Your job contains 1 sequence.
>003789
MEYIEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTP
SKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTI
YERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKN
VAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAK
NCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPC
FLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKEL
LMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQ
CSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVV
FPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVE
EYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSG
LRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVD
GFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAV
KSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWC
IHDKLIEIKRGKQRS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 003789
(795 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2006822 - symbol:RDR1 "AT1G14790" species:3702... 2612 1.2e-271 1
TAIR|locus:2136068 - symbol:RDR2 "RNA-dependent RNA polym... 1644 4.5e-169 1
TAIR|locus:2114633 - symbol:RDR6 "AT3G49500" species:3702... 1431 1.7e-146 1
UNIPROTKB|Q8LHH9 - symbol:SHL2 "Probable RNA-dependent RN... 1376 1.1e-140 1
UNIPROTKB|G4NJ50 - symbol:MGG_02748 "RNA-dependent RNA po... 1010 7.7e-102 1
WB|WBGene00004510 - symbol:rrf-3 species:6239 "Caenorhabd... 797 8.8e-84 2
POMBASE|SPAC6F12.09 - symbol:rdp1 "RNA-directed RNA polym... 822 1.7e-81 1
WB|WBGene00004508 - symbol:rrf-1 species:6239 "Caenorhabd... 524 1.9e-68 3
WB|WBGene00004509 - symbol:rrf-2 species:6239 "Caenorhabd... 500 2.9e-66 3
ASPGD|ASPL0000040001 - symbol:rrpC species:162425 "Emeric... 625 4.6e-63 2
DICTYBASE|DDB_G0289659 - symbol:rrpA "RNA-directed RNA po... 566 1.0e-51 2
WB|WBGene00001214 - symbol:ego-1 species:6239 "Caenorhabd... 517 2.2e-47 2
DICTYBASE|DDB_G0291249 - symbol:rrpB "RNA-directed RNA po... 511 3.0e-44 2
ASPGD|ASPL0000071805 - symbol:rrpB species:162425 "Emeric... 220 1.4e-37 4
DICTYBASE|DDB_G0280963 - symbol:rrpC "RNA-directed RNA po... 290 2.5e-29 3
TAIR|locus:2052040 - symbol:AT2G19910 species:3702 "Arabi... 121 2.7e-12 6
TAIR|locus:2052030 - symbol:AT2G19920 species:3702 "Arabi... 117 1.7e-11 6
TAIR|locus:2052020 - symbol:AT2G19930 species:3702 "Arabi... 128 3.8e-07 3
>TAIR|locus:2006822 [details] [associations]
symbol:RDR1 "AT1G14790" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0016441
"posttranscriptional gene silencing" evidence=ISS] [GO:0009615
"response to virus" evidence=IMP] [GO:0009751 "response to
salicylic acid stimulus" evidence=IEP] [GO:0060148 "positive
regulation of posttranscriptional gene silencing" evidence=IMP]
[GO:0000165 "MAPK cascade" evidence=RCA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009617 "response to
bacterium" evidence=RCA] [GO:0009862 "systemic acquired resistance,
salicylic acid mediated signaling pathway" evidence=RCA]
[GO:0009867 "jasmonic acid mediated signaling pathway"
evidence=RCA] [GO:0010310 "regulation of hydrogen peroxide
metabolic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA] [GO:0031348
"negative regulation of defense response" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0010025
"wax biosynthetic process" evidence=IGI] InterPro:IPR007855
Pfam:PF05183 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006952
GO:GO:0010025 GO:GO:0009751 GO:GO:0003723 GO:GO:0009615
GO:GO:0031047 EMBL:AC006917 UniGene:At.70434 GO:GO:0003968
EMBL:AY148431 EMBL:AK228731 EMBL:AJ011977 IPI:IPI00542699
RefSeq:NP_172932.1 UniGene:At.27823 ProteinModelPortal:Q9LQV2
SMR:Q9LQV2 STRING:Q9LQV2 PaxDb:Q9LQV2 PRIDE:Q9LQV2
EnsemblPlants:AT1G14790.1 GeneID:838044 KEGG:ath:AT1G14790
TAIR:At1g14790 eggNOG:NOG307726 HOGENOM:HOG000239464
InParanoid:Q9LQV2 KO:K11699 OMA:YEDYITE PhylomeDB:Q9LQV2
ProtClustDB:CLSN2682981 Genevestigator:Q9LQV2 GO:GO:0060148
PANTHER:PTHR23079 Uniprot:Q9LQV2
Length = 1107
Score = 2612 (924.5 bits), Expect = 1.2e-271, P = 1.2e-271
Identities = 513/789 (65%), Positives = 610/789 (77%)
Query: 4 IEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKV 63
I+H LE LFHL ECCYEP WL ++Y+K++ + SP ++LDDGL+Y+ +V VTP++V
Sbjct: 318 IDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTPARV 377
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYER 123
YFSGPE+++SNRV+R Y I+NFLR+SFVDEDL+K+ S LSP SST +R T +Y+R
Sbjct: 378 YFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDLSPR-SST--QRRTKLYDR 434
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
+ S LR+GIVIGDKKFE LAFS+SQ+++NS WMFA +TAA IR MGDF I+NVAK
Sbjct: 435 IYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAK 494
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCG 243
YAARLGQSF SSRE L+V S +IE+IPDVE+ G Y FSDGIGKISAE A VA+ CG
Sbjct: 495 YAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFARKVARKCG 554
Query: 244 FTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLN 303
T ++PSAFQIRYGGYKGVVAVDP SS KLSLRKSM K++SE+T LD+LA SKYQPC++N
Sbjct: 555 LTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMN 614
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMC 363
RQLITLLSTLG+ D VFEKKQRE V +LDAILT PL+AHEAL LM+ GENTN+LK L++C
Sbjct: 615 RQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEALGLMAPGENTNILKALILC 674
Query: 364 GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA 423
GYKPD EPFL MMLQ FRAS LLELRT+TRIFI GR+MMGCLDET TLE GQV VQ S
Sbjct: 675 GYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSD 734
Query: 424 SRR--REFLDNSCNNRSXXXXXXXXXXXXAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVF 481
R R F+ AKNPCLHPGD+RVL+AV+VP+L+HMVDCVVF
Sbjct: 735 PMRPGRRFI-------------ITGPVVVAKNPCLHPGDVRVLQAVNVPALNHMVDCVVF 781
Query: 482 PAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEE 541
P KG RPH NECSGSDLDGD+YFVCWD EL+PP PMDYTP P ++L D+TIE+VEE
Sbjct: 782 PQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQILDHDVTIEEVEE 841
Query: 542 YFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGL 601
YFA+YIVNDSLG+I NAH AD EP KA S+ C+ELAK + AVDF KTGVAA IP L
Sbjct: 842 YFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPKTGVAAVIPQHL 901
Query: 602 RVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDG 661
V+ YPDFMEK DK YES+ VIGKL+R VK+ APP +IKSFT +VA +SYD DMEVDG
Sbjct: 902 YVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVASKSYDKDMEVDG 961
Query: 662 FEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAVK 721
FE+Y+ +AF K YD +LGNLMDYYGIKTEAEILSG IM M+KSF K+RD E+I AV+
Sbjct: 962 FEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRDAESIGRAVR 1021
Query: 722 SLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCI 781
+L+KE + FN E ++ AKASAWYHV YH SYWG Y E G+NR HFLSF WC+
Sbjct: 1022 ALRKETLSLFNASEEEENES----AKASAWYHVTYHSSYWGLYNE-GLNRDHFLSFAWCV 1076
Query: 782 HDKLIEIKR 790
+DKL+ IK+
Sbjct: 1077 YDKLVRIKK 1085
>TAIR|locus:2136068 [details] [associations]
symbol:RDR2 "RNA-dependent RNA polymerase 2" species:3702
"Arabidopsis thaliana" [GO:0003968 "RNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0016441 "posttranscriptional gene silencing" evidence=ISS]
[GO:0009751 "response to salicylic acid stimulus" evidence=IEP]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA;IMP] [GO:0016458 "gene silencing" evidence=IMP]
[GO:0007267 "cell-cell signaling" evidence=RCA;IMP] [GO:0016246
"RNA interference" evidence=RCA;IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0010495 "long-distance posttranscriptional gene
silencing" evidence=IMP] [GO:0050832 "defense response to fungus"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0010014 "meristem initiation" evidence=RCA]
[GO:0010073 "meristem maintenance" evidence=RCA] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0016569 "covalent chromatin modification"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] InterPro:IPR007855
Pfam:PF05183 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161531
GO:GO:0005730 GO:GO:0050832 GO:GO:0007267 GO:GO:0003723
GO:GO:0030422 EMBL:AF080120 EMBL:AL049876 GO:GO:0010495
GO:GO:0003968 HOGENOM:HOG000239464 KO:K11699
ProtClustDB:CLSN2682981 PANTHER:PTHR23079 IPI:IPI00535843
PIR:T01920 RefSeq:NP_192851.1 UniGene:At.43417
ProteinModelPortal:O82504 SMR:O82504 STRING:O82504 PaxDb:O82504
PRIDE:O82504 EnsemblPlants:AT4G11130.1 GeneID:826714
KEGG:ath:AT4G11130 TAIR:At4g11130 eggNOG:NOG252917
InParanoid:O82504 OMA:SKCAARM PhylomeDB:O82504
Genevestigator:O82504 Uniprot:O82504
Length = 1133
Score = 1644 (583.8 bits), Expect = 4.5e-169, P = 4.5e-169
Identities = 352/800 (44%), Positives = 502/800 (62%)
Query: 8 LETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVAL----DDGLIYVNKVLVTPSKV 63
L+ L CY+PV +++ Q + V ++ SPA A + ++ + VTPSK+
Sbjct: 334 LKKLHQQSSICYDPVFFVKTQMQSVV--KKMKHSPASAYKRLTEQNIMSCQRAYVTPSKI 391
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTN----EERHTT 119
Y GPE+ +N VV+++ + + +F+R++FV+ED KL + LS ++S + T
Sbjct: 392 YLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKLPANALS--VNSKEGYFVKPSRTN 449
Query: 120 IYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIK 179
IY RVLS L GI +G K+FE LAFS SQ++ NS+WMFAS ++ A DIRE MG FR I+
