BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003789
(795 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225424397|ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 1144 bits (2959), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 555/797 (69%), Positives = 647/797 (81%), Gaps = 9/797 (1%)
Query: 1 MEYIEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTP 60
+ +IEHALE L+HL+ECCYEPVRWL EQYR YV + SPA++LD GL+YV +V +TP
Sbjct: 307 ISFIEHALEKLYHLKECCYEPVRWLSEQYRTYV-KKPVAGSPAISLDTGLVYVRRVQITP 365
Query: 61 SKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTI 120
KVYF GPE+++SNRV+R+YP++IDNFLR+SF+DE+L+K++STV+SP +S E R T +
Sbjct: 366 CKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHSTVISPRMS--KEGRRTGV 423
Query: 121 YERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKN 180
Y R+LS L+NGIVIGDKKF+ LAFS+SQ++DNS WMFASRP LTAA+IR MGDF I+N
Sbjct: 424 YRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPGLTAAEIRSWMGDFSQIRN 483
Query: 181 VAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAK 240
VAKYAARLGQSF SS+E L V +IE IPD+E+ TY FSDGIGKIS +LA VA
Sbjct: 484 VAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYVFSDGIGKISPQLAHRVAI 543
Query: 241 NCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPC 300
CG TPSAFQIRYGGYKGVVAVDPTSS KLSLRKSM KY+S++T+LD+LA SKYQP
Sbjct: 544 KCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESDNTNLDVLAWSKYQPS 603
Query: 301 FLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKEL 360
FLNRQLITLLSTLG++DHVFEKKQR V QLD IL DP+ A EALELMS GENTNVLKE+
Sbjct: 604 FLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALELMSPGENTNVLKEM 663
Query: 361 LMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQ 420
LMCGYKPD EPFL MMLQTFRA+ LLELRT+TRIF+ NGR+MMGCLDET TLE G+VFVQ
Sbjct: 664 LMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQ 723
Query: 421 CSASRRREFLDNSCNNRSG----ELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMV 476
S + R+ +S R + ++EGK+VVAKNPCLHPGD+RVL AV+VP+LHHMV
Sbjct: 724 ISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHHMV 783
Query: 477 DCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTI 536
DCVVFP KGKRPH NECSGSDLDGD+YFVCWD +LIPP Q PMDYTPAP KVL D+ I
Sbjct: 784 DCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQINPMDYTPAPTKVLDHDVMI 843
Query: 537 EDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAAT 596
E+VEEYF +YIVNDSLG+I NAH V AD E DKA + C ELAKL +IAVDF KTGV A
Sbjct: 844 EEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAE 903
Query: 597 IPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTD 656
IP LRV+ YPDFMEK DK YESQ VIGKL+R VKDIAP I+SFT++VA QSYD D
Sbjct: 904 IPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPD 963
Query: 657 MEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAI 716
MEV GFEDY++DAF YK+EYD +LGNLMDYYGIKTE+EILSG IM M+KSFD+++D EAI
Sbjct: 964 MEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRRKDAEAI 1023
Query: 717 IFAVKSLKKEARAWFNK-KNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFL 775
AVKSL+KEAR WFNK +E+DS +DVYAKASAWYHV YHP YWG Y EGM+R HFL
Sbjct: 1024 GLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVTYHPDYWGCYN-EGMDRDHFL 1082
Query: 776 SFPWCIHDKLIEIKRGK 792
SFPWC++DKLI KR K
Sbjct: 1083 SFPWCVYDKLIHTKRKK 1099
>gi|224111420|ref|XP_002315849.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222864889|gb|EEF02020.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1102
Score = 1140 bits (2950), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/791 (67%), Positives = 646/791 (81%), Gaps = 5/791 (0%)
Query: 3 YIEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSK 62
YI+HALE L HL+ECCY+P RWL EQY+KY+ + R T PA+A+DDGL+++ +V +TP+K
Sbjct: 314 YIQHALEKLSHLKECCYDPARWLREQYQKYLTTGRLPTPPAIAVDDGLVFLRRVQITPTK 373
Query: 63 VYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYE 122
+YF GP+++LSNRV+R YP +IDNFLR+SFVDEDLDKL+S +SP S E R T IY+
Sbjct: 374 LYFCGPDVNLSNRVLRKYPGDIDNFLRVSFVDEDLDKLFSANISPRTFSAIEGRQTNIYQ 433
Query: 123 RVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVA 182
R+LS RNGI IG KKFE L FS SQV+++S+WMFASRP LTAADIRE MGDFR+IKNVA
Sbjct: 434 RILSVQRNGITIGSKKFEFLGFSQSQVRESSLWMFASRPGLTAADIREWMGDFREIKNVA 493
Query: 183 KYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNC 242
KYAARLGQSF SSRE+ ++D +IEIIPD+EV+ G+ Y FSDGIGKISAELA+ +A+
Sbjct: 494 KYAARLGQSFSSSRESFNIDRHEIEIIPDIEVKSGGVNYVFSDGIGKISAELADSIARKL 553
Query: 243 GFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFL 302
+TPSAFQIRYGGYKGVVAVDPTSS KLSLR+SM KYKS +TSLDIL SKY+ CFL
Sbjct: 554 RLRSFTPSAFQIRYGGYKGVVAVDPTSSMKLSLRRSMSKYKSTNTSLDILDWSKYRACFL 613
Query: 303 NRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLM 362
NR++I LLSTLG++D VFE+KQ+E +AQLDAILTDP+KA EALELM+ GEN VL +L
Sbjct: 614 NREVIILLSTLGVKDQVFERKQKEAIAQLDAILTDPIKAQEALELMAGGENARVLNGMLA 673
Query: 363 CGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCS 422
CGYKP EPFL MML+TFRA LL+LRT++RIF+ NGRAM GCLDET TLE GQ FVQ S
Sbjct: 674 CGYKPGAEPFLAMMLETFRALKLLDLRTKSRIFVPNGRAMTGCLDETRTLEYGQAFVQYS 733
Query: 423 ASRRREFLDNSCNNRSGELG-VVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVF 481
+R + D+ ++ + +V GK+VVAKNPCLHPGD+++L+AVDVP+LHHMVDC+VF
Sbjct: 734 RARLSKSHDHFKGGKTDQHTLIVRGKIVVAKNPCLHPGDVQILKAVDVPALHHMVDCIVF 793
Query: 482 PAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEE 541
P KGKRPHTNECSGSDLDGDVYFVCWD +LIPP +FPPMDYT +L D+TIE+V+E
Sbjct: 794 PQKGKRPHTNECSGSDLDGDVYFVCWDTDLIPPQKFPPMDYTAPQTTILDHDVTIEEVQE 853
Query: 542 YFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGL 601
YFADY++NDSLG+IC AHVV AD EPD ARS +C+ELA+LS+IAVDF KTGV A IP L
Sbjct: 854 YFADYLLNDSLGIICTAHVVFADSEPDMARSEKCIELAQLSSIAVDFPKTGVPAKIPKEL 913
Query: 602 RVEIYPDFMEKQ--DKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEV 659
RV+ YPDFMEK T Y SQRV+GKL+RAV+DIAP T+ ++ FTKE A +SYD DMEV
Sbjct: 914 RVKEYPDFMEKAAYKHTTYVSQRVLGKLFRAVRDIAPDTSPVRPFTKEAAKRSYDPDMEV 973
Query: 660 DGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFA 719
DGF+DYI +AF YK+EYDN+LGN+MDYYGIKTEAEI+ GCIM M +SFDKK+DLE I F+
Sbjct: 974 DGFKDYINEAFYYKSEYDNKLGNMMDYYGIKTEAEIIGGCIMRMGRSFDKKKDLEGINFS 1033
Query: 720 VKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPW 779
V SL+K+ARAWFN+ S S +DVY KASAWYHV YHP +WG Y EGM+R HFLSFPW
Sbjct: 1034 VSSLRKQARAWFNESG-SKESPDDVYRKASAWYHVTYHPRFWGLY-NEGMDRVHFLSFPW 1091
Query: 780 CIHDKLIEIKR 790
C+HDKL EIK+
Sbjct: 1092 CVHDKLFEIKK 1102
>gi|224099569|ref|XP_002311535.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222851355|gb|EEE88902.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1139
Score = 1139 bits (2947), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/793 (68%), Positives = 654/793 (82%), Gaps = 12/793 (1%)
Query: 1 MEYIEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTP 60
+ +I++ALE L H ECCY+PVRWL E+YRK + + R T PAVA+DDGL++V +V +TP
Sbjct: 326 IAHIQNALEKLHHSMECCYDPVRWLREEYRKCISTGRLPTPPAVAVDDGLVHVRRVQITP 385
Query: 61 SKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTI 120
+KVYF GPE++LSNRV+R YPD+IDNFLR+SFVDEDLDKL+ST +SP S E R T I
Sbjct: 386 TKVYFRGPEVNLSNRVLRKYPDDIDNFLRVSFVDEDLDKLFSTNISPRTFSAIEGRQTKI 445
Query: 121 YERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKN 180
Y+R+LST RNGIVIG KKFE L FS+SQ++++S+WMFASR L AADIR MGDFR+IKN
Sbjct: 446 YQRILSTQRNGIVIGSKKFEFLGFSSSQLRESSLWMFASRTGLRAADIRRWMGDFREIKN 505
Query: 181 VAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAK 240
VAKYAARLGQSFGSSRE+ ++D +IE IPD+EV G+ Y FSDGIGKISA LA +A+
Sbjct: 506 VAKYAARLGQSFGSSRESFNIDEKEIEKIPDIEVRSGGVDYVFSDGIGKISAALAHSIAQ 565
Query: 241 NCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPC 300
GF +TPSAFQIRYGGYKGVVAVDPTS KLSLR+SM KYKS +TSLDIL SKYQ C
Sbjct: 566 KFGFLSFTPSAFQIRYGGYKGVVAVDPTSLKKLSLRRSMSKYKSTNTSLDILGWSKYQAC 625
Query: 301 FLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKEL 360
+LNR++ITLLSTLG+RDH+F++KQ+E +AQL+AILTDP A EALELM+ GE+TNVLKE+
Sbjct: 626 YLNREVITLLSTLGVRDHIFQRKQKEAIAQLNAILTDPSSAQEALELMAPGESTNVLKEM 685
Query: 361 LMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQ 420
L CGYKP EPFL MMLQTF AS LL+LRTR RIFI GRAMMGCLDET TL GQ FVQ
Sbjct: 686 LACGYKPGAEPFLAMMLQTFCASKLLDLRTRARIFIPKGRAMMGCLDETRTLGYGQAFVQ 745
Query: 421 CSASRRREFLDNSCNNRSGE----LGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMV 476
S++R +F D+S R GE +++GK++VAKNPCLHPGD+RVL AV+VP+LHHMV
Sbjct: 746 YSSARHGQFRDHS---RGGEAVRNTQILKGKLIVAKNPCLHPGDVRVLEAVNVPALHHMV 802
Query: 477 DCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTI 536
DC+VFP KGKRPH NECSGSDLDGDVYFVCWD +LIPP FPPMDYT AP +L D+TI
Sbjct: 803 DCIVFPQKGKRPHANECSGSDLDGDVYFVCWDPDLIPPRTFPPMDYTAAPTTILDHDVTI 862
Query: 537 EDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAAT 596
E+V+EYF DY++NDSLG+ICNAH V AD +P ARS +C+ELA+LS+IAVDF KTGV A
Sbjct: 863 EEVQEYFTDYLLNDSLGIICNAHTVFADRDPLMARSKECIELARLSSIAVDFPKTGVPAK 922
Query: 597 IPSGLRVEIYPDFMEK-QDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDT 655
IP LRV+ YPDFMEK DK YESQRV+GKL+R V+DIAP T+ ++SFTKE+A +SYD
Sbjct: 923 IPRELRVKEYPDFMEKAADKRTYESQRVLGKLFRDVRDIAPDTSPVRSFTKEMARRSYDP 982
Query: 656 DMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEA 715
DMEVDGF+ +I +AF YK+ YDN+LGN+MDYYGIKTEAEI+SG IM++ KSFDKKRD ++
Sbjct: 983 DMEVDGFQKHIDEAFHYKSVYDNKLGNMMDYYGIKTEAEIISGSIMKVGKSFDKKRDFDS 1042
Query: 716 IIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFL 775
I ++++SL+K+ARAWF +ESD+S +D+YAKASAWY+V YHPSYWGRY EGMNR HFL
Sbjct: 1043 INYSIRSLRKQARAWF---DESDNSPDDLYAKASAWYYVTYHPSYWGRY-NEGMNRVHFL 1098
Query: 776 SFPWCIHDKLIEI 788
SFPWC +DKLI+I
Sbjct: 1099 SFPWCFYDKLIDI 1111
>gi|224099571|ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1133
Score = 1135 bits (2935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/791 (69%), Positives = 638/791 (80%), Gaps = 5/791 (0%)
Query: 4 IEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKV 63
IE+ALE L+HL+ECCYEP +W EQY+KY+ S SP ++LD GL+YV KV +TP KV
Sbjct: 318 IEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVLSLDAGLVYVYKVQITPCKV 377
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYER 123
+F GPE+++SNRV+R Y ++IDNFLR+SFVDE+L+K++ST +SP SS NE R T IY R
Sbjct: 378 FFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTDVSPRTSSRNELRRTAIYNR 437
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
+LSTL+NGIVIGDKKFE LAFS+SQ+++NS WMFASR LTAADIR MG F I+NVA+
Sbjct: 438 ILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTAADIRAWMGSFHKIRNVAR 497
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCG 243
YAARLGQSFGSS E L V S +IEIIPD+EV G Y FSDGIGKISAE A VA CG
Sbjct: 498 YAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLFSDGIGKISAEFARKVAIKCG 557
Query: 244 FTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLN 303
+TPSAFQIRY GYKGVVAVDPTSS KLSLR+SM KY+SE+T LD+LA+SKYQPCFLN
Sbjct: 558 CKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYESENTKLDVLAHSKYQPCFLN 617
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMC 363
RQLITLLSTLG+ DH FE+KQRE V QLDA+LTDPL+A EALELMS GENTN+LKE+L+C
Sbjct: 618 RQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEALELMSPGENTNILKEMLLC 677
Query: 364 GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA 423
GY+PD EPFL MMLQTFRAS LLELRT+TRIFI NGR+MMGCLDET TLE GQVFV+ S
Sbjct: 678 GYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEHGQVFVKFSG 737
Query: 424 SRRREFLDNS---CNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVV 480
SR R D+S G+ +++G VVVAKNPCLHPGD+R+L+AVDVP+LHHMVDCVV
Sbjct: 738 SRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLHPGDLRILKAVDVPALHHMVDCVV 797
Query: 481 FPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVE 540
FP KG RPH NECSGSDLDGD+YFVCWD ELIP Q PMDYTP P L D+TIE+VE
Sbjct: 798 FPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQISPMDYTPEPPLQLDHDVTIEEVE 857
Query: 541 EYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSG 600
EYF +YIVNDSLGVI NAH HAD E KA S C+ELA+ +IAVDF KTGV A IPS
Sbjct: 858 EYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVELARKFSIAVDFPKTGVPAEIPSN 917
Query: 601 LRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVD 660
LR YPDFMEK DK YES+ VIGKL+R VKDIAP T++I+SFT +VA Q YD DMEVD
Sbjct: 918 LRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIRSFTSDVARQCYDPDMEVD 977
Query: 661 GFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAV 720
GFEDYI DAF YK+ YD +LGNLM+YYGIKTEAE+LSG M+M+KSF KKRD EAI AV
Sbjct: 978 GFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSFMKMSKSFTKKRDAEAIGMAV 1037
Query: 721 KSLKKEARAWFNKKNES-DSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPW 779
+SLKKEAR+WFN+K DS +DV AKASAWYHV YH +YWG Y EGMNR HFLSFPW
Sbjct: 1038 RSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHNYWGCYN-EGMNRDHFLSFPW 1096
Query: 780 CIHDKLIEIKR 790
C++DKLI+IKR
Sbjct: 1097 CVYDKLIQIKR 1107
>gi|225424395|ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
Length = 1109
Score = 1127 bits (2914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 547/797 (68%), Positives = 645/797 (80%), Gaps = 9/797 (1%)
Query: 1 MEYIEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTP 60
+ +IEHALE L++L ECCYEPVRWL EQYR Y+ S++ SPA++LD GL+YV +V +TP
Sbjct: 305 ISFIEHALEKLYYLEECCYEPVRWLHEQYRTYI-SKQVAGSPAISLDTGLVYVRRVQITP 363
Query: 61 SKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTI 120
KVYF GPE+++SNRV+R+YP++IDNFLR+SF+DE+ +K++STV+SP +S NE R T +
Sbjct: 364 CKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHSTVISPRMS--NEGRRTGV 421
Query: 121 YERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKN 180
Y R+LS L+NGIVIGDKKF+ LA S+SQ++DNS WMFASRP LTAADIR MGDF I+N
Sbjct: 422 YRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGLTAADIRSRMGDFSQIRN 481
Query: 181 VAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAK 240
VAKYAARLGQSF SS+E L V +IEIIPD+E DG TY FSDGIGKISAELA VA
Sbjct: 482 VAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDGTTYVFSDGIGKISAELAHRVAI 541
Query: 241 NCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPC 300
CG TPSAFQIRYGGYKGVVAVDPTSS KLSLRKSM KY+SE+T+LD+L+ SKY+PC
Sbjct: 542 KCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESENTNLDVLSWSKYRPC 601
Query: 301 FLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKEL 360
FLNRQLITLLSTLG++DHVFEKKQRE V QLD IL DPL+A EALELMS GENTN+LKE+
Sbjct: 602 FLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQEALELMSPGENTNILKEM 661
Query: 361 LMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQ 420
LMCGYKPD EPFL MMLQTFRA+ LLELRT+TRIF+ NGR+MMGCLDET TLE G+VFVQ
Sbjct: 662 LMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQ 721
Query: 421 CSAS-RRREFLDNSCNNRSGELG---VVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMV 476
S + R+ F D+ SG ++EGKVVVAKNPCLHPGD+R+L AVDVP+LHHMV
Sbjct: 722 ISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVAKNPCLHPGDVRILSAVDVPALHHMV 781
Query: 477 DCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTI 536
DCVVFP KG RPH +ECSGSDLDGD+YFVCWDH+LIPP Q PMDYTPAP KVL D+ I
Sbjct: 782 DCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPPRQINPMDYTPAPTKVLDHDVMI 841
Query: 537 EDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAAT 596
E+VEEYF +YI ND LG+I NAH V AD E DKA C ELAKL +IA++F KTGV A
Sbjct: 842 EEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPPCKELAKLFSIALEFPKTGVPAE 901
Query: 597 IPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTD 656
IP L V+ YPDFMEK +K YESQ VIGKL+R VKD+AP ++SFT++VAMQSYD D
Sbjct: 902 IPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHNYDVRSFTRDVAMQSYDAD 961
Query: 657 MEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAI 716
MEVDGFEDY+ DAF YK++YD +LG+LMD GI+TE+EILSG IM+M+KSFDK++D EAI
Sbjct: 962 MEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESEILSGSIMKMSKSFDKRKDAEAI 1021
Query: 717 IFAVKSLKKEARAWFNKKNESD-SSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFL 775
AV+SL+KEAR WFNK + +DVYA ASAWYHV YHP YWG Y EGM HFL
Sbjct: 1022 ALAVRSLRKEARTWFNKMGSGTYAGADDVYAIASAWYHVTYHPYYWGCYN-EGMYHDHFL 1080
Query: 776 SFPWCIHDKLIEIKRGK 792
SFPWC++DKLI+IKR K
Sbjct: 1081 SFPWCVYDKLIQIKRDK 1097
>gi|157152684|gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
Length = 1117
Score = 1102 bits (2849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/795 (67%), Positives = 637/795 (80%), Gaps = 11/795 (1%)
Query: 4 IEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKV 63
IEHALE L++L+ECCY+PVRWL EQY +Y+ R+ SP++ LDDGL+YV +VLVTP KV
Sbjct: 309 IEHALEKLYYLKECCYDPVRWLTEQYDEYLKRRQLPKSPSITLDDGLVYVRRVLVTPCKV 368
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYER 123
YF GPE+++SNRV+R+Y ++IDNFLR+SFVDE+ +K++ST L P S+ N R T IY R
Sbjct: 369 YFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIHSTDLLPRASTGNGVR-TDIYLR 427
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
+LSTLRNG VIGDKKFE LAFS+SQ++DNS+WMFASRP LTA DIR MG F+ I+NVAK
Sbjct: 428 ILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGGFQQIRNVAK 487
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCG 243
YAARLGQSFGSSRE L V ++E+IPDV G Y FSDGIGKISA+ A VA CG
Sbjct: 488 YAARLGQSFGSSRETLSVGRHEVEVIPDVVCSLHGTNYIFSDGIGKISADFARRVAVKCG 547
Query: 244 FTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLN 303
YTPS FQIRYGGYKGVVAVDP SS KLSLR SMLKY+S + LD+L SKYQPC+LN
Sbjct: 548 LQ-YTPSCFQIRYGGYKGVVAVDPYSSMKLSLRNSMLKYESNNIKLDVLGWSKYQPCYLN 606
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMC 363
RQL+TLLSTLG++D VFE+KQ E V QLDAIL D LKA EALELMS GENTN+LKE+L C
Sbjct: 607 RQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDTLKAQEALELMSPGENTNILKEMLNC 666
Query: 364 GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA 423
GY PD EPFL MMLQTFRAS LL+LRTR+RIFI NGR MMGCLDE+ TLE GQVFVQ +
Sbjct: 667 GYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTG 726
Query: 424 SRRREFLDNSCN-NRSGELG---VVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
+ RR+F + S N SG ++EG VVVAKNPCLHPGD+RVLRAVDVP+LHHMVDCV
Sbjct: 727 TGRRQFYEESHPFNDSGSTNCDFILEGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCV 786
Query: 480 VFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDV 539
VFP KGKRPH NECSGSDLDGD+YFVCWD +L+PP QF PMDYTPAP L D+TIE+V
Sbjct: 787 VFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLVPPRQFQPMDYTPAPSTQLDHDVTIEEV 846
Query: 540 EEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPS 599
EEYF +YIVNDSLG+I NAHVV AD EPD A S+ C +LA+L +IAVDF KTGV A IPS
Sbjct: 847 EEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPS 906
Query: 600 GLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEV 659
LR + YPDFMEK DK Y S++VIGKL++ VKD P ++I +FT +VA +SYD DM V
Sbjct: 907 QLRPKEYPDFMEKPDKPTYHSEKVIGKLFQKVKDKTPQASSIANFTMDVARKSYDGDMIV 966
Query: 660 DGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFA 719
+GFEDYI +AF YK+EYDN+LGNLMDYYGIKTEAEILSG IM+ +K+FD+++D +AI A
Sbjct: 967 NGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDADAIGVA 1026
Query: 720 VKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPW 779
V+SL+KEAR WF ++++ D D+ AKASAWYHV YH +YWG Y EG+ R HF+SFPW
Sbjct: 1027 VRSLRKEARTWFKRRSDID----DMLAKASAWYHVTYHHTYWGFY-NEGLKRDHFISFPW 1081
Query: 780 CIHDKLIEIKRGKQR 794
CI+D+LI+IK+ K R
Sbjct: 1082 CIYDQLIQIKKAKAR 1096
>gi|449457379|ref|XP_004146426.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|449491619|ref|XP_004158954.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase 1a [Cucumis sativus]
Length = 1130
Score = 1101 bits (2848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/791 (67%), Positives = 639/791 (80%), Gaps = 6/791 (0%)
Query: 1 MEYIEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTP 60
+E++EHALE LFHL+EC Y+P +L EQYRKY SR SP ++LDDGL+YV +V +TP
Sbjct: 316 IEFVEHALEKLFHLKECNYDPSNFLTEQYRKY--SRHPPNSPVISLDDGLVYVRRVQITP 373
Query: 61 SKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTI 120
KV+F GPE+++SNRV+R + IDNFLR+SFVDE+ DK+ ST L P +SS +E+ T I
Sbjct: 374 CKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLPRMSSKSEDGKTDI 433
Query: 121 YERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKN 180
Y R+LS L+NGIVIGDK F+ LAFS+SQ++DNS+WMFAS P++ AA IR MGDFR IKN
Sbjct: 434 YRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAYIRAWMGDFRHIKN 493
Query: 181 VAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAK 240
AKYAARLGQSFGSS EAL V S++ EIIPD+EV+ I Y FSDGIGKIS++ A+ VA
Sbjct: 494 PAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGIGKISSKFAKEVAA 553
Query: 241 NCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPC 300
CGF PSAFQIRYGGYKGVVAVDP S+ KLSLRKSM K++S++T LD+L +SKYQPC
Sbjct: 554 KCGFQA-VPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTKLDVLGHSKYQPC 612
Query: 301 FLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKEL 360
FLNRQLITL+STLG+RD +FEKKQ E V QLDAILTDPLKA EALELMS GENTN+LKE+
Sbjct: 613 FLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELMSPGENTNILKEM 672
Query: 361 LMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQ 420
L CGY+PDVEP+L MMLQTFRAS LLELRT++RIFI NGRAMMGCLDET TLE GQVFVQ
Sbjct: 673 LKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDETRTLEYGQVFVQ 732
Query: 421 CSASRRREFLDNSCNNRSGELG--VVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDC 478
S+ R R ++ NR G V+EG V VAKNPCLHPGD+RVL+AV++P L+HMVDC
Sbjct: 733 ISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKAVNIPGLYHMVDC 792
Query: 479 VVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIED 538
VVFP KG RPH NECSGSDLDGD+YFVCWD ELIP Q PPMDYTPAP L RD+T ED
Sbjct: 793 VVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAPPNELDRDVTTED 852
Query: 539 VEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIP 598
++EYF +Y+VNDSLG+I NAH AD E KARS+ CLELAKL ++AVDF KTGV A IP
Sbjct: 853 IQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVAVDFPKTGVPAIIP 912
Query: 599 SGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDME 658
S L V+ +PDFMEK D+ YES +VIGKL+RAVKDIAP + I+SFT++VA + YD DME
Sbjct: 913 SHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTRDVARRCYDCDME 972
Query: 659 VDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIF 718
V+GFEDY+ DAF +K+ YD +LGNL+DYYGIK+EAE+LSG IM M+KSF ++RD EAI
Sbjct: 973 VEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKSFTRRRDAEAINL 1032
Query: 719 AVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFP 778
AV+SL+KEAR WFN + +DS+ +D++AKASAWY+V YH SYWG Y EGM R H+LSFP
Sbjct: 1033 AVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYN-EGMKRDHYLSFP 1091
Query: 779 WCIHDKLIEIK 789
WC++DKL++IK
Sbjct: 1092 WCVYDKLMQIK 1102
>gi|350537951|ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase [Solanum lycopersicum]
Length = 1114
Score = 1101 bits (2847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/796 (67%), Positives = 640/796 (80%), Gaps = 13/796 (1%)
Query: 4 IEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKV 63
IEHALE L++++ECCY+PVRWL EQY Y+ R+ SP++ LDDGL+YV +VLVTP KV
Sbjct: 308 IEHALEKLYYIKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKV 367
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYER 123
YF GPE+++SNRV+R+Y ++IDNFLR+SFVDE+ +KLYST L P +ST T IYER
Sbjct: 368 YFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPK-ASTGSGVRTNIYER 426
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
+LSTLR G VIGDKKFE LAFS+SQ++DNS+WMFASRP LTA DIR MGDF IKNVAK
Sbjct: 427 ILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRAWMGDFSQIKNVAK 486
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCG 243
YAARLGQSFGSSRE L V +IE+IPDV+V G +Y FSDGIGKIS + A VA CG
Sbjct: 487 YAARLGQSFGSSRETLSVLRHEIEVIPDVKVH--GTSYVFSDGIGKISGDFAHRVASKCG 544
Query: 244 FTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLN 303
YTPSAFQIRYGGYKGVV VDP SS KLSLRKSM KY+S++ LD+L SKYQPC+LN
Sbjct: 545 LQ-YTPSAFQIRYGGYKGVVGVDPDSSMKLSLRKSMSKYESDNIKLDVLGWSKYQPCYLN 603
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMC 363
RQLITLLSTLG++D V E+KQ+E V QLDAIL D LKA EALELMS GENTN+LK +L C
Sbjct: 604 RQLITLLSTLGVKDEVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNC 663
Query: 364 GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA 423
GYKPD EPFL MMLQTFRAS LL+LRTR+RIFI NGR MMGCLDE+ TLE GQVFVQ +
Sbjct: 664 GYKPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTG 723
Query: 424 SRRREFLDN---SCNNRSGELG-VVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
+ EF D+ N+RS +++G VVVAKNPCLHPGD+RVL+AV+V +LHHMVDCV
Sbjct: 724 AGHGEFSDDLHPFNNSRSTNSNFILKGNVVVAKNPCLHPGDIRVLKAVNVRALHHMVDCV 783
Query: 480 VFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDV 539
VFP KGKRPH NECSGSDLDGD+YFVCWD ++IPP Q PM+Y PAP L D+TIE+V
Sbjct: 784 VFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEV 843
Query: 540 EEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPS 599
EEYF +YIVNDSLG+I NAHVV AD EPD A S+ C +LA+L +IAVDF KTGV A IPS
Sbjct: 844 EEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPS 903
Query: 600 GLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEV 659
LR + YPDFM+K DKT Y S+RVIGKL+R VKD AP ++I +FT++VA +SYD DMEV
Sbjct: 904 QLRPKEYPDFMDKPDKTSYISERVIGKLFRKVKDKAPQASSIATFTRDVARRSYDADMEV 963
Query: 660 DGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFA 719
DGFEDYI +AF YKTEYDN+LGNLMDYYGIKTEAEILSG IM+ +K+FD+++D EAI A
Sbjct: 964 DGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDAEAISVA 1023
Query: 720 VKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPW 779
V++L+KEARAWF ++N+ D D+ KASAWYHV YHP+YWG Y +G+ R HF+SFPW
Sbjct: 1024 VRALRKEARAWFKRRNDID----DMLPKASAWYHVTYHPTYWGCY-NQGLKRAHFISFPW 1078
Query: 780 CIHDKLIEIKRGKQRS 795
C++D+LI+IK+ K R+
Sbjct: 1079 CVYDQLIQIKKDKARN 1094
>gi|4138282|emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
Length = 1116
Score = 1100 bits (2844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/795 (66%), Positives = 637/795 (80%), Gaps = 11/795 (1%)
Query: 4 IEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKV 63
IEHALE L++L+ECCY+PVRWL EQY +Y+ R+ SP + LDDGL+YV +V+VTP KV
Sbjct: 308 IEHALEKLYYLKECCYDPVRWLTEQYDEYLKGRQLPKSPPITLDDGLVYVRRVVVTPCKV 367
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYER 123
YF GPE+++SNRV+R+Y ++I+NFLR+SFVDE+ +K++ST L P S+ N R T IYER
Sbjct: 368 YFCGPEVNVSNRVLRNYSEDINNFLRVSFVDEEWEKIHSTDLLPRASTGNGTR-TDIYER 426
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
+LSTLRNG +IGDK+FE LAFS+SQ++DNS+WMFASRP LTA DIR MGDFR I+NVAK
Sbjct: 427 ILSTLRNGFIIGDKRFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFRQIRNVAK 486
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCG 243
YAARLGQSFGSSRE L V ++E+IPDV G Y FSDGIGKISA+ A V CG
Sbjct: 487 YAARLGQSFGSSRETLSVGRHEVEVIPDVACSLHGTNYIFSDGIGKISADFAHRVTIKCG 546
Query: 244 FTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLN 303
YTPS+FQIRYGGYKGVVAVDP SS KLSLRKSMLKY+S + LD+L SKYQPC+LN
Sbjct: 547 LQ-YTPSSFQIRYGGYKGVVAVDPYSSMKLSLRKSMLKYESNNIKLDVLGWSKYQPCYLN 605
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMC 363
RQL+TLLSTLG+ D V E+KQ E V QLDAIL D LKA EALELMS GENTN+LKE+L C
Sbjct: 606 RQLVTLLSTLGVIDDVLEQKQNEAVDQLDAILHDSLKAQEALELMSPGENTNILKEMLNC 665
Query: 364 GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA 423
GY PD EPFL MMLQTFRAS LL+LRTRTRIFI NGR MMGCLDE+ TLE GQVFVQ S
Sbjct: 666 GYMPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPNGRTMMGCLDESRTLEYGQVFVQFSG 725
Query: 424 SRRREFLDNSCN-NRSGELG---VVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
+ RR+F + S N SG +++G VVVAKNPCLHPGD+RVLRAVDVP+LHHMVDCV
Sbjct: 726 AGRRQFFEESHPFNDSGSANCDFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCV 785
Query: 480 VFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDV 539
VFP KGKRPH NECSGSDLDGD+YFVCWD +LIPP Q MDYTPAP L D+TIE+V
Sbjct: 786 VFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQVQSMDYTPAPTTQLDHDVTIEEV 845
Query: 540 EEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPS 599
EEYF +YI+NDSLG+I NAHVV AD EPD A S+ C +LA+L +IAVDF KTGV A IPS
Sbjct: 846 EEYFTNYIINDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPS 905
Query: 600 GLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEV 659
LR + YPDFMEK DK Y S++VIGKL++ VK+ P ++I +FT++VA +SYD+DM V
Sbjct: 906 QLRPKEYPDFMEKPDKPTYPSEKVIGKLFQKVKNKTPQASSIATFTRDVARKSYDSDMIV 965
Query: 660 DGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFA 719
DGFEDYI +AF YK+EYDN+LGNLMDYYGIKTEAEILSG IM+ +K+FD+++D EAI A
Sbjct: 966 DGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDAEAIGVA 1025
Query: 720 VKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPW 779
V+ L+KEARAWF ++++ D D+ AKASAWYHV YH +YWG Y EG+ R HF+SFPW
Sbjct: 1026 VRCLRKEARAWFKRRSDID----DMLAKASAWYHVTYHHTYWGLY-NEGLKRDHFISFPW 1080
Query: 780 CIHDKLIEIKRGKQR 794
C++D+LI+IK+ K R
Sbjct: 1081 CVYDQLIQIKKAKAR 1095
>gi|146762448|gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 1093 bits (2826), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/792 (67%), Positives = 631/792 (79%), Gaps = 22/792 (2%)
Query: 3 YIEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSK 62
YI+HALE L++LRECCYEP RWL E+Y+ + SR++ SP ++LD+GL+YV +V +TPS+
Sbjct: 316 YIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTISLDEGLVYVRRVQITPSR 375
Query: 63 VYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYE 122
VYF GPEI++SNRV+R + ++IDNFLR+SFVDE+L+K++ST + R T IY+
Sbjct: 376 VYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNVQA------RGRRTGIYK 429
Query: 123 RVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVA 182
R+LSTLRNGIVIG+K+FE LAFS+SQ+++NS WMFASR LTAADIR MG+F I+NVA
Sbjct: 430 RILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTAADIRSWMGNFSKIRNVA 489
Query: 183 KYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNC 242
KYAARLGQSF SS E L V +I +IPD+E+ DGI Y FSDGIGKISAE A+ VA C
Sbjct: 490 KYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFSDGIGKISAEFAKKVAAKC 549
Query: 243 GFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFL 302
TPSAFQIR GG+KGVVA+DPTSS KLSLRKSM KY+SE+T LD+LA SKYQPCFL
Sbjct: 550 RLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESENTKLDVLAWSKYQPCFL 609
Query: 303 NRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLM 362
NRQLITLLSTLG+ D FEKKQRE V QL+A+LTDPL+A EALELMS GENTN+LKE+L+
Sbjct: 610 NRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQEALELMSPGENTNILKEMLL 669
Query: 363 CGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCS 422
CGYKPD EPFL MML+TFRAS LLELRT+ RIF+Q GR+MMGCLDET TL GQVFVQ S
Sbjct: 670 CGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGCLDETRTLNYGQVFVQFS 729
Query: 423 ASR-RREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVF 481
SR R F +V+GKV+VAKNPCLHPGD+RVLRAV+VP LHHMVDCVVF
Sbjct: 730 GSRSERRF-------------IVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVF 776
Query: 482 PAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEE 541
P KG RPH NECSGSDLDGDVYFVCWD ELIP Q PMDY+PA L ++TIE++EE
Sbjct: 777 PQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDYSPASTTKLDHEVTIEEIEE 836
Query: 542 YFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGL 601
YF +YIVNDSLG+I NAH AD EPDKA S CLELAKL +IAVDF KTGV A IP L
Sbjct: 837 YFTNYIVNDSLGIISNAHTAFADREPDKAMSRPCLELAKLFSIAVDFPKTGVPAEIPQEL 896
Query: 602 RVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDG 661
RV+ YPDFMEK DK Y+S VIGKL+R VK++AP +IK T+E + YD DMEV+G
Sbjct: 897 RVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNECSIKFLTREKMQRFYDPDMEVEG 956
Query: 662 FEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAVK 721
FEDYI DAF +K++YD +LGNLMDYYG+KTEAEIL G IM+M++SF KKRD EAI AV+
Sbjct: 957 FEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILGGGIMKMSRSFTKKRDAEAISMAVR 1016
Query: 722 SLKKEARAWFNKK-NESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWC 780
SL+KEAR+WFN+K +E D +D YAKASAWY+V YHPSYWG+Y EGMNR HFLSFPWC
Sbjct: 1017 SLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHPSYWGQYN-EGMNRDHFLSFPWC 1075
Query: 781 IHDKLIEIKRGK 792
++DKLI+IK+ K
Sbjct: 1076 VYDKLIQIKKEK 1087
>gi|142942402|gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1115
Score = 1091 bits (2822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/797 (67%), Positives = 638/797 (80%), Gaps = 14/797 (1%)
Query: 4 IEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKV 63
IE ALE L++L+ECCY+PVRWL EQY Y+ R+ SP++ LDDGL+YV +VLVTP KV
Sbjct: 308 IEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKV 367
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYER 123
YF GPE+++SNRV+R+Y ++IDNFLR+SFVDE+ +KLYST L P S+ N R T IYER
Sbjct: 368 YFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIR-TNIYER 426
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
+LSTLR G VIGDKKFE LAFS+SQ++DNS+WMFASR LT DIR MGDF IKNVAK
Sbjct: 427 ILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWMGDFSQIKNVAK 486
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCG 243
YAARLGQSFGSSRE L V +IE+IPDV+V G +Y FSDGIGKISA+ A VA CG
Sbjct: 487 YAARLGQSFGSSRETLSVLRHEIEVIPDVKVH--GTSYVFSDGIGKISADFARRVASKCG 544
Query: 244 FTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLN 303
YTPSAFQIRYGGYKGVVAVDP SS KLSLRKSM KY+S++ LD+L SKYQPC+LN
Sbjct: 545 LQ-YTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLN 603
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMC 363
RQL+TLLSTLG++D V E+KQ+E V QLDAIL D LKA EALELMS GENTN+LK +L C
Sbjct: 604 RQLVTLLSTLGVKDDVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGENTNILKAMLNC 663
Query: 364 GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA 423
GY PD EPFL MMLQTFRAS LL+LRTR+RIFI NGRAMMGCLDE+ TLE GQVFVQ +
Sbjct: 664 GYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTG 723
Query: 424 SRRREF---LDNSCNNRSGELG-VVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
+ REF L N+RS +++G VVVAKNPCLHPGD+RVLRAVDVP+LHHMVDCV
Sbjct: 724 AGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCV 783
Query: 480 VFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDV 539
VFP KGKRPH NECSGSDLDGD+YFVCWD ++IPP Q M+Y PAP L ++TIE+V
Sbjct: 784 VFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHNVTIEEV 843
Query: 540 EEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPS 599
EEYF +YIVNDSLG+I NAHVV AD EPD A S+ C +LA+L +IAVDF KTGV A IPS
Sbjct: 844 EEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPS 903
Query: 600 GLRVEIYPDFMEK-QDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDME 658
LR + YPDFM+K DKT Y S+RVIGKL+R VKD AP ++I FT++VA +SYD D+E
Sbjct: 904 QLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDVARRSYDADLE 963
Query: 659 VDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIF 718
VDGFEDYI +AF YKTEYDN+LGNLMDYYGIKTEAEILSG IM+ +K+FD+++D EAI
Sbjct: 964 VDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDAEAISV 1023
Query: 719 AVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFP 778
AV++L+KEAR WF ++N+ D D+ KASAWYHV YHP+YWG Y +G+ R HF+SFP
Sbjct: 1024 AVRALRKEARTWFKRRNDID----DMLPKASAWYHVTYHPTYWGCY-NQGLKRDHFISFP 1078
Query: 779 WCIHDKLIEIKRGKQRS 795
WC++D+LI+IK+ K R+
Sbjct: 1079 WCVYDQLIQIKKEKARN 1095
>gi|113205271|gb|AAT38699.2| RNA dependent RNA polymerase family protein [Solanum demissum]
Length = 963
Score = 1090 bits (2820), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/797 (67%), Positives = 638/797 (80%), Gaps = 14/797 (1%)
Query: 4 IEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKV 63
IE ALE L++L+ECCY+PVRWL EQY Y+ R+ SP++ LDDGL+YV +VLVTP KV
Sbjct: 156 IEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKV 215
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYER 123
YF GPE+++SNRV+R+Y ++IDNFLR+SFVDE+ +KLYST L P S+ N R T IYER
Sbjct: 216 YFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIR-TNIYER 274
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
+LSTLR G VIGDKKFE LAFS+SQ++DNS+WMFASR LT DIR MGDF IKNVAK
Sbjct: 275 ILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWMGDFSQIKNVAK 334
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCG 243
YAARLGQSFGSSRE L V +IE+IPDV+V G +Y FSDGIGKISA+ A VA CG
Sbjct: 335 YAARLGQSFGSSRETLSVLRHEIEVIPDVKVH--GTSYVFSDGIGKISADFARRVASKCG 392
Query: 244 FTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLN 303
YTPSAFQIRYGGYKGVVAVDP SS KLSLRKSM KY+S++ LD+L SKYQPC+LN
Sbjct: 393 LQ-YTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLN 451
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMC 363
RQL+TLLSTLG++D V E+KQ+E V QLDAIL D LKA EALELMS GENTN+LK +L C
Sbjct: 452 RQLVTLLSTLGVKDDVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGENTNILKAMLNC 511
Query: 364 GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA 423
GY PD EPFL MMLQTFRAS LL+LRTR+RIFI NGRAMMGCLDE+ TLE GQVFVQ +
Sbjct: 512 GYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTG 571
Query: 424 SRRREF---LDNSCNNRSGELG-VVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
+ REF L N+RS +++G VVVAKNPCLHPGD+RVLRAVDVP+LHHMVDCV
Sbjct: 572 AGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCV 631
Query: 480 VFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDV 539
VFP KGKRPH NECSGSDLDGD+YFVCWD ++IPP Q M+Y PAP L ++TIE+V
Sbjct: 632 VFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHNVTIEEV 691
Query: 540 EEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPS 599
EEYF +YIVNDSLG+I NAHVV AD EPD A S+ C +LA+L +IAVDF KTGV A IPS
Sbjct: 692 EEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPS 751
Query: 600 GLRVEIYPDFMEK-QDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDME 658
LR + YPDFM+K DKT Y S+RVIGKL+R VKD AP ++I FT++VA +SYD D+E
Sbjct: 752 QLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDVARRSYDADLE 811
Query: 659 VDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIF 718
VDGFEDYI +AF YKTEYDN+LGNLMDYYGIKTEAEILSG IM+ +K+FD+++D EAI
Sbjct: 812 VDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDAEAISV 871
Query: 719 AVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFP 778
AV++L+KEAR WF ++N+ D D+ KASAWYHV YHP+YWG Y +G+ R HF+SFP
Sbjct: 872 AVRALRKEARTWFKRRNDID----DMLPKASAWYHVTYHPTYWGCY-NQGLKRDHFISFP 926
Query: 779 WCIHDKLIEIKRGKQRS 795
WC++D+LI+IK+ K R+
Sbjct: 927 WCVYDQLIQIKKEKARN 943
>gi|113205254|gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
Length = 963
Score = 1090 bits (2818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/797 (67%), Positives = 638/797 (80%), Gaps = 14/797 (1%)
Query: 4 IEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKV 63
IE ALE L++L+ECCY+PVRWL EQY Y+ R+ SP++ LDDGL+YV +VLVTP KV
Sbjct: 156 IEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKV 215
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYER 123
YF GPE+++SNRV+R+Y ++IDNFLR+SFVDE+ +KLYST L P S+ N R T IYER
Sbjct: 216 YFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIR-TNIYER 274
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
+LSTLR G VIGDKK E LAFS+SQ++DNS+WMFASRP LTA DIR MGDF IKNVAK
Sbjct: 275 ILSTLRKGFVIGDKKIEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAK 334
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCG 243
YAARLGQSFGSS+E L V +IE+IPDV+V G +Y FSDGIGKISA+ A VA CG
Sbjct: 335 YAARLGQSFGSSKETLSVLRHEIEVIPDVKVH--GTSYVFSDGIGKISADFARRVASKCG 392
Query: 244 FTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLN 303
YTPSAFQIRYGGYKGVVAVDP SS KLSLRKSM KY+S++ LD+L SKYQPC+LN
Sbjct: 393 LQ-YTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCYLN 451
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMC 363
RQLITLLSTLG++D V E+KQ+E V QLDAIL D LKA EALELMS GENTN+LK +L C
Sbjct: 452 RQLITLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNC 511
Query: 364 GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA 423
GY PD EPFL MMLQTFRAS LL+LRT++RIFI NGRAMMGCLDE+ TLE GQVFVQ +
Sbjct: 512 GYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTG 571
Query: 424 SRRREF---LDNSCNNRSGELG-VVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
+ REF L N+RS +++G VVVAKNPCLHPGD+RVLRAVDVP+LHHMVDCV
Sbjct: 572 AGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCV 631
Query: 480 VFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDV 539
VFP KGKRPH NECSGSDLDGD+YFVCWD ++IPP Q PM+Y PAP L D+TIE+V
Sbjct: 632 VFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEV 691
Query: 540 EEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPS 599
EEYF +YIVNDSLG+I NAHVV AD EPD A S+ C +LA+L +IAVDF KTGV A IPS
Sbjct: 692 EEYFTNYIVNDSLGIISNAHVVFADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAEIPS 751
Query: 600 GLRVEIYPDFMEK-QDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDME 658
LR + YPDFM+K DKT Y S+RVIGKL+R VKD AP ++ FT++VA +SYD D+E
Sbjct: 752 QLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASSTAIFTRDVARRSYDADLE 811
Query: 659 VDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIF 718
VDGFEDYI +AF YKTEYD++LGNLMDYYGIKTEAEILSG IM+ +K+FD+++D EAI
Sbjct: 812 VDGFEDYIDEAFDYKTEYDSKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRRKDAEAISI 871
Query: 719 AVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFP 778
AV++L+KEAR WF + N+ D D+ KASAWYHV YHP+YWG Y +G+ R HF+SFP
Sbjct: 872 AVRALRKEARTWFKRHNDID----DMLPKASAWYHVTYHPTYWGCY-NQGLKRDHFISFP 926
Query: 779 WCIHDKLIEIKRGKQRS 795
WC++D+LI+IK+ K R+
Sbjct: 927 WCVYDQLIQIKKEKARN 943
>gi|4138343|emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]
Length = 775
Score = 1082 bits (2798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/784 (67%), Positives = 633/784 (80%), Gaps = 14/784 (1%)
Query: 4 IEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKV 63
IEHALE L++L+ECCY+PVRWL +QY +Y+ R+ SP++ LDDGL+YV +VLVTP KV
Sbjct: 2 IEHALEKLYNLKECCYDPVRWLTKQYDEYLKRRQLPKSPSITLDDGLMYVRRVLVTPCKV 61
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYER 123
YF GPE+++SNRV+R+Y ++IDNFLR+SFVDE+ +K++S L P + T IYER
Sbjct: 62 YFLGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIFSMDLLP--RANRNGIRTDIYER 119
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
+LSTL+NG+VIG KKFE LAFS+SQ++DNS+WMFASRP LTA DIR MGDF+ I+NVAK
Sbjct: 120 ILSTLQNGLVIGAKKFEFLAFSSSQLRDNSVWMFASRPGLTAYDIRTWMGDFQQIRNVAK 179
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCG 243
YAARLGQSFGSSRE L V +I+ IPDVEV G Y FSDGIGKISA+ A VAK CG
Sbjct: 180 YAARLGQSFGSSRETLSVGRHEIKYIPDVEVH--GTNYVFSDGIGKISADFAHRVAKKCG 237
Query: 244 FTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLN 303
+TPSAFQIRYGGYKGVVAVDP S KLSLRKSMLKY+S +T LD+L SKYQPC+LN
Sbjct: 238 LQ-HTPSAFQIRYGGYKGVVAVDPYSPMKLSLRKSMLKYESNNTKLDVLGWSKYQPCYLN 296
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMC 363
RQL+TL+STLG++D VF++KQ E VAQLDAIL D LKA EAL+LMS GENTN+LKE+L C
Sbjct: 297 RQLVTLMSTLGVKDEVFKRKQNEAVAQLDAILHDSLKAQEALDLMSPGENTNILKEMLNC 356
Query: 364 GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA 423
GY PD EPFL MMLQTFRAS LL+LRTRTRIFI GR+MMGCLDE+ TLE GQVFVQ +
Sbjct: 357 GYLPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPKGRSMMGCLDESRTLEYGQVFVQFTG 416
Query: 424 SRRREFLDNSCN-NRSGELG---VVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
+ R+F + S + N SG +++G VVVAKNPCLHPGD+RVL+AVDVP+LHHMVDCV
Sbjct: 417 AGGRQFYEESHHFNDSGSANYNFILKGNVVVAKNPCLHPGDIRVLKAVDVPALHHMVDCV 476
Query: 480 VFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDV 539
VFP KGKRPH NECSGSDLDGD+YFVCWD +LIPP Q PMDYTPAP L D+TIE+V
Sbjct: 477 VFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQVQPMDYTPAPSIQLDHDVTIEEV 536
Query: 540 EEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPS 599
EEYF +Y+VND LGVI NAHVV AD EP+ A S+ C+ELA+L +IAVDF KTGV A IPS
Sbjct: 537 EEYFTNYMVNDGLGVIANAHVVFADREPNMAMSDPCIELAQLFSIAVDFPKTGVPAEIPS 596
Query: 600 GLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEV 659
LR + YPDFMEK DKT Y S++VIGKL+R VKD ++I +FT++VA +SYDTD+EV
Sbjct: 597 QLRPKEYPDFMEKPDKTTYHSEKVIGKLFREVKDKTTQASSITTFTRDVARRSYDTDLEV 656
Query: 660 DGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFA 719
DGFEDYI +AF YK+EYD +LGNLMDYYGIKTEAE LSG IM+ +K+FD++RD EAI A
Sbjct: 657 DGFEDYIDEAFDYKSEYDKKLGNLMDYYGIKTEAETLSGGIMKASKTFDRRRDAEAIGVA 716
Query: 720 VKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPW 779
V+SL+KEAR WF ++++ D D+ AKASAWYHVAYHP+YWG Y EG+ R HF+SFPW
Sbjct: 717 VRSLRKEARTWFKRRSDID----DLLAKASAWYHVAYHPTYWGCYN-EGLKRDHFISFPW 771
Query: 780 CIHD 783
C++D
Sbjct: 772 CVYD 775
>gi|113205257|gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 1139
Score = 1081 bits (2795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/826 (65%), Positives = 638/826 (77%), Gaps = 46/826 (5%)
Query: 4 IEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKV 63
IE ALE L++L+ECCY+PVRWL EQY Y+ R+ SP++ LDDGL+YV +VLVTP KV
Sbjct: 300 IEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKV 359
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYER 123
YF GPE+++SNRV+R+Y ++IDNFLR+SFVDE+ +KLYST L P S+ N R T IYER
Sbjct: 360 YFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIR-TNIYER 418
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
+LSTLR G VIGDKKFE LAFS+SQ++DNS+WMFASRP LTA DIR MGDF IKNVAK
Sbjct: 419 ILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAK 478
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCG 243
YAARLGQSFGSS+E L V +IE+IPDV+V G +Y FSDGIGKISA+ A VA CG
Sbjct: 479 YAARLGQSFGSSKETLSVLRHEIEVIPDVKVH--GTSYVFSDGIGKISADFARRVASKCG 536
Query: 244 FTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLN 303
YTPSAFQIRYGGYKGVVAVDP SS KLSLRKSM KY+S++ LD+L SKYQPC+LN
Sbjct: 537 LQ-YTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLN 595
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMC 363
RQL+TLLSTLG++D V E+KQ+E V QLDAIL D LKA EALELMS GENT +LK +L C
Sbjct: 596 RQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTTILKAMLNC 655
Query: 364 GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA 423
GY PD EPFL MMLQTFRAS LL+LRTR+RIFI NGRAMMGCLDE+ TLE GQVFVQ +
Sbjct: 656 GYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTG 715
Query: 424 SRRREF---LDNSCNNRSGELG-VVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
+ REF L N+RS +++G VVVAKNPCLHPGD+RVLRAVDVP+LHHMVDCV
Sbjct: 716 AGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCV 775
Query: 480 VFPAKGK---------------------------------RPHTNECSGSDLDGDVYFVC 506
VFP KGK RPH NECSGSDLDGD+YFVC
Sbjct: 776 VFPQKGKRLGMYFNCLPTSEVEVKSAYTLPSSDPTLCFDDRPHPNECSGSDLDGDIYFVC 835
Query: 507 WDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLE 566
WD ++IPP Q PM+Y PAP L D+TIE+VEEYF +YIVNDSLG+I NAHVV AD E
Sbjct: 836 WDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADRE 895
Query: 567 PDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGK 626
PD A S+ C +LA+L +IAVDF KTGV A IPS LR + YPDFM+K DKT Y S+RVIGK
Sbjct: 896 PDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPDKTTYISERVIGK 955
Query: 627 LYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDY 686
L+R VKD AP ++I FT++VA +SYD D+EVDGFEDYI +AF YKTEYDN+LGNLMDY
Sbjct: 956 LFRKVKDKAPQASSIAIFTRDVARRSYDVDLEVDGFEDYIDEAFDYKTEYDNKLGNLMDY 1015
Query: 687 YGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESDSSHEDVYA 746
YGIKTEAEILSG IM+ +K+FD+++D EAI AV++L+KEAR WF ++N+ D D+
Sbjct: 1016 YGIKTEAEILSGGIMKTSKTFDRRKDAEAISIAVRALRKEARTWFKRRNDID----DMLP 1071
Query: 747 KASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIKRGK 792
KASAWYHV YHP+YWG Y +G+ R HF+SFPWC++D+LI+IK+ K
Sbjct: 1072 KASAWYHVTYHPTYWGCY-NQGLKRDHFISFPWCVYDQLIQIKKEK 1116
>gi|90823307|gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 1081 bits (2795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 527/792 (66%), Positives = 629/792 (79%), Gaps = 22/792 (2%)
Query: 3 YIEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSK 62
YI+HALE L++LRECCYEP RWL E+Y+ + SR++ SP ++LD+GL+YV +V +TPS+
Sbjct: 316 YIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTISLDEGLVYVRRVQITPSR 375
Query: 63 VYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYE 122
VYF GPEI++SNRV+R + ++IDNFLR+SFVDE+L+K++ST + R T IY+
Sbjct: 376 VYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNVQA------RGRRTGIYK 429
Query: 123 RVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVA 182
R+LSTLRNGIVIG+K+FE LAFS+SQ+++NS WMFASR LTAADIR MG+F I+NVA
Sbjct: 430 RILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTAADIRSWMGNFSKIRNVA 489
Query: 183 KYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNC 242
KYAARLGQSF SS E L V +I +IPD+E+ DGI Y F DGIGKISAE A+ VA C
Sbjct: 490 KYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFPDGIGKISAEFAKKVAAKC 549
Query: 243 GFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFL 302
TPSAFQIR GG+KGVVA+DPTSS KLSLRKSM KY+SE+T LD+LA SKYQPCFL
Sbjct: 550 RLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESENTKLDVLAWSKYQPCFL 609
Query: 303 NRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLM 362
NRQLITLLSTLG+ D+ FEKKQRE V QL+A+LTDPL+A EALELMS GENTN+LKE+L+
Sbjct: 610 NRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQEALELMSPGENTNILKEMLL 669
Query: 363 CGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCS 422
CGYKPD EPFL MML+TFRAS LLELRT+ RIF+Q GR+MMGCLDET TL GQVFVQ S
Sbjct: 670 CGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGCLDETRTLNYGQVFVQFS 729
Query: 423 ASR-RREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVF 481
SR R F +V+GKV+VAKNPCLHPGD+RVLRAV+VP LHHMVDCVVF
Sbjct: 730 GSRSERRF-------------IVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVF 776
Query: 482 PAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEE 541
P KG RPH NECSGSDLDGDVYFVCWD ELIP Q PMDY+PA L ++TIE++EE
Sbjct: 777 PQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDYSPASTTKLDHEVTIEEIEE 836
Query: 542 YFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGL 601
YF +YIVNDSLG+I NAH AD EP KA S CLELAKL +IAVDF KTGV A IP L
Sbjct: 837 YFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCLELAKLFSIAVDFPKTGVPAEIPQEL 896
Query: 602 RVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDG 661
RV+ +PDFMEK DK Y+S VIGKL+R VK++AP +IK T+E + YD DMEV+G
Sbjct: 897 RVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPNECSIKLLTREKMKRFYDPDMEVEG 956
Query: 662 FEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAVK 721
F DYI DAF YK++YD +LGNLMDYYG+KTEAEILSG IM+M++SF KKRD E+I AV+
Sbjct: 957 FVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSGGIMKMSRSFTKKRDAESISMAVR 1016
Query: 722 SLKKEARAWFNKK-NESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWC 780
SL+KEAR+WFN+K +E D +D YAKASAWY+V YH SYWG+Y EGMNR HFLSFPWC
Sbjct: 1017 SLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHHSYWGQYN-EGMNRDHFLSFPWC 1075
Query: 781 IHDKLIEIKRGK 792
++DKLI+IK+ K
Sbjct: 1076 VYDKLIQIKKEK 1087
>gi|113205326|gb|AAT38754.2| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 1021
Score = 1065 bits (2755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/855 (62%), Positives = 640/855 (74%), Gaps = 72/855 (8%)
Query: 4 IEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKV 63
IE ALE L++L+ECCY+PVRWL EQY Y+ R+ SP++ LDDGL+YV +VLVTP KV
Sbjct: 156 IEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKV 215
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYER 123
YF GPE+++SNRV+R+Y ++IDNFLR+SFVDE+ +KLYST L P S+ N R T IYER
Sbjct: 216 YFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIR-TNIYER 274
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
+LSTLR G VIGDKKFE LAFS+SQ++DNS+WMFASRP LTA DIR MGDF IKNVAK
Sbjct: 275 ILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAK 334
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCG 243
YAARLGQSFGSS+E L V +IE+IPDV+V G +Y FSDGIGKISA+ A VA CG
Sbjct: 335 YAARLGQSFGSSKETLSVLRHEIEVIPDVKVH--GTSYVFSDGIGKISADFARRVASKCG 392
Query: 244 FTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLN 303
YTPSAFQIRYGGYKGVVAVDP SS KL+LRKSM KY+S++ LD+L SKYQPCFLN
Sbjct: 393 LQ-YTPSAFQIRYGGYKGVVAVDPYSSMKLTLRKSMSKYESDNNKLDVLGWSKYQPCFLN 451
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMC 363
RQLITLLSTLG+RD + E+KQ+E V QLDAIL D LKA EALELMS GENTN+LK +L C
Sbjct: 452 RQLITLLSTLGVRDDILEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNC 511
Query: 364 GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA 423
GY PD EPFL MMLQTFRAS LL+LRT++RIFI NGRAMMGCLDE+ TLE GQVFVQ +
Sbjct: 512 GYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTG 571
Query: 424 SRRREF---LDNSCNNRSGELG-VVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
+ REF L N+RS +++G VVVAKNPCLHPGD+RVLRAVDVP+LHHMVDCV
Sbjct: 572 AGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCV 631
Query: 480 VFPAKGKR---------------------------------PHTNECSGSDLDGDVYFVC 506
VFP KGKR PH NECSGSDLDGD+YFVC
Sbjct: 632 VFPQKGKRLGMYFNCFPTSEVEVKSAYTLPSSDPTLWYLTGPHPNECSGSDLDGDIYFVC 691
Query: 507 WDHELIPPLQFPPMDYTPAPEKVLARDMTIE-------------------------DVEE 541
WD ++IPP Q PM+Y PAP L D+TIE +VEE
Sbjct: 692 WDQDMIPPRQVQPMEYPPAPSIQLDHDVTIERGDWPVCATTVQVLRNSFSPVCLLQEVEE 751
Query: 542 YFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGL 601
YF +YIVNDSLG+I NAHVV AD EPD A S+ C +LA+L +IAVDF KTGV A IPS L
Sbjct: 752 YFTNYIVNDSLGIISNAHVVFADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAEIPSQL 811
Query: 602 RVEIYPDFMEK-QDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVD 660
R + YPDFM+K DKT Y S+RVIGKL+R VKD AP ++ FT++VA +SYD D+EVD
Sbjct: 812 RPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASSTAIFTRDVARRSYDADLEVD 871
Query: 661 GFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAV 720
GFEDYI +AF YKTEYDN+LGNLMDYYGIKTEAEILSG IM+ +K+FD+++D EAI AV
Sbjct: 872 GFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRRKDAEAISIAV 931
Query: 721 KSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWC 780
++L+KEAR WF ++N+ D D+ KASAWYHV YHP+YWG Y +G+ R HF+SFPWC
Sbjct: 932 RALRKEARTWFKRRNDID----DMLPKASAWYHVTYHPTYWGCY-NQGLKRDHFISFPWC 986
Query: 781 IHDKLIEIKRGKQRS 795
++D+LI+IK+ K R+
Sbjct: 987 VYDQLIQIKKEKARN 1001
>gi|113205194|gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solanum demissum]
Length = 1137
Score = 1062 bits (2746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/797 (65%), Positives = 625/797 (78%), Gaps = 28/797 (3%)
Query: 4 IEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKV 63
IE ALE L++L+ECCY+PVRWL EQY Y R+ SP++ LDDGL+YV +VLVTP KV
Sbjct: 344 IEQALEKLYYLKECCYDPVRWLTEQYDGYFKGRQPPKSPSITLDDGLVYVRRVLVTPCKV 403
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYER 123
YF GPE+++SNRV+R+Y ++IDNFLR+SFVDE+ +KLYST L P S+ N R T IYER
Sbjct: 404 YFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIR-TNIYER 462
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
+LSTLR G VIGDKKFE LAFS+SQ++DNS+WMFASR LTA DIR MGDF IKNVAK
Sbjct: 463 ILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTANDIRSWMGDFSQIKNVAK 522
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCG 243
YAAR GQSFGSSRE L V +IE+IPDV+V G +Y FSDGIGKISA+ A VA NCG
Sbjct: 523 YAARFGQSFGSSRETLSVLRHEIEVIPDVKVH--GTSYVFSDGIGKISADFARKVASNCG 580
Query: 244 FTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLN 303
YTPSAFQIRYGGYKGVVAVDP SS KLSLRKSM KY+S++ LD+L SKYQPC+LN
Sbjct: 581 LQ-YTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCYLN 639
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMC 363
RQL+TLLSTLG++D V E+KQ+E V QLDAIL D LKA EALELMS GENTN+LK +L C
Sbjct: 640 RQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNC 699
Query: 364 GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA 423
GY PD EPFL MMLQTFRAS LL+LRT++RIFI NGRAMMGCLDE+ TLE GQVFVQ +
Sbjct: 700 GYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTG 759
Query: 424 SRRREF---LDNSCNNRSGELG-VVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
+ REF L N+RS +++G VVVAKNPCLHPGD+RVLRAVDVP+LHHMVDCV
Sbjct: 760 AGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCV 819
Query: 480 VFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDV 539
VFP KGKRPH NECSGSDLDGD+YFVCWD ++IPP Q M++ P P L D+TIE+V
Sbjct: 820 VFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEFPPPPSIQLDHDVTIEEV 879
Query: 540 EEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPS 599
EEYF +YIVND LG+I NAHVV AD EPD A +DF KTGV A IPS
Sbjct: 880 EEYFTNYIVNDGLGIIANAHVVFADREPDMA--------------MMDFPKTGVPAEIPS 925
Query: 600 GLRVEIYPDFMEK-QDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDME 658
LR + YPDFM+K DKT Y S+RVIGKL+R VKD AP ++I FT++ A +SYDTD+E
Sbjct: 926 QLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDDARRSYDTDLE 985
Query: 659 VDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIF 718
VDGFEDYI +AF YKTEYDN+LGNLMDYYGIKTEAEILSG IM+ +K+FD+++D EAI
Sbjct: 986 VDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRRKDAEAISI 1045
Query: 719 AVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFP 778
AV++L+KEAR WF ++N+ D D+ KASAWYHV YHP+YWG Y +G+ R HF+SFP
Sbjct: 1046 AVRALRKEARTWFKRRNDID----DMLPKASAWYHVTYHPTYWGCY-NQGLKRDHFISFP 1100
Query: 779 WCIHDKLIEIKRGKQRS 795
WC++D+LI+IK+ K R+
Sbjct: 1101 WCVYDQLIQIKKEKARN 1117
>gi|297805194|ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297316317|gb|EFH46740.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
Length = 1097
Score = 1055 bits (2729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/787 (65%), Positives = 615/787 (78%), Gaps = 20/787 (2%)
Query: 4 IEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKV 63
I+H LE LF+L E CYEP RWL +QY++ + SP ++LDDGL+Y+ +V VTP++V
Sbjct: 309 IDHCLEKLFYLGESCYEPARWLRKQYKELSSKGKLPLSPTISLDDGLVYMYRVQVTPARV 368
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYER 123
YFSGPE+++SNRV+R Y I+NFLR+SFVDEDL+K+ S LSP S+ +R T +Y+R
Sbjct: 369 YFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDLSPRSST---QRRTKLYDR 425
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
+ S LR+GIVIGDKKFE LAFS+SQ+++NS WMFA LT+A IR MGDF I+NVAK
Sbjct: 426 IYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDGLTSAHIRAWMGDFDHIRNVAK 485
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCG 243
YAARLGQSF SSRE L+V S +IE+IPDVE+ G Y FSDGIGKISAE A VAK CG
Sbjct: 486 YAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFARRVAKKCG 545
Query: 244 FTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLN 303
T ++PSAFQIRYGGYKGVVAVDP SS KLSLRKSM K++SE+T LD+LA SKYQPC++N
Sbjct: 546 LTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMN 605
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMC 363
RQLITLLSTLGI+D VFEKKQRE V +LDAILTDPL+AHEAL LM+ GENTN+LK L++C
Sbjct: 606 RQLITLLSTLGIKDSVFEKKQREVVDRLDAILTDPLEAHEALGLMAPGENTNILKALILC 665
Query: 364 GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA 423
GYKPD EPFL MMLQ FRAS LLELRT+TRIFI GR+MMGCLDET TLE GQV VQ S
Sbjct: 666 GYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSD 725
Query: 424 SRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPA 483
R G ++ G VVVAKNPCLHPGD+RVL AV+VP+L+HMVDCVVFP
Sbjct: 726 PM-----------RPGRRFIITGPVVVAKNPCLHPGDVRVLEAVNVPALNHMVDCVVFPQ 774
Query: 484 KGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYF 543
KG RPH NECSGSDLDGD+YFVCWD ELIPP PMDYTP P ++L D+TIE+VEEYF
Sbjct: 775 KGLRPHPNECSGSDLDGDIYFVCWDQELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEYF 834
Query: 544 ADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRV 603
A+YIVNDSLG+I NAH AD EP KA S+ C+ELA+ ++AVDF KTGVAA IP L V
Sbjct: 835 ANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELARKFSVAVDFPKTGVAAEIPQHLHV 894
Query: 604 EIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFE 663
+ YPDFMEK DK YES+ VIGKL+R VK+ APP +IKSFT +VA++SYD DMEVDGFE
Sbjct: 895 KEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVALKSYDKDMEVDGFE 954
Query: 664 DYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAVKSL 723
+Y+ +AF YK YD +LGNLMDYYGIKTEAEILSG IM M+KSF K+RD E+I AV++L
Sbjct: 955 EYVDEAFHYKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRDAESIGRAVRAL 1014
Query: 724 KKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHD 783
+KE + FN E + S AKASAWYHV YH SYWG Y EG+NR HFLSF WC++D
Sbjct: 1015 RKETLSLFNATEEENES-----AKASAWYHVTYHSSYWGLYN-EGLNRDHFLSFAWCVYD 1068
Query: 784 KLIEIKR 790
KL+ IK+
Sbjct: 1069 KLVRIKK 1075
>gi|142942515|gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1065
Score = 1055 bits (2728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/766 (67%), Positives = 614/766 (80%), Gaps = 13/766 (1%)
Query: 4 IEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKV 63
IE ALE L++L+ECCY+PVRWL EQY Y+ R+ SP++ LDDGL+YV +VLVTP KV
Sbjct: 307 IEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKV 366
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYER 123
YF GPE+++SNRV+R+Y ++IDNFLR+SFVDE+ +KLYST L P S+ N R T IYER
Sbjct: 367 YFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIR-TNIYER 425
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
+LST++ G VIGDKKFE LAFS+SQ++DNS+WMFASRP LTA DIR MGDF IKNVAK
Sbjct: 426 ILSTMQKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAK 485
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCG 243
YAARLGQSFGSS+E L V +IE+IPDV+V G +Y FSDGIGKISA+ A VA CG
Sbjct: 486 YAARLGQSFGSSKETLSVLRHEIEVIPDVKVH--GTSYVFSDGIGKISADFARRVASKCG 543
Query: 244 FTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLN 303
YTPSAFQIRYGGYKGVVAVDP SS KLSLRKSM KY+S++ LD+L SKYQPC+LN
Sbjct: 544 LQ-YTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLN 602
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMC 363
RQLITLLSTLG++D + E+KQ+E V QLDAIL D LKA EALELMS GENTN+LK +L C
Sbjct: 603 RQLITLLSTLGVKDDILEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNC 662
Query: 364 GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA 423
GY PD EPFL MMLQTFRAS LL+LRT++RIFI NGRAMMGCLDE+ TLE GQVFVQ +
Sbjct: 663 GYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTG 722
Query: 424 SRRREF---LDNSCNNRSGELG-VVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
+ REF L N+RS +++G VVVAKNPCLHPGD+RVLRAVDVP+LHHMVDCV
Sbjct: 723 AGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCV 782
Query: 480 VFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDV 539
VFP KGKRPH NECSGSDLDGD+YFVCWD ++IPP Q PM+Y PAP L D+TIE+V
Sbjct: 783 VFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEV 842
Query: 540 EEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPS 599
EEYF +YIVNDSLG+I NAHVV AD EPD A S+ C +LA+L +IAVDF KTGV A IPS
Sbjct: 843 EEYFTNYIVNDSLGIISNAHVVFADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAEIPS 902
Query: 600 GLRVEIYPDFMEK-QDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDME 658
R + YPDFM+K DKT Y S+RVIGKLYR VKD AP ++ FT++VA +SYD D+E
Sbjct: 903 QWRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRDVARRSYDADLE 962
Query: 659 VDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIF 718
VDGFEDYI +AF YKTEYDN+LGNLMDYYGIKTEAEILSG IM+ +K+FD+++D EAI
Sbjct: 963 VDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRRKDAEAISI 1022
Query: 719 AVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRY 764
AV++L+KEAR WF ++N+ D D+ KASAWYHV YHP+YWG Y
Sbjct: 1023 AVRALRKEARTWFKRRNDID----DMLPKASAWYHVTYHPTYWGCY 1064
>gi|297849898|ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
Length = 1107
Score = 1054 bits (2726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/787 (65%), Positives = 614/787 (78%), Gaps = 20/787 (2%)
Query: 4 IEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKV 63
I+H LE LF+L E CYEP RWL +QY++ + SP ++LDDGL+Y+ +V VTP++V
Sbjct: 319 IDHCLEKLFYLGESCYEPARWLRKQYKELSSKGKLPLSPTISLDDGLVYMYRVQVTPARV 378
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYER 123
YFSGPE+++SNRV+R Y I+NFLR+SFVDEDL+K+ S LSP S+ +R T +Y+R
Sbjct: 379 YFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDLSPRSST---QRRTKLYDR 435
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
+ S LR+GIVIGDKKFE LAFS+SQ+++NS WMFA LT+A IR MGDF I+NVAK
Sbjct: 436 IYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIEGLTSAHIRAWMGDFDHIRNVAK 495
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCG 243
YAARLGQSF SSRE L+V S +IE+IPDVE+ G Y FSDGIGKISAE A VAK CG
Sbjct: 496 YAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFARRVAKKCG 555
Query: 244 FTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLN 303
T ++PSAFQIRYGGYKGVVAVDP SS KLSLRKSM K++SE+T LD+LA SKYQPC++N
Sbjct: 556 LTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMN 615
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMC 363
RQLITLLSTLG+ D VFEKKQRE V +LDAILTDPL+AHEAL LM+ GENTN+LK L++C
Sbjct: 616 RQLITLLSTLGVEDSVFEKKQREVVDRLDAILTDPLEAHEALGLMAPGENTNILKALILC 675
Query: 364 GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA 423
GYKPD EPFL MMLQ FRAS LLELRT+TRIFI GR+MMGCLDET TLE GQV VQ S
Sbjct: 676 GYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSD 735
Query: 424 SRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPA 483
R G ++ G VVVAKNPCLHPGD+RVL AV+VP+L+HMVDCVVFP
Sbjct: 736 PM-----------RPGRRFIITGPVVVAKNPCLHPGDVRVLEAVNVPALNHMVDCVVFPQ 784
Query: 484 KGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYF 543
KG RPH NECSGSDLDGD+YFVCWD ELIPP PMDYTP P ++L D+TIE+VEEYF
Sbjct: 785 KGLRPHPNECSGSDLDGDIYFVCWDQELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEYF 844
Query: 544 ADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRV 603
A+YIVNDSLG+I NAH AD EP KA S+ C+ELA+ ++AVDF KTGVAA IP L V
Sbjct: 845 ANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELARKFSVAVDFPKTGVAAEIPQHLYV 904
Query: 604 EIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFE 663
+ YPDFMEK DK YES+ VIGKL+R VK+ APP +IKSFT +VA++SYD DMEVDGFE
Sbjct: 905 KEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVALKSYDKDMEVDGFE 964
Query: 664 DYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAVKSL 723
+Y+ +AF YK YD +LGNLMDYYGIKTEAEILSG IM M+KSF K+RD E+I AV++L
Sbjct: 965 EYVDEAFHYKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRDAESIGRAVRAL 1024
Query: 724 KKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHD 783
+KE + FN E + S AKASAWYH+ YH SYWG Y EG+NR HFLSF WC++D
Sbjct: 1025 RKETLSLFNATEEENES-----AKASAWYHITYHSSYWGLYN-EGLNRDHFLSFAWCVYD 1078
Query: 784 KLIEIKR 790
KL+ IK+
Sbjct: 1079 KLVRIKK 1085
>gi|383100937|emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
Length = 1107
Score = 1053 bits (2723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/787 (65%), Positives = 614/787 (78%), Gaps = 20/787 (2%)
Query: 4 IEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKV 63
I+H LE LFHL E CYEP RWL +QY++ + SP ++LDDGL+Y+ +V VTP++V
Sbjct: 319 IDHCLEKLFHLGESCYEPARWLRKQYKELSSKGKLPLSPTISLDDGLVYMYRVQVTPARV 378
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYER 123
YFSGPE+++SNRV+R Y I+NFLR+SFVDEDL+K+ S LSP S+ +R T +Y+R
Sbjct: 379 YFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDLSPRSST---QRRTKLYDR 435
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
+ S LR+GIVIGDKKFE LAFS+SQ+++NS WMFA LT+A IR MGDF I+NVAK
Sbjct: 436 IYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDGLTSAHIRAWMGDFDHIRNVAK 495
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCG 243
YAARLGQSF SSRE L+V S +IE+IPDVE+ G Y FSDGIGKISAE A VAK CG
Sbjct: 496 YAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFARRVAKKCG 555
Query: 244 FTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLN 303
T ++PSAFQIRYGGYKGVVAVDP SS KLSLRKSM K++SE+T LD+LA SKYQPC++N
Sbjct: 556 LTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMN 615
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMC 363
RQLITLLSTLG++D VF+KKQRE V +LDAILTDPL+AHEAL LM+ GENTN+LK L++C
Sbjct: 616 RQLITLLSTLGVKDSVFKKKQREVVDRLDAILTDPLEAHEALGLMAPGENTNILKALILC 675
Query: 364 GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA 423
GYKPD EPFL MMLQ FRAS LLELRT+TRIFI GR+MMGCLDET TLE GQV VQ S
Sbjct: 676 GYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSD 735
Query: 424 SRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPA 483
R G ++ G VVVAKNPCLHPGD+RVL AV+VP+L+HMVDCVVFP
Sbjct: 736 PM-----------RPGRRFIITGPVVVAKNPCLHPGDVRVLEAVNVPALNHMVDCVVFPQ 784
Query: 484 KGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYF 543
KG RPH NECSGSDLDGD+YFVCWD ELIPP PMDYTP P ++L D+TIE+VEEYF
Sbjct: 785 KGLRPHPNECSGSDLDGDIYFVCWDQELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEYF 844
Query: 544 ADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRV 603
A+YIVNDSLG+I NAH AD EP KA S+ C+ELA+ ++AVDF KTGVAA IP L V
Sbjct: 845 ANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELARKFSVAVDFPKTGVAAEIPQHLHV 904
Query: 604 EIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFE 663
+ YPDFMEK DK YES+ VIGKL+R VK+ APP +IKSFT +VA++SYD DMEVDGFE
Sbjct: 905 KEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVALKSYDKDMEVDGFE 964
Query: 664 DYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAVKSL 723
+Y+ +AF YK YD +LGNLMDYYGIKTEAEILSG IM M+KSF K+RD E+I AV++L
Sbjct: 965 EYVDEAFHYKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRDAESIGRAVRAL 1024
Query: 724 KKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHD 783
+KE + FN E + S AKASAWYHV YH SYWG Y EG+NR HFL F WC++D
Sbjct: 1025 RKETLSLFNATEEENES-----AKASAWYHVTYHSSYWGLYN-EGLNRDHFLIFAWCVYD 1078
Query: 784 KLIEIKR 790
KL+ IK+
Sbjct: 1079 KLVRIKK 1085
>gi|15223906|ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName: Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1; AltName:
Full=RNA-directed RNA polymerase 1
gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19 [Arabidopsis thaliana]
gi|110737376|dbj|BAF00633.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana]
gi|332191105|gb|AEE29226.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 1042 bits (2694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/787 (65%), Positives = 613/787 (77%), Gaps = 19/787 (2%)
Query: 4 IEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKV 63
I+H LE LFHL ECCYEP WL ++Y+K++ + SP ++LDDGL+Y+ +V VTP++V
Sbjct: 318 IDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTPARV 377
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYER 123
YFSGPE+++SNRV+R Y I+NFLR+SFVDEDL+K+ S LSP S+ +R T +Y+R
Sbjct: 378 YFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDLSPRSST---QRRTKLYDR 434
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
+ S LR+GIVIGDKKFE LAFS+SQ+++NS WMFA +TAA IR MGDF I+NVAK
Sbjct: 435 IYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAK 494
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCG 243
YAARLGQSF SSRE L+V S +IE+IPDVE+ G Y FSDGIGKISAE A VA+ CG
Sbjct: 495 YAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFARKVARKCG 554
Query: 244 FTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLN 303
T ++PSAFQIRYGGYKGVVAVDP SS KLSLRKSM K++SE+T LD+LA SKYQPC++N
Sbjct: 555 LTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMN 614
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMC 363
RQLITLLSTLG+ D VFEKKQRE V +LDAILT PL+AHEAL LM+ GENTN+LK L++C
Sbjct: 615 RQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEALGLMAPGENTNILKALILC 674
Query: 364 GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA 423
GYKPD EPFL MMLQ FRAS LLELRT+TRIFI GR+MMGCLDET TLE GQV VQ S
Sbjct: 675 GYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSD 734
Query: 424 SRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPA 483
R G ++ G VVVAKNPCLHPGD+RVL+AV+VP+L+HMVDCVVFP
Sbjct: 735 PM-----------RPGRRFIITGPVVVAKNPCLHPGDVRVLQAVNVPALNHMVDCVVFPQ 783
Query: 484 KGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYF 543
KG RPH NECSGSDLDGD+YFVCWD EL+PP PMDYTP P ++L D+TIE+VEEYF
Sbjct: 784 KGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQILDHDVTIEEVEEYF 843
Query: 544 ADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRV 603
A+YIVNDSLG+I NAH AD EP KA S+ C+ELAK + AVDF KTGVAA IP L V
Sbjct: 844 ANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPKTGVAAVIPQHLYV 903
Query: 604 EIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFE 663
+ YPDFMEK DK YES+ VIGKL+R VK+ APP +IKSFT +VA +SYD DMEVDGFE
Sbjct: 904 KEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVASKSYDKDMEVDGFE 963
Query: 664 DYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAVKSL 723
+Y+ +AF K YD +LGNLMDYYGIKTEAEILSG IM M+KSF K+RD E+I AV++L
Sbjct: 964 EYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRDAESIGRAVRAL 1023
Query: 724 KKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHD 783
+KE + FN E ++ AKASAWYHV YH SYWG Y EG+NR HFLSF WC++D
Sbjct: 1024 RKETLSLFNASEEEENES----AKASAWYHVTYHSSYWGLYN-EGLNRDHFLSFAWCVYD 1078
Query: 784 KLIEIKR 790
KL+ IK+
Sbjct: 1079 KLVRIKK 1085
>gi|24935275|gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 1038 bits (2685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/787 (65%), Positives = 612/787 (77%), Gaps = 19/787 (2%)
Query: 4 IEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKV 63
I+H LE LFHL ECCYEP WL ++Y+K++ + SP ++LDDGL+Y+ +V VTP++V
Sbjct: 318 IDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTPARV 377
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYER 123
YFSGPE+++SNRV+R Y I+NFLR+SFVDEDL+K+ S LSP S+ +R T +Y+R
Sbjct: 378 YFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDLSPRSST---QRRTKLYDR 434
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
+ S LR+GIVIGDKKFE LAFS+SQ+++NS WMFA +TAA IR MGDF I+NVAK
Sbjct: 435 IYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAK 494
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCG 243
YAARLGQSF SSRE L+V S +IE+IPDVE+ G Y FSDGIGKISAE A VA+ CG
Sbjct: 495 YAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFARKVARKCG 554
Query: 244 FTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLN 303
T ++PSAFQIRYGGYKGVVAVDP SS KLSLRKSM K++SE+T LD+LA SKYQPC++N
Sbjct: 555 LTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMN 614
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMC 363
RQLITLLSTLG+ D VFEKKQRE V +LDAILT PL+AHEAL LM+ GENTN+LK L++C
Sbjct: 615 RQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEALGLMAPGENTNILKALILC 674
Query: 364 GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA 423
GYKPD EPFL MMLQ FRAS LLELRT+TRIFI GR+MMGCLDET TLE GQV VQ S
Sbjct: 675 GYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSD 734
Query: 424 SRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPA 483
R G ++ G VVVAKNPCLH GD+RVL+AV+VP+L+HMVDCVVFP
Sbjct: 735 PM-----------RPGRRFIITGPVVVAKNPCLHSGDVRVLQAVNVPALNHMVDCVVFPQ 783
Query: 484 KGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYF 543
KG RPH NECSGSDLDGD+YFVCWD EL+PP PMDYTP P ++L D+TIE+VEEYF
Sbjct: 784 KGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQILDHDVTIEEVEEYF 843
Query: 544 ADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRV 603
A+YIVNDSLG+I NAH AD EP KA S+ C+ELAK + AVDF KTGVAA IP L V
Sbjct: 844 ANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPKTGVAAVIPQHLYV 903
Query: 604 EIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFE 663
+ YPDFMEK DK YES+ VIGKL+R VK+ APP +IKSFT +VA +SYD DMEVDGFE
Sbjct: 904 KEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVASKSYDKDMEVDGFE 963
Query: 664 DYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAVKSL 723
+Y+ +AF K YD +LGNLMDYYGIKTEAEILSG IM M+KSF K+RD E+I AV++L
Sbjct: 964 EYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRDAESIGRAVRAL 1023
Query: 724 KKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHD 783
+KE + FN E ++ AKASAWYHV YH SYWG Y EG+NR HFLSF WC++D
Sbjct: 1024 RKETLSLFNASEEEENES----AKASAWYHVTYHSSYWGLYN-EGLNRDHFLSFAWCVYD 1078
Query: 784 KLIEIKR 790
KL+ IK+
Sbjct: 1079 KLVRIKK 1085
>gi|356499585|ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max]
Length = 1125
Score = 1030 bits (2663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/795 (65%), Positives = 623/795 (78%), Gaps = 10/795 (1%)
Query: 2 EYIEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPS 61
E+IE+ALE +++ +E CYEP +WL +QY+ Y+ S+ SPA++LD GL+YV +V +TP
Sbjct: 319 EFIEYALEKIYYSKEFCYEPTKWLTDQYKTYLESKNHPRSPAISLDTGLVYVRRVQITPC 378
Query: 62 KVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIY 121
KVYF GPE+++SNRV+R + + IDNFLR+SFVDE+LDKL+ST LS S ++ + T IY
Sbjct: 379 KVYFCGPEMNVSNRVLRHFREHIDNFLRVSFVDEELDKLFSTDLS----SRSQNKKTEIY 434
Query: 122 ERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA-SRPELTAADIRESMGDFRDIKN 180
R+LS L+NGIV+GDKKFE LAFS+SQ+++NS+WMFA + TAA IR+ MG+F I+N
Sbjct: 435 TRILSILKNGIVVGDKKFEFLAFSSSQLRENSLWMFAPTETGCTAAYIRKWMGNFSQIRN 494
Query: 181 VAKYAARLGQSFGSSREALHVDSSDIEIIPDVE-VEDDGITYCFSDGIGKISAELAEIVA 239
VAKYAARLGQSFGSS E L V ++EIIPDV+ + DG Y FSDGIGKIS E A+ VA
Sbjct: 495 VAKYAARLGQSFGSSTETLSVHRDEVEIIPDVKKLTYDGNEYVFSDGIGKISLEFAQKVA 554
Query: 240 KNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQP 299
K CG+ TPSAFQIRYGGYKGVVAVDP S KLSLRKSM KY S++T LD+LA SK+QP
Sbjct: 555 KKCGYDC-TPSAFQIRYGGYKGVVAVDPKSCYKLSLRKSMRKYDSDNTKLDVLARSKFQP 613
Query: 300 CFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKE 359
C+LNRQLI+LLSTLGI+D VFEKKQRE V QL+ ILTD LKA E L+LMS+GE TNVLKE
Sbjct: 614 CYLNRQLISLLSTLGIKDDVFEKKQRETVNQLNTILTDSLKAQEVLDLMSAGEITNVLKE 673
Query: 360 LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFV 419
+L+CGYKP+ EPFL MMLQTFRAS LLELR ++RIFI GRAMMGCLDET TLE GQVFV
Sbjct: 674 MLICGYKPNEEPFLSMMLQTFRASKLLELRLKSRIFIPKGRAMMGCLDETRTLEYGQVFV 733
Query: 420 QCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
Q S +R + D+ + + +V+GKVVVAKNPCLHPGD+RVL+AVDVP L+HMVDCV
Sbjct: 734 QFSNNRLQNLSDDFFSYDLPKNYMVKGKVVVAKNPCLHPGDVRVLQAVDVPDLYHMVDCV 793
Query: 480 VFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDV 539
VFP KG RPH NECSGSDLDGD+YFVCWDHELIP PMDYT L D+ IE+V
Sbjct: 794 VFPQKGPRPHPNECSGSDLDGDIYFVCWDHELIPSRPIDPMDYTAPATVELDHDVMIEEV 853
Query: 540 EEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPS 599
EEYFA+YIVNDSLG+I NAH V AD E KA S+QC++LA+L + AVDF KTGV A IP
Sbjct: 854 EEYFANYIVNDSLGIIANAHTVFADKEHLKAMSDQCVKLARLFSTAVDFPKTGVPAVIPP 913
Query: 600 GLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEV 659
L V+ YPDFMEK DK Y+S VIGKL+R VK+I+ +I SFTK VA SYD +MEV
Sbjct: 914 ELHVKEYPDFMEKPDKPTYKSHNVIGKLFREVKEISTSAGSITSFTKLVARDSYDHEMEV 973
Query: 660 DGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFA 719
DGF DY+ DAF +KT YD +LGNLMDYYGIKTEAEIL G IM+M+KSF+K+RD EAI A
Sbjct: 974 DGFMDYVDDAFYHKTNYDYKLGNLMDYYGIKTEAEILGGNIMKMSKSFNKRRDAEAINMA 1033
Query: 720 VKSLKKEARAWFNKK--NESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSF 777
V+SL+KEARAWFN+ + DS DVYAKASAWYHV YHPSYWG Y EGMNR H+LSF
Sbjct: 1034 VRSLRKEARAWFNENSSGDVDSGSSDVYAKASAWYHVTYHPSYWGCY-NEGMNRDHYLSF 1092
Query: 778 PWCIHDKLIEIKRGK 792
WC++ L++IK+ K
Sbjct: 1093 SWCVYPLLVQIKKEK 1107
>gi|449457381|ref|XP_004146427.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|449491623|ref|XP_004158955.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|316989901|gb|ADU77016.1| RNA-dependent RNA polymerase 1b [Cucumis sativus]
Length = 1115
Score = 1029 bits (2661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/797 (62%), Positives = 614/797 (77%), Gaps = 13/797 (1%)
Query: 4 IEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKV 63
I+HAL+ L HL+ECCY P +WL+E+YRKY + P + L++GL+YV++V VTP KV
Sbjct: 317 IDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLNEGLVYVHRVQVTPCKV 376
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYER 123
YF GPE+++SNRV+R YPD IDNFLR+SFVDE+L K+YST LSP SS+ E+ T I++R
Sbjct: 377 YFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSPRASSSLEDGKTKIFKR 436
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
+LS LR+GI IGDKKFE LA+S+SQ+++N+ WMFA + ELTAA IR+ MGDF +I+NVAK
Sbjct: 437 ILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAKIRQWMGDFHNIRNVAK 496
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEVED-DGITYCFSDGIGKISAELAEIVAKNC 242
YAARLGQSFGSS E L V ++++IPD+EVE G+ Y FSDGIGKI+A A VAK C
Sbjct: 497 YAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDGIGKIAASFARKVAKKC 556
Query: 243 GFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFL 302
G +TPSAFQIRY G+KGV++VDPTSS KLSLR SMLKY+S T LD+L+ SKY PCFL
Sbjct: 557 GIR-HTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDTKLDVLSWSKYHPCFL 615
Query: 303 NRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLM 362
NRQLITLLSTLG++DHVFE KQ+E + +LD I +DPLKA +ALELMS GENT +LKE+++
Sbjct: 616 NRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALELMSPGENTKILKEMML 675
Query: 363 CGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCS 422
CGYKPD EPFL MML TFR S L+ELR ++RIFI NGRAMMGCLDET LE G+VFVQCS
Sbjct: 676 CGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLDETRNLEYGEVFVQCS 735
Query: 423 ASRR----REFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDC 478
A ++ R +NR +V G VVVAKNPCLHPGD+RVL AVDVPSLHHM+DC
Sbjct: 736 AHQQLHDDRVIFKRIKSNRHF---IVTGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMIDC 792
Query: 479 VVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIED 538
VVFP KG RPH NECSGSDLDGD+YFVCWD +LIPP Q PMDYTP P +VL D+T+E+
Sbjct: 793 VVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVPSQVLDHDVTMEE 852
Query: 539 VEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIP 598
V+EYFA+Y+VNDSLG+I NAH AD EP KA SN C++LAKL +IAVDF KTGV A IP
Sbjct: 853 VQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAVDFPKTGVPALIP 912
Query: 599 SGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSF--TKEVAMQSYDTD 656
+ LRV+ YPDFM+K DK YES+ V+GKL+R + I P I+SF T E+A Q YD D
Sbjct: 913 ANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNYTPEMARQDYDPD 972
Query: 657 MEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAI 716
MEV+GFE+Y+ DA +K YD RLGNLM Y+ IKTEAE++SG + + SF K + E+I
Sbjct: 973 MEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSSLSFTMKNEAESI 1032
Query: 717 IFAVKSLKKEARAWFNKKNESD-SSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFL 775
I AVKSL+KEAR WFN+K + H +VYA+ASAWY V YH +YWG + + N HFL
Sbjct: 1033 ILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWG-WSDGRKNHGHFL 1091
Query: 776 SFPWCIHDKLIEIKRGK 792
SFPWC++DKLI IK K
Sbjct: 1092 SFPWCVYDKLIRIKHRK 1108
>gi|356519367|ref|XP_003528344.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max]
Length = 1135
Score = 1025 bits (2650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/801 (62%), Positives = 621/801 (77%), Gaps = 11/801 (1%)
Query: 1 MEYIEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTP 60
+EYIE AL L ++ECCYEP +WLE+QY KY + S A++LDDGL+YV++V VTP
Sbjct: 306 LEYIESALHKLDQMKECCYEPAQWLEKQYNKYSTNSLVPLSSAISLDDGLVYVHRVQVTP 365
Query: 61 SKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTI 120
SK+YF GPE++LSNRV+R+YP++ DNFLR+SFVDED+DKL+S L P SST+ +R T +
Sbjct: 366 SKIYFCGPEVNLSNRVLRNYPEDTDNFLRVSFVDEDMDKLHSADLVPRSSSTDVDRETKL 425
Query: 121 YERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKN 180
+ERVLSTL+NGI IGDKKFE LAFS SQ++DNS+WMFASR LTA+DIR+ MG+F +I+N
Sbjct: 426 HERVLSTLKNGIAIGDKKFEFLAFSPSQLRDNSVWMFASRTGLTASDIRKWMGEFHEIRN 485
Query: 181 VAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAK 240
VAKYAARLGQSF SSRE + V +IEIIPD+E+ YCF+DGIGKIS+ELA+ VAK
Sbjct: 486 VAKYAARLGQSFSSSRETVSVGEHEIEIIPDIELRRGETKYCFTDGIGKISSELAQEVAK 545
Query: 241 NCGFTIYT-PSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQP 299
CG PSAFQIRYGGYKGVVA+DPTSSTKLSLRKSM KYKSE+T LD+LA SKY+P
Sbjct: 546 KCGCRDNNIPSAFQIRYGGYKGVVAIDPTSSTKLSLRKSMFKYKSENTKLDVLAWSKYKP 605
Query: 300 CFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKE 359
C+LNRQ+ITLLSTLG++D VF KKQRE + QL I T PL L+LM +GE TN+L+E
Sbjct: 606 CYLNRQIITLLSTLGVKDRVFRKKQREILNQLKMISTKPLMV---LDLMFTGEITNILRE 662
Query: 360 LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFV 419
+L+CG+ EPFL MMLQT AS L EL+ +TRI ++ GRA++GCLDET TL+ G+VFV
Sbjct: 663 MLICGFHQTKEPFLSMMLQTLCASKLQELQLKTRILVKKGRALLGCLDETRTLKYGEVFV 722
Query: 420 QCSASRRREF--LDNSCNNRSG---ELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHH 474
Q + R ++ + + +NR G +V+GKVVVAKNPCLHPGD+R+LRAVDVPSLHH
Sbjct: 723 QIAHQRNKQIHAMPSLSSNRYGGNKSKHIVKGKVVVAKNPCLHPGDVRILRAVDVPSLHH 782
Query: 475 MVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDM 534
MVDCVVFP KG+RPH NECSGSDLDGD+YFV WD +LIPP Q PMD+ P+ + D+
Sbjct: 783 MVDCVVFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPPHQENPMDHAPSQVMNVDHDV 842
Query: 535 TIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVA 594
T+++V+EYFA YIV D LG++ +AH V AD +P+KA S C ELAKL +IAVDF+K+GV
Sbjct: 843 TLQEVQEYFAHYIVEDRLGIVASAHTVFADKDPEKAMSPACTELAKLHSIAVDFAKSGVP 902
Query: 595 ATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYD 654
A IP LRVE YPDFMEK DK Y+S +IGKLYR V+++A K+FT+ VA QSYD
Sbjct: 903 AEIPQHLRVEEYPDFMEKPDKPSYQSNSIIGKLYREVRNVAQHKNLNKTFTRRVARQSYD 962
Query: 655 TDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLE 714
DME+DGFE Y A +YK YD +LGNLMDYYGI+TEAEI+SG I++M+KSF++++DLE
Sbjct: 963 PDMEIDGFEKYTATACEYKNMYDFKLGNLMDYYGIETEAEIISGNILKMSKSFNERKDLE 1022
Query: 715 AIIFAVKSLKKEARAWFN-KKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTH 773
I AV SL+KE R+WFN N+S+S D YA ASAWY V YHP YWG Y +G+NR H
Sbjct: 1023 GINHAVMSLRKETRSWFNVMVNKSNSQGRDAYAIASAWYLVTYHPRYWGSY-NQGLNRGH 1081
Query: 774 FLSFPWCIHDKLIEIKRGKQR 794
FLSFPWC+HD LI+IK+ K R
Sbjct: 1082 FLSFPWCVHDTLIQIKKDKVR 1102
>gi|377347180|dbj|BAL63010.1| RNA-dependent RNA polymerase 1 [Cucumis sativus]
Length = 1115
Score = 1024 bits (2648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/797 (62%), Positives = 611/797 (76%), Gaps = 13/797 (1%)
Query: 4 IEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKV 63
I+HAL+ L HL+ECCY P +WL+E+YRKY + P + L++GL+YV++V VTP KV
Sbjct: 317 IDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLNEGLVYVHRVQVTPCKV 376
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYER 123
YF GPE+++SNRV+R YPD IDNFLR+SFVDE+L K+YST LSP SS+ E+ T I +R
Sbjct: 377 YFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSPRASSSLEDGKTKILKR 436
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
+LS LR+GI IGDKKFE LA+S+SQ+++N+ WMFA + ELTAA IR+ MGDF +I+NVAK
Sbjct: 437 ILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAKIRQWMGDFHNIRNVAK 496
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEVED-DGITYCFSDGIGKISAELAEIVAKNC 242
YAARLGQ FGSS E L V ++++IPD+EVE G+ Y FSDGIGKI+A A VAK C
Sbjct: 497 YAARLGQPFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDGIGKIAASFARKVAKKC 556
Query: 243 GFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFL 302
G +TPSAFQIRY G+KGV++VDPTSS KLSLR SMLKY+S T LD+L+ SKY PCFL
Sbjct: 557 GIR-HTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDTKLDVLSWSKYHPCFL 615
Query: 303 NRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLM 362
NRQLITLLSTLG++DHVFE KQ+E + +LD I +DPLKA +ALELMS GENT +LKE+++
Sbjct: 616 NRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALELMSPGENTKILKEMML 675
Query: 363 CGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCS 422
CGYKPD EPFL MML TFR S L+ELR ++RIFI NGRAMMGCLDET LE G+VF QCS
Sbjct: 676 CGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLDETRNLEYGEVFWQCS 735
Query: 423 ASRR----REFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDC 478
A ++ R +NR +V G VVVAKNPCLHPGD+RVL AVDVPSLHHM+DC
Sbjct: 736 AHQQLHDDRVIFKRIKSNRHF---IVTGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMIDC 792
Query: 479 VVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIED 538
VVFP KG RPH NECSGSDLDGD+YFVCWD +LIPP Q PMDYTP P +VL D+T+E+
Sbjct: 793 VVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVPSQVLDHDVTMEE 852
Query: 539 VEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIP 598
V+EYFA+Y+VNDSLG+I NAH AD EP KA SN C++LAKL +IAVDF KTGV A IP
Sbjct: 853 VQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAVDFPKTGVPALIP 912
Query: 599 SGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSF--TKEVAMQSYDTD 656
+ LRV+ YPDFM+K DK YES+ V+GKL+R + I P I+SF T E+A Q YD D
Sbjct: 913 ANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNYTPEMARQDYDPD 972
Query: 657 MEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAI 716
MEV+GFE+Y+ DA +K YD RLGNLM Y+ IKTEAE++SG + + SF K + E+I
Sbjct: 973 MEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSSLSFTMKNEAESI 1032
Query: 717 IFAVKSLKKEARAWFNKKNESD-SSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFL 775
I AVKSL+KEAR WFN+K + H +VYA+ASAWY V YH +YWG + + N HFL
Sbjct: 1033 ILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWG-WSDGRKNHGHFL 1091
Query: 776 SFPWCIHDKLIEIKRGK 792
SFPWC++DKLI IK K
Sbjct: 1092 SFPWCVYDKLIRIKHRK 1108
>gi|307135834|gb|ADN33705.1| RNA-dependent RNA polymerase [Cucumis melo subsp. melo]
Length = 1137
Score = 1023 bits (2645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/795 (65%), Positives = 612/795 (76%), Gaps = 17/795 (2%)
Query: 2 EYIEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPS 61
+YIEHALE LF+L+ECCY+P +WL++QY Y +S + P V+LDDGL+YV++V +TP
Sbjct: 334 DYIEHALEKLFNLKECCYKPQKWLKDQYLSYYVSNQLPWKPNVSLDDGLVYVHRVQITPL 393
Query: 62 KVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIY 121
KVYF GPE +LSNRVVR + D+IDNFLR+SFVDE+LDKL+S L+P SS T +Y
Sbjct: 394 KVYFCGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKLHSIDLAPRSSSPENNTRTRVY 453
Query: 122 ERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNV 181
+RV+S L+NGIVIGDKKFE LAFS SQ+++NS WMFASR L+AADIRE MGDFR I+NV
Sbjct: 454 DRVVSVLKNGIVIGDKKFEFLAFSASQLRENSFWMFASRKGLSAADIREWMGDFRQIRNV 513
Query: 182 AKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKN 241
AKYAARLGQSFGSSR+ L V +IE+IPDVEVE I YCFSDGIGKIS LA+ VAK
Sbjct: 514 AKYAARLGQSFGSSRKTLCVKEHEIEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVAKK 573
Query: 242 CGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCF 301
CG T +TPSAFQIRY GYKGVVA+DPTS KLSLRKSMLKY S T LD+L SKYQPCF
Sbjct: 574 CGLTGHTPSAFQIRYAGYKGVVAIDPTSEKKLSLRKSMLKYMSLDTQLDVLLWSKYQPCF 633
Query: 302 LNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELL 361
LNRQ+I LLSTLGI D VF KKQ+E + QLD+IL DP +A E LELMS GE T++LKELL
Sbjct: 634 LNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELL 693
Query: 362 MCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQC 421
Y P+ EPFL MML TFRA+ LL+L+T++RIF+ GR MMGCLDET TLE GQVFV C
Sbjct: 694 -SFYMPNEEPFLNMMLWTFRANKLLDLKTKSRIFVPRGRTMMGCLDETRTLEYGQVFVHC 752
Query: 422 SASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVF 481
S R + G VV+GKVVVAKNPCLHPGD+R+L A+DV +LHHMVDCVVF
Sbjct: 753 SVPGR---------SSEGNF-VVKGKVVVAKNPCLHPGDVRLLDAIDVKALHHMVDCVVF 802
Query: 482 PAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEE 541
P KGKRPH NECSGSDLDGD+YFVCWD EL Q PM Y PAP L D+TIE+V++
Sbjct: 803 PQKGKRPHPNECSGSDLDGDLYFVCWDSELTCIKQVKPMSYEPAPSIQLDHDVTIEEVQK 862
Query: 542 YFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGL 601
YFA+Y+VND LG I NAH V AD KA S +C++LAKL +IAVDF KTGV A +P L
Sbjct: 863 YFANYMVNDGLGAIANAHTVFADKNSKKAMSAECIKLAKLFSIAVDFPKTGVPANLPRNL 922
Query: 602 RVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDG 661
RV YPDFM+K DK Y S V+GKL+R VKD++ T + FTKEVA + YD DMEVDG
Sbjct: 923 RVHEYPDFMDKPDKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTKEVATKCYDPDMEVDG 982
Query: 662 FEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAVK 721
FE Y+ +AF YKT+YD +LGNLMDYYGIKTE E++SG I++MAKSFDK+ DLE I FA+K
Sbjct: 983 FEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNILKMAKSFDKRNDLEQIAFAMK 1042
Query: 722 SLKKEARAWFNKKNESDSSHEDV----YAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSF 777
SL+KE R+WFN +NES ++ED+ YA+ASAWY V YHP YWGRY EG R HFLSF
Sbjct: 1043 SLRKEVRSWFN-ENESKYTYEDIEDDEYARASAWYCVTYHPDYWGRY-NEGTQRDHFLSF 1100
Query: 778 PWCIHDKLIEIKRGK 792
PWC+ DKLI+IKR K
Sbjct: 1101 PWCVADKLIQIKREK 1115
>gi|242066062|ref|XP_002454320.1| hypothetical protein SORBIDRAFT_04g028630 [Sorghum bicolor]
gi|241934151|gb|EES07296.1| hypothetical protein SORBIDRAFT_04g028630 [Sorghum bicolor]
Length = 1114
Score = 994 bits (2571), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/794 (61%), Positives = 606/794 (76%), Gaps = 19/794 (2%)
Query: 1 MEYIEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLT-SPAVALDDGLIYVNKVLVT 59
+++I+ AL + +L+ C P WL QY + SR S ++LDDGL+YV++V VT
Sbjct: 321 IDHIKRALLKMSYLKSTCLNPTNWLSVQYSRIRRSRHASQRSSNISLDDGLVYVHRVQVT 380
Query: 60 PSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTT 119
P+KVYF GPEI++SNRVVR++ +IDNFLR+SFVDED +KL S LSP +S N+ R T
Sbjct: 381 PAKVYFYGPEINVSNRVVRNFSADIDNFLRISFVDEDCEKLRSLDLSPRSTSGNDARRTA 440
Query: 120 IYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIK 179
+Y RVLS L NGI IGDK FE LAFS+SQ++DNS WMFASR LTA+DIR+ MGDFRDI+
Sbjct: 441 LYNRVLSVLSNGINIGDKHFEFLAFSSSQLRDNSAWMFASRQGLTASDIRKWMGDFRDIR 500
Query: 180 NVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVA 239
NVAKYAARLGQSF SS E L V ++E IPD++ +G Y FSDG+GKISA A+ VA
Sbjct: 501 NVAKYAARLGQSFSSSTETLIVRKHEVEQIPDIK---NGTNYIFSDGVGKISANFAKEVA 557
Query: 240 KNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQP 299
C + PS FQIRYGGYKGVVAVDP S+ KLSLR+SMLK++SE+ +LD+LA SKYQP
Sbjct: 558 MKCKLRRFAPSVFQIRYGGYKGVVAVDPRSNRKLSLRRSMLKFQSENITLDVLAYSKYQP 617
Query: 300 CFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKE 359
CFLNRQLITLLSTLG+ D+VFE KQ+E + QL+ ++T+P A EA+ELM GE TNV+KE
Sbjct: 618 CFLNRQLITLLSTLGVGDNVFELKQKEAIKQLNRMVTEPQAAREAVELMPMGEVTNVVKE 677
Query: 360 LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFV 419
LL CGY+PD EP+L M+LQTFRAS LLEL+T++RIFI GRAMMGCLDET TL+ GQVF+
Sbjct: 678 LLSCGYQPDHEPYLSMLLQTFRASKLLELKTKSRIFITQGRAMMGCLDETRTLKYGQVFI 737
Query: 420 QCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
Q S C + ++ VV GKVVVAKNPCLHPGD+RVL+AVDVPSLHHM DCV
Sbjct: 738 QASY----------CADDHHKI-VVTGKVVVAKNPCLHPGDIRVLQAVDVPSLHHMFDCV 786
Query: 480 VFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDV 539
VFP +G RPH NECSGSDLDGD+YFV WD +LIP PMDYTPAP + L D+TIE++
Sbjct: 787 VFPQQGPRPHPNECSGSDLDGDIYFVSWDPDLIPSHMEDPMDYTPAPAETLDHDVTIEEI 846
Query: 540 EEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPS 599
+EYF +YIVN+SLG+I NAHVV+AD E KA+S CLELAKL +IAVDF KTGV A IP
Sbjct: 847 QEYFTNYIVNESLGIIANAHVVYADKEDLKAKSRPCLELAKLFSIAVDFPKTGVPALIPP 906
Query: 600 GLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEV 659
L V+ YPDFMEK DK YES+ VIGKLYR +K P I+ FT+EVA +SYDTD+ V
Sbjct: 907 ELHVKEYPDFMEKLDKATYESKGVIGKLYREIKKHTP---HIRHFTREVAKRSYDTDLIV 963
Query: 660 DGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFA 719
DG+EDYIT+A ++K EYD RLGNLMD+YGIK+EAEI+SGC ++MAK+F K D +AI A
Sbjct: 964 DGYEDYITEAIEFKEEYDFRLGNLMDHYGIKSEAEIISGCFLKMAKNFTKSSDADAIRMA 1023
Query: 720 VKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPW 779
V+SL+KEAR+WFN+ + S+ + AKASAWYHV Y P YWG Y EG +R H +SFPW
Sbjct: 1024 VRSLRKEARSWFNEMSTSEDDQDATEAKASAWYHVTYDPQYWGNYN-EGYDRPHLISFPW 1082
Query: 780 CIHDKLIEIKRGKQ 793
C++DKL+ IK+ +
Sbjct: 1083 CVYDKLVIIKQRRN 1096
>gi|40794965|gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare subsp. vulgare]
Length = 1115
Score = 979 bits (2531), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/796 (60%), Positives = 604/796 (75%), Gaps = 21/796 (2%)
Query: 1 MEYIEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDD-GLIYVNKVLVT 59
++ I+ ALE + +L++ C P WL EQY+K SR LTSP + LDD GL+YV +V +T
Sbjct: 319 IDRIKRALEKMSYLKKTCLNPTNWLSEQYKKMRRSR-VLTSPNITLDDDGLVYVYRVQIT 377
Query: 60 PSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTT 119
P+KVYF GPEI++SNRVVR+Y ++DNFLR+SFVDED +KL ST LS + N R T
Sbjct: 378 PAKVYFYGPEINVSNRVVRNYAADLDNFLRISFVDEDCEKLRSTDLSQRSAPGNNTRRTA 437
Query: 120 IYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIK 179
+Y RVLS L NGI IGDK F+ LAFS+SQ++DNS WMFASRP L+A+DIRE MG+FR+I+
Sbjct: 438 LYNRVLSVLSNGITIGDKHFDFLAFSSSQLRDNSAWMFASRPGLSASDIREWMGNFRNIR 497
Query: 180 NVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVA 239
NVAKYAARLGQSF SS E L V +++ PDV +G Y FSDGIG ISA+ A+ V+
Sbjct: 498 NVAKYAARLGQSFSSSTETLKVHKYEVKEAPDVT---NGTEYVFSDGIGTISADFADEVS 554
Query: 240 KNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQP 299
K C T +TPSAFQIRYGGYKGVVA+DPTS KLSLRKSM K++S++ +LD+LA SKYQP
Sbjct: 555 KKCNLTRFTPSAFQIRYGGYKGVVAIDPTSQWKLSLRKSMSKFQSDNITLDVLAYSKYQP 614
Query: 300 CFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKE 359
CFLNRQLITLLSTLG+ D +FE KQ+E V QL+ ++ +P A +A+ELM GE TN++KE
Sbjct: 615 CFLNRQLITLLSTLGVIDSIFELKQQEAVQQLNRMVAEPQAAIDAIELMPMGEITNIVKE 674
Query: 360 LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFV 419
LL+CGY+PDVEP++ M+LQTFRAS LLEL+TR+RIF+ GRAMMGCLDET TL+ GQVF+
Sbjct: 675 LLLCGYRPDVEPYVSMLLQTFRASKLLELKTRSRIFVPKGRAMMGCLDETRTLKYGQVFI 734
Query: 420 QCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
Q S NS ++R VV GKV+VAKNPC+HPGD+R+L+AV P L HMV+CV
Sbjct: 735 QAS---------NSADDRGK--SVVTGKVIVAKNPCIHPGDIRILQAVHSPLLGHMVNCV 783
Query: 480 VFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDV 539
VFP G RPH NECSGSDLDGD+YFV WD +LIP PMDYTPAP + L D+ IE+V
Sbjct: 784 VFPQLGPRPHPNECSGSDLDGDIYFVSWDPDLIPTRMVAPMDYTPAPTETLDHDVMIEEV 843
Query: 540 EEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPS 599
EYF +YIVN+SLG+I NAHVV AD + KA S QC++LA+L +IAVD+ KTGV A IP
Sbjct: 844 HEYFTNYIVNESLGIIANAHVVFADRQSLKAESTQCIKLAELFSIAVDYPKTGVPAQIPH 903
Query: 600 GLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEV 659
L V+ YPDFMEK D+ Y S+ VIGKLYR +K P I+ FTK+VA SYDTD+ V
Sbjct: 904 ELHVKEYPDFMEKLDRATYVSEGVIGKLYREIKKQNP---HIRHFTKDVATLSYDTDLIV 960
Query: 660 DGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFA 719
DG++DYIT+A +K EYD +LGNLM++YGI +EAEI+SGCI++MAK+F KK D +AI A
Sbjct: 961 DGYQDYITEAVWFKEEYDFKLGNLMEHYGINSEAEIISGCILKMAKNFTKKSDADAIRLA 1020
Query: 720 VKSLKKEARAWFNK--KNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSF 777
VKSL+KEAR+WF++ +ES H+ + AKASAWYHV YHP YWG Y E +R H +SF
Sbjct: 1021 VKSLRKEARSWFSEMGSDESGDGHKALVAKASAWYHVTYHPQYWGCYNEGYDHRPHLISF 1080
Query: 778 PWCIHDKLIEIKRGKQ 793
PWC++DKLI IK+ K
Sbjct: 1081 PWCVYDKLILIKQKKN 1096
>gi|197223664|gb|ACH53360.1| RNA-directed RNA polymerase 1a [Hordeum vulgare]
Length = 1114
Score = 977 bits (2526), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/795 (60%), Positives = 606/795 (76%), Gaps = 21/795 (2%)
Query: 1 MEYIEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDD-GLIYVNKVLVT 59
+++I+HALE + +L++ C P+ WL E+Y++ +SR LTSP +ALDD GL YV +V +T
Sbjct: 319 IDHIKHALENMSYLKKTCLNPINWLSEKYKEIQISRHMLTSPNIALDDDGLAYVYRVQIT 378
Query: 60 PSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTT 119
P+KVYF GPEI++SNRVVR+Y +++NFLR+SFVDED +KL ST LSP + N T
Sbjct: 379 PAKVYFYGPEINVSNRVVRNYSADLENFLRISFVDEDCEKLRSTDLSPRYAPGNNASRTA 438
Query: 120 IYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIK 179
+Y R+LS L NGI IG+K FE LAFS+SQ++DNS WMFASR L+A+DIRE MG+FR+I+
Sbjct: 439 LYNRILSVLSNGITIGNKHFEFLAFSSSQLRDNSAWMFASRTGLSASDIREWMGNFRNIR 498
Query: 180 NVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVA 239
NVAKYAARLGQSF +S E L V +++ +P+V +G Y FSDGIG ISA+ A+ V+
Sbjct: 499 NVAKYAARLGQSFSASTETLKVHKYEVQALPEVT---NGTKYVFSDGIGTISADFADEVS 555
Query: 240 KNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQP 299
+ C +TPSAFQIRYGGYKGVVA+DP S KLSLR SM K+ SE+ +LD+LA SKYQP
Sbjct: 556 RKCKLARFTPSAFQIRYGGYKGVVAIDPRSHWKLSLRSSMSKFPSENITLDVLAYSKYQP 615
Query: 300 CFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKE 359
CFLNRQLITLLSTLG+RD++FE KQ+ V QL+ ++T+P A +A+ELM GE TNV+KE
Sbjct: 616 CFLNRQLITLLSTLGVRDNIFELKQQAAVMQLNRLVTEPQAAIDAIELMPMGEITNVVKE 675
Query: 360 LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFV 419
LL+CGY+PDVEP+L M+LQTFRAS LLEL+T++RIFI GRAMMGCLDET TL+ G+VF+
Sbjct: 676 LLLCGYQPDVEPYLSMILQTFRASKLLELKTKSRIFIPEGRAMMGCLDETRTLKYGEVFI 735
Query: 420 QCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
Q S NS N + VV GKVVVAKNPCLHPGD+R+L+AV P L HMV+CV
Sbjct: 736 QAS---------NSAN--ESDKFVVTGKVVVAKNPCLHPGDIRILKAVYTPVLDHMVNCV 784
Query: 480 VFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDV 539
VFP +G RPH NECSGSDLDGD+YFV WD +LIP PMDYTPAP + L D+ IE+V
Sbjct: 785 VFPQQGPRPHPNECSGSDLDGDIYFVSWDPDLIPTRMVAPMDYTPAPTETLDHDVVIEEV 844
Query: 540 EEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPS 599
EYFA+YIVN+SLG+I NAHVV AD E KA S QC++LA+L +IAVD+ KTGV A IPS
Sbjct: 845 HEYFANYIVNESLGIIANAHVVFADKESLKAESTQCIKLAELFSIAVDYPKTGVPAQIPS 904
Query: 600 GLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEV 659
L V YPDFMEK D+ Y S+ VIGKLYR +K +P I FTK+VA +SYDTD+ V
Sbjct: 905 ELHVREYPDFMEKLDRATYISKGVIGKLYREIKKQSP---HIGHFTKDVARRSYDTDLIV 961
Query: 660 DGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFA 719
DG++DYIT+A +K EYD +LGNLM++YGIK+EAEI+SGCI++MAK+F K D +AI A
Sbjct: 962 DGYQDYITEAVWFKGEYDFKLGNLMEHYGIKSEAEIISGCILKMAKNFTKSSDADAIRLA 1021
Query: 720 VKSLKKEARAWFN--KKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSF 777
VKSL+KEAR+WF+ +ES HE YAKASAWYHV YHP Y+G Y + R H +SF
Sbjct: 1022 VKSLRKEARSWFSDMSADESGDVHEASYAKASAWYHVTYHPEYYGCYNKI-YERPHLISF 1080
Query: 778 PWCIHDKLIEIKRGK 792
PWC++DKL+ IK+ K
Sbjct: 1081 PWCVYDKLLHIKQRK 1095
>gi|197223666|gb|ACH53361.1| RNA-directed RNA polymerase 1b [Hordeum vulgare]
Length = 1115
Score = 977 bits (2525), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/796 (60%), Positives = 604/796 (75%), Gaps = 21/796 (2%)
Query: 1 MEYIEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDD-GLIYVNKVLVT 59
++ I+ ALE + +L++ C P WL EQY+K SR LTSP + LDD GL+YV +V +T
Sbjct: 319 IDRIKRALEKMSYLKKTCLNPTNWLSEQYKKMRRSR-VLTSPNITLDDDGLVYVYRVQIT 377
Query: 60 PSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTT 119
P+KVYF GPEI++SNRVVR+Y ++DNFLR+SFVDED +KL ST LS + N R T
Sbjct: 378 PAKVYFYGPEINVSNRVVRNYAADLDNFLRISFVDEDCEKLRSTDLSQRSAPGNNTRRTA 437
Query: 120 IYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIK 179
+Y RVLS L NGI IGDK F+ LAFS+SQ++DNS WMFASRP L+A+DIRE MG+FR+I+
Sbjct: 438 LYNRVLSVLSNGITIGDKHFDFLAFSSSQLRDNSAWMFASRPGLSASDIREWMGNFRNIR 497
Query: 180 NVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVA 239
NVAKYAARLGQSF SS E L V +++ PDV +G Y FSDGIG ISA+ A+ V+
Sbjct: 498 NVAKYAARLGQSFSSSTETLKVHKYEVKEAPDVT---NGTEYVFSDGIGTISADFADEVS 554
Query: 240 KNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQP 299
K C T +TPSAFQIRYGGYKGVVA+DPTS KLSLRKSM K++S++ +LD+LA SKYQP
Sbjct: 555 KKCNLTRFTPSAFQIRYGGYKGVVAIDPTSQWKLSLRKSMSKFQSDNITLDVLAYSKYQP 614
Query: 300 CFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKE 359
CFLNRQLITLLSTLG+ D +FE KQ+E V QL+ ++ +P A +A+ELM GE TN++KE
Sbjct: 615 CFLNRQLITLLSTLGVIDSIFELKQQEAVQQLNRMVAEPQAAIDAIELMPMGEITNIVKE 674
Query: 360 LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFV 419
LL+CGY+PDVEP++ M+LQTFRAS LLEL+TR+RIF+ GRAMMGCLDET TL+ GQVF+
Sbjct: 675 LLLCGYRPDVEPYVSMLLQTFRASKLLELKTRSRIFVPKGRAMMGCLDETRTLKYGQVFI 734
Query: 420 QCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
Q S NS ++R VV GKV+VAKNPC+HPGD+R+L+AV P L HMV+CV
Sbjct: 735 QAS---------NSADDRGK--SVVTGKVIVAKNPCIHPGDIRILQAVHSPLLGHMVNCV 783
Query: 480 VFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDV 539
VFP G RPH NECSGSDLDGD+YFV WD +LIP PMDYTPAP + L D+ IE+V
Sbjct: 784 VFPQLGPRPHPNECSGSDLDGDIYFVSWDPDLIPTRMVAPMDYTPAPTETLDHDVMIEEV 843
Query: 540 EEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPS 599
EYF +YIVN+SLG+I NAHVV AD + KA S QC++LA+L +IAVD+ KTGV A IP
Sbjct: 844 HEYFTNYIVNESLGIIANAHVVFADRQSLKAESTQCIKLAELFSIAVDYPKTGVPAQIPH 903
Query: 600 GLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEV 659
L V+ YPDFMEK D+ Y S+ VIGKLYR +K P I+ FTK+VA SYDTD+ V
Sbjct: 904 ELHVKEYPDFMEKLDRATYVSEGVIGKLYREIKKQNP---HIRHFTKDVATLSYDTDLIV 960
Query: 660 DGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFA 719
DG++DYIT+A +K EYD +LGNLM++YGI +EAEI+SGCI++MAK+F KK D +AI A
Sbjct: 961 DGYQDYITEAVWFKEEYDFKLGNLMEHYGINSEAEIISGCILKMAKNFTKKSDADAIRLA 1020
Query: 720 VKSLKKEARAWFNK--KNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSF 777
VKSL+KEAR+WF++ +ES H+ + AKASAWYHV YHP YWG Y + +R H +SF
Sbjct: 1021 VKSLRKEARSWFSEMGSDESGDGHKALVAKASAWYHVTYHPQYWGCYNKGYDHRPHLISF 1080
Query: 778 PWCIHDKLIEIKRGKQ 793
PWC++DKLI IK+ K
Sbjct: 1081 PWCVYDKLILIKQKKN 1096
>gi|40794967|gb|AAR91037.1| RNA-directed RNA polymerase 2 [Hordeum vulgare subsp. vulgare]
Length = 1115
Score = 976 bits (2523), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/795 (60%), Positives = 605/795 (76%), Gaps = 21/795 (2%)
Query: 1 MEYIEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDD-GLIYVNKVLVT 59
+++I+HALE + +L++ C P+ WL E+Y++ +SR LTSP +ALDD GL YV +V +T
Sbjct: 319 IDHIKHALENMSYLKKTCLNPINWLSEKYKEIQISRHMLTSPNIALDDDGLAYVYRVQIT 378
Query: 60 PSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTT 119
P+KVYF GPEI++SNRVVR+Y +++NFLR+SFVDED +KL ST LSP + N T
Sbjct: 379 PAKVYFYGPEINVSNRVVRNYSADLENFLRISFVDEDCEKLRSTDLSPRSAPGNNASRTA 438
Query: 120 IYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIK 179
+Y R+LS L NGI IG+K FE LAFS+SQ++DNS WMFASR L+A+DIRE MG+FR+I+
Sbjct: 439 LYNRILSVLSNGITIGNKHFEFLAFSSSQLRDNSAWMFASRTGLSASDIREWMGNFRNIR 498
Query: 180 NVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVA 239
NVAKYAARLGQSF +S E L V +++ +P+V +G Y FSDGIG ISA+ A+ V+
Sbjct: 499 NVAKYAARLGQSFSASTETLKVHKYEVQALPEVT---NGTKYVFSDGIGTISADFADEVS 555
Query: 240 KNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQP 299
+ C +TPSAFQIRYGGYKGVVA+DP S KLSLR SM K+ SE+ +LD+LA SKYQP
Sbjct: 556 RKCKLARFTPSAFQIRYGGYKGVVAIDPRSHWKLSLRSSMSKFPSENITLDVLAYSKYQP 615
Query: 300 CFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKE 359
CFLNRQLITLLSTLG+RD++FE KQ+ V QL+ ++T+P A +A+ELM GE TNV+KE
Sbjct: 616 CFLNRQLITLLSTLGVRDNIFELKQQAAVMQLNRLVTEPQAAIDAIELMPMGEITNVVKE 675
Query: 360 LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFV 419
LL+CGY+PDVEP+L M+LQTFRAS LLEL+T++RIFI GRAMMGCLDET TL+ G+VF+
Sbjct: 676 LLLCGYQPDVEPYLSMILQTFRASKLLELKTKSRIFIPEGRAMMGCLDETRTLKYGEVFI 735
Query: 420 QCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
Q S NS N + VV GKVVVAKNPCLHPGD+R+L AV P L HMV+CV
Sbjct: 736 QAS---------NSAN--ESDKFVVTGKVVVAKNPCLHPGDIRILEAVYTPVLDHMVNCV 784
Query: 480 VFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDV 539
VFP +G RPH NECSGSDLDGD+YFV WD +LIP PMDYTPAP + L D+ IE+V
Sbjct: 785 VFPQQGPRPHPNECSGSDLDGDIYFVSWDPDLIPTRMVAPMDYTPAPTETLDHDVVIEEV 844
Query: 540 EEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPS 599
EYFA+YIVN+SLG+I NAHVV AD E KA S QC++LA+L +IAVD+ KTGV A IPS
Sbjct: 845 HEYFANYIVNESLGIIANAHVVFADKESLKAESTQCIKLAELFSIAVDYPKTGVPAQIPS 904
Query: 600 GLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEV 659
L V YPDFMEK D+ Y S+ VIGKLYR +K +P I FTK+VA +SYDTD+ V
Sbjct: 905 KLHVREYPDFMEKLDRATYISKGVIGKLYREIKKQSP---HIGHFTKDVARRSYDTDLIV 961
Query: 660 DGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFA 719
DG++DYIT+A +K EYD +LGNLM++YGIK+EAEI+SGCI++MAK+F K D +AI A
Sbjct: 962 DGYQDYITEAVWFKGEYDFKLGNLMEHYGIKSEAEIISGCILKMAKNFTKSSDADAIRLA 1021
Query: 720 VKSLKKEARAWFN--KKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSF 777
VKSL+KEAR+WF+ +ES HE YAKASAWYHV YHP Y+G Y + R H +SF
Sbjct: 1022 VKSLRKEARSWFSDMSADESGDVHEASYAKASAWYHVTYHPEYYGCYNKI-YERPHLISF 1080
Query: 778 PWCIHDKLIEIKRGK 792
PWC++DKL+ IK+ K
Sbjct: 1081 PWCVYDKLLHIKQRK 1095
>gi|413938756|gb|AFW73307.1| putative RNA-dependent RNA polymerase [Zea mays]
Length = 933
Score = 964 bits (2492), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/793 (61%), Positives = 600/793 (75%), Gaps = 19/793 (2%)
Query: 1 MEYIEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPA-VALDDGLIYVNKVLVT 59
+++I+ AL + +L+ C P WL QY + SR + ++LDDGL+YV++V VT
Sbjct: 146 IDHIKRALLKMTYLKSTCLNPTDWLSVQYSRIRKSRHASQKLSNISLDDGLVYVHRVQVT 205
Query: 60 PSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTT 119
P+KVYF GPEI++SNRVVR + +IDNFLR+SFVDED +KL S LSP +S N+ R T
Sbjct: 206 PAKVYFYGPEINVSNRVVRHFSADIDNFLRISFVDEDCEKLRSADLSPRSTSGNDARRTA 265
Query: 120 IYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIK 179
+Y RVLS L NGI IGDK FE LAFS+SQ++DNS WMFASR LTA+DIR+ MGDFRDI+
Sbjct: 266 LYNRVLSVLSNGINIGDKHFEFLAFSSSQLRDNSAWMFASRQGLTASDIRKWMGDFRDIR 325
Query: 180 NVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVA 239
NVAKYAARLGQSF SS E L V S++E IPD+ +G Y FSDG+GKISA A VA
Sbjct: 326 NVAKYAARLGQSFSSSTETLKVHKSEVERIPDIT---NGTKYIFSDGVGKISANFAVEVA 382
Query: 240 KNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQP 299
C + PS FQIRYGGYKGVVAVD S+ KLSLRKSM K++SE+ +LD+LA SKYQP
Sbjct: 383 MKCKLKRFAPSVFQIRYGGYKGVVAVDTRSNHKLSLRKSMSKFQSENITLDVLAYSKYQP 442
Query: 300 CFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKE 359
CFLNRQLITLLSTLG+ D+VFE KQ+E + QL+ ++T+P A EA+ELM GE TNV+KE
Sbjct: 443 CFLNRQLITLLSTLGVSDNVFELKQKEALRQLNRMVTEPQAAREAVELMPMGEVTNVVKE 502
Query: 360 LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFV 419
LL CGY+PD EP+L M+LQTFRAS LLEL+T++RIFI GRAMMGCLDET TL+ GQVFV
Sbjct: 503 LLSCGYQPDHEPYLSMLLQTFRASKLLELKTKSRIFITQGRAMMGCLDETCTLKYGQVFV 562
Query: 420 QCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
Q S S + ++R V GKVVVAKNPCLHPGD+RVL+AVDVP+LHH+ DCV
Sbjct: 563 QASYS--------ADDHRKVV---VTGKVVVAKNPCLHPGDIRVLQAVDVPALHHLFDCV 611
Query: 480 VFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDV 539
VFP +G RPH NECSGSDLDGD+YFV WD LIP PMDYTPA + L D+TIE++
Sbjct: 612 VFPQQGPRPHPNECSGSDLDGDIYFVSWDPHLIPSRLVDPMDYTPASAETLDHDVTIEEI 671
Query: 540 EEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPS 599
+EYF +YIVN+SLG+I NAHVV AD E KA S C++LAKL +IAVDF KTGV A IP
Sbjct: 672 QEYFTNYIVNESLGIIANAHVVFADQERMKAESPPCVQLAKLFSIAVDFPKTGVPALIPH 731
Query: 600 GLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEV 659
L V+ YPDFMEK DK YES+ VIGKLYR +K P IK FT+EVA +SYDTD+ V
Sbjct: 732 ELHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTP---HIKHFTREVARRSYDTDLIV 788
Query: 660 DGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFA 719
DG+EDYIT+A ++K EYD RLGNLMD+YGIK+EAEI+SGCI++MAK+F K D +AI A
Sbjct: 789 DGYEDYITEAIEFKEEYDFRLGNLMDHYGIKSEAEIISGCILKMAKNFTKSSDADAIRMA 848
Query: 720 VKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPW 779
V+SL+KEAR+WFN+ + + + + AKASAWYHV YH YWG Y EG +R H +SFPW
Sbjct: 849 VRSLRKEARSWFNEMSTGEDGQDAMEAKASAWYHVTYHQQYWGSYN-EGYDRPHLISFPW 907
Query: 780 CIHDKLIEIKRGK 792
C++DKL+ IK+G+
Sbjct: 908 CVYDKLVAIKQGR 920
>gi|308080205|ref|NP_001183933.1| putative RNA-dependent RNA polymerase [Zea mays]
gi|254838301|gb|ACT83377.1| putative RNA-dependent RNA polymerase [Zea mays]
Length = 1108
Score = 962 bits (2486), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/793 (61%), Positives = 598/793 (75%), Gaps = 19/793 (2%)
Query: 1 MEYIEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPA-VALDDGLIYVNKVLVT 59
+++I+ AL + +L+ C P WL QY + SR + ++LDDGL+YV++V VT
Sbjct: 321 IDHIKRALLKMTYLKSTCLNPTDWLSVQYSRIRKSRHASQKLSNISLDDGLVYVHRVQVT 380
Query: 60 PSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTT 119
P+KVYF GPEI++SNRVVR + +IDNFLR+SFVDED +KL S LSP +S N+ R T
Sbjct: 381 PAKVYFYGPEINVSNRVVRHFSADIDNFLRISFVDEDCEKLRSADLSPRSTSGNDARRTA 440
Query: 120 IYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIK 179
+Y RVLS L NGI IGDK FE LAFS+SQ++DNS WMFASR LTA+DIR+ MGDFRDI+
Sbjct: 441 LYNRVLSVLSNGINIGDKHFEFLAFSSSQLRDNSAWMFASRQGLTASDIRKWMGDFRDIR 500
Query: 180 NVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVA 239
NVAKYAA LGQSF SS E L V S++E IPD+ +G Y FSDG+GKISA A VA
Sbjct: 501 NVAKYAAILGQSFSSSTETLKVHKSEVERIPDIT---NGTKYIFSDGVGKISANFAVEVA 557
Query: 240 KNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQP 299
C + PS FQIRYGGYKGVVAVD S+ KLSLRKSM K++SE+ +LD+LA SKYQP
Sbjct: 558 MKCKLKRFAPSVFQIRYGGYKGVVAVDTRSNHKLSLRKSMSKFQSENITLDVLAYSKYQP 617
Query: 300 CFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKE 359
CFLNRQLITLLSTLG+ D+VFE KQ+E + QL+ ++T+P A EA+ELM GE TNV+KE
Sbjct: 618 CFLNRQLITLLSTLGVSDNVFELKQKEALRQLNRMVTEPQAAREAVELMPMGEVTNVVKE 677
Query: 360 LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFV 419
LL CGY+PD EP+L M+LQTFRAS LLEL+T++RIFI GRAMMGCLDET TL+ GQVFV
Sbjct: 678 LLSCGYQPDHEPYLSMLLQTFRASKLLELKTKSRIFITQGRAMMGCLDETCTLKYGQVFV 737
Query: 420 QCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
Q S S + ++R V GKVVVAKNPCLHPGD+RVL+AVDVP+LHH+ DCV
Sbjct: 738 QASYS--------ADDHRKVV---VTGKVVVAKNPCLHPGDIRVLQAVDVPALHHLFDCV 786
Query: 480 VFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDV 539
VFP +G RPH NECSGSDLDGD+YFV WD LIP PMDYTPA + L D+TIE++
Sbjct: 787 VFPQQGPRPHPNECSGSDLDGDIYFVSWDPHLIPSRLVDPMDYTPASAETLDHDVTIEEI 846
Query: 540 EEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPS 599
+EYF +YIVN+SLG+I NAHVV D E KA S C++LAKL +IAVDF KTGV A IP
Sbjct: 847 QEYFTNYIVNESLGIIANAHVVFTDQERMKAESPPCVQLAKLFSIAVDFPKTGVPALIPH 906
Query: 600 GLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEV 659
L V+ YPDFMEK DK YES+ VIGKLYR +K P IK FT+EVA +SYDTD+ V
Sbjct: 907 ELHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTP---HIKHFTREVARRSYDTDLIV 963
Query: 660 DGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFA 719
DG+EDYIT+A ++K EYD RLGNLMD+YGIK+EAEI+SGCI++MAK+F K D +AI A
Sbjct: 964 DGYEDYITEAIEFKEEYDFRLGNLMDHYGIKSEAEIISGCILKMAKNFTKSSDADAIRMA 1023
Query: 720 VKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPW 779
V+SL+KEAR+WFN+ + + + + AKASAWYHV YH YWG Y EG +R H +SFPW
Sbjct: 1024 VRSLRKEARSWFNEMSTGEDGQDAMEAKASAWYHVTYHQQYWGSYN-EGYDRPHLISFPW 1082
Query: 780 CIHDKLIEIKRGK 792
C++DKL+ IK+G+
Sbjct: 1083 CVYDKLVAIKQGR 1095
>gi|147853646|emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]
Length = 654
Score = 921 bits (2380), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/642 (70%), Positives = 512/642 (79%), Gaps = 15/642 (2%)
Query: 156 MFASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVE 215
MFASRP LTAA+IR MGDF I+NVAKYAARLGQSF SS+E L V +IE IPD+E+
Sbjct: 1 MFASRPGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIH 60
Query: 216 DDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSL 275
TY FSDGIGKIS +LA VA CG TPSAFQIRYGGYKGVVAVDPTSS KLSL
Sbjct: 61 KXRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSL 120
Query: 276 RKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAIL 335
RKSM KY+S++T+LD+LA SKYQP FLNRQLITLLSTLG++DHVFEKKQR V QLD IL
Sbjct: 121 RKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTIL 180
