (225)
T ss_pred CCCEEEEECcCCCCHh----HHHHHHHHHhhhhhhcc--CccceeEEEeccCcc--ccccc----cccHHHHHHHHHHHH
Confidence 4566999999853333 333332111 1110 111234667766653 22222 222246777777765
Q ss_pred Hh---h----cCCCCeEEEEecC
Q 003788 335 KE---Q----VGERDSVIIMTHE 350 (795)
Q Consensus 335 ~~---~----v~~~d~VIL~tHe 350 (795)
+. . ..+.++|||+.|.
T Consensus 71 ~~i~~~~~~~~~~~~~vilVgHS 93 (225)
T PF07819_consen 71 KYILELYKSNRPPPRSVILVGHS 93 (225)
T ss_pred HHHHHhhhhccCCCCceEEEEEc
Confidence 41 1 2467899999984
No 117
>PRK00944 hypothetical protein; Provisional
Probab=24.92 E-value=2.5e+02 Score=29.58 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=27.2
Q ss_pred hhhhHHHHHHHHHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcccc
Q 003788 513 LEHSYVSFAGALLLLIVAITFVPSKLSRKKRAMIGVLHVSAHLAAALILMLLLELGVETCIQHKLL 578 (795)
Q Consensus 513 ~~~s~vSl~~~l~~~~~~~~fa~~~~~~~~~~~~g~lH~lahl~~a~~~~~~~~~~~e~~i~~~~l 578 (795)
+.+|.+.-++=..+.+.+|.||. |.-.| +++ ++.+..|+..-+.||+++.
T Consensus 126 ~GDSVlNSv~D~~~M~~GF~~A~----rlPv~----------vtv--~lai~fEl~~~~~IRDnLt 175 (195)
T PRK00944 126 YGDSILNSVMDTLAMVLGFLFAA----RLPVW----------LTV--AIAIFFEIFTGWLIRDNLT 175 (195)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH----hhhHH----------HHH--HHHHHHHHHHHHHhccccc
Confidence 34566655555566666666762 11111 222 2223458888888876665
No 118
>KOG4489 consensus Uncharacterized conserved protein BC10 (implicated in bladder cancer in humans) [Function unknown]
Probab=24.73 E-value=39 Score=30.55 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=17.3
Q ss_pred cchhHH-HHHHHHHHHHhhheeee
Q 003788 45 ISPIYS-LWATFIGLYIANYVVER 67 (795)
Q Consensus 45 ~~~~~~-~~~~~~~~~~~~~~~~~ 67 (795)
|.|.+- -=++||++|+.+|++||
T Consensus 17 ~nPal~~~h~mFm~fYlvgFfLER 40 (87)
T KOG4489|consen 17 INPALLVEHAMFMWFYLVGFFLER 40 (87)
T ss_pred CChHHHHHHHHHHHHHHHHHHhcc
Confidence 455432 23789999999999999
No 119
>PF07069 PRRSV_2b: Porcine reproductive and respiratory syndrome virus 2b ; InterPro: IPR009775 This family consists of several Porcine reproductive and respiratory syndrome virus (PRRSV) ORF2b proteins. The function of this family is unknown however it is known that large amounts of 2b protein are present in the virion and it is thought that this protein may be an integral component of the virion [].
Probab=24.30 E-value=5e+02 Score=22.90 Aligned_cols=39 Identities=21% Similarity=0.445 Sum_probs=32.1
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcc
Q 003788 496 GHLRSFFGTVWNAFMYVLEHSYVSFAGALLLLIVAITFV 534 (795)
Q Consensus 496 ~~l~~~~~~~~~~~~~i~~~s~vSl~~~l~~~~~~~~fa 534 (795)
|..++++..+.+.+..-|++=.||.+-.+.++.+.+.|.
T Consensus 2 g~~qslf~kigqlfvdafteflvsivdiiiflailfgft 40 (73)
T PF07069_consen 2 GSMQSLFNKIGQLFVDAFTEFLVSIVDIIIFLAILFGFT 40 (73)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 456788888888999999999999988888877777665
No 120
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.29 E-value=1.5e+02 Score=29.93 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=29.2
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCC
Q 003788 311 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPN 352 (795)
Q Consensus 311 LlgLDsql~~dID~~Q~~wf~~ll~~~v~~~d~VIL~tHeP~ 352 (795)
++.+|- ....+|...++.+.+.+++..+.+..+|+++|++.
T Consensus 129 vlllDE-P~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 129 ILFLDE-PTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred EEEEeC-CCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 677774 45667888788888877643334678889999875
No 121
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=24.06 E-value=74 Score=31.52 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=13.9
Q ss_pred CCccEEEEcccccCCCC
Q 003788 197 PRGDVLLIGGDLAYPNP 213 (795)
Q Consensus 197 PrgdfLvlgGDlvYp~g 213 (795)
+.+|.|+++||++....