Sbjct: 450 IYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMFASNEKVKAEDIREWMGCFRKIR 509
Query: 180 NVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVA 239
+++K AAR+GQ F +SR+ L V + D+E IPD+EV DG YCFSDGIGKIS A+ VA
Sbjct: 510 SISKCAARMGQLFSASRQTLIVRAQDVEQIPDIEVTTDGADYCFSDGIGKISLAFAKQVA 569
Query: 240 KNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQP 299
+ CG + + PSAFQIRYGGYKGV+AVD +S KLSLR SMLK+ S + L++ ++ P
Sbjct: 570 QKCGLS-HVPSAFQIRYGGYKGVIAVDRSSFRKLSLRDSMLKFDSNNRMLNVTRWTESMP 628
Query: 300 CFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENT-NVLK 358
CFLNR++I LLSTLGI D +FE Q ++ L +L D A L+ +S GEN+ N+L
Sbjct: 629 CFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNMLEDRDAALNVLQKLS-GENSKNLLV 687
Query: 359 ELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVF 418
++L+ GY P EP+L MML+ S L EL++R RI + GR ++GC+DE G LE GQV+
Sbjct: 688 KMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVPKGRILIGCMDEMGILEYGQVY 747
Query: 419 VQCSASRRR-EFLDNSCNNR-SXXXXXXXXXXXXAKNPCLHPGDMRVLRAVDVPSLHHM- 475
V+ + ++ + D S + KNPCLHPGD+RVL A+
Sbjct: 748 VRVTLTKAELKSRDQSYFRKIDEETSVVIGKVVVTKNPCLHPGDIRVLDAIYEVHFEEKG 807
Query: 476 -VDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDM 534
+DC++FP KG+RPH NECSG DLDGD +FV WD ++IP PPMDY + +++ D+
Sbjct: 808 YLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKIIPSEMDPPMDYAGSRPRLMDHDV 867
Query: 535 TIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVA 594
T+E++ ++F DY+++D+LGVI AH+VHAD +P+KARS +CLELA L + AVDF+KTG
Sbjct: 868 TLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARSQKCLELANLHSRAVDFAKTGAP 927
Query: 595 ATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYD 654
A +P L+ +PDF+E+ +K Y S+ V GKLYRAVK A K + +YD
Sbjct: 928 AEMPYALKPREFPDFLERFEKPTYISESVFGKLYRAVKS---SLAQRKPEAESEDTVAYD 984
Query: 655 TDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIM--EMAKSFDKKR- 711
+E GFE +I A ++ Y +L +LM YYG E EIL+G + EM + D +R
Sbjct: 985 VTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYGAANEEEILTGILKTKEMYLARDNRRY 1044
Query: 712 -DL-EAIIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGM 769
D+ + I +VK L KEA WF K E + + + ASAWY+V Y+P++ ++E +
Sbjct: 1045 GDMKDRITLSVKDLHKEAMGWFEKSCEDEQQKKKL---ASAWYYVTYNPNH----RDEKL 1097
Query: 770 NRTHFLSFPWCIHDKLIEIK 789
FLSFPW + D L++IK
Sbjct: 1098 T---FLSFPWIVGDVLLDIK 1114
>TAIR|locus:2114633 [details] [associations]
symbol:RDR6 "AT3G49500" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0016441
"posttranscriptional gene silencing" evidence=TAS] [GO:0030422
"production of siRNA involved in RNA interference" evidence=TAS]
[GO:0048366 "leaf development" evidence=IGI] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=IMP] [GO:0051607 "defense response to virus" evidence=IMP]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IMP] [GO:0009616 "virus induced gene silencing"
evidence=IMP] [GO:0031047 "gene silencing by RNA" evidence=IMP]
[GO:0048440 "carpel development" evidence=IGI] [GO:0048467
"gynoecium development" evidence=IMP] [GO:0048544 "recognition of
pollen" evidence=IMP] InterPro:IPR007855 Pfam:PF05183 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AC012329 GO:GO:0003723
GO:GO:0048440 GO:GO:0048366 GO:GO:0010492 GO:GO:0010267
GO:GO:0048544 GO:GO:0003887 GO:GO:0009616 EMBL:AL132964
GO:GO:0003968 eggNOG:NOG307726 HOGENOM:HOG000239464 KO:K11699
ProtClustDB:CLSN2682981 PANTHER:PTHR23079 EMBL:AF239718
EMBL:AF268093 IPI:IPI00524423 RefSeq:NP_190519.1 UniGene:At.65263
ProteinModelPortal:Q9SG02 SMR:Q9SG02 MINT:MINT-7014695
STRING:Q9SG02 PaxDb:Q9SG02 PRIDE:Q9SG02 EnsemblPlants:AT3G49500.1
GeneID:824112 KEGG:ath:AT3G49500 TAIR:At3g49500 InParanoid:Q9SG02
OMA:SCAEQGN PhylomeDB:Q9SG02 Genevestigator:Q9SG02 Uniprot:Q9SG02
Length = 1196
Score = 1431 (508.8 bits), Expect = 1.7e-146, P = 1.7e-146
Identities = 332/816 (40%), Positives = 481/816 (58%)
Query: 8 LETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVAL-----DDGLIYVNKVLVTPSK 62
+ +L HL C Y+ R + + Y++ L + ++ L + + + ++++TP++
Sbjct: 365 IASLKHL--CTYK--RPVFDAYKRLKLVQEWIQKNPKLLGSHEQSEDISEIRRLVITPTR 420
Query: 63 VYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS----PLI---SSTNEE 115
Y PE+ LSNRV+R Y + FLR++F+DE + + S VLS P++ +S++
Sbjct: 421 AYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSSFS 480
Query: 116 RHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDF 175
+ T +++RV S L +G + +K+ LAFS +Q++D S W FA + +DI+ MG F
Sbjct: 481 QKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMGKF 540
Query: 176 RDIKNVAKYAARLGQSFGSSREALHVDSSDIEI-IPDVEVEDDGITYCFSDGIGKISAEL 234
+D KNVAK AAR+G F S+ + V +++ +PD+E +G Y FSDGIG I+ +L
Sbjct: 541 KD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIE--RNG--YVFSDGIGTITPDL 595
Query: 235 AEIVAKNCGFTI-YTPSAFQIRYGGYKGVVAVDPTSST--KLSLRKSMLKYKSESTSLDI 291
A+ V + + Y+P A+QIRY G+KGVVA P+ S +L+LR SM K+ S+ T L+I
Sbjct: 596 ADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTILEI 655
Query: 292 LANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSG 351
+ +++QP FLNRQ+ITLLS LG+ D +F Q + +L+ IL D A E L S
Sbjct: 656 CSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLTA-SCA 714
Query: 352 ENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGT 411
E N +L G+KP EP L ML + R + L LR ++RIF+ +GR +MGCLDE G
Sbjct: 715 EQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGI 774
Query: 412 LESGQVFVQCSA-SRRREFLDNSCNNRSXXXXXXXXXX--XXAKNPCLHPGDMRVLRAVD 468
LE GQ F+Q S S F + + AKNPCLHPGD+R+L AVD
Sbjct: 775 LEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAVD 834
Query: 469 VPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ--FPPMDYTPAP 526
VP LHHM DC++FP KG RPHTNE SGSDLDGD+YFV WD +LIPP + +P M Y A
Sbjct: 835 VPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAAE 894
Query: 527 EKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAV 586
EK L R + +D+ ++FA + N+ LG ICNAHVVHAD A +CL LA+L+ AV
Sbjct: 895 EKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATAV 954
Query: 587 DFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSF-T 645
DF KTG ++P L+ ++YPDFM K+D Y+S +++G+LYR VK++ A S +
Sbjct: 955 DFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEASSEES 1014
Query: 646 KEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAK 705
+ + YD +E+ GFED I +A+ +K YD +L L+ Y ++ E EI++G I M K
Sbjct: 1015 TDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMPK 1074
Query: 706 SFDKKR-DL-EAIIFAVKSLKKEARAWFNK-----KNESDSSHEDVYAK-ASAWYHVAYH 757
KK+ +L E + + SLKKE R F + +N S+ +Y K ASAWYHV YH
Sbjct: 1075 YTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTYH 1134
Query: 758 PSYWGRYKE--EGMNRTH--FLSFPWCIHDKLIEIK 789
P + + E + +H LSF W D L IK
Sbjct: 1135 PEWVKKSLELQDPDESSHAAMLSFAWIAADYLARIK 1170
>UNIPROTKB|Q8LHH9 [details] [associations]
symbol:SHL2 "Probable RNA-dependent RNA polymerase SHL2"
species:39947 "Oryza sativa Japonica Group" [GO:0010492
"maintenance of shoot apical meristem identity" evidence=IMP]
[GO:0016246 "RNA interference" evidence=IMP] InterPro:IPR007855
Pfam:PF05183 GO:GO:0005634 GO:GO:0016246 GO:GO:0003723
GO:GO:0048440 GO:GO:0048366 GO:GO:0010492 GO:GO:0010267
EMBL:AP008207 GO:GO:0048544 GO:GO:0009616 GO:GO:0003968
eggNOG:NOG307726 HOGENOM:HOG000239464 PANTHER:PTHR23079 OMA:SCAEQGN
EMBL:AB353923 EMBL:AP004357 RefSeq:NP_001043229.1 UniGene:Os.30747
EnsemblPlants:LOC_Os01g34350.1 GeneID:4323938 Gramene:Q8LHH9
ProtClustDB:CLSN2691477 BRENDA:2.7.7.48 Uniprot:Q8LHH9
Length = 1218
Score = 1376 (489.4 bits), Expect = 1.1e-140, P = 1.1e-140
Identities = 311/775 (40%), Positives = 463/775 (59%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS----PL 108
V ++++TP++ Y PE+ SNRV+R Y + D FLR++F+DE + L + VL+ P+
Sbjct: 436 VRRLVITPTRAYCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQVLNNNVLNSFTAPI 495
Query: 109 IS---STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTA 165
+ S ++ TT+Y+RV L G + +K+ LAFS++Q++D S W FA + T
Sbjct: 496 VKDLMSNFFQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTV 555
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSD 225
IR+ MG F KNVAK+AAR+GQ F S+ + + +++ D V ++ Y FSD
Sbjct: 556 EAIRKWMGRFTS-KNVAKHAARMGQCFSSTYATVTMRPDEVDESFDDVVHNE---YIFSD 611
Query: 226 GIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAV--DPTSSTKLSLRKSMLKYK 283
GIGKI+ +LA VA+ T PSA+QIR+ G+KGV+AV T+L LR SM K++
Sbjct: 612 GIGKITPDLALEVAERLQLTDNPPSAYQIRFAGFKGVIAVWQGHGDGTRLFLRPSMRKFE 671
Query: 284 SESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHE 343
S L++++ +K+QP FLNRQ+I LLS+L + D +F + Q ++ L+ IL+D A E
Sbjct: 672 SNHLVLEVVSWTKFQPGFLNRQIIILLSSLNVPDSIFWQMQETMLSNLNNILSDRDVAFE 731
Query: 344 ALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMM 403
L S ++ N +L G++P EP L ML R++ L +L + RIF+ GR +M
Sbjct: 732 VLTT-SCADDGNTAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLLEKARIFVPKGRWLM 790
Query: 404 GCLDETGTLESGQVFVQCSA-SRRREFLDNSCNNRSXXXXXXXXXXXX--AKNPCLHPGD 460
GCLDE G LE GQ F++ + S F+ + S AKNPCLHPGD
Sbjct: 791 GCLDELGVLEQGQCFIRATVPSLNSYFVKHGSRFSSTDKNTEVILGTVVIAKNPCLHPGD 850
Query: 461 MRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP--LQFP 518
+R+L AVDVP LHH+VDC+VFP KG+RPH NE SGSDLDGD+YFV WD +LIPP +
Sbjct: 851 VRILEAVDVPELHHLVDCLVFPQKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKSWN 910