Query: 336 TDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIF 395
DP+ A EALELMS GENTNVLKE+LMCGYKPD EPFL MMLQTFRA+ LLELRT+TRIF
Sbjct: 181 KDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIF 240
Query: 396 IQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSG----ELGVVEGKVVVA 451
+ NGR+MMGCLDET TLE G+VFVQ S + R+ +S R + ++EGK+VVA
Sbjct: 241 VPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVA 300
Query: 452 KNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHEL 511
KNPCLHPGD+RVL AV+VP+LHHMVDCVVFP KGKRPH NECSGSDLDGD+YFVCWD +L
Sbjct: 301 KNPCLHPGDVRVLXAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDL 360
Query: 512 IPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKAR 571
IPP Q PMDYTPAP K +VEEYF +YIVNDSLG+I NAH V AD E DKA
Sbjct: 361 IPPQQINPMDYTPAPTK---------EVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAY 411
Query: 572 SNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAV 631
+ C ELAKL +IAVDF KTGV A IP LRV+ YPDFMEK DK YESQ VIGKL+R V
Sbjct: 412 CDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREV 471
Query: 632 KDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKT 691
KDIAP I+SFT++VA QSYD DMEV GFEDY++DAF YK+EYD +LGNLMDYYGIKT
Sbjct: 472 KDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKT 531
Query: 692 EAEILSGCIMEMAKSFDKKRDLEAIIFAVKSLKKEARAWFNK-KNESDSSHEDVYAKASA 750
E+EILSG IM M+KSFD+++D EAI AVKSL+KEAR WFNK +E+DS +DVYAKASA
Sbjct: 532 ESEILSGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASA 591
Query: 751 WYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIKRGK 792
WYHV YHP YWG Y EGM+R HFLSFPWC++DKLI KR K
Sbjct: 592 WYHVTYHPDYWGCY-NEGMDRDHFLSFPWCVYDKLIHTKRKK 632
>gi|251765121|sp|Q0DXS3.2|RDR1_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 1; Short=OsRDR1
Length = 740
Score = 920 bits (2378), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/735 (62%), Positives = 561/735 (76%), Gaps = 20/735 (2%)
Query: 61 SKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTI 120
S VYF GPEI++SNRVVR++ +I+NFLR+SFVDED +KL +T LSP +S ++ T +
Sbjct: 7 STVYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTAL 66
Query: 121 YERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKN 180
Y+RVLS L +GI IG K FE LAFS+SQ++DNS WMFASR L A+DIR MGDFR+I+N
Sbjct: 67 YKRVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRN 126
Query: 181 VAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAK 240
VAKYAARLGQSF SS E L V ++E I D++ +G + FSDGIGKIS+ A VA
Sbjct: 127 VAKYAARLGQSFSSSTETLKVQKYEVEEISDIK---NGTQHVFSDGIGKISSAFANEVAM 183
Query: 241 NCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPC 300
C + PSAFQIRYGGYKGVVAVDPTS KLSLRKSMLK++S++ ++D+LA SKYQP
Sbjct: 184 KCNLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPG 243
Query: 301 FLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKEL 360
FLNRQLITLLSTLG+RD VFE+KQ E V QL+ ++TDP A EA+ELM GE TN +KEL
Sbjct: 244 FLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKEL 303
Query: 361 LMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQ 420
L+CGY+PD EP+L M+LQTFRAS LLEL+T++RI I GRAMMGCLDET TL+ GQVF++
Sbjct: 304 LLCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIR 363
Query: 421 CSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVV 480
++ N+R V GKVV+AKNPCLHPGD+R+L AVDVP LHHM +CVV
Sbjct: 364 ATSGVND-------NDRF----TVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVV 412
Query: 481 FPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVE 540
FP +G RPH NECSGSDLDGD+YFV WD LIPP PMDYTPAP + L D+TIE+VE
Sbjct: 413 FPQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVE 472
Query: 541 EYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSG 600
EYF +YIVN+SLG+I NAHVV AD E KA S+ C+ELAKL +IAVDF KTGV A IP
Sbjct: 473 EYFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPE 532
Query: 601 LRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVD 660
L V+ YPDFMEK DK YES+ VIGKLYR +K P IK FT+EVA +SYDTDM VD
Sbjct: 533 LHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTP---HIKHFTREVARRSYDTDMIVD 589
Query: 661 GFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAV 720
G+EDYIT+A K EYD +LGNLMD+YGIK+EAEI+SGCI++MAK+F KK D +AI AV
Sbjct: 590 GYEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRLAV 649
Query: 721 KSLKKEARAWFNKKNESDS--SHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFP 778
+SL+KEAR+ F++ + D+ H+ AKASAWYHV YHP +WG Y EG R HF+SFP
Sbjct: 650 RSLRKEARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYN-EGYERPHFISFP 708
Query: 779 WCIHDKLIEIKRGKQ 793
WCI++KL+ IK+ ++
Sbjct: 709 WCIYEKLLRIKQRRK 723
>gi|147860348|emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]
Length = 697
Score = 904 bits (2337), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/642 (70%), Positives = 518/642 (80%), Gaps = 6/642 (0%)
Query: 156 MFASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVE 215
MFASRP LTAADIR MGDF I+NVAKYAARLGQSF SS+E L V +IEIIPD+E+
Sbjct: 1 MFASRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIEIH 60
Query: 216 DDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSL 275
DG TY FSDGIGKISAELA VA CG TPSAFQIRYGGYKGVVAVDPTSS KLSL
Sbjct: 61 RDGTTYVFSDGIGKISAELAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSL 120
Query: 276 RKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAIL 335
RKSM KY+SE+T+LD+L+ SKY+PCFLNRQLITLLSTLG++DHVFEKKQRE V QLD IL
Sbjct: 121 RKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTIL 180
Query: 336 TDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIF 395
DPL+A EALELMS GENTN+LKE+LMCGYKPD EPFL MMLQTFRA+ LLELRT+TRIF
Sbjct: 181 KDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIF 240
Query: 396 IQNGRAMMGCLDETGTLESGQVFVQCSASR-RREFLDNSCNNRSGELG---VVEGKVVVA 451
+ NGR+MMGCLDET TLE G+VFVQ S + R+ F D+ SG ++EGKVVVA
Sbjct: 241 VPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVA 300
Query: 452 KNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHEL 511
KNPCLHPGD+R+L AVDVP+LHHMVDCVVFP KG RPH +ECSGSDLDGD+YFVCWDH+L
Sbjct: 301 KNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDL 360
Query: 512 IPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKAR 571
IPP Q PMDYTPAP KVL D+ IE+VEEYF +YI ND LG+I NAH V AD E DKA
Sbjct: 361 IPPRQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKAL 420
Query: 572 SNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAV 631
C ELAKL +IA++F KTGV A IP L V+ YPDFMEK +K YESQ VIGKL+R V
Sbjct: 421 CPPCKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREV 480
Query: 632 KDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKT 691
KD+AP I+SFT++VAMQSYD DMEVDGFEDY+ DAF YK++YD +LG+LMD YGI+T
Sbjct: 481 KDVAPHNYDIRSFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCYGIRT 540
Query: 692 EAEILSGCIMEMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESD-SSHEDVYAKASA 750
E+EILSG +M+M+KSFDK++D EAI AV+SL+KEAR WFNK + +DVYA ASA
Sbjct: 541 ESEILSGSLMKMSKSFDKRKDAEAIALAVRSLRKEARTWFNKMGSGTYAGADDVYAIASA 600
Query: 751 WYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIKRGK 792
WYHV YHP YWG Y EGM HFLSFPWC++DKLI+IKR K
Sbjct: 601 WYHVTYHPYYWGCY-NEGMYHDHFLSFPWCVYDKLIQIKRDK 641
>gi|125541045|gb|EAY87440.1| hypothetical protein OsI_08849 [Oryza sativa Indica Group]
Length = 1067
Score = 882 bits (2279), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/795 (56%), Positives = 563/795 (70%), Gaps = 66/795 (8%)
Query: 1 MEYIEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTP 60
+++I+ ALE + +L++ C P WL EQY K+ SR SP ++LDDGL+YV +V VTP
Sbjct: 320 IDHIKRALEMMSYLKKTCLNPTSWLSEQYSKFRRSRYVQPSPNISLDDGLVYVYRVQVTP 379
Query: 61 SKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTI 120
+KVYF GPEI++SNRVVR++ +I+NFLR+SFVDED +KL +T LSP +S ++ T +
Sbjct: 380 AKVYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTAL 439
Query: 121 YERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKN 180
Y+RVL L +GI IG K FE LAFS+SQ++DNS WMFASR L A+DIR MGDFR+I+N
Sbjct: 440 YKRVLLVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRN 499
Query: 181 VAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAK 240
VAKYAARLGQSF SS E L V ++E I D++ +G + FSDGIGKIS+ A VA
Sbjct: 500 VAKYAARLGQSFSSSTETLKVQKYEVEEISDIK---NGTQHVFSDGIGKISSAFANEVAM 556
Query: 241 NCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPC 300
C + PSAFQIRYGGYKGVVAVDPTS KLSLRKSMLK++S++ ++D+LA SKYQP
Sbjct: 557 KCNLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPG 616
Query: 301 FLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKEL 360
FLNRQLITLLSTLG+RD VFE+KQ E V QL+ ++TDP A EA+ELM GE TN +KEL
Sbjct: 617 FLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKEL 676
Query: 361 LMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQ 420
L+CGY+PD EP+L M+LQTFRAS LLEL+T++RI I GRAMMGCLDET TL+ GQVF++
Sbjct: 677 LLCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIR 736
Query: 421 CSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVV 480
++ V N HP
Sbjct: 737 ATSG-------------------------VNDNDRPHP---------------------- 749
Query: 481 FPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVE 540
NECSGSDLDGD+YFV WD LIPP PMDYTPAP + L D+TIE+VE
Sbjct: 750 ----------NECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVE 799
Query: 541 EYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSG 600
EYF +YIVN+SLG+I NAHVV AD E KA S+ C+ELAKL +IAVDF KTGV A IP
Sbjct: 800 EYFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPE 859
Query: 601 LRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVD 660
L V+ YPDFMEK DK YES+ VIGKLYR +K P IK FT+EVA +SYDTDM VD
Sbjct: 860 LHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTP---HIKHFTREVARRSYDTDMIVD 916
Query: 661 GFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAV 720
G+EDYIT+A K EYD +LGNLMD+YGIK+EAEI+SGCI++MAK+F KK D +AI AV
Sbjct: 917 GYEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRLAV 976
Query: 721 KSLKKEARAWFNKKNESDS--SHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFP 778
+SL+KEAR+ F++ + D+ H+ AKASAWYHV YHP +WG Y EG R HF+SFP
Sbjct: 977 RSLRKEARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYN-EGYERPHFISFP 1035
Query: 779 WCIHDKLIEIKRGKQ 793
WCI++KL+ IK+ ++
Sbjct: 1036 WCIYEKLLRIKQRRK 1050
>gi|222623633|gb|EEE57765.1| hypothetical protein OsJ_08301 [Oryza sativa Japonica Group]
Length = 1027
Score = 825 bits (2131), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/764 (56%), Positives = 536/764 (70%), Gaps = 74/764 (9%)
Query: 39 LTSPA-VALD------DGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLS 91
L SPA V +D + + Y+ K + P+ +YF GPEI++SNRVVR++ +I+NFLR+S
Sbjct: 312 LVSPAFVPIDHIKRALEMMSYLKKTCLNPT-MYFYGPEINVSNRVVRNFSSDIENFLRIS 370
Query: 92 FVDEDLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKD 151
FVDED +KL +T LSP +S ++ T +Y+RVLS L +GI IG K FE LAFS+SQ++D
Sbjct: 371 FVDEDCEKLRATDLSPRSASGHDANRTALYKRVLSVLSDGITIGGKNFEFLAFSSSQLRD 430
Query: 152 NSMWMFASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPD 211
NS WMFASR L A+DIR MGDFR+I+NVAKYAARLGQSF SS E L V ++E I D
Sbjct: 431 NSAWMFASRQGLAASDIRTWMGDFRNIRNVAKYAARLGQSFSSSTETLKVQKYEVEEISD 490
Query: 212 VEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSST 271
++ +G + FSDGIGKIS+ A VA C + PSAFQIRYGGYKGVVAVDPTS
Sbjct: 491 IK---NGTQHVFSDGIGKISSAFANEVAMKCNLKRFAPSAFQIRYGGYKGVVAVDPTSRW 547
Query: 272 KLSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQL 331
KLSLRKSMLK++S++ ++D+LA SKYQP FLNRQLITLLSTLG+RD VFE+KQ E V QL
Sbjct: 548 KLSLRKSMLKFQSDNITVDVLAYSKYQPGFLNRQLITLLSTLGVRDSVFEQKQEEAVNQL 607
Query: 332 DAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTR 391
+ ++TDP A EA+ELM GE TN +KELL+CGY+PD EP+L M+LQTFRAS LLEL+T+
Sbjct: 608 NKMVTDPQAAIEAIELMPMGEITNAVKELLLCGYQPDDEPYLSMLLQTFRASKLLELKTK 667
Query: 392 TRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVA 451
+RI I GRAMMGCLDET TL+ GQVF++ ++ V
Sbjct: 668 SRILIPKGRAMMGCLDETRTLKYGQVFIRATSG-------------------------VN 702
Query: 452 KNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHEL 511
N HP NECSGSDLDGD+YFV WD L
Sbjct: 703 DNDRPHP--------------------------------NECSGSDLDGDIYFVSWDPSL 730
Query: 512 IPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKAR 571
IPP PMDYTPAP + L D+TIE+VEEYF +YIVN+SLG+I NAHVV AD E KA
Sbjct: 731 IPPRMVTPMDYTPAPTETLDHDVTIEEVEEYFTNYIVNESLGMIANAHVVFADKEDLKAE 790
Query: 572 SNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAV 631
S+ C+ELAKL +IAVDF KTGV A IP L V+ YPDFMEK DK YES+ VIGKLYR +
Sbjct: 791 SSPCIELAKLFSIAVDFPKTGVPALIPPELHVKEYPDFMEKLDKVTYESKGVIGKLYREI 850
Query: 632 KDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKT 691
K P IK FT+EVA +SYDTDM VDG+EDYIT+A K EYD +LGNLMD+YGIK+
Sbjct: 851 KKHTP---HIKHFTREVARRSYDTDMIVDGYEDYITEAMALKDEYDFKLGNLMDHYGIKS 907
Query: 692 EAEILSGCIMEMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESDS--SHEDVYAKAS 749
EAEI+SGCI++MAK+F KK D +AI AV+SL+KEAR+ F++ + D+ H+ AKAS
Sbjct: 908 EAEIISGCILKMAKNFTKKSDADAIRLAVRSLRKEARSRFSEMSLDDNGHGHDASEAKAS 967
Query: 750 AWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIKRGKQ 793
AWYHV YHP +WG Y EG R HF+SFPWCI++KL+ IK+ ++
Sbjct: 968 AWYHVTYHPEFWGCYN-EGYERPHFISFPWCIYEKLLRIKQRRK 1010
>gi|142942403|gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 935
Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/579 (68%), Positives = 459/579 (79%), Gaps = 8/579 (1%)
Query: 4 IEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKV 63
IE ALE L++L+ECCY+PVRWL EQY Y R+ SP++ LDDGL+YV +VLVTP KV
Sbjct: 308 IEQALEKLYYLKECCYDPVRWLTEQYDGYFKGRQPPKSPSITLDDGLVYVRRVLVTPCKV 367
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYER 123
YF GPE+++SNRV+R+Y ++IDNFLR+SFVDE+ +KLYST L P S+ N R T IYER
Sbjct: 368 YFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIR-TNIYER 426
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
+LSTLR G VIGDKKFE LAFS+SQ++DNS+WMFASR LTA DIR MGDF IKNVAK
Sbjct: 427 ILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTANDIRSWMGDFSQIKNVAK 486
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCG 243
YAAR GQSFGSSRE L V +IE+IPDV+V G +Y FSDGIGKISA+ A VA NCG
Sbjct: 487 YAARFGQSFGSSRETLSVLRHEIEVIPDVKVH--GTSYVFSDGIGKISADFARKVASNCG 544
Query: 244 FTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLN 303
YTPSAFQIRYGGYKGVVAVDP SS KLSLRKSM KY+S++ LD+L SKYQPC+LN
Sbjct: 545 LQ-YTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCYLN 603
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMC 363
RQL+TLLSTLG++D V E+KQ+E V QLDAIL D LKA EALELMS GENTN+LK +L C
Sbjct: 604 RQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNC 663
Query: 364 GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA 423
GY PD EPFL MMLQTFRAS LL+LRT++RIFI NGRAMMGCLDE+ TLE GQVFVQ +
Sbjct: 664 GYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTG 723
Query: 424 SRRREF---LDNSCNNRSGELG-VVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
+ REF L N+RS +++G VVVAKNPCLHPGD+RVLRAVDVP+LHHMVDCV
Sbjct: 724 AGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCV 783
Query: 480 VFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDV 539
VFP KGKRPH NECSGSDLDGD+YFVCWD ++IPP Q M++ P P L D+TIE+V
Sbjct: 784 VFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEFPPPPSIQLDHDVTIEEV 843
Query: 540 EEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLEL 578
EEYF +YIVND LG+I NAHVV AD EPD A SN L
Sbjct: 844 EEYFTNYIVNDGLGIIANAHVVFADREPDMAMSNHAKNL 882
>gi|142942513|gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 841
Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/538 (69%), Positives = 433/538 (80%), Gaps = 8/538 (1%)
Query: 4 IEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKV 63
IE ALE L++L+ECCY+PVRWL EQY Y+ R+ SP++ LDDGL+YV +VLVTP KV
Sbjct: 308 IEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKV 367
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYER 123
YF GPE+++SNRV+R+Y ++IDNFLR+SFVDE+ +KLYST L P S+ N R T IYER
Sbjct: 368 YFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIR-TNIYER 426
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
+LSTLR G VIGDKKFE LAFS+SQ++DNS+WMFASRP LTA DIR MGDF IKNVAK
Sbjct: 427 ILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAK 486
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCG 243
YAARLGQSFGSS+E L V +IE+IPDV+V G +Y FSDGIGKISA+ A VA CG
Sbjct: 487 YAARLGQSFGSSKETLSVLRHEIEVIPDVKVH--GTSYVFSDGIGKISADFARRVASKCG 544
Query: 244 FTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLN 303
YTPSAFQIRYGGYKGVVAVDP SS KLSLRKSM KY+S++ LD+L SKYQPC+LN
Sbjct: 545 LQ-YTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLN 603
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMC 363
RQL+TLLSTLG++D V E+KQ+E V QLDAIL D LKA EALELMS GENTN+LK +L C
Sbjct: 604 RQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNC 663
Query: 364 GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA 423
GY PD EPFL MMLQTFRAS LL+LRTR+RIFI NGRAMMGCLDE+ TLE GQVFVQ +
Sbjct: 664 GYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTG 723
Query: 424 SRRREF---LDNSCNNRSGELG-VVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
+ REF L N+RS +++G VVVAKNPCLHPGD+RVLRAVDVP+LHHMVDCV
Sbjct: 724 AGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCV 783
Query: 480 VFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIE 537
VFP KGKRPH NECSGSDLDGD+YFVCWD ++IPP Q PM+Y PAP L D+TIE
Sbjct: 784 VFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIE 841
>gi|113205325|gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 1180
Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/538 (69%), Positives = 433/538 (80%), Gaps = 8/538 (1%)
Query: 4 IEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKV 63
IE ALE L++L+ECCY+PVRWL EQY Y+ R+ SP++ LDDGL+YV +VLVTP KV
Sbjct: 274 IEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKV 333
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYER 123
YF GPE+++SNRV+R+Y ++IDNFLR+SFVDE+ +KLYST L P S+ N R T IYER
Sbjct: 334 YFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIR-TNIYER 392
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
+LSTLR G VIGDKKFE LAFS+SQ++DNS+WMFASRP LTA DIR MGDF IKNVAK
Sbjct: 393 ILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAK 452
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCG 243
YAARLGQSFGSS+E L V +IE+IPDV+V G +Y FSDGIGKISA+ A VA CG
Sbjct: 453 YAARLGQSFGSSKETLSVLRHEIEVIPDVKVH--GTSYVFSDGIGKISADFARRVASKCG 510
Query: 244 FTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLN 303
YTPSAFQIRYGGYKGVVAVDP SS KLSLRKSM KY+S++ LD+L SKYQPC+LN
Sbjct: 511 LQ-YTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLN 569
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMC 363
RQL+TLLSTLG++D V E+KQ+E V QLDAIL D LKA EALELMS GENTN+LK +L C
Sbjct: 570 RQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNC 629
Query: 364 GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA 423
GY PD EPFL MMLQTFRAS LL+LRTR+RIFI NGRAMMGCLDE+ TLE GQVFVQ +
Sbjct: 630 GYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTG 689
Query: 424 SRRREF---LDNSCNNRSGELG-VVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
+ REF L N+RS +++G VVVAKNPCLHPGD+RVLRAVDVP+LHHMVDCV
Sbjct: 690 AGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCV 749
Query: 480 VFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIE 537
VFP KGKRPH NECSGSDLDGD+YFVCWD ++IPP Q PM+Y PAP L D+TIE
Sbjct: 750 VFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIE 807
Score = 350 bits (898), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 165/257 (64%), Positives = 208/257 (80%), Gaps = 5/257 (1%)
Query: 536 IEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAA 595
+++VEEYF +YIVNDSLG+I NAHVV AD EPD A S+ C +LA+L +IAVDF KTGV A
Sbjct: 906 LQEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPA 965
Query: 596 TIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDT 655
IPS LR + YPDFM+K DKT Y S+RVIGKL+R VKD AP ++I FT++VA +SYD
Sbjct: 966 EIPSQLRPKEYPDFMDKPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDVARRSYDA 1025
Query: 656 DMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEA 715
D+EVDGFEDYI +AF YKTEYDN+LGNLMDYYGIKTEAEILSG IM+ +K+FD+++D EA
Sbjct: 1026 DLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDAEA 1085
Query: 716 IIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFL 775
I AV++L+KEAR WF ++N+ D D+ KASAWYHV YHP+YWG Y +G+ R HF+
Sbjct: 1086 ISVAVRALRKEARTWFKRRNDID----DMLPKASAWYHVTYHPTYWGCY-NQGLKRDHFI 1140
Query: 776 SFPWCIHDKLIEIKRGK 792
SFPWC++D+LI+IK+ K
Sbjct: 1141 SFPWCVYDQLIQIKKEK 1157
>gi|168044164|ref|XP_001774552.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
gi|162674107|gb|EDQ60620.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
Length = 843
Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/803 (49%), Positives = 536/803 (66%), Gaps = 37/803 (4%)
Query: 18 CYEPVRWLEEQYRKYVLSRRFLTSP---AVALDDGLIYVNKVLVTPSKVYFSGPEISLSN 74
C++PV+ ++E+ + L+SP ++ L G+ +V +VLVTP+KVY +GPE+ SN
Sbjct: 50 CWDPVKEIQEELGNM---KETLSSPRSVSIKLASGMTWVRRVLVTPTKVYCTGPEVDTSN 106
Query: 75 RVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS-PLISSTNE---ERHTTIYERVLSTLRN 130
RV R + D F+R+SFVDE+L+ L S LS P + + +Y RVL TL+
Sbjct: 107 RVTRQFASHSDRFMRMSFVDENLEPLSSVALSVPRRGGAQDGVDAERSLLYNRVLKTLKE 166
Query: 131 GIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAARLGQ 190
GIVIGD KFE LAFS+SQ++++S+WMFAS +LTA IR MGDF I+NVAK AAR+GQ
Sbjct: 167 GIVIGDHKFEFLAFSSSQLREHSVWMFASYAQLTATMIRAWMGDFLTIRNVAKCAARMGQ 226
Query: 191 SFGSSREALHVDSSDIEIIPDVEVEDD-GIT-YCFSDGIGKISAELAEIVAKNCGFTIYT 248
F SS+ L V ++E IPD+E ED+ G++ YCFSDGIGKIS E A+ VAK +
Sbjct: 227 CFSSSKPTLEVPEQEVEQIPDIEREDEFGMSKYCFSDGIGKISKEFAKEVAKRLQMEV-V 285
Query: 249 PSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLIT 308
PSAFQIRYGGYKGVVAVDP S K+SLR SM K+ S+ LDILA+S++ P +LNRQ+I
Sbjct: 286 PSAFQIRYGGYKGVVAVDPHSDFKISLRPSMRKFASKHVGLDILASSRFLPSYLNRQIIL 345
Query: 309 LLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPD 368
LLSTLGI D VFE+ Q V++L+ +L D A + L++ +GE L ++L GY+P
Sbjct: 346 LLSTLGIEDSVFEQMQHRMVSELNDMLKDGDVARDMLQINHAGEMHTRLIDMLAAGYQPQ 405
Query: 369 VEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSAS--RR 426
EPF+ M+L+ FRAS L++LR R+RI GR +MGCLDET +L G++F+Q + + RR
Sbjct: 406 TEPFVKMLLEAFRASQLVDLRKRSRILEPKGRVLMGCLDETKSLSYGEIFLQVTPALGRR 465
Query: 427 REFLDNSCNNRSGELG---------VVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVD 477
+ D S +G VV G V+VAKNPCLHPGD+R L+AVD P L HMVD
Sbjct: 466 KGLRDGLETFDSYPIGSAANQNIAYVVTGWVIVAKNPCLHPGDIRKLKAVDGPGLRHMVD 525
Query: 478 CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIE 537
C+VFP KG RPH NECSGSDLDGD+YFV WD +LIP PMDYT L +TIE
Sbjct: 526 CLVFPQKGHRPHPNECSGSDLDGDLYFVSWDEDLIPLNTDEPMDYTSPGAMTLDHHVTIE 585
Query: 538 DVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATI 597
+++E+F Y+V DSLGVI NAHVV+AD+EP ARS C ELAKL ++AVDF KTGV A I
Sbjct: 586 EIQEFFVKYMVTDSLGVISNAHVVNADIEPAMARSTACQELAKLVSLAVDFPKTGVPAII 645
Query: 598 PSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQ----SY 653
P LR YPDFMEK DK Y+S+RV+GKL+R VKD A+++ E+ + ++
Sbjct: 646 PQNLRPTKYPDFMEKGDKETYKSERVLGKLFRQVKD-----ASLEKLPCEIPREDIERAF 700
Query: 654 DTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRD- 712
D M + G+E++I A +K EYD +L LM+ YGI+TEAE +SG ++ +A+ + K+R+
Sbjct: 701 DPVMVITGYEEFIDMAKFHKNEYDRKLIGLMNQYGIETEAEAVSGYMLNLARQYVKRRED 760
Query: 713 -LEAIIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNR 771
+E I AV+SL EAR F+ +N D +D+YAKASAWYHV YHP + + G
Sbjct: 761 VVERIRDAVRSLINEARQRFD-ENADDMVDDDIYAKASAWYHVTYHPEHI-KVSATGRRE 818
Query: 772 THFLSFPWCIHDKLIEIKRGKQR 794
H +SFPW I++ L++IK+ R
Sbjct: 819 VHLISFPWVIYNVLLQIKKAGGR 841
>gi|4375829|emb|CAA09894.1| RNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 513
Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/524 (69%), Positives = 414/524 (79%), Gaps = 11/524 (2%)
Query: 168 IRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGI 227
IR MGDF I+NVAKYAARLGQSF SSRE L+V S +IE+IPDVE+ G Y FSDGI
Sbjct: 1 IRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDGI 60
Query: 228 GKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSEST 287
GKISAE A VA+ CG T ++PSAFQIRYGGYKGVVAVDP SS KLSLRKSM K++SE+T
Sbjct: 61 GKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESENT 120
Query: 288 SLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALEL 347
LD+LA SKYQPC++NRQLITLLSTLG+ D VFEKKQRE V +LDAILT PL+AHEAL L
Sbjct: 121 KLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEALGL 180
Query: 348 MSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLD 407
M+ GENTN+LK L++CGYKPD EPFL MMLQ FRAS LLELRT+TRIFI GR+MMGCLD
Sbjct: 181 MAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLD 240
Query: 408 ETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAV 467
ET TLE GQV VQ S R G ++ G VVVAKNPCLH GD+RVL+AV
Sbjct: 241 ETRTLEYGQVVVQYSDPM-----------RPGRRFIITGPVVVAKNPCLHSGDVRVLQAV 289
Query: 468 DVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPE 527
+VP+L+HMVDCVVFP KG RPH NECSGSDLDGD+YFVCWD EL+PP PMDYTP P
Sbjct: 290 NVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPT 349
Query: 528 KVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVD 587
++L D+TIE+VEEYFA+YIVNDSLG+I NAH AD EP KA S+ C+ELAK + AVD
Sbjct: 350 QILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVD 409
Query: 588 FSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKE 647
F KTGVAA IP L V+ YPDFMEK DK YES+ VIGKL+R VK+ APP +IKSFT +
Sbjct: 410 FPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLD 469
Query: 648 VAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKT 691
VA +SYD DMEVDGFE+Y+ +AF K YD +LGNLMDYYGIKT
Sbjct: 470 VASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKT 513
>gi|326522592|dbj|BAK07758.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 597
Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/594 (61%), Positives = 450/594 (75%), Gaps = 20/594 (3%)
Query: 201 VDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYK 260
V +++ +P+V +G Y FSDGIG ISA+ A+ V++ C +TPSAFQIRYGGYK
Sbjct: 2 VHKYEVQALPEVT---NGTKYVFSDGIGTISADFADEVSRKCKLARFTPSAFQIRYGGYK 58
Query: 261 GVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVF 320
GVVA+DP S KLSLR SM K+ SE+ +LD+LA SKYQPCFLNRQLITLLSTLG+RD++F
Sbjct: 59 GVVAIDPRSHWKLSLRSSMSKFPSENITLDVLAYSKYQPCFLNRQLITLLSTLGVRDNIF 118
Query: 321 EKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTF 380
E KQ+ V QL+ ++T+P A +A+ELM GE TNV+KELL+CGY+PDVEP+L M+LQTF
Sbjct: 119 ELKQQAAVMQLNRLVTEPQAAIDAIELMPMGEITNVVKELLLCGYQPDVEPYLSMILQTF 178
Query: 381 RASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGE 440
RAS LLEL+T++RIFI GRAMMGCLDET TL+ G+VF+Q S NS N +
Sbjct: 179 RASKLLELKTKSRIFIPEGRAMMGCLDETRTLKYGEVFIQAS---------NSANE--SD 227
Query: 441 LGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDG 500
VV GKVVVAKNPCLHPGD+R+L+AV P L HMV+CVVFP +G RPH NECSGSDLDG
Sbjct: 228 KFVVTGKVVVAKNPCLHPGDIRILKAVYTPVLDHMVNCVVFPQQGPRPHPNECSGSDLDG 287
Query: 501 DVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHV 560
D+YFV WD +LIP PMDYTPAP + L D+ IE+V EYFA+YIVN+SLG+I NAHV
Sbjct: 288 DIYFVSWDPDLIPTRMVAPMDYTPAPTETLDHDVVIEEVHEYFANYIVNESLGIIANAHV 347
Query: 561 VHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYES 620
V AD E KA S QC++LA+L +IAVD+ KTGV A IPS L V YPDFMEK D+ Y S
Sbjct: 348 VFADKESLKAESTQCIKLAELFSIAVDYPKTGVPAQIPSELHVREYPDFMEKLDRATYIS 407
Query: 621 QRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRL 680
+ VIGKLYR +K +P I FTK+VA +SYDTD+ VDG++DYIT+A +K EYD +L
Sbjct: 408 KGVIGKLYREIKKQSP---HIGHFTKDVARRSYDTDLIVDGYQDYITEAVWFKGEYDFKL 464
Query: 681 GNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAVKSLKKEARAWFN--KKNESD 738
GNLM++YGIK+EAEI+SGCI++MAK+F K D +AI AVKSL+KEAR+WF+ +ES
Sbjct: 465 GNLMEHYGIKSEAEIISGCILKMAKNFTKSSDADAIRLAVKSLRKEARSWFSDMSADESG 524
Query: 739 SSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIKRGK 792
HE YAKASAWYHV YHP Y+G Y + R H +SFPWC++DKL+ IK+ K
Sbjct: 525 DVHEASYAKASAWYHVTYHPEYYGCYNKI-YERPHLISFPWCVYDKLLHIKQRK 577
>gi|302786286|ref|XP_002974914.1| hypothetical protein SELMODRAFT_150191 [Selaginella moellendorffii]
gi|300157073|gb|EFJ23699.1| hypothetical protein SELMODRAFT_150191 [Selaginella moellendorffii]
Length = 834
Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/791 (47%), Positives = 506/791 (63%), Gaps = 37/791 (4%)
Query: 7 ALETLFHLRECCYEPVRWLEEQYRKYVLS---RRFLTSPAVALDDGLIYVNKVLVTPSKV 63
AL L + C P Q R Y+ + RR AVA D+ IYV ++LVTP KV
Sbjct: 68 ALSNLERCEKTCLNPA----SQIRNYMRTSNRRRERYLGAVAADESQIYVKRLLVTPLKV 123
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYER 123
YF GPE+ SNRV R + ++DNFLR++FVDED D L S VLS S+ T +Y R
Sbjct: 124 YFLGPELEESNRVTRHFSHKLDNFLRVTFVDEDFDSLNSYVLS----SSRGRTKTEVYYR 179
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
+L+ LR GI + K F+ LAFS SQ+++NS+WMFA E+T IR+ MGDF I+NVAK
Sbjct: 180 LLAILRLGIKLCGKDFQFLAFSASQLRENSLWMFADDDEVTGEYIRQWMGDFLSIRNVAK 239
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEV-EDDGITYCFSDGIGKISAELAEIVAKNC 242
AAR+GQSF +S L V ++ + DVE DG YCFSDGIG IS E A VA+ C
Sbjct: 240 CAARMGQSFSTSTRTLDVPRGEVRQLSDVETFTMDGHKYCFSDGIGTISREFATRVARRC 299
Query: 243 GFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFL 302
+ PSAFQIRYGGYKGVVAVDP S KLSLR SM K+ SE T+LD+L ++Y P +L
Sbjct: 300 RAST-VPSAFQIRYGGYKGVVAVDPASCFKLSLRPSMSKFPSEQTTLDVLEKTRYIPSYL 358
Query: 303 NRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLM 362
NR++I+LLSTL + D VFE+ Q V LD +L D ++ L ++ +GE +L +++
Sbjct: 359 NREIISLLSTLEVPDGVFERMQAHQVELLDRMLLDSAATYDVLRVLYAGECHKLLVSMVL 418
Query: 363 CGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCS 422
G+ P EP++ +LQ FRA+ LL L ++RIF+ GR +MGCLDE L GQ FVQ S
Sbjct: 419 AGFSPVTEPYMRSLLQAFRAAQLLSLEKKSRIFVPKGRLLMGCLDEQRVLRYGQCFVQVS 478
Query: 423 ASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFP 482
L + N++ VV G VVVAKNPCLHPGD+ VL AVDVP LHHMVDC+VFP
Sbjct: 479 P------LQVTARNQAF---VVTGSVVVAKNPCLHPGDVLVLEAVDVPELHHMVDCIVFP 529
Query: 483 AKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEY 542
+G RPH NECSGSDLDGD YFV WD LIPP + PPM+Y P L + +E+++E+
Sbjct: 530 QQGPRPHPNECSGSDLDGDQYFVSWDSALIPPKRHPPMNYEAPPAVELDHSVRLEEIQEF 589
Query: 543 FADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLR 602
F ++I +DSLGVI +AH+ +D +AR +C+ELA+L ++AVDF KTGV A +P LR
Sbjct: 590 FVNWITSDSLGVIAHAHLALSDWSDLQARDPKCMELARLYSVAVDFPKTGVPAVMPPELR 649
Query: 603 VEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGF 662
E YPDFMEK++K Y S RVIGKLYR++++ T T ++ Q YD + V G+
Sbjct: 650 PEQYPDFMEKRNKRTYISTRVIGKLYRSIRESHRDTNTSPLVSERSFDQQYDRALVVQGY 709
Query: 663 EDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEA---IIFA 719
+ ++ +A +K YD++L +++++Y + +EAEI+SG + +A+ + ++R +A ++ A
Sbjct: 710 QSHLEEAKFFKECYDSKLTSILNHYKV-SEAEIMSGSVRSLAR-YSRRRQGDAMARVVLA 767
Query: 720 VKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPW 779
K+L KEAR WF+ E + + AKA AWYHV YHP E ++ LSFPW
Sbjct: 768 AKALVKEARGWFDDGGE--ITENEACAKAFAWYHVTYHP--------EARKKSDLLSFPW 817
Query: 780 CIHDKLIEIKR 790
+ DKL+ IK+
Sbjct: 818 VVSDKLVAIKK 828
>gi|224133496|ref|XP_002321582.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222868578|gb|EEF05709.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1110
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/800 (45%), Positives = 523/800 (65%), Gaps = 30/800 (3%)
Query: 8 LETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVAL-DDGLIYVNKVLVTPSKVYFS 66
L+ L L+ CY+P+ ++++ R+ L+SP +L ++ ++ ++ L+TPSK++
Sbjct: 328 LQKLHKLKMTCYDPLSFVKQSLRES------LSSPPKSLTENNIMSCHRALITPSKIFCL 381
Query: 67 GPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST--NEERHTTIYERV 124
GPE SN VV+ + +F+R++FV+ED KL + +S I + T IY R+
Sbjct: 382 GPEYETSNYVVKHFAQYASDFIRVTFVEEDWSKLPANAISTSIQRGIFAKPFRTGIYHRI 441
Query: 125 LSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKY 184
LS LR+G VIG K+FE LAFS SQ++ NS+WMFAS + A DIR+ MG F I++V+K
Sbjct: 442 LSILRDGFVIGAKRFEFLAFSASQLRSNSVWMFASNNGVKAEDIRKWMGCFDKIRSVSKC 501
Query: 185 AARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGF 244
AAR+GQ F SS + V D+EIIPD+EV DGI YCFSDGIGKIS A+ VA CG
Sbjct: 502 AARMGQLFSSSLQTFVVPVQDVEIIPDIEVTTDGIDYCFSDGIGKISLSFAKQVAHKCGL 561
Query: 245 TIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLNR 304
+ +TPSAFQIRYGGYKGVVAVD S KLSLR SMLK+ SE+ L++ S+ PC+LNR
Sbjct: 562 S-HTPSAFQIRYGGYKGVVAVDRNSFRKLSLRSSMLKFDSENRMLNVTKWSESMPCYLNR 620
Query: 305 QLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCG 364
++I+LLSTLG+ D +F+ Q++ + +L +LT+ A + LE ++ ++ N+L ++L+ G
Sbjct: 621 EIISLLSTLGVADEIFQALQQKQLYRLRKMLTNKESALDVLENLAWADSKNILVQMLLQG 680
Query: 365 YKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSAS 424
Y+P+VEP+L MMLQ + ++L+ELR+R RIF+ GR ++GCLDE+G L+ GQV+V+ + +
Sbjct: 681 YEPNVEPYLSMMLQAYHENSLMELRSRCRIFVPKGRILIGCLDESGILDYGQVYVRITMT 740
Query: 425 RRR-EFLDNSCNNRSGE-LGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHH--MVDCVV 480
+ + D S + E + G+V V KNPCLHPGD+RVL AV L +VDC++
Sbjct: 741 KAELQCCDQSFFRKVDESTSTIIGEVAVTKNPCLHPGDIRVLEAVYDVELEEKGLVDCII 800
Query: 481 FPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVE 540
FP G RPH NECSG DLDGD +F+ WD L+P PMDY ++++ ++T+E+++
Sbjct: 801 FPQNGGRPHPNECSGGDLDGDQFFISWDEGLLPCHTEAPMDYVGGRQRIMDHNVTLEEIQ 860
Query: 541 EYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSG 600
+F DY++ND+LG I AH+VHAD EPDKARS +CL+LA L ++AVDF+KTG A +P
Sbjct: 861 RFFVDYMINDTLGAISTAHLVHADCEPDKARSEKCLQLATLHSMAVDFAKTGAPAEMPLY 920
Query: 601 LRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVD 660
L+ +PDFME+ +K Y S V+GKLYR + D + ++K++A +YD D+EV
Sbjct: 921 LKPREFPDFMERAEKQMYISDGVLGKLYRDIHDSTRQERSNFMWSKKIAEATYDQDLEVK 980
Query: 661 GFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIME----MAKSFDKKRDL-EA 715
GFED++ A YK +Y ++ LMDYYG KTE EIL+G + + + K D+ +
Sbjct: 981 GFEDFLGIASIYKEKYMEKMSTLMDYYGAKTEDEILTGNLRHRPTYLQRDNRKYGDVKDR 1040
Query: 716 IIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFL 775
I+ ++K+LKKEA+ WF ES + + ASAWYHV YHP+Y+ R + L
Sbjct: 1041 ILVSLKNLKKEAKEWF----ESSCNPTEHQCMASAWYHVTYHPTYF-------HERMNCL 1089
Query: 776 SFPWCIHDKLIEIKRGKQRS 795
SFPW + D L+ IK R+
Sbjct: 1090 SFPWIVGDILLNIKSLNSRN 1109
>gi|255540733|ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223550546|gb|EEF52033.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
Length = 983
Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/801 (46%), Positives = 520/801 (64%), Gaps = 25/801 (3%)
Query: 8 LETLFHLRECCYEPVRWLEEQYR--KYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYF 65
L+ L L CY+P+ ++++Q L R F +S ++ ++ ++ L+TPSK+Y
Sbjct: 176 LQKLHKLAVTCYDPLAFIKKQLHVPGRNLKRPFFSSSKNLVNHNIMSCHRALITPSKIYC 235
Query: 66 SGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST--NEERHTTIYER 123
GPE+ SN VV+++ +F+R++FV+ED KL + +S I + T IY R
Sbjct: 236 LGPELESSNYVVKNFASYASDFMRVTFVEEDWSKLPANAISMSIQRGIFAKPFRTGIYHR 295
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
+LS LR+GIVIG KKFE LAFS SQ++ NS+WMFAS + A +IRE MG F I +++K
Sbjct: 296 ILSILRDGIVIGAKKFEFLAFSASQLRSNSVWMFASNDKKKAEEIREWMGCFNKIHSISK 355
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCG 243
AAR+GQ F SS++ V D+EIIPD+EV DGI YCFSDGIGKIS A VA+ CG
Sbjct: 356 CAARMGQLFSSSKQTFIVSPQDMEIIPDIEVTSDGINYCFSDGIGKISLSFARQVAQKCG 415
Query: 244 FTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLN 303
TPSAFQIRYGGYKGV+AVD S KLSLR SM K++SE+ L++ S+ PC+LN
Sbjct: 416 LN-RTPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSMCKFESENRMLNVTKWSESMPCYLN 474
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMC 363
R++ITLL+TLG++D +FE Q++ + L+ +LT+ A LE ++ N+L ++L+
Sbjct: 475 REIITLLTTLGVKDEIFEGLQQQQLQLLNRMLTNRESALNVLENLAWANCKNILIKMLVQ 534
Query: 364 GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA 423
GY+P+VEP+L MMLQ + + L+ELR+R RIF+ GR ++GCLDET L+ GQV+V+ +
Sbjct: 535 GYEPNVEPYLSMMLQAYHENLLVELRSRCRIFVPKGRILIGCLDETRILDYGQVYVRITM 594
Query: 424 SRRR-EFLDNSCNNRSGEL-GVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHH--MVDCV 479
++ + D + +R E VV GKV+V KNPCLHPGD+RVL AV L +VDC+
Sbjct: 595 TKAELQDADQASFHRVDETTAVVTGKVIVTKNPCLHPGDIRVLEAVYEVELEEKGLVDCI 654
Query: 480 VFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDV 539
+FP KG+RPH NECSG DLDGD +F+ WD LIP PMDY + + D+T+E++
Sbjct: 655 LFPQKGERPHPNECSGGDLDGDQFFISWDKGLIPGETESPMDYQGRRPRKMDHDVTLEEI 714
Query: 540 EEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPS 599
+++F DY++ND+LG I AH+VHAD EPDKARS++CL+LA+L ++AVDF+KTG A +P
Sbjct: 715 QKFFIDYMINDTLGAISTAHLVHADREPDKARSSKCLQLAELHSMAVDFAKTGAPAEMPK 774
Query: 600 GLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEV 659
L+ + +PDFME+ DK Y S V+GKLYR D + +T+ +A +YD D+EV
Sbjct: 775 ALKPKEFPDFMERIDKKMYISGGVLGKLYRGTLDSTRQQRSKFVWTENIAEATYDHDLEV 834
Query: 660 DGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSF--DKKR---DLE 714
GFE+++ A +K Y +L LMDYY K E EIL+G + A D +R +
Sbjct: 835 KGFEEFVEIAISHKDMYVEKLSGLMDYYEAKKEDEILTGNLQNKAMYLQRDNRRYGDTKD 894
Query: 715 AIIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHF 774
I+ +VKSL+KEA+ WF ES ++ ASAWYHV YHPSY+ +EG+
Sbjct: 895 RILISVKSLQKEAKEWF----ESCCQAKEKQRLASAWYHVTYHPSYF----QEGIT---C 943
Query: 775 LSFPWCIHDKLIEIKRGKQRS 795
LSFPW + D L+ IK ++
Sbjct: 944 LSFPWIVADILLNIKSANSKN 964
>gi|225457089|ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
gi|297733815|emb|CBI15062.3| unnamed protein product [Vitis vinifera]
Length = 1127
Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/806 (45%), Positives = 516/806 (64%), Gaps = 37/806 (4%)
Query: 8 LETLFHLRECCYEPVRWLEEQYRKYVLSRRFL--TSPAVALDDGLIYVNKVLVTPSKVYF 65
L+ L + Y+P+ +++ Q ++ + L +S + ++ ++ ++VLVTPSK+Y
Sbjct: 326 LQKLHKRKSTRYDPISFIKAQAHIINMNIKNLPPSSHSRLTNNNVMSCHRVLVTPSKIYC 385
Query: 66 SGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST--NEERHTTIYER 123
GPE+ SN VV+ Y +F+R+SFV+ED KL S LS I + T IY R
Sbjct: 386 LGPELESSNYVVKHYAAYASDFVRVSFVEEDWSKLPSNALSMSIRKAFFADPFRTEIYHR 445
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
+LS LR GIVIG K+F+ LAFS SQ++ NS+WMFAS ++ DIRE MG F+ I++V+K
Sbjct: 446 ILSILREGIVIGAKRFQFLAFSASQLRSNSVWMFASNDKVRVDDIREWMGCFKKIRSVSK 505
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCG 243
AAR+GQ F SS + L V D+E+IPD+EV DG YCFSDGIGKIS A+ VA+ CG
Sbjct: 506 CAARMGQLFSSSVQTLPVPVQDVEVIPDIEVTSDGFGYCFSDGIGKISLSFAKQVAQKCG 565
Query: 244 FTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLN 303
TPSAFQIRYGGYKGV+AVD S KLSLR SMLK++S++ L++ S+ PC+LN
Sbjct: 566 LH-QTPSAFQIRYGGYKGVIAVDRNSFRKLSLRSSMLKFESQNRMLNVTKWSESTPCYLN 624
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMC 363
R++++LLSTLG+ D FE E + LD +LT+ A + LE M +N N+L ++L+
Sbjct: 625 REIVSLLSTLGVEDENFEALLNEQMHLLDKMLTNRQAALDVLESMGGIDNKNILAKMLLQ 684
Query: 364 GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA 423
GY+P+VEP+L MMLQ +R S L ++RTR RIF+ R ++GCLDETG L GQV+V+ +
Sbjct: 685 GYEPNVEPYLSMMLQAYRESQLSDIRTRCRIFVPKARVLIGCLDETGILNYGQVYVRVTM 744
Query: 424 SRRREFLDNSCNNRS------GELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHH--M 475
++ ++ C N+S VV GKV+V KNPCLHPGD+RVL AV L +
Sbjct: 745 TKA----EHKCRNQSFFQKVDDTTSVVIGKVIVTKNPCLHPGDIRVLDAVYEVELEEKGL 800
Query: 476 VDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMT 535
VDC++FP KG+RPH NECSG DLDGD +F+CWD LIP PMDYT +++ D+T
Sbjct: 801 VDCILFPQKGERPHPNECSGGDLDGDQFFICWDEGLIPSQTEAPMDYTSRRPRIMDHDVT 860
Query: 536 IEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAA 595
+E+++++F DY++ND+LGVI AH+VHAD EP+KARS +CLELA L ++AVDF+KTG A
Sbjct: 861 LEEIQKFFVDYMINDTLGVISTAHLVHADREPEKARSKKCLELATLHSMAVDFAKTGAPA 920
Query: 596 TIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSF--TKEVAMQSY 653
+P L+ + +PDFME+ DK Y S +GKLYRA IA SF + + +Y
Sbjct: 921 EMPRVLKPKEFPDFMERVDKPMYISNGALGKLYRAT--IASRVNEKSSFVWSGTIPGAAY 978
Query: 654 DTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIME--MAKSFDKKR 711
D D+EVDGFE ++ A +K Y ++ LM++YG ++E E+L+G + M D +R
Sbjct: 979 DHDLEVDGFETFLEIAKLHKEMYAEKMATLMNFYGAESEDEMLTGNLRNKLMYLQRDNRR 1038
Query: 712 DLEA---IIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEG 768
E I+ +VKSL+KEA+ W + H+ + ASAWYHV YH ++
Sbjct: 1039 FTEMKDRILISVKSLQKEAKEWLYGSCKP-HQHQKM---ASAWYHVTYHSTF-------S 1087
Query: 769 MNRTHFLSFPWCIHDKLIEIKRGKQR 794
+FLSFPW + + L+ IK R
Sbjct: 1088 SQTPNFLSFPWIVGEVLLVIKSANSR 1113
>gi|302812554|ref|XP_002987964.1| hypothetical protein SELMODRAFT_126929 [Selaginella moellendorffii]
gi|300144353|gb|EFJ11038.1| hypothetical protein SELMODRAFT_126929 [Selaginella moellendorffii]
Length = 1052
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/783 (48%), Positives = 504/783 (64%), Gaps = 52/783 (6%)
Query: 27 EQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDN 86
E Y K R L P D G YV +++VTP+KVY +GPE+ SN V R Y D N
Sbjct: 301 ESYLKCHHRRSELVEP----DGGYTYVKRLVVTPTKVYCTGPELERSNGVTRRYKDFAAN 356
Query: 87 FLRLSFVDEDLDKLYS------TVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFE 140
FLR+SFVDE+ + LY+ T +S I E +++Y RVL+ +R+G+ IG KKF+
Sbjct: 357 FLRVSFVDENFETLYADAVRLPTKVSVQIGLLPEP--SSVYHRVLAVVRDGVTIGGKKFK 414
Query: 141 TLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALH 200
L FS SQ++++S+WMFA +TA IR MGDF N+AK AAR+GQSF SSR +L
Sbjct: 415 FLGFSASQLREHSLWMFADAGSVTAESIRAWMGDFGGFTNIAKCAARIGQSFSSSRSSLE 474
Query: 201 VDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYK 260
V ++ + D+ G YCFSDG+GKIS A VA+ C + SA QIRY GYK
Sbjct: 475 VLEDELSSVEDIYC---GTRYCFSDGVGKISKAFATSVARACNMPVVL-SALQIRYAGYK 530
Query: 261 GVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVF 320
GVVAVDPT STKLSLR SMLK+ SE T LD+L S+Y P +LNRQ I L++TLG+ D VF
Sbjct: 531 GVVAVDPTCSTKLSLRPSMLKFPSERTGLDVLKASQYAPYYLNRQSIILMTTLGVPDEVF 590
Query: 321 EKKQREGVAQLDAILTDPLKAHEALELMSSG-ENTNVLKELLMCGYKPDVEPFLLMMLQT 379
E+ Q+E + LD +L+DP A E L SSG E +++ +L GYKP EPFL +L
Sbjct: 591 ERMQKEELKILDEMLSDPQTAIEVLRSSSSGGEAHSIMVAMLQAGYKPAHEPFLRRLLDN 650
Query: 380 FRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSG 439
FR+ L LRT++RI++ GR ++GCLDETG L+ GQVFVQ +R +++C
Sbjct: 651 FRSLQLYLLRTKSRIYVPKGRCLLGCLDETGVLDYGQVFVQVGVTRS----ESAC----- 701
Query: 440 ELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLD 499
VV GKVVV KNPCLHPGD+ VL AVDVP LHHM+DCVVFP +GKRPH NECSGSDLD
Sbjct: 702 ---VVLGKVVVTKNPCLHPGDLLVLEAVDVPGLHHMIDCVVFPQRGKRPHPNECSGSDLD 758
Query: 500 GDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAH 559
GD+YFV WD L+PP+ PMDY P L +T+E+++ +F D +V+DSLGVI NAH
Sbjct: 759 GDLYFVTWDKSLVPPVTHEPMDYEPGTAAKLDHSVTLEEIQRFFVDSMVHDSLGVISNAH 818
Query: 560 VVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYE 619
+VHAD E ++A+ +CLELA+L++ AVDF+KTG+ A IP LR YPDFME + K+ Y
Sbjct: 819 LVHADKELERAKDPKCLELARLASTAVDFAKTGIPAVIPVDLRPRDYPDFMENEFKSTYT 878
Query: 620 SQRVIGKLYRAVKD----IAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTE 675
SQ V+GKLYR+++ + ++ + + KE+ Q +D + VDG+E ++++A K
Sbjct: 879 SQSVLGKLYRSLQSNGRIFSQRSSAVAASPKEMD-QEFDRSLTVDGYEQHVSEARSLKEL 937
Query: 676 YDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDK-KRD--LEAIIFAVKSLKKEARAWFN 732
YD +L L+ +Y I TEAEI++G ++ + K+ +K KR+ + I A+KSL KEA WF
Sbjct: 938 YDTKLERLLRHYEI-TEAEIVTGNVLCLGKANEKTKRNDTRDRIACAMKSLAKEAGRWFE 996
Query: 733 KKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIH---DKLIEIK 789
+E AKA AWYHV YHP + +G N LSFPW + +KL+ +K
Sbjct: 997 A-----GLNEHQLAKACAWYHVTYHPEF-----RKGSN-VESLSFPWVVPAVVEKLVSLK 1045
Query: 790 RGK 792
R K
Sbjct: 1046 RAK 1048
>gi|302819337|ref|XP_002991339.1| hypothetical protein SELMODRAFT_448382 [Selaginella moellendorffii]
gi|300140919|gb|EFJ07637.1| hypothetical protein SELMODRAFT_448382 [Selaginella moellendorffii]
Length = 1134
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/792 (48%), Positives = 507/792 (64%), Gaps = 49/792 (6%)
Query: 27 EQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDN 86
E Y K R L P D G YV +++VTP+KVY +GPE+ SN V R Y D N
Sbjct: 362 ESYLKCHHRRSELVEP----DGGYTYVKRLVVTPAKVYCTGPELERSNGVTRRYKDFAAN 417
Query: 87 FLRLSFVDEDLDKLYS------TVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFE 140
FLR+SFVDE+ + LY+ T +S I E +++Y RVL+ +R+G+ IG KKF+
Sbjct: 418 FLRVSFVDENFETLYADAVRLPTKVSVQIGLLPEP--SSVYHRVLAVVRDGVTIGGKKFK 475
Query: 141 TLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALH 200
L FS SQ++++S+WMFA +TA IR MGDF N+AK AAR+GQSF SSR +L
Sbjct: 476 FLGFSASQLREHSLWMFAGAGSVTAESIRAWMGDFGGFTNIAKCAARIGQSFSSSRSSLE 535
Query: 201 VDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYK 260
V ++ + D+ G YCFSDGIGKIS A VA+ C + PSA QIRY GYK
Sbjct: 536 VLEDELSSVEDIYC---GTRYCFSDGIGKISKAFATSVARACNMPV-VPSALQIRYAGYK 591
Query: 261 GVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVF 320
GVVAVDPT STKLSLR SMLK+ SE T LD+L S+Y P +LNRQ I L++TLG+ D VF
Sbjct: 592 GVVAVDPTCSTKLSLRPSMLKFPSERTGLDVLKASQYAPYYLNRQSIILMTTLGVPDEVF 651
Query: 321 EKKQREGVAQLDAILTDPLKAHEALELMSSG-ENTNVLKELLMCGYKPDVEPFLLMMLQT 379
E+ Q E + LD +L DP A E L SSG E +++ +L GYKP EPFL +L
Sbjct: 652 ERMQNEELKILDEMLRDPQTAIEVLRSSSSGGEVHSIMVAMLQAGYKPAHEPFLRRLLDN 711
Query: 380 FRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSAS-RRREFLDNSCNN-- 436
FR+ L LRT++RI++ GR ++GCLDETG L+ GQVFVQ S + R +D+ ++
Sbjct: 712 FRSLQLYLLRTKSRIYVPKGRCLLGCLDETGVLDYGQVFVQVSPTPGTRRVVDDGLDDAR 771
Query: 437 ------RSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHT 490
RS VV GKVVV KNPCLHPGD+ VL AVDVP LHHM+DCVVFP +GKRPH
Sbjct: 772 PRRGVTRSESACVVLGKVVVTKNPCLHPGDLLVLEAVDVPGLHHMIDCVVFPQRGKRPHP 831
Query: 491 NECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVND 550
NECSGSDLDGD+YFV WD L+PP+ PMDY P L +T+E+++++F D +V+D
Sbjct: 832 NECSGSDLDGDLYFVTWDKSLVPPVTHEPMDYEPGTAAKLDHSVTLEEIQQFFVDSMVHD 891
Query: 551 SLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFM 610
SLGVI NAH+VHAD E ++A+ +CLELA+L++ AVDF+KTG+ A IP LR YPDFM
Sbjct: 892 SLGVISNAHLVHADKELERAKDPKCLELARLASTAVDFAKTGIPAVIPVDLRPRDYPDFM 951
Query: 611 EKQDKTCYESQRVIGKLYRAVKD----IAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYI 666
E + K+ Y SQ V+GKLYR+++ + ++ + + KE+ + +D + VDG+E ++
Sbjct: 952 ENEFKSTYTSQSVLGKLYRSLQSNGRIFSQRSSAVAASPKEMD-EEFDRSLIVDGYEQHV 1010
Query: 667 TDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDK-KRD--LEAIIFAVKSL 723
+A K YD +L L+ +Y I TEAEI++G ++ + K+ +K KR+ + I A+KSL
Sbjct: 1011 AEARLLKELYDTKLERLLRHYEI-TEAEIVTGNVLCLGKANEKTKRNDTRDRIACAMKSL 1069
Query: 724 KKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIH- 782
KEA WF +E AKA AWYHV YHP + +G N LSFPW +
Sbjct: 1070 AKEAGRWFEA-----GLNEHQLAKACAWYHVTYHPEF-----RKGSN-VESLSFPWVVPA 1118
Query: 783 --DKLIEIKRGK 792
+KL+ +KR K
Sbjct: 1119 VVEKLVSLKRAK 1130
>gi|302814495|ref|XP_002988931.1| hypothetical protein SELMODRAFT_235652 [Selaginella moellendorffii]
gi|300143268|gb|EFJ09960.1| hypothetical protein SELMODRAFT_235652 [Selaginella moellendorffii]
Length = 755
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/757 (47%), Positives = 488/757 (64%), Gaps = 30/757 (3%)
Query: 43 AVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYS 102
AVA D+G IYV +VLVTP KVYF GPE+ SNRV R + ++DNFLR++FVDED D L S
Sbjct: 14 AVAADEGQIYVKRVLVTPLKVYFIGPELEESNRVTRHFSHKLDNFLRVTFVDEDFDSLSS 73
Query: 103 TVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPE 162
VLS TN E +Y R+L+ LR GI + K F+ LAFS SQ+++NS+WMFA E
Sbjct: 74 YVLSSSRGRTNTE----VYYRLLAILRLGIKLCGKDFQFLAFSASQLRENSLWMFADDDE 129
Query: 163 LTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEV-EDDGITY 221
+T IR+ MGDF I+NVAK AAR+GQSF +S L V ++ + DVE +G Y
Sbjct: 130 VTGEYIRQWMGDFLSIRNVAKCAARMGQSFSTSTRTLDVPRGEVRQLSDVETFTPEGHKY 189
Query: 222 CFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLK 281
CFSDGIG IS E A VA+ C + PSAFQIRYGGYKGVVAVDP S KLSLR SM K
Sbjct: 190 CFSDGIGTISTEFATRVARRCRAST-VPSAFQIRYGGYKGVVAVDPASCFKLSLRPSMSK 248
Query: 282 YKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKA 341
+ SE T+LD+L ++Y P +LNR++I+LLSTL + D VFE+ Q V LD +L D
Sbjct: 249 FPSEQTTLDVLEKTRYIPSYLNREIISLLSTLEVPDEVFERMQAHQVELLDRMLLDSAAT 308
Query: 342 HEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRA 401
++ L ++ +GE +L +++ G+ P EP++ +LQ FRA+ LL L ++RIF+ GR
Sbjct: 309 YDVLRVLYAGECHKLLVSMVLAGFSPVTEPYMRSLLQAFRAAQLLSLEKKSRIFVPKGRL 368
Query: 402 MMGCLDETGTLESGQVFVQCSASR-----RREFLDNSCNNRSGELGVVEGKVVVAKNPCL 456
+MGCLDE L GQ FVQ S + D R+ V G VVVAKNPCL
Sbjct: 369 LMGCLDEQRVLRYGQCFVQVSPLQGVPVEEEIHCDRGVTARNQAFAVT-GSVVVAKNPCL 427
Query: 457 HPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ 516
HPGD+ VL AVDVP LHHMVDC+VFP +G RPH NECSGSDLDGD YFV WD LIPP +
Sbjct: 428 HPGDVLVLEAVDVPELHHMVDCIVFPQQGPRPHPNECSGSDLDGDQYFVSWDSALIPPKR 487
Query: 517 FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCL 576
PPM+Y P L + +E+++E+F ++I +DSLGVI +AH+ +D + R +C+
Sbjct: 488 HPPMNYEAPPAMELDHSVRLEEIQEFFVNWITSDSLGVIAHAHLALSDWSELQTRDPKCM 547
Query: 577 ELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAP 636
ELA+L ++AVDF KTGV A +P LR E YPDFMEK++K Y S RVIGKLYR++++
Sbjct: 548 ELARLYSVAVDFPKTGVPAVMPPELRPEQYPDFMEKRNKRTYISTRVIGKLYRSIRESHR 607
Query: 637 PTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEIL 696
T T ++ Q YD + V G++ ++ +A +K Y+++L +++++Y + +EAEI+
Sbjct: 608 DTNTSPLVSERSFDQQYDRALVVQGYQSHLEEAKFFKECYNSKLTSILNHYKV-SEAEIM 666
Query: 697 SGCIMEMAKSFDKKRDLEA---IIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYH 753
SG I +A+ + ++R +A ++ A K+L KEAR WF+ E + + AKA AWYH
Sbjct: 667 SGSIRSLAR-YSRRRQGDAMARVVLAAKALVKEARGWFDDGGE--ITENEACAKAFAWYH 723
Query: 754 VAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIKR 790
V YHP E + LSFPW + L+ IK+
Sbjct: 724 VTYHP--------EARKESDLLSFPWVV---LVAIKK 749
>gi|315307484|gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]
Length = 1147
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/797 (45%), Positives = 513/797 (64%), Gaps = 31/797 (3%)
Query: 8 LETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSG 67
L+ L L+ CY PV +++ + R L+ + ++ + L+TP+K+Y G
Sbjct: 329 LQKLRLLQSPCYNPVSFVKAKLPTGKNYRIPLSVSERLKNHNVMSCRRALITPTKIYCLG 388
Query: 68 PEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEER--HTTIYERVL 125
PE+ +N VV+++ + +F+R++FV+ED KL + +S + R T IY+R+L
Sbjct: 389 PELETANYVVKNFVEYASDFMRVTFVEEDWSKLSANAISTGVHLGVFSRPFKTKIYDRIL 448
Query: 126 STLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYA 185
L+NGIVIGDK+FE LAFS SQ++ NS+WMFAS E+ A DIRE MG F+ I++++K A
Sbjct: 449 YVLQNGIVIGDKRFEFLAFSASQLRSNSVWMFASNDEVKAEDIREWMGCFKKIRSISKCA 508
Query: 186 ARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFT 245
+R+GQ F SS L V D+EII D+EV+ DGI YCFSDGIGKIS A VA+ CG
Sbjct: 509 SRMGQLFSSSMPTLVVPVQDVEIIDDIEVKTDGINYCFSDGIGKISLPFARQVAEKCGLN 568
Query: 246 IYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLNRQ 305
+ PSAFQIRYGGYKGVVAVD S K+SLR SMLK++S+ L++ S+ PCFLNR+
Sbjct: 569 -HIPSAFQIRYGGYKGVVAVDRNSFWKMSLRDSMLKFESKVRMLNVTKWSESMPCFLNRE 627
Query: 306 LITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGY 365
++TL STLGI+D VFE+ Q E + L +LT+ A + L+ + + N+L E+L Y
Sbjct: 628 IVTLFSTLGIKDEVFERMQEEQLCLLGKMLTNREAALDTLQSLGGVNSKNILVEMLQF-Y 686
Query: 366 KPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASR 425
+P+V+P+L MMLQ + L +L++R RIF+ GR ++GCLDETGTL GQV++ C +
Sbjct: 687 EPNVQPYLSMMLQAHYENLLSDLKSRCRIFVPKGRILIGCLDETGTLNYGQVYL-CIKMK 745
Query: 426 RREFLDNSCNNRS------GELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHH--MVD 477
+ E C ++S E +V GKVVV KNPCLHPGD+RVL AV P L +VD
Sbjct: 746 KAEL---ECADQSYFRKVDEETAIVIGKVVVTKNPCLHPGDVRVLEAVYEPQLEEKGLVD 802
Query: 478 CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIE 537
C+VFP KG+RPH NECSG DLDGD +F+ WD +LIP PPMDYT +++ ++T+E
Sbjct: 803 CLVFPQKGERPHPNECSGGDLDGDQFFISWDKDLIPCQTEPPMDYTGRRPRIMDHEVTLE 862
Query: 538 DVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATI 597
+++++F DY++ND+LG I AH+VHAD EPDKA S CL LA L ++AVDF+KTG A +
Sbjct: 863 EIQKFFVDYMINDTLGAISTAHLVHADREPDKACSENCLALATLHSMAVDFAKTGAPAEM 922
Query: 598 PSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDM 657
P L+ +PDFM++ +K Y S V+GKLYRA + T + +TKE+A YD D+
Sbjct: 923 PRALKPREFPDFMQRGNKPMYTSSGVLGKLYRATINSTVQTRSKFVWTKEMAELVYDHDL 982
Query: 658 EVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSF--DKKR---D 712
EV+GFE I+ A +K Y+ R+ LM YY ++ E EIL+G I A+ D +R
Sbjct: 983 EVNGFESLISVAETHKEMYEERMSLLMSYYDVEYEDEILTGNIYNKAQFLLRDNRRYGEM 1042
Query: 713 LEAIIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRT 772
E I+ +VK L++EA+ WF H+ + ASAWY+V YHP+Y+ +E MN
Sbjct: 1043 KERIVLSVKDLQREAKEWFKSSCSKADEHQKL---ASAWYYVTYHPNYF----QERMNS- 1094
Query: 773 HFLSFPWCIHDKLIEIK 789
LSFPW + D L+ +K
Sbjct: 1095 --LSFPWIVGDILLRVK 1109
>gi|449518949|ref|XP_004166498.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cucumis sativus]
Length = 1117
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/799 (45%), Positives = 510/799 (63%), Gaps = 30/799 (3%)
Query: 6 HALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLT-SPAVALDDGLIYVNKVLVTPSKVY 64
+ L+ L L+ CY+P+ +L+ Q Y + + L S L + ++ +VLVTPS++Y
Sbjct: 325 NVLQRLHQLKFVCYDPLSFLKTQLHVYKRNCKSLPPSSQKRLSNNVMNCYRVLVTPSRIY 384
Query: 65 FSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISS--TNEERHTTIYE 122
GPE+ SN VV+++ +F+R++FV+ED KL + ++ I ++ T IY
Sbjct: 385 CLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKLPAGAVTTSIQRGILSKPYRTEIYH 444
Query: 123 RVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVA 182
R+++ LR+GIVIG K+FE LAFS SQ++ NS+WMFAS L A +IR+ MG F I++++
Sbjct: 445 RIMTVLRDGIVIGAKRFEFLAFSASQLRSNSVWMFASSDNLKAEEIRQWMGCFEKIRSIS 504
Query: 183 KYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNC 242
K AAR+GQ F SS + L V + D+EIIPD+EV DGI YCFSDGIGKIS A VA C
Sbjct: 505 KCAARMGQLFSSSTQTLVVPTRDVEIIPDIEVNTDGIDYCFSDGIGKISLSFARQVADKC 564
Query: 243 GFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFL 302
G + PSAFQIRYGGYKGV+AVD S KLSLR SMLK++S++ L++ PC+L
Sbjct: 565 GVN-HIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSMLKFESKNKMLNVTKCCDSMPCYL 623
Query: 303 NRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLM 362
NR++ TLLSTLG++D FE Q+E + L +LTD A LE ++ N+L ++L
Sbjct: 624 NREIATLLSTLGVKDESFEALQQEQLHLLKRMLTDKDVALNVLENFHGADSNNILVQMLN 683
Query: 363 CGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCS 422
GY+P++EP+L MMLQ + +LR+R RIF+ GR ++GCLDETG L GQV+ +
Sbjct: 684 HGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKGRILLGCLDETGILNYGQVYACIT 743
Query: 423 ASRRREFLDNSCNNRSGEL----GVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHH--MV 476
++ L N N + ++ GKVVV KNPCLHPGD+RVL A+ L +V
Sbjct: 744 LTKSE--LQNRNQNYFHTIDETKSILLGKVVVTKNPCLHPGDVRVLEAIFHVELEEKGLV 801
Query: 477 DCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTI 536
DC++FP KG RPHTNECSG DLDGD+YF+ WD LIPP PMDYT +++ D+ +
Sbjct: 802 DCLIFPQKGARPHTNECSGGDLDGDLYFISWDENLIPPKTEAPMDYTGRRPRIMDHDVKL 861
Query: 537 EDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAAT 596
E+++++F DY++ND+LG I AH+VHAD EP KA S +CLELA L ++AVDF+KTG A
Sbjct: 862 EEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAKCLELAALHSMAVDFAKTGAPAE 921
Query: 597 IPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYR-AVKDIAPPTATIKSFTKEVAMQSYDT 655
+P L+ +PDFME+ DK Y S V+GKLYR AVK I + + +++E A YD
Sbjct: 922 MPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAVKSIEQERSRL-VWSEEAARAIYDY 980
Query: 656 DMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKR---- 711
D+EVDGFE ++ A YK Y ++ LM+YYG + E EIL G + A +
Sbjct: 981 DLEVDGFEAFLEIAETYKEMYIEKMSILMNYYGAEYEDEILMGDLRSRASYLQRDNRKYG 1040
Query: 712 DL-EAIIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMN 770
D+ + I+ +VK+L+KE + WF +N D + + ASAWYHV YHPSY +KE+
Sbjct: 1041 DMKDRILLSVKNLRKEVKEWF--ENSCDPLNRRMM--ASAWYHVTYHPSY---FKED--- 1090
Query: 771 RTHFLSFPWCIHDKLIEIK 789
+LSFPW + D L+ IK
Sbjct: 1091 -MFYLSFPWAVSDVLLNIK 1108
>gi|315307478|gb|ADU04140.1| hypothetical protein [Gossypium hirsutum]
Length = 1147
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/800 (45%), Positives = 517/800 (64%), Gaps = 37/800 (4%)
Query: 8 LETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSG 67
L+ L L+ CY PV +++ + R L+ + ++ ++ L+TP+K+Y G
Sbjct: 329 LQKLRLLQSPCYNPVSFVKAKLPTGKNFRIPLSVSERLKNHNVMSCHRALITPTKIYCLG 388
Query: 68 PEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEER--HTTIYERVL 125
PE+ +N VV+++ + +F+R++FV+ED KL + +S + R T IY+R+L
Sbjct: 389 PELETANYVVKNFAEYASDFMRVTFVEEDWSKLSANAISTGVHLGVFSRPFKTKIYDRIL 448
Query: 126 STLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYA 185
S L+NGIVIGDK+F+ LAFS SQ++ NS+WMFAS E+ A DIRE MG F+ I++++K A
Sbjct: 449 SILQNGIVIGDKRFKFLAFSASQLRSNSVWMFASNDEVKAEDIREWMGCFKKIRSISKCA 508
Query: 186 ARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFT 245
+R+GQ F SS L V D+EII D+EV+ DGI YCFSDGIGKIS A VA+ CG
Sbjct: 509 SRMGQLFSSSMPTLVVPVQDVEIIDDIEVKTDGINYCFSDGIGKISLPFARQVAEKCGLN 568
Query: 246 IYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLNRQ 305
+ PSAFQIRYGGYKGVVAVD S K+SLR SMLK++S+ L++ S+ PCFLNR+
Sbjct: 569 -HIPSAFQIRYGGYKGVVAVDRNSFWKMSLRDSMLKFESKVRMLNVTKWSESMPCFLNRE 627
Query: 306 LITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGY 365
++TL STLGI+D VFE+ Q E + L +LT+ A + L+ + + N+L E+L
Sbjct: 628 IVTLFSTLGIKDEVFERMQEEQLCLLGKMLTNREAALDTLQSLGGVNSKNILVEMLQFD- 686
Query: 366 KPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASR 425
+P+V+P+L MMLQ + L +L++R RIF+ GR ++GCLDETGTL GQV++ C +
Sbjct: 687 EPNVQPYLSMMLQAHYENLLSDLKSRCRIFVPKGRILIGCLDETGTLNYGQVYL-CIKMK 745
Query: 426 RREFLDNSCNNRS------GELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHH--MVD 477
+ E C ++S E +V GKVVV KNPCLHPGD+RVL AV P L +VD
Sbjct: 746 KAEL---ECADQSYFRKVDEETAIVIGKVVVTKNPCLHPGDVRVLEAVYEPQLEEKGLVD 802
Query: 478 CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIE 537
C+VFP KG+RPH NECSG DLDGD +F+ WD +LIP PPMDYT +++ ++T+E
Sbjct: 803 CLVFPEKGERPHPNECSGGDLDGDQFFISWDKDLIPCQTEPPMDYTGRRPRIMDHEVTLE 862
Query: 538 DVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATI 597
+++++F DY++ND+LG I AH+VHAD EP KARS CL LA L ++AVDF+KTG A +
Sbjct: 863 EIQKFFVDYMINDTLGAISTAHLVHADREPYKARSENCLALATLHSMAVDFAKTGAPAEM 922
Query: 598 PSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKS---FTKEVAMQSYD 654
P L+ +PDFM++ +K Y S V+GKLYRA + T I+S +TKE+A +YD
Sbjct: 923 PRALKPREFPDFMQRGNKPMYTSSGVLGKLYRATIN---STVQIRSKFVWTKEMAELAYD 979
Query: 655 TDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSF--DKKR- 711
D+EV+GFE I+ A +K Y+ R+ LM YY ++ E EIL+G + A+ D +R
Sbjct: 980 HDLEVNGFESLISVAETHKEMYEERMSLLMSYYDVEYEDEILTGNMYNKAQFLLRDNRRY 1039
Query: 712 --DLEAIIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGM 769
E I+ +VK L++EA+ WF H+ + ASAWY+V YHP+Y+ EE M
Sbjct: 1040 GEMKERIVLSVKDLQREAKEWFKSSCSKADEHQKL---ASAWYYVTYHPNYF----EERM 1092
Query: 770 NRTHFLSFPWCIHDKLIEIK 789
N LSFPW + D L+ IK
Sbjct: 1093 NS---LSFPWIVGDILLRIK 1109
>gi|449440690|ref|XP_004138117.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cucumis sativus]
gi|316989905|gb|ADU77018.1| RNA-dependent RNA polymerase 2 [Cucumis sativus]
Length = 1117
Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/797 (45%), Positives = 508/797 (63%), Gaps = 26/797 (3%)
Query: 6 HALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLT-SPAVALDDGLIYVNKVLVTPSKVY 64
+ L+ L L+ CY+P+ +L+ Q Y + + L S L + ++ +VLVTPS++Y
Sbjct: 325 NVLQRLHQLKFVCYDPLSFLKTQLHVYKRNCKSLPPSSQKRLSNNVMNCYRVLVTPSRIY 384
Query: 65 FSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISS--TNEERHTTIYE 122
GPE+ SN VV+++ +F+R++FV+ED KL + ++ I ++ T IY
Sbjct: 385 CLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKLPAGAVTTSIQRGILSKPYRTEIYH 444
Query: 123 RVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVA 182
R+++ LR+GIVIG K+FE LAFS SQ++ NS+WMFAS L A +IR+ MG F I++++
Sbjct: 445 RIMTVLRDGIVIGAKRFEFLAFSASQLRSNSVWMFASSDNLKAEEIRQWMGCFEKIRSIS 504
Query: 183 KYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNC 242
K AAR+GQ F SS + L V + D+EIIPD+EV DGI YCFSDGIGKIS A VA C
Sbjct: 505 KCAARMGQLFSSSTQTLVVPTRDVEIIPDIEVNTDGIDYCFSDGIGKISLSFARQVADKC 564
Query: 243 GFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFL 302
G + PSAFQIRYGGYKGV+AVD S KLSLR SMLK++S++ L++ PC+L
Sbjct: 565 GVN-HIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSMLKFESKNKMLNVTKCCDSMPCYL 623
Query: 303 NRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLM 362
NR++ TLLSTLG++D FE Q+E + L +LTD A LE ++ N+L ++L
Sbjct: 624 NREIATLLSTLGVKDESFEALQQEQLHLLKRMLTDKDVALNVLENFHGADSNNILVQMLN 683
Query: 363 CGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVF--VQ 420
GY+P++EP+L MMLQ + +LR+R RIF+ GR ++GCLDETG L GQV+ +
Sbjct: 684 HGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKGRILLGCLDETGILNYGQVYACIT 743
Query: 421 CSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHH--MVDC 478
+ S + N + ++ GKVVV KNPCLHPGD+RVL A+ L +VDC
Sbjct: 744 LTKSELQSRNQNYFHTIDETKSILLGKVVVTKNPCLHPGDVRVLEAIFHVELEEKGLVDC 803
Query: 479 VVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIED 538
++FP KG RPHTNECSG DLDGD+YF+ WD LIPP PMDYT +++ D+ +E+
Sbjct: 804 LIFPQKGARPHTNECSGGDLDGDLYFISWDENLIPPKTEAPMDYTGRRPRIMDHDVKLEE 863
Query: 539 VEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIP 598
++++F DY++ND+LG I AH+VHAD EP KA S +CLELA L ++AVDF+KTG A +P
Sbjct: 864 IQKFFVDYMINDTLGAISTAHLVHADREPKKALSAKCLELAALHSMAVDFAKTGAPAEMP 923
Query: 599 SGLRVEIYPDFMEKQDKTCYESQRVIGKLYR-AVKDIAPPTATIKSFTKEVAMQSYDTDM 657
L+ +PDFME+ DK Y S V+GKLYR AVK I + + +++E A YD D+
Sbjct: 924 RVLKPREFPDFMERFDKPMYISSNVLGKLYRAAVKSIEQERSRL-VWSEEAARAIYDYDL 982
Query: 658 EVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKR----DL 713
EVDGFE ++ A YK Y ++ LM+YYG + E EIL G + A + D+
Sbjct: 983 EVDGFEAFLEIAETYKEMYIEKMSILMNYYGAEYEDEILMGDLRSRASYLQRDNRKYGDM 1042
Query: 714 -EAIIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRT 772
+ I+ +VK+L+KE + WF +N D + + ASAWYHV YHPSY +KE+
Sbjct: 1043 KDRILLSVKNLRKEVKEWF--ENSCDPLNRRMM--ASAWYHVTYHPSY---FKED----M 1091
Query: 773 HFLSFPWCIHDKLIEIK 789
+ SFPW + D L+ IK
Sbjct: 1092 FYFSFPWAVSDVLLNIK 1108
>gi|113205403|gb|ABI34378.1| RNA-directed RNA polymerase, putative [Solanum tuberosum]
Length = 1050
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/488 (69%), Positives = 393/488 (80%), Gaps = 8/488 (1%)
Query: 4 IEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKV 63
IE ALE L++L+ECCY+PVRWL EQY Y+ R+ SP++ LDDGL+YV +VLVTP KV
Sbjct: 156 IEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKV 215
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYER 123
YF GPE+++SNRV+R+Y ++IDNFLR+SFVDE+ +KLYST L P S+ N R T IYER
Sbjct: 216 YFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIR-TNIYER 274
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
+LSTLR G VIGDKKFE LAFS+SQ++DNS+WMFASRP LTA DIR MGDF IKNVAK
Sbjct: 275 ILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAK 334
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCG 243
YAARLGQSFGSS E L V +IE+IPDV+V G +Y FSDGIGKISA+ A VA CG
Sbjct: 335 YAARLGQSFGSSTETLSVLRHEIEVIPDVKVH--GTSYVFSDGIGKISADFARRVASKCG 392
Query: 244 FTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLN 303
YTPSAFQIRYGGYKGVVAVDP SS KLSLRKSM KY+S++ LD+L SKYQPCFLN
Sbjct: 393 LQ-YTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCFLN 451
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMC 363
RQLITLLSTLG++D + E+KQ+E V QLDAIL D LKA EALELMS GENTN+LK +L C
Sbjct: 452 RQLITLLSTLGVKDDILEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNC 511
Query: 364 GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA 423
GY PD EPFL MMLQTFRAS LL+LRT++RIFI NGRAMMGCLDE+ TLE GQVFVQ +
Sbjct: 512 GYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTG 571
Query: 424 SRRREF---LDNSCNNRSGELG-VVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
+ REF L N+RS +++G VVVAKNPCLHPGD+RVLRAV+VP+LHHMVDCV
Sbjct: 572 AGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVNVPALHHMVDCV 631
Query: 480 VFPAKGKR 487
VFP KGKR
Sbjct: 632 VFPQKGKR 639
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 206/367 (56%), Positives = 259/367 (70%), Gaps = 37/367 (10%)
Query: 455 CLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP 514
CL ++ V A +PS D ++ G PH NECSGSDLDGD+YFVCWD ++IPP
Sbjct: 675 CLPTSEVEVKSAYTLPS----SDSTLWYLTG--PHPNECSGSDLDGDIYFVCWDPDMIPP 728
Query: 515 LQFPPMDYTPAPEKVLARDMTIE-------------------------DVEEYFADYIVN 549
Q PM+Y PAP L D+TIE +VEEYF +YIVN
Sbjct: 729 RQVQPMEYPPAPSIQLDHDVTIERGDWPVCATTVQVLRNSFSPVCLLQEVEEYFTNYIVN 788
Query: 550 DSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDF 609
DSLG+I NAHVV AD EPD A S+ C +LA+L +IAVDF KTGV A IPS LR + YPDF
Sbjct: 789 DSLGIISNAHVVFADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAEIPSQLRPKEYPDF 848
Query: 610 MEKQ-DKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITD 668
M+K DKT Y S+RVIGKL+R VKD AP ++ FT++VA +SYD D+EVDGFEDYI +
Sbjct: 849 MDKPPDKTTYISERVIGKLFRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYIDE 908
Query: 669 AFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAVKSLKKEAR 728
AF YKTEYDN+LGNLM+YYGIKTEAEILSG IM+ +K+FD+++D EAI AV++L+KEAR
Sbjct: 909 AFDYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKTSKTFDRRKDAEAISIAVRALRKEAR 968
Query: 729 AWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEI 788
WF ++N+ D D+ KASAWYHV YHP+YWG Y +G+ R HF+SFPWC++D+LI+I
Sbjct: 969 TWFKRRNDID----DMLPKASAWYHVTYHPTYWGCY-NQGLKRDHFISFPWCVYDQLIQI 1023
Query: 789 KRGKQRS 795
K+ K R+
Sbjct: 1024 KKEKARN 1030
>gi|356513586|ref|XP_003525493.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
Length = 1262
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/788 (44%), Positives = 518/788 (65%), Gaps = 29/788 (3%)
Query: 18 CYEPVRWLEEQYRKYVLSRRFLTSPAVA----LDDGLIYVNKVLVTPSKVYFSGPEISLS 73
CYEP+++++ Q +VLS + P + D ++ ++ L+TP+K+Y GPE+ S
Sbjct: 339 CYEPLKFVKTQL--HVLSNKKKGLPQSSQKRLTDSNIMSCHRALITPTKIYCLGPELETS 396
Query: 74 NRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST--NEERHTTIYERVLSTLRNG 131
N VV+ + +F+R++FV+E+ +KL + +S + ++ T IY+R+L+ LR+G
Sbjct: 397 NHVVKHFASHASDFMRITFVEENWNKLPTNAVSTGVQKGLFSKPLKTEIYKRILTILRDG 456
Query: 132 IVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAARLGQS 191
IVIG K+FE LAFS SQ++ NS+W+FAS L AADIRE MG F +I++V+K AAR+GQ
Sbjct: 457 IVIGSKRFEFLAFSASQLRSNSVWLFASNDNLKAADIREWMGCFNNIRSVSKCAARMGQL 516
Query: 192 FGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSA 251
F SS + V S D+EIIPDVEV DG++YCFSDGIGKIS A VA+ +TPSA
Sbjct: 517 FSSSMQTFEVVSQDVEIIPDVEVISDGVSYCFSDGIGKISQSFARQVAQKLKLD-HTPSA 575
Query: 252 FQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLS 311
FQIRYGG+KGV+AVD S KLSLR SMLK++S+++ L + S+ PCFLNR++I+LLS
Sbjct: 576 FQIRYGGFKGVIAVDRRSFRKLSLRSSMLKFESKNSMLCVTKWSESMPCFLNREIISLLS 635
Query: 312 TLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEP 371
TLG++D V Q + + L +LTD A E LE ++ ++ ++L ++L +P+ EP
Sbjct: 636 TLGVKDEVLLAMQHDQLDLLGRMLTDSKAALEVLESLNGADSKSILVKMLHEFNEPNSEP 695
Query: 372 FLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRRE-FL 430
+L MML+ + A L +L++R RIF+ GR ++GCLDETG L GQVFV+ + ++ RE F
Sbjct: 696 YLSMMLKAYYAYQLSDLKSRCRIFVPKGRVLVGCLDETGLLNYGQVFVRITVTKTREKFG 755
Query: 431 DNSCNNRSGE--LGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHH--MVDCVVFPAKGK 486
D + G+ ++ GKVVV KNPCLHPGD+RVL A+ L + DC+VFP KG
Sbjct: 756 DENLRKVDGDDNTCIIVGKVVVTKNPCLHPGDIRVLDAIYSEELEEKGLRDCLVFPQKGH 815
Query: 487 RPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADY 546
RPH NECSG DLDGD++F+ WD +LIP PMDYT +++ +T+E+++++F DY
Sbjct: 816 RPHPNECSGGDLDGDLFFISWDKDLIPCQTEAPMDYTGRRPRIMDHKVTLEEIQQFFVDY 875
Query: 547 IVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIY 606
++ND+LG I AH+VHAD E DKA+S +CLELA+L ++AVDF+KTG A +P L+ +
Sbjct: 876 MINDTLGAISTAHLVHADREQDKAKSRKCLELAELHSMAVDFAKTGAPAAMPRVLKPREF 935
Query: 607 PDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYI 666
PDFME+ DK Y S+ V+GKLYRA+ + ++++ A ++YD +EV+GFE ++
Sbjct: 936 PDFMERVDKPMYISKGVLGKLYRAIIESQMQIRYSFVWSEKHAEEAYDRSLEVNGFEAFL 995
Query: 667 TDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSF--DKKR--DL-EAIIFAVK 721
A +K Y ++ +LMD+YG +TE E+L G + A D +R D+ + I+ +VK
Sbjct: 996 ETASTHKEMYAEKMSSLMDFYGAETEDEMLLGNLQNRASYLQRDNRRYGDMKDRILLSVK 1055
Query: 722 SLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCI 781
+L++EA+ WF E+ + ASAWYHV YHPSY+ R FLSFPW +
Sbjct: 1056 NLQREAKEWF----ETSCEPHEYKPMASAWYHVTYHPSYYCR------ESPCFLSFPWIV 1105
Query: 782 HDKLIEIK 789
+ L++I+
Sbjct: 1106 GEILLQIR 1113
>gi|357477317|ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula]
gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase [Medicago truncatula]
Length = 1308
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/801 (43%), Positives = 510/801 (63%), Gaps = 26/801 (3%)
Query: 8 LETLFHLRECCYEPVRWLEEQYRKYVLSRRFL--TSPAVALDDGLIYVNKVLVTPSKVYF 65
+ L + CYEP++++ Q + ++ + + +D+ ++ ++ L+TPSK+Y
Sbjct: 330 FQKLHKMNSTCYEPLKYVRTQLHVLSIKKKSVLPSQQKRLVDNNIMSCHRALITPSKIYC 389
Query: 66 SGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEER--HTTIYER 123
GPE+ SN VV+ + +F+R++FV+ED KL + +S + R T IY+R
Sbjct: 390 LGPELETSNHVVKHFAAYASDFMRITFVEEDWSKLPNNAISITLKKGMFSRPLRTEIYKR 449
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
VL+ LR+GI+IG K+FE LAFS SQ++ NS+W+FAS ++ AADIRE MG F +I++V+K
Sbjct: 450 VLNILRDGILIGSKRFEFLAFSASQLRSNSVWLFASNDKVKAADIREWMGSFNNIRSVSK 509
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCG 243
AAR+GQ F SSR+ + D+++IPD+E+ DGI YCFSDGIGKIS A +A+
Sbjct: 510 CAARMGQLFSSSRQTFEMAPQDVDLIPDIEITSDGIDYCFSDGIGKISQSFARQLAEKLK 569
Query: 244 F-TIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFL 302
PSAFQIRYGGYKGV+AVD S KLSLRKSMLK++S++ L + S+ PCFL
Sbjct: 570 LDENRIPSAFQIRYGGYKGVIAVDRHSFKKLSLRKSMLKFESKNRMLCVTKWSESMPCFL 629
Query: 303 NRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLM 362
NR++I+LLSTLGI+D Q + + L +LTD A + LE ++ ++ ++L ++L
Sbjct: 630 NREIISLLSTLGIKDEALLALQEDQLQLLGKMLTDKEAALDVLESLNGADSNSILVKMLH 689
Query: 363 CGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCS 422
Y+P+ EP+L MML+ L +L++R RIF+ GR ++GCLDETG L GQVFV+ +
Sbjct: 690 RFYEPNSEPYLSMMLKAHYTYQLSDLKSRCRIFVPKGRVLIGCLDETGLLNYGQVFVRIT 749
Query: 423 ASRRRE-FLDNSCNNRSGE--LGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHH--MVD 477
++ +E F D + N G+ ++ GKVVV KNPCLHPGD+RVL AV L + D
Sbjct: 750 VAKTKEKFGDENLRNVDGDDSTRIIVGKVVVTKNPCLHPGDIRVLDAVYSEELEEKGLRD 809
Query: 478 CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIE 537
C+VFP KG RPH NECSG DLDGD++F+ WD +LIP PMDYT +++ +T+E
Sbjct: 810 CLVFPQKGHRPHPNECSGGDLDGDLFFISWDKDLIPAQTENPMDYTGRRPRIMDHKVTLE 869
Query: 538 DVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATI 597
++ ++F DY++ND+LG I AH+VHAD E DKA+S +CLELA+L ++AVDF+KTG A +
Sbjct: 870 EIHQFFVDYMINDTLGAISTAHLVHADREHDKAKSRKCLELAELHSMAVDFAKTGAPAEM 929
Query: 598 PSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDM 657
P L+ +PDFME+ +K Y S+ V+GKLYRA D +++ A ++YD +
Sbjct: 930 PRSLKPREFPDFMERFEKPMYISKGVLGKLYRATIDSNLQVRFDMVMSEKFAKEAYDHQL 989
Query: 658 EVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSF--DKKR--DL 713
EVDGFE ++ A ++ Y ++ +LM +YG TE E+L+G + A D +R D+
Sbjct: 990 EVDGFEVFLETALSHRDMYAQKMISLMSFYGATTEDEMLTGNLQNRASYLQRDNRRYGDM 1049
Query: 714 -EAIIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRT 772
+ I+ +VK L+ EA+ WF ESD + ASAWYHV YHP Y+ + +
Sbjct: 1050 KDRILISVKDLQLEAKEWF----ESDCQPHEYQLMASAWYHVTYHPKYY-------IESS 1098
Query: 773 HFLSFPWCIHDKLIEIKRGKQ 793
FLSFPW + D L+ IK +
Sbjct: 1099 TFLSFPWIVGDILLHIKSANK 1119
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 71/93 (76%)
Query: 539 VEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIP 598
+ ++F DY++ D+LG I AH+VHAD E +KA+S +CLELA+L ++AVDF+KTG A +P
Sbjct: 1120 IHKFFVDYMIKDTLGAISTAHLVHADCESNKAKSRKCLELAELHSMAVDFAKTGALAEMP 1179
Query: 599 SGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAV 631
L+ + +PDFME+ +K Y S+ V+GKLYRA+
Sbjct: 1180 RVLKPKEFPDFMERFEKPMYVSKGVLGKLYRAL 1212
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 716 IIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFL 775
I + L+ E + WF ESD + ASAWYHV +HP Y+ + ++F+
Sbjct: 1237 INLKLMDLQLEVKEWF----ESDCQPHEHQLMASAWYHVIHHPKYYHK-------SSNFV 1285
Query: 776 SFPWCIHDKLIEIKRG 791
SFPW + D L+ +K
Sbjct: 1286 SFPWIVGDILLYVKHA 1301
>gi|51989474|gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
Length = 1120
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/803 (44%), Positives = 509/803 (63%), Gaps = 31/803 (3%)
Query: 8 LETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVA----LDDGLIYVNKVLVTPSKV 63
L+ + L+ C+EPV +++ R +VL + P+ + ++ ++ V++VLVTPSKV
Sbjct: 329 LQKMHKLQSTCFEPVPFIKT--RLHVLGKNSKNQPSSSYSRLVNQNMMSVHRVLVTPSKV 386
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST--NEERHTTIY 121
Y GPE+ SN +V+++ +FLR++FV+ED KL +S + + T IY
Sbjct: 387 YCLGPELETSNYIVKNFALHASDFLRVTFVEEDWGKLSPNAISMSVEQGIFAKPYRTKIY 446
Query: 122 ERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNV 181
R+LS LR+G+VIG K+F LAFS SQ++ NS+WMFAS + A DIRE MG F I++V
Sbjct: 447 HRILSILRDGLVIGSKRFLFLAFSASQLRSNSVWMFASNEHVKAEDIREWMGCFNKIRSV 506
Query: 182 AKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKN 241
+K AAR+GQ F +S + + V S +EI+PD+EV DG++YCFSDGIGKIS A VA+
Sbjct: 507 SKCAARMGQLFSTSFQTMEVQSPHVEILPDIEVTSDGVSYCFSDGIGKISQAFASQVAQK 566
Query: 242 CGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCF 301
CG + YTPSAFQIRYGGYKGV+AVD S KLSLR SMLK++S++ L+I S PC+
Sbjct: 567 CGLS-YTPSAFQIRYGGYKGVIAVDRNSFRKLSLRGSMLKFESKNRMLNITKWSDAMPCY 625
Query: 302 LNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELL 361
LNR+++ LLSTLG+ D VFE + L +LT A + LE + G+ +L +L
Sbjct: 626 LNREIVILLSTLGVEDKVFEDLLDNHLHLLGKMLTTNEAALDVLESIGGGDVKKILMRML 685
Query: 362 MCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQC 421
GY P++EP+L MMLQ+ + L +LR+R RIFI GR ++GCLDETG L GQV+ +
Sbjct: 686 HQGYAPNLEPYLSMMLQSHFENQLSDLRSRCRIFIHKGRVLVGCLDETGILNYGQVYARI 745
Query: 422 SASRRR-EFLDNSCNNRSGEL-GVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHH--MVD 477
+ ++ + S + E VV G VVV KNPCLHPGD+RVL AV +L VD
Sbjct: 746 TMTKAELQSAQQSFFQKVDETTAVVRGNVVVTKNPCLHPGDVRVLEAVYEVALEEKAWVD 805
Query: 478 CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIE 537
C++FP KG+RPH NECSG DLDGD+YF+ WD LIP PMDYT +++ ++T++
Sbjct: 806 CIIFPQKGERPHPNECSGGDLDGDLYFISWDENLIPRQTVTPMDYTGRRTRIMDHEVTLQ 865
Query: 538 DVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATI 597
+++ +F DY+++D+LG I AH+VHAD EPDKA + +CL+LA L ++AVDF+KTG AA +
Sbjct: 866 EIQRFFVDYMISDTLGAISTAHLVHADREPDKALNPKCLQLATLHSMAVDFAKTGAAAEM 925
Query: 598 PSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDM 657
P L+ +PDF+E+ DK Y S+ V+GKLYRA+ + + + + + +YD +
Sbjct: 926 PRFLKPREFPDFLERWDKPMYISEGVLGKLYRAIVNSSVRSNSDDLGSVRAIQDAYDHAL 985
Query: 658 EVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSF--DKKRDLEA 715
DG+E +I A +K Y +R+ +L++YYG + E EIL+G + + + D +R E
Sbjct: 986 LFDGYEAFIETAKNHKETYLDRMNSLLNYYGAEKEVEILTGNLRQKSVYLQRDNRRYFEL 1045
Query: 716 ---IIFAVKSLKKEARAWFNKKNESDSSHEDVYAK-ASAWYHVAYHPSYWGRYKEEGMNR 771
I+ + KSL+KE + WF + ED + K ASAWYHV YHPSY EG
Sbjct: 1046 KDRILVSAKSLQKEVKGWF-----TGCCKEDEHKKLASAWYHVTYHPSYC-----EG--S 1093
Query: 772 THFLSFPWCIHDKLIEIKRGKQR 794
+ L FPW + D L++IK R
Sbjct: 1094 ANCLGFPWVVGDILLDIKLHNTR 1116
>gi|356565022|ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
Length = 1120
Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/798 (43%), Positives = 521/798 (65%), Gaps = 29/798 (3%)
Query: 8 LETLFHLRECCYEPVRWLEEQYRKYVLSRR---FLTSPAVAL-DDGLIYVNKVLVTPSKV 63
+ L + CYEP+++++ Q +VLS + L SP L D ++ ++ L+TP+K+
Sbjct: 328 FQKLHKMSFTCYEPLKFVKTQL--HVLSNKKKGLLQSPQNRLTDSNIMSCHRALITPTKI 385
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST--NEERHTTIY 121
Y GPE+ SN VV+ + +F+R++FV+E+ +KL + +S + ++ T IY
Sbjct: 386 YCLGPELETSNHVVKHFASLASDFMRITFVEENWNKLPTNAVSTGVQKGIFSKPLKTEIY 445
Query: 122 ERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNV 181
+R+L+ LR+GIVIG K+FE LAFS SQ++ NS+W+FAS L AADIRE MG F +I++V
Sbjct: 446 KRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDNLKAADIREWMGCFNNIRSV 505
Query: 182 AKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKN 241
+K AAR+GQ F SS + V S D+E+IPD+EV DG++YCFSDGIGKIS A VA+
Sbjct: 506 SKCAARMGQLFSSSMQTFEVASEDVEMIPDIEVTSDGVSYCFSDGIGKISQCFARQVAQK 565
Query: 242 CGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCF 301
+TPSAFQIRYGG+KGV+A+D S KLSLR SMLK++S + L + S+ PCF
Sbjct: 566 LNLD-HTPSAFQIRYGGFKGVIAIDRHSFRKLSLRSSMLKFESNNRMLCVTKWSESMPCF 624
Query: 302 LNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELL 361
LNR++I+LL+TLG++D V Q++ + L +LTD A + LE ++ ++ ++L ++L
Sbjct: 625 LNREIISLLTTLGVKDEVLLAMQQDQLDLLGRMLTDSKAALDVLESLNGADSKSILVKML 684
Query: 362 MCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQC 421
+P+ EP+L MML+ + A L +L++R RIF+ GR ++GCLDETG L GQVFV+
Sbjct: 685 HEFNEPNSEPYLSMMLKAYYAYQLSDLKSRCRIFVPKGRVLVGCLDETGLLNYGQVFVRI 744
Query: 422 SASRRRE-FLDNSCNNRSGE--LGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHH--MV 476
+ ++ RE F D + G+ ++ GKVVV KNPCLHPGD+RVL A+ L +
Sbjct: 745 TVAKTRENFGDENLRKVDGDDSTRIIVGKVVVTKNPCLHPGDIRVLDAIYSKELEENGLR 804
Query: 477 DCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTI 536
DC+VFP KG RPH NECSG DLDGD++F+ WD +LIP PMDYT +++ +T+
Sbjct: 805 DCLVFPQKGHRPHPNECSGGDLDGDLFFLSWDKDLIPCQTEAPMDYTGRRPRIMDHKVTL 864
Query: 537 EDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAAT 596
E+++++F DY++ND+LG I AH+VHAD E DKA+S +CLELA+L ++AVDF+KTG A
Sbjct: 865 EEIQQFFVDYMINDTLGAISTAHLVHADREQDKAKSRKCLELAELHSMAVDFAKTGAPAA 924
Query: 597 IPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTD 656
+P L+ +PDFME+ DK Y S+ V+GKLY A+ + ++++ A ++YD
Sbjct: 925 MPRVLKPREFPDFMERVDKPMYISKGVLGKLYHAIIESQMQIRYSFVWSEKHAEEAYDRS 984
Query: 657 MEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSF--DKKR--D 712
+EV+GFE ++ A +K Y ++ +LMD+YG +TE E+L G + A D +R D
Sbjct: 985 LEVNGFEAFLETASTHKEMYAEKMSSLMDFYGAETEDEMLLGNVQNRASYLQRDNRRYGD 1044
Query: 713 L-EAIIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNR 771
+ + I+ +VK+L++EA+ WF E+ + ASAWYHV YH S+ Y +E
Sbjct: 1045 MKDRILLSVKNLQREAKEWF----ETSCQPREYKPMASAWYHVTYHRSH---YCQES--- 1094
Query: 772 THFLSFPWCIHDKLIEIK 789
FLSFPW + D L++I+
Sbjct: 1095 PCFLSFPWIVGDILLQIR 1112
>gi|326493668|dbj|BAJ85295.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1127
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/803 (44%), Positives = 506/803 (63%), Gaps = 32/803 (3%)
Query: 8 LETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSG 67
E + L CYEP+++++++ S L S + L+ ++ +TPSK+Y G
Sbjct: 331 FEKMSKLEFTCYEPLQFIQQEAHSRKRSHDALLSSKTEGEGKLMMCYRIHITPSKIYCLG 390
Query: 68 PEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST--NEERHTTIYERVL 125
PE +SN VV+ + +F R++FVDED KL+ +S ++ T +Y R+L
Sbjct: 391 PEEEVSNYVVKHHKQYASDFTRVTFVDEDWSKLFPDAISARTGRGFFSQPLKTGLYYRIL 450
Query: 126 STLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYA 185
S L+ G IG KK+E LAFS SQ++ +S+WMFAS L A DIR MG+F +I++V+K A
Sbjct: 451 SILKEGFSIGPKKYEFLAFSASQLRGSSVWMFASNDSLKAEDIRRWMGNFEEIRSVSKCA 510
Query: 186 ARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFT 245
AR+GQ F SSR+ L + D+E IPD+EV DG Y FSDGIGKIS A+ +A G
Sbjct: 511 ARMGQLFSSSRQTLDILPRDVEEIPDIEVTTDGTKYIFSDGIGKISERFAKEMACRIGLD 570
Query: 246 IYT--PSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLN 303
YT PSAFQIRYGGYKGVVAVDP S LSLR SM K++S+S +I + SK QPC++N
Sbjct: 571 -YTNPPSAFQIRYGGYKGVVAVDPDSFRNLSLRPSMKKFESKSRMFNITSTSKSQPCYMN 629
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMC 363
R++I+LLSTLGIRD +FE Q+ + +LD +LT+ A L + S E T ++L+
Sbjct: 630 REIISLLSTLGIRDEIFELMQQHDMRELDEMLTNREAALSVLGKIGSAE-TKTASKILLQ 688
Query: 364 GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA 423
GY+P +EP+LLM+L+ + + L ++RTR +I + GR ++GCLDETG LE GQV+++ +
Sbjct: 689 GYEPSLEPYLLMILKAHQDNRLTDIRTRCKIHVPKGRVLIGCLDETGELEYGQVYIRITK 748
Query: 424 SRRREFLDN-----SCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLH--HMV 476
+ + E DN S +N + VV GKV V+KNPCLHPGD+RVL AV L+ ++V
Sbjct: 749 NSK-EQKDNCQPYFSEDNGKDKTAVVVGKVAVSKNPCLHPGDIRVLEAVYDHGLYSKNLV 807
Query: 477 DCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTI 536
DCVVFP +G+RPH NECSG DLDGD+YF+ WD +LIP PMDYT A +++ +T+
Sbjct: 808 DCVVFPQRGERPHPNECSGGDLDGDLYFITWDEKLIPEKVDSPMDYTAARPRIMDHVVTL 867
Query: 537 EDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAAT 596
E++++YF DY++NDSLG I AH+VHAD P KARS +CL+LA L ++AVDF+K+G A
Sbjct: 868 EEIQKYFVDYMINDSLGAISTAHLVHADRHPMKARSPECLQLAALHSMAVDFAKSGAPAE 927
Query: 597 IPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTD 656
+P LR + YPDFME+ DK Y S +GKLYRA S + + ++D D
Sbjct: 928 MPRSLRPKEYPDFMERWDKPTYISNGPLGKLYRAAASRMQSAPAPSSSAQPIP--AFDPD 985
Query: 657 MEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIME--MAKSFDKKRDLE 714
+EV GFE+++ A + Y +L LM YYG + E EIL+G I + D KR E
Sbjct: 986 LEVPGFEEFLVSAEECYDLYAEKLSTLMSYYGTEHEDEILTGNIRNRLLYLKKDNKRYFE 1045
Query: 715 A---IIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNR 771
II +V+ L KE R WF + +++++ +ASAWYH+AYHP + + G R
Sbjct: 1046 MKDRIIDSVEGLHKEVRGWFTSRPKAEAAR-----RASAWYHMAYHPD----HHQPGKRR 1096
Query: 772 THFLSFPWCIHDKLIEIKRGKQR 794
F SFPW I D+L+ IK +R
Sbjct: 1097 --FWSFPWIICDELLTIKESSRR 1117
>gi|297809335|ref|XP_002872551.1| RNA-dependent RNA polymerase 2 [Arabidopsis lyrata subsp. lyrata]
gi|297318388|gb|EFH48810.1| RNA-dependent RNA polymerase 2 [Arabidopsis lyrata subsp. lyrata]
Length = 1134
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/803 (44%), Positives = 509/803 (63%), Gaps = 43/803 (5%)
Query: 8 LETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVAL----DDGLIYVNKVLVTPSKV 63
L+ L CY+P+ +++ Q + V ++ SPA A + ++ + VTPSK+
Sbjct: 335 LKKLHQQSSICYDPLFFVKTQMQSVV--KKMKHSPASAYKRLTEQNIMSCQRAYVTPSKI 392
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTN----EERHTT 119
Y GPE+ +N VV+++ + + +F+R++FV+ED KL + L+ ++S + T
Sbjct: 393 YLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKLPANALT--VNSKEGYFVKPFRTN 450
Query: 120 IYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIK 179
IY RVLS L GI +G K+FE LAFS SQ++ NS+WMFAS ++ A DIRE MG FR I+
Sbjct: 451 IYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMFASNEKIKAEDIREWMGCFRKIR 510
Query: 180 NVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVA 239
+++K AAR+GQ F +SR+ L+V + D+E IPD+EV DG YCFSDGIGKIS A+ VA
Sbjct: 511 SISKCAARMGQLFSASRQTLNVRAQDVEQIPDIEVTTDGADYCFSDGIGKISLAFAKQVA 570
Query: 240 KNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQP 299
+ CG + + PSAFQIRYGGYKGV+AVD +S K+SLR SMLK+ S + L++ ++ P
Sbjct: 571 QKCGLS-HVPSAFQIRYGGYKGVIAVDRSSFRKMSLRDSMLKFDSNNRMLNVTRWTESMP 629
Query: 300 CFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKE 359
CFLNR++I LLSTLGI D VFE Q ++ L +L D A L+ +S + N+L +
Sbjct: 630 CFLNREIICLLSTLGIEDAVFEAMQAVHLSMLGNMLEDRDAALNVLQKLSGENSKNLLVK 689
Query: 360 LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFV 419
+L+ GY P EP+L MML+ S L EL++R RI + GR ++GC+DE G LE GQVFV
Sbjct: 690 MLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVPKGRILIGCMDEMGILEYGQVFV 749
Query: 420 QCS------ASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLH 473
+ + SR + + + E VV GKVVV KNPCLHPGD+RVL A+ +
Sbjct: 750 RVTLTKAELKSREQSYF----HKIDEETSVVIGKVVVTKNPCLHPGDIRVLDAIYEVNFE 805
Query: 474 H--MVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLA 531
+DC++FP KG+RPH NECSG DLDGD +FV WD +LIP PPMDY + +++
Sbjct: 806 EKGFLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKLIPSQMDPPMDYAGSRPRIMD 865
Query: 532 RDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKT 591
D+T+E++ ++F DY+++D+LGVI AH+VHAD +P+KARS +CLELA L + AVDF+KT
Sbjct: 866 HDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARSQKCLELANLHSRAVDFAKT 925
Query: 592 GVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQ 651
G A +P L+ +PDF+E+ +K Y S+ V GKLYRAV+ A K +
Sbjct: 926 GAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLYRAVRS---SLAQRKPEAESDGTL 982
Query: 652 SYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCI--MEMAKSFDK 709
+YD +E GFE +I A ++ Y +L +LM YYG E EIL+G + EM + D
Sbjct: 983 TYDATLEEAGFESFIETAKAHRDMYAEKLTSLMIYYGAVNEEEILTGILKTKEMYLARDN 1042
Query: 710 KR--DL-EAIIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKE 766
+R D+ + I +VK L KEA WF+K E + + + ASAWY+V Y+PS +++
Sbjct: 1043 RRYGDMKDRITLSVKDLHKEAMGWFDKSCEDEQQKKKL---ASAWYYVTYNPS----HRD 1095
Query: 767 EGMNRTHFLSFPWCIHDKLIEIK 789
E + FLSFPW + D L++IK
Sbjct: 1096 EKLT---FLSFPWIVGDVLLDIK 1115
>gi|242073398|ref|XP_002446635.1| hypothetical protein SORBIDRAFT_06g019330 [Sorghum bicolor]
gi|241937818|gb|EES10963.1| hypothetical protein SORBIDRAFT_06g019330 [Sorghum bicolor]
Length = 1128
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/818 (43%), Positives = 500/818 (61%), Gaps = 55/818 (6%)
Query: 1 MEYIEHALETLFHLRECCYEPVRWLEEQYRKYVLSRR-FLTSPAVALDDG-LIYVNKVLV 58
++ + E + L+ CYEP++++ + S++ FL++ D G L+ ++ +
Sbjct: 324 IDTLRRIFEKMSKLKSTCYEPLQFIRHEAHSMSKSKKAFLSNKK---DGGKLMRCYRIHI 380
Query: 59 TPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST--NEER 116
TPSK+Y GPE +SN VV+ + + +F R++FVDED KL LS +
Sbjct: 381 TPSKIYCLGPEEEVSNYVVKYHSEYASDFARVTFVDEDWSKLSPNALSARTEQGFFSTPL 440
Query: 117 HTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFR 176
T +Y R+LS L+ G IG KK+E LAFS SQ++ NS+WMFAS LTA IR MG F
Sbjct: 441 KTGLYHRILSILKEGFCIGPKKYEFLAFSASQLRGNSVWMFASNNSLTAESIRRWMGHFE 500
Query: 177 DIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAE 236
DI++V+K AAR+GQ F SSR+ + S D+E+IPD+EV DG Y FSDGIGKIS A
Sbjct: 501 DIRSVSKCAARMGQLFSSSRQTFEISSYDVEVIPDIEVTSDGTKYIFSDGIGKISTRFAR 560
Query: 237 IVAKNCGF-TIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANS 295
+AK G + PSAFQIRYGGYKGV+ +DPTS LSLR SM K++S+ST L+I S
Sbjct: 561 QIAKLFGLDPAHPPSAFQIRYGGYKGVITIDPTSFFNLSLRPSMKKFESKSTMLNITNWS 620
Query: 296 KYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTN 355
K QPC++NR++I+LLSTLGI+D VFE Q++ + + D +LT+ A L + G +T
Sbjct: 621 KSQPCYVNREIISLLSTLGIKDEVFESMQQDDMHESDGMLTNKEAALSVLGKIG-GADTK 679
Query: 356 VLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESG 415
E+++ GY+P EP+LLM+L+ RA+ L ++RTR +I +Q GR ++GCLDET TL+ G
Sbjct: 680 TASEMVLQGYEPSSEPYLLMILKAHRANRLTDIRTRCKIHVQKGRVLIGCLDETCTLDYG 739
Query: 416 QVFVQCSASRRREFLDNS---CNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSL 472
QV+++ + +R+ + CN+ G+ V+ GKV V KNPCLHPGD+RVL AV P+L
Sbjct: 740 QVYIRITKNRKEQKYSEQPFFCND-DGKTAVIVGKVAVTKNPCLHPGDVRVLEAVYDPAL 798
Query: 473 --HHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVL 530
++DCVVFP +G+RPH NECSG DLDGD++F+ WD +LIP PMDYT +++
Sbjct: 799 DARGLIDCVVFPQRGERPHPNECSGGDLDGDLFFITWDDKLIPEKVDAPMDYTATRPRIM 858
Query: 531 ARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSK 590
+T+E+++++F +Y++ND+LGVI AH++HAD P KARS +CL+LA L ++AVDF+K
Sbjct: 859 DHAVTLEEIQKHFVNYMINDALGVISTAHLIHADRNPLKARSPECLQLAALHSMAVDFAK 918
Query: 591 TGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYR----------AVKDIAPPTAT 640
TG A +P LR +PDFME+ ++ Y S V+GKLYR A+ PP
Sbjct: 919 TGAPAEMPVALRPREFPDFMERWERPMYVSTSVLGKLYRAALRHEENAEALLPAGPPRCV 978
Query: 641 IKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCI 700
YD D+EV GF+ ++ A + Y +LG LM YY + E EIL+G I
Sbjct: 979 ------------YDPDLEVAGFDKFLDTAEEQYEVYAEKLGTLMTYYSAEHEDEILTGNI 1026
Query: 701 MEMAKSF--DKKRDLEA---IIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVA 755
D KR E II AV +L E R W + E D+S ASAWYHV
Sbjct: 1027 RNKLVYLRRDNKRYFEMKDRIIAAVDALHAEVRGWLRARKEDDASK-----LASAWYHVT 1081
Query: 756 YHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIKRGKQ 793
YHP G + F SFPW D L+ IK ++
Sbjct: 1082 YHPDRRGEKR--------FWSFPWVACDTLLAIKAARR 1111
>gi|15237051|ref|NP_192851.1| RNA-dependent RNA polymerase 2 [Arabidopsis thaliana]
gi|75318859|sp|O82504.1|RDR2_ARATH RecName: Full=RNA-dependent RNA polymerase 2; Short=AtRDRP2; AltName:
Full=Protein SILENCING MOVEMENT DEFICIENT 1; AltName:
Full=RNA-directed RNA polymerase 2
gi|3600048|gb|AAC35535.1| similar to hypothetical proteins in Schizosaccharomyces pombe
(GB:Z98533) and C. elegans (GB:Z48334 and Z78419)
[Arabidopsis thaliana]
gi|4850292|emb|CAB43048.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana]
gi|7267812|emb|CAB81214.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana]
gi|332657576|gb|AEE82976.1| RNA-dependent RNA polymerase 2 [Arabidopsis thaliana]
Length = 1133
Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/799 (44%), Positives = 507/799 (63%), Gaps = 35/799 (4%)
Query: 8 LETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVAL----DDGLIYVNKVLVTPSKV 63
L+ L CY+PV +++ Q + V ++ SPA A + ++ + VTPSK+
Sbjct: 334 LKKLHQQSSICYDPVFFVKTQMQSVV--KKMKHSPASAYKRLTEQNIMSCQRAYVTPSKI 391
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTN----EERHTT 119
Y GPE+ +N VV+++ + + +F+R++FV+ED KL + LS ++S + T
Sbjct: 392 YLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKLPANALS--VNSKEGYFVKPSRTN 449
Query: 120 IYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIK 179
IY RVLS L GI +G K+FE LAFS SQ++ NS+WMFAS ++ A DIRE MG FR I+
Sbjct: 450 IYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMFASNEKVKAEDIREWMGCFRKIR 509
Query: 180 NVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVA 239
+++K AAR+GQ F +SR+ L V + D+E IPD+EV DG YCFSDGIGKIS A+ VA
Sbjct: 510 SISKCAARMGQLFSASRQTLIVRAQDVEQIPDIEVTTDGADYCFSDGIGKISLAFAKQVA 569
Query: 240 KNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQP 299
+ CG + + PSAFQIRYGGYKGV+AVD +S KLSLR SMLK+ S + L++ ++ P
Sbjct: 570 QKCGLS-HVPSAFQIRYGGYKGVIAVDRSSFRKLSLRDSMLKFDSNNRMLNVTRWTESMP 628
Query: 300 CFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKE 359
CFLNR++I LLSTLGI D +FE Q ++ L +L D A L+ +S + N+L +
Sbjct: 629 CFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNMLEDRDAALNVLQKLSGENSKNLLVK 688
Query: 360 LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFV 419
+L+ GY P EP+L MML+ S L EL++R RI + GR ++GC+DE G LE GQV+V
Sbjct: 689 MLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVPKGRILIGCMDEMGILEYGQVYV 748
Query: 420 QCSASRRR-EFLDNSCNNR-SGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHH--M 475
+ + ++ + D S + E VV GKVVV KNPCLHPGD+RVL A+
Sbjct: 749 RVTLTKAELKSRDQSYFRKIDEETSVVIGKVVVTKNPCLHPGDIRVLDAIYEVHFEEKGY 808
Query: 476 VDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMT 535
+DC++FP KG+RPH NECSG DLDGD +FV WD ++IP PPMDY + +++ D+T
Sbjct: 809 LDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKIIPSEMDPPMDYAGSRPRLMDHDVT 868
Query: 536 IEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAA 595
+E++ ++F DY+++D+LGVI AH+VHAD +P+KARS +CLELA L + AVDF+KTG A
Sbjct: 869 LEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARSQKCLELANLHSRAVDFAKTGAPA 928
Query: 596 TIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDT 655
+P L+ +PDF+E+ +K Y S+ V GKLYRAVK A K + +YD
Sbjct: 929 EMPYALKPREFPDFLERFEKPTYISESVFGKLYRAVKS---SLAQRKPEAESEDTVAYDV 985
Query: 656 DMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCI--MEMAKSFDKKR-- 711
+E GFE +I A ++ Y +L +LM YYG E EIL+G + EM + D +R
Sbjct: 986 TLEEAGFESFIETAKAHRDMYGEKLTSLMIYYGAANEEEILTGILKTKEMYLARDNRRYG 1045
Query: 712 DL-EAIIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMN 770
D+ + I +VK L KEA WF K E + + + ASAWY+V Y+P+ +++E +
Sbjct: 1046 DMKDRITLSVKDLHKEAMGWFEKSCEDEQQKKKL---ASAWYYVTYNPN----HRDEKLT 1098
Query: 771 RTHFLSFPWCIHDKLIEIK 789
FLSFPW + D L++IK
Sbjct: 1099 ---FLSFPWIVGDVLLDIK 1114
>gi|308080784|ref|NP_001183867.1| uncharacterized protein LOC100502460 [Zea mays]
gi|89473792|gb|ABD72708.1| RNA-dependent RNA polymerase [Zea mays]
gi|374257933|gb|AEZ01781.1| RNA-dependent DNA polymerase [Zea mays]
gi|414586834|tpg|DAA37405.1| TPA: mediator of paramutation1 [Zea mays]
Length = 1127
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/816 (43%), Positives = 498/816 (61%), Gaps = 52/816 (6%)
Query: 1 MEYIEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTP 60
++ + E + L+ CYEP++++ + + ++ L++ + L+ ++ +TP
Sbjct: 324 IDTLRRIFEKMSKLKSTCYEPLQFIRHEAHSMNMRKKALSNKRES--GKLMRCYRIHITP 381
Query: 61 SKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST--NEERHT 118
SK+Y GPE +SN VV+ + + +F R++FVDED KL LS ++ T
Sbjct: 382 SKIYCLGPEEEVSNYVVKYHSEYASDFARVTFVDEDWSKLSPNALSARTEQGFFSKPLKT 441
Query: 119 TIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDI 178
+Y R+LS L+ G IG KK+E LAFS SQ++ NS+WMFAS LTA +IR MG F DI
Sbjct: 442 GLYHRILSILKEGFCIGPKKYEFLAFSASQLRGNSVWMFASNSSLTAENIRRWMGHFEDI 501
Query: 179 KNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIV 238
++V+K AAR+GQ F SSR+ V S D+E+IPD+EV DG Y FSDGIGKIS A V
Sbjct: 502 RSVSKCAARMGQLFSSSRQTFEVSSYDVEVIPDIEVTTDGTKYIFSDGIGKISTRFARQV 561
Query: 239 AKNCGF-TIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKY 297
AK G + PSAFQIRYGGYKGV+ +DPTS LSLR SM K++S+ST L+I SK
Sbjct: 562 AKLIGLDPAHPPSAFQIRYGGYKGVITIDPTSFFNLSLRPSMKKFESKSTMLNITNWSKS 621
Query: 298 QPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVL 357
QPC++NR++I+LLSTLGI+D VFE Q++ + + D +LT+ A L + G +T
Sbjct: 622 QPCYVNREIISLLSTLGIKDEVFESMQQDDMHESDGMLTNKEAALSVLGKIGGG-DTKTA 680
Query: 358 KELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQV 417
++L+ GY+P EP+LLM+L+ RA+ L ++RTR +I +Q GR ++GCLDET LE GQV
Sbjct: 681 ADMLLQGYEPSSEPYLLMILKAHRANRLTDIRTRCKIHVQKGRVLIGCLDETCKLEYGQV 740
Query: 418 FVQCSASRRREFLDNS---CNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSL-- 472
+++ + + + + CN+ G+ V+ GKV + KNPCLHPGD+RVL AV P L
Sbjct: 741 YIRITKNHKEQKYSEQPFFCND-DGKTAVIVGKVAITKNPCLHPGDVRVLEAVYDPGLDA 799
Query: 473 HHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLAR 532
++DCVVFP +G+RPH NECSG DLDGD++F+ WD +LIP PMDYT +++
Sbjct: 800 RGLIDCVVFPQRGERPHPNECSGGDLDGDLFFITWDDKLIPEKVDAPMDYTATRPRIMDH 859
Query: 533 DMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTG 592
+T+E+++++F Y++ND+LG I AH++HAD +P KARS +C++LA L ++AVDF+KTG
Sbjct: 860 AVTLEEIQKHFVSYMINDTLGAISTAHLIHADRDPLKARSPECVQLAALHSMAVDFAKTG 919
Query: 593 VAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYR----------AVKDIAPPTATIK 642
A +P LR +PDFME+ ++ Y S V+GKLYR A+ PP+
Sbjct: 920 APAEMPLALRPREFPDFMERWERPMYVSNGVLGKLYRAALRHEEDAEALLPAGPPSCV-- 977
Query: 643 SFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIME 702
YD D+EV GF++++ A + Y RLG LM YY + E EIL+G I
Sbjct: 978 ----------YDPDLEVAGFDEFLDAAEERYEAYAERLGALMTYYSAEREDEILTGNIRN 1027
Query: 703 MAKSF--DKKRDLEA---IIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYH 757
D KR E II AV +L E R W E D+S ASAWYHV YH
Sbjct: 1028 KLVYLRRDNKRYFEMKDRIIAAVDALHAEVRGWLRACKEDDASR-----VASAWYHVTYH 1082
Query: 758 PSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIKRGKQ 793
P G + F SFPW I D L+ IK ++
Sbjct: 1083 PDRRGEKR--------FWSFPWIICDTLLAIKAARR 1110
>gi|357164043|ref|XP_003579930.1| PREDICTED: probable RNA-dependent RNA polymerase 2-like [Brachypodium
distachyon]
Length = 1140
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/797 (43%), Positives = 504/797 (63%), Gaps = 27/797 (3%)
Query: 8 LETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSG 67
E + L CYEP++++E + + L+ L S + L+ ++ +TPSK+Y G
Sbjct: 331 FEKMSKLESTCYEPLQFIESELK---LTHNALLSSKREGEGKLMRCYRIHITPSKIYCLG 387
Query: 68 PEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST--NEERHTTIYERVL 125
PE SN VV+ + + +F+R++FVDED KL +S I ++ T +Y R+L
Sbjct: 388 PEEEASNYVVKHHSEYASDFVRVTFVDEDWSKLSVNAISARIEQGFFSQPFKTGLYYRIL 447
Query: 126 STLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYA 185
S L+ G +IG KKFE LAFS SQ+++ S+WMFAS L A IR MG F +I++V+K A
Sbjct: 448 SILKEGFIIGPKKFEFLAFSASQLREGSVWMFASNDSLNAESIRRWMGHFEEIRSVSKCA 507
Query: 186 ARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFT 245
AR+GQ F SSR+ + V D+E IPD+EV + Y FSDGIGK+S A +A G
Sbjct: 508 ARMGQLFSSSRQTVEVRPWDVEEIPDIEVTTNNTKYIFSDGIGKMSVRFAREIAYRIGLD 567
Query: 246 -IYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLNR 304
PSAFQIR+GGYKGV+AVDP+S LSLR SM K++S+ L+I + SK QPC++NR
Sbjct: 568 HTNPPSAFQIRFGGYKGVIAVDPSSFRNLSLRPSMRKFESDCRMLNITSWSKSQPCYVNR 627
Query: 305 QLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCG 364
++I+LLSTLGIRD VFE Q++ + +LD +LT+ A L + S E T ++L+ G
Sbjct: 628 EIISLLSTLGIRDEVFELMQQDDMRELDEMLTNKEVALSVLGKIGSAE-TKTAADMLLQG 686
Query: 365 YKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSAS 424
Y+P EP+LLM+L+ + + L ++R++ +I + GR ++GCLDETG L+ GQV+++ + +
Sbjct: 687 YEPISEPYLLMILKAHQDNRLTDIRSKFKIHVPKGRVLLGCLDETGKLKYGQVYIRITKN 746
Query: 425 RR--REFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLH--HMVDCVV 480
+ +E + G+ + GKV V+KNPCLHPGD+RVL AV P LH +VDCVV
Sbjct: 747 NKEQKENEQPYFSEDDGKTVTLVGKVAVSKNPCLHPGDVRVLEAVYDPGLHAKKLVDCVV 806
Query: 481 FPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVE 540
FP +G+RPH NECSG DLDGD+YFV WD +LIP PMDYT A +++ +T+E+++
Sbjct: 807 FPQRGERPHPNECSGGDLDGDLYFVTWDDKLIPEKADAPMDYTGARPRIMDHVVTLEEIQ 866
Query: 541 EYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSG 600
++ +Y+++DSLG I NAH++HAD +P KARS +CL+LA L ++AVDF+KTG A +P
Sbjct: 867 QHVVNYMLSDSLGAISNAHLIHADRDPMKARSPECLQLAALHSMAVDFAKTGAPAELPRS 926
Query: 601 LRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVD 660
LR +PDFME+ DK Y S V+GKLYRA + + S + + +YD ++ V
Sbjct: 927 LRPREFPDFMERWDKPMYISNGVLGKLYRAAVSRMESSHALASQVQ--SSPTYDRELAVP 984
Query: 661 GFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCI----MEMAKSFDKKRDLEAI 716
GFE+++ DA K+ Y +L LM+YYG + E EIL+G I + + K + D++
Sbjct: 985 GFEEFLEDAEKHYDLYVEKLTTLMNYYGAEHEDEILTGNIRNRLLYLRKDRKRYSDMKDR 1044
Query: 717 IF-AVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFL 775
IF +V +L +E R WF +++ E+ ASAWY VAYHP + R E + F
Sbjct: 1045 IFDSVNALHEEVRGWFKNCLKAE---EEASRVASAWYRVAYHPDH--RRPE----KKQFW 1095
Query: 776 SFPWCIHDKLIEIKRGK 792
SFPW I DKL+ IK K
Sbjct: 1096 SFPWIICDKLLAIKATK 1112
>gi|125548642|gb|EAY94464.1| hypothetical protein OsI_16234 [Oryza sativa Indica Group]
Length = 1136
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 349/805 (43%), Positives = 489/805 (60%), Gaps = 37/805 (4%)
Query: 8 LETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDG-------LIYVNKVLVTP 60
E + L CYEP+++++++ S L S ++G L+ +V +TP
Sbjct: 329 FEKMHKLESTCYEPLQFIQQEAYSMKRSHNVLLS-----NEGEGEGERKLMKCYRVNITP 383
Query: 61 SKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST--NEERHT 118
SK++ GPE ++N VV+ + +F+R++FVDED KL S +S I ++ T
Sbjct: 384 SKIFCLGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKLSSNAISARIEQGFFSKPFKT 443
Query: 119 TIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDI 178
+Y R+LS L+ G IG K FE LAFS SQ++ NS+WMFAS L A IR MG F +I
Sbjct: 444 GLYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFASNASLNAGGIRRWMGHFENI 503
Query: 179 KNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIV 238
++V+K AAR+GQ F SSR+ V D+E+IPD+E+ DG Y FSDGIGKIS A+ V
Sbjct: 504 RSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITTDGSKYIFSDGIGKISLRFAKRV 563
Query: 239 AKNCGF-TIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKY 297
A + G PSAFQIRYGGYKGV+A+DP SS LSLR SM K++SES L+I + SK
Sbjct: 564 AHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDLSLRPSMKKFESESRMLNITSWSKS 623
Query: 298 QPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVL 357
QPC++NR++I+LLSTLGIRD +F Q++ + + + +LT+ A L + E +
Sbjct: 624 QPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNKEVALSVLGKLGGSETKTAV 683
Query: 358 KELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQV 417
K +L+ GY+P EP+L M+L+ + + L ++RTR +I + GR ++GCLDETG LE GQV
Sbjct: 684 K-MLLQGYEPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKGRVLIGCLDETGVLEYGQV 742
Query: 418 FVQCSASRRREFLDNSCN--NRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHM 475
+++ + + + + N N G+ V GKV + KNPCLHPGD+RVL A+ P L M
Sbjct: 743 YIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAITKNPCLHPGDIRVLEAIYDPDLVGM 802
Query: 476 VDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMT 535
VDC+VFP +G+RPH NECSG DLDGD+YF+ WD +LIP PMDYT +++ +T
Sbjct: 803 VDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEKVDTPMDYTATRPRIMDHVVT 862
Query: 536 IEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAA 595
+E+++++F DY++NDSLG I AH++HAD P KARS +CL+LA L ++AVDF+KTG A
Sbjct: 863 LEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECLQLATLHSMAVDFAKTGAPA 922
Query: 596 TIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQS--Y 653
+P LR YPDFME+ +K Y S V+GKLYR+ + + + A S Y
Sbjct: 923 EMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHMEKSGDSGALSSSSAQPSPTY 982
Query: 654 DTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIME--MAKSFDKKR 711
D D+EV G ++++ A +Y Y+ +L LM+YY + E EIL+G I + D KR
Sbjct: 983 DPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAEHEDEILTGNIRNKMLYLKRDNKR 1042
Query: 712 DLEA---IIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEG 768
E I+ AV +L +EAR W S ED ASAWY V YHP + G
Sbjct: 1043 YFEMKDRIVAAVDALHREARGWL----LSSRKEEDASRMASAWYRVTYHPD-----RRRG 1093
Query: 769 MNRTHFLSFPWCIHDKLIEIKRGKQ 793
F SFPW D L+ IK Q
Sbjct: 1094 ---KRFWSFPWIACDNLLAIKASSQ 1115
>gi|75327281|sp|Q7XM31.1|RDR2_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 2; Short=OsRDR2
gi|32492169|emb|CAE04828.1| OSJNBb0048E02.13 [Oryza sativa Japonica Group]
Length = 1136
Score = 635 bits (1638), Expect = e-179, Method: Compositional matrix adjust.
Identities = 348/805 (43%), Positives = 488/805 (60%), Gaps = 37/805 (4%)
Query: 8 LETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDG-------LIYVNKVLVTP 60
E + L CY P+++++++ S L S ++G L+ +V +TP
Sbjct: 329 FEKMHKLESTCYGPLQFIQQEAYSMKRSHNVLLS-----NEGEGEGERKLMKCYRVNITP 383
Query: 61 SKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST--NEERHT 118
SK++ GPE ++N VV+ + +F+R++FVDED KL S +S I ++ T
Sbjct: 384 SKIFCFGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKLSSNAISARIEQGFFSKPFKT 443
Query: 119 TIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDI 178
+Y R+LS L+ G IG K FE LAFS SQ++ NS+WMFAS L A IR MG F +I
Sbjct: 444 GLYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFASNASLNAGGIRRWMGHFENI 503
Query: 179 KNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIV 238
++V+K AAR+GQ F SSR+ V D+E+IPD+E+ DG Y FSDGIGKIS A+ V
Sbjct: 504 RSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITTDGSKYIFSDGIGKISLRFAKRV 563
Query: 239 AKNCGF-TIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKY 297
A + G PSAFQIRYGGYKGV+A+DP SS LSLR SM K++SES L+I + SK
Sbjct: 564 AHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDLSLRPSMKKFESESRMLNITSWSKS 623
Query: 298 QPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVL 357
QPC++NR++I+LLSTLGIRD +F Q++ + + + +LT+ A L + E +
Sbjct: 624 QPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNKEVALSVLGKLGGSETKTAV 683
Query: 358 KELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQV 417
K +L+ GY+P EP+L M+L+ + + L ++RTR +I + GR ++GCLDETG LE GQV
Sbjct: 684 K-MLLQGYEPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKGRVLIGCLDETGVLEYGQV 742
Query: 418 FVQCSASRRREFLDNSCN--NRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHM 475
+++ + + + + N N G+ V GKV + KNPCLHPGD+RVL A+ P L M
Sbjct: 743 YIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAITKNPCLHPGDIRVLEAIYDPDLVGM 802
Query: 476 VDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMT 535
VDC+VFP +G+RPH NECSG DLDGD+YF+ WD +LIP PMDYT +++ +T
Sbjct: 803 VDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEKVDTPMDYTATRPRIMDHVVT 862
Query: 536 IEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAA 595
+E+++++F DY++NDSLG I AH++HAD P KARS +CL+LA L ++AVDF+KTG A
Sbjct: 863 LEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECLQLATLHSMAVDFAKTGAPA 922
Query: 596 TIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQS--Y 653
+P LR YPDFME+ +K Y S V+GKLYR+ + + + A S Y
Sbjct: 923 EMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHMEKSGDSGALSSSSAQPSPTY 982
Query: 654 DTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIME--MAKSFDKKR 711
D D+EV G ++++ A +Y Y+ +L LM+YY + E EIL+G I + D KR
Sbjct: 983 DPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAELEDEILTGNIRNKMLYLKRDNKR 1042
Query: 712 DLEA---IIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEG 768
E I+ AV +L +EAR W S ED ASAWY V YHP + G
Sbjct: 1043 YFEMKDRIVAAVDALHREARGWL----LSSRKEEDASRMASAWYRVTYHPD-----RRRG 1093
Query: 769 MNRTHFLSFPWCIHDKLIEIKRGKQ 793
F SFPW D L+ IK Q
Sbjct: 1094 ---KRFWSFPWIACDNLLAIKASSQ 1115
>gi|357117510|ref|XP_003560510.1| PREDICTED: probable RNA-dependent RNA polymerase 2-like [Brachypodium
distachyon]
Length = 1138
Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust.
Identities = 343/798 (42%), Positives = 503/798 (63%), Gaps = 29/798 (3%)
Query: 8 LETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSG 67
E + L CYEP++++E + + L++ L S + L+ ++ +TPSK+Y G
Sbjct: 328 FEKMSKLESTCYEPLQFIESELK---LTQNALLSSKREGEGKLMRCYRIHITPSKIYCLG 384
Query: 68 PEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST--NEERHTTIYERVL 125
P+ SN VV+ + + +F+R++FVDED KL +S I ++ T +Y R+L
Sbjct: 385 PQEEASNYVVKHHSEYASDFVRVTFVDEDWSKLSVNAISARIEQGFFSQPFKTGLYYRIL 444
Query: 126 STLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYA 185
S L+ G +IG KKF+ LAFS SQ+++ S+WMFAS L A IR MG F +I +V+K A
Sbjct: 445 SILKEGFIIGPKKFKFLAFSASQLREGSVWMFASNDSLNAEGIRRWMGHFEEICSVSKCA 504
Query: 186 ARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFT 245
AR+GQ F SSR+ + V D+E IPD+EV + + Y FSDGIGK+S A+ +A G
Sbjct: 505 ARMGQLFSSSRQTVEVRPKDVEEIPDIEVITNNMKYIFSDGIGKMSVRFAKEIAYRIGLD 564
Query: 246 IYTP-SAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLNR 304
P SAF+IR+GGYKGV+AVDP+S LSLR SM K++S+ L+I + SK QPC +NR
Sbjct: 565 HKNPPSAFEIRFGGYKGVIAVDPSSYRNLSLRPSMRKFESDCRMLNITSWSKSQPCHVNR 624
Query: 305 QLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCG 364
++I+LLSTLGIRD VFE Q++ + +LD +LT+ A L + S E T ++L+ G
Sbjct: 625 EIISLLSTLGIRDEVFELMQQDDMCELDEMLTNKEIALSVLGKIGSAE-TKTAADMLLQG 683
Query: 365 YKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSAS 424
YKP EP+LLM+L+ + + L ++R++ +I + GR ++GCLDETG L+ GQV+++ + +
Sbjct: 684 YKPISEPYLLMILKAHQDNRLTDIRSKFKIHVPKGRVLLGCLDETGILKYGQVYIRITKN 743
Query: 425 RRREFLDNS---CNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLH--HMVDCV 479
+ + + C + G+ + GKV V+KNPCLHPGD+RVL AV LH +VDCV
Sbjct: 744 NKEQKENEQPYFCKD-DGKTVTLVGKVAVSKNPCLHPGDVRVLEAVCDLELHATKLVDCV 802
Query: 480 VFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDV 539
VFP +G+RPH NECSG DLDGD+YFV WD LIP PMDYT A +++ +T+E++
Sbjct: 803 VFPQRGERPHPNECSGGDLDGDLYFVTWDDRLIPEKADTPMDYTAARPRIMDHVVTLEEI 862
Query: 540 EEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPS 599
+++ +Y+++DSLG I NAH++HAD +P KARS +CL LA L ++AVDF+KTG A +P
Sbjct: 863 QQHVVNYMLSDSLGAISNAHLIHADRDPMKARSPECLRLAALHSMAVDFAKTGAPAELPR 922
Query: 600 GLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEV 659
LR +PDFME+ DK Y S V+GKLYRA + + S + + +YD ++EV
Sbjct: 923 SLRPREFPDFMERWDKPMYISTGVLGKLYRAAVSRMESSHALASQVQ--SSPTYDRELEV 980
Query: 660 DGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCI----MEMAKSFDKKRDL-E 714
GFE+++ DA K+ Y +L LM+Y G + E E+L+G I + + K + D+ +
Sbjct: 981 PGFEEFLEDADKHYDLYVEKLTTLMNYDGAEHEDEMLTGNIRNRLLYLRKDRKRYSDMKD 1040
Query: 715 AIIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHF 774
I+ +V +L +E R WF+ +++ E+ ASAWY V YHP + R E + F
Sbjct: 1041 RIVDSVNALHEEVRGWFHSCLKAE---EEASRVASAWYRVTYHPDH--RRPE----KKQF 1091
Query: 775 LSFPWCIHDKLIEIKRGK 792
SFPW I DKL+ IK K
Sbjct: 1092 WSFPWIICDKLLAIKESK 1109
>gi|119370382|gb|ABL68088.1| putative RNA-directed RNA polymerase 1 [Nicotiana attenuata]
Length = 1044
Score = 608 bits (1569), Expect = e-171, Method: Compositional matrix adjust.
Identities = 309/476 (64%), Positives = 369/476 (77%), Gaps = 15/476 (3%)
Query: 4 IEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKV 63
IEHALE L++L+ECCY+PVRWL EQY +Y+ R+ SP++ LDDGL+YV +VLVTP KV
Sbjct: 307 IEHALEKLYYLKECCYDPVRWLTEQYDEYLKHRQLPKSPSITLDDGLVYVRRVLVTPCKV 366
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYER 123
YF GPE+++SNRV+R+Y ++IDNFLR+SFVDE+ +K++ST L P S+ N R T IY R
Sbjct: 367 YFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIHSTDLLPRASTGNGIR-TDIYLR 425
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
+LSTLRNG VIGDKKFE LAFS+SQ++DNS+WMFASRP LTA DIR MGDFR I+NVAK
Sbjct: 426 ILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFRQIRNVAK 485
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCG 243
YAARLGQSFGSSRE L V ++E+IPDV G Y FSDGIGKISA+ A++ +
Sbjct: 486 YAARLGQSFGSSRETLSVSRHEVEVIPDVVCSLHGTNYIFSDGIGKISADFAKM--RPSV 543
Query: 244 FTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLN 303
++I+ F IRYGGYKGVVAVDP SS KLSLR SMLKY+S + LD+L SKYQPC+LN
Sbjct: 544 YSIF----FSIRYGGYKGVVAVDPYSSMKLSLRNSMLKYESNNIKLDVLGWSKYQPCYLN 599
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMC 363
RQL+TLLSTLG++D VFE+KQ E V QLDAIL D LKA EALELMS GENTN+LKE+L C
Sbjct: 600 RQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDSLKAQEALELMSPGENTNILKEMLNC 659
Query: 364 GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA 423
GY PD EPFL MMLQTFRAS LL+LRTR+RIFI A + LE GQVFVQ +
Sbjct: 660 GYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIAKWDAWL----NPEPLEYGQVFVQFTG 715
Query: 424 SRRREFLDNSCN-NRSGELG---VVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHM 475
+ RR+F + S N SG +EG VVVAKNPCLHPGD+RVLRAVDVP+LHHM
Sbjct: 716 TGRRQFYEESHPFNDSGSTNCNFTLEGNVVVAKNPCLHPGDIRVLRAVDVPALHHM 771
Score = 325 bits (833), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 157/257 (61%), Positives = 195/257 (75%), Gaps = 5/257 (1%)
Query: 538 DVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATI 597
+V EYF +YIVN SLG+I NAHVV AD EP A S C +LA+L +IAV F KTGV A I
Sbjct: 772 EVGEYFTNYIVNGSLGIIANAHVVFADREPAMAMSAPCKQLAQLFSIAVAFPKTGVPAGI 831
Query: 598 PSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDM 657
PS LR YPDFMEK DK Y S++VIGKL+R VKD P +I +FT +VA +SY DM
Sbjct: 832 PSQLRPTDYPDFMEKPDKPTYHSEKVIGKLFRKVKDKTPQATSIATFTMDVARKSYAGDM 891
Query: 658 EVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAII 717
V+GFEDY +AF YK+EYDN+LGNLMDYYGIKTEAEILSG +M+ +K+FD+++D EAI
Sbjct: 892 IVNGFEDYTDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGVMKASKTFDRRKDAEAIG 951
Query: 718 FAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSF 777
AV+SL+KEAR WF K+++ D D+ AKASAWYHV YH +YWG Y EG+ R HF+SF
Sbjct: 952 VAVRSLRKEARTWFKKRSDID----DMLAKASAWYHVTYHHTYWGLY-NEGLRRDHFISF 1006
Query: 778 PWCIHDKLIEIKRGKQR 794
PWC++D+LI+IK+ K R
Sbjct: 1007 PWCVYDQLIQIKKAKAR 1023
>gi|224141893|ref|XP_002324295.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222865729|gb|EEF02860.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1200
Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust.
Identities = 334/777 (42%), Positives = 471/777 (60%), Gaps = 52/777 (6%)
Query: 50 LIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVL---- 105
++ + ++++TP+K Y PE+ LSNRV+R Y D D FLR++F+DE L ++ S VL
Sbjct: 413 VVEIRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYV 472
Query: 106 SPL---ISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPE 162
+P+ I+S + + T I++RV S L G + +++ LAFS +Q++D S W F+
Sbjct: 473 APIVRDITSNSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERN 532
Query: 163 LTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI-IPDVEVEDDGITY 221
++ D++ MG F + +N+AK AAR+GQ F S+ + V ++ +PD+E Y
Sbjct: 533 ISVLDVKSWMGKFTN-RNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNG----Y 587
Query: 222 CFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSS--TKLSLRKSM 279
FSDGIG I+ +LA VA+ I P A+QIRY G KGVVA P +LSLR SM
Sbjct: 588 VFSDGIGIITPDLAREVAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSM 647
Query: 280 LKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPL 339
K++S T+L+I + +++QP FLNRQ+ITLLSTL + D VF K Q V++L+ + +
Sbjct: 648 NKFQSNHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSD 707
Query: 340 KAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNG 399
A + L S + NV +L G+KPD EP L ML RA+ L +LR +TRIF+ +G
Sbjct: 708 VAFDVLT-ASCADQGNVAAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSG 766
Query: 400 RAMMGCLDETGTLESGQVFVQCS-ASRRREFLDNSCNNRSGE--LGVVEGKVVVAKNPCL 456
R +MGCLDE G LE GQ F+Q S +S + F+ + E L V++G VV+AKNPCL
Sbjct: 767 RWLMGCLDELGMLEQGQCFIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCL 826
Query: 457 HPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ 516
HPGD+RVL AVDVP LHH+ DC+VFP KG+RPHTNE SGSDLDGD+YFV WD LIPP +
Sbjct: 827 HPGDVRVLEAVDVPGLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSK 886
Query: 517 --FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQ 574
+ PM Y A K+LAR + +D+ E+FA +VND+LG ICNAHVVHADL A
Sbjct: 887 RSWIPMQYDAAEAKLLARPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKN 946
Query: 575 CLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDI 634
CL LA+L+ AVDF KTG ++P L+ ++YPDFM K++ Y+S++++G+LYR +KD
Sbjct: 947 CLTLAELAATAVDFPKTGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKD- 1005
Query: 635 APPTATIKSFTKEVAMQS----------YDTDMEVDGFEDYITDAFKYKTEYDNRLGNLM 684
++ ++VA S YD+D+EV G DYI+DA+ K YD +L L+
Sbjct: 1006 --------AYDEDVAASSELNLVPGDIPYDSDLEVVGASDYISDAWDQKCSYDGQLNGLL 1057
Query: 685 DYYGIKTEAEILSGCIMEMAKSFDKKRD--LEAIIFAVKSLKKEARAWFNK-----KNES 737
Y +K E E+++G I M K +K+ + + + SLKKE R F K +
Sbjct: 1058 SQYKVKREEEVVTGHIWSMPKYSSRKQGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLE 1117
Query: 738 DSSHEDVY-AKASAWYHVAYHPSYWGRYKE----EGMNRTHFLSFPWCIHDKLIEIK 789
D +Y KASAWY V YHP + + E +G + LSF W D L IK
Sbjct: 1118 DGEKNKLYEQKASAWYQVVYHPHWVKKSLELQDPDGAGTSVMLSFAWIAADYLARIK 1174
>gi|357466249|ref|XP_003603409.1| Rna-dependent RNA polymerase [Medicago truncatula]
gi|355492457|gb|AES73660.1| Rna-dependent RNA polymerase [Medicago truncatula]
Length = 1188
Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust.