T Consensus 41 ~~~d~vi~~GDl~~~~~ 57 (168)
T cd07390 41 GPDDTVYHLGDFSFGGK 57 (168)
T ss_pred CCCCEEEEeCCCCCCCC
Confidence 45799999999988654
No 122
>PF10755 DUF2585: Protein of unknown function (DUF2585); InterPro: IPR019691 This family is conserved in Proteobacteria. The function is not known, but it is thought to be a transmembrane protein. ; GO: 0005886 plasma membrane
Probab=23.99 E-value=2.5e+02 Score=28.87 Aligned_cols=19 Identities=21% Similarity=0.754 Sum_probs=12.8
Q ss_pred hHHHHHHHHHhhhcccccc
Q 003788 466 FIGGIVYFVLVFSMFPQCE 484 (795)
Q Consensus 466 ~i~G~~yfll~~s~~p~~~ 484 (795)
+|=|++++.+.+.++|+..
T Consensus 41 iIHGflFy~l~~l~~~r~~ 59 (165)
T PF10755_consen 41 IIHGFLFYALLWLLLPRWP 59 (165)
T ss_pred HHHHHHHHHHHHHHhccCc
Confidence 4567777777777776654
No 123
>COG2843 PgsA Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]
Probab=23.47 E-value=2.4e+02 Score=32.57 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=45.2
Q ss_pred cCCCCeEEEEecC-CCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCCCcceeecCCCCCcccceEEEecCCCcc
Q 003788 338 VGERDSVIIMTHE-PNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGAF 416 (795)
Q Consensus 338 v~~~d~VIL~tHe-P~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHhY~R~~~~~~~G~~~~~~lIVsGGGGAf 416 (795)
....|-||+..|+ =.|-.+.+ ...+.+-++.....++++..+|-|+-|..+.-. +| .+|+ .+-|.|
T Consensus 221 ~k~adlviv~~HwG~ey~~~p~------~~q~~~a~~lidAGa~iIvGhhpHvlqpiE~~~-~~-----~~I~-YsLGnf 287 (372)
T COG2843 221 KKGADLVIVQPHWGVEYAYEPA------AGQRALARRLIDAGADIIVGHHPHVLQPIEIYI-QG-----KPIL-YSLGNF 287 (372)
T ss_pred hccCCEEEEeccccccccCCCc------HHHHHHHHHHHhcCcCeEecCCCCcCcceEEec-CC-----cEEE-Eeccce
Confidence 4567899999997 66665532 113344455555689999999999999987552 12 2344 777776
Q ss_pred cc
Q 003788 417 LH 418 (795)
Q Consensus 417 Lh 418 (795)
+-
T Consensus 288 ~f 289 (372)
T COG2843 288 LF 289 (372)
T ss_pred ec
Confidence 64
No 124
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=23.41 E-value=1.3e+02 Score=30.47 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=23.5
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCC
Q 003788 311 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPN 352 (795)
Q Consensus 311 LlgLDsql~~dID~~Q~~wf~~ll~~~v~~~d~VIL~tHeP~ 352 (795)
++-||- ....+|...++.+.+.+++..+.+..+|++||++.
T Consensus 158 lllLDE-Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~ 198 (214)
T TIGR02673 158 LLLADE-PTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS 198 (214)
T ss_pred EEEEeC-CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 555563 34556666666666666532233456777777664
No 125
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=23.39 E-value=6e+02 Score=27.94 Aligned_cols=107 Identities=25% Similarity=0.309 Sum_probs=51.7
Q ss_pred eCCCCCCCCChhHHHHHhhcccc-CCccc----cCCCcceEEEECCCcEEEEEEecCC---CCCCCHHHHHHHHHHHHhh
Q 003788 266 IPGNHDWFDGLNTFMRFICHKSW-LGGWF----MPQKKSYFALQLPKGWWVFGLDLAL---HCDIDVYQFKFFAELVKEQ 337 (795)
Q Consensus 266 IPGNHDwyDGL~~F~r~F~~~~~-~gGw~----~pQ~~SYfAl~Lp~~wwLlgLDsql---~~dID~~Q~~wf~~ll~~~ 337 (795)
.-|||=|.. .....++-.... +...+ .|.+ .|..++. ++.-+..+..+- ...+| .-+..+++++++-
T Consensus 61 T~GNH~wdk--kei~~~i~~~~~ilRPaN~p~~~pG~-G~~i~~~-~g~kv~ViNl~Gr~fm~~~~-~PF~~~d~~l~~l 135 (253)
T PF13277_consen 61 TMGNHIWDK--KEIFDFIDKEPRILRPANYPPGTPGR-GYRIFEK-NGKKVAVINLMGRVFMPPID-CPFRAADRLLEEL 135 (253)
T ss_dssp E--TTTTSS--TTHHHHHHH-SSEE--TTS-TT-SSB-SEEEEEE-TTEEEEEEEEE--TTS---S--HHHHHHHHHHH-
T ss_pred ecCcccccC--cHHHHHHhcCCCcEECCCCCCCCCcC-cEEEEEE-CCEEEEEEECcccccCCCCC-ChHHHHHHHHHhc
Confidence 689998852 123333332111 11112 2322 3667777 456676666542 23345 4477888888642
Q ss_pred cCCCCeEEEEecCCCCcccccccCCcchhhHHHHHhhhCCceeEEEcCccCC
Q 003788 338 VGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHH 389 (795)
Q Consensus 338 v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~lie~~l~~rV~L~LAGHiHh 389 (795)
..+.+.+||=.|-= .......+--+|.+||..++.=|+|=
T Consensus 136 ~~~~~~iiVDFHAE------------aTSEK~A~g~~lDGrvsaV~GTHTHV 175 (253)
T PF13277_consen 136 KEETDIIIVDFHAE------------ATSEKQAMGWYLDGRVSAVVGTHTHV 175 (253)
T ss_dssp ----SEEEEEEE-S-------------HHHHHHHHHHHBTTBSEEEEESSSS
T ss_pred cccCCEEEEEeecC------------cHHHHHHHHHHhCCcEEEEEeCCCCc
Confidence 23345555545431 12222334455588999999999993
No 126
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=22.90 E-value=88 Score=29.00 Aligned_cols=45 Identities=18% Similarity=0.491 Sum_probs=36.1
Q ss_pred hcccccccccccccccCCCeeEEEEccCCCeEEEEeecccCCccccc
Q 003788 687 LHLHFDEAFSSLRIANYKAFTRFHINHDGDLEVYTLAVDKVPKEWEL 733 (795)
Q Consensus 687 f~~h~neaFSslrI~dyK~FlR~~I~~dG~L~iy~igvdkVpr~W~~ 733 (795)
|-.+.+|.+-++.+.+-..+.||.+|.||.|+.|..- ..-+.|..