Query: 519 PMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLEL 578
PMDY+P K L R ++ D+ ++F +++++LG ICNAHVVHADL A +C+ L
Sbjct: 911 PMDYSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAMDEKCIHL 970
Query: 579 AKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPT 638
A+L+ AVDF KTG A +P L+ ++YPDFM K+D Y+S++++G+LYR++++ +
Sbjct: 971 AELAATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSIQEAS--N 1028
Query: 639 ATIKSFTKEVAMQS---YDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEI 695
+ S +EV + YD D+EV G D++ A++ K YD +L L+ Y ++TEAE+
Sbjct: 1029 GDVVS--QEVCTPNDLPYDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQYRVRTEAEL 1086
Query: 696 LSGCIMEMAKSFDKKR-DL-EAIIFAVKSLKKEARAWFNK--KNESDSSHED---VYA-K 747
++G I + K+ KK+ D+ + + A +L+KE ++ F ++ + ++ +Y K
Sbjct: 1087 VTGHITFLVKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIGDDEKNLLYEMK 1146
Query: 748 ASAWYHVAYHPSYW-----GRYKEEGMNRTHFLSFPWCIHDKLIEIK---RGKQR 794
ASAWY V YHP W G +G LSF W D L IK GK R
Sbjct: 1147 ASAWYQVTYHPK-WVEKSRGILGPDGEEIPASLSFAWIPVDYLARIKLRCHGKVR 1200
>UNIPROTKB|G4NJ50 [details] [associations]
symbol:MGG_02748 "RNA-dependent RNA polymerase 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR007855 Pfam:PF05183 EMBL:CM001237
GO:GO:0003968 KO:K11699 PANTHER:PTHR23079 RefSeq:XP_003721007.1
EnsemblFungi:MGG_02748T0 GeneID:5050479 KEGG:mgr:MGG_02748
Uniprot:G4NJ50
Length = 1407
Score = 1010 (360.6 bits), Expect = 7.7e-102, P = 7.7e-102
Identities = 239/662 (36%), Positives = 364/662 (54%)
Query: 55 KVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLDKLYSTVLSPLISSTN 113
KV VTPS +Y S P + +NRV+R Y + D FLR+ F DE +L++ P +
Sbjct: 458 KVTVTPSTMYLSSPMVETTNRVLRHYNEHKDRFLRVQFTDELPTGRLHA----PNDLGAD 513
Query: 114 EERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMG 173
+E I+ RV L+NGI IGD+ ++ LAF +SQ+++NS + F ++T IR MG
Sbjct: 514 DE----IFSRVYRVLKNGIHIGDRHYKFLAFGSSQMRENSTYFFCDAGDVTCDSIRAWMG 569
Query: 174 DFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAE 233
F I+NV KYAARLGQ F ++R V I+ IPD+E +G YCF+DG+GKIS+
Sbjct: 570 RFSHIRNVGKYAARLGQCFSTTRSIDRVAMPWIKTIPDIE--KNG--YCFTDGVGKISSL 625
Query: 234 LAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAV-DPTSSTKLSLRKSMLKYKSESTSLDIL 292
A ++++N Y PSAFQ R GG KGV+ V + ++ +R S LK++++ + L+++
Sbjct: 626 WAVVISENLKLD-YIPSAFQFRMGGCKGVLVVWEDVKGQEIHIRPSQLKFETDHSRLEVI 684
Query: 293 ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL-ELMSSG 351
S + LNRQ I++L++LG+++ VFE E +A+ + + D A L + +
Sbjct: 685 RCSHFSVASLNRQTISVLTSLGVKNEVFESMLAEQLAKYNRAMEDATAAMTLLTQYVDEN 744
Query: 352 ENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGT 411
+ TN L L+ G+ EPF+ ML+ +R ++ L+ + R+ ++ G ++GC+DET T
Sbjct: 745 QMTNTLARLVKAGFMESHEPFVCTMLRLWRTWSVKTLKEKARLVVEKGAFVLGCVDETKT 804
Query: 412 LESGQVFVQCSASRRREFLDNSC---------NNRSXXXXXXXXXXXXAKNPCLHPGDMR 462
L + S ++R N + S +NP LHPGD+R
Sbjct: 805 LHGHFTHIPASPNQRPRLNGNMKLPEIFLQVPDGPSRDYKVITGLCLVGRNPSLHPGDIR 864
Query: 463 VLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP-PLQ--FPP 519
V++A+DVP L H+ D VVF G R CSG DLDGD +FV WD L+P P Q + P
Sbjct: 865 VVQAIDVPQLRHIRDVVVFAQTGDRDIPGMCSGGDLDGDDFFVLWDERLLPLPSQRNYKP 924
Query: 520 MDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELA 579
Y P P + L R++T +D+ ++F Y+ N SL I +AH+ AD A+ +CLELA
Sbjct: 925 ASYHPPPARELDREVTADDLCQFFVTYMKNFSLPRIAHAHLAQADKYG--AKDEKCLELA 982
Query: 580 KLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTA 639
L ++AVD+ KTGV A I L +P FMEK + Y S++++GKLY VK + A
Sbjct: 983 YLHSLAVDYPKTGVPAAIRPRLMPNEFPHFMEKA-RGRYHSRKILGKLYDQVKPVNFHPA 1041
Query: 640 TIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGC 699
F ++ + D + +A K KT YD + +M + I TE E+ S
Sbjct: 1042 YEMPFDVKILSLYGELSQHGDLGPKLLREARKLKTLYDQSIMRIMGQHEIATEFEVFSAF 1101
Query: 700 IM 701
++
Sbjct: 1102 VL 1103
Score = 430 (156.4 bits), Expect = 9.9e-37, P = 9.9e-37
Identities = 118/359 (32%), Positives = 177/359 (49%)
Query: 452 KNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHEL 511
+NP LHPGD+RV++A+DVP L H+ D VVF G R CSG DLDGD +FV WD L
Sbjct: 854 RNPSLHPGDIRVVQAIDVPQLRHIRDVVVFAQTGDRDIPGMCSGGDLDGDDFFVLWDERL 913
Query: 512 IP-PLQ--FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPD 568
+P P Q + P Y P P + L R++T +D+ ++F Y+ N SL I +AH+ AD
Sbjct: 914 LPLPSQRNYKPASYHPPPARELDREVTADDLCQFFVTYMKNFSLPRIAHAHLAQADKYG- 972
Query: 569 KARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLY 628
A+ +CLELA L ++AVD+ KTGV A I L +P FMEK + Y S++++GKLY
Sbjct: 973 -AKDEKCLELAYLHSLAVDYPKTGVPAAIRPRLMPNEFPHFMEKA-RGRYHSRKILGKLY 1030
Query: 629 RAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYG 688
VK + A F ++ + D + +A K KT YD + +M +
Sbjct: 1031 DQVKPVNFHPAYEMPFDVKILSLYGELSQHGDLGPKLLREARKLKTLYDQSIMRIMGQHE 1090
Query: 689 IKTEAEILSGCIMEMAKSFDKKRDLEAII----FAVKSLKKEA--RAWFNKKNESDSSHE 742
I TE E+ S ++ ++ + L I+ +K++ +E A +
Sbjct: 1091 IATEFEVFSAFVLS-SRRVGSQYKLGEIVGQQSATLKTVFREKCIAALETVSGRTGIKPR 1149
Query: 743 DVYAKAS---AWYHVAYHPSYWGRY--KEEGMNRTH----FLSFPWCIHDKLIEIKRGK 792
D+ A A Y V + K G+ ++FPW L+++ GK
Sbjct: 1150 DIEAFGPFVVAMYKVTDEEIKIALHECKTRGVKANPKSMPLITFPWIFDQILVQLVTGK 1208
>WB|WBGene00004510 [details] [associations]
symbol:rrf-3 species:6239 "Caenorhabditis elegans"
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007855 Pfam:PF05183 EMBL:Z48334 GO:GO:0003968
PANTHER:PTHR23079 EMBL:Z66500 GeneTree:ENSGT00390000016620
RefSeq:NP_495713.2 IntAct:G5EE53 EnsemblMetazoa:F10B5.7
GeneID:174315 KEGG:cel:CELE_F10B5.7 CTD:174315 WormBase:F10B5.7
OMA:HISKAKI Uniprot:G5EE53
Length = 1765
Score = 797 (285.6 bits), Expect = 8.8e-84, Sum P(2) = 8.8e-84
Identities = 230/707 (32%), Positives = 360/707 (50%)
Query: 43 AVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYS 102
A L + V KV+VTPS++ PE+ + NRVVR + D LR F D++L +L
Sbjct: 669 AKPLPKNCVSVAKVIVTPSRILLMAPEVMMVNRVVRRFGP--DYALRCVFRDDNLGRLAI 726
Query: 103 TVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRP- 161
S I++ + + E + TL+NGI + D+ + L +SNSQ++D +++A R
Sbjct: 727 RDFS--INNI-DHMSNIVTEGIYLTLKNGIQVADRVYSFLGWSNSQMRDQGCYLYAPRVN 783
Query: 162 ----ELTAA--DIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVE-- 213
E+T DIR MGDFRD +V K +R+GQ F ++ + ++ + PD+E
Sbjct: 784 ALTGEVTGTVEDIRVWMGDFRDAISVPKMMSRMGQCFTQAQPTVRLERHHWIVEPDIEGG 843
Query: 214 VEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT----- 268
VE+ YCFSDG G+IS +LA ++K P+ FQ+R+ G+KG++ +DPT
Sbjct: 844 VENK---YCFSDGCGRISIKLATHISKILQLK-EVPACFQVRFKGFKGILVIDPTIDDII 899
Query: 269 SSTKLSLRKSMLKYKSESTSL--DILANSKY---QPCFLNRQLITLLSTLG--------- 314
+ K+ RKS K+ L + L KY P LNR IT+L +
Sbjct: 900 NMPKVIFRKSQQKFGEGGGELQDEYLEVVKYAMPSPVCLNRPFITILDQVSEKQSASSHR 959
Query: 315 -IRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFL 373
I + V +RE + + ++ + A E + + + N + G++ V+P +
Sbjct: 960 RITNRVHYYLERELCSLSNMLINENQAAEELVNRTNLAIDWNAASK--RAGFELSVDPLI 1017
Query: 374 LMMLQTFRASNLLELRTRTRIFIQN--GRAMMGCLDETGTLESGQVFVQCSASRRREFLD 431
ML + N++ ++ +IF+ GR+M G +DETG L+ GQVF+Q S S R+
Sbjct: 1018 RDMLFSIYRYNIIHHISKAKIFLPPSLGRSMYGVVDETGLLQYGQVFIQYSPSIRQT--- 1074
Query: 432 NSCNNRSXXXXXXXXXXXXAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTN 491
+NR KNPC PGD+RV AV P+L H+VD VVFP G RPH +
Sbjct: 1075 ---SNRPILKTGKVLIT---KNPCHVPGDVRVFDAVWQPALAHLVDVVVFPQHGPRPHPD 1128
Query: 492 ECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDS 551
E +GSDLDGD Y + WD E++ M + + ++ T +D+ E+F Y+ DS
Sbjct: 1129 EMAGSDLDGDEYSIIWDQEMLLDYNEEAMVFPSSSAAEEDKEPTTDDMVEFFLRYLQQDS 1188
Query: 552 LGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAAT-IPSGLRVEIYPDFM 610
+G + +AH+ +ADL N C +A +AVDF K+GV A + S + E+ PD+M
Sbjct: 1189 IGRMSHAHLAYADLH-GLFHEN-CHAIALKCAVAVDFPKSGVPAEPLSSFEQCEMTPDYM 1246
Query: 611 EKQDKTCYESQRVIGKLYRA---VKDIAPPTATIKS-FTKEVAMQSYDTDMEVD-GFEDY 665
K Y S R+ G+L+R V+++ T S F +E D++V G E
Sbjct: 1247 MSGGKPMYYSTRLNGQLHRKARKVEEVLEEFETRGSVFEREYDKLICPEDVDVFFGNEIK 1306
Query: 666 ITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRD 712
+ + EY +R+ L+D YGI+ EA ++SG + + +RD
Sbjct: 1307 LVQTLTLRDEYVDRMQQLLDEYGIEDEASVVSGHAASIKRLAGMERD 1353
Score = 86 (35.3 bits), Expect = 8.8e-84, Sum P(2) = 8.8e-84
Identities = 43/157 (27%), Positives = 71/157 (45%)
Query: 656 DMEVD-GFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSG---CIMEMAK------ 705
D++V G E + + EY +R+ L+D YGI+ EA ++SG I +A
Sbjct: 1296 DVDVFFGNEIKLVQTLTLRDEYVDRMQQLLDEYGIEDEASVVSGHAASIKRLAGMERDDY 1355
Query: 706 SF---DKKRDL--EAI--IFAVKSLKKEARAWFNKKNESDSSH----EDVYAKASAWYHV 754
SF DK +L E + +F K ++ N +N+ ++ + ++ K WY V
Sbjct: 1356 SFYHTDKVVELRYEKLYAVFRAKFFEEFGGEEINIENDGKNTRLKCTKAMHEKIRQWYFV 1415
Query: 755 AY-HPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIKR 790
AY P + + G R S PW D L +++R
Sbjct: 1416 AYVQP----KINKAG--RCIGQSLPWVAWDALCDLRR 1446
>POMBASE|SPAC6F12.09 [details] [associations]
symbol:rdp1 "RNA-directed RNA polymerase Rdp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005721 "centromeric heterochromatin" evidence=IDA] [GO:0005724
"nuclear telomeric heterochromatin" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0030702 "chromatin silencing at
centromere" evidence=IMP] [GO:0031047 "gene silencing by RNA"