Identities = 337/810 (41%), Positives = 478/810 (59%), Gaps = 59/810 (7%)
Query: 23 RWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPD 82
+WL + Y +S++ D ++ V +++VTP+K Y PE+ LSNRV+R + +
Sbjct: 379 KWLLRNPKFYQISKQ---------SDDVMEVRRLVVTPTKAYCISPEVELSNRVLRRFRE 429
Query: 83 EIDNFLRLSFVDEDLDKLYSTVL----SPL---ISSTNEERHTTIYERVLSTLRNGIVIG 135
D FLR++F+DE L + L +P+ I+S + ++ T IY+RV + L +G
Sbjct: 430 VSDRFLRVTFMDEGQQTLNNYALNYYVAPIVKEITSNSFQQKTRIYKRVKTILDDGFYFC 489
Query: 136 DKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSS 195
+K+ LAFS++Q++D S W FA ++T DIR MG F KNVAK AAR+GQ F S+
Sbjct: 490 GRKYSFLAFSSNQLRDRSAWFFAEDKDITCDDIRNWMGRFNQ-KNVAKCAARMGQCFSST 548
Query: 196 REALHVDSSDIE-IIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQI 254
++ V ++++ ++PDVE + Y FSDGIG I+ +LA VA+ PSA+QI
Sbjct: 549 YASVEVPANEVNSMLPDVERNN----YVFSDGIGIITTDLAVEVAEKLKLD-KAPSAYQI 603
Query: 255 RYGGYKGVVAVDPTSS--TKLSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLST 312
RY G+KGVVA P KLSLR SM K++S T+L+I A +++QP FLNRQ+ITLLS
Sbjct: 604 RYAGFKGVVACWPAKGDGIKLSLRPSMNKFQSTHTTLEICAWTRFQPGFLNRQIITLLSA 663
Query: 313 LGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPF 372
L + D +F K Q ++ L+ +L D A++ L S E+ N +L CG+ P EP
Sbjct: 664 LDVPDEIFWKMQEGMISSLNQMLVDRDVAYDVLT-KSCAEHGNAAAIMLSCGFSPKTEPH 722
Query: 373 LLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDN 432
L ML + RA+ L LR ++RIF+ +GR +MG LDE G LE GQ FVQ S L+N
Sbjct: 723 LRGMLNSIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPS----LEN 778
Query: 433 SCNNRSGE-------LGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKG 485
C ++ G + VV+G VV+AKNPCLHPGD+RVL AVDVP LHH+ DCVVFP KG
Sbjct: 779 -CFSKHGSRFSETKTVHVVKGIVVIAKNPCLHPGDVRVLEAVDVPDLHHLYDCVVFPQKG 837
Query: 486 KRPHTNECSGSDLDGDVYFVCWDHELIPPLQ--FPPMDYTPAPEKVLARDMTIEDVEEYF 543
+RPHT+E SGSDLDGD+YFV WD LIPP + +PPM+Y ++ R +T++D+ ++F
Sbjct: 838 ERPHTDEASGSDLDGDLYFVTWDGNLIPPSKRSWPPMEYAAQESRLQTRQVTVQDIIDFF 897
Query: 544 ADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRV 603
+VN+ LG ICNAHVVHAD A C+ LA+L+ AVDF KTG T+PS L+
Sbjct: 898 VRNMVNEQLGSICNAHVVHADSSDYGALDENCVHLAELAATAVDFPKTGKLVTMPSNLKP 957
Query: 604 EIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFE 663
++YPDFM K+ Y+S++++G+LYR +KD F + YDTD+EV G
Sbjct: 958 KLYPDFMGKEHHQSYKSKKILGRLYRRIKDAYDKDIDAPEFNCVSSDILYDTDLEVPGSS 1017
Query: 664 DYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRD--LEAIIFAVK 721
++I DA++ + YD +L L+ Y +KTE E+++G I M K +K+ E + +
Sbjct: 1018 EFIADAWEQRCSYDGQLSGLLGQYKVKTEEEVVTGQIWSMPKYNSRKQGELKERLKHSYS 1077
Query: 722 SLKKEARAWFNKKNE-----SDSSHEDVY-AKASAWYHVAYHPSYWGR-----------Y 764
+LKKE R F K SD +Y KASAWY V YHP + +
Sbjct: 1078 ALKKEFRQIFEKLKSDVGELSDKEKNLLYEQKASAWYQVTYHPKWVKKSLDLQLKSSDNQ 1137
Query: 765 KEEGMNRTHFLSFPWCIHDKLIEIKRGKQR 794
+ + LSFPW D L K +R
Sbjct: 1138 SADSLGNMVMLSFPWIAVDYLACTKTRHRR 1167
>gi|115448543|ref|NP_001048051.1| Os02g0736200 [Oryza sativa Japonica Group]
gi|113537582|dbj|BAF09965.1| Os02g0736200, partial [Oryza sativa Japonica Group]
Length = 476
Score = 583 bits (1503), Expect = e-163, Method: Compositional matrix adjust.
Identities = 287/454 (63%), Positives = 349/454 (76%), Gaps = 14/454 (3%)
Query: 61 SKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTI 120
S VYF GPEI++SNRVVR++ +I+NFLR+SFVDED +KL +T LSP +S ++ T +
Sbjct: 34 STVYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTAL 93
Query: 121 YERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKN 180
Y+RVLS L +GI IG K FE LAFS+SQ++DNS WMFASR L A+DIR MGDFR+I+N
Sbjct: 94 YKRVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRN 153
Query: 181 VAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAK 240
VAKYAARLGQSF SS E L V ++E I D++ +G + FSDGIGKIS+ A VA
Sbjct: 154 VAKYAARLGQSFSSSTETLKVQKYEVEEISDIK---NGTQHVFSDGIGKISSAFANEVAM 210
Query: 241 NCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPC 300
C + PSAFQIRYGGYKGVVAVDPTS KLSLRKSMLK++S++ ++D+LA SKYQP
Sbjct: 211 KCNLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPG 270
Query: 301 FLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKEL 360
FLNRQLITLLSTLG+RD VFE+KQ E V QL+ ++TDP A EA+ELM GE TN +KEL
Sbjct: 271 FLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKEL 330
Query: 361 LMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQ 420
L+CGY+PD EP+L M+LQTFRAS LLEL+T++RI I GRAMMGCLDET TL+ GQVF++
Sbjct: 331 LLCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIR 390
Query: 421 CSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVV 480
++ DN + V GKVV+AKNPCLHPGD+R+L AVDVP LHHM +CVV
Sbjct: 391 ATSGVN----DN-------DRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVV 439
Query: 481 FPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP 514
FP +G RPH NECSGSDLDGD+YFV WD LIPP
Sbjct: 440 FPQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPP 473
>gi|295885030|gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
Length = 1196
Score = 579 bits (1492), Expect = e-162, Method: Compositional matrix adjust.
Identities = 341/826 (41%), Positives = 488/826 (59%), Gaps = 54/826 (6%)
Query: 1 MEYIEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTP 60
ME AL+ ++ R Y+ L++ + + + + SP LDD ++ + ++++TP
Sbjct: 362 MEVNVAALKHIYSYRHPVYDAYERLKDVHDWLLKNPKLFKSPP-QLDD-IVEIRRLVITP 419
Query: 61 SKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPL-------ISSTN 113
+K Y PE+ LSNRV+R Y D D FLR++F+DE + + + VL+ ++ST+
Sbjct: 420 TKAYCLLPEVELSNRVLRKYKDVADRFLRVTFMDEGMQIMNANVLTYYNAAIVRDVTSTS 479
Query: 114 EERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMG 173
+ T +++RV S L +G + +K+ LAFS +Q++D + W FA ++ I MG
Sbjct: 480 FSQKTGVFKRVKSILTDGFYLCGRKYSFLAFSANQLRDRAAWFFAEDGKINVLQIIGWMG 539
Query: 174 DFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI-IPDVEVEDDGITYCFSDGIGKISA 232
F + +N+AK AAR+GQ F S+ + V S + + +PD++ Y FSDGIGKI+
Sbjct: 540 KFTN-RNIAKCAARMGQCFSSTYATVEVPSGQVNMHLPDIKRNG----YDFSDGIGKITP 594
Query: 233 ELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSS--TKLSLRKSMLKYKSESTSLD 290
+LA VA+ + P A+QIRY G KGVVA P +LSLR SM+K+ S T+L+
Sbjct: 595 DLAMEVAQKLKLDLNPPCAYQIRYAGCKGVVACWPEEGDRIRLSLRSSMIKFFSHHTTLE 654
Query: 291 ILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSS 350
I + +++QP FLNRQ+ITLLSTLG+ D VF Q V++LD +L D A E + + S
Sbjct: 655 ICSWTRFQPGFLNRQIITLLSTLGVPDEVFWGMQNSMVSKLDKVLVDTDAAFEVV-ISSC 713
Query: 351 GENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETG 410
GE + +L G+KP EP L ML RAS L LR ++RIFI +GR +MG LDE G
Sbjct: 714 GEQGHTPAIMLSAGFKPQTEPHLRGMLTCVRASQLWGLREKSRIFIHSGRWLMGVLDELG 773
Query: 411 TLESGQVFVQCS-ASRRREFLDNSCN--NRSGELGVVEGKVVVAKNPCLHPGDMRVLRAV 467
LE GQ F+Q S S + FL + V++G VV+AKNPCLHPGD+R+L AV
Sbjct: 774 VLEQGQCFIQVSNPSLQNCFLKHGSRFAETKKNFEVIKGLVVIAKNPCLHPGDIRILEAV 833
Query: 468 DVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ--FPPMDYTPA 525
D P LHH+ DC+VFP KG+RPHTNE SGSDLDGD+YFV W+ LIPP + PM Y
Sbjct: 834 DAPGLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWEEALIPPSKKSSQPMQYDLD 893
Query: 526 PEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIA 585
+ L R +T +D+ E+F+ +VN+ LG ICNAHVVH+DL A +C+ LA+L+ IA
Sbjct: 894 APRELNRSVTHKDIIEFFSKNMVNEHLGSICNAHVVHSDLSEHGASDEKCIHLAELAAIA 953
Query: 586 VDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFT 645
VDF KTG ++P+ L+ ++YPDFM K++ Y+S +++G+LYR +KD ++
Sbjct: 954 VDFPKTGKIVSMPAQLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKD---------AYD 1004
Query: 646 KEVAMQS----------YDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEI 695
K+V+ S YD D+E+ G DYITDA+ K YD +L L+ Y +K E E+
Sbjct: 1005 KDVSESSELNFGASDINYDADLEITGSADYITDAWAKKCSYDGQLIGLLKQYKVKREEEV 1064
Query: 696 LSGCIMEMAKSFDKK-RDL-EAIIFAVKSLKKEARAWF-NKKNESDSSHED----VYA-K 747
++G I M K KK DL E + + SL+KE R F N +E + +ED +Y K
Sbjct: 1065 VTGQIWSMPKYASKKLGDLKEKLGHSYGSLRKEFRQLFENMDSEFEQLNEDEKNKLYERK 1124
Query: 748 ASAWYHVAYHPSYWGR----YKEEGMNRTHFLSFPWCIHDKLIEIK 789
ASAWY V YHP + + K +G LSF W D L IK
Sbjct: 1125 ASAWYQVTYHPEWVQKKLEFQKPDGDEGVVMLSFAWIAADYLARIK 1170
>gi|297748117|gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 339/798 (42%), Positives = 477/798 (59%), Gaps = 45/798 (5%)
Query: 30 RKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLR 89
+K++L L LDD ++ V ++++TP+K Y P + LSNRV+R+Y D FLR
Sbjct: 391 QKWLLKNPKLLDRTGELDD-IVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLR 449
Query: 90 LSFVDEDLDKL-------YSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETL 142
++F+DE + L Y+ + I+S + + T I++RV S L G + +K+ L
Sbjct: 450 VTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSKGFHLCGRKYSFL 509
Query: 143 AFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVD 202
AFS +Q++D S W FA P++ I MG F + +NVAK AAR+GQ F S+ + V
Sbjct: 510 AFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSN-RNVAKCAARMGQCFSSTYATVEVP 568
Query: 203 SSDIEI-IPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKG 261
SS++ +PD+E Y FSDGIG ISA+LA VA+ ++ PSA+QIRY G KG
Sbjct: 569 SSEVNSELPDIERNG----YVFSDGIGMISADLAIEVAEKLHLSVNPPSAYQIRYAGCKG 624
Query: 262 VVAVDPTSS--TKLSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHV 319
VVA PT + +LSLR SM K+ S T L+I + +++QP FLNRQ++TLLS+L ++D +
Sbjct: 625 VVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGI 684
Query: 320 FEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQT 379
F + Q+E ++ LD +L D A + + S E N +L G+KP EP L ML +
Sbjct: 685 FWEMQKEMISGLDKMLVDSDVAFDVIT-ASCAEAGNTAALMLSAGFKPQSEPHLRGMLSS 743
Query: 380 FRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSG 439
RAS L +LR + RIF+ +GR +MGCLDE G LE GQ F+Q S+ L+N C + G
Sbjct: 744 IRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPS----LEN-CFVKHG 798
Query: 440 --------ELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTN 491
L VV+G VV+AKNPCLHPGD+R+L AVDVPSL H+ DC+VFP KG RPH+N
Sbjct: 799 PKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSN 858
Query: 492 ECSGSDLDGDVYFVCWDHELIPPLQ--FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVN 549
E SGSDLDGD+YFV WD LIPP + + PM+Y PA K L R + D+ ++F+ +V
Sbjct: 859 EASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQ 918
Query: 550 DSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDF 609
+SLG ICNAHVVHADL A +CL+LA+L+ +AVDF KTG T+P L+ ++YPDF
Sbjct: 919 ESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDF 978
Query: 610 MEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQ-SYDTDMEVDGFEDYITD 668
M K++ Y+S++++GKLYR VKD+ + + + V YDT +E+ G +I D
Sbjct: 979 MGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYDTTLEILGSTTFIDD 1038
Query: 669 AFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRD--LEAIIFAVKSLKKE 726
A+ K YD +L L+ Y + E E+++G I M K KK+ E + A +L+KE
Sbjct: 1039 AWNSKCSYDGQLNGLLGQYKVNREEEVVTGYIWSMPKYNAKKQGELKERLKHAYNTLRKE 1098
Query: 727 ARAWFNKKNES-----DSSHEDVYA-KASAWYHVAYHPSYWGRYKE----EGMNRTHFLS 776
R F + D D+Y KASAWY V YHP + R E + ++ T LS
Sbjct: 1099 FRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWVARSLELQLADAVSNTVMLS 1158
Query: 777 FPWCIHDKLIEIKRGKQR 794
F W D L IK +R
Sbjct: 1159 FAWIAADYLARIKIRHRR 1176
>gi|167995454|gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
Length = 1197
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 341/803 (42%), Positives = 482/803 (60%), Gaps = 50/803 (6%)
Query: 30 RKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLR 89
RK++L L LDD ++ V ++++TP+K Y P + LSNRV+R+Y D FLR
Sbjct: 391 RKWLLKNPKLLERTGELDD-IVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLR 449
Query: 90 LSFVDEDLDKL--------YSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFET 141
++F+DE + L +T++ + S++N +R T I++RV S L G + +K+
Sbjct: 450 VTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQR-TAIFQRVKSILSRGFHLCGRKYSF 508
Query: 142 LAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHV 201
LAFS +Q++D S W FA P++ I MG F + +NVAK AAR+GQ F S+ + V
Sbjct: 509 LAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSN-RNVAKCAARMGQCFSSTYATVEV 567
Query: 202 DSSDIEI-IPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYK 260
SS++ +PD+E Y FSDGIG ISA+LA VA+ ++ PSA+QIRY G K
Sbjct: 568 PSSEVNSELPDIERNG----YVFSDGIGMISADLAVEVAEKLHLSVNPPSAYQIRYAGCK 623
Query: 261 GVVAVDPTSS--TKLSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDH 318
GVVA PT + +LSLR SM K+ S T L+I + +++QP FLNRQ++TLLS+L ++D
Sbjct: 624 GVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDG 683
Query: 319 VFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQ 378
+F + Q+E ++ LD +L D A + + S E N +L G+KP EP L ML
Sbjct: 684 IFWEMQKEMISGLDKMLVDSDVAFDVIT-ASCAEAGNTAAIMLSAGFKPQSEPHLRGMLS 742
Query: 379 TFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRS 438
+ RAS L +LR + RIF+ +GR +MGCLDE G LE GQ F+Q S+ L+N C +
Sbjct: 743 SIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPS----LEN-CFIKH 797
Query: 439 G--------ELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHT 490
G L VV+G VV+AKNPCLHPGD+R+L AVDVP LHH+ DC+VFP KG RPH+
Sbjct: 798 GPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHS 857
Query: 491 NECSGSDLDGDVYFVCWDHELIPPLQ--FPPMDYTPAPEKVLARDMTIEDVEEYFADYIV 548
NE SGSDLDGD+YFV WD LIPP + + PM+Y PA K + R + D+ ++F+ +V
Sbjct: 858 NEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQMGRQVNHMDIIDFFSKNMV 917
Query: 549 NDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPD 608
+SLG ICNAHVVHADL A +CL+LA+L+ +AVDF KTG T+P L+ ++YPD
Sbjct: 918 QESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPD 977
Query: 609 FMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQ-SYDTDMEVDGFEDYIT 667
FM K++ Y+S++++GKLYR VKD+ + + + V YD+ +E+ G +I
Sbjct: 978 FMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPNDIPYDSSLEIPGSTAFID 1037
Query: 668 DAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRD--LEAIIFAVKSLKK 725
DA+ K YD +L L+ Y + E E+++G I M K KK+ E + A +L+K
Sbjct: 1038 DAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAYNTLRK 1097
Query: 726 EARAWFNKKNES-----DSSHEDVYA-KASAWYHVAYHPSYWGRYKE----EGMNRTHFL 775
E R F + D D+Y KASAWY V Y+P + R E + ++ T L
Sbjct: 1098 EFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYNPHWVARSLELQLPDAVSSTVML 1157
Query: 776 SFPWCIHDKLIEIK---RGKQRS 795
SF W D L IK RG Q S
Sbjct: 1158 SFAWIAADYLARIKIRHRGLQYS 1180
>gi|226596555|gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
Length = 1197
Score = 573 bits (1478), Expect = e-160, Method: Compositional matrix adjust.
Identities = 337/793 (42%), Positives = 475/793 (59%), Gaps = 45/793 (5%)
Query: 30 RKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLR 89
+K++L L LDD ++ V ++++TP+K Y P + LSNRV+R+Y D FLR
Sbjct: 391 QKWLLKNPKLLERTGELDD-IVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLR 449
Query: 90 LSFVDEDLDKL-------YSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETL 142
++F+DE + L Y+ + I+S + + T I++RV S L G + +K+ L
Sbjct: 450 VTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSKGFHLCGRKYSFL 509
Query: 143 AFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVD 202
AFS +Q++D S W FA P++ I MG F + +NVAK AAR+GQ F S+ + V
Sbjct: 510 AFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSN-RNVAKCAARMGQCFSSTYATVEVP 568
Query: 203 SSDIEI-IPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKG 261
SS++ +PD+E Y FSDGIG ISA+LA VA+ ++ P+A+QIRY G KG
Sbjct: 569 SSEVNSELPDIERNG----YVFSDGIGMISADLAIEVAEKLHLSVNPPAAYQIRYAGCKG 624
Query: 262 VVAVDPTSS--TKLSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHV 319
VVA PT + +LSLR SM K+ S T L+I + +++QP FLNRQ++TLLS+L ++D +
Sbjct: 625 VVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGI 684
Query: 320 FEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQT 379
F + Q+E +A LD +L D A + + S E N +L G+KP EP L ML +
Sbjct: 685 FWEMQKEMIAGLDKMLVDSDVAFDVIT-ASCAEAGNTAALMLSAGFKPQSEPHLRGMLSS 743
Query: 380 FRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSG 439
RAS L +LR + RIF+ +GR +MGCLDE G LE GQ F+Q S+ L+N C + G
Sbjct: 744 IRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPS----LEN-CFVKHG 798
Query: 440 --------ELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTN 491
L VV+G VV+AKNPCLHPGD+R+L AVDVPSL H+ DC+VFP KG RPH+N
Sbjct: 799 SKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSN 858
Query: 492 ECSGSDLDGDVYFVCWDHELIPPLQ--FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVN 549
E SGSDLDGD+YFV WD +IPP + + PM+Y PA K L R + D+ ++F+ +V
Sbjct: 859 EASGSDLDGDLYFVTWDENIIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQ 918
Query: 550 DSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDF 609
+SLG ICNAHVVHADL A +CL+LA+L+ +AVDF KTG T+P L+ ++YPDF
Sbjct: 919 ESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDF 978
Query: 610 MEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQ-SYDTDMEVDGFEDYITD 668
M K++ Y+S++++GKLYR VKD+ + + + V YDT +E+ G +I D
Sbjct: 979 MGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYDTTLEILGSTTFIDD 1038
Query: 669 AFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRD--LEAIIFAVKSLKKE 726
A+ K YD +L L+ Y + E E+++G I M K KK+ E + A +L+KE
Sbjct: 1039 AWNSKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAYNTLRKE 1098
Query: 727 ARAWFNKKNES-----DSSHEDVYA-KASAWYHVAYHPSYWGRYKE----EGMNRTHFLS 776
R F + D D+Y KASAWY V YHP + R E + ++ T LS
Sbjct: 1099 FRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWVARSLELQIPDAVSSTVMLS 1158
Query: 777 FPWCIHDKLIEIK 789
F W D L IK
Sbjct: 1159 FAWIAADYLARIK 1171
>gi|255548928|ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
Length = 1203
Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust.
Identities = 335/799 (41%), Positives = 463/799 (57%), Gaps = 51/799 (6%)
Query: 30 RKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLR 89
++++L L + LDD ++ + ++ +TP++ Y PE+ LSNRV+R Y D D FLR
Sbjct: 391 QQWLLKNPKLFRSSKQLDD-IVEIRRLAITPTRAYCLPPEVELSNRVLRRYKDIADQFLR 449
Query: 90 LSFVDEDLDKLYSTVLS----PL---ISSTNEERHTTIYERVLSTLRNGIVIGDKKFETL 142
++F+DE L + + L+ P+ I+S + + T I++RV S L +G + +K+ L
Sbjct: 450 VTFMDEGLQTMNANTLTYYCAPIVRDITSNSFSQKTRIFKRVKSILTDGFYLCGRKYSFL 509
Query: 143 AFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVD 202
AFS++Q++D S W FA + + + IR MG F + +N+AK AAR+GQ F S+ + V
Sbjct: 510 AFSSNQLRDRSAWFFAEDGKTSVSKIRNWMGKFTN-RNIAKCAARMGQCFSSTYATVEVP 568
Query: 203 SSD-IEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKG 261
S++ I +PD+E + Y FSDGIG I+ +LA+ VA+ + P A+QIRY G KG
Sbjct: 569 SAEAILDLPDIERNN----YIFSDGIGMITPDLAKEVAEKLKLEVNPPCAYQIRYAGCKG 624
Query: 262 VVAVDPT--SSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHV 319
VVA P +LSLR SM K+ S T+L+I + +++QP FLNRQ+ITLLSTL + D +
Sbjct: 625 VVACWPAHIDGIRLSLRVSMNKFHSNHTTLEICSWTRFQPGFLNRQIITLLSTLDVPDEI 684
Query: 320 FEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQT 379
F K Q V++L+ + D A + + S E N +L G+ P EP L ML
Sbjct: 685 FWKMQIVMVSKLNQMFMDADVAFDVVT-ASCAEQGNTAAIMLSAGFNPKTEPHLCGMLTC 743
Query: 380 FRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSG 439
RA+ L LR +TRIF+ +GR +MGCLDE G LE GQ F+Q S SC + G
Sbjct: 744 IRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEHGQCFIQVSNPSL-----ESCFWKHG 798
Query: 440 --------ELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTN 491
+L VV+G VVVAKNPCLHPGD+R+L AVD P LHH+ DC+VFP KG RPHTN
Sbjct: 799 SRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAPELHHLHDCLVFPQKGDRPHTN 858
Query: 492 ECSGSDLDGDVYFVCWDHELIPPLQ--FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVN 549
E SGSDLDGD+YFV WD LIPP + + PM Y A K L R + +D+ ++FA +VN
Sbjct: 859 EASGSDLDGDLYFVTWDENLIPPSKRSWLPMQYDAAEAKQLNRPVNHQDIIDFFAKNMVN 918
Query: 550 DSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDF 609
++LG ICNAHVVHADL A C++LA+L+ AVDF KTG T+P L+ ++YPDF
Sbjct: 919 ENLGAICNAHVVHADLSEYGALDENCIKLAELAATAVDFPKTGKLVTMPPHLKPKLYPDF 978
Query: 610 MEKQDKTCYESQRVIGKLYRAVK-------DIAPPTATIKSFTKEVAMQSYDTDMEVDGF 662
M K+D Y S +++G+LYR VK D AT YD D+EV G
Sbjct: 979 MGKEDYQSYNSNKILGRLYRQVKDDYNDDDDDDDDAATSSELNLVRGDIPYDKDLEVSGS 1038
Query: 663 EDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRD--LEAIIFAV 720
DYI DA+ K YD +L L+ Y +K E E+++G I M K +K+ E + +
Sbjct: 1039 SDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTGHIWSMPKCNSRKQGELKERLKQSY 1098
Query: 721 KSLKKEARAWFNKKNE------SDSSHEDVYAKASAWYHVAYHPSYWGRYKE----EGMN 770
SLKKE R F K + D + KASAWY VAYHP + + E +
Sbjct: 1099 HSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASAWYQVAYHPKWVNKSMELQEPDAAG 1158
Query: 771 RTHFLSFPWCIHDKLIEIK 789
LSF W D L IK
Sbjct: 1159 CASMLSFAWIAADYLARIK 1177
>gi|296082033|emb|CBI21038.3| unnamed protein product [Vitis vinifera]
Length = 1035
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 330/819 (40%), Positives = 483/819 (58%), Gaps = 54/819 (6%)
Query: 7 ALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFS 66
AL+ + R ++ + L+ ++ + + + L SP LDD ++ V ++++TPSK Y
Sbjct: 209 ALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPK-ELDD-IVEVRRLVITPSKAYCL 266
Query: 67 GPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS-------PLISSTNEERHTT 119
PE+ LSNRV+R+Y + D FLR++F+DE + + + VL+ +I+S + + T
Sbjct: 267 PPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITSNSFPQKTR 326
Query: 120 IYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIK 179
+++RV + L +G + +K+ LAFS++Q++D S W FA + + I+ MG F + +
Sbjct: 327 VFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSWMGKFTN-R 385
Query: 180 NVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVA 239
NVAK AAR+GQ F S+ + V S +++ +PD++ Y FSDGIGKI +LA VA
Sbjct: 386 NVAKCAARMGQCFSSTYATVEVPSWEVKELPDIKRNG----YDFSDGIGKIVPDLAMEVA 441
Query: 240 KNCGFTIYTPSAFQIRYGGYKGVVAVDPTSS--TKLSLRKSMLKYKSESTSLDILANSKY 297
+ TPSA+QIRY G KGVVA P+ + +LS R SM K+ S+ T L+I + +++
Sbjct: 442 EKLKLE-GTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTILEICSWTRF 500
Query: 298 QPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVL 357
QP FLNRQ++TLLS L + D +F K Q +++L+ +LTD A + L + S E N
Sbjct: 501 QPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVL-IASCAEQGNTA 559
Query: 358 KELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQV 417
+L G+KP EP L ML RA+ LR + RIF+ +GR +MGCLDE G LE GQ
Sbjct: 560 AIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQGQC 619
Query: 418 FVQCSA-SRRREFLDNSCN-NRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHM 475
F+Q S+ S FL + + L V++G V +AKNPCLHPGD+R+L AVD P L H+
Sbjct: 620 FIQVSSPSLENCFLKHGSRFSAQKNLKVIKGIVAIAKNPCLHPGDVRILEAVDAPGLEHL 679
Query: 476 VDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ--FPPMDYTPAPEKVLARD 533
VDC+VFP KG RPH+NE SGSDLDGD+YFV W+ LIPP + +PPM Y A K LAR+
Sbjct: 680 VDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKALARE 739
Query: 534 MTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGV 593
+T D+ ++F +VN++LG ICNAHVVHAD A CL+LA+ + AVDF KTG
Sbjct: 740 VTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDFPKTGK 799
Query: 594 AATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQS- 652
T+P L+ ++YPDFM K++ Y S +++GK+YR +KD ++ ++V+ S
Sbjct: 800 LVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKD---------AYNEDVSESSE 850
Query: 653 ---------YDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEM 703
+D D+ + G D+I DA+ +K YD +L L+ Y +K E E+++G + M
Sbjct: 851 QIFGADKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSM 910
Query: 704 AKSFDKKRD--LEAIIFAVKSLKKEARAWFNKKNE-----SDSSHEDVY-AKASAWYHVA 755
K +K+ E + A SLKKE R F K N +D +Y KASAWY V
Sbjct: 911 PKYKSRKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVT 970
Query: 756 YHPSYWGRYKE-----EGMNRTHFLSFPWCIHDKLIEIK 789
YHP++ + E E LSF W D L IK
Sbjct: 971 YHPTWVKKSLELQNPDEVFGERVMLSFAWITADYLARIK 1009
>gi|225430281|ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
Length = 1197
Score = 571 bits (1472), Expect = e-160, Method: Compositional matrix adjust.
Identities = 330/819 (40%), Positives = 483/819 (58%), Gaps = 54/819 (6%)
Query: 7 ALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFS 66
AL+ + R ++ + L+ ++ + + + L SP LDD ++ V ++++TPSK Y
Sbjct: 371 ALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPK-ELDD-IVEVRRLVITPSKAYCL 428
Query: 67 GPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS-------PLISSTNEERHTT 119
PE+ LSNRV+R+Y + D FLR++F+DE + + + VL+ +I+S + + T
Sbjct: 429 PPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITSNSFPQKTR 488
Query: 120 IYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIK 179
+++RV + L +G + +K+ LAFS++Q++D S W FA + + I+ MG F + +
Sbjct: 489 VFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSWMGKFTN-R 547
Query: 180 NVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVA 239
NVAK AAR+GQ F S+ + V S +++ +PD++ Y FSDGIGKI +LA VA
Sbjct: 548 NVAKCAARMGQCFSSTYATVEVPSWEVKELPDIKRNG----YDFSDGIGKIVPDLAMEVA 603
Query: 240 KNCGFTIYTPSAFQIRYGGYKGVVAVDPTSS--TKLSLRKSMLKYKSESTSLDILANSKY 297
+ TPSA+QIRY G KGVVA P+ + +LS R SM K+ S+ T L+I + +++
Sbjct: 604 EKLKLE-GTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTILEICSWTRF 662
Query: 298 QPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVL 357
QP FLNRQ++TLLS L + D +F K Q +++L+ +LTD A + L + S E N
Sbjct: 663 QPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVL-IASCAEQGNTA 721
Query: 358 KELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQV 417
+L G+KP EP L ML RA+ LR + RIF+ +GR +MGCLDE G LE GQ
Sbjct: 722 AIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQGQC 781
Query: 418 FVQCSA-SRRREFLDNSCN-NRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHM 475
F+Q S+ S FL + + L V++G V +AKNPCLHPGD+R+L AVD P L H+
Sbjct: 782 FIQVSSPSLENCFLKHGSRFSAQKNLKVIKGIVAIAKNPCLHPGDVRILEAVDAPGLEHL 841
Query: 476 VDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ--FPPMDYTPAPEKVLARD 533
VDC+VFP KG RPH+NE SGSDLDGD+YFV W+ LIPP + +PPM Y A K LAR+
Sbjct: 842 VDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKALARE 901
Query: 534 MTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGV 593
+T D+ ++F +VN++LG ICNAHVVHAD A CL+LA+ + AVDF KTG
Sbjct: 902 VTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDFPKTGK 961
Query: 594 AATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQS- 652
T+P L+ ++YPDFM K++ Y S +++GK+YR +KD ++ ++V+ S
Sbjct: 962 LVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKD---------AYNEDVSESSE 1012
Query: 653 ---------YDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEM 703
+D D+ + G D+I DA+ +K YD +L L+ Y +K E E+++G + M
Sbjct: 1013 QIFGADKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSM 1072
Query: 704 AKSFDKKRD--LEAIIFAVKSLKKEARAWFNKKNE-----SDSSHEDVY-AKASAWYHVA 755
K +K+ E + A SLKKE R F K N +D +Y KASAWY V
Sbjct: 1073 PKYKSRKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVT 1132
Query: 756 YHPSYWGRYKE-----EGMNRTHFLSFPWCIHDKLIEIK 789
YHP++ + E E LSF W D L IK
Sbjct: 1133 YHPTWVKKSLELQNPDEVFGERVMLSFAWITADYLARIK 1171
>gi|194719815|emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 569 bits (1467), Expect = e-159, Method: Compositional matrix adjust.
Identities = 342/803 (42%), Positives = 480/803 (59%), Gaps = 50/803 (6%)
Query: 30 RKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLR 89
+K++L L LDD ++ V ++++TP+K Y P + LSNRV+R+Y D FLR
Sbjct: 391 QKWLLKNPKLLERTGELDD-IVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLR 449
Query: 90 LSFVDEDLDKL--------YSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFET 141
++F+DE + L +T++ + S++N +R T I++RV S L G + +K+
Sbjct: 450 VTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQR-TAIFQRVKSILSRGFHLCGRKYSF 508
Query: 142 LAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHV 201
LAFS +Q++D S W FA P++ I MG F + +NVAK AAR+GQ F S+ + V
Sbjct: 509 LAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSN-RNVAKCAARMGQCFSSTYATVEV 567
Query: 202 DSSDIEI-IPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYK 260
SS++ +PD+E Y FSDGIG ISA+LA VA+ + PSA+QIRY GYK
Sbjct: 568 PSSEVNSELPDIERNG----YVFSDGIGMISADLAIEVAEKLHLNVNPPSAYQIRYAGYK 623
Query: 261 GVVAVDPTSSTK--LSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDH 318
GVVA PT + LSLR SM K+ S T L+I + +++QP FLNRQ++TLLS+L ++D
Sbjct: 624 GVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDG 683
Query: 319 VFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQ 378
+F + Q+E ++ LD +L D A + + S E N +L G+KP EP L ML
Sbjct: 684 IFWEMQKEMISGLDKMLVDSDVAFDVIT-ASCAEAGNTAALMLSAGFKPQSEPHLRGMLS 742
Query: 379 TFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRS 438
+ RAS L +LR + RIF+ +GR +MGCLDE G LE GQ F+Q S+ L+N C +
Sbjct: 743 SIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPS----LEN-CFVKH 797
Query: 439 G--------ELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHT 490
G L VV+G VV+AKNPCLHPGD+R+L AVDVPSL H+ DC+VFP KG RPH+
Sbjct: 798 GPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHS 857
Query: 491 NECSGSDLDGDVYFVCWDHELIPPLQ--FPPMDYTPAPEKVLARDMTIEDVEEYFADYIV 548
NE SGSDLDGD+YFV WD LIPP + + PM+Y PA K L R + D+ ++F+ +V
Sbjct: 858 NEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMV 917
Query: 549 NDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPD 608
+SLG ICNAHVVHADL A +CL+LA+L+ +AVDF KTG T+P L+ ++YPD
Sbjct: 918 QESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPD 977
Query: 609 FMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQ-SYDTDMEVDGFEDYIT 667
FM K++ Y+S++++GKLYR VKD+ + + + V YDT + + G +I
Sbjct: 978 FMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYDTTLVIPGSTVFID 1037
Query: 668 DAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRD--LEAIIFAVKSLKK 725
DA+ K YD +L L+ Y + E E+++G I M K KK+ E + A +L+K
Sbjct: 1038 DAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAYNTLRK 1097
Query: 726 EARAWFNK-----KNESDSSHEDVYA-KASAWYHVAYHPSYWGRYKE----EGMNRTHFL 775
E R F + D D+Y KASAWY V Y+P + R E + ++ T L
Sbjct: 1098 EFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWVARSLELQLPDAISSTVML 1157
Query: 776 SFPWCIHDKLIEIK---RGKQRS 795
SF W D L IK RG Q S
Sbjct: 1158 SFAWIAADYLARIKIRHRGLQYS 1180
>gi|357119219|ref|XP_003561343.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like
[Brachypodium distachyon]
Length = 1208
Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust.
Identities = 327/794 (41%), Positives = 477/794 (60%), Gaps = 42/794 (5%)
Query: 25 LEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEI 84
LE +R+ + + L S V D+ + V ++++TP+ P+I LSNRV+R Y +
Sbjct: 402 LEHAHRRVASNPKLLRSGKVGDDN--VEVRRLVITPTSASCLPPQIELSNRVLRHYHEVA 459
Query: 85 DNFLRLSFVDEDLDKLYSTVL----SPLISSTNE---ERHTTIYERVLSTLRNGIVIGDK 137
D FLR++F+DE + L + VL +P++ + ++ T +Y+RV L G + +
Sbjct: 460 DRFLRVTFMDEGMQSLNNNVLNFYTAPIVKALRPNSFQQKTAVYKRVKMFLTEGFHMCGR 519
Query: 138 KFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSRE 197
K+ LAFS++Q++D S W FA + T IR+ MG F KNVAK+AAR+GQ F S+
Sbjct: 520 KYSFLAFSSNQLRDRSAWFFAEDSKTTVESIRKWMGRFTS-KNVAKHAARMGQCFSSTYA 578
Query: 198 ALHVDSSDI-EIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRY 256
+ V ++ E + DVE + Y FSDGIGKI+ +LA VA+ PSA+QIRY
Sbjct: 579 TVMVKPDEVNESLEDVERNN----YTFSDGIGKITPDLAMEVAEKLQLMDSPPSAYQIRY 634
Query: 257 GGYKGVVAV--DPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLG 314
GYKGV+AV + +LSLR SM K++S+ + L++++ +++QP FLNRQ+I LLS+L
Sbjct: 635 AGYKGVIAVWQGNNNGIRLSLRPSMKKFESKHSVLEVVSWTRFQPGFLNRQIILLLSSLN 694
Query: 315 IRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLL 374
+ D +F + Q + L+ IL D A E + S E N +L G+ P EP L
Sbjct: 695 VSDDIFSQMQESMLFNLNKILLDSDVAFEVVT-TSCAEQGNTAALMLSAGFGPGTEPHLR 753
Query: 375 MMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA-SRRREFLDNS 433
ML R++ L +L +TRIF+ GR +MGCLDE G LE GQ FVQ SA S R FL +
Sbjct: 754 GMLLAIRSAQLQDLLEKTRIFVPKGRWLMGCLDELGVLEQGQCFVQASAASLDRCFLKHG 813
Query: 434 CN-NRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNE 492
+ + ++ G VV+AKNPCLHPGD+R+L AVDVP LHH+VDC+VFP KG+RPH NE
Sbjct: 814 SRFSANKNTDIIVGTVVIAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPQKGERPHPNE 873
Query: 493 CSGSDLDGDVYFVCWDHELIPPLQ--FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVND 550
SGSDLDGD+YFV WD +L+PP + + PMDY+PA K R ++ D+ ++F +VN+
Sbjct: 874 ASGSDLDGDLYFVTWDEKLVPPGKKSWNPMDYSPAEAKQQQRQVSQHDIVDFFLKNMVNE 933
Query: 551 SLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFM 610
+LG ICNAHVVHADL A +C+ LA+L+ AVDF KTG T+P LR +IYPDFM
Sbjct: 934 NLGPICNAHVVHADLSEYGAMDEKCIRLAELAATAVDFPKTGKLVTMPPELRPKIYPDFM 993
Query: 611 EKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQ----SYDTDMEVDGFEDYI 666
K++ Y+S++++G+LYR++++ A+ E A YDTD+EV G ++
Sbjct: 994 LKEESRSYKSEKILGRLYRSIQE-----ASGGDLVSEEACTLNDLLYDTDLEVPGASRFL 1048
Query: 667 TDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRD--LEAIIFAVKSLK 724
T A++ K Y+ +L L++ + TEAE+++G + + K +K+ E I A +L+
Sbjct: 1049 TSAWECKCNYEGQLNVLLNQSRVCTEAELVTGHVWSLPKYNSRKQGEIRERIKNAYAALQ 1108
Query: 725 KEARAWFNKKNE----SDSSHEDVYA-KASAWYHVAYHPSYWGRYK----EEGMNRTHFL 775
KE R+ F + +D +Y KASAWY V YHP + + + E+G R L
Sbjct: 1109 KEYRSVFESLTDQCQITDDEKNLLYERKASAWYQVTYHPKWVEKLRAMLDEDGEERPARL 1168
Query: 776 SFPWCIHDKLIEIK 789
SF W D L+ IK
Sbjct: 1169 SFAWIAVDYLVRIK 1182
>gi|356507732|ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Glycine max]
Length = 1204
Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust.
Identities = 338/812 (41%), Positives = 470/812 (57%), Gaps = 62/812 (7%)
Query: 24 WLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDE 83
WL + Y +S++ LDD ++ V +++VTPSK Y PE+ LSNRV+R + +
Sbjct: 395 WLLRNPKLYQISKQ--------LDD-IVEVRRLVVTPSKAYCIPPEVELSNRVLRKFREV 445
Query: 84 IDNFLRLSFVDEDLDKLYSTVL----SPL---ISSTNEERHTTIYERVLSTLRNGIVIGD 136
D FLR++F+DE + + L +P+ I+S + + T IY+RV + L G
Sbjct: 446 SDCFLRVTFMDEGMQTINVNALNYYVAPIVKEITSNSFSQKTKIYKRVKTILEEGFYFCG 505
Query: 137 KKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSR 196
+K+ LAFS++Q++D S W FA ++ DIR MG F +NVAK AAR+GQ F S+
Sbjct: 506 RKYSFLAFSSNQLRDRSAWFFAED-KIRCDDIRNWMGKFNQ-RNVAKCAARMGQCFSSTY 563
Query: 197 EALHVDSSDIE-IIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIR 255
+ V ++++ ++PDVE + Y FSDGIG I+ +LA VA+ PSA+QIR
Sbjct: 564 ATVEVAANEVNSMLPDVERNN----YIFSDGIGVITHDLAREVAEKLKLD-NVPSAYQIR 618
Query: 256 YGGYKGVVAVDPTSS--TKLSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTL 313
Y G+KGVVA P +LSLR SM K++S L+I A +++QP FLNRQ+ITLLS L
Sbjct: 619 YAGFKGVVASWPAKGDGVRLSLRPSMNKFQSTHNILEICAWTRFQPGFLNRQIITLLSAL 678
Query: 314 GIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFL 373
G+ D +F + Q + +L+ +L D A + L S E+ N +L CG+ P EP L
Sbjct: 679 GVPDEIFWQMQEAMLLKLNQMLVDADIAFDVLT-KSCAEHGNAAAIMLSCGFSPLTEPHL 737
Query: 374 LMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNS 433
ML + RA+ L LR ++RIF+ +GR +MG LDE G LE GQ FVQ S L+N
Sbjct: 738 RGMLTSTRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPS----LEN- 792
Query: 434 CNNRSG-------ELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGK 486
C ++ G L VV+G VV+AKNPCLHPGD+RVL AVD P LHH+ DC+VFP KG
Sbjct: 793 CFSKHGSRFSETKNLHVVKGFVVIAKNPCLHPGDVRVLEAVDAPDLHHLNDCLVFPQKGD 852
Query: 487 RPHTNECSGSDLDGDVYFVCWDHELIPPLQ--FPPMDYTPAPEKVLARDMTIEDVEEYFA 544
RPHTNE SGSDLDGD+YFV WD LIPP + + PM+Y P K+L R + D+ E+F
Sbjct: 853 RPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMEYAPQESKLLTRQVMTRDIIEFFV 912
Query: 545 DYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVE 604
+VN+ LG ICNAHVVHAD A +C+ LA+L+ AVDF KTG T+P L+ +
Sbjct: 913 RNMVNEHLGAICNAHVVHADSSDYGALDEKCIHLAELAATAVDFPKTGKLVTMPPHLKPK 972
Query: 605 IYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFED 664
+YPDFM K+ Y S +++G+LYR +KD YD D+EV G D
Sbjct: 973 LYPDFMGKERHQSYRSNKILGRLYRHIKDAYDEDIEAPYLNFVTGDIPYDKDLEVPGSAD 1032
Query: 665 YITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRD--LEAIIFAVKS 722
+I DA++ K YD +L L+ Y +K E E+++G I M K +K+ E + + +
Sbjct: 1033 FIADAWEQKCSYDGQLSGLIGQYKVKREEEVVTGQIWSMPKYNSRKQGELKERLKHSYSA 1092
Query: 723 LKKEARAWFNKKNE-----SDSSHEDVY-AKASAWYHVAYHPSYWGR-----------YK 765
LKKE R F K N S+ +Y KASAWY V YHP + + +
Sbjct: 1093 LKKEFRYTFEKLNSDVGELSEEEKNLLYEQKASAWYQVTYHPEWVKKSLDLQDKSSENQE 1152
Query: 766 EEGMNRTHFLSFPWCIHDKL--IEIKRGKQRS 795
+ + T LSFPW D L +I++ QRS
Sbjct: 1153 ADSLGSTVMLSFPWIAVDYLARTKIRQRHQRS 1184
>gi|163930853|dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 337/798 (42%), Positives = 476/798 (59%), Gaps = 45/798 (5%)
Query: 30 RKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLR 89
+K++L L LDD ++ V ++++TP+K Y P + LSNRV+R+Y D FLR
Sbjct: 391 QKWLLKNPKLLDRTGELDD-IVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLR 449
Query: 90 LSFVDEDLDKL-------YSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETL 142
++F+DE + L Y+ + I+S + + T I++RV S L G + +K+ L
Sbjct: 450 VTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSKGFHLCGRKYSFL 509
Query: 143 AFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVD 202
AFS +Q++D S W FA P++ I MG F + +NVAK AAR+GQ F S+ + V
Sbjct: 510 AFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSN-RNVAKCAARMGQCFSSTYATVEVP 568
Query: 203 SSDIEI-IPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKG 261
S ++ +PD+E Y FSDGIG ISA+LA VA+ ++ PSA+QIRY G KG
Sbjct: 569 SREVNSELPDIERNG----YVFSDGIGMISADLAIEVAEKLHLSVNPPSAYQIRYAGCKG 624
Query: 262 VVAVDPTSS--TKLSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHV 319
VVA PT + +LSLR SM K+ S T L+I + +++QP FLNRQ++TLLS+L ++D +
Sbjct: 625 VVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGI 684
Query: 320 FEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQT 379
F + Q+E ++ LD +L D A + + S E N +L G+KP EP L ML +
Sbjct: 685 FWEMQKEMISGLDKMLVDSDVAFDVIT-ASCAEAGNTAAIMLSAGFKPQSEPHLRGMLSS 743
Query: 380 FRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSG 439
RAS L +LR + RIF+ +GR +MGCLDE G LE GQ F+Q S+ L+N C + G
Sbjct: 744 IRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPS----LEN-CFVKHG 798
Query: 440 --------ELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTN 491
L VV+G VV+AKNPCLHPGD+R+L AVDVPSL H+ DC+VFP KG RPH+N
Sbjct: 799 PKFSDIKQNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSN 858
Query: 492 ECSGSDLDGDVYFVCWDHELIPPLQ--FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVN 549
E SGSDLDGD+YFV WD LIPP + + PM+Y PA K L R + D+ ++F+ +V
Sbjct: 859 EASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQ 918
Query: 550 DSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDF 609
+SLG ICNAHVVHADL A +CL+LA+L+ +AVDF KTG T+P L+ ++YPDF
Sbjct: 919 ESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDF 978
Query: 610 MEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQ-SYDTDMEVDGFEDYITD 668
M K++ Y+S++++GKLYR VKD+ + + + V YD+ +E+ G +I D
Sbjct: 979 MGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYDSTLEILGSTAFIDD 1038
Query: 669 AFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRD--LEAIIFAVKSLKKE 726
A+ K YD +L L+ Y + E E+++G I M K KK+ E + A +L+KE
Sbjct: 1039 AWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAYNTLRKE 1098
Query: 727 ARAWFNK-----KNESDSSHEDVYA-KASAWYHVAYHPSYWGRYKE----EGMNRTHFLS 776
R F + D D+Y KASAWY V YHP + R E + ++ T LS
Sbjct: 1099 FRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYHPHWVARSLELQLPDAVSNTVMLS 1158
Query: 777 FPWCIHDKLIEIKRGKQR 794
F W D L IK +R
Sbjct: 1159 FAWIAADYLARIKIRHRR 1176
>gi|449441914|ref|XP_004138727.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase 6 [Cucumis sativus]
Length = 1197
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 322/781 (41%), Positives = 459/781 (58%), Gaps = 47/781 (6%)
Query: 50 LIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKL----YSTVL 105
++ + ++++TPSK Y PE+ LSNRV+R Y D D FLR++F+DE + K+ Y+ +
Sbjct: 409 IVEIRRLVITPSKAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYV 468
Query: 106 SPL---ISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPE 162
+P+ I+S++ + T I+ R+ L++G + +K+ LA+S++Q++D S W FA
Sbjct: 469 APIVKEITSSSFPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKS 528
Query: 163 LTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDV-EVEDDGITY 221
++ I MG F + KNVAK AAR+GQ F S+ + V + + D+ +VE +G Y
Sbjct: 529 ISVDAILGWMGKFTN-KNVAKCAARIGQCFSSTYATIEVPRNMVN--HDLSDVERNG--Y 583
Query: 222 CFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTS--STKLSLRKSM 279
FSDGIG I+ +LA+ VA P A+QIRY GYKGVVA P+ +L+LR SM
Sbjct: 584 VFSDGIGTITPDLAQEVADKLKMDGSPPCAYQIRYAGYKGVVATWPSKKDGIRLALRPSM 643
Query: 280 LKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPL 339
K++S L+I + +++QP FLNRQ+ITLLSTL + D +F Q +++LD ++TD
Sbjct: 644 NKFESNHRILEICSWTRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTD 703
Query: 340 KAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNG 399
A E L S E N +L G++P EP L ML RA+ L LR + RIF+ G
Sbjct: 704 VAFEVLT-ASCAEQGNAAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEG 762
Query: 400 RAMMGCLDETGTLESGQVFVQCSA-------SRRREFLDNSCNNRSGELGVVEGKVVVAK 452
R MGC DE+G L+ GQ F+Q S S+ + NN L VV G VV+AK
Sbjct: 763 RWCMGCFDESGVLQEGQCFIQVSTPLLEKCFSKHGSLFAETKNN----LTVVRGTVVIAK 818
Query: 453 NPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI 512
NPCLHPGD+R+L AVD P LHH+ DC+VFP G+RPHTNE SGSDLDGD+YF WD LI
Sbjct: 819 NPCLHPGDVRILEAVDAPELHHLYDCLVFPRNGERPHTNEASGSDLDGDLYFTTWDGNLI 878
Query: 513 PPLQ--FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKA 570
PP + +PPM+Y PA K L R +T D+ E+FA ++N+SLG ICNAHVVHAD A
Sbjct: 879 PPSKKSWPPMEYAPAEVKTLQRKITRWDIMEFFAKNMINESLGTICNAHVVHADRSKHGA 938
Query: 571 RSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRA 630
C++L++L+ AVDF KTG T+P L+ ++YPDFM K+ Y+S +++GK+YR
Sbjct: 939 LDENCIQLSELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRR 998
Query: 631 VKDIAPPTATIKSFTKEVAMQS----YDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDY 686
++D I S +E+ YD D+EV G ED+I +A+ K YD +L L+
Sbjct: 999 IRDAYDDDDMITS--RELNFTPGDVHYDVDLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQ 1056
Query: 687 YGIKTEAEILSGCIMEMAKSFDKKRD--LEAIIFAVKSLKKEARAWFN------KKNESD 738
Y + E EI++G I M K +K+ E + + +LKK+ R F ++ D
Sbjct: 1057 YKVNREEEIVTGHIWSMPKYVSRKQGELKEKLKHSYSTLKKDFRQVFENLGPEFEQLTCD 1116
Query: 739 SSHEDVYAKASAWYHVAYHPSYWGRYKE----EGMNRTHFLSFPWCIHDKLIEIKRGKQR 794
+ KASAWY VAYHP++ + E + LSFPW D L IK +R
Sbjct: 1117 ERNALYEKKASAWYQVAYHPTWLKKSLELREPDAPEAVPMLSFPWIAADYLARIKIKCRR 1176
Query: 795 S 795
+
Sbjct: 1177 T 1177
>gi|449499234|ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
Length = 1197
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 322/781 (41%), Positives = 459/781 (58%), Gaps = 47/781 (6%)
Query: 50 LIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKL----YSTVL 105
++ + ++++TPSK Y PE+ LSNRV+R Y D D FLR++F+DE + K+ Y+ +
Sbjct: 409 IVEIRRLVITPSKAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYV 468
Query: 106 SPL---ISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPE 162
+P+ I+S++ + T I+ R+ L++G + +K+ LA+S++Q++D S W FA
Sbjct: 469 APIVKEITSSSFPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKS 528
Query: 163 LTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDV-EVEDDGITY 221
++ I MG F + KNVAK AAR+GQ F S+ + V + + D+ +VE +G Y
Sbjct: 529 ISVDAILGWMGKFTN-KNVAKCAARIGQCFSSTYATIEVPRNMVN--HDLSDVERNG--Y 583
Query: 222 CFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTS--STKLSLRKSM 279
FSDGIG I+ +LA+ VA P A+QIRY GYKGVVA P+ +L+LR SM
Sbjct: 584 VFSDGIGTITPDLAQEVADKLKMDGSPPCAYQIRYAGYKGVVATWPSKKDGIRLALRPSM 643
Query: 280 LKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPL 339
K++S L+I + +++QP FLNRQ+ITLLSTL + D +F Q +++LD ++TD
Sbjct: 644 NKFESNHRILEICSWTRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTD 703
Query: 340 KAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNG 399
A E L S E N +L G++P EP L ML RA+ L LR + RIF+ G
Sbjct: 704 VAFEVLT-ASCAEQGNAAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEG 762
Query: 400 RAMMGCLDETGTLESGQVFVQCSA-------SRRREFLDNSCNNRSGELGVVEGKVVVAK 452
R MGC DE+G L+ GQ F+Q S S+ + NN L VV G VV+AK
Sbjct: 763 RWCMGCFDESGVLQEGQCFIQVSTPLLEKCFSKHGSLFAETKNN----LTVVRGTVVIAK 818
Query: 453 NPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI 512
NPCLHPGD+R+L AVD P LHH+ DC+VFP G+RPHTNE SGSDLDGD+YF WD LI
Sbjct: 819 NPCLHPGDVRILEAVDAPELHHLYDCLVFPRNGERPHTNEASGSDLDGDLYFTTWDGNLI 878
Query: 513 PPLQ--FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKA 570
PP + +PPM+Y PA K L R +T D+ E+FA ++N+SLG ICNAHVVHAD A
Sbjct: 879 PPSKKSWPPMEYAPAEVKTLQRKITRWDIMEFFAKNMINESLGTICNAHVVHADRSKHGA 938
Query: 571 RSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRA 630
C++L++L+ AVDF KTG T+P L+ ++YPDFM K+ Y+S +++GK+YR
Sbjct: 939 LDENCIQLSELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRR 998
Query: 631 VKDIAPPTATIKSFTKEVAMQS----YDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDY 686
++D I S +E+ YD D+EV G ED+I +A+ K YD +L L+
Sbjct: 999 IRDAYDDDDMITS--RELNFTPGDVHYDVDLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQ 1056
Query: 687 YGIKTEAEILSGCIMEMAKSFDKKRD--LEAIIFAVKSLKKEARAWFN------KKNESD 738
Y + E EI++G I M K +K+ E + + +LKK+ R F ++ D
Sbjct: 1057 YKVNREEEIVTGHIWSMPKYVSRKQGELKEKLKHSYSTLKKDFRQVFENLGPEFEQLTCD 1116
Query: 739 SSHEDVYAKASAWYHVAYHPSYWGRYKE----EGMNRTHFLSFPWCIHDKLIEIKRGKQR 794
+ KASAWY VAYHP++ + E + LSFPW D L IK +R
Sbjct: 1117 ERNALYEKKASAWYQVAYHPTWLKKSLELREPDAPEAVPMLSFPWIAADYLARIKIKCRR 1176
Query: 795 S 795
+
Sbjct: 1177 T 1177
>gi|224089239|ref|XP_002308662.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222854638|gb|EEE92185.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1198
Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust.
Identities = 329/776 (42%), Positives = 455/776 (58%), Gaps = 45/776 (5%)
Query: 48 DGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVL-- 105
D + + ++++TP+K Y PE+ LSNRV+R Y D D FLR++F+DE L + S L
Sbjct: 408 DDIAEIRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNY 467
Query: 106 --SPL---ISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASR 160
+P+ I+S + + T I++RV S L G + +++ LAFS++Q++D S W FA
Sbjct: 468 FAAPIVRAITSYSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAED 527
Query: 161 PELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI-IPDVEVEDDGI 219
+ I+ MG F + KN+AK AAR+GQ F S+ + V ++ +PD++
Sbjct: 528 RNINVMAIKSWMGKFTN-KNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNG--- 583
Query: 220 TYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSS--TKLSLRK 277
Y FSDGIG I+ +LA VA+ F P A+QIRY G KGVVA P +LSLR
Sbjct: 584 -YDFSDGIGMITPDLAREVAEKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRS 642
Query: 278 SMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTD 337
SM K++S T L+I + +++QP FLNRQ+ITLLS L + D VF K Q V++L+ +L D
Sbjct: 643 SMNKFQSNHTILEICSWTRFQPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVD 702
Query: 338 PLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQ 397
A + L S E NV +L G+KP EP L ML RA+ L LR + RIF+
Sbjct: 703 SDVAFDVLT-ASCAEQGNVAAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVP 761
Query: 398 NGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSG--------ELGVVEGKVV 449
+GR +MGCLDE G LE GQ F+Q S S +L+N C + G L VV+G VV
Sbjct: 762 SGRWLMGCLDELGVLEQGQCFIQVSNS----YLEN-CFVKHGSKFSETKKNLQVVKGTVV 816
Query: 450 VAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDH 509
+AKNPCLHPGD+R+L AVD P LHH+ DC+VFP KG+RPH NE SGSDLDGD+YFV WD
Sbjct: 817 IAKNPCLHPGDIRILEAVDAPGLHHLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDE 876
Query: 510 ELIPPLQ--FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEP 567
LIPP + + PM Y A K L R + +D+ E+FA + N++LG ICNAHVV ADL
Sbjct: 877 NLIPPSKRSWIPMQYDAAEAKQLTRPVNHQDIVEFFAKNMANENLGAICNAHVVRADLSE 936
Query: 568 DKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKL 627
A +CL LA+L+ AVDF KTG ++PS L+ +IYPDFM K++ Y+S++++G+L
Sbjct: 937 YGALDEKCLTLAELAATAVDFPKTGKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRL 996
Query: 628 YRAVKDIAPPTATIKSFTKEVAMQS--YDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMD 685
YR +KD S YD D+EV G D+I+DA+ K YD +L L+
Sbjct: 997 YRQIKDAYDDDDVAASSELNFVRGDIPYDLDLEVLGATDFISDAWDRKCSYDGQLNGLLA 1056
Query: 686 YYGIKTEAEILSGCIMEMAKSFDKKR-DL-EAIIFAVKSLKKEARAWFNKKN------ES 737
Y +K E E+++G + M K +K+ DL E + + LK+E R F K + +
Sbjct: 1057 QYKVKREEEVVTGHVWSMPKGSSRKQGDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDD 1116
Query: 738 DSSHEDVYAKASAWYHVAYHPSYWGRYKE----EGMNRTHFLSFPWCIHDKLIEIK 789
D + KASAWY V YHP + + E +G + LSF W D L IK
Sbjct: 1117 DEKNMLYERKASAWYQVTYHPHWIQKSLELQDSDGAGISVMLSFAWIAADYLARIK 1172
>gi|297819596|ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
gi|297323519|gb|EFH53940.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
Length = 1197
Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust.
Identities = 327/775 (42%), Positives = 466/775 (60%), Gaps = 52/775 (6%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS----PL 108
+ ++++TP++ Y PE+ LSNRV+R Y + FLR++F+DE + + S VLS P+
Sbjct: 411 IRRLVITPTRAYCLPPEVELSNRVLRKYRAVAERFLRVTFMDESMQTINSNVLSYFVAPI 470
Query: 109 I---SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTA 165
+ +S++ + T +++RV S L +G + +K+ LAFS +Q++D+S W FA +
Sbjct: 471 VKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDSSAWFFAEDGKTRV 530
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI-IPDVEVEDDGITYCFS 224
+DI+ MG F+D KNVAK AAR+G F S+ + V +++ +PD+E Y FS
Sbjct: 531 SDIKAWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPNEVNTELPDIERNG----YVFS 585
Query: 225 DGIGKISAELAEIVAKNCGFTIY-TPSAFQIRYGGYKGVVAVDPTSS--TKLSLRKSMLK 281
DGIG I+ +LA+ V + ++ TP A+QIRY G+KGVVA P+ +L+LR SM K
Sbjct: 586 DGIGTITPDLADEVMEKLKLDLHCTPCAYQIRYAGFKGVVARWPSKGDGIRLALRDSMKK 645
Query: 282 YKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKA 341
+ S+ T L+I + +++QP FLNRQ+ITLLS LG+ D +F Q + +L+ IL D A
Sbjct: 646 FNSKHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVA 705
Query: 342 HEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRA 401
E L S E N +L G+KP EP L ML + R + L LR ++RIF+ +GR
Sbjct: 706 FEVLT-ASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRW 764
Query: 402 MMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSG--------ELGVVEGKVVVAKN 453
+MGCLDE G LE GQ F+Q S + ++N C ++ G +L VV+G V +AKN
Sbjct: 765 LMGCLDEAGKLEHGQCFIQVS----KPSIEN-CFSKHGSRFKETKTDLEVVKGYVAIAKN 819
Query: 454 PCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP 513
PCLHPGD+R+L AVDVP LHHM DC++FP KG RPHTNE SGSDLDGD+YFV WD +LIP
Sbjct: 820 PCLHPGDVRILEAVDVPQLHHMYDCLIFPKKGDRPHTNEASGSDLDGDLYFVAWDQKLIP 879
Query: 514 PLQ--FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKAR 571
P + +P M Y A EK L R + +D+ ++FA + N+ LG ICNAHVVHAD A
Sbjct: 880 PNRKSYPAMHYDAAEEKTLGRAVNHQDIIDFFARNMANEHLGTICNAHVVHADRSEYGAM 939
Query: 572 SNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAV 631
+C+ LA+L+ AVD KTG ++P L+ ++YPDFM K+D Y+S +++G+LYR V
Sbjct: 940 DEECVLLAELAATAVDSPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSSKILGRLYRRV 999
Query: 632 KDIAPPTATIKSFTKEVAMQ-SYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIK 690
K++ A S YD D+E+ GFED I +A+ +K YD +L L+ Y ++
Sbjct: 1000 KEVYDEDAEASSEESSDPSDIPYDIDLEIPGFEDLIPEAWGHKCSYDRQLIGLLGQYKVQ 1059
Query: 691 TEAEILSGCIMEMAKSFDKKR-DL-EAIIFAVKSLKKEARAWFNKKNESDSSHEDVY--- 745
E EI++G I M K KK+ DL E + + SLKKE R F E+ HE++
Sbjct: 1060 KEEEIVTGHIWSMPKYTSKKQCDLKERLKHSYNSLKKEFRKVF---EETILDHEELSEEE 1116
Query: 746 ------AKASAWYHVAYHPSYWGRYKE-----EGMNRTHFLSFPWCIHDKLIEIK 789
KASAWYHV YHP + + E E + LSF W D L +IK
Sbjct: 1117 KNILYEKKASAWYHVTYHPKWVKKSLELQDPDEPSSHAVMLSFAWIAADYLAKIK 1171
>gi|356515444|ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Glycine max]
Length = 1204
Score = 566 bits (1458), Expect = e-158, Method: Compositional matrix adjust.
Identities = 334/811 (41%), Positives = 471/811 (58%), Gaps = 62/811 (7%)
Query: 24 WLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDE 83
WL + Y +S++ LDD ++ V ++++TPSK Y PE+ LSNRV+R + +
Sbjct: 395 WLLRNPKLYQISKQ--------LDD-IVEVRRLVITPSKAYCIPPEVELSNRVLRKFREV 445
Query: 84 IDNFLRLSFVDEDLDKLYSTVL----SPL---ISSTNEERHTTIYERVLSTLRNGIVIGD 136
D FLR++F+DE + + L +P+ I+S + + T IY+RV + L G
Sbjct: 446 SDCFLRVTFMDEGMQTINVNALNYYVAPIVKEITSNSFSQRTKIYKRVKTILEQGFYFCG 505
Query: 137 KKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSR 196
+K+ LAFS++Q++D S W FA ++ DIR MG F +NVAK AAR+GQ F S+
Sbjct: 506 RKYSFLAFSSNQLRDRSAWFFAED-KIRCDDIRNWMGKFNQ-RNVAKCAARMGQCFSSTY 563
Query: 197 EALHVDSSDIE-IIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIR 255
+ V ++++ ++PDVE + Y FSDGIG I+ +LA VA+ PSA+QIR
Sbjct: 564 ATVEVAANEVNSMLPDVERNN----YIFSDGIGVITHDLAREVAEKLKLD-NVPSAYQIR 618
Query: 256 YGGYKGVVAVDPTSS--TKLSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTL 313
Y G+KGVVA P +LSLR SM K++S L+I A +++QP FLNRQ+ITLLS L
Sbjct: 619 YAGFKGVVASWPAKGDGVRLSLRPSMNKFQSTHNILEICAWTRFQPGFLNRQIITLLSAL 678
Query: 314 GIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFL 373
G+ D VF + Q + +L+ +L D A + L S E+ N +L CG+ P EP L
Sbjct: 679 GVPDEVFWQMQEAMLLKLNQMLVDADIAFDVLT-KSCAEHGNAAAIMLSCGFSPLTEPHL 737
Query: 374 LMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNS 433
ML + RA+ L LR ++RIF+ +GR +MG LDE+G LE GQ FVQ S L+N
Sbjct: 738 RGMLTSTRAAQLWGLREKSRIFVSSGRWLMGVLDESGVLEQGQCFVQVSTPS----LEN- 792
Query: 434 CNNRSG-------ELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGK 486
C ++ G L VV+G V++AKNPCLHPGD+RVL AVD P LHH+ DC+VFP KG
Sbjct: 793 CFSKHGSRFSETKNLHVVKGFVIIAKNPCLHPGDVRVLEAVDAPDLHHLNDCLVFPQKGD 852
Query: 487 RPHTNECSGSDLDGDVYFVCWDHELIPPLQ--FPPMDYTPAPEKVLARDMTIEDVEEYFA 544
RPHTNE SGSDLDGD+YFV WD LIPP + + PM+Y P K+ R + D+ E+F
Sbjct: 853 RPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMEYAPQESKLKTRQVMTRDIIEFFV 912
Query: 545 DYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVE 604
+VN+ LG ICNAHVVHAD A +C+ LA+L+ AVDF KTG T+P L+ +
Sbjct: 913 RNMVNEHLGAICNAHVVHADSSDYGALDEKCIHLAELAATAVDFPKTGKLVTMPPHLKPK 972
Query: 605 IYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFED 664
+YPDFM K+ Y S++++G+LYR +KD YD D+EV G D
Sbjct: 973 LYPDFMGKERHQSYRSKKILGRLYRRIKDAYDEDIDAPYLNFVTGDIPYDKDLEVPGSAD 1032
Query: 665 YITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRD--LEAIIFAVKS 722
+I DA++ K YD +L L+ Y +K E E+++G I M K +K+ E + + +
Sbjct: 1033 FIADAWEQKCSYDGQLSGLLGQYKVKREEEVVTGQIWSMPKYNSRKQGELKERLKHSYSA 1092
Query: 723 LKKEARAWFNKKN----ESDSSHEDVY--AKASAWYHVAYHPSYWGR-----------YK 765
LKKE R F K N E ++++ KASAWY V YHP + + +
Sbjct: 1093 LKKEFRHTFEKLNSDVGELSEEEKNLFYEQKASAWYQVTYHPEWVKKSLDLQDKSSENQE 1152
Query: 766 EEGMNRTHFLSFPWCIHDKL--IEIKRGKQR 794
+ + T LSFPW D L +I++ QR
Sbjct: 1153 ADSLGSTVMLSFPWIAVDYLARTKIRQRHQR 1183
>gi|51989472|gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
Length = 1197
Score = 562 bits (1449), Expect = e-157, Method: Compositional matrix adjust.
Identities = 338/803 (42%), Positives = 479/803 (59%), Gaps = 50/803 (6%)
Query: 30 RKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLR 89
+K++L L LDD ++ V ++++TP+K Y P + LSNRV+R+Y D FLR
Sbjct: 391 QKWLLKNPKLLERTGELDD-IVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLR 449
Query: 90 LSFVDEDLDKL--------YSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFET 141
++F+DE + L +T++ + S++N +R T I++RV S L G + +K+
Sbjct: 450 VTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQR-TAIFQRVKSILSRGFHLCGRKYSF 508
Query: 142 LAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHV 201
LAFS +Q++D S W FA P++ I MG F + +NVAK AAR+GQ F S+ + V
Sbjct: 509 LAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSN-RNVAKCAARMGQCFSSTYATVEV 567
Query: 202 DSSDIEI-IPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYK 260
SS++ +PD+E Y FSDGIG ISA+LA VA+ ++ PSA+QIRY G K
Sbjct: 568 PSSEVNSELPDIERNG----YVFSDGIGMISADLALEVAEKLHLSVNPPSAYQIRYAGCK 623
Query: 261 GVVAVDPTSSTK--LSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDH 318
GVVA PT + LSLR SM K+ S T L+I + +++QP FLNRQ++TLLS+L ++D
Sbjct: 624 GVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDG 683
Query: 319 VFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQ 378
+F + Q+E ++ L+ +L D A + + S E N +L G+KP EP L ML
Sbjct: 684 IFWEMQKEMISGLNKMLVDSDVAFDVIT-ASCAEAGNTAAIMLSAGFKPQSEPHLRGMLS 742
Query: 379 TFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRS 438
+ RAS L +LR + RIF+ +GR +MGCLDE G LE GQ F+Q S+ L+N C +
Sbjct: 743 SIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPS----LEN-CFIKH 797
Query: 439 G--------ELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHT 490
G L VV+G VV+AKNPCLHPGD+R+L AVDVP LHH+ DC+VFP KG RPH+
Sbjct: 798 GPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHS 857
Query: 491 NECSGSDLDGDVYFVCWDHELIPPLQ--FPPMDYTPAPEKVLARDMTIEDVEEYFADYIV 548
NE SGSDLDGD+YFV WD LIPP + + PM+Y PA K L R + D+ ++F+ +V
Sbjct: 858 NEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMV 917
Query: 549 NDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPD 608
+SLG ICNAHVVHADL A +CL+LA+L+ +AVDF KTG T+P L+ ++YPD
Sbjct: 918 QESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPD 977
Query: 609 FMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQ-SYDTDMEVDGFEDYIT 667
FM K++ Y+S++++GKLYR VKD+ + + + V YD+ +E+ G ++
Sbjct: 978 FMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPNDIPYDSSLEIPGSTVFMG 1037
Query: 668 DAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRD--LEAIIFAVKSLKK 725
DA+ K YD +L L+ Y + E E+++G I M K KK+ E + A L+K
Sbjct: 1038 DAWNCKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAYNMLRK 1097
Query: 726 EARAWFNK-----KNESDSSHEDVYA-KASAWYHVAYHPSYWGRYKE----EGMNRTHFL 775
E R F + D D+Y KASAWY V Y+P + R E + ++ T L
Sbjct: 1098 EFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWVARSLELQLPDAVSSTVML 1157
Query: 776 SFPWCIHDKLIEIK---RGKQRS 795
SF W D L I RG Q S
Sbjct: 1158 SFAWIAADYLARINIRHRGLQYS 1180
>gi|242080895|ref|XP_002445216.1| hypothetical protein SORBIDRAFT_07g006150 [Sorghum bicolor]
gi|241941566|gb|EES14711.1| hypothetical protein SORBIDRAFT_07g006150 [Sorghum bicolor]
Length = 1220
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 326/775 (42%), Positives = 459/775 (59%), Gaps = 44/775 (5%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS----PL 108
V ++++TP++ Y P++ SNRV+R Y D FLR++F+DE + L + LS P+
Sbjct: 454 VRRLVITPTRAYCMPPQVERSNRVIRHYHHVADRFLRVTFMDEGMQLLNNNALSFHAAPI 513
Query: 109 ISSTNE---ERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTA 165
+ S + T IY RV + + G + +K+ LAFS++Q+KD S W FA TA
Sbjct: 514 VQSMMSKLFQHKTRIYRRVHTLMTKGFHLCGRKYSFLAFSSNQMKDRSAWFFAEEGTTTA 573
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDI-EIIPDVEVEDDGITYCFS 224
A IRE MG F +NVAK+AAR+G F SS + +++ E++ D+E Y FS
Sbjct: 574 ATIREWMGQFPS-RNVAKHAARMGLCFTSSYATVVTRPNEVNELLEDIERNG----YNFS 628
Query: 225 DGIGKISAELA-EIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP--TSSTKLSLRKSMLK 281
DGIGKI+ +LA E+ A+ Y PSA+QIRY G+KGV+AV P +LSLR SM K
Sbjct: 629 DGIGKITPDLAIEVAARLPLIDRYPPSAYQIRYAGFKGVIAVWPGQNDGIRLSLRPSMRK 688
Query: 282 YKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKA 341
++S + +++++ +K+QP FLNRQ+I LL +LG+ + +F + Q + LD IL+D A
Sbjct: 689 FESTHSVIEVVSWTKFQPAFLNRQIIILLMSLGVPEAIFWEMQEAMLKNLDRILSDREIA 748
Query: 342 HEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRA 401
++ + S E + + +L G+ P EP L ML ++S L L +T+IF+ GR
Sbjct: 749 YKVVT-NSCPERGTIARLMLSAGFSPATEPHLKAMLLAIKSSQLKGLLKKTKIFVPKGRW 807
Query: 402 MMGCLDETGTLESGQVFVQCSA-SRRREFLDNSCNNRSGELGVVE--GKVVVAKNPCLHP 458
+MGCLDE G LE GQ F+Q S+ S F+ + S V G VVVAKNPCLHP
Sbjct: 808 LMGCLDELGILEQGQCFIQASSLSINNHFMKHGSRFSSANKNAVTIVGTVVVAKNPCLHP 867
Query: 459 GDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ-- 516
GD+RVL AVDVP LHH+VDC+VFP KG+RPH NE SGSDLDGDVYFV WD L+PP +
Sbjct: 868 GDVRVLEAVDVPELHHLVDCLVFPKKGERPHPNEASGSDLDGDVYFVTWDKNLVPPGKRS 927
Query: 517 FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCL 576
+ MDY+PA K L R + D+ ++F + ++++G I NAHVVHAD+ A +C+
Sbjct: 928 WKAMDYSPAEAKQLQRRVLQHDLIDFFLKNMASENIGRISNAHVVHADISEYGAMDEKCI 987
Query: 577 ELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVK--DI 634
+LA+L+ AVDF KTG +P LR YPDFMEK D Y+S+++IGKLYR V+ +
Sbjct: 988 QLAELAATAVDFPKTGKIVRMPPSLRPTKYPDFMEKDDAISYKSEKIIGKLYRTVRYYIL 1047
Query: 635 APPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAE 694
P ++S K+ M +YD D+EV G + DA+++K Y++RL L++ Y TEAE
Sbjct: 1048 GMP---LESLIKD-GMPAYDIDLEVPGASHFFLDAWQWKCAYESRLNALLNQYSGCTEAE 1103
Query: 695 ILSGCIMEMAKSFDKKRDL--EAIIFAVKSLKKEARAWF-----NKKNESDSSHEDVY-A 746
+++G I +A +K+ E A L +E R F ++ SD VY
Sbjct: 1104 LVTGVIWSLADGRKRKKHEANEKFSHAYPELHQEFRRVFENIAADQDRMSDEKKNLVYEM 1163
Query: 747 KASAWYHVAYHPSYWGRYKEE----GMNRTHFLSFPWCIHDKLIEIK---RGKQR 794
KASAWY V YHP W R+ E G R LSFPW D L IK RG+ +
Sbjct: 1164 KASAWYQVTYHPE-WIRFSREKEPHGEERPARLSFPWIAIDYLACIKMRCRGQAK 1217
>gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
Length = 1197
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 338/828 (40%), Positives = 484/828 (58%), Gaps = 59/828 (7%)
Query: 7 ALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFS 66
AL+ +F + + +R L +K++ + L LDD ++ V ++++TP+K Y
Sbjct: 369 ALKHIFSYKRPVNDAIRKLA-SVQKWLFNNPNLLERTGQLDD-VVEVRRLVITPTKAYCL 426
Query: 67 GPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS--------PLISSTNEERHT 118
P + LSNRV+R Y D FLR++F+DE + L L+ + SS+N +R T
Sbjct: 427 PPTVELSNRVLRKYKHISDRFLRVTFMDEGMRNLNRNALTYYAANIVREITSSSNPQR-T 485
Query: 119 TIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDI 178
I++RV + G + +++ LAFS +Q++D S W FA PE+ I MG F +
Sbjct: 486 GIFQRVKIIVNKGFYLCGRRYSFLAFSANQLRDRSAWFFAETPEIRVTSIINWMGKFGN- 544
Query: 179 KNVAKYAARLGQSFGSSREALHVDSSDIEI-IPDVEVEDDGITYCFSDGIGKISAELAEI 237
+NVAK AAR+GQ F S+ + V S++ +PD+E Y FSDGIG ++A+L+
Sbjct: 545 RNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIERNG----YVFSDGIGMMTADLSIE 600
Query: 238 VAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTS--STKLSLRKSMLKYKSESTSLDILANS 295
VA ++ P A+QIRY G KGVVA P +LSLR SM K+ S T L+I + +
Sbjct: 601 VAAKLQLSVNPPCAYQIRYAGCKGVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICSWT 660
Query: 296 KYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTN 355
+ QP FLNRQ+ITLLS+L ++D +F + Q+E +++LD IL D A + + S E N
Sbjct: 661 RLQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVIT-ASCAEAGN 719
Query: 356 VLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESG 415
+L G+KP EP L ML + RA+ L +LR +TR+F+ +GR +MGCLDE G LE G
Sbjct: 720 TAAIMLSAGFKPQSEPHLRGMLASIRAAQLGDLRNKTRMFVTSGRWLMGCLDELGELEQG 779
Query: 416 QVFVQCSASRRREFLDNSCNNRSG--------ELGVVEGKVVVAKNPCLHPGDMRVLRAV 467
Q F+Q S+ +C + G L VV+G VV+AKNPCLHPGD+R+L AV
Sbjct: 780 QCFIQVSSPSLE-----TCFVKHGPEFSEIKKNLQVVKGLVVIAKNPCLHPGDVRILEAV 834
Query: 468 DVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ--FPPMDYTPA 525
DVP LHH+ DC+VFP KG RPH+NE SGSDLDGD+YFV WD LIPP + + PM Y PA
Sbjct: 835 DVPGLHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWMPMAYAPA 894
Query: 526 PEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIA 585
K L R + D+ ++F +V +SLG ICNAHVVHADL A +CL+LA+L+ +A
Sbjct: 895 EAKQLGRQVQHTDIIDFFLKNMVQESLGEICNAHVVHADLSEFGAMDEKCLKLAELAALA 954
Query: 586 VDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDI----APPTATI 641
VDF KTG T+P L+ ++YPDFM K+ YES++++GKLYR V D+ ++ +
Sbjct: 955 VDFPKTGKLVTMPFDLKPKMYPDFMGKEPFQSYESKKILGKLYRQVIDVYDAEGGESSGL 1014
Query: 642 KSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIM 701
+ K++ YDT++E+ G+ED+I DA+ +K YD +L L+ Y + E E+++G I
Sbjct: 1015 EYVPKDIP---YDTNLEIPGYEDFIDDAWNHKCSYDGQLNGLLGQYKVNGEEEVVTGHIW 1071
Query: 702 EMAKSFDKKRD--LEAIIFAVKSLKKEARAWFNKKNESD------SSHEDVYA-KASAWY 752
M K KK+ E + A L+KE R F ++ E D D+Y KA AWY
Sbjct: 1072 SMPKYSAKKQGELKERLKHAYNMLRKEFRNVF-EQMEPDFDLLPIDEKNDMYERKAFAWY 1130
Query: 753 HVAYHPSYWGRYKE----EGMNRTHFLSFPWCIHDKLIEIK---RGKQ 793
V YHP + R E + ++ LSF W D + IK RG Q
Sbjct: 1131 RVTYHPHWVTRSLELQLPDAVSNGVMLSFAWIAADYIARIKIRQRGMQ 1178
>gi|206598331|gb|ACI16098.1| RNA-directed RNA polymerase 6a [Hordeum vulgare]
Length = 1047
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 320/778 (41%), Positives = 467/778 (60%), Gaps = 52/778 (6%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS------ 106
V ++++TP+ Y P++ SNRVVR Y D D FL+++F+DE + +L S VL+
Sbjct: 255 VRRLVITPTTAYCLPPQVERSNRVVRHYRDAADRFLKVTFMDEGMQQLNSNVLNFSAAQI 314
Query: 107 --PLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA---SRP 161
L+S++ + TT+Y+RV + L G + +K+ LAFS++Q++D S W FA +
Sbjct: 315 VKDLMSNSFLQHKTTVYKRVKTFLTEGFHMCGRKYSFLAFSSNQLRDRSAWFFAEDRTDR 374
Query: 162 ELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDI-EIIPDVEVEDDGIT 220
T IR+ MG F KNVAK+ AR+GQ F S+ + + ++ E + DVE
Sbjct: 375 TRTVESIRKWMGRFTS-KNVAKHTARMGQCFSSTYATVVMHPHEVNECLEDVERNG---- 429
Query: 221 YCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAV--DPTSSTKLSLRKS 278
Y FSDGIGKI+ ELA VAK T PSA+QIRY G+KGV+AV +LSLR S
Sbjct: 430 YVFSDGIGKITQELALEVAKKLQLTDNPPSAYQIRYAGFKGVIAVWEGENDGIQLSLRPS 489
Query: 279 MLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDP 338
M K++S T L++++ +K+QP FLNRQ+ITLLS+L + D +F + Q++ ++ L+ ILTD
Sbjct: 490 MHKFESPHTVLEVVSWTKFQPGFLNRQIITLLSSLNVPDAIFSQMQKDMLSNLNNILTDT 549
Query: 339 LKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQN 398
A + + S + N +L G P EP L +L R++ LL L ++RIF+
Sbjct: 550 DVAFDVVT-TSCADEGNTAALMLSAGILPGTEPHLKALLLAIRSTQLLGLLEKSRIFVPK 608
Query: 399 GRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSC-------NNRSGELGVVEGKVVVA 451
GR +MGCLDE G LE GQ F++ S+ L+NS ++ + + G VV+A
Sbjct: 609 GRWLMGCLDELGILEQGQCFIRASSP----VLNNSLVKHGPRFSSANNNAETIVGTVVMA 664
Query: 452 KNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHEL 511
KNPCLHPGD+R+L A+DVP+LHH+VDC+VFP G+RPH NE SGSDLDGD+YFV WD +L
Sbjct: 665 KNPCLHPGDVRILEAIDVPALHHLVDCLVFPKNGERPHANEASGSDLDGDLYFVTWDEKL 724
Query: 512 IPPLQ--FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDK 569
IPP + + PMDY+PA K L R +T D+ ++F +VN+ LG I NAHVVHAD+
Sbjct: 725 IPPGKKSWNPMDYSPAEAKQLPRQVTQSDIVDFFLKNMVNEKLGPISNAHVVHADMSEYG 784
Query: 570 ARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYR 629
A +C++LA+L+ AVDF KTG ++P LR ++YPDFM K D Y+S++++G+LYR
Sbjct: 785 AMDEKCIQLAELAAFAVDFPKTGKIVSMPPALRPKLYPDFMGKDDAISYKSEKILGRLYR 844
Query: 630 AVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGI 689
++++ A + + T + YDTDMEV G D+++ A++ K Y+ +L L+ YG+
Sbjct: 845 SIQE-ASSSDLVPEETCTLNDLPYDTDMEVPGAADFLSSAWQCKCSYEAQLDALLKQYGV 903
Query: 690 KTEAEILSGCIMEMAKSFDKKR-DL-EAIIFAVKSLKKEARAWFNKKNE---------SD 738
+TEAE+++ I + K +K+ D+ E + A +L+KE RA F D
Sbjct: 904 RTEAELVTEHIWSLPKYNSRKQGDIKERLKNAYSALRKEYRAIFESVEAPGQAKAVALDD 963
Query: 739 SSHEDVY-AKASAWYHVAYHPSYWGRYKEEGM------NRTHFLSFPWCIHDKLIEIK 789
VY KASAWY V YHP + R +E + + LSF W + L IK
Sbjct: 964 DERNRVYEMKASAWYQVTYHPKWVERSREALLEPDREEDTPARLSFAWIPVEHLARIK 1021
>gi|15229153|ref|NP_190519.1| RNA-dependent RNA polymerase 6 [Arabidopsis thaliana]
gi|75337188|sp|Q9SG02.1|RDR6_ARATH RecName: Full=RNA-dependent RNA polymerase 6; Short=AtRDRP6; AltName:
Full=Protein SILENCING DEFECTIVE 1; AltName: Full=Protein
SUPPRESSOR OF GENE SILENCING 2; AltName:
Full=RNA-directed RNA polymerase 6
gi|12324444|gb|AAG52184.1|AC012329_11 putative RNA-directed RNA polymerase; 73997-69985 [Arabidopsis
thaliana]
gi|6899955|emb|CAB71285.1| RNA-directed RNA polymerase-like protein [Arabidopsis thaliana]
gi|8164028|gb|AAF73959.1| SGS2 [Arabidopsis thaliana]
gi|332645029|gb|AEE78550.1| RNA-dependent RNA polymerase 6 [Arabidopsis thaliana]
Length = 1196
Score = 556 bits (1434), Expect = e-155, Method: Compositional matrix adjust.
Identities = 326/771 (42%), Positives = 467/771 (60%), Gaps = 45/771 (5%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS----PL 108
+ ++++TP++ Y PE+ LSNRV+R Y + FLR++F+DE + + S VLS P+
Sbjct: 411 IRRLVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPI 470
Query: 109 I---SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTA 165
+ +S++ + T +++RV S L +G + +K+ LAFS +Q++D S W FA +
Sbjct: 471 VKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRV 530
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI-IPDVEVEDDGITYCFS 224
+DI+ MG F+D KNVAK AAR+G F S+ + V +++ +PD+E Y FS
Sbjct: 531 SDIKTWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNG----YVFS 585
Query: 225 DGIGKISAELAEIVAKNCGFTI-YTPSAFQIRYGGYKGVVAVDPTSS--TKLSLRKSMLK 281
DGIG I+ +LA+ V + + Y+P A+QIRY G+KGVVA P+ S +L+LR SM K
Sbjct: 586 DGIGTITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKK 645
Query: 282 YKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKA 341
+ S+ T L+I + +++QP FLNRQ+ITLLS LG+ D +F Q + +L+ IL D A
Sbjct: 646 FFSKHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVA 705
Query: 342 HEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRA 401
E L S E N +L G+KP EP L ML + R + L LR ++RIF+ +GR
Sbjct: 706 FEVLT-ASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRW 764
Query: 402 MMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSG--------ELGVVEGKVVVAKN 453
+MGCLDE G LE GQ F+Q S + ++N C ++ G +L VV+G V +AKN
Sbjct: 765 LMGCLDEAGILEHGQCFIQVS----KPSIEN-CFSKHGSRFKETKTDLEVVKGYVAIAKN 819
Query: 454 PCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP 513
PCLHPGD+R+L AVDVP LHHM DC++FP KG RPHTNE SGSDLDGD+YFV WD +LIP
Sbjct: 820 PCLHPGDVRILEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIP 879
Query: 514 PLQ--FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKAR 571
P + +P M Y A EK L R + +D+ ++FA + N+ LG ICNAHVVHAD A
Sbjct: 880 PNRKSYPAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAM 939
Query: 572 SNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAV 631
+CL LA+L+ AVDF KTG ++P L+ ++YPDFM K+D Y+S +++G+LYR V
Sbjct: 940 DEECLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRV 999
Query: 632 KDIAPPTATIKS-FTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIK 690
K++ A S + + + YD +E+ GFED I +A+ +K YD +L L+ Y ++
Sbjct: 1000 KEVYDEDAEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQ 1059
Query: 691 TEAEILSGCIMEMAKSFDKKRD--LEAIIFAVKSLKKEARAWF-----NKKNESDSSHED 743
E EI++G I M K KK+ E + + SLKKE R F + +N S+
Sbjct: 1060 KEEEIVTGHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNI 1119
Query: 744 VY-AKASAWYHVAYHPSYWGRYKE----EGMNRTHFLSFPWCIHDKLIEIK 789
+Y KASAWYHV YHP + + E + + LSF W D L IK
Sbjct: 1120 LYEKKASAWYHVTYHPEWVKKSLELQDPDESSHAAMLSFAWIAADYLARIK 1170
>gi|8248473|gb|AAF74208.1|AF268093_1 RNA-dependent RNA polymerase [Arabidopsis thaliana]
Length = 1196
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 326/771 (42%), Positives = 464/771 (60%), Gaps = 45/771 (5%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS----PL 108
+ ++++TP++ Y PE+ LSNRV+R Y + FLR++F+DE + + S VLS P+
Sbjct: 411 IRRLVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPI 470
Query: 109 I---SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTA 165
+ +S++ + T +++RV S L +G + +K+ LAFS +Q++D S W FA +
Sbjct: 471 VKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRV 530
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI-IPDVEVEDDGITYCFS 224
+DI+ MG F+D KNVAK AAR+G F S+ + V +++ +PD+E Y FS
Sbjct: 531 SDIKTWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNG----YVFS 585
Query: 225 DGIGKISAELAEIVAKNCGFTI-YTPSAFQIRYGGYKGVVAVDPTSS--TKLSLRKSMLK 281
DGIG I+ +LA V + + Y+P A+QIRY G+KGVVA P+ S +L+LR SM K
Sbjct: 586 DGIGTITPDLAGEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKK 645
Query: 282 YKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKA 341
S+ T L+I + +++QP FLNRQ+ITLLS LG+ +F Q + +LD IL D A
Sbjct: 646 IFSKHTILEICSWTRFQPGFLNRQIITLLSVLGVPVEIFWDMQESMLYKLDRILVDTDVA 705
Query: 342 HEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRA 401
E L S E N +L G+KP EP L ML + R + L LR ++RIF+ +GR
Sbjct: 706 FEVLT-ASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRW 764
Query: 402 MMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSG--------ELGVVEGKVVVAKN 453
+MGCLDE G LE GQ F+Q S + ++N C ++ G +L VV+G V +AKN
Sbjct: 765 LMGCLDEAGILEHGQCFIQVS----KPSIEN-CFSKHGSRFKETKKDLEVVKGYVAIAKN 819
Query: 454 PCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP 513
PCLHPGD+R+L AVDVP LHHM DC++FP KG RPHTNE SGSDLDGD+YFV WD +LIP
Sbjct: 820 PCLHPGDVRILEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIP 879
Query: 514 PLQ--FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKAR 571
P + +P M Y A EK L R + +D+ ++FA + N+ LG ICNAHVVHAD A
Sbjct: 880 PNRKSYPAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAM 939
Query: 572 SNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAV 631
+CL LA+L+ AVDF KTG ++P L+ ++YPDFM K+D Y+S +++G+LYR V
Sbjct: 940 DEECLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRPV 999
Query: 632 KDIAPPTATIKS-FTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIK 690
K++ A S + + + YD +E+ GFED I +A+ +K YD +L L+ Y ++
Sbjct: 1000 KEVYDEDAEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCSYDGQLIGLLGQYKVQ 1059
Query: 691 TEAEILSGCIMEMAKSFDKKRD--LEAIIFAVKSLKKEARAWF-----NKKNESDSSHED 743
E EI++G I M K KK+ E + + SLKKE R F + +N S+
Sbjct: 1060 KEEEIVTGHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNI 1119
Query: 744 VY-AKASAWYHVAYHPSYWGRYKE----EGMNRTHFLSFPWCIHDKLIEIK 789
+Y KASAWYHV YHP + + E + + LSF W D L IK
Sbjct: 1120 LYEKKASAWYHVTYHPEWVKKSLELQDPDESSHAAMLSFAWIAADYLARIK 1170
>gi|242057591|ref|XP_002457941.1| hypothetical protein SORBIDRAFT_03g022880 [Sorghum bicolor]
gi|241929916|gb|EES03061.1| hypothetical protein SORBIDRAFT_03g022880 [Sorghum bicolor]
Length = 1207
Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust.
Identities = 321/768 (41%), Positives = 464/768 (60%), Gaps = 42/768 (5%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS------ 106
V +++VTP+K Y PE+ SNRV+R Y + D FLR++F+DE + L S VL+
Sbjct: 425 VRRLVVTPTKAYCLPPEVERSNRVIRHYREVTDRFLRVTFMDEGMQLLNSNVLNFSAAQI 484
Query: 107 --PLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELT 164
L+S++ + TT+Y+R+ + L G + +K+ LAFS++Q++D S W FA T
Sbjct: 485 VKDLMSNSFLHK-TTVYKRIKTFLTEGFHMCGRKYSFLAFSSNQLRDRSAWFFAEDRMRT 543
Query: 165 AADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFS 224
IR+ MG F KNVAK+AAR+GQ F S+ + + ++ + EVE +G Y FS
Sbjct: 544 VETIRKWMGRFTS-KNVAKHAARMGQCFSSTYATVVMQPHEVNECLE-EVERNG--YIFS 599
Query: 225 DGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAV--DPTSSTKLSLRKSMLKY 282
DGIGKI+ +LA VA+ T PSA+QIRY G+KGV+AV +LSLR SM K+
Sbjct: 600 DGIGKITCDLALEVAQKLRLTDNPPSAYQIRYAGFKGVIAVWEGENDGIRLSLRPSMHKF 659
Query: 283 KSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAH 342
+S L++++ +K+QP FLNRQ+ITLLS+L + D +F + Q ++ L+ IL+D A
Sbjct: 660 ESNHNVLEVVSWTKFQPGFLNRQIITLLSSLNVPDAIFSQMQEAMLSNLNNILSDTDVAF 719
Query: 343 EALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAM 402
+ + S E N +L G P EP L ML R+S LL L +TRIF+ GR +
Sbjct: 720 DIVT-TSCAEQGNTAALMLSAGISPGTEPHLKAMLLAIRSSQLLGLLEKTRIFVPKGRWL 778
Query: 403 MGCLDETGTLESGQVFVQCSASRRREFLDN-----SCNNRSGELGVVEGKVVVAKNPCLH 457
MGCLDE G LE GQ F++ S+ L S N++ E + G +V+AKNPCLH
Sbjct: 779 MGCLDELGILEQGQCFIRASSPSLNNCLVKHGPRFSSANKNAE--TIVGTIVMAKNPCLH 836
Query: 458 PGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ- 516
PGD+R+L AVDVP LHH+VDC+VFP KG+RPH NE SGSDLDGD+YFV WD LIPP +
Sbjct: 837 PGDVRILEAVDVPELHHLVDCLVFPKKGERPHANEASGSDLDGDLYFVTWDENLIPPGKK 896
Query: 517 -FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQC 575
+ PMDY+P K L R ++ D+ ++F +VN+ LG I NAHVVHAD+ A +C
Sbjct: 897 SWNPMDYSPTEAKQLPRAVSPHDIVDFFLKNMVNEKLGPISNAHVVHADMSEYGAMDEKC 956
Query: 576 LELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIA 635
++LA+L+ AVDF KTG ++P LR ++YPDFM K+D Y+S++++G+LYR++++ A
Sbjct: 957 IQLAELAATAVDFPKTGKIVSMPPSLRPKLYPDFMGKEDAISYKSEKILGRLYRSIQE-A 1015
Query: 636 PPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEI 695
+ T + YD DMEV G D+++ A++ K Y+ +L L++ YG++TEAE+
Sbjct: 1016 SSGDLVPEETCTLNDLPYDADMEVPGATDFLSSAWECKCSYETQLNALLNQYGVRTEAEL 1075
Query: 696 LSGCIMEMAK-SFDKKRDL-EAIIFAVKSLKKEARAWF-----NKKNESDSSHEDVY-AK 747
++ I + K S K+ D+ E + A +L K+ R+ F ++ SD Y K
Sbjct: 1076 VTEHIWSLPKYSSRKQGDIKERLKNAYSALHKDFRSIFESFVTDQTEISDDEKIRFYEMK 1135
Query: 748 ASAWYHVAYHPSYWGRYKEEGMNRTHF------LSFPWCIHDKLIEIK 789
ASAWY V YHP + + +E M + F LSF W + L IK
Sbjct: 1136 ASAWYQVTYHPKWVQKSRE--MLKPDFEDMPARLSFAWIGVEHLARIK 1181
>gi|297737619|emb|CBI26820.3| unnamed protein product [Vitis vinifera]
Length = 919
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 270/410 (65%), Positives = 308/410 (75%), Gaps = 37/410 (9%)
Query: 384 NLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGV 443
+LLELRT+TRIF+ NG S S F +
Sbjct: 524 DLLELRTKTRIFVPNG----------------------SGSHHDNF-------------I 548
Query: 444 VEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVY 503
+EGK+VVAKNPCLHPGD+RVL AV+VP+LHHMVDCVVFP KGKRPH NECSGSDLDGD+Y
Sbjct: 549 LEGKIVVAKNPCLHPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIY 608
Query: 504 FVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHA 563
FVCWD +LIPP Q PMDYTPAP KVL D+ IE+VEEYF +YIVNDSLG+I NAH V A
Sbjct: 609 FVCWDRDLIPPQQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFA 668
Query: 564 DLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRV 623
D E DKA + C ELAKL +IAVDF KTGV A IP LRV+ YPDFMEK DK YESQ V
Sbjct: 669 DKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSV 728
Query: 624 IGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNL 683
IGKL+R VKDIAP I+SFT++VA QSYD DMEV GFEDY++DAF YK+EYD +LGNL
Sbjct: 729 IGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNL 788
Query: 684 MDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAVKSLKKEARAWFNK-KNESDSSHE 742
MDYYGIKTE+EILSG IM M+KSFD+++D EAI AVKSL+KEAR WFNK +E+DS +
Sbjct: 789 MDYYGIKTESEILSGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEAD 848
Query: 743 DVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIKRGK 792
DVYAKASAWYHV YHP YWG Y EGM+R HFLSFPWC++DKLI KR K
Sbjct: 849 DVYAKASAWYHVTYHPDYWGCYN-EGMDRDHFLSFPWCVYDKLIHTKRKK 897
Score = 327 bits (837), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 170/292 (58%), Positives = 205/292 (70%), Gaps = 36/292 (12%)
Query: 1 MEYIEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTP 60
+ +IEHALE L+HL+ECCYEPVRWL EQYR YV + SPA++LD GL+YV +V +TP
Sbjct: 271 ISFIEHALEKLYHLKECCYEPVRWLSEQYRTYV-KKPVAGSPAISLDTGLVYVRRVQITP 329
Query: 61 SKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTI 120
E+L+K++STV+SP +S E R T +
Sbjct: 330 Y---------------------------------ENLEKIHSTVISPRMS--KEGRRTGV 354
Query: 121 YERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKN 180
Y R+LS L+NGIVIGDKKF+ LAFS+SQ++DNS WMFASRP LTAA+IR MGDF I+N
Sbjct: 355 YRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPGLTAAEIRSWMGDFSQIRN 414
Query: 181 VAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAK 240
VAKYAARLGQSF SS+E L V +IE IPD+E+ TY FSDGIGKIS +LA VA
Sbjct: 415 VAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYVFSDGIGKISPQLAHRVAI 474
Query: 241 NCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDIL 292
CG TPSAFQIRYGGYKGVVAVDPTSS KLSLRKSM KY+S++T+LD+L
Sbjct: 475 KCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESDNTNLDLL 526
>gi|168067479|ref|XP_001785643.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
gi|162662723|gb|EDQ49541.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
Length = 1049
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 330/785 (42%), Positives = 453/785 (57%), Gaps = 48/785 (6%)
Query: 45 ALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTV 104
AL G I + +VL TP++ + P +S SNRV+R Y D FLR+SFVDEDL ++
Sbjct: 272 ALAFGSILMYRVLFTPTRGICTLPVVSRSNRVLRHYHTLSDRFLRVSFVDEDLHQISPGS 331
Query: 105 LS-PL------ISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMF 157
L+ P+ +SST E T I+ R+L + NG + +++ LAFS+SQ++ S W F
Sbjct: 332 LTVPVSRSVRCLSSTYEYNRTEIHRRILDIVENGFKLCGRQYSFLAFSSSQMRGGSAWFF 391
Query: 158 ASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDD 217
AS + IR+ MG F +NVAKYAAR+GQ F S L V + + +PDV
Sbjct: 392 ASTGNVNTHLIRQWMGKFPS-QNVAKYAARMGQCFSCSFPTLPVLKAMVRKLPDVVRNG- 449
Query: 218 GITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSS--TKLSL 275
Y FSDG G I+ + A V+ + YTPS +QIRY GYKGVV+ P + L L
Sbjct: 450 ---YIFSDGCGMIAPDFALRVSLSLKLD-YTPSVYQIRYAGYKGVVSTWPIPGRHSHLGL 505
Query: 276 RKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAIL 335
R SM K++S T L+++ SKY PC+LNRQ+I LLSTL + + VF+ Q VA+L A+L
Sbjct: 506 RDSMKKFESGHTELEVVNWSKYLPCYLNRQIICLLSTLKVENAVFKSLQDAQVARLKAML 565
Query: 336 TDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIF 395
DP +A+E + S ++ + +L G+ P EP L +L + + S L +L ++ RIF
Sbjct: 566 GDPNQAYEIVT-TSCSDSHSTAATMLRGGFLPLKEPHLYELLVSIKFSLLEDLVSKARIF 624
Query: 396 IQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNN--RSGELGVVEGKVVVAKN 453
+ NGR ++GC+DETG L GQ F+ S + L NN SG L V+ GKV++ KN
Sbjct: 625 VPNGRWVIGCMDETGLLNYGQCFIHVSGPVSKACLGGDGNNLGHSGLLQVITGKVIMVKN 684
Query: 454 PCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP 513
PCLHPGD+R+L AVD+P LH MVDC+V P G RPH NE SGSDLDGDVYF CWD LIP
Sbjct: 685 PCLHPGDIRILEAVDLPELHSMVDCLVLPQNGPRPHPNEVSGSDLDGDVYFTCWDPNLIP 744
Query: 514 PL--QFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKAR 571
P + PM+Y K+L R I+DV+ +F + ++ND LG I NAHV AD P+ A
Sbjct: 745 PSGESWEPMEYAAHDSKILYRPANIKDVKNFFVNSMMNDKLGFISNAHVARADKSPEGAL 804
Query: 572 SNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAV 631
+ CL LA L++IAVDF KTG AT+P LRV +PDFMEK+ Y+S +VIG+LYR+V
Sbjct: 805 DSDCLRLAHLASIAVDFPKTGKNATMPHDLRVNEWPDFMEKEGAVTYQSNKVIGELYRSV 864
Query: 632 -KDIAPPTATIKSFTKEVAMQS-YDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGI 689
K + + V + S YD D++V G+E Y+ DA+ K YD +L +M ++ +
Sbjct: 865 TKFLKAEVEQHQHADNAVDLDSIYDYDLQVPGYEVYLDDAWTKKISYDRQLRCMMTHFNV 924
Query: 690 KTEAEILSGCIMEMA---KSFDKKRDLEAIIFAVKSLKKEARAWFN--KKN--------- 735
+ EA +++ + + +S ++ R +A + L +E RA F KK
Sbjct: 925 QREAALIASWLKRGSPGLRSVNRNRG-DAFAQSYGVLYEEFRAQFEGLKKGLDPDGYSED 983
Query: 736 --ESDSSH----EDVYAKASAWYHVAYHPSYWGRYKEEGMNRTH-----FLSFPWCIHDK 784
ES SS D AKASAWYHV YHP + + E N LSFPW
Sbjct: 984 MVESSSSEIKGPTDFAAKASAWYHVTYHPEWKQKALEIFENSGESSPRPLLSFPWITASV 1043
Query: 785 LIEIK 789
L IK
Sbjct: 1044 LSNIK 1048
>gi|106733035|gb|ABF82437.1| putative RNA-dependent RNA polymerase 6 [Physcomitrella patens subsp.
patens]
gi|106733051|gb|ABF82438.1| putative RNA-dependent RNA polymerase 6 [Physcomitrella patens subsp.
patens]
Length = 1152
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 330/785 (42%), Positives = 453/785 (57%), Gaps = 48/785 (6%)
Query: 45 ALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTV 104
AL G I + +VL TP++ + P +S SNRV+R Y D FLR+SFVDEDL ++
Sbjct: 365 ALAFGSILMYRVLFTPTRGICTLPVVSRSNRVLRHYHTLSDRFLRVSFVDEDLHQISPGS 424
Query: 105 LS-PL------ISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMF 157
L+ P+ +SST E T I+ R+L + NG + +++ LAFS+SQ++ S W F
Sbjct: 425 LTVPVSRSVRCLSSTYEYNRTEIHRRILDIVENGFKLCGRQYSFLAFSSSQMRGGSAWFF 484
Query: 158 ASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDD 217
AS + IR+ MG F +NVAKYAAR+GQ F S L V + + +PDV
Sbjct: 485 ASTGNVNTHLIRQWMGKFPS-QNVAKYAARMGQCFSCSFPTLPVLKAMVRKLPDVVRNG- 542
Query: 218 GITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSS--TKLSL 275
Y FSDG G I+ + A V+ + YTPS +QIRY GYKGVV+ P + L L
Sbjct: 543 ---YIFSDGCGMIAPDFALRVSLSLKLD-YTPSVYQIRYAGYKGVVSTWPIPGRHSHLGL 598
Query: 276 RKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAIL 335
R SM K++S T L+++ SKY PC+LNRQ+I LLSTL + + VF+ Q VA+L A+L
Sbjct: 599 RDSMKKFESGHTELEVVNWSKYLPCYLNRQIICLLSTLKVENAVFKSLQDAQVARLKAML 658
Query: 336 TDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIF 395
DP +A+E + S ++ + +L G+ P EP L +L + + S L +L ++ RIF
Sbjct: 659 GDPNQAYEIVT-TSCSDSHSTAATMLRGGFLPLKEPHLYELLVSIKFSLLEDLVSKARIF 717
Query: 396 IQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNN--RSGELGVVEGKVVVAKN 453
+ NGR ++GC+DETG L GQ F+ S + L NN SG L V+ GKV++ KN
Sbjct: 718 VPNGRWVIGCMDETGLLNYGQCFIHVSGPVSKACLGGDGNNLGHSGLLQVITGKVIMVKN 777
Query: 454 PCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP 513
PCLHPGD+R+L AVD+P LH MVDC+V P G RPH NE SGSDLDGDVYF CWD LIP
Sbjct: 778 PCLHPGDIRILEAVDLPELHSMVDCLVLPQNGPRPHPNEVSGSDLDGDVYFTCWDPNLIP 837
Query: 514 PL--QFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKAR 571
P + PM+Y K+L R I+DV+ +F + ++ND LG I NAHV AD P+ A
Sbjct: 838 PSGESWEPMEYAAHDSKILYRPANIKDVKNFFVNSMMNDKLGFISNAHVARADKSPEGAL 897
Query: 572 SNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAV 631
+ CL LA L++IAVDF KTG AT+P LRV +PDFMEK+ Y+S +VIG+LYR+V
Sbjct: 898 DSDCLRLAHLASIAVDFPKTGKNATMPHDLRVNEWPDFMEKEGAVTYQSNKVIGELYRSV 957
Query: 632 -KDIAPPTATIKSFTKEVAMQS-YDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGI 689
K + + V + S YD D++V G+E Y+ DA+ K YD +L +M ++ +
Sbjct: 958 TKFLKAEVEQHQHADNAVDLDSIYDYDLQVPGYEVYLDDAWTKKISYDRQLRCMMTHFNV 1017
Query: 690 KTEAEILSGCIMEMA---KSFDKKRDLEAIIFAVKSLKKEARAWFN--KKN--------- 735
+ EA +++ + + +S ++ R +A + L +E RA F KK
Sbjct: 1018 QREAALIASWLKRGSPGLRSVNRNRG-DAFAQSYGVLYEEFRAQFEGLKKGLDPDGYSED 1076
Query: 736 --ESDSSH----EDVYAKASAWYHVAYHPSYWGRYKEEGMNRTH-----FLSFPWCIHDK 784
ES SS D AKASAWYHV YHP + + E N LSFPW
Sbjct: 1077 MVESSSSEIKGPTDFAAKASAWYHVTYHPEWKQKALEIFENSGESSPRPLLSFPWITASV 1136
Query: 785 LIEIK 789
L IK
Sbjct: 1137 LSNIK 1141
>gi|242093792|ref|XP_002437386.1| hypothetical protein SORBIDRAFT_10g025950 [Sorghum bicolor]
gi|241915609|gb|EER88753.1| hypothetical protein SORBIDRAFT_10g025950 [Sorghum bicolor]
Length = 1239
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 322/769 (41%), Positives = 451/769 (58%), Gaps = 49/769 (6%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS----PL 108
V ++++TP++ Y P++ SNRV R Y D FLR++FVDE + L + LS PL
Sbjct: 472 VRRLIITPTRTYCMPPQLERSNRVTRHYHQLSDRFLRVAFVDEGMLPLNANALSLQVVPL 531
Query: 109 IS---STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTA 165
+ S+ ++ TT+Y RV + L G + +K+ LAFS SQ+K S W FA T
Sbjct: 532 VKDLMSSPTQQMTTVYRRVQTILTEGFTMCGRKYSFLAFSTSQLKQKSAWFFAEDGTTTV 591
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGI--TYCF 223
A ++E MG F I+N AK+AAR+G F SS + + +++ E +D I Y F
Sbjct: 592 ASMKEWMGQF-PIRNPAKHAARMGLCFTSSYATVTMQPCEVD-----EYLEDVIHNGYNF 645
Query: 224 SDGIGKISAELAEIVAKNCGFT-IYTPSAFQIRYGGYKGVVAVDP--TSSTKLSLRKSML 280
SDGIG I+ +LA VAK T IY PS +QIRY G+KGVVAV ++SLR SM
Sbjct: 646 SDGIGMITQDLALEVAKRLQLTDIYAPSTYQIRYAGFKGVVAVSTGQNDGMRMSLRPSMR 705
Query: 281 KYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLK 340
K++S + L++L+ +K+QP FLNRQ+ITLL++LG+ D VF + Q + L IL+D
Sbjct: 706 KFESAHSVLEVLSWTKFQPSFLNRQIITLLTSLGVPDAVFWQMQEAMLGNLKRILSDNNV 765
Query: 341 AHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGR 400
A+E + S E+ + +L G+ P EP L ML AS + L +TRIF+ GR
Sbjct: 766 AYEVVT-NSCPEHGSTAGLMLSAGFAPATEPHLRAMLLAICASQMQGLLDKTRIFVPKGR 824
Query: 401 AMMGCLDETGTLESGQVFVQ--------CSASRRREFLDNSCNNRSGELGVVEGKVVVAK 452
+MGCLDE G LE GQ F+Q C +R F NN ++ G VV+AK
Sbjct: 825 WLMGCLDELGILEQGQCFIQVSTPSLNNCYVNRGSIFPSEYKNNAE----IIVGTVVMAK 880
Query: 453 NPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI 512
NPCLHPGD+R+L AVDVP LHH+VDC+VFP KG+RPH NE SGSDLDGD+YFV WD L+
Sbjct: 881 NPCLHPGDVRILEAVDVPELHHLVDCLVFPQKGERPHANEASGSDLDGDIYFVTWDENLV 940
Query: 513 PPLQ--FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKA 570
PP + PMDY PA K L R++ D+ +++ + +VND+LG ICNAHVVHAD D A
Sbjct: 941 PPGRQSGTPMDYFPAKTKQLPREVHQSDIIDFYLESMVNDNLGRICNAHVVHADRSDDGA 1000
Query: 571 RSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRA 630
+C++LAKL+ IAVD +KTG +P L + YPDFM K D Y+S++++G+LYR+
Sbjct: 1001 MDPKCIQLAKLAAIAVDSAKTGEIVRMPPSLSPKEYPDFMGKGDAISYKSKKILGRLYRS 1060
Query: 631 V-----KDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMD 685
+ D I + T YD D+EV G ++ DA++ K Y+ +L L+
Sbjct: 1061 ILRENGDDFVSQGTCISNETP------YDIDLEVPGALSFLEDAWQCKCLYEAQLNTLLS 1114
Query: 686 YYGIKTEAEILSGCIMEMAKSFDKKRDL-EAIIFAVKSLKKEARAWFNKKNES--DSSHE 742
YG+++EAE+++G I + + L E I +A L +E R+ F + S D+ +
Sbjct: 1115 QYGLRSEAELVTGEIWPLVGYNKYQYQLKERINYAYSKLHQEFRSIFESIDISYCDNKNL 1174
Query: 743 DVYAKASAWYHVAYHPSYWGRYKEEGMNRTHF-LSFPWCIHDKLIEIKR 790
KASAWY V YHP + R +E +T LSF W D L +IK+
Sbjct: 1175 AYEMKASAWYQVTYHPEFI-RLREPDDEKTPARLSFAWIAVDYLAQIKK 1222
>gi|75330108|sp|Q8LHH9.1|SHL2_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase SHL2; AltName:
Full=Protein SHOOTLESS 2
gi|21328146|dbj|BAC00725.1| putative RNA-dependent RNA polymerase [Oryza sativa Japonica Group]
gi|157279691|dbj|BAF80151.1| SHOOTLESS2 [Oryza sativa Japonica Group]
Length = 1218
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 310/768 (40%), Positives = 465/768 (60%), Gaps = 42/768 (5%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVL----SPL 108
V ++++TP++ Y PE+ SNRV+R Y + D FLR++F+DE + L + VL +P+
Sbjct: 436 VRRLVITPTRAYCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQVLNNNVLNSFTAPI 495
Query: 109 IS---STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTA 165
+ S ++ TT+Y+RV L G + +K+ LAFS++Q++D S W FA + T
Sbjct: 496 VKDLMSNFFQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTV 555
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSD 225
IR+ MG F KNVAK+AAR+GQ F S+ + + +++ D V ++ Y FSD
Sbjct: 556 EAIRKWMGRFTS-KNVAKHAARMGQCFSSTYATVTMRPDEVDESFDDVVHNE---YIFSD 611
Query: 226 GIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAV--DPTSSTKLSLRKSMLKYK 283
GIGKI+ +LA VA+ T PSA+QIR+ G+KGV+AV T+L LR SM K++
Sbjct: 612 GIGKITPDLALEVAERLQLTDNPPSAYQIRFAGFKGVIAVWQGHGDGTRLFLRPSMRKFE 671
Query: 284 SESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHE 343
S L++++ +K+QP FLNRQ+I LLS+L + D +F + Q ++ L+ IL+D A E
Sbjct: 672 SNHLVLEVVSWTKFQPGFLNRQIIILLSSLNVPDSIFWQMQETMLSNLNNILSDRDVAFE 731
Query: 344 ALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMM 403
L S ++ N +L G++P EP L ML R++ L +L + RIF+ GR +M
Sbjct: 732 VLT-TSCADDGNTAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLLEKARIFVPKGRWLM 790
Query: 404 GCLDETGTLESGQVFVQCSASRRREFLDN-----SCNNRSGELGVVEGKVVVAKNPCLHP 458
GCLDE G LE GQ F++ + + S +++ E V+ G VV+AKNPCLHP
Sbjct: 791 GCLDELGVLEQGQCFIRATVPSLNSYFVKHGSRFSSTDKNTE--VILGTVVIAKNPCLHP 848
Query: 459 GDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ-- 516
GD+R+L AVDVP LHH+VDC+VFP KG+RPH NE SGSDLDGD+YFV WD +LIPP +
Sbjct: 849 GDVRILEAVDVPELHHLVDCLVFPQKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKS 908
Query: 517 FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCL 576
+ PMDY+P K L R ++ D+ ++F +++++LG ICNAHVVHADL A +C+
Sbjct: 909 WNPMDYSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAMDEKCI 968
Query: 577 ELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAP 636
LA+L+ AVDF KTG A +P L+ ++YPDFM K+D Y+S++++G+LYR++++
Sbjct: 969 HLAELAATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSIQE--- 1025
Query: 637 PTATIKSFTKEVAMQS---YDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEA 693
+ ++EV + YD D+EV G D++ A++ K YD +L L+ Y ++TEA
Sbjct: 1026 -ASNGDVVSQEVCTPNDLPYDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQYRVRTEA 1084
Query: 694 EILSGCIMEMAKSFDKKR-DL-EAIIFAVKSLKKEARAWF-----NKKNESDSSHEDVY- 745
E+++G I + K+ KK+ D+ + + A +L+KE ++ F ++ D +Y
Sbjct: 1085 ELVTGHITFLVKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIGDDEKNLLYE 1144
Query: 746 AKASAWYHVAYHPSY----WGRYKEEGMNRTHFLSFPWCIHDKLIEIK 789
KASAWY V YHP + G +G LSF W D L IK
Sbjct: 1145 MKASAWYQVTYHPKWVEKSRGILGPDGEEIPASLSFAWIPVDYLARIK 1192
>gi|242093794|ref|XP_002437387.1| hypothetical protein SORBIDRAFT_10g025970 [Sorghum bicolor]
gi|241915610|gb|EER88754.1| hypothetical protein SORBIDRAFT_10g025970 [Sorghum bicolor]
Length = 1251
Score = 533 bits (1374), Expect = e-148, Method: Compositional matrix adjust.
Identities = 318/775 (41%), Positives = 459/775 (59%), Gaps = 47/775 (6%)
Query: 47 DDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS 106
D + V ++++TP++ Y P++ SNRV R Y D FLR++FVDE + L S LS
Sbjct: 485 DYNVFEVRRLIITPTRAYCMPPQVERSNRVTRHYRQVSDRFLRVTFVDEGMLPLNSHALS 544
Query: 107 ----PLIS---STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFAS 159
P + S++ ++ TT+Y RV + L G + +K+ LAFS SQ+K S W FA
Sbjct: 545 LHVVPFVKDSMSSSSQQMTTVYRRVQTILTEGFTMCGRKYSFLAFSTSQLKQKSAWFFAE 604
Query: 160 RPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGI 219
T A ++E MG F I+N AK+AAR+G F SS + + ++ E +D I
Sbjct: 605 DGTTTVASMKEWMGQF-PIRNPAKHAARMGLCFTSSYATVTMQPCEVN-----EYLEDVI 658
Query: 220 --TYCFSDGIGKISAELAEIVAKNCGFT-IYTPSAFQIRYGGYKGVVAVDPTSSTKL--- 273
Y FSDGIG I+ +LA VAK T IY PSA+QIRY G+KGVVAV P + +
Sbjct: 659 HNGYNFSDGIGIITQDLALEVAKRLPLTDIYAPSAYQIRYAGFKGVVAVSPRHNDGMRMM 718
Query: 274 SLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDA 333
SLR SM K++S +++++ +K+QP FLNRQ+ITLL++LG+ D VF + Q + L
Sbjct: 719 SLRPSMRKFESVHPVIEVVSWTKFQPAFLNRQIITLLTSLGVPDDVFWQMQEAMLGNLKR 778
Query: 334 ILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTR 393
IL++ A++ + S E+ + +L G+ P EP L ML AS + L +T
Sbjct: 779 ILSNTDVAYKIVT-SSCPEHGSTAGLMLTAGFAPATEPHLRAMLLAICASQMKGLLDKTW 837
Query: 394 IFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRS--------GELGVVE 445
IF+ GR +MGCLDE G LE GQ F++ S L+N NR ++
Sbjct: 838 IFVPKGRWLMGCLDELGILEQGQCFIRVSTPS----LNNHYMNRGSISPSEYKNNAEIIV 893
Query: 446 GKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFV 505
G VV+AKNPCLHPGD+R+L AVDVP LHH+VDC+VFP KG+RPH+NE SGSDLDGDVYFV
Sbjct: 894 GTVVMAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPKKGERPHSNEASGSDLDGDVYFV 953
Query: 506 CWDHELIPPLQ--FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHA 563
WD L+PP + PMDY+P+ K L R++ +D +++ + +VND+LG ICNAHV HA
Sbjct: 954 TWDENLVPPGRKSCTPMDYSPSKSKQLPREVHQQDTIDFYLESMVNDNLGRICNAHVAHA 1013
Query: 564 DLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRV 623
D D A +C+ELA+L+ IAVD +KTG +P L + YPDFM K+D Y+S+++
Sbjct: 1014 DRSDDGAMDTKCVELAELAAIAVDSAKTGEIVKMPPSLSPKEYPDFMGKEDAISYKSKKI 1073
Query: 624 IGKLYRAV--KDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLG 681
+G+LYR++ ++ + + + E YDTD+EV G ++ DA+K K Y+ +L
Sbjct: 1074 LGRLYRSILMENSGDLLSQVTCISNE---NQYDTDLEVPGALSFLEDAWKCKCLYEAQLN 1130
Query: 682 NLMDYYGIKTEAEILSGCIMEMAKSFDKKRDL---EAIIFAVKSLKKEARAWFNKKNES- 737
L++ +G+ +EAE+++G I + ++KK E + +A L +E R+ F + S
Sbjct: 1131 TLLNQFGVHSEAELVTGEIWSLV-GYNKKYQYQLKERLNYAYSKLHQEFRSIFESIDVSY 1189
Query: 738 -DSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHF-LSFPWCIHDKLIEIKR 790
DS + KASAWY V YHP + R +E +T LSF W D L +IK+
Sbjct: 1190 GDSKNLAYEMKASAWYQVTYHPEFI-RLRELDDEKTPARLSFAWIPVDYLAQIKK 1243
>gi|413954935|gb|AFW87584.1| hypothetical protein ZEAMMB73_985632 [Zea mays]
Length = 1241
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 316/774 (40%), Positives = 450/774 (58%), Gaps = 56/774 (7%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS----PL 108
V +++VTP++ Y P++ SNRV+R Y + D FLR++F DE + L L+ P
Sbjct: 481 VRRLIVTPTREYCIPPQVERSNRVIRHYHELSDRFLRVTFTDEGMLPLNPNALTLRAVPS 540
Query: 109 ISSTNEERH-TTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAAD 167
S+ + R T++Y RV + L G+++ +++ LAFS SQ+K S W FA T A
Sbjct: 541 TSTPSTSRQMTSVYRRVQTALTEGLIMCGRRYSFLAFSASQLKQKSAWFFAEDGATTVAG 600
Query: 168 IRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGIT---YCFS 224
I+E MG F I+N AK+AAR+G F SS + + ++ D ++ED +T Y FS
Sbjct: 601 IKEWMGQF-PIRNPAKHAARMGLCFTSSYATVTMQPGEV----DEDLED--VTRNGYNFS 653
Query: 225 DGIGKISAELAEIVAKNCGFT-IYTPSAFQIRYGGYKGVVAVDPTS-------STKLSLR 276
DGIG I+ +LA VA+ + PSA+QIRY G+KGVVAV P + ++SLR
Sbjct: 654 DGIGVITEDLALEVAEMLPLADRFAPSAYQIRYAGFKGVVAVWPPGPGQEDRGTRRMSLR 713
Query: 277 KSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILT 336
SM K++S T L++++ +K+QP FLNRQ+ITLL+TLG+ D F + Q + +L +L+
Sbjct: 714 PSMRKFESTHTVLEVVSWTKFQPAFLNRQIITLLTTLGVPDDAFWQLQEAMLGKLRRVLS 773
Query: 337 DPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFI 396
D A+E + + S E + +L G+ P EP L ML S + L +T IF+
Sbjct: 774 DSDVAYEVV-INSCPEQGSTAGLMLGAGFAPATEPHLRAMLLAICTSQMQGLLNKTWIFV 832
Query: 397 QNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRS----------GELGVVEG 446
GR +MGCLDE G LE GQ F++ S + + C NRS + V+ G
Sbjct: 833 PKGRWLMGCLDEFGILEQGQCFLRVSTPS----VGSRCVNRSPIFPSEYKGDADAQVITG 888
Query: 447 KVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVC 506
VV+AKNPCLHPGD+R+L AVDVP L+H+VDC VFP KG+RPH +E SGSDLDGDVYFV
Sbjct: 889 TVVMAKNPCLHPGDVRILEAVDVPDLYHLVDCFVFPKKGERPHADEASGSDLDGDVYFVT 948
Query: 507 WDHELIPPLQ--FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHAD 564
WD L+PP + PMDY+PA K L RD+ +D +++ + +V D+LG ICNAH HAD
Sbjct: 949 WDESLVPPGRKSCTPMDYSPAKTKQLPRDVHQQDTIDFYLESMVYDNLGRICNAHAAHAD 1008
Query: 565 LEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVI 624
D A +C+ELA+L++IAVD +KTG +P L + YPDFM K+D Y S++++
Sbjct: 1009 RSDDGAMDPKCIELARLASIAVDSAKTGEIVRMPPALSPKEYPDFMGKEDAISYRSEKIL 1068
Query: 625 GKLYRAV-----KDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNR 679
G+LYR+V D A I + YD D+EV G D++ DA++ + Y+ R
Sbjct: 1069 GRLYRSVLGENDGDFLSRDACISDEIR------YDADLEVLGASDFLQDAWRCRCLYEAR 1122
Query: 680 LGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDL--EAIIFAVKSLKKEARAWFNKKNES 737
L L+D Y + +EAE+++G I +A K E I +A +L +E R+ F + S
Sbjct: 1123 LNALLDQYDVCSEAELVTGEIWSLAGCSKKYHHQLKERINYAYSNLHQEFRSIFESIDAS 1182
Query: 738 DSSHEDVY-AKASAWYHVAYHPSYWGRYKEEG-MNRTHFLSFPWCIHDKLIEIK 789
+ Y KASAWY V YHP R +E G + LSF W D L +IK
Sbjct: 1183 TDNKNLAYEMKASAWYQVTYHPEII-RSREPGDEDAPTRLSFAWIAVDYLAQIK 1235
>gi|413955011|gb|AFW87660.1| hypothetical protein ZEAMMB73_096378 [Zea mays]
Length = 1901
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 314/774 (40%), Positives = 445/774 (57%), Gaps = 56/774 (7%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS----PL 108
V +++VTP++ Y P++ SNRV+R Y + D FLR++F DE + L L+ P
Sbjct: 1141 VRRLIVTPTREYCMPPQVERSNRVIRHYHELSDRFLRVTFTDEGMLPLNPNALTLRAVPS 1200
Query: 109 ISSTNEERH-TTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAAD 167
S+ + R T++Y RV + L G+++ +++ LAFS SQ+K S W FA T A
Sbjct: 1201 TSTPSTSRQMTSVYRRVQTALTEGLIMCGRRYSFLAFSASQLKQKSAWFFAEDGATTVAG 1260
Query: 168 IRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGIT---YCFS 224
I+E MG F I+N AK+AAR+G F SS + + ++ D ++ED +T Y FS
Sbjct: 1261 IKEWMGQF-PIRNPAKHAARMGLCFTSSYATVTMQPGEV----DEDLED--VTRNGYNFS 1313
Query: 225 DGIGKISAELAEIVAKNCGFT-IYTPSAFQIRYGGYKGVVAVDPTS-------STKLSLR 276
DGIG I+ +LA VA+ + PSA+QIRY G+KGVVAV P + ++SLR
Sbjct: 1314 DGIGVITEDLALEVAEMLPLADRFAPSAYQIRYAGFKGVVAVSPPGPGQEDRGTRRMSLR 1373
Query: 277 KSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILT 336
SM K++S L++++ +K+QP FLNRQ+ITLL+TLG+ D F + Q + +L +L+
Sbjct: 1374 PSMRKFESTHNVLEVVSWTKFQPAFLNRQIITLLTTLGVPDDSFWQLQEAMLGKLRRVLS 1433
Query: 337 DPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFI 396
D A+E + S E + +L G+ P EP L ML S + L +T IF+
Sbjct: 1434 DSDVAYEVVT-NSCPEQGSTAGLMLGAGFAPATEPHLRAMLLAICTSQMQGLLNKTWIFV 1492
Query: 397 QNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRS----------GELGVVEG 446
GR +MGCLDE G LE GQ F++ S L + C NRS V+ G
Sbjct: 1493 PKGRWLMGCLDEFGILEQGQCFLRVSTPS----LGSRCVNRSPIFPSEYKGDANAQVITG 1548
Query: 447 KVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVC 506
VV+AKNPCLHPGD+R+L AVDVP L+H+VDC VFP KG+RPH +E SGSDLDGDVYFV
Sbjct: 1549 TVVMAKNPCLHPGDVRILEAVDVPDLYHLVDCFVFPKKGERPHADEASGSDLDGDVYFVT 1608
Query: 507 WDHELIPPLQ--FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHAD 564
WD L+PP + PMDY+PA K L D+ +D +++ + +V D+LG ICNAH HAD
Sbjct: 1609 WDESLVPPGRKSCTPMDYSPAKTKQLPHDVHQQDTIDFYLESMVYDNLGRICNAHAAHAD 1668
Query: 565 LEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVI 624
D A +C+ELA+L++IAVD +KTG +P L + YPDFM K+D Y S++++
Sbjct: 1669 RSDDGAMDPKCIELARLASIAVDSAKTGEIVRMPPALSPKEYPDFMGKEDAISYRSEKIL 1728
Query: 625 GKLYRAV-----KDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNR 679
G+LYR+V D A I + YD D+EV G D++ DA++ + Y+ R
Sbjct: 1729 GRLYRSVLGENDGDFLSRGACISDEIR------YDADLEVPGASDFLQDAWRCRCLYEAR 1782
Query: 680 LGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDL--EAIIFAVKSLKKEARAWFNKKNES 737
L L+D Y +++EAE+++G I +A K + E I +A + +E R F S
Sbjct: 1783 LNALLDQYNVRSEAELVTGEIWSLAGCSKKYQHQLKERINYAYSKVHQEFRIIFESIGAS 1842
Query: 738 DSSHEDVY-AKASAWYHVAYHPSYWGRYKEEG-MNRTHFLSFPWCIHDKLIEIK 789
+ Y KASAWY V YHP R +E G + LSF W D L +IK
Sbjct: 1843 TDNKNLAYEMKASAWYQVTYHPEII-RSREPGDEDAPTRLSFAWIAVDYLAQIK 1895
Score = 113 bits (282), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 110/195 (56%), Gaps = 16/195 (8%)
Query: 70 ISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS----PLISSTNEERH-TTIYERV 124
+ SNRV+R Y + D FLR++F DE + L L+ P S+ + R T++Y RV
Sbjct: 466 VERSNRVIRHYHELSDRFLRVTFTDEGMLPLNPNALTLRAVPSTSTPSTSRQMTSVYRRV 525
Query: 125 LSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKY 184
+ L G+++ +++ LAFS SQ+K S W FA T A I+E MG F I+N AK+
Sbjct: 526 QTALTEGLIMCGRRYSFLAFSASQLKQKSAWFFAEDGATTVAGIKEWMGQF-PIRNPAKH 584
Query: 185 AARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGIT---YCFSDGIGKISAELAEIVAKN 241
AAR+G F SS + + ++ D ++ED +T Y FSDGIG I+ +LA VA+
Sbjct: 585 AARMGLCFTSSYATVTMQPGEV----DEDLED--VTRNGYNFSDGIGVITEDLALEVAEM 638
Query: 242 CGFT-IYTPSAFQIR 255
+ PSA+QIR
Sbjct: 639 LPLADRFAPSAYQIR 653
>gi|260803900|ref|XP_002596827.1| hypothetical protein BRAFLDRAFT_99723 [Branchiostoma floridae]
gi|229282087|gb|EEN52839.1| hypothetical protein BRAFLDRAFT_99723 [Branchiostoma floridae]
Length = 1922
Score = 519 bits (1337), Expect = e-144, Method: Compositional matrix adjust.
Identities = 317/763 (41%), Positives = 432/763 (56%), Gaps = 49/763 (6%)
Query: 46 LDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVL 105
L D +Y KV+VTP+++ F PE + NRVVR Y +DNF+R++F DED +KL
Sbjct: 401 LPDHYVYARKVVVTPTQMLFLKPEPIVENRVVREY--GVDNFIRVAFRDEDFNKL----- 453
Query: 106 SPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTA 165
++ N + RV L+ GI IG + FE L SNSQ++++ WM+A+ E T
Sbjct: 454 ----TAPNPNSIKCVTTRVKDVLQRGIRIGGRHFEYLGSSNSQMREHGCWMYAAEDETTT 509
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSD 225
+DIR MGD + VA Y +RLGQ F SSR+A++V D + +V Y FSD
Sbjct: 510 SDIRAWMGDLSHERCVATYVSRLGQFFSSSRDAVNVSVEDRSVALIDDVTSSQRRYTFSD 569
Query: 226 GIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT--SSTKLSLRKSMLKYK 283
GIGKIS LAE VA G + PSAFQIRYGG KGV+A DP+ + + +R SM K++
Sbjct: 570 GIGKISVPLAEKVAAALGVSP-VPSAFQIRYGGCKGVLAQDPSLGHTDLIHIRGSMKKFE 628
Query: 284 SESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHE 343
SE +L++ + + LNRQ ITLLS LG+ D F K Q + QL +L A +
Sbjct: 629 SEHKTLEVTSVTTPGSLSLNRQAITLLSGLGVPDEEFFKLQERVLNQLAEMLLLDGAAVK 688
Query: 344 ALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQ--NGRA 401
AL G N L + EPF ML + + EL RTRI + GR
Sbjct: 689 ALSGARVGINFQALHNSRIS---LTTEPFFRSMLLAVYRNQMGELLRRTRIQLPAGEGRI 745
Query: 402 MMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDM 461
MMG +DETG L+ GQVF+Q S R E V +G+V V KNPC HPGDM
Sbjct: 746 MMGTMDETGKLQYGQVFLQYSRETDRP---------QAEKIVHQGQVTVTKNPCFHPGDM 796
Query: 462 RVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ-FPPM 520
R AVDVP L HMVDC+VFP++G RPH +E SGSDLDGD+YFV W LI P + P M
Sbjct: 797 RKFTAVDVPELRHMVDCIVFPSRGPRPHPDEMSGSDLDGDMYFVTWREGLILPRENIPAM 856
Query: 521 DYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAK 580
D+T P+KVL R + + D+ E+FA+YI ND LG+I NAH+VHAD E S +C+ELAK
Sbjct: 857 DFTAQPKKVLRRPVQVSDMIEFFAEYIRNDQLGLIANAHLVHADKETKGIFSERCMELAK 916
Query: 581 LSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTAT 640
L + AVDF KTG + LR + YPDFM K DK Y S+++IGKL+R + +
Sbjct: 917 LHSDAVDFPKTGQCPELKGDLRPDKYPDFMMKSDKPQYRSEKIIGKLFRQCQAL----DN 972
Query: 641 IKSFTKEVAMQ--SYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSG 698
+ F+ + ++ D D+ +GFE Y DA Y+ ++ ++M YGI +E E++SG
Sbjct: 973 AQRFSPDPVVEDDGVDQDLIREGFESYTDDAQTQLNIYNTKIRSIMSLYGISSEGEVVSG 1032
Query: 699 CIMEMAKSFDKKRD-----LEAIIFAVKSLKKEARA----WFNKKNES--DSSHEDVYAK 747
CI+++ + ++ E + K+L ++ RA F++K ES D E+ K
Sbjct: 1033 CILKVKQRLGLLKNERFEVTEYVRARFKTLWRKTRAEFFRQFDEKEESSTDRRREEQLKK 1092
Query: 748 ASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIKR 790
ASAWY V Y Y K G + LSFPW ++D L +K+
Sbjct: 1093 ASAWYMVTYSDDY--NNKPHGAS-PKLLSFPWVVYDVLGGLKK 1132
>gi|297737620|emb|CBI26821.3| unnamed protein product [Vitis vinifera]
Length = 943
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 255/410 (62%), Positives = 299/410 (72%), Gaps = 37/410 (9%)
Query: 384 NLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGV 443
+LLELRT+TRIF+ NG S S F +
Sbjct: 558 DLLELRTKTRIFVPNG----------------------SGSHHDNF-------------I 582
Query: 444 VEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVY 503
+EGKVVVAKNPCLHPGD+R+L AVDVP+LHHMVDCVVFP KG RPH +ECSGSDLDGD+Y
Sbjct: 583 LEGKVVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIY 642
Query: 504 FVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHA 563
FVCWDH+LIPP Q PMDYTPAP KVL D+ IE+VEEYF +YI ND LG+I NAH V A
Sbjct: 643 FVCWDHDLIPPRQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFA 702
Query: 564 DLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRV 623
D E DKA C ELAKL +IA++F KTGV A IP L V+ YPDFMEK +K YESQ V
Sbjct: 703 DKEYDKALCPPCKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSV 762
Query: 624 IGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNL 683
IGKL+R VKD+AP ++SFT++VAMQSYD DMEVDGFEDY+ DAF YK++YD +LG+L
Sbjct: 763 IGKLFREVKDVAPHNYDVRSFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSL 822
Query: 684 MDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESD-SSHE 742
MD GI+TE+EILSG IM+M+KSFDK++D EAI AV+SL+KEAR WFNK + +
Sbjct: 823 MDCCGIRTESEILSGSIMKMSKSFDKRKDAEAIALAVRSLRKEARTWFNKMGSGTYAGAD 882
Query: 743 DVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIKRGK 792
DVYA ASAWYHV YHP YWG Y EGM HFLSFPWC++DKLI+IKR K
Sbjct: 883 DVYAIASAWYHVTYHPYYWGCYN-EGMYHDHFLSFPWCVYDKLIQIKRDK 931
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/292 (67%), Positives = 240/292 (82%), Gaps = 3/292 (1%)
Query: 1 MEYIEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTP 60
+ +IEHALE L++L ECCYEPVRWL EQYR Y+ S++ SPA++LD GL+YV +V +TP
Sbjct: 272 ISFIEHALEKLYYLEECCYEPVRWLHEQYRTYI-SKQVAGSPAISLDTGLVYVRRVQITP 330
Query: 61 SKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTI 120
KVYF GPE+++SNRV+R+YP++IDNFLR+SF+DE+ +K++STV+SP +S NE R T +
Sbjct: 331 CKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHSTVISPRMS--NEGRRTGV 388
Query: 121 YERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKN 180
Y R+LS L+NGIVIGDKKF+ LA S+SQ++DNS WMFASRP LTAADIR MGDF I+N
Sbjct: 389 YRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGLTAADIRSRMGDFSQIRN 448
Query: 181 VAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAK 240
VAKYAARLGQSF SS+E L V +IEIIPD+E DG TY FSDGIGKISAELA VA
Sbjct: 449 VAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDGTTYVFSDGIGKISAELAHRVAI 508
Query: 241 NCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDIL 292
CG TPSAFQIRYGGYKGVVAVDPTSS KLSLRKSM KY+SE+T+LD+L
Sbjct: 509 KCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESENTNLDLL 560
>gi|260789117|ref|XP_002589594.1| hypothetical protein BRAFLDRAFT_81564 [Branchiostoma floridae]
gi|229274774|gb|EEN45605.1| hypothetical protein BRAFLDRAFT_81564 [Branchiostoma floridae]
Length = 1867
Score = 503 bits (1296), Expect = e-139, Method: Compositional matrix adjust.
Identities = 310/766 (40%), Positives = 437/766 (57%), Gaps = 52/766 (6%)
Query: 46 LDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVL 105
L D +Y KV+VTP+++ F PE + NRVVR Y +DNF+R++F DED KL
Sbjct: 379 LPDHYVYARKVVVTPTQMLFLKPEPIVENRVVREY--GVDNFIRVAFRDEDFSKL----- 431
Query: 106 SPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTA 165
+ TN + RV L GI IG++ F+ L SNSQ++++ WM+A+ + T
Sbjct: 432 ----AVTNPNSIRCVTSRVKDVLEKGIRIGERNFKYLGSSNSQMREHGCWMYAAADKTTT 487
Query: 166 A--DIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSD--IEIIPDVEVEDDGITY 221
+ DIR MGD + VA Y +RLGQ F SS A+ V D +E+I DVE T+
Sbjct: 488 STSDIRGWMGDLSHERCVATYVSRLGQFFSSSWNAVSVSVEDRSVELIADVETSSG--TH 545
Query: 222 CFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT--SSTKLSLRKSM 279
FSDGIGKIS LA+ VA G + PSAFQIRY G KGV+A DPT ++ ++ +R SM
Sbjct: 546 TFSDGIGKISVPLAKKVAAALGVSP-VPSAFQIRYAGCKGVLAQDPTLGNTDRIQIRGSM 604
Query: 280 LKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPL 339
K++SE +L++ + + LNRQ ITLLS L + D F K Q + QL +L
Sbjct: 605 KKFESEHKTLEVTSVTTPGVLSLNRQAITLLSGLNVPDMEFLKLQERVLNQLAEMLILDE 664
Query: 340 KAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQ-- 397
A +AL G + L + G EPF ML + + EL RTRI I
Sbjct: 665 AAVKALSGARVGMDIRALHD---SGISLTTEPFFRSMLLAVYRNRMGELLRRTRIEIPAG 721
Query: 398 NGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLH 457
GR MMG +DETG L+ GQVF+Q S RE + + V +G+V V KNPC H
Sbjct: 722 EGRIMMGTMDETGKLQYGQVFIQYS----RE-----VDKPQADKVVHQGQVTVTKNPCFH 772
Query: 458 PGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ- 516
PGDMR AVDVP L HMVDC+VFP++G RPH +E SGSDLDGD+YFV W LI P +
Sbjct: 773 PGDMRKFTAVDVPELRHMVDCIVFPSRGPRPHPDEMSGSDLDGDMYFVTWREGLILPREN 832
Query: 517 FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCL 576
P MD+T P++VL R + D+ E+FA+YI ++ LG+I NAH+VHAD E S +C+
Sbjct: 833 RPAMDFTAQPKRVLHRPVQESDMIEFFAEYIGSNQLGLIANAHLVHADKEDQGIFSQKCI 892
Query: 577 ELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAP 636
+LA+L + AVD KTG + LR E+YPDFM K DK Y S+R+IG+L+R +++
Sbjct: 893 DLAQLHSDAVDAPKTGQCPELKGDLRPEVYPDFMMKSDKPQYRSERIIGRLFRKCQELD- 951
Query: 637 PTATIKSFTKEVAMQS--YDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAE 694
+A +S T ++ + D D+ +GF+ YI DA Y+N + ++M YGI +E E
Sbjct: 952 -SANQRSGTDDIVYHTSGIDHDLVREGFDSYIEDAQTQLNIYNNMMMSIMSLYGITSEGE 1010
Query: 695 ILSGCIMEMAKSFDKKRD-----LEAIIFAVKSLKKEARAWFNKKNE-----SDSSHEDV 744
++SGCI+++ + ++ E + K+L ++ RA F K+ + + E+
Sbjct: 1011 VVSGCILKVKQRLGLLKNERFEVTEYVRARFKTLWRKTRAEFFKQFDVEELSEERRKEEQ 1070
Query: 745 YAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIKR 790
+ASAWY V Y +Y + + LSFPW ++D L +K+
Sbjct: 1071 LKRASAWYMVTYSDAYDEKPHDPS---PKLLSFPWVVYDVLASLKK 1113
>gi|449467491|ref|XP_004151456.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
Length = 401
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 249/394 (63%), Positives = 295/394 (74%), Gaps = 15/394 (3%)
Query: 402 MMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDM 461
MMGCLDET TLE GQVFV CS R + G VV+GK+VVAKNPCLHPGD+
Sbjct: 1 MMGCLDETQTLEYGQVFVHCSIPGR---------SSEGNF-VVKGKIVVAKNPCLHPGDV 50
Query: 462 RVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMD 521
RVL AVDV +LHHMVDCVVFP KGKRPH NECSGSDLDGD+YFVCWD EL Q PM
Sbjct: 51 RVLDAVDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDTELTCIKQVKPMS 110
Query: 522 YTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKL 581
Y PAP L D+TIE+V+EYFA+Y+VND LG I NAH V AD KA S +C++LAKL
Sbjct: 111 YKPAPTIQLDHDVTIEEVQEYFANYMVNDGLGAIANAHTVFADKNSKKAMSVECIKLAKL 170
Query: 582 STIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATI 641
+IAVDF KTGV A +P LRV YPDFM+K +K Y S V+GKL+R VKD++ +
Sbjct: 171 FSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVSAF 230
Query: 642 KSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIM 701
+ FT+EVA + YD DMEVDGFE Y+ +AF YKT+YD +LGNLMDYYGIKTE E++SG I+
Sbjct: 231 EIFTREVATKCYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNIL 290
Query: 702 EMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESDSSHEDV---YAKASAWYHVAYHP 758
+MAKSFDK++DLE I FA+KSL+KE R WFN +NES S+++D+ YA+ASAWY V YHP
Sbjct: 291 KMAKSFDKRKDLEQIAFAMKSLRKEVRFWFN-ENESKSTYDDIQDEYARASAWYCVTYHP 349
Query: 759 SYWGRYKEEGMNRTHFLSFPWCIHDKLIEIKRGK 792
YWG Y EG R HFLSFPWC+ DKLI+IKR K
Sbjct: 350 DYWGCY-NEGTKRDHFLSFPWCVADKLIQIKREK 382
>gi|316989903|gb|ADU77017.1| RNA-dependent RNA polymerase 1c [Cucumis sativus]
Length = 400
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 245/393 (62%), Positives = 291/393 (74%), Gaps = 15/393 (3%)
Query: 403 MGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMR 462
MGCLDET TLE GQVFV CS R + G V KVVVAKNPCLHPGD+R
Sbjct: 1 MGCLDETQTLEYGQVFVHCSIPGR---------SSEGNFVVKG-KVVVAKNPCLHPGDVR 50
Query: 463 VLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDY 522
+L A+DV +LHHMVDCVVFP KGKRPH NECSGSDLDGD+YFVCWD EL Q PM Y
Sbjct: 51 LLDAIDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDTELTCIKQVKPMSY 110
Query: 523 TPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLS 582
PAP L D+TIE+V+EYFA+Y+VND LG I NAH V AD KA S +C++LAKL
Sbjct: 111 KPAPTIQLDHDVTIEEVQEYFANYMVNDGLGAIANAHTVFADKNSKKAMSAECIKLAKLF 170
Query: 583 TIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIK 642
+IAVDF KTGV A +P LRV YPDFM+K +K Y S V+GKL+R VKD++ + +
Sbjct: 171 SIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKATYVSNGVLGKLFRGVKDVSSDVSAFE 230
Query: 643 SFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIME 702
FT+EVA + YD DMEVDGFE Y+ +AF YKT+YD +LGNLMDYYGIKTE E++SG I++
Sbjct: 231 IFTREVATKCYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNILK 290
Query: 703 MAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESDSSHEDV---YAKASAWYHVAYHPS 759
MAKSFDK++DLE I FA+KSL+KE R WFN +NES S+++D+ YA+ASAWY V YHP
Sbjct: 291 MAKSFDKRKDLEQIAFAMKSLRKEVRFWFN-ENESKSTYDDIQDEYARASAWYCVTYHPD 349
Query: 760 YWGRYKEEGMNRTHFLSFPWCIHDKLIEIKRGK 792
YWG Y EG R HFLSFPWC+ DKLI+IKR K
Sbjct: 350 YWGCY-NEGTKRDHFLSFPWCVADKLIQIKREK 381
>gi|260801473|ref|XP_002595620.1| hypothetical protein BRAFLDRAFT_64730 [Branchiostoma floridae]
gi|229280867|gb|EEN51632.1| hypothetical protein BRAFLDRAFT_64730 [Branchiostoma floridae]
Length = 1282
Score = 480 bits (1235), Expect = e-132, Method: Compositional matrix adjust.