T Consensus 27 fv~~~~e~~~t~~~~~~s~~~r~~ld~~G~l~~~~w~--~~~~~W~~ 71 (110)
T PF00954_consen 27 FVSNNEEVYYTYSLSNSSVLSRLVLDSDGQLQRYIWN--ESTQSWSV 71 (110)
T ss_pred EEECCCeEEEEEecCCCceEEEEEEeeeeEEEEEEEe--cCCCcEEE
Confidence 4477899999999998888999999999999999862 33445543
No 127
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=22.89 E-value=1.6e+02 Score=29.61 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=24.5
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCC
Q 003788 311 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPN 352 (795)
Q Consensus 311 LlgLDsql~~dID~~Q~~wf~~ll~~~v~~~d~VIL~tHeP~ 352 (795)
++.||- ....+|..-.+.+.+.+.+..+.+..+|+++|+|.
T Consensus 148 llllDE-Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 148 LWILDE-PTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred EEEEeC-CCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 666663 34456666666666666532234556777777774
No 128
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=22.49 E-value=1.5e+02 Score=32.26 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=13.4
Q ss_pred HHHhhh-CCceeEEEcCcc
Q 003788 370 LICDYL-KGRCKLRIAGDM 387 (795)
Q Consensus 370 lie~~l-~~rV~L~LAGHi 387 (795)
.+++++ +.++++.+-||.
T Consensus 202 ~~~~Fl~~n~l~~iiR~He 220 (271)
T smart00156 202 AVDEFLKKNNLKLIIRAHQ 220 (271)
T ss_pred HHHHHHHHCCCeEEEecCc
Confidence 345555 568999999996
No 129
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=21.44 E-value=1.6e+02 Score=30.05 Aligned_cols=44 Identities=11% Similarity=0.201 Sum_probs=28.7
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCcc
Q 003788 311 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLL 355 (795)
Q Consensus 311 LlgLDsql~~dID~~Q~~wf~~ll~~~v~~~d~VIL~tHeP~w~~ 355 (795)
++.||- ....+|....+.+.+.+.+..+.+..+|+++|++....
T Consensus 158 llllDE-Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (214)
T PRK13543 158 LWLLDE-PYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAP 201 (214)
T ss_pred EEEEeC-CcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhh
Confidence 666774 44567777777777777543344567888888776554
No 130
>PF14008 Metallophos_C: Iron/zinc purple acid phosphatase-like protein C; PDB: 3KBP_B 1KBP_B 4KBP_C 2QFP_B 2QFR_A 1XZW_B.
Probab=20.92 E-value=56 Score=27.61 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=6.9
Q ss_pred cceEEEecCCCccccc
Q 003788 404 VQHLLVNGCGGAFLHP 419 (795)
Q Consensus 404 ~~~lIVsGGGGAfLhP 419 (795)
+|.+||+|+||+.+.+
T Consensus 2 apVhiv~G~aG~~l~~ 17 (62)
T PF14008_consen 2 APVHIVVGAAGNGLDP 17 (62)
T ss_dssp S-EEEEE--S-T----
T ss_pred CCEEEEECcCCCCccc
Confidence 4578999999995554
No 131
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=20.71 E-value=1.8e+02 Score=29.08 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=24.7
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCC
Q 003788 311 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPN 352 (795)
Q Consensus 311 LlgLDsql~~dID~~Q~~wf~~ll~~~v~~~d~VIL~tHeP~ 352 (795)
++.||- ....+|....+.+.+++.+....+..||+++|.+.
T Consensus 148 llllDE-Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 148 VLLLDE-PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred EEEEcC-CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 666663 34556666666666666532233557777777764
Done!