evidence=IMP] [GO:0031048 "chromatin silencing by small RNA"
evidence=IDA] [GO:0031060 "regulation of histone methylation"
evidence=IMP] [GO:0031380 "nuclear RNA-directed RNA polymerase
complex" evidence=IDA] [GO:0031934 "mating-type region
heterochromatin" evidence=IDA] [GO:0034613 "cellular protein
localization" evidence=IMP] [GO:0045141 "meiotic telomere
clustering" evidence=IMP] [GO:0071276 "cellular response to cadmium
ion" evidence=IMP] [GO:0071585 "detoxification of cadmium ion"
evidence=IMP] InterPro:IPR007855 Pfam:PF05183 PomBase:SPAC6F12.09
GO:GO:0005829 EMBL:CU329670 GO:GO:0034613 GenomeReviews:CU329670_GR
GO:GO:0071276 GO:GO:0071585 GO:GO:0003723 GO:GO:0030702
GO:GO:0000070 GO:GO:0031048 GO:GO:0005721 GO:GO:0031934
GO:GO:0005724 GO:GO:0045141 GO:GO:0031060 GO:GO:0031380
GO:GO:0003968 eggNOG:NOG307726 KO:K11699 PANTHER:PTHR23079
PIR:T11660 RefSeq:NP_593295.1 IntAct:O14227 STRING:O14227
EnsemblFungi:SPAC6F12.09.1 GeneID:2542198 KEGG:spo:SPAC6F12.09
OMA:RISAQNT OrthoDB:EOG44QX81 NextBio:20803268 Uniprot:O14227
Length = 1215
Score = 822 (294.4 bits), Expect = 1.7e-81, P = 1.7e-81
Identities = 210/675 (31%), Positives = 355/675 (52%)
Query: 51 IYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLIS 110
I++ K+ VTP+ + + NRV+R++ D + F+R+ DE Y +
Sbjct: 452 IHIKKLYVTPTTLRIVEDSLEAGNRVIRNFKDFANRFMRVQITDE----YYKQKIR---G 504
Query: 111 STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRE 170
++ R+ +Y R+ L GI +G++ +E LAF NSQ++++ + FAS +L A IRE
Sbjct: 505 GSDGFRNEKLYSRIQQLLTYGIKVGNQIYEFLAFGNSQLREHGAYFFASGSDLNAKQIRE 564
Query: 171 SMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKI 230
MGDF +I +V+KYAAR+GQ F +++E ++ DI + D+ V ++ +CF+DG+G
Sbjct: 565 WMGDFSEINSVSKYAARMGQCFSTTKE-INRFCVDISLQDDI-VRNN---HCFTDGVGMA 619
Query: 231 SAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKL---SL---RKSMLKYKS 284
S + ++ PSAFQ R GGYKGV+++ P + + +L R+S K+KS
Sbjct: 620 SLSVIRRLSLEVKNHDMFPSAFQFRMGGYKGVLSLAPPTKLEYHQGNLVFPRRSQDKFKS 679
Query: 285 ESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEA 344
++L+++ S++ LN QLITLL LG+ VF + R +++++ + K+
Sbjct: 680 FHSTLEVIKISRFSNAHLNMQLITLLEGLGVEKTVFLELTRSQLSKMNESINSKQKSILM 739
Query: 345 L-ELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMM 403
L + + +T ++ + + G+ + F +L + L ++ + ++ + G ++
Sbjct: 740 LRDNVDEYHSTLIIADFIQAGFLERDDAFTENLLNLYYEWVLRLIKEKQKVSVPKGAYLL 799
Query: 404 GCLDETGTLESG---------QVFVQCSASRRREFLDNSCNNRSXXXXXXXXXXXXAKNP 454
G DETGTL+ ++F+Q + + F S + A+NP
Sbjct: 800 GVADETGTLKGHYDDAVLSVPEIFIQITDTST-SF--GSYSTGKLKTRVIVGLCIVARNP 856
Query: 455 CLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP 514
LHPGD+RV +AV L H+ + +VFP G R CSG DLDGD Y V WD L+P
Sbjct: 857 SLHPGDVRVCKAVRCDELMHLKNVIVFPTTGDRSIPAMCSGGDLDGDEYTVIWDQRLLPK 916
Query: 515 L-QFPPMDYTPAPEK---VLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHA---DLEP 567
+ +PP+ +P+K L I+ V+E+F +YI DSLG+I NA A D P
Sbjct: 917 IVNYPPL-LESSPKKSIDFLEGKPLIDSVKEFFVNYIKYDSLGLISNAWKAWAHDHDNNP 975
Query: 568 DKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKL 627
+ N CLELA++ + AVDF+K+GVA + + + YPDFM+K + S+ +GK+
Sbjct: 976 EGIFGNVCLELAEMHSKAVDFAKSGVACKMQAKYHPKRYPDFMQKTKTRSFRSETAVGKI 1035
Query: 628 YRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFE-DYITDAFKYKTEYDNRLGNLMDY 686
+R + ++ + YD M++ F+ +Y+ A + K YDN L ++M
Sbjct: 1036 FRYAARFQRESGRPATYNP-IMNTVYDPCMKLPRFKTEYLNVAEEVKKHYDNDLRSIMAR 1094
Query: 687 YGIKTEAEILSGCIM 701
+ I TE E+ + I+
Sbjct: 1095 FDISTEYEVYTAFIL 1109
>WB|WBGene00004508 [details] [associations]
symbol:rrf-1 species:6239 "Caenorhabditis elegans"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS;IDA] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017151
"DEAD/H-box RNA helicase binding" evidence=IPI] [GO:0005844
"polysome" evidence=IDA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] InterPro:IPR007855 Pfam:PF05183
GO:GO:0005634 GO:GO:0048471 GO:GO:0005844 GO:GO:0030422 EMBL:Z78419
GO:GO:0003968 PANTHER:PTHR23079 UniGene:Cel.19452 GeneID:172523
KEGG:cel:CELE_F26A3.8 CTD:172523 GeneTree:ENSGT00390000016620
EMBL:AF159144 RefSeq:NP_001250555.1 ProteinModelPortal:G5ECM1
EnsemblMetazoa:F26A3.8a WormBase:F26A3.8a OMA:QIQIPKE
NextBio:875887 Uniprot:G5ECM1
Length = 1601
Score = 524 (189.5 bits), Expect = 1.9e-68, Sum P(3) = 1.9e-68
Identities = 158/504 (31%), Positives = 244/504 (48%)
Query: 241 NCGFTIYTPSAFQIR-YGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQP 299
N G P +IR + GV ++ K R S +K+++++ S D + K+
Sbjct: 681 NKGVIAIEPFLDEIRKWALVNGVTSM---KMAKCLFRPSQIKFQAKAISGDQIEMVKFSS 737
Query: 300 CFL---NRQLITLLSTLGIRDHV-FEKKQREGVAQL-DA-ILTDPLKAHEAL----ELMS 349
L N+ I +L + + K+ + +L D IL+ + +E +L
Sbjct: 738 AVLVALNKPFINILDQVSEMQSLDCHKRITSRIEELMDRQILSFAKQMNEETFCRNKLKE 797
Query: 350 SGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQN--GRAMMGCLD 407
++ M G+ EPF +++ ++ + + +I I + GR+M+G +D
Sbjct: 798 FPRRIDIDNLRTMWGFTLSSEPFFRSLIKASIKFSITKQLCKEQIQIPSELGRSMLGVVD 857
Query: 408 ETGTLESGQVFVQCSASRRREFLDNSCNNRSXXXXXXXXXXXXAKNPCLHPGDMRVLRAV 467
ETG L+ GQ+FVQ + + +++ NN+ KNPC+ PGD+R+ AV
Sbjct: 858 ETGRLQYGQIFVQYTKNYKKKLPPRDSNNKVHGSEIVTGTVLLTKNPCIVPGDVRIFEAV 917
Query: 468 DVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPE 527
D+P LHHM D VVFP G RPH +E +GSDLDGD Y V WD EL+ P D+ A E
Sbjct: 918 DIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQELLLERNEEPFDF--AVE 975
Query: 528 KV-LARDMTIEDV--EEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTI 584
K+ + D DV E++ Y+ DS+G I N+H+ ++D S C++LAK +
Sbjct: 976 KIKVPYDREKLDVLMREFYVTYLKLDSVGQISNSHLHNSDQYG--LNSRVCMDLAKKNCQ 1033
Query: 585 AVDFSKTGVAA--------TIPSGLRV------EIYPDF-MEKQDKTCYESQRVIGKLYR 629
AVDF+K+G P V E PDF M + Y S R+ GKL+R
Sbjct: 1034 AVDFTKSGQPPDPLETKWRADPVTFEVIPPENPERIPDFHMGNERSPMYVSPRLCGKLFR 1093
Query: 630 AVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGI 689
+ I I E D + V GFE Y+ A K + Y+ +L ++M+ YGI
Sbjct: 1094 EFQAI-DNVIKISEERDEQYNIELDETIFVTGFERYMESAQKQLSSYNGQLRSIMENYGI 1152
Query: 690 KTEAEILSGCIMEMAKSF-DKKRD 712
++E EI+SGCI+EM DK +D
Sbjct: 1153 RSEGEIMSGCIVEMRNRISDKDQD 1176
Score = 240 (89.5 bits), Expect = 1.9e-68, Sum P(3) = 1.9e-68
Identities = 86/281 (30%), Positives = 139/281 (49%)
Query: 5 EHALETLFHL---RECCYEPVRWLEE--QYRKYVLSRRFLTSPAVALDDGLIYVNKVLVT 59
E ALE L HL R+ ++ L++ Q R+ + LT +G V KV+ T
Sbjct: 413 EAALEDLVHLIDGRKRIGSILKCLDKICQKREVMKLVNGLTEKESI--EGYQRVRKVIFT 470
Query: 60 PSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST-NE--ER 116
P++V + PE + NRV+R + + LR++F D++ K+ S V L+ T N+ E
Sbjct: 471 PTRVIYIAPETIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRSNVTGKLLDRTANKYLEH 530
Query: 117 HTTIYERVLSTL--RNGIVIGDKKFETLAFSNSQV----KDNSMWMFAS-RPELTAADIR 169
I R L N + + + + F++ Q+ K N + +P++ ++R
Sbjct: 531 GVRIANREYGFLGCSNSQMRDNGAYFMMRFTDKQLDRFYKCNPTASNINFKPKID--EVR 588
Query: 170 ESMGDFRDIKNVAKYAARLGQSFGSSR-EALHVDSSDIEIIPDVEV--EDDGITYCFSDG 226
+G F +I+NV K ARLGQ F SR + + D D+ +G Y FSDG
Sbjct: 589 FQLGRFSEIENVPKLMARLGQCFTQSRLTGVGLGRDDYCSTYDLTGGRATNGSEYTFSDG 648
Query: 227 IGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP 267
+G +S + A+ V++ F PS FQIR+ G KGV+A++P
Sbjct: 649 VGMMSYQFAQEVSQAMQFGKAVPSCFQIRFRGNKGVIAIEP 689
Score = 54 (24.1 bits), Expect = 1.9e-68, Sum P(3) = 1.9e-68
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 742 EDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIK 789
++V KA AWY Y + + LSF W +D + ++K
Sbjct: 1235 QEVRKKAVAWYRACYECA-------QSTREVRKLSFAWIAYDVIAKVK 1275
Score = 45 (20.9 bits), Expect = 1.7e-67, Sum P(3) = 1.7e-67
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 721 KSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAY 756
+ ++K+A AW+ E S +V + AW +AY
Sbjct: 1235 QEVRKKAVAWYRACYECAQSTREVRKLSFAW--IAY 1268
Score = 42 (19.8 bits), Expect = 9.9e-48, Sum P(3) = 9.9e-48
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 92 FVDEDLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDK 137
F+ E Y V LI NEER +I + L G ++ D+
Sbjct: 342 FLKEIFPPKYEIVDDKLID-VNEERKFSITYLIECLLSRGAIVKDQ 386
>WB|WBGene00004509 [details] [associations]
symbol:rrf-2 species:6239 "Caenorhabditis elegans"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] InterPro:IPR007855 Pfam:PF05183 GO:GO:0003968
PANTHER:PTHR23079 GeneTree:ENSGT00390000016620 EMBL:AL132848
EMBL:Z81571 RefSeq:NP_493057.1 ProteinModelPortal:G5EFA8
EnsemblMetazoa:M01G12.12 GeneID:173092 KEGG:cel:CELE_M01G12.12
CTD:173092 WormBase:M01G12.12 NextBio:878243 Uniprot:G5EFA8
Length = 1579
Score = 500 (181.1 bits), Expect = 2.9e-66, Sum P(3) = 2.9e-66
Identities = 153/481 (31%), Positives = 233/481 (48%)
Query: 268 TSSTKLSLRKSMLKYKSESTSLDILANSKYQ-PCF--LNRQLITLLSTLG----IRDHVF 320
+ + K R S +K++ + D + KY P LN+ LI +L + + H
Sbjct: 687 SKNIKCVFRPSQIKFEGKQILGDQVEMVKYSSPVLVALNKPLINILDQVSEMQSLECHRR 746
Query: 321 EKKQREGVAQLDAI-----LTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLM 375
+ E + L + +TD L+ + + L+ + G+ EPF
Sbjct: 747 ITSRIEELMDLQTLSFAKQMTDEACFRNKLKEFPRRIDIDYLRTIW--GFTLSNEPFFRS 804
Query: 376 MLQT---FRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDN 432
+++ F + L + + +I + GR+M+G +DETG L+ GQVFVQ + + R
Sbjct: 805 LVKASIKFAITKQL-FKEQIQIPSELGRSMLGVVDETGILQYGQVFVQYTKNHRNILPPR 863