Identities = 310/769 (40%), Positives = 426/769 (55%), Gaps = 67/769 (8%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
V +V VTP+++ F PEI NR++R Y + DNF+R+S DED KL S+
Sbjct: 257 VRRVFVTPTRLMFMHPEIVRDNRILRKYGE--DNFMRVSIRDEDFCKL---------SAV 305
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESM 172
E TT + RV L++G+++GD+K+ LA SNSQ++++++W FAS + TA IR+ M
Sbjct: 306 GGEEETT-FTRVKKFLQDGLLVGDRKYVFLAASNSQLREHNVWFFASDGKNTAESIRKDM 364
Query: 173 GDFRDIKNVAKYAARLGQSFGSSREALH--VDSSDIEIIPDVEVEDDGITYCFSDGIGKI 230
GDF DIK A AR+GQ F ++ ++ + + ++ IP+V+ + YCFSDGIGKI
Sbjct: 365 GDFSDIKCPATVLARMGQCFSNTEPSVTALISAGEVVRIPEVKGGYPNV-YCFSDGIGKI 423
Query: 231 SAELAEIVAKNCGF---TIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYKSES 286
S LA+ V + PSA+QIRYGG KGVVAVDP+ S + +R SM+K+ S
Sbjct: 424 SQSLAQKVNERRAIGRGETEVPSAYQIRYGGVKGVVAVDPSLDSDVMEVRPSMMKFLSFD 483
Query: 287 TSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALE 346
++I S +LNRQ+IT+LS LG+ D F++ Q + L +L A E+++
Sbjct: 484 QQIEICMTSHPGRLYLNRQVITILSALGVPDQTFQQLQEAMLQNLSDMLVREDVAFESMK 543
Query: 347 LMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFI--QNGRAMMG 404
+ L L CG EPF MLQ L ELR R RI I + GR M+G
Sbjct: 544 RRAQPLGLP-LGRLSRCGLHVTTEPFFRAMLQKMFTCFLGELRRRARIEIPPEYGRNMLG 602
Query: 405 CLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVL 464
LDETGTLE GQVFVQ + ++ G+ V G VVV +NPC HPGD+R L
Sbjct: 603 VLDETGTLEYGQVFVQYT---------EDITDKGGQTKVT-GDVVVTRNPCFHPGDLRKL 652
Query: 465 RAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFP-----P 519
RAVD+PSLHHMVD +VFP+KG RPH NE SG DLDGD +FV W P L FP P
Sbjct: 653 RAVDIPSLHHMVDVIVFPSKGPRPHPNEMSGGDLDGDQFFVTW----YPGLIFPKPNQGP 708
Query: 520 MDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELA 579
MD+T P+K L + D+ ++ +YI ND LG I NAH+ A E + S++CL LA
Sbjct: 709 MDFTAQPKKELP-SVETHDIIDFIVEYIANDRLGQIANAHLAFAHTEKEGIFSSKCLGLA 767
Query: 580 KLSTIAVDFSKTGVAATIPSGLRVEIYPDFM-EKQDKTCYESQRVIGKLYRAVKDIAPPT 638
K + AVDF KTGV T+ R YPDFM +K+ KT S+ V GK+YR I
Sbjct: 768 KKHSDAVDFPKTGVCPTLKMEERPLEYPDFMGKKKGKTSRRSEAVQGKMYRECLRIERVC 827
Query: 639 ATIKSFTKEVAMQS--YDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEIL 696
+ + K+ ++ D D + Y + + K ++ ++L +LM YGI TEAE +
Sbjct: 828 SHLHK-DKDTGGKNIEIDPDFTHKDRKRYAVSSRQAKDDFYDKLQDLMSQYGIDTEAEAV 886
Query: 697 SGCIMEMAKSF-DKKRDLEAIIFA---VKSLKKEAR----AWFNKKNESDSSH--EDVYA 746
SGC + M D+ EA A + L+K+ R A F ++ D H E+V A
Sbjct: 887 SGCFVRMHHHMEDRYERFEAERIAKDRIAHLRKQTRQEFFAEFGGEDSIDLDHCPENVMA 946
Query: 747 KASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIKRGKQRS 795
KASAWYH +Y + LSFPW + D L E+K+ RS
Sbjct: 947 KASAWYHASY-----------STGNPNLLSFPWVVADVLAELKKRATRS 984
>gi|384245028|gb|EIE18524.1| RdRP-domain-containing protein, partial [Coccomyxa subellipsoidea
C-169]
Length = 723
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 288/755 (38%), Positives = 432/755 (57%), Gaps = 68/755 (9%)
Query: 69 EISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVLSTL 128
++ LSNRV+R + D FLR++F +E+ +L + + R +R+ L
Sbjct: 1 QVELSNRVIRHHRQYSDRFLRVTFCEENGGRL--------CFANDIPRLEDYMDRMEGIL 52
Query: 129 RNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPE--LTAADIRESMGDFRDIKNVAKYAA 186
++G+ + D+ F+ LAFS+ QV++ S W +A+ P+ TAADIR MGDF I+ VAK+ A
Sbjct: 53 KDGLELADRHFDLLAFSSGQVREQSAWFWAA-PDSGPTAADIRAWMGDFDAIRCVAKFTA 111
Query: 187 RLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVA------K 240
R+GQ F S+ + L + + ++ +PDVE YCFSDG+G+IS EL+ VA
Sbjct: 112 RMGQCFSSTVDTLKLQAYTVQTVPDVERNG----YCFSDGVGRISVELSRAVADRLEQLG 167
Query: 241 NCGFTIYTPSAFQIRYGGYKGVVAVD-PTSSTKLSLRKSMLKYKSESTSLDILANSKYQP 299
C + P A+QIRY G KG+V++ + +R SM K+++ + L+I ++Y P
Sbjct: 168 RCP-AGWLPRAYQIRYAGCKGMVSLHMGLRGKRFEVRPSMNKFEASAQMLEICDYARYVP 226
Query: 300 CFLNRQLITLL--STLGIRDHVFEKKQ-REGVAQLDAILTDPLKAHEALELMSSGENTNV 356
+LNRQ++TLL LG+ + VF++ Q R + L+ + L+ L L+ G+ +
Sbjct: 227 GYLNRQIVTLLMQKCLGVPNSVFQRLQARTALFNLNK--SGQLRCF-CLNLIKWGDAAIM 283
Query: 357 LK--ELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLES 414
L+ ++ G+ EP+L +L RA L +L+ +TR+ + +MG +DE G LE
Sbjct: 284 LEAAHIIRAGFDVGTEPYLKSILLCLRAHLLQDLKAKTRVRVPKAALLMGVMDEEGVLEP 343
Query: 415 GQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDV---PS 471
GQVF+ NS + +V G VVVAKNPC HPGD+R +A + P
Sbjct: 344 GQVFLSV----------NSLPTMALP-AIVTGTVVVAKNPCFHPGDVRKFQARPLFRSPE 392
Query: 472 LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI------PPLQFPPMDYTPA 525
LHH+V+C+VFP KG+RPH +ECSGSDLDGD YFV W+ L+ P+ F D
Sbjct: 393 LHHLVNCLVFPQKGQRPHPDECSGSDLDGDQYFVSWEPGLLFPGPNREPMSFHSQDPVLI 452
Query: 526 PEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIA 585
PE + + DV ++F DYI ND LG+I NAH+ AD++PD A+ +QCL+LA+L + A
Sbjct: 453 PE---GQASLVGDVAQFFMDYIFNDLLGIIANAHLATADIKPDGAQCSQCLQLARLHSNA 509
Query: 586 VDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTAT-IKSF 644
VDF+K+G A LR YPDFM K++K +ES +IG+L+RA+ PP + I S
Sbjct: 510 VDFTKSGRPAEFSRDLRPLSYPDFMMKKNKETHESSTIIGQLFRAITVPTPPLLSDIASE 569
Query: 645 TKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMA 704
T+ D D+ V+GF+ +I A + +T Y++ L +M+ YG+ EAEI+SGCI + A
Sbjct: 570 TQP------DPDIMVEGFQQFIPAAQEARTRYEHALVQIMNQYGVHNEAEIVSGCISKFA 623
Query: 705 KSFDKKRDLEAIIF-AVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGR 763
K KK D++ +I AV++L+K+ RA F + S KA AWYHV Y P+Y G
Sbjct: 624 KHRRKKGDVKTMIIDAVRALRKKNRAEFPGPLAARSRR--ALQKACAWYHVTYSPAYSGY 681
Query: 764 YKEEGMNR----THFLSFPWCIHDKLIEIKRGKQR 794
++ +SFPW + D L IK G +R
Sbjct: 682 GPAAALSTRELDARLISFPWILTDHLAVIKTGPRR 716
>gi|291228412|ref|XP_002734181.1| PREDICTED: RNA-dependent RNA polymerase Family family member
(rrf-3)-like [Saccoglossus kowalevskii]
Length = 1491
Score = 473 bits (1218), Expect = e-130, Method: Compositional matrix adjust.
Identities = 299/782 (38%), Positives = 442/782 (56%), Gaps = 84/782 (10%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISS 111
Y+ +V+VTPS++ F PE+ NRV+R Y +E RL F DE+ +L + V ISS
Sbjct: 383 YLRRVMVTPSRLIFLQPELMFENRVLRRYSEEY--CARLVFKDENYQRLSNPVS---ISS 437
Query: 112 TNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPE-LTAADIRE 170
+ +++STL+NG + D+ +E LA SNSQ++++ W +A TAA+IRE
Sbjct: 438 D-------VANKIISTLQNGFQVADRNYEFLACSNSQLREHGCWFYAKDNHGNTAANIRE 490
Query: 171 SMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI--IPDVE--VEDDGITYCFSDG 226
MGDF I+ VA Y +R+GQ F +S E ++V D+ + I D+ ++ + YCFSDG
Sbjct: 491 WMGDFSKIRCVATYMSRMGQCFSTSEETVNVTVEDVTVSNIEDITGGMDINQKPYCFSDG 550
Query: 227 IGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYKSE 285
IGKIS +L E + + + SA+QIRY G KG+VA+DP+ + ++ +RKSMLK+ SE
Sbjct: 551 IGKISKQLIEKICEKTEKHV-VASAYQIRYAGSKGMVALDPSLTGEQIMIRKSMLKFPSE 609
Query: 286 STSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL 345
+++I+ +K LNRQ+IT+LS LGI D VF K Q + L + LK A
Sbjct: 610 HDNIEIMNLTKPARLHLNRQVITILSGLGIEDKVFLKLQHRMLNNLANMF---LKEDVAA 666
Query: 346 ELMSSGENTNV-LKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFI--QNGRAM 402
+S + K ++ CG EPF +LQ S L ELR R RI + Q R M
Sbjct: 667 AWLSRRSQIGINFKHMMTCGISLTTEPFFKSLLQAVYKSLLGELRRRARIILPPQFARNM 726
Query: 403 MGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMR 462
MG +DETG L+ GQVF+Q S LD E V G VVV K PC HPGD+R
Sbjct: 727 MGVIDETGALQYGQVFIQYSKK-----LDKP----QKEKIVHSGPVVVTKFPCYHPGDVR 777
Query: 463 VLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQF----- 517
+AVD+P+L+H++DC+VFP +G RPH NE +GSDLDGD YFV W +P L F
Sbjct: 778 KFQAVDIPALYHLIDCIVFPRQGPRPHPNEMAGSDLDGDEYFVTW----LPELLFDRENH 833
Query: 518 PPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLE 577
M + A +K L + + D+ ++ +YI ND LG++ NAH+ AD + D S+ CL
Sbjct: 834 EAMPFPAAVKKELTNPVEVADMIKFVTEYIQNDCLGLMANAHLAMADQQSDGIFSDMCLN 893
Query: 578 LAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYR---AVKDI 634
+ KL + AVDF+KTG T+ + YPDFM KQDKT Y+S+ ++GKLYR +++
Sbjct: 894 ICKLLSEAVDFAKTGNCPTLDKNQQPNTYPDFMGKQDKTNYKSKHILGKLYRHCWSLESA 953
Query: 635 APPTATIKSFTKEVAMQSYDT-DMEVD------GFEDYITDAFKYKTEYDNRLGNLMDYY 687
P S+ K+ YD ++EVD G+E++++ A K +Y+N+L LM Y
Sbjct: 954 TIPKLRAHSYHKD---SDYDVRNVEVDQSLLYPGYEEHLSFANKSLKKYNNQLRLLMSQY 1010
Query: 688 GIKTEAEILSGCIMEMAK-------SFDKKRDLEAIIFAVKSLKK---------EARAWF 731
GI++EAE +SGCI ++ K FD ++ + A + ++S+ + EA
Sbjct: 1011 GIESEAEAISGCITKLNKRITGKGERFDAEKVIRAKLAHLRSVTRREFDSSFGDEANGGS 1070
Query: 732 NKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIK-R 790
+ +E + ++ + AKASA+Y+V Y T +SFPW + D L +++ R
Sbjct: 1071 DNDDEDEERNDKILAKASAFYYVTY-----------SQRDTQLISFPWVVADLLRKVRLR 1119
Query: 791 GK 792
G+
Sbjct: 1120 GQ 1121
>gi|222618586|gb|EEE54718.1| hypothetical protein OsJ_02054 [Oryza sativa Japonica Group]
Length = 1571
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 280/763 (36%), Positives = 429/763 (56%), Gaps = 67/763 (8%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVL----SPL 108
V ++++TP++ Y PE+ SNRV+R Y + D FLR++F+DE + L + VL +P+
Sbjct: 824 VRRLVITPTRAYCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQVLNNNVLNSFTAPI 883
Query: 109 IS---STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTA 165
+ S ++ TT+Y+RV L G + +K+ LAFS++Q++D S W FA + T
Sbjct: 884 VKDLMSNFFQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTV 943
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSD 225
IR+ MG F KNVAK+AAR+GQ F S+ + + +++ D V ++ Y FSD
Sbjct: 944 EAIRKWMGRFTS-KNVAKHAARMGQCFSSTYATVTMRPDEVDESFDDVVHNE---YIFSD 999
Query: 226 GIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAV--DPTSSTKLSLRKSMLKYK 283
GIGKI+ +LA VA+ T PSA+QIR+ G+KGV+AV T+L LR SM K++
Sbjct: 1000 GIGKITPDLALEVAERLQLTDNPPSAYQIRFAGFKGVIAVWQGHGDGTRLFLRPSMRKFE 1059
Query: 284 SESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHE 343
S L++++ +K+QP FLNRQ+I LLS+L + D +F + Q ++ L+ IL+D A E
Sbjct: 1060 SNHLVLEVVSWTKFQPGFLNRQIIILLSSLNVPDSIFWQMQETMLSNLNNILSDRDVAFE 1119
Query: 344 ALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMM 403
L S ++ N +L G++P EP L ML R++ L +L + RIF+ GR +M
Sbjct: 1120 VLT-TSCADDGNTAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLLEKARIFVPKGRWLM 1178
Query: 404 GCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRV 463
GCLDE G LE GQ F++ + + V
Sbjct: 1179 GCLDELGVLEQGQCFIRATVPSLNSYF--------------------------------V 1206
Query: 464 LRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ--FPPMD 521
S + ++ KG+RPH NE SGSDLDGD+YFV WD +LIPP + + PMD
Sbjct: 1207 KHGSRFSSTDKNTEVILGTVKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMD 1266
Query: 522 YTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKL 581
Y+P K L R ++ D+ ++F +++++LG ICNAHVVHADL A +C+ LA+L
Sbjct: 1267 YSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAMDEKCIHLAEL 1326
Query: 582 STIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATI 641
+ AVDF KTG A +P L+ ++YPDFM K+D Y+S++++G+LYR++++ +
Sbjct: 1327 AATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSIQE----ASNG 1382
Query: 642 KSFTKEVAMQS---YDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSG 698
++EV + YD D+EV G D++ A++ K YD +L L+ Y ++TEAE+++G
Sbjct: 1383 DVVSQEVCTPNDLPYDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTG 1442
Query: 699 CIMEMAKSFDKKR-DL-EAIIFAVKSLKKEARAWF-----NKKNESDSSHEDVY-AKASA 750
I + K+ KK+ D+ + + A +L+KE ++ F ++ D +Y KASA
Sbjct: 1443 HITFLVKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIGDDEKNLLYEMKASA 1502
Query: 751 WYHVAYHPSY----WGRYKEEGMNRTHFLSFPWCIHDKLIEIK 789
WY V YHP + G +G LSF W D L IK
Sbjct: 1503 WYQVTYHPKWVEKSRGILGPDGEEIPASLSFAWIPVDYLARIK 1545
Score = 82.4 bits (202), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 73/120 (60%), Gaps = 7/120 (5%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVL----SPL 108
V ++++TP++ Y PE+ SNRV+R Y + D FLR++F+DE + L + VL +P+
Sbjct: 391 VRRLVITPTRAYCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQVLNNNVLNSFTAPI 450
Query: 109 IS---STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTA 165
+ S ++ TT+Y+RV L G + +K+ LAFS++Q++D S W FA + TA
Sbjct: 451 VKDLMSNFFQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTA 510
>gi|312283345|dbj|BAJ34538.1| unnamed protein product [Thellungiella halophila]
Length = 998
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 259/596 (43%), Positives = 374/596 (62%), Gaps = 32/596 (5%)
Query: 48 DGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS- 106
D + + ++++TP++ Y PE+ LSNRV+R Y + FLR++F+DE + + S VLS
Sbjct: 406 DDISEIRRLVITPTRAYCLPPEVELSNRVLRKYKAVSERFLRVTFMDESMQTMNSNVLSY 465
Query: 107 ---PLI---SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASR 160
P++ +S++ + T +++RV + L +G + +K+ LAFS++Q++D S W F+
Sbjct: 466 FVAPIVKDLTSSSFSQKTHVFKRVKTLLTDGFKLCGRKYSFLAFSSNQLRDRSAWFFSED 525
Query: 161 PELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI-IPDVEVEDDGI 219
+DI+ MG F+D KNVAK AAR+G F S+ + V +++ +P E+E +G
Sbjct: 526 GNTRVSDIKIWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTELP--EIERNG- 581
Query: 220 TYCFSDGIGKISAELAEIVAKNCGFTI-YTPSAFQIRYGGYKGVVAVDPTSS--TKLSLR 276
Y FSDGIG IS +LA+ V + + YTP A+QIRY G+KGVVA P+ +L+LR
Sbjct: 582 -YTFSDGIGTISPDLADEVMEKLKLDVHYTPCAYQIRYAGFKGVVARWPSKGDGIRLALR 640
Query: 277 KSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILT 336
SM K+ S+ T L+I + +++QP FLNRQ+I+LLS LG+ D +F Q + +L+ IL
Sbjct: 641 HSMNKFHSKHTILEICSWTRFQPGFLNRQIISLLSVLGVPDEIFWDMQESMLCKLNRILD 700
Query: 337 DPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFI 396
D A E L S E N +L G+KP +EP L ML + R + L LR ++RIF+
Sbjct: 701 DIDVAFEVLT-TSCAEQGNTAAIMLSAGFKPKIEPHLRGMLSSVRTAQLWGLREKSRIFV 759
Query: 397 QNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSG--------ELGVVEGKV 448
+GR +MGCLDE G LE GQ F+Q S + ++N C +R G ++ VV+G V
Sbjct: 760 SSGRWLMGCLDEAGILEQGQCFIQVS----KPSIEN-CFSRHGSRFKESKADMQVVKGYV 814
Query: 449 VVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWD 508
+AKNPCLHPGD+R+L AVDVP LH M DC++FP G RPHTNE SGSDLDGD+YFV WD
Sbjct: 815 AIAKNPCLHPGDVRILEAVDVPQLHDMYDCLIFPQNGDRPHTNEASGSDLDGDLYFVAWD 874
Query: 509 HELIPPLQ--FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLE 566
+LIPP + + M Y A EK L R + +D+ ++F + N+ LG ICNAHVVHAD
Sbjct: 875 QKLIPPSRESWHAMQYDAAKEKTLGRPVNHQDIIDFFVKNMANEHLGTICNAHVVHADRS 934
Query: 567 PDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQR 622
A +CL LA+L+ AVDF KTG ++P L+ ++YPDFM K+D Y S++
Sbjct: 935 EYGAMDEECLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYLSKK 990
>gi|402075074|gb|EJT70545.1| RNA-dependent RNA polymerase 1 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1551
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 251/670 (37%), Positives = 374/670 (55%), Gaps = 38/670 (5%)
Query: 51 IYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLIS 110
I + K +VTPS VY + P + +NRV+R Y D D F+R+ F DE + I+
Sbjct: 426 ILMRKAIVTPSTVYLNSPTVETTNRVLRHYYDFRDRFMRIQFTDE--------LHRGRIN 477
Query: 111 STNEER-HTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIR 169
+T ++R + +Y RV LRNGI IGD+ ++ LAF NSQ++++S + FA+ ++T IR
Sbjct: 478 ATQDQRVNDELYTRVYRVLRNGIFIGDRHYQFLAFGNSQMRESSAYFFAAVGDVTCDSIR 537
Query: 170 ESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDV-EVEDDGITYCFSDGIG 228
MGDFR I+NV KYAARLGQ F ++R ++DS+ ++ I + ++E++G YCFSDG+G
Sbjct: 538 AWMGDFRHIRNVGKYAARLGQCFSTTR---NIDSTSVQWIKSIPDIEENG--YCFSDGVG 592
Query: 229 KISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP-TSSTKLSLRKSMLKYKSEST 287
KIS + +++ Y PSAFQ R GG KG++ V P + +R S K+++E +
Sbjct: 593 KISQFWSTRISQRLSLNTY-PSAFQFRMGGRKGILTVWPDVKGMDIHVRPSQEKFQTEHS 651
Query: 288 SLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALEL 347
L+++ S+Y LNRQ I +LS LGI DHVFE + +A D + DP+ A L L
Sbjct: 652 RLEVIRCSQYAVATLNRQTIPILSALGIEDHVFEDMLADQLASYDKAMEDPVAAMSLLNL 711
Query: 348 -MSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCL 406
+ + T L +L+M G EPF+ ML+ +R ++ L+ + RI ++ G ++GC+
Sbjct: 712 YVDENQMTKALSQLIMAGLMKSQEPFVWTMLRLWRTWSIKSLKEKARIVVEKGAFVLGCV 771
Query: 407 DETGTLESGQVFVQCSASRRREFLDNSC--------NNRSGELGVVEGKVVVAKNPCLHP 458
DETG L V+ +R + + +G VV G VV +NP LHP
Sbjct: 772 DETGKLRGHYARVKTHPDQRPRLNHSELPQIFLQVPDGPNGLYKVVTGTCVVGRNPSLHP 831
Query: 459 GDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ-- 516
GD+R++ AVDVP L H+ D VVFP G R + CSG DLDGD YF+ WD L+PP +
Sbjct: 832 GDLRIVEAVDVPELRHLRDVVVFPKSGDRDIPSMCSGGDLDGDDYFIIWDERLVPPPEER 891
Query: 517 -FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQC 575
+PPM+Y RD+T +D+ +F ++ N SL I +AH+ HAD +S C
Sbjct: 892 SYPPMNYEAEKSLDPDRDVTADDLRRFFVLHMKNHSLPTIAHAHLAHADCL--GVKSEVC 949
Query: 576 LELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIA 635
+ELA+L + AVD+ KTG+ A + GL + YP FMEK + Y S R++GKLY V
Sbjct: 950 IELARLHSQAVDYPKTGIPAVVRRGLIPKQYPHFMEKSTRRTYHSGRILGKLYDKVHQAT 1009
Query: 636 PPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEI 695
A F + + Y D + A + KT+YD + +M I TE E+
Sbjct: 1010 FDPAYEMVFDSRI-LNKYKLDAAT------LRKARQMKTKYDQAMRRIMGQGDIGTEFEV 1062
Query: 696 LSGCIMEMAK 705
S ++ +
Sbjct: 1063 FSSFVLSRPR 1072
>gi|260801457|ref|XP_002595612.1| hypothetical protein BRAFLDRAFT_64722 [Branchiostoma floridae]
gi|229280859|gb|EEN51624.1| hypothetical protein BRAFLDRAFT_64722 [Branchiostoma floridae]
Length = 1207
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 289/769 (37%), Positives = 413/769 (53%), Gaps = 89/769 (11%)
Query: 34 LSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFV 93
L R+ ++ PA L YV +V+VTP+ + F PEI NR++R Y +E FLR+SF+
Sbjct: 273 LGRQEMSLPAT-----LRYVRRVIVTPTTLLFLQPEIMFENRMLRDYGEEF--FLRVSFL 325
Query: 94 DEDLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNS 153
DE KL + + L EE I+ RV + L+ G+ +G++ + LA SNSQ++ +
Sbjct: 326 DEGFQKLQGGIATGL----EEE---DIFARVRNVLQTGVRVGERYYRFLAASNSQLRQHG 378
Query: 154 MWMFASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREAL-HVDSSDIEIIPDV 212
+W F+ + TA IR MGDF + A Y AR+GQ F ++ + +V ++ +EI D+
Sbjct: 379 VWFFSDDGKNTAESIRAEMGDFSGCRCPATYLARMGQCFSTTEPTVANVGNNAVEI-SDI 437
Query: 213 EVEDDGIT---YCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTS 269
D + YCFSDGIGKIS +LA KG +
Sbjct: 438 TGGYDPVNRKPYCFSDGIGKISKDLAR-----------------------KGEI------ 468
Query: 270 STKLSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVA 329
+ R SM K+ S ++I S FLNRQ+IT+LS LG+ D VF++ Q+E +
Sbjct: 469 ---MQYRSSMNKFWSLHDVIEICTTSHPGRLFLNRQVITILSQLGVPDIVFQQLQQERLF 525
Query: 330 QLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELR 389
+L + A EAL + + + LL G + EPF MLQ S++ E+R
Sbjct: 526 ELADMFLLETSAAEALCQRAQMKGLP-YRRLLKMGVQLTTEPFFRSMLQKIYKSSVGEIR 584
Query: 390 TRTRIFI--QNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGK 447
R RI I + GR M+G LDETGTLE GQVFVQ + N+ G++ V+EG
Sbjct: 585 RRARIGIPPEYGRIMLGVLDETGTLEYGQVFVQYT---------EDIANQDGKVRVLEGD 635
Query: 448 VVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCW 507
VVV + PCLHPGD+R L+A+DVP+L+HMVD +VFPAKG RPH NE +G DLDGD +FV W
Sbjct: 636 VVVTRTPCLHPGDVRKLQAIDVPALYHMVDVIVFPAKGPRPHPNEMTGGDLDGDDFFVTW 695
Query: 508 DHELI---PPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHAD 564
+LI P Q PM + +P K ++TI+ + ++ DYI ND LG+I NAH+V AD
Sbjct: 696 LPDLIFNGPNEQ--PMHFR-SPTKREVPNVTIKHLIDFIVDYIKNDRLGLIANAHLVFAD 752
Query: 565 LEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVI 624
EP S+ C LA + AVDF KTGV + R YPDFM K+DKT S+RV+
Sbjct: 753 TEPMGIFSDVCQRLAVKHSDAVDFPKTGVCPDLDKTERPLEYPDFMGKRDKTTRRSERVL 812
Query: 625 GKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLM 684
GK+YR + I ++ V D + + Y+ A + + Y+++L +LM
Sbjct: 813 GKMYRECQMIENVCTQVER-KGTVEQVHPDYGLVIGEHVSYVKKARRSRDRYNDQLRSLM 871
Query: 685 DYYGIKTEAEILSGCIMEMAKSFD---KKRDLEAII-FAVKSLKKEARAWFNKKNESDSS 740
YGI+TE+E +SGCI+++ K D ++ ++E + ++ L+K R F ++ + S
Sbjct: 872 AQYGIETESEAVSGCIVKLHKHMDDRYERYEIERVAKVRIEDLRKRTRQDFFEEFGGEES 931
Query: 741 ----HEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKL 785
H V KASAWY V Y LSFPW I D L
Sbjct: 932 VELDHPHVLKKASAWYTVTYSDP-----------DAKLLSFPWVIGDIL 969
>gi|115402503|ref|XP_001217328.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114189174|gb|EAU30874.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 1309
Score = 424 bits (1090), Expect = e-115, Method: Compositional matrix adjust.
Identities = 250/671 (37%), Positives = 376/671 (56%), Gaps = 40/671 (5%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDL-DKLYSTVLSPLIS 110
Y+ VTPS VY+ P + +SNR++R Y + D FLR+ F DE L ++YST
Sbjct: 447 YIRSARVTPSTVYYETPSMDMSNRIIRHYIEYADRFLRVRFTDEKLLGRIYSTT-----D 501
Query: 111 STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRE 170
+T +E ++ RV L NGIVIGD+++E LAF NSQ +++ + FA P LTAA+IR
Sbjct: 502 NTMDE----VFTRVKRALANGIVIGDRRYEFLAFGNSQFREHGAYFFAPLPNLTAANIRA 557
Query: 171 SMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGIT--YCFSDGIG 228
MG F DI+NVAK+AARLGQ F ++R EI DD + Y FSDG+G
Sbjct: 558 WMGHFDDIRNVAKHAARLGQCFSTTRAIFGCPIKVQEI-------DDIVRNGYRFSDGVG 610
Query: 229 KISAELAEIVAKNCGFTIYT---PSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKS 284
+IS LA++V + PS FQ R GG KG++ V P + + + +RKS K+ +
Sbjct: 611 RISKFLAQMVMSELKIKTPSGEPPSVFQFRLGGCKGILTVSPQAQRQEVHIRKSQAKFTA 670
Query: 285 ESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKA-HE 343
L+I+ S++ LNRQLI +LSTLGIRD +F +K R + L+ L + KA H
Sbjct: 671 THNGLEIIRWSQFTAASLNRQLIIVLSTLGIRDRIFHEKLRAVLWGLNEALKNDAKAIHL 730
Query: 344 ALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMM 403
+ + T + ++++ G++ EPF +L +RA +L L+ + +I I G +
Sbjct: 731 LRRYVDPNQRTLTISQMVVDGFRRTEEPFATSVLTLWRAWHLKYLKDKAKITIDKGACVF 790
Query: 404 GCLDETGTLES---------GQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNP 454
GC+DETGTL+ F Q A+ FL ++ G+ V++G ++A+NP
Sbjct: 791 GCMDETGTLKGYFHEKIPDRDAPFEQRFAALPEIFLQIPNQDKGGKYEVIQGMCILARNP 850
Query: 455 CLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP 514
LH GD+RV++AVDVP+L H+ D VV P G R + CSG DLDGD Y V WD +LIP
Sbjct: 851 SLHSGDIRVVKAVDVPALRHLQDVVVLPQTGDRDIASMCSGGDLDGDDYVVIWDQDLIPK 910
Query: 515 LQF-PPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSN 573
F PPM+YT + L RD+T++++ +F Y+ ND L I +AH+ AD +
Sbjct: 911 DWFRPPMNYTTNKARDLDRDVTVDEITSFFVTYMKNDCLPTIAHAHLAWADRLDNGVDEE 970
Query: 574 QCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKD 633
+C+ LA+L + AVD++K G A + L +++P FMEK+ + Y+S +++G+LY AV+
Sbjct: 971 KCIRLAQLHSDAVDYNKNGTPAHMTRNLEPKLWPHFMEKKTEKVYKSGKILGQLYDAVER 1030
Query: 634 IAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEA 693
+ + K F + + + + ED A K +YD L +M + IKTE
Sbjct: 1031 VNFVPSLEKPFDRRI------LNSRIPVAEDLYQFARDMKKDYDIALRRIMAQHEIKTEF 1084
Query: 694 EILSGCIMEMA 704
E+ S ++ A
Sbjct: 1085 EVWSTFVLSHA 1095
>gi|238015130|gb|ACR38600.1| unknown [Zea mays]
Length = 525
Score = 424 bits (1089), Expect = e-115, Method: Compositional matrix adjust.
Identities = 227/535 (42%), Positives = 323/535 (60%), Gaps = 47/535 (8%)
Query: 279 MLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDP 338
M K++S+ST L+I SK QPC++NR++I+LLSTLGI+D VFE Q++ + + D +LT+
Sbjct: 1 MKKFESKSTMLNITNWSKSQPCYVNREIISLLSTLGIKDEVFESMQQDDMHESDGMLTNK 60
Query: 339 LKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQN 398
A L + G +T ++L+ GY+P EP+LLM+L+ RA+ L ++RTR +I +Q
Sbjct: 61 EAALSVLGKIGGG-DTKTAADMLLQGYEPSSEPYLLMILKAHRANRLTDIRTRCKIHVQK 119
Query: 399 GRAMMGCLDETGTLESGQVFVQCSASRRREFLDNS---CNNRSGELGVVEGKVVVAKNPC 455
GR ++GCLDET LE GQV+++ + + + + CN+ G+ V+ GKV + KNPC
Sbjct: 120 GRVLIGCLDETCKLEYGQVYIRITKNHKEQKYSEQPFFCND-DGKTAVIVGKVAITKNPC 178
Query: 456 LHPGDMRVLRAVDVPSL--HHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP 513
LHPGD+RVL AV P L ++DCVVFP +G+RPH NECSG DLDGD++F+ WD +LIP
Sbjct: 179 LHPGDVRVLEAVYDPGLDARGLIDCVVFPQRGERPHPNECSGGDLDGDLFFITWDDKLIP 238
Query: 514 PLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSN 573
PMDYT +++ +T+E+++++F Y++ND+LG I AH++HAD +P KARS
Sbjct: 239 EKVDAPMDYTATRPRIMDHAVTLEEIQKHFVSYMINDTLGAISTAHLIHADRDPLKARSP 298
Query: 574 QCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYR---- 629
+C++LA L ++AVDF+KTG A +P LR +PDFME+ ++ Y S V+GKLYR
Sbjct: 299 ECVQLAALHSMAVDFAKTGAPAEMPLALRPREFPDFMERWERPMYVSNGVLGKLYRAALR 358
Query: 630 ------AVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNL 683
A+ PP+ YD D+EV GF++++ A + Y RLG L
Sbjct: 359 HEEDAEALLPAGPPSCV------------YDPDLEVAGFDEFLDAAEERYEAYAERLGAL 406
Query: 684 MDYYGIKTEAEILSGCIMEMAKSF--DKKRDLEA---IIFAVKSLKKEARAWFNKKNESD 738
M YY + E EIL+G I D KR E II AV +L E R W E D
Sbjct: 407 MTYYSAEREDEILTGNIRNKLVYLRRDNKRYFEMKDRIIAAVDALHAEVRGWLRACKEDD 466
Query: 739 SSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIKRGKQ 793
+S ASAWYHV YHP G + F SFPW I D L+ IK ++
Sbjct: 467 ASR-----VASAWYHVTYHPDRRGEKR--------FWSFPWIICDTLLAIKAARR 508
>gi|326471540|gb|EGD95549.1| RNA-directed RNA polymerase [Trichophyton tonsurans CBS 112818]
Length = 1605
Score = 421 bits (1081), Expect = e-114, Method: Compositional matrix adjust.
Identities = 252/695 (36%), Positives = 389/695 (55%), Gaps = 46/695 (6%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISS 111
Y+ VTPS +YF+ P + SNRV+R Y + D FLR+ F DE + I+S
Sbjct: 615 YMRSATVTPSTIYFNTPTVDTSNRVIRHYIEYADKFLRVRFTDEKYEGR--------INS 666
Query: 112 TNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRES 171
T ++ RV T+ NGI +GD+ +E LAF NSQ +++ + FAS P LTAA+IR
Sbjct: 667 TYNNCMDEVFTRVKRTMTNGITVGDRHYEFLAFGNSQFREHGAYFFASLPNLTAANIRAW 726
Query: 172 MGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKIS 231
MG F DIK VAK+AARLG+ F ++R + EI EVE +G Y FSDG+G+IS
Sbjct: 727 MGHFSDIKIVAKHAARLGRCFSTTRAVTGCPVTVREID---EVERNG--YIFSDGVGRIS 781
Query: 232 AELAEIVAKNCGFTIYTPS-----AFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSE 285
LA+++ F + TPS FQ R GG KG++ V P + + + +RKS K+ +
Sbjct: 782 KFLAQMIMTE--FKLQTPSEEPPSVFQFRLGGCKGILTVSPEAQRREVHIRKSQYKFAAI 839
Query: 286 STSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL 345
L+I+ S++ LNRQLI +LS LG+ D +F +K R + ++ +T KA L
Sbjct: 840 HNGLEIIRWSQFAAAHLNRQLIVVLSALGVSDEIFIQKLRLMLEDMEQAMTSETKAMSML 899
Query: 346 E-LMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMG 404
+ + + T +L +++ G++ +PF+ +L+ +RA + L+ + ++FI G + G
Sbjct: 900 QKRVDPNQMTLILAQMVHDGFQGSCDPFVKSLLELWRAWQIKYLKEKAKVFIDQGACLFG 959
Query: 405 CLDETGTL----ESGQVFVQCSASRRREFLDNSC-----NNRSGELGVVEGKVVVAKNPC 455
CLDET TL E + ++ + R E+L N + V+EG ++A+NP
Sbjct: 960 CLDETATLKGYHEKKRPSIEATYEERLEYLPEIFVQVFDNEEEKKYRVIEGPCILARNPS 1019
Query: 456 LHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP-P 514
LHPGD+RV+RAVDVP+LHH+ D +VFP G R + CSG DLDGD Y V WD +L+P P
Sbjct: 1020 LHPGDIRVVRAVDVPALHHLKDVIVFPQTGDRDVPSTCSGGDLDGDDYIVIWDQDLVPLP 1079
Query: 515 LQF--PPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARS 572
+ PMDYT + + L RD+T+ D+ +F Y+ ND L I +AH+ AD D
Sbjct: 1080 KDWFREPMDYTASNAQSLTRDVTVNDITSFFVTYMKNDRLPQIAHAHLAFADYLEDGVND 1139
Query: 573 NQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDK---TCYESQRVIGKLYR 629
+C++LA+L + AVD++K+G+ A + L +P FMEK+ K Y+S++++G++Y
Sbjct: 1140 ERCIQLAQLHSAAVDYNKSGIPANMTRDLVPRKWPHFMEKKYKPKEAQYQSKKILGQIYD 1199
Query: 630 AVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGI 689
V+ + F + + + D+ V ED + A K K YD + +M + I
Sbjct: 1200 IVERVEFRPKLEAPFDERI----LNCDISVS--EDMVLAAKKLKALYDADMRRIMAQHEI 1253
Query: 690 KTEAEILSGCIM---EMAKSFDKKRDLEAIIFAVK 721
KTE E+ S ++ M+K + +L I A++
Sbjct: 1254 KTEFEVWSTFVLGHANMSKDYKFHEELGQISSALR 1288
>gi|302505092|ref|XP_003014767.1| hypothetical protein ARB_07328 [Arthroderma benhamiae CBS 112371]
gi|291178073|gb|EFE33864.1| hypothetical protein ARB_07328 [Arthroderma benhamiae CBS 112371]
Length = 1296
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 252/695 (36%), Positives = 390/695 (56%), Gaps = 46/695 (6%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISS 111
Y+ VTPS +YF+ P + SNRV+R Y + D FLR+ F DE + I+S
Sbjct: 305 YMRSATVTPSTIYFNTPTVDTSNRVIRHYIEYADRFLRVRFTDEKYEGR--------INS 356
Query: 112 TNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRES 171
T ++ RV T+ NGI +GD+ +E LAF NSQ +++ + FAS P LTAA+IR
Sbjct: 357 TYNNCMDEVFTRVKRTMTNGITVGDRHYEFLAFGNSQFREHGAYFFASLPNLTAANIRAW 416
Query: 172 MGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKIS 231
MG F DIK VAK+AARLGQ F ++R + EI EVE +G Y FSDG+G+IS
Sbjct: 417 MGHFSDIKIVAKHAARLGQCFSTTRAVTGCPVTVREI---DEVERNG--YIFSDGVGRIS 471
Query: 232 AELAEIVAKNCGFTIYTPS-----AFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSE 285
LA+++ F + TPS FQ R GG KG++ V P + + + +RKS K+ +
Sbjct: 472 KFLAQMIMTE--FKLQTPSEEPPSVFQFRLGGCKGILTVSPEAQRREVHIRKSQYKFAAI 529
Query: 286 STSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL 345
L+I+ S++ LNRQLI +LS LG+ D++F +K R + L+ +T KA L
Sbjct: 530 HNGLEIIRWSQFAAAHLNRQLIVVLSALGVSDNIFIEKLRLMLEDLEQAMTSETKAMSML 589
Query: 346 E-LMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMG 404
+ + + T +L +++ G++ +PF+ +L+ +RA + L+ + ++FI G + G
Sbjct: 590 QKRVDPNQMTLLLAQMVHDGFQGSCDPFVKSLLELWRAWQIKYLKEKAKVFIDQGACLFG 649
Query: 405 CLDETGTL----ESGQVFVQCSASRRREFLDNSC-----NNRSGELGVVEGKVVVAKNPC 455
CLDET TL E + ++ + R E+L N + V+EG ++A+NP
Sbjct: 650 CLDETATLKGYYEKKRPSIEATYEERLEYLPEIFVQVFDNEEEKKYRVIEGPCILARNPS 709
Query: 456 LHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP-P 514
LHPGD+RV+RAV+VP+LHH+ D +VFP G R + CSG DLDGD Y V WD +L+P P
Sbjct: 710 LHPGDIRVVRAVNVPALHHLKDVIVFPQTGDRDVPSTCSGGDLDGDDYIVIWDQDLVPLP 769
Query: 515 LQF--PPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARS 572
+ PMDYT + + L RD+T+ D+ +F Y+ ND L I +AH+ AD D
Sbjct: 770 KDWFREPMDYTASNAQSLTRDVTVNDITSFFVTYMKNDRLPQIAHAHLAFADYLEDGVND 829
Query: 573 NQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDK---TCYESQRVIGKLYR 629
+C++LA+L + AVD++K+G+ A + L +P FMEK+ K Y+S++++G++Y
Sbjct: 830 ERCIQLAQLHSAAVDYNKSGIPANMTRDLVPRKWPHFMEKKYKPKEAQYQSKKILGQIYD 889
Query: 630 AVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGI 689
V+ + F + + + D+ V E+ + A K K YD + +M + I
Sbjct: 890 IVERVEFRPKLEAPFDERI----LNCDISVS--EEMVLAAKKLKGLYDADMRRIMAQHEI 943
Query: 690 KTEAEILSGCIM---EMAKSFDKKRDLEAIIFAVK 721
KTE E+ S ++ M+K + +L I A++
Sbjct: 944 KTEFEVWSTFVLGHANMSKDYKFHEELGQISSALR 978
>gi|407918335|gb|EKG11606.1| RNA-dependent RNA polymerase eukaryotic-type [Macrophomina phaseolina
MS6]
Length = 1511
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 245/674 (36%), Positives = 379/674 (56%), Gaps = 43/674 (6%)
Query: 51 IYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLIS 110
+Y +TPS + F+ P + +SNR++R Y D FLR+ F +E I
Sbjct: 429 VYSRSANITPSTITFASPTMEISNRIIREYLRFSDRFLRVKFTEEKPRGK--------IR 480
Query: 111 STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA-------SRPEL 163
S+ +++ T ++ RV TLRNGI IGD+ +E LAF NSQ +++ + FA +
Sbjct: 481 SSRDDKDTELFTRVWRTLRNGIAIGDRHYEFLAFGNSQFREHGAYFFAPIEDDLCDENNI 540
Query: 164 TAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCF 223
T +DIR MGDF +I+ VA+YA+R+GQ F ++REA V + + ++ +G Y F
Sbjct: 541 TPSDIRMLMGDFDEIQEVARYASRMGQCFSTTREATSVKA---HVSGHEDIMRNG--YIF 595
Query: 224 SDGIGKISAELAEIVAKNCGFTIYT---PSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSM 279
+DG+GKISA LA +A+ G PS FQ R GG KGV+AV + ++ +R+S
Sbjct: 596 TDGVGKISAALAVKIAQEFGHPTAVEDPPSVFQFRLGGCKGVLAVSKELGADEIHIRRSQ 655
Query: 280 LKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPL 339
K+ + S L+I+ S++ LNRQLI +L G+ + VF KK ++ ++ L +T +
Sbjct: 656 DKFPAPSEGLEIIKWSQFATATLNRQLIIILDARGVPNGVFMKKLQDQLSDLKKAMTSEV 715
Query: 340 KAHEALE-LMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQN 398
A L+ + S + + L +++ G+ EPFL+ +L +R ++ L+ + R+F+
Sbjct: 716 VALRLLQRFVDSNQVSLTLAGMVLDGFMGIKEPFLMSVLHLWRTWSIKYLKEKARLFVGE 775
Query: 399 GRAMMGCLDETGTLESGQVFVQCSASRRRE-----FLDNSCNNRSGELGVVEGKVVVAKN 453
G ++GCLDET +L Q S + F+ S N G ++EG +VA+N
Sbjct: 776 GAFLLGCLDETASLHGHFYSEQNWKSLQTNLLPQIFVQVSDINHPGRYKIIEGVCIVARN 835
Query: 454 PCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP 513
P LHPGD+RV++AV+ P LHH+ + VVFP G R N CSG DLDGD Y V WD ELIP
Sbjct: 836 PSLHPGDVRVVQAVNQPKLHHLKNVVVFPQTGDRDIPNMCSGGDLDGDDYMVVWDKELIP 895
Query: 514 PLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSN 573
+ PMD+TP P+K +T+E + ++F +YI NDSLGVI NAH+ AD E + S
Sbjct: 896 QKNYKPMDFTP-PQKQTVEKVTMEHITKFFVEYIKNDSLGVIANAHLAAADFEDEGVMSK 954
Query: 574 QCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEK-----QDKTCYESQRVIGKLY 628
+CLELA++ + AVD+ K+GVAA + L YP FM+ ++ CYES++++G+L+
Sbjct: 955 RCLELARIHSTAVDYPKSGVAAIMDKRLAPRRYPHFMQNNFRNLENGRCYESKKILGQLF 1014
Query: 629 RAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYG 688
AVK++ F + + +Y+ + + A K YD + LM +
Sbjct: 1015 DAVKEVDFDPQYDAPFDSRI-LNAYNLEPAT------LARAGALKVLYDAAVRRLMAQHD 1067
Query: 689 IKTEAEILSGCIME 702
I+TE E+ S I++
Sbjct: 1068 IQTEFEVWSTFILK 1081
>gi|238505489|ref|XP_002383969.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus flavus
NRRL3357]
gi|220690083|gb|EED46433.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus flavus
NRRL3357]
Length = 1353
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 247/673 (36%), Positives = 378/673 (56%), Gaps = 37/673 (5%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISS 111
Y++ +TPS +Y++ P + +SNRV+R + + D FLR+ F DE L I+S
Sbjct: 414 YMHSARITPSTIYYNTPTVDISNRVIRRFIEHADRFLRVRFTDEKL--------LGRINS 465
Query: 112 TNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRES 171
T + I+ R+ L NGIVIGD+++E LAF NSQ +++ + FA P LTAA+IR
Sbjct: 466 TTDSTMDEIFTRIKRALTNGIVIGDRRYEFLAFGNSQFREHGAYFFAPLPNLTAANIRAW 525
Query: 172 MGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKIS 231
MG F I+NVAK+AARLGQ F ++R + ++++ +VE +G Y FSDG+G+IS
Sbjct: 526 MGHFNSIRNVAKHAARLGQCFSTTRA---IAGCPVDVVKIEDVERNG--YNFSDGVGRIS 580
Query: 232 AELAEIVAKNCGFTIYT---PSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSEST 287
LA++ T PSAFQ R GG KG++AV + + + +RKS K+ +
Sbjct: 581 RFLAQMSMSELKIKTPTGEPPSAFQFRLGGCKGMLAVSSEAQRQEVHIRKSQFKFAAIHN 640
Query: 288 SLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLD-AILTDPLKAHEALE 346
L+I+ S++ LNRQLI +LSTLGI D VF K + LD A+ +DP + +
Sbjct: 641 GLEIVRWSQFSMATLNRQLIIVLSTLGIPDQVFHAKLHTMLQGLDQALESDPQAIYWLKK 700
Query: 347 LMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCL 406
+ + T + ++++ G++ EPFL +L +RA +L L+ + RI + G ++GC+
Sbjct: 701 YVDPNQMTLTISQMVLDGFRRSKEPFLTSVLTLWRAWHLKYLKEKARIAVDQGACLLGCM 760
Query: 407 DETGTLE---------SGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLH 457
DETG L+ + + +A+ F+ S + V+EG ++A+NP LH
Sbjct: 761 DETGLLQGYFHDKVPGNDASVEEKTAALPEIFVQVSRPEADKKSEVIEGVCILARNPSLH 820
Query: 458 PGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQF 517
PGD+RV+RAV+VP L H+ D VV P G R + CSG DLDGD Y V WD +L+P F
Sbjct: 821 PGDIRVVRAVNVPQLRHLQDVVVLPQTGDRDIASMCSGGDLDGDDYIVIWDQDLLPKDWF 880
Query: 518 -PPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCL 576
PM YT + L RD+T+ D+ +F Y+ ND L I +AH+ AD D +C+
Sbjct: 881 REPMKYTSNKAQDLDRDVTVNDITSFFVTYMKNDFLPRIAHAHLALADFLEDGVNEEKCI 940
Query: 577 ELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKT---CYESQRVIGKLYRAVKD 633
LA+L + AVD++KTG+ A + L +P FMEK +K Y S +++G+LY AV+
Sbjct: 941 RLAQLHSDAVDYNKTGIPAILTRNLEPRKWPHFMEKFNKPKDRIYHSNKILGQLYDAVER 1000
Query: 634 IAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEA 693
I + F K + + E++ +D +T A K +YD+ + +M + IKTE
Sbjct: 1001 IDFVPSLEMPFDKRL------LNCEIEVPDDLLTFAKNLKGQYDDAMRRIMAQHEIKTEF 1054
Query: 694 EILSGCIMEMAKS 706
EI S ++ A +
Sbjct: 1055 EIWSTFVLGHANT 1067
>gi|83773394|dbj|BAE63521.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1458
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 247/673 (36%), Positives = 378/673 (56%), Gaps = 37/673 (5%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISS 111
Y++ +TPS +Y++ P + +SNRV+R + + D FLR+ F DE L I+S
Sbjct: 519 YMHSARITPSTIYYNTPTVDISNRVIRRFIEHADRFLRVRFTDEKLLGR--------INS 570
Query: 112 TNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRES 171
T + I+ R+ L NGIVIGD+++E LAF NSQ +++ + FA P LTAA+IR
Sbjct: 571 TTDSTMDEIFTRIKRALTNGIVIGDRRYEFLAFGNSQFREHGAYFFAPLPNLTAANIRAW 630
Query: 172 MGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKIS 231
MG F I+NVAK+AARLGQ F ++R + ++++ +VE +G Y FSDG+G+IS
Sbjct: 631 MGHFNSIRNVAKHAARLGQCFSTTRA---IAGCPVDVVKIEDVERNG--YNFSDGVGRIS 685
Query: 232 AELAEIVAKNCGFTIYT---PSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSEST 287
LA++ T PSAFQ R GG KG++AV + + + +RKS K+ +
Sbjct: 686 RFLAQMSMSELKIKTPTGEPPSAFQFRLGGCKGMLAVSSEAQRQEVHIRKSQFKFAAIHN 745
Query: 288 SLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLD-AILTDPLKAHEALE 346
L+I+ S++ LNRQLI +LSTLGI D VF K + LD A+ +DP + +
Sbjct: 746 GLEIVRWSQFSMATLNRQLIIVLSTLGIPDQVFHAKLHTMLQGLDQALESDPQAIYWLKK 805
Query: 347 LMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCL 406
+ + T + ++++ G++ EPFL +L +RA +L L+ + RI + G ++GC+
Sbjct: 806 YVDPNQMTLTISQMVLDGFRRSKEPFLTSVLTLWRAWHLKYLKEKARIAVDQGACLLGCM 865
Query: 407 DETGTLE---------SGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLH 457
DETG L+ + + +A+ F+ S + V+EG ++A+NP LH
Sbjct: 866 DETGLLQGYFHDKVPGNDASVEEKTAALPEIFVQVSRPEADKKSEVIEGVCILARNPSLH 925
Query: 458 PGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQF 517
PGD+RV+RAV+VP L H+ D VV P G R + CSG DLDGD Y V WD +L+P F
Sbjct: 926 PGDIRVVRAVNVPQLRHLQDVVVLPQTGDRDIASMCSGGDLDGDDYIVIWDQDLLPKDWF 985
Query: 518 -PPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCL 576
PM YT + L RD+T+ D+ +F Y+ ND L I +AH+ AD D +C+
Sbjct: 986 REPMKYTSNKAQDLDRDVTVNDITSFFVTYMKNDFLPRIAHAHLALADFLEDGVNEEKCI 1045
Query: 577 ELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKT---CYESQRVIGKLYRAVKD 633
LA+L + AVD++KTG+ A + L +P FMEK +K Y S +++G+LY AV+
Sbjct: 1046 RLAQLHSDAVDYNKTGIPAILTRNLEPRKWPHFMEKFNKPKDRIYHSNKILGQLYDAVER 1105
Query: 634 IAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEA 693
I + F K + + E++ +D +T A K +YD+ + +M + IKTE
Sbjct: 1106 IDFVPSLEMPFDKRL------LNCEIEVPDDLLTFAKNLKGQYDDAMRRIMAQHEIKTEF 1159
Query: 694 EILSGCIMEMAKS 706
EI S ++ A +
Sbjct: 1160 EIWSTFVLGHANT 1172
>gi|302658845|ref|XP_003021121.1| hypothetical protein TRV_04770 [Trichophyton verrucosum HKI 0517]
gi|291185002|gb|EFE40503.1| hypothetical protein TRV_04770 [Trichophyton verrucosum HKI 0517]
Length = 1587
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 250/695 (35%), Positives = 388/695 (55%), Gaps = 46/695 (6%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISS 111
Y+ VTPS +YF+ P + SNRV+R Y + D FLR+ F DE + I+S
Sbjct: 596 YMRSATVTPSTIYFNTPTVDTSNRVIRHYIEYADRFLRVRFTDEKYEGR--------INS 647
Query: 112 TNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRES 171
T ++ RV T+ NGI +GD+ +E LAF NSQ +++ + FAS P LTAA+IR
Sbjct: 648 TYNNCMDEVFTRVKRTMTNGITVGDRHYEFLAFGNSQFREHGAYFFASLPNLTAANIRAW 707
Query: 172 MGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKIS 231
MG F DIK AK+AARLGQ F ++R + EI EVE +G Y FSDG+G+IS
Sbjct: 708 MGHFSDIKIAAKHAARLGQCFSTTRAVTGCPVTVREID---EVERNG--YIFSDGVGRIS 762
Query: 232 AELAEIVAKNCGFTIYTPS-----AFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSE 285
LA+++ F + TPS FQ R GG KG++ V P + + + +RKS K+ +
Sbjct: 763 KFLAQMIMTE--FKLQTPSEEPPSVFQFRLGGCKGILTVSPEAQRREVHIRKSQYKFAAI 820
Query: 286 STSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL 345
L+I+ S++ LNRQLI +LS LG+ D++F +K R + L+ +T KA L
Sbjct: 821 HNGLEIIRWSQFAAAHLNRQLIVVLSALGVSDNIFIEKLRLMLEDLEQAMTSETKAMSML 880
Query: 346 E-LMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMG 404
+ + + T +L +++ G++ +PF+ +L+ +RA + L+ + ++FI G + G
Sbjct: 881 QKRVDPNQMTLLLAQMVHDGFQGSCDPFVKSLLELWRAWQIKYLKEKAKVFIDQGACLFG 940
Query: 405 CLDETGTL----ESGQVFVQCSASRRREFLDNSC-----NNRSGELGVVEGKVVVAKNPC 455
CLDET TL E + ++ + R E+L N + V+EG ++A+NP
Sbjct: 941 CLDETATLKGYYEKKRPSIEATYEERLEYLPEIFVQVFDNEEEKKYRVIEGPCILARNPS 1000
Query: 456 LHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPL 515
LHPGD+RV+RAV+VP+LHH+ D +VFP G R + CSG DLDGD Y V WD +L+P
Sbjct: 1001 LHPGDIRVVRAVNVPALHHLKDVIVFPQTGDRDVPSTCSGGDLDGDDYIVIWDQDLVPLS 1060
Query: 516 Q---FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARS 572
+ PMDYT + + L RD+T+ D+ +F Y+ ND L I +AH+ AD D
Sbjct: 1061 KDWFREPMDYTASNAQSLTRDVTVNDITSFFVTYMKNDRLPQIAHAHLAFADYLEDGVND 1120
Query: 573 NQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDK---TCYESQRVIGKLYR 629
+C++LA+L + AVD++K+G+ A + L +P FMEK+ K Y+S++++G++Y
Sbjct: 1121 ERCIQLAQLHSAAVDYNKSGIPANMTRDLVPRKWPHFMEKKYKPKEAQYQSKKILGQIYD 1180
Query: 630 AVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGI 689
V+ + F + + + D+ V E+ + A K K YD + +M + I
Sbjct: 1181 IVERVEFRPKLEAPFDERI----LNCDISVS--EEMVLAAKKLKGLYDADMRRIMAQHEI 1234
Query: 690 KTEAEILSGCIM---EMAKSFDKKRDLEAIIFAVK 721
KTE E+ S ++ M+K + +L I A++
Sbjct: 1235 KTEFEVWSTFVLGHANMSKDYKFHEELGQISSALR 1269
>gi|391863075|gb|EIT72389.1| RNA-directed RNA polymerase QDE-1 [Aspergillus oryzae 3.042]
Length = 1458
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 247/673 (36%), Positives = 378/673 (56%), Gaps = 37/673 (5%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISS 111
Y++ +TPS +Y++ P + +SNRV+R + + D FLR+ F DE L I+S
Sbjct: 519 YMHSARITPSTIYYNTPTVDISNRVIRRFIEHADRFLRVRFTDEKLLGR--------INS 570
Query: 112 TNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRES 171
T + I+ R+ L NGIVIGD+++E LAF NSQ +++ + FA P LTAA+IR
Sbjct: 571 TTDSTMDEIFTRIKRALTNGIVIGDRRYEFLAFGNSQFREHGAYFFAPLPNLTAANIRAW 630
Query: 172 MGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKIS 231
MG F I+NVAK+AARLGQ F ++R + ++++ +VE +G Y FSDG+G+IS
Sbjct: 631 MGHFNSIRNVAKHAARLGQCFSTTRA---IAGCPVDVVKIEDVERNG--YNFSDGVGRIS 685
Query: 232 AELAEIVAKNCGFTIYT---PSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSEST 287
LA++ T PSAFQ R GG KG++AV + + + +RKS K+ +
Sbjct: 686 RFLAQMSMSELKIKTPTGEPPSAFQFRLGGCKGMLAVSSEAQRQEVHIRKSQFKFAAIHN 745
Query: 288 SLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLD-AILTDPLKAHEALE 346
L+I+ S++ LNRQLI +LSTLGI D VF K + LD A+ +DP + +
Sbjct: 746 GLEIVRWSQFSMATLNRQLIIVLSTLGIPDQVFHAKLHTMLQGLDQALESDPQAIYWLKK 805
Query: 347 LMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCL 406
+ + T + ++++ G++ EPFL +L +RA +L L+ + RI + G ++GC+
Sbjct: 806 YVDPNQMTLTISQMVLDGFRRSKEPFLTSVLTLWRAWHLKYLKEKARIAVDQGACLLGCM 865
Query: 407 DETGTLE---------SGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLH 457
DETG L+ + + +A+ F+ S + V+EG ++A+NP LH
Sbjct: 866 DETGLLQGYFHDKVPGNDASVEEKTAALPEIFVQVSRPEADKKSEVIEGVCILARNPSLH 925
Query: 458 PGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQF 517
PGD+RV+RAV+VP L H+ D VV P G R + CSG DLDGD Y V WD +L+P F
Sbjct: 926 PGDIRVVRAVNVPQLRHLQDVVVLPQTGDRDIASMCSGGDLDGDDYIVIWDQDLLPKDWF 985
Query: 518 -PPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCL 576
PM YT + L RD+T+ D+ +F Y+ ND L I +AH+ AD D +C+
Sbjct: 986 REPMKYTSNKAQDLDRDVTVNDITSFFVTYMKNDFLPRIAHAHLALADFLEDGVNEEKCI 1045
Query: 577 ELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKT---CYESQRVIGKLYRAVKD 633
LA+L + AVD++KTG+ A + L +P FMEK +K Y S +++G+LY AV+
Sbjct: 1046 RLAQLHSDAVDYNKTGIPAILTRNLEPRKWPHFMEKFNKPKDRIYHSNKILGQLYDAVER 1105
Query: 634 IAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEA 693
I + F K + + E++ +D +T A K +YD+ + +M + IKTE
Sbjct: 1106 IDFVPSLEMPFDKRL------LNCEIEVPDDLLTFAKNLKGQYDDAMRRIMAQHEIKTEF 1159
Query: 694 EILSGCIMEMAKS 706
EI S ++ A +
Sbjct: 1160 EIWSTFVLGHANT 1172
>gi|317151427|ref|XP_001824654.2| RNA-directed RNA polymerase (Sad-1) [Aspergillus oryzae RIB40]
Length = 1403
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 247/673 (36%), Positives = 378/673 (56%), Gaps = 37/673 (5%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISS 111
Y++ +TPS +Y++ P + +SNRV+R + + D FLR+ F DE L I+S
Sbjct: 464 YMHSARITPSTIYYNTPTVDISNRVIRRFIEHADRFLRVRFTDEKL--------LGRINS 515
Query: 112 TNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRES 171
T + I+ R+ L NGIVIGD+++E LAF NSQ +++ + FA P LTAA+IR
Sbjct: 516 TTDSTMDEIFTRIKRALTNGIVIGDRRYEFLAFGNSQFREHGAYFFAPLPNLTAANIRAW 575
Query: 172 MGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKIS 231
MG F I+NVAK+AARLGQ F ++R + ++++ +VE +G Y FSDG+G+IS
Sbjct: 576 MGHFNSIRNVAKHAARLGQCFSTTRA---IAGCPVDVVKIEDVERNG--YNFSDGVGRIS 630
Query: 232 AELAEIVAKNCGFTIYT---PSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSEST 287
LA++ T PSAFQ R GG KG++AV + + + +RKS K+ +
Sbjct: 631 RFLAQMSMSELKIKTPTGEPPSAFQFRLGGCKGMLAVSSEAQRQEVHIRKSQFKFAAIHN 690
Query: 288 SLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLD-AILTDPLKAHEALE 346
L+I+ S++ LNRQLI +LSTLGI D VF K + LD A+ +DP + +
Sbjct: 691 GLEIVRWSQFSMATLNRQLIIVLSTLGIPDQVFHAKLHTMLQGLDQALESDPQAIYWLKK 750
Query: 347 LMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCL 406
+ + T + ++++ G++ EPFL +L +RA +L L+ + RI + G ++GC+
Sbjct: 751 YVDPNQMTLTISQMVLDGFRRSKEPFLTSVLTLWRAWHLKYLKEKARIAVDQGACLLGCM 810
Query: 407 DETGTLE---------SGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLH 457
DETG L+ + + +A+ F+ S + V+EG ++A+NP LH
Sbjct: 811 DETGLLQGYFHDKVPGNDASVEEKTAALPEIFVQVSRPEADKKSEVIEGVCILARNPSLH 870
Query: 458 PGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQF 517
PGD+RV+RAV+VP L H+ D VV P G R + CSG DLDGD Y V WD +L+P F
Sbjct: 871 PGDIRVVRAVNVPQLRHLQDVVVLPQTGDRDIASMCSGGDLDGDDYIVIWDQDLLPKDWF 930
Query: 518 -PPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCL 576
PM YT + L RD+T+ D+ +F Y+ ND L I +AH+ AD D +C+
Sbjct: 931 REPMKYTSNKAQDLDRDVTVNDITSFFVTYMKNDFLPRIAHAHLALADFLEDGVNEEKCI 990
Query: 577 ELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKT---CYESQRVIGKLYRAVKD 633
LA+L + AVD++KTG+ A + L +P FMEK +K Y S +++G+LY AV+
Sbjct: 991 RLAQLHSDAVDYNKTGIPAILTRNLEPRKWPHFMEKFNKPKDRIYHSNKILGQLYDAVER 1050
Query: 634 IAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEA 693
I + F K + + E++ +D +T A K +YD+ + +M + IKTE
Sbjct: 1051 IDFVPSLEMPFDKRL------LNCEIEVPDDLLTFAKNLKGQYDDAMRRIMAQHEIKTEF 1104
Query: 694 EILSGCIMEMAKS 706
EI S ++ A +
Sbjct: 1105 EIWSTFVLGHANT 1117
>gi|320036523|gb|EFW18462.1| RNA-directed RNA polymerase Rdp1 [Coccidioides posadasii str.
Silveira]
Length = 1444
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 255/738 (34%), Positives = 408/738 (55%), Gaps = 53/738 (7%)
Query: 8 LETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSG 67
LE + + Y+P + + + K +SRR + Y+ VTPS VYF
Sbjct: 454 LEHVASEKHVYYDPKKIFDILFVKPAMSRR--------IPKYCCYMRTARVTPSTVYFGT 505
Query: 68 PEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVLST 127
P + ++NRV+R Y + D FLR+ F DE + + P ++T +E ++ RV T
Sbjct: 506 PSVDITNRVIRHYIEYADRFLRVRFTDEK----FEGRIQPSHNNTMDE----VFTRVKRT 557
Query: 128 LRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAAR 187
+ NGI +GD+ +E LAF NSQ +++ + FAS P LTAA+IR MG F DIK +A++AAR
Sbjct: 558 MMNGITLGDRHYEFLAFGNSQFREHGAYFFASLPHLTAANIRAWMGHFSDIKEIARHAAR 617
Query: 188 LGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIY 247
LGQ F ++R V ++I +++ +G Y FSDG+G+IS LA++V F I
Sbjct: 618 LGQCFSTTRA---VTGCPVQIREIEDIQRNG--YTFSDGVGRISRFLAQMVMTE--FKIK 670
Query: 248 TP-----SAFQIRYGGYKGVVAVDPTSS-TKLSLRKSMLKYKSESTSLDILANSKYQPCF 301
TP S FQ R GG KG++ V P + ++ +RKS K+ + L+++ +S +
Sbjct: 671 TPCGEPPSVFQFRLGGCKGILTVSPEAQRQQVHIRKSQYKFPAIHNGLEVIRHSHFCMAS 730
Query: 302 LNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKA-HEALELMSSGENTNVLKEL 360
LNRQLI +LS+L + D VF +K R + L+ +T +A H + + + T VL E+
Sbjct: 731 LNRQLIVVLSSLEVPDEVFLEKLRMMLGNLELAMTSETQAIHLLHKYIDPNQMTLVLAEM 790
Query: 361 LMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLES------ 414
+ G++ EPF+ +L+ +RA + L+ + +I I+ G + GCLDETGTL+
Sbjct: 791 IQDGFQSSKEPFVTSLLELWRAWQIKYLKEKAKIIIEEGACLFGCLDETGTLKGFFHDNI 850
Query: 415 ---GQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS 471
+ + A F+ S N G+ ++EG ++A+NP LHPGD+RV++AV+ P+
Sbjct: 851 PSKDASYEERLACLPEIFVQISRANNDGKYEIIEGPCIIARNPSLHPGDIRVVKAVNAPA 910
Query: 472 LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFP-PMDYTPAPEKV- 529
LHH+ D +VFP G R + CSG DLDGD Y V WD +L+P F PM+Y P+ + +
Sbjct: 911 LHHLRDVIVFPQTGDRDIPSMCSGGDLDGDDYLVIWDQDLLPKDWFKQPMNYAPSVKALR 970
Query: 530 LARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFS 589
L+RD+T+ D+ +F Y+ ND L I ++H+ AD ++C+ LA+L + AVD++
Sbjct: 971 LSRDVTVNDITSFFVTYMKNDRLAQIAHSHLAWADYLEKGVNDSKCIRLAELHSAAVDYN 1030
Query: 590 KTGVAATIPSGLRVEIYPDFMEKQDK---TCYESQRVIGKLYRAVKDIAPPTATIKSFTK 646
KTG+ A + L +P FMEK+ K Y SQ+++GKLY V+ + F
Sbjct: 1031 KTGIPAKMTKDLAPRKWPHFMEKKHKPKDAQYISQKILGKLYDIVERVNYRPKLEAPFDD 1090
Query: 647 EVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIM---EM 703
+ ++ +EV+ +D + A + K YD + +M + IKTE E+ S ++ M
Sbjct: 1091 RI----LNSGIEVN--DDLLAVAAELKVLYDADMCRIMAQHEIKTEFEVWSTFVLSHSNM 1144
Query: 704 AKSFDKKRDLEAIIFAVK 721
+K + ++ I A++
Sbjct: 1145 SKDYKFHEEIGQISCALR 1162
>gi|327305981|ref|XP_003237682.1| RNA-directed RNA polymerase [Trichophyton rubrum CBS 118892]
gi|326460680|gb|EGD86133.1| RNA-directed RNA polymerase [Trichophyton rubrum CBS 118892]
Length = 1604
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 249/695 (35%), Positives = 388/695 (55%), Gaps = 46/695 (6%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISS 111
Y+ VTPS +YF+ P + SNRV+R Y + D FLR+ F DE + I+S
Sbjct: 614 YMRSATVTPSTIYFNTPTVDTSNRVIRHYIEYADRFLRVRFTDEKYEGR--------INS 665
Query: 112 TNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRES 171
T ++ RV T+ NGI +GD+ +E LAF NSQ +++ + FAS P LTAA+IR
Sbjct: 666 TYNNCMDEVFTRVKRTMTNGITVGDRHYEFLAFGNSQFREHGAYFFASLPNLTAANIRAW 725
Query: 172 MGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKIS 231
MG F DIK VAK+AARLGQ F ++R V + + EVE +G Y FSDG+G+IS
Sbjct: 726 MGHFSDIKIVAKHAARLGQCFSTTRA---VTGCPVTVRTIDEVERNG--YIFSDGVGRIS 780
Query: 232 AELAEIVAKNCGFTIYTPS-----AFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSE 285
LA+++ F + TPS FQ R GG KG++ V P + + + +RKS K+ +
Sbjct: 781 KFLAQMIMTE--FKLQTPSEEPPSVFQFRLGGCKGILTVSPEAQRREVHIRKSQYKFAAI 838
Query: 286 STSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL 345
L+I+ S++ LNRQLI +LS LG+ D +F +K R + ++ +T KA L
Sbjct: 839 HNGLEIIRWSQFAAAHLNRQLIVVLSALGVSDEIFIQKLRLMLEDMEQAMTSETKAMSML 898
Query: 346 E-LMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMG 404
+ + + T + +++ G++ +PF+ +L+ +RA + L+ + ++FI G + G
Sbjct: 899 QKRVDPNQMTLLPAQMVHDGFQGSCDPFVKSLLELWRAWQIKYLKEKAKVFIDQGACLFG 958
Query: 405 CLDETGTL----ESGQVFVQCSASRRREFLDNSC-----NNRSGELGVVEGKVVVAKNPC 455
CLDET TL E + ++ + R E+L N + V+EG ++A+NP
Sbjct: 959 CLDETATLKGYYEKKRPSIEATYEERLEYLPEIFVQVFDNEEEKKYRVIEGPCILARNPS 1018
Query: 456 LHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP-P 514
LHPGD+RV+RAV+VP+LHH+ D +VFP G R + CSG DLDGD Y V WD +L+P P
Sbjct: 1019 LHPGDIRVVRAVNVPALHHLKDVIVFPQTGDRDVPSTCSGGDLDGDDYIVIWDQDLVPLP 1078
Query: 515 LQF--PPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARS 572
+ PMDYT + + L RD+T+ D+ +F Y+ ND L I +AH+ AD D
Sbjct: 1079 KDWFREPMDYTASNAQSLNRDVTVNDITSFFVTYMKNDRLPQIAHAHLAFADYLEDGVND 1138
Query: 573 NQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDK---TCYESQRVIGKLYR 629
+C++LA+L + AVD++K+G+ A + L +P FMEK+ K Y+S++++G++Y
Sbjct: 1139 ERCIQLAQLHSAAVDYNKSGIPANMTRDLVPRRWPHFMEKKYKPKEAQYQSKKILGQIYD 1198
Query: 630 AVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGI 689
V+ + F + + + D+ V +D + A K K YD + +M + I
Sbjct: 1199 IVERVEFRPKLEAPFDERI----LNCDISVS--QDMVLAAKKLKALYDADMRRIMAQHEI 1252
Query: 690 KTEAEILSGCIM---EMAKSFDKKRDLEAIIFAVK 721
KTE E+ S ++ M+K + +L I A++
Sbjct: 1253 KTEFEVWSTFVLGHANMSKDYKFHEELGQISSALR 1287
>gi|451852221|gb|EMD65516.1| hypothetical protein COCSADRAFT_354694 [Cochliobolus sativus ND90Pr]
Length = 1365
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 246/666 (36%), Positives = 380/666 (57%), Gaps = 43/666 (6%)
Query: 56 VLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEE 115
V +TP+ ++ + P + SNR++R Y + D F+R+ F DE + + +
Sbjct: 484 VTITPTMMHVATPVMETSNRIIRKYEADADRFIRVRFTDEKSEGQ--------LRNQPNG 535
Query: 116 RHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDF 175
R +++RV ++NGIV+ + +E LAF NSQ ++N + +A +A DIR S+G+F
Sbjct: 536 RAEAVFDRVFRAMKNGIVVAGRYYEFLAFGNSQFRENGAYFYAPTASKSANDIRMSLGEF 595
Query: 176 RDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELA 235
I+ V+K+AARLGQ F ++R A+ V + + I+PDVE + F+DG+GK+S LA
Sbjct: 596 DHIRTVSKFAARLGQCFSTTR-AMGV-TVKLVIVPDVERNG----FVFTDGVGKLSPFLA 649
Query: 236 EIVAKNCGFT-IYT--PSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYKSESTSLDI 291
++ A+ G T +T PS FQ R GG KGV+A+DP + ++ +R+S K+++ T L+I
Sbjct: 650 QMAAQELGLTNAFTDPPSLFQFRLGGSKGVLALDPNLNGNEVHIRRSQYKFRAPHTGLEI 709
Query: 292 LANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL-ELMSS 350
+ +S + + NRQ+I +LS LG++D VF +KQ + + + +TD + A + L + +
Sbjct: 710 IRSSSFATPYFNRQIILVLSYLGVQDAVFLRKQEDMMNDYSSAMTDEIIALQKLRKNIDI 769
Query: 351 GENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETG 410
+ T + +++ G+ EPF++ +L +RA + L+ + RI I NG ++GC+DETG
Sbjct: 770 NQITLTMAAMVLDGFMGSREPFIMSLLALWRACTIKNLKEKARIAIDNGAFLLGCVDETG 829
Query: 411 TLESGQVFVQCSASRRRE---------FLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDM 461
TL+ Q R+ FL S G ++EG ++A+NP LHPGD+
Sbjct: 830 TLKGHLNDPQSRRDATRDEKLATLPEIFLRVSDPESKGHYIIIEGICILARNPSLHPGDV 889
Query: 462 RVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPL-QFPPM 520
RV+RAV+VP+LHH+ + VVFP G R N CSG DLDGD Y V WD +L+P L PPM
Sbjct: 890 RVVRAVNVPALHHLKNVVVFPQTGDRDLANMCSGGDLDGDDYMVLWDRDLVPELINEPPM 949
Query: 521 DYTPAPEKVLARDMTIE--DVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLEL 578
D+T PEK L D I D+ ++F +YI ND+LG I +AH+ AD CLEL
Sbjct: 950 DFT--PEKPLEIDGPISAMDMSKFFVNYIKNDALGPIAHAHLAQADFNEKCIGDAICLEL 1007
Query: 579 AKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQ---DKTCYESQRVIGKLYRAVKDIA 635
A+L + AVDF K+G+ A + LR +P FMEK+ Y S++++G LY VK I
Sbjct: 1008 AELHSRAVDFPKSGIPAEMKRELRPRKWPHFMEKKYLSPHQIYNSKKILGLLYDEVKLID 1067
Query: 636 PPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEI 695
F K + ++++D D E+ + A K YD L LM +GIKTE E
Sbjct: 1068 FEPQWENPFDKRI-LEAFDLDQEL------LDKAASLKLSYDEALRRLMAKHGIKTEFEA 1120
Query: 696 LSGCIM 701
S ++
Sbjct: 1121 WSVFVL 1126
>gi|258573507|ref|XP_002540935.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237901201|gb|EEP75602.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 1521
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 275/825 (33%), Positives = 437/825 (52%), Gaps = 74/825 (8%)
Query: 2 EYIEH-ALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTP 60
E +EH A E L + Y+P++ + + K SRR + Y+ VTP
Sbjct: 532 ELLEHVAGEKLVY-----YDPMKIFDILFVKPATSRR--------IPKYCCYMRTARVTP 578
Query: 61 SKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTI 120
S VYF+ P + +SNRV+R Y + D FLR+ F DE + +SP ++T +E +
Sbjct: 579 STVYFNTPSVDISNRVIRHYIEYADRFLRVRFTDER----FEGRISPSHNNTMDE----V 630
Query: 121 YERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKN 180
+ R+ + NGI +GD+ +E LAF NSQ +++ + FAS P LTA++IR MG F DIK
Sbjct: 631 FTRIKRAMMNGITLGDRHYEFLAFGNSQFREHGAYFFASLPHLTASNIRAWMGHFSDIKE 690
Query: 181 VAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAK 240
+A++AARLGQ F ++R V ++I ++E +G + FSDG+G+IS LA+++
Sbjct: 691 IARHAARLGQCFSTTRA---VTGCPVQIREIEDIERNG--HTFSDGVGRISRFLAQMIMT 745
Query: 241 NCGFTIYTP-----SAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSESTSLDILAN 294
F I TP S FQ R GG KG++ V P + + + +RKS K+ + L+++ +
Sbjct: 746 E--FKIKTPCGEPPSVFQFRLGGCKGILTVSPEAQRREVHIRKSQYKFPAIHNGLEVIRH 803
Query: 295 SKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKA-HEALELMSSGEN 353
S + LNRQLI +LS L + D +F +K R + L+ ++ +A H + + +
Sbjct: 804 SHFSMASLNRQLIVVLSALEVPDEIFIEKLRVMLENLELAMSSEAQAIHLLHKYVDPNQM 863
Query: 354 TNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLE 413
T VL E++ G++ EPF+ +L+ +RA + L+ + +I I++G + GCLDETGTL+
Sbjct: 864 TLVLAEMVQDGFQASKEPFVTSLLELWRAWQIKYLKEKAKIIIEDGACLFGCLDETGTLK 923
Query: 414 ---------SGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVL 464
+ + + S F+ S + G+ V+EG +VA+NP LHPGD+RV+
Sbjct: 924 GFFNDKIPAANASYEEKLESLPEVFVQISRADNGGKYEVIEGPCIVARNPSLHPGDIRVV 983
Query: 465 RAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQF-PPMDYT 523
+AV+VP+LHH+ D VVFP G + + CSG DLDGD Y + WD +L+P F PMDY
Sbjct: 984 KAVNVPALHHLKDVVVFPQTGDKDVPSMCSGGDLDGDDYLIIWDQDLLPKNWFRQPMDYV 1043
Query: 524 PAPE-KVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLS 582
P+ + L+RD+T+ D+ +F Y+ ND L I AH+ AD +C++LA+L
Sbjct: 1044 PSTKAHCLSRDVTVNDITSFFVTYMKNDRLPQIALAHLAWADYLERGVNDPKCMQLAELH 1103
Query: 583 TIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDK---TCYESQRVIGKLYRAVKDIAPPTA 639
+ AVD++KTG+ A + L +P FMEK+ K Y SQ+++G+LY ++ +
Sbjct: 1104 SAAVDYNKTGIPAKMTKDLIPRKWPHFMEKKHKPKEAQYISQKILGQLYDRLERVDYRPK 1163
Query: 640 TIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGC 699
F + + +T +D + A + KT YD + +M + I TE E+ S
Sbjct: 1164 LEADFDERILSSGIETS------DDLLAMATELKTLYDADMRRIMAQHEINTEFEVWSTF 1217
Query: 700 IMEMAKSFDKKRDLEAIIFAVKSLKKEARAW-FNKKNESDSSHEDVYAKASAWYHVAYH- 757
++ A + E I +L++ R F K D H + A A Y V +
Sbjct: 1218 VLSHANMSKDYKFHEEIGQIASALRERFRVLCFEKAGGKDFEH--LAPLAVAMYKVTCNE 1275
Query: 758 -----PSYWGRYKEE-GMN--------RTHFLSFPWCIHDKLIEI 788
+ RY +E G+ + F+SFPW + L +I
Sbjct: 1276 MTQALAASKARYSDETGIQSVSIKHEEKLPFISFPWVLQPVLGKI 1320
>gi|391331492|ref|XP_003740179.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Metaseiulus
occidentalis]
Length = 1286
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 277/776 (35%), Positives = 407/776 (52%), Gaps = 76/776 (9%)
Query: 49 GLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPL 108
G +YV +V VTP+++ ++ NR++R + E +R+ F D++LDKL +VL+
Sbjct: 326 GTVYVRRVFVTPTRMILRFADLHTQNRILRHFDSEYA--IRVCFRDDNLDKLTFSVLN-- 381
Query: 109 ISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPE-LTAAD 167
E+ + V +R+GI IGD+K+ +A S+SQ++D+ +W +A P AA
Sbjct: 382 ----MREKLPFLNHVVGDHIRSGITIGDRKYMYVAASSSQLRDHGVWFYALDPSGFDAAS 437
Query: 168 IRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGI-------- 219
IR+ MGDF +I NVA AR+GQ F S++E +E+ P EV +D I
Sbjct: 438 IRQWMGDFSNISNVATRMARMGQCFSSTQET-------VEVTPLEEVHEDDIWYPEQVHP 490
Query: 220 ----TYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLS 274
YCFSDG GKIS L V + TI PSA QIRY G KG+V +DP+ +L
Sbjct: 491 TSKKPYCFSDGCGKISPSLLSEVWGSLPHTISQPSALQIRYRGCKGMVCLDPSLEGRQLV 550
Query: 275 LRKSMLKYKSEST-SLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQL-D 332
LRKSM+K++ S L+++ S FLNR I +L G++ VF + + E + Q+ D
Sbjct: 551 LRKSMVKFECNSNRKLEVIKWSAPMNMFLNRPFIAILEHHGVKIDVFLRLELEMILQIAD 610
Query: 333 AILTDPLKAHEALELMSSGENTNV-LKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTR 391
+++ + AL +++S T + L G++ +PF ML ++L+ L+ +
Sbjct: 611 SLVCEA----SALRVLTSFVKTPIPFYGLAETGWQLVQDPFFTQMLFDLLKTSLMSLKEK 666
Query: 392 TRIFI--QNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVV 449
I I GR M+G +DETG LE GQVF+Q + F + R VV+ VV
Sbjct: 667 ANIAIPVNEGRNMLGVVDETGLLEYGQVFIQFTEMPSAPFQISQARTR-----VVDADVV 721
Query: 450 VAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDH 509
V K PCLHPGD+R LRAVD+P LHH+ DC+VFPAKGK PH E SGSDLDGD Y W
Sbjct: 722 VTKCPCLHPGDVRRLRAVDIPELHHVRDCIVFPAKGKAPHPFEMSGSDLDGDEYICIWKE 781
Query: 510 ELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDK 569
+LI P Y P V+ + YI ND +G+I NAH+ AD
Sbjct: 782 DLIFEENVEPYLYDDKPLGVVKPYQRPVHEVSFLCSYIANDMIGIISNAHLAWADQR--G 839
Query: 570 ARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQD-KTCYESQRVIGKLY 628
S++CL L ++ A+DF+KTG + + + E +PDFMEK D K Y+S + +G LY
Sbjct: 840 LISDECLALVDKASKALDFAKTGHSVDLHPNEKPERFPDFMEKGDHKHSYQSNKALGILY 899
Query: 629 RAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYG 688
R V+ I T +++ + +EV G++ + DA+ Y+ RL N+MD +G
Sbjct: 900 RTVRQIMSVNDT------QLSSGHKFSPLEVPGWQMFRDDAYAAMRRYNQRLANIMDQHG 953
Query: 689 IKTEAEILSGCIMEMAKSFDKKRDLEAIIFAV-----KSLKKEARAWFNKKNESDSSHED 743
I +E E+ SG I + +FD R +A + + +L +E R F + ++D
Sbjct: 954 IMSEGEVFSGRIGTL-NTFDASRAEKASVALLVDRQKTALMEETREQFFAELKNDCIVLG 1012
Query: 744 VYA----------KASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIK 789
+A KASAW+ A Y + + F SFPWCI L+E K
Sbjct: 1013 AHAAEDRRMLRLQKASAWFMAA--------YALQPLTGGAFYSFPWCIAHVLLEAK 1060
>gi|119192036|ref|XP_001246624.1| hypothetical protein CIMG_00395 [Coccidioides immitis RS]
Length = 1492
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 255/738 (34%), Positives = 407/738 (55%), Gaps = 53/738 (7%)
Query: 8 LETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSG 67
LE + + Y+P + + + K SRR + Y+ VTPS VYF
Sbjct: 502 LEHVASEKHVYYDPKKIFDILFVKPATSRR--------IPKYCCYMRTARVTPSTVYFGT 553
Query: 68 PEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVLST 127
P + ++NRV+R Y + D FLR+ F DE + + P ++T +E ++ RV T
Sbjct: 554 PSVDITNRVIRHYIEYADRFLRVRFTDEK----FEGRIQPSHNNTMDE----VFTRVKRT 605
Query: 128 LRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAAR 187
+ NGI +GD+ +E LAF NSQ +++ + FAS P LTAA+IR MG F DIK +A++AAR
Sbjct: 606 MMNGITLGDRHYEFLAFGNSQFREHGAYFFASLPHLTAANIRAWMGHFSDIKEIARHAAR 665
Query: 188 LGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIY 247
LGQ F ++R V ++I +++ +G Y FSDG+G+IS LA++V F I
Sbjct: 666 LGQCFSTTRA---VTGCPVQIREIEDIQRNG--YTFSDGVGRISRFLAQMVMTE--FKIK 718
Query: 248 TP-----SAFQIRYGGYKGVVAVDPTSS-TKLSLRKSMLKYKSESTSLDILANSKYQPCF 301
TP S FQ R GG KG++ V P + ++ +RKS K+ + L+++ +S +
Sbjct: 719 TPCGEPPSVFQFRLGGCKGILTVSPEAQRQQVHIRKSQYKFPAIHNGLEVIRHSHFCMAS 778
Query: 302 LNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKA-HEALELMSSGENTNVLKEL 360
LNRQLI +LS+L + D VF +K R + L+ +T +A H + + + T VL E+
Sbjct: 779 LNRQLIVVLSSLEVPDEVFLEKLRMMLGNLELAMTSETQAIHLLHKYIDPNQMTLVLAEM 838
Query: 361 LMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLES------ 414
+ G++ EPF+ +L+ +RA + L+ + +I I+ G + GCLDETGTL+
Sbjct: 839 IQDGFQSSKEPFVTSLLELWRAWQIKYLKEKAKIIIEEGACLFGCLDETGTLKGLFHDNI 898
Query: 415 ---GQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS 471
+ + A F+ S N G+ ++EG ++A+NP LHPGD+RV++AV+ P+
Sbjct: 899 PSKDASYEERLACLPEIFVQISRANNDGKYEIIEGPCIIARNPSLHPGDIRVVKAVNAPA 958
Query: 472 LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFP-PMDYTPAPEKV- 529
LHH+ D +VFP G R + CSG DLDGD Y V WD +L+P F PM+Y P+ + +
Sbjct: 959 LHHLRDVIVFPQTGDRDIPSMCSGGDLDGDDYLVIWDQDLLPKDWFKQPMNYAPSVKALR 1018
Query: 530 LARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFS 589
L+RD+T+ D+ +F Y+ ND L I ++H+ AD ++C+ LA+L + AVD++
Sbjct: 1019 LSRDVTVNDITSFFVTYMKNDRLAQIAHSHLAWADYLEKGVNDSKCIRLAELHSAAVDYN 1078
Query: 590 KTGVAATIPSGLRVEIYPDFMEKQDK---TCYESQRVIGKLYRAVKDIAPPTATIKSFTK 646
KTG+ A + L +P FMEK+ K Y SQ+++GKLY V+ + F
Sbjct: 1079 KTGIPAKMTKDLAPRKWPHFMEKKHKPKDAQYISQKILGKLYDIVERVNYRPKLEAPFDD 1138
Query: 647 EVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIM---EM 703
+ ++ +EV+ +D + A + K YD + +M + IKTE E+ S ++ M
Sbjct: 1139 RI----LNSGIEVN--DDLLAVAAELKVLYDADMCRIMAQHEIKTEFEVWSTFVLSHSNM 1192
Query: 704 AKSFDKKRDLEAIIFAVK 721
+K + ++ I A++
Sbjct: 1193 SKDYKFHEEIGQISCALR 1210
>gi|303313157|ref|XP_003066590.1| RNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240106252|gb|EER24445.1| RNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 1445
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 255/738 (34%), Positives = 407/738 (55%), Gaps = 53/738 (7%)
Query: 8 LETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSG 67
LE + + Y+P + + + K SRR + Y+ VTPS VYF
Sbjct: 455 LEHVASEKHVYYDPKKIFDILFVKPATSRR--------IPKYCCYMRTARVTPSTVYFGT 506
Query: 68 PEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVLST 127
P + ++NRV+R Y + D FLR+ F DE + + P ++T +E ++ RV T
Sbjct: 507 PSVDITNRVIRHYIEYADRFLRVRFTDEK----FEGRIQPSHNNTMDE----VFTRVKRT 558
Query: 128 LRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAAR 187
+ NGI +GD+ +E LAF NSQ +++ + FAS P LTAA+IR MG F DIK +A++AAR
Sbjct: 559 MMNGITLGDRHYEFLAFGNSQFREHGAYFFASLPHLTAANIRAWMGHFSDIKEIARHAAR 618
Query: 188 LGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIY 247
LGQ F ++R V ++I +++ +G Y FSDG+G+IS LA++V F I
Sbjct: 619 LGQCFSTTRA---VTGCPVQIREIEDIQRNG--YTFSDGVGRISRFLAQMVMTE--FKIK 671
Query: 248 TP-----SAFQIRYGGYKGVVAVDPTSS-TKLSLRKSMLKYKSESTSLDILANSKYQPCF 301
TP S FQ R GG KG++ V P + ++ +RKS K+ + L+++ +S +
Sbjct: 672 TPCGEPPSVFQFRLGGCKGILTVSPEAQRQQVHIRKSQYKFPAIHNGLEVIRHSHFCMAS 731
Query: 302 LNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKA-HEALELMSSGENTNVLKEL 360
LNRQLI +LS+L + D VF +K R + L+ +T +A H + + + T VL E+
Sbjct: 732 LNRQLIVVLSSLEVPDEVFLEKLRMMLGNLELAMTSETQAIHLLYKYIDPNQMTLVLAEM 791
Query: 361 LMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLES------ 414
+ G++ EPF+ +L+ +RA + L+ + +I I+ G + GCLDETGTL+
Sbjct: 792 IQDGFQSSKEPFVTSLLELWRAWQIKYLKEKAKIIIEEGACLFGCLDETGTLKGFFHDNI 851
Query: 415 ---GQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS 471
+ + A F+ S N G+ ++EG ++A+NP LHPGD+RV++AV+ P+
Sbjct: 852 PSKDASYEERLACLPEIFVQISRANNDGKYEIIEGPCIIARNPSLHPGDIRVVKAVNAPA 911
Query: 472 LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFP-PMDYTPAPEKV- 529
LHH+ D +VFP G R + CSG DLDGD Y V WD +L+P F PM+Y P+ + +
Sbjct: 912 LHHLRDVIVFPQTGDRDIPSMCSGGDLDGDDYLVIWDQDLLPKDWFKQPMNYAPSVKALR 971
Query: 530 LARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFS 589
L+RD+T+ D+ +F Y+ ND L I ++H+ AD ++C+ LA+L + AVD++
Sbjct: 972 LSRDVTVNDITSFFVTYMKNDRLAQIAHSHLAWADYLEKGVNDSKCIRLAELHSAAVDYN 1031
Query: 590 KTGVAATIPSGLRVEIYPDFMEKQDK---TCYESQRVIGKLYRAVKDIAPPTATIKSFTK 646
KTG+ A + L +P FMEK+ K Y SQ+++GKLY V+ + F
Sbjct: 1032 KTGIPAKMTKDLAPRKWPHFMEKKHKPKDAQYISQKILGKLYDIVERVNYRPKLEAPFDD 1091
Query: 647 EVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIM---EM 703
+ ++ +EV+ +D + A + K YD + +M + IKTE E+ S ++ M
Sbjct: 1092 RI----LNSGIEVN--DDLLAVAAELKVLYDADMCRIMAQHEIKTEFEVWSTFVLSHSNM 1145
Query: 704 AKSFDKKRDLEAIIFAVK 721
+K + ++ I A++
Sbjct: 1146 SKDYKFHEEIGQISCALR 1163
>gi|296420862|ref|XP_002839987.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636195|emb|CAZ84178.1| unnamed protein product [Tuber melanosporum]
Length = 1542
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 254/703 (36%), Positives = 392/703 (55%), Gaps = 40/703 (5%)
Query: 44 VALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYST 103
+ L D + K VTPS VYF+ P + ++NRVVR Y + ID FLR+ FVDE
Sbjct: 646 LKLPDHCQLLRKANVTPSTVYFTTPTVEITNRVVRQYSEHIDRFLRVQFVDEKSQGR--- 702
Query: 104 VLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPEL 163
I+ST+++ ++ RV + L +GI IGD+KFE LAF NSQ++++ + FAS L
Sbjct: 703 -----INSTDKKTMHEVFTRVKAALDHGITIGDRKFEFLAFGNSQIREHGAYFFASDDHL 757
Query: 164 TAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCF 223
+AADIR MG F +I+ VAK+AARLGQ F ++R A++ D+ D+ V +G Y F
Sbjct: 758 SAADIRAWMGSFSEIRIVAKHAARLGQCFSTTR-AINGVRVDVRTTEDI-VNAEG--YNF 813
Query: 224 SDGIGKISAELAEIVAKNCGFTIY----TPSAFQIRYGGYKGVVAVDPTSSTK-LSLRKS 278
SDG+GKIS LA ++ + PS FQ R GG KGV+AV P ++ + + +R S
Sbjct: 814 SDGVGKISEFLARLITTELRLRLVDKEPVPSCFQFRLGGRKGVLAVSPDANHREVYIRPS 873
Query: 279 MLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDP 338
LK+++ L+++ SK+ LNRQLI +L++LG DH FE K + + + + DP
Sbjct: 874 QLKFEARHNILEVIRWSKFATAALNRQLIIVLTSLGAPDHYFEDKLQFMLKSYEVAMVDP 933
Query: 339 LKAHEAL-ELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQ 397
A L + E+T + ++ G+ EPF++ +L+ +RA + L+ + +I I+
Sbjct: 934 GVAVRLLCRNVDPNESTLAIAAMIRAGFMDRREPFVMSLLKLWRAWTIKYLKEKAKIMIE 993
Query: 398 NGRAMMGCLDETGTLESGQVFVQCSASRR----------REFLDNSCNNRSGELGVVEGK 447
G ++G +DETGTL+ G + Q S + FL + +R GE ++EG
Sbjct: 994 EGAFVLGVVDETGTLD-GYYYSQDEGSTEDADNPETSLPQIFLQVTDPDRPGESRIIEGP 1052
Query: 448 VVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCW 507
V+A+NP LHPGD+R + AV+ LHH+ + VVF KG R N SG DLDGD Y + W
Sbjct: 1053 CVIARNPSLHPGDVRKVMAVNAKELHHLRNVVVFSQKGDRDLPNMLSGGDLDGDDYIIIW 1112
Query: 508 DHELIPPLQ-FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLE 566
D +L + + PM+Y+ + LARD+ I D+ ++F +Y+ ND LG I NAH+ AD
Sbjct: 1113 DKKLTSCVNNYEPMNYSAQTPRELARDVEIGDITKFFVNYMKNDKLGTIANAHLAWADKR 1172
Query: 567 PDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGK 626
+ +S++C LA L + AVD+ K+G A +P LR + +P FMEK+ + Y S +++G
Sbjct: 1173 DEGVKSDECFRLAILHSHAVDYVKSGEPAIMPPELRRKTFPHFMEKKPEETYRSDKILGV 1232
Query: 627 LYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDY 686
LY +V I A F + + +Y + E+ + A K YD + +M
Sbjct: 1233 LYDSVSKIDFVPALELEFDDRI-LNAYTLNEEI------LEVARAIKIRYDAAMRRIMAQ 1285
Query: 687 YGIKTEAEILSGCIMEMA---KSFDKKRDLEAIIFAVKSLKKE 726
+ I TE E++S IM + K + D+ ++ +K K+
Sbjct: 1286 HDIHTEFEVISIFIMHHSMATKDYKFHEDIASVCNGLKDTFKK 1328
>gi|392864142|gb|EAS35051.2| RNA-directed RNA polymerase [Coccidioides immitis RS]
Length = 1403
Score = 414 bits (1064), Expect = e-112, Method: Compositional matrix adjust.
Identities = 255/738 (34%), Positives = 407/738 (55%), Gaps = 53/738 (7%)
Query: 8 LETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSG 67
LE + + Y+P + + + K SRR + Y+ VTPS VYF
Sbjct: 413 LEHVASEKHVYYDPKKIFDILFVKPATSRR--------IPKYCCYMRTARVTPSTVYFGT 464
Query: 68 PEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVLST 127
P + ++NRV+R Y + D FLR+ F DE + + P ++T +E ++ RV T
Sbjct: 465 PSVDITNRVIRHYIEYADRFLRVRFTDEK----FEGRIQPSHNNTMDE----VFTRVKRT 516
Query: 128 LRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAAR 187
+ NGI +GD+ +E LAF NSQ +++ + FAS P LTAA+IR MG F DIK +A++AAR
Sbjct: 517 MMNGITLGDRHYEFLAFGNSQFREHGAYFFASLPHLTAANIRAWMGHFSDIKEIARHAAR 576
Query: 188 LGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIY 247
LGQ F ++R V ++I +++ +G Y FSDG+G+IS LA++V F I
Sbjct: 577 LGQCFSTTRA---VTGCPVQIREIEDIQRNG--YTFSDGVGRISRFLAQMVMTE--FKIK 629
Query: 248 TP-----SAFQIRYGGYKGVVAVDPTSS-TKLSLRKSMLKYKSESTSLDILANSKYQPCF 301
TP S FQ R GG KG++ V P + ++ +RKS K+ + L+++ +S +
Sbjct: 630 TPCGEPPSVFQFRLGGCKGILTVSPEAQRQQVHIRKSQYKFPAIHNGLEVIRHSHFCMAS 689
Query: 302 LNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKA-HEALELMSSGENTNVLKEL 360
LNRQLI +LS+L + D VF +K R + L+ +T +A H + + + T VL E+
Sbjct: 690 LNRQLIVVLSSLEVPDEVFLEKLRMMLGNLELAMTSETQAIHLLHKYIDPNQMTLVLAEM 749
Query: 361 LMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLES------ 414
+ G++ EPF+ +L+ +RA + L+ + +I I+ G + GCLDETGTL+
Sbjct: 750 IQDGFQSSKEPFVTSLLELWRAWQIKYLKEKAKIIIEEGACLFGCLDETGTLKGLFHDNI 809
Query: 415 ---GQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS 471
+ + A F+ S N G+ ++EG ++A+NP LHPGD+RV++AV+ P+
Sbjct: 810 PSKDASYEERLACLPEIFVQISRANNDGKYEIIEGPCIIARNPSLHPGDIRVVKAVNAPA 869
Query: 472 LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFP-PMDYTPAPEKV- 529
LHH+ D +VFP G R + CSG DLDGD Y V WD +L+P F PM+Y P+ + +
Sbjct: 870 LHHLRDVIVFPQTGDRDIPSMCSGGDLDGDDYLVIWDQDLLPKDWFKQPMNYAPSVKALR 929
Query: 530 LARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFS 589
L+RD+T+ D+ +F Y+ ND L I ++H+ AD ++C+ LA+L + AVD++
Sbjct: 930 LSRDVTVNDITSFFVTYMKNDRLAQIAHSHLAWADYLEKGVNDSKCIRLAELHSAAVDYN 989
Query: 590 KTGVAATIPSGLRVEIYPDFMEKQDK---TCYESQRVIGKLYRAVKDIAPPTATIKSFTK 646
KTG+ A + L +P FMEK+ K Y SQ+++GKLY V+ + F
Sbjct: 990 KTGIPAKMTKDLAPRKWPHFMEKKHKPKDAQYISQKILGKLYDIVERVNYRPKLEAPFDD 1049
Query: 647 EVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIM---EM 703
+ ++ +EV+ +D + A + K YD + +M + IKTE E+ S ++ M
Sbjct: 1050 RI----LNSGIEVN--DDLLAVAAELKVLYDADMCRIMAQHEIKTEFEVWSTFVLSHSNM 1103
Query: 704 AKSFDKKRDLEAIIFAVK 721
+K + ++ I A++
Sbjct: 1104 SKDYKFHEEIGQISCALR 1121
>gi|119493033|ref|XP_001263772.1| RNA-directed RNA polymerase (Sad-1), putative [Neosartorya fischeri
NRRL 181]
gi|119411932|gb|EAW21875.1| RNA-directed RNA polymerase (Sad-1), putative [Neosartorya fischeri
NRRL 181]
Length = 1599
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 265/777 (34%), Positives = 424/777 (54%), Gaps = 63/777 (8%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISS 111
Y+ +TP+ +Y++ P + +SNRV+R Y + D FLR+ F DE KL + S + ++
Sbjct: 664 YMRSARITPTTIYYNTPSVDISNRVIRYYIEYADRFLRVRFTDE---KLLGRINSTVDNT 720
Query: 112 TNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRES 171
+E ++ R+ L NGIVIGD+++E LAF NSQ +++ + FA P LTAA+IR
Sbjct: 721 MDE-----VFTRIKRALANGIVIGDRRYEFLAFGNSQFREHGAYFFAPLPNLTAANIRAW 775
Query: 172 MGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKIS 231
MG F DI+NVAK+AARLGQ F ++R A+ I +I DV V++ Y FSDG+G+IS
Sbjct: 776 MGTFNDIRNVAKHAARLGQCFSTTR-AIAGCPVQIRLIDDV-VQNG---YTFSDGVGRIS 830
Query: 232 AELAEIVAKNCGFTIYT---PSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSEST 287
LA++ A + PSAFQ R GG KG++ V P + + + +RKS K+ +
Sbjct: 831 KFLAQMAASELKIKTPSDDPPSAFQFRLGGCKGMLTVSPEAQRQEVHIRKSQYKFAAVHN 890
Query: 288 SLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALE- 346
L+I+ S+Y LNRQLI +LS+LGI+D VF K R + L+ + +A L+
Sbjct: 891 GLEIIRWSQYSMATLNRQLIIVLSSLGIQDRVFHDKLRAMLQSLNEAMESDSQALCWLKK 950
Query: 347 LMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCL 406
+ + T V+ ++++ G++ EPF+ +++ ++A +L L+ + +I I+ G ++GC+
Sbjct: 951 YVDPNQMTLVVSQMVLDGFRSSREPFVTSIMRLWKAWHLKYLKEKAKIVIEKGANLLGCM 1010
Query: 407 DETGTLE--SGQVFVQCSASRRR-----EFLDNSCNNRSGELGVVEGKVVVAKNPCLHPG 459
DETG L S +V + ++ + E +G+ V+EG ++A+NP LHPG
Sbjct: 1011 DETGILRGYSERVPAKGASDEEKLAALPEIFVQIHRPDTGKCEVIEGVCILARNPSLHPG 1070
Query: 460 DMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQF-P 518
D+RV+RAV+VP L H+ D VVFP G R + CSG DLDGD Y V WD +L+P F
Sbjct: 1071 DIRVVRAVNVPQLSHLKDVVVFPQTGDRDIPSMCSGGDLDGDDYLVIWDQDLVPEDWFRK 1130
Query: 519 PMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLEL 578
M YT + L +D+T+ + +F Y+ ND L I +AH+ AD D +C+ L
Sbjct: 1131 AMKYTSDKAQDLDQDVTVNHITSFFVLYMKNDFLPRIAHAHLAWADRLEDGVNEEKCIRL 1190
Query: 579 AKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKT---CYESQRVIGKLYRAVKDIA 635
A+L + AVD++KTG A + L+ +++P FMEK+ K Y+S +++G+LY AV+ I
Sbjct: 1191 AQLHSDAVDYNKTGKPANMTRSLQPKVWPHFMEKKHKPKERIYKSNKILGQLYDAVERID 1250
Query: 636 PPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEI 695
+ F + + S + +D + A K +YD + +M + IKTE E+
Sbjct: 1251 FVPSLEMPFDERILTCSLGVN------DDLVQFARDLKADYDAAMHRIMAQHEIKTEFEV 1304
Query: 696 LSGCIM---EMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKK---NESDSSHEDVYAKAS 749
S ++ M+K + +L I +++ + + KK + E + A
Sbjct: 1305 WSTFVLSHSNMSKDYKFHEELGLISSSLRDM-------YRKKCYEKVGGRTFELLAPLAV 1357
Query: 750 AWYHVAYH--PSYWGRYKEEG-------------MNRTHFLSFPWCIHDKLIEIKRG 791
A Y V + S +Y+ E ++ F+SFPW +H+ L +I G
Sbjct: 1358 AMYRVTHEEMTSALVKYRAENPPDGKLFHKPTPRIDHLPFISFPWILHNILGKIALG 1414
>gi|145245289|ref|XP_001394912.1| RNA-directed RNA polymerase (Sad-1) [Aspergillus niger CBS 513.88]
gi|134079610|emb|CAK40827.1| unnamed protein product [Aspergillus niger]
Length = 1382
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 271/781 (34%), Positives = 412/781 (52%), Gaps = 73/781 (9%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISS 111
++ +TPS VY++ P + +SNR++R Y + D FLR+ F DE KLY I++
Sbjct: 464 HMRSATITPSTVYYNLPSVDISNRIIRRYMEHADRFLRVRFTDE---KLYGR-----INA 515
Query: 112 TNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRES 171
++ + I+ R+ L NGIVIGD+++E LAF NSQ +++ + FA P+LTAA+IR
Sbjct: 516 RSDNSNDEIFTRIKRALANGIVIGDRRYEFLAFGNSQFREHGAYFFAPLPDLTAANIRAW 575
Query: 172 MGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKIS 231
MG F DI+NVAKYAARLGQ F ++R A+ I IPDVE Y FSDG+GKIS
Sbjct: 576 MGHFSDIRNVAKYAARLGQCFSTTR-AVAGCPVQIRNIPDVERNG----YTFSDGVGKIS 630
Query: 232 AELAEIVAKNCGFTIYT---PSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSEST 287
LA++ T PSAFQ R GG KG++AV + + + +R+S K+ +
Sbjct: 631 RFLAQMAMTELKIKTPTGEPPSAFQFRLGGCKGMLAVSSDAQPQEIHIRESQNKFPTVHN 690
Query: 288 SLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL-E 346
LDI+ S++ LNRQLI ++STLG+ D VF K + + LD + +A E L +
Sbjct: 691 GLDIIRWSQFSMATLNRQLILVMSTLGVPDEVFHAKLKSMLRALDEAMESDSRAIEVLKK 750
Query: 347 LMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCL 406
+ + T + +++ G++ EPFL +L +R ++ L+ + +I I G ++G +
Sbjct: 751 YVDPNQTTLTVSQMVSDGFRRSKEPFLTSILALWRTWHIKYLKEKAKIVIDKGTNLLGVM 810
Query: 407 DETGTLES--------------------GQVFVQCSASRRREFLDNSCNNRSGELGVVEG 446
DETG L+ ++F+Q S E V+EG
Sbjct: 811 DETGILKGYFYDKIPKKDASLEQKLAALPEIFLQIPRSEASE--------DGATYEVIEG 862
Query: 447 KVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVC 506
++A+NP LHPGD+RV+RAV+VP LH + D VV P G R + CSG DLDGD Y +
Sbjct: 863 LCILARNPSLHPGDIRVVRAVNVPELHSLRDVVVLPQTGDRDIASMCSGGDLDGDDYLII 922
Query: 507 WDHELIPPLQF-PPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADL 565
WD +LI F PM YT + L D+T+++V +F Y+ NDSL I +AHV AD
Sbjct: 923 WDQDLIHKDWFLDPMRYTSNKAQDLDHDVTVDEVTSFFVMYMKNDSLPTIAHAHVAWADQ 982
Query: 566 EPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKT--CYESQRV 623
D +C+ LA+L + AVD++KTG A + L+ +P FMEK Y S+++
Sbjct: 983 LEDGVNEEKCIRLAQLHSDAVDYNKTGRPAIMTRNLQPRRWPHFMEKPKPKDLIYHSEKI 1042
Query: 624 IGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNL 683
+G+LY AV+ + + S + + +EV+ ED T A K E+D + +
Sbjct: 1043 LGQLYDAVERV----DFVPSLEMPFDERILNCSIEVN--EDLYTFAKNLKVEHDTAIRRI 1096
Query: 684 MDYYGIKTEAEILSGCIM---EMAKSFDKKRDLEAIIFAVK-SLKKEARAWFNKKNESDS 739
M + IKTE EI S I+ +M+K + ++ AI A + + +K+ +NK
Sbjct: 1097 MAQHEIKTEFEIWSTFILNHSQMSKDYKFHEEIGAISAAHRETFRKQC---YNKVE--GR 1151
Query: 740 SHEDVYAKASAWYHVAY---------HPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIKR 790
+ E + A A Y V + H ++ +N+ +SFPW + L + R
Sbjct: 1152 TFELLAPLAVAMYRVTHEEMTQALRKHREKSPQHGTPKINQLPLISFPWILPHILGRVAR 1211
Query: 791 G 791
G
Sbjct: 1212 G 1212
>gi|327353920|gb|EGE82777.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1672
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 262/775 (33%), Positives = 418/775 (53%), Gaps = 55/775 (7%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDED-LDKLYSTVLSPLIS 110
Y+ VTPS + + P + SNRV R + + D FLR+ F DE + K+Y +
Sbjct: 682 YIRSADVTPSTICYDIPSVDTSNRVFRYHREHADRFLRVRFCDEKYIGKIYPN------N 735
Query: 111 STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRE 170
S N + +Y RVL TL++GI IGD+++E LAF NSQ++++ + FAS P LTAA+IR
Sbjct: 736 SGNSQCMEKVYARVLRTLQHGITIGDRRYEFLAFGNSQLREHGAYFFASLPHLTAANIRA 795
Query: 171 SMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKI 230
MGD +I+ VAKYAARLGQ F ++R V S ++I ++E +G Y FSDG+G++
Sbjct: 796 QMGDLNNIRVVAKYAARLGQCFSTTRA---VTSCPVQIKKIDDIERNG--YVFSDGVGRL 850
Query: 231 SAELAEIVAKNCGFTIYT---PSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSES 286
S L +++ + G + PS FQ R GG KG++AV P + + + +R+S K+ +
Sbjct: 851 SHFLTQMIQSDLGIKTPSGEPPSVFQFRLGGCKGILAVSPEARQREVHIRRSQFKFPASH 910
Query: 287 TSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALE 346
L+I+ +S + LNRQLI +LS LG D VF K +A L+ +TD KA L+
Sbjct: 911 NGLEIIRHSHFSYATLNRQLILILSALGTPDEVFIAKLSMMLANLEQAMTDEDKAVSLLQ 970
Query: 347 -LMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGC 405
+ + T VL +++ G++ EPF+ +L+ +R + L+ + +I I G ++GC
Sbjct: 971 KYVDPNQMTLVLADMIRDGFQGSREPFVSSLLELWRTWQIKYLKEKAKIAIDEGAFLLGC 1030
Query: 406 LDETGTLE----SGQVFVQCSASRR----REFLDNSCNNRSGELGVVEGKVVVAKNPCLH 457
+DE+ TL+ S + + R E + G+ V+EG ++A+NP LH
Sbjct: 1031 IDESKTLKGYFRSARPKANSTYQERVDCLPEIFVQVWRHSEGKYAVIEGLCILARNPSLH 1090
Query: 458 PGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQF 517
PGD+RV++AVD P+LHH+ D VV P G R N CSG DLDGD Y V WD ++P F
Sbjct: 1091 PGDIRVVKAVDAPALHHLRDVVVLPQTGDRDLANICSGGDLDGDDYIVIWDKSMLPTDWF 1150
Query: 518 -PPMDY-TPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQC 575
PMD P PE VL RD+T++D+ +++ +Y+ N L I AH+ AD + D + +C
Sbjct: 1151 HEPMDNCAPKPE-VLDRDVTVDDITKFYVNYMQNCCLSQIARAHMALADFQEDGVKDEKC 1209
Query: 576 LELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTC---YESQRVIGKLYRAVK 632
++LA L + AVD++K+G+ + L+ +++P FME++ K Y S +++G+LY
Sbjct: 1210 IQLAALHSAAVDYNKSGIPVRMTRNLKPKVWPHFMERKMKNKNAEYRSAKILGQLYDMAS 1269
Query: 633 DIAPPTATIKSFTKEVAMQSYD-----TDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYY 687
I + I+ + E Q +D + +EVD E ++ A K +YD + +M +
Sbjct: 1270 HID-IRSKIQFLSPEERPQ-FDKRILKSGIEVD--EKLLSVATDLKMQYDTDMRRIMARH 1325
Query: 688 GIKTEAEILSGCIM---EMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESDSSHEDV 744
I+TE E+ S ++ EM+ + D+ I A+ +E + ++ + E +
Sbjct: 1326 EIETELEVWSTFVLSHSEMSNDYKFHEDIGRISSAL----REKFSTLCQEKAGGNDFEHL 1381
Query: 745 YAKASAWYHVAYHPSYWGRYKEEGM--------NRTHFLSFPWCIHDKLIEIKRG 791
A A Y V ++ + R +SFPW + L +I G
Sbjct: 1382 APLAVAMYKVTSEQMEAAMAEKSAVLIENNKMEKRLPLISFPWVLQQVLGKIANG 1436
>gi|261204627|ref|XP_002629527.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis SLH14081]
gi|239587312|gb|EEQ69955.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis SLH14081]
Length = 1633
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 263/775 (33%), Positives = 417/775 (53%), Gaps = 55/775 (7%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDED-LDKLYSTVLSPLIS 110
Y+ VTPS + + P + SNRV R + + D FLR+ F DE + K+Y +
Sbjct: 643 YIRSADVTPSTICYDIPSVDTSNRVFRYHREHADRFLRVRFCDEKYIGKIYPN------N 696
Query: 111 STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRE 170
S N + +Y RVL TL++GI IGD+++E LAF NSQ++++ + FAS P LTAA+IR
Sbjct: 697 SGNSQCMEKVYARVLRTLQHGITIGDRRYEFLAFGNSQLREHGAYFFASLPHLTAANIRA 756
Query: 171 SMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKI 230
MGD +I+ VAKYAARLGQ F ++R V S ++I ++E +G Y FSDG+G++
Sbjct: 757 QMGDLNNIRVVAKYAARLGQCFSTTRA---VTSCPVQIKKIDDIERNG--YVFSDGVGRL 811
Query: 231 SAELAEIVAKNCGFTIYT---PSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSES 286
S L +++ + G + PS FQ R GG KG++AV P + + + +R+S K+ +
Sbjct: 812 SHFLTQMIQSDLGIKTPSGEPPSVFQFRLGGCKGILAVSPEARQREVHIRRSQFKFPASH 871
Query: 287 TSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALE 346
L+I+ S + LNRQLI +LS LG D VF K +A L+ +TD KA L+
Sbjct: 872 NGLEIIRYSHFSYATLNRQLILILSALGTPDEVFIAKLSMMLANLEQAMTDEDKAVSLLQ 931
Query: 347 -LMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGC 405
+ + T VL +++ G++ EPF+ +L+ +R + L+ + +I I G ++GC
Sbjct: 932 KYVDPNQMTLVLADMIRDGFQGSREPFVSSLLELWRTWQIKYLKEKAKIAIDEGAFLLGC 991
Query: 406 LDETGTLE----SGQVFVQCSASRR----REFLDNSCNNRSGELGVVEGKVVVAKNPCLH 457
+DET TL+ S + + R E + G+ V+EG ++A+NP LH
Sbjct: 992 IDETKTLKGYFRSARPKANSTYQERVDCLPEIFVQVWRHSEGKYAVIEGLCILARNPSLH 1051
Query: 458 PGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQF 517
PGD+RV++AVD P+LHH+ D VV P G R N CSG DLDGD Y V WD ++P F
Sbjct: 1052 PGDIRVVKAVDAPALHHLRDVVVLPQTGDRDLANICSGGDLDGDDYIVIWDKSMLPTDWF 1111
Query: 518 -PPMDY-TPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQC 575
PMD P PE VL RD+T++D+ +++ +Y+ N L I AH+ AD + D + +C
Sbjct: 1112 HEPMDNCAPKPE-VLDRDVTVDDITKFYVNYMQNCCLSQIARAHMALADFQEDGVKDEKC 1170
Query: 576 LELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTC---YESQRVIGKLYRAVK 632
++LA L + AVD++K+G+ + L+ +++P FME++ K Y S +++G+LY
Sbjct: 1171 IQLAALHSAAVDYNKSGIPVRMTRNLKPKVWPHFMERKMKNKNAEYRSAKILGQLYDMAS 1230
Query: 633 DIAPPTATIKSFTKEVAMQSYD-----TDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYY 687
I + I+ + E Q +D + +EVD E ++ A K +YD + +M +
Sbjct: 1231 HID-IRSKIQFLSPEERPQ-FDKRILKSGIEVD--EKLLSVATDLKMQYDTDMRRIMARH 1286
Query: 688 GIKTEAEILSGCIM---EMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESDSSHEDV 744
I+TE E+ S ++ EM+ + D+ I A+ +E + ++ + E +
Sbjct: 1287 EIETELEVWSTFVLSHSEMSNDYKFHEDIGRISSAL----REKFSTLCQEKAGGNDFEHL 1342
Query: 745 YAKASAWYHVAYHPSYWGRYKEEGM--------NRTHFLSFPWCIHDKLIEIKRG 791
A A Y V ++ + R +SFPW + L +I G
Sbjct: 1343 APLAVAMYKVTSEQMEAAMAEKSAVLIENNKMEKRLPLISFPWVLQQVLGKIANG 1397
>gi|315047102|ref|XP_003172926.1| RNA-dependent RNA polymerase 1 [Arthroderma gypseum CBS 118893]
gi|311343312|gb|EFR02515.1| RNA-dependent RNA polymerase 1 [Arthroderma gypseum CBS 118893]
Length = 1455
Score = 410 bits (1055), Expect = e-111, Method: Compositional matrix adjust.
Identities = 254/746 (34%), Positives = 403/746 (54%), Gaps = 68/746 (9%)
Query: 8 LETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSG 67
LE + H + ++P++ + Q+ V +RR + Y+ VTPS +YF
Sbjct: 438 LEYVAHEKVVYHDPMKIFDIQFFSGVTNRR--------IPKYCCYMRSATVTPSTIYFHT 489
Query: 68 PEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVLST 127
P + SNRV+R Y + D FLR+ F DE + I+ST ++ RV T
Sbjct: 490 PTVDTSNRVIRHYIEYADRFLRVRFTDEKYEGR--------INSTYNNCMDEVFTRVKRT 541
Query: 128 LRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAAR 187
+ NG+++GD+ +E LAF NSQ +++ + FAS P LTA++IR MG F DIK VAK+AAR
Sbjct: 542 MTNGVIVGDRHYEFLAFGNSQFREHGAYFFASLPNLTASNIRAWMGHFSDIKIVAKHAAR 601
Query: 188 LGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIY 247
LGQ F S++ V + I E+E +G Y FSDG+G+IS LA+++ F +
Sbjct: 602 LGQCFSSTKA---VTGCPVTIREIDEIERNG--YTFSDGVGRISKFLAQMIMTE--FKLK 654
Query: 248 TPS-----AFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSESTSLDILANSKYQPCF 301
TPS FQ R GG KG++ V P + + + ++KS K+ + L+I+ S++ +
Sbjct: 655 TPSEEPPSVFQFRLGGCKGILTVSPEAQRREVHIKKSQYKFAAVHNGLEIIRWSQFAAAY 714
Query: 302 LNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALE-LMSSGENTNVLKEL 360
LNRQLI +LS LG+ D +F KK R + ++ +T KA L+ + + T +L ++
Sbjct: 715 LNRQLIVVLSALGVTDEIFIKKLRLMLEDMEQAMTSETKAMSLLQKQVDPNQMTLLLAQM 774
Query: 361 LMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQ 420
+ G++ +PF+ +L+ +RA + L+ + +I I G + GCLDET TL+
Sbjct: 775 VHDGFQGTSDPFVTSLLELWRAWQIKYLKEKAKICIDGGACLFGCLDETATLKGYH---- 830
Query: 421 CSASRRREFLDNSCNNRSGEL----------------GVVEGKVVVAKNPCLHPGDMRVL 464
+ R +D + R G L ++EG ++A+NP LHPGD+RV+
Sbjct: 831 ---EKTRPSIDATYEERLGYLPEIFVQVFDAEAERNYKIIEGPCILARNPSLHPGDIRVV 887
Query: 465 RAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP-PLQF--PPMD 521
RAV+VP+LHH+ D +VF G R + CSG DLDGD Y V WD +L+P P + PMD
Sbjct: 888 RAVNVPALHHLKDVIVFSQTGDRDVPSTCSGGDLDGDDYIVIWDQDLVPLPKDWFRQPMD 947
Query: 522 YTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKL 581
YT + + L RD+T+ D+ +F Y+ ND L I +AH+ AD D +C++LA+L
Sbjct: 948 YTASNAQSLTRDVTVNDITSFFVTYMKNDRLPQIAHAHLAFADFLEDGVNDKRCVQLAQL 1007
Query: 582 STIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDK---TCYESQRVIGKLYRAVKDIAPPT 638
+ AVD++K+G+ A + L +P FMEK+ K Y S++++G++Y V+ +
Sbjct: 1008 HSAAVDYNKSGIPANMTRDLVPRKWPHFMEKKYKPKEAQYHSKKILGQIYDIVERVEFRP 1067
Query: 639 ATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSG 698
F + + + D+ V E+ + A K K YD + +M + IKTE E+ S
Sbjct: 1068 KLEAPFDERI----LNCDISVS--EEMVLAAKKLKALYDADMRRIMAQHEIKTEFEVWST 1121
Query: 699 CIM---EMAKSFDKKRDLEAIIFAVK 721
++ M+K + +L I A++
Sbjct: 1122 FVLGHANMSKDYKFHEELGQISSALR 1147
>gi|159127939|gb|EDP53054.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus fumigatus
A1163]
Length = 1423
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 261/774 (33%), Positives = 418/774 (54%), Gaps = 57/774 (7%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISS 111
Y+ +TP+ +Y++ P + +SNRV+R Y + D FLR+ F DE KL + S + ++
Sbjct: 488 YMRSARITPTTIYYNTPSVDISNRVIRYYIEYADRFLRVRFTDE---KLLGRINSTIDNT 544
Query: 112 TNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRES 171
+E ++ R+ L NGIVIGD+++E LAF NSQ +++ + FA P LTAA+IR
Sbjct: 545 MDE-----VFTRIKRALANGIVIGDRRYEFLAFGNSQFREHGAYFFAPLPSLTAANIRAW 599
Query: 172 MGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKIS 231
MG F DI+NVAK+AARLGQ F ++R A+ I +I DV Y FSDG+G+IS
Sbjct: 600 MGTFNDIRNVAKHAARLGQCFSTTR-AIAGCPVQIRLIDDVVRNG----YTFSDGVGRIS 654
Query: 232 AELAEIVAKNCGFTIYT---PSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSEST 287
LA++ A + PSAFQ R GG KG++ V P + + + +RKS K+ S
Sbjct: 655 KFLAQMAASELKIRTPSGDPPSAFQFRLGGCKGMLTVSPEAQRQEVHIRKSQYKFASVHN 714
Query: 288 SLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALE- 346
L+I+ S+Y LNRQLI +LS+LGI+D VF K R + L+ + +A L+
Sbjct: 715 GLEIIRWSQYSMATLNRQLIIVLSSLGIQDSVFHDKLRAMLQSLNESMESDSQALCWLKK 774
Query: 347 LMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCL 406
+ + T V+ ++++ G++ EPF+ +++ ++A +L L+ + +I I+ G ++GC+
Sbjct: 775 YVDPNQMTLVVSQMVLDGFRSSREPFVTSIMRLWKAWHLKYLKEKAKIVIEKGANLLGCM 834
Query: 407 DETGTLESGQVFVQCSASRRREFLD-------NSCNNRSGELGVVEGKVVVAKNPCLHPG 459
DETG L ++ + E L + +G+ V+EG ++A+NP LHPG
Sbjct: 835 DETGILRGYSEWIPAKGASDEEKLAALPEIFVQIHHPDTGKCEVIEGVCILARNPSLHPG 894
Query: 460 DMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQF-P 518
D+RV+RAV+VP L H+ D VVFP G R + CSG DLDGD Y V WD +L+P F
Sbjct: 895 DIRVVRAVNVPQLSHLKDVVVFPQTGDRDIPSTCSGGDLDGDDYLVIWDQDLVPEDWFRK 954
Query: 519 PMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLEL 578
PM YT + L +D+T+ + +F Y+ ND L I +AH+ AD D +C+ L
Sbjct: 955 PMKYTSDKAQDLDQDVTVNHITSFFVLYMKNDFLPRIAHAHLAWADRLEDGVNEEKCIRL 1014
Query: 579 AKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDK---TCYESQRVIGKLYRAVKDIA 635
A+L + AVD++KTG A + L+ +++P FMEK+ K Y+S +++G+LY AV+ I
Sbjct: 1015 AQLHSDAVDYNKTGKPANMARSLQPKVWPHFMEKKHKPKEMIYKSNKILGQLYDAVERID 1074
Query: 636 PPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEI 695
+ F + + S +D + A K +YD + +M + I TE E+
Sbjct: 1075 FVPSLEMPFDERILTCSLGVS------DDLVQFARDLKADYDAAMHRIMAQHEITTEFEV 1128
Query: 696 LSGCIM---EMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWY 752
S ++ M+K + +L I +++ + ++ + S E + A A Y
Sbjct: 1129 WSTFVLSHSNMSKDYKFHEELGLISSSLRDMYRKK----CYEKVGGRSFELLAPLAVAMY 1184
Query: 753 HVAYH--PSYWGRYKEEG-------------MNRTHFLSFPWCIHDKLIEIKRG 791
V + S + + E +++ F+SFPW +++ L +I G
Sbjct: 1185 RVTHEEMTSALEKCRSENHSDGQLFHKPTPKIDQLPFISFPWILYNILGKIALG 1238
>gi|146323311|ref|XP_754927.2| RNA-directed RNA polymerase (Sad-1) [Aspergillus fumigatus Af293]
gi|129558353|gb|EAL92889.2| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus fumigatus
Af293]
Length = 1423
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 261/774 (33%), Positives = 414/774 (53%), Gaps = 57/774 (7%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISS 111
Y+ +TP+ +Y++ P + +SNRV+R Y + D FLR+ F DE KL + S + ++
Sbjct: 488 YMRSARITPTTIYYNTPSVDISNRVIRYYIEYADRFLRVRFTDE---KLLGRINSTIDNT 544
Query: 112 TNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRES 171
+E ++ R+ L NGIVIGD+++E LAF NSQ +++ + FA P LTAA+IR
Sbjct: 545 MDE-----VFTRIKRALANGIVIGDRRYEFLAFGNSQFREHGAYFFAPLPSLTAANIRAW 599
Query: 172 MGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKIS 231
MG F DI+NVAK+AARLGQ F ++R A+ I +I DV Y FSDG+G+IS
Sbjct: 600 MGTFNDIRNVAKHAARLGQCFSTTR-AIAGCPVQIRLIDDVVRNG----YTFSDGVGRIS 654
Query: 232 AELAEIVAKNCGFTIYT---PSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSEST 287
LA++ A + PSAFQ R GG KG++ V P + + + +RKS K+ S
Sbjct: 655 KFLAQMAASELKIRTPSGDPPSAFQFRLGGCKGMLTVSPEAQRQEVHIRKSQYKFASVHN 714
Query: 288 SLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALE- 346
L+I+ S+Y LNRQLI +LS+LGI+D VF K R + L+ + +A L+
Sbjct: 715 GLEIIRWSQYSMATLNRQLIIVLSSLGIQDSVFHDKLRAMLQSLNESMESDSQALCWLKK 774
Query: 347 LMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCL 406
+ + T V+ ++++ G++ EPF+ +++ ++A +L L+ + +I I+ G ++GC+
Sbjct: 775 YVDPNQMTLVVSQMVLDGFRSSREPFVTSIMRLWKAWHLKYLKEKAKIVIEKGANLLGCM 834
Query: 407 DETGTLESGQVFVQCSASRRREFLD-------NSCNNRSGELGVVEGKVVVAKNPCLHPG 459
DETG L ++ + E L + +G+ V+EG ++A+NP LHPG
Sbjct: 835 DETGILRGYSEWIPAKGASDEEKLAALPEIFVQIHHPDTGKCEVIEGVCILARNPSLHPG 894
Query: 460 DMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQF-P 518
D+RV+RAV+VP L H+ D VVFP G R + CSG DLDGD Y V WD +L+P F
Sbjct: 895 DIRVVRAVNVPQLSHLKDVVVFPQTGDRDIPSTCSGGDLDGDDYLVIWDQDLVPEDWFRK 954
Query: 519 PMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLEL 578
PM YT + L +D+T+ + +F Y+ ND L I +AH+ AD D +C+ L
Sbjct: 955 PMKYTSDKAQDLDQDVTVNHITSFFVLYMKNDFLPRIAHAHLAWADRLEDGVNEEKCIRL 1014
Query: 579 AKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDK---TCYESQRVIGKLYRAVKDIA 635
A+L + AVD++KTG A + L+ +++P FMEK+ K Y+S +++G+LY AV+ I
Sbjct: 1015 AQLHSDAVDYNKTGKPANMARSLQPKVWPHFMEKKHKPKEMIYKSNKILGQLYDAVERID 1074
Query: 636 PPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEI 695
+ F + + S +D + A K +YD + +M + I TE E+
Sbjct: 1075 FVPSLEMPFDERILTCSLGVS------DDLVQFARDLKADYDAAMHRIMAQHEITTEFEV 1128
Query: 696 LSGCIM---EMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWY 752
S ++ M+K + +L I +++ + ++ + S E + A A Y
Sbjct: 1129 WSTFVLSHSNMSKDYKFHEELGLISSSLRDMYRKK----CYEKVGGRSFELLAPLAVAMY 1184
Query: 753 HVAYHPSYWGRYKEEGMNRTH---------------FLSFPWCIHDKLIEIKRG 791
V + K N + F+SFPW +++ L +I G
Sbjct: 1185 RVTHEEMTSALEKCRSKNHSDGQLFHKPTPKIDQLPFISFPWILYNILGKIALG 1238
>gi|429860171|gb|ELA34917.1| suppressor of ascus dominance [Colletotrichum gloeosporioides Nara
gc5]
Length = 1353
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 263/761 (34%), Positives = 398/761 (52%), Gaps = 41/761 (5%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
+ KV+VTP+ VY+S P + SNRV+R + + D FLR+ F DE LY + S +
Sbjct: 522 IRKVVVTPTTVYYSSPGVESSNRVLRKFSEYQDRFLRVQFTDE----LY---YGKIYSDS 574
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESM 172
EE ++ RV TL GI IG + +E LAF NSQ+++ +++ F + IR+ M
Sbjct: 575 GEE----LFSRVYRTLAKGITIGSRHYEFLAFGNSQIRECAVYFFCPTDHRSCDCIRDWM 630
Query: 173 GDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISA 232
GDF IKNVAKYAAR+GQ F ++RE ++I +P +VE +G +CFSDG+GKIS
Sbjct: 631 GDFGHIKNVAKYAARIGQCFSTTREIPGTTVANI--VPIEDVERNG--FCFSDGVGKISQ 686
Query: 233 ELAEIVAKNCG---FTIYTPSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSESTS 288
LA IV I PSAFQ R GG KG++AV P + + + +R S K+K+
Sbjct: 687 LLAHIVVVEMSSDDACISVPSAFQFRMGGCKGMLAVWPDAKRQEVHIRPSQEKFKATFNG 746
Query: 289 LDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL-EL 347
L+I+ +++ LNRQ IT+L++LG+R K + + D + A L +
Sbjct: 747 LEIIKYAQHSIATLNRQTITVLTSLGVRAETILKLAERQIKNYQKAMNDRVAAASLLGQY 806
Query: 348 MSSGENTNVLKELLMCGY-KPDV-EPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGC 405
+ + +K+L+ G+ P++ EPF+L +L +R ++ L+ + R+ ++ ++GC
Sbjct: 807 IDENLTSLTIKDLVGWGFMDPEIQEPFVLTILDLWRIWSMKLLKEKARVIVEESAFLLGC 866
Query: 406 LDETGTLESGQVFVQCSASRRRE-----FLDNSCNNRSGELGVVEGKVVVAKNPCLHPGD 460
LDETG+L + + E FL + SG+ V G +V +NP LHPGD
Sbjct: 867 LDETGSLRGYSTATEGKKTNNIEDLPQVFLQVESPSGSGKFTCVTGLCIVGRNPSLHPGD 926
Query: 461 MRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP-LQFPP 519
+RV+ AVDVP LHH+ + VVFP G R + SG DLDGD +FV W+ +LIP PP
Sbjct: 927 LRVVEAVDVPQLHHLRNVVVFPRNGDRDVPSMMSGGDLDGDDFFVMWNQDLIPKDWHQPP 986
Query: 520 MDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELA 579
M+YT VL RD+ ++D+ +F Y+ NDSL +I AH+ HAD + +CL+LA
Sbjct: 987 MNYTQPTPAVLRRDVQVKDLRTFFVRYMQNDSLALIATAHLAHADKSLLGVKDQKCLQLA 1046
Query: 580 KLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTA 639
L + AVD+ KTG A +P L + P F+ + +T Y S +GKLY ++D+
Sbjct: 1047 ALHSKAVDYVKTGDPAKLPPALNPKERPHFLGSRGQT-YHSSTALGKLYDMIQDVGFNPL 1105
Query: 640 TIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGC 699
K F V + T ED ++ A K +YD + LM I TE EI +G
Sbjct: 1106 YEKRFDNRVLNRFNLT-------EDLLSKARAVKVQYDMAMRRLMGQRDIDTEFEIWTGF 1158
Query: 700 IMEMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVA---Y 756
+ + + E I LK R ++ +++ +A Y V
Sbjct: 1159 ALSKPRVGSDYKQQEEIGRESSLLKHRFREICYQEAGGSRVFDNIGPFVAAMYKVTQDEV 1218
Query: 757 HPSYWGRYKEEGMNRTH--FLSFPWCIHDKLIEIKRGKQRS 795
+ + G Y++E R +SFPW H + I GK ++
Sbjct: 1219 NAALAGEYEDEEHKRQSMPLISFPWIFHWIMGRIATGKVKT 1259
>gi|121704872|ref|XP_001270699.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus clavatus
NRRL 1]
gi|119398845|gb|EAW09273.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus clavatus
NRRL 1]
Length = 1428
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 259/779 (33%), Positives = 418/779 (53%), Gaps = 67/779 (8%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISS 111
Y+ +TP+ +Y++ P + +SNRV+R Y + D FLR+ F DE KL+ I+S
Sbjct: 495 YMRSARITPTTIYYNTPSVDISNRVIRHYIEFADRFLRVRFTDE---KLFGR-----INS 546
Query: 112 TNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRES 171
T ++ ++ R+ L NGIV+GD+++E LAF NSQ +++ + FA P LTAA+IR
Sbjct: 547 TMDDTMDEVFTRIKRALANGIVVGDRRYEFLAFGNSQFREHGAYFFAPLPNLTAANIRAW 606
Query: 172 MGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKIS 231
MG F DI+NVAK+AARLGQ F ++R + ++I +V +G Y FSDG+G+IS
Sbjct: 607 MGTFNDIRNVAKHAARLGQCFSTTRA---ISGCPVQIHKIDDVVRNG--YTFSDGVGRIS 661
Query: 232 AELAEIVAKNCGFTI---YTPSAFQIRYGGYKGVVAVDPTSST-KLSLRKSMLKYKSEST 287
LA++VA PSAFQ R GG KG++ V P + ++ +RKS K+ +
Sbjct: 662 RFLAQMVASELKIKTPIDEPPSAFQFRLGGCKGMLTVSPEAQRHEVHIRKSQYKFAAAHN 721
Query: 288 SLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLD-AILTDPLKAHEALE 346
L+I+ S++ LNRQLI +LS+LGI D VF +K + + L+ A+ +D + +
Sbjct: 722 GLEIIRWSQFSMATLNRQLIIVLSSLGIPDQVFHEKLQAMLRSLNEAMESDSQAIYWLKK 781
Query: 347 LMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCL 406
+ + T + ++++ G++ EPF+ +L+ +RA +L L+ + +I I G ++GC+
Sbjct: 782 YVDPNQMTLTVSQMVLDGFRRTQEPFVTSVLRLWRAWHLKYLKEKAKIAIDKGANLLGCM 841
Query: 407 DETGTLESGQVFVQCSASRRR-------EFLDNSCNNRSGELGVVEGKVVVAKNPCLHPG 459
DETG L+ V + R E + SG+ ++EG ++A+NP LHPG
Sbjct: 842 DETGILKGYFENVPAKDAPREKKLTSLPEVFVQILHPESGKYQIIEGVCILARNPSLHPG 901
Query: 460 DMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFP- 518
D+RV+RAV+VP L H+ D VVFP G R + CSG DLDGD Y V WD +LIP F
Sbjct: 902 DIRVVRAVNVPELSHLKDVVVFPQTGDRDVPSMCSGGDLDGDDYLVIWDQDLIPKDWFRI 961
Query: 519 PMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLEL 578
PM YT + L +D+T++ + +F Y+ ND L I +AH+ AD +C+ L
Sbjct: 962 PMKYTSDKAQDLNQDVTVDHITSFFVIYMKNDFLPRIAHAHLAWADRLEYGVNEGKCIRL 1021
Query: 579 AKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKT---CYESQRVIGKLYRAVK--D 633
A+L + AVD++KTG A + L+ +++P FMEK+ K Y S +++G+LY AV+ D
Sbjct: 1022 AQLHSDAVDYNKTGRPANMTRSLQPKMWPHFMEKKHKPKERIYRSGKILGQLYDAVERVD 1081
Query: 634 IAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEA 693
P + E+ + +D + A K +YD + +M + I+TE
Sbjct: 1082 FVP--------SLEMPFDERILKCRLQVSDDLMQTARDLKADYDAAMHRIMAQHEIRTEF 1133
Query: 694 EILSGCIM---EMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKK---NESDSSHEDVYAK 747
E+ S ++ M+K + +L + +++ + + KK S E +
Sbjct: 1134 EVWSTFVLSHANMSKDYKFHEELGMLSLSLRGI-------YRKKCYEKVGGRSFELLAPL 1186
Query: 748 ASAWYHVAYH--PSYWGRYKEEG-------------MNRTHFLSFPWCIHDKLIEIKRG 791
A A Y V + + +Y+ E +++ F+SFPW + + L ++ G
Sbjct: 1187 AVAMYRVTHEEMTTALQKYRAENPHDEKLFHKPTPKIDQLPFISFPWVLQNILGKVAMG 1245
>gi|340975703|gb|EGS22818.1| RNA-directed RNA polymerase-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 1626
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 255/698 (36%), Positives = 384/698 (55%), Gaps = 46/698 (6%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
V KV +TP+++YFS P + +NRVVR Y D F+R+ F DE V+ I S+
Sbjct: 572 VRKVTITPTRIYFSTPTVETTNRVVRHYGRFRDYFIRVQFTDE--------VMEGRIRSS 623
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPE----LTAADI 168
+R +Y RV LR+GI +G ++ LA+ NSQ+++ + F E +T I
Sbjct: 624 YTDREDNVYARVFRVLRHGIRMGKWHWKFLAYGNSQIRECGSFFFCEPEEAHGTITCDSI 683
Query: 169 RESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIG 228
RE MG F IK++AK AARLGQ F ++R + + II +VE +G YCF+DG+G
Sbjct: 684 REWMGRFSHIKSIAKLAARLGQCFSTTRPLPGITAP--TIIKTQDVERNG--YCFTDGVG 739
Query: 229 KISAELAEIVAKNCGFTIY-TPSAFQIRYGGYKGVVAVDPTS-STKLSLRKSMLKYKSES 286
KIS LA +A++ + +Y TPSAFQ R GG KGV+ P + T++ +R S K+ +E
Sbjct: 740 KISPLLAFFIAED--WKVYPTPSAFQFRMGGCKGVLVTWPDAKGTEVHIRPSQEKFSAEF 797
Query: 287 TSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALE 346
L+I+ S + LNRQ IT+LS LG+ +VF E +A DA + DP KA + L
Sbjct: 798 NGLEIIRCSHFSCATLNRQTITILSCLGVPSYVFLDMMEEQLANYDAAMEDPDKAIDLLT 857
Query: 347 L-MSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGC 405
+ T + E+++ G+ EPF+ +LQ +RA ++ L+ + R+ ++ G ++GC
Sbjct: 858 TYVDENMTTLTMSEMVLDGFMETREPFVRSLLQLWRAWSIKALKEKARLVVKKGAFVLGC 917
Query: 406 LDETGTLESGQVFVQCSASRRRE---------FLDNSCNNRSGELGVVEGKVVVAKNPCL 456
+DETGTL + + ++ +E FL + G V+ G +V +NP L
Sbjct: 918 VDETGTLRGHSRATEGTKNQPKEVRRDQLPQIFLQVPDHENGGTYKVITGLCLVGRNPSL 977
Query: 457 HPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP-L 515
HPGD+R++ AVDVP L H+ D VVFP +G R + CSG DLDGD YFV WD +L P
Sbjct: 978 HPGDIRMVEAVDVPQLRHLRDVVVFPLQGDRDVPSMCSGGDLDGDDYFVIWDEKLFPKEW 1037
Query: 516 QFPPMDYTPAPEKVLARD-MTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQ 574
+PPM+Y AP+ ++ M ++ E+F ++ ND L +I +AH+ AD P+ A++ +
Sbjct: 1038 SYPPMNYE-APKAPEEKEVMVANNLAEFFVLFMKNDRLPLIAHAHLATADKHPEGAKTEK 1096
Query: 575 CLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLY----RA 630
CLELA+L + AVD+ KTGVAA L YP FMEK Y S+ V+G+LY R
Sbjct: 1097 CLELAQLHSTAVDYVKTGVAAKWEKRLDPRTYPHFMEKSRARTYYSKSVLGQLYDMVERQ 1156
Query: 631 VKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIK 690
V DI K E ++ Y+ + +D + A K K++YD + +M I+
Sbjct: 1157 VFDI---QENYKLPFDERIIKRYELN------DDLLRQARKLKSQYDIAMRRIMGQLEIR 1207
Query: 691 TEAEILSGCIMEMAKSFDKKRDLEAIIFAVKSLKKEAR 728
TE E+ + +M + + E + LKK+ R
Sbjct: 1208 TEFEVWTAFVMSKPRVGTDYKVQEKVGREAACLKKQFR 1245
>gi|189202022|ref|XP_001937347.1| RNA-directed RNA polymerase Rdp1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187984446|gb|EDU49934.1| RNA-directed RNA polymerase Rdp1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 1604
Score = 407 bits (1046), Expect = e-110, Method: Compositional matrix adjust.