Query: 433 SCNNRSXXXXXXXXXXXXAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNE 492
N + KNP + PGD+R+ AVD+P LHH+ D VVFP G RPH +E
Sbjct: 864 DSNRKVLGSEIVTGTVLLTKNPGIVPGDVRIFEAVDIPELHHLCDVVVFPQHGPRPHPDE 923
Query: 493 CSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFAD----YIV 548
+GSDLDGD Y V WD +L+ D+ A EK L + ED+++ D Y+
Sbjct: 924 MAGSDLDGDEYSVIWDQKLLLERNEEAFDF--AVEKNL-QTYEWEDIDDLMRDVYVEYLK 980
Query: 549 NDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVA------------AT 596
D +G+I N+H+ ++D S C+ LAK S AVDFSK+G AT
Sbjct: 981 KDLVGLIANSHLHNSDQYG--LTSRVCMNLAKKSCQAVDFSKSGKPPDELQTTWKTDDAT 1038
Query: 597 ---IPSGLRVEIYPDFMEKQDKTC-YESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQS 652
IP R E PD+ D Y S R+ GKL+R + I + +++ ++
Sbjct: 1039 GEMIPPE-RAERVPDYHVGSDHMPKYVSPRLCGKLFREFQGIDNAMKISEEKSEQYKIE- 1096
Query: 653 YDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSF-DKKR 711
D + VDGFE+Y+ DA K Y+ +L + MD YGI++E EI+SGCI+EM D +
Sbjct: 1097 VDESIRVDGFEEYMEDAKKQLASYNGQLKSTMDTYGIQSEGEIMSGCIIEMRNRISDSDQ 1156
Query: 712 D 712
D
Sbjct: 1157 D 1157
Score = 240 (89.5 bits), Expect = 2.9e-66, Sum P(3) = 2.9e-66
Identities = 66/230 (28%), Positives = 117/230 (50%)
Query: 46 LDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVL 105
+++G V KV+ TP++V ++ PE+ + NRV+R++ + + LR++F D++ K+ +
Sbjct: 443 IEEGYQRVRKVIFTPTRVIYTPPEMIMGNRVLRNFDRDGTHVLRVTFRDDNNRKMRANAT 502
Query: 106 SPLISSTNE---ERHTTIYERVLSTLR-NGIVIGDKKFETLAFSNSQVKDNSMWMFAS-R 160
L+ + E + R L + + D + + N+ M + +
Sbjct: 503 GELLDICVKKYLEHGIVVANRDFGFLGCSSSQMRDNGAYFMVKNTDNRHKNACKMNSKFK 562
Query: 161 PELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSR-EALHVDSSDIEIIPDVEV--EDD 217
P + + +R +G+F I+N+ K ARLGQ F SR + + + + D+ +
Sbjct: 563 PNIDS--VRNQLGNFLQIENIPKLMARLGQCFTQSRLTGVSLGPDNYCLTHDLSGGRSSN 620
Query: 218 GITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP 267
G Y FSDG+G +S E A+ V++ F PS FQ RY G KGV+A+DP
Sbjct: 621 GSEYTFSDGVGMMSYEFAQEVSRLMSFGRSVPSCFQFRYRGMKGVLAIDP 670
Score = 62 (26.9 bits), Expect = 2.9e-66, Sum P(3) = 2.9e-66
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 730 WFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIK 789
+FN + E+ + E++ KA AWY Y + R + LSF W +D + +IK
Sbjct: 1206 FFNFRCENPN--EEIRKKAVAWYRACYECAKSTREPRK-------LSFAWIAYDVIAKIK 1256
Query: 790 RGK 792
K
Sbjct: 1257 ETK 1259
Score = 40 (19.1 bits), Expect = 5.9e-64, Sum P(3) = 5.9e-64
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 721 KSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAY 756
+ ++K+A AW+ E S + + AW +AY
Sbjct: 1216 EEIRKKAVAWYRACYECAKSTREPRKLSFAW--IAY 1249
>ASPGD|ASPL0000040001 [details] [associations]
symbol:rrpC species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] InterPro:IPR007855 Pfam:PF05183
EMBL:BN001306 GO:GO:0003968 eggNOG:NOG307726 KO:K11699
PANTHER:PTHR23079 EMBL:AACD01000048 RefSeq:XP_660321.1
EnsemblFungi:CADANIAT00010398 GeneID:2874470 KEGG:ani:AN2717.2
HOGENOM:HOG000166092 OMA:KHKARIP OrthoDB:EOG4VMJPG Uniprot:Q5B9R3
Length = 1203
Score = 625 (225.1 bits), Expect = 4.6e-63, Sum P(2) = 4.6e-63
Identities = 177/579 (30%), Positives = 294/579 (50%)
Query: 50 LIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLI 109
L ++++V+VTPS++ GPE NR++R +P+ + F+R+ F DE+ + +Y +P I
Sbjct: 387 LAHIHRVVVTPSRITLHGPETEPLNRILRRFPNHHEYFIRVQFCDENGEDIY---FNPRI 443
Query: 110 SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAA--- 166
+++ I+ R + NG I + + L FS+S ++ S W A + +
Sbjct: 444 NNS------LIFARFKNVFANGFQIAGRTYTFLGFSHSSLRSRSAWFSAPFIDDDGSLQS 497
Query: 167 --DIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI--IPDVEVEDDGITYC 222
I +++G F +I + A+ AAR+GQ+F + A+++ + I + IPDV+V G
Sbjct: 498 YFTIIKAIGRFSEITSPARCAARIGQAFSETPFAVNLKENGIRVLRIPDVQV--GGRV-- 553
Query: 223 FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLK 281
FSDG+G ISA+ +I+ P+ FQIR GG KG++++DP +K+ +R SM K
Sbjct: 554 FSDGVGTISAKAVDIIHGVLPPRNGAPTCFQIRLGGAKGMLSLDPRLRGSKICIRPSMTK 613
Query: 282 YKSES-TSLDILAN-SKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPL 339
++++ +++I + SK P FLNRQ+I +L +G+ F Q + QL
Sbjct: 614 FQTDDQVNVEICGSGSKPIPLFLNRQVIKILEDMGVDREWFMTLQELRIEQLRKATATTK 673
Query: 340 KAHEALELMSSGENTNVLKE-LLMCGYKPDVE--PFLLMMLQTFRASNLLELRTRTRIFI 396
++ S + + + LL K D + PFL +++ L L+ + RI +
Sbjct: 674 NTATFVKGQSVADCVKLYRLFLLFHNLKLDYKKIPFLRAVVEAMVLRELRLLKHKARIPV 733
Query: 397 QNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSXXXXXXXXXXXXAKNPCL 456
G + G +DETG L +VFV A R +C ++P L
Sbjct: 734 HKGITLYGVMDETGFLNENEVFVTYQAMDRLAAPPQNCR------------LLVTRSPAL 781
Query: 457 HPGDMRVLRAVDVPSLHHMV---DCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP 513
H GD++ V P H + +C+VF KG R ++ SG DLDGD+Y + WD P
Sbjct: 782 HNGDIQYPYNVVPPKGHPLQQQRNCIVFSQKGTRDLPSQLSGGDLDGDLYNIIWDPAAAP 841
Query: 514 PLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHAD-LEPDKARS 572
F P +Y P + R + ED+ +F +++ +D LGVI H++ AD +E + S
Sbjct: 842 KRVFTPANYPRNPPLDIKRVVEREDMANFFVEFMQSDRLGVIATKHMILADQMELGTSHS 901
Query: 573 NQCLELAKLSTIAVDFSKTGVAATIPSGLRVE-IYPDFM 610
+ C +LA+L + AVDFSKTG+ + V PDF+
Sbjct: 902 D-CKKLAQLHSTAVDFSKTGIPVRLKEMPFVNRSRPDFL 939
Score = 56 (24.8 bits), Expect = 4.6e-63, Sum P(2) = 4.6e-63
Identities = 8/16 (50%), Positives = 14/16 (87%)
Query: 618 YESQRVIGKLYRAVKD 633
Y S++++GKLYRA+ +
Sbjct: 977 YRSEKILGKLYRAINE 992
>DICTYBASE|DDB_G0289659 [details] [associations]
symbol:rrpA "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR007855 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF05183 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0289659
GO:GO:0005524 GenomeReviews:CM000154_GR GO:GO:0003676
EMBL:AAFI02000148 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 GO:GO:0003968 PANTHER:PTHR23079
ProtClustDB:CLSZ2429575 RefSeq:XP_636093.1
ProteinModelPortal:Q54H25 EnsemblProtists:DDB0191515 GeneID:8627305
KEGG:ddi:DDB_G0289659 InParanoid:Q54H25 Uniprot:Q54H25
Length = 2417
Score = 566 (204.3 bits), Expect = 1.0e-51, Sum P(2) = 1.0e-51
Identities = 187/669 (27%), Positives = 324/669 (48%)
Query: 116 RHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDF 175
+H R+ L GI++G + + SNSQ+++ S W F S ++ ++ G
Sbjct: 1244 KHPLHENRIKPILEGGILVGGEIYSYAGNSNSQLREYSSW-FVSN-QIGTHTVKIWSG-I 1300
Query: 176 RDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELA 235
+ NV K+ +G F ++ + + + I I D+ T+ F++G G+I ELA
Sbjct: 1301 EHVDNVRKFFRCIGLMFSTTIPTVTLPQNRIYRIQDITRN----THEFTEGCGEIGPELA 1356
Query: 236 EIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSS--TKLSLRKSMLKYK-----SESTS 288
+ + +N F T A+Q+R GG KGV+ V+ + + + +R SM+K+ E +
Sbjct: 1357 KHLNENYNFRPST-CAYQVRIGGNKGVLVVNNQAPDPSGIYIRPSMVKFNPIDCGDEHRT 1415
Query: 289 LDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELM 348
L+I + S C LNRQ+I+LLSTLG +D+VF Q + Q+ I+ D + +A+ +
Sbjct: 1416 LEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTNASKQAI-VE 1474
Query: 349 SSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDE 408
+ T EL Y+ +P++ +L + + ++ + I I++ R ++G D
Sbjct: 1475 FFPDITE--GEL----YQ---DPYIRRILISLYKLKMERIQQKCHIEIKDSRMLLGVCDP 1525
Query: 409 TGTLESGQVFVQCSASRRREFLDNSCNNRSXXXXXXXXXXXXAKNPCLHPGDMRVLRAVD 468
T +L VFVQ E D+ + R KNPC HPGD+R L+AVD
Sbjct: 1526 TNSLPPNTVFVQLE----EEDEDDDDDGRKYEKVIEGLVMVI-KNPCTHPGDVRYLKAVD 1580
Query: 469 VPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEK 528
L H+ + +VF KG P+ E SGSDLDGD YF C+D LI Y E
Sbjct: 1581 NIRLRHLRNVLVFSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRSESETAYLVV-ET 1639
Query: 529 VLARDMTIEDVEEYFA---DYIVN---DSLGVICNAHVVHADLEPDKARSNQCLELAKLS 582
V D + FA Y N LG + ++H+ +D A ++++K
Sbjct: 1640 VSNNDKKANVFNDPFALSSMYSTNAERQELGKLYHSHLAISDQYG--ANHKYSIQISKEC 1697
Query: 583 TIAVDFSKTGVAATIPSGLRVEI----YPDFMEKQDKT--CYESQRVIGKLYRAVKDIAP 636
+D+ KTG+ TIP + + + YP +M++++ T Y+S++++GK+Y + +
Sbjct: 1698 FKEIDYPKTGIHGTIPKEVNIRLQTVGYPHYMQRENSTRVYYQSKKIMGKMYDQIDQLV- 1756
Query: 637 PTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEIL 696
I F +++ D VDG+E Y+ A ++Y ++ +L+ +Y ++E I+
Sbjct: 1757 ---YIGDFLPNISL---DKSNLVDGYEIYLNSAKILYSQYKLQVHSLLRHYSAESEESIM 1810
Query: 697 SGCIMEMAKSFDK-KRDLEA-----IIFAVKSLKKEARAWFNKKNESDSS--HE-DVYAK 747
G ++ DK +D++ I ++ + E F ++++ + H ++ K
Sbjct: 1811 IG-FLDQGFISDKVSKDIKGEMKNDYIKIQQTFENEFLKEFGEQHKENCLLIHRVNIEKK 1869
Query: 748 ASAWYHVAY 756
SAWYHVAY
Sbjct: 1870 VSAWYHVAY 1878
Score = 42 (19.8 bits), Expect = 1.0e-51, Sum P(2) = 1.0e-51
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 84 IDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVL 125
I+ + LS + + K T L L+ STN+E +Y ++L
Sbjct: 568 IELYALLSVLSTEGPKQVLTRLDLLMQSTNQENE--LYNKLL 607
Score = 40 (19.1 bits), Expect = 1.7e-51, Sum P(2) = 1.7e-51
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 146 NSQVKDNSMWMFASR 160
++ V DNS +MF SR
Sbjct: 91 STTVNDNSYYMFDSR 105
Score = 40 (19.1 bits), Expect = 1.7e-51, Sum P(2) = 1.7e-51
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 82 DEIDNFLRLSFVDEDLDKLYSTVLS 106
D++ N R V + L + YST ++
Sbjct: 71 DQLPNIDRYHLVSKSLQQQYSTTVN 95
>WB|WBGene00001214 [details] [associations]
symbol:ego-1 species:6239 "Caenorhabditis elegans"
[GO:0007186 "G-protein coupled receptor signaling pathway"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0007276 "gamete generation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IGI] [GO:0031081
"nuclear pore distribution" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA] [GO:0000794
"condensed nuclear chromosome" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0070090 "metaphase plate"
evidence=IDA] InterPro:IPR007855 Pfam:PF05183 GO:GO:0009792
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0010171
GO:GO:0048477 GO:GO:0007283 GO:GO:0000910 GO:GO:0007281
GO:GO:0000794 GO:GO:0043186 GO:GO:0031081 EMBL:Z78419 GO:GO:0003968
PANTHER:PTHR23079 BRENDA:2.7.7.48 GeneTree:ENSGT00390000016620
EMBL:AF159143 PIR:T21381 RefSeq:NP_492132.1 UniGene:Cel.23243
ProteinModelPortal:G5EBQ3 IntAct:G5EBQ3 EnsemblMetazoa:F26A3.3
GeneID:172524 KEGG:cel:CELE_F26A3.3 CTD:172524 WormBase:F26A3.3
OMA:LRSMMEN NextBio:875891 GO:GO:0070090 Uniprot:G5EBQ3
Length = 1632
Score = 517 (187.1 bits), Expect = 2.2e-47, Sum P(2) = 2.2e-47
Identities = 150/480 (31%), Positives = 236/480 (49%)
Query: 266 DPTSSTKLSLRKSMLKYKSESTSLDILANSKYQ---PCFLNRQLITLLSTLGIRDHVFEK 322
D + S R S +K+ S+ D + KY P LN+ I +L + + +
Sbjct: 736 DSSWSLNCMFRPSQIKFISKRHPRDQVEIVKYSSPVPVALNKPFINILDQVSEMQSL--E 793
Query: 323 KQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKEL----------LMCGYKPDVEPF 372
R +++ +L + + A +++ N LKEL G+ EPF
Sbjct: 794 CHRRVTNRIEELLDRQMLSF-AQQMVDETFCRNRLKELPRRVDIDYLRTTWGFTLSSEPF 852
Query: 373 LLMMLQ-TFRASNLLELRT-RTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFL 430
+++ + + S +LR + I GR+M+G +DETG L+ GQ+FVQ + + L
Sbjct: 853 FRSLIKASIKFSITRQLRKEQIPIPCDLGRSMLGVVDETGRLQYGQIFVQYTKN-----L 907
Query: 431 DNSCNNRSXXXXXXXXXXXXAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHT 490
++ KNPC+ GD+R+ AVD+P LHHM D VVFP G RPH
Sbjct: 908 ALKLPPKNAARQVLTGTVLLTKNPCIVAGDVRIFEAVDIPELHHMCDVVVFPQHGPRPHP 967
Query: 491 NECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDV-EEYFADYIVN 549
+E +GSDLDGD Y + WD +L+ P D+T +K ++ I+D+ E++ Y+
Sbjct: 968 DEMAGSDLDGDEYSIIWDQQLLLDKNEDPYDFTSEKQKASFKEDEIDDLMREFYVKYLKL 1027
Query: 550 DSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTG---------------VA 594
DS+G I N+H+ ++D AR C++LAK + AVDF+K+G
Sbjct: 1028 DSVGQISNSHLHNSDQYGLNARV--CMDLAKKNCQAVDFTKSGQPPDELERKWRKDEETG 1085
Query: 595 ATIPSGLRVEIYPDFMEKQDKT-CYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSY 653
IP R E PD+ D T Y S R+ GKL+R K I + ++V + S
Sbjct: 1086 EMIPPE-RAERVPDYHMGNDHTPMYVSPRLCGKLFREFKAIDDVLKISEERDEQVEI-SI 1143
Query: 654 DTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSF-DKKRD 712
D +++DG+ +Y+ A Y+ +L ++M+ YGIKTE E+ SGCI++M DK +D
Sbjct: 1144 DETIKIDGYTEYMASAKNDLARYNAQLRSMMENYGIKTEGEVFSGCIVDMRNRISDKDQD 1203
Score = 252 (93.8 bits), Expect = 6.8e-18, Sum P(2) = 6.8e-18
Identities = 99/362 (27%), Positives = 164/362 (45%)
Query: 48 DGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSP 107
+G V K++ TP++V + PE + NRV+R Y + LR++F D+D K+ + S
Sbjct: 486 EGYQRVRKIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRTNKTST 545
Query: 108 LISST-NE--ERHTTIYERVLSTL--RNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPE 162
++ T N+ + T+ R L N + + + +S+SQ ++ ++ +P
Sbjct: 546 MLEKTVNQYLKNGITVAGRNFGYLGSSNSQMRDNGAYFMEKYSSSQCREYER-IYQIKPP 604
Query: 163 LT----AADIRESMGDFRDIKNVAKYAARLGQSFGSSR-EALHVDSSDIEIIPDVEVEDD 217
+T R+++G F I N+ K ARLGQ F SR ++++ D+ +
Sbjct: 605 ITFNPKIQAARKNLGRFETIDNIPKMMARLGQCFTQSRLSGVNLERCTYMTTYDLTGGKN 664
Query: 218 --GITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSL 275
G Y FSDG+G +S A++V++ F PS FQ R+ G KGV++++P +L
Sbjct: 665 LKGDEYTFSDGVGMMSYRFAQMVSEVMDFGKGVPSCFQFRFRGMKGVISIEPLLD---NL 721
Query: 276 RKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGV-AQLDAI 334
R+ + Y S D +S C I +S RD V K V L+
Sbjct: 722 RQWSISYNISKPSDD---SSWSLNCMFRPSQIKFISKRHPRDQVEIVKYSSPVPVALNKP 778
Query: 335 LTDPL-KAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMML-QTFRASNLLELRTRT 392
+ L + E L TN ++ELL + F M+ +TF + L EL R
Sbjct: 779 FINILDQVSEMQSLECHRRVTNRIEELL----DRQMLSFAQQMVDETFCRNRLKELPRRV 834
Query: 393 RI 394
I
Sbjct: 835 DI 836
Score = 59 (25.8 bits), Expect = 2.2e-47, Sum P(2) = 2.2e-47
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 747 KASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIKRGK 792
KA AWY Y + R E N+ LSF W +D + ++K+ K
Sbjct: 1268 KAVAWYRACYEEA---RITRE--NKK--LSFAWLAYDVIAKVKQDK 1306
>DICTYBASE|DDB_G0291249 [details] [associations]
symbol:rrpB "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR007855 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF05183 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0291249
GO:GO:0005524 EMBL:AAFI02000177 GenomeReviews:CM000155_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 GO:GO:0003968 KO:K11699
PANTHER:PTHR23079 RefSeq:XP_635263.1 ProteinModelPortal:Q54EH7
EnsemblProtists:DDB0220017 GeneID:8628208 KEGG:ddi:DDB_G0291249
InParanoid:Q54EH7 OMA:NINERTN ProtClustDB:CLSZ2429575
Uniprot:Q54EH7
Length = 2403
Score = 511 (184.9 bits), Expect = 3.0e-44, Sum P(2) = 3.0e-44
Identities = 171/607 (28%), Positives = 293/607 (48%)
Query: 178 IKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEI 237
+ NV K+ +G F ++ + + + I I D+ T+ F++G G+I ELA+
Sbjct: 1318 VDNVRKFFRCIGLMFSTTIPTVTLPQNRIYRIQDITRN----THVFTEGCGEIGPELAKH 1373
Query: 238 VAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSS--TKLSLRKSMLKYK-----SESTSLD 290
+ +N F T A+Q+R GG KG++ V+ + + + +R SM+K+ E +L+
Sbjct: 1374 LNENYNFRPST-CAYQVRIGGNKGMLVVNNQAPDPSGIYIRPSMVKFNPIVCGDEHRTLE 1432
Query: 291 ILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSS 350
I + S C LNRQ+I+LLSTLG +D+VF Q + Q+ I+ D + +A+ +
Sbjct: 1433 ICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTNASKQAI-VEFF 1491
Query: 351 GENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETG 410
+ T EL Y+ +P++ +L + + ++ + I I++ R ++G D T
Sbjct: 1492 PDITE--GEL----YQ---DPYIRRILISLYKLKMERIQQKCHIEIKDSRMLLGVCDPTN 1542
Query: 411 TLESGQVFVQCSASRRREFLDNSCNNRSXXXXXXXXXXXXAKNPCLHPGDMRVLRAVDVP 470
+L VFVQ D ++ KNPC HPGD+R L+AVD
Sbjct: 1543 SLPPNTVFVQLEEE------DEDDDDGRKYEKVIEGLVMVIKNPCTHPGDVRYLKAVDNL 1596
Query: 471 SLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVL 530
L H+ + +VF KG P+ E SGSDLDGD YF C+D LI Y E V
Sbjct: 1597 RLRHLRNVLVFSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRSKSETAYL-GDETVS 1655
Query: 531 ARDMTIEDVEEYFA---DYIVN---DSLGVICNAHVVHADLEPDKARSNQCLELAKLSTI 584
D + FA Y N LG + N+H+ +DL A ++++K
Sbjct: 1656 NNDKKANVFNDPFALSSMYSTNVERQELGKMYNSHLAISDLFG--ANHEFSIQISKECFK 1713
Query: 585 AVDFSKTGVAATIPSG----LRVEIYPDFMEKQDKT--CYESQRVIGKLYRAVKDIAPPT 638
+D+ KTG+ TIP L+ + YP +M++++ T Y+S+ ++GK+Y + +
Sbjct: 1714 EIDYPKTGIHGTIPKEANVWLKTKGYPHYMQRENSTRVYYQSKTIMGKMYDQIDQLV--- 1770
Query: 639 ATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSG 698
I F +++ D VD +E Y+ A ++Y ++ +L+ +Y ++E I+ G
Sbjct: 1771 -YIGDFLPNISL---DKSNLVDDYEIYLNSAKILYSQYKLQVHSLLRHYSAESEESIMIG 1826
Query: 699 CIMEMAKSFDK-KRDLEA-----IIFAVKSLKKEARAWFNKKNESDSS--HE-DVYAKAS 749
++ DK +D++ I ++ + E F ++++ + H ++ K S
Sbjct: 1827 -FLDQGFISDKVSKDIKGEMKNDYIKIQQTFENEFLKEFGEQHKENCLLIHRVNIEKKVS 1885
Query: 750 AWYHVAY 756
AWYHVAY
Sbjct: 1886 AWYHVAY 1892
Score = 309 (113.8 bits), Expect = 2.4e-21, Sum P(2) = 2.4e-21
Identities = 106/375 (28%), Positives = 184/375 (49%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
+ V +TPS+ F P + S R VR + NF+ + V+E L+ PL
Sbjct: 1208 IRDVFITPSRTIFIQPTLQRSCRAVRKFGSS--NFIMVKIVNESLE--------PLQGVN 1257
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESM 172
N +H R+ L GI++G K + SNSQ+++ S W F S ++ ++
Sbjct: 1258 N--KHPLHENRIKPILEGGILVGGKIYSYAGNSNSQLREYSSW-FVSN-QIGTHTVKIWS 1313
Query: 173 GDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISA 232
G + NV K+ +G F ++ + + + I I D+ T+ F++G G+I
Sbjct: 1314 G-IEHVDNVRKFFRCIGLMFSTTIPTVTLPQNRIYRIQDITRN----THVFTEGCGEIGP 1368
Query: 233 ELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSS--TKLSLRKSMLKYK-----SE 285
ELA+ + +N F T A+Q+R GG KG++ V+ + + + +R SM+K+ E
Sbjct: 1369 ELAKHLNENYNFRPST-CAYQVRIGGNKGMLVVNNQAPDPSGIYIRPSMVKFNPIVCGDE 1427
Query: 286 STSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL 345
+L+I + S C LNRQ+I+LLSTLG +D+VF Q + Q+ I+ D + +A+
Sbjct: 1428 HRTLEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTNASKQAI 1487
Query: 346 ELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGC 405
+ + T EL Y+ +P++ +L + + ++ + I I++ R ++G
Sbjct: 1488 -VEFFPDITE--GEL----YQ---DPYIRRILISLYKLKMERIQQKCHIEIKDSRMLLGV 1537
Query: 406 LDETGTLESGQVFVQ 420
D T +L VFVQ
Sbjct: 1538 CDPTNSLPPNTVFVQ 1552
Score = 41 (19.5 bits), Expect = 3.0e-44, Sum P(2) = 3.0e-44
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 146 NSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNV 181
++ V DNS +MF SR + M +++ N+
Sbjct: 93 STTVNDNSYYMFDSRKHDLSVQRPYLMCSYKECYNI 128
Score = 39 (18.8 bits), Expect = 4.8e-44, Sum P(2) = 4.8e-44
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 90 LSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVL 125
LS + + K T L L+ STN+E +Y ++L
Sbjct: 563 LSVLSTEGPKQVLTGLDLLMQSTNQENE--LYNKLL 596
Score = 37 (18.1 bits), Expect = 2.4e-21, Sum P(2) = 2.4e-21
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 559 HVVHADLEPDKA 570