Identities = 231/664 (34%), Positives = 372/664 (56%), Gaps = 39/664 (5%)
Query: 56 VLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEE 115
V++TP+ ++ + P + SNR++R Y + D F+R+ F DE + + S
Sbjct: 653 VVITPTMMHVASPVMETSNRIIRKYAADSDRFIRVKFSDEKTEGQ--------LRSMPNG 704
Query: 116 RHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDF 175
+ +++RV +R+GIV+ + ++ LAF NSQ +++ + FA ++A DIR S+GDF
Sbjct: 705 KSGAVFDRVRRAMRHGIVVAGRYYDFLAFGNSQFREHGAYFFAPTSSMSANDIRLSLGDF 764
Query: 176 RDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELA 235
++K VAK+ ARLGQ F ++R S + I P E+ +G Y F+DG+GK+S +A
Sbjct: 765 TNVKTVAKFGARLGQCFSTTRAM----SQKVSIKPIPEIMRNG--YTFTDGVGKLSPFVA 818
Query: 236 EIVAKNCGFTIY---TPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYKSESTSLDI 291
++ A+ G + PS FQ R GG KGV+A+DPT + T++ +R S K++++ L+I
Sbjct: 819 KMAAEELGLSNAFDDPPSLFQFRLGGCKGVLALDPTITGTEVHIRPSQQKFQAKFMGLEI 878
Query: 292 LANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL-ELMSS 350
+ +S + F NRQ+I +LS LG+ DHV KKQ+E V + +TD A + L + +
Sbjct: 879 IRSSAFATPFFNRQIIVVLSHLGVPDHVIIKKQQEMVNDYETAMTDESVAIQKLRKHIDM 938
Query: 351 GENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETG 410
+ T + +++ G+ +PF++ +L+ +RA + L+ + RI I++G ++GC+DET
Sbjct: 939 NQTTLAMAAMVLDGFMKVQDPFMMSLLKLWRACTIKNLKEKARIAIEDGAFVLGCVDETA 998
Query: 411 TLESGQVFVQCSASRRRE---------FLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDM 461
L+ Q R+ FL N+ G ++EG ++A+NP LHPGD+
Sbjct: 999 KLKGHMNDPQSRLDATRDEKLATLPEIFLQVDDTNKKGHYKIIEGVCILARNPSLHPGDL 1058
Query: 462 RVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP-LQFPPM 520
RV+RAV++P L H+ + VV P G R N CSG DLDGD Y V WD LIP + PPM
Sbjct: 1059 RVVRAVNIPELQHLKNVVVLPQTGDRDLANMCSGGDLDGDDYMVLWDTALIPKTINAPPM 1118
Query: 521 DYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAK 580
D+TP + + + + E+F Y+ ND+LG I +AH+ AD D CL LA+
Sbjct: 1119 DFTPEKPEEIEGPIGAAHMGEFFVTYMKNDTLGQIAHAHLAQADSRDDGVNDQTCLALAE 1178
Query: 581 LSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQ---DKTCYESQRVIGKLYRAVKDIAPP 637
L + AVDF K+G+ A + LR + +P FMEK+ + Y S +++G LY V+ +
Sbjct: 1179 LHSKAVDFPKSGLPAEMNRELRPKKWPHFMEKKHMPEYKIYHSTKILGMLYDQVQLVDFK 1238
Query: 638 TATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILS 697
F K + + ++D + E +A K K+ YD+ L LM +GI+TE E S
Sbjct: 1239 PQWENPFDKRI-LNAFDLE------ETMKVEAAKIKSSYDDALRRLMAKHGIRTEFEAWS 1291
Query: 698 GCIM 701
++
Sbjct: 1292 VFVL 1295
>gi|350631624|gb|EHA19995.1| hypothetical protein ASPNIDRAFT_179412 [Aspergillus niger ATCC 1015]
Length = 1201
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 267/771 (34%), Positives = 408/771 (52%), Gaps = 73/771 (9%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISS 111
++ +TPS VY++ P + +SNR++R Y + D FLR+ F DE KLY I++
Sbjct: 455 HMRSATITPSTVYYNLPSVDISNRIIRRYMEHADRFLRVRFTDE---KLYGR-----INA 506
Query: 112 TNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRES 171
++ + I+ R+ L NGIVIGD+++E LAF NSQ +++ + FA P+LTAA+IR
Sbjct: 507 RSDNSNDEIFTRIKRALANGIVIGDRRYEFLAFGNSQFREHGAYFFAPLPDLTAANIRAW 566
Query: 172 MGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKIS 231
MG F DI+NVAKYAARLGQ F ++R A+ I IPDVE Y FSDG+GKIS
Sbjct: 567 MGHFSDIRNVAKYAARLGQCFSTTR-AVAGCPVQIRNIPDVERNG----YTFSDGVGKIS 621
Query: 232 AELAEIVAKNCGFTIYT---PSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSEST 287
LA++ T PSAFQ R GG KG++AV + + + +R+S K+ +
Sbjct: 622 RFLAQMAMTELKIKTPTGEPPSAFQFRLGGCKGMLAVSSDAQPQEIHIRESQNKFPTVHN 681
Query: 288 SLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL-E 346
L+I+ S++ LNRQLI ++STLG+ D VF K + + LD + +A E L +
Sbjct: 682 GLEIIRWSQFSMATLNRQLILVMSTLGVPDEVFHAKLKSMLRALDEAMESDSRAIEVLKK 741
Query: 347 LMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCL 406
+ + T + +++ G++ EPFL +L +R ++ L+ + +I I G ++G +
Sbjct: 742 YVDPNQTTLTVSQMVSDGFRRSKEPFLTSILALWRTWHIKYLKEKAKIVIDKGTNLLGVM 801
Query: 407 DETGTLES--------------------GQVFVQCSASRRREFLDNSCNNRSGELGVVEG 446
DETG L+ ++F+Q S E V+EG
Sbjct: 802 DETGILKGYFYDKIPKKDASLEQKLAALPEIFLQIPRSEASE--------DGATYEVIEG 853
Query: 447 KVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVC 506
++A+NP LHPGD+RV+RAV+VP LH + D VV P G R + CSG DLDGD Y +
Sbjct: 854 LCILARNPSLHPGDIRVVRAVNVPELHSLRDVVVLPQTGDRDIASMCSGGDLDGDDYLII 913
Query: 507 WDHELIPPLQF-PPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADL 565
WD +LI F PM YT + L D+T+++V +F Y+ NDSL I +AHV AD
Sbjct: 914 WDQDLIHKDWFLDPMRYTSNKAQDLDHDVTVDEVTSFFVMYMKNDSLPTIAHAHVAWADQ 973
Query: 566 EPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKT--CYESQRV 623
D +C+ LA+L + AVD++KTG A + L+ +P FMEK Y S+++
Sbjct: 974 LEDGVNEEKCIRLAQLHSDAVDYNKTGRPAIMTRNLQPRRWPHFMEKPKPKDLIYHSEKI 1033
Query: 624 IGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNL 683
+G+LY AV+ + + S + + +EV+ ED T A K E+D + +
Sbjct: 1034 LGQLYDAVERV----DFVPSLEMPFDERILNCSIEVN--EDLYTFAKNLKVEHDTAIRRI 1087
Query: 684 MDYYGIKTEAEILSGCIM---EMAKSFDKKRDLEAIIFAVK-SLKKEARAWFNKKNESDS 739
M + IKTE EI S I+ +M+K + ++ AI A + + +K+ +NK
Sbjct: 1088 MAQHEIKTEFEIWSTFILNHSQMSKDYKFHEEIGAISAAHRETFRKQC---YNKVE--GR 1142
Query: 740 SHEDVYAKASAWYHVAY---------HPSYWGRYKEEGMNRTHFLSFPWCI 781
+ E + A A Y V + H ++ +N+ +SFPW +
Sbjct: 1143 TFELLAPLAVAMYRVTHEEMTQALRKHREKSPQHGTPKINQLPLISFPWIL 1193
>gi|260801475|ref|XP_002595621.1| hypothetical protein BRAFLDRAFT_64731 [Branchiostoma floridae]
gi|229280868|gb|EEN51633.1| hypothetical protein BRAFLDRAFT_64731 [Branchiostoma floridae]
Length = 1492
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 253/631 (40%), Positives = 355/631 (56%), Gaps = 44/631 (6%)
Query: 178 IKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVE--VEDDGITYCFSDGIGKISAELA 235
++ A Y AR+GQ F ++ ++ V + I D+E + DG +YCFSDGIGKIS +LA
Sbjct: 588 VRCPATYLARMGQCFSTTESSVTVRPGQVSRIADIEGGRDPDGKSYCFSDGIGKISRDLA 647
Query: 236 EIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYKSESTSLDILAN 294
+ V + + + PSAFQ+RY G KG++AVDPT + + RKSM K+ SE +++I +
Sbjct: 648 KEVCEKTQRS-HEPSAFQVRYAGVKGMLAVDPTLTGLAMQYRKSMEKFSSEHNNIEICSE 706
Query: 295 SKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENT 354
S +LNRQ+I++LS LGI D VF+ Q + + +L ++ +A +AL +
Sbjct: 707 SHPARFYLNRQIISILSGLGIPDEVFQVLQEDQLRKLASMFLLENRAVDALNQRAQLSGV 766
Query: 355 NVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFI--QNGRAMMGCLDETGTL 412
K L CG EPF ML+ S + + R + RI I + GR M+G LDETGTL
Sbjct: 767 PYQK-LSNCGVYMTREPFFKGMLRRVYKSGIGDTRRKARIEIPPEYGRNMLGVLDETGTL 825
Query: 413 ESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSL 472
E GQVFVQ + ++ GE V+ G VVV++NPC HPGD+R LRAVDVP+L
Sbjct: 826 EYGQVFVQYT---------EDITDKGGETKVLTGDVVVSRNPCFHPGDVRKLRAVDVPAL 876
Query: 473 HHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFP---PMDYTPAPEKV 529
HHMVD +VFP+KG RPH NE SG DLDGD +FV W +L+ Q P PM + AP+K+
Sbjct: 877 HHMVDVIVFPSKGPRPHPNEMSGGDLDGDQFFVTWHPDLL--FQRPNADPMHFK-APKKI 933
Query: 530 LARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFS 589
+TI D++ + DYI +D LGVI NAH+ +D E D S CL LA+ + AVDF
Sbjct: 934 ELEIVTISDLQNFIVDYIKSDILGVIANAHLAFSDKEEDGVFSQVCLNLAEKHSDAVDFP 993
Query: 590 KTGVAATIPSGLRVEIYPDFMEK-QDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEV 648
KTGV + R + YPDFM+K KT S++ +G++YR + I + T E
Sbjct: 994 KTGVPVGLSDDERPKAYPDFMDKSHKKTVRRSEKAMGEMYRECQAIE-NICSAPEKTDEA 1052
Query: 649 AMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFD 708
D + + + Y A + + Y+++L LMD YGI+TEAE +SGCI + K D
Sbjct: 1053 ETIEPDPYLILPTHQRYKRQAEQSRGRYNDQLKYLMDRYGIETEAEAMSGCIGRIHKHMD 1112
Query: 709 KKRDLEAI--IFA--VKSLKKEARAWF-----NKKNESDSSH-EDVYAKASAWYHVAYHP 758
+ D + +F +K L++ R F +KN S + +V AKASAWY V Y
Sbjct: 1113 NRYDRHEVERVFKERIKDLRRRTREEFFVEFGGEKNVKKSDYPPEVQAKASAWYVVTYSD 1172
Query: 759 SYWGRYKEEGMNRTHFLSFPWCIHDKLIEIK 789
+ N LSFPW + D L IK
Sbjct: 1173 A----------NENRLLSFPWIVGDILAVIK 1193
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 124/208 (59%), Gaps = 9/208 (4%)
Query: 50 LIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLI 109
L V +V+VTP+++ F PEI NRV+R + D+FLR+ F DED KL +T
Sbjct: 389 LQVVARVIVTPTRLVFLQPEIMYGNRVLREF--GTDHFLRVVFRDEDFSKLQATG----T 442
Query: 110 SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIR 169
N + I+ RV L+ GI +G++ +E LA SNSQ++++ +W FAS A IR
Sbjct: 443 GRGNGDEEEKIFVRVRKVLKKGIKVGNRLYEFLAASNSQLREHGLWFFASDGRNRADSIR 502
Query: 170 ESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVE--VEDDGITYCFSDGI 227
+ MGDF + + A Y AR+GQ F ++ ++ V + I D+E + DG +YCFSDGI
Sbjct: 503 DWMGDFSNSRCPATYLARMGQCFSTTESSVTVRPGQVSRIADIEGGRDPDGKSYCFSDGI 562
Query: 228 GKISAELAEIVAKNCGFTIYTPSAFQIR 255
GKIS +LA+ V + + + PSAFQ+R
Sbjct: 563 GKISRDLAKEVCEKTQRS-HEPSAFQVR 589
>gi|169595008|ref|XP_001790928.1| hypothetical protein SNOG_00237 [Phaeosphaeria nodorum SN15]
gi|111070612|gb|EAT91732.1| hypothetical protein SNOG_00237 [Phaeosphaeria nodorum SN15]
Length = 1523
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 240/667 (35%), Positives = 372/667 (55%), Gaps = 62/667 (9%)
Query: 56 VLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEE 115
++TPS ++ + P + SNR+ R Y D FLR+ F DE + + ++ + +T
Sbjct: 608 AIITPSTIHVASPIMETSNRITREYAAIADRFLRVKFSDEKTEGVLRSIPNGKADAT--- 664
Query: 116 RHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDF 175
++RV ++NGIV+ + +E LAF NSQ +++ + +A +A DIR S+G F
Sbjct: 665 -----FDRVRRAMKNGIVVAGRYYEFLAFGNSQFREHGAYFYAPTSTKSADDIRSSLGRF 719
Query: 176 RDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELA 235
IK VAK+ ARLGQ F ++R A+ V + ++I PD+E YCF+DG+GK+S LA
Sbjct: 720 DHIKTVAKFGARLGQCFSTTR-AMRVKVTIVKI-PDIERNG----YCFTDGVGKLSLFLA 773
Query: 236 EIVAKNCGFTIY---TPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYKSESTSLDI 291
++ A+ G + PS +Q R GG KGV+A+DP + ++ +R S LK++++ L+I
Sbjct: 774 QMAAQELGLSNAFDDPPSLYQFRLGGCKGVLALDPKITGNEVHIRPSQLKFEAKFLGLEI 833
Query: 292 LANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL-ELMSS 350
+ +S F NRQ+I +LS LG+ D+V +KQ+E V + +TD A L + +
Sbjct: 834 IRSSALATPFFNRQIIVVLSDLGVPDNVLIQKQQEMVNDYEQAMTDKDTAIAKLRKHIDM 893
Query: 351 GENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETG 410
+ T + +++ G+ EPF++ +L+ +RA+ + L+ + RI I++G ++GC+DE+G
Sbjct: 894 NQTTLTMAGMVIDGFMESREPFMMSLLRLWRAATIKNLKEKARIAIEDGAFVLGCVDESG 953
Query: 411 TLESGQVFVQCSASRRRE---------FL--DNSCNNRSGELGVVEGKVVVAKNPCLHPG 459
TL+ Q + R+ FL D++ N+ G +V+G V+A+NP LHPG
Sbjct: 954 TLKGHLNDPQSRSDASRQDKMQTLPEIFLQVDDTEANKRGHYKIVKGVCVLARNPSLHPG 1013
Query: 460 DMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPP 519
D+RV+RAVDVP+LHH+ + VV P G R N CSG DLDGD Y V WD +LIP L
Sbjct: 1014 DLRVVRAVDVPALHHLKNVVVLPQTGDRDLANMCSGGDLDGDDYMVLWDKDLIPEL---- 1069
Query: 520 MDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELA 579
+T+ D+ ++F Y+ NDSLG I AH+ AD+ + S CLELA
Sbjct: 1070 --------------ITLSDISDFFVTYMQNDSLGQIAYAHLAQADVNHEGVGSGTCLELA 1115
Query: 580 KLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEK---QDKTCYESQRVIGKLYRAVK--DI 634
KL + AVD+ K+G+ A + LR + +P FMEK Q Y S RV+GKLY V+ D
Sbjct: 1116 KLHSQAVDYPKSGIPAQMSQDLRPKRWPHFMEKKHLQAHKIYRSTRVLGKLYDQVELVDF 1175
Query: 635 APPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAE 694
P F + +Y+ D E+ ++ A K YD LM +GI+TE E
Sbjct: 1176 KPQWENAFDFR---ILDAYEVD------EELLSKATDIKALYDEAFKRLMAKHGIRTEFE 1226
Query: 695 ILSGCIM 701
S ++
Sbjct: 1227 AWSVFVL 1233
>gi|391341002|ref|XP_003744822.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like
[Metaseiulus occidentalis]
Length = 1356
Score = 404 bits (1037), Expect = e-109, Method: Compositional matrix adjust.
Identities = 277/793 (34%), Positives = 415/793 (52%), Gaps = 59/793 (7%)
Query: 28 QYRKYVLSRRFLTSPAVALDD------GLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYP 81
Q+RK+ + R +A D G+ + KV +TPS+ PE NR++R
Sbjct: 372 QFRKFRVQEREKKRKGIADCDSERSLQGMAIIYKVFLTPSRTILRPPEEHGENRILRQVS 431
Query: 82 DEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFET 141
D LR++F D++L+KL + T EE + + LR+GI I ++ +E
Sbjct: 432 R--DYMLRVAFRDDNLEKLTHNL-------TREEGRNFLEYFLKGFLRDGIEIENRTYEY 482
Query: 142 LAFSNSQVKDNSMWMFASRPE-LTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALH 200
LA S+SQ++D+ W +A + IRE MG F DIKNV K AR G F S+ E +
Sbjct: 483 LAASSSQLRDHGCWYYAKDEHGRDSKSIREEMGSFDDIKNVGKKMAREGLCFSSTIETVK 542
Query: 201 VDSSDIEIIPDVEV---EDDGITYCFSDGIGKISAELAEIVAKNCGFTIY--TPSAFQIR 255
V + I D+ E Y FSDGIGKISAEL + V + ++ PSAFQIR
Sbjct: 543 VSEDECTIEEDITGGAHEKSNKPYTFSDGIGKISAELRDDVCEALKDSLRDKKPSAFQIR 602
Query: 256 YGGYKGVVAVDPT-SSTKLSLRKSMLKYKS-ESTSLDILANSKYQPCFLNRQLITLLSTL 313
+ G KG+VA DP +L LRKSM+K+ S S+S +++ S+ + LN+Q+IT+L L
Sbjct: 603 FRGAKGMVAFDPCLEGRRLVLRKSMVKFASTSSSSFEVIKYSEDRSLTLNKQIITILEQL 662
Query: 314 GIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVL--KELLMCGYKPDVEP 371
G+ +F + Q + L +AHE L + V+ + G +P
Sbjct: 663 GVPAEIFLRYQEANIIDFADALLFENQAHERLTASIKKDPDCVIDFSKFREFGMSVVRDP 722
Query: 372 FLLMMLQTFRASNLLELRTRTRIFIQNG--RAMMGCLDETGTLESGQVFVQCSASRRREF 429
+ ML + LR + RI I G R ++G +DETG LE GQV+V+ +
Sbjct: 723 YFRAMLIELYRYIITNLRDKARISIPWGLGRNLLGVIDETGKLEYGQVYVRYTPREDTSG 782
Query: 430 LDNSCNNRSGELGV--------VEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVF 481
D +N + E GV V+G+V+V K PC+HPGD+R+L AVD+P L H+VD +VF
Sbjct: 783 PDIKVDNNTDEDGVPRQAGTEVVKGRVLVTKCPCVHPGDVRMLEAVDIPELAHLVDVIVF 842
Query: 482 PAKGKRPHTNECSGSDLDGDVYFVCWDHE-LIPPLQFPPMDYTPAPEKVLARDMTIEDVE 540
P KG RPH NE +GSDLDGD Y V WD PM + AP + + + +ED
Sbjct: 843 PQKGPRPHPNEMAGSDLDGDEYAVIWDQNFFFADGNHRPMIFDDAPAEP-SESLELEDYY 901
Query: 541 EYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSG 600
+ +I+ND+ G I NAH+ HAD E D S++CL LA+ ++ +DF+KTG +
Sbjct: 902 NFICQFILNDNKGTISNAHLAHADREEDGIFSDKCLRLAEKVSMTLDFAKTGRLTQLEPS 961
Query: 601 LRVEIYPDFMEKQD-KTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEV 659
V++YPDFM+KQD K Y S++V+GKLYRA + + T+K + + + + E+
Sbjct: 962 EVVKVYPDFMQKQDHKATYRSEKVLGKLYRASRALE---ITVKQGSSGCEERYVNENFEL 1018
Query: 660 DGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKK-RDLEAIIF 718
+G+E+ DA + +Y++RL N+M GI++EAEI+ + +++K K DLE +
Sbjct: 1019 EGWEEKKQDALIFVEKYEHRLTNIMGRMGIQSEAEIMVSIVTQVSKYMSKSFHDLEEL-- 1076
Query: 719 AVKSLKKEARAWFNKKNESD------SSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRT 772
+ L+++ R + N K + D + ASA Y + Y P G T
Sbjct: 1077 -QEQLERQ-RFFLNLKMKEDFERMTRGDKDQKMLLASAIYMLVYDPP-------GGEKLT 1127
Query: 773 HFLSFPWCIHDKL 785
F PW + D+L
Sbjct: 1128 PFYGAPWIVFDQL 1140
>gi|322701339|gb|EFY93089.1| suppressor of ascus dominance [Metarhizium acridum CQMa 102]
Length = 1296
Score = 404 bits (1037), Expect = e-109, Method: Compositional matrix adjust.
Identities = 270/823 (32%), Positives = 431/823 (52%), Gaps = 77/823 (9%)
Query: 6 HALETLFHLRECCYEPVRWLE-EQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVY 64
H LE L E ++P++ E +V PA + YV K +TP+ +
Sbjct: 376 HRLEYLVDQNEILFDPMKLFSMEDATAFV--------PAARIPHYCTYVRKASITPTTIR 427
Query: 65 FSGPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLDKLYSTVLSPLISSTNEERHTTIYER 123
F+ P + SNRVVR Y D FLR+ FV+E +L +L T + + +++R
Sbjct: 428 FNSPTVETSNRVVRKYSHVQDRFLRVQFVEESELVRLGKTKYN----------NVKVWKR 477
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
V L GI IGD+++E LAF +SQ++ +S + F L+ DIR MG F IK VAK
Sbjct: 478 VERALSQGIRIGDRQYEFLAFGSSQLRQSSAYFFCPTDHLSCEDIRAWMGQFDHIKCVAK 537
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCG 243
YAARLGQ F ++R+ + DI+ I D++ CF+DG+G IS L++++ +
Sbjct: 538 YAARLGQCFSTTRDIKGIWVPDIKYIDDIQRNGQ----CFTDGVGLISKFLSQLIMEEMT 593
Query: 244 FTIY-TPSAFQIRYGGYKGVVAVDPTS-STKLSLRKSMLKYKSESTSLDILANSKYQPCF 301
I+ P+AFQ R GG KGV+AV P + ++ +RKS K+KS +L+I+ +
Sbjct: 594 LDIFDKPTAFQFRMGGCKGVLAVWPQAQGMEVHIRKSQEKFKSNFQALEIVRCAARSTAT 653
Query: 302 LNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL-ELMSSGENTNVLKEL 360
LNRQ IT+L +LG+R +F + +E ++ + D +A + L + + +++ VL EL
Sbjct: 654 LNRQTITILESLGVRKKIFMELLKEQISWYENATKDTSEAIKLLTKFVDENQSSLVLAEL 713
Query: 361 LMCGYKPD--VEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVF 418
L G+K D E F L + + + + L+ +TRI + ++GC+DE+G+L
Sbjct: 714 LKAGFKTDNIQESFTLNIFNLWLSWSFRLLKEKTRIHVPKSAFVLGCVDESGSLRGHSTE 773
Query: 419 VQCSASRRRE------FLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSL 472
+ S+ + E FL + + G+ ++GK +V +NP LHPGD+RV++AV+ P L
Sbjct: 774 TEGSSDQLNEKQLPQIFLQLTDPSHEGKTNTIQGKCIVGRNPSLHPGDIRVVQAVNNPKL 833
Query: 473 HHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP-PLQFPPMDYTPAPEKVLA 531
H+ D +VFP+KG RP SG DLDGD +F+ WD LIP PMDY + L
Sbjct: 834 RHLKDVIVFPSKGDRPVPAMLSGGDLDGDDFFIIWDDRLIPEEWNHKPMDYEAPSPRQLD 893
Query: 532 RDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKT 591
RD+T++D+ E+F +Y+ ND+LG+I AH+ AD+ K S CL LA+L + AVD++KT
Sbjct: 894 RDVTVDDLREFFVNYMKNDNLGLIAVAHLAFADMYGPK--SQICLRLAELHSQAVDYAKT 951
Query: 592 GVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIK-----SFTK 646
G A ++ E +P FMEK K+ Y S++ +G LY ++A T + SF +
Sbjct: 952 GEPAEFGYKMQPERWPHFMEK--KSTYRSKKALGALY---DEVAKHTFQFRPEWGHSFDE 1006
Query: 647 EVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIM---EM 703
+ ++ Y+ D +T A + K +YD+ + LM Y ++TE E+ +G +M +
Sbjct: 1007 RI-LERYEFDKST------LTAAREIKAQYDSAIRRLMVQYHVETEYELYTGWVMSNTSI 1059
Query: 704 AKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGR 763
+ ++ ++ DL VK +E N S++ D + +A Y V R
Sbjct: 1060 SSNYKRQEDLGLEFDVVKQRFREQCC--NVAGGSEAPQLDKF--VAAMYKVTEEQVNKAR 1115
Query: 764 YKEEGMNRTH---------------FLSFPWCIHDKLIEIKRG 791
+ + +H +SFPW H +I + G
Sbjct: 1116 NRGDDEPVSHQNEADPSEELKPNVPLISFPWIFHWVMIRLAMG 1158
>gi|389646751|ref|XP_003721007.1| RNA-dependent RNA polymerase 1 [Magnaporthe oryzae 70-15]
gi|351638399|gb|EHA46264.1| RNA-dependent RNA polymerase 1 [Magnaporthe oryzae 70-15]
Length = 1407
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 241/662 (36%), Positives = 368/662 (55%), Gaps = 31/662 (4%)
Query: 55 KVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLDKLYSTVLSPLISSTN 113
KV VTPS +Y S P + +NRV+R Y + D FLR+ F DE +L++ P +
Sbjct: 458 KVTVTPSTMYLSSPMVETTNRVLRHYNEHKDRFLRVQFTDELPTGRLHA----PNDLGAD 513
Query: 114 EERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMG 173
+E I+ RV L+NGI IGD+ ++ LAF +SQ+++NS + F ++T IR MG
Sbjct: 514 DE----IFSRVYRVLKNGIHIGDRHYKFLAFGSSQMRENSTYFFCDAGDVTCDSIRAWMG 569
Query: 174 DFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAE 233
F I+NV KYAARLGQ F ++R V I+ IPD+E YCF+DG+GKIS+
Sbjct: 570 RFSHIRNVGKYAARLGQCFSTTRSIDRVAMPWIKTIPDIEKNG----YCFTDGVGKISSL 625
Query: 234 LAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAV-DPTSSTKLSLRKSMLKYKSESTSLDIL 292
A ++++N Y PSAFQ R GG KGV+ V + ++ +R S LK++++ + L+++
Sbjct: 626 WAVVISENLKLD-YIPSAFQFRMGGCKGVLVVWEDVKGQEIHIRPSQLKFETDHSRLEVI 684
Query: 293 ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL-ELMSSG 351
S + LNRQ I++L++LG+++ VFE E +A+ + + D A L + +
Sbjct: 685 RCSHFSVASLNRQTISVLTSLGVKNEVFESMLAEQLAKYNRAMEDATAAMTLLTQYVDEN 744
Query: 352 ENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGT 411
+ TN L L+ G+ EPF+ ML+ +R ++ L+ + R+ ++ G ++GC+DET T
Sbjct: 745 QMTNTLARLVKAGFMESHEPFVCTMLRLWRTWSVKTLKEKARLVVEKGAFVLGCVDETKT 804
Query: 412 LESGQVFVQCSASRRREFLDNS---------CNNRSGELGVVEGKVVVAKNPCLHPGDMR 462
L + S ++R N + S + V+ G +V +NP LHPGD+R
Sbjct: 805 LHGHFTHIPASPNQRPRLNGNMKLPEIFLQVPDGPSRDYKVITGLCLVGRNPSLHPGDIR 864
Query: 463 VLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP-PLQ--FPP 519
V++A+DVP L H+ D VVF G R CSG DLDGD +FV WD L+P P Q + P
Sbjct: 865 VVQAIDVPQLRHIRDVVVFAQTGDRDIPGMCSGGDLDGDDFFVLWDERLLPLPSQRNYKP 924
Query: 520 MDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELA 579
Y P P + L R++T +D+ ++F Y+ N SL I +AH+ AD A+ +CLELA
Sbjct: 925 ASYHPPPARELDREVTADDLCQFFVTYMKNFSLPRIAHAHLAQADKY--GAKDEKCLELA 982
Query: 580 KLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTA 639
L ++AVD+ KTGV A I L +P FMEK + Y S++++GKLY VK + A
Sbjct: 983 YLHSLAVDYPKTGVPAAIRPRLMPNEFPHFMEKA-RGRYHSRKILGKLYDQVKPVNFHPA 1041
Query: 640 TIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGC 699
F ++ + D + +A K KT YD + +M + I TE E+ S
Sbjct: 1042 YEMPFDVKILSLYGELSQHGDLGPKLLREARKLKTLYDQSIMRIMGQHEIATEFEVFSAF 1101
Query: 700 IM 701
++
Sbjct: 1102 VL 1103
>gi|296804254|ref|XP_002842979.1| RNA-directed RNA polymerase Rdp1 [Arthroderma otae CBS 113480]
gi|238845581|gb|EEQ35243.1| RNA-directed RNA polymerase Rdp1 [Arthroderma otae CBS 113480]
Length = 1473
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 239/666 (35%), Positives = 370/666 (55%), Gaps = 39/666 (5%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISS 111
Y+ VTPS +YF P + SNRV+R Y + D FLR+ F DE + I+S
Sbjct: 483 YMRSATVTPSTIYFHTPTVDTSNRVLRYYIEHADRFLRVRFADEKYEGR--------INS 534
Query: 112 TNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRES 171
+ ++ RV T+ NGI +GD+ +E LAF NSQ +++ + FAS P LTAA+IR
Sbjct: 535 SYNNCMDELFTRVKRTMTNGITVGDRHYEFLAFGNSQFREHGAYFFASLPTLTAANIRAW 594
Query: 172 MGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKIS 231
MG F DIK VAK+AARLGQ F +++ V + + E+E +G Y FSDG+G+IS
Sbjct: 595 MGHFSDIKIVAKHAARLGQCFSATKA---VTGCPVIVQEIDEIERNG--YIFSDGVGRIS 649
Query: 232 AELAEIVAKNCGFTIYT---PSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSEST 287
LA+++ + PS FQ R GG KG++ V P + + + +RKS K+ +
Sbjct: 650 NFLAQMIRTELNIQTPSDEPPSVFQFRLGGCKGILTVSPEAQHREVHIRKSQYKFAAVHN 709
Query: 288 SLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALE- 346
L+++ +SK+ LNRQLI +LS LG+ D +F KK + + +T+ KA L+
Sbjct: 710 GLEVIRHSKFAGAHLNRQLIMVLSALGVTDEIFLKKLHLVLEDMQDAMTNESKAITLLQK 769
Query: 347 LMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCL 406
+ + T +L ++ G++ EPF+ +L+ +RA ++ L+ + +I I+ G ++GC+
Sbjct: 770 RVDPNQMTFLLAHMVNDGFQASCEPFVKSLLELWRAWDIKYLKEKAKIHIEKGACLLGCI 829
Query: 407 DETGTLESG-QVFVQCSASRRREFLDNSC--------NNRSGELGVVEGKVVVAKNPCLH 457
DET TL+ + S + E LDN + ++EG ++A+NP LH
Sbjct: 830 DETATLKGYYEKERPASDATIEERLDNLPEIFVQVFDTEEETKYKIIEGPCILARNPSLH 889
Query: 458 PGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP-PLQ 516
PGD+RV+RAV+VP+LHH+ D +VFP G R ++ CSG DLDGD Y V WD +LIP P
Sbjct: 890 PGDIRVVRAVNVPALHHLKDVIVFPQTGDRDVSSTCSGGDLDGDDYIVIWDPDLIPLPKD 949
Query: 517 F--PPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQ 574
+ PMDYT + + L RD+T+ D+ +F Y+ ND L I ++H+ AD D +
Sbjct: 950 WFCEPMDYTASNAQSLTRDVTVNDITSFFVTYMKNDHLPQIAHSHLAFADYVEDGVNDER 1009
Query: 575 CLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDK---TCYESQRVIGKLYRAV 631
C++LA+L + AVD++KTG+ A + L +P FMEK K Y S++++G++Y V
Sbjct: 1010 CMQLAQLHSAAVDYNKTGIPANMSRDLIPRKWPHFMEKNHKPKEAQYYSRKILGQIYDIV 1069
Query: 632 KDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKT 691
+ + F K + + + +D I A K K YD + +M + +KT
Sbjct: 1070 ERVEFRPKLEAPFDKRI------LNSHIPVSDDLIQIAKKMKVLYDADMRRIMAQHEVKT 1123
Query: 692 EAEILS 697
E E+ S
Sbjct: 1124 EFEVWS 1129
>gi|449301850|gb|EMC97859.1| hypothetical protein BAUCODRAFT_67567, partial [Baudoinia
compniacensis UAMH 10762]
Length = 1035
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 243/690 (35%), Positives = 390/690 (56%), Gaps = 39/690 (5%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
+ ++TP+ + S P + +NR++R Y +D+FLR+ F DE + V++ S
Sbjct: 286 IRAAVITPTSLIISTPVVETTNRIIRKYEHIVDHFLRVKFTDE---RYKGKVMNN--SDN 340
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESM 172
N++ I+ RV TL+NGI I + ++ LAF NSQ ++N + FAS P+L+AADIR +M
Sbjct: 341 NQDE---IFTRVKRTLQNGIQIAGRHYDFLAFGNSQFRENGAYFFASTPDLSAADIRVAM 397
Query: 173 GDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISA 232
G F I VAKYA+RLGQ F ++R S + + ++ +G Y F+DG+GK+S
Sbjct: 398 GTFTHITTVAKYASRLGQCFSTTRGL----SYRVRVDALADITRNG--YTFTDGVGKVSP 451
Query: 233 ELAEIVAKNCGFT---IYTPSAFQIRYGGYKGVVAVDPTSSTK----LSLRKSMLKYKSE 285
+A++VA+ GF + PS Q R GGYKGV+AVDPT + K + R S +K+ +
Sbjct: 452 FIAQMVAQTFGFPNAFVDYPSVIQFRLGGYKGVLAVDPTLTGKDNMVIQTRPSQMKFPAV 511
Query: 286 STSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL 345
L+I S++ +LN+Q+I +LS G+ D VF K ++ + L + D KA + L
Sbjct: 512 YHGLEICRLSQFTAAYLNQQIILVLSARGVEDKVFVVKVQQALKDLQDAMIDEDKAKDQL 571
Query: 346 -ELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMG 404
+ + T VL +++ G+ +PF++ ++ +R+ + L+ + RIF+ G ++G
Sbjct: 572 CKKIDYNHTTLVLAQMIDDGFMAVRDPFMMSCMRLWRSWMVKYLKEKARIFVDEGAFVLG 631
Query: 405 CLDETGTL------ESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHP 458
C DET TL ++ V + + FL + G V+G ++A+NP LHP
Sbjct: 632 CTDETTTLRGDFNADNHTVDLTDATPLPEIFLQIPDVAKKGSYVAVKGVCLLARNPSLHP 691
Query: 459 GDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQF- 517
GD+RV+RA+DVP+LHH+ +CVV P G R N CSG DLDGD + V WD +LIPP +
Sbjct: 692 GDIRVVRAIDVPALHHLKNCVVLPQTGDRDLANMCSGGDLDGDDFLVIWDKQLIPPEWYH 751
Query: 518 PPMDYTPAPEKVLAR-DMTIEDVEEYFADYIVNDSLGVICNAHVVHADLE-PDKARSNQC 575
PMDY APE V A +T++ + +F Y+ ++++G+I AH AD + + +C
Sbjct: 752 SPMDYQ-APEPVKAELPITVDAITSFFVTYMKHNNVGIIACAHRYTADDGFSEGVKDFKC 810
Query: 576 LELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIA 635
L+LA+L ++AVD+ KTGV A +P+ LRV YP + E+ K+ Y S+RV+G+LY AV+ I
Sbjct: 811 LQLAQLHSMAVDYMKTGVPAVMPNELRVRKYPHWAERPGKSSYHSRRVLGQLYDAVQRID 870
Query: 636 PPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEI 695
A F + + + +Y D + + A + K YD + +M YG++ E EI
Sbjct: 871 LQPAWDLPFDERI-LSAYQLDAVL------LQAASEVKVRYDEAVQRIMAQYGVENEFEI 923
Query: 696 LSGCIMEMAKSFDKKRDLEAIIFAVKSLKK 725
+ + + + + E + V +LK+
Sbjct: 924 WTTFVRSHNQDENDYKFTEKLGETVTTLKQ 953
>gi|86196450|gb|EAQ71088.1| hypothetical protein MGCH7_ch7g495 [Magnaporthe oryzae 70-15]
Length = 1952
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 241/662 (36%), Positives = 368/662 (55%), Gaps = 31/662 (4%)
Query: 55 KVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLDKLYSTVLSPLISSTN 113
KV VTPS +Y S P + +NRV+R Y + D FLR+ F DE +L++ P +
Sbjct: 1003 KVTVTPSTMYLSSPMVETTNRVLRHYNEHKDRFLRVQFTDELPTGRLHA----PNDLGAD 1058
Query: 114 EERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMG 173
+E I+ RV L+NGI IGD+ ++ LAF +SQ+++NS + F ++T IR MG
Sbjct: 1059 DE----IFSRVYRVLKNGIHIGDRHYKFLAFGSSQMRENSTYFFCDAGDVTCDSIRAWMG 1114
Query: 174 DFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAE 233
F I+NV KYAARLGQ F ++R V I+ IPD+E YCF+DG+GKIS+
Sbjct: 1115 RFSHIRNVGKYAARLGQCFSTTRSIDRVAMPWIKTIPDIEKNG----YCFTDGVGKISSL 1170
Query: 234 LAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAV-DPTSSTKLSLRKSMLKYKSESTSLDIL 292
A ++++N Y PSAFQ R GG KGV+ V + ++ +R S LK++++ + L+++
Sbjct: 1171 WAVVISENLKLD-YIPSAFQFRMGGCKGVLVVWEDVKGQEIHIRPSQLKFETDHSRLEVI 1229
Query: 293 ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL-ELMSSG 351
S + LNRQ I++L++LG+++ VFE E +A+ + + D A L + +
Sbjct: 1230 RCSHFSVASLNRQTISVLTSLGVKNEVFESMLAEQLAKYNRAMEDATAAMTLLTQYVDEN 1289
Query: 352 ENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGT 411
+ TN L L+ G+ EPF+ ML+ +R ++ L+ + R+ ++ G ++GC+DET T
Sbjct: 1290 QMTNTLARLVKAGFMESHEPFVCTMLRLWRTWSVKTLKEKARLVVEKGAFVLGCVDETKT 1349
Query: 412 LESGQVFVQCSASRRREFLDNS---------CNNRSGELGVVEGKVVVAKNPCLHPGDMR 462
L + S ++R N + S + V+ G +V +NP LHPGD+R
Sbjct: 1350 LHGHFTHIPASPNQRPRLNGNMKLPEIFLQVPDGPSRDYKVITGLCLVGRNPSLHPGDIR 1409
Query: 463 VLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP-PLQ--FPP 519
V++A+DVP L H+ D VVF G R CSG DLDGD +FV WD L+P P Q + P
Sbjct: 1410 VVQAIDVPQLRHIRDVVVFAQTGDRDIPGMCSGGDLDGDDFFVLWDERLLPLPSQRNYKP 1469
Query: 520 MDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELA 579
Y P P + L R++T +D+ ++F Y+ N SL I +AH+ AD A+ +CLELA
Sbjct: 1470 ASYHPPPARELDREVTADDLCQFFVTYMKNFSLPRIAHAHLAQADKY--GAKDEKCLELA 1527
Query: 580 KLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTA 639
L ++AVD+ KTGV A I L +P FMEK + Y S++++GKLY VK + A
Sbjct: 1528 YLHSLAVDYPKTGVPAAIRPRLMPNEFPHFMEKA-RGRYHSRKILGKLYDQVKPVNFHPA 1586
Query: 640 TIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGC 699
F ++ + D + +A K KT YD + +M + I TE E+ S
Sbjct: 1587 YEMPFDVKILSLYGELSQHGDLGPKLLREARKLKTLYDQSIMRIMGQHEIATEFEVFSAF 1646
Query: 700 IM 701
++
Sbjct: 1647 VL 1648
>gi|440466934|gb|ELQ36175.1| RNA-dependent RNA polymerase 1 [Magnaporthe oryzae Y34]
gi|440478755|gb|ELQ59556.1| RNA-dependent RNA polymerase 1 [Magnaporthe oryzae P131]
Length = 1977
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 241/662 (36%), Positives = 368/662 (55%), Gaps = 31/662 (4%)
Query: 55 KVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLDKLYSTVLSPLISSTN 113
KV VTPS +Y S P + +NRV+R Y + D FLR+ F DE +L++ P +
Sbjct: 1028 KVTVTPSTMYLSSPMVETTNRVLRHYNEHKDRFLRVQFTDELPTGRLHA----PNDLGAD 1083
Query: 114 EERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMG 173
+E I+ RV L+NGI IGD+ ++ LAF +SQ+++NS + F ++T IR MG
Sbjct: 1084 DE----IFSRVYRVLKNGIHIGDRHYKFLAFGSSQMRENSTYFFCDAGDVTCDSIRAWMG 1139
Query: 174 DFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAE 233
F I+NV KYAARLGQ F ++R V I+ IPD+E YCF+DG+GKIS+
Sbjct: 1140 RFSHIRNVGKYAARLGQCFSTTRSIDRVAMPWIKTIPDIEKNG----YCFTDGVGKISSL 1195
Query: 234 LAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAV-DPTSSTKLSLRKSMLKYKSESTSLDIL 292
A ++++N Y PSAFQ R GG KGV+ V + ++ +R S LK++++ + L+++
Sbjct: 1196 WAVVISENLKLD-YIPSAFQFRMGGCKGVLVVWEDVKGQEIHIRPSQLKFETDHSRLEVI 1254
Query: 293 ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL-ELMSSG 351
S + LNRQ I++L++LG+++ VFE E +A+ + + D A L + +
Sbjct: 1255 RCSHFSVASLNRQTISVLTSLGVKNEVFESMLAEQLAKYNRAMEDATAAMTLLTQYVDEN 1314
Query: 352 ENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGT 411
+ TN L L+ G+ EPF+ ML+ +R ++ L+ + R+ ++ G ++GC+DET T
Sbjct: 1315 QMTNTLARLVKAGFMESHEPFVCTMLRLWRTWSVKTLKEKARLVVEKGAFVLGCVDETKT 1374
Query: 412 LESGQVFVQCSASRRREFLDNS---------CNNRSGELGVVEGKVVVAKNPCLHPGDMR 462
L + S ++R N + S + V+ G +V +NP LHPGD+R
Sbjct: 1375 LHGHFTHIPASPNQRPRLNGNMKLPEIFLQVPDGPSRDYKVITGLCLVGRNPSLHPGDIR 1434
Query: 463 VLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP-PLQ--FPP 519
V++A+DVP L H+ D VVF G R CSG DLDGD +FV WD L+P P Q + P
Sbjct: 1435 VVQAIDVPQLRHIRDVVVFAQTGDRDIPGMCSGGDLDGDDFFVLWDERLLPLPSQRNYKP 1494
Query: 520 MDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELA 579
Y P P + L R++T +D+ ++F Y+ N SL I +AH+ AD A+ +CLELA
Sbjct: 1495 ASYHPPPARELDREVTADDLCQFFVTYMKNFSLPRIAHAHLAQADKY--GAKDEKCLELA 1552
Query: 580 KLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTA 639
L ++AVD+ KTGV A I L +P FMEK + Y S++++GKLY VK + A
Sbjct: 1553 YLHSLAVDYPKTGVPAAIRPRLMPNEFPHFMEKA-RGRYHSRKILGKLYDQVKPVNFHPA 1611
Query: 640 TIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGC 699
F ++ + D + +A K KT YD + +M + I TE E+ S
Sbjct: 1612 YEMPFDVKILSLYGELSQHGDLGPKLLREARKLKTLYDQSIMRIMGQHEIATEFEVFSAF 1671
Query: 700 IM 701
++
Sbjct: 1672 VL 1673
>gi|322705481|gb|EFY97066.1| suppressor of ascus dominance [Metarhizium anisopliae ARSEF 23]
Length = 1315
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 270/823 (32%), Positives = 427/823 (51%), Gaps = 77/823 (9%)
Query: 6 HALETLFHLRECCYEPVRWLE-EQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVY 64
H LE L E ++P++ E +V PA + YV K +T + +
Sbjct: 409 HRLEYLVDQNEILFDPMKLFSMEDATAFV--------PAARIPHYCTYVRKASITATTIR 460
Query: 65 FSGPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLDKLYSTVLSPLISSTNEERHTTIYER 123
F+ P + SNRVVR Y D FLR+ FV+E +L +L T + ++ I++R
Sbjct: 461 FNSPTVETSNRVVRKYSHLQDRFLRVQFVEESELVRLGKT----------KYKNDKIWKR 510
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
V L GI IGD+++E LAF +SQ++ +S + F L+ DIR MG F IK VAK
Sbjct: 511 VERALSQGIRIGDRQYEFLAFGSSQLRQSSAYFFCPTGHLSCEDIRAWMGQFDHIKCVAK 570
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCG 243
YAAR+GQ F ++R+ + DI+ I D++ D CF+DG+G IS L++++ +
Sbjct: 571 YAARIGQCFSTTRDIKGIWVPDIKYIDDIQRNDQ----CFTDGVGLISKFLSQLIMEEMT 626
Query: 244 FTIY-TPSAFQIRYGGYKGVVAVDPTS-STKLSLRKSMLKYKSESTSLDILANSKYQPCF 301
I+ P+AFQ R GG KGV+AV P + ++ +R S K+KS+ L+I+ +
Sbjct: 627 LDIFDKPTAFQFRMGGCKGVLAVWPQAQGMEVHIRNSQEKFKSDFQGLEIVRCAARSTAT 686
Query: 302 LNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL-ELMSSGENTNVLKEL 360
LNRQ IT+L +LG+ +F +E ++ + D +A + L + + +++ VL EL
Sbjct: 687 LNRQTITILESLGVPKKMFMALLKEQISWYENAAKDTSEAIKLLTKFVDENQSSLVLAEL 746
Query: 361 LMCGYKPD--VEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVF 418
L G+ D EPF L + + + LR +TRI + ++GC+DE+G+L +
Sbjct: 747 LKAGFMTDNVREPFTLNTFNLWLSWSFRLLREKTRIHVPKSAFVLGCVDESGSLRGHSIE 806
Query: 419 VQCSASRRRE------FLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSL 472
+ + + E FL + + G+ +++GK +V +NP LHPGD+RV++AV+ P L
Sbjct: 807 TEGCSDQLNENKLPQIFLQLTDPSHEGKTNIIQGKCIVGRNPSLHPGDIRVVQAVNNPKL 866
Query: 473 HHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP-LQFPPMDYTPAPEKVLA 531
H+ D +VFP+KG RP SG DLDGD +F+ WD LIP PMDY + L
Sbjct: 867 RHLKDVIVFPSKGDRPVPAMLSGGDLDGDDFFIIWDDRLIPKEWNHKPMDYQAPNPRQLD 926
Query: 532 RDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKT 591
RD+T++D+ E+F +Y+ ND+LG+I AH+ AD+ K S CL LA+L + AVD++KT
Sbjct: 927 RDVTVDDLREFFVNYMKNDNLGLIAVAHLAFADMHGPK--SQICLRLAELHSQAVDYAKT 984
Query: 592 GVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIK-----SFTK 646
G A ++ E +P FMEK K+ Y S + +G L+ ++A T + F K
Sbjct: 985 GEPAEFGHKMQPERWPHFMEK--KSTYRSNKALGALF---DEVAKHTFQFRPEWEHPFDK 1039
Query: 647 EVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIM---EM 703
+ ++ Y+ DM +T A + K +YD+ + LM Y ++TE E+ +G +M +
Sbjct: 1040 RI-LERYEFDMST------LTTAREIKAQYDSAIRRLMVQYHVETEYELYTGWVMSNTSI 1092
Query: 704 AKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGR 763
+ ++ ++ DL VK +E N S++ D + +A Y V R
Sbjct: 1093 SSNYKRQEDLGLEFDVVKQRFREQCC--NVAGGSEAPQLDKF--VAAMYKVTEEQVNKAR 1148
Query: 764 ---------------YKEEGMNRTHFLSFPWCIHDKLIEIKRG 791
EE F+SFPW H +I + G
Sbjct: 1149 NGGDDEPVGHQAETDSGEEPRPNVPFISFPWIFHWVMIRLAMG 1191
>gi|226490831|ref|NP_001142097.1| uncharacterized protein LOC100274261 [Zea mays]
gi|194707104|gb|ACF87636.1| unknown [Zea mays]
Length = 552
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 222/530 (41%), Positives = 319/530 (60%), Gaps = 23/530 (4%)
Query: 279 MLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDP 338
M K++S T L++++ +K+QP FLNRQ+ITLLS+L + D +F + Q ++ L+ IL+D
Sbjct: 1 MHKFESNHTVLEVVSWTKFQPGFLNRQIITLLSSLNVPDAIFAQMQEAMLSNLNNILSDS 60
Query: 339 LKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQN 398
A + + S E +L G P EP L ML R+S LL L +TRIF+
Sbjct: 61 DVAFDIVT-ASCAEQGTTAALMLSAGISPGTEPHLKAMLLAIRSSQLLGLLEKTRIFVPK 119
Query: 399 GRAMMGCLDETGTLESGQVFVQCSASRRREFLDN-----SCNNRSGELGVVEGKVVVAKN 453
GR +MGCLDE G LE GQ F++ S+ L S N + E + G +V+AKN
Sbjct: 120 GRWLMGCLDELGILEQGQCFIRASSPSLNNCLVKYGSRLSAANTNAE--TILGTIVMAKN 177
Query: 454 PCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP 513
PCLHPGD+R+L AVDVP LHH+VDC+VFP KG+RPH NE SGSDLDGD+YFV WD LIP
Sbjct: 178 PCLHPGDVRILEAVDVPELHHLVDCLVFPKKGERPHANEASGSDLDGDLYFVTWDENLIP 237
Query: 514 PLQ--FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKAR 571
P + + PMDY+PA K L R ++ D+ +F +VN+ LG I NAHVVHAD+ A
Sbjct: 238 PGKKSWNPMDYSPAEAKQLPRAVSQHDIVGFFLKNMVNEKLGPISNAHVVHADMSEYGAM 297
Query: 572 SNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAV 631
+C++LA+L+ AVDF KTG ++P+ LR ++YPDFM K+D Y S++++G+LYR++
Sbjct: 298 DEKCIQLAELAATAVDFPKTGKIVSMPASLRPKLYPDFMGKEDAISYRSEKILGRLYRSI 357
Query: 632 KDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKT 691
++ A + T YD DMEV G D+++ A++ K Y+ +L L++ YG++T
Sbjct: 358 QE-ASSDDLVPEETCTSNNLPYDADMEVAGAADFLSSAWQCKCSYETQLNALLNQYGVRT 416
Query: 692 EAEILSGCIMEMAK-SFDKKRDL-EAIIFAVKSLKKEARAWF-----NKKNESDSSHEDV 744
EAE+++ I + K S ++ D+ E + A +L KE R+ F ++ SD
Sbjct: 417 EAELVTEHIWSLPKYSSRRQGDIKERLKNAYYALHKEFRSIFESIVTDQTEISDDEKSRF 476
Query: 745 Y-AKASAWYHVAYHPSYWGR----YKEEGMNRTHFLSFPWCIHDKLIEIK 789
Y KASAWY V YHP + + +K + + LSF W + L IK
Sbjct: 477 YEMKASAWYQVTYHPEWVQKSREMFKSDCEDMPARLSFAWIAVEHLARIK 526
>gi|156035913|ref|XP_001586068.1| hypothetical protein SS1G_13161 [Sclerotinia sclerotiorum 1980]
gi|154698565|gb|EDN98303.1| hypothetical protein SS1G_13161 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1404
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 240/688 (34%), Positives = 380/688 (55%), Gaps = 36/688 (5%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEID--NFLRLSFVDEDLDKLYSTVLSPLI 109
+ K VTPS +YFS P + +NRV+R+Y E FLR+ F DE + +
Sbjct: 450 FSRKATVTPSSIYFSSPTVETTNRVLRNYSKENKEGRFLRVQFTDEKAEGRIN------- 502
Query: 110 SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIR 169
+ ++ R+ ++ RV + NGI IGD+ +E LAF NSQ ++N + F L+ DIR
Sbjct: 503 ACADKIRNDGLFTRVFRVISNGIRIGDRHYEFLAFGNSQFRENGAYFFCPPAYLSCDDIR 562
Query: 170 ESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGK 229
+ MG F I VAKYAARLGQ F ++R + + D+ IPD+E YCF+DG+GK
Sbjct: 563 QWMGTFSHINVVAKYAARLGQCFSTTRAIRGLSAPDLVKIPDIERNG----YCFTDGVGK 618
Query: 230 ISAELAEIVAKNCGF-TIYTPSAFQIRYGGYKGVVAVDPTS-STKLSLRKSMLKYKSEST 287
IS LA+++A+ T PSAFQ R GG KG++ V P + + ++ +RKS K+ +
Sbjct: 619 ISPFLAQMIAEELKLRTNSAPSAFQFRLGGCKGILVVSPDAKNNEVHIRKSQQKFTAVYN 678
Query: 288 SLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALE- 346
L+I+ S++ LNRQ IT+LS+LG++D VF E ++ +++ A L
Sbjct: 679 GLEIIRCSQFSSATLNRQTITILSSLGVKDEVFLNMLSEQLSDYQNAMSNNTIALNLLNR 738
Query: 347 LMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCL 406
+ T + +++ G+ + EPF+L +L +RA ++ L+ + +I ++NG ++GC+
Sbjct: 739 YIDDNYMTINIASMILNGFMTEKEPFVLSLLHLWRAWSIKLLKEKAKIIVENGAFVLGCV 798
Query: 407 DETGTLES-GQVFVQCSASRRRE-----FLDNSCNNRSGELGVVEGKVVVAKNPCLHPGD 460
DET TL + V C + + + F+ +G+ V+EG +V +NP LHPGD
Sbjct: 799 DETNTLRGYTKPTVACGTTYKEDELPQIFIQVPNRENTGQYNVIEGICLVGRNPSLHPGD 858
Query: 461 MRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP-LQFPP 519
+RV++AV+VP+LHH+ D VVFP G+R + CSG DLDGD +FV WD L P P
Sbjct: 859 LRVVQAVNVPALHHLRDVVVFPQSGERDVPSMCSGGDLDGDDFFVIWDKNLQPSEWNCEP 918
Query: 520 MDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELA 579
M Y L R + + D+ ++F Y+ NDSL I +AH+ ADL + + +CLELA
Sbjct: 919 MSYAALAPVTLKRPVKVRDLLKFFVKYMKNDSLPTIAHAHLAQADLLGNGIKDPKCLELA 978
Query: 580 KLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTC---YESQRVIGKLYRAVKDIAP 636
+L + AVD+ KTG A + L + +P FMEK K Y S +++G+LY V+ +
Sbjct: 979 ELHSKAVDYVKTGQPANMSRYLAPQKWPHFMEKTHKPLSKQYHSTKILGQLYDKVESLHF 1038
Query: 637 PTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEIL 696
+ F K + +++Y + + + A + KT+YD + ++ IKTE E+
Sbjct: 1039 VPQYEEPFDKRI-LRAYKLENPI------LEAARQTKTKYDTAMRRILAQQDIKTEFEVW 1091
Query: 697 SGCIMEMAK---SFDKKRDLEAIIFAVK 721
S I+ K + + ++ +I A+K
Sbjct: 1092 STFILSKPKVGSDYKLQEEMASITGALK 1119
>gi|367042188|ref|XP_003651474.1| hypothetical protein THITE_2048877 [Thielavia terrestris NRRL 8126]
gi|346998736|gb|AEO65138.1| hypothetical protein THITE_2048877 [Thielavia terrestris NRRL 8126]
Length = 1511
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 266/787 (33%), Positives = 400/787 (50%), Gaps = 83/787 (10%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
V KV+VTP+++YF+ P + +NR+VR Y D+F+R+ F DE +L I +
Sbjct: 505 VRKVIVTPTRIYFNTPTVETTNRIVRRYKQVQDHFIRVQFTDE--------LLEGRIRAC 556
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASR---PELTAADIR 169
+R +Y RV + GI +G ++ LAF NSQ+++N + F P++T IR
Sbjct: 557 EVDRDDELYTRVYRVMMQGIRMGRWHWKFLAFGNSQIRENGAFFFCQAEGYPDITCDTIR 616
Query: 170 ESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGK 229
+ MG+F I VAK AARLGQ F ++R + S I IPDVE +CF+DG+GK
Sbjct: 617 QWMGNFSHISTVAKLAARLGQCFSTTRLLRCISSPWIVKIPDVEKGG----FCFTDGVGK 672
Query: 230 ISAELAEIVAKNCGFTIYTP-SAFQIRYGGYKGVVAVDPTS-STKLSLRKSMLKYKSEST 287
IS LA +V+++ + IY P SAFQ R GG KGV+ P + ++ +R S K+ +E
Sbjct: 673 ISMVLASLVSQD--WKIYPPPSAFQFRMGGCKGVLVTWPDAKGMEVHIRPSQEKFSAEYN 730
Query: 288 SLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALEL 347
L+I+ S++ LNRQ I +LS LG+ D VF E ++ DA +TD KA +EL
Sbjct: 731 GLEIIRCSQFSCATLNRQTILILSCLGVPDDVFTSMMDEQISNYDAAMTDKDKA---VEL 787
Query: 348 MSSGENTNV----LKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMM 403
+SS + N+ + +++ G+ EPF+ +LQ +R+ ++ L+ + R+ + G ++
Sbjct: 788 LSSYVDENMTSTTIARMVLNGFMHTQEPFVRTLLQLWRSWSIKGLKEKARLIVDQGAFVL 847
Query: 404 GCLDETGTLES----------------GQVFVQCSASRRREFLDNSCNNRSGELGVVEGK 447
GC+DETG+L Q+F+Q R R G V+ G
Sbjct: 848 GCVDETGSLRGHSKATEGRKKIAQHHLPQIFLQVPDPRDR-----------GAYKVITGL 896
Query: 448 VVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCW 507
+V +NP LHPGD+RV+ AVD+P L H+ D VVFP G R + CSG DLDGD +FV W
Sbjct: 897 CLVGRNPSLHPGDIRVVEAVDLPQLRHLRDVVVFPLSGDRDIPSMCSGGDLDGDDFFVIW 956
Query: 508 DHELIPP-LQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLE 566
D +LIPP PPM+Y+ R T + + +F ++ ND L +I +AH+ AD E
Sbjct: 957 DPKLIPPEWSHPPMNYSAPKSLTEPRASTAKSLATFFVLFMKNDRLPLIAHAHLATADYE 1016
Query: 567 PDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGK 626
+ A+ +CL+LA+L + AVD+ KTGV A L YP FMEK Y S V+GK
Sbjct: 1017 VEGAKHRKCLQLAELHSTAVDYVKTGVPAEWNKKLDPRKYPHFMEKPKSKSYHSTSVLGK 1076
Query: 627 LYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFE----DYITDAFKYKTEYDNRLGN 682
LY V + F + D + F + + +A K KT+YD +
Sbjct: 1077 LYDMVDRVV--------FDNSDNYKLPFDDRILSRFHPLGSNILKEARKIKTQYDIAMRR 1128
Query: 683 LMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESDSSHE 742
+M I+TE E+ + ++ + + E + LKK+ R K E H
Sbjct: 1129 IMGQLEIRTEFEVWTAFVLSKPRVGTDYKVQEKVGREAAGLKKQFRDLCLKVAE--EHHF 1186
Query: 743 DVYAKASAWYHVAYHPSYWGRYKEE----------GMNRTH-----FLSFPWCIHDKLIE 787
D A+A Y V + + Y+ G+ R +SFPW ++L
Sbjct: 1187 DRLEFAAAMYRVTWEETRIALYEARQPHVLPDGTVGLRRISARSMPLISFPWLFPNELGR 1246
Query: 788 IKRGKQR 794
I G +R
Sbjct: 1247 IAIGAER 1253
>gi|242812975|ref|XP_002486072.1| RNA-directed RNA polymerase (Sad-1), putative [Talaromyces stipitatus
ATCC 10500]
gi|218714411|gb|EED13834.1| RNA-directed RNA polymerase (Sad-1), putative [Talaromyces stipitatus
ATCC 10500]
Length = 1341
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 250/689 (36%), Positives = 379/689 (55%), Gaps = 39/689 (5%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
V VTPS +Y++ P + ++NRV+R Y + D FLR+ F DE + I+ST
Sbjct: 501 VRTATVTPSMIYWNTPSMEITNRVLRRYSEHADRFLRVRFKDEKFEGR--------INST 552
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESM 172
+ + I+ R+ T+ NGIV+GD+K+E LAF NSQ +++ + FAS +TA++IR M
Sbjct: 553 HHDTMDEIFSRIKRTMTNGIVLGDRKYEFLAFGNSQFREHGAYFFASDAHVTASNIRAWM 612
Query: 173 GDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISA 232
G+F DIKNVAKYAARLGQ F ++R A++ +++ IPDVE Y FSDG+G+IS
Sbjct: 613 GEFSDIKNVAKYAARLGQCFSTTR-AINTCRVELKRIPDVERG----PYTFSDGVGRISR 667
Query: 233 ELAEIVAKNCGFTIY---TPSAFQIRYGGYKGVVAV-DPTSSTKLSLRKSMLKYKSESTS 288
LA++ + PSA+Q R GG KG++ + D ++ +R S K+ +
Sbjct: 668 FLAQMTQQELNIRTADQEPPSAYQFRLGGCKGMLVLSDEPRGREIEIRPSQEKFPANHQG 727
Query: 289 LDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQL-DAILTDPLKAHEALEL 347
L+I+ S++ LNRQLI +LS+LGI D VF K + V+ L +A D H +
Sbjct: 728 LEIIRWSQFSSATLNRQLIAVLSSLGIEDKVFHGKLQRMVSNLEEATHYDRAAMHLLQKY 787
Query: 348 MSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLD 407
+ E T V+ +++ G+ +PF+ ++ ++A + L+ + +I I++G ++G +D
Sbjct: 788 IDPNEMTLVISKIVSDGFLQARDPFITSVITLWKAWQIKYLKEKAKITIEDGACVLGVMD 847
Query: 408 ETGTLE--SGQVFVQCSASRRR------EFLDNSCNNRSGELGVVEGKVVVAKNPCLHPG 459
ET TL+ S + + SR E + GVVEG ++A+NP LHPG
Sbjct: 848 ETATLKGFSYENVEKVHLSRDSKLDALPEIFLQVYRADEKKYGVVEGVCILARNPSLHPG 907
Query: 460 DMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQF-P 518
D+RV+RAV+ L H+ D VV P G R + CSG DLDGD Y V WD +LIP F
Sbjct: 908 DIRVVRAVNRSELAHLKDVVVLPQVGDRDIASMCSGGDLDGDDYLVIWDQDLIPSQWFRT 967
Query: 519 PMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLEL 578
PMDYT L R +T+ D+ +F +Y+ NDSL I +AH+ AD D S +C+ L
Sbjct: 968 PMDYTAIKGVNLNRAVTVNDITTFFVNYMKNDSLPKIAHAHMAWADYLEDGVESAKCIRL 1027
Query: 579 AKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDK---TCYESQRVIGKLYRAVKDIA 635
A+L + AVD++KTG A +P LR +P FMEK K Y S++++G+LY AV +
Sbjct: 1028 AQLHSNAVDYNKTGEPAYLPRDLRPRKWPHFMEKNYKPKDQIYHSEKILGQLYDAVDRVD 1087
Query: 636 PPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEI 695
+ F K V + E+ F + K +YD L +M + I+TE EI
Sbjct: 1088 FHPDFDRPFDKRVLEAGIEVTDEILQF------VKELKVDYDLSLKRIMAQHEIRTEFEI 1141
Query: 696 LSGCIM---EMAKSFDKKRDLEAIIFAVK 721
S ++ ++K + +L I A+K
Sbjct: 1142 WSTFVLGHANLSKDYKFHEELGGITKAIK 1170
>gi|295667341|ref|XP_002794220.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226286326|gb|EEH41892.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1273
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 247/714 (34%), Positives = 400/714 (56%), Gaps = 50/714 (7%)
Query: 49 GLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLDKLYSTVLSP 107
G Y+ VTPS +Y+ P I NRV+R Y + D FL + F DE ++ K++
Sbjct: 460 GCCYMRSAEVTPSTIYYKPPSIDTGNRVLRRYREYADRFLHVRFTDEKNMGKIFP----- 514
Query: 108 LISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAAD 167
S+ N +Y RV T++NGI IGD+ +E LAFSN+Q+++++ + FAS P LTAA+
Sbjct: 515 -YSNANIVCMNEVYTRVTLTMKNGITIGDRCYEFLAFSNAQLREHAAYFFASLPHLTAAN 573
Query: 168 IRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGI 227
IR +G F I+NVAK+AARLGQ F S+R ++ ++I+ ++E +G Y FSDG+
Sbjct: 574 IRAQLGKFNQIRNVAKHAARLGQCFSSTRA---LNGCPVQIVEIDDIERNG--YTFSDGV 628
Query: 228 GKISAELAEIVAKNCGFTIYT-----PSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLK 281
G IS LA+++ F I T PS FQ R GG KG++ V + + + +RKS K
Sbjct: 629 GLISTFLAQMIQSE--FAIETLSGEPPSVFQFRLGGCKGILTVSSKAHRREVHIRKSQYK 686
Query: 282 YKSESTSLDILANSKYQPCF--LNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPL 339
+ + L+I+ +S + CF LNRQLI +LS+LGI D +F KK + + L+ +T
Sbjct: 687 FAAPHNGLEIIRHSSF--CFASLNRQLIIVLSSLGIPDEIFVKKLQVMLENLELAMTSQE 744
Query: 340 KAHEALE-LMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQN 398
+A L+ + + T VL ++++ G++ +PF+ +L+ +R + L+ + +I I
Sbjct: 745 QAVNLLQTYVDPNQMTLVLADMVLDGFQQSQDPFVTSLLELWRVWQIKYLKAKAKIAIDK 804
Query: 399 GRAMMGCLDETGTLES---------GQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVV 449
G ++GCLDETG+L+ G + Q F+ S + V+EG +
Sbjct: 805 GAFLLGCLDETGSLKGYFRSKRPGGGATYEQKLDCLPEIFVQIS-RHSEDTYEVIEGLCI 863
Query: 450 VAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDH 509
+A+NP LHPGD+RV++AVD+P LHH+ D VV P G R + CSG DLDGD Y V WD
Sbjct: 864 LARNPSLHPGDIRVVKAVDIPDLHHLKDVVVLPQTGDRDIASMCSGGDLDGDDYVVIWDQ 923
Query: 510 ELIPPLQF-PPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPD 568
+L+P F PMDY+ +VL RD+T++D+ ++F Y+ ND L I AH+ AD D
Sbjct: 924 DLLPKDWFEEPMDYSAPKSEVLDRDVTVDDIIKFFVSYMQNDRLPQIAPAHLAIADYSDD 983
Query: 569 KARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEK---QDKTCYESQRVIG 625
+ +CL LA L + AVD++K+G+ + L+ + +P FME+ + + Y S++++G
Sbjct: 984 GVQDEKCLRLATLHSAAVDYNKSGMPVHMNRDLKPKKWPHFMERKFAKKDSQYTSRKILG 1043
Query: 626 KLYRAVK----DIAPPTATIK-SFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRL 680
+LY ++ P +A + F + + +++ D ++ F A + K EYD +
Sbjct: 1044 QLYDIAGGVYLNLQPHSAKRRLPFDQRILNANFEIDDKLLSF------AKELKAEYDADI 1097
Query: 681 GNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKK 734
+M + I++E E+ S ++ A + E I +L+++ R ++K
Sbjct: 1098 RRIMAQHEIQSEEEVWSTFVLSHANMSKDYKFHEEIGLISSALRQKFRMLCHEK 1151
>gi|398388269|ref|XP_003847596.1| RNA-directed RNA polymerase, partial [Zymoseptoria tritici IPO323]
gi|339467469|gb|EGP82572.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
Length = 959
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 238/655 (36%), Positives = 362/655 (55%), Gaps = 57/655 (8%)
Query: 58 VTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERH 117
+TP+ +YF+ P + SNRVVR+Y D F+R+ F DE + S + +
Sbjct: 237 ITPTTIYFATPVLETSNRVVRNYKKYEDRFMRVKFTDEKHKGQ--------LQSQDGQAM 288
Query: 118 TTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRD 177
++ R+ + +GI + D+ +E LAF N+Q +++ + FAS P+L A IR+ MG+F
Sbjct: 289 NEVFSRIKQAMTHGIRVADRHYEFLAFGNAQFREHGAYFFASTPDLNANMIRQWMGNFTQ 348
Query: 178 IKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEI 237
IKNVAKY +RLGQ + ++R H S ++E IPDVE YCF+DG+GKIS LA +
Sbjct: 349 IKNVAKYISRLGQCYTTTRAIPH--SVNVERIPDVERNG----YCFTDGVGKISPLLARM 402
Query: 238 VAK-----NCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYKSESTSLDI 291
VA NC PS +Q R G KGV+AVDP+ + +R S K+ +E L+I
Sbjct: 403 VADHFRLDNC------PSVYQFRMAGCKGVLAVDPSLKGMTVQIRPSQEKFPAEFHGLEI 456
Query: 292 LANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALEL-MSS 350
S++ LN QLI ++S+LG+ D+VF K R+ +A L +TD A + L+ +
Sbjct: 457 CKMSQFSAANLNVQLILVMSSLGVPDNVFVNKYRDMLADLALAMTDEEMALKLLQKNIDF 516
Query: 351 GENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETG 410
+ T L +++ G+ +PF + L+ +R+ NL L+ + R+F+ G + G DETG
Sbjct: 517 NQMTIYLATIILDGFMATKDPFTISCLRLWRSWNLKYLKEKARVFVDQGAFVFGVTDETG 576
Query: 411 TLE-------SGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRV 463
TL+ + + + + + FL N G V++G + A+NP LHPGD+R+
Sbjct: 577 TLQGQFDGFKTDEGDMAVPPTLPQIFLQIPDPNAKGGYTVIQGPCLFARNPSLHPGDIRM 636
Query: 464 LRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYT 523
+ AVDVP+LHH+ DCVV P G R N CSG DLDGD Y +CWD +L PP+ D
Sbjct: 637 VEAVDVPALHHLKDCVVLPQTGDRDLANMCSGGDLDGDDYLICWDADLFPPVS----DTG 692
Query: 524 PAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLST 583
P +T++D+ +F +YI N+ LG I + H AD E D ++ +CL+LA L +
Sbjct: 693 P---------VTVDDMTSFFVNYIKNNKLGQIASHHRFWADKEDDGVKNEKCLQLANLHS 743
Query: 584 IAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVK-DIAPPTATIK 642
+AVD+ KTGV AT+P L+V+ P + E + ++ Y S++V+G+LY VK D P +
Sbjct: 744 LAVDYVKTGVPATLPVELKVKARPHWAEARGQS-YTSRKVLGQLYDEVKLDNFQPAWEL- 801
Query: 643 SFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILS 697
F + T + I A + K EYD + +M YGI E E+ +
Sbjct: 802 PFDARILTADTPT-------PELIAGATEVKAEYDETMRRIMKQYGITNEFEVFT 849
>gi|451997457|gb|EMD89922.1| hypothetical protein COCHEDRAFT_1138647 [Cochliobolus heterostrophus
C5]
Length = 1228
Score = 400 bits (1029), Expect = e-108, Method: Compositional matrix adjust.
Identities = 260/779 (33%), Positives = 411/779 (52%), Gaps = 64/779 (8%)
Query: 56 VLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEE 115
V +TP+ ++ + P + SNR++R Y + D F+R+ F DE + + +
Sbjct: 395 VTITPTMMHVATPVMETSNRIIRKYEADADRFIRVRFTDEKNEGQ--------LRNQPNG 446
Query: 116 RHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDF 175
R +++RV ++NGIV+ + +E LAF NSQ ++N + +A +A DIR S+G+F
Sbjct: 447 RAEAVFDRVFRAMKNGIVVAGRYYEFLAFGNSQFRENGAYFYAPTSSKSANDIRISLGEF 506
Query: 176 RDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELA 235
IK V+K+AARLGQ F ++R A+ V + ++ PD + + + F+DG+GK+S LA
Sbjct: 507 DHIKTVSKFAARLGQCFSTTR-AMGV-TVELTTTPDKKHNN----FIFTDGVGKLSPFLA 560
Query: 236 EIVAKNCGF-TIYT--PSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYKSESTSLDI 291
++ A+ G +T PS FQ R GG KGV+A+DP ++ +R S K+++ T L+I
Sbjct: 561 QMAAQELGLANAFTDPPSLFQFRLGGSKGVLALDPKLKRNQVKIRPSQYKFRAPYTGLEI 620
Query: 292 LANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL-ELMSS 350
+ +S + + NRQ+I +LS LG++D VF +KQ + + + D A + L + +
Sbjct: 621 IRSSSFATPYFNRQIILVLSYLGVQDAVFLRKQEDMMNDYSRAMADETTALQKLRKNIDI 680
Query: 351 GENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETG 410
+ T + +++ G+ EPF++ +L +RA + L+ + RI I NG ++GC+DET
Sbjct: 681 NQTTLTMAAMVLDGFMGSREPFIMSLLALWRACTIKNLKEKARIAIDNGAFLLGCVDETK 740
Query: 411 TLESGQVFVQCSASRRRE---------FLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDM 461
L+ Q R+ FL S N G ++EG +VA+NP LHPGD+
Sbjct: 741 KLKGHFNDPQSRRDATRDEKLATLPEIFLQVSDPNSKGHYIIIEGICIVARNPSLHPGDV 800
Query: 462 RVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP-LQFPPM 520
RV+RAV+V LHH+ + VVFP G R N CSG DLDGD Y V WD +L+P + PPM
Sbjct: 801 RVVRAVNVEELHHLKNVVVFPQTGDRDLANMCSGGDLDGDDYMVLWDTDLLPERINEPPM 860
Query: 521 DYTPAPEKVLARDMTIE--DVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLEL 578
D+T PEK + D I D+ +F +YI ND+LG I +AH+ AD + CLEL
Sbjct: 861 DFT--PEKAVEIDGPISALDMARFFVNYIKNDALGPIAHAHLAQADFNENGVGDPICLEL 918
Query: 579 AKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQ---DKTCYESQRVIGKLYRAVKDIA 635
A+L + AVDF K+G+ A + LR + +P FMEK+ Y+S++++G LY VK I
Sbjct: 919 AELHSRAVDFPKSGIPAEMKRELRPKKWPHFMEKKYLSQHQIYKSKKILGLLYDEVKLID 978
Query: 636 PPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEI 695
F K + ++++D D E+ + A K YD L LM +GIKTE E
Sbjct: 979 FEPQWENPFDKRI-LEAFDLDQEL------LDKAASLKLSYDEALRRLMAKHGIKTEFEA 1031
Query: 696 LSGCIMEMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESDSSHEDVYAK----ASAW 751
S ++ + E + +LK + R+ N ++ S + +A+ +A
Sbjct: 1032 WSVFVLVHNHESGDYKFAEEFGRTIAALKHQFRS--ECSNAAELSDNNDWARLGPFVAAM 1089
Query: 752 YHVAYH------------PSYWGR---YKEEGMNRTHFLSFPWCIHDKLIEIKRGKQRS 795
Y V H + GR + + +SFPW +L +I G + S
Sbjct: 1090 YTVTAHEMENALDECTKTKTVGGRTVPLRIKDPEHMPLISFPWLFPSELGKIATGGRTS 1148
>gi|212544602|ref|XP_002152455.1| RNA-directed RNA polymerase (Sad-1), putative [Talaromyces marneffei
ATCC 18224]
gi|210065424|gb|EEA19518.1| RNA-directed RNA polymerase (Sad-1), putative [Talaromyces marneffei
ATCC 18224]
Length = 1359
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 242/701 (34%), Positives = 384/701 (54%), Gaps = 63/701 (8%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
+ VTPS +Y++ P + ++NRV+R Y + D FLR+ F DE + I+ST
Sbjct: 515 IRTATVTPSTIYWNTPSMEITNRVLRRYSEHADRFLRVRFKDEKFEGR--------INST 566
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESM 172
+ + I+ R+ T+ NGI++GD+K+E LAF NSQ +++ + FAS +TAA+IR M
Sbjct: 567 HHDTMDEIFARIKRTMSNGIILGDRKYEFLAFGNSQFREHGAYFFASEAHVTAANIRAWM 626
Query: 173 GDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISA 232
G+F +I+N+AKYAARLGQ F ++R A++ + +++ IPDVE Y FSDG+G+IS
Sbjct: 627 GEFSEIRNIAKYAARLGQCFSTTR-AINTCTVELKRIPDVERG----GYTFSDGVGRISR 681
Query: 233 ELAEIVAKNCGFTI---YTPSAFQIRYGGYKGVVAV-DPTSSTKLSLRKSMLKYKSESTS 288
LA++ + PSA+Q R GG KG++ + D ++ +R S K+ +
Sbjct: 682 FLAQMTQQELKIKTPDKEPPSAYQFRLGGCKGMLVLSDVPRGREIQIRPSQEKFPANHQG 741
Query: 289 LDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALE-L 347
L+I+ S++ LNRQLI +LS+LG+ D VF +K R V+ L+ D A L+
Sbjct: 742 LEIIRWSQFSSATLNRQLIAVLSSLGVSDEVFHEKLRRMVSNLEEATRDDRAAMRLLQKY 801
Query: 348 MSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLD 407
+ E T VL +++ G+ +PF+ ++ ++A ++ L+ + +I I++G ++G LD
Sbjct: 802 IDPNEMTLVLSKMVSDGFLQSRDPFVTSIITLWKAWSIKYLKEKAKITIEDGACLLGVLD 861
Query: 408 ETGTLES--------------------GQVFVQCSASRRREFLDNSCNNRSGELGVVEGK 447
ET TL+ ++F+Q + +++ C V++G
Sbjct: 862 ETATLQGFSYEKVKKPHLSRESKLDALPEIFLQVYRADEKKY----C--------VIKGV 909
Query: 448 VVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCW 507
++A+NP LHPGD+RV+RAVD P L H+ D VV P G R + CSG DLDGD Y V W
Sbjct: 910 CILARNPSLHPGDIRVVRAVDRPELAHLKDVVVLPQLGDRDIASMCSGGDLDGDDYLVIW 969
Query: 508 DHELIPPLQF-PPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLE 566
D +L+P F PMDY P L R +T+ D+ +F +Y+ NDSL I +AH+ +D
Sbjct: 970 DKDLVPNQWFRAPMDYAPIKGVNLDRSVTVNDITTFFVNYMKNDSLPRIAHAHLAWSDFL 1029
Query: 567 PDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDK---TCYESQRV 623
+ S +C+ LA+L + AVD++KTG A +P LR +P FMEK K Y+S+++
Sbjct: 1030 MNGVESPKCIRLAQLHSNAVDYNKTGEPAYLPRDLRPRRWPHFMEKNYKPKDQTYQSKKI 1089
Query: 624 IGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNL 683
+G+LY AV + F K V + F A + K +YD L +
Sbjct: 1090 LGQLYDAVDRVDFHPDFDVPFDKRVLESGVSVTDNIMQF------ARELKVDYDLALKRI 1143
Query: 684 MDYYGIKTEAEILSGCIM---EMAKSFDKKRDLEAIIFAVK 721
M + I+TE E+ S ++ ++K + +L I A+K
Sbjct: 1144 MAQHEIRTEFEVWSTFVLSHANLSKDYKFHEELGGITKALK 1184
>gi|154290540|ref|XP_001545863.1| hypothetical protein BC1G_15614 [Botryotinia fuckeliana B05.10]
Length = 1173
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 237/688 (34%), Positives = 373/688 (54%), Gaps = 36/688 (5%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDN--FLRLSFVDEDLDKLYSTVLSPLI 109
+ K VTP+ + F+ P + +NRV+R Y E FLR+ F DE + +
Sbjct: 223 FSRKATVTPTSILFNSPTVETTNRVLRHYSKENQEGRFLRVQFTDEKFEGRIN------- 275
Query: 110 SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIR 169
S ++ R+ I+ RV + NGI IGD+ +E LAF NSQ ++N + F L+ DIR
Sbjct: 276 SCADKIRNDAIFTRVFRVISNGIRIGDRHYEFLAFGNSQFRENGAYFFCPSANLSCNDIR 335
Query: 170 ESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGK 229
+ MG F I VAKYAARLGQ F ++R + + DI IPD+E YCF+DG+GK
Sbjct: 336 QWMGTFSHINVVAKYAARLGQCFSTTRAIKGLSAPDIVKIPDIERG----RYCFTDGVGK 391
Query: 230 ISAELAEIVAKNCGFTI-YTPSAFQIRYGGYKGVVAVDPTSS-TKLSLRKSMLKYKSEST 287
IS LA+++A + PSAFQ R GG KG++ V P + ++ +RKS K+ +
Sbjct: 392 ISPYLAQMIASELKLRVDLAPSAFQFRLGGCKGILVVSPDAKDNEVHIRKSQQKFTAAYN 451
Query: 288 SLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALE- 346
L+I+ S++ LNRQ IT+LS LG++D VF K ++ + +++ A L
Sbjct: 452 GLEIIRCSQFSSATLNRQTITILSALGVKDEVFLKMLSRQLSDYQSAMSNNAIALGLLNR 511
Query: 347 LMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCL 406
+ T + +++ G+ + EPF+L +L +RA ++ L+ + +I ++NG ++GC+
Sbjct: 512 YIDDNHMTINIAGMILNGFMSEKEPFVLSLLHLWRAWSIKLLKEKAKIIVENGAFVLGCV 571
Query: 407 DETGTLESGQVFVQCSASRRRE------FLDNSCNNRSGELGVVEGKVVVAKNPCLHPGD 460
DET TL + +E F+ + + V+EG +V +NP LHPGD
Sbjct: 572 DETNTLRGYTKPTVAYGTTYKETELPQIFIQVPDRENTTQYNVIEGICLVGRNPSLHPGD 631
Query: 461 MRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP-LQFPP 519
+RV++AV++P+LHH+ D VVFP G+R + CSG DLDGD +FV WD +L P P
Sbjct: 632 LRVVQAVNIPALHHLRDVVVFPQSGERDVPSMCSGGDLDGDDFFVIWDKDLQPTEWNCEP 691
Query: 520 MDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELA 579
M Y L R + + D++++F Y+ NDSL I +AH+ AD + + +CL+LA
Sbjct: 692 MSYAALDPVALKRPVVVTDLQKFFVKYMKNDSLPSIAHAHLAQADYQKQGIKDPKCLKLA 751
Query: 580 KLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTC---YESQRVIGKLYRAVKDIAP 636
+L + AVD+ KTG AT+ L +P FMEK + Y SQ+++G+LY V+ +
Sbjct: 752 ELHSKAVDYVKTGQPATMQKYLAPPKWPHFMEKIHQPASKQYHSQKILGQLYDKVESVDF 811
Query: 637 PTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEIL 696
+ F K + +++Y+ D + A + KT+YD + ++ IKTE E+
Sbjct: 812 VPQYEEPFDKRI-LRAYELDNAT------LKAARQTKTKYDTAMRRILAQQDIKTEFEVW 864
Query: 697 SGCIMEMAK---SFDKKRDLEAIIFAVK 721
S I+ K + + D+ I A+K
Sbjct: 865 STFILSKPKVGSDYKLQEDMAVITGALK 892
>gi|414877742|tpg|DAA54873.1| TPA: hypothetical protein ZEAMMB73_768916 [Zea mays]
Length = 937
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 229/517 (44%), Positives = 315/517 (60%), Gaps = 25/517 (4%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS------ 106
V ++++TP+K Y PE+ SNRV+R Y + D FLR++F+DE + L S VL+
Sbjct: 425 VRRLVITPTKAYCMPPEVERSNRVIRHYSEVSDRFLRVTFMDERMQMLNSNVLNFSAAQI 484
Query: 107 --PLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELT 164
L+S++ + TT+Y+RV + L G + +K+ LAFS++Q++D S W FA T
Sbjct: 485 VKDLMSNSFLHK-TTVYKRVKTFLTEGFHMCGRKYSFLAFSSNQLRDRSAWFFAEDRTTT 543
Query: 165 AADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFS 224
IR+ MG F KNVAK+AAR+GQ F S+ + + ++ D EVE +G Y FS
Sbjct: 544 VETIRKWMGRFTS-KNVAKHAARMGQCFSSTYATVVLQPHEVNECLD-EVEHNG--YIFS 599
Query: 225 DGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAV--DPTSSTKLSLRKSMLKY 282
DGIGKI+ +LA VA+ T PSA+QIRY G+KGV++V +LSLR SM K+
Sbjct: 600 DGIGKITCDLALEVAQKLQLTDNPPSAYQIRYAGFKGVISVWEGKNDGIRLSLRPSMHKF 659
Query: 283 KSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAH 342
+S T L++++ +K+QP FLNRQ+ITLLS+L + D +F + Q ++ L+ IL+D A
Sbjct: 660 ESNHTVLEVVSWTKFQPGFLNRQIITLLSSLNVPDAIFAQMQEAMLSNLNNILSDSDVAF 719
Query: 343 EALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAM 402
+ + S E +L G P EP L ML R+S LL L +TRIF+ GR +
Sbjct: 720 DIVT-ASCAEQGTTAALMLSAGISPGTEPHLKAMLLAIRSSQLLGLLEKTRIFVPKGRWL 778
Query: 403 MGCLDETGTLESGQVFVQCSASRRREFLDN-----SCNNRSGELGVVEGKVVVAKNPCLH 457
MGCLDE G LE GQ F++ S+ L S N + E + G +V+AKNPCLH
Sbjct: 779 MGCLDELGILEQGQCFIRASSPSLNNCLVKYGSRLSAANTNAE--TILGTIVMAKNPCLH 836
Query: 458 PGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ- 516
PGD+R+L AVDVP LHH+VDC+VFP KG+RPH NE SGSDLDGD+YFV WD LIPP +
Sbjct: 837 PGDVRILEAVDVPELHHLVDCLVFPKKGERPHANEASGSDLDGDLYFVTWDENLIPPGKK 896
Query: 517 -FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSL 552
+ PMDY+PA K L R ++ YIV SL
Sbjct: 897 SWNPMDYSPAEAKQLPRAVSQHFWTMSLYGYIVFYSL 933
>gi|330935167|ref|XP_003304850.1| hypothetical protein PTT_17559 [Pyrenophora teres f. teres 0-1]
gi|311318353|gb|EFQ87064.1| hypothetical protein PTT_17559 [Pyrenophora teres f. teres 0-1]
Length = 1458
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 229/664 (34%), Positives = 368/664 (55%), Gaps = 39/664 (5%)
Query: 56 VLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEE 115
V++TP+ ++ + P + SNR++R Y + D F+R+ F DE + + S
Sbjct: 575 VVITPTMMHVASPVMETSNRIIRKYAADSDRFIRVKFSDEKTEGQ--------LRSMPNG 626
Query: 116 RHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDF 175
+ +++RV +R+GIV+ + +E LAF NSQ +++ + +A +A DIR S+GDF
Sbjct: 627 KSEAVFDRVRRAMRHGIVVAGRYYEFLAFGNSQFREHGAYFYAPTSSKSADDIRLSLGDF 686
Query: 176 RDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELA 235
IK VAK+ ARLGQ F ++R ++I P ++E +G + F+DG+GK+S +A
Sbjct: 687 TQIKTVAKFGARLGQCFSTTRAM----REKVKITPIPDIERNG--HTFTDGVGKLSPFVA 740
Query: 236 EIVAKNCGFTIY---TPSAFQIRYGGYKGVVAVD-PTSSTKLSLRKSMLKYKSESTSLDI 291
++ AK G + PS FQ R GG KGV+A+D + T++ +R S K+ ++ L+I
Sbjct: 741 KMAAKELGLSNAFDDPPSLFQFRLGGCKGVLALDLNITGTEVHIRPSQQKFHAKFMGLEI 800
Query: 292 LANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL-ELMSS 350
+ +S F NRQ+I +LS LG+ DHV KKQ+E V + +TD A + L + +
Sbjct: 801 IRSSALATPFFNRQIIVVLSHLGVPDHVIIKKQQEMVNDYETAMTDESIALQKLRKHIDM 860
Query: 351 GENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETG 410
++T + +++ G+ +PF++ +L+ +RA + L+ + RI I++G ++GC+DET
Sbjct: 861 NQSTLTMAAMVLDGFMKIQDPFMMSLLKLWRACTIKNLKEKARIAIEDGAFVLGCVDETA 920
Query: 411 TLESGQVFVQCSASRRRE---------FLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDM 461
L+ Q R+ FL ++ G ++EG ++A+NP LHPGD+
Sbjct: 921 KLKGHMNDPQSRLDATRDEKLATLPEIFLQVDDTDKKGHYKIIEGVCILARNPSLHPGDL 980
Query: 462 RVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP-LQFPPM 520
RV+RAV++P L H+ + VV P G R N CSG DLDGD Y V WD LIP + PPM
Sbjct: 981 RVVRAVNIPELRHLKNVVVLPQTGDRDLANMCSGGDLDGDDYMVLWDAALIPKTINVPPM 1040
Query: 521 DYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAK 580
D+TP + + ++ D+ E+F Y+ ND+LG I +AH+ AD D CL LA+
Sbjct: 1041 DFTPEKPEEIDGPISAADIGEFFVTYMKNDTLGQIAHAHLAQADFRADGVNDETCLALAE 1100
Query: 581 LSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKT---CYESQRVIGKLYRAVKDIAPP 637
L + AVDF K+G+ A + LR +P FMEK+ + Y S +++G LY V+ +
Sbjct: 1101 LHSKAVDFPKSGLPAEMDRELRPRKWPHFMEKKHISQYKIYRSTKILGMLYDQVQLVDFK 1160
Query: 638 TATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILS 697
F K V + ++D D + A + K+ YD+ L LM +GI+TE E S
Sbjct: 1161 PQWENPFDKRV-LDAFDLDATMKA------KAAEIKSSYDDSLRRLMAKHGIRTEFEAWS 1213
Query: 698 GCIM 701
++
Sbjct: 1214 VFVL 1217
>gi|396468594|ref|XP_003838211.1| hypothetical protein LEMA_P117350.1 [Leptosphaeria maculans JN3]
gi|312214778|emb|CBX94732.1| hypothetical protein LEMA_P117350.1 [Leptosphaeria maculans JN3]
Length = 1004
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 238/714 (33%), Positives = 383/714 (53%), Gaps = 48/714 (6%)
Query: 6 HALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYF 65
H LE + + YEP+ V S + S + D + V++TP+ +Y
Sbjct: 8 HILERVVDKQHVYYEPMD---------VFSLKIRGSLKRKVPDYCVLQRSVVITPTMMYV 58
Query: 66 SGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVL 125
+ P + SNR+ R Y + D F+R+ F DE + + + + R ++ RV
Sbjct: 59 ASPLMETSNRITRKYAADADRFIRVKFSDEKNEGV--------LRNMPGNRAEAVFSRVH 110
Query: 126 STLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYA 185
+ G+V+ + +E LAF NSQ +++ + +A +A DIR S+G F IK VAK+
Sbjct: 111 HAMTQGVVVAGRYYEFLAFGNSQFREHGAYFYAPTSSKSADDIRISLGKFDHIKTVAKFG 170
Query: 186 ARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFT 245
AR+GQ F ++R+ +S ++ I DVE + F+DG+GK+S +A++ AK G
Sbjct: 171 ARIGQCFSTTRKMR--NSVILQEIDDVERNG----HTFTDGVGKLSLFIAQMAAKELGLP 224
Query: 246 IY---TPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYKSESTSLDILANSKYQPCF 301
P+ FQ R GGYKGV+A+DP+ +++ +R S K+ +E + L+I+ +S F
Sbjct: 225 NPFDDPPTLFQFRLGGYKGVLALDPSIQKSEVHVRPSQHKFVAEYSGLEIIRSSALATPF 284
Query: 302 LNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL-ELMSSGENTNVLKEL 360
NRQ+I +LS LG+ DHVF +KQ+ V + ++D A + L + + + T + +
Sbjct: 285 FNRQIIMVLSNLGVSDHVFIRKQQNMVNDYENAMSDEQIAVQKLRKHIDMNQTTLTMAGM 344
Query: 361 LMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQ 420
++ G+ EPF++ +L +R+ + L+ + RI +++G ++GC+DE+ L+ Q
Sbjct: 345 VLDGFMKSQEPFVMSLLMLWRSHTIKNLKEKARIAVEDGAFVLGCVDESALLKGHMDDPQ 404
Query: 421 CSASRRRE---------FLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS 471
R+ F+ + G ++EG V+A+NP LHPGD+RV+RAVD+P+
Sbjct: 405 SRLDATRDEKLATLPEIFMQVDDTTKPGHYKIIEGLCVLARNPSLHPGDLRVVRAVDIPA 464
Query: 472 LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP-LQFPPMDYTPAPEKVL 530
L H+ + VV P G+R + CSG DLDGD Y V WD L+P + PPMD+TP
Sbjct: 465 LRHLRNVVVLPQTGERDLASMCSGGDLDGDDYMVLWDSHLLPKIINVPPMDFTPEKPIET 524
Query: 531 ARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSK 590
+ +T ED+ ++F Y+ NDSLG I +AH+ AD+ D CLELAKL + AVD+ K
Sbjct: 525 EKPITSEDISDFFVTYMKNDSLGQIAHAHLAQADISADGINDPVCLELAKLHSQAVDYPK 584
Query: 591 TGVAATIPSGLRVEIYPDFMEKQ---DKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKE 647
+G+ A + LR + YP FMEK+ Y S++++G LY V+ + F K
Sbjct: 585 SGIPAMMDRELRPKKYPHFMEKKHLPSNKIYRSRKILGMLYDQVQLVDFQPQWENRFDKR 644
Query: 648 VAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIM 701
V +++YD D + + A K YD L LM +GI+TE E S ++
Sbjct: 645 V-LEAYDLDGSL------LQRAEGIKVAYDEALRRLMAKHGIQTEFEAWSVFVL 691
>gi|380480880|emb|CCF42174.1| RNA dependent RNA polymerase [Colletotrichum higginsianum]
Length = 1271
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 254/756 (33%), Positives = 399/756 (52%), Gaps = 43/756 (5%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
+ KV+VTPS ++F P + SNRV+R Y D F+R+ F DE LY + +
Sbjct: 444 IRKVIVTPSTMHFCSPSVEASNRVLRKYSSHQDRFIRVQFTDE----LYK---GKIYNDA 496
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESM 172
+E +++R+ L+ GI IG++ +E LAF NSQ+++ +++ F +T DIR+ M
Sbjct: 497 GDE----VFDRIYRALKRGIKIGNRIYEFLAFGNSQIRECAVYFFCPTDYVTCDDIRKWM 552
Query: 173 GDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISA 232
G+F IKNVAKYAAR+GQ F ++RE + IE D++ + YCFSDG+GKIS
Sbjct: 553 GEFNHIKNVAKYAARIGQCFSTTREIRGITVPRIEQAKDIQRGE----YCFSDGVGKISK 608
Query: 233 ELAEIVAKNCGF-TIYTPSAFQIRYGGYKGVVAVDPTS-STKLSLRKSMLKYKSESTSLD 290
LAE+V G + PSAFQ R GG KG++AV P + ++ +R S K+K++ L+
Sbjct: 609 LLAEMVVNEMGQEAVGIPSAFQFRMGGCKGMLAVWPDAKGLEVHIRPSQEKFKAQFNGLE 668
Query: 291 ILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL-ELMS 349
I+ +++Y LNRQ IT+L+TLG++ K ++ + + + D + A L + +
Sbjct: 669 IIKSAQYSVATLNRQTITILTTLGVKSEPILKLAKQQIQNYEKAMDDQVAATGLLGKYID 728
Query: 350 SGENTNVLKELLMCGY--KPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLD 407
+ +K+L+ G+ K EPF+L +L +R ++ L+ + R+ I+ ++GCLD
Sbjct: 729 ENMTSLTIKDLVCWGFMDKEVQEPFVLTILNLWRIWSMKLLKEKARVIIEQSAFLLGCLD 788
Query: 408 ETGTLESGQVFVQCSASRR----REFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRV 463
ETG L + +R + N+ G+ V G +V +NP LHPGD+RV
Sbjct: 789 ETGILRGHSKATEGKTTRNIHDLPQIFLQIPNSEDGKHYCVTGVCIVGRNPSLHPGDIRV 848
Query: 464 LRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP-PLQFPPMDY 522
+ AVDVP+LHH+ + VVFP+ G R + SG DLDGD +FV W+ +LIP PPM+Y
Sbjct: 849 VEAVDVPTLHHLKNVVVFPSIGDRDVPSMLSGGDLDGDDFFVIWNPDLIPREWHHPPMNY 908
Query: 523 TPAPEKVLARDMT-IEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKL 581
KVL R + D+ +F YI ND L ++ AH+ AD A+ ++CL+LA+L
Sbjct: 909 IAPRAKVLRRGFVKVSDLRTFFVRYIQNDCLALVATAHLALADHSRVGAKDHRCLKLAEL 968
Query: 582 STIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATI 641
+ AVD+ KT A P L + +P FM + + Y S +G++Y ++D +
Sbjct: 969 HSKAVDYVKTADPAKFPPDLHPKAWPHFMNR--RCTYRSSSALGQIYDMIQDQSLNPLYG 1026
Query: 642 KSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIM 701
F + + +D + + A K KT+YD L LM + ++TE E +G ++
Sbjct: 1027 NKFDTRILTRFPLSD-------EILRKARKVKTQYDTSLRRLMSHRDVQTEFEAWTGFVL 1079
Query: 702 EMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESDSSHEDVYAK-ASAWYHVA---YH 757
+ + E I +LK+ R K E+ S H D +A +A Y V +
Sbjct: 1080 SKPRVGSDYKQHEDIGRESSALKQRYREICYK--EAGSRHYDDFAPFVAAMYKVTEEQVN 1137
Query: 758 PSYWGRYKEEGMNRTH--FLSFPWCIHDKLIEIKRG 791
+ Y++E R SFPW H + I G
Sbjct: 1138 AALAKEYEDEEHKRHSMPLTSFPWIFHWIMGRIATG 1173
>gi|310791166|gb|EFQ26695.1| RNA dependent RNA polymerase [Glomerella graminicola M1.001]
Length = 1269
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 268/802 (33%), Positives = 409/802 (50%), Gaps = 52/802 (6%)
Query: 8 LETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSG 67
LE L + ++P++ E++ ++ P ++ + K+ VTPS ++F
Sbjct: 404 LEYFADLAKRVWDPMKMFEDEDARFFF-------PNASMPYYCTTIRKITVTPSTMHFCS 456
Query: 68 PEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVLST 127
P + SNRV+R Y D FLR+ F DE LY T I+ R+
Sbjct: 457 PNVESSNRVLRKYNSYQDRFLRVQFTDE----LYK-------GKVYNNAGTEIFNRIYRV 505
Query: 128 LRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAAR 187
L+ GI IG++ +E LAF NSQ+++ +++ F T DIR+ MG+F I+NVAKYAAR
Sbjct: 506 LKQGIKIGNRVYEFLAFGNSQIRECAVYFFCPTAYTTCDDIRQWMGEFSHIRNVAKYAAR 565
Query: 188 LGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGF-TI 246
+GQ F ++RE V I+ ++E G YCFSDG+GKIS LAE+V G ++
Sbjct: 566 IGQCFSTTREIRGVTVP--RIVQAEDIERGG--YCFSDGVGKISKLLAEMVVNEMGQESV 621
Query: 247 YTPSAFQIRYGGYKGVVAVDPTS-STKLSLRKSMLKYKSESTSLDILANSKYQPCFLNRQ 305
PSAFQ R GG KG++AV P + ++ +R S K+K++ L+I+ ++Y LNRQ
Sbjct: 622 GIPSAFQFRMGGCKGMLAVWPDAKGLEVHIRPSQEKFKAQFNGLEIIRFAQYSVATLNRQ 681
Query: 306 LITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGY 365
IT+L+TLG+ + ++ V + + D + A L T++ + L+C
Sbjct: 682 TITILATLGVESEPILQLAKQQVQNYEKAMRDRVAAAGLLGRYVDENMTSLTIKDLVCWG 741
Query: 366 KPDVE---PFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCS 422
D E PF+L +L +R ++ L+ + R+ ++ ++GCLDETGTL +
Sbjct: 742 FMDTEVQEPFVLTILNLWRIWSVKLLKEKARVIVEQSAFLLGCLDETGTLRGHSKATEGR 801
Query: 423 ASRRRE-----FLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVD 477
+R E FL N G+ V G +V +NP LHPGD+RV+ AVDVP+L H+ +
Sbjct: 802 ETRNIEDIPQIFL-QIPNPDDGKFYCVTGVCIVGRNPSLHPGDIRVVEAVDVPALRHLKN 860
Query: 478 CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP-LQFPPMDYTPAPEKVLARDMT- 535
VVFP+ G R + SG DLDGD +FV W+ LIPP PPMDY + VL R
Sbjct: 861 VVVFPSIGDRDVPSMLSGGDLDGDDFFVIWNPALIPPQWHQPPMDYVASKAPVLKRGFVK 920
Query: 536 IEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAA 595
+ D+ +F Y+ ND L ++ AH+ AD AR +C++LA+L + AVD+ KT A
Sbjct: 921 VSDLRTFFVRYMQNDCLALVAVAHLAQADQSQAGARDGKCIKLAELHSKAVDYVKTADPA 980
Query: 596 TIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDT 655
P L+ + +P FM + K Y+S IG++Y ++D A K F + + T
Sbjct: 981 DFPPYLQPKRWPHFMNR--KNTYKSLSPIGQIYDMIQDQALDPLYEKKFDNRILNRFTLT 1038
Query: 656 DMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEA 715
D D + A K K +YD + LM Y +KTE E +G ++ + + E
Sbjct: 1039 D-------DLLQKARKVKRQYDTSMRRLMSYRDVKTEFEAWTGFVLSRPRVGSDYKQQED 1091
Query: 716 IIFAVKSLKKEARAWFNKKNESDSSHEDVYAK-ASAWYHVA---YHPSYWGRYKEEGMNR 771
I +LK+ R NE+ S + D +A +A Y V + + Y++E R
Sbjct: 1092 IGRESAALKQRFREIC--YNEAGSRNYDDFAPFVAAMYKVTEEQVNAALAKEYEDEEHKR 1149
Query: 772 TH--FLSFPWCIHDKLIEIKRG 791
+SFPW H + I G
Sbjct: 1150 QSMPLISFPWIFHWIMGRIATG 1171
>gi|440633273|gb|ELR03192.1| hypothetical protein GMDG_01175 [Geomyces destructans 20631-21]
Length = 1568
Score = 397 bits (1021), Expect = e-107, Method: Compositional matrix adjust.
Identities = 238/676 (35%), Positives = 369/676 (54%), Gaps = 35/676 (5%)
Query: 41 SPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKL 100
SP + Y K VTP+ +YFS P + SNRV+R + D FLR+ F DE L
Sbjct: 490 SPKSKIPTYCAYTRKATVTPTTIYFSSPTVETSNRVIRKFSAHGDRFLRVQFTDE----L 545
Query: 101 YSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASR 160
+ ++ + ++ R+ ++ RV TL+NGI IGD+ FE LAF NSQ ++N + F
Sbjct: 546 FEGRIN---ACADKIRNDQLFTRVYRTLKNGIRIGDRHFEFLAFGNSQFRENGAYFFCPT 602
Query: 161 PELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGIT 220
L+ IR+ MG F I VAKYAARLG F ++R + + +E+ EVE +G
Sbjct: 603 DGLSCVQIRDWMGKFHHINVVAKYAARLGLCFSTTRAIRNTGMTVLEL---QEVERNG-- 657
Query: 221 YCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTS-STKLSLRKSM 279
Y F+DG+GKIS L +++A ++ PS Q R GG KG++A+ P + ++ +RKS
Sbjct: 658 YNFTDGVGKISPFLMKMIATELHL-LHEPSVVQFRMGGCKGILAISPDAKGQEIHIRKSQ 716
Query: 280 LKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPL 339
K+ +E L+I+ S + LNRQ IT+LS LG+ DHVF + E ++ + DP
Sbjct: 717 TKFTAEYMGLEIIRTSSHSVATLNRQTITILSALGVEDHVFNRMLDEQLSNYMDAMNDPD 776
Query: 340 KAHEAL-ELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQN 398
KA E L + T ++ +++ G+ EPF+L +L +R+ ++ L+ + +I ++
Sbjct: 777 KALELLGRYVDDNHMTMMIASMVLDGFMRTKEPFVLSLLHLWRSWSIKLLKEKAKIIVEK 836
Query: 399 GRAMMGCLDETGTLES---------GQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVV 449
G ++GC DET TL G + + + +L + ++EG +
Sbjct: 837 GAFVLGCTDETQTLRGHSKTTNAGKGTITAEDIDKLPQIYLQVTDRKDPRHNVIIEGLCL 896
Query: 450 VAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDH 509
V +NP LHPGD+RV++AVDVP+LHH+ D VVF G R CSG DLDGD +FV WD
Sbjct: 897 VGRNPSLHPGDIRVVQAVDVPALHHLRDVVVFSQLGDRDVPGMCSGGDLDGDDFFVIWDQ 956
Query: 510 ELIP-PLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPD 568
+L+P PMDYT P L R + I DV +F Y+ +D+L I +AH+ +D
Sbjct: 957 DLLPREWNAEPMDYTAPPPVKLDRPVEINDVMSFFVKYMKSDTLPTIAHAHLALSDQLDF 1016
Query: 569 KARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDK---TCYESQRVIG 625
R +CLELA L + AVDF K+G+ A +P LR +P FMEK+ K Y S++++G
Sbjct: 1017 SVRDPKCLELAALHSKAVDFVKSGIPAEMPKYLRPRKWPHFMEKKHKPKEQIYVSKKILG 1076
Query: 626 KLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMD 685
+LY V+ + F K + +++Y D + + A + K++YD + +M
Sbjct: 1077 QLYDKVESVDFIPHYESPFDKRI-LRAYPEDRAI------LKLARQIKSQYDTAMRRIMA 1129
Query: 686 YYGIKTEAEILSGCIM 701
+ I+TE E+ + ++
Sbjct: 1130 QHDIETEFEVWTSFVL 1145
>gi|345566166|gb|EGX49112.1| hypothetical protein AOL_s00079g66 [Arthrobotrys oligospora ATCC
24927]
Length = 1475
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 269/770 (34%), Positives = 400/770 (51%), Gaps = 60/770 (7%)
Query: 51 IYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLIS 110
+ K +TP+ +Y++ P + S RV+R + + D FLR+ F DE KL+ IS
Sbjct: 605 VETRKATITPTMIYYANPVVETSYRVIRHFFNHKDRFLRVQFTDE---KLHGK-----IS 656
Query: 111 STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRE 170
+T + ++ RV L NGI IGD+ F+ LAF NSQ++ + + FA P+LT DIR+
Sbjct: 657 ATELDTSHELFTRVSKALNNGIKIGDRHFQFLAFGNSQLRQHGAYFFADGPDLTCDDIRK 716
Query: 171 SMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKI 230
MG F IK VAK++AR GQ F ++R DI IPDVE +CF+DG G I
Sbjct: 717 WMGKFEKIKVVAKFSARYGQCFSTTRAMNGFKVKDI-TIPDVERN----GFCFTDGCGTI 771
Query: 231 SAELAEIVAKNCGFTIYTP--SAFQIRYGGYKGVVAVDPT--------SSTKLSLRKSML 280
S+ A+++A +P AFQ R GG KGV+ VDP + ++ +R S
Sbjct: 772 SSSAAQLIAAEYRIPRESPLPCAFQFRLGGCKGVLVVDPNIKKVETGEAGFQVCIRPSQR 831
Query: 281 KYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLK 340
K+ ++ SL+I+ S + LNRQLI +LS LG+ D VF K + L+ + D
Sbjct: 832 KFDADHNSLEIIRYSDFSVATLNRQLIQVLSDLGLEDTVFLDKLHSQLRDLNLAMEDKEA 891
Query: 341 AHEAL-ELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNG 399
A + L + + + T + LL G+ EPF+ +L +RA ++ L+ + RI I+NG
Sbjct: 892 ARKILMKNVDANGGTIQIAGLLSDGFMTSQEPFVQCLLHLWRAWSIKMLKEKARITIENG 951
Query: 400 RAMMGCLDETGTLES--GQVFVQCSASRRRE-----------FLDNSCNNRSGELGVVEG 446
++G +DETG L+ + + SR F+ G +++G
Sbjct: 952 CFLLGVVDETGILKGHFDKEHEELKKSRANGEALRCDLLPEIFVQIPDYENKGHYKIIQG 1011
Query: 447 KVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVC 506
++A+NP LHPGD+RV+ AVD P L H+ + VVFP G +P N CSG DLDGD Y V
Sbjct: 1012 PCLLARNPSLHPGDLRVVNAVDCPDLRHLRNVVVFPQTGDKPIANMCSGGDLDGDDYIVI 1071
Query: 507 WDHELIPP-LQFPPMDYTPAPEKVLAR--DMTIEDVEEYFADYIVNDSLGVICNAHVVHA 563
WD IPP + PMDYTP P+ V A+ ++T+ED+ ++F Y+ ND+LG I NAH+ A
Sbjct: 1072 WDGTFIPPKVNESPMDYTP-PKPVEAKSGNVTLEDIRKFFVRYMKNDTLGTIANAHLATA 1130
Query: 564 DLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQ---DKTCYES 620
D P S +C+ELA L ++AVDF KTGV A + LR+ +P F EK K Y S
Sbjct: 1131 DRLPAGVFSQECVELAGLHSLAVDFPKTGVDAKMRKELRIRDWPHFFEKHIGTKKRFYVS 1190
Query: 621 QRVIGKLYRAVKDIA-PPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNR 679
++G+LY AV+ +A P K + + + D+ E ++ A K +YD
Sbjct: 1191 SEILGQLYDAVEKVAFRPEECAKDLKFDGRILTAFNDIN----EKHLNMARDLKAKYDAA 1246
Query: 680 LGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESDS 739
+ LM IKTE EI S + A + E + K ++ F+++ +
Sbjct: 1247 IRRLMAQNDIKTEFEIWSTFALSHALIGSDYKFHEDM----KEMRDGLMDRFDQEIRVEI 1302
Query: 740 SHEDVYAKA---SAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLI 786
ED Y +A Y + + R E G +SFPW +HD+L+
Sbjct: 1303 RTEDEYTLGRFVAAIYQITNE--EYTRAVENG-EPMPLISFPW-VHDELL 1348
>gi|13641451|gb|AAK31733.1| suppressor of ascus dominance [Neurospora crassa]
Length = 1638
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 263/771 (34%), Positives = 402/771 (52%), Gaps = 63/771 (8%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISS 111
+V +V +TP+++YFS P + +NRV+R + D F+R+ F DE VL I S
Sbjct: 533 WVRRVTITPTRIYFSTPCVEPTNRVIRQWKHAQDYFIRIQFTDE--------VLEGRIKS 584
Query: 112 TNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRES 171
E ++ RV L G+ +G ++ LAF NSQ+++ +MF + LT +R
Sbjct: 585 GEAE--LPLFLRVYRVLEKGVAMGPWHWKFLAFGNSQIREAGAFMFCEQSNLTGDMMRAW 642
Query: 172 MGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKIS 231
MG F IK +AKYAARLGQ F ++R + + I IPDVE DG +CF+DG+GKIS
Sbjct: 643 MGRFSHIKVIAKYAARLGQCFSTTRLVPGIPAPRIVTIPDVE--KDG--FCFTDGVGKIS 698
Query: 232 AELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP-TSSTKLSLRKSMLKYKSESTSLD 290
LA+IVA + PSA+Q R GG KGV+ P ++ +RKS K+ +E L+
Sbjct: 699 PLLAKIVAHDWSIDP-PPSAYQFRMGGCKGVLVTWPDVKGMEVHIRKSQEKFVAEFNGLE 757
Query: 291 ILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALE-LMS 349
++ S++ LNRQ+I +LS+LG+ D VF + ++ +A + D KA L+ +
Sbjct: 758 VVRCSQFSTATLNRQIIAVLSSLGVPDQVFVDMMEQQLSDFNAAMEDKQKATAILKTFID 817
Query: 350 SGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDET 409
T ++ E+L G+ EPF+ +LQ +R+ ++ L+ + R+ ++ ++GC+DET
Sbjct: 818 ENHMTPIIAEMLAYGFMGSQEPFVRTLLQLWRSWSIKTLKEKARLNVEKSAFVLGCVDET 877
Query: 410 GTLESGQVFVQ----CSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLR 465
GTL+ ++ S+ + + ++ +G V+ G VV +NP LHPGD+RV+
Sbjct: 878 GTLKGHMKVIEDWKDVSSEKLPQIFLQIPDDVNGGYRVITGTCVVGRNPSLHPGDIRVVE 937
Query: 466 AVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ-FPPMDYTP 524
AVDVP+L H+ D VVFP G R + CSG DLDGD +FV WD LIP + PPM P
Sbjct: 938 AVDVPALRHLRDVVVFPLTGDRDVPSMCSGGDLDGDDFFVIWDPLLIPKERSHPPMISEP 997
Query: 525 APEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTI 584
K LA + T+ ++ +F Y+ ++L +I +AH+ AD E + +S +CLELA L ++
Sbjct: 998 IAGKELATEPTVNNLITFFVLYMKYNNLPLIAHAHLATADAEVEGVKSPKCLELASLHSM 1057
Query: 585 AVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVK----DIA----- 635
AVD+ KTGVAA P L + +P FMEK T Y S +GKLY VK D+
Sbjct: 1058 AVDYVKTGVAAEFPRRLDPKTWPHFMEKNRHT-YHSVTALGKLYDMVKRETFDMKENYQL 1116
Query: 636 PPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEI 695
P I TK A++ DG + A + K++YD + +M I TE E+
Sbjct: 1117 PFDNRILKHTKCRALR--------DG---TLAKARRIKSQYDTAMRRVMCQLEIATEFEV 1165
Query: 696 LSGCIMEMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVA 755
+ +M + + + + +LK+ + K+ + D+ + SA Y V
Sbjct: 1166 WTAFVMSKPRVGSDYKLQDNVGRESSALKQHFKDQCKKE-----AGGDLLSFVSAMYRVT 1220
Query: 756 Y-------------HPSYWGRYKEEGMN--RTHFLSFPWCIHDKLIEIKRG 791
Y H GR + +SFPW DKL E+ R
Sbjct: 1221 YEEVRIALFEAKQPHVRPDGRLGTRKITPKTMPLVSFPWLFWDKLGELARA 1271
>gi|326481841|gb|EGE05851.1| hypothetical protein TEQG_04860 [Trichophyton equinum CBS 127.97]
Length = 1579
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 245/694 (35%), Positives = 375/694 (54%), Gaps = 70/694 (10%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISS 111
Y+ VTPS +YF+ P + SNRV+R Y + D FLR+ F DE + I+S
Sbjct: 615 YMRSATVTPSTIYFNTPTVDTSNRVIRHYIEYADRFLRVRFTDEKYEGR--------INS 666
Query: 112 TNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRES 171
T ++ RV T+ NGI +GD+ +E LAF NSQ +++ + FAS P LTAA+IR
Sbjct: 667 TYNNCMDEVFTRVKRTMTNGITVGDRHYEFLAFGNSQFREHGAYFFASLPNLTAANIRAW 726
Query: 172 MGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKIS 231
MG F DIK VAK+AARLGQ F ++R + EI EVE +G Y FSDG+G+IS
Sbjct: 727 MGHFSDIKIVAKHAARLGQCFSTTRAVTGCPVTVREID---EVERNG--YIFSDGVGRIS 781
Query: 232 AELAEIVAKNCGFTIYTPS-----AFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSES 286
LA+++ F + TPS FQ R GG S
Sbjct: 782 KFLAQMIMTE--FKLQTPSEEPPSVFQFRLGG-------------------------SIH 814
Query: 287 TSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALE 346
L+I+ S++ LNRQLI +LS LG+ D +F +K R + ++ +T KA L+
Sbjct: 815 NGLEIIRWSQFAAAHLNRQLIVVLSALGVSDEIFIQKLRLMLEDMEQAMTSETKAMSMLQ 874
Query: 347 -LMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGC 405
+ + T +L +++ G++ +PF+ +L+ +RA + L+ + ++FI G + GC
Sbjct: 875 KRVDPNQMTLILAQMVHDGFQGSCDPFVKSLLELWRAWQIKYLKEKAKVFIDQGACLFGC 934
Query: 406 LDETGTL----ESGQVFVQCSASRRREFLDNSC-----NNRSGELGVVEGKVVVAKNPCL 456
LDET TL E + ++ + R E+L N + V+EG ++A+NP L
Sbjct: 935 LDETATLKGYHEKKRPSIEATYEERLEYLPEIFVQVFDNEEEKKYRVIEGPCILARNPSL 994
Query: 457 HPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP-PL 515
HPGD+RV+RAV+VP+LHH+ D +VFP G R + CSG DLDGD Y V WD +L+P P
Sbjct: 995 HPGDIRVVRAVNVPALHHLKDVIVFPQTGDRDVPSTCSGGDLDGDDYIVIWDQDLVPLPK 1054
Query: 516 QF--PPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSN 573
+ PMDYT + + L RD+T+ D+ +F Y+ ND L I +AH+ AD D
Sbjct: 1055 DWFREPMDYTASNAQSLTRDVTVNDITSFFVTYMKNDRLPQIAHAHLAFADYLEDGVNDE 1114
Query: 574 QCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDK---TCYESQRVIGKLYRA 630
+C++LA+L + AVD++K+G+ A + L +P FMEK+ K Y+S++++G++Y
Sbjct: 1115 RCIQLAQLHSAAVDYNKSGIPANMTRDLVPRKWPHFMEKKYKPKEAQYQSKKILGQIYDI 1174
Query: 631 VKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIK 690
V+ + F + + + D+ V ED + A K K+ YD + +M + IK
Sbjct: 1175 VERVEFRPKLEAPFDERI----LNCDISVS--EDMVLAAKKLKSLYDADMRRIMAQHEIK 1228
Query: 691 TEAEILSGCIM---EMAKSFDKKRDLEAIIFAVK 721
TE E+ S ++ M+K + +L I A++
Sbjct: 1229 TEFEVWSTFVLGHANMSKDYKFHEELGQISSALR 1262
>gi|336463319|gb|EGO51559.1| suppressor of ascus dominance [Neurospora tetrasperma FGSC 2508]
gi|350297473|gb|EGZ78450.1| suppressor of ascus dominance [Neurospora tetrasperma FGSC 2509]
Length = 1633
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 264/771 (34%), Positives = 401/771 (52%), Gaps = 63/771 (8%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISS 111
+V +V +TP+++YFS P + +NRV+R + D F+R+ F DE VL I S
Sbjct: 537 WVRRVTITPTRIYFSTPCVEPTNRVIRQWRHAQDYFIRIQFTDE--------VLEGRIKS 588
Query: 112 TNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRES 171
E ++ RV L G+ +G ++ LAF NSQ+++ +MF + LT +R
Sbjct: 589 GEAE--LPLFLRVYRVLEKGVAMGPWHWKFLAFGNSQIREAGAFMFCEQSNLTCDMMRAW 646
Query: 172 MGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKIS 231
MG F IK +AKYAARLGQ F ++R + + I IPDVE DG +CF+DGIGKIS
Sbjct: 647 MGRFSHIKVIAKYAARLGQCFSTTRLVPGIPAPRIITIPDVE--KDG--FCFTDGIGKIS 702
Query: 232 AELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP-TSSTKLSLRKSMLKYKSESTSLD 290
LA+IVA + PSA+Q R GG KGV+ P ++ +RKS K+ +E L+
Sbjct: 703 PLLAKIVAHDWSIDP-PPSAYQFRMGGCKGVLVTWPDVKGMEVHIRKSQEKFVAEFNGLE 761
Query: 291 ILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALE-LMS 349
++ S++ LNRQ+I +LS+LG+ D VF + ++ +A + D KA L+ +
Sbjct: 762 VVRCSQFSTATLNRQIIAVLSSLGVPDQVFVDMMEQQLSDFNAAMEDKQKATAILKTFID 821
Query: 350 SGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDET 409
T ++ E+L G+ EPF+ +LQ +R+ ++ L+ + R+ ++ ++GC+DET
Sbjct: 822 ENHMTPIIAEMLAYGFMESQEPFVRTLLQLWRSWSIKTLKEKARLNVEKSAFVLGCVDET 881
Query: 410 GTLESGQVFVQ----CSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLR 465
GTL+ + + + + ++ +G V+ G VV +NP LHPGD+RV+
Sbjct: 882 GTLKGHMKVTEDWKDVPSEKLPQIFLQIPDDVNGGYRVITGTCVVGRNPSLHPGDIRVVE 941
Query: 466 AVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ-FPPMDYTP 524
AVDVP+L H+ D VVFP G R + CSG DLDGD +FV WD LIP + PPM P
Sbjct: 942 AVDVPALRHLRDVVVFPLAGDRDVPSMCSGGDLDGDDFFVIWDPLLIPKERSHPPMTSEP 1001
Query: 525 APEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTI 584
K LA + T+ ++ +F Y+ ++L +I +AH+ AD E + +S +CLELA L ++
Sbjct: 1002 IAGKELATEPTVNNLITFFVLYMKYNNLPLIAHAHLATADAEVEGVKSPKCLELASLHSM 1061
Query: 585 AVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVK----DIA----- 635
AVD+ KTGVAA P L + +P FMEK T Y S +GKLY VK D+
Sbjct: 1062 AVDYVKTGVAAEFPRRLDPKTWPHFMEKNRHT-YHSVTALGKLYDMVKRETFDMKENYQL 1120
Query: 636 PPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEI 695
P I TK A++ ++ +T A + K++YD + +M I TE E+
Sbjct: 1121 PFDNRILKHTKCRALR-----------DETLTKARRIKSQYDTAMRRVMCQLEITTEFEV 1169
Query: 696 LSGCIMEMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVA 755
+ +M + + + + LK+ + KNE+ D+ + SA Y V
Sbjct: 1170 WTAFVMSKPRVGSDYKLQDNVGRESSVLKQHFKD--QCKNEAGG---DLLSFVSAMYRVT 1224
Query: 756 Y-------------HPSYWGRYKEEGMN--RTHFLSFPWCIHDKLIEIKRG 791
Y H GR + +SFPW DKL E+ R
Sbjct: 1225 YEEVRIALFEAKQPHVRPDGRLGTRKITPKTMPLVSFPWLFWDKLGELARA 1275
>gi|378728086|gb|EHY54545.1| RNA-directed RNA polymerase [Exophiala dermatitidis NIH/UT8656]
Length = 1461
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 267/826 (32%), Positives = 420/826 (50%), Gaps = 69/826 (8%)
Query: 5 EHALETLFHL---RECCYEPVRWLEE-QYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTP 60
+ A + L H+ +E Y+P+ ++ +Y K V +R AL + VT
Sbjct: 414 QRAKQMLIHVDSYQERIYDPMTIFKDLRYSKPVRAR--------ALPTNCNEIYHATVTA 465
Query: 61 SKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTI 120
S V F P + ++NR++R Y D FLR+ F D+ S L +TN R +
Sbjct: 466 SGVLFHTPSVEITNRIIRKYERYNDRFLRVRFEDDSYRGK-----SRLYPATNG-RMRLL 519
Query: 121 YERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKN 180
+ERV TL++GI+I D+ +E LA+ NSQ++++ + FAS ++T IR SMG F K
Sbjct: 520 FERVRRTLKHGIIIADRHYEFLAWGNSQLREHGAYFFASTHDITPDTIRRSMGIFDSEKV 579
Query: 181 VAKYAARLGQSFGSSR--EALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIV 238
VAK AAR+GQ F ++R L + +I DV + + F+DG+GKIS A++V
Sbjct: 580 VAKRAARMGQCFSTTRAVSVLSKRAFHKRLIDDVIING----HTFTDGVGKISMLGAQLV 635
Query: 239 AKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYKSESTSLDILANSKY 297
+ PSA+Q R GG KGV+A+DP + +R S K++SES L+I+ S++
Sbjct: 636 CSSLKLRGKVPSAYQFRLGGCKGVLALDPLLPGVDIKIRPSQYKFQSESDELEIIRVSEF 695
Query: 298 QPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL-ELMSSGENTNV 356
FLNRQLI +LS LG+ D VF +KQ + + LD + D A AL + + T
Sbjct: 696 WQPFLNRQLILVLSDLGVPDEVFLQKQEDCIKALDRAMVDDTAALRALRDNVDPNLTTLS 755
Query: 357 LKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQ 416
+ ++ G++ E F+ +L+ +RA L L+ + +I + G ++G +DET L +
Sbjct: 756 IAAMIEDGFRQSNEIFVTSLLRLYRAWTLKYLKEKAKIPVPQGAFVLGVVDETNKLRGHE 815
Query: 417 VFVQCSASRRR-----EFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS 471
FV + + + +G+ +VEG ++A+NP LH GD+RV+ AVD+P+
Sbjct: 816 PFVSPGSEPPTLQDLPQIFMQYTDQHTGQRRIVEGVCIIARNPSLHRGDIRVVHAVDIPA 875
Query: 472 LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ---FPPMDYTPAPEK 528
LHH+ D VV P +G+R + CSG DLDGD Y V WD +LIPP + P Y AP+
Sbjct: 876 LHHLCDVVVMPIQGERDLPSMCSGGDLDGDDYVVIWDPDLIPPQEEWFVEPFSYA-APKP 934
Query: 529 VLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDF 588
V ++T +D+ +F DY+ ND LG I +AH+ AD + RS+ CL L L + AVD+
Sbjct: 935 VGKDEITTDDIINFFCDYMQNDFLGRIAHAHLAAADYLDEGIRSDVCLSLVNLHSKAVDY 994
Query: 589 SKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEV 648
KTGV A +P L +P FMEK+ Y+S +++G+LY AV+ +A SF + +
Sbjct: 995 PKTGVPAEMPRELERNKWPHFMEKRRAPQYKSHKILGQLYDAVERVAFEPNWEGSFDQRI 1054
Query: 649 AMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFD 708
E + + + K YD + +M + I TE E+ S ++ +K+
Sbjct: 1055 LKHQLPP-------ESVVEEVRRLKKSYDEGMRRIMAQHQINTEFEVWSTFVLHHSKAAR 1107
Query: 709 KKRDLEAIIFAVKSLKKEARAWFN--KKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKE 766
+ E I ++LK++ +++ ++ E + A A YH+ Y +
Sbjct: 1108 DFKFHEEIGQHARTLKEQ---YYDVLVEHAGGRDFEKLMPMAVAAYHITYDEFRQAQEAV 1164
Query: 767 EG----------------------MNRTHFLSFPWCIHDKLIEIKR 790
+G F+SFPW + D L I R
Sbjct: 1165 DGSVIDEVFSDAAGSRASSAGGPQAKEMPFISFPWVLQDILGRIAR 1210
>gi|116193483|ref|XP_001222554.1| hypothetical protein CHGG_06459 [Chaetomium globosum CBS 148.51]
gi|88182372|gb|EAQ89840.1| hypothetical protein CHGG_06459 [Chaetomium globosum CBS 148.51]
Length = 1572
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 268/781 (34%), Positives = 401/781 (51%), Gaps = 72/781 (9%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
V KV VTP++++FS P + +NRVVR Y D D+F+R+ F DE LD I ++
Sbjct: 490 VRKVTVTPTRIFFSTPTVETTNRVVRRYKDVQDHFIRVQFTDELLDGR--------IRAS 541
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPE---LTAADIR 169
+ +R +Y RV + GI +G ++ LAF NSQ+++N + F PE T IR
Sbjct: 542 DVDRDDELYARVCRVMTQGIRMGKWHWKFLAFGNSQIRENGAFFFCE-PEDGTTTCHSIR 600
Query: 170 ESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGK 229
E MG+F I +VAK AARLGQ F ++R + + I IPD+E D +CF+DG+GK
Sbjct: 601 EWMGNFDHISSVAKLAARLGQCFSTTRLLNCISAPRIVKIPDIESNDG---FCFTDGVGK 657
Query: 230 ISAELAEIVAKNCGFTIYT-PSAFQIRYGGYKGVVAVDPTS-STKLSLRKSMLKYKSEST 287
IS LA +V++ + I T PSAFQ R GG KGV+ P + T++ +R S K+ +E
Sbjct: 658 ISFPLASLVSE--AWKIDTRPSAFQFRMGGCKGVLVTWPDAKGTEVHVRPSQEKFSAEYN 715
Query: 288 SLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALEL 347
L+I+ S++ LNRQ I +LS LG+ D VF +A D +T+ +A E L
Sbjct: 716 GLEIIRCSQFSCPTLNRQTILILSCLGVPDDVFIDMMAGQIASYDTAMTNQDRAIELLSK 775
Query: 348 MSSGENTNVLKELL-MCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCL 406
G T + + G+ EPF+ +LQ +R+ ++ L+ + R+ + G ++GC+
Sbjct: 776 YVDGNMTTTTIATMILNGFMHTREPFVRTLLQLWRSWSIKGLKEKARLVVDQGAFLLGCV 835
Query: 407 DETGTLES----------------GQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVV 450
DETGTL Q+F+Q + R G VV G +V
Sbjct: 836 DETGTLRGHSRATEGRNGITQNDLPQIFLQVPDRKDR-----------GAYKVVTGICIV 884
Query: 451 AKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHE 510
+NP LHPGD+RV+ AVDVP L H+ D VVFP KG R + CSG DLDGD +FV WD +
Sbjct: 885 GRNPSLHPGDIRVVEAVDVPELRHLRDVVVFPLKGDRDVPSMCSGGDLDGDDFFVIWDPK 944
Query: 511 LIPP-LQFPPMDYTPAPEKV-LARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPD 568
LIPP PPM+YT APE + +++ + + +F ++ ND L +I +AH+ AD E
Sbjct: 945 LIPPEWSHPPMNYT-APEPLNESQESIVNSLAFFFVLFMKNDRLPLIAHAHLATADYEVT 1003
Query: 569 KARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLY 628
A+ +CL+LA L +IAVD+ KTG+ A L YP FMEK Y S V+GKLY
Sbjct: 1004 GAKHWKCLQLASLHSIAVDYVKTGIPARWNKKLDPRKYPHFMEKAKAKSYRSTSVLGKLY 1063
Query: 629 RAV-KDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYY 687
+ K++ K + ++ ++ + + +A K KT+YD + +M
Sbjct: 1064 DMIDKEVFDNRDNYKLPFDDRILKRFELGHPL------LKEARKIKTQYDISMRRIMGQL 1117
Query: 688 GIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAVKSLKKEAR---------AWFNKKNESD 738
I+TE EI + +M + + E + LKK+ R FN++
Sbjct: 1118 EIRTEFEIWAAFVMSKPRVGTDYKVQEKVGRESAGLKKQFRDLCLKVVEEHGFNRQEFVA 1177
Query: 739 SSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRT-----HFLSFPWCIHDKLIEIKRGKQ 793
+ ++ + + H A P G+ R +SFPW D + +I G +
Sbjct: 1178 AMYKVTWEETRIALHEARQPHVLPD-GTVGLRRVTARSMPLISFPWLFPDDMGKIALGTE 1236
Query: 794 R 794
R
Sbjct: 1237 R 1237
>gi|406868525|gb|EKD21562.1| RNA-dependent RNA polymerase 1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1494
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 246/693 (35%), Positives = 371/693 (53%), Gaps = 33/693 (4%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDN--FLRLSFVDEDLDKLYSTVLSPLI 109
Y K +TPS +YFS P + +NRV+R Y E + FLR+ F DE + + +
Sbjct: 480 YSRKATITPSTMYFSSPTVETTNRVLRHYARENRDGRFLRVQFTDELAEGRINACV---- 535
Query: 110 SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIR 169
+ +++ ++ R+ TL NGI IGD+ +E LAF NSQ ++N + F L+ DIR
Sbjct: 536 ---DNQKNDELFTRIYRTLFNGIQIGDRHYEFLAFGNSQFRENGAYFFCPTEHLSCDDIR 592
Query: 170 ESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGK 229
MG F DIK VAKYAARLGQ F ++R + DI I DVE ++G Y F+DG+GK
Sbjct: 593 GWMGHFSDIKVVAKYAARLGQCFSTTRAINGLSKPDIVKIADVE--NNG--YTFTDGVGK 648
Query: 230 ISAELAEIVAKNCGFTIYT-PSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSEST 287
IS LA++++ G T PSAFQ R GG KGV+ V P + K + +R S K+ +
Sbjct: 649 ISPFLAQMISAELGLRTNTAPSAFQFRLGGCKGVLVVWPDAKEKEVHIRMSQQKFTAVYN 708
Query: 288 SLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLD-AILTDPLKAHEALE 346
L+I+ +++ LNRQ IT+LS LG+ D VF K E +A A+ D L
Sbjct: 709 GLEIIRCARFSCATLNRQTITILSALGVPDEVFLKMLSEQLANYQTAMDNDDAAVSLLLR 768
Query: 347 LMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCL 406
+ + T + ++ G+ + +PF+L +L +R+ ++ L+ + +I I+NG ++GC+
Sbjct: 769 YIDDNQMTINIATMIRNGFMAEKDPFVLSLLHLWRSWSIKLLKEKAKIIIENGAFVLGCV 828
Query: 407 DETGTLESGQVFVQCSASRRRE------FLDNSCNNRSGELGVVEGKVVVAKNPCLHPGD 460
DET TL + + E FL + ++ G +V +NP LHPGD
Sbjct: 829 DETFTLRGYTISTAPHGEQVAEEELPQIFLQVPDKSDPNRYNIITGICLVGRNPSLHPGD 888
Query: 461 MRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP-PLQFPP 519
+RV++AVDVP+LHH+ D VVFPA G R + CSG DLDGD +FV WD L P P
Sbjct: 889 LRVVQAVDVPALHHLRDVVVFPASGDRDVPSMCSGGDLDGDDFFVIWDEALRPREWNCQP 948
Query: 520 MDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELA 579
M+Y K+ + + I D+ ++F ++ NDSL I +AH+ +D + +C+ELA
Sbjct: 949 MNYIAPKPKLHNQPVQIVDLMKFFVRFMKNDSLPAIAHAHLAQSDALQMSVKDPKCIELA 1008
Query: 580 KLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDK---TCYESQRVIGKLYRAVKDIAP 636
L + AVD+ KTG AA +P LR +P FMEK+ K Y S ++G+LY V+ +
Sbjct: 1009 SLHSKAVDYVKTGEAAQMPKHLRPRKWPHFMEKKHKPKTAQYHSNEILGQLYDKVETVDF 1068
Query: 637 PTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEIL 696
F K + +++Y D + + + K++YD + LM IKTE EI
Sbjct: 1069 KPQYEGPFDKRI-LKAYILDDAI------LKTVRQIKSKYDTAMKRLMAQQEIKTEFEIW 1121
Query: 697 SGCIMEMAKSFDKKRDLEAIIFAVKSLKKEARA 729
S ++ + + E I +LK + RA
Sbjct: 1122 STFVLSRPRVGSDYKVQEEIARLSDALKDQFRA 1154
>gi|391332207|ref|XP_003740528.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Metaseiulus
occidentalis]
Length = 1437
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 274/786 (34%), Positives = 410/786 (52%), Gaps = 95/786 (12%)
Query: 49 GLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPL 108
G Y+ ++ +TP++ F PE+ NR++R++ E D +R+ F D++L+KL + +
Sbjct: 407 GTAYIRRIFITPTRKIFRFPELHTQNRILRNF--EPDYAIRVCFRDDNLEKLTFAIFN-- 462
Query: 109 ISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA-SRPELTAAD 167
+ + + + E V L G+ IG ++++ +A S+SQ++D+ +W++A + A
Sbjct: 463 ----MKTKESFLKEVVGRHLCEGLKIGSRRYDFVAASSSQLRDHGVWVYARDQFGFEAET 518
Query: 168 IRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGIT------- 220
IR MGDF DI NVA AR+GQ F S++E +EI+P+ E+ IT
Sbjct: 519 IRGWMGDFHDINNVATRMARMGQCFSSTQET-------VEILPEEELHWRDITHFESVHP 571
Query: 221 -----YCFSDGIGKISAELAEIVAKNCGFTIYT----PSAFQIRYGGYKGVVAVDPT-SS 270
YCFSDG GKIS EL + V C + PSA QIRY G KG++++D T
Sbjct: 572 LSGRPYCFSDGCGKISQELMQQVW--CTLPHHAMELHPSALQIRYRGCKGMISLDTTLPG 629
Query: 271 TKLSLRKSMLKYKSEST-SLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVA 329
KL LR+SM+K++ S L+++ S FLNR LI +L GIR VF + Q E +
Sbjct: 630 RKLVLRESMIKFQCTSPRKLEVIKWSAPMNMFLNRSLIAILEHHGIRTDVFLRLQLEMIM 689
Query: 330 QL-DAILTDPLKAHEALELMSSGENTNV-LKELLMCGYKPDVEPFLLMMLQTFRASNLLE 387
Q+ D+++ + AL +++S T V L G++ +PF++ ML + L+
Sbjct: 690 QVADSLVCEA----SALRVLTSFVKTPVPFAGLAEVGWELVRDPFIIQMLYDLLKNALVN 745
Query: 388 LRTRTRIFI--QNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVE 445
L+ + + I GR M+G +DETG L+ GQVF+Q + + D S + + +VE
Sbjct: 746 LKVKANVAIPVNEGRNMLGVVDETGILDYGQVFIQFT---EMPYTDVS----NARVRIVE 798
Query: 446 GKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFV 505
G VV+ K PC+HPGD+R LRAVDVP L H+ DCVVFP++GK PH E SGSDLDGD Y
Sbjct: 799 GDVVITKCPCMHPGDVRRLRAVDVPQLRHIRDCVVFPSRGKAPHPFEMSGSDLDGDEYVC 858
Query: 506 CWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADL 565
W ELI P Y P V D +F +YI ND +G+I NAH+ AD
Sbjct: 859 IWSEELIFERNAMPYVYDDKPFGVNPFKHN-SDETNFFCNYIGNDIIGIISNAHLAWAD- 916
Query: 566 EPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQD-KTCYESQRVI 624
S +CL L ++ A+DF+KTG AA + + E +PDFMEK D K Y+SQ+ +
Sbjct: 917 -QAGIASEKCLALVGKASKALDFAKTGDAADLYPNEKPEKFPDFMEKGDHKHSYQSQKAL 975
Query: 625 GKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLM 684
G LYR V+ I T+ S + +EV G++ + A Y+ RL ++M
Sbjct: 976 GILYRTVRQIMAVNDTMLS-------KGNIAPLEVPGWQMFRERAQAALQRYNERLAHIM 1028
Query: 685 DYYGIKTEAEILSGCIMEMAKSFD---------KKRDLEAIIFAVKS-LKKEARAWFNKK 734
+ +G+ +E E+ SG ++ +FD +K ++ +I K L +E + F +
Sbjct: 1029 EQHGVVSEGEVFSG-VIGTVNTFDAVSTSSFRAEKANIALLIERQKCVLMEETKQQFQCE 1087
Query: 735 NESDSS----------HEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDK 784
E D + H KASAWY V Y + SFPW I
Sbjct: 1088 FEEDCALFGARTEEDRHMIRIQKASAWYMVTY------------TEDAAYFSFPWSIGHA 1135
Query: 785 LIEIKR 790
L+E KR
Sbjct: 1136 LLEAKR 1141
>gi|361125379|gb|EHK97425.1| putative RNA-dependent RNA polymerase 1 [Glarea lozoyensis 74030]
Length = 1213
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 248/705 (35%), Positives = 380/705 (53%), Gaps = 59/705 (8%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDN--FLRLSFVDEDLDKLYSTVLSPLI 109
Y K +TPS + FS P + +NRV+R Y E + FLR+ F DE + I
Sbjct: 246 YSRKATITPSTILFSSPTVETTNRVLRHYSRENHDGRFLRVQFTDESFEGK--------I 297
Query: 110 SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIR 169
+S ++R+ I+ RV TL NGI IGD+ ++ LAF NSQ ++N + F LT DIR
Sbjct: 298 NSCVKQRNDEIFTRVYRTLANGIRIGDRHYKFLAFGNSQFRENGAYFFCEDEHLTCNDIR 357
Query: 170 ESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGK 229
+ MG+F I AKYAARLGQ F ++R + + I IPD+E Y +SDG+GK
Sbjct: 358 DWMGNFTHINVPAKYAARLGQCFSTTRAINGLSAPTIVTIPDIEHG----KYTYSDGVGK 413
Query: 230 ISAELAEIVAKNCGFTI-YTPSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSEST 287
IS LA+++ G + + PSAFQ R GG KG++ P + + + +RKS K+ +
Sbjct: 414 ISPFLAQMITAELGLHVAHEPSAFQFRLGGCKGILVTWPDAKDREVHIRKSQQKFTAVYN 473
Query: 288 SLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQL-DAILTDPLKAHEALE 346
L+I+ S+Y LNRQ ITLLS LG+ D VF K +E ++ +A+ D L A+E
Sbjct: 474 GLEIIRCSQYSCATLNRQTITLLSNLGVGDGVFLKMMKEQLSGYQNAMENDNL----AIE 529
Query: 347 LMSSGENTNVLKELLMCGYKPDV-EPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGC 405
L+ + N + + D+ +PF+ +L +R+ ++ L+ + +I ++ G + GC
Sbjct: 530 LLCRFIDDNRMTINIAKMISSDIKDPFVSSLLHLWRSWSIKLLKEKAKIVVEKGAFVFGC 589
Query: 406 LDETGTLES----------------GQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVV 449
+DET TL Q+F+Q + C+ ++ V+EG +
Sbjct: 590 VDETHTLRGYKAPSTEGDAIPEEQLPQIFIQVPV--------HGCDPKNPVYNVIEGICL 641
Query: 450 VAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDH 509
V +NP LHPGD+R+ +A+DVP+LHH+ D VVFP+ G R + CSG DLDGD YFV WD
Sbjct: 642 VGRNPSLHPGDLRICQAIDVPALHHLRDVVVFPSCGDRDVPSMCSGGDLDGDDYFVIWDK 701
Query: 510 ELIP-PLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPD 568
+L P PMDY P K + ++D+ ++F Y+ NDSL I +AH+ AD P
Sbjct: 702 DLQPHEWNCSPMDYDAPPAKSQRNPVAVKDLMQHFVRYMKNDSLPQIAHAHLAQADQLPG 761
Query: 569 KARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDK---TCYESQRVIG 625
A++ +C++LA L + AVD+ K+G AA +P L+ +P FMEK+ K YES ++G
Sbjct: 762 GAKNPKCIQLAHLHSKAVDYVKSGHAAEMPKDLQPRRWPHFMEKRHKRKDQLYESTTILG 821
Query: 626 KLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFED-YITDAFKYKTEYDNRLGNLM 684
+LY V+ I F + + + +Y FED + A + K++YD + +M
Sbjct: 822 QLYNQVERINFLPQWKVPFDRRI-LTAYK-------FEDAALKKARQLKSKYDVHMRRIM 873
Query: 685 DYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAVKSLKKEARA 729
IKTE E+ S ++ + + E + + LK++ RA
Sbjct: 874 AQQEIKTEFEVWSTFVLSKPRVGSDYKLGEEMGRISEGLKEQFRA 918
>gi|342879234|gb|EGU80489.1| hypothetical protein FOXB_08949 [Fusarium oxysporum Fo5176]
Length = 1391
Score = 390 bits (1003), Expect = e-105, Method: Compositional matrix adjust.
Identities = 240/677 (35%), Positives = 382/677 (56%), Gaps = 70/677 (10%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
+ K ++TP+ + ++ P + +SNRV+R Y D FL++ F +E ++K V
Sbjct: 476 IRKAVITPTTIRYTTPTVEMSNRVMRRYKHYEDRFLKIQFTEE-MEKGRIAV-------- 526
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESM 172
N++++ IY+RVL ++ G+ IGD+ +E LAF NSQ++ N + F L+ DIR M
Sbjct: 527 NKDQNDEIYKRVLRSMYKGVRIGDRFYEFLAFGNSQLRVNGAYFFCPTEHLSCDDIRRWM 586
Query: 173 GDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISA 232
G F IK VAKYAARLGQ F ++RE + + + IPD+E YCF+DGIGKIS+
Sbjct: 587 GQFSHIKVVAKYAARLGQCFSTTRELHAISAPATQQIPDIERNG----YCFTDGIGKISS 642
Query: 233 ELAEIVAKNCGFTIYT-PSAFQIRYGGYKGVVAVDP--TSSTKLSLRKSMLKYKSESTSL 289
LA++++++ + PSAFQ R GG KGV+A+ P T ++ +R+S K++S+S L
Sbjct: 643 FLAQLISEDMILDVVARPSAFQFRMGGCKGVLAIWPNDTKVMEVHIRESQKKFESDSKGL 702
Query: 290 DILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHE------ 343
+I+ ++ LNRQ IT+L LG+ +A +L L+++E
Sbjct: 703 EIIRSAAMATATLNRQTITILECLGV-----------PIASFTNLLDHQLRSYELAMEDN 751
Query: 344 --ALELMSSGENTNVLKELLMCGYKPD--VEPFLLMMLQTFRASNLLELRTRTRIFIQNG 399
A+++++ + N + +LL G+K D EPF++ +L+ +R+ +L L+ + RI +Q
Sbjct: 752 DVAIDMLTKFVDENNISDLLRAGFKTDDLQEPFVVNVLKLWRSWSLKLLKEKARIQVQKS 811
Query: 400 RAMMGCLDETGTLESGQVFVQCSASRRRE-----FLDNSCNNRSGELGVVEGKVVVAKNP 454
++GC+DETGTL + S + + F+ S + V+ G ++ +NP
Sbjct: 812 AFVLGCVDETGTLRGHSSETEGSEDKATDRLPQIFIQLSDATHYNKTQVISGVCIIGRNP 871
Query: 455 CLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP- 513
LHPGD+RV+ AVD P+LHH+ D VVFP+ G +P N SG DLDGD +FV W+ LIP
Sbjct: 872 SLHPGDIRVVEAVDCPALHHLRDVVVFPSTGDQPVPNMLSGGDLDGDDFFVIWEPTLIPR 931
Query: 514 PLQFPPMDYTPAPEKV-LARDMTIEDVEEYFADYIVNDSLGVICNAHVVHA-DLEPDKAR 571
+PPM+Y AP+ + L RD+T++D+ +F Y+ ND L +I +H+ + DL P
Sbjct: 932 RWNYPPMNYL-APKPIELDRDVTVDDLRNFFVKYLKNDKLPLIATSHLAFSDDLGP---M 987
Query: 572 SNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAV 631
S +CLELA+L + AVD+ KTG A + + +P FMEK K Y S++ +G ++ V
Sbjct: 988 SPKCLELAELHSKAVDYPKTGDPAVLRRDQQPRKWPHFMEK--KNSYTSRKALGVIFDKV 1045
Query: 632 KDIAPPTATIKSFTKEVAMQS-YDTDME---VDGFE---DYITDAFKYKTEYDNRLGNLM 684
K K+V +D+ + + FE D + A K KT+YD + L+
Sbjct: 1046 KG------------KQVKFDPIWDSPFDQRIIKKFELNRDTLKSARKIKTQYDTSVRRLL 1093
Query: 685 DYYGIKTEAEILSGCIM 701
+ +KTE E+ +G M
Sbjct: 1094 SQHALKTEFELWTGFAM 1110
>gi|336264581|ref|XP_003347067.1| hypothetical protein SMAC_05269 [Sordaria macrospora k-hell]
gi|380093080|emb|CCC09317.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1703
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 259/769 (33%), Positives = 402/769 (52%), Gaps = 63/769 (8%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
V +V +TP+++YFS P + +NRV+R + D F+R+ F DE VL I S
Sbjct: 534 VRRVTITPTRIYFSTPYVEPTNRVIRQWRFAQDYFIRIQFTDE--------VLEGRIRSG 585
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESM 172
E ++ R L+ GI +G ++ LAF NSQ+++ +MF + +LT +R M
Sbjct: 586 EAE--LPLFLRAYRVLQEGIAMGLWHWKFLAFGNSQIREAGAYMFCEQSDLTCDMMRSWM 643
Query: 173 GDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISA 232
G F IK +AKYAARLGQ F ++R + + I IPDVE DG +CF+DG+GKIS
Sbjct: 644 GRFSHIKVIAKYAARLGQCFSTTRLVPGIPAPRIVTIPDVE--KDG--FCFTDGVGKISP 699
Query: 233 ELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP-TSSTKLSLRKSMLKYKSESTSLDI 291
LA+I+ PSAFQ R GG KGV+ P ++ +RKS K+ +E L++
Sbjct: 700 LLAKIITHEWSLD-RLPSAFQFRMGGCKGVLVTWPDVKGMEVHIRKSQEKFVAEFNGLEV 758
Query: 292 LANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL-ELMSS 350
+ S + LNRQ I +LS+LG+ D VF + ++ +A + D KA E L + +
Sbjct: 759 IKCSAFATATLNRQTIAVLSSLGVPDQVFVDMMEKQLSDYNAAMVDKRKATEYLRKYVDE 818
Query: 351 GENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETG 410
T ++ ++L G+ EPF+ +LQ +R+ ++ L+ + R+ ++ ++GC+DE+
Sbjct: 819 NHITPIIAQMLSYGFMESQEPFVRTLLQLWRSWSIKTLKEKARLSVEKSAFVLGCVDESR 878
Query: 411 TLESGQVFVQ----CSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRA 466
TL+ ++ + + + +N + V+ G VV +NP LHPGD+RV+ A
Sbjct: 879 TLKGHMKVIEGWKDVPSEKLPQIFLQIPDNVNDGYKVITGTCVVGRNPSLHPGDIRVVEA 938
Query: 467 VDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP-PLQFPPMDYTPA 525
VDVP+L H+ D VVFP G R + CSG DLDGD +FV WD L+P PPM P
Sbjct: 939 VDVPALRHIRDVVVFPLTGDRDVPSMCSGGDLDGDDFFVIWDPLLVPNERSHPPMINEPV 998
Query: 526 PEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIA 585
K LA + T+ ++ +F Y+ +++L +I +AH+ AD E D +S++CLELA L ++A
Sbjct: 999 VGKELANEPTVNNLVTFFVLYMKHNNLPLIAHAHMATADAEMDGVKSSKCLELAILHSMA 1058
Query: 586 VDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVK----DIA-----P 636
VD+ KTGV A P L + +P FMEK+ K Y S +GKLY VK D+ P
Sbjct: 1059 VDYVKTGVPAVFPKRLDPKSWPHFMEKK-KRDYHSATALGKLYDMVKRETFDMKENYELP 1117
Query: 637 PTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEIL 696
+ I TK A++ ++ +T A + K++YD + +M I TE E+
Sbjct: 1118 FDSRILKHTKCRALR-----------DETLTKARRIKSQYDTAMRRVMCQLEIATEFEVW 1166
Query: 697 SGCIMEMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAY 756
+ +M + + + E + +LK+ R K+ + D+ + SA Y V Y
Sbjct: 1167 TAFVMSKPRVGSEYKLQENVGRESSALKQHFRDQCRKE-----AGGDLLSFVSAMYRVTY 1221
Query: 757 -------HPSYWGRYKEEGMNRTH--------FLSFPWCIHDKLIEIKR 790
H + + +G T +SFPW DKL E+ R
Sbjct: 1222 EEVRIALHEAKQPHIRPDGSLGTRRITPKTMPLVSFPWLFWDKLGELAR 1270
>gi|408392756|gb|EKJ72076.1| hypothetical protein FPSE_07701 [Fusarium pseudograminearum CS3096]
Length = 1206
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 242/662 (36%), Positives = 368/662 (55%), Gaps = 44/662 (6%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
V + ++TP+ V +S P I +SNRV+R + D FLR+ F +E ++K TV
Sbjct: 397 VRRAVITPTTVRYSTPNIEVSNRVMRRFRHIQDRFLRIQFTEE-MEKGKITV-------- 447
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESM 172
N++++ IY+R+L T+ GI IGD+ +E LAF NSQ++ N + F ++ DIR+ M
Sbjct: 448 NKDQNDEIYKRILRTMYEGIRIGDRLYEFLAFGNSQLRSNGAYFFCPTEYVSCDDIRQWM 507
Query: 173 GDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISA 232
G F IK VAKYAARLGQ F ++R+ + S + IPDVE YCF+DG+GKIS
Sbjct: 508 GQFSHIKVVAKYAARLGQCFSTTRDVRGISSPNCLQIPDVERN----GYCFTDGVGKISV 563
Query: 233 ELAEIVAKNCGFTIYT-PSAFQIRYGGYKGVVAVDP--TSSTKLSLRKSMLKYKSESTSL 289
LA++V ++ I PSAFQ R GG KGV+AV P T++ +R+S K++S+S L
Sbjct: 564 FLAKLVGEDMAIDICADPSAFQFRMGGCKGVLAVWPEDAKGTEVHVRESQKKFESDSKGL 623
Query: 290 DILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALE-LM 348
+I+ ++Y LN Q I +L LG+ F + + Q + + D A E LE
Sbjct: 624 EIIRWARYATATLNLQTILILECLGVPIRSFTTLLDQQLRQYELAMRDNDVAIEMLERFR 683
Query: 349 SSGENTNVLKELLMCGYKPDV--EPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCL 406
N + L +LL +K + EPF++ ++ +++ ++ L+ + RI + ++GC+
Sbjct: 684 DEQHNHSCLADLLRADFKTETFQEPFVVNVINLWQSWSIKSLKEKARIHVPKSAFVLGCV 743
Query: 407 DETGTLESGQVFVQCSASRRRE-------FLDNSCNNRSGELGVVEGKVVVAKNPCLHPG 459
DETGTL G F S+ ++ FL S + + ++ G VV +NP LHPG
Sbjct: 744 DETGTLR-GHSF-DTEGSKEKDVHRLPQIFLQISDPKKYNKTSIIRGPCVVGRNPSLHPG 801
Query: 460 DMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP-LQFP 518
D+RV+ AVD +LHH+ D VVFP+ G RP N SG DLDGD +FV WD L+P P
Sbjct: 802 DIRVVEAVDCKALHHLTDVVVFPSTGDRPVPNMLSGGDLDGDDFFVIWDPSLMPSEWNHP 861
Query: 519 PMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHAD-LEPDKARSNQCLE 577
PM+Y+P L RD+ ++D+ +F Y+ ND L +I +H AD L P +S++CLE
Sbjct: 862 PMNYSPLDPIELKRDVNVDDLRNFFVKYLKNDKLPLIAMSHRAFADELGP---KSSKCLE 918
Query: 578 LAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAV--KDIA 635
LA+L + AVD+ KTG A + + +P +MEK + Y S++ +G +Y V K +
Sbjct: 919 LAELHSKAVDYPKTGNPAVLRQDQQPRKWPHWMEK--RYSYHSRKALGVIYDKVAHKKVE 976
Query: 636 PPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEI 695
SF K + + ++ D E G A K K EYD + ++ +KTE E+
Sbjct: 977 FNPVWDSSFDKRIT-KRFELDNETLGV------ARKIKAEYDTAVRRVLSQNALKTEFEL 1029
Query: 696 LS 697
+
Sbjct: 1030 FT 1031
>gi|46128677|ref|XP_388892.1| hypothetical protein FG08716.1 [Gibberella zeae PH-1]
Length = 1295
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 241/662 (36%), Positives = 368/662 (55%), Gaps = 44/662 (6%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
V + ++TP+ V +S P I +SNRV+R + D FLR+ F +E ++K TV
Sbjct: 486 VRRAVITPTTVRYSTPNIEVSNRVMRRFRHIQDRFLRIQFTEE-MEKGKITV-------- 536
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESM 172
N++++ IY+R+L T+ GI IGD+ +E LAF NSQ++ N + F ++ DIR+ M
Sbjct: 537 NKDQNDEIYKRILRTMYEGIRIGDRLYEFLAFGNSQLRSNGAYFFCPTEYVSCDDIRQWM 596
Query: 173 GDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISA 232
G F IK VAKYAARLGQ F ++R+ + S + IPDVE YCF+DG+GKIS
Sbjct: 597 GQFSHIKVVAKYAARLGQCFSTTRDVRGISSPNCLQIPDVERNG----YCFTDGVGKISV 652
Query: 233 ELAEIVAKNCGFTIYT-PSAFQIRYGGYKGVVAVDP--TSSTKLSLRKSMLKYKSESTSL 289
LA++V ++ I PSAFQ R GG KGV+AV P T++ +R+S K++S+S L
Sbjct: 653 FLAKLVGEDMAIDICADPSAFQFRMGGCKGVLAVWPEDAKGTEVHVRESQKKFESDSKGL 712
Query: 290 DILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALE-LM 348
+I+ ++Y LN Q I +L LG+ F + + Q + + D A E LE
Sbjct: 713 EIIRWARYATATLNLQTILILECLGVPIKSFTTLLDQQLKQYELAMRDNDVAIEMLERFR 772
Query: 349 SSGENTNVLKELLMCGYKPDV--EPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCL 406
N + L +LL +K + EPF++ ++ +++ ++ L+ + RI + ++GC+
Sbjct: 773 DEQHNHSCLADLLRADFKTETFQEPFVVNVINLWQSWSIKSLKEKARIHVPKSAFVLGCV 832
Query: 407 DETGTLESGQVFVQCSASRRRE-------FLDNSCNNRSGELGVVEGKVVVAKNPCLHPG 459
DETGTL G F S+ ++ FL S + + ++ G VV +NP LHPG
Sbjct: 833 DETGTLR-GHSF-DTEGSKEKDVHRLPQIFLQISDPKKYNKTSIIRGPCVVGRNPSLHPG 890
Query: 460 DMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP-LQFP 518
D+RV+ AVD +LHH+ D VVFP+ G RP N SG DLDGD +FV WD L+P P
Sbjct: 891 DIRVVEAVDCKALHHLTDVVVFPSTGDRPVPNMLSGGDLDGDDFFVIWDPSLMPSEWNHP 950
Query: 519 PMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHAD-LEPDKARSNQCLE 577
PM+Y+P L RD+ ++D+ +F Y+ ND L +I +H AD L P +S++CLE
Sbjct: 951 PMNYSPLDPIELKRDVNVDDLRNFFVKYLKNDKLPLIAMSHRAFADELGP---KSSKCLE 1007
Query: 578 LAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAV--KDIA 635
LA+L + AVD+ KTG A + + +P +MEK + Y S++ +G +Y V K +
Sbjct: 1008 LAELHSKAVDYPKTGNPAVLRQDQQPRKWPHWMEK--RHSYHSRKALGVIYDKVAHKKVE 1065
Query: 636 PPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEI 695
+ F K + + ++ D E G A K K EYD + ++ +KTE E+
Sbjct: 1066 FNPVWDRPFDKRIT-KRFELDNETLGV------ARKIKAEYDTAVRRILSQNSLKTEFEL 1118
Query: 696 LS 697
+
Sbjct: 1119 FT 1120
>gi|302918417|ref|XP_003052653.1| hypothetical protein NECHADRAFT_91974 [Nectria haematococca mpVI
77-13-4]
gi|256733593|gb|EEU46940.1| hypothetical protein NECHADRAFT_91974 [Nectria haematococca mpVI
77-13-4]
Length = 1250
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 246/680 (36%), Positives = 370/680 (54%), Gaps = 47/680 (6%)
Query: 41 SPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKL 100
SP + V KV+VTP+ + F+ P + +SNRV+R Y D FLR+ FV+E L
Sbjct: 408 SPIARIPQYCALVRKVVVTPTTIRFNSPAVEMSNRVMRQYKHIQDRFLRIQFVEE----L 463
Query: 101 YSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASR 160
+T ++ N++++ IY+RVL T+ GI IGD+ +E LAF +SQ++ N + F
Sbjct: 464 ENTRIA-----INKDQNDEIYKRVLRTMYQGIRIGDRVYEFLAFGSSQLRVNGAYFFCPT 518
Query: 161 PELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGIT 220
+ DIR+ MG F IK VAKYAARLGQ F ++RE + S I IPD+E
Sbjct: 519 EHTSCDDIRKWMGQFSHIKVVAKYAARLGQCFSTTREVRGISSPAIREIPDIERNG---- 574
Query: 221 YCFSDGIGKISAELAEIVAKNCGFTIY-TPSAFQIRYGGYKGVVAVDPTS-STKLSLRKS 278
+CFSDG+GKIS +A++V ++ I+ PSAFQ R GG KGV+ V P + ++ +R+S
Sbjct: 575 HCFSDGVGKISPFVAQLVNEDMALDIFDKPSAFQFRMGGCKGVLTVWPDAKGMEVHVRES 634
Query: 279 MLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDP 338
K++++S L+I+ + + LNRQ I +L +LG+ F + + + + D
Sbjct: 635 QKKFEADSKGLEIIRCAGFATATLNRQTIIILESLGVPIKAFTDLLDQQLGSYEQAMQDN 694
Query: 339 LKAHEALELMSSGENTN-VLKELLMCGYKPD--VEPFLLMMLQTFRASNLLELRTRTRIF 395
A E L TN V+ ELL +K D EPF++ +L +RA +L L+ + RI
Sbjct: 695 GVAIEMLAKFVDEHQTNLVIAELLKAEFKTDELREPFVINVLSLWRAWSLKILKEKARIQ 754
Query: 396 IQNGRAMMGCLDETGTLESGQVFVQCSASR-----RREFLDNSCNNRSGELGVVEGKVVV 450
++ ++GC+DET TL + S + + FL + + + +++G +V
Sbjct: 755 VEKSAFVLGCVDETETLRGHSKDSEGSKPKDVNMLPQIFLQITDSRNYNKTHIIQGVCIV 814
Query: 451 AKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHE 510
+NP LHPGD+RV+ AVD L H+ D VVFPA G RP N SG DLDGD +FV W+
Sbjct: 815 GRNPSLHPGDIRVVEAVDCSKLRHIKDVVVFPATGDRPVPNMLSGGDLDGDDFFVIWEPS 874
Query: 511 LIPP-LQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHAD-LEPD 568
LIP + PMDY K L RD+ ++D+ +F Y+ ND L +I +H+ AD L P
Sbjct: 875 LIPKTWNYSPMDYAAPKPKELDRDVNVDDLRNFFVKYLKNDKLPLIATSHLGFADQLGP- 933
Query: 569 KARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLY 628
S +CLELA+L + AVD+ KTG AT+ + +P FMEK K Y S + +G +Y
Sbjct: 934 --MSPKCLELAELHSKAVDYPKTGEPATLRRDQQPRKWPHFMEK--KQFYHSDKALGVIY 989
Query: 629 RAVKDIAPPTATIKSFTK-------EVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLG 681
V + A + F + + Y D E+ + A K K++YD +
Sbjct: 990 DKVVN----KAKVIQFNPIWDSPFDDRITKKYKLDNEL------LKAARKVKSQYDTAVR 1039
Query: 682 NLMDYYGIKTEAEILSGCIM 701
L+ + +KTE E+ +G M
Sbjct: 1040 RLLSQHDLKTEFELWTGFAM 1059
>gi|171685025|ref|XP_001907454.1| hypothetical protein [Podospora anserina S mat+]
gi|170942473|emb|CAP68125.1| unnamed protein product [Podospora anserina S mat+]
Length = 1493
Score = 381 bits (978), Expect = e-102, Method: Compositional matrix adjust.
Identities = 259/782 (33%), Positives = 406/782 (51%), Gaps = 79/782 (10%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
V KV+VTP+K+ FS P + +NRV+R Y + F+R+ F DE L+ + +
Sbjct: 529 VRKVMVTPTKIIFSTPTVETTNRVIRHYWTFQNYFMRIQFTDEQLEGR--------VRGS 580
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAAD----- 167
+ +R +Y RV L GI +G ++ LAF NSQV++N +MF +P+ A D
Sbjct: 581 DADRDDDLYTRVYRVLFWGIRMGKWHWKFLAFGNSQVRENGAFMFC-QPDSHAGDMVPSC 639
Query: 168 --IRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVED----DGITY 221
IR MG+F IK VAKYAARLGQ F ++R L + P VE+ED DG +
Sbjct: 640 DDIRRWMGNFEHIKVVAKYAARLGQCFSTTR-VLRGGT----FPPIVEIEDINTADG-KH 693
Query: 222 CFSDGIGKISAELAEIVAKNCGFTIYTP-SAFQIRYGGYKGV-VAVDPTSSTKLSLRKSM 279
CF+DG+G+IS L+ +VA++ + +Y P SA+Q R GG KGV V T++ +R S
Sbjct: 694 CFTDGVGRISPLLSRLVAED--WQVYPPPSAYQFRMGGCKGVLVGWKHAKGTEVHIRPSQ 751
Query: 280 LKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPL 339
K+ + L+++ S + LNRQ IT+LS+LG+ DHVF RE +++ D +TD
Sbjct: 752 EKFSAAYNGLEVVRCSSFSCATLNRQTITILSSLGVPDHVFVDLMREQLSRFDRAMTD-- 809
Query: 340 KAHEALELMSSGENTNV----LKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIF 395
A+++++S + N+ + ++ G+ EPF+ +LQ +RA +L L+ + R+
Sbjct: 810 -GKSAVDMLTSFVDENMTTVSIARMIKSGFMDSNEPFVKTVLQLWRAWSLKTLKEKARLA 868
Query: 396 IQNGRAMMGCLDETGTLESGQVFVQCSASRRRE-----FLDNSCNNRSGELGVVEGKVVV 450
++ G ++GC+DETGTL + RR+ FL + + G ++
Sbjct: 869 VEKGAFVLGCVDETGTLRGHSKATEGRQRIRRDQLPQIFLQIPDRDDPSGYKAIAGLCII 928
Query: 451 AKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHE 510
+NP LHPGD+RV+ AVDVP+L H+ D VVFP +G R + CSG DLDGD +FV WD +
Sbjct: 929 GRNPSLHPGDIRVVEAVDVPALRHLRDVVVFPLEGDRDVPSMCSGGDLDGDDFFVIWDEK 988
Query: 511 LIPP-LQFPPMDYTPAPEKVL-ARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPD 568
L+P PPMD+TP P ++ +E + +F ++ ND L I +AH+ AD EP
Sbjct: 989 LLPTEWSHPPMDHTPQPPVTSDSKKSIMESLASFFVLFMKNDRLPFIAHAHLATADAEPQ 1048
Query: 569 KARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLY 628
A+S +CL+LA+++ + ++SK L +P FME+Q K Y S+ +G+LY
Sbjct: 1049 GAKSEKCLKLAEMTGVPAEWSKK---------LNPRSWPHFMERQ-KGSYHSKTALGQLY 1098
Query: 629 RAV--KDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDY 686
V +D F + + + Y D EV + A K KT+YD + ++
Sbjct: 1099 DMVHTQDFDSTKNYQSPFDRRI-LSRYMLDQEV------LKTARKIKTQYDIAMRRILGM 1151
Query: 687 YGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESDSSHEDVYA 746
I+TE E+ +G +M + + E + +L+++ RA K D E +
Sbjct: 1152 LEIRTEFEVWTGFVMFKPRVGSDYKVQEKVGREAAALREQFRA-ECIKAAGDRHFEKLGP 1210
Query: 747 KASAWYHVAYHPS----YWGRYKEEGMNRT-----------HFLSFPWCIHDKLIEIKRG 791
+A Y V Y R + + T ++FPW D+L I G
Sbjct: 1211 FVAAMYQVTCEEMRIALYQARQPQVLADGTINARRITARSMPLVTFPWLFPDELGRIVNG 1270
Query: 792 KQ 793
++
Sbjct: 1271 RE 1272
>gi|358393612|gb|EHK43013.1| hypothetical protein TRIATDRAFT_225118 [Trichoderma atroviride IMI
206040]
Length = 1272
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 245/737 (33%), Positives = 387/737 (52%), Gaps = 62/737 (8%)
Query: 5 EHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTS--PAVALDDGLIYVNKVLVTPSK 62
+H LE L E + P+ + +RR + PA + + K VTP+
Sbjct: 405 KHRLEVLVDQEEVVHNPMD---------IFARRTMAPYRPATRIPHYCVLARKATVTPTS 455
Query: 63 VYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYE 122
+ S P + SNRV+R + D FLR+ FVDE + ++S N+E I++
Sbjct: 456 LLLSSPAVETSNRVLRYFNQAQDRFLRVQFVDEAESGRMT------MNSHNKEE---IWK 506
Query: 123 RVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVA 182
++L TL GI IGD+++E LAF +SQ++ + + F ++ DIR+ MG I+ VA
Sbjct: 507 KLLRTLYEGIQIGDRRYEFLAFGSSQLRQSGAYFFCPTDHISCQDIRQWMGQVSHIRIVA 566
Query: 183 KYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNC 242
KYAARLGQ F ++RE V D+ I D+E YCF+DG+G IS +A ++ +
Sbjct: 567 KYAARLGQCFSTTREMKGVPIPDVRPIADIERNG----YCFTDGVGMISGFMARMIVEEL 622
Query: 243 GFTIYT-PSAFQIRYGGYKGVVAVDPTSS-TKLSLRKSMLKYKSESTSLDILANSKYQPC 300
++ PSAFQ R GG KGV+ V P + +++ +R+S K+K+++ +L+I+ +KY
Sbjct: 623 TLEVFNDPSAFQFRMGGCKGVLVVWPQAKKSEVYIRESQEKFKADAKNLEIIKCAKYTSA 682
Query: 301 FLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALE-LMSSGENTNVLKE 359
LNRQ IT+L LG+ F + ++ + D A L+ + ++T VL E
Sbjct: 683 TLNRQTITILEHLGVPKKAFMDILEKQISLYEEAAKDNRVAVGMLKKCVDENQSTLVLAE 742
Query: 360 LLMCGYKPD--VEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQV 417
LL G+K EPF++ +L +R+ +L L+ + RI I+ ++GC+DETGTL
Sbjct: 743 LLQAGFKTKNCQEPFVVNLLNLWRSWSLKLLKEKARIAIEQSAFVLGCVDETGTLRGHSN 802
Query: 418 FVQCSASR-----RREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSL 472
+ ++ + + FL S + V++G VV +NP LHPGD+RV+ AVD+P L
Sbjct: 803 ATEGTSDKDVNKLPQIFLQVSDSKIYDTTKVIKGICVVGRNPSLHPGDIRVVEAVDIPEL 862
Query: 473 HHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP-PLQFPPMDYTPAPEKVLA 531
HH+ D VVFP+ G RP N SG DLDGD +FV W+ LIP P M+Y+ P L
Sbjct: 863 HHLKDVVVFPSTGDRPVPNMLSGGDLDGDDFFVIWEPSLIPEKWNHPAMNYSSPPPPKLD 922
Query: 532 RDMTIEDVEEYFADYIVNDSLGVICNAHVVHAD-LEPDKARSNQCLELAKLSTIAVDFSK 590
RD+ + D+ ++F +Y+ ND L +I AH+ AD +P S CL LA+L + AVD+ K
Sbjct: 923 RDVNVNDLRDFFVNYMKNDVLPLIATAHLALADRFDP---ASPICLRLAELHSKAVDYPK 979
Query: 591 TGVAATIPSGL-RVEIYPDFMEKQDKTCYESQRVIGKLY-RAVKDIAPPTATIKSFTKEV 648
TG A + + +P FMEKQ + Y+S R +G +Y R +K ++ +
Sbjct: 980 TGDPAEFNHDMYNPQSWPHFMEKQQR--YKSARALGAIYDRVIKQTIEFRPDWENAFDKR 1037
Query: 649 AMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIM------- 701
+ Y D + + A + K +YD + ++ ++ + TE E+ + M
Sbjct: 1038 ILNRYQLDTGM------LKSARQIKGQYDAAVRRILSHHNLGTEFELYTSWAMTKPAIGS 1091
Query: 702 ------EMAKSFDKKRD 712
E+ + FD +D
Sbjct: 1092 DYKRQEELGREFDAIKD 1108
>gi|425783248|gb|EKV21105.1| RNA-directed RNA polymerase (Sad-1), putative [Penicillium digitatum
Pd1]
Length = 1347
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 253/781 (32%), Positives = 404/781 (51%), Gaps = 62/781 (7%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEI--DNFLRLSFVDEDLDKLYSTVLSPLI 109
+++ VTP+ +Y++ P + +SNRVVR + + FLR+ F DE + + L
Sbjct: 460 FMHTARVTPTTIYYNTPTVDISNRVVREWSTKSAPGRFLRVRFTDERTEGRINASLG--- 516
Query: 110 SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIR 169
+N+E IY RV TL NGI IGD+ +E LAF NSQ +++ + FA ++AA IR
Sbjct: 517 -DSNDE----IYTRVKRTLANGISIGDRHYEFLAFGNSQFREHGAYFFAPDAGVSAATIR 571
Query: 170 ESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGK 229
MG F I+NVAKYAARLGQ F ++R S +++ +V +G T FSDG+GK
Sbjct: 572 AWMGQFNHIRNVAKYAARLGQCFSTTRA---FTGSSVQVATCNDVVRNGFT--FSDGVGK 626
Query: 230 ISAELAEIVAKNCGFTIYT---PSAFQIRYGGYKGVVAVDPTS-STKLSLRKSMLKYKSE 285
+S LA++V T PSAFQ R GG KG++ V P ++ +R S K+++
Sbjct: 627 VSKFLAQMVTSQHNIKTLTGESPSAFQFRLGGAKGMLVVSPDPMPQEVHIRPSQQKFETT 686
Query: 286 STSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL 345
L+I+ S+Y LNRQLI +LS LGI D VF K + ++ + KA L
Sbjct: 687 QAGLEIIRWSQYSLATLNRQLILVLSALGIPDKVFHSKLNSMLGSFHRVMCNDSKAINLL 746
Query: 346 E-LMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMG 404
+ + + T +L +++ G++ + EPF ML+ +++ +L L+ + +I I G ++G
Sbjct: 747 QKYIDPNQTTLILAQMVSDGFRQNEEPFANTMLELWKSWHLKHLKEKAKIAIDQGANLLG 806
Query: 405 CLDETGTLES---------GQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPC 455
+DETG L+ G + Q A+ F+ +GE V+EG ++A+NP
Sbjct: 807 VMDETGVLKGYFKNTLPRRGASYAQKLAALPEIFVQICRLEGNGEYEVIEGLCILARNPS 866
Query: 456 LHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPL 515
LHPGD+RV+RAV+ P L + D VV P G + + CSG DLDGD Y + WD +LIP
Sbjct: 867 LHPGDIRVVRAVNRPELKGLRDVVVLPQTGDQDIASMCSGGDLDGDDYLIIWDPDLIPTR 926
Query: 516 QFPP-MDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQ 574
F MDY + L D+T++++ +F Y+ ND L I +AH+ AD P +
Sbjct: 927 WFVECMDYKGSKAPDLDHDVTVDEITSFFVTYMKNDCLPRIAHAHLAWADRLPRGVWEEK 986
Query: 575 CLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDK---TCYESQRVIGKLYRAV 631
C+ LA+L + AVD++K+G A + L + +P FMEK+ K + Y+S +++G+LY AV
Sbjct: 987 CIRLAQLHSDAVDYNKSGAHARMARSLDPKFWPHFMEKRFKRPSSIYKSTKILGQLYDAV 1046
Query: 632 KDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKT 691
+ P + K + ++ + E YI A + K E+D + +M Y I T
Sbjct: 1047 --VTP--NFVPKLGKPFDSRILESPL-ASASETYIEYARELKAEFDMNMRQIMAQYEINT 1101
Query: 692 EAEILSGCIME---MAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESDSSH-EDVYAK 747
E E+ S ++ + + + + DL I+ ++ R + ++ + H ++ A
Sbjct: 1102 EFEVWSTFVLRHGFVIRDYKMQEDLGRIVGTLR------RGFRHQCYDKVGRHGGNISAL 1155
Query: 748 ASAWYHVAYH--PSYWGRYKEEGMNRTH------------FLSFPWCIHDKLIEIKRGKQ 793
A Y V + ++E + R +SFPW D L ++ G+
Sbjct: 1156 VIAMYRVTQEQVAAALEAQRKEALQREDLSVVEVSSTELPLISFPWIFPDVLGDVATGRA 1215
Query: 794 R 794
R
Sbjct: 1216 R 1216
>gi|452837097|gb|EME39040.1| hypothetical protein DOTSEDRAFT_110589, partial [Dothistroma
septosporum NZE10]
Length = 1155
Score = 377 bits (968), Expect = e-101, Method: Compositional matrix adjust.
Identities = 260/757 (34%), Positives = 397/757 (52%), Gaps = 56/757 (7%)
Query: 8 LETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSG 67
LE + R+ Y+P L Q + V+ ++ PA + V VTPS ++F+
Sbjct: 370 LEKIADGRQRYYDPYEILRLQSQVSVVEKK---RPAYCTK-----IPAVTVTPSTLHFAT 421
Query: 68 PEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVLST 127
P + SNRVVR Y D FLR+ F DE L+ + P ++ + ++ R+
Sbjct: 422 PVLETSNRVVRQYQQYQDRFLRVKFRDE----LHKGKIFP----QDDHSESEVFSRISRA 473
Query: 128 LRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAAR 187
+ +G+ IGD+ +E LAF +SQ +++ + FAS LTAADIR+ MG+F IK VAKY AR
Sbjct: 474 MTHGVKIGDRIYEFLAFGSSQFREHGAYFFASTAALTAADIRKWMGNFTHIKVVAKYCAR 533
Query: 188 LGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIY 247
LGQ F ++R H + +IE I D+E +CF+DG GKIS LA ++A + G
Sbjct: 534 LGQCFSTTRSIPH--AVNIETISDIERNG----HCFTDGSGKISPFLARLIAHHYGLPNS 587
Query: 248 T---PSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLN 303
PSAFQ R G KGV++VDP + +R S K+ +E+ L+I S+Y +LN
Sbjct: 588 DDDHPSAFQFRLAGCKGVLSVDPALRGLTIQIRPSQQKFAAEAFGLEICRISQYSAAYLN 647
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALEL-MSSGENTNVLKELLM 362
Q+I +LS LG+ D VF + R + D + KA L+ + + T L ++M
Sbjct: 648 MQIILVLSALGVPDEVFIARVRTMLKDFDEAMKSEDKALILLQKNIDYNQMTLTLASMIM 707
Query: 363 CGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTL-----ESGQV 417
G+ +PF L+ +RA +L L+ + R+ ++ G + DETG L +S V
Sbjct: 708 DGFMETKDPFTTTCLRLWRAWSLKYLKEKARVLVEEGFFGIASPDETGILRGYSDDSPSV 767
Query: 418 -FVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMV 476
VQ FL + G+ V+ G +A+NP LHPGD+RV+RAVDVP LHH
Sbjct: 768 DEVQKDGDLPEIFLQIPDPDTPGKYIVLLGVCALARNPSLHPGDVRVVRAVDVPELHHKK 827
Query: 477 DCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP-LQFPPMDYTPAPEKVLARDMT 535
+ V+ P G RP N CSG DLDGD + V WD +LIPP PMDYT +T
Sbjct: 828 NEVILPITGDRPLANMCSGGDLDGDDFMVIWDKDLIPPERNHEPMDYTSPTPATSEGVVT 887
Query: 536 IEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAA 595
+ D+ +F +YI ND+L I AH AD + D + +CL LA L ++AVD+ KTGV A
Sbjct: 888 VADMSRFFVNYIKNDNLARIATAHRYWADWQDDGVKDPKCLALANLHSMAVDYVKTGVPA 947
Query: 596 TIPSGLRVEIYPDFMEKQDKT---CYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQS 652
+P+ L+V+++P + E + K+ Y S++V+G+LY VK +E + +
Sbjct: 948 YMPADLKVKMWPHWSEPKGKSKRKVYTSKKVLGQLYDEVK-------------RESVVAA 994
Query: 653 YDTDME------VDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKS 706
+D + D E + DA + K YD + M +GIKTE E+ + ++E +
Sbjct: 995 WDMPFDDRILSACDPTESMLDDAREIKALYDEAVRRAMAQHGIKTEFEVFTTFVLEHHQD 1054
Query: 707 FDKKRDLEAIIFAVKSLKKEARAWFNKKNESDSSHED 743
+ + E + +L+++ + ++ +DS D
Sbjct: 1055 INDYKFAETMGEVASNLRQQHQELCYERAGTDSKSRD 1091
>gi|156361828|ref|XP_001625486.1| predicted protein [Nematostella vectensis]
gi|156212322|gb|EDO33386.1| predicted protein [Nematostella vectensis]
Length = 531
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 225/546 (41%), Positives = 317/546 (58%), Gaps = 38/546 (6%)
Query: 168 IRESMGDFRDIKNVAKYAARLGQSFGSSREALHV---DSSDIEIIPDVEVEDDGI----- 219
IR +GD +I+ VA + +R+GQ F S+++++ V + IE IPDVE E + +
Sbjct: 1 IRSKLGDLEEIRCVAVFVSRMGQCFSSTKKSVEVSLDNGVRIEKIPDVEKEYNNVLFPCC 60
Query: 220 ------TYCFSDGIGKISAELAEIVAKNCGFTIYT--PSAFQIRYGGYKGVVAVDPTSST 271
Y FSDGIGKIS +LA VAK+ G PSA+QIRY G KG++AVDP+
Sbjct: 61 GNVRSGVYIFSDGIGKISKDLANKVAKSLGLEAVEMFPSAYQIRYAGCKGMLAVDPSLRG 120
Query: 272 K-LSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQ 330
+ L R SM K++S +L+I S+ + NRQ ITLLS LG+ D F + Q + +
Sbjct: 121 EVLQYRDSMKKFQSSHKALEICEPSRPSELYFNRQCITLLSGLGVPDDEFIRLQDKMLMD 180
Query: 331 LDAILTDPLKAHEALELMS--SGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLEL 388
L ++L A E+L +S G ++++ G EPF ML S L +L
Sbjct: 181 LASMLLYETSALESLGRISIAGGLKVSLIRH---SGIVVTCEPFFRSMLLAIYRSRLGDL 237
Query: 389 RTRTRIFI--QNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEG 446
R RI I +GR +MG LDETG+L+ G+VF++ + N ++ G
Sbjct: 238 LRRARIAIPESHGRLLMGVLDETGSLDYGEVFIRYT---------TELGNPGQGYTILTG 288
Query: 447 KVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVC 506
VVV+KNPC HPGDMR AVD+P+L+H+VDC+VFPAKG RPHT+E SGSDLDGD YF
Sbjct: 289 DVVVSKNPCFHPGDMRKFNAVDIPALYHLVDCIVFPAKGPRPHTDEMSGSDLDGDKYFAT 348
Query: 507 WDHELIPPL-QFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADL 565
W +IP PPMD+ P +K+L R + + D+ ++ ADYI ND LGVI NAH+VHAD
Sbjct: 349 WLRGIIPDRDNEPPMDFYPPKKKMLNRPIEVSDMIQFVADYIKNDQLGVIANAHLVHADS 408
Query: 566 EPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIG 625
E D S++C++LA + + AVDF KTG + LR E YPDFM K DK Y S V+G
Sbjct: 409 EQDGIFSDKCIKLAHMHSDAVDFPKTGECPELTKELRPEQYPDFMMKPDKPRYVSHNVLG 468
Query: 626 KLYRAVKDIAPPTATIKS-FTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLM 684
KL++ + + TK++ + D DM ++G + Y+ DA + + Y+ +L LM
Sbjct: 469 KLFQKCNSLERARRFMTGDSTKDITV---DQDMILEGHQSYLEDAIEQRDRYNAKLEALM 525
Query: 685 DYYGIK 690
YG++
Sbjct: 526 ARYGLE 531
>gi|320586448|gb|EFW99118.1| RNA-directed RNA polymerase [Grosmannia clavigera kw1407]
Length = 2177
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 244/702 (34%), Positives = 366/702 (52%), Gaps = 64/702 (9%)
Query: 40 TSPAVALD-DGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLD 98
T P LD D +Y+ K +VTP+ + FS P + NRV+R Y + D FLR+ F DE
Sbjct: 1087 TPPEATLDKDRAVYIRKAIVTPTTIVFSTPALEAGNRVLRHYREHHDRFLRVQFTDE--- 1143
Query: 99 KLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA 158
L+ LS + R + R L+NGI +G + F+ LAF NSQ+++N + FA
Sbjct: 1144 -LHIGRLS---GGPDTTRTDECFTRAFRALKNGIRVGGRHFKFLAFGNSQLRENGAYFFA 1199
Query: 159 SRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVD-SSDIEIIPDVEVEDD 217
+T D+R+ MGDF +IK VAKYAARLGQ ++R + ++ IPDVE
Sbjct: 1200 PTELVTCQDVRDWMGDFSNIKTVAKYAARLGQCLSTTRPVPTFGVPTTVQHIPDVE---- 1255
Query: 218 GITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP--TSSTKLSL 275
G +CF+DG+GKIS A ++A + + PSAFQ R GG KGV+ V P S + +
Sbjct: 1256 GGGFCFTDGVGKISKWWARVIASHLRVS-EVPSAFQFRMGGCKGVLVVWPDVPSGQVVQV 1314
Query: 276 RKSMLKYKS--ESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDA 333
R S K+ + ++ L+I+ S+ LN+Q I LL+ LGI VF + E + +DA
Sbjct: 1315 RPSQEKFPTSDKANVLEIVRCSETATATLNQQTILLLTCLGIPTSVFLELLNEELTGIDA 1374
Query: 334 ILTDPLKAHEALEL-MSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRT 392
++ D KA + L + + T+ L +++ G+ EPF+ +LQ +R+ L L+ +
Sbjct: 1375 VMKDARKAVDQLMVRVDQNHTTHALADMVKAGFMDSDEPFVWALLQLWRSWTLKALKEKA 1434
Query: 393 RIFIQNGRAMMGCLDETGTLES---------------------------GQVFVQ----- 420
RI ++ ++GC+DET TL Q+F+Q
Sbjct: 1435 RITVERSAFVLGCVDETDTLRGHTNEPERPTNEDTRDKIDDKENKIARLPQIFLQVPDLD 1494
Query: 421 -CSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
+A + R +D + G+ V+ G +V +NP LHPGD+RV+ AVDVP+LHH+ D V
Sbjct: 1495 AVTAGQVRSSIDQDAGH--GKYKVIVGLCLVGRNPSLHPGDLRVVEAVDVPALHHLRDVV 1552
Query: 480 VFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP---LQFPPMDYTPAPEKVLARDMTI 536
VFP G R CSG DLDGD YFV WD L+PP + M+Y + E + R +T+
Sbjct: 1553 VFPRVGDRDIPGMCSGGDLDGDDYFVFWDKRLLPPHRVWNYEAMNYEASREPDVDR-VTL 1611
Query: 537 EDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAAT 596
+ +F ++ +D+L I +H AD A +CLELA+L + AVD++KTG+ A
Sbjct: 1612 RHLISFFVQHMKHDTLPRIALSHRGFADQLDGGAMHPRCLELAQLHSQAVDYAKTGIPAL 1671
Query: 597 IPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTD 656
+P L + +P +M + K Y S +GK+Y VK + A K F + D D
Sbjct: 1672 LPHRLNPKQWPHWMNRIQKHTYRSPTALGKIYDRVKVDSFEPAYDKPFDVRILHHYPDLD 1731
Query: 657 MEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSG 698
+ D + A + KT+YD L M I +E E+ +G
Sbjct: 1732 I------DLLRRARRIKTQYDLALRRAMAQKEIGSEFEMWTG 1767
>gi|452987327|gb|EME87083.1| hypothetical protein MYCFIDRAFT_202751 [Pseudocercospora fijiensis
CIRAD86]
Length = 1276
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 255/768 (33%), Positives = 393/768 (51%), Gaps = 61/768 (7%)
Query: 8 LETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSG 67
LE + +E YEP+ Q + V++++ P D + V+VTPS +Y +
Sbjct: 277 LEKVADNKERVYEPMTIFRLQNQVSVVTKK---KP-----DYCTEIGSVVVTPSTIYAAT 328
Query: 68 PEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVLST 127
SNRV+R + D D FLR+ F DE I S+++ R ++ R+ T
Sbjct: 329 MVRETSNRVIRQFKDYEDRFLRVKFTDERYKGK--------IWSSDDNRMNEVFSRIKRT 380
Query: 128 LRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAAR 187
+ +GI IGD+ +E LAF NSQ +++ + FA +LTA IRE MG F I+ +AKY +R
Sbjct: 381 MTHGIQIGDRHYEFLAFGNSQFREHGAYFFAPTEKLTAEMIREWMGRFSHIRVIAKYVSR 440
Query: 188 LGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIY 247
LGQ F ++R H +++ V++E +G YCF+DG G +S LA ++A +
Sbjct: 441 LGQCFSTTRAIPH----KVDLGRSVDIERNG--YCFTDGAGTMSPFLARMIALHHNVPNS 494
Query: 248 T---PSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLN 303
PSA Q R G KGV+AVDP + +R S K+ +E L+I S++ LN
Sbjct: 495 EENFPSAVQFRLAGCKGVLAVDPALKGFAIQIRPSQEKFPAEYHGLEICRISQFSTANLN 554
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALEL-MSSGENTNVLKELLM 362
Q+I +LS LGI D VF K R + + ++D KA E L+ + + T +L ++
Sbjct: 555 MQIILVLSALGIDDEVFLGKMRAMLVDIKEAMSDERKALELLQKNIDYSQTTILLATMIF 614
Query: 363 CGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTL---------- 412
G+ +PF++ L+ +R+ L L+ + RI+++ G + DETGTL
Sbjct: 615 DGFMETKDPFMITCLRLWRSWCLKYLKEKARIYVEQGFFGLAVPDETGTLRGHYDKPVSA 674
Query: 413 -----------ESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDM 461
++G + FL + G+ V+ ++A+NP LHPGD+
Sbjct: 675 DSDNADTSDEHDAGSDEIASDEDLPEIFLQVPDPDAPGKYRVILSICILARNPSLHPGDV 734
Query: 462 RVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP-PLQFPPM 520
R +RAVD P LHH+ D VV P G R N CSG DLDGD + V WD IP PPM
Sbjct: 735 RKVRAVDKPELHHLRDVVVIPTTGDRDLANMCSGGDLDGDDFMVIWDPNFIPHGASHPPM 794
Query: 521 DYTPAPEKVLARD-MTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELA 579
DYT +P+ V + ++++D+ +F +I ND+L I AH AD D + +C+ELA
Sbjct: 795 DYT-SPDPVTSDGPVSVDDMTTFFVKHIKNDNLSSIAVAHRYWADQLADGVKDAKCIELA 853
Query: 580 KLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKT---CYESQRVIGKLYRAVKDIAP 636
+L + AVD+ KTGV A + GL+V+ +P + E ++K+ Y S RV+GKLY VK
Sbjct: 854 QLHSKAVDYPKTGVPAVMTPGLKVQKWPHWSEPKNKSKSKIYHSNRVLGKLYDEVKKEPF 913
Query: 637 PTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEIL 696
A F + + +D + DA + K EYD + +M +GIKTE EI
Sbjct: 914 HAAWDLPFDQRILTACEPSDR-------MLADAREVKAEYDEAIQRIMTQHGIKTEFEIW 966
Query: 697 SGCIMEMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESDSSHEDV 744
+ +++ + + E I V +L +E R +K SS+++
Sbjct: 967 TTFVLDHHQEIGDYKFSETIGAIVTALVEEHRERCKEKAGIKSSNKEA 1014
>gi|18656898|gb|AAL78034.1|AF468822_2 putative RNA-dependent RNA polymerase RDP-1 [Diaporthe perjuncta]
Length = 1484
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 235/701 (33%), Positives = 357/701 (50%), Gaps = 48/701 (6%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
V + ++TP+ +YF P + L+NR++R Y D D FLR+ F DE + SS
Sbjct: 552 VRRAVITPTTIYFKTPCVELTNRILRKYSDLNDRFLRVQFTDE-------VTFGKIFSSQ 604
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESM 172
+ + +Y RV ++NG++IGD+ ++ LAFSNSQ ++N + F +T A IR M
Sbjct: 605 DSNKDDNLYTRVHRVMQNGVIIGDRHYKFLAFSNSQFRENGAFFFCETDHVTCASIRNWM 664
Query: 173 GDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISA 232
GDFR I++V K+AAR+GQ F ++R+ + I I D++ + F+DG+GKIS
Sbjct: 665 GDFRHIRSVGKFAARMGQCFTTTRQVNGISIPKIRQIGDIQRRSGDNIWNFTDGVGKISV 724
Query: 233 ELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP-TSSTKLSLRKSMLKYKSESTSLDI 291
A ++A TPS FQ+R GG KGVV V P + ++ +R S K+K+ L+I
Sbjct: 725 FFARMIASERDLP-ETPSCFQMRMGGCKGVVVVWPDIPANEVHIRPSQEKFKAVYNGLEI 783
Query: 292 LANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSG 351
+ S + LN+Q+I +L LG+ D VF + + + + D L D +KA E L
Sbjct: 784 IKTSTFAHATLNKQVIPVLIALGVDDAVFVRMLDDELKEYDEALADSMKAGELLRSQVDE 843
Query: 352 ENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGT 411
T + ++ + EPFL +L+ ++ L L+ + I ++N + G +DETG
Sbjct: 844 NQTTLTMAEMVDTFMDSEEPFLWTLLRLWKCWVLKRLKQKFAISVKNSAMIFGVVDETGV 903
Query: 412 LES----------------GQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPC 455
L Q+F+Q ++ S + V+ G VV +NP
Sbjct: 904 LRGHSQDTEGKGFNNIESLPQIFLQVP-------IEGSDGKSTTNYEVITGICVVGRNPA 956
Query: 456 LHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP- 514
LHPGD+RV+ AVDVP L H+ + VVFP G R + CSG D+DGD YFV WD LIP
Sbjct: 957 LHPGDVRVVEAVDVPELRHLKNVVVFPKTGDRDVPSMCSGGDMDGDDYFVYWDERLIPSE 1016
Query: 515 LQFPPMDY---TPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKAR 571
PP+D+ + P D+T DV +FA Y+ NDSLG I AH AD +
Sbjct: 1017 WDHPPLDHDADSSTPGLDSPADVTNGDVTRFFAQYMKNDSLGRIATAHFAQADQLAGGVK 1076
Query: 572 SNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAV 631
+C+ELAKL + AVD+ K+G A + L+ +P +ME+ K+ Y S+ +G++Y +
Sbjct: 1077 HPKCIELAKLHSKAVDYIKSGKPAVMKRHLQPRNWPHWMERDKKSSYHSRGALGQIYDRI 1136
Query: 632 KDIAPPTATIKSFTKEVAMQSYDTDM--EVDGFEDYITDAFKYKTEYDNRLGNLMDYYGI 689
K I+ F M S+DT + ED + A + K YD + L +
Sbjct: 1137 K--------IEEFHAAYEM-SFDTRILSRYQLEEDTLAKASEIKAAYDIAMRRLTGQHEA 1187
Query: 690 K-TEAEILSGCIMEMAKSFDKKRDLEAIIFAVKSLKKEARA 729
TE EI S I+ + + E + + +LK RA
Sbjct: 1188 PVTEFEIWSTFILTKPRVGSDYKLQENVGREMAALKARFRA 1228
>gi|15422180|gb|AAK95829.1| putative RNA-dependent RNA polymerase [Diaporthe ambigua]
Length = 1483
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 251/785 (31%), Positives = 384/785 (48%), Gaps = 68/785 (8%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
V + ++TP+ +YF P + L+NR++R Y D D FLR+ F DE + SS
Sbjct: 553 VRRAVITPTAIYFKSPCVELTNRILRKYSDLNDRFLRVQFTDE-------ITSGKIFSSQ 605
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESM 172
+ + ++ RV +RNGIVIGD+ + LAFSNSQ ++N + F + +T IRE M
Sbjct: 606 DSTKDDNLFTRVHRVMRNGIVIGDRHYRFLAFSNSQFRENGAFFFCNTDHVTCESIREWM 665
Query: 173 GDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISA 232
GDFR I++V K+AAR+GQ F ++R+ + I I D++ + + F+DG+GKIS
Sbjct: 666 GDFRHIRSVGKFAARMGQCFTTTRQVNGISIPKIRQIGDIQQQTGDHIWNFTDGVGKISP 725
Query: 233 ELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP-TSSTKLSLRKSMLKYKSESTSLDI 291
LA ++A TPS FQIR GG KGVV P +++ +R S K+K+ L+I
Sbjct: 726 FLATLIANERNLP-ETPSCFQIRMGGCKGVVVTWPDVPPSEVHVRPSQEKFKAVYNGLEI 784
Query: 292 LANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSG 351
+ S + LN+Q+I +L LG+ VF + + + L D ++A E L
Sbjct: 785 IKTSAFSHATLNKQVIPVLVALGVDKSVFVSMLDSELTEYEEALADSMRAGELLRSQVDE 844
Query: 352 ENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGT 411
T + ++ + EPFL +L+ ++ L L+ + I ++N + G +DE G
Sbjct: 845 NQTTLTLAEMVDTFMDSEEPFLWTLLRLWKCWVLKRLKQKFAISVKNSAMVFGVVDEIGV 904
Query: 412 LESGQVFVQCSASRRRE--------FLDNSCNNRSGE----LGVVEGKVVVAKNPCLHPG 459
L Q + RR FL G+ V+ G VV +NP LHPG
Sbjct: 905 LRG---HSQATEGRRDNNIESLPQIFLQVPVEGSDGKSTTNYEVITGLCVVGRNPSLHPG 961
Query: 460 DMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQF-- 517
D+RV+ AVD L H+ + VVFP G R + CSG D+DGD YFV WD LI PL++
Sbjct: 962 DVRVVEAVDALELRHLKNVVVFPRTGDRDIPSMCSGGDMDGDDYFVYWDERLI-PLEWYH 1020
Query: 518 PPMDY-----TPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARS 572
PP+D+ TP +K D+TIEDV +FA Y+ NDSLG I AH AD ++
Sbjct: 1021 PPLDHDAESSTPGLDK--PEDVTIEDVTRFFAQYMKNDSLGRIATAHFAQADQLSGGVKN 1078
Query: 573 NQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVK 632
+C+ELAKL + AVD+ K+G A + L+ +P +ME++ K+ Y S +G++Y +K
Sbjct: 1079 PKCIELAKLHSKAVDYIKSGKPAVMQRHLQPRKWPHWMEREKKSSYPSVSALGQIYNRIK 1138
Query: 633 DIAPPTATIKSFTKEVAMQSYDTDM--EVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIK 690
I+ F M +D + +D + +A K K YD + LM +
Sbjct: 1139 --------IEEFHAAYEM-PFDVRILSRYQLEDDTLAEAGKIKEAYDIAMRRLMGQHEAP 1189
Query: 691 -TEAEILSGCIMEMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESDSSHEDVYAKAS 749
TE EI S I+ + + E + + +LK+ RA ++ ++ +S
Sbjct: 1190 VTEFEIWSTFILSKPRVGSDYKLQENVGREMAALKERFRAECMTAATGNTQAQEFTFSSS 1249
Query: 750 -----------AWYHVAYHPSYWGRYKEEGMNRTH-----------FLSFPWCIHDKLIE 787
A + H +E M R +SFPW H +L
Sbjct: 1250 MVNLEKLDRFVAAMYTVTHNEVRAAARERSMPRPDHDGEPEEVQMPLISFPWLFHRELAR 1309
Query: 788 IKRGK 792
+ G+
Sbjct: 1310 VALGR 1314
>gi|17227102|gb|AAL38011.1|AF443073_1 putative RNA-dependent RNA polymerase [Phomopsis sp. CMW 5588]
Length = 1122
Score = 370 bits (951), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 247/783 (31%), Positives = 380/783 (48%), Gaps = 66/783 (8%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
V + ++TP+ +YF P + L+NR++R Y D D FLR+ F DE + SS
Sbjct: 172 VRRAVITPTTIYFKTPCVELTNRILRKYSDLNDRFLRVQFTDE-------ITFGKIFSSQ 224
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESM 172
+ + +Y RV ++NGI IGD+ + LAFSNSQ ++N + F +T IRE M
Sbjct: 225 DSNKDDNLYIRVHRVMQNGISIGDRHYRFLAFSNSQFRENGAFFFCETDHVTCDSIREWM 284
Query: 173 GDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISA 232
GDFR I++V K+AAR+GQ F ++R+ + +I I D+E + T+ F+DG+GKIS
Sbjct: 285 GDFRHIRSVGKFAARMGQCFTTTRQVNGISIPNIRKIDDIERQTGDHTWNFTDGVGKISN 344
Query: 233 ELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP-TSSTKLSLRKSMLKYKSESTSLDI 291
A+++A TPS FQ+R GG KGV+ V P +++ +R S K+K+ L+I
Sbjct: 345 FFAKLIASERDLP-ETPSCFQMRIGGGKGVLVVWPDVPPSEVHVRPSQEKFKAVYNVLEI 403
Query: 292 LANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSG 351
+ + N+Q+I +L LG+ + VF + + + D L D +KA E L
Sbjct: 404 IKTFAFSHATFNKQVIPVLVALGVDNSVFVSMLDDELREYDEALADSMKAGELLRSQVDE 463
Query: 352 ENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGT 411
T + ++ + EPFL +L+ ++ L L+ + I ++ + G +DE G
Sbjct: 464 NQTTLTMAEMVDTFMDSKEPFLWTLLRLWKCWILKRLKHKFAISVKKSAMVFGVVDEIGV 523
Query: 412 LESG----------------QVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPC 455
L Q+F+Q ++ S + V+ G VV +NP
Sbjct: 524 LRGHSQATEGRGYNSIESLPQIFLQVP-------IEGSDGRSTTNYEVITGICVVGRNPS 576
Query: 456 LHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP- 514
LHPGD+RV+ AVDVP L H+ + VVFP G R + CSG D+DGD YFV WD LIP
Sbjct: 577 LHPGDVRVVEAVDVPELRHLKNVVVFPKTGDRDIPSMCSGGDMDGDDYFVYWDERLIPTE 636
Query: 515 LQFPPMDYTPAPEKV-LARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSN 573
PP+++ + D+TIEDV +FA Y+ NDSLG I AH AD ++
Sbjct: 637 WDHPPLNHDAGSSTLDKPADVTIEDVTRFFAQYMKNDSLGRIATAHFAQADQLSGGVKNP 696
Query: 574 QCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKD 633
+C+ELAKL ++AVD+ K+G A + L+ +P +MEK+ K+ Y S +GK+Y +K
Sbjct: 697 KCIELAKLHSMAVDYIKSGRPAVMKRHLQPRKWPHWMEKEKKSNYRSYSALGKIYDRIKI 756
Query: 634 IAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIK-TE 692
A F + + Y + D + A K K YD + LM + TE
Sbjct: 757 EEFHAAYEMPFDARI-LSRYQLEA------DTLAKASKIKATYDIAMRRLMGQHEAPVTE 809
Query: 693 AEILSGCIMEMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESDSSHEDVYAKAS--- 749
EI S I+ + + E + + +LK RA + + E +A AS
Sbjct: 810 FEIWSTFILSRPRVGSDYKLQENVGRELAALKLRFRAECMEAVTGNIQTEG-FAPASSVV 868
Query: 750 ---------AWYHVAYHPSYWGRYKEEGMNRTH-----------FLSFPWCIHDKLIEIK 789
A + H +E M + + +SFPW H +L +
Sbjct: 869 NLEKLDRFVAAMYTVTHNDVRAALRERSMPKPNGEGGSEEIQMPLISFPWLFHRELARVA 928
Query: 790 RGK 792
G+
Sbjct: 929 LGR 931
>gi|340521639|gb|EGR51873.1| predicted protein [Trichoderma reesei QM6a]
Length = 1161
Score = 370 bits (949), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 242/701 (34%), Positives = 384/701 (54%), Gaps = 55/701 (7%)
Query: 51 IYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLDKLYSTVLSPLI 109
+ K VTP+ + S P + SNRV+R + D FLR+ FV+E + ++ +
Sbjct: 338 VLARKAAVTPTTILLSTPVVETSNRVLRYFNHIQDRFLRVQFVEETEFGRM-------AM 390
Query: 110 SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIR 169
S N+E +++++L TL GI IGD+ ++ LAF +SQ++ + F ++ DIR
Sbjct: 391 SCRNKE---DVWKKILRTLYQGIQIGDRHYQFLAFGSSQLRQCGAYFFCPTDHISCDDIR 447
Query: 170 ESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGK 229
MG+ I+ VAKYAARLGQ F ++RE + D+ IPDVE YCF+DG+G
Sbjct: 448 RWMGEVGHIRIVAKYAARLGQCFSTTREMRGLPIPDVRSIPDVERNG----YCFTDGVGI 503
Query: 230 ISAELAEIVAKNCGFTIYT-PSAFQIRYGGYKGVVAVDPTSST-KLSLRKSMLKYKSEST 287
IS +A+++ + +Y PSAFQ R GG KGV+ V P ++ ++ +R+S K+K+E
Sbjct: 504 ISDFMAQMIMEELTLDVYAEPSAFQFRMGGCKGVLVVWPQATKGEVCIRQSQEKFKAEVK 563
Query: 288 SLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALEL 347
+L+I+ +KY LNRQ IT+L LG+ F E + + + K A+E+
Sbjct: 564 NLEIIKCAKYSSATLNRQTITILECLGVTKKAFLDILEEQIRLYEEAMG---KNDVAIEM 620
Query: 348 MSS----GENTNVLKELLMCGYKPD--VEPFLLMMLQTFRASNLLELRTRTRIFIQNGRA 401
+++ ++T +L ELL G+K D EPF+ +L +R+ +L L+ + RI +
Sbjct: 621 LTNCVDENQSTLILAELLQAGFKTDKVQEPFVANLLSLWRSWSLKLLKEKARIPVDKSAF 680
Query: 402 MMGCLDETGTLESGQVFVQCSASRR-----REFLDNSCNNRSGELGVVEGKVVVAKNPCL 456
++GC+DET TL + + S+ + + FL S + + VV+G VV +NP L
Sbjct: 681 VLGCVDETSTLRGHFIATEGSSDKDISKLPQIFLQVSDSKIYNKTHVVKGLCVVGRNPSL 740
Query: 457 HPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPL- 515
HPGD+RV+ AVD+P LHH+ D VVFP+ G RP N SG DLDGD +FV W+ L+P +
Sbjct: 741 HPGDIRVVEAVDIPGLHHLKDVVVFPSTGDRPVPNMLSGGDLDGDDFFVIWEPTLLPEIW 800
Query: 516 QFPPMDYT-PAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHAD-LEPDKARSN 573
P M+YT P+PE L R++ ++D+ ++F Y+ ND L +I AH+ AD L P S
Sbjct: 801 NHPAMNYTSPSPE-TLDREVNVDDLRDFFVKYMKNDVLPLIATAHLALADRLGP---LSK 856
Query: 574 QCLELAKLSTIAVDFSKTGVAATIPSGLR-VEIYPDFMEKQDKTCYESQRVIGKLYRAVK 632
CL LA L + AVD+ KTG A + + + +P FMEK K Y S + +G +Y VK
Sbjct: 857 ICLHLADLHSQAVDYPKTGQPAEWNAAMHNPQQWPHFMEK--KNSYISPKALGDIYNRVK 914
Query: 633 DIAPPTATIKSFTKEVAMQSYDTDMEVDGFED---YITDAFKYKTEYDNRLGNLMDYYGI 689
+S + ++ +D FE + DA + K++YD + ++ ++ +
Sbjct: 915 Q--------QSIQFQPDWETAFDRRILDRFEPDNATLRDARRIKSQYDGAVRRILVHHNL 966
Query: 690 KTEAEILSGCIME---MAKSFDKKRDLEAIIFAVKSLKKEA 727
+TE E+ + M + + ++ DL AVK ++A
Sbjct: 967 ETEFELYTSWAMSKPPLGSEYKRQEDLGKEFDAVKQRFRDA 1007
>gi|255944161|ref|XP_002562848.1| Pc20g02950 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587583|emb|CAP85624.1| Pc20g02950 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1368
Score = 368 bits (944), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 256/785 (32%), Positives = 396/785 (50%), Gaps = 70/785 (8%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDE--IDNFLRLSFVDEDLDKLYSTVLSPLI 109
++ +TP+ +Y++ P + +SNRVVR + + FLR+ F DE + I
Sbjct: 465 FMRTARITPTTIYYNTPTVDISNRVVREWSTKGTPGRFLRVRFTDEKTEGR--------I 516
Query: 110 SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIR 169
+++ + +Y RV TL NGI IGD+ +E LAF NSQ +++ + A ++A IR
Sbjct: 517 NASQRGCNDEVYTRVKRTLANGIAIGDRHYEFLAFGNSQFREHGAYFVAPDAGISAGTIR 576
Query: 170 ESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGK 229
MG F I+NVAKY ARLGQ F ++R S ++ IP ++ +G T FSDG+GK
Sbjct: 577 AWMGQFNHIRNVAKYTARLGQCFSTTRA---FTGSSVQTIPCDDIIRNGFT--FSDGVGK 631
Query: 230 ISAELAEIVAKNCGFTIYT---PSAFQIRYGGYKG--VVAVDPTSSTKLSLRKSMLKYKS 284
IS LA++V T PSAFQ R GG KG VV+ DP ++ +R S K+++
Sbjct: 632 ISKFLAQMVTSQHDIKTLTGEPPSAFQFRLGGAKGMLVVSTDPLPQ-EVHIRPSQQKFET 690
Query: 285 ESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEA 344
L+I+ S+Y LNRQ+I +LS LGI D VF K + + + KA
Sbjct: 691 SQAGLEIIRWSQYSLATLNRQIILVLSALGIPDEVFHSKLNTMLGSFHRAMLNDSKAINL 750
Query: 345 LE-LMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMM 403
L+ + + T L +++ G++ + EPF+ ML+ +++ +L L+ + +I I G ++
Sbjct: 751 LQKYIDPNQMTLTLAQMVSDGFRRNEEPFVNTMLELWKSWHLKHLKEKAKIAIDQGANVL 810
Query: 404 GCLDETGTLESGQVFVQCSASRRREFLD----------NSCN-NRSGELGVVEGKVVVAK 452
G +DETG L+ F + SRR + + C + GE V+EG ++A+
Sbjct: 811 GVMDETGVLKG--YFRKELPSRRASYAEKLAALPEIFVQVCRLDGGGEYEVIEGLCILAR 868
Query: 453 NPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI 512
NP LHPGD+RV+RAV+ LH + D VV P G + + CSG DLDGD Y V WD LI
Sbjct: 869 NPSLHPGDIRVVRAVNRSELHALRDVVVLPQTGDQDIASMCSGGDLDGDDYLVIWDPNLI 928
Query: 513 PPLQFPP-MDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKAR 571
P F MDY + L D+T++++ +F Y+ ND L I +AH+ AD P
Sbjct: 929 PANWFVECMDYKGSKAPDLDHDVTVDEITSFFVTYMKNDCLPRIAHAHLAWADRLPRGVW 988
Query: 572 SNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDK---TCYESQRVIGKLY 628
++C+ LA+L + AVD++K+G A + L + +P FMEK+ K + Y+S +++G+LY
Sbjct: 989 EDKCIRLAQLHSDAVDYNKSGAHARMARSLDPKFWPHFMEKRFKRPSSIYKSTKILGQLY 1048
Query: 629 RAV--KDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDY 686
AV D P K F + E Y+ A + K E+D + +M
Sbjct: 1049 DAVITPDFVPKLE--KPFDSRILESPL-----APASEAYMEYARELKAEFDMNMRQIMAQ 1101
Query: 687 YGIKTEAEILSGCIME---MAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESDSSHED 743
Y I TE E+ S ++ + K + + DL I V +L++ R K D +
Sbjct: 1102 YEINTEFEVWSTFVLRHGFVIKDYKMQEDLGRI---VGTLRRGFRHQCYDKVGRDGG--N 1156
Query: 744 VYAKASAWYHVAYH--PSYWGRYKEEGMNRTH------------FLSFPWCIHDKLIEIK 789
+ A A Y V + + E + R +SFPW D L ++
Sbjct: 1157 IPALVIAMYRVTQEQVAAALEARRNEALQREDVSIAEVNSTELPLISFPWIFPDVLGDVA 1216
Query: 790 RGKQR 794
G+ R
Sbjct: 1217 TGRAR 1221
>gi|325088329|gb|EGC41639.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H88]
Length = 1522
Score = 368 bits (944), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 212/584 (36%), Positives = 338/584 (57%), Gaps = 30/584 (5%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDED-LDKLYSTVLSPLIS 110
Y+ +TPS +++ P + SNRV R + + D FLR+ F DE + ++YS S
Sbjct: 609 YMRSADITPSTIHYDIPSVDTSNRVFRYHREHADRFLRVRFCDEKYMGRIYSN------S 662
Query: 111 STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRE 170
+ N + +Y RV L++GI+IGD+ +E LAF NSQ +++ + FAS P LTAA+IR
Sbjct: 663 NGNNLCMSEVYARVTRILQHGIIIGDRHYEFLAFGNSQFREHGAFFFASLPHLTAANIRA 722
Query: 171 SMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKI 230
MGD +IK VAKYAARLGQ F ++R V S +++ ++E +G Y FSDG+G++
Sbjct: 723 QMGDLNNIKVVAKYAARLGQCFSTTRA---VTSCPVQLKEVDDIERNG--YVFSDGVGRL 777
Query: 231 SAELAEIVAKNCGFTIYT---PSAFQIRYGGYKGVVAVDPTS-STKLSLRKSMLKYKSES 286
S L +++ + G + PSAFQ R GG KG++AV + ++ +RKS K+ +
Sbjct: 778 SHFLTQMIRSDLGINTPSGQPPSAFQFRLGGCKGILAVSSDAHGQEVHIRKSQYKFAAAH 837
Query: 287 TSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALE 346
L+I+ +S + LNRQLI +LS LG+ D VF K R + +L+ +T+ +A L+
Sbjct: 838 HGLEIIRHSHFSLATLNRQLILVLSCLGVPDKVFIAKLRMMMDKLEQAMTNEEQAVHLLQ 897
Query: 347 L-MSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGC 405
+ + T +L +++ G++ EPF+ +L+ +R + L+ + +I + G ++GC
Sbjct: 898 THVDPNQMTLILADMVRDGFQGSKEPFVSSLLELWRTWQIKYLKEKAKIAVDEGAFLLGC 957
Query: 406 LDETGTLE----SGQVFVQCSASRR----REFLDNSCNNRSGELGVVEGKVVVAKNPCLH 457
+DET TL+ S + + R E + G+ ++EG ++A+NP LH
Sbjct: 958 IDETKTLKGYFRSSRPGQDATYEERVACLPEIFVQVWRHSEGKYVIIEGVCILARNPSLH 1017
Query: 458 PGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQF 517
PGD+RV++AV+ PSLHH+ D VV P G R ++ CSG DLDGD Y V WD +++P F
Sbjct: 1018 PGDIRVVKAVNAPSLHHLRDVVVLPQTGDRDISSMCSGGDLDGDDYVVIWDQDILPTDWF 1077
Query: 518 -PPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCL 576
PMDY +VL RD+T++D+ +++ +Y+ ND L I AH+ AD + ++ +CL
Sbjct: 1078 HDPMDYAAPKPEVLDRDVTVDDITKFYVNYMQNDRLPQIALAHLALADYMEEGVKNEKCL 1137
Query: 577 ELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYES 620
+LA L + AVD++K+G IP L + P KT Y++
Sbjct: 1138 QLAALHSAAVDYNKSG----IPVKLTRNLKPRSFATNLKTQYDA 1177
>gi|346325393|gb|EGX94990.1| RNA-directed RNA polymerase (Sad-1) [Cordyceps militaris CM01]
Length = 1102
Score = 367 bits (942), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 250/783 (31%), Positives = 405/783 (51%), Gaps = 60/783 (7%)
Query: 37 RFLTSPAVA-LDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDE 95
+FL +PA + V KV +TP+ + + P + SNRV+R Y + D FLR+ F+ E
Sbjct: 197 KFLCAPAKKRIPHYCSLVLKVNITPTCLKLNLPNVESSNRVMRKYNNLHDRFLRVQFLSE 256
Query: 96 -DLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSM 154
+ D++ + + + +++R+L L GI IGD+ +E LAF NSQ+++ S+
Sbjct: 257 TESDRI----------AKDRYNNDDVWKRLLRALHKGIRIGDRTYEFLAFGNSQLREGSV 306
Query: 155 WMFASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEV 214
F L+ DIR+ +G+F I+N+AK+ AR+GQ F ++RE + + +I D+E
Sbjct: 307 TFFCPTAYLSCDDIRKWLGNFDHIRNIAKFGARIGQCFSTTREVRGIRVPTVRLIDDIET 366
Query: 215 EDDGITYCFSDGIGKISAELAEIVAKNCGFTIY-TPSAFQIRYGGYKGVVAVDPTSSTK- 272
E + CFSDG+G IS L ++V + PSAFQ R GG KGV+AV P K
Sbjct: 367 EGE----CFSDGVGIISGLLGKLVVDEMKLDVVGEPSAFQFRMGGAKGVLAVWPREYAKH 422
Query: 273 --LSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQ 330
+ +RKS +K+ +E+ +L+I+ +K LNRQ I +L LG+ F + + Q
Sbjct: 423 MEVCVRKSQIKFTTEANTLEIVKCAKTTTATLNRQTIIILEHLGVSCGAFLELLNAHIKQ 482
Query: 331 LDAILTDPLKAHEAL-ELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELR 389
+ +TD A + L + + + T ++ ELL ++ +PF+ +L+ +R+ +L ++
Sbjct: 483 YEEAMTDRTAAIDLLTKFVDENQTTVIIAELLKADFQ---DPFVKNLLKLWRSWSLKLMK 539
Query: 390 TRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRRE-----FLDNSCNNRSGELGVV 444
+ RI ++ +MGC+DETGTL+ + S ++R + FL S + ++
Sbjct: 540 EKCRIHVEKSAFVMGCVDETGTLQGHSKKTEGSNTKRMDDLPQIFLQISNRKYRNKTTII 599
Query: 445 EGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYF 504
+G ++ +NP LH GD+RV++AVD+ L H+ D VVFP+KG R + SG DLDGD YF
Sbjct: 600 KGLCLIGRNPSLHAGDIRVVQAVDMQCLRHLKDVVVFPSKGDRSLPSMLSGGDLDGDDYF 659
Query: 505 VCWDHELIPPL-QFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHA 563
V W+ L+P + PPM P + L RD+ + D+ + Y+ ND LG+I +H+ HA
Sbjct: 660 VIWEPTLMPKVWNTPPMHSEPVNPQNLDRDVEVNDLRNFVVKYMKNDFLGLIAYSHLAHA 719
Query: 564 DLEPDKARSNQCLELAKLSTIAVDFSKTGVAAT-IPSGLRVEIYPDFMEKQDKTCYESQR 622
D + S CL+LA+L + AVD+ KTG+ A + + + +P FM+ + +T Y S+R
Sbjct: 720 DKK--GVNSPMCLQLAELHSQAVDYPKTGIPAEWTRAKYQPKEWPHFMQPKSRT-YHSRR 776
Query: 623 VIGKLYRAVK----DIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDN 678
+GKLY V D P + F V+ + TD D + A KTEYD
Sbjct: 777 ALGKLYDRVAHENFDYVP--SCEDEFDSRVSQGIHLTD-------DILAIARDIKTEYDQ 827
Query: 679 RLGNLMDYYGIKTEAEILSGCIME---MAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKN 735
L+ + + TE E+ SG M + + ++ DL A+K ++
Sbjct: 828 AARRLLKQFRLATEFELYSGWAMSKPAVGSDYKRQEDLGQQFGALKQRFRD--MCIQAAG 885
Query: 736 ESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRT------HFLSFPWCIHDKLIEIK 789
E+ +V +A Y V EG + T + FPW H L++I
Sbjct: 886 EAGGGQLEVL--VAAMYKVTQDEVKCFLAAAEGGDLTCSSKPMPLIGFPWIFHWVLVKIA 943
Query: 790 RGK 792
G+
Sbjct: 944 MGR 946
>gi|358384867|gb|EHK22464.1| hypothetical protein TRIVIDRAFT_28428 [Trichoderma virens Gv29-8]
Length = 1158
Score = 367 bits (941), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 231/693 (33%), Positives = 378/693 (54%), Gaps = 39/693 (5%)
Query: 51 IYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLIS 110
+ K +TP+ + S P + SNRV+R + D FLR+ FV+E + S ++ ++
Sbjct: 330 VLARKAAITPTSILLSSPIVETSNRVLRYFNHIQDRFLRVQFVEE----MESGRIA--MT 383
Query: 111 STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRE 170
S N+E +++++L TL GI IGD+++E LAF +SQ++ + F ++ DIR
Sbjct: 384 SRNKE---DVWKKILRTLYEGIQIGDRRYEFLAFGSSQLRQCGAYFFCPTDHISCDDIRR 440
Query: 171 SMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKI 230
MG+ I+ VAK+AARLGQ F ++RE + D+ IPD+E YCF+DG+G I
Sbjct: 441 WMGEVGHIRIVAKHAARLGQCFSTTREMRGLPVPDVRRIPDIERNG----YCFTDGVGMI 496
Query: 231 SAELAEIVAKNCGFTIYT-PSAFQIRYGGYKGVVAVDPTSST-KLSLRKSMLKYKSESTS 288
S +A ++ + +YT P+AFQ R GG KGV+ V P + ++ +R+S K+K++
Sbjct: 497 SEFMARMIIEEMTLDVYTEPTAFQFRMGGCKGVLVVWPQAKKGEVYIRESQEKFKADVKG 556
Query: 289 LDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLD-AILTDPLKAHEALEL 347
L+I+ +KY LNRQ IT+L LG+ F + ++ + A+ + + + +
Sbjct: 557 LEIIKCAKYSSATLNRQTITILECLGVSTPAFLAILEKQISLYEEAMKNNNVAVNILTKC 616
Query: 348 MSSGENTNVLKELLMCGYKPDV--EPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGC 405
+ ++T +L ELL G+K D EPF+ +L +R+ +L LR + RI I+ ++GC
Sbjct: 617 VDENQSTLILAELLQSGFKTDTVQEPFVTNLLALWRSWSLKLLRDKARIPIEKSAFVLGC 676
Query: 406 LDETGTLESGQVFVQCSASR-----RREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGD 460
+DETG L + + + + FL S + + +EG +V +NP LHPGD
Sbjct: 677 VDETGILRGHSNATEGTVDKDINKLPQIFLQVSDSKVYDQANAIEGVCIVGRNPSLHPGD 736
Query: 461 MRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP-LQFPP 519
+RV+ AVD+P LHH+ D VVFP+ G RP N SG DLDGD +F+ W+ LIP P
Sbjct: 737 IRVVEAVDIPELHHLKDVVVFPSTGDRPVPNMLSGGDLDGDDFFIIWEPTLIPTEWNHPA 796
Query: 520 MDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELA 579
M+Y+ L RD+ D+ ++F Y+ ND L +I AH+ AD D +S+ CL LA
Sbjct: 797 MNYSSPSPATLDRDVNANDLRDFFVRYMQNDVLPLIATAHLGLAD--SDGPKSDICLRLA 854
Query: 580 KLSTIAVDFSKTGVAATIPSGLR-VEIYPDFMEKQDKTCYESQRVIGKLY-RAVKDIAPP 637
+L + AVD+ KTG A GL + +P FM+K K CY+S++ +G +Y R +K
Sbjct: 855 ELHSQAVDYPKTGEPAEWNPGLHNPKEWPHFMDK--KVCYKSKKALGAIYNRVIKQSIQF 912
Query: 638 TATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILS 697
++ + ++ + D + + DA K++YD + ++ + ++TE E+ +
Sbjct: 913 RPDWENAFDQRILKRFQLDNAM------LKDARIIKSQYDIAVRRILLQHKLETEFELYT 966
Query: 698 GCIM---EMAKSFDKKRDLEAIIFAVKSLKKEA 727
M + + ++ +L AVK +EA
Sbjct: 967 SWAMSKPSVGSDYKRQEELGKEFDAVKQRFREA 999
>gi|302420105|ref|XP_003007883.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
gi|261353534|gb|EEY15962.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
Length = 1465
Score = 356 bits (913), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 231/671 (34%), Positives = 345/671 (51%), Gaps = 88/671 (13%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
V KV+VTP+ +Y S P + SNRV+R Y D FLR+ F DE ST
Sbjct: 490 VRKVVVTPTTIYLSSPGVEASNRVIRKYQHVSDRFLRVQFTDELTRGRIST-------RA 542
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESM 172
E +++RV T+ NGI IGD+ ++ LAF NSQ+++ + F L ++R+ M
Sbjct: 543 KMELDHYVFKRVYLTMINGIRIGDRHYKFLAFGNSQIRECGAYFFCETVHLKCTEMRQWM 602
Query: 173 GDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISA 232
G+F I VAK+AARLGQ F ++RE + + +I+IIPD+E +CF+DG+GKIS+
Sbjct: 603 GNFNHIHIVAKFAARLGQCFSTTREIRSIRAPNIQIIPDIERNG----HCFTDGVGKISS 658
Query: 233 ELAEIVAKNCGF-TIYTPSAFQIRYGGYKGVVAVDPTS-STKLSLRKSMLKYKSESTSLD 290
LA +V + G T+ TPSAFQ R GG KGV+AV P + + +RKS K+K+ L+
Sbjct: 659 FLASMVLEEMGLETVETPSAFQFRMGGCKGVLAVWPEAKGMYVHIRKSQEKFKATFNGLE 718
Query: 291 ILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSS 350
I+ +++ LNRQ IT+L++LGI+ VF + + + + D A L
Sbjct: 719 IIRCARFSAATLNRQTITILTSLGIKSEVFMDLLQRQLHSYEKAMNDQGAAAVLLGRHID 778
Query: 351 GENTNV-LKELLMCGY-KPDV-EPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLD 407
+T++ L++L+ G+ + DV EPF+L +LQ +R ++ LR + RI + G ++GC+D
Sbjct: 779 ENHTSLALRDLINWGFMRHDVQEPFVLTILQLWRVWSMKLLRDKARIVVDKGAFVLGCVD 838
Query: 408 ETGTLES-----------------GQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVV 450
ET TL Q+F+Q R F + V++G +V
Sbjct: 839 ETATLRGHNRASEGQTTSRNVELLPQIFLQIPDPDDRHFFN-----------VIKGVCIV 887
Query: 451 AKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHE 510
+NP LHPGD+RV+ AVDVP L HM + VVFP+ G + SG DLDGD +FV WD +
Sbjct: 888 GRNPSLHPGDIRVVEAVDVPQLRHMKNVVVFPSTGDVDVPSMLSGGDLDGDDFFVIWDPD 947
Query: 511 LIPPL-QFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDK 569
LIPP+ F PMD KVL RD+ +D+
Sbjct: 948 LIPPVWNFRPMDNAAPQTKVLDRDVNTKDL------------------------------ 977
Query: 570 ARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFM--EKQDKTCYESQRVIGKL 627
L+LAKL + AVD+ K+G A + LR +P FM + + Y S +G++
Sbjct: 978 -----SLQLAKLHSKAVDYVKSGDPAELGRELRARRWPHFMGGRRNKNSIYHSYTALGQI 1032
Query: 628 YRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYY 687
Y ++D+ K F + + + D V + A + K+ YD + LM
Sbjct: 1033 YDRIQDVPFNPLYEKKFDRRILTRFAPIDNAV------LKQARRLKSTYDTAMRRLMAQR 1086
Query: 688 GIKTEAEILSG 698
+ TE EI +G
Sbjct: 1087 EVSTEFEIWTG 1097
>gi|290974592|ref|XP_002670029.1| RNA-directed RNA polymerase [Naegleria gruberi]
gi|284083583|gb|EFC37285.1| RNA-directed RNA polymerase [Naegleria gruberi]
Length = 663
Score = 355 bits (911), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 225/632 (35%), Positives = 341/632 (53%), Gaps = 50/632 (7%)
Query: 172 MGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKIS 231
MGDF DIK AK AAR GQ S+ ++ + + DIE + D+E +G T F+DGIGKIS
Sbjct: 1 MGDFTDIKTPAKVAARFGQCLTSTTPSIEI-TKDIEPVEDIE--RNGFT--FTDGIGKIS 55
Query: 232 AELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYKSESTSLD 290
E+ + V + SA Q R GG KGV+A+DPT ++ RKS K+ S L+
Sbjct: 56 EEMMQRVKEKLQLGESLLSAIQFRCGGGKGVLAIDPTLKGEQIVFRKSQFKFTSIQKQLE 115
Query: 291 ILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSS 350
I+ SK + FLNRQ IT+L+ LGI+D +F KQRE + + +I D KA+E L + S
Sbjct: 116 IVDYSKRRSGFLNRQFITILTALGIKDEIFMTKQREMIRSILSITDDVSKAYEWLSIYHS 175
Query: 351 GENTNVLKELLMCGYKPDV---EPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLD 407
+ +L Y P++ E F++ ML +++ L LR +T+I+I+ +MG +D
Sbjct: 176 NHTRTFICHVLK--YVPEIATSENFIMNMLSSYKEQLLKGLRDKTKIYIEKSAYLMGAID 233
Query: 408 ETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAV 467
E G LE ++FV S R + E GVV+G+ +V KNP LH GD+R++ AV
Sbjct: 234 EYGVLEENEIFVNLSPIFHRP---------NAEFGVVKGRCIVGKNPSLHKGDLRIVTAV 284
Query: 468 DVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYT---- 523
D P L+H+ D VVF KGKRP TN +GSDLDGD +FV WD +LIP PMDY+
Sbjct: 285 DRPELYHLNDVVVFSKKGKRPITNMITGSDLDGDQFFVYWDPDLIPESDSEPMDYSVGAV 344
Query: 524 --PAPEK---VLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLEL 578
P +K + +D+ ++F ++I ++LG+I N H+ ++D + S +CL L
Sbjct: 345 AKPTNKKDEEEEEYKIKQDDIIDFFIEFITRNNLGLIANTHLANSDFRKNGLTSKECLTL 404
Query: 579 AKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPT 638
+L + AVD +K+G A IPS +++ YP FM K Y+S++V+GKL+ +
Sbjct: 405 CELHSTAVDSAKSGKFAIIPSKVKLYEYPHFMISSMKRKYKSKKVLGKLFDETQ------ 458
Query: 639 ATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSG 698
K T + +++ + VDGF+ Y+ + + Y + + M YG++ E++I+SG
Sbjct: 459 --FKHETPGKCNKKHNSLLIVDGFDKYLKEIEPHYYNYSRFVNSDMVKYGVEDESQIISG 516
Query: 699 CIMEMAKSFD-KKRDL-EAIIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAY 756
I K F K+ D+ E I + K R F + E + A ASAWY++ +
Sbjct: 517 WINTNIKCFGHKEHDIHETIAITISFYLKHFRNVFEEMVRKYGESERL-AIASAWYYITH 575
Query: 757 HPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEI 788
N+ + SF W +L+ I
Sbjct: 576 TEK----------NQFNIFSFGWINFKELVMI 597
>gi|425780985|gb|EKV18967.1| RNA-directed RNA polymerase (Sad-1), putative [Penicillium digitatum
PHI26]
Length = 1533
Score = 352 bits (903), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 233/711 (32%), Positives = 368/711 (51%), Gaps = 52/711 (7%)
Query: 120 IYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIK 179
IY RV TL NGI IGD+ +E LAF NSQ +++ + FA ++AA IR MG F I+
Sbjct: 708 IYTRVKRTLANGISIGDRHYEFLAFGNSQFREHGAYFFAPDAGVSAATIRAWMGQFNHIR 767
Query: 180 NVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVA 239
NVAKYAARLGQ F ++R S +++ +V +G T FSDG+GK+S LA++V
Sbjct: 768 NVAKYAARLGQCFSTTRA---FTGSSVQVATCNDVVRNGFT--FSDGVGKVSKFLAQMVT 822
Query: 240 KNCGFTIYT---PSAFQIRYGGYKGVVAVDPTS-STKLSLRKSMLKYKSESTSLDILANS 295
T PSAFQ R GG KG++ V P ++ +R S K+++ L+I+ S
Sbjct: 823 SQHNIKTLTGESPSAFQFRLGGAKGMLVVSPDPMPQEVHIRPSQQKFETTQAGLEIIRWS 882
Query: 296 KYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALE-LMSSGENT 354
+Y LNRQLI +LS LGI D VF K + ++ + KA L+ + + T
Sbjct: 883 QYSLATLNRQLILVLSALGIPDKVFHSKLNSMLGSFHRVMCNDSKAINLLQKYIDPNQTT 942
Query: 355 NVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLES 414
+L +++ G++ + EPF ML+ +++ +L L+ + +I I G ++G +DETG L+
Sbjct: 943 LILAQMVSDGFRQNEEPFANTMLELWKSWHLKHLKEKAKIAIDQGANLLGVMDETGVLKG 1002
Query: 415 ---------GQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLR 465
G + Q A+ F+ +GE V+EG ++A+NP LHPGD+RV+R
Sbjct: 1003 YFKNTLPRRGASYAQKLAALPEIFVQICRLEGNGEYEVIEGLCILARNPSLHPGDIRVVR 1062
Query: 466 AVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPP-MDYTP 524
AV+ P L + D VV P G + + CSG DLDGD Y + WD +LIP F MDY
Sbjct: 1063 AVNRPELKGLRDVVVLPQTGDQDIASMCSGGDLDGDDYLIIWDPDLIPTRWFVECMDYKG 1122
Query: 525 APEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTI 584
+ L D+T++++ +F Y+ ND L I +AH+ AD P +C+ LA+L +
Sbjct: 1123 SKAPDLDHDVTVDEITSFFVTYMKNDCLPRIAHAHLAWADRLPRGVWEEKCIRLAQLHSD 1182
Query: 585 AVDFSKTGVAATIPSGLRVEIYPDFMEKQDK---TCYESQRVIGKLYRAVKDIAPPTATI 641
AVD++K+G A + L + +P FMEK+ K + Y+S +++G+LY AV + P +
Sbjct: 1183 AVDYNKSGAHARMARSLDPKFWPHFMEKRFKRPSSIYKSTKILGQLYDAV--VTP--NFV 1238
Query: 642 KSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIM 701
K + ++ + E YI A + K E+D + +M Y I TE E+ S ++
Sbjct: 1239 PKLGKPFDSRILESPL-ASASETYIEYARELKAEFDMNMRQIMAQYEINTEFEVWSTFVL 1297
Query: 702 E---MAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESDSSH-EDVYAKASAWYHVAYH 757
+ + + + DL I+ ++ R + ++ + H ++ A A Y V
Sbjct: 1298 RHGFVIRDYKMQEDLGRIVGTLR------RGFRHQCYDKVGRHGGNISALVIAMYRVTQE 1351
Query: 758 --PSYWGRYKEEGMNRTH------------FLSFPWCIHDKLIEIKRGKQR 794
+ ++E + R +SFPW D L ++ G+ R
Sbjct: 1352 QVAAALEAQRKEALQREDLSVVEVSSTELPLISFPWIFPDVLGDVATGRAR 1402
>gi|156379597|ref|XP_001631543.1| predicted protein [Nematostella vectensis]
gi|156218585|gb|EDO39480.1| predicted protein [Nematostella vectensis]
Length = 523
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 212/535 (39%), Positives = 304/535 (56%), Gaps = 23/535 (4%)
Query: 168 IRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGI 227
IR MGDF I+ V Y +R+GQ F +S + + + IE + +++ + +Y F+DGI
Sbjct: 1 IRRWMGDFSSIRCVGTYVSRMGQCFSTSLDTVGITVDGIECLEKDDIQTEEKSYTFTDGI 60
Query: 228 GKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSES 286
G IS++LA V G + PSAFQIRY G KGV+AVD + K L R SM K++S
Sbjct: 61 GGISSQLARKVTIKIG-KDFIPSAFQIRYAGCKGVLAVDKSLGEKQLFCRPSMRKFQSSH 119
Query: 287 TSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALE 346
L++L S+ Q +LN Q+I LLS LGI D VF + + L L D A+
Sbjct: 120 RRLEVLQTSRPQAVYLNHQVIMLLSNLGISDDVFMSLLEKTLDNLGGTLLD---ERLAMR 176
Query: 347 LMSSGENTNV-LKELLMCGYKPDVEPFLLMMLQTFRASNLLEL--RTRTRIFIQNGRAMM 403
+SS + ++L G VEPF + L++L + R ++ +++ R MM
Sbjct: 177 QLSSAVKRGISYRDLFDAGVHLTVEPFFRSLNAAVYRDRLMQLLMKARMQLPLESARLMM 236
Query: 404 GCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELG---VVEGKVVVAKNPCLHPGD 460
G +DETG LE GQVFVQ SA+ ++ +++ EL V++G VVV +NPCLHPGD
Sbjct: 237 GVVDETGVLEYGQVFVQYSAAS-----NDPRSDKEFELSDKRVLKGPVVVTRNPCLHPGD 291
Query: 461 MRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ---F 517
+R L A+D P L H+VDCVVFP G+RPH +E +G DLDGD+YFVCW LIP + +
Sbjct: 292 VRRLVAIDTPKLRHLVDCVVFPKTGQRPHPSEMAGGDLDGDLYFVCWYKPLIPSQEISLY 351
Query: 518 PPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLE 577
PMDY P++ ++T D+ +Y DYI D LGVI N+H AD +S +CL
Sbjct: 352 DPMDYKAPPKREDRTEITSADMTQYIVDYIRMDILGVIDNSHKALADKLKKGVQSEECLF 411
Query: 578 LAKLSTIAVDFSKTGVAATIPSGLRV-EIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAP 636
LA+ + AVD KTG + +GL++ + YPDFM K DK Y S++++GKLYR+ +
Sbjct: 412 LAEAHSYAVDAPKTGQWPDL-NGLKLPKSYPDFMMKTDKPTYRSKKLLGKLYRSCRSFK- 469
Query: 637 PTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKT 691
S KE+ D ++ V G+ ++ +A EY RL ++M YGI T
Sbjct: 470 -KLAEDSAPKEITKPCLDPNLLVAGYRRFLDEAKNVYQEYCLRLDHIMGIYGINT 523
>gi|19114207|ref|NP_593295.1| RNA-directed RNA polymerase Rdp1 [Schizosaccharomyces pombe 972h-]
gi|59800170|sp|O14227.1|RDR1_SCHPO RecName: Full=RNA-dependent RNA polymerase 1; Short=Protein rdp1
gi|2330856|emb|CAB11093.1| RNA-directed RNA polymerase Rdp1 [Schizosaccharomyces pombe]
Length = 1215
Score = 345 bits (884), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 243/785 (30%), Positives = 402/785 (51%), Gaps = 75/785 (9%)
Query: 51 IYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLIS 110
I++ K+ VTP+ + + NRV+R++ D + F+R+ DE + +
Sbjct: 452 IHIKKLYVTPTTLRIVEDSLEAGNRVIRNFKDFANRFMRVQITDEYYKQ-------KIRG 504
Query: 111 STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRE 170
++ R+ +Y R+ L GI +G++ +E LAF NSQ++++ + FAS +L A IRE
Sbjct: 505 GSDGFRNEKLYSRIQQLLTYGIKVGNQIYEFLAFGNSQLREHGAYFFASGSDLNAKQIRE 564
Query: 171 SMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGI--TYCFSDGIG 228
MGDF +I +V+KYAAR+GQ F +++E D+ ++DD + +CF+DG+G
Sbjct: 565 WMGDFSEINSVSKYAARMGQCFSTTKEI-------NRFCVDISLQDDIVRNNHCFTDGVG 617
Query: 229 KISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSL--------RKSML 280
S + ++ PSAFQ R GGYKGV+++ P TKL R+S
Sbjct: 618 MASLSVIRRLSLEVKNHDMFPSAFQFRMGGYKGVLSLAP--PTKLEYHQGNLVFPRRSQD 675
Query: 281 KYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLK 340
K+KS ++L+++ S++ LN QLITLL LG+ VF + R +++++ + K
Sbjct: 676 KFKSFHSTLEVIKISRFSNAHLNMQLITLLEGLGVEKTVFLELTRSQLSKMNESINSKQK 735
Query: 341 AHEAL-ELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNG 399
+ L + + +T ++ + + G+ + F +L + L ++ + ++ + G
Sbjct: 736 SILMLRDNVDEYHSTLIIADFIQAGFLERDDAFTENLLNLYYEWVLRLIKEKQKVSVPKG 795
Query: 400 RAMMGCLDETGTLESG---------QVFVQCSASRRREFLDNSCNNRSGELG-----VVE 445
++G DETGTL+ ++F+Q + D S + S G V+
Sbjct: 796 AYLLGVADETGTLKGHYDDAVLSVPEIFIQIT--------DTSTSFGSYSTGKLKTRVIV 847
Query: 446 GKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFV 505
G +VA+NP LHPGD+RV +AV L H+ + +VFP G R CSG DLDGD Y V
Sbjct: 848 GLCIVARNPSLHPGDVRVCKAVRCDELMHLKNVIVFPTTGDRSIPAMCSGGDLDGDEYTV 907
Query: 506 CWDHELIPPL-QFPPMDYTPAPEK---VLARDMTIEDVEEYFADYIVNDSLGVICNAHVV 561
WD L+P + +PP+ +P+K L I+ V+E+F +YI DSLG+I NA
Sbjct: 908 IWDQRLLPKIVNYPPL-LESSPKKSIDFLEGKPLIDSVKEFFVNYIKYDSLGLISNAWKA 966
Query: 562 HA---DLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCY 618
A D P+ N CLELA++ + AVDF+K+GVA + + + YPDFM+K +
Sbjct: 967 WAHDHDNNPEGIFGNVCLELAEMHSKAVDFAKSGVACKMQAKYHPKRYPDFMQKTKTRSF 1026
Query: 619 ESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFE-DYITDAFKYKTEYD 677
S+ +GK++R + ++ + YD M++ F+ +Y+ A + K YD
Sbjct: 1027 RSETAVGKIFRYAARFQRESGRPATYN-PIMNTVYDPCMKLPRFKTEYLNVAEEVKKHYD 1085
Query: 678 NRLGNLMDYYGIKTEAEILSGCIM---EMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKK 734
N L ++M + I TE E+ + I+ ++AK+ ++ E + F LKK+ + +K
Sbjct: 1086 NDLRSIMARFDISTEYEVYTAFILFKDDLAKTVNEYGLREEVSFQFDLLKKKYTQEYLEK 1145
Query: 735 ----NES--DSS--HEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFL-SFPWCIHDKL 785
N+S DSS E + + +A Y V Y R K G T L SFP+ +L
Sbjct: 1146 CALSNQSAFDSSEYEERINSAVAATYDVTYDQ----RVKSVGNGTTEVLISFPYLFSSRL 1201
Query: 786 IEIKR 790
++ R
Sbjct: 1202 CQLSR 1206
>gi|339242799|ref|XP_003377325.1| RNA dependent RNA polymerase family protein [Trichinella spiralis]
gi|316973886|gb|EFV57430.1| RNA dependent RNA polymerase family protein [Trichinella spiralis]
Length = 1417
Score = 340 bits (871), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 249/774 (32%), Positives = 404/774 (52%), Gaps = 75/774 (9%)
Query: 51 IYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLIS 110
+ V KV++TP++V S P+ +SNR++R + ++ LR+ F DE ++ ++ S
Sbjct: 396 VSVRKVVITPTRVLLSVPDKMMSNRILRQFGSDLA--LRVIFRDEGGTRIPASKFSL--- 450
Query: 111 STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRE 170
T++ + V + + G+ IG + ++ L +SNSQ++D+ + +AS ++ +IR
Sbjct: 451 -------TSLKQIVTTVMMKGLAIGPRLYQFLGWSNSQLRDHGCYFYASTEQVNVEEIRR 503
Query: 171 SMGDFRDIKNVAKYAARLGQSFGSSRE--ALHVDSSDIEIIPDVEVEDDGITYCFSDGIG 228
MGDF I++V K +R+GQ F + A+ + E++ + +++ +CFSDGIG
Sbjct: 504 WMGDFSSIRSVPKLMSRMGQCFTQAFAITAIPFNPDSKEVLIETDIQSSDSKFCFSDGIG 563
Query: 229 KISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT--SSTKLSLRKSMLKYKSES 286
++S +LAE VA+ PSAFQIRY G+KG++ VDP K+ R+SM K+ +E
Sbjct: 564 RMSTKLAEEVAERLELWP-VPSAFQIRYAGFKGMLCVDPRLDGDVKMVFRQSMHKFHTEG 622
Query: 287 T-SLDILANSKYQPC--FLNRQLITLLSTLGIRDHV---------FEKKQREGVAQLDAI 334
+L+I+ +S QPC LNR LI +L + ++ V + + + +L +
Sbjct: 623 AHTLEIVKHS--QPCEVNLNRPLIMILDQVAFKEGVPVNGRVQNRIMQLLDQQICELSQM 680
Query: 335 LTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRI 394
L +A L E ++L G++ EPF ML + E R +I
Sbjct: 681 LLFEDQAKSVLSATMHSEMN--FEKLADAGFRFTEEPFFRNMLLACYKFKVKEKLFRMKI 738
Query: 395 FIQN--GRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAK 452
I GR M G +DE G L GQVF+QCSA+ R D V+ GKV+V K
Sbjct: 739 EIDPSLGRTMYGVMDELGLLHPGQVFIQCSANILRPGEDKR---------VITGKVMVTK 789
Query: 453 NPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI 512
+P + PGD+R+L AVD+ H++ D +VFP G RP T++ +GSDLDGD Y V WD EL+
Sbjct: 790 SPSVVPGDVRILTAVDLEIYHYLNDVIVFPKIGYRPVTDQMAGSDLDGDEYAVIWDEELM 849
Query: 513 PPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARS 572
+P M Y + D+T + + ++F YI +DS+G I AH+V +D
Sbjct: 850 FCNNYPAMLYEKVISSEIDGDITSDKMVDFFLHYICSDSIGRIAIAHLVASDSYGIFDDV 909
Query: 573 NQCLELAKLSTIAVDFSKTGVAATIPSGLRVEI---YPDFMEKQDKTCYESQRVIGKLYR 629
+ C +A+ ++AVDF K+GV T P EI YPD++ K + Y S+ ++G LYR
Sbjct: 910 SNC--IARKHSMAVDFPKSGV--TPPKLENDEIPLKYPDYIPKCYNSLYRSKWLLGSLYR 965
Query: 630 AVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGI 689
V + S ++V D +++ +++ A Y + L +L+D YGI
Sbjct: 966 KVYMLNSIAEL--SLARKVTTGKSDPHLKIAEAKNFEEKARAIFQRYKSELHSLLDEYGI 1023
Query: 690 KTEAEILSGCIMEM-AKSFDKKRD------LEAII-FAVKSLKKEARAWFNKKNESDSSH 741
+ E ++++G I +M ++ D +RD E ++ + L+K+ + F + S S
Sbjct: 1024 ENEFQLITGKITKMHSRLSDGERDDFSYYNTEKVLKVRLGMLQKKYKKLFVSQFSSVVSK 1083
Query: 742 E------DVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIK 789
E +V A ASAWY VAY + E NRT LSFPW + + L+++K
Sbjct: 1084 EQLANYTEVQAAASAWYSVAYRDA-------EISNRTA-LSFPWLVWEVLLDLK 1129
>gi|164429758|ref|XP_964248.2| hypothetical protein NCU02178 [Neurospora crassa OR74A]
gi|157073607|gb|EAA35012.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 1049
Score = 338 bits (866), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 194/531 (36%), Positives = 301/531 (56%), Gaps = 22/531 (4%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISS 111
+V +V +TP+++YFS P + +NRV+R + D F+R+ F DE VL I S
Sbjct: 533 WVRRVTITPTRIYFSTPCVEPTNRVIRQWKHAQDYFIRIQFTDE--------VLEGRIKS 584
Query: 112 TNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRES 171
E ++ RV L G+ +G ++ LAF NSQ+++ +MF + LT +R
Sbjct: 585 GEAE--LPLFLRVYRVLEKGVAMGPWHWKFLAFGNSQIREAGAFMFCEQSNLTGDMMRAW 642
Query: 172 MGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKIS 231
MG F IK +AKYAARLGQ F ++R + + I IPDVE DG +CF+DG+GKIS
Sbjct: 643 MGRFSHIKVIAKYAARLGQCFSTTRLVPGIPAPRIVTIPDVE--KDG--FCFTDGVGKIS 698
Query: 232 AELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP-TSSTKLSLRKSMLKYKSESTSLD 290
LA+IVA + PSA+Q R GG KGV+ P ++ +RKS K+ +E L+
Sbjct: 699 PLLAKIVAHDWSIDP-PPSAYQFRMGGCKGVLVTWPDVKGMEVHIRKSQEKFVAEFNGLE 757
Query: 291 ILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALE-LMS 349
++ S++ LNRQ+I +LS+LG+ D VF + ++ +A + D KA L+ +
Sbjct: 758 VVRCSQFSTATLNRQIIAVLSSLGVPDQVFVDMMEQQLSDFNAAMEDKQKATAILKTFID 817
Query: 350 SGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDET 409
T ++ E+L G+ EPF+ +LQ +R+ ++ L+ + R+ ++ ++GC+DET
Sbjct: 818 ENHMTPIIAEMLAYGFMGSQEPFVRTLLQLWRSWSIKTLKEKARLNVEKSAFVLGCVDET 877
Query: 410 GTLESGQVFVQ----CSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLR 465
GTL+ ++ S+ + + ++ +G V+ G VV +NP LHPGD+RV+
Sbjct: 878 GTLKGHMKVIEDWKDVSSEKLPQIFLQIPDDVNGGYRVITGTCVVGRNPSLHPGDIRVVE 937
Query: 466 AVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ-FPPMDYTP 524
AVDVP+L H+ D VVFP G R + CSG DLDGD +FV WD LIP + PPM P
Sbjct: 938 AVDVPALRHLRDVVVFPLTGDRDVPSMCSGGDLDGDDFFVIWDPLLIPKERSHPPMISEP 997
Query: 525 APEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQC 575
K LA + T+ ++ +F Y+ ++L +I +AH+ AD E + +S +C
Sbjct: 998 IAGKELATEPTVNNLITFFVLYMKYNNLPLIAHAHLATADAEVEGVKSPKC 1048
>gi|118386404|ref|XP_001026321.1| RNA dependent RNA polymerase family protein [Tetrahymena thermophila]
gi|89308088|gb|EAS06076.1| RNA dependent RNA polymerase family protein [Tetrahymena thermophila
SB210]
Length = 1439
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 241/819 (29%), Positives = 384/819 (46%), Gaps = 150/819 (18%)
Query: 47 DDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS 106
D +I +V +TPS + ++ E+ LSNRV+R + D D+F+R +F D+ L+
Sbjct: 546 DVKVIATRRVSITPSGLIYNLKELELSNRVLRIFQDSTDSFIRGTFQDDSLEN------- 598
Query: 107 PLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAA 166
+H R + + +F +S SQ++++S W F L
Sbjct: 599 --------AKHMKYVSRYFRQKLKSFKVLNWEFINFGWSASQLRNSSSWFFHETEVLKKQ 650
Query: 167 DIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDV-------EVEDDG- 218
D+ +GDF I AK +AR+GQ F SS + + +IE I D+ EV+ +G
Sbjct: 651 DVITRIGDFSGINPPAKKSARIGQCFSSSTPYILKERPNIEFIDDITTPSAVQEVDANGN 710
Query: 219 ITY------CFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK 272
I Y F+DGIG IS +L ++ + + A Q+RYGG KGV+ +D S K
Sbjct: 711 ICYFRQKKKVFTDGIGTISQDLIRKISDHLN--AFFMCAIQVRYGGAKGVLTIDYKSDKK 768
Query: 273 --LSLRKSMLKYK----SESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQRE 326
+ LR+SM+KYK + +DIL +KY+ +LNRQ+I LL +LGI + F + Q+E
Sbjct: 769 NTIQLRESMIKYKITDEQDELIIDILDRNKYRFGYLNRQVIILLRSLGIENEQFIQAQQE 828
Query: 327 GVAQLDAILTDPLKAHEALELMSSGEN---------TNVLKELLMCGYKPDVEPFLLMML 377
+ +L+ LK L ++ + T++L+ + + F ++
Sbjct: 829 YIEELNK---SALKDASIFTLFNTDYSKDGTRLFPITHLLRSMQTSRIDMAQDIFCKGVI 885
Query: 378 QTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNR 437
T + LR ++ IF++ +MG +DE LE +VF S + F
Sbjct: 886 HTLKKRGFYILRKKSNIFLKKSARLMGVIDEYNVLEQDEVFAYISQDSEKSFFQ------ 939
Query: 438 SGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHH------------MVDCVVFPAKG 485
VEG V+V KNPCLHPGD+R L+AV + ++ + + ++FP KG
Sbjct: 940 ------VEGDVIVVKNPCLHPGDIRKLKAVTLETISQRLGEGKINPFKKLRNILIFPQKG 993
Query: 486 KRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTP---APEKVLARDM-------- 534
K P T++ +GSDLDGD YF+CWD IP Q P +Y + +K ++++
Sbjct: 994 KEPITSQIAGSDLDGDCYFICWDQRFIPLEQKEPFNYDEDDNSQKKQISQEQYDIEISKK 1053
Query: 535 -------------TIEDVEE---YFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLEL 578
I+D E+ +F D+I N++LG I N+H+V AD P A +CL+L
Sbjct: 1054 PNTQFKTKNPVREVIDDNEQMLDFFIDFINNENLGKIDNSHLVFADKSPLYAEDPKCLKL 1113
Query: 579 AKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKD----- 633
A L AVD++KTG++ +P L ++ YPDFMEK DK Y+SQ ++G LYR VKD
Sbjct: 1114 ASLHAQAVDYAKTGISPQLPKNLAIKEYPDFMEKDDKPSYQSQSILGILYRQVKDQYEKH 1173
Query: 634 -------------------IAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKT 674
PPT F E+ D E I A +
Sbjct: 1174 CKNDIEGDRSQTFIDNNLIFNPPT-----FVNEIV----DEQENKTYLEQEIDFAIEANN 1224
Query: 675 EYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKR------------DLEAI-----I 717
+++ + NL ++G + E EI +G ++ K KK+ L AI +
Sbjct: 1225 QWNIEINNLKQFFGAQNEFEIYTGNFSKLIKVERKKKMSAEIVQQRILSTLLAIKNRFEL 1284
Query: 718 FAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAY 756
K+L ++ ++++ N + +A+ WY + Y
Sbjct: 1285 LFFKNLDEDRDRFYDETNRKKYYSKKCKIRATLWYIICY 1323
>gi|111610628|gb|ABH11712.1| RNA-dependent RNA polymerase [Tetrahymena thermophila]
Length = 1434
Score = 336 bits (862), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 241/819 (29%), Positives = 384/819 (46%), Gaps = 150/819 (18%)
Query: 47 DDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS 106
D +I +V +TPS + ++ E+ LSNRV+R + D D+F+R +F D+ L+
Sbjct: 541 DVKVIATRRVSITPSGLIYNLKELELSNRVLRIFQDSTDSFIRGTFQDDSLENA------ 594
Query: 107 PLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAA 166
+H R + + +F +S SQ++++S W F L
Sbjct: 595 ---------KHMKYVSRYFRQKLKSFKVLNWEFINFGWSASQLRNSSSWFFHETEVLKKQ 645
Query: 167 DIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDV-------EVEDDG- 218
D+ +GDF I AK +AR+GQ F SS + + +IE I D+ EV+ +G
Sbjct: 646 DVITRIGDFSGINPPAKKSARIGQCFSSSTPYILKERPNIEFIDDITTPSAVQEVDANGN 705
Query: 219 ITY------CFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK 272
I Y F+DGIG IS +L ++ + + A Q+RYGG KGV+ +D S K
Sbjct: 706 ICYFRQKKKVFTDGIGTISQDLIRKISDHLN--AFFMCAIQVRYGGAKGVLTIDYKSDKK 763
Query: 273 --LSLRKSMLKYK----SESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQRE 326
+ LR+SM+KYK + +DIL +KY+ +LNRQ+I LL +LGI + F + Q+E
Sbjct: 764 NTIQLRESMIKYKITDEQDELIIDILDRNKYRFGYLNRQVIILLRSLGIENEQFIQAQQE 823
Query: 327 GVAQLDAILTDPLKAHEALELMSSGEN---------TNVLKELLMCGYKPDVEPFLLMML 377
+ +L+ LK L ++ + T++L+ + + F ++
Sbjct: 824 YIEELNK---SALKDASIFTLFNTDYSKDGTRLFPITHLLRSMQTSRIDMAQDIFCKGVI 880
Query: 378 QTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNR 437
T + LR ++ IF++ +MG +DE LE +VF S + F
Sbjct: 881 HTLKKRGFYILRKKSNIFLKKSARLMGVIDEYNVLEQDEVFAYISQDSEKSFFQ------ 934
Query: 438 SGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHH------------MVDCVVFPAKG 485
VEG V+V KNPCLHPGD+R L+AV + ++ + + ++FP KG
Sbjct: 935 ------VEGDVIVVKNPCLHPGDIRKLKAVTLETISQRLGEGKINPFKKLRNILIFPQKG 988
Query: 486 KRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTP---APEKVLARDM-------- 534
K P T++ +GSDLDGD YF+CWD IP Q P +Y + +K ++++
Sbjct: 989 KEPITSQIAGSDLDGDCYFICWDQRFIPLEQKEPFNYDEDDNSQKKQISQEQYDIEISKK 1048
Query: 535 -------------TIEDVEE---YFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLEL 578
I+D E+ +F D+I N++LG I N+H+V AD P A +CL+L
Sbjct: 1049 PNTQFKTKNPVREVIDDNEQMLDFFIDFINNENLGKIDNSHLVFADKSPLYAEDPKCLKL 1108
Query: 579 AKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKD----- 633
A L AVD++KTG++ +P L ++ YPDFMEK DK Y+SQ ++G LYR VKD
Sbjct: 1109 ASLHAQAVDYAKTGISPQLPKNLAIKEYPDFMEKDDKPSYQSQSILGILYRQVKDQYEKH 1168
Query: 634 -------------------IAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKT 674
PPT F E+ D E I A +
Sbjct: 1169 CKNDIEGDRSQTFIDNNLIFNPPT-----FVNEIV----DEQENKTYLEQEIDFAIEANN 1219
Query: 675 EYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKR------------DLEAI-----I 717
+++ + NL ++G + E EI +G ++ K KK+ L AI +
Sbjct: 1220 QWNIEINNLKQFFGAQNEFEIYTGNFSKLIKVERKKKMSAEIVQQRILSTLLAIKNRFEL 1279
Query: 718 FAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAY 756
K+L ++ ++++ N + +A+ WY + Y
Sbjct: 1280 LFFKNLDEDRDRFYDETNRKKYYSKKCKIRATLWYIICY 1318
>gi|367021614|ref|XP_003660092.1| hypothetical protein MYCTH_2297939 [Myceliophthora thermophila ATCC
42464]
gi|347007359|gb|AEO54847.1| hypothetical protein MYCTH_2297939 [Myceliophthora thermophila ATCC
42464]
Length = 1033
Score = 332 bits (850), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 199/541 (36%), Positives = 297/541 (54%), Gaps = 24/541 (4%)
Query: 46 LDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVL 105
+ D + + +VTP+++YFS P + SNRVVR Y D+FLR+ F DE LD
Sbjct: 506 IPDYCALIRRAIVTPTRMYFSTPTVETSNRVVRRYQHIQDHFLRVQFTDELLDGR----- 560
Query: 106 SPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPE--- 162
I + +R +Y RV + GI +G ++ LAF NSQ+++++ + F PE
Sbjct: 561 ---IRACEVDRDDELYARVCRVMTQGIRMGKWHWKFLAFGNSQIRESAAFFFCE-PEDGS 616
Query: 163 LTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYC 222
+T IR+ MG+F I +VAK AARLGQ F ++R + S I IPDVE E+ +C
Sbjct: 617 VTCDSIRQWMGNFDHITSVAKLAARLGQCFSTTRLLHCISSPRIARIPDVESENG---FC 673
Query: 223 FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLK 281
F+DGIGKIS LA +VA++ PSA Q R GG KGV+ P T++ +R S K
Sbjct: 674 FTDGIGKISLPLACLVAEDWKLD-RPPSAVQFRMGGCKGVLVQWPNVKGTEIHIRPSQEK 732
Query: 282 YKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKA 341
+ +E L+I+ S++ LNRQ I +LS LG+ D VF +A DA +TD A
Sbjct: 733 FCAEYNGLEIIRCSQFSCATLNRQTILILSCLGVSDEVFIDMMASQIANFDAAMTDKDTA 792
Query: 342 HEALE-LMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGR 400
E L+ + T + +L G+ EPF+ +LQ +R+ ++ L+ + R+ ++ G
Sbjct: 793 VELLDNYVDENLTTTTIASMLRNGFMHTREPFVRTVLQLWRSWSIKALKEKARLVVEQGA 852
Query: 401 AMMGCLDETGTLESGQVFVQCSASRRRE-----FLDNSCNNRSGELGVVEGKVVVAKNPC 455
++GC+DETGTL + ++ R+ F + VV G +V +NP
Sbjct: 853 FVLGCVDETGTLRGYSRATEGQSNVSRDQLPQIFFQVPDRDHRHAYKVVTGLCIVGRNPS 912
Query: 456 LHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP- 514
LHPGD+RV+ AVDVP L H+ D VVFP +G R + CSG DLDGD +FV WD L+P
Sbjct: 913 LHPGDIRVVEAVDVPQLRHLRDVVVFPLRGDRDVPSMCSGGDLDGDDFFVIWDPRLLPAE 972
Query: 515 LQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQ 574
PPM+Y+ + +R + + +F ++ ND L +I +AH+ AD E + A+ +
Sbjct: 973 WGHPPMNYSAPQPPIESRASLAKSLAFFFVLFMKNDRLPLIAHAHLARADYELEGAKHWK 1032
Query: 575 C 575
C
Sbjct: 1033 C 1033
>gi|213407476|ref|XP_002174509.1| RNA-directed RNA polymerase Rdp1 [Schizosaccharomyces japonicus
yFS275]
gi|212002556|gb|EEB08216.1| RNA-directed RNA polymerase Rdp1 [Schizosaccharomyces japonicus
yFS275]
Length = 1213
Score = 332 bits (850), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 246/821 (29%), Positives = 398/821 (48%), Gaps = 80/821 (9%)
Query: 26 EEQYRKYVLS----RRFLTSPAVAL------------DDGLIYVNKVLVTPSKVYFSGPE 69
EEQ R ++ S + F++ P++ L GL V KV +TP+ V
Sbjct: 408 EEQARSFLESTFARKVFVSKPSLELVQNQSSASGKKFTSGLNSVKKVCITPTTVKVMDNS 467
Query: 70 ISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVLSTLR 129
+ NRV+R + D FLR+ +E+ + + S+ + + ++Y RV +
Sbjct: 468 LEAGNRVIRHFSQYNDRFLRIQITEENTKR-------KIRSNPDALKQESVYARVYQLMS 520
Query: 130 NGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAARLG 189
+GI+IG FE LAF NSQ++++ + FAS + +A IR MGDF + ++VAKYAAR+G
Sbjct: 521 HGIIIGKTHFEFLAFGNSQLREHGAYFFASGEDESADSIRNWMGDFSNNESVAKYAARMG 580
Query: 190 QSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTP 249
Q F ++++ L +E D+ D CF+DG+G S + + A P
Sbjct: 581 QCFSTTKD-LKRFQVKVEKRNDIIRNDS----CFTDGVGMASLSVMKRTASEMDNEEMFP 635
Query: 250 SAFQIRYGGYKGVVAVDPTS------STKLSLRKSMLKYKSESTSLDILANSKYQPCFLN 303
SA Q R GGYKGV+++ P + + R S K+KS T L+++ S++ LN
Sbjct: 636 SAVQFRMGGYKGVLSLAPPTLLEYHKGNLVFTRDSQEKFKSNFTVLEVIKVSRFSHAHLN 695
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL-ELMSSGENTNVLKELLM 362
QLITLL LG+ +F + + +L L DP +A L + +T +L +L+
Sbjct: 696 MQLITLLEGLGVPTSLFVDLAKNELKELTISLKDPRRAVTLLRNHVDEYRSTLILADLIA 755
Query: 363 CGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESG------- 415
CG+ + F ++ + + ++ + R+ ++ G +MG DETGTL+
Sbjct: 756 CGFMQRNDSFTKNLINLYFEWVVRTIKEKQRLRVKEGAFLMGVADETGTLKGHYNDSVLP 815
Query: 416 --QVFVQCSASRRREFLDNSCNNRSGELG--VVEGKVVVAKNPCLHPGDMRVLRAVDVPS 471
+VF+Q + + N+ +G++ ++ G VV +NP LHPGD+RV RAV
Sbjct: 816 IPEVFIQITDPSK-----NADATVTGKIKTTIIMGLCVVVRNPALHPGDVRVCRAVRCNE 870
Query: 472 LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLA 531
L H+ + +VFP G T C+G DLDGD Y V WD +P + ++Y P +
Sbjct: 871 LLHLKNVIVFPTTGDLSVTEMCAGGDLDGDEYTVIWDPNFLPKI----VNYPPYIDNAAK 926
Query: 532 RDMT-------IEDVEEYFADYIVNDSLGVICNAHVVHAD---LEPDKARSNQCLELAKL 581
R +T IE ++ +F YI +SLG+I N+ A PD + CL+L+ L
Sbjct: 927 RILTFKEGVPPIESIKAFFVRYIKYESLGLISNSWKAWAHDRVNNPDGIFGSICLKLSAL 986
Query: 582 STIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATI 641
+ AVD+ K+GVAA +P R + YPDFMEK+ ++ + + +G++YR A +
Sbjct: 987 HSTAVDYPKSGVAAIMPQEYRPKAYPDFMEKEFRS-FPAMTAVGEIYRYAS--AFQSQYF 1043
Query: 642 KSFTKEVAMQSYDTDMEVDGF-EDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCI 700
K YD M++ + + YI A K K +YDN L ++M ++ IKTE EI + +
Sbjct: 1044 KKAYSSKLNNDYDETMKLPPYKQQYIEIAKKSKEQYDNDLRSVMTHFDIKTEYEIFTSFL 1103
Query: 701 M---EMAKSFDKKRDLEAIIFAVKSLKKE------ARAWFNKKNESDSSHEDVYAKASAW 751
+ + ++ E I F +LKK A + D S ++ + +
Sbjct: 1104 LLNKDKETIINEYALREEIAFQFSALKKHHTENYFALCGLAPSSVKDMSKQEYEQRIDSA 1163
Query: 752 YHVAYHPSYWGRYK--EEGMNRTHFLSFPWCIHDKLIEIKR 790
AY + + EG + SFP+ H L I R
Sbjct: 1164 VAAAYDVMHEEKIAAIAEGTDDLVLTSFPYIFHKVLCRIAR 1204
>gi|268530338|ref|XP_002630295.1| C. briggsae CBR-RRF-3 protein [Caenorhabditis briggsae]
Length = 1766
Score = 328 bits (842), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 248/841 (29%), Positives = 405/841 (48%), Gaps = 93/841 (11%)
Query: 7 ALETLFHLRECCYEPVRWLE-EQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYF 65
A T++ R+ YE R L E + L+R L + V KV+V+PS+V
Sbjct: 643 AFSTMYKTRKVQYE--RLLNGESLQDVGLAR--------PLPKNCVSVAKVIVSPSRVLL 692
Query: 66 SGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVL 125
PE+ + NRVVR + D LR F D++L +L + + + + E +
Sbjct: 693 MAPEVMMVNRVVRRFGP--DYALRCVFRDDNLGRL---AIRDFSINNIDHMSNVVTEAIY 747
Query: 126 STLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPEL-------TAADIRESMGDFRDI 178
+TL+NGI + D+ + L +SNSQ++D +++A R + T DIR MGDFR+
Sbjct: 748 NTLKNGIQVADRHYSFLGWSNSQMRDQGCYLYAPRVDPISGKVSGTVEDIRVWMGDFREA 807
Query: 179 KNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIV 238
+V K +R+GQ F ++ + + + PD+E G +CFSDG G+IS +LA +
Sbjct: 808 VSVPKMMSRMGQCFTQAQPTVKLARHHWLVEPDME-GGPGNKFCFSDGCGRISYKLAGQI 866
Query: 239 AKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-----SSTKLSLRKSMLKY-----KSESTS 288
+ P+ FQ+R+ G+KG++ +DPT + K+ RKS K+ + S
Sbjct: 867 TRKLKLK-EIPACFQVRFKGFKGILVIDPTIDDIINMPKVIFRKSQQKFGEGGGDQQDES 925
Query: 289 LDILANSKYQPCFLNRQLITLLSTLG----------IRDHVFEKKQREGVAQLDAILTDP 338
L+++ + P LNR +T+L + I + V +RE + + +L +
Sbjct: 926 LEVVKYAMPSPVCLNRPFVTILDQVSKKQSAKCHQRITNRVHYYLERELSSLSNMLLNEN 985
Query: 339 LKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQN 398
A E + + + N+ + G++ V+P + ML N++ ++ +IF+
Sbjct: 986 QAAEELVNRTNLPIDWNLASK--RAGFQLSVDPLIRSMLFAIYRYNIIHHISKAKIFLPP 1043
Query: 399 --GRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCL 456
GR+M G +DETG L+ GQVF+Q S + R+ S E + GKV++ KNPC
Sbjct: 1044 SLGRSMYGVVDETGLLQYGQVFIQYSPTIRQT---------SPEPLLKTGKVLITKNPCH 1094
Query: 457 HPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ 516
PGD+RV AV P+L H+VD VVFP G RPH +E +GSDLDGD Y + WD E++
Sbjct: 1095 VPGDVRVFDAVWQPALAHLVDVVVFPRHGPRPHPDEMAGSDLDGDEYSIIWDQEMLLDYN 1154
Query: 517 FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCL 576
M + + + ++ T +D+ E+F Y+ DS+G + NAH+V+ADL S C
Sbjct: 1155 ETAMVFPSSQAQEEDKEPTTDDMVEFFLRYMQQDSIGRMSNAHLVYADLH--GLFSENCA 1212
Query: 577 ELAKLSTIAVDFSKTGVAATIPSGL-RVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIA 635
+A+ +AVDF K+GV A +G + ++ PD+M K Y S + G+L+R + +
Sbjct: 1213 SIAQKCAVAVDFPKSGVPAEPLTGFEQCDVTPDYMMSGGKPMYYSASLNGQLHRKARKVE 1272
Query: 636 PPTATIKS----FTKEVAMQSYDTDMEV-DGFEDYITDAFKYKTEYDNRLGNLMDYYGIK 690
+S F E D +V G E + + EY +R+ L+D YGI+
Sbjct: 1273 EVLEEYESKGSIFEGEYDKMICPDDADVFFGSEPKLVQTMNIRDEYIDRMQQLLDEYGIE 1332
Query: 691 TEAEILSGCIMEMAKSFDKKRD-------LEAIIFAVKSLKKEARAWFNKKNESDSSH-- 741
EA ++SG + + +RD + + + L RA F ++ + +H
Sbjct: 1333 DEASVVSGHAASIKRLAGMERDDYSFYHTDKVVELRYEKLYSVFRAKFFEEFGGEEAHTV 1392
Query: 742 -----------EDVYAKASAWYHVAY-HPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIK 789
++ K WY AY P K+ + S PW D L +++
Sbjct: 1393 NDGKGSRVVCIPAMHEKVRQWYFAAYVQP------KKNKTGKYIGQSLPWVAWDVLCDLR 1446
Query: 790 R 790
R
Sbjct: 1447 R 1447
>gi|301106324|ref|XP_002902245.1| RNA-dependent RNA Polymerase1 (RDR1) [Phytophthora infestans T30-4]
gi|262098865|gb|EEY56917.1| RNA-dependent RNA Polymerase1 (RDR1) [Phytophthora infestans T30-4]
Length = 2680
Score = 328 bits (842), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 263/780 (33%), Positives = 399/780 (51%), Gaps = 83/780 (10%)
Query: 40 TSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDK 99
TSP++ + ++Y KV+VTPS++ + P+ + SNRV R + E NF+ + F D+++++
Sbjct: 1091 TSPSLN-PESIVY--KVIVTPSRIVYCPPDPAPSNRVFRHWGSE--NFMYVYFRDDNMER 1145
Query: 100 LYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVI----GDKKFETLAFSNSQVKDNSMW 155
L + R TI ER+ + L+NGI I G KF L S SQV+++S
Sbjct: 1146 L-------------DFRSVTILERIRNVLKNGIEIPHVSGGLKFRFLGCSLSQVRNSS-- 1190
Query: 156 MFASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVE 215
A L +R +GD + + AKY RLGQ+F S+++ V S ++ P ++E
Sbjct: 1191 --AIFTRLDHHAVRLWIGDLSLLTSPAKYLKRLGQAFSSTKDTFEVSRSVLDN-PVDDIE 1247
Query: 216 DDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLS- 274
+D Y F+DG G+I AE + + + YTPSAFQ+R GG KGV+ V + +S
Sbjct: 1248 ND--QYVFTDGCGEIGLVGAESIVRELQLS-YTPSAFQVRLGGAKGVLVVSDLGNPDISR 1304
Query: 275 -----LRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVA 329
LRKSM K+ S T L+I+A + +L RQ + +L+ LGI + VF + Q E ++
Sbjct: 1305 EEAVVLRKSMSKFSSNHTMLEIVACAGKSEAYLTRQSVLILNDLGINEDVFMEMQEEFLS 1364
Query: 330 QLDAILTDPLKAHEALELM---SSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLL 386
L +++ A+ L+ + S +VL L K V+ +L + +T L
Sbjct: 1365 DLRSLIASDSGAYFGLKAVLPPSVIWRIDVLVRKLEV--KILVDEYLSSLARTIYHYRLA 1422
Query: 387 ELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEG 446
R RI I GR +MG D TGTLE G+VFVQ S + D N S L ++G
Sbjct: 1423 NTVMRARIPIAKGRTLMGVADFTGTLEYGEVFVQYSDT------DEETGNDSYVL--LDG 1474
Query: 447 -KVVVAKNPCLHPGDMRVLRA-VDVP-SLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVY 503
V V ++PC HPGD+RVLR DVP L + DC+VFP+KG RPH +EC+G DLDGD++
Sbjct: 1475 IDVAVHRSPCHHPGDIRVLRCRTDVPPQLRQLKDCIVFPSKGPRPHPDECTGGDLDGDMF 1534
Query: 504 FVCWDHELIP-------PLQFPP---MDYTPAPEKVLARDMTIEDVE--EYFADYIVNDS 551
V WD LIP P+ F D +P E+ + +D +++ I +D
Sbjct: 1535 VVIWDERLIPSRTQVHEPMAFDEDNGGDTSPRGEEY---HQSTDDAGLIDFYIHSIQDDI 1591
Query: 552 LGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFME 611
LG+ NAH+ D D + + LA++ + VD + I L + YPDFM+
Sbjct: 1592 LGIASNAHLALCDSSNDGSLDDNAKILARICSKQVDSLRAEKDLEIVRNLAPKSYPDFMQ 1651
Query: 612 KQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFK 671
++K Y S++++GK+YR K I T T KS ++ M D V G+ DY+ A
Sbjct: 1652 NKEKPSYPSKKILGKMYRRCKAIFDTTMT-KSVSR---MPIRDDHFLVAGYTDYVEQANL 1707
Query: 672 YKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSF--DKKRDLEAIIFAVKSLKKEARA 729
+Y RL L+ G +TEAE+ +G I+E + D R E A +L+ R+
Sbjct: 1708 LYRQYKLRLRALLLMSGAQTEAELATGMIVEPQSEYKADYFRFGEQCKDAFYALQAGFRS 1767
Query: 730 WFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIK 789
F+ + ++ E++ ASA Y V + ++ T LSFPW + D L IK
Sbjct: 1768 QFDSDTSTFAAGENL-KLASACYFVTH---------DDSDATTRCLSFPWIVIDLLTTIK 1817
>gi|341885460|gb|EGT41395.1| CBN-RRF-3 protein [Caenorhabditis brenneri]
Length = 1736
Score = 327 bits (839), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 244/818 (29%), Positives = 398/818 (48%), Gaps = 110/818 (13%)
Query: 43 AVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYS 102
A L + V KV+VTPS++ PE+ + NR+VR + D LR F D++L +L
Sbjct: 639 AKPLPKNCVQVAKVIVTPSRILLMAPEVMMVNRIVRRFGP--DYALRCVFRDDNLGRL-- 694
Query: 103 TVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPE 162
+ + + + E + +TL+ G+ + D+K+ L +SNSQ++D +++A R +
Sbjct: 695 -AIRDFSVNNIDHLSNIVTESIFNTLKYGVQVADRKYSFLGWSNSQMRDQGCYLYAPRVD 753
Query: 163 L-------TAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVE 215
T +IR+ MGDFR+ +V K +R+GQ F ++ + ++ + PDVE
Sbjct: 754 PATGRVSGTVEEIRKWMGDFREAVSVPKMMSRMGQCFTQAQPTVRLERRHWIVEPDVEGG 813
Query: 216 DDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-----SS 270
G YCFSDG G+IS +LA + + TP+ FQ+R+ G+KG++ +DPT
Sbjct: 814 LSG-KYCFSDGCGRISVKLANHITRILELK-ETPACFQVRFKGFKGILVIDPTIDDIIGM 871
Query: 271 TKLSLRKSMLKY-----KSESTSLDILANSKYQPCFLNRQLITLLSTLG----------I 315
K+ RKS K+ + L+++ + P LNR IT+L + I
Sbjct: 872 PKVIFRKSQQKFGEGGGDQQDEYLEVVKYAMPSPVCLNRPFITILDQVSAKQSASSHRRI 931
Query: 316 RDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLM 375
+ + +RE + + +L + A E + + + N K G++ +P +
Sbjct: 932 TNRIHYYLERELCSLSNMLLNENQAAEELVNRTNLPIDWN--KASKHAGFQLSKDPLIRS 989
Query: 376 MLQTFRASNLLELRTRTRIFIQN--GRAMMGCLDETGTLESGQVFVQCSASRRREFLDNS 433
ML + N++ ++ +IF+ GR+M G +DETG L+ GQVF+Q S S R+
Sbjct: 990 MLFSIYRYNIIHHISKAKIFLPPDLGRSMYGVVDETGLLQYGQVFIQYSQSIRQT----- 1044
Query: 434 CNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNEC 493
S + GKV++ KNPC PGD+RV AV P+L H+VD VVFP G RPH +E
Sbjct: 1045 ----SATPILKTGKVLITKNPCHVPGDVRVFEAVWQPALAHLVDVVVFPRHGPRPHPDEM 1100
Query: 494 SGSDLDGDVYFVCWDHELIPPLQFPPMDY--TPAPEKVLARDMTIEDVEEYFADYIVNDS 551
+GSDLDGD Y + WD E++ M Y + APE+ ++ T +D+ E+F Y+ DS
Sbjct: 1101 AGSDLDGDEYSIIWDQEMLLDYNEEAMIYPSSTAPEE--DKEPTTDDMVEFFLRYLQQDS 1158
Query: 552 LGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAA-TIPSGLRVEIYPDFM 610
+G + NAH+ +ADL C +A +AVDF K+GV A + S + E+ PD+M
Sbjct: 1159 IGRMSNAHLTYADLH--GLFHENCRNIALKCAVAVDFPKSGVPAEPLASFEQCEMTPDYM 1216
Query: 611 EKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDT-----DMEVD----- 660
K Y S R+ G+L+R + + E ++ Y+T + E D
Sbjct: 1217 ATGGKPMYYSPRLNGQLHRKARKV------------EEVLEEYETRGSIFEGEYDKIICP 1264
Query: 661 -------GFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRD- 712
G E + A + EY +R+ L+D YGI+ EA ++SG + + +RD
Sbjct: 1265 DDADVFFGSEAKLVQAMMIRDEYIDRMQQLLDEYGIEDEASVVSGHAASIKRLAGMERDD 1324
Query: 713 -----LEAII-FAVKSLKKEARAWFNKKNESDSSH-------------EDVYAKASAWYH 753
+ I+ + L RA F ++ +++H + + K WY
Sbjct: 1325 YSFYHTDKIVELRYEKLYHVFRAKFFEEFGGEAAHLVNDGSKMRLNCTKAMREKVRQWYF 1384
Query: 754 VAY-HPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIKR 790
V+Y P K+ + S PW + D L +++R
Sbjct: 1385 VSYVQP------KKNKTGKFIGQSLPWVVWDALCDLRR 1416
>gi|151370755|gb|ABS11001.1| RNA-dependent RNA polymerase 1 [Nicotiana clevelandii]
Length = 243
Score = 327 bits (837), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 167/245 (68%), Positives = 192/245 (78%), Gaps = 2/245 (0%)
Query: 101 YSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASR 160
+ST L P S+ N R T IY R+LSTLRNG VIGDK+FE LAFS+SQ++DNS+WMFASR
Sbjct: 1 HSTDLLPRASTGNGIR-TDIYLRILSTLRNGFVIGDKRFEFLAFSSSQLRDNSVWMFASR 59
Query: 161 PELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGIT 220
P LTA DIR+ MG+F+ I+NVAKYAARLGQSFGSSRE L V ++E+IPDV G
Sbjct: 60 PGLTANDIRKWMGEFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVVCSLHGTN 119
Query: 221 YCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSML 280
Y FSDGIGKISA+ A VA CG YTP +FQIRYGGYKGVVAVDP SS KLSLR SML
Sbjct: 120 YIFSDGIGKISADFARRVAIKCGLQ-YTPFSFQIRYGGYKGVVAVDPYSSMKLSLRNSML 178
Query: 281 KYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLK 340
KY+S + LD+L SKYQPC+LNRQL+TLLSTLG++D VFE+KQ E V QLDAIL D LK
Sbjct: 179 KYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDSLK 238
Query: 341 AHEAL 345
A EAL
Sbjct: 239 AQEAL 243
>gi|392890785|ref|NP_495713.2| Protein RRF-3 [Caenorhabditis elegans]
gi|316979926|emb|CAA88315.2| Protein RRF-3 [Caenorhabditis elegans]
Length = 1765
Score = 325 bits (833), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 242/806 (30%), Positives = 393/806 (48%), Gaps = 86/806 (10%)
Query: 43 AVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYS 102
A L + V KV+VTPS++ PE+ + NRVVR + D LR F D++L +L
Sbjct: 669 AKPLPKNCVSVAKVIVTPSRILLMAPEVMMVNRVVRRFGP--DYALRCVFRDDNLGRL-- 724
Query: 103 TVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPE 162
+ + + + E + TL+NGI + D+ + L +SNSQ++D +++A R
Sbjct: 725 -AIRDFSINNIDHMSNIVTEGIYLTLKNGIQVADRVYSFLGWSNSQMRDQGCYLYAPRVN 783
Query: 163 L-------TAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVE-- 213
T DIR MGDFRD +V K +R+GQ F ++ + ++ + PD+E
Sbjct: 784 ALTGEVTGTVEDIRVWMGDFRDAISVPKMMSRMGQCFTQAQPTVRLERHHWIVEPDIEGG 843
Query: 214 VEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT----- 268
VE+ YCFSDG G+IS +LA ++K P+ FQ+R+ G+KG++ +DPT
Sbjct: 844 VEN---KYCFSDGCGRISIKLATHISKILQLK-EVPACFQVRFKGFKGILVIDPTIDDII 899
Query: 269 SSTKLSLRKSMLKYKS-----ESTSLDILANSKYQPCFLNRQLITLLSTLG--------- 314
+ K+ RKS K+ + L+++ + P LNR IT+L +
Sbjct: 900 NMPKVIFRKSQQKFGEGGGELQDEYLEVVKYAMPSPVCLNRPFITILDQVSEKQSASSHR 959
Query: 315 -IRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFL 373
I + V +RE + + ++ + A E + + + N + G++ V+P +
Sbjct: 960 RITNRVHYYLERELCSLSNMLINENQAAEELVNRTNLAIDWNAASK--RAGFELSVDPLI 1017
Query: 374 LMMLQTFRASNLLELRTRTRIFIQN--GRAMMGCLDETGTLESGQVFVQCSASRRREFLD 431
ML + N++ ++ +IF+ GR+M G +DETG L+ GQVF+Q S S R+
Sbjct: 1018 RDMLFSIYRYNIIHHISKAKIFLPPSLGRSMYGVVDETGLLQYGQVFIQYSPSIRQ---- 1073
Query: 432 NSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTN 491