HV ++DL+ D+A
Sbjct: 1889 HVAYSDLKDDRA 1900
>ASPGD|ASPL0000071805 [details] [associations]
symbol:rrpB species:162425 "Emericella nidulans"
[GO:0005724 "nuclear telomeric heterochromatin" evidence=IEA]
[GO:0005721 "centromeric heterochromatin" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0031380 "nuclear RNA-directed
RNA polymerase complex" evidence=IEA] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] [GO:0045141 "meiotic telomere
clustering" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0031048 "chromatin silencing by
small RNA" evidence=IEA] [GO:0031060 "regulation of histone
methylation" evidence=IEA] [GO:0071585 "detoxification of cadmium
ion" evidence=IEA] [GO:0034613 "cellular protein localization"
evidence=IEA] [GO:0071276 "cellular response to cadmium ion"
evidence=IEA] [GO:0030702 "chromatin silencing at centromere"
evidence=IEA] InterPro:IPR007855 Pfam:PF05183 EMBL:BN001303
GO:GO:0003968 PANTHER:PTHR23079 EnsemblFungi:CADANIAT00005632
Uniprot:C8VAM8
Length = 869
Score = 220 (82.5 bits), Expect = 1.4e-37, Sum P(4) = 1.4e-37
Identities = 68/213 (31%), Positives = 109/213 (51%)
Query: 194 SSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYT---PS 250
S+ A+ ++ ++ I D+E G Y FSDG+G+IS LA+IV T PS
Sbjct: 320 STTRAISGCTAHVKKIDDIE----GNGYIFSDGVGRISKFLAQIVKSELKIKTPTKEPPS 375
Query: 251 AFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITL 309
A+Q R G KG++ V P + + + +RKS K+ + S L+I+ S++ LNRQLI +
Sbjct: 376 AYQFRLVGCKGMLIVFPQARPQEVHIRKSQFKFAALSQGLEIIRWSQFTVASLNRQLILV 435
Query: 310 LSTLGIRDHVFEKKQREGVAQLD-AILTDPLKAHE------------ALELMSSGENTNV 356
LSTLGI D VF K + + LD A+ +DP AH + L +GE +
Sbjct: 436 LSTLGITDKVFHLKLKTMLRNLDEAMESDPKAAHLLRKYVDPNQVTLTIYLPKNGEKYEI 495
Query: 357 LKELLMCGYKPDVEPFLLMMLQTFRASNLLELR 389
++ + + P + P + +++ A L L+
Sbjct: 496 IEGICILARNPSLHPGGIRVVRAVNAPGLHHLK 528
Score = 206 (77.6 bits), Expect = 1.4e-37, Sum P(4) = 1.4e-37
Identities = 38/79 (48%), Positives = 49/79 (62%)
Query: 451 AKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHE 510
A+NP LHPG +RV+RAV+ P LHH+ D VV P G R + CSGSDLDGD + V WD +
Sbjct: 503 ARNPSLHPGGIRVVRAVNAPGLHHLKDIVVLPRTGDRDIASMCSGSDLDGDDFLVIWDQD 562
Query: 511 LIPPLQFPPMDYTPAPEKV 529
L+P F P ++
Sbjct: 563 LLPDDWFRSFQLRQLPTRI 581
Score = 115 (45.5 bits), Expect = 1.4e-37, Sum P(4) = 1.4e-37
Identities = 29/77 (37%), Positives = 45/77 (58%)
Query: 72 LSNRVVRSYPDEIDNFLRLSFVD-EDLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRN 130
+SN V+R Y + DNFLR+ F D + + ++++TV +T +E + R+ L N
Sbjct: 248 ISNCVIRRYANLADNFLRVRFTDAKHIGRIHATV-----DNTMDE----VLTRIKRALAN 298
Query: 131 GIVIGDKKFETLAFSNS 147
GI IG ++E LAF NS
Sbjct: 299 GITIGSTRYEFLAFGNS 315
Score = 43 (20.2 bits), Expect = 1.4e-37, Sum P(4) = 1.4e-37
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 669 AFKYKTEYDNRLGNLMDYYGIKTEAEI 695
A + K EYD + + + IKTE E+
Sbjct: 650 ARRLKDEYDIAIRRITAQHEIKTEFEV 676
>DICTYBASE|DDB_G0280963 [details] [associations]
symbol:rrpC "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR007855 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF05183 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280963 GO:GO:0005524
GenomeReviews:CM000152_GR EMBL:AAFI02000040 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1111 GO:GO:0003968 PANTHER:PTHR23079
ProtClustDB:CLSZ2429575 RefSeq:XP_640790.1
ProteinModelPortal:Q54UI6 STRING:Q54UI6 EnsemblProtists:DDB0216193
GeneID:8622843 KEGG:ddi:DDB_G0280963 InParanoid:Q54UI6 OMA:YELFNDY
Uniprot:Q54UI6
Length = 2285
Score = 290 (107.1 bits), Expect = 2.5e-29, Sum P(3) = 2.5e-29
Identities = 107/403 (26%), Positives = 191/403 (47%)
Query: 33 VLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSF 92
++ + P + ++G + +N++ VTPS++ P ++L NR++R + E F+ +F
Sbjct: 1055 IIEELYKDKP-IQSNNGWVLINEIFVTPSRIVLKPPRLTLGNRILRKFSPE--KFILFNF 1111
Query: 93 VDEDLDKLYS-TVLSPLISSTNEERHTTIYERVLSTLRNGIVI---GDKKFETLAFSNSQ 148
DE+L+ SPL T ER+ + NGI I KK+ + S SQ
Sbjct: 1112 TDENLEPFRGLNKSSPL---------TKTIERIFN---NGIEIIQGSGKKYFFIGCSQSQ 1159
Query: 149 VKDNSMWMFASRPELTAADIRESMGDFR-DIKNVAKYAARLGQSFGSSREALHVDSSDIE 207
V++ S W F ++T + + + + K L F ++ ++ + IE
Sbjct: 1160 VRNYSAW-FVLEDKVTNEKSALNWSGIKYESLQMIKVFRNLCLLFSTTLKSQVIYK--IE 1216
Query: 208 IIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP 267
+IPD+ + +G + F++G G I ++L E++ + + T A+QIR GG KGV+ ++
Sbjct: 1217 MIPDI-ISKEG--HNFTEGCGFIGSKLVELINQQNNYNSST-CAYQIRLGGSKGVLVLNE 1272
Query: 268 T-SSTKLSLRKSMLK----YKS-----ESTSLDILANSKYQPCFLNRQLITLLSTLGIRD 317
L +R SM K YKS E +L+I++ S C LNRQ ITLLS G+ D
Sbjct: 1273 NIDEMSLQIRPSMSKFELDYKSGQLDEEHKTLEIVSASTTSRCKLNRQAITLLSNAGVED 1332
Query: 318 HVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMML 377
F + + Q L D + E L G+ + E Y+ + ++ +L
Sbjct: 1333 STFLQMLEVELNQNAQTLVDVNLSKELL-----GDFFQHITE-----YELFNDYYIRSIL 1382
Query: 378 QTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQ 420
S L++++ + I ++ R ++G D +GTL V+++
Sbjct: 1383 LKLYKSKLIKIQDKCWIEVKESRNLLGVCDTSGTLPEDTVYIE 1425
Score = 287 (106.1 bits), Expect = 5.3e-29, Sum P(3) = 5.3e-29
Identities = 110/419 (26%), Positives = 188/419 (44%)
Query: 105 LSPLISSTNEERHTTIYERVLSTLRNGIVI--GD-KKFETLAFSNSQVKDNSMWMFASRP 161
L P T ER+ + NGI I G KK+ + S SQV++ S W F
Sbjct: 1116 LEPFRGLNKSSPLTKTIERIFN---NGIEIIQGSGKKYFFIGCSQSQVRNYSAW-FVLED 1171
Query: 162 ELTAADIRESMGDFR-DIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGIT 220
++T + + + + K L F ++ ++ + IE+IPD+ + +G
Sbjct: 1172 KVTNEKSALNWSGIKYESLQMIKVFRNLCLLFSTTLKSQVIYK--IEMIPDI-ISKEG-- 1226
Query: 221 YCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSM 279
+ F++G G I ++L E++ + + T A+QIR GG KGV+ ++ L +R SM
Sbjct: 1227 HNFTEGCGFIGSKLVELINQQNNYNSST-CAYQIRLGGSKGVLVLNENIDEMSLQIRPSM 1285
Query: 280 LKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPL 339
K++ + S + K L + S + GV D+ L
Sbjct: 1286 SKFELDYKSGQLDEEHKT----LEIVSASTTSRCKLNRQAITLLSNAGVE--DSTFLQML 1339
Query: 340 KAHEALELMSSGENTNVLKELL------MCGYKPDVEPFLLMMLQTFRASNLLELRTRTR 393
+ E + + + N+ KELL + Y+ + ++ +L S L++++ +
Sbjct: 1340 EV-ELNQNAQTLVDVNLSKELLGDFFQHITEYELFNDYYIRSILLKLYKSKLIKIQDKCW 1398
Query: 394 IFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSXXXXXXXXXXXXAKN 453
I ++ R ++G D +GTL V+++ + +DN + KN
Sbjct: 1399 IEVKESRNLLGVCDTSGTLPEDTVYIEVE---ELDPIDNLMKPK-----VIIGRVAVLKN 1450
Query: 454 PCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI 512
PC HPGD+R L+A+D P L+ + + F G P+ +CSGSDLDGD YFV +D LI
Sbjct: 1451 PCHHPGDVRFLKAIDHPPLNGKRNVLFFSTNGMVPNFKQCSGSDLDGDRYFVIYDQTLI 1509
Score = 142 (55.0 bits), Expect = 2.5e-29, Sum P(3) = 2.5e-29
Identities = 62/250 (24%), Positives = 110/250 (44%)
Query: 482 PAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEE 541
P G+ N G + D + D+++ P P K+ D+ +++V++
Sbjct: 1518 PYLGEEQTVNPLIGEEDSDDDQYENDDNDITIPTSTTTKSTNNTPTKL--SDIYLKNVDK 1575
Query: 542 YFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIP--- 598
LG I N H+ +D+E K S +++A I VD KT V IP
Sbjct: 1576 --------SKLGTISNTHLAISDIE--KVSSINSIKVAIQCAIEVDSVKTSVHGIIPRDV 1625
Query: 599 -SGLRVEIYPDFMEKQDKTCYE-----------SQRVIGKLYRAVKDIAPPTATIKSFTK 646
S L+ + YP FM+ ++ + +E S RVIGK+Y D A F
Sbjct: 1626 KSILKEKGYPHFMKIKNGSTFEYKGGNQRKYYISDRVIGKIY----DSAENLLWFGDFLP 1681
Query: 647 EVAMQSYDTDMEVDGFEDYIT-DAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAK 705
E + D + V G+++Y+ + F +Y +++ +++ +G ++E ++L G M
Sbjct: 1682 EAKV---DESLLVQGYKEYLNHENFTTYMDYKSKINSILRRFGAQSEEDLLIGF---MDP 1735
Query: 706 SFDKKRDLEA 715
F +K +EA
Sbjct: 1736 QFSEKLSIEA 1745
Score = 41 (19.5 bits), Expect = 2.5e-29, Sum P(3) = 2.5e-29
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 738 DSSHEDVYAKASAWYHVAY 756
+ ++ ++ K AWY ++Y
Sbjct: 1795 NENYTEIEKKVCAWYFISY 1813
>TAIR|locus:2052040 [details] [associations]
symbol:AT2G19910 species:3702 "Arabidopsis thaliana"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016441 "posttranscriptional gene silencing" evidence=ISS]
InterPro:IPR007855 Pfam:PF05183 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 GO:GO:0031047 EMBL:AC005169
GO:GO:0003968 KO:K11699 PANTHER:PTHR23079 IPI:IPI00534018
PIR:F84582 RefSeq:NP_179581.2 UniGene:At.52837 PaxDb:O82190
PRIDE:O82190 EnsemblPlants:AT2G19910.1 GeneID:816510
KEGG:ath:AT2G19910 TAIR:At2g19910 eggNOG:NOG279775
InParanoid:O82190 OMA:IFYSERA PhylomeDB:O82190
Genevestigator:O82190 Uniprot:O82190
Length = 992
Score = 121 (47.7 bits), Expect = 2.7e-12, Sum P(6) = 2.7e-12
Identities = 33/99 (33%), Positives = 52/99 (52%)
Query: 452 KNPCLHPGDMRVLRAVDVPSLHHMVD----CVVFPAKGKRPHTNECSGSDLDGDVYFVCW 507
+NP LH GD+ VL+A V +L V V FP KG R +E +G D DGD+YF+
Sbjct: 644 RNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISR 703
Query: 508 DHELIPPLQ-FPPMDYTPAPEKVLA----RDMTIEDVEE 541
+ +L+ + P + P K+ +++ E++EE
Sbjct: 704 NPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELSEEELEE 742
Score = 87 (35.7 bits), Expect = 2.7e-12, Sum P(6) = 2.7e-12
Identities = 33/134 (24%), Positives = 58/134 (43%)
Query: 571 RSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRA 630
R L+L + A+D K G +P L ++ +P +ME+ K + S ++G ++
Sbjct: 787 RKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDT 846