+NR + GKV++ KNPC PGD+RV AV P+L H+VD VVFP G RPH +
Sbjct: 1074 --TSNRPI---LKTGKVLITKNPCHVPGDVRVFDAVWQPALAHLVDVVVFPQHGPRPHPD 1128
Query: 492 ECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDS 551
E +GSDLDGD Y + WD E++ M + + ++ T +D+ E+F Y+ DS
Sbjct: 1129 EMAGSDLDGDEYSIIWDQEMLLDYNEEAMVFPSSSAAEEDKEPTTDDMVEFFLRYLQQDS 1188
Query: 552 LGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAA-TIPSGLRVEIYPDFM 610
+G + +AH+ +ADL C +A +AVDF K+GV A + S + E+ PD+M
Sbjct: 1189 IGRMSHAHLAYADLH--GLFHENCHAIALKCAVAVDFPKSGVPAEPLSSFEQCEMTPDYM 1246
Query: 611 EKQDKTCYESQRVIGKLYRAVKDIAPPTATIKS----FTKEVAMQSYDTDMEV-DGFEDY 665
K Y S R+ G+L+R + + ++ F +E D++V G E
Sbjct: 1247 MSGGKPMYYSTRLNGQLHRKARKVEEVLEEFETRGSVFEREYDKLICPEDVDVFFGNEIK 1306
Query: 666 ITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAI--------- 716
+ + EY +R+ L+D YGI+ EA ++SG + + +RD +
Sbjct: 1307 LVQTLTLRDEYVDRMQQLLDEYGIEDEASVVSGHAASIKRLAGMERDDYSFYHTDKVVEL 1366
Query: 717 -------IFAVKSLKKEARAWFNKKNESDSSH----EDVYAKASAWYHVAY-HPSYWGRY 764
+F K ++ N +N+ ++ + ++ K WY VAY P
Sbjct: 1367 RYEKLYAVFRAKFFEEFGGEEINIENDGKNTRLKCTKAMHEKIRQWYFVAYVQP------ 1420
Query: 765 KEEGMNRTHFLSFPWCIHDKLIEIKR 790
K R S PW D L +++R
Sbjct: 1421 KINKAGRCIGQSLPWVAWDALCDLRR 1446
>gi|268563038|ref|XP_002638736.1| C. briggsae CBR-EGO-1 protein [Caenorhabditis briggsae]
Length = 1631
Score = 325 bits (833), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 257/858 (29%), Positives = 404/858 (47%), Gaps = 146/858 (17%)
Query: 46 LDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVL 105
+ +G V K++ TP++V + PE + NRV+R Y + LR++F D+D K+ +
Sbjct: 484 MREGYQRVRKIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRTNKT 543
Query: 106 SPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFAS------ 159
S L+ T V + L NGI + + F L SNSQ++DN +
Sbjct: 544 STLLEKT-----------VNTYLMNGITVAGRNFGYLGSSNSQMRDNGAYFMEKYSSSQC 592
Query: 160 ---------------RPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSR-EALHVDS 203
P++ AA R+++G F I N+ K ARLGQ F SR +++D
Sbjct: 593 REYEKMCRMAPPITFNPKIQAA--RKNLGRFETIDNIPKMMARLGQCFTQSRLSGVNLDR 650
Query: 204 SDIEIIPDVEVEDD--GITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKG 261
+ D+ + G Y FSDG+G +S A++V++ F PS FQ R+ G KG
Sbjct: 651 CTYVTMYDLTGGKNIKGDEYTFSDGVGMMSMNFAQMVSQVMDFGKGVPSCFQFRFRGMKG 710
Query: 262 VVAVDP-----------------TSSTKLSL----RKSMLKYKSESTSLDILANSKYQ-- 298
V+AV+P + T L R S +K+ S+ D + KY
Sbjct: 711 VIAVEPFLDDLRQWSIENDIQEVSEDTAWGLNCVFRPSQIKFISKRHPRDQVEIVKYSSP 770
Query: 299 -PCFLNRQLITLLSTLGIRDHVFEKK----QREGVAQLDAILTDPLKAHEALELMSSGEN 353
P LN+ I +L D V E + R +++ +L + + A +++
Sbjct: 771 VPVSLNKPFINIL------DQVSEMQSLECHRRVTNRIEELLDRQMLSF-AQQMIDETFC 823
Query: 354 TNVLKEL----------LMCGYKPDVEPFLLMMLQ-TFRASNLLELRT-RTRIFIQNGRA 401
N LKEL G+ EPF +++ + + S +LR + I GR+
Sbjct: 824 RNRLKELPRRIDIDYLRTTWGFTLSSEPFFRSLIKASIKFSITKQLRKEQIPIPADLGRS 883
Query: 402 MMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDM 461
M+G +DETG L+ GQ+FVQ + + L +S V+ G V++ KNPC+ GD+
Sbjct: 884 MLGVVDETGRLQYGQIFVQYTRN-----LALKLPPKSASRSVLTGTVLLTKNPCIVAGDV 938
Query: 462 RVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMD 521
R+ AVD+P LHHM D VVFP G RPH +E +GSDLDGD Y + WD +L+ P D
Sbjct: 939 RIFEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLDRNEDPFD 998
Query: 522 YTPAPEKVLARDMTIEDV-EEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAK 580
+T +K ++ I+D+ E++ Y+ DS+G I N+H+ ++D AR C++LAK
Sbjct: 999 FTSEKQKSSFKEEEIDDLMREFYVKYLKLDSVGTISNSHLHNSDQYGLNARV--CMDLAK 1056
Query: 581 LSTIAVDFSKTG--------------VAATIPSGLRVEIYPDFMEKQDKT-CYESQRVIG 625
+ AVDF+K+G V + R E PD+ D T Y S R+ G
Sbjct: 1057 KNCQAVDFTKSGQPPEELERKWRKDEVTGEMIPPERAERVPDYHMGNDHTPMYVSPRLCG 1116
Query: 626 KLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMD 685
KL+R K I + ++V + + D + VDG+++Y+ A + Y+ +L ++M+
Sbjct: 1117 KLFREFKAIDDVLKISEERDEQVEI-TIDETIMVDGYKEYMHSAREDLARYNAQLRSMME 1175
Query: 686 YYGIKTEAEILSGCIMEMAKSF-DKKRD-------LEAIIFAVKSLKKEARAWF------ 731
YGIKTE E+ SGCI++M DK +D + I V +L K+ R F
Sbjct: 1176 NYGIKTEGEVFSGCIVDMRNRISDKDQDDMSFYNTNQMIETKVTNLYKKYREHFFEEFEG 1235
Query: 732 --------NKKNESDSS---------HEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHF 774
+ ESD++ +++ KA AWY Y + R ++
Sbjct: 1236 AWEANTEGTSRGESDTNILQRHCRAPTQNMMKKAVAWYRACYEEARVTRENKK------- 1288
Query: 775 LSFPWCIHDKLIEIKRGK 792
LSF W ++D L +K+ K
Sbjct: 1289 LSFAWLMYDVLAMVKQTK 1306
>gi|407917163|gb|EKG10484.1| RNA-dependent RNA polymerase eukaryotic-type [Macrophomina phaseolina
MS6]
Length = 1221
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 217/631 (34%), Positives = 331/631 (52%), Gaps = 69/631 (10%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
+++V++TP+ Y GPE +SNRV+R YP+ DNFLR+ FVDE+ D + + L
Sbjct: 429 IHRVIITPAGTYLEGPEPEVSNRVLRKYPEHTDNFLRVQFVDEEGDAIRYEPKTSL---- 484
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM---FASRPELTAA-DI 168
+ R S L I IG F L FS+S ++ + W F + L AA ++
Sbjct: 485 ----GEIFHNRFKSVLDGEINIGGHSFAFLGFSHSSLRSQTCWFMAPFVQKLSLIAAQEV 540
Query: 169 RESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIG 228
+ +GDF I++ AK AAR+GQ+F + + V+ I++I DV D G + FSDG+G
Sbjct: 541 IKGLGDFSKIRSPAKCAARIGQAFSDTSGTVTVNEEIIKMIDDVR-NDRG--HIFSDGVG 597
Query: 229 KISAELAEIVAKNCGFTI-YTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYKSES 286
KIS +L + V K P+ QIR+GG KGVV++D +L LR SM+K+
Sbjct: 598 KISYKLLKRVWKEYQQARGQRPTCLQIRFGGAKGVVSLDDRLPGEQLVLRPSMVKFYGAG 657
Query: 287 T-SLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEA 344
T +++I AN + P +LNRQ I +L LG+ VF Q V QL I P+ A
Sbjct: 658 TWNIEICGANFRPLPMYLNRQFIKILEDLGVPAQVFLDLQSAMVEQLRRITKSPVNAATF 717
Query: 345 LELMSSGENT---NVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRA 401
LE G+ T ++L+ L G+ + + FL +++ S L +++ R+RI + G
Sbjct: 718 LEHARVGQATRMPHLLRMLDELGFSFNEDEFLSHVVEIAALSQLRDIKHRSRIQVDRGVT 777
Query: 402 MMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDM 461
+ G +DETG L +++ C R DN R+ G G+V+V ++P +HPGD+
Sbjct: 778 LYGIMDETGFLGEDEIY--CVIER---IGDNGRPKRTVLSG---GEVIVTRSPAMHPGDV 829
Query: 462 RVLRAVDVPS---LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFP 518
+ RAVDVP L + + VVF +KG+R ++ SG DLDGD+Y V +D L+P + +
Sbjct: 830 QKARAVDVPPDSPLQALSNVVVFSSKGQRDLPSQLSGGDLDGDLYNVIFDRRLMPRVTYQ 889
Query: 519 PMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLEL 578
P DY P + R +T +D+ ++F ++ D LG I N H+ AD P+ CL+L
Sbjct: 890 PADYKKVPPLDIGRPVTRQDITDFFVKFMETDQLGRISNIHMQLADRRPNGTLDPDCLKL 949
Query: 579 AKLSTIAVDFSKTGVAATIPSGLRVE-IYPDFMEKQDKTC-------------------- 617
A++++IAVDFSKTG+ + RV+ I PDFM +
Sbjct: 950 AEMASIAVDFSKTGIPVDMSQCPRVDMIRPDFMANGPRVIVEKKGAVFQDEDEDDLLDDD 1009
Query: 618 ---------------YESQRVIGKLYRAVKD 633
YES+RV+G+LYRA+ +
Sbjct: 1010 DAVGALDPDFKTFRYYESERVLGQLYRAIDE 1040
>gi|324500541|gb|ADY40252.1| RNA-dependent RNA polymerase EGO-1 [Ascaris suum]
gi|333440978|gb|AEF32764.1| RdRP1 [Ascaris suum]
Length = 1644
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 256/831 (30%), Positives = 399/831 (48%), Gaps = 120/831 (14%)
Query: 48 DGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSP 107
DG V KV++TP+++ F PE+ + NRV+R++ + + LR+ F D+D +L + P
Sbjct: 540 DGYQRVRKVVITPTRMLFVVPELLMGNRVLRNFDKDGNGSLRVQFRDDDSSQLRRNTVGP 599
Query: 108 -LISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAA 166
LI ST V +TL GI IG + F L SNSQ++DN + F A
Sbjct: 600 FLIQST-----------VFNTLTRGIHIGSRHFVYLGSSNSQLRDNGCYFFDDGKGGHAQ 648
Query: 167 DIRESMGDFRDIKNVAKYAARLGQSFGSSRE-ALHVDSSDIEIIPDVEVEDD--GITYCF 223
IR +G F D N+ K +R+GQ F +++ A+ + DV D G Y F
Sbjct: 649 WIRTQLGKF-DRGNIPKMMSRMGQCFTQAKQCAVVLKRHKYNKTWDVIGGRDSRGEPYIF 707
Query: 224 SDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP---------------- 267
SDG+G++S E AE +AK+ PS FQIR+ G KGV++VDP
Sbjct: 708 SDGVGRLSQEFAEKIAKDINLANAVPSCFQIRHRGMKGVLSVDPLLDDRKQWAIAHGIKD 767
Query: 268 -------TSSTKLSLRKSMLKYKS-ESTSLDILANSKYQPCFLNRQLITLLSTLG-IRDH 318
+ + R S K+K+ +++I+ S LNR +I++L + ++ H
Sbjct: 768 GSMATSRINDLAVVFRPSQDKFKAPRDEAIEIVKYSSPTCVSLNRPMISILDQVSSMQGH 827
Query: 319 VFEKKQREGV--------AQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVE 370
E + +L I D + + L + N + L L+ G+ E
Sbjct: 828 TVHMTVTERIHELLDMQLMELAEIFLDEDRCRDKLNELPRLMNVDRLS--LVRGFALTQE 885
Query: 371 PFLLMMLQTFRASNLLELRTRTRIFIQN--GRAMMGCLDETGTLESGQVFVQCSASRRRE 428
PF +L+ L + + +I I + GR+M G +DETG L+SGQ+FVQ + +
Sbjct: 886 PFFRSLLRASVRYTLKKQLAKEQILIPSHLGRSMFGVMDETGQLQSGQIFVQYTNN---V 942
Query: 429 FLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRP 488
+L N + +++G V++ KNPC+ GD+R+L AVD+P LHH+VD VVFP G RP
Sbjct: 943 WLKNPPPRAAKT--ILKGPVLMTKNPCIVAGDVRLLEAVDIPELHHLVDVVVFPQYGPRP 1000
Query: 489 HTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKV--LARDMTIEDVEEYFADY 546
H +E +GSDLDGD Y V WD +L+ P+D+T K + D ++ ++F +Y
Sbjct: 1001 HPDEMAGSDLDGDEYSVIWDKKLMFIRNENPLDFTKRMRKYEEVGTDKVDLEMRKFFVNY 1060
Query: 547 IVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVA------------ 594
I DS+G I NA +V+ADL S C +AK + AVDF KTG A
Sbjct: 1061 IKQDSIGSIANAFLVNADLY--GITSEICENIAKKHSQAVDFPKTGDAPEPLTRVWTIGK 1118
Query: 595 --ATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQS 652
+ +P R E +PDFM K + Y S R++G+LYR ++ + T+ S EV
Sbjct: 1119 DGSFVPPE-RSERWPDFMCKNHEPSYISPRLVGQLYRRIR-LVDDVLTLTSALDEVTELE 1176
Query: 653 YDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRD 712
D ++ G+E Y +A Y+ + ++D YGI+ E ++LSGCI + ++ RD
Sbjct: 1177 LDPMLQYPGWEKYAENARLQLDSYNAHIRAILDNYGIQDEGQLLSGCI-SVIRNRISDRD 1235
Query: 713 LEAIIF---------AVKSLKKEARAWF-------------NKKNESDSSHED------- 743
++ + F V S+ + R F +++ + + +D
Sbjct: 1236 VDDMSFFNTNHVIEKKVASIFRMFRHAFFREFGGYERCTEVDREGATSDNGDDERRVCLN 1295
Query: 744 ----VYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIKR 790
+ KASA+Y V Y+E + LSF W D L +K+
Sbjct: 1296 PTYSMRCKASAYYVVC--------YQEAAESTRRLLSFGWLAWDVLSHVKQ 1338
>gi|328872313|gb|EGG20680.1| RNA-directed RNA polymerase [Dictyostelium fasciculatum]
Length = 2876
Score = 318 bits (815), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 250/774 (32%), Positives = 370/774 (47%), Gaps = 108/774 (13%)
Query: 51 IYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLIS 110
+Y+ KV VTP+++ F PEI NR +R + D F+++ FV+E+LD S L S
Sbjct: 1268 VYIKKVFVTPTRIIFQKPEIMQCNRSIRLF--GADRFMQVQFVEENLDHRIELQQS-LAS 1324
Query: 111 STNEERHTTIYERVLSTLRNGI-VIGDKKFETLAFSNSQVKDNSMWMFAS-RPELTAAD- 167
TN S ++ GI V G F L S+SQ + N W + + E AD
Sbjct: 1325 YTN------------SMMKKGIHVPGFGTFHYLGNSSSQARKNMSWFYCQDKMENAKADG 1372
Query: 168 ----------IRESM-GDFRDIKNVAKYAARLGQSFGSSREALHVDSSDI-EIIPDVEVE 215
+R+++ G+F + +N KY + F S+ ++ + D E IPDV V
Sbjct: 1373 GEEQVYSLDHVRDTLLGEFTNFENPRKYLRAINLVFASTMPSIVIAEEDYHEDIPDVIVN 1432
Query: 216 DDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSL 275
Y F++GIG I + A+ V + C + I + AFQIR GG KGVV V P + L
Sbjct: 1433 G----YNFTEGIGYIGWKTAQKVNEACEY-IQSTCAFQIRIGGNKGVVVVRPDIQNGVYL 1487
Query: 276 RKSMLKYKSEST----SLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQL 331
RKSM K+ + S +L+I++ Y+PC LNRQ+I LLS LG+ D F + + +L
Sbjct: 1488 RKSMKKFSTTSNEWSRTLEIVSIPAYKPCTLNRQVINLLSGLGVPDRCFLTLLSQSLNEL 1547
Query: 332 DAILTDPLKAHEAL--ELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELR 389
++L P A AL +L + +L + P + L L+E R
Sbjct: 1548 ASLLHLPKVAKRALSSDLFDDVSDGEILSD-----------PMIRGTLHRIYCKRLVEYR 1596
Query: 390 TRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVV 449
+ I I R ++G D+T +L+ GQVF+Q S + +GEL +V G V
Sbjct: 1597 DKCFIPIDTARTLLGVTDDTASLKEGQVFLQVS-------------DENGELQIVTGPVA 1643
Query: 450 VAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDH 509
VAKNPCLH GD+R+++AVD+P+LHH+VD V F G P ECSGSDLDGD YFV +D
Sbjct: 1644 VAKNPCLHAGDVRIVQAVDIPALHHLVDVVCFSQNGSVPTFQECSGSDLDGDRYFVLFDR 1703
Query: 510 ELIPPLQFPPMDYTPAPEKVLA-RDMTIEDVEEYFADYIVN---DSLGVICNAHVVHADL 565
E+I ++ D + V A D TI A YI N +LG+I AH+ D+
Sbjct: 1704 EMIGEIK--QHDAFLGEDAVAADSDPTITQ-SSLIAQYITNIQKGTLGMIALAHLAVCDV 1760
Query: 566 EPDKARSNQCLELAKLSTIAVDFSKTGVAATIPS------GLRVEIYPDFMEKQ--DKTC 617
K L + VD KTGV IP+ G + + +P+FMEK K+
Sbjct: 1761 HSPKHPLAIALAIEHFK--EVDRVKTGVGGEIPTDVFQILGEQFDKFPNFMEKSLPQKSY 1818
Query: 618 YESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYD 677
+ES +++G+LY + + F EV + D + G+E Y DA + Y
Sbjct: 1819 WESDKILGRLYAQCVSL----QNVIRFMPEVKV---DPHLLTPGWETYQADAIETYRRYR 1871
Query: 678 NRLGNLMDYYGIKTEAEILSGCIMEM--AKSFDKKRDLEAI--------IFAVKSLKKEA 727
+++G+L+ Y I+ E ++L + E + DK +E F + L+
Sbjct: 1872 HQVGSLLKRYDIENEEDVLIQYVDETMSGHTLDKVVVMEIFNHYTVIQNTFREQFLRPFQ 1931
Query: 728 RAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCI 781
RA + ++ K SAWYH AY + T FLSF W +
Sbjct: 1932 RAGETIDQTITTHQHEIEKKVSAWYHTAY---------SDNKKLTKFLSFYWIV 1976
>gi|397600982|gb|EJK57779.1| hypothetical protein THAOC_22138 [Thalassiosira oceanica]
Length = 1292
Score = 317 bits (813), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 203/592 (34%), Positives = 319/592 (53%), Gaps = 70/592 (11%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDE----IDNFLRLSFVDEDLDKLYSTVLSPL 108
V ++L+TP+++ +G +SNR++R + + ++F+RL+ DE+ DKLYS ++
Sbjct: 449 VPRLLLTPTRLVVTGFHFEISNRMIRKFIQDHNFMSESFVRLTLGDENSDKLYSDDIT-- 506
Query: 109 ISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADI 168
+ ER+ + GI I K ++ LA+S+SQ+K+ S+W+ + T +
Sbjct: 507 ---------VQVEERIKEFVLGGIDIVGKHYKFLAYSSSQLKEQSLWLVSPERGWTVDGM 557
Query: 169 RESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSS------------------DIEIIP 210
RESMGDF K +KYAAR+GQ F ++ S D+E
Sbjct: 558 RESMGDFSMCKTPSKYAARIGQCFSTTVSVAEGSGSRNIFSAMDKTTDWLRVKDDLE--- 614
Query: 211 DVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTP---SAFQIRYGGYKGVV---A 264
D+ +G+ SDG+G I E+ + K F SA QIR GG KGV+ +
Sbjct: 615 DITSRWNGLEMQHSDGVGLIRKEVLQNAIKQVPFGPRDKTHISAIQIRLGGAKGVLVGWS 674
Query: 265 VDPTSSTK-------LSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRD 317
D + K + LR S +K+ + SL+++ + P FLNR ++ L S LGI+D
Sbjct: 675 FDQLNHLKNEIRNFDICLRPSQVKFSAPYMSLEVVNLATRIPYFLNRNVVLLGSHLGIQD 734
Query: 318 HVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNV--LKELLMCGYKPDVEPFLLM 375
+F Q+E + L+ +L D A L +S + + V L +L+ G KP+++PFL
Sbjct: 735 GIFLCLQKEMIQDLNLLLYDADHALRFLPSLSGPDCSLVSTLMSMLLAGMKPNIDPFLFS 794
Query: 376 MLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCN 435
L T RA +++ LR + RIF+++G +MGCLDETG + VF+Q DN
Sbjct: 795 CLHTTRAHHMMTLRKKARIFVKDGAVLMGCLDETGLVPENSVFIQVKH-------DN--- 844
Query: 436 NRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSG 495
G +EGKV+V K+P +HPGDMR+L AV++P L +M D ++F G RP ++ SG
Sbjct: 845 ---GSFKPIEGKVMVTKHPVMHPGDMRMLEAVNIPELKNMKDIIIFSRHGSRPEADKMSG 901
Query: 496 SDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDM-TIED--VEEYFADYIVNDSL 552
SDLDGD++ V WD L PM+Y+P P L ++ I D + +F + ND+L
Sbjct: 902 SDLDGDLFAVTWDKRLFLRQSLDPMEYSPPP--TLGQETPPINDSSLLAHFVGHAKNDNL 959
Query: 553 GVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVE 604
G I + HA + A ++C+ LAKL++IAVDF K+G++AT+P L+++
Sbjct: 960 GRISMLWLDHA-VTKGGAGCHECVRLAKLASIAVDFPKSGISATLPDDLKIK 1010
>gi|403346586|gb|EJY72692.1| Rna-dependent RNA polymerase [Oxytricha trifallax]
Length = 1470
Score = 317 bits (811), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 208/636 (32%), Positives = 334/636 (52%), Gaps = 77/636 (12%)
Query: 55 KVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLY--STVLSPLISST 112
++ +TP+ Y+ +NRV+R Y D + F+R+SFV+E L+K Y S ++ L+
Sbjct: 561 RLFITPTLDYYQPAYEDETNRVIRQYRDHLSRFVRVSFVNEYLEKGYYFSDQMNWLLGYL 620
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASR--PE------LT 164
+ L NGI +G+ + L++SNSQ+K++S WM P L
Sbjct: 621 HH------------VLVNGIQLGNYVLKFLSYSNSQIKNHSCWMLVESLVPNKDFDFPLN 668
Query: 165 AADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI-IPDVEVEDDGITYCF 223
I SMGDF KN+ K AR GQ F +++ L +D S++ +PDV+ + F
Sbjct: 669 ENIIMRSMGDFSQEKNMLKRYARRGQCFSTTKFILQLDKSEVTYNLPDVKRN----GFIF 724
Query: 224 SDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKY 282
+DG G IS ELA+++A+ F+ SAFQIR+GG KGV+ ++P ++ LR S +K+
Sbjct: 725 TDGCGYISPELAQLIAEQ--FSFKRSSAFQIRFGGTKGVLMLNPRLEGRQIQLRDSQIKF 782
Query: 283 KSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREG--VAQLDAILTDPLK 340
+S L+++ Y FLNRQ+I L++ LG+ + VF + QR+ AQ+ I + +K
Sbjct: 783 QSNDLGLNVVRCGTYSQGFLNRQIIILMNCLGVPESVFLELQRKAKEYAQVQEIYNNLIK 842
Query: 341 ----AHEALELMSSGENT-------------------NVLKELLMCGYKPDVEPFLLMML 377
A +A +L + + LK L+CGY +P +L
Sbjct: 843 KTSKAIKAFKLSQNKSKSLQQITKLINLSLGPSKWFEQSLKTALLCGYNIPNDPIFSSIL 902
Query: 378 QTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQC-----SASRRREFLDN 432
T + S+ + L+ + RI I + ++G +DE G LE +VF+Q S ++ D
Sbjct: 903 YTMQLSSFMNLKKKARIIIPDSCVLLGIVDEFGILEEDEVFIQVKQDNYSLKKKPWLWDI 962
Query: 433 SCNNR------SGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGK 486
+ NN+ S L + + V+V +NPC HPGD+R+L+AV+ P L H+ + VVF +KG+
Sbjct: 963 NLNNQEELEKDSKPLQICQD-VIVTRNPCTHPGDIRLLKAVNKPELSHLFNVVVFSSKGE 1021
Query: 487 RPHTNECSGSDLDGDVYFVCWDHELIPPLQ----FPPMDYTPAPEKVLARDMTIEDVEEY 542
RP N+ +G DLDGDVYFVCWD ++ ++ P Y P + + + E + +Y
Sbjct: 1022 RPQCNKMAGGDLDGDVYFVCWDSLILSHIKKENIQEPATYV-KPTLISEQPIDSEHIADY 1080
Query: 543 FADYIVNDSLGVICNAHVVHAD-LEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGL 601
F Y+ D LG + N H+ D + D +C EL+ L +IAVDF+K G + +
Sbjct: 1081 FIFYLQRDVLGKLANMHLALCDQIGVDGPLKEECQELSALQSIAVDFAKHGESVDKKNFE 1140
Query: 602 RVEI----YPDFMEKQDKTCYESQRVIGKLYRAVKD 633
++ +PDF EK ++ S+ V+G LYR + +
Sbjct: 1141 HLQKMLDNWPDFFEKSNQKMRVSEGVLGMLYRDINN 1176
>gi|303322200|ref|XP_003071093.1| RNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240110792|gb|EER28948.1| RNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 1195
Score = 316 bits (810), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 240/799 (30%), Positives = 379/799 (47%), Gaps = 107/799 (13%)
Query: 51 IYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLIS 110
+ V++ VTPS Y GP I NRV+R Y D I+NFLR+ FVDE D +Y + L
Sbjct: 414 VKVHRAQVTPSGTYLYGPNIETKNRVLRQYNDHINNFLRVEFVDETGDPVYFDPQASL-- 471
Query: 111 STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA-----SRPELTA 165
H +ER L+ GI IG F L FS+S ++ + W A S A
Sbjct: 472 ------HNIFHERFKGVLKQGIKIGGCHFSFLGFSHSSLRSQTCWFVAPFTTSSGERFDA 525
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSD 225
I + +G F I + AK AAR+GQ+F ++ ++ + D + + +V+ +G FSD
Sbjct: 526 QSIIQGLGSFSHIYSPAKLAARIGQTFSETQTSIAI-PEDAVFLNEPDVKRNG--RVFSD 582
Query: 226 GIGKISAELA-EIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYK 283
G+G S L +I ++ P+ FQIR+ G KG+V++D +L LR+SM+K+
Sbjct: 583 GVGTFSPRLLYKIWSEYALREKVKPTVFQIRFAGAKGMVSLDTRLKGEQLRLRESMVKFS 642
Query: 284 SEST-SLDILANS-KYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKA 341
+ ++++ + + P +LN Q+I +L LG+ F K Q + + +L ++ K
Sbjct: 643 ARRAFNIEVCGSGIRALPFYLNAQIIKILEDLGVPPTGFIKLQSDEIERLLSVGKSASKT 702
Query: 342 HEALELMSSGENTNV--LKELLM-CGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQN 398
+ LE S + V L E+L G+ D +PFL ++Q + +L+ R RI +
Sbjct: 703 SQFLEESSIAKEVRVPWLIEILHGLGFHHDQDPFLRSVVQLAIFFKMRDLKYRARIRVPE 762
Query: 399 GRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHP 458
+ G +DETG L G++F C+ FL N G +V +V+V + P LHP
Sbjct: 763 AVTLYGIMDETGYLNEGEIF--CT------FL----NEEGGREILVRDQVIVTRAPALHP 810
Query: 459 GDMRVLRAVDVPS---LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPL 515
GD++ +AVDVP L + +CV+F G R + SG DLDGD+Y V +D L+PP
Sbjct: 811 GDVQYAKAVDVPENSPLRSLHNCVIFSQHGFRDLPSMLSGGDLDGDLYNVIYDERLMPPC 870
Query: 516 QFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQC 575
+PP +Y EK+L R++ +D+ ++F ++ D LG I H AD P C
Sbjct: 871 TYPPANYPKVEEKLLDREVVRDDIIDFFVTFMQQDQLGRIATIHQAIADQRPAGTLDRDC 930
Query: 576 LELAKLSTIAVDFSKTGVA---ATIPSGLRVEIYPDFM---------------------- 610
L LA+L ++AVDFSK+G+ IP R YPDFM
Sbjct: 931 LLLAELHSVAVDFSKSGIPVDLTRIPK--RPRYYPDFMAPSPRIKIADSIEVVEEEQYLA 988
Query: 611 --------EKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDM----- 657
E+ + Y+S R++G +YR + + + + ++ D +
Sbjct: 989 EDEDDDEDERPQRRYYKSNRILGVMYRNINE----QEFLNAVRNASKLRRDDNTLLNAIW 1044
Query: 658 -----EVDGFE--DYITDAFKYKTEYDNRLGNLMDYYGIK------TEAEILSGCIMEMA 704
E +GF+ + D K K Y+++L +M Y TE E++ G I+
Sbjct: 1045 DYVASETEGFQWDHLVEDGRKVKDIYEDKLREIMQQYSKTPWKSSLTEVEVVMGSILGQ- 1103
Query: 705 KSFDKKRDLEAIIFAVKSLKKEARAWFNKK----NESDSSHEDVYAKASAWYHVAYHPSY 760
S +RD E A +S+++E + N + DS +D ++ A + A H Y
Sbjct: 1104 NSKQSRRDKE----ASQSMREEYQELVNFTISMLTDRDSGGDDSLERSIACFWHALHGKY 1159
Query: 761 WGRYKEEGMNRTHFLSFPW 779
G + LSFPW
Sbjct: 1160 SG---SRSQKKVALLSFPW 1175
>gi|392861850|gb|EAS37560.2| hypothetical protein CIMG_02715 [Coccidioides immitis RS]
Length = 1195
Score = 315 bits (807), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 239/799 (29%), Positives = 381/799 (47%), Gaps = 107/799 (13%)
Query: 51 IYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLIS 110
+ V++ VTPS Y GP I NRV+R Y D I+NFLR+ FVDE D +Y + L
Sbjct: 414 VKVHRAQVTPSGTYLYGPNIETKNRVLRQYNDHINNFLRVEFVDETGDPVYFDPQASL-- 471
Query: 111 STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA-----SRPELTA 165
H +ER L+ GI IG F L FS+S ++ + W A S A
Sbjct: 472 ------HNIFHERFKGVLKQGIKIGGCHFSFLGFSHSSLRSQTCWFVAPFTTSSGERFDA 525
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSD 225
I + +G F I + AK AAR+GQ+F ++ ++ + D + + +++ +G FSD
Sbjct: 526 QSIIQGLGSFSHIYSPAKLAARIGQTFSETQTSIAI-PEDAVFLNEPDMKRNG--RVFSD 582
Query: 226 GIGKISAELA-EIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYK 283
G+G S L +I ++ P+ FQIR+ G KG+V++D +L LR+SM+K+
Sbjct: 583 GVGTFSPRLLYKIWSEYALREKVKPTVFQIRFAGAKGMVSLDTRLKGEQLRLRESMVKFS 642
Query: 284 SEST-SLDILANS-KYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKA 341
+ ++++ + + P +LN Q+I +L LG+ F K Q + + +L ++ K
Sbjct: 643 ARRAFNIEVCGSGIRALPFYLNAQIIKILEDLGVPPTGFIKLQSDEIERLLSVGKSASKT 702
Query: 342 HEALELMSSGENTNV--LKELLM-CGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQN 398
+ LE S + V L E+L G+ D +PFL ++Q + +L+ R RI +
Sbjct: 703 SQFLEESSIAKEVRVPWLIEILHGLGFHHDQDPFLRSVVQLAIFFKMRDLKYRARIRVPE 762
Query: 399 GRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHP 458
+ G +DETG L G++F C+ FL N G +V +V+V + P LHP
Sbjct: 763 AVTLYGIMDETGYLNEGEIF--CT------FL----NEEGGREILVRDQVIVTRAPALHP 810
Query: 459 GDMRVLRAVDVPS---LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPL 515
GD++ +AVDVP L + +CV+F G R + SG DLDGD+Y V +D L+PP
Sbjct: 811 GDVQYAKAVDVPENSPLRSLHNCVIFSQHGFRDLPSMLSGGDLDGDLYNVIYDERLMPPC 870
Query: 516 QFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQC 575
+PP +Y EK+L R++ +D+ ++F ++ D LG I H AD P C
Sbjct: 871 TYPPANYPKVEEKLLDREVVRDDIIDFFVTFMQQDQLGRIATIHQAIADQRPAGTLDQDC 930
Query: 576 LELAKLSTIAVDFSKTGVA---ATIPSGLRVEIYPDFM---------------------- 610
L LA+L ++AVDFSK+G+ IP R YPDFM
Sbjct: 931 LLLAELHSVAVDFSKSGIPVDLTRIPK--RPRYYPDFMAPSPRIKIADSIEVVEEEQYLA 988
Query: 611 --------EKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDM----- 657
E+ + Y+S R++G +YR + + + + ++ D +
Sbjct: 989 EDEDDDEDERPQRRYYKSNRILGVMYRNINE----QEFLNAVRNASKLRRDDNTLLNAIW 1044
Query: 658 -----EVDGFE--DYITDAFKYKTEYDNRLGNLMDYYGIK------TEAEILSGCIMEMA 704
E +GF+ + D K K Y+++L +M Y TE E++ G I+
Sbjct: 1045 DYVASETEGFQWDHLVEDGRKVKDIYEDKLREIMQQYSKTPWKSSLTEVEVVMGSILGQ- 1103
Query: 705 KSFDKKRDLEAIIFAVKSLKKEARAWFNKK----NESDSSHEDVYAKASAWYHVAYHPSY 760
S +RD E A +S+++E + N + DS +D ++ A + A H Y
Sbjct: 1104 NSKQSRRDKE----ASQSMREEYQELVNFTISMLTDRDSGGDDSLERSIASFWHALHAKY 1159
Query: 761 WGRYKEEGMNRTHFLSFPW 779
G ++ + LSFPW
Sbjct: 1160 SGSRSQK---KVALLSFPW 1175
>gi|324500457|gb|ADY40216.1| RNA-dependent RNA polymerase RRF-3 [Ascaris suum]
gi|333440982|gb|AEF32766.1| RdRP3 [Ascaris suum]
Length = 1640
Score = 315 bits (807), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 250/816 (30%), Positives = 398/816 (48%), Gaps = 113/816 (13%)
Query: 46 LDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVL 105
L + + KV+ TP ++ PE+ ++NRVVR + +E LR F D++ +L V+
Sbjct: 558 LPPNCVLIRKVMATPLRLILMPPEVMMTNRVVRHFGEEYA--LRCVFRDDNGQRL---VV 612
Query: 106 SPLISSTNEERHTTIYER-VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPEL- 163
+ + + I +R V TL GI I + ++ LA+SNSQ++D+ +M+++ +
Sbjct: 613 NDFTRGRAVQEQSLIIQRLVYKTLSEGIHIASRHYKFLAWSNSQMRDHGCYMYSATKVID 672
Query: 164 ---------TAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDI----EIIP 210
DIR MGDF KNV K +R+GQ F ++ + ++ D +I+
Sbjct: 673 DVSGKERIYEIEDIRRWMGDFTASKNVPKLMSRMGQCFTQAQPTIVLERKDWRMEEDIVG 732
Query: 211 DVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-- 268
+ + G + FSDG G+ISA+ A +VA PS FQ+R+ G+KGV+ VDP+
Sbjct: 733 GLPHPETGELFNFSDGAGRISAKYASLVAAKLDLRP-PPSCFQVRFKGFKGVLCVDPSLD 791
Query: 269 --SSTKLSLRKSMLKYK---SESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKK 323
+ + R+S K++ SE+ L+++ +S L+R LI +L D V E++
Sbjct: 792 LENKENVVFRRSQKKFEEDESEAAELEVVKHSMPSFVCLSRPLIMIL------DQVSERQ 845
Query: 324 QREG------------VAQLDAILTDPLKAHEALELMSSGENTNV-LKELLMCGYKPDVE 370
RE +L+ + L A E +SS + ++ ++L G+ E
Sbjct: 846 NRELHQRLCWRIHCLLEKELNTLAEMLLDEEVAAEALSSRLSLSIDFRQLHDSGFTFTNE 905
Query: 371 PFLLMMLQTFRASNLLELRTRTRIFIQN--GRAMMGCLDETGTLESGQVFVQCSASRRRE 428
PF +L N+ + ++ +IF+ GR M G +D+TG L+ GQVFVQ S S R
Sbjct: 906 PFFRSLLVAVHHYNIKQHLSKLKIFLPGSMGRTMYGVIDDTGVLQYGQVFVQYSPSVR-- 963
Query: 429 FLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRP 488
S ++ G V+V KNPCL GD+R+ AV SL H+ D +VFP G RP
Sbjct: 964 -------TPSKKVITHVGPVLVTKNPCLVGGDVRMFTAVYQSSLSHLRDVIVFPRYGPRP 1016
Query: 489 HTNECSGSDLDGDVYFVCWDHELI-----PPLQFP-PM--DYTPAPEKVLARDMTIEDVE 540
HT+E +GSDLDGD Y V +D +L + FP P+ DY P T ED+
Sbjct: 1017 HTDEMAGSDLDGDEYIVIFDKDLFLDHNEEAMHFPKPVASDYDTPP--------TAEDMI 1068
Query: 541 EYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTG-VAATIPS 599
++F Y+ DS+G + NAH++ +D C +A+ +IAVDF K+G A + S
Sbjct: 1069 DFFLKYLSQDSIGRMSNAHLIMSDRL--GLFHEICDGIARKCSIAVDFPKSGEPAEPLSS 1126
Query: 600 GLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAP--PTATIKSFTKEVAMQSYDTDM 657
+ +I PDFM+K + Y S R++G+LYR VK + A + FT Q YD +
Sbjct: 1127 FEQSDIVPDFMQKSFRPSYRSHRLVGRLYRKVKKVENIVELAQMIPFTDTFDPQLYDESL 1186
Query: 658 EVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAII 717
D + ++ + +Y+ ++ LMD YGI EA ++SG + + + D ++D +
Sbjct: 1187 -FDTHPCLVRNSIHLRNQYNAKVQQLMDEYGITDEASVVSGHSVTIRRITDMEKDDYSYY 1245
Query: 718 FA-----------VKSLKKEARAWFNKKNESDSSHEDVYA------------KASAWYHV 754
+ +S ++E F + ESD D + KA WY V
Sbjct: 1246 HSDRIVEMRYSRIYESFRREFFMEFGE--ESDFITVDAFGQRGIRWNSALITKAKVWYAV 1303
Query: 755 AYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIKR 790
Y + M + F SFPW + D L+ +KR
Sbjct: 1304 C--------YGKRAMCPSKFRSFPWIVWDLLLIVKR 1331
>gi|308510538|ref|XP_003117452.1| CRE-RRF-3 protein [Caenorhabditis remanei]
gi|308242366|gb|EFO86318.1| CRE-RRF-3 protein [Caenorhabditis remanei]
Length = 1779
Score = 315 bits (806), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 235/821 (28%), Positives = 390/821 (47%), Gaps = 101/821 (12%)
Query: 43 AVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYS 102
A L + V KV+V+PS+V PE+ + NR+VR + D LR F D++L +L
Sbjct: 668 AKPLPKNCVSVAKVIVSPSRVLLMAPEVMMVNRIVRRFGP--DYALRCVFRDDNLGRL-- 723
Query: 103 TVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPE 162
+ + + + E + +TL++GI I D+ + L +SNSQ++D +++A R +
Sbjct: 724 -AIRDFSVNNIDHMSNVVTEAIYNTLKSGIKIADRVYSFLGWSNSQMRDQGCYLYAPRVD 782
Query: 163 L-------TAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIE-------- 207
T DIR MGDFRD +V K +R+GQ F ++ + V +
Sbjct: 783 PITGAVTGTVEDIRIWMGDFRDAVSVPKMMSRMGQCFTQAQPTVRVSPILFQLNFLFQVK 842
Query: 208 -------IIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYK 260
+ PD+E D +CFSDG G+IS +LA ++K P+ FQ+R+ G+K
Sbjct: 843 LQRHHWIVEPDMEGGPDN-KFCFSDGCGRISYKLAGHISKILDLKA-IPACFQVRFKGFK 900
Query: 261 GVVAVDPT-----SSTKLSLRKSMLKYKS-----ESTSLDILANSKYQPCFLNRQLITLL 310
G++ +DPT + K+ RKS K+ + L+++ + P LNR IT+L
Sbjct: 901 GILVIDPTIDDIMNMPKVIFRKSQQKFGEGGGDLQDEYLEVVKYAMPSPVCLNRPFITIL 960
Query: 311 STLGIRDHVFEKK----------QREGVAQLDAILTDPLKAHEALELMSSGENTNVLKEL 360
+ + + +RE + + +L + A E + + + N+ +
Sbjct: 961 DQVSAKQSTASHRRITKRVHYYLERELCSLSNMLLNENQAAEELVNRTNLPIDWNLASK- 1019
Query: 361 LMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQN--GRAMMGCLDETGTLESGQVF 418
G++ +P + ML N++ ++ +IF+ GR+M G +DETG L+ GQVF
Sbjct: 1020 -RAGFQLSTDPLVRSMLFAIYRYNIIHHISKAKIFLPPNLGRSMYGVVDETGLLQYGQVF 1078
Query: 419 VQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDC 478
+Q S + R+ S + GKV++ KNPC PGD+RV AV P+L H+VD
Sbjct: 1079 IQYSPTIRQT---------SDTPILKTGKVLITKNPCHVPGDVRVFEAVWQPALAHLVDV 1129
Query: 479 VVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIED 538
VVFP G RPH +E +GSDLDGD Y + WD +++ M + + + ++ T +D
Sbjct: 1130 VVFPRHGPRPHPDEMAGSDLDGDEYSIIWDQDMLLDYNETAMVFPSSSSQEEDKEPTTDD 1189
Query: 539 VEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAA-TI 597
+ E+F Y+ DS+G + NAH+V+ADL + C +A +AVDF K+GV A +
Sbjct: 1190 MVEFFLRYLQQDSIGRMSNAHLVYADL--NGLFHENCHSIALKCAVAVDFPKSGVPAEPL 1247
Query: 598 PSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKS--------FTKEVA 649
S + ++ PD+M K Y S R+ G+L+R + + +S + K +
Sbjct: 1248 TSHEQCDVTPDYMISGGKPMYYSARLNGQLHRKARKVEEVLEEYESRGSIFEGEYDKLIC 1307
Query: 650 MQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDK 709
++ D G E + + EY +R+ L+D YGI+ EA ++SG + +
Sbjct: 1308 PENVDVFF---GSESKLVQVMTLRDEYIDRMQQLLDEYGIEDEASVVSGHAASIKRLAGM 1364
Query: 710 KRDLEAI----------------IFAVKSLK----KEARAWFNKKNESDSSHEDVYAKAS 749
+RD + +F K + +EA + K+ + ++ K
Sbjct: 1365 ERDDYSFYHTDKVVELRYEKLYSVFRAKFFEEFGGEEANTVHDGKDTRVACTPAMHEKIR 1424
Query: 750 AWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIKR 790
WY VAY + K+ R S PW D L ++R
Sbjct: 1425 QWYFVAY-----VQPKKNKTGRYIGQSLPWVAWDVLCSLRR 1460
>gi|409039622|gb|EKM49158.1| hypothetical protein PHACADRAFT_201955 [Phanerochaete carnosa
HHB-10118-sp]
Length = 908
Score = 314 bits (805), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 233/787 (29%), Positives = 370/787 (47%), Gaps = 97/787 (12%)
Query: 50 LIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLI 109
L V + LVTP++ + P SN ++R + +D FLR+ FVD+D D + V L+
Sbjct: 163 LTAVRRCLVTPTRCVLNPPTWETSNEMLRDHEHYVDRFLRVQFVDDDGD--FPVVGETLV 220
Query: 110 SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIR 169
+ ++ RV L +G+VI + + FS SQ K+ WM A T + +
Sbjct: 221 IDDEMQGREGVFARVRRALSDGLVIAGRHYVFATFSESQAKERGCWMIAEDGPFTVSAVL 280
Query: 170 ESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGK 229
MGD + +AK+AAR GS + + ++ + + D++ +Y F+DG+G
Sbjct: 281 AKMGDLSQERIIAKHAAR---QRGSMPKKITINRA----LDDIKRN----SYVFTDGVGH 329
Query: 230 ISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAV---DPTSSTKLSLRKSMLKYKS-- 284
S LA+ AK G+ + SA QIR GG KGV+AV + ++ LR SM+K +
Sbjct: 330 FSHSLAQACAKTLGYRLIPVSAAQIRIGGAKGVLAVVQDETLGENEVRLRPSMIKLQGVK 389
Query: 285 ESTSLDILANSKYQPCFLNRQLITLLSTLGIR-DHVFE--KKQREGVAQLDAILTDPLKA 341
+L+I+ + Y LNRQ I L+ G+ D +F+ +++ + L++ DP++
Sbjct: 390 PEPTLNIIKVATYSKATLNRQAILLMEDRGVSSDTLFDIFTQEKRRIQGLESGF-DPMRL 448
Query: 342 HEALELMSSGENTNVLKELLMCGYKPDV-EPFLLMMLQTFRASNLLELRTRTRIFIQNGR 400
+V L + D+ +P + + + L +L+ + I +
Sbjct: 449 ------------ASVTTFPLARALRHDIKDPVVQNVTSLVKCRLLCDLKWKAWIELSESA 496
Query: 401 AMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGD 460
+MG DET +L+ G++F Q S + V+E + + +NPCLHPGD
Sbjct: 497 YLMGIADETDSLQEGEIFCQIHPS-------------GSDPQVIEARCTIYRNPCLHPGD 543
Query: 461 MRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPL--QFP 518
+R++ AVD P L H+ + +VF +G R N +G DLDGD Y + WD L+ P ++
Sbjct: 544 VRLVTAVDCPKLRHLRNVIVFSTRGCRDLPNMLAGGDLDGDCYSLIWDPRLLIPEGGEYE 603
Query: 519 PMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLEL 578
PMDYTP P +TIE +++F D + ND LG +CNAH+ ADL QC EL
Sbjct: 604 PMDYTPPPAVRSEYPVTIEQTKQHFLDTMKNDVLGRVCNAHMALADLH--GPSDFQCREL 661
Query: 579 AKLSTIAVDFSKTGVAATIPSGLRVEIYPDFM----------EKQDKTCYESQRVIGKLY 628
A L++ AVDFSKTGVA R+E YPDFM +KQ+ Y S++V+G+++
Sbjct: 662 ASLASQAVDFSKTGVAVQQSEIPRLEEYPDFMGKEYKSIRIFKKQEIRSYSSEKVLGRMF 721
Query: 629 RAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYG 688
R + P + + E GF +Y+ +A +K Y+ L L+ Y
Sbjct: 722 REID----PEPIFEEAVELAGDPRLLEAGEETGFREYLQEAAMHKARYEFELTGLLRRYN 777
Query: 689 IKTEAEILSGCIMEMAKS---FDKKRDLEAII-----FAVKSLKKEARAWFNKKNESDSS 740
I E E ++G ++ K+ +K DL + + + A + + S+ S
Sbjct: 778 I-NETECVAGLLLRSPKTRLKVEKDYDLRVAVRDAYSHIIAATIARADGYIKEHPVSEDS 836
Query: 741 HEDVYAKASAWYHVAYHPSY-------WGRYKEE----GMNRT-----------HFLSFP 778
+ A A A Y + Y Y WG+ E G + T LSFP
Sbjct: 837 TQYRLAWAIAAYKLTYDQEYSTYLKIDWGKVDEAIWGGGYDETLDEFEEVESSERRLSFP 896
Query: 779 WCIHDKL 785
W D L
Sbjct: 897 WVSADSL 903
>gi|320034943|gb|EFW16885.1| conserved hypothetical protein [Coccidioides posadasii str. Silveira]
Length = 1195
Score = 314 bits (805), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 239/799 (29%), Positives = 379/799 (47%), Gaps = 107/799 (13%)
Query: 51 IYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLIS 110
+ V++ VTPS Y GP I NRV+R Y D I+NFLR+ FVDE D +Y + L
Sbjct: 414 VKVHRAQVTPSGTYLYGPNIETKNRVLRQYNDHINNFLRVEFVDETGDPVYFDPQASL-- 471
Query: 111 STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA-----SRPELTA 165
H +ER L+ GI IG F L FS+S ++ + W A S A
Sbjct: 472 ------HNIFHERFKGVLKQGIKIGGCHFSFLGFSHSSLRSQTCWFVAPFTTSSGERFDA 525
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSD 225
I + +G F I + AK AAR+GQ+F ++ ++ + D + + +++ +G FSD
Sbjct: 526 QSIIQGLGSFSHIYSPAKLAARIGQTFSETQTSIAI-PEDAVFLNEPDMKRNG--RVFSD 582
Query: 226 GIGKISAELA-EIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYK 283
G+G S L +I ++ P+ FQIR+ G KG+V++D +L LR+SM+K+
Sbjct: 583 GVGTFSPRLLYKIWSEYALREKVKPTVFQIRFAGAKGMVSLDTRLKGEQLRLRESMVKFS 642
Query: 284 SEST-SLDILANS-KYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKA 341
+ ++++ + + P +LN Q+I +L LG+ F K Q + + +L ++ K
Sbjct: 643 ARRAFNIEVCGSGIRALPFYLNAQIIKILEDLGVPPTGFIKLQSDEIERLLSVGKSASKT 702
Query: 342 HEALELMSSGENTNV--LKELLM-CGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQN 398
+ LE S + V L E+L G+ D +PFL ++Q + +L+ R RI +
Sbjct: 703 SQFLEESSIAKEVRVPWLIEILHGLGFHHDQDPFLRSVVQLAIFFKMRDLKYRARIRVPE 762
Query: 399 GRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHP 458
+ G +DETG L G++F C+ FL N G +V +V+V + P LHP
Sbjct: 763 AVTLYGIMDETGYLNEGEIF--CT------FL----NEEGGREILVRDQVIVTRAPALHP 810
Query: 459 GDMRVLRAVDVPS---LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPL 515
GD++ +AVDVP L + +CV+F G R + SG DLDGD+Y V +D L+PP
Sbjct: 811 GDVQYAKAVDVPENSPLRSLHNCVIFSQHGFRDLPSMLSGGDLDGDLYNVIYDERLMPPC 870
Query: 516 QFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQC 575
+PP +Y EK+L R++ +D+ ++F ++ D LG I H AD P C
Sbjct: 871 TYPPANYPKVEEKLLDREVLRDDIIDFFVTFMQQDQLGRIATIHQAIADQRPAGTLDRDC 930
Query: 576 LELAKLSTIAVDFSKTGVA---ATIPSGLRVEIYPDFM---------------------- 610
L LA+L ++AVDFSK+G+ IP R YPDFM
Sbjct: 931 LLLAELHSVAVDFSKSGIPVDLTRIPK--RPRYYPDFMAPSPRIKIADSIEVVEEEQYLA 988
Query: 611 --------EKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDM----- 657
E+ + Y+S R++G +YR + + + + ++ D +
Sbjct: 989 EDEDDDEDERPQRRYYKSNRILGVMYRNINE----QEFLNAVRNASKLRRDDNTLLNAIW 1044
Query: 658 -----EVDGFE--DYITDAFKYKTEYDNRLGNLMDYYGIK------TEAEILSGCIMEMA 704
E +GF+ + D K K Y+++L +M Y TE E++ G I+
Sbjct: 1045 DYVASETEGFQWDHLVEDGRKVKDIYEDKLREIMQQYSKTPWKSSLTEVEVVMGSILGQ- 1103
Query: 705 KSFDKKRDLEAIIFAVKSLKKEARAWFNKK----NESDSSHEDVYAKASAWYHVAYHPSY 760
S +RD E A +S+++E + N + DS +D ++ A + A H Y
Sbjct: 1104 NSKQSRRDKE----ASQSMREEYQELVNFTISMLTDRDSGGDDSLERSIASFWHALHGKY 1159
Query: 761 WGRYKEEGMNRTHFLSFPW 779
G + LSFPW
Sbjct: 1160 SG---SRSQKKVALLSFPW 1175
>gi|348680026|gb|EGZ19842.1| hypothetical protein PHYSODRAFT_558487 [Phytophthora sojae]
Length = 2706
Score = 314 bits (805), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 264/799 (33%), Positives = 392/799 (49%), Gaps = 86/799 (10%)
Query: 25 LEEQYRKYVLSRR-----FLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRS 79
+ EQ+ Y+ R +SP+ L G + V KV+VTPS+V F P+ + SNRV R
Sbjct: 1088 IAEQFSAYLKEERSVLESMCSSPS--LGSGAV-VYKVIVTPSRVVFCPPDPAPSNRVFRH 1144
Query: 80 YPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKK- 138
+ E NF+ + F D+++++L T S N I R+ + L+ GI + +
Sbjct: 1145 WGSE--NFMYMYFRDDNMERLDYT-------SGN------ILRRIRNVLKKGIEVPHARD 1189
Query: 139 ---FETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSS 195
F L S SQV+ NS +F L ++R +GD + + AKY RLGQ+F S+
Sbjct: 1190 GCRFNFLGCSLSQVR-NSSAIFTL---LDHHEVRSWIGDLSHLTSPAKYLKRLGQAFSST 1245
Query: 196 REALHVDSSDIEIIPDVEVEDDGIT---YCFSDGIGKISAELAEIVAKNCGFTIYTPSAF 252
+E +V S + D VED IT Y F+DG G+I+ AE + + + YTPSAF
Sbjct: 1246 KETFNVSQS----VLDNPVED--ITNDDYVFTDGCGEIAKIGAESIVRELNLS-YTPSAF 1298
Query: 253 QIRYGGYKGVVAV------DPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLNRQL 306
QIR GG KGV+ V + T + LR+SM K+ S T L+I+A + +L RQ
Sbjct: 1299 QIRLGGAKGVLVVSDQDNPEVTREESILLRESMSKFASNHTMLEIVACAGKSEAYLTRQS 1358
Query: 307 ITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENT---NVLKELLMC 363
+ +LS LGI + V + Q + +++L ++ A+ L+ + + +VL L
Sbjct: 1359 VLILSDLGINEDVLMEMQEQFLSELRTLIASDDGAYFELKAVLPPKVIWWIDVLTRKL-- 1416
Query: 364 GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA 423
G K + FL + +T L R RI I GR +MG D TGTL+ G+VFVQ S
Sbjct: 1417 GVKILDDEFLSSLARTIYHYRLANTVMRARIPIAQGRTLMGVADFTGTLDYGEVFVQYSV 1476
Query: 424 SRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRA-VDVP-SLHHMVDCVVF 481
+ D + E V V ++PC HPGD+RVLR DVP L + DC+VF
Sbjct: 1477 TEEETGADRYVT-------LDEVDVAVHRSPCHHPGDIRVLRCRADVPRQLRQLKDCIVF 1529
Query: 482 PAKGKRPHTNECSGSDLDGDVYFVCWDHELIP-------PLQFPPMDYTPAPEKVLARDM 534
P +G RPH +EC+G DLDGD++ V WD LIP P+ F + +
Sbjct: 1530 PCQGPRPHPDECTGGDLDGDMFVVIWDKRLIPSRTQVHEPMAFDEENEGDTSPRGGEFYQ 1589
Query: 535 TIED--VEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTG 592
+ +D + +++ I +D LGV NAH+ D + + LA++ + VD ++
Sbjct: 1590 STDDDGLIDFYVHSIQDDILGVASNAHLALCDSSHEGSLDESAKALARICSKQVDSLRSE 1649
Query: 593 VAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQS 652
I L + YPDFM+ ++K Y S++V+GK++R K I T T K T+ M
Sbjct: 1650 KDLEIVRSLAPKNYPDFMQNKEKPSYPSKKVLGKMFRRCKAIFDTTMT-KGVTQ---MPV 1705
Query: 653 YDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSF--DKK 710
D G+ DY+ A +Y RL L+ G +TEAE+ +G I+E + D
Sbjct: 1706 RDDHFLTAGYTDYVDHAKMLYRQYKLRLRALLLMSGAQTEAELATGMIVEPPSVYKADYF 1765
Query: 711 RDLEAIIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMN 770
R E L+ RA FN + +S E++ ASA Y VAY ++
Sbjct: 1766 RFGEQCKDVFYELQTAFRAQFNGDTSTLASGEEL-KLASACYFVAY---------DDSDA 1815
Query: 771 RTHFLSFPWCIHDKLIEIK 789
T LSF W + D L IK
Sbjct: 1816 STRSLSFTWIVIDLLTTIK 1834
>gi|241997884|ref|XP_002433585.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
gi|215495344|gb|EEC04985.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
Length = 528
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 201/541 (37%), Positives = 283/541 (52%), Gaps = 32/541 (5%)
Query: 168 IRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVE------------ 215
IR+ +GD I++V K AR+GQ+F S + V + DV
Sbjct: 1 IRQGIGDLSSIRSVPKLMARMGQAFSQSLGFVTVPRQYTAVEADVRCRAPPGASAAALAE 60
Query: 216 DDGITYCFSDGIGKISAELAEIVAKNCGFT-IYTPSAFQIRYGGYKGVVAVDPT-SSTKL 273
Y FSDGIG+IS L V ++ P A QIRYGG KG++ VDPT + ++
Sbjct: 61 AAKRDYIFSDGIGRISPALMRKVYRSLELEDGEEPCAVQIRYGGCKGMLLVDPTMAGRRI 120
Query: 274 SLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDA 333
R SM K+ S+ L +L SK + +LNR +IT+L GIR F Q LD+
Sbjct: 121 VFRTSMCKFPSDHEDLYVLKTSKPRVLYLNRPMITILEQSGIRAKAFLALQNR---VLDS 177
Query: 334 ILTDPLKAHEALELMSSGENTNV-LKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRT 392
+ L AHEA +++ + KEL G VEPF +++ L E T+
Sbjct: 178 FINSMLDAHEAAQVLCGYCALRLPYKELAGVGVDLTVEPFFRGLIRAVNRKVLSEWLTKA 237
Query: 393 RIFI--QNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVV 450
RI + + GR M G LDET TLE GQVFVQ S R + +++G V+V
Sbjct: 238 RILVPPEKGRTMFGVLDETDTLEYGQVFVQYSNDMFRYKATDPAT-------ILKGDVIV 290
Query: 451 AKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHE 510
KNPC+HPGD+R L AVDVP LHH+ DC+VFPAKG+RPH +E SGSDLDGD Y V W +
Sbjct: 291 TKNPCMHPGDIRRLTAVDVPRLHHVRDCIVFPAKGERPHPDEMSGSDLDGDEYSVLWYED 350
Query: 511 LIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKA 570
LI PM Y P K + ++D+ ++F YI D +G+I NAH+V AD+
Sbjct: 351 LIFRNNCSPMHYYSDPPKERKAPIEVQDMIDFFCQYIKGDKIGLIANAHLVWADMLDGGI 410
Query: 571 RSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQD-KTCYESQRVIGKLYR 629
S +C +LA+ + +DF+K G + + +YPDFMEK D K Y S++V+G+LYR
Sbjct: 411 NSRRCRDLARKCAVNLDFAKRGDLKGFQNSEKPPMYPDFMEKLDTKNTYCSKKVLGQLYR 470
Query: 630 AVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGI 689
K + T ++ + D + +DG E++I A Y ++ L+ YGI
Sbjct: 471 NCKKVELSTECLEVVEDSLP----DPRLLLDGREEFIESARTSYRRYAMKIRALLKSYGI 526
Query: 690 K 690
+
Sbjct: 527 E 527
>gi|341891711|gb|EGT47646.1| CBN-EGO-1 protein [Caenorhabditis brenneri]
Length = 1632
Score = 313 bits (801), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 257/860 (29%), Positives = 398/860 (46%), Gaps = 150/860 (17%)
Query: 46 LDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVL 105
+ +G V K++ TP++V + PE + NRV+R Y + LR++F D+D K+ +
Sbjct: 484 MREGYQRVRKIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRTNKT 543
Query: 106 SPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFAS------ 159
S L+ T V + L +GI + + F L SNSQ++DN +
Sbjct: 544 STLLEKT-----------VNNYLHSGITVAGRNFGYLGSSNSQMRDNGAYFMEKYSSSQC 592
Query: 160 ---------------RPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSR-EALHVDS 203
P++ AA R+++G F I N+ K ARLGQ F SR +++D
Sbjct: 593 REYEAIHHVKPPITYNPKIQAA--RKNLGRFETIDNIPKMMARLGQCFTQSRLSGVNLDR 650
Query: 204 SDIEIIPDV----EVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGY 259
+ D+ ++ D Y FSDG+G +S A++V++ F PS FQ R+ G
Sbjct: 651 CTYMTMYDLTGGKNIKRD--EYTFSDGVGMMSLRFAQMVSQVMDFGKGVPSCFQFRFRGM 708
Query: 260 KGVVAVDPTSST--KLSL-------------------RKSMLKYKSESTSLDILANSKYQ 298
KGV+AV+P K SL R S +K+ S+ D + KY
Sbjct: 709 KGVIAVEPLLDMIRKWSLEFALEKPSDDVAWGLNCVFRPSQIKFISKRHPRDQVEIVKYS 768
Query: 299 ---PCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENT- 354
P LN+ I +L D V E + E ++ + + L L + T
Sbjct: 769 SPVPVSLNKPFINIL------DQVSEMQSLECHRRVTNRIEELLDRQMLLFAQQMVDETF 822
Query: 355 --NVLKEL----------LMCGYKPDVEPFLLMMLQ-TFRASNLLELRTRTRIFIQN-GR 400
N LKEL G+ EPF +++ + + S +LR Q+ GR
Sbjct: 823 CRNRLKELPRRVDIDYLRTTWGFTLSSEPFFRSLIKASIKFSITKQLRKEQIPIPQDLGR 882
Query: 401 AMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGD 460
+M+G +DETG L+ GQ+FVQ + + L ++ V+ G V++ KNPC+ GD
Sbjct: 883 SMLGVVDETGRLQYGQIFVQYTKN-----LALKLPPKNAARQVLTGTVLLTKNPCIVAGD 937
Query: 461 MRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPM 520
+R+ AVD+P LHHM D VVFP G RPH +E +GSDLDGD Y + WD +L+ P
Sbjct: 938 VRIFEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLDKNEDPF 997
Query: 521 DYTPAPEKVLARDMTIEDV-EEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELA 579
D+T +K ++ I+D+ E++ Y+ DS+G I N+H+ ++D AR C++LA
Sbjct: 998 DFTSEKQKSSFKEEEIDDLMREFYVKYLKLDSVGTISNSHLHNSDQYGLNARV--CMDLA 1055
Query: 580 KLSTIAVDFSKTG---------------VAATIPSGLRVEIYPDFMEKQDKT-CYESQRV 623
K + AVDF+K+G IP R E PD+ D T Y S R+
Sbjct: 1056 KKNCQAVDFTKSGQPPDELERKWRKDEETGEMIPPE-RCERVPDYHMGNDHTPMYVSPRL 1114
Query: 624 IGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNL 683
GKL+R K I + ++V + S D ++ +DG+E Y+ A + Y+ +L ++
Sbjct: 1115 CGKLFREFKAIDDVLKISEERDEQVEI-SIDENIMMDGYESYMHSARDELSRYNAQLRSM 1173
Query: 684 MDYYGIKTEAEILSGCIMEMAKSF-DKKRD-------LEAIIFAVKSLKKEARAWFNKK- 734
M+ YGIKTE E+ SGCI++M DK +D + I V +L K+ R F ++
Sbjct: 1174 MENYGIKTEGEVFSGCIVDMRNRISDKDQDDMSFYNTNQMIETKVTNLFKKYREHFFEEF 1233
Query: 735 ------NESDSSH----------------EDVYAKASAWYHVAYHPSYWGRYKEEGMNRT 772
N SS + + KA AWY Y + R ++
Sbjct: 1234 EGGWEANTESSSRIGSDANILQRQCRAPTQKMMRKAVAWYRACYEEARITRENKK----- 1288
Query: 773 HFLSFPWCIHDKLIEIKRGK 792
LSF W D + +K+ +
Sbjct: 1289 --LSFAWIAFDVIAMVKQTR 1306
>gi|17508365|ref|NP_493057.1| Protein RRF-2 [Caenorhabditis elegans]
gi|13655331|emb|CAC35914.1| Protein RRF-2 [Caenorhabditis elegans]
Length = 1579
Score = 312 bits (800), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 249/849 (29%), Positives = 401/849 (47%), Gaps = 134/849 (15%)
Query: 46 LDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVL 105
+++G V KV+ TP++V ++ PE+ + NRV+R++ + + LR++F D++ K+ +
Sbjct: 443 IEEGYQRVRKVIFTPTRVIYTPPEMIMGNRVLRNFDRDGTHVLRVTFRDDNNRKMRANAT 502
Query: 106 SPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA------- 158
L+ V L +GIV+ ++ F L S+SQ++DN +
Sbjct: 503 GELLDIC-----------VKKYLEHGIVVANRDFGFLGCSSSQMRDNGAYFMVKNTDNRH 551
Query: 159 -------SRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSR-EALHVDSSDIEIIP 210
S+ + +R +G+F I+N+ K ARLGQ F SR + + + +
Sbjct: 552 KNACKMNSKFKPNIDSVRNQLGNFLQIENIPKLMARLGQCFTQSRLTGVSLGPDNYCLTH 611
Query: 211 DVE--VEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP- 267
D+ +G Y FSDG+G +S E A+ V++ F PS FQ RY G KGV+A+DP
Sbjct: 612 DLSGGRSSNGSEYTFSDGVGMMSYEFAQEVSRLMSFGRSVPSCFQFRYRGMKGVLAIDPL 671
Query: 268 ---------------TSSTKLSLRKSMLKYKSESTSLDILANSKYQ-PCF--LNRQLITL 309
+ + K R S +K++ + D + KY P LN+ LI +
Sbjct: 672 LDKERNWQEKHGISLSKNIKCVFRPSQIKFEGKQILGDQVEMVKYSSPVLVALNKPLINI 731
Query: 310 LSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHE---ALELMSSGENTNVLKEL------ 360
L D V E + E ++ + + + + A ++ N LKE
Sbjct: 732 L------DQVSEMQSLECHRRITSRIEELMDLQTLSFAKQMTDEACFRNKLKEFPRRIDI 785
Query: 361 ----LMCGYKPDVEPFLLMMLQT---FRASNLLELRTRTRIFIQNGRAMMGCLDETGTLE 413
+ G+ EPF +++ F + L + + +I + GR+M+G +DETG L+
Sbjct: 786 DYLRTIWGFTLSNEPFFRSLVKASIKFAITKQL-FKEQIQIPSELGRSMLGVVDETGILQ 844
Query: 414 SGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLH 473
GQVFVQ + + R N + +V G V++ KNP + PGD+R+ AVD+P LH
Sbjct: 845 YGQVFVQYTKNHRNILPPRDSNRKVLGSEIVTGTVLLTKNPGIVPGDVRIFEAVDIPELH 904
Query: 474 HMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARD 533
H+ D VVFP G RPH +E +GSDLDGD Y V WD +L+ D+ A EK L +
Sbjct: 905 HLCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQKLLLERNEEAFDF--AVEKNL-QT 961
Query: 534 MTIEDVEEYFAD----YIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFS 589
ED+++ D Y+ D +G+I N+H+ ++D +R C+ LAK S AVDFS
Sbjct: 962 YEWEDIDDLMRDVYVEYLKKDLVGLIANSHLHNSDQYGLTSRV--CMNLAKKSCQAVDFS 1019
Query: 590 KTG---------------VAATIPSGLRVEIYPDFMEKQDKTC-YESQRVIGKLYRAVKD 633
K+G IP R E PD+ D Y S R+ GKL+R +
Sbjct: 1020 KSGKPPDELQTTWKTDDATGEMIPPE-RAERVPDYHVGSDHMPKYVSPRLCGKLFREFQG 1078
Query: 634 IAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEA 693
I + +++ ++ D + VDGFE+Y+ DA K Y+ +L + MD YGI++E
Sbjct: 1079 IDNAMKISEEKSEQYKIE-VDESIRVDGFEEYMEDAKKQLASYNGQLKSTMDTYGIQSEG 1137
Query: 694 EILSGCIMEMAKS-----------FDKKRDLE----AIIFAVKSLKKEARAWFNK----- 733
EI+SGCI+EM ++ R +E A++ +++ + F +
Sbjct: 1138 EIMSGCIIEMRNRISDSDQDDMSFYNTNRMIETKMTALVSKFRTIFFQQFGGFQEVCTLL 1197
Query: 734 ---KNESD-------SSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHD 783
NES+ + +E++ KA AWY Y + R + LSF W +D
Sbjct: 1198 PDAYNESNFFNFRCENPNEEIRKKAVAWYRACYECAKSTREPRK-------LSFAWIAYD 1250
Query: 784 KLIEIKRGK 792
+ +IK K
Sbjct: 1251 VIAKIKETK 1259
>gi|384495057|gb|EIE85548.1| hypothetical protein RO3G_10258 [Rhizopus delemar RA 99-880]
Length = 1125
Score = 311 bits (798), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 228/767 (29%), Positives = 363/767 (47%), Gaps = 77/767 (10%)
Query: 38 FLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDL 97
++T P + +G Y+ KVL+TP+ VY P + N + + D FL + F DE+L
Sbjct: 354 YITDPPEPIPEGYTYLRKVLITPTSVYPLQPILQKMNHLQYQFQRYSDRFLLIQFTDEEL 413
Query: 98 DKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMF 157
P+I S + ++ +Y R+ L+ G+++ + +E L S ++D+S W F
Sbjct: 414 --------GPIIPSPHPNQNDKLYNRIFKVLKRGLMLSGRYYEFLCSSLDDLRDHSCWFF 465
Query: 158 ASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDD 217
A EL DI +GDF++I V KY +GQ +L + ++E I D E +
Sbjct: 466 APTDELNRDDIIYWLGDFQEISCVPKYIQSVGQVMAPRLTSLEIKPKEVEEIDD--YEHN 523
Query: 218 GITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAV-DPTSSTKLSLR 276
GI Y S GK+S ++A ++ G YTP+ + G +G++ + + K+ LR
Sbjct: 524 GIIY--SSECGKMSPQVAREISSLLGLK-YTPNVVKFNLAGARGILMLSNYLQKRKIQLR 580
Query: 277 KSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILT 336
+ + +E +L+I SK + +L+R ITLL+ LGI VF++ EGV Q + ++
Sbjct: 581 TGQIHFNTERLTLEINKISKRERAYLDRYSITLLTGLGIHPVVFQQIT-EGVLQ-EYLMG 638
Query: 337 DPLKAHEALELMS---SGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTR 393
P K + LM S +L G+ +P + ++ F+ L E++ T+
Sbjct: 639 GPQKENFLNHLMDEYYSDHFAKCFNRVLCSGFLERSDPLITNLVLAFQNKVLDEIKGNTK 698
Query: 394 IFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKN 453
I+IQ+G +DETG+L +VF Q S S LD EL V+ GK ++ +N
Sbjct: 699 IYIQDGARAFAVMDETGSLGENEVFFQTSTSAG---LD-------SELNVIIGKCLIFRN 748
Query: 454 PCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP 513
+P D+ +++AVD P L + +++ A R N CS D D +
Sbjct: 749 SSCNPNDVMIVKAVDSPKLRSYTNVLIYSAVSSRHLLNICSHDDADEN------------ 796
Query: 514 PLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSN 573
++TP + DV ++ YI D +I +A V AD
Sbjct: 797 -------NFTP---------IKFGDVSKFIVKYISEDQTKLIKDAWVASADRHSTSIYHG 840
Query: 574 QCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKD 633
L A+ +I + ++KTG++ L PDFME+ Y+S++ +G ++R VK
Sbjct: 841 NALYFAQQLSIMIAYAKTGISVPTSEELYEYPIPDFMEQDSLMSYQSKKPLGYIHRIVKT 900
Query: 634 IAP-PTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTE 692
I P + + YDT + V+G +I DA K K YDN L LM YGI +E
Sbjct: 901 IEKRPYVSNRC--------EYDTRLYVEGMHKFILDARKTKMRYDNSLRLLMGEYGICSE 952
Query: 693 AEILSGCIMEMAK---SFDKKRDLEAIIFAVKSLKKEARAWFN-KKNESDSSH--ED--- 743
E +SGCI+ K DKK + I A K E + +F + + D H ED
Sbjct: 953 IEFISGCIVHFPKYTSESDKKELTQKIKMAYIQFKNEWKKYFEFEFYKEDVKHLSEDELN 1012
Query: 744 --VYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEI 788
V AKA+AWY+V YHP+ Y++ + LSFPW I D ++ I
Sbjct: 1013 CYVEAKAAAWYYVTYHPAENKEYQKNTEVLSRCLSFPWVIDDYIVYI 1059
>gi|170582151|ref|XP_001896001.1| RNA dependent RNA polymerase family protein [Brugia malayi]
gi|158596891|gb|EDP35156.1| RNA dependent RNA polymerase family protein [Brugia malayi]
Length = 1475
Score = 311 bits (797), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 247/828 (29%), Positives = 388/828 (46%), Gaps = 113/828 (13%)
Query: 47 DDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS 106
D+G V K ++TP+++ PE+ + NRV+R + + D+ LR+ F D+D L +
Sbjct: 464 DEGFQRVRKAVITPTRMLLVIPELLMGNRVLREFDESGDDALRIQFRDDDGAHLRRSRAG 523
Query: 107 PLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAA 166
I T V ++L G+ I D+ F LA SNSQ++DN + F +
Sbjct: 524 LYIIETT----------VHNSLLRGVYISDRHFVYLASSNSQMRDNGCYFFNDGDDGKVK 573
Query: 167 DIRESMGDFRDIKNVAKYAARLGQSFGSSREA-LHVDSSDIEIIPDVEVEDD--GITYCF 223
IR+ +G F D N+ K +R+GQ F S+E + + DV D G + F
Sbjct: 574 MIRDKLGKF-DHTNIPKLMSRMGQCFTQSKETDVTLKRRKYNKTHDVIGGKDSCGEPFIF 632
Query: 224 SDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKY 282
SDG+GK+S + AE +A + G PS FQ RY G KGV++VDP +L ++ L+
Sbjct: 633 SDGVGKLSEDFAEQIANDLGLAKCVPSCFQFRYRGLKGVLSVDPALRQRRLWAERNGLED 692
Query: 283 KSESTS-----------------------LDILANSKYQPCFLNRQLITLLSTLG----- 314
K T+ ++I+ S +LNR LI +L +
Sbjct: 693 KHAKTAKVNDLDIIFRPSQDKFHAPRKEIIEIVKYSSPTSVYLNRPLINILDQVSDMQGF 752
Query: 315 -----IRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDV 369
I + + R+ + DA++++ + E L N L + G+
Sbjct: 753 DVHSRIVNRIHGLLDRQLLKLSDALMSED-RCRERLAEFPRRINVQYLS--VARGFTLTQ 809
Query: 370 EPFLL-MMLQTFRASNLLEL-RTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRR 427
EPF +++ + R + +L + +I GR M G LDETG L+ GQVFVQ +
Sbjct: 810 EPFFHGLLIASVRFTLQKQLSKEHIQIPANLGRTMFGILDETGLLQYGQVFVQFTND--- 866
Query: 428 EFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKR 487
FL ++ +V+G V++ KNP + GD+R+ AVD+P L H+VD VVFP G R
Sbjct: 867 VFLKTP--PKAAAKTIVKGFVLITKNPSIVAGDVRIFEAVDLPELRHLVDVVVFPQHGPR 924
Query: 488 PHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPA--PEKVLARDMTIEDVEEYFAD 545
PHT+E +GSDLDGD Y V WD +++ PMD++ P +L D + ++ ++ +
Sbjct: 925 PHTDEMAGSDLDGDEYSVIWDDQMLFSHNEEPMDFSKLIRPPDILKEDEVVREMRRFYVE 984
Query: 546 YIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVA--------ATI 597
Y++ DS+G+I NA +V++D S+ C+ +A+ + +VDF KTG +
Sbjct: 985 YVMQDSIGIIANAFLVNSDTF--GIASDVCMSIAEKHSQSVDFPKTGQPPKPLVKEWSNG 1042
Query: 598 PSGL-----RVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQS 652
P G R E +PDFM K + Y S R++G+L+R ++ + TI + + +
Sbjct: 1043 PDGKMIPPERPERWPDFMCKTHEPSYVSTRLVGQLFRRIR-LIDDVLTITRAHETQSKVT 1101
Query: 653 YDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGC------------- 699
D +E G+E Y DA Y + LMD YGI+ E ++ SGC
Sbjct: 1102 VDPLLEYSGWESYENDATLNLIAYSAHIRALMDNYGIEDECQLYSGCFCKVRNRISDRDG 1161
Query: 700 --IMEMAKSFDKKRDLEAII--FAVKSLKKEARAWFNKKNESDSSHEDVY---------- 745
+ + SF +R L I F + + + D ++DV
Sbjct: 1162 DDMSQFNTSFIIERKLTNIFMCFRCNFFAEFGDFMSCTQQDDDLRNKDVIERRYCKYPTV 1221
Query: 746 ---AKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIKR 790
KASA+Y V Y KE+G LSFPW + D L +IK+
Sbjct: 1222 EMKKKASAYYIVCYRKV----MKEKG---ERLLSFPWIVWDILADIKK 1262
>gi|34447177|dbj|BAC84970.1| RNA-directed RNA Polymerase [Vigna unguiculata]
Length = 257
Score = 311 bits (797), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 160/254 (62%), Positives = 191/254 (75%), Gaps = 7/254 (2%)
Query: 539 VEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIP 598
VEEYF +YIVNDSLG+I NAH V AD +P KA S +CL+LAKL + AVDF KTGV A IP
Sbjct: 1 VEEYFTNYIVNDSLGIIANAHTVFADNQPRKAMSEECLKLAKLFSTAVDFPKTGVPAVIP 60
Query: 599 SGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKD--IAPPTATIKSFTKEVAMQSYDTD 656
L V+ YPDFMEK DK Y S VIGKLYR V + + +I SFT+EVA SYD D
Sbjct: 61 RVLYVKEYPDFMEKSDKETYISPNVIGKLYREVIEAISSSDGGSISSFTREVARTSYDFD 120
Query: 657 MEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAI 716
MEVDGF DY+ DAF +KT YD +LGNLMDYYGIKTEAEILSG I++++K F+K+RD EAI
Sbjct: 121 MEVDGFLDYVDDAFYHKTNYDYKLGNLMDYYGIKTEAEILSGNIIKLSKCFNKRRDAEAI 180
Query: 717 IFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLS 776
AV SL+K+AR+WFN+ N D D YAKASAWYHV YHPSYWG Y +GM R H+LS
Sbjct: 181 NKAVTSLRKDARSWFNEGNNGD----DEYAKASAWYHVTYHPSYWGCY-NQGMGRDHYLS 235
Query: 777 FPWCIHDKLIEIKR 790
FPWC+ +L++IK+
Sbjct: 236 FPWCVFPQLLQIKK 249
>gi|17506499|ref|NP_492132.1| Protein EGO-1 [Caenorhabditis elegans]
gi|8886068|gb|AAF80367.1| RNA-directed RNA polymerase related EGO-1 [Caenorhabditis elegans]
gi|14530420|emb|CAB01701.2| Protein EGO-1 [Caenorhabditis elegans]
Length = 1632
Score = 311 bits (796), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 250/859 (29%), Positives = 399/859 (46%), Gaps = 148/859 (17%)
Query: 46 LDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVL 105
+ +G V K++ TP++V + PE + NRV+R Y + LR++F D+D K+ +
Sbjct: 484 MREGYQRVRKIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRTNKT 543
Query: 106 SPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFAS------ 159
S ++ T V L+NGI + + F L SNSQ++DN +
Sbjct: 544 STMLEKT-----------VNQYLKNGITVAGRNFGYLGSSNSQMRDNGAYFMEKYSSSQC 592
Query: 160 ---------------RPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSR-EALHVDS 203
P++ AA R+++G F I N+ K ARLGQ F SR ++++
Sbjct: 593 REYERIYQIKPPITFNPKIQAA--RKNLGRFETIDNIPKMMARLGQCFTQSRLSGVNLER 650
Query: 204 SDIEIIPDVEVEDD--GITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKG 261
D+ + G Y FSDG+G +S A++V++ F PS FQ R+ G KG
Sbjct: 651 CTYMTTYDLTGGKNLKGDEYTFSDGVGMMSYRFAQMVSEVMDFGKGVPSCFQFRFRGMKG 710
Query: 262 VVAVDP---------------------TSSTKLSLRKSMLKYKSESTSLDILANSKYQ-- 298
V++++P + S R S +K+ S+ D + KY
Sbjct: 711 VISIEPLLDNLRQWSISYNISKPSDDSSWSLNCMFRPSQIKFISKRHPRDQVEIVKYSSP 770
Query: 299 -PCFLNRQLITLLSTLGIRDHVFEKK----QREGVAQLDAILTDPLKAHEALELMSSGEN 353
P LN+ I +L D V E + R +++ +L + + A +++
Sbjct: 771 VPVALNKPFINIL------DQVSEMQSLECHRRVTNRIEELLDRQMLSF-AQQMVDETFC 823
Query: 354 TNVLKEL----------LMCGYKPDVEPFLLMMLQ-TFRASNLLELRT-RTRIFIQNGRA 401
N LKEL G+ EPF +++ + + S +LR + I GR+
Sbjct: 824 RNRLKELPRRVDIDYLRTTWGFTLSSEPFFRSLIKASIKFSITRQLRKEQIPIPCDLGRS 883
Query: 402 MMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDM 461
M+G +DETG L+ GQ+FVQ + + L ++ V+ G V++ KNPC+ GD+
Sbjct: 884 MLGVVDETGRLQYGQIFVQYTKN-----LALKLPPKNAARQVLTGTVLLTKNPCIVAGDV 938
Query: 462 RVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMD 521
R+ AVD+P LHHM D VVFP G RPH +E +GSDLDGD Y + WD +L+ P D
Sbjct: 939 RIFEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLDKNEDPYD 998
Query: 522 YTPAPEKVLARDMTIEDV-EEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAK 580
+T +K ++ I+D+ E++ Y+ DS+G I N+H+ ++D AR C++LAK
Sbjct: 999 FTSEKQKASFKEDEIDDLMREFYVKYLKLDSVGQISNSHLHNSDQYGLNARV--CMDLAK 1056
Query: 581 LSTIAVDFSKTG---------------VAATIPSGLRVEIYPDFMEKQDKT-CYESQRVI 624
+ AVDF+K+G IP R E PD+ D T Y S R+
Sbjct: 1057 KNCQAVDFTKSGQPPDELERKWRKDEETGEMIPPE-RAERVPDYHMGNDHTPMYVSPRLC 1115
Query: 625 GKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLM 684
GKL+R K I + ++V + S D +++DG+ +Y+ A Y+ +L ++M
Sbjct: 1116 GKLFREFKAIDDVLKISEERDEQVEI-SIDETIKIDGYTEYMASAKNDLARYNAQLRSMM 1174
Query: 685 DYYGIKTEAEILSGCIMEMAKSF-DKKRD-------LEAIIFAVKSLKKEARAWFNKKNE 736
+ YGIKTE E+ SGCI++M DK +D + I + +L K+ R F ++ E
Sbjct: 1175 ENYGIKTEGEVFSGCIVDMRNRISDKDQDDMSFFNTNQMIETKLTNLFKKYREIFFEEFE 1234
Query: 737 S--------------DSS---------HEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTH 773
DS+ + KA AWY Y + R ++
Sbjct: 1235 GGWEGNTEAFSRYGRDSNILQRQCRAPTVQMMKKAVAWYRACYEEARITRENKK------ 1288
Query: 774 FLSFPWCIHDKLIEIKRGK 792
LSF W +D + ++K+ K
Sbjct: 1289 -LSFAWLAYDVIAKVKQDK 1306
>gi|384499712|gb|EIE90203.1| hypothetical protein RO3G_14914 [Rhizopus delemar RA 99-880]
Length = 595
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 190/482 (39%), Positives = 279/482 (57%), Gaps = 39/482 (8%)
Query: 330 QLDAILTDPLKAHEALELMSSGE--NTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLE 387
++D IL P +A L L ++ E +++ ++ G+ +P++ +L FR + L E
Sbjct: 7 EIDKILARPEEAIRVL-LNNADEAGTAHMMASIIQAGFLERGDPYIKNLLNLFRVNVLKE 65
Query: 388 LRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELG-VVEG 446
L+ + +I + G ++G +DETGTL+ G+V++Q DNS SG + V+ G
Sbjct: 66 LKKKAKILVPQGAFLLGVMDETGTLDEGEVYIQV--------WDNS---HSGTMKQVITG 114
Query: 447 KVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVC 506
+ V +NPC HPGD+RV+ AVD P+L H+V+ VVFPAKG R + CSG DLDGD Y +
Sbjct: 115 ECAVFRNPCFHPGDVRVVTAVDRPNLSHLVNVVVFPAKGYRDIPSMCSGGDLDGDDYTIF 174
Query: 507 WDHELIPPLQ-FPPMDYTPA-PEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHAD 564
WD +LIP + PMDYT + P KV D+ I D++ +F +YI ND+LG I NAH+ AD
Sbjct: 175 WDPKLIPTRKDVAPMDYTASDPRKV--EDVKIRDIQRFFVNYINNDNLGQIANAHLATAD 232
Query: 565 LEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVI 624
A +C+ LA+L + AVDF K+G AT+ L V +PDFM+K+DK Y S++V+
Sbjct: 233 FSEKGAMDGRCILLAQLHSEAVDFPKSGKPATLSEDLIVRTFPDFMQKKDKESYASKKVL 292
Query: 625 GKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLM 684
G ++R++ D + + T+E YDT M + G YI +A + +Y+ L LM
Sbjct: 293 GHIFRSI-DKSDYKNYMSKLTEEAV---YDTRMHLSGMAYYIGEARTLRRDYNRDLLALM 348
Query: 685 DYYGIKTEAEILSGCIMEMAKSFDKKRDLE---AIIFAVKSLKKEARAWFNK------KN 735
+ G++TEAEI+SG I++ K K E + + A+KS K R F K +
Sbjct: 349 NQNGVQTEAEIMSGYIIKWLKKGKSKTRYEQHDSTMKAIKSFKDLWRKEFEKEFMDDTQK 408
Query: 736 ESDSSHE-DVYAKASAWYHVAYHPSYWGR-YKEEGMNRTHFLSFPWCIHDKLIEI-KRGK 792
D +H + AKA+AWY+V YHPS R + E+G FLSFPW IHD + EI KR K
Sbjct: 409 TVDPAHRASMDAKAAAWYYVTYHPSERQRDFSEQG----GFLSFPWVIHDYVCEIAKRNK 464
Query: 793 QR 794
R
Sbjct: 465 HR 466
>gi|392886217|ref|NP_001250555.1| Protein RRF-1, isoform a [Caenorhabditis elegans]
gi|8886070|gb|AAF80368.1|AF159144_1 RRF-1 [Caenorhabditis elegans]
gi|14530419|emb|CAC42290.1| Protein RRF-1, isoform a [Caenorhabditis elegans]
Length = 1601
Score = 309 bits (792), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 247/846 (29%), Positives = 399/846 (47%), Gaps = 133/846 (15%)
Query: 48 DGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSP 107
+G V KV+ TP++V + PE + NRV+R + + LR++F D++ K+ S V
Sbjct: 459 EGYQRVRKVIFTPTRVIYIAPETIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRSNVTGK 518
Query: 108 LISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFAS-------- 159
L+ T + L +G+ I ++++ L SNSQ++DN +
Sbjct: 519 LLDRTANK-----------YLEHGVRIANREYGFLGCSNSQMRDNGAYFMMRFTDKQLDR 567
Query: 160 --RPELTAADI---------RESMGDFRDIKNVAKYAARLGQSFGSSR-EALHVDSSDIE 207
+ TA++I R +G F +I+NV K ARLGQ F SR + + D
Sbjct: 568 FYKCNPTASNINFKPKIDEVRFQLGRFSEIENVPKLMARLGQCFTQSRLTGVGLGRDDYC 627
Query: 208 IIPDVE--VEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAV 265
D+ +G Y FSDG+G +S + A+ V++ F PS FQIR+ G KGV+A+
Sbjct: 628 STYDLTGGRATNGSEYTFSDGVGMMSYQFAQEVSQAMQFGKAVPSCFQIRFRGNKGVIAI 687
Query: 266 DP-------------TSSTKLS---LRKSMLKYKSESTSLDILANSKYQPCFL---NRQL 306
+P +S K++ R S +K+++++ S D + K+ L N+
Sbjct: 688 EPFLDEIRKWALVNGVTSMKMAKCLFRPSQIKFQAKAISGDQIEMVKFSSAVLVALNKPF 747
Query: 307 ITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENT---NVLKEL--- 360
I +L D V E + + ++ + + + + E T N LKE
Sbjct: 748 INIL------DQVSEMQSLDCHKRITSRIEELMDRQILSFAKQMNEETFCRNKLKEFPRR 801
Query: 361 -------LMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQN--GRAMMGCLDETGT 411
M G+ EPF +++ ++ + + +I I + GR+M+G +DETG
Sbjct: 802 IDIDNLRTMWGFTLSSEPFFRSLIKASIKFSITKQLCKEQIQIPSELGRSMLGVVDETGR 861
Query: 412 LESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS 471
L+ GQ+FVQ + + +++ NN+ +V G V++ KNPC+ PGD+R+ AVD+P
Sbjct: 862 LQYGQIFVQYTKNYKKKLPPRDSNNKVHGSEIVTGTVLLTKNPCIVPGDVRIFEAVDIPE 921
Query: 472 LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKV-L 530
LHHM D VVFP G RPH +E +GSDLDGD Y V WD EL+ P D+ A EK+ +
Sbjct: 922 LHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQELLLERNEEPFDF--AVEKIKV 979
Query: 531 ARDMTIEDV--EEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDF 588
D DV E++ Y+ DS+G I N+H+ ++D +R C++LAK + AVDF
Sbjct: 980 PYDREKLDVLMREFYVTYLKLDSVGQISNSHLHNSDQYGLNSRV--CMDLAKKNCQAVDF 1037
Query: 589 SKTG--------------VAATIPSGLRVEIYPDF-MEKQDKTCYESQRVIGKLYRAVKD 633
+K+G V + E PDF M + Y S R+ GKL+R +
Sbjct: 1038 TKSGQPPDPLETKWRADPVTFEVIPPENPERIPDFHMGNERSPMYVSPRLCGKLFREFQA 1097
Query: 634 IAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEA 693
I + ++ ++ D + V GFE Y+ A K + Y+ +L ++M+ YGI++E
Sbjct: 1098 IDNVIKISEERDEQYNIE-LDETIFVTGFERYMESAQKQLSSYNGQLRSIMENYGIRSEG 1156
Query: 694 EILSGCIMEMAKSF-DKKRD--------------LEAIIFAVKSLKKEARAWFNKK---- 734
EI+SGCI+EM DK +D + +++ + E F K
Sbjct: 1157 EIMSGCIVEMRNRISDKDQDDMSFYNTNQMIETKMTSLVCKFRETFFEEFGGFTVKCTLL 1216
Query: 735 -NESDSSH----------EDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHD 783
N D+ + ++V KA AWY Y + + LSF W +D
Sbjct: 1217 PNAYDNGNCLNYRCEDPDQEVRKKAVAWYRACYECA-------QSTREVRKLSFAWIAYD 1269
Query: 784 KLIEIK 789
+ ++K
Sbjct: 1270 VIAKVK 1275
>gi|308476844|ref|XP_003100637.1| hypothetical protein CRE_20435 [Caenorhabditis remanei]
gi|308264655|gb|EFP08608.1| hypothetical protein CRE_20435 [Caenorhabditis remanei]
Length = 1685
Score = 309 bits (791), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 255/861 (29%), Positives = 402/861 (46%), Gaps = 156/861 (18%)
Query: 46 LDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVL 105
+ +G V K++ TP++V + PE + NRV+R Y + LR++F D+D K+ +
Sbjct: 538 MREGYQRVRKIVFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRTNKT 597
Query: 106 SPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM--------- 156
S L+ T V + LR+GI + + F L SNSQ++DN +
Sbjct: 598 SMLLDKT-----------VHTYLRDGITVAGRDFGYLGSSNSQMRDNGAYFMEKYSSSQC 646
Query: 157 --FASR----------PELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSR-------E 197
+ SR P++ AA R+++G F I N+ K ARLGQ F SR
Sbjct: 647 REYQSRTGVKPPIDFNPKIQAA--RKNLGRFETIDNIPKMMARLGQCFTQSRLSGVNLER 704
Query: 198 ALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYG 257
++ + D+ +V+ ++ Y FSDG+G +S A++V+ F PS FQ R+
Sbjct: 705 CTYMTTYDLTGGKNVKRDE----YTFSDGVGMMSHHFAQMVSHVMDFGKGVPSCFQFRFR 760
Query: 258 GYKGVVAVDP-----------------TSSTKLSL----RKSMLKYKSESTSLDILANSK 296
G KGV+AV+P + T +L R S +K+ S+ D + K
Sbjct: 761 GMKGVIAVEPLLDNIRQWFLENGIPEASEETSWNLNCVFRPSQIKFISKRHPRDQVEIVK 820
Query: 297 YQ---PCFLNRQLITLLSTLGIRDHVFEKK----QREGVAQLDAILTDPLKAHEALELMS 349
Y P LN+ I +L D V E + R +++ +L + + A +++
Sbjct: 821 YSSPVPVALNKPFINIL------DQVSEMQSLECHRRVTNRIEELLDRQMLSF-AQQMVD 873
Query: 350 SGENTNVLKEL----------LMCGYKPDVEPFLLMMLQ-TFRASNLLELRT-RTRIFIQ 397
N LKEL G+ EPF +++ + + S +LR + I +
Sbjct: 874 ETFCRNRLKELPRRIDIDYLRTSWGFTLSSEPFFRSLIKASIKFSITRQLRKEQIPIPSE 933
Query: 398 NGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLH 457
GR+M+G +DETG L+ GQ+FVQ + + L ++ V+ G V++ KNPC+
Sbjct: 934 LGRSMLGVVDETGRLQYGQIFVQYTKN-----LALKLPPKNAAREVLTGTVLLTKNPCIV 988
Query: 458 PGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQF 517
GD+RV AVD+P LHHM D VVFP G RPH +E +GSDLDGD Y + WD +L+
Sbjct: 989 AGDVRVFEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLDKNE 1048
Query: 518 PPMDYTPAPEKVLARDMTIEDV-EEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCL 576
P D+T +K ++ I+ + E++ Y+ DS+G I N+H+ ++D +R C+
Sbjct: 1049 IPFDFTSEKQKTEFKEEDIDALMREFYVKYLKLDSVGTISNSHLHNSDQYGLNSRV--CM 1106
Query: 577 ELAKLSTIAVDFSKTG---------------VAATIPSGLRVEIYPDFMEKQDKT-CYES 620
+LAK + AVDF+K+G IP R E PD+ D Y S
Sbjct: 1107 DLAKKNCQAVDFTKSGQPPDELEKKWRRDEETGEMIPPE-RAERVPDYHMGNDHAPMYVS 1165
Query: 621 QRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRL 680
R+ GKL+R K I + ++V + + D M +DG+++Y+ A + + Y+ +L
Sbjct: 1166 PRLCGKLFREFKAIDDVLKISEERDEQVEI-TIDETMMIDGYKEYMHSAREDLSRYNAQL 1224
Query: 681 GNLMDYYGIKTEAEILSGCIMEMAKSF-DKKRD-------LEAIIFAVKSLKKEARAWF- 731
++M+ YGIKTE E+ SGCI++M DK +D + I V +L K+ R F
Sbjct: 1225 RSMMENYGIKTEGEVFSGCIVDMRNRISDKDQDDMSFYNTNQMIETKVTNLFKKYREHFF 1284
Query: 732 -------NKKNESDSSH---------------EDVYAKASAWYHVAYHPSYWGRYKEEGM 769
E S H + KA AWY Y + R ++
Sbjct: 1285 EEFEGGWQANTEVTSRHGSETNILQRQCRAPSNRMMRKAVAWYRACYEEARITRENKK-- 1342
Query: 770 NRTHFLSFPWCIHDKLIEIKR 790
LSF W + D L +K+
Sbjct: 1343 -----LSFAWLMFDVLGMVKQ 1358
>gi|392886219|ref|NP_001250556.1| Protein RRF-1, isoform b [Caenorhabditis elegans]
gi|345107385|emb|CCD31066.1| Protein RRF-1, isoform b [Caenorhabditis elegans]
Length = 1520
Score = 309 bits (791), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 247/846 (29%), Positives = 399/846 (47%), Gaps = 133/846 (15%)
Query: 48 DGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSP 107
+G V KV+ TP++V + PE + NRV+R + + LR++F D++ K+ S V
Sbjct: 378 EGYQRVRKVIFTPTRVIYIAPETIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRSNVTGK 437
Query: 108 LISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFAS-------- 159
L+ T + L +G+ I ++++ L SNSQ++DN +
Sbjct: 438 LLDRTANK-----------YLEHGVRIANREYGFLGCSNSQMRDNGAYFMMRFTDKQLDR 486
Query: 160 --RPELTAADI---------RESMGDFRDIKNVAKYAARLGQSFGSSR-EALHVDSSDIE 207
+ TA++I R +G F +I+NV K ARLGQ F SR + + D
Sbjct: 487 FYKCNPTASNINFKPKIDEVRFQLGRFSEIENVPKLMARLGQCFTQSRLTGVGLGRDDYC 546
Query: 208 IIPDVE--VEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAV 265
D+ +G Y FSDG+G +S + A+ V++ F PS FQIR+ G KGV+A+
Sbjct: 547 STYDLTGGRATNGSEYTFSDGVGMMSYQFAQEVSQAMQFGKAVPSCFQIRFRGNKGVIAI 606
Query: 266 DP-------------TSSTKLS---LRKSMLKYKSESTSLDILANSKYQPCFL---NRQL 306
+P +S K++ R S +K+++++ S D + K+ L N+
Sbjct: 607 EPFLDEIRKWALVNGVTSMKMAKCLFRPSQIKFQAKAISGDQIEMVKFSSAVLVALNKPF 666
Query: 307 ITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENT---NVLKEL--- 360
I +L D V E + + ++ + + + + E T N LKE
Sbjct: 667 INIL------DQVSEMQSLDCHKRITSRIEELMDRQILSFAKQMNEETFCRNKLKEFPRR 720
Query: 361 -------LMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQN--GRAMMGCLDETGT 411
M G+ EPF +++ ++ + + +I I + GR+M+G +DETG
Sbjct: 721 IDIDNLRTMWGFTLSSEPFFRSLIKASIKFSITKQLCKEQIQIPSELGRSMLGVVDETGR 780
Query: 412 LESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS 471
L+ GQ+FVQ + + +++ NN+ +V G V++ KNPC+ PGD+R+ AVD+P
Sbjct: 781 LQYGQIFVQYTKNYKKKLPPRDSNNKVHGSEIVTGTVLLTKNPCIVPGDVRIFEAVDIPE 840
Query: 472 LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKV-L 530
LHHM D VVFP G RPH +E +GSDLDGD Y V WD EL+ P D+ A EK+ +
Sbjct: 841 LHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQELLLERNEEPFDF--AVEKIKV 898
Query: 531 ARDMTIEDV--EEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDF 588
D DV E++ Y+ DS+G I N+H+ ++D +R C++LAK + AVDF
Sbjct: 899 PYDREKLDVLMREFYVTYLKLDSVGQISNSHLHNSDQYGLNSRV--CMDLAKKNCQAVDF 956
Query: 589 SKTG--------------VAATIPSGLRVEIYPDF-MEKQDKTCYESQRVIGKLYRAVKD 633
+K+G V + E PDF M + Y S R+ GKL+R +
Sbjct: 957 TKSGQPPDPLETKWRADPVTFEVIPPENPERIPDFHMGNERSPMYVSPRLCGKLFREFQA 1016
Query: 634 IAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEA 693
I + ++ ++ D + V GFE Y+ A K + Y+ +L ++M+ YGI++E
Sbjct: 1017 IDNVIKISEERDEQYNIE-LDETIFVTGFERYMESAQKQLSSYNGQLRSIMENYGIRSEG 1075
Query: 694 EILSGCIMEMAKSF-DKKRD--------------LEAIIFAVKSLKKEARAWFNKK---- 734
EI+SGCI+EM DK +D + +++ + E F K
Sbjct: 1076 EIMSGCIVEMRNRISDKDQDDMSFYNTNQMIETKMTSLVCKFRETFFEEFGGFTVKCTLL 1135
Query: 735 -NESDSSH----------EDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHD 783
N D+ + ++V KA AWY Y + + LSF W +D
Sbjct: 1136 PNAYDNGNCLNYRCEDPDQEVRKKAVAWYRACYECA-------QSTREVRKLSFAWIAYD 1188
Query: 784 KLIEIK 789
+ ++K
Sbjct: 1189 VIAKVK 1194
>gi|440476070|gb|ELQ44707.1| RNA-dependent rna polymerase [Magnaporthe oryzae Y34]
gi|440486893|gb|ELQ66719.1| RNA-dependent rna polymerase [Magnaporthe oryzae P131]
Length = 1338
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 191/595 (32%), Positives = 308/595 (51%), Gaps = 36/595 (6%)
Query: 47 DDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS 106
+ L ++ +V+VTP+++ GPEI NRV+R YP D F+R+ F DE+ + S
Sbjct: 448 NSNLTHIYRVVVTPTRITLHGPEIENKNRVLRKYPKHQDCFVRVQFCDENTQDIR---FS 504
Query: 107 PLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM----FASRPE 162
P IS + +Y R L L GI I + + L FS+S ++ +S W F +
Sbjct: 505 PKIS------YDRVYSRFLDVLNRGIQIAGRVYNFLGFSHSSLRTHSAWFSAPFFDQGSQ 558
Query: 163 LTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEII---PDVEVEDDGI 219
T A I +S+G+F I+ AK AAR+GQ+F + + + D+E++ PD+ D
Sbjct: 559 HTHASIIKSLGEFSSIQCPAKCAARIGQAFSETPSVVDLRDHDVEVVTHFPDITNRDG-- 616
Query: 220 TYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKS 278
+ FSDG+GKIS + I+ +N P+ FQ+R+GG KG++A+D T TK+ R S
Sbjct: 617 SRVFSDGVGKISESMMHIIWENIPMKKNAPTCFQVRWGGAKGMLALDMTLKGTKVCFRDS 676
Query: 279 MLKYKSEST-SLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILT 336
M K++S+ L+I + SK P LNRQ+I +L +G F + Q + +L +I
Sbjct: 677 MTKFESDDVHQLEICDSGSKPIPLVLNRQMIKILEDMGTDRSWFMRLQSYRLQELRSITA 736
Query: 337 DPLKAHEALELMSSGENTNVLKELLMC---GYKPDVEPFLLMMLQTFRASNLLELRTRTR 393
L+ + G+ + K + G + F+ +++ L L+ + R
Sbjct: 737 SAYNTWHFLDAQNVGQAIKLGKFINFADKHGMDYRTDDFMRSVVEAVVLRELRLLKHKAR 796
Query: 394 IFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKN 453
I ++ G+ + G +DETG L G+V + S+ E D + G++ V+V ++
Sbjct: 797 IPVKYGKTLFGIIDETGYLREGEVVISFGFSQTGE--DQPTPPQDGQI------VIVTRS 848
Query: 454 PCLHPGDMRVLRAVDVPSLH---HMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHE 510
P LHPGD+++ + V P H H ++C++F G+R ++ SG DLDGD+Y V WD +
Sbjct: 849 PALHPGDIQIAKQVVPPPSHPLSHHINCIIFSQHGQRDLPSQLSGGDLDGDIYNVIWDGD 908
Query: 511 LIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKA 570
+P F P DY + + R + D+ ++F D++ D LGVI HV+ AD D
Sbjct: 909 AMPKETFDPADYPRVEAQDIGRRVVSADMAQFFIDFMKTDHLGVIATRHVILADQLDDGT 968
Query: 571 RSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIY-PDFMEKQDKTCYESQRVI 624
S +C LA L + AVDFSK+G+ A + + R + PDF+ T Y + I
Sbjct: 969 LSQECRTLAGLHSTAVDFSKSGIPAELKALPRANKFRPDFLSPGPITNYHDKGKI 1023
>gi|389628880|ref|XP_003712093.1| RNA-dependent RNA polymerase [Magnaporthe oryzae 70-15]
gi|351644425|gb|EHA52286.1| RNA-dependent RNA polymerase [Magnaporthe oryzae 70-15]
Length = 1292
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 191/595 (32%), Positives = 308/595 (51%), Gaps = 36/595 (6%)
Query: 47 DDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS 106
+ L ++ +V+VTP+++ GPEI NRV+R YP D F+R+ F DE+ + S
Sbjct: 448 NSNLTHIYRVVVTPTRITLHGPEIENKNRVLRKYPKHQDCFVRVQFCDENTQDIR---FS 504
Query: 107 PLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM----FASRPE 162
P IS + +Y R L L GI I + + L FS+S ++ +S W F +
Sbjct: 505 PKIS------YDRVYSRFLDVLNRGIQIAGRVYNFLGFSHSSLRTHSAWFSAPFFDQGSQ 558
Query: 163 LTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEII---PDVEVEDDGI 219
T A I +S+G+F I+ AK AAR+GQ+F + + + D+E++ PD+ D
Sbjct: 559 HTHASIIKSLGEFSSIQCPAKCAARIGQAFSETPSVVDLRDHDVEVVTHFPDITNRDG-- 616
Query: 220 TYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKS 278
+ FSDG+GKIS + I+ +N P+ FQ+R+GG KG++A+D T TK+ R S
Sbjct: 617 SRVFSDGVGKISESMMHIIWENIPMKKNAPTCFQVRWGGAKGMLALDMTLKGTKVCFRDS 676
Query: 279 MLKYKSEST-SLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILT 336
M K++S+ L+I + SK P LNRQ+I +L +G F + Q + +L +I
Sbjct: 677 MTKFESDDVHQLEICDSGSKPIPLVLNRQMIKILEDMGTDRSWFMRLQSYRLQELRSITA 736
Query: 337 DPLKAHEALELMSSGENTNVLKELLMC---GYKPDVEPFLLMMLQTFRASNLLELRTRTR 393
L+ + G+ + K + G + F+ +++ L L+ + R
Sbjct: 737 SAYNTWHFLDAQNVGQAIKLGKFINFADKHGMDYRTDDFMRSVVEAVVLRELRLLKHKAR 796
Query: 394 IFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKN 453
I ++ G+ + G +DETG L G+V + S+ E D + G++ V+V ++
Sbjct: 797 IPVKYGKTLFGIIDETGYLREGEVVISFGFSQTGE--DQPTPPQDGQI------VIVTRS 848
Query: 454 PCLHPGDMRVLRAVDVPSLH---HMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHE 510
P LHPGD+++ + V P H H ++C++F G+R ++ SG DLDGD+Y V WD +
Sbjct: 849 PALHPGDIQIAKQVVPPPSHPLSHHINCIIFSQHGQRDLPSQLSGGDLDGDIYNVIWDGD 908
Query: 511 LIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKA 570
+P F P DY + + R + D+ ++F D++ D LGVI HV+ AD D
Sbjct: 909 AMPKETFDPADYPRVEAQDIGRRVVSADMAQFFIDFMKTDHLGVIATRHVILADQLDDGT 968
Query: 571 RSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIY-PDFMEKQDKTCYESQRVI 624
S +C LA L + AVDFSK+G+ A + + R + PDF+ T Y + I
Sbjct: 969 LSQECRTLAGLHSTAVDFSKSGIPAELKALPRANKFRPDFLSPGPITNYHDKGKI 1023
>gi|241633126|ref|XP_002410398.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
gi|215503415|gb|EEC12909.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
Length = 529
Score = 305 bits (782), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 207/538 (38%), Positives = 287/538 (53%), Gaps = 24/538 (4%)
Query: 168 IRESMGDFRDIKNVAKYAARLGQSFGSSREALHV--DSSDIEIIPDV---EVEDDGITYC 222
IR MGDF +I +VAK AR+GQ F S+ E++ V D +E PD+ + G +
Sbjct: 1 IRRWMGDFSNIPSVAKKMARMGQCFSSTEESVKVPLDGKAVEDRPDIVGGKHPRSGRPFI 60
Query: 223 FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLK 281
FSDGIG IS L E V K PSA QIRY GYKG++ V+P KL LR+SM K
Sbjct: 61 FSDGIGMISQPLLEKVCKKLEMA-QIPSAIQIRYAGYKGMLCVNPLLPGDKLVLRESMRK 119
Query: 282 YK-SESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLK 340
+ S S SL+++ S +P LNR LIT+L LG+ VF Q++ V L
Sbjct: 120 FTCSSSDSLEVIKVSAPRPVCLNRPLITILEQLGVPSRVFLCLQQKMVLMFADALVCEST 179
Query: 341 AHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFI--QN 398
A + L SG + L M G PF+ +L T S + L T++RI +
Sbjct: 180 ALQVLCTYLSGALP--FRRLRMHGLCLTRNPFVRSLLYTVYKSTMDGLHTKSRIAVPLNK 237
Query: 399 GRAMMGCLDETGTLESGQVFVQCSA-SRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLH 457
GR M+G LDET TL+ GQVFVQ +A E D+ + G V+V K PCLH
Sbjct: 238 GRNMLGVLDETDTLKYGQVFVQYTALGPDTEGQDDGLPKT--RIIFCTGAVLVTKCPCLH 295
Query: 458 PGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI-PPLQ 516
PGD+R AVDVP+LHH+ DCVVFPA+G RPH NE +GSDLDGD Y V W +L+ P
Sbjct: 296 PGDVRKFTAVDVPALHHVKDCVVFPARGPRPHPNEMAGSDLDGDEYVVIWKKDLLFPGPN 355
Query: 517 FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCL 576
M ++ A +E + ++ +YI ND++G++ NAH+ AD D S QCL
Sbjct: 356 RKAMVFSDHSAPCDANKSLLEGMIQFVCNYIKNDNVGIMSNAHLAWADSLEDGIFSKQCL 415
Query: 577 ELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEK-QDKTCYESQRVIGKLYRAVKDIA 635
++A+ + +DF+KTG + + + YPDFMEK K Y S+RV+G LYR + +
Sbjct: 416 QIARKISTCLDFAKTGETSYLNKDEKPIQYPDFMEKGSSKDTYRSKRVLGHLYRLHRSLE 475
Query: 636 PPTATIKSFTKEVAMQSYDTD---MEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIK 690
T + ++ D D + G+E+Y A + Y +++ + YGIK
Sbjct: 476 AVVGT----DFQTCVEDGDADCSLFALPGWEEYAAAAESVRANYASQMARIRRQYGIK 529
>gi|393908637|gb|EJD75145.1| CBR-RRF-1 protein [Loa loa]
Length = 1689
Score = 305 bits (782), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 243/828 (29%), Positives = 383/828 (46%), Gaps = 113/828 (13%)
Query: 47 DDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS 106
++G V K ++TP+++ PE+ + NRV+R + + D LR+ F D+D L +
Sbjct: 580 NEGFQRVRKAVITPTRMLLVVPELLMGNRVLREFDEHGDRALRIQFRDDDGTHLRRNKVG 639
Query: 107 PLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAA 166
I T V + L +GI I + F LA SNSQ++DN + F +
Sbjct: 640 SYIIETT----------VHNCLLHGIYISNSHFVYLASSNSQMRDNGCYFFNDGDDGRVG 689
Query: 167 DIRESMGDFRDIKNVAKYAARLGQSFGSSREA-LHVDSSDIEIIPDVEVEDD--GITYCF 223
IRE +G F D N+ K +R+GQ F S+E+ + + DV D G + F
Sbjct: 690 KIREKLGKF-DRTNIPKLMSRMGQCFTQSKESDVVLKRKKYNKTYDVIGGKDSCGEPFIF 748
Query: 224 SDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK----------- 272
SDG+GK+S + AE +AK+ G PS FQ R G KGV++VDP +
Sbjct: 749 SDGVGKLSEDFAERIAKDLGLNKCVPSCFQFRLRGLKGVLSVDPALRQRRLWAECNDVED 808
Query: 273 ------------LSLRKSMLKYKSESTSL-DILANSKYQPCFLNRQLITLLSTLG----- 314
+ R S K+ + + +I+ S P LNR I +L +
Sbjct: 809 KNRKTEKVNDLDVLFRPSQDKFHAPRKEMIEIVKYSSPTPVCLNRPFINILDQVSDMQGF 868
Query: 315 -----IRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDV 369
I + R+ + DA++++ K E L N L L G+
Sbjct: 869 DVHRRIVHRIHGLLDRQLLQLSDALMSEN-KCRERLAEFPRRINVQYLS--LARGFTLTQ 925
Query: 370 EPFLL-MMLQTFRASNLLEL-RTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRR 427
EPF +++ + R + +L + + +I GR M G LDETG L+ GQVFVQ + +
Sbjct: 926 EPFFRGLLIASVRFTLQKQLFKEQIQIPANLGRTMFGILDETGLLQYGQVFVQFTNN--- 982
Query: 428 EFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKR 487
+ +++ +V+G V++ KNP + GD+RV A+D+P L H+VD VVFP G R
Sbjct: 983 --VSLKTPSKAAAKTIVKGPVLITKNPSIVAGDVRVFEAIDLPELRHLVDVVVFPQHGPR 1040
Query: 488 PHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPA--PEKVLARDMTIEDVEEYFAD 545
PHT+E +GSDLDGD Y V WD +++ PMD++ P +L D + ++ ++
Sbjct: 1041 PHTDEMAGSDLDGDEYSVIWDDQMLFDHNEEPMDFSKLVRPPDLLEEDEVVREMRRFYVK 1100
Query: 546 YIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVA--------ATI 597
YI+ DS+GVI NA + ++D+ S+ C +A+ + +VDF KTG +
Sbjct: 1101 YIMQDSVGVIANAFLANSDMF--GIASDICTSIAEKHSQSVDFPKTGWPPRPLVKEWSKG 1158
Query: 598 PSGL-----RVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQS 652
P G R E +PDFM K + Y S R++G+L+R ++ + TI + ++ +
Sbjct: 1159 PDGKIMPPERPERWPDFMCKTHEPSYVSTRLVGQLFRRIR-LVHDVLTITAVSEGHSQIV 1217
Query: 653 YDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGC------------- 699
D +E G+E Y +A Y + LMD YGI+ E ++ SGC
Sbjct: 1218 VDPLLEYHGWESYENNANLNLIAYSAHIKALMDNYGIEDEYQLFSGCFSKIRNRISDRDT 1277
Query: 700 --IMEMAKSFDKKRDLEAIIFAVK-SLKKEARAWFNKKNESDSSHE-------------- 742
+ + +F ++ L I + + S E + + D H
Sbjct: 1278 DDMSQFNTNFFIEQKLTNIFMSFRSSFFAEFGDFMSCTEPDDDFHSKDMTERRYCKCPTM 1337
Query: 743 DVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIKR 790
++ KASA+Y V Y + G + LSFPW D L EIK+
Sbjct: 1338 EMKKKASAYYIVCYRKAVNGIGER-------LLSFPWIAWDILAEIKK 1378
>gi|312082346|ref|XP_003143407.1| RNA dependent RNA polymerase [Loa loa]
Length = 1312
Score = 305 bits (782), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 243/828 (29%), Positives = 383/828 (46%), Gaps = 113/828 (13%)
Query: 47 DDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS 106
++G V K ++TP+++ PE+ + NRV+R + + D LR+ F D+D L +
Sbjct: 216 NEGFQRVRKAVITPTRMLLVVPELLMGNRVLREFDEHGDRALRIQFRDDDGTHLRRNKVG 275
Query: 107 PLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAA 166
I T V + L +GI I + F LA SNSQ++DN + F +
Sbjct: 276 SYIIETT----------VHNCLLHGIYISNSHFVYLASSNSQMRDNGCYFFNDGDDGRVG 325
Query: 167 DIRESMGDFRDIKNVAKYAARLGQSFGSSREA-LHVDSSDIEIIPDVEVEDD--GITYCF 223
IRE +G F D N+ K +R+GQ F S+E+ + + DV D G + F
Sbjct: 326 KIREKLGKF-DRTNIPKLMSRMGQCFTQSKESDVVLKRKKYNKTYDVIGGKDSCGEPFIF 384
Query: 224 SDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK----------- 272
SDG+GK+S + AE +AK+ G PS FQ R G KGV++VDP +
Sbjct: 385 SDGVGKLSEDFAERIAKDLGLNKCVPSCFQFRLRGLKGVLSVDPALRQRRLWAECNDVED 444
Query: 273 ------------LSLRKSMLKYKSESTSL-DILANSKYQPCFLNRQLITLLSTLG----- 314
+ R S K+ + + +I+ S P LNR I +L +
Sbjct: 445 KNRKTEKVNDLDVLFRPSQDKFHAPRKEMIEIVKYSSPTPVCLNRPFINILDQVSDMQGF 504
Query: 315 -----IRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDV 369
I + R+ + DA++++ K E L N L L G+
Sbjct: 505 DVHRRIVHRIHGLLDRQLLQLSDALMSEN-KCRERLAEFPRRINVQYLS--LARGFTLTQ 561
Query: 370 EPFLL-MMLQTFRASNLLEL-RTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRR 427
EPF +++ + R + +L + + +I GR M G LDETG L+ GQVFVQ + +
Sbjct: 562 EPFFRGLLIASVRFTLQKQLFKEQIQIPANLGRTMFGILDETGLLQYGQVFVQFTNN--- 618
Query: 428 EFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKR 487
+ +++ +V+G V++ KNP + GD+RV A+D+P L H+VD VVFP G R
Sbjct: 619 --VSLKTPSKAAAKTIVKGPVLITKNPSIVAGDVRVFEAIDLPELRHLVDVVVFPQHGPR 676
Query: 488 PHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPA--PEKVLARDMTIEDVEEYFAD 545
PHT+E +GSDLDGD Y V WD +++ PMD++ P +L D + ++ ++
Sbjct: 677 PHTDEMAGSDLDGDEYSVIWDDQMLFDHNEEPMDFSKLVRPPDLLEEDEVVREMRRFYVK 736
Query: 546 YIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVA--------ATI 597
YI+ DS+GVI NA + ++D+ S+ C +A+ + +VDF KTG +
Sbjct: 737 YIMQDSVGVIANAFLANSDMF--GIASDICTSIAEKHSQSVDFPKTGWPPRPLVKEWSKG 794
Query: 598 PSGL-----RVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQS 652
P G R E +PDFM K + Y S R++G+L+R ++ + TI + ++ +
Sbjct: 795 PDGKIMPPERPERWPDFMCKTHEPSYVSTRLVGQLFRRIR-LVHDVLTITAVSEGHSQIV 853
Query: 653 YDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGC------------- 699
D +E G+E Y +A Y + LMD YGI+ E ++ SGC
Sbjct: 854 VDPLLEYHGWESYENNANLNLIAYSAHIKALMDNYGIEDEYQLFSGCFSKIRNRISDRDT 913
Query: 700 --IMEMAKSFDKKRDLEAIIFAVK-SLKKEARAWFNKKNESDSSHE-------------- 742
+ + +F ++ L I + + S E + + D H
Sbjct: 914 DDMSQFNTNFFIEQKLTNIFMSFRSSFFAEFGDFMSCTEPDDDFHSKDMTERRYCKCPTM 973
Query: 743 DVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIKR 790
++ KASA+Y V Y + G + LSFPW D L EIK+
Sbjct: 974 EMKKKASAYYIVCYRKAVNGIGE-------RLLSFPWIAWDILAEIKK 1014
>gi|341891713|gb|EGT47648.1| hypothetical protein CAEBREN_06166 [Caenorhabditis brenneri]
Length = 1640
Score = 305 bits (780), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 240/856 (28%), Positives = 400/856 (46%), Gaps = 140/856 (16%)
Query: 46 LDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVL 105
+ DG V KV+ TP++V + PE + NRV+R + + LR++F D++ K+ +
Sbjct: 481 IHDGFQIVRKVVFTPTRVIYVAPEAIMGNRVLRRFDKDGTKVLRITFRDDNNGKMRTNTT 540
Query: 106 SPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMF-------- 157
L+ T + R G+ + ++ F L SNSQ++D+ +
Sbjct: 541 EELLEKTANK-----------FFREGVRVANRDFGFLGCSNSQMRDSGAYFMLKATPSQL 589
Query: 158 ---------ASRPELT-----AADIRESMGDFRDIKNVAKYAARLGQSFGSSR-EALHVD 202
A+R +L ++R ++G F +++NV K AR+GQ F SR + ++
Sbjct: 590 ERFYRKNPRATREQLLNYKPLIDEVRLNLGKFSEVENVPKMIARMGQCFTQSRLTGVALE 649
Query: 203 SSDIEIIPDVEVEDDG--ITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYK 260
+ I D E + TY FSDG+G +S A+I+A++ + PS FQIR+ G K
Sbjct: 650 RKNYCKIFDYEGGKNSKQATYTFSDGVGMMSCRFAKIMAQSMNYDRSVPSCFQIRFRGNK 709
Query: 261 GVVAVDPT-----------------SSTKLSLRKSMLKYKS---ESTSLDILANSKYQPC 300
GV+A++P ++ R S +K+++ E ++++ + P
Sbjct: 710 GVIAMEPQLDDLRNWAIRHALEEIIPEINVAFRPSQIKFQAKHIEGDQIEMVKPAGPVPV 769
Query: 301 FLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKEL 360
LN+ LI +L + V K+ V++++ ++ +++ A ++ N LKE
Sbjct: 770 SLNKPLINILDQVSEMQGVVCHKRM--VSRIEELMDRQVQSF-AKQMNDETYCRNRLKEF 826
Query: 361 ----------LMCGYKPDVEPFLLMMLQT-FRASNLLELRT-RTRIFIQNGRAMMGCLDE 408
G+ EPF +++ + S +LR + +I + GR + G +DE
Sbjct: 827 PRRVDIDYLRTTWGFTLSREPFFRSLIKAAIKFSITKQLRKEQIQIPKELGRTLFGVVDE 886
Query: 409 TGTLESGQVFVQCSASRRRE----FLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVL 464
TG L+ GQVFVQ S++ + D S N VV GK++++KNPC+ PGD+R+
Sbjct: 887 TGRLQYGQVFVQYSSNILNKHPVRLADQSVQNGV----VVTGKILISKNPCIVPGDVRIF 942
Query: 465 RAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTP 524
AVD+P LHHM D VVFP G RPH +E +GSDLDGD Y V WD +++ P D++
Sbjct: 943 EAVDIPELHHMCDVVVFPQAGPRPHPDEMAGSDLDGDEYSVIWDPQMLLEWNEPAFDFSV 1002
Query: 525 APEKVLARDMTIEDV-EEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLST 583
+++ ++++ E++ Y+ DS+G I NAH+ ++D S C+ LAK ++
Sbjct: 1003 EKQRIEWDPNEVDNLMREFYVQYLKLDSVGQISNAHLHNSDQY--GLMSTVCMNLAKKNS 1060
Query: 584 IAVDFSKTGVAAT---------------IPSGLRVEIYPDF-MEKQDKTCYESQRVIGKL 627
AVDF+K+G+ +P E PDF M + Y S R+ G+L
Sbjct: 1061 QAVDFTKSGIPPADMTRKWEKDPITDEMVPPE-NPERIPDFHMGNERNPQYVSPRLCGRL 1119
Query: 628 YRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYY 687
+R + I I E+ D D+ + G+E ++ +A Y+ +L ++M+ Y
Sbjct: 1120 FREFQAID-NVIKISEEKDELYDIEIDEDIMIYGYERFMVEARTELANYNGQLRSIMETY 1178
Query: 688 GIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAVKSLKKEARAW-----FNKK-------- 734
GI TE EI+SGCI+EM K D + + F +L E R F +K
Sbjct: 1179 GIATEGEIMSGCIIEMRNRISDK-DQDDMSFFNTNLMIETRVTTLICRFREKFFEPFGGY 1237
Query: 735 ------------NESD-------SSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFL 775
N S S+ + KA AWY Y + R T L
Sbjct: 1238 QSCCSIIENADENNSTCLAYRCRSATNSMMQKAVAWYRACYEFAQSNR-------ETRKL 1290
Query: 776 SFPWCIHDKLIEIKRG 791
SF W ++D + +++
Sbjct: 1291 SFAWIVYDVIAKVREA 1306
>gi|396482889|ref|XP_003841572.1| similar to rna-dependent rna polymerase [Leptosphaeria maculans JN3]
gi|312218147|emb|CBX98093.1| similar to rna-dependent rna polymerase [Leptosphaeria maculans JN3]
Length = 1248
Score = 305 bits (780), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 206/603 (34%), Positives = 312/603 (51%), Gaps = 43/603 (7%)
Query: 26 EEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEID 85
E + Y LSR+ +AL K +TP+ + GP+ +SNRV+R Y +
Sbjct: 424 ERELTGYDLSRKQRKHNHLAL------TYKATITPTGMLLRGPDWDVSNRVLRKYGKHTE 477
Query: 86 NFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFS 145
F+R+ F DED S P S +YER LRNGI + ++F+ L FS
Sbjct: 478 CFMRVFFADEDG---LSVFFDPRASQDR------VYERFRGVLRNGITVAGRRFDFLGFS 528
Query: 146 NSQVKDNSMWMFA----SRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHV 201
++ ++ + W + A DI E +GDF I+ A+ AAR+GQ+F + ++ V
Sbjct: 529 HASLRSHQAWFMTPFIKDGISICARDIIEDLGDFSHIRCSARCAARIGQAFSDTIFSVRV 588
Query: 202 DSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIV--AKNCGFTIYTPSAFQIRYGGY 259
S V+V+ +G FSDG G IS EL V A P+ QIRY G
Sbjct: 589 PDSAYVTESKVDVKRNG--RYFSDGCGTISLELMRKVWNALPPERREQRPTVLQIRYRGA 646
Query: 260 KGVVAVDPT-SSTKLSLRKSMLKYKSESTSLDI-LANSKYQP--CFLNRQLITLLSTLGI 315
KGV+++D + +L +R+SM KY ++ D+ L + Y+P FLN Q I +L LG+
Sbjct: 647 KGVLSLDTSLVGEQLHVRQSMTKYIAKEGWKDLELCGAAYKPLTVFLNHQFIKILEDLGV 706
Query: 316 RDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSG--ENTNVLKELL-MCGYKPDVEPF 372
+ F+ Q E V L I P+ A LE S T L EL+ G + F
Sbjct: 707 PERNFKAIQNEAVDTLKLITEHPINAASFLEYSHSSVYARTPRLFELMHQIGLSFHADRF 766
Query: 373 LLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDN 432
L +++ SNL L+ R RI I G + G +DETG L+ G+V+V + +
Sbjct: 767 LTDIVEVAAMSNLRSLKYRARIPISQGYLLYGIMDETGILKEGEVYVATKSH-------D 819
Query: 433 SCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS---LHHMVDCVVFPAKGKRPH 489
+ ++S ++ ++ +V++ + P LHPGD+++++AVDVP L + +CVVF +G R
Sbjct: 820 AIGHKSRKI-LIGDRVIITRAPALHPGDVQIVKAVDVPEYSPLRALHNCVVFSQQGARDL 878
Query: 490 TNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVN 549
++ SG DLDGD++ + +D LIP PP DY P K L R + + D+ ++F +Y+
Sbjct: 879 PSQLSGGDLDGDLFHIIYDSRLIPDFTVPPADYKSEPPKDLGRPVQVNDMVDFFVEYMNM 938
Query: 550 DSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVE--IYP 607
D LG I N H + AD++P+ R C+ LA+L++ AVDFSK+G A I R I P
Sbjct: 939 DRLGQISNKHKIRADIKPNGTRDPDCILLAQLASDAVDFSKSGNPADINKVPRGSDWIRP 998
Query: 608 DFM 610
DFM
Sbjct: 999 DFM 1001
>gi|308476834|ref|XP_003100632.1| CRE-RRF-1 protein [Caenorhabditis remanei]
gi|308264650|gb|EFP08603.1| CRE-RRF-1 protein [Caenorhabditis remanei]
Length = 1680
Score = 304 bits (779), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 247/851 (29%), Positives = 390/851 (45%), Gaps = 130/851 (15%)
Query: 46 LDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVL 105
+ DG V K++ TP++V + PE + NRV+R + + +R++F D+ +L +
Sbjct: 508 IRDGFQRVRKIVFTPTRVIYIAPETIMGNRVLRRFDKDGTRVIRVTFRDDSNGRLRA--- 564
Query: 106 SPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM-----FASR 160
S+T EE I + + G+ + ++ + L SNSQ++DN + F R
Sbjct: 565 ----STTGEE---LIDKTAMKFFSEGVKVANRDYGFLGCSNSQMRDNGAYFMEKSTFGQR 617
Query: 161 PELTAAD--------------IRESMGDFRDIKNVAKYAARLGQSFGSSR-EALHVDSSD 205
L + +R +G F I+NV K ARLGQ F SR + ++ SD
Sbjct: 618 QRLLKNNPNANLIGFQPKILEVRRHLGRFETIENVPKMMARLGQCFTQSRLTGVELERSD 677
Query: 206 IEIIPDVEVEDD----GITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKG 261
D E G Y +SDG+G +S A+ +A++ F I PS QIR+ G KG
Sbjct: 678 YCTTFDYEGAKTKPIVGKCYTYSDGVGIMSYGFAQRLARSMNFGISVPSCLQIRFRGMKG 737
Query: 262 VVAVDP--------------------TSSTKLSLRKSMLKYKSESTSLDILANSKYQ-PC 300
V+A+DP K R S +K+ ++S D + K+ P
Sbjct: 738 VIAIDPFYDEVSEWAQANGIQSYDVPNLDLKCQFRPSQIKFPAKSIPGDQIEMVKFSSPV 797
Query: 301 F--LNRQLITLLSTLGIRDHV---------FEKKQREGVAQLDAILTDPLKAHEALELMS 349
LN+ I +L + + E+ + + D L L+
Sbjct: 798 LVALNKPFINILDQVSEMQSIECHRRVTGRIEELMDRQIVSFAKQMNDELYCRNKLKEFP 857
Query: 350 SGENTNVLKELLMCGYKPDVEPFLLMMLQ-TFRASNLLELRT-RTRIFIQNGRAMMGCLD 407
+ + LK M G+ EPF +++ + + S +LR + +I + GR+M+G +D
Sbjct: 858 RRIDIDFLKR--MWGFTLCNEPFFRSLIKASIKFSITKQLRKEQIQIPKELGRSMLGIVD 915
Query: 408 ETGTLESGQVFVQCSASRRREFLDNSCNNRSGELG--VVEGKVVVAKNPCLHPGDMRVLR 465
ETG L+ GQ+FVQ + + + S G VV G V++ KNPC+ GD+R+
Sbjct: 916 ETGRLQYGQIFVQYTRNSNEKLPPRSNMQHMKVQGSQVVTGTVLLTKNPCIVTGDVRIFE 975
Query: 466 AVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYT-P 524
AVD+P LHH+ D VVFP G RPH +E +GSDLDGD Y V WD +L+ P D+T
Sbjct: 976 AVDIPELHHLCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQQLLLDKNEAPFDFTVE 1035
Query: 525 APEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTI 584
E R+M + + E++ Y+ DS+G I N H+ ++D +R C++LAK +
Sbjct: 1036 KKEMPYDREMIDQLMHEFYVKYLKLDSVGTISNNHLHNSDQYGLNSRV--CMDLAKKNCQ 1093
Query: 585 AVDFSKTG---------------VAATIPSGLRVEIYPDFMEKQDKT-CYESQRVIGKLY 628
AVDF+K+G +P L E PD+ D Y + R+ G+L+
Sbjct: 1094 AVDFTKSGEPPAPLTKKWARDPETGEAVPPEL-AERVPDYHVGNDNAPVYVTPRLCGRLF 1152
Query: 629 RAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYG 688
R + I I +E D ++++G+E+Y+T A K Y+ +L ++M+ YG
Sbjct: 1153 REFQAID-DVIRISEEREEQYEIEIDESIKMEGYENYLTCAEKELANYNGQLRSIMETYG 1211
Query: 689 IKTEAEILSGCIMEMAKSF-DKKRD-------LEAIIFAVKSLKKEARAWFNKK------ 734
I++E EI+SGCI+EM DK +D + I + SL E R F ++
Sbjct: 1212 IQSEGEIMSGCILEMRNRISDKDQDDMSFFNTNQMIETRMTSLVCEFRKRFFEEFGGYLA 1271
Query: 735 ------NESDSSHEDVY----------AKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFP 778
N D+++ Y KA+AWY Y + R T LSF
Sbjct: 1272 VCTQLPNTFDANNSLTYRCEMPSELMMQKATAWYRACYKFAQKSR-------ETRKLSFG 1324
Query: 779 WCIHDKLIEIK 789
W +D L ++K
Sbjct: 1325 WIAYDVLAKVK 1335
>gi|299470095|emb|CBN78124.1| RNA-dependent RNA polymerase 1 [Ectocarpus siliculosus]
Length = 1102
Score = 303 bits (775), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 224/694 (32%), Positives = 337/694 (48%), Gaps = 131/694 (18%)
Query: 49 GLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPL 108
G + V + VTP +V PE +SN V R + + D FL ++FVDE++ +L LSPL
Sbjct: 260 GNVMVPRASVTPLRVVCQPPEQEMSNGVTRRFAEHSDRFLGVNFVDENMGRLQ---LSPL 316
Query: 109 ISSTN-----------EERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMF 157
++ ++ +RH T + + L + +V+ + SQ++ ++ + +
Sbjct: 317 LAPSDCWSIGLACTPFGQRHQTFLKVHPALLVSCVVLS----PPVRPRKSQLRGHACFFY 372
Query: 158 ASRPELTAADIRES---------MGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI 208
A E+ I ES MGD I V K+AARLGQS S+ + V + ++
Sbjct: 373 AEGGEVD--QISESGSEPAVFHWMGDMSGIDVVGKHAARLGQSLSSTTSTVEVPPALKKL 430
Query: 209 IPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTP--SAFQIRYGGYKGVVAVD 266
+PD + Y F+DG G +S LA VA G ++ P SAFQIR GG KG++AV
Sbjct: 431 VPDKKAG----PYEFTDGCGMMSEGLAREVADVLGHSVSQPPPSAFQIRMGGCKGMLAVW 486
Query: 267 PTS---------STKLSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRD 317
P S K+ +R SM K+ SE +L+++ ++ PC+LNRQ ITLL TLG+ D
Sbjct: 487 PDSVMRSVSGRGGYKVLVRPSMQKFPSERNTLEVIQYARQLPCYLNRQFITLLGTLGVPD 546
Query: 318 HVFEKKQREGVAQLDAI----LTDPLKAHEALEL---MSSGENTN------VLKELLM-- 362
V E++ V+ LD + L+DP +A AL ++SG T + + L M
Sbjct: 547 KVIEERYSAMVSTLDKVLRTMLSDPAEAEMALVRYYNITSGGKTGRKQVGPLWEALAMVR 606
Query: 363 CGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCS 422
G EPFL +L R +++LR RTRIF+ + ++G +DETG L+ GQ
Sbjct: 607 AGINIRTEPFLQSVLHATRDKAMIDLRHRTRIFVPDASCLLGIVDETGFLQPGQA----- 661
Query: 423 ASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFP 482
S LG C RA + + C
Sbjct: 662 ---------------SDSLG------------CRSVNHYTANRASIMTNADRFGQCT--- 691
Query: 483 AKGKRPHTNECSGSDLDGDVYFVCWDHELIPP---------------LQFPPMDYTPAPE 527
P ++ SG DLDGD+Y V WD +L+PP FP M Y P PE
Sbjct: 692 -----PEPSKMSGGDLDGDLYSVVWDQDLLPPEREGVAGVQGDSENGFNFPAMGYEP-PE 745
Query: 528 K------VLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKL 581
K + + ++++ ++F YI ND+LG I NAH+V ADL P AR ++CL+LA L
Sbjct: 746 KPKTSASSSGKGVDMKEIADFFLKYIQNDNLGKIANAHLVRADLSPLGARCDECLQLAAL 805
Query: 582 STIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATI 641
+ AVDF K+GV A P L+V+ YPDFM K+D Y S+++IG+L+R PP
Sbjct: 806 HSKAVDFPKSGVPAVFPDELKVDSYPDFMCKEDNMTYLSKKLIGRLFRDT----PPAGAA 861
Query: 642 KSFTKEVAMQSYDTDMEVD------GFEDYITDA 669
++ + + E+D G+ED++ +A
Sbjct: 862 NPQRRQQQDERFLGGFELDQSLLAPGYEDFLEEA 895
>gi|341880571|gb|EGT36506.1| hypothetical protein CAEBREN_02888 [Caenorhabditis brenneri]
Length = 1640
Score = 302 bits (774), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 237/855 (27%), Positives = 400/855 (46%), Gaps = 138/855 (16%)
Query: 46 LDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVL 105
+ DG V KV+ TP++V + PE + NRV+R + + LR++F D++ K+ +
Sbjct: 481 IHDGFQIVRKVVFTPTRVIYVAPEAIMGNRVLRRFDKDGTKVLRITFRDDNNSKMRTNTT 540
Query: 106 SPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA------- 158
L+ T + R G+ + ++ F L SNSQ++D+ +
Sbjct: 541 EELLEKTANK-----------FFREGVRVANRDFGFLGCSNSQMRDSGAYFMLKATPGQL 589
Query: 159 ----------SRPELTAA-----DIRESMGDFRDIKNVAKYAARLGQSFGSSR-EALHVD 202
+R +L + ++R ++G F +++NV K AR+GQ F SR + ++
Sbjct: 590 ERFYRKYPRHTREQLLSYKPWIDEVRLNLGKFSEVENVPKMIARMGQCFTQSRLTGVALE 649
Query: 203 SSDIEIIPDVEVEDDG--ITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYK 260
+ I D E + Y FSDG+G +S A+I+A++ + PS FQIR+ G K
Sbjct: 650 RKNYCKIFDYEGGKNSKKAAYTFSDGVGMMSCRFAKIMAQSMNYDRSVPSCFQIRFRGNK 709
Query: 261 GVVAVDPT-----------------SSTKLSLRKSMLKYKS---ESTSLDILANSKYQPC 300
GV+A++P K++ R S +K+++ E ++++ + P
Sbjct: 710 GVIAMEPQLDDLRNWSIRHQLDDLIPEIKVAFRPSQIKFQAKHIEGDQIEMVKPAGPVPV 769
Query: 301 FLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKEL 360
LN+ LI +L + V K+ V++++ ++ +++ A ++ N LKE
Sbjct: 770 SLNKPLINILDQVSEMQGVLCHKRM--VSRIEELMDRQVQSF-AKQMNDETYCRNRLKEF 826
Query: 361 ----------LMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQN--GRAMMGCLDE 408
G+ EPF +++ ++ + + +I I GR + G +DE
Sbjct: 827 PRRVDIDYLRTTWGFTLSREPFFRSLIKAAIKFSITKQLRKEQIPIPKELGRTLFGVVDE 886
Query: 409 TGTLESGQVFVQCSASRRRE----FLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVL 464
TG L+ GQVFVQ S++ + D S N VV G ++++KNPC+ PGD+R+
Sbjct: 887 TGRLQYGQVFVQYSSNILNKHPVRLADQSVQNGV----VVTGPILISKNPCIVPGDVRIF 942
Query: 465 RAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTP 524
AVD+P LHHM D VVFP G RPH +E +GSDLDGD Y V WD +++ P D++
Sbjct: 943 EAVDIPELHHMCDVVVFPQSGPRPHPDEMAGSDLDGDEYSVIWDPQMLLEWNEPAFDFSV 1002
Query: 525 APEKVLARDMTIEDV-EEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLST 583
+++ ++++ E++ Y+ DS+G I NAH+ ++D S C+ LAK ++
Sbjct: 1003 EKQRIEWDPNEVDNLMREFYVQYLKLDSVGQISNAHLHNSDQY--GLMSTVCMNLAKKNS 1060
Query: 584 IAVDFSKTGV-AATIPSGLR-------------VEIYPDF-MEKQDKTCYESQRVIGKLY 628
AVDF+K+G+ A + R E PDF M + Y S R+ G+L+
Sbjct: 1061 QAVDFTKSGIPPAEMTRDWRRDPITDEMVPPENPERIPDFHMGNERNPQYVSPRLCGRLF 1120
Query: 629 RAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYG 688