Query: 631 VKDI---APPTATIKS---FTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYD----NRL 680
V PP + I F E +S+ D +E+Y ++ + E D N+L
Sbjct: 847 VDSHNAEEPPPSEISKLWYFEDEPVPKSH-MDKFTSWYENYRSEMSQAMMETDKVKRNQL 905
Query: 681 GNLM------DYYG 688
N + D+YG
Sbjct: 906 TNEVIQRYKQDFYG 919
Score = 86 (35.3 bits), Expect = 2.7e-12, Sum P(6) = 2.7e-12
Identities = 44/180 (24%), Positives = 78/180 (43%)
Query: 252 FQIRYGGY--KGVVAVDPTSSTK-LSLRKSMLKYKSEST--------SLDILANSKY-QP 299
F+I Y GY KG + + + +R SM+K + T SL+++ S +
Sbjct: 455 FRIFYNGYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRK 514
Query: 300 CFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKE 359
L+R L+ LLS G+ + F R + + I A +A ++ G++ +
Sbjct: 515 ARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAA--INYGDD-QYTAD 571
Query: 360 LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFV 419
+++ G D EP+L L + L+ R I +MG +D TG L+ ++ V
Sbjct: 572 MILVGIPLD-EPYLKDRLSYLLKTERNALKAG-RFPIDESYYIMGTVDPTGELKENEICV 629
Score = 46 (21.3 bits), Expect = 2.7e-12, Sum P(6) = 2.7e-12
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 736 ESDSSHEDVYAKASAWYHVAY 756
+S+ S E++Y +A A Y+V Y
Sbjct: 925 DSNKSLEELYPQALALYNVVY 945
Score = 44 (20.5 bits), Expect = 2.7e-12, Sum P(6) = 2.7e-12
Identities = 21/75 (28%), Positives = 31/75 (41%)
Query: 178 IKNVAKYAARLGQSFGSSREALHVDSSDI--EIIPDVEVED---------DGITYCFSDG 226
+ ++ Y +R S + L VD + I E I D+ D +G SDG
Sbjct: 347 LSSLPNYMSRFSLIL-SKTKTLEVDMTGITFEQIDDIHCHDQDDKDVLDKNGKPCIHSDG 405
Query: 227 IGKISAELAEIVAKN 241
G IS +LA + N
Sbjct: 406 TGYISEDLARMCPVN 420
Score = 39 (18.8 bits), Expect = 2.7e-12, Sum P(6) = 2.7e-12
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 120 IYERVLSTLRNGIVIGDKKFETLAFSN 146
+Y +NGI++G +++ F +
Sbjct: 267 LYSTYKGIAKNGIMVGLRRYRFFVFKD 293
>TAIR|locus:2052030 [details] [associations]
symbol:AT2G19920 species:3702 "Arabidopsis thaliana"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0016441 "posttranscriptional gene silencing" evidence=ISS]
InterPro:IPR007855 Pfam:PF05183 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 GO:GO:0031047 EMBL:AC005169
GO:GO:0003968 KO:K11699 PANTHER:PTHR23079 IPI:IPI00546115
PIR:G84582 RefSeq:NP_179582.2 UniGene:At.50085 PRIDE:O82189
EnsemblPlants:AT2G19920.1 GeneID:816511 KEGG:ath:AT2G19920
TAIR:At2g19920 eggNOG:NOG266676 InParanoid:O82189 OMA:MSIHEAR
PhylomeDB:O82189 Genevestigator:O82189 Uniprot:O82189
Length = 927
Score = 117 (46.2 bits), Expect = 1.7e-11, Sum P(6) = 1.7e-11
Identities = 27/65 (41%), Positives = 38/65 (58%)
Query: 452 KNPCLHPGDMRVLRAVDVPSLHHMVDC----VVFPAKGKRPHTNECSGSDLDGDVYFVCW 507
+NP LH GD+ +L+A V SL V V FP KG R +E +G D DGD+YF+
Sbjct: 633 RNPGLHFGDIHILKATYVKSLEQYVGNSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISR 692
Query: 508 DHELI 512
+ +L+
Sbjct: 693 NPKLL 697
Score = 86 (35.3 bits), Expect = 1.7e-11, Sum P(6) = 1.7e-11
Identities = 19/65 (29%), Positives = 39/65 (60%)
Query: 568 DKAR-SNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGK 626
+KA + L+L + A+D KTG +P ++V+++P +ME+ +KT ++S ++G
Sbjct: 772 EKAEMKKKMLKLTDIYYDAIDAPKTGTEVNLPLDVKVDLFPHYMER-NKT-FKSTSILGL 829
Query: 627 LYRAV 631
++ V
Sbjct: 830 IFDTV 834
Score = 74 (31.1 bits), Expect = 1.7e-11, Sum P(6) = 1.7e-11
Identities = 45/183 (24%), Positives = 80/183 (43%)
Query: 249 PSAFQIRY----GGYKGVVAVDPTSSTK-LSLRKSMLK-YKSE-----ST--SLDILANS 295
P QIR KG+ ++ + + +R SM+K YK + ST SL+++ S
Sbjct: 441 PLLIQIRMFNDGSAVKGIFLLNKNLPPQTVQVRPSMIKVYKDKNLSNFSTFNSLEVVTTS 500
Query: 296 KY-QPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENT 354
+ L++ L+ LLS G+ + F + + I A +A + ++
Sbjct: 501 NPPKRAKLSKNLVALLSYGGVPNDFFLDILLNTLEKKKTIFFKVRAAGKAALHYGNMDDK 560
Query: 355 NVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLES 414
N L +++M G D EP+L L +L+ ++ I +MG +D TG L+
Sbjct: 561 NAL-QMIMAGIPLD-EPYLKHYLSKLLKLEKDDLKAG-KLPIDESYYLMGTVDPTGELKE 617
Query: 415 GQV 417
+V
Sbjct: 618 DEV 620
Score = 54 (24.1 bits), Expect = 1.7e-11, Sum P(6) = 1.7e-11
Identities = 25/93 (26%), Positives = 39/93 (41%)
Query: 163 LTAADIRESMGDFRDIKNV---AKYAARLGQSFGSSREALHVDSSDIEI--IPDVEVED- 216
L+ I E+ F + + A Y AR +++ L VD ++I + I D+ D
Sbjct: 329 LSGMSIHEARMHFMHVHTLPSPANYMARFSLILSKTKK-LEVDMTEITVMQIDDIHCHDQ 387
Query: 217 --------DGITYCFSDGIGKISAELAEIVAKN 241
+G SDG G IS +LA + N
Sbjct: 388 SNNDVLDKNGKPRIHSDGTGYISEDLARMCPLN 420
Score = 42 (19.8 bits), Expect = 1.7e-11, Sum P(6) = 1.7e-11
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 121 YERVLSTLRNGIVIGDKKFETLAFSN 146
Y + +NGI++G ++++ F +
Sbjct: 268 YSKYKEIAKNGIMVGLRRYQFFVFKD 293
Score = 40 (19.1 bits), Expect = 1.7e-11, Sum P(6) = 1.7e-11
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 702 EMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHV 754
EM ++ + D ++ ++ K+E + K ES E++Y KA A Y+V
Sbjct: 876 EMCQAMNSDDD-DSCNEVIQKYKQEFYSAAGFK-ESKKILEELYPKALALYNV 926
>TAIR|locus:2052020 [details] [associations]
symbol:AT2G19930 species:3702 "Arabidopsis thaliana"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016441 "posttranscriptional gene silencing" evidence=ISS]
[GO:0009410 "response to xenobiotic stimulus" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009855 "determination of
bilateral symmetry" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0009944 "polarity specification of
adaxial/abaxial axis" evidence=RCA] [GO:0010014 "meristem
initiation" evidence=RCA] [GO:0010075 "regulation of meristem
growth" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0048522 "positive regulation of cellular process"
evidence=RCA] [GO:0050826 "response to freezing" evidence=RCA]
InterPro:IPR007855 Pfam:PF05183 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 GO:GO:0031047 EMBL:AC005169
GO:GO:0003968 KO:K11699 PANTHER:PTHR23079 EMBL:AK229381
IPI:IPI00786210 PIR:H84582 RefSeq:NP_179583.3 UniGene:At.39772
EnsemblPlants:AT2G19930.1 GeneID:816512 KEGG:ath:AT2G19930
TAIR:At2g19930 HOGENOM:HOG000082682 OMA:LANYMAR
Genevestigator:O82188 Uniprot:O82188
Length = 977
Score = 128 (50.1 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 83/326 (25%), Positives = 138/326 (42%)
Query: 452 KNPCLHPGDMRVLRAVDVPSLHHMVD----CVVFPAKGKRPHTNECSGSDLDGDVYFVCW 507
+NP LH GD+ +L+A V +L V V FP KG R +E +G D DGD+YF+
Sbjct: 633 RNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISR 692
Query: 508 DHELIPPLQ--FPPMDYTP--------APEKVLARDMTIEDVEEYF--ADYIVNDSLGVI 555
+ EL+ + P + TP AP ++ ++ E++ E F A + ++ +G+
Sbjct: 693 NPELLENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELE-EELFEMFLTAGFHASNVIGIA 751
Query: 556 CNAHVVHAD--LEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQ 613
++ + D L R+ + E+ K +D + A G +V + P+ + K
Sbjct: 752 ADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAP-KKGDKVYL-PNKL-KP 808
Query: 614 DKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAF--- 670
D + +R K +++ + +KS T E S + ++ FED F
Sbjct: 809 DIFPHYMER--DKKFQSTSILGLIFDFVKSQTTEEPSPSSEIS-KLPCFEDEPVSEFHMQ 865
Query: 671 KYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAVKSLKKEARAW 730
K + YDN Y +TE M A DK +I K + A
Sbjct: 866 KCRLWYDN-------Y---RTE--------MTQAMKTDKDESANEVIQRYKQ-EFYGAAG 906
Query: 731 FNKKNESDSSHEDVYAKASAWYHVAY 756
F +S S E++Y +A A Y + Y
Sbjct: 907 FE---DSKKSLEELYPQALALYKIVY 929
Score = 70 (29.7 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 41/180 (22%), Positives = 79/180 (43%)
Query: 252 FQIRYGGY--KGVVAVDPTSSTK-LSLRKSMLKYKSE------ST--SLDILANSKY-QP 299
F++ Y GY KG ++ + + +R SM+K + ST +L+++ S +
Sbjct: 442 FRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPKR 501
Query: 300 CFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKE 359
L++ L+ LLS GI + F + + +I + A A ++ N +
Sbjct: 502 TKLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKRAALNAALNYGEMDDQNAA-Q 560
Query: 360 LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFV 419
+++ G D EP L L + +L+ ++ + +MG +D TG L+ +V V
Sbjct: 561 MILVGIPLD-EPHLKNYLSILLKTEKNDLKAG-KLPVTESYYLMGTVDPTGALKEDEVCV 618
Score = 53 (23.7 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 29/93 (31%), Positives = 37/93 (39%)
Query: 163 LTAADIRESMGDFRDIKN---VAKYAARLGQSFGSSREALHVDSSDIEI--IPDVEVED- 216
LT I E+ F + +A Y AR S + L VD + I I D+ D
Sbjct: 325 LTGKSIYEARMHFMHVHRAPTLANYMARFSLIL-SKTKTLEVDMTGITFDQIDDIHCHDQ 383
Query: 217 DGITY-------CF-SDGIGKISAELAEIVAKN 241
DG C SDG G IS +LA + N
Sbjct: 384 DGKDVLDKNKKPCIHSDGTGYISEDLARMCPLN 416
Score = 47 (21.6 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 17/71 (23%), Positives = 33/71 (46%)
Query: 110 SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIR 169
SST H Y+ + +NGI+IG ++++ F + ++ + S ++ IR
Sbjct: 256 SSTYSIDHYFTYKGIA---KNGIMIGLRRYQFFVFKDGGKEEKKKDL--STKKVKCYFIR 310
Query: 170 ESMGDFRDIKN 180
F D++N
Sbjct: 311 TDSTAFYDMQN 321
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.398 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 795 783 0.00095 121 3 11 22 0.39 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 621 (66 KB)
Total size of DFA: 400 KB (2195 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 66.98u 0.25s 67.23t Elapsed: 00:00:03
Total cpu time: 66.98u 0.25s 67.23t Elapsed: 00:00:03
Start: Thu May 9 18:02:58 2013 End: Thu May 9 18:03:01 2013