R + I I E+ D D+ + G+E ++ +A Y+ +L ++M+ YG
Sbjct: 1121 REFQAID-NVIKISEEKDELYDIEIDEDIMIYGYERFMVEARTELANYNGQLRSIMETYG 1179
Query: 689 IKTEAEILSGCIMEMAKSFDKKRDLEAIIFAVKSLKKEARAW-----FNKK--------- 734
I TE EI+SGCI+EM K D + + F +L E R F +K
Sbjct: 1180 IATEGEIMSGCIIEMRNRISDK-DQDDMSFFNTNLMIETRVTTLICRFREKFFEQFGGYQ 1238
Query: 735 ---------NESDSS---------HEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLS 776
+E++SS + KA AWY Y + R T LS
Sbjct: 1239 SCCSIIENADENNSSCLAYRCRSATNSMMQKAVAWYRACYEFAQSNR-------ETRKLS 1291
Query: 777 FPWCIHDKLIEIKRG 791
F W ++D + +++
Sbjct: 1292 FAWIVYDVIAKVREA 1306
>gi|119196681|ref|XP_001248944.1| hypothetical protein CIMG_02715 [Coccidioides immitis RS]
Length = 1155
Score = 302 bits (774), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 223/731 (30%), Positives = 352/731 (48%), Gaps = 96/731 (13%)
Query: 51 IYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLIS 110
+ V++ VTPS Y GP I NRV+R Y D I+NFLR+ FVDE D +Y + L
Sbjct: 414 VKVHRAQVTPSGTYLYGPNIETKNRVLRQYNDHINNFLRVEFVDETGDPVYFDPQASL-- 471
Query: 111 STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA-----SRPELTA 165
H +ER L+ GI IG F L FS+S ++ + W A S A
Sbjct: 472 ------HNIFHERFKGVLKQGIKIGGCHFSFLGFSHSSLRSQTCWFVAPFTTSSGERFDA 525
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSD 225
I + +G F I + AK AAR+GQ+F ++ ++ + D + + +++ +G FSD
Sbjct: 526 QSIIQGLGSFSHIYSPAKLAARIGQTFSETQTSIAI-PEDAVFLNEPDMKRNG--RVFSD 582
Query: 226 GIGKISAELA-EIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYK 283
G+G S L +I ++ P+ FQIR+ G KG+V++D +L LR+SM+K+
Sbjct: 583 GVGTFSPRLLYKIWSEYALREKVKPTVFQIRFAGAKGMVSLDTRLKGEQLRLRESMVKFS 642
Query: 284 SEST-SLDILANS-KYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKA 341
+ ++++ + + P +LN Q+I +L LG+ F K Q + + +L ++ K
Sbjct: 643 ARRAFNIEVCGSGIRALPFYLNAQIIKILEDLGVPPTGFIKLQSDEIERLLSVGKSASKT 702
Query: 342 HEALELMSSGENTNV--LKELLM-CGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQN 398
+ LE S + V L E+L G+ D +PFL ++Q + +L+ R RI +
Sbjct: 703 SQFLEESSIAKEVRVPWLIEILHGLGFHHDQDPFLRSVVQLAIFFKMRDLKYRARIRVPE 762
Query: 399 GRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHP 458
+ G +DETG L G++F C+ FL N G +V +V+V + P LHP
Sbjct: 763 AVTLYGIMDETGYLNEGEIF--CT------FL----NEEGGREILVRDQVIVTRAPALHP 810
Query: 459 GDMRVLRAVDVPS---LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPL 515
GD++ +AVDVP L + +CV+F G R + SG DLDGD+Y V +D L+PP
Sbjct: 811 GDVQYAKAVDVPENSPLRSLHNCVIFSQHGFRDLPSMLSGGDLDGDLYNVIYDERLMPPC 870
Query: 516 QFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQC 575
+PP +Y EK+L R++ +D+ ++F ++ D LG I H AD P C
Sbjct: 871 TYPPANYPKVEEKLLDREVVRDDIIDFFVTFMQQDQLGRIATIHQAIADQRPAGTLDQDC 930
Query: 576 LELAKLSTIAVDFSKTGVA---ATIPSGLRVEIYPDFM---------------------- 610
L LA+L ++AVDFSK+G+ IP R YPDFM
Sbjct: 931 LLLAELHSVAVDFSKSGIPVDLTRIPK--RPRYYPDFMAPSPRIKIADSIEVVEEEQYLA 988
Query: 611 --------EKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDM----- 657
E+ + Y+S R++G +YR + + + + ++ D +
Sbjct: 989 EDEDDDEDERPQRRYYKSNRILGVMYRNINE----QEFLNAVRNASKLRRDDNTLLNAIW 1044
Query: 658 -----EVDGFE--DYITDAFKYKTEYDNRLGNLMDYYGIK------TEAEILSGCIMEMA 704
E +GF+ + D K K Y+++L +M Y TE E++ G I+
Sbjct: 1045 DYVASETEGFQWDHLVEDGRKVKDIYEDKLREIMQQYSKTPWKSSLTEVEVVMGSILGQ- 1103
Query: 705 KSFDKKRDLEA 715
S +RD EA
Sbjct: 1104 NSKQSRRDKEA 1114
>gi|408389379|gb|EKJ68835.1| hypothetical protein FPSE_11001 [Fusarium pseudograminearum CS3096]
Length = 1277
Score = 302 bits (773), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 204/629 (32%), Positives = 321/629 (51%), Gaps = 66/629 (10%)
Query: 51 IYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLIS 110
I+V K LVTP+++ GPE NRV+R Y D D FLR+ F +ED L P +
Sbjct: 438 IWVFKALVTPTRLLLDGPEAESKNRVLRKYADYNDYFLRVLFCEEDGQDLR---FHPKVD 494
Query: 111 STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA----SRPELTAA 166
NE IY + + +GI I +KF+ L FS+S ++ +S W A +L +
Sbjct: 495 --NE----PIYSQFRRMMDHGIQIAGRKFDFLGFSHSSLRSHSAWFSAPFVDKDHQLQSP 548
Query: 167 D-IRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDI--EIIPDVEVEDDGITYCF 223
+ I +++GDFRDI+ AK AAR+GQ+F + A+ + ++I IPDV+ ED + F
Sbjct: 549 EAILQALGDFRDIRVPAKCAARIGQAFSETPYAVPISENNIVPRYIPDVKSEDG--SRVF 606
Query: 224 SDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSL--RKSMLK 281
SDG+G IS E E + P+ QIR+GG KG++++D K+ ++SM+K
Sbjct: 607 SDGVGTISQEALESIWPYLSMNSAAPTCLQIRWGGCKGMLSLDTRLEGKVFCIRQESMMK 666
Query: 282 YKSESTSLDILANSKYQPC--FLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPL 339
+KSE T + ++ +P LNRQ+I +L +G RD F + Q + L + D
Sbjct: 667 FKSEDTGELGICDTASKPLRLVLNRQMIKILEDMGTRDEWFFELQNNALDILRNVTADAT 726
Query: 340 KAHEALELMSSGENTNVLKELLMCGYKPDVE----PFLLMMLQTFRASNLLELRTRTRIF 395
LE + G N L L+ K D++ FL ++ L L+ + RI
Sbjct: 727 NTSSFLEHHAIGINMG-LPRLVKQLEKMDIDYRRDKFLKAAVEHVVLRELRLLKHKARIP 785
Query: 396 IQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPC 455
+ NG + G +DETG L+ G+V+V + R N R + + +G+++V ++P
Sbjct: 786 VDNGVTLFGIMDETGFLKEGEVYVTYDKTYGRN------NGRGIKSTLTDGEIIVTRSPA 839
Query: 456 LHPGDMRVLRAVDVP---SLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI 512
LHPGD+++++ V P SL + +C++F KGKR + SG DLDGD+Y + WD E +
Sbjct: 840 LHPGDIQLVKQVTPPQGHSLRSLQNCIIFSQKGKRDLPSMLSGGDLDGDIYNIIWDPEAM 899
Query: 513 PPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARS 572
P F P DY + L R + +D+ ++F +++ D LGVI HV+ AD +
Sbjct: 900 PSRVFRPADYPRVTPQPLDRQVEPKDIADFFINFMRTDILGVIATRHVILADYNDLGSID 959
Query: 573 NQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIY-PDF---------------------- 609
C+ LA+L + AVDFSKTG+ + + R + PDF
Sbjct: 960 RDCIALAELHSTAVDFSKTGIPVNVKALPRAPRFRPDFLATAPPLKLYDKGQLAHIGEDD 1019
Query: 610 -------MEKQDKTCYESQRVIGKLYRAV 631
M + Y+S++++G+LYR V
Sbjct: 1020 EMDNADDMARTKTNYYQSEKILGQLYRNV 1048
>gi|226291786|gb|EEH47214.1| predicted protein [Paracoccidioides brasiliensis Pb18]
Length = 1257
Score = 302 bits (773), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 245/768 (31%), Positives = 368/768 (47%), Gaps = 163/768 (21%)
Query: 49 GLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLDKLYSTVLSP 107
G Y+ VTPS +Y+ P I NR+ R Y + D FLR+ F DE ++ K++
Sbjct: 399 GYYYMRSAEVTPSTIYYKPPSIDTGNRIFRRYLEYADRFLRVRFTDEKNMGKIFP----- 453
Query: 108 LISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAAD 167
S+ N +Y RV T++NGI IGD+ +E LAFSN+Q+++++ + FAS P LTAA+
Sbjct: 454 -YSNANIVCMNEVYTRVTLTMKNGITIGDRCYEFLAFSNAQLREHAAYFFASLPHLTAAN 512
Query: 168 IRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGI 227
I ++I+ ++E +G Y FSDG+
Sbjct: 513 I-------------------------------------LQIVEIDDIERNG--YTFSDGV 533
Query: 228 GKISAELAEIVAKNCGFTIYT-----PSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKY 282
G IS LA+++ F I T PS FQ R GG K
Sbjct: 534 GLISKFLAQMIQSE--FAIETLSGEPPSVFQFRLGGCK---------------------- 569
Query: 283 KSESTSLDILANSKYQPCF--LNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLK 340
+ L+I+ +S + CF LNRQLI +LS+LGI D +F KK L A+L
Sbjct: 570 -APHNGLEIIRHSSF--CFASLNRQLIIVLSSLGIPDEMFVKK-------LQAML----- 614
Query: 341 AHEALEL-MSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNG 399
E LEL M+S E + +LQT+ N + L + G
Sbjct: 615 --ENLELAMTSQEQA-------------------IDLLQTYVDPNQMTL-----VLADMG 648
Query: 400 RAMMGCLDETGTLES---------GQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVV 450
++GCLDETG+L+ G + Q F+ S + G V+EG ++
Sbjct: 649 AFLLGCLDETGSLKGYFRSKRPGGGATYEQKLDCLPEIFVQIS-RHSEGTYEVIEGLCIL 707
Query: 451 AKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHE 510
A+NP LHPGD+RV++AVD+P LHH+ D VV P G R + CSG DLDGD Y V WD +
Sbjct: 708 ARNPSLHPGDIRVVKAVDIPGLHHLKDVVVLPQTGDRDIASMCSGGDLDGDDYVVIWDQD 767
Query: 511 LIPPLQF-PPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDK 569
L+P F PMDY+ KVL RD+T++D+ ++F Y+ ND L I AH+ AD D
Sbjct: 768 LLPKDWFEEPMDYSAPKSKVLDRDVTVDDIIKFFVSYMQNDRLPQIALAHLTIADYSDDG 827
Query: 570 ARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQ---DKTCYESQRVIGK 626
+ +CL LA L + AVD++K+G+ + LR + +P FME++ + Y S++++G+
Sbjct: 828 VQDEKCLRLATLHSAAVDYNKSGIPVRMNQDLRPKKWPHFMERKFAMKDSQYTSRKILGQ 887
Query: 627 LYRAVKDIAPPT-ATIKSFTKEVAM----QSYDTDMEVDGFEDYITDAFKYKTEYDNRLG 681
LY DIA ++S + + + + + + E+D E ++ A + K EYD L
Sbjct: 888 LY----DIAGGVYLNLQSHSAKGRLPFDQRILNANFEID--EKLLSFAKELKGEYDADLR 941
Query: 682 NLMDYYGIKTEAEILSGCIMEMAKSFDKKRDL----EAIIFAVKSLKKEARAWFNKKNES 737
+M + I++E I ++ + +K + +A KSL A A + +E
Sbjct: 942 RIMAQHEIQSEDYKFHEEIGRISSALRQKFRMLCHEKAGGKDFKSLAPLAIAMYRVTSEQ 1001
Query: 738 DSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKL 785
AKA+A H P +EE R +SFPW + L
Sbjct: 1002 MEK-----AKAAAHSHCT--PG-----EEE---RMPLISFPWVLQPIL 1034
>gi|312081788|ref|XP_003143174.1| hypothetical protein LOAG_07593 [Loa loa]
Length = 1450
Score = 301 bits (772), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 246/832 (29%), Positives = 390/832 (46%), Gaps = 149/832 (17%)
Query: 48 DGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSP 107
+G V KV++TP++V PE+ + NRV+R++ + + LR+ F D+D +P
Sbjct: 365 EGYQRVRKVVITPTRVLLVVPELLMGNRVLRTFDKDGNGALRIQFRDDDG--------TP 416
Query: 108 LISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAAD 167
F L SNSQ++DN + + A
Sbjct: 417 -----------------------------STFVYLGSSNSQMRDNGCYFYDDGKGGQAHK 447
Query: 168 IRESMGDFRDIKNVAKYAARLGQSFGSSREAL-----HVDSSDIEIIPDVEVEDDGITYC 222
IRE +G F D N+ K +R+GQ F ++ H + ++I + + Y
Sbjct: 448 IREQLGKF-DRCNIPKMMSRMGQCFTQAKRCTVTLKRHKYNKTYDVIGGRDT--NQAFYI 504
Query: 223 FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-------------- 268
FSDG GK+S E AE +A + G PS +QIR+ G KGV++VDP+
Sbjct: 505 FSDGAGKVSKEFAEKIALDIGLGTSVPSCYQIRHRGIKGVLSVDPSLDQRKHWAAANNVV 564
Query: 269 SSTKLS---------LRKSMLKYKSESTS-LDILANSKYQPCFLNRQLITLLSTL-GIRD 317
+ K++ R S K+K+ ++I+ S LNR +I++L + G++
Sbjct: 565 DNNKMTNKQNDLAVLFRPSQDKFKAPRDEYIEIVKYSTPTSVCLNRPMISILDQVSGMQG 624
Query: 318 HVFEKKQREGVAQLDAI----LTDPLKAHEAL--ELMSSGENTNVLKELLMCGYKPDVEP 371
++ R+ + L I L D L + E +L NV + L G+ EP
Sbjct: 625 FSVHERIRKRIHDLLDIQMTQLADMLMSEEKCREKLNELPWRVNVSRLTLARGFALTQEP 684
Query: 372 FLLMMLQTFRASNLLELRTRTRIFI--QNGRAMMGCLDETGTLESGQVFVQCSASRRREF 429
F +L+ L +L + +I + GR+M G +DETG L+ GQVFVQC+ S
Sbjct: 685 FFRSLLRANIKCTLKKLIAKVQIQVPPHFGRSMFGVMDETGQLQWGQVFVQCTRS----- 739
Query: 430 LDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPH 489
+ ++S ++ GKV++ KNPC+ GD+RV AVD+P LHH+VD VVFP G RPH
Sbjct: 740 IWLKTPSKSAAKIILVGKVMLTKNPCIVAGDVRVFEAVDIPELHHLVDVVVFPQHGPRPH 799
Query: 490 TNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAP--EKVLARDMTIEDVEEYFADYI 547
+E +GSDLDGD Y V WD EL+ PP+D+T + K++ + ++ ++F +YI
Sbjct: 800 PDEMAGSDLDGDEYSVIWDPELMFEHNEPPLDFTKSASDNKIVEEEQVDLEMRKFFVNYI 859
Query: 548 VNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGL------ 601
DS+G I NA +V+ADL S C+ +A+ + AVDF KTG A PS L
Sbjct: 860 KQDSIGTISNAFLVNADLY--GITSEVCINIARKHSKAVDFPKTGNA---PSPLTRQWTQ 914
Query: 602 ----------RVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQ 651
R E +PDFM K + Y S R++G+LYR ++ + + V +
Sbjct: 915 GKNGNILPPERAERWPDFMCKNHEPSYISSRLVGQLYRRIRLLDDALNLTAAMEGSVTIM 974
Query: 652 SYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKR 711
D D+E G+E Y A Y + + ++M+ YGI+ E ++ SG I + ++ R
Sbjct: 975 -LDPDLEYPGWEQYQNVAKIQLDSYHSHIRSIMENYGIEDEGQLFSGFI-SVIRNRISDR 1032
Query: 712 DLEAIIFAVKS--LKKEARAWFNK---------------------KNESDSSHE------ 742
D + + F + ++K+ A F N+S ++ E
Sbjct: 1033 DTDDMSFYNTNHIIEKKVSAVFRAYRHRFFDEFGGFLESTLPDYDDNQSGNAQERRICIH 1092
Query: 743 ---DVYAKASAWYHVAYHPSYWGRYKEEGMNRTH-FLSFPWCIHDKLIEIKR 790
D+ KASA+Y + Y+ M+ ++ LSF W + D L +K+
Sbjct: 1093 PSLDMKRKASAYYILC--------YRNASMDTSYRILSFGWLVWDILCHVKQ 1136
>gi|268561564|ref|XP_002646475.1| Hypothetical protein CBG19448 [Caenorhabditis briggsae]
Length = 1606
Score = 301 bits (770), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 245/847 (28%), Positives = 392/847 (46%), Gaps = 131/847 (15%)
Query: 49 GLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPL 108
G V KV+ TP++V + PE + NRV+R + + +R++F D++ +++ + L
Sbjct: 462 GFQRVRKVIFTPTRVIYISPETIMGNRVLRKFDKDGTRVIRITFRDDNNNQMRANDTGDL 521
Query: 109 ISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA---------- 158
+ T + L GI I +++F L SNSQ++DN + A
Sbjct: 522 LEMTANK-----------FLGEGIRIANREFGFLGCSNSQMRDNGAYFMAKYSQSQLEKF 570
Query: 159 --SRP---ELTA-----ADIRESMGDFRDIKNVAKYAARLGQSFGSSR-EALHVDSSDIE 207
+RP +L A ++R+ +G F ++N+ K AR+GQ F SR + ++ SD
Sbjct: 571 LRTRPNEAQLKAFKPRIMEVRKHLGKFDKLENIPKLMARMGQCFTQSRLTGVELNRSDYI 630
Query: 208 IIPDVEVEDD--GITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAV 265
IPD E + G Y FSDG+G +S A+ VA PS+FQIR+ G KG++A+
Sbjct: 631 RIPDFEGGKNLAGKPYTFSDGVGIMSYRFAQKVAHAMQMGNSVPSSFQIRFRGMKGMIAI 690
Query: 266 DP-------------------TSSTKLSLRKSMLKYKSESTSLDILANSKYQ-PCF--LN 303
DP K + R S +K++++S D + KY P LN
Sbjct: 691 DPYMDLIHQWNVSYDIPYQVPNLELKCAFRPSQIKFEAKSLPGDQIEMVKYSAPVMVALN 750
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELL-- 361
+ I +L + + K+ G + L D A ++ N LKE
Sbjct: 751 KPFINILDQVSEMQSLECHKRVTGRVEE---LMDRQILSFARQMNDETYCRNRLKEFPRR 807
Query: 362 --------MCGYKPDVEPFLLMMLQ-TFRASNLLELRT-RTRIFIQNGRAMMGCLDETGT 411
M G+ EPF +++ + + S +LR + +I + GR+M+G +DETG
Sbjct: 808 IDIDFLRPMWGFTLSSEPFFRSLIKASIKFSITKQLRKEQIQIPKELGRSMLGVVDETGQ 867
Query: 412 LESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS 471
L+ GQ+FVQ + + ++ N + +V G V+V KNPC+ GD+RV AVD+P
Sbjct: 868 LQYGQIFVQYTQNAAKKLPMRGPNMTVPDAKIVTGTVLVTKNPCIVTGDVRVFEAVDIPE 927
Query: 472 LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLA 531
LHHM D VVFP G RPH +E +GSDLDGD Y + WD +L+ P D++ + +
Sbjct: 928 LHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLDRNEDPFDFSVEKKDPVP 987
Query: 532 RDM-TIEDV-EEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFS 589
D I+D+ +++ Y+ DS+G I N H+ ++D S C+ LAK ++ AVDF+
Sbjct: 988 FDFDQIDDLMRDFYVKYLKLDSVGTISNNHLHNSDQY--GLTSTVCMNLAKKNSQAVDFT 1045
Query: 590 KTG---------------VAATIPSGLRVEIYPDF-MEKQDKTCYESQRVIGKLYRAVKD 633
K+G IP E PD+ M + Y S R+ G+L+R +
Sbjct: 1046 KSGDPPAPLTREWGKDPETGENIPPE-GAERIPDYHMANERVPVYVSPRLCGRLFREFQA 1104
Query: 634 IAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEA 693
I + ++ +Q +T M + G+E Y+ A K Y+ +L +M+ YGI+TE
Sbjct: 1105 IDNVIKISEERDEQFEVQIDETLM-IQGYEAYMEGARKDLANYNGQLRAIMETYGIRTEG 1163
Query: 694 EILSGCIMEMAKSFDKKRDLEAIIFAVKSLKKEAR--AWFNK------------------ 733
EI+S CI++M + + + F + E R A F +
Sbjct: 1164 EIMSDCILDMRNRISDRDQDDKMSFYNTNQMIETRTTALFCRFRENFFKEFHGFQAACTE 1223
Query: 734 -KNESDSSHE----------DVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIH 782
+N +DS++ + KA AWY Y + R T LSF W +
Sbjct: 1224 IQNSNDSTNPLNFRCDGPSVPMLQKAVAWYRACYEFAQSSR-------ETRKLSFAWIVF 1276
Query: 783 DKLIEIK 789
D L ++K
Sbjct: 1277 DVLAKVK 1283
>gi|384495849|gb|EIE86340.1| hypothetical protein RO3G_11051 [Rhizopus delemar RA 99-880]
Length = 1099
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 188/525 (35%), Positives = 291/525 (55%), Gaps = 42/525 (8%)
Query: 4 IEHALETLFHLRECCYEPVRWLE----EQYRKYVLSRRF-LTSPAVALDD-----GLIY- 52
I + +++L Y+ ++ LE +Y + V+ R+ L P L D G I+
Sbjct: 592 ISYNFLNVYNLDRTFYQALKALECSAVREYLEMVVIRKTRLWDPLADLSDQQKRLGAIHK 651
Query: 53 -------VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVL 105
VNKV++TP+ V+ + + NRV+R + D ID FLR+ F+D+ +++ +
Sbjct: 652 VPSRCFLVNKVIITPTSVFIEPRSLEVGNRVLRHFQDHIDRFLRVQFLDDGFNRVCA--- 708
Query: 106 SPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTA 165
+ + + +Y R+ G+ IGD+ +E LA+S+SQ++++ W FAS +LTA
Sbjct: 709 ---VRKPGDRMNEALYVRIRKLFDQGLQIGDRYYEFLAYSSSQLREHGCWFFASGKDLTA 765
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSD 225
IR MGDF K V+KYAAR+GQ F SS + ++E IPD ++ +G Y FSD
Sbjct: 766 EMIRRWMGDFSREKVVSKYAARMGQCFSSSVAICSFHADEVETIPD--MKHNG--YIFSD 821
Query: 226 GIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT--SSTKLSLRKSMLKYK 283
G+GK+S LA+ + PSA Q+R GG KGV+AVDP + LR S +K+
Sbjct: 822 GVGKMSLALAKKTRNQMNLGV-DPSALQVRLGGSKGVLAVDPNLPKGVHVQLRPSQIKFD 880
Query: 284 SESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHE 343
++ L+++ + Y+ +LNRQ+I L+S LG+RD + + + ILTDPL+A
Sbjct: 881 TDHLELEVVKIATYRNGYLNRQIIILMSALGVRDAYVLELVNTMLQNTEKILTDPLEALY 940
Query: 344 ALELMSSGENT-NVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAM 402
AL S T N+L + G+ +P++ +L FR S L EL+ + ++ + +
Sbjct: 941 ALSPRSDDFGTSNMLVNAIQAGFLKSGDPYIQNILVLFRCSLLKELKKKAKVLVPKSACL 1000
Query: 403 MGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMR 462
+G +DETG LES +VFVQ DNS + V+ +V + +NP LHPGD+R
Sbjct: 1001 IGVVDETGLLESNEVFVQV--------WDNSATGNINQ--VITDRVSIFRNPSLHPGDLR 1050
Query: 463 VLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCW 507
VL+AVD+P LHH+ + VVF +KG+R + CSG DLDGD Y W
Sbjct: 1051 VLQAVDIPELHHLKNVVVFSSKGERDVPSMCSGGDLDGDEYTYEW 1095
>gi|46109400|ref|XP_381758.1| hypothetical protein FG01582.1 [Gibberella zeae PH-1]
Length = 1467
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 203/629 (32%), Positives = 319/629 (50%), Gaps = 66/629 (10%)
Query: 51 IYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLIS 110
I+V K LVTP+++ GPE NRV+R Y D D FLR+ F +E L P +
Sbjct: 438 IWVFKALVTPTRLLLDGPEAESKNRVLRKYADYNDYFLRVLFCEEGGQDLR---FHPKVD 494
Query: 111 STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA-----SRPELTA 165
NE IY + + +GI I +KF+ L FS+S ++ +S W A R +
Sbjct: 495 --NE----PIYSQFRRMMDHGIQIAGRKFDFLGFSHSSLRSHSAWFSAPFIDKDRQLQSP 548
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDI--EIIPDVEVEDDGITYCF 223
I +++GDFRDI+ AK AAR+GQ+F + A+ + ++I IPDV+ ED + F
Sbjct: 549 EAILQALGDFRDIRVPAKCAARIGQAFSETPYAVPIFENNIVPRYIPDVKSEDG--SRVF 606
Query: 224 SDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSL--RKSMLK 281
SDG+G IS E E + P+ QIR+GG KG++++D K+ ++SM+K
Sbjct: 607 SDGVGTISQEALEAIWPYLSMNSAAPTCLQIRWGGCKGMLSLDTRLEGKVFCIRQESMMK 666
Query: 282 YKSESTSLDILANSKYQPC--FLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPL 339
+KSE T + ++ +P LNRQ+I +L +G RD F + Q + L + D
Sbjct: 667 FKSEDTGELGICDTASKPLRLVLNRQMIKILEDMGTRDEWFFELQNNALDILRNVTADAT 726
Query: 340 KAHEALELMSSGENTNVLKELLMCGYKPDVE----PFLLMMLQTFRASNLLELRTRTRIF 395
LE + G N L L+ K D++ FL ++ L L+ + RI
Sbjct: 727 NTSSFLEHQAIGINMG-LPRLVKQLEKMDIDYRRDKFLKAAVEHVVLRELRLLKHKARIP 785
Query: 396 IQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPC 455
+ NG + G +DETG L+ G+V+V + R N+R + + +G+++V ++P
Sbjct: 786 VDNGVTLFGIMDETGFLKEGEVYVTYDKTYGRN------NSRGIKSTLTDGEIIVTRSPA 839
Query: 456 LHPGDMRVLRAVDVP---SLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI 512
LHPGD+++++ V P SL + +C+VF KGKR + SG DLDGD+Y + WD E +
Sbjct: 840 LHPGDIQLVKQVTPPQGHSLRSLQNCIVFSQKGKRDLPSMLSGGDLDGDIYNIIWDPEAM 899
Query: 513 PPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARS 572
P F P DY + L R + +D+ ++F +++ D LGVI HV+ AD +
Sbjct: 900 PSRVFRPADYPRVTPQPLDRQVEPKDIADFFINFMRTDILGVIATRHVILADYNDLGSID 959
Query: 573 NQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIY-PDFM--------------------- 610
C+ LA+L + AVDFSKTG+ + + R + PDF+
Sbjct: 960 RDCIALAELHSTAVDFSKTGIPVNVKALPRAPRFRPDFLATAPPLKLYDKGQLAHIGEDD 1019
Query: 611 --------EKQDKTCYESQRVIGKLYRAV 631
+ Y+S++++G+LYR V
Sbjct: 1020 EMDDADDMARTKTNYYQSEKILGQLYRNV 1048
>gi|290989465|ref|XP_002677358.1| predicted protein [Naegleria gruberi]
gi|284090965|gb|EFC44614.1| predicted protein [Naegleria gruberi]
Length = 913
Score = 299 bits (766), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 206/626 (32%), Positives = 313/626 (50%), Gaps = 61/626 (9%)
Query: 44 VALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYST 103
V +DD + + KV++TP+ + + + NRV+R Y D FLR++F DE L+++
Sbjct: 300 VKVDDNMFEIRKVMITPTGIKYFPKILESGNRVLRKYKQYEDRFLRVTFCDEGLNRV--- 356
Query: 104 VLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRP-- 161
+ E+ T ++ R+ L NG IG++ +E LA+SNSQ++ +S W +
Sbjct: 357 ---------SAEKVTNMHPRLEEFLNNGFTIGNRHYEMLAYSNSQLRSHSCWFLNTEGIR 407
Query: 162 ELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDG--I 219
EL+ + I E +GDF DIK +AKYAAR+GQ F ++ + + ++ I E+E +G
Sbjct: 408 ELSVSSIIEGLGDFSDIKVMAKYAARIGQCFSNTFNGIKSEFIEVNDIVYREIERNGDIK 467
Query: 220 TYCFSDGIGKISAELAEIVAKNCGFTI----YTPSAFQIRYGGYKGVVAVDPTSS----T 271
+DG G++S AE V+K I Y PSA Q R GGYKGVV D +
Sbjct: 468 ENVLNDGCGRMSVSFAEQVSKQMKIRIHGKAYIPSALQFRLGGYKGVVVQDKDVADIFGK 527
Query: 272 KLSLRKSMLKYKSE-STSLDILANSKYQPCF--LNRQLITLLSTLGIRDHVFEKKQREGV 328
L L KS K+K E S +++A SK +P F LNRQ+I LLS+ G+ D K +
Sbjct: 528 DLVLTKSQNKFKDEKSDEFEMVAFSK-RPKFSSLNRQIIILLSSNGLPDSALMKFVDREI 586
Query: 329 AQLDAILTDPLKAHEAL------------ELMSSGENTNVLKELLMCGYKP--------- 367
+ T L + L + + S E ++ ++L K
Sbjct: 587 ETWRSRTTKKLSIRKLLRKVWENVVGSNIKKVISSEYLDLKAQVLASQVKGMSQQHVEYF 646
Query: 368 -DVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA--S 424
+V+P L + + L +T + + +MG +D G LE +VFVQ S+ S
Sbjct: 647 YNVDPLLCTLCDKILINQFSSL--KTNLPVDKCSLLMGVVDFYGVLEDDEVFVQLSSFES 704
Query: 425 RRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVD---VPSLHHMVDCVVF 481
R+ D E G+V G V V +NPCLHPGD+R +AV + L H+ D +VF
Sbjct: 705 YERDLYDPGS---YAEGGIVSGNVFVTRNPCLHPGDVRKFKAVSDDRINVLKHLKDVIVF 761
Query: 482 PAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEE 541
K K+ ++ SG DLDGD++ VCWD EL+ + PM +T + + +
Sbjct: 762 SQKSKQSQASKMSGGDLDGDLFMVCWDPELLNFTEHKPMKHTQLKPLEKNDGFDYKAIRD 821
Query: 542 YFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGL 601
+ +Y+VND+LGV+ H+ H D A CL+LA + VD++KTGV +P L
Sbjct: 822 FLKEYVVNDNLGVVAFMHMEHYDQSSKGALDQNCLDLADYHSHQVDYAKTGVRKALPMEL 881
Query: 602 RVEIYPDFMEKQ-DKTCYESQRVIGK 626
E P +M K K Y S ++IGK
Sbjct: 882 VSEYRPHYMPKSFMKKTYHSTKIIGK 907
>gi|115458854|ref|NP_001053027.1| Os04g0465700 [Oryza sativa Japonica Group]
gi|113564598|dbj|BAF14941.1| Os04g0465700, partial [Oryza sativa Japonica Group]
Length = 377
Score = 299 bits (766), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 163/365 (44%), Positives = 217/365 (59%), Gaps = 19/365 (5%)
Query: 436 NRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSG 495
N G+ V GKV + KNPCLHPGD+RVL A+ P L MVDC+VFP +G+RPH NECSG
Sbjct: 4 NDDGKTATVVGKVAITKNPCLHPGDIRVLEAIYDPDLVGMVDCLVFPQRGERPHPNECSG 63
Query: 496 SDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVI 555
DLDGD+YF+ WD +LIP PMDYT +++ +T+E+++++F DY++NDSLG I
Sbjct: 64 GDLDGDLYFITWDDKLIPEKVDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAI 123
Query: 556 CNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDK 615
AH++HAD P KARS +CL+LA L ++AVDF+KTG A +P LR YPDFME+ +K
Sbjct: 124 STAHLIHADRSPLKARSPECLQLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEK 183
Query: 616 TCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQS--YDTDMEVDGFEDYITDAFKYK 673
Y S V+GKLYR+ + + + A S YD D+EV G ++++ A +Y
Sbjct: 184 PMYISNGVLGKLYRSAMGHMEKSGDSGALSSSSAQPSPTYDPDLEVPGSDEFLQAAEEYY 243
Query: 674 TEYDNRLGNLMDYYGIKTEAEILSGCIME--MAKSFDKKRDLEA---IIFAVKSLKKEAR 728
Y+ +L LM+YY + E EIL+G I + D KR E I+ AV +L +EAR
Sbjct: 244 ELYEEKLTTLMNYYRAELEDEILTGNIRNKMLYLKRDNKRYFEMKDRIVAAVDALHREAR 303
Query: 729 AWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEI 788
W S ED ASAWY V YHP + G F SFPW D L+ I
Sbjct: 304 GWL----LSSRKEEDASRMASAWYRVTYHPD-----RRRG---KRFWSFPWIACDNLLAI 351
Query: 789 KRGKQ 793
K Q
Sbjct: 352 KASSQ 356
>gi|156045453|ref|XP_001589282.1| hypothetical protein SS1G_09915 [Sclerotinia sclerotiorum 1980]
gi|154694310|gb|EDN94048.1| hypothetical protein SS1G_09915 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1184
Score = 298 bits (764), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 223/697 (31%), Positives = 348/697 (49%), Gaps = 76/697 (10%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKL-YSTVLSPLISS 111
V++V +TP+ Y GPE +NR++R Y NF+R++F DED ++ Y++ ++
Sbjct: 420 VHRVTITPAGFYLEGPEAESNNRILRKYAGSHGNFVRVNFCDEDGGRIQYASNVA----- 474
Query: 112 TNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM----FASRPELTAAD 167
N+E +++ +L +NG I +K+E L S+S ++ S W F A
Sbjct: 475 -NDEIFDGVFKNIL---KNGFSIASQKYEYLGSSHSSLRTQSCWFVAPFFNKEGYHDAQH 530
Query: 168 IRESMGDFRDIKNVAKYAARLGQSFGSSREALHVD--SSDIEIIPDVEVEDDGITYCFSD 225
I +G+F I++ AK AAR+GQ+F + A+ +D + IE IPDVE FSD
Sbjct: 531 IIHDLGNFTAIRSPAKCAARIGQAFSDTPNAITLDKRTVTIERIPDVERNGR----VFSD 586
Query: 226 GIGKISAELA-EIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP-TSSTKLSLRKSMLKYK 283
G+G +S L +I K P+ FQIRY G KG++++D L LR+SM+K+
Sbjct: 587 GVGTMSESLMHKIWEKLPNKKFVKPTCFQIRYQGAKGMISLDTRLPGDHLRLRESMIKFD 646
Query: 284 -SESTSLDILANSKYQPC--FLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLK 340
S S L+I + Y+P +LNRQ I +L LG+ F K Q + V +L AI +
Sbjct: 647 GSISNDLEICGGA-YKPLSMYLNRQFIKILEDLGVEPEYFMKLQEKEVTRLRAITANTYN 705
Query: 341 AHEALELMSSGENTNVLKELLMCGY-----KPDVEPFLLMMLQTFRASNLLELRTRTRIF 395
A LE G+ + + C Y + DV FL +L+ L L+ + RI
Sbjct: 706 ASTFLERKRVGDVVLLPYLIEHCSYLNLDFRNDV--FLRDVLEMAVLIELRTLKHKARIP 763
Query: 396 IQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPC 455
++ G + G +DETG L+ G+++ +R L V+ VV+ + P
Sbjct: 764 VEKGYHLHGIMDETGILKEGEIYCCWLEDGKRTTL-------------VQSSVVITRAPA 810
Query: 456 LHPGDMRVLRAVDVPS---LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI 512
LHPGD+++ AVDVPS L + +C+ F KG R ++ SG DLDGD+Y+V +D E+
Sbjct: 811 LHPGDVQLANAVDVPSNSPLKRLYNCICFSQKGARDLPSQLSGGDLDGDLYYVMFDPEMK 870
Query: 513 PPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARS 572
P DY P + R +T +D+ + F ++ D LGVI N H V+AD +
Sbjct: 871 LKKTVIPADYPRLPPLDIGRSVTQQDMADNFLTFMKTDQLGVISNRHQVYADQNVMGTQC 930
Query: 573 NQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVK 632
QCL LA+L + AVDFSKTG+A P +E + E + YESQ+ G LYRA+
Sbjct: 931 QQCLILAELCSTAVDFSKTGIAEYAP----IEAMDEEDEVSNIKYYESQKTCGMLYRAID 986
Query: 633 DIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYI-------------TDAFKYKTEYDNR 679
+ + + + MQ+ DT + +++ DA + K Y+N
Sbjct: 987 E-----RQVFEDIQRLDMQANDTPDVMQHVWEFVKSRSQGILWQHLRNDAMEIKDIYENN 1041
Query: 680 LGNLMDYYGIK-----TEAEILSGCIMEMAKSFDKKR 711
+ ++M +Y +E E+ G I+ A S KK+
Sbjct: 1042 MLDIMHHYSEHPSRPVSEREVFVGNILGKAGSVSKKQ 1078
>gi|341885452|gb|EGT41387.1| hypothetical protein CAEBREN_32717 [Caenorhabditis brenneri]
Length = 1562
Score = 298 bits (762), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 235/807 (29%), Positives = 376/807 (46%), Gaps = 129/807 (15%)
Query: 43 AVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYS 102
A L + V KV+VTPS++ PE+ + NR+VR + D LR F D++L +
Sbjct: 669 AKPLPKNCVQVAKVIVTPSRILLMAPEVMMVNRIVRRFGP--DYALRCVFRDDNLGR--- 723
Query: 103 TVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPE 162
+SNSQ++D +++A R +
Sbjct: 724 -----------------------------------------WSNSQMRDQGCYLYAPRVD 742
Query: 163 L-------TAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVE 215
T +IR+ MGDFR+ +V K +R+GQ F ++ + ++ + PDVE
Sbjct: 743 PGTGRVSGTVEEIRKWMGDFREAVSVPKMMSRMGQCFTQAQPTVRLERRHWIVEPDVEGG 802
Query: 216 DDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-----SS 270
G YCFSDG G+IS +LA + K TP+ FQ+R+ G+KG++ +DPT
Sbjct: 803 LSG-KYCFSDGCGRISVKLANHITKILELK-ETPACFQVRFKGFKGILVIDPTIDDIIGM 860
Query: 271 TKLSLRKSMLKY-----KSESTSLDILANSKYQPCFLNRQLITLLSTLG----------I 315
K+ RKS K+ + L+++ + P LNR IT+L + I
Sbjct: 861 PKVVFRKSQQKFGEGGGDQQDEYLEVVKYAMPSPVCLNRPFITILDQVSAKQSASSHRRI 920
Query: 316 RDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLM 375
+ + +RE + + +L + A E + + + N K G++ +P +
Sbjct: 921 TNRIHYYLERELCSLSNMLLNENQAAEELVNRTNLPIDWN--KASKHAGFRLSKDPLIRS 978
Query: 376 MLQTFRASNLLELRTRTRIFIQN--GRAMMGCLDETGTLESGQVFVQCSASRRREFLDNS 433
ML + N++ ++ +IF+ GR+M G +DETG L+ GQVF+Q S S R+
Sbjct: 979 MLFSIYRYNIIHHISKAKIFLPPDLGRSMYGVVDETGLLQYGQVFIQYSQSIRQT----- 1033
Query: 434 CNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNEC 493
S + GKV++ KNPC PGD+RV AV P+L H+VD VVFP G RPH +E
Sbjct: 1034 ----SATPILKTGKVLITKNPCHVPGDVRVFEAVWQPALAHLVDVVVFPRHGPRPHPDEM 1089
Query: 494 SGSDLDGDVYFVCWDHELIPPLQFPPMDY--TPAPEKVLARDMTIEDVEEYFADYIVNDS 551
+GSDLDGD Y + WD E++ M Y + APE+ ++ T +D+ E+F Y+ DS
Sbjct: 1090 AGSDLDGDEYSIIWDQEMLLDYNEEAMIYPSSTAPEE--DKEPTTDDMVEFFLRYLQQDS 1147
Query: 552 LGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAA-TIPSGLRVEIYPDFM 610
+G + NAH+ +ADL C +A +AVDF K+GV A + S + E+ PD+M
Sbjct: 1148 IGRMSNAHLTYADLH--GLFHENCRNIALKCAVAVDFPKSGVPAEPLASFEQCEMTPDYM 1205
Query: 611 EKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVD------GFED 664
K Y S R+ G+L+R + + ++ + YD + D G E
Sbjct: 1206 ATGGKPMYYSPRLNGQLHRKARKVEEVLEEYET-RGSIFEGEYDKIICPDDADVFFGSEA 1264
Query: 665 YITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRD------LEAII- 717
+ A + EY +R+ L+D YGI+ EA ++SG + + +RD + I+
Sbjct: 1265 KLVQAMMIRDEYIDRMQQLLDEYGIEDEASVVSGHAASIKRLAGMERDDYSFYHTDKIVE 1324
Query: 718 FAVKSLKKEARAWFNKKNESDSSH-------------EDVYAKASAWYHVAY-HPSYWGR 763
+ L RA F ++ +++H + + K WY V+Y P
Sbjct: 1325 LRYEKLYHVFRAKFFEEFGGEAAHLVNDGSKMRLNCTKAMREKVRQWYFVSYVQP----- 1379
Query: 764 YKEEGMNRTHFLSFPWCIHDKLIEIKR 790
K + S PW + D L +++R
Sbjct: 1380 -KRNKTGKFIGQSLPWVVWDALCDLRR 1405
>gi|33331167|gb|AAQ10792.1| RNA-directed RNA polymerase-like protein [Branchiostoma floridae]
Length = 1005
Score = 297 bits (761), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 166/408 (40%), Positives = 241/408 (59%), Gaps = 29/408 (7%)
Query: 396 IQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPC 455
+ +GR MMG +DETG L+ GQVF+Q S RE + + V +G+V V KNP
Sbjct: 600 VTSGRIMMGTMDETGKLQYGQVFIQYS----RE-----VDKPQADKVVHQGQVTVTKNPY 650
Query: 456 LHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPL 515
HPGDMR AVDVP L HMVDC+VFP++G RPH +E SGSDLDGD+YFV W LI P
Sbjct: 651 FHPGDMRKFTAVDVPELRHMVDCIVFPSRGPRPHPDEMSGSDLDGDMYFVTWREGLILPR 710
Query: 516 Q-FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQ 574
+ P MD+T P++VL R + D+ E+FA+YI ++ LG+I NAH+VHAD E S +
Sbjct: 711 ENRPAMDFTAQPKRVLHRPVQESDMIEFFAEYIGSNQLGLIANAHLVHADKEDQGIFSQK 770
Query: 575 CLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDI 634
C++LA+L + AVD KTG + LR E+YPDFM K DK Y S+R+IG+L+R +++
Sbjct: 771 CIDLAQLHSDAVDAPKTGQCPELKGDLRPEVYPDFMMKSDKPQYRSERIIGRLFRKCQEL 830
Query: 635 APPTATIKSFTKEVAMQS--YDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTE 692
+A +S T ++ + D D+ +GF+ YI DA Y+N + ++M YGI +E
Sbjct: 831 D--SANQRSGTDDIVYHTSRIDHDLVREGFDSYIEDAQTQLNIYNNMMMSIMSLYGITSE 888
Query: 693 AEILSGCIMEMAKSFDKKRD-----LEAIIFAVKSLKKEARAWFNKKNE-----SDSSHE 742
E++SGCI+++ + ++ E + K+L ++ RA F K+ + + E
Sbjct: 889 GEVVSGCILKVKQRLGLLKNERFEVAEYVRARFKTLWRKTRAEFFKQFDVEELSEERRKE 948
Query: 743 DVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIKR 790
+ KASAWY V Y + + LSFPW ++D L +K+
Sbjct: 949 EQLKKASAWYMVTYSDA-----NKPLDPSPKLLSFPWVVYDVLASLKK 991
Score = 179 bits (453), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 108/255 (42%), Positives = 152/255 (59%), Gaps = 20/255 (7%)
Query: 46 LDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVL 105
L D +Y KV+VTP+++ F PE + NRVVR Y +DNF+R++F DED KL
Sbjct: 363 LPDHYVYARKVVVTPTQMLFLKPEPIVENRVVREY--GVDNFIRVAFRDEDFSKL----- 415
Query: 106 SPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFAS--RPEL 163
+ TN + RV L GI IG++ F+ L SNSQ++++ WM+A+ +
Sbjct: 416 ----AVTNPNSIRCVTSRVKDVLERGIRIGERHFKYLGSSNSQMREHGCWMYAAVDKTTT 471
Query: 164 TAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSD--IEIIPDVEVEDDGITY 221
+ +DIR MGD + VA Y +RLGQ F SSR A+ V D +E+I DVE T+
Sbjct: 472 STSDIRGWMGDLSHERCVATYVSRLGQFFSSSRNAVSVSVEDRSVELIADVETSSG--TH 529
Query: 222 CFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT--SSTKLSLRKSM 279
FSDGIGKIS LA+ VA G + PSAFQIRY G KGV+A DPT ++ ++ +R SM
Sbjct: 530 TFSDGIGKISVPLAKKVAAALGVSP-VPSAFQIRYAGCKGVLAQDPTLGNTDRIQIRGSM 588
Query: 280 LKYKSESTSLDILAN 294
K++SE +L++ +
Sbjct: 589 KKFESEHKTLEVTSG 603
>gi|241620373|ref|XP_002408656.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
gi|215503015|gb|EEC12509.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
Length = 529
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 201/544 (36%), Positives = 289/544 (53%), Gaps = 35/544 (6%)
Query: 168 IRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVED--DGITYCFSD 225
+R ++GD I+ +KY ARLGQ+F S + V + + D+ ++ GI Y FSD
Sbjct: 1 VRAAIGDLSSIRVPSKYMARLGQAFSQSMGYVTVPQACTRVDRDILLKGRKPGIKYNFSD 60
Query: 226 GIGKISAE-LAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYK 283
G+G+IS LA + A PSA QIRYGG KG++ +DPT ++ R SM KY
Sbjct: 61 GVGRISPSVLARVHAALPAEG--KPSAIQIRYGGCKGMLVLDPTLEGDQIVFRDSMFKYP 118
Query: 284 SESTSLDILANSKYQPCFLNRQLITLLS-------TLGIRDHVFEKKQREGVAQ-LDAIL 335
S+S L IL S+ + LNR +IT+LS I D VF + Q++ + LD++
Sbjct: 119 SQSEELFILKTSRPRVVKLNRPMITILSQKMTRSGVQDIEDGVFMRMQQDCLEPYLDSLF 178
Query: 336 TDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIF 395
D K AL L S +EL G EPF +L L +L+ + I
Sbjct: 179 ND--KGTAAL-LQSESSLRMPYRELAEAGLDLHAEPFFRSLLWALHHRCLKDLKDKMNIL 235
Query: 396 I--QNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNR-SGELGVVEGKVVVAK 452
+ + GR M G LDET TL+ GQV+V+ S R D+ R + G+V+V K
Sbjct: 236 VPPRFGRTMFGVLDETATLQYGQVYVRYSTDLDRFGPDDESQYRLCTTFRLRAGRVMVTK 295
Query: 453 NPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI 512
NPC+HPGD+R+L AVDVP+L H+ DCVVFP GKRPH +E +GSDLDGD Y V W L+
Sbjct: 296 NPCIHPGDIRLLEAVDVPALSHIRDCVVFPQIGKRPHPDEMAGSDLDGDEYSVIWYEPLL 355
Query: 513 PPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARS 572
PMD+ + + +ED+ ++ YIVND +G++ +AH+ ADL +S
Sbjct: 356 FKRNDDPMDFYSSEALEKEGTVQVEDMVDFMCTYIVNDIVGLMGSAHLAWADLLKQGVKS 415
Query: 573 NQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQ-DKTCYESQRVIGKLYRAV 631
+CL LAK + VDF+KTG + + + YPDFMEK +K Y S+R +G LYR +
Sbjct: 416 QRCLVLAKKCSECVDFAKTGSSTRLAQSEKPPRYPDFMEKHAEKYTYPSKRALGLLYRNL 475
Query: 632 K----DIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYY 687
K D A P ++ D + V G E+++ A + EY L +++ Y
Sbjct: 476 KGMVADSAGPVGDVRP----------DRRLLVPGREEFVEGAREALREYKLALCSILTSY 525
Query: 688 GIKT 691
G+ +
Sbjct: 526 GVGS 529
>gi|105990552|gb|ABF81698.1| RNA-dependent RNA polymerase [Zea mays]
Length = 459
Score = 296 bits (758), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 155/340 (45%), Positives = 220/340 (64%), Gaps = 5/340 (1%)
Query: 1 MEYIEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTP 60
++ + E + L+ CYEP++++ + + ++ L++ + L+ ++ +TP
Sbjct: 118 IDTLRRIFEKMSKLKSTCYEPLQFIRHEAHSMNMRKKALSNKRES--GKLMRCYRIHITP 175
Query: 61 SKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST--NEERHT 118
SK+Y GPE +SN VV+ + + +F R++FVDED KL LS ++ T
Sbjct: 176 SKIYCLGPEEEVSNYVVKYHSEYASDFARVTFVDEDWSKLSPNALSARTEQGFFSKPLKT 235
Query: 119 TIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDI 178
+Y R+LS L+ G IG KK+E LAFS SQ++ NS+WMFAS LTA +IR MG F DI
Sbjct: 236 GLYHRILSILKEGFCIGPKKYEFLAFSASQLRGNSVWMFASNSSLTAENIRRWMGHFEDI 295
Query: 179 KNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIV 238
++V+K AAR+GQ F SSR+ V S D+E+IPD+EV DG Y FSDGIGKIS A V
Sbjct: 296 RSVSKCAARMGQLFSSSRQTFEVSSYDVEVIPDIEVTTDGTKYIFSDGIGKISTRFARQV 355
Query: 239 AKNCGF-TIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKY 297
AK G + PSAFQIRYGGYKGV+ +DPTS LSLR SM K++S+ST L+I SK
Sbjct: 356 AKLIGLDPAHPPSAFQIRYGGYKGVITIDPTSFFNLSLRPSMKKFESKSTMLNITNWSKS 415
Query: 298 QPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTD 337
QPC++NR++I+LLSTLGI+D FE Q++ + + D +LT+
Sbjct: 416 QPCYVNREIISLLSTLGIKDEAFESMQQDDMHESDGMLTN 455
>gi|451855231|gb|EMD68523.1| hypothetical protein COCSADRAFT_178332 [Cochliobolus sativus ND90Pr]
Length = 1244
Score = 296 bits (757), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 198/575 (34%), Positives = 298/575 (51%), Gaps = 39/575 (6%)
Query: 55 KVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNE 114
K VTP+ + GP+ +SNRV+R Y + F+R+ F DED +V +S N+
Sbjct: 450 KATVTPTGILLRGPDWDVSNRVLRRYTTRTEYFMRVFFADED----GLSVFHDSRASQNQ 505
Query: 115 ERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA----SRPELTAADIRE 170
+YER + L+NGI + + F+ L FS++ ++++ W A + A ++ +
Sbjct: 506 -----VYERFRNVLQNGISVAGRTFQFLGFSHASLRNHQAWFMAPFEMDGSLVRARNVIQ 560
Query: 171 SMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKI 230
+GDF I AK AAR+GQ+F + ++ V + +VE +G T FSDG G I
Sbjct: 561 DLGDFSHIHCSAKCAARIGQAFSDTIFSVPVPETAYVTEVKDDVERNGRT--FSDGCGTI 618
Query: 231 SAELAEIVAKNCG--FTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYKSEST 287
S EL V + P+ QIRY G KGV+++D + S +L +RKSM KY ++ T
Sbjct: 619 SLELLRTVWRALPPERRQQRPTVLQIRYRGAKGVLSLDASLSGQQLHVRKSMTKYIAKET 678
Query: 288 SLDI-LANSKYQP--CFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEA 344
D+ L + Y+P FLN Q I +L LG+ F Q E V L I PL A
Sbjct: 679 WRDLELCGAAYKPLSVFLNHQFIKILEDLGVPAEKFLDVQDEAVKILKLITEHPLNAASF 738
Query: 345 LELMSS---GENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRA 401
L S + + + + G + FL +++ S+L L+ R RI I+ G
Sbjct: 739 LAYSHSCVFAKVPQLFEMMHRIGLSFHADRFLTDIVEVAAMSSLRSLKYRARIPIEKGYL 798
Query: 402 MMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDM 461
+ G +DET TL+ G+V++ + L S +V ++VV + P LHPGD+
Sbjct: 799 LYGVMDETNTLKYGEVYIATEDHDKTGKLKRSI--------LVGNQIVVTRAPALHPGDV 850
Query: 462 RVLRAVDVPS---LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFP 518
+++ AVDVP L + +CVVF +G R ++ SG DLDGD++ + +D LIP
Sbjct: 851 QLVNAVDVPDDSPLRALHNCVVFSQQGPRDLPSQLSGGDLDGDLFHIIYDQRLIPAYTVE 910
Query: 519 PMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLEL 578
P +Y P L R + D+ ++F +Y+ D LG I N H + AD++P+ R CL L
Sbjct: 911 PAEYDKVPANDLGRPVEANDIVDFFIEYMKMDRLGQISNKHKIRADVKPNGTRHPDCLIL 970
Query: 579 AKLSTIAVDFSKTGVAA---TIPSGLRVEIYPDFM 610
AKL++ AVDFSKTGV A IP G+ PDFM
Sbjct: 971 AKLASDAVDFSKTGVPADMSLIPKGID-HFRPDFM 1004
>gi|170584472|ref|XP_001897023.1| RNA dependent RNA polymerase family protein [Brugia malayi]
gi|158595558|gb|EDP34101.1| RNA dependent RNA polymerase family protein [Brugia malayi]
Length = 1542
Score = 295 bits (754), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 240/807 (29%), Positives = 389/807 (48%), Gaps = 104/807 (12%)
Query: 46 LDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVL 105
L + + KV+ TP ++ PE+ ++NRV+R + +E LR F D++ +L
Sbjct: 466 LPQNCVLIRKVIATPLRLLLLPPEVMMTNRVIRHFGEEYA--LRCVFRDDNGQRLVPKEF 523
Query: 106 SPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA------- 158
+ + +++ I + V L G+ I + ++ LA+SNSQ++D +M++
Sbjct: 524 TR--GRSLQDQSLIIPDLVYRILGTGLRIASRHYQFLAWSNSQMRDGGCYMYSDAIVNDE 581
Query: 159 --SRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEV-- 214
DIR MGDF K V K +R+GQ F ++ + + D ++ D+
Sbjct: 582 VHGEVVCNVEDIRRWMGDFTASKTVPKLMSRMGQCFTQAQPTIKLKKDDWKVEDDIMGGI 641
Query: 215 --EDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT---- 268
+ G + FSDG+G+IS + A+ +AK G TPS +Q+R+ G+KGV+ +DP
Sbjct: 642 VHPETGEVFNFSDGVGRISKKYADRIAKTLGLYP-TPSCYQVRFKGFKGVLCIDPLLDEL 700
Query: 269 SSTKLSLRKSMLKYKSESTS---LDILANSKYQPCFLNRQLITLLSTLGIRD-HVFEKKQ 324
+ RKS K++ + S ++++ S P LNR LI +L + + KK
Sbjct: 701 DQVNIVFRKSQKKFEEDDESAAEVEVVKYSMPSPVRLNRPLIMILDQVSDKQGRHLHKKV 760
Query: 325 REGVAQLDAILTDPLKAHEALELMSSGENTNVLK------ELLMCGYKPDVEPFLLMMLQ 378
+ L + D L A E +++ E ++ L +L G EPF +L
Sbjct: 761 CNRIHSLLELELDKLAAMMFDENVATEELSSRLSLPIDFHQLHSNGITFTNEPFFRSLLT 820
Query: 379 TFRASNLLELRTRTRIFI--QNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNN 436
N+ ++++IF+ GR M G +D+TG L+ GQVFVQ S+S +
Sbjct: 821 AIHRYNIKLHLSKSKIFLPCSMGRTMYGVIDDTGLLQYGQVFVQYSSSMQYV-------- 872
Query: 437 RSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGS 496
S + V G V+V KNPC GD+R+ AV +L H+ D +VFP G RPH++E +GS
Sbjct: 873 -SAKKIVYTGSVMVTKNPCHVAGDVRMFEAVYQDALLHLCDVIVFPRYGPRPHSDEMAGS 931
Query: 497 DLDGDVYFVCWDHELI-----PPLQFP---PMDY-TPAPEKVLARDMTIEDVEEYFADYI 547
DLDGD Y V +D EL + FP P +Y TPA T D+ ++F Y+
Sbjct: 932 DLDGDEYTVIFDKELFFENNERAMFFPNSLPTEYGTPA---------TTGDMIDFFLKYL 982
Query: 548 VNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAAT-IPSGLRVEIY 606
DS+G + NAH++ C ++A+ +AVDF KTGVAA + S + E+
Sbjct: 983 SQDSIGRMSNAHLI----------IEVCDDIARKCAVAVDFPKTGVAAKPLLSHEQCEVM 1032
Query: 607 PDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKS--FTKEVAMQSYDTDMEVDGFED 664
PD+M+ K Y S+R++G+LYR + + + ++ F Q D + + E
Sbjct: 1033 PDYMQNMIKPSYRSKRLLGELYRKARRVEDISEIVQGTKFADYCDPQLCDESLFHEQSE- 1091
Query: 665 YITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAVKSLK 724
I ++ + + EY +R+ LMD YGI EA ++SG M + + + ++D + + K ++
Sbjct: 1092 LIQESLRLRDEYHSRIQQLMDEYGISDEASVISGHSMTIKRIIEMEKDDYSFYNSDKIVE 1151
Query: 725 KEA-------RAWFNKK--NESDSSHEDVYA------------KASAWYHVAYHPSYWGR 763
R F K+ ESD D + KA AWY V Y ++
Sbjct: 1152 LRYSRIFSYFRHEFFKEFGGESDFQTVDAFGKREMRWNVALIRKAKAWYTVTYTSAF--- 1208
Query: 764 YKEEGMNRTHFLSFPWCIHDKLIEIKR 790
+ + F SFPW + D L+ IKR
Sbjct: 1209 -----RSSSEFRSFPWIVWDILLIIKR 1230
>gi|308474534|ref|XP_003099488.1| hypothetical protein CRE_01169 [Caenorhabditis remanei]
gi|308266677|gb|EFP10630.1| hypothetical protein CRE_01169 [Caenorhabditis remanei]
Length = 1637
Score = 294 bits (753), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 255/876 (29%), Positives = 399/876 (45%), Gaps = 167/876 (19%)
Query: 39 LTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLD 98
LTS V +G V K++ TP++V + PE + NRV+R Y + LR+ F D+D
Sbjct: 479 LTSEEVR--EGYQRVRKIIFTPTRVVYVAPETLMGNRVLRRYDRDGCRVLRIMFRDDDNQ 536
Query: 99 KLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA 158
K+ + S L+ +T V LR+GI + K F L SNSQ++D+ +
Sbjct: 537 KMRTNKTSTLLETT-----------VHRYLRDGITVAGKNFGYLGSSNSQMRDSGAYFME 585
Query: 159 S---------------------RPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSR- 196
P++ +A R+++G F I N+ K ARLGQ F SR
Sbjct: 586 KYSSAQCREYEEKYKLKPPIDFNPKIQSA--RKNLGRFETIDNIPKMMARLGQCFTQSRL 643
Query: 197 ------EALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPS 250
++ + D+ +V+ ++ Y FSDG+G +S A++V++ PS
Sbjct: 644 SGVNLERCTYITTFDLTGGKNVKRDE----YTFSDGVGLMSHLFAKMVSEVMDLGKGVPS 699
Query: 251 AFQIRYGGYKGVVAVDP-------------------TSSTKLS--LRKSMLKYKSESTSL 289
FQ R+ G KGV+AV+P +S LS R S +K+ S+
Sbjct: 700 CFQFRFRGMKGVIAVEPLLDNIRLWCVENNVPEVSEETSWGLSCVFRPSQIKFISKRHPR 759
Query: 290 DILANSKYQ---PCFLNRQLITLLSTLGIRDHVFEKK----QREGVAQLDAILTDPLKAH 342
D + KY P LN+ I +L D V E + R +++ +L D
Sbjct: 760 DQVEIVKYSAPVPVSLNKPFINIL------DQVSEMQSLECHRRVTNRIEELL-DRQMLQ 812
Query: 343 EALELMSSGENTNVLKEL----------LMCGYKPDVEPFLLMMLQT---FRASNLLELR 389
A +++ N LKEL G+ EPF +++ F + L +
Sbjct: 813 FAQQMVDETFCRNRLKELPRRVDIDYLRTTWGFTLSSEPFFRSLIKASIKFLITRQLR-K 871
Query: 390 TRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVV 449
+ I GR+M+G +DETG L+ GQ+FVQ + + L ++ V+ G V+
Sbjct: 872 EQIPIPADLGRSMLGVVDETGRLQYGQIFVQLTKN-----LALKIPPKTAARQVLTGTVL 926
Query: 450 VAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDH 509
+ KNPC+ GD+R+ AVD+P LHHM D VVFP G RPH +E +GSDLDGD Y + WD
Sbjct: 927 LTKNPCIVAGDVRIYEAVDIPELHHMNDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQ 986
Query: 510 ELIPPLQFPPMDYTPAPEKVLARDMTIEDV-EEYFADYIVNDSLGVICNAHVVHADLEPD 568
+L+ P D+T +K ++ I+ + +++ Y+ DS+G I N+H+ ++D
Sbjct: 987 QLLLDKNEDPFDFTSEKQKSSFKEEEIDGLMRDFYVTYLKLDSVGTISNSHLHNSDQYGL 1046
Query: 569 KARSNQCLELAKLSTIAVDFSKTGV---------------AATIPSGLRVEIYPDFMEKQ 613
+R C++LAK + AVDF+K+G+ IP R E PD+
Sbjct: 1047 NSRV--CMDLAKKNCQAVDFTKSGIPPEELEKKWRKDDETGEMIPPE-RAERVPDYHMGN 1103
Query: 614 DKT-CYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKY 672
D + Y S R+ GKL+R K I + +++ + S D M +DG+++Y+ A +
Sbjct: 1104 DHSPMYVSPRLCGKLFREFKAIDDVVKISEERDEQIEI-SIDPTMTIDGYDEYMQSARED 1162
Query: 673 KTEYDNRLGNLMDYYGIK--------TEAEILSGCIMEMAKSF-DKKRD-------LEAI 716
Y+ +L ++M+ YGIK TE EI SGCI++M DK +D + I
Sbjct: 1163 LARYNAQLRSVMENYGIKKINDRYFQTEGEIFSGCIVDMRNRISDKDQDDMSFYNTNQLI 1222
Query: 717 IFAVKSLKKEARAWF---------------NKKNESDSSHEDVYA-------KASAWYHV 754
V +L K+ R F NE++ A KA AWY
Sbjct: 1223 ETKVSNLFKKYREHFFDEFDGGWQTNTECTRNGNETNILQRQCRAPTNKMMRKAVAWYKA 1282
Query: 755 AYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIKR 790
Y + R ++ LSF W +D L +K+
Sbjct: 1283 CYEEARVTRENKK-------LSFAWLAYDVLASVKQ 1311
>gi|115437172|ref|NP_001043229.1| Os01g0527600 [Oryza sativa Japonica Group]
gi|113532760|dbj|BAF05143.1| Os01g0527600, partial [Oryza sativa Japonica Group]
Length = 385
Score = 294 bits (752), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 160/369 (43%), Positives = 231/369 (62%), Gaps = 24/369 (6%)
Query: 446 GKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFV 505
G VV+AKNPCLHPGD+R+L AVDVP LHH+VDC+VFP KG+RPH NE SGSDLDGD+YFV
Sbjct: 3 GTVVIAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPQKGERPHANEASGSDLDGDLYFV 62
Query: 506 CWDHELIPPLQ--FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHA 563
WD +LIPP + + PMDY+P K L R ++ D+ ++F +++++LG ICNAHVVHA
Sbjct: 63 TWDEKLIPPGKKSWNPMDYSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHA 122
Query: 564 DLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRV 623
DL A +C+ LA+L+ AVDF KTG A +P L+ ++YPDFM K+D Y+S+++
Sbjct: 123 DLSEYGAMDEKCIHLAELAATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKI 182
Query: 624 IGKLYRAVKDIAPPTATIKSFTKEVAMQS---YDTDMEVDGFEDYITDAFKYKTEYDNRL 680
+G+LYR++++ + ++EV + YD D+EV G D++ A++ K YD +L
Sbjct: 183 LGRLYRSIQE----ASNGDVVSQEVCTPNDLPYDIDLEVPGASDFLASAWQCKCSYDAQL 238
Query: 681 GNLMDYYGIKTEAEILSGCIMEMAKSFDKKR-DL-EAIIFAVKSLKKEARAWF-----NK 733
L+ Y ++TEAE+++G I + K+ KK+ D+ + + A +L+KE ++ F ++
Sbjct: 239 SALLSQYRVRTEAELVTGHITFLVKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIASDQ 298
Query: 734 KNESDSSHEDVY-AKASAWYHVAYHPSY----WGRYKEEGMNRTHFLSFPWCIHDKLIEI 788
D +Y KASAWY V YHP + G +G LSF W D L I
Sbjct: 299 CEIGDDEKNLLYEMKASAWYQVTYHPKWVEKSRGILGPDGEEIPASLSFAWIPVDYLARI 358
Query: 789 K---RGKQR 794
K GK R
Sbjct: 359 KLRCHGKVR 367
>gi|242809058|ref|XP_002485290.1| RNA-dependent RNA polymerase, putative [Talaromyces stipitatus ATCC
10500]
gi|218715915|gb|EED15337.1| RNA-dependent RNA polymerase, putative [Talaromyces stipitatus ATCC
10500]
Length = 1207
Score = 293 bits (751), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 214/723 (29%), Positives = 345/723 (47%), Gaps = 100/723 (13%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
++++ VTP+ +Y GP + NRV+R Y + D F+R+ F++E D + + S+
Sbjct: 415 IHRLSVTPTGIYLDGPNVEAENRVLRKYRHQSDYFIRVRFIEESGDPMMYDI------SS 468
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPE-----LTAAD 167
N +R +R LR+G++I D+ + L FS+S ++ S W A + +T
Sbjct: 469 NLDR--IFKDRFGEVLRDGVIIADRHYRFLGFSHSSLRSRSCWFMAEFHDSEGQLITVNS 526
Query: 168 IRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGI 227
+ +GDF I++ AK+AARLGQ+F + ++ VD ++ I DVE FSDG
Sbjct: 527 LISKLGDFSHIRSPAKFAARLGQTFSDTLTSISVDRDMVKRIDDVERNG----RVFSDGC 582
Query: 228 GKISAE-LAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYKSE 285
G IS E L I P+ FQ+R G KG++++DP + LR SM+K+++E
Sbjct: 583 GTISKEVLWRIYRDYPRNAAVRPTVFQVRISGAKGMLSLDPRLKGPTICLRDSMIKFRAE 642
Query: 286 ST-SLDILANSKYQ-PCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHE 343
+ +++I + + PC+LN LI +L LG+ +F + QRE V L + P +A
Sbjct: 643 ADHNIEICGSGIHSLPCYLNAPLIKILEDLGVARDLFLELQREEVQNLRLAIRSPRQAAS 702
Query: 344 ALELMSSGENTNV---LKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGR 400
L+ ++T + + L G + + FL ++ L +L+ R RI +
Sbjct: 703 FLDQAHITKSTRLSWLITVLQSMGLNYNQDKFLKRAVELVILMKLRDLKYRARILVPEAV 762
Query: 401 AMMGCLDETGTLESGQVFVQC--SASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHP 458
+ G +DETG L+ G++FV ++RR L V+ KV++ ++P HP
Sbjct: 763 TLYGIMDETGYLQEGEIFVPILNEVTKRRNIL-------------VQNKVLITRSPAFHP 809
Query: 459 GDMRVLRAVDVPS---LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPL 515
GD++++ AV+VP L + +CVVF KG+R ++ SG DLDGD++ + +D
Sbjct: 810 GDVQMVNAVNVPEASPLRKLHNCVVFSQKGERDLPSQLSGGDLDGDIFNIIYDPRFRLQR 869
Query: 516 QFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQC 575
P DY AP VL R + +ED++++F +++ D LG I H + AD + C
Sbjct: 870 LARPADYPRAPGTVLDRPVQMEDIQKFFIEFMQQDQLGRIATTHKILADQQAAGTFDPNC 929
Query: 576 LELAKLSTIAVDFSKTGVAATIPSGLRVEIY-PDFMEKQDKT------------------ 616
L LA L + AVDFSKTG I + Y PDFM +
Sbjct: 930 LTLAHLHSTAVDFSKTGTPVDIKQIPKYPPYRPDFMAPGPRVRVAESIEVLDDGREHIWD 989
Query: 617 -----------------CYESQRVIGKLYRAVKDI---------APPTATIKSFTKEV-- 648
Y+SQRV+G LYR + + +P K +K V
Sbjct: 990 DGGSIIDDDDDVRPPLRYYKSQRVLGALYRTINERDFIRELEWDSPNHQQQKQSSKSVNV 1049
Query: 649 --AMQSYDTDMEVDGF--EDYITDAFKYKTEYDNRLGNLMDYYG------IKTEAEILSG 698
A+ Y E GF + + DA+ + Y++ + +LM Y TE E+ G
Sbjct: 1050 LAAVWEY-VKCETAGFLWDHCVKDAYYIRDVYEDSIQDLMYQYSDAPWKTCLTEVEVFIG 1108
Query: 699 CIM 701
IM
Sbjct: 1109 NIM 1111
>gi|330921324|ref|XP_003299375.1| hypothetical protein PTT_10351 [Pyrenophora teres f. teres 0-1]
gi|311326958|gb|EFQ92511.1| hypothetical protein PTT_10351 [Pyrenophora teres f. teres 0-1]
Length = 1237
Score = 293 bits (751), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 195/575 (33%), Positives = 301/575 (52%), Gaps = 38/575 (6%)
Query: 55 KVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNE 114
K VTP+ + GP+ +SNR++R Y + F+R+ F DED S P S N
Sbjct: 443 KATVTPTGILLRGPDWDVSNRILRKYGTRTEYFMRVFFADEDG---LSVFHDPRASQDN- 498
Query: 115 ERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA----SRPELTAADIRE 170
+YER S LRNGI + ++ ++ L FS++ ++ + W A + A DI
Sbjct: 499 -----VYERFRSVLRNGISVSERTYQFLGFSHASLRTHQAWFMAPFEMNGTRFRARDIIS 553
Query: 171 SMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKI 230
+GDF I A+ +AR+GQ+F + ++ V S+ ++ +G T FSDG G I
Sbjct: 554 DLGDFSHIHCSARCSARIGQAFSDTIFSVPVSSTAYVTETKPDIVRNGRT--FSDGCGTI 611
Query: 231 SAELAEIVAKNCGFTIYT--PSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYKSEST 287
S E+ V T P+ QIR+ G KGV+++D + + +L +R+SM KY ++ T
Sbjct: 612 SLEILRKVWNTLPPERKTQRPTILQIRFRGAKGVLSLDESLAGEQLHIRQSMTKYIAKET 671
Query: 288 SLDI-LANSKYQP--CFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEA 344
D+ L + Y+P FLN Q I +L LG+ F+ Q E V L I PL A
Sbjct: 672 WRDLELCGAAYKPLQVFLNHQFIKILEDLGVPARNFKAVQDEAVNALKMITEHPLNAASF 731
Query: 345 LELMSSGENTNV--LKELL-MCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRA 401
LE SG V L EL+ G + FL +++ +NL L+ R RI I+ G
Sbjct: 732 LEYSHSGVYAKVPRLFELMHQIGLSFHADRFLTDIVEVAAMTNLRSLKYRARIPIEQGHL 791
Query: 402 MMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDM 461
+ G +DET L+ GQV++ + + S + + +V ++V+ + P LHPGD+
Sbjct: 792 LYGIMDETNFLQEGQVYIAT------QDYEKSGSGKLQRRILVGERIVITRAPALHPGDV 845
Query: 462 RVLRAVDVP---SLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFP 518
+++ AVDVP SL + +CVVF +G R ++ SG DLDGD++ + +D L+P P
Sbjct: 846 QLVTAVDVPANSSLRALHNCVVFSQRGARDLPSQLSGGDLDGDLFHIIYDQRLVPDFTVP 905
Query: 519 PMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLEL 578
P DY + L R + + D+ ++F +++ D LG I N H + AD + + +CL L
Sbjct: 906 PADYKSNGARDLGRPVEVNDIVDFFIEHMNMDRLGQISNKHKIRAD-KSTGTKDPECLLL 964
Query: 579 AKLSTIAVDFSKTGVAA---TIPSGLRVEIYPDFM 610
A+L++ AVDFSK+G+ A IP G I PDFM
Sbjct: 965 AQLASDAVDFSKSGIPADISKIPRGFD-HIRPDFM 998
>gi|452004258|gb|EMD96714.1| hypothetical protein COCHEDRAFT_106396 [Cochliobolus heterostrophus
C5]
Length = 931
Score = 293 bits (750), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 235/807 (29%), Positives = 378/807 (46%), Gaps = 136/807 (16%)
Query: 55 KVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNE 114
K VTP+ + GP+ +SNRV+R Y + F+R+ F DED +V +S N+
Sbjct: 137 KATVTPTGILLRGPDWDVSNRVLRKYSTRTEYFMRVFFADED----GLSVFHDSRASQNQ 192
Query: 115 ERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA----SRPELTAADIRE 170
+YER + L+NGI + + F+ L FS++ ++++ W A + A ++ +
Sbjct: 193 -----VYERFRNVLQNGISVAGRTFQFLGFSHASLRNHQAWFMAPFEMDGSLVRARNVIQ 247
Query: 171 SMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKI 230
+GDF I AK AAR+GQ+F + V + + +V+ + + + FSDG G I
Sbjct: 248 DLGDFSHIHCSAKCAARIGQAFSDT--IFSVPVPETAYVTEVKDDVERNSRTFSDGCGTI 305
Query: 231 SAELAEIVAKNCG--FTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYKSEST 287
S EL V + P+ QIRY G KGV+++D + S +L +RKSM KY ++ T
Sbjct: 306 SLELLRTVWRALPPERRQQRPTVLQIRYRGAKGVLSLDASLSDQQLHVRKSMTKYIAKET 365
Query: 288 SLDI-LANSKYQP--CFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEA 344
D+ L + Y+P FLN Q I +L LG+ F Q E V L I PL A
Sbjct: 366 WRDLELCGAAYKPLSVFLNHQFIKILEDLGVPAENFLHVQDEAVNTLKLITEHPLNAASF 425
Query: 345 LELMSS---GENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRA 401
L S + + + + G + FL +++ S+L L+ R RI I+ G
Sbjct: 426 LAYSHSCIFAKVPQLFEMMHRIGLPFHADRFLTDIVEVAAMSSLRSLKYRARIPIEKGYL 485
Query: 402 MMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELG---VVEGKVVVAKNPCLHP 458
+ G +DET TL+ G+V++ ++++G+L +V +++V + P LHP
Sbjct: 486 LYGVMDETNTLKYGEVYIATQD-----------HDKTGKLKRSILVGNQIIVTRAPALHP 534
Query: 459 GDMRVLRAVDVPS---LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPL 515
GD++++ AVDV L + +C+VF +G R ++ SG DLDGD++ + +D LIP
Sbjct: 535 GDIQLVDAVDVTDDSPLRALHNCIVFSQQGPRDLPSQLSGGDLDGDLFHIIYDQRLIPAY 594
Query: 516 QFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQC 575
P +Y AP K L R + D+ +F +Y+ D LG I N H + AD++P+ R C
Sbjct: 595 TVEPAEYDKAPAKDLGRPVEANDIVGFFIEYMKMDRLGQISNKHKIRADVKPNGTRHPDC 654
Query: 576 LELAKLSTIAVDFSKTGVAA---TIPSGLRVEIYPDFM---------------------- 610
L LAKL++ AVDFSKTGV A IP G+ PDFM
Sbjct: 655 LTLAKLASDAVDFSKTGVPADMSRIPKGID-HFRPDFMAPGSHLVINELGAAELAELEED 713
Query: 611 -------------EKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTK-----EVAMQS 652
+K Y S +++G LYRA+ + K F K E+ Q
Sbjct: 714 DIDDPDSISVLDADKGRIRYYRSDKILGILYRAIDE-------KKFFDKMKSDYEIFRQR 766
Query: 653 YDTDMEVDGFEDYI---TDAFKY----------KTEYDNRLGNLMDYYGIK-----TEAE 694
+ + VD + YI T ++ + Y+ + +MD TE E
Sbjct: 767 WGKESLVDKLKRYIIRETQGLQWEHHWDFAEQLRETYEENMLEIMDTLRPTRGQPLTELE 826
Query: 695 ILSGCI----------------MEMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESD 738
+ SG I +E+ + F+ RD+ +II K++ + W +++N ++
Sbjct: 827 VFSGNILSKKERAPSRYIREANLEVQERFN--RDVSSII---KTIVHGDKDWDSEENAAE 881
Query: 739 SSHEDVYAKASAWYHVAYHPSYWGRYK 765
+ ++ A + VA W Y+
Sbjct: 882 A-----LPRSIACFMVALEVKGWENYR 903
>gi|239613137|gb|EEQ90124.1| RNA-dependent RNA polymerase [Ajellomyces dermatitidis ER-3]
Length = 1154
Score = 292 bits (747), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 220/724 (30%), Positives = 350/724 (48%), Gaps = 104/724 (14%)
Query: 51 IYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLIS 110
+ +++V VTP +Y GP + NRV+R Y + +D+FLR+ F+DE D P+
Sbjct: 334 VSIHRVQVTPCGIYLDGPYMESKNRVLRRYANHVDHFLRVEFMDESGD--------PVRY 385
Query: 111 STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM----FASRPELTAA 166
+R L+NGI I +KFE L FS+S ++ + W +A A
Sbjct: 386 DPRASIDLIFQQRFKGVLKNGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYADGILYNAT 445
Query: 167 DIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDG 226
I +++G F I + AK AAR+GQ+F + ++ + I ++ DV D FSDG
Sbjct: 446 TIIQNLGRFDHINSPAKQAARIGQTFSETLTSIPISEEIISVVQDVRRNDR----VFSDG 501
Query: 227 IGKISAELAEIVAKNCGF-TIYTPSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKS 284
+G IS + ++ K+ T+ P+ FQIR G KG+V++D + + L LR SM+K+
Sbjct: 502 VGTISPSVMYMIWKDYSLRTMVKPTVFQIRIAGAKGMVSLDSRNKGESLVLRPSMIKFPV 561
Query: 285 EST----SLDILANS-KYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPL 339
++ +++I + + P FLN QLI +L LG+ +VF K QR+ + +L A T
Sbjct: 562 TTSFNAYNIEICGSGIRSLPFFLNAQLIKILEDLGVDGNVFLKLQRDEILRLRATATSTT 621
Query: 340 KAHEALELMSSGENTNVLKE---------LLMCGYKPDVEPFLLMMLQTFRASNLLELRT 390
+A + LE +TN+ K L G + + FL +++ L +L+
Sbjct: 622 QAAKFLE------DTNIAKSVGLPWLISILEALGLRHSDDEFLRRVMELVVLIKLRDLKY 675
Query: 391 RTRIFIQNGRAMMGCLDETGTLESGQVF-VQCSASRRREFLDNSCNNRSGELGVVEGKVV 449
R RI + + G +DETG L+ G++F S RRE L N KVV
Sbjct: 676 RARIRVPKAVTLFGIMDETGYLKEGEIFCTSLSDKGRREVLLNP-------------KVV 722
Query: 450 VAKNPCLHPGDMRVLRAVDVPS---LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVC 506
V ++P +HPGD+++ +AVDVP+ L + +C+ F G R + SG DLDGD+Y V
Sbjct: 723 VTRSPAMHPGDVQIAKAVDVPADSPLRQLHNCIAFSQHGDRDLPSMLSGGDLDGDLYNVI 782
Query: 507 WDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLE 566
++ LIP + PP Y EKVL R + +D+ ++F ++ D LG I H AD +
Sbjct: 783 FEDTLIPRVISPPAQYPRVQEKVLDRPVVRDDIIDFFVTFMQQDQLGRIATVHQTIADQK 842
Query: 567 PDKARSNQCLELAKLSTIAVDFSKTGVA---ATIPS-----------GLRVEIYP--DFM 610
QCL LA+L + AVDFSK+GV A IP G RV I +
Sbjct: 843 ALGTFDPQCLLLAELHSTAVDFSKSGVPVDLARIPKFPRYRPDFQAPGPRVRIAESLSLL 902
Query: 611 EKQDKTC-----------------YESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSY 653
E+ D+ Y+S++++GKLYRA+ ++ + + +AM +
Sbjct: 903 EEHDQMTVLDDDDEEEDERPTARYYKSEKILGKLYRAIDEVEFLQHRQNAIERSMAMAAP 962
Query: 654 D--------TDMEVDGF--EDYITDAFKYKTEYDNRLGNLMDYYGIK------TEAEILS 697
E GF + ++ +A + + Y++ L +M Y TE E+
Sbjct: 963 SVLKGVWAFVQSETVGFLWDHHVENALEIRQIYEDNLLEIMARYSSTPWKSSITEYEVFV 1022
Query: 698 GCIM 701
G I+
Sbjct: 1023 GTIL 1026
>gi|189200837|ref|XP_001936755.1| RNA-dependent RNA polymerase [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187983854|gb|EDU49342.1| RNA-dependent RNA polymerase [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 953
Score = 292 bits (747), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 197/578 (34%), Positives = 299/578 (51%), Gaps = 46/578 (7%)
Query: 55 KVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNE 114
K VTP+ + GP+ +SNR++R Y + F+R+ F DED S P S N
Sbjct: 137 KATVTPTGILLRGPDWDVSNRILRKYGTRTEYFMRVFFADEDG---LSVFHDPRASQGN- 192
Query: 115 ERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA----SRPELTAADIRE 170
+YER S L++GI + + ++ L FS++ ++ + W A + A DI
Sbjct: 193 -----VYERFRSVLQHGIFVAGRTYQFLGFSHASLRSHQAWFMAPFEMNGTMFRARDIIS 247
Query: 171 SMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKI 230
+GDF I A+ +AR+GQ+F + ++ V S+ ++ +G T FSDG G I
Sbjct: 248 DLGDFSHIHCSARCSARIGQAFSDTIFSVPVPSTAYVTETKADIARNGRT--FSDGCGTI 305
Query: 231 SAELAEIVAKNCG--FTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYKSEST 287
S E+ V P+ QIR+ G KGV+++D + +L +R+SM KY ++ T
Sbjct: 306 SLEILRKVWNTLPPERKAQRPTILQIRFRGAKGVLSLDESLVGEQLHIRQSMTKYIAKET 365
Query: 288 SLDI-LANSKYQP--CFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEA 344
D+ L + Y+P FLN Q I +L LG+ F+ Q E V L I PL A
Sbjct: 366 WRDLELCGAAYKPLQVFLNHQFIKILEDLGVPARNFKAVQDEAVNALKMITEHPLNAASF 425
Query: 345 LELMSSGENTNV--LKELL-MCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRA 401
LE SG V L EL+ G + FL +++ +NL L+ R RI I+ G
Sbjct: 426 LEYSHSGVYAKVPRLFELMHQIGLSFHADRFLTDIVEVAAMTNLRSLKYRARIPIEQGHL 485
Query: 402 MMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELG---VVEGKVVVAKNPCLHP 458
+ G +DET L+ GQV++ ++SG+L +V ++V+ + P LHP
Sbjct: 486 LYGIMDETNFLQEGQVYIATQDY-----------DKSGKLRRRILVGERIVITRAPALHP 534
Query: 459 GDMRVLRAVDVP---SLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPL 515
GD++++ AVDVP SL + +CVVF +G R ++ SG DLDGD++ + +D LIP
Sbjct: 535 GDVQLVTAVDVPEHSSLRALHNCVVFSQRGARDLPSQLSGGDLDGDLFHIIYDQRLIPDF 594
Query: 516 QFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQC 575
PP DY K L R + + D+ ++F +Y+ D LG I N H + AD + +C
Sbjct: 595 TMPPADYKSNGAKDLGRPVEVNDIVDFFIEYMNMDRLGQISNKHKIRAD-KSTGTNDPEC 653
Query: 576 LELAKLSTIAVDFSKTGVAA---TIPSGLRVEIYPDFM 610
L LA+L++ AVDFSK+G++A IP G I PDFM
Sbjct: 654 LLLAQLASDAVDFSKSGISADISKIPRGFD-HIRPDFM 690
>gi|261191013|ref|XP_002621915.1| RNA dependent RNA polymerase [Ajellomyces dermatitidis SLH14081]
gi|239590959|gb|EEQ73540.1| RNA dependent RNA polymerase [Ajellomyces dermatitidis SLH14081]
Length = 1239
Score = 291 bits (746), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 220/724 (30%), Positives = 350/724 (48%), Gaps = 104/724 (14%)
Query: 51 IYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLIS 110
+ +++V VTP +Y GP + NRV+R Y + +D+FLR+ F+DE D P+
Sbjct: 419 VSIHRVQVTPCGIYLDGPYMESKNRVLRRYANHVDHFLRVEFMDESGD--------PVRY 470
Query: 111 STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM----FASRPELTAA 166
+R L+NGI I +KFE L FS+S ++ + W +A A
Sbjct: 471 DPRASIDLIFQQRFKGVLKNGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYADGILYNAT 530
Query: 167 DIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDG 226
I +++G F I + AK AAR+GQ+F + ++ + I ++ DV+ D FSDG
Sbjct: 531 TIIQNLGRFDHINSPAKQAARIGQTFSETLTSIPISEEIISVVQDVKRNDR----VFSDG 586
Query: 227 IGKISAELAEIVAKNCGF-TIYTPSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKS 284
+G IS + ++ K+ T+ P+ FQIR G KG+V++D + + L LR SM+K+
Sbjct: 587 VGTISPSVMYMIWKDYSLRTMVKPTVFQIRIAGAKGMVSLDSRNKGESLVLRPSMIKFPV 646
Query: 285 EST----SLDILANS-KYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPL 339
++ +++I + + P FLN QLI +L LG+ +VF K QR+ + +L A T
Sbjct: 647 TTSFNAYNIEICGSGIRSLPFFLNAQLIKILEDLGVDGNVFLKLQRDEILRLRATATSTT 706
Query: 340 KAHEALELMSSGENTNVLKE---------LLMCGYKPDVEPFLLMMLQTFRASNLLELRT 390
+A + LE +TN+ K L G + + FL +++ L +L+
Sbjct: 707 QAAKFLE------DTNIAKSVGLPWLISILEALGLRHSDDEFLRRVMELVVLIKLRDLKY 760
Query: 391 RTRIFIQNGRAMMGCLDETGTLESGQVF-VQCSASRRREFLDNSCNNRSGELGVVEGKVV 449
R RI + + G +DETG L+ G++F S RRE L N KVV
Sbjct: 761 RARIRVPKAVTLFGIMDETGYLKEGEIFCTSLSDKGRREVLLNP-------------KVV 807
Query: 450 VAKNPCLHPGDMRVLRAVDVPS---LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVC 506
V ++P +HPGD+++ +AVDVP+ L + +C+ F G R + SG DLDGD+Y V
Sbjct: 808 VTRSPAMHPGDVQIAKAVDVPADSPLRQLHNCIAFSQHGDRDLPSMLSGGDLDGDLYNVI 867
Query: 507 WDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLE 566
+ LIP + PP Y EKVL R + +D+ ++F ++ D LG I H AD +
Sbjct: 868 FKDTLIPRVISPPAQYPRVQEKVLDRPVVRDDIIDFFVTFMQQDQLGRIATVHQTIADQK 927
Query: 567 PDKARSNQCLELAKLSTIAVDFSKTGVA---ATIPS-----------GLRVEIYPDF--M 610
QCL LA+L + AVDFSK+GV A IP G RV I +
Sbjct: 928 ALGTFDPQCLLLAELHSTAVDFSKSGVPVDLARIPKFPRYRPDFQAPGPRVRIAESLSLL 987
Query: 611 EKQDKTC-----------------YESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSY 653
E+ D+ Y+S++++GKLYRA+ ++ + + +AM +
Sbjct: 988 EEHDQMTVLDDEEEEEDERPTARYYKSEKILGKLYRAIDEVEFLQHRQNAIERSMAMAAP 1047
Query: 654 D--------TDMEVDGF--EDYITDAFKYKTEYDNRLGNLMDYYGIK------TEAEILS 697
E GF + ++ +A + + Y++ L +M Y TE E+
Sbjct: 1048 SVLKGVWAFVQSETVGFLWDHHVENALEIRQIYEDNLLEIMARYSSTPWKSSITEYEVFV 1107
Query: 698 GCIM 701
G I+
Sbjct: 1108 GTIL 1111
>gi|296810484|ref|XP_002845580.1| RNA-dependent RNA polymerase [Arthroderma otae CBS 113480]
gi|238842968|gb|EEQ32630.1| RNA-dependent RNA polymerase [Arthroderma otae CBS 113480]
Length = 1152
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 241/817 (29%), Positives = 385/817 (47%), Gaps = 119/817 (14%)
Query: 46 LDDGLIYVNKVLV-----TPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKL 100
LD L++ N VLV TP +Y GP + NR++R Y D FLR+ F+DE+ D
Sbjct: 353 LDFNLVHQNNVLVHRAMVTPCGIYLLGPYAEVKNRILRKYLGNTDYFLRVEFLDENGD-- 410
Query: 101 YSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA-- 158
P+ N +ER ++ GI + + F L FS+S ++ + W A
Sbjct: 411 ------PVFFDPNANLEKIFHERFSGVMKRGIEVAGRNFNFLGFSHSSLRSQTCWFAAPF 464
Query: 159 SRPE---LTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI-IPDVEV 214
+ P+ L A I S+G F I++ +K AAR+GQ+F + ++ V + + +PDVE
Sbjct: 465 TTPDGEYLDARTIINSIGHFDHIRSPSKQAARIGQAFSDTLTSISVSKEAVRLRVPDVER 524
Query: 215 EDDGITYCFSDGIGKISAELAEIVAKNCGFT-IYTPSAFQIRYGGYKGVVAVDPTSSTK- 272
FSDG+G IS EL + P+ FQIR G KG+V++D + +
Sbjct: 525 NGR----IFSDGVGVISRELMYKIWNEYALREKVKPTVFQIRIAGAKGMVSLDTSRQGEF 580
Query: 273 LSLRKSMLKYKSE-STSLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQ 330
L LR+SM+K+ ++ S +++I A K P +LN Q+I +L LG+ F + Q++ +
Sbjct: 581 LMLRESMVKFPTDDSYNIEICGAGIKALPFYLNSQIIKILEDLGVPFAAFHQLQQDEILS 640
Query: 331 LDAILTDPLKAHEALE---LMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLE 387
L + +A + LE + S +L L G + ++PFL +++ L +
Sbjct: 641 LYSTFNSTEQAAKFLEDSPVPRSLRLPWLLLVLKGLGLRYTLDPFLHRIMELTTLLKLRD 700
Query: 388 LRTRTRIFIQNGRAMMGCLDETGTLESGQVF-VQCSASRRREFLDNSCNNRSGELGVVEG 446
L+ R RI + N + G +DETG L+ +++ V S RRE L V
Sbjct: 701 LKYRARIRVPNAVTLYGIMDETGYLKENEIYCVFLSEDGRREIL-------------VRD 747
Query: 447 KVVVAKNPCLHPGDMRVLRAVDVPS---LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVY 503
VVV ++P LHPGD++V+ AVDVP+ L + +CV F G R + SG DLDGD+Y
Sbjct: 748 NVVVTRSPALHPGDVQVVNAVDVPANSPLRRLHNCVAFSQHGVRDLPSMLSGGDLDGDLY 807
Query: 504 FVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHA 563
+ +D LIP FPP DY + L R + D+ ++F ++ D LG I H A
Sbjct: 808 NIIYDTRLIPQQTFPPADYPLVKTRELNRKVESNDIIDFFVTFMQQDQLGRIATTHQAIA 867
Query: 564 DLEPDKARSNQCLELAKLSTIAVDFSKTGVAAT---IPSGLRVEIYPDFM---------- 610
D R CL+LA L ++AVD+SK+G+ IP R+ PDFM
Sbjct: 868 DQSSLGTRDETCLKLAHLHSVAVDYSKSGIPVNVLDIPRAPRIR--PDFMAPSPRILIED 925
Query: 611 ----------EKQDKTC--------------YESQRVIGKLYRAVKDIA-----PPTATI 641
+ +KT Y+S ++G+LYR++ + + T+
Sbjct: 926 SIEDSIEHIIRETEKTVQEDDDDNDRPRIRYYKSHNILGRLYRSIDEQSFLRRLRDVGTV 985
Query: 642 KSFTKEVAMQSY--DTDMEVDG-FEDYITD-AFKYKTEYDNRLGNLMDYYGIK------T 691
+ +++ +QS + EVDG F +++T K Y+++L LM Y T
Sbjct: 986 NNDSRKSVLQSIWRYVEKEVDGFFWNHLTGICHDIKEIYEDQLRELMRQYSATPWKSSIT 1045
Query: 692 EAEILSGCIMEMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNE--------SDSSHED 743
E E++ G I+ ++RD K KE RA +++ E ++S +
Sbjct: 1046 EYEVVVGTILGPGHK-QRRRD--------KETSKEMRASYSRLVEFTISMIRDTESGGTE 1096
Query: 744 VYAKASAWYHVAYH-PSYWGRYKEEGMNRTHFLSFPW 779
++ A + VA + S+ + N+ LSFPW
Sbjct: 1097 ALERSIACFWVAINEQSFSQKPGFRNANQEKLLSFPW 1133
>gi|429863873|gb|ELA38280.1| RNA-dependent RNA polymerase [Colletotrichum gloeosporioides Nara
gc5]
Length = 1308
Score = 290 bits (741), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 193/633 (30%), Positives = 318/633 (50%), Gaps = 71/633 (11%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISS 111
+V K +VTP++V GPE+ NR++R + + D F+R+ F DED L+ +P ++
Sbjct: 439 WVFKAMVTPTRVTLHGPEMEPLNRILRKHRNHTDYFMRVQFCDEDGTDLW---FNPRVN- 494
Query: 112 TNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAA----- 166
+ ++ER + L GI + + ++ L FS+S ++ ++ W A + +
Sbjct: 495 -----YEDVFERYKNVLNKGIQVAGRIYQFLGFSHSSLRSHAAWFMAPFVDDSGEMQLYR 549
Query: 167 DIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI--IPDVEVEDDGITYCFS 224
I +S+GDF I+ AK AAR+GQ+F + + + SDI IPD++ G FS
Sbjct: 550 HIIKSLGDFEHIQIPAKCAARIGQTFSETPAFISLTDSDISAWNIPDIKSSIGGDDRVFS 609
Query: 225 DGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSL--RKSMLKY 282
DG+G IS E E++ P+ QIR+GG KG++++D ++ R+SM K+
Sbjct: 610 DGVGTISREALELIWPRLPRGSLIPTCLQIRWGGVKGMLSLDTRLPGRVMCIRRESMEKF 669
Query: 283 KSEST-SLDILAN-SKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLK 340
S+ T +L+I SK LNRQ+I +L LG+R+ F + Q+ + +L A+ D
Sbjct: 670 PSQDTENLEICGGASKPLKLVLNRQMIKILEDLGVRNDFFLRLQKTELDRLRAVTADAYN 729
Query: 341 AHEALELMSSGEN---TNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQ 397
L + G N + +K L G + FL ++Q L L+ + RI +
Sbjct: 730 TGTFLHMQGIGLNCFLPSFIKSLDKYGIDYRRDDFLRTVVQNVVLQELRLLKHKARIPVP 789
Query: 398 NGRAMMGCLDETGTLESGQVFVQCSASRR--REFLDNSCNNRSGELGVVEGKVVVAKNPC 455
G + G +DETG L G+V++ RR R +D S +G V+V ++P
Sbjct: 790 KGVTVFGVMDETGFLREGEVYIAYDTYRRPGRTSIDGSLR---------DGPVLVTRSPA 840
Query: 456 LHPGDMRVLRAVDVPSLH---HMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI 512
LHPGD+++++ P+ H ++ +C+ F G+R ++ SG DLDGD+Y + WD + +
Sbjct: 841 LHPGDIQLVKMRTPPAGHPLRNLRNCIAFSQFGRRDLPSQLSGGDLDGDLYNIIWDRDAM 900
Query: 513 PPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARS 572
P + + DY L R + ED+ +F D++ +D LG+I H+V +D +P+
Sbjct: 901 PKVTYKAADYPRVTPAALGRTVEREDMANWFVDFMQSDCLGLIATRHLVVSDQDPNGTLG 960
Query: 573 NQCLELAKLSTIAVDFSKTGVAA---TIPSGLRVEIYPDFM------------------- 610
N CL LA L + AVDFSKTG+ IP R PDF+
Sbjct: 961 NDCLTLAGLHSTAVDFSKTGIPVDTKEIPKAPRFR--PDFLAPAPPAHIFDRNEIEFIGK 1018
Query: 611 ----EKQDKTC------YESQRVIGKLYRAVKD 633
E+ D+ Y+S++++G LYR V +
Sbjct: 1019 NETLEEDDEDMLPPHQYYKSEKILGILYRNVDE 1051
>gi|358378399|gb|EHK16081.1| hypothetical protein TRIVIDRAFT_10390, partial [Trichoderma virens
Gv29-8]
Length = 1247
Score = 290 bits (741), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 225/709 (31%), Positives = 341/709 (48%), Gaps = 84/709 (11%)
Query: 40 TSP-AVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLD 98
TSP L + +V KV+VTP+++ GP+ NRV+R +P D F R+ F DED
Sbjct: 412 TSPYGPQLPEHQAWVLKVMVTPTRIMLHGPDGENKNRVLRMFPQHSDYFARVIFGDEDGQ 471
Query: 99 KLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM-- 156
L L+ S N ++ I+ER +++GI + +KFE L FS+S ++ +S W
Sbjct: 472 DL------ALLPSVN---NSAIFERYRKIMKDGIHVAGRKFEFLGFSHSSLRSHSAWFCA 522
Query: 157 -FASRPELTAAD-IRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI--IPDV 212
F + EL D I S+GDF DI+ AK AAR+GQ+F + A+ + I I IPDV
Sbjct: 523 PFVDKMELQNNDSIIRSLGDFSDIRIPAKCAARIGQAFSETPYAVDILKCGIGIKYIPDV 582
Query: 213 EVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK 272
+ D FSDG+G IS + E + P+ FQ+R GG KG++++D K
Sbjct: 583 KTADG--KRVFSDGVGTISWDAMEEIWDRLPMNNSAPTCFQVRLGGIKGMLSLDSRLKGK 640
Query: 273 -LSLRK-SMLKY-KSESTSLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGV 328
+ +RK SM+K+ S+ T+L I SK LNRQ I +L +G F +Q + +
Sbjct: 641 VICIRKESMMKFPSSDQTTLGICDTASKPLRLVLNRQTIKILEDMGTNFEWFIDQQNKAL 700
Query: 329 AQLDAILTDPLKAHEALELMSSGENTN---VLKELLMCGYKPDVEPFLLMMLQTFRASNL 385
L + LE G N ++K L G + F+ ++ L
Sbjct: 701 DVLRNVTASASNTSTFLESQLVGTNVGFPKLIKYLNKVGIDYRRDKFMKKVVDHTILREL 760
Query: 386 LELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVE 445
L+ + RI + G + G +DETG LE GQ++V +S D + G L +
Sbjct: 761 RLLKHKARIPVDQGVTLFGIMDETGFLEEGQIYVTFDSS-----YDKAQGRVKGSLK--D 813
Query: 446 GKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVD---CVVFPAKGKRPHTNECSGSDLDGDV 502
G V++ ++P LHPGD+++ + + P H + D CVVF KG R ++ SG DLDGD+
Sbjct: 814 GFVLITRSPALHPGDIQLAQVMTPPHGHPLRDLRNCVVFSQKGSRDLPSQLSGGDLDGDL 873
Query: 503 YFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVH 562
Y + WD +IP F P DY L R +T ED+ ++F ++ D LG+I N H +
Sbjct: 874 YSIFWDPFVIPKSYFTPADYPRVTPPALDRVVTREDIADFFVKFMETDILGMIANRHQIF 933
Query: 563 ADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATI---PSGLRVEIYPDF---------- 609
AD + + C LA+L + AVD+SKTG+ TI P R+ PDF
Sbjct: 934 ADFKDEGTVDQVCTNLAELHSTAVDYSKTGIPVTIQQLPKAPRLR--PDFLAPAPPTRLY 991
Query: 610 --------------------MEKQDKTCYESQRVIGKLYRAV-------KDIAPPT-ATI 641
M K Y+SQ+++G+LYR V +D+ P +
Sbjct: 992 DRGEVSHIGDPESDEDDEDGMGASKKGYYKSQKILGELYRGVDEEKIWGQDVQRPVEMSG 1051
Query: 642 KSFTKEVAMQSYDTDME---VDGFEDY---ITDAFKYKTEYDNRLGNLM 684
S +++ Y ME V DY + +A+K + Y ++ N M
Sbjct: 1052 SSLWEDLNKHVYAALMEEGCVASDVDYTRRVEEAWKLRELYQTQVSNSM 1100
>gi|453080014|gb|EMF08066.1| RdRP-domain-containing protein, partial [Mycosphaerella populorum
SO2202]
Length = 446
Score = 290 bits (741), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 174/441 (39%), Positives = 244/441 (55%), Gaps = 38/441 (8%)
Query: 120 IYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIK 179
++ RV + GI +G + +E LAF N+Q +D+ + FAS +TAADIR+ MGDF I+
Sbjct: 11 VFSRVKRAMAQGINVGGRHYEFLAFGNAQFRDHGAYFFASTTGVTAADIRDWMGDFTSIR 70
Query: 180 NVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVA 239
+AKY +RLGQ F ++R H + ++E I DVE +CF+DG+GKIS LA ++A
Sbjct: 71 IIAKYVSRLGQCFSTTRAIPH--AVNVEKIDDVERN----GFCFTDGVGKISPFLARMIA 124
Query: 240 KNCGFTIYT---PSAFQIRYGGYKGVVAVDP-TSSTKLSLRKSMLKYKSESTSLDILANS 295
+ G PS FQIR G KGV+AVDP K+ +R S K+ ++S L+I S
Sbjct: 125 HHYGMANSEQDYPSVFQIRLAGCKGVLAVDPRLKGMKIQIRPSQQKFPAKSNGLEICRIS 184
Query: 296 KYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTN 355
++ LN QLI +LS LG+ D VF K R ++ L L KA LEL+ + N
Sbjct: 185 QFSTASLNVQLILVLSALGVPDEVFLNKLRNMLSDLQEALDSEQKA---LELLQKNVDFN 241
Query: 356 VLKELLMC----GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGT 411
+ L C G+ +PF++ L+ +R+ NL L+ + RIFI G ++GC DE+ T
Sbjct: 242 QMTISLACMIFDGFMATKDPFVMTCLRLWRSWNLKYLKEKARIFIDQGAFLLGCTDESAT 301
Query: 412 LES-------------GQVFVQCSASRRRE------FLDNSCNNRSGELGVVEGKVVVAK 452
L Q + + E FL + G VV G VV+A+
Sbjct: 302 LRGHFKSVADPNGILKDQQSTEADVDKHDESALPEIFLQIPDAEKPGSYKVVTGIVVLAR 361
Query: 453 NPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI 512
NP LHPGD+RV++AVD +L H+ +CVV P G R N CSG DLDGD + V WD ELI
Sbjct: 362 NPSLHPGDIRVVKAVDNAALRHLKNCVVLPQTGDRDVANMCSGGDLDGDDFIVMWDKELI 421
Query: 513 PP-LQFPPMDYTPAPEKVLAR 532
PP PMDYT +P+ V+A+
Sbjct: 422 PPEWNHEPMDYT-SPDPVMAK 441
>gi|402590834|gb|EJW84764.1| RNA-dependent RNA polymerase, partial [Wuchereria bancrofti]
Length = 1136
Score = 288 bits (738), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 236/820 (28%), Positives = 397/820 (48%), Gaps = 125/820 (15%)
Query: 46 LDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVL 105
L + + KV+ TP ++ PE+ ++NRV+R + +E LR F D++ +L
Sbjct: 55 LPQNCVLIRKVMATPLRLLLLPPEVMMTNRVIRHFGEEYA--LRCVFRDDNGQRLVPKEF 112
Query: 106 SPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFAS------ 159
+ + +++ I + + TL G+ I + ++ LA+SNSQ++D +M++
Sbjct: 113 TR--GRSLQDQSLIIPDLIYRTLGTGLHIASRHYQFLAWSNSQMRDGGCYMYSDATVNDE 170
Query: 160 -RPELT--AADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDI----EIIPDV 212
E+ DIR MGDF KNV K +R+GQ F ++ + + D +I+ +
Sbjct: 171 VHGEMVYNVEDIRRWMGDFTASKNVPKLMSRMGQCFTQAQPTIMLKKDDWKVEDDILGGI 230
Query: 213 EVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK 272
+ G + FSDG+G+IS + A+ +AK G TPS +Q+R+ G+KGV+ +DP
Sbjct: 231 VHPETGEVFNFSDGVGRISKKYADRIAKTLGLCP-TPSCYQVRFKGFKGVLCIDPLLD-- 287
Query: 273 LSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQR------- 325
L ++ + ++ T ++++ S P LNR LI +L D V EK+ R
Sbjct: 288 -ELDQANIVFRK--TEVEVVKYSMPSPVCLNRPLIMIL------DQVSEKQGRHLHKKVC 338
Query: 326 --------------------EGVA--QLDAILTDPLKAHEALELMSSG---ENTNVLKEL 360
E +A +L + L+ P+ H+ L S+G N + L
Sbjct: 339 NRIHSLLELELDKLAAMMFDENIATEELSSRLSLPIDFHQ---LHSNGITFTNEPFFRSL 395
Query: 361 LMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQN------GRAMMGCLDETGTLES 414
L+ ++ ++ FL + + A+ ++ R ++ IQN GR M G +D+TG L+
Sbjct: 396 LIAVHRYNISWFLTLYEYSNIATGII-FRIASKQ-IQNFLPCSMGRTMYGVIDDTGLLQY 453
Query: 415 GQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHH 474
GQVF+Q S+S + V G V+V KNPC GD+R+ AV +L H
Sbjct: 454 GQVFIQYSSSMQYVLTKKI---------VYTGSVMVTKNPCHVAGDVRMFEAVYQDALLH 504
Query: 475 MVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDM 534
+ D +VFP G RPH++E +GSDLDGD Y V +D EL M + +
Sbjct: 505 LCDVIVFPRYGPRPHSDEMAGSDLDGDEYTVIFDKELFFENNERAMFFPKSIPSECGTPP 564
Query: 535 TIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVA 594
T D+ ++F Y+ DS+G + NAH++ C ++A+ +AVDF KTGVA
Sbjct: 565 TTGDMIDFFLKYLSQDSIGRMSNAHLI----------IEICDDIARKCAVAVDFPKTGVA 614
Query: 595 AT-IPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKS--FTKEVAMQ 651
A + S + E+ PD+M+ + Y S+R++G+LYR + + + ++ F Q
Sbjct: 615 AKPLLSHEQCEVMPDYMQNMIRPSYRSKRLLGELYRKARRVEDISEIVQGTKFADYCDPQ 674
Query: 652 SYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKR 711
YD + + E I ++ + + EY +R+ LMD YGI EA ++SG M + + + ++
Sbjct: 675 LYDESLFHEQSE-LIQESLRLRDEYHSRIQQLMDEYGISDEASVISGHSMTIKRIIEMEK 733
Query: 712 DLEAIIFAVKSLK-KEAR--AWFNKK------NESDSSHEDVYA------------KASA 750
D + + K ++ + +R ++F ++ ESD D + KA A
Sbjct: 734 DDYSFYHSDKIVELRYSRIFSYFRREFFKEFGGESDFLTVDAFGKREMRWNMALITKAKA 793
Query: 751 WYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIKR 790
WY V Y ++ + F SFPW + D L+ IKR
Sbjct: 794 WYAVTYTSAF---------RSSEFRSFPWIVWDILLIIKR 824
>gi|347830482|emb|CCD46179.1| similar to rna-dependent rna polymerase [Botryotinia fuckeliana]
Length = 1203
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 215/730 (29%), Positives = 365/730 (50%), Gaps = 104/730 (14%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKL-YSTVLSPLISS 111
+++V +TP+ Y GPE +NR++R Y NF+R++F DED D+L Y++ ++
Sbjct: 421 IHRVTITPAGFYLDGPEPESNNRILRKYAGNHSNFVRVTFCDEDGDRLQYAS------NA 474
Query: 112 TNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPE----LTAAD 167
+N+E + ++ +VL ++G IG +K+E L S+S ++ S W A + A
Sbjct: 475 SNDEIYDGVFRKVL---QDGFSIGKQKYEYLGSSHSSLRTQSCWFVAPFTQNDIYYDALH 531
Query: 168 IRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSS-DIEIIPDVEVEDDGITYCFSDG 226
I + +G F DI++ AK AAR+GQ+F + L +D + +E + D+E FSDG
Sbjct: 532 ITQDLGRFGDIRSPAKCAARIGQAFSDTPNTLTLDETVTVETVADIERNG----RVFSDG 587
Query: 227 IGKISAELAE-IVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYK- 283
+G +S +L E I + + P+ FQIRY G KG++++D KL LR+SM+K++
Sbjct: 588 VGTMSEKLMEKIWDRLPDKYLVKPTCFQIRYRGAKGMISLDSRLPGVKLRLRESMIKFEG 647
Query: 284 SESTSLDILANS-KYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAH 342
S S L+I + K P +LNRQ I +L LG+ F + Q + V++L I A
Sbjct: 648 STSNDLEICGGAYKPLPMYLNRQFIKILEDLGVEPEYFMRLQAKEVSRLREITASAYNAS 707
Query: 343 EALELMSSGENTNVLKELLMCG-----YKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQ 397
L+ G+ + + + C ++ D+ FL +L+ L L+ + RI ++
Sbjct: 708 TFLQSKRVGDVVLLPQLIEHCSALDLDFRNDL--FLRDILEMTVLIELRTLKHKARIPVE 765
Query: 398 NGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLH 457
G + G +DETG LE G+++ +R L V VV+ + P LH
Sbjct: 766 RGYHLHGIMDETGILEEGEIYCCWIEDGKRTTL-------------VGSNVVITRAPALH 812
Query: 458 PGDMRVLRAVDVPS---LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP 514
PGD+++ AV+VPS L+ + +CV F KG R ++ SG DLDGD+Y+V +D ++
Sbjct: 813 PGDIQLANAVNVPSDSPLNRLYNCVCFSQKGARDLPSQLSGGDLDGDLYYVIFDEDMKLK 872
Query: 515 LQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQ 574
P DY+ + + R + ED+ ++F ++ D LGVI N H V+AD + +
Sbjct: 873 RTVKPADYSRSLPLDIGRPVKQEDMADFFLTFMKTDQLGVISNRHQVYADQDVMGTECSD 932
Query: 575 CLELAKLSTIAVDFSKTGVAATI--PSGLRVEIY-PDF---------------------- 609
CL+LA+L + AVD+SKTG+ + PS R ++ PDF
Sbjct: 933 CLKLAELCSTAVDYSKTGIPPKLNDPSVPRHSLWRPDFMAPGPHVKISHRPDDRLGFAEK 992
Query: 610 ------MEKQDKTC----YESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEV 659
M+++D+ YES++ G+LYRA+ + + +++ +Q+ D+ +
Sbjct: 993 YIPIEVMDEEDEVTNIKYYESKKACGQLYRAIDE-----RKVFEDIQKLNVQANDSPDVI 1047
Query: 660 DGFEDYI-------------TDAFKYKTEYDNRLGNLMDYYGIK-----TEAEILSGCIM 701
+++ DA + + YDN + ++M Y +E E+ G I+
Sbjct: 1048 QHMWEFVKSRSQGIQWQHLRKDALEIQEIYDNNMLDIMHQYSEHPTRPISEREVFVGNIL 1107
Query: 702 EMAKSFDKKR 711
S KK+
Sbjct: 1108 GKVGSVSKKQ 1117
>gi|327354796|gb|EGE83653.1| RNA-dependent RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1240
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 220/725 (30%), Positives = 351/725 (48%), Gaps = 105/725 (14%)
Query: 51 IYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLIS 110
+ +++V VTP +Y GP + NRV+R Y + +D+FLR+ F+DE D P+
Sbjct: 419 VSIHRVQVTPCGIYLDGPYMESKNRVLRRYANHVDHFLRVEFMDESGD--------PVRY 470
Query: 111 STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM----FASRPELTAA 166
+R L+NGI I +KFE L FS+S ++ + W +A A
Sbjct: 471 DPRASIDLIFQQRFKGVLKNGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYADGILYNAT 530
Query: 167 DIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDG 226
I +++G F I + AK AAR+GQ+F + ++ + I ++ DV+ D FSDG
Sbjct: 531 TIIQNLGRFDHINSPAKQAARIGQTFSETLTSIPISEEIISVVQDVKRNDR----VFSDG 586
Query: 227 IGKISAELAEIVAKNCGF-TIYTPSAFQIRYG-GYKGVVAVDPTSSTK-LSLRKSMLKYK 283
+G IS + ++ K+ T+ P+ FQIR G KG+V++D + + L LR SM+K+
Sbjct: 587 VGTISPSVMYMIWKDYSLRTMVKPTVFQIRIAAGAKGMVSLDSRNKGESLVLRPSMIKFP 646
Query: 284 SEST----SLDILANS-KYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDP 338
++ +++I + + P FLN QLI +L LG+ +VF K QR+ + +L A T
Sbjct: 647 VTTSFNAYNIEICGSGIRSLPFFLNAQLIKILEDLGVDGNVFLKLQRDEILRLRATATST 706
Query: 339 LKAHEALELMSSGENTNVLKE---------LLMCGYKPDVEPFLLMMLQTFRASNLLELR 389
+A + LE +TN+ K L G + + FL +++ L +L+
Sbjct: 707 TQAAKFLE------DTNIAKSVGLPWLISILEALGLRHSDDEFLRRVMELVVLIKLRDLK 760
Query: 390 TRTRIFIQNGRAMMGCLDETGTLESGQVF-VQCSASRRREFLDNSCNNRSGELGVVEGKV 448
R RI + + G +DETG L+ G++F S RRE L N KV
Sbjct: 761 YRARIRVPKAVTLFGIMDETGYLKEGEIFCTSLSDKGRREVLLNP-------------KV 807
Query: 449 VVAKNPCLHPGDMRVLRAVDVPS---LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFV 505
VV ++P +HPGD+++ +AVDVP+ L + +C+ F G R + SG DLDGD+Y V
Sbjct: 808 VVTRSPAMHPGDVQIAKAVDVPADSPLRQLHNCIAFSQHGDRDLPSMLSGGDLDGDLYNV 867
Query: 506 CWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADL 565
++ LIP + PP Y EKVL R + +D+ ++F ++ D LG I H AD
Sbjct: 868 IFEDTLIPRVISPPAQYPRVQEKVLDRPVVRDDIIDFFVTFMQQDQLGRIATVHQTIADQ 927
Query: 566 EPDKARSNQCLELAKLSTIAVDFSKTGVA---ATIPS-----------GLRVEIYP--DF 609
+ QCL LA+L + AVDFSK+GV A IP G RV I
Sbjct: 928 KALGTFDPQCLLLAELHSTAVDFSKSGVPVDLARIPKFPRYRPDFQAPGPRVRIAESLSL 987
Query: 610 MEKQDKTC-----------------YESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQS 652
+E+ D+ Y+S++++GKLYRA+ ++ + + +AM +
Sbjct: 988 LEEHDQMTVLDDDDDEEDERPTARYYKSEKILGKLYRAIDEVEFLQHRQNAIERSMAMAA 1047
Query: 653 YD--------TDMEVDGF--EDYITDAFKYKTEYDNRLGNLMDYYGIK------TEAEIL 696
E GF + ++ +A + + Y++ L +M Y TE E+
Sbjct: 1048 PSVLKGVWAFVQSETVGFLWDHHVENALEIRQIYEDNLLEIMARYSSTPWKSSITEYEVF 1107
Query: 697 SGCIM 701
G I+
Sbjct: 1108 VGTIL 1112
>gi|212537491|ref|XP_002148901.1| RNA-dependent RNA polymerase, putative [Talaromyces marneffei ATCC
18224]
gi|210068643|gb|EEA22734.1| RNA-dependent RNA polymerase, putative [Talaromyces marneffei ATCC
18224]
Length = 1207
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 211/722 (29%), Positives = 338/722 (46%), Gaps = 100/722 (13%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
++++ VTP+ +Y GP + NRV+R Y ++ D F+R+ F++E D L + S L
Sbjct: 417 IHRLSVTPTGLYLDGPNVEAENRVLRKYRNQSDQFIRVRFIEESGDPLMYDISSNL---- 472
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPE------LTAA 166
I++R LR+G++I D+ + L FS+S ++ S W A + +T
Sbjct: 473 -----DPIFDRFREVLRDGVIIADRHYRFLGFSHSSLRSRSCWFMAEFHDSVTGEFITVN 527
Query: 167 DIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDG 226
+ +GDF IK +K+AARLGQ+F + ++ VD ++ I DVE FSDG
Sbjct: 528 KLISKLGDFDHIKAPSKFAARLGQTFSDTLTSISVDKDMVKRIDDVERNG----RVFSDG 583
Query: 227 IGKISAE-LAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYKS 284
G IS E L I P+ FQ+R G KG++++DPT + LR SM+K+++
Sbjct: 584 CGTISKEILWRIYRDYPRNAAVRPTVFQVRISGAKGMLSLDPTLKGPTICLRDSMIKFRA 643
Query: 285 ES-TSLDILANSKYQ-PCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAH 342
E+ +++I + + PC+LN LI +L LG+ +F + QRE V L + P A
Sbjct: 644 EADNNIEICGSGIHSLPCYLNAPLIKILEDLGVPRDLFLELQREEVESLRQTVRSPQHAA 703
Query: 343 EALELMSSGENTNV---LKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNG 399
L+ ++T + + L G + + FL ++ L +L+ + RI + +G
Sbjct: 704 VFLDQAHISKSTRLSWLITLLQSMGVNYNQDGFLKRAVELVILMKLRDLKYKARILVPDG 763
Query: 400 RAMMGCLDETGTLESGQVFVQC--SASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLH 457
+ G +DETG L+ G++FV ++RR+ L V+ V++ ++P H
Sbjct: 764 VTLYGIMDETGYLKEGEIFVPILNEETKRRDIL-------------VQDDVLITRSPAFH 810
Query: 458 PGDMRVLRAVDVPS---LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP 514
PGD+++ AV+VP L + +CVVF KG R ++ SG DLDGD++ + +D
Sbjct: 811 PGDVQLANAVNVPEDSPLRKLHNCVVFSQKGTRDLPSQLSGGDLDGDIFNIIYDPRFRLR 870
Query: 515 LQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQ 574
P DY P L R + I+D++++F ++ D LG I H + AD +
Sbjct: 871 RLAKPADYPRVPGTELGRPVQIDDIQDFFVTFMQQDQLGRIATTHKILADQQVKGTFDPN 930
Query: 575 CLELAKLSTIAVDFSKTGVAATIPSGLRVEIY-PDFMEKQDKT----------------- 616
CL LA+L + AVDFSKTG I R Y PDFM +
Sbjct: 931 CLTLAQLHSTAVDFSKTGTPVDIKMIPRYPPYRPDFMAPGPRVRVAESIEVLDNGDEYIW 990
Query: 617 -------------------CYESQRVIGKLYRAVK----------DIAPPTATIKSFTKE 647
Y+S+RV+G LYR + D KS
Sbjct: 991 NNDSESVIDDDDDVRPPMRYYKSRRVLGALYRMINERDFVNGLEWDSLNRQTQTKSVNVL 1050
Query: 648 VAMQSYDTDMEVDGF--EDYITDAFKYKTEYDNRLGNLMDYYGIK------TEAEILSGC 699
++ Y + E GF + + DA + Y++ + +LM Y TE E+ G
Sbjct: 1051 ASVWEY-VERETAGFLWDHCVKDAHYIRDVYEDSIQDLMYQYSDAPWKSSLTEVEVFIGN 1109
Query: 700 IM 701
IM
Sbjct: 1110 IM 1111
>gi|154290300|ref|XP_001545747.1| hypothetical protein BC1G_15659 [Botryotinia fuckeliana B05.10]
Length = 1080
Score = 286 bits (733), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 215/733 (29%), Positives = 365/733 (49%), Gaps = 110/733 (15%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKL-YSTVLSPLISS 111
+++V +TP+ Y GPE +NR++R Y NF+R++F DED D+L Y++ ++
Sbjct: 288 IHRVTITPAGFYLDGPEPESNNRILRKYAGNHSNFVRVTFCDEDGDRLQYAS------NA 341
Query: 112 TNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPE----LTAAD 167
+N+E + ++ +VL ++G IG +K+E L S+S ++ S W A + A
Sbjct: 342 SNDEIYDGVFRKVL---QDGFSIGKQKYEYLGSSHSSLRTQSCWFVAPFTQNDIYYDALH 398
Query: 168 IRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSS-DIEIIPDVEVEDDGITYCFSDG 226
I + +G F DI++ AK AAR+GQ+F + L +D + +E + D+E FSDG
Sbjct: 399 ITQDLGRFGDIRSPAKCAARIGQAFSDTPNTLTLDETVTVETVADIERNG----RVFSDG 454
Query: 227 IGKISAELAE-IVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYK- 283
+G +S +L E I + + P+ FQIRY G KG++++D +L LR+SM+K++
Sbjct: 455 VGTMSEKLMEKIWDRLPDKYLVKPTCFQIRYRGAKGMISLDSRLPGVQLRLRESMIKFEG 514
Query: 284 SESTSLDILANS-KYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAH 342
S S L+I + K P +LNRQ I +L LG+ F + Q + V++L I A
Sbjct: 515 STSNDLEICGGAYKPLPMYLNRQFIKILEDLGVEPEYFMRLQAKEVSRLREITASAYNAS 574
Query: 343 EALELMSSGENTNVLKELLMCG-----YKPDVEPFLLMMLQTFRASNLLELRT---RTRI 394
L+ G+ + + + C ++ D L + + L+ELRT + RI
Sbjct: 575 TFLQSKRVGDVVLLPQLIEHCSALDLDFRND-----LFLRDILEMTVLIELRTLKHKARI 629
Query: 395 FIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNP 454
++ G + G +DETG LE G+++ +R L V VV+ + P
Sbjct: 630 PVERGYHLHGIMDETGILEEGEIYCCWIEDGKRTTL-------------VGSNVVITRAP 676
Query: 455 CLHPGDMRVLRAVDVPS---LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHEL 511
LHPGD+++ AV+VPS L+ + +CV F KG R ++ SG DLDGD+Y+V +D ++
Sbjct: 677 ALHPGDIQLANAVNVPSDSPLNRLYNCVCFSQKGARDLPSQLSGGDLDGDLYYVIFDEDM 736
Query: 512 IPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKAR 571
P DY+ + + R + ED+ ++F ++ D LGVI N H V+AD +
Sbjct: 737 KLKRTVKPADYSRSLPLDIGRPVKQEDMADFFLTFMKTDQLGVISNRHQVYADQDVMGTE 796
Query: 572 SNQCLELAKLSTIAVDFSKTGVAATI--PSGLRVEIY-PDF------------------- 609
+ CL+LA+L + AVD+SKTG+ + PS R ++ PDF
Sbjct: 797 CSDCLKLAELCSTAVDYSKTGIPPKLNDPSVPRHSLWRPDFMAPGPHVKISHRPDDRLGF 856
Query: 610 ---------MEKQDKTC----YESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTD 656
M+++D+ YES++ G+LYRA+ + + +++ +Q+ D+
Sbjct: 857 AEKYIPIEVMDEEDEVTNIKYYESKKACGQLYRAIDE-----RKVFEDIQKLNVQANDSP 911
Query: 657 MEVDGFEDYI-------------TDAFKYKTEYDNRLGNLMDYYGIK-----TEAEILSG 698
+ +++ DA + + YDN + ++M Y +E E+ G
Sbjct: 912 DVIQHMWEFVKSRSQGIQWQHLRKDALEIQEIYDNNMLDIMHQYSEHPTRPISEREVFVG 971
Query: 699 CIMEMAKSFDKKR 711
I+ S KK+
Sbjct: 972 NILGKVGSVSKKQ 984
>gi|400598650|gb|EJP66359.1| RNA dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 1260
Score = 286 bits (731), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 219/746 (29%), Positives = 361/746 (48%), Gaps = 98/746 (13%)
Query: 26 EEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEID 85
E R +SR+ + P++ +V K +V P++++ GP+ NRV+R +PD D
Sbjct: 418 ETDLRSRDVSRQGVYGPSIPRHQ--TWVFKAMVAPTRIFLQGPDPESRNRVLRMFPDHGD 475
Query: 86 NFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFS 145
FLR++F DED L +P +S+ IYER L GI I ++F L FS
Sbjct: 476 YFLRVTFCDEDGQDLS---FNPRVSND------AIYERYRQVLIKGIRIAGRQFSFLGFS 526
Query: 146 NSQVKDNSMWMFASRPELTAADIRES-------MGDFRDIKNVAKYAARLGQSFGSSREA 198
+S ++ +S W A P + A R+S +GDF DI+ AK AAR+GQ+F + A
Sbjct: 527 HSSLRSHSTWFMA--PFVGADGQRQSRDTILAALGDFSDIRIPAKCAARIGQAFSETPYA 584
Query: 199 LHVDSSDIEI--IPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRY 256
+ + S I + IPDV+ D FSDG+G +S E K T + FQIR+
Sbjct: 585 VDLFKSGIGVRWIPDVKSADG--ERVFSDGVGTLSRAAVEEFCKALPGRSTTATCFQIRW 642
Query: 257 GGYKGVVAVDPTSSTK-LSLRK-SMLKYKSESTSLDILANSKYQPC--FLNRQLITLLST 312
G KG++ +D K + +RK SM+K+ S+ + + +P LNRQ+I +L
Sbjct: 643 AGVKGLLVLDTRLQGKVICVRKESMMKFPSQDLQELGICDLASRPLRLVLNRQVIKILED 702
Query: 313 LGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGEN---TNVLKEL--LMCGYKP 367
+G RD F Q + + L A+ L L+ G ++ +K+L + Y+
Sbjct: 703 MGTRDSWFLALQHDALEFLRAVTATALNTSTFLQYQDIGSAIGLSSFIKQLDKMDIDYRR 762
Query: 368 DVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRR 427
D FL +++ L L+ + RI + G + G +DETG L+ QV+V A+R +
Sbjct: 763 DA--FLKSVVEHVVLRELRLLKHKARIPVHKGVTLFGVMDETGFLQENQVYVTYDATRGK 820
Query: 428 --EFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLH---HMVDCVVFP 482
E LD + + +G ++V ++P LHPGD++ ++ V P H + +C+VF
Sbjct: 821 SGERLDTT---------LTDGPIIVTRSPALHPGDIQYVQMVTPPESHPLRSLRNCIVFS 871
Query: 483 AKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEY 542
KG R ++ SG DLDGD+Y + WD P F P DYT L R +T +D+ ++
Sbjct: 872 QKGSRDLPSQLSGGDLDGDLYNIIWDPRARPQWTFAPADYTRVVPPSLDRPVTRQDIADF 931
Query: 543 FADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAAT---IPS 599
F D++ +D LG+I H + AD++ + +C+ LA++ + AVD+SKTG+A +P
Sbjct: 932 FVDFMKSDILGLIAIRHQIMADVQDLGTQDGECIRLAEMHSTAVDYSKTGIAVNWRDLPR 991
Query: 600 GLRVEIYPDFM------------------EKQDKTC----------YESQRVIGKLYRAV 631
R PDF+ E+ D + S++++G+LYR +
Sbjct: 992 APRSR--PDFLAPAPPLHLYDLGQIGHIAEEDDDDGNDMALAKPRYHRSEKILGRLYREI 1049
Query: 632 -------KDIAPPTAT--IKSFTKEVAMQSYDTDMEVDG--FEDYITDAFKYKTEYDNRL 680
+DI P T + + + Y+ + G + + A+ +T Y++ +
Sbjct: 1050 DEGKIWSEDIHRPIPTDGPSVWVQLLGRVQYELNSWNIGTDYARHYEQAWNIRTLYEDAI 1109
Query: 681 GNLMDYYGIK-----TEAEILSGCIM 701
M ++ +EAE+ G I+
Sbjct: 1110 TGSMWHFSDNPRSPVSEAEVFCGSIL 1135
>gi|241244478|ref|XP_002402311.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
gi|215496312|gb|EEC05952.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
Length = 519
Score = 285 bits (730), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 189/542 (34%), Positives = 280/542 (51%), Gaps = 41/542 (7%)
Query: 168 IRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGIT---YCFS 224
IR+ MG F I NVAK AR+GQ F S+ +A+ V ++ ++PD+E ++ Y FS
Sbjct: 1 IRDWMGRFDGIPNVAKRMARMGQCFSSTEQAVLVRKHEVRMVPDMEGGAHPVSRKPYVFS 60
Query: 225 DGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK--LSLRKSMLKY 282
DG+G +S LA+ V K PSA QIRY G KG++ ++P + L LR SM K+
Sbjct: 61 DGVGMMSVPLAQEVYKVMKLK-ERPSAIQIRYAGAKGMLCINPELPNQKLLYLRPSMQKF 119
Query: 283 KSESTS-LDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKA 341
S+ L+++ S R+L T L + D Q G L+ + +K
Sbjct: 120 PCTSSDYLEVVKVSA------PRKLHTPLGRVHYLDSDRTIHQVSGEYHLEELGLGCIKD 173
Query: 342 HEALELMSSGENTNVLKELLM---CGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQN 398
+ M S + K + C + ++ A+ L +TR + +
Sbjct: 174 DAIMSRMVSTAMAVLTKPRYIISSCDIMVSCSCTMFNLVVVLHAAGL-RYKTRIALPVDR 232
Query: 399 GRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHP 458
R M+G +D TG L GQVFVQCS R R V+ G+V+V K PCLHP
Sbjct: 233 ARNMLGVVDTTGVLRYGQVFVQCSEMGARASQQGPPKCR-----VITGQVLVTKCPCLHP 287
Query: 459 GDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFP 518
GD+R A+D P LHH+VDC+VFP +G RPH +E +GSDLDGD Y V W+ P L FP
Sbjct: 288 GDVRKFTAIDEPRLHHVVDCIVFPGQGHRPHPDEMAGSDLDGDEYIVIWE----PSLLFP 343
Query: 519 -----PMDYT---PAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKA 570
PM+++ P PE+ ++TI D+ ++ +YI NDS+G++ NAH+ AD E +
Sbjct: 344 GYNKQPMNFSDRNPEPER---GEITINDMIQFLCNYIKNDSIGILSNAHLAWADQEEEGI 400
Query: 571 RSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEK-QDKTCYESQRVIGKLYR 629
S +CL +A+ +I +DF+K+G A + R YPDFMEK K Y S RV+G LYR
Sbjct: 401 YSRRCLAIAEKISICLDFAKSGRTAYLRREERPMFYPDFMEKGSHKISYRSDRVLGLLYR 460
Query: 630 AVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGI 689
+ + A + S ++V G++ Y + A +Y+ RL +++ YGI
Sbjct: 461 TCRSL---EAAVGSLGHRHVDAGRCLALDVPGWQRYESAALAALADYNTRLRRILNQYGI 517
Query: 690 KT 691
+
Sbjct: 518 AS 519
>gi|134114255|ref|XP_774375.1| hypothetical protein CNBG3560 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257010|gb|EAL19728.1| hypothetical protein CNBG3560 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1123
Score = 285 bits (728), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 246/794 (30%), Positives = 379/794 (47%), Gaps = 110/794 (13%)
Query: 50 LIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLI 109
L+ + VLVTP+++ P+ SN V R Y D++D +R+ F DE+ D+L+ LI
Sbjct: 367 LVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEE-DRLFIADNMKLI 425
Query: 110 SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIR 169
S N I RV L+ G++IG + F +A S SQ K+++MW F + + ++R
Sbjct: 426 DSINPA--VGIMARVRRALQFGLIIGGETFYPVASSASQQKEHAMW-FINNKVIDGLELR 482
Query: 170 ESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGK 229
MG + VAK+AAR+G F +SR +++ + E +PD+E CF+DG G
Sbjct: 483 NWMGTVHETV-VAKHAARMGLPFSTSR-IVNMKINIGEELPDIERNG----RCFTDGCGI 536
Query: 230 ISAELAE--IVAKNCGFTIYT-PSAFQIRYGGYKGVVA--VDPTSSTKLSLRKSMLKYKS 284
E+ +A N I + PSA Q R GG KGV++ + ++ LR SM+K+KS
Sbjct: 537 AGREVLNQAALALNEKVGINSQPSAIQFRLGGAKGVLSDWSQLVNEYEIRLRPSMIKFKS 596
Query: 285 ESTSLDILANSKYQPCFLNRQLITLLSTLGI-------------------RDHVFEKKQR 325
+ L+++ +KYQ FLNRQ I ++ G+ +D V+
Sbjct: 597 DLADLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFKDRVWNNAVT 656
Query: 326 EGVAQLDAILTD-PLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASN 384
E QL A+ D PL +L+ SG N N P LL +
Sbjct: 657 ENDQQLIALCNDFPLA-----QLIKSGFNEN---------------PLLLDVAAIIECRA 696
Query: 385 LLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVV 444
L +L+ R R+ + +G ++G DETGTL+ G+VF Q N +V
Sbjct: 697 LQDLKWRARVKLLDGVYLIGIADETGTLKEGEVFCQFQ------------ENDESPPKIV 744
Query: 445 EGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYF 504
+V+V + P LHPGD+R AVD P L H+ + +VF +G R + G DLDGD Y
Sbjct: 745 VNEVLVCRAPALHPGDVRRAWAVDNPELRHLKNVIVFSTQGMRDMPSMLGGGDLDGDDYT 804
Query: 505 VCWDHELIPPLQ-FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHA 563
+ WD + L+ + PMDY AP+ + + +T + + E F YI+ND LG + N H+ +
Sbjct: 805 LIWDQRFVQSLKVYDPMDYE-APDPISVKHVTQKHLNENFVQYILNDVLGQVDNCHLALS 863
Query: 564 DL-EPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQD-KTCYESQ 621
D+ P R CL L+++ + AVDF+KTG AA + LR + +PDFM+K D K YES
Sbjct: 864 DMYTPFDPR---CLHLSEIHSTAVDFAKTGQAAALDPSLRPKEWPDFMDKDDVKVVYEST 920
Query: 622 RVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGF--EDYITDAFK-YKTEYDN 678
++GK++R V+ A ++ Y TD + F + + D K K Y+
Sbjct: 921 GILGKIFRIVQ------ADAHFSPSDLEQMGYPTDPRITRFPLHESLLDRLKPLKASYER 974
Query: 679 RLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDL-------EAIIFAVKSLKKEARAWF 731
L M Y + E EI SG + K + RD EA V ++++ A+
Sbjct: 975 DLQYDMRRYRV-YEPEIPSGIAIR-NKRRKRVRDQNLNEPLREAYNLLVNNVRETAQKIV 1032
Query: 732 NKKNESDSSHEDVYAKASAWYHVAY---HPSYW------GRYKE--------EGMNRTHF 774
N E ++ + A Y + Y H W G++ E E +
Sbjct: 1033 N-DFEFKTTLTPMQVVARHCYALTYEEVHVRQWEQALAEGKFGEKPEDDEDSERLRPKPL 1091
Query: 775 LSFPWCIHDKLIEI 788
+SF WC +L++I
Sbjct: 1092 ISFAWCFCQELVQI 1105
>gi|389747663|gb|EIM88841.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 890
Score = 285 bits (728), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 191/571 (33%), Positives = 301/571 (52%), Gaps = 43/571 (7%)
Query: 51 IYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLIS 110
+ + + LV P+++ P++ SN ++R++ D D FLR+ F+ E+ D + + +
Sbjct: 345 MMIRRCLVAPTRLILMPPQMETSNNLLRTFKDHADRFLRVQFIQEESDLTVTRETNEIDD 404
Query: 111 STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRE 170
+ R ++ RV TL+ GI + +K+ L F SQ+K WM A + + I +
Sbjct: 405 ALQGGR--GLFARVRRTLKYGIHVAGRKYVFLCFGESQLKSKGCWMIAEKEGFSVQGILK 462
Query: 171 SMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVED-DGITYCFSDGIGK 229
MGD + +AK+AAR G +SR A+ +D +E I D+ D G Y F+DG+G
Sbjct: 463 WMGDLDKERVIAKHAARQGLCLSTSR-AIPLDLQ-VEFIHDITRTDSQGKEYVFTDGMGD 520
Query: 230 ISAELAEIVAKNCGFTIYTPSAFQIRYG-GYKGVVAV--DPT---SSTKLSLRKSMLKYK 283
S E+A + A+ G SA Q+RYG G KGV++V DP + L +R SM+K+K
Sbjct: 521 CSQEVANVCARFMGIEGDV-SAVQVRYGTGIKGVISVSEDPLMRGNPYTLRVRDSMVKFK 579
Query: 284 SESTSLDILANSKYQPCFLNRQLITLLSTLGIR-DHVFE--KKQREGVAQLDAILTDPLK 340
S + L+ L + Y P LNRQ+I L+ +LG+ D + + K ++ + L+A
Sbjct: 580 SSNPGLNALKVATYSPATLNRQVILLMESLGVSPDTLLDIFKTEKTKIQGLEASF----- 634
Query: 341 AHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGR 400
E L S+ L++ L G+K D P + +++ + L +L+ + I I
Sbjct: 635 GQERLSRASAFP----LEKALDSGFKDD--PLVASIVRLVKCRLLSDLKWKAWIEIPKSA 688
Query: 401 AMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGD 460
+MG +D TGTL+ G++F Q NS + VV G +NPCLHPGD
Sbjct: 689 FLMGVVDPTGTLQEGEIFCQIQPP-------NSSPS------VVVGDCTAYRNPCLHPGD 735
Query: 461 MRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPM 520
+R ++AVD S+ H+ + +VF G RP N G D+DGD + + WD ++ PM
Sbjct: 736 VRSVKAVDYMSMRHLRNVIVFSTLGHRPLPNMMGGGDVDGDFFSLIWDDRFRLGSEYEPM 795
Query: 521 DYT-PAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELA 579
DYT P P K + +T++ +++F D+I ND LG +CN H+ AD + CL+LA
Sbjct: 796 DYTGPTPVKSIL-PVTVDQTKKFFVDFIRNDLLGAVCNTHMALADEH--GPYHDDCLKLA 852
Query: 580 KLSTIAVDFSKTGVAATIPSGLRVEIYPDFM 610
L++ AVDF KTGV + +V+ YPDFM
Sbjct: 853 ALASQAVDFVKTGVPVSHNDIPKVDEYPDFM 883
>gi|169625035|ref|XP_001805922.1| hypothetical protein SNOG_15784 [Phaeosphaeria nodorum SN15]
gi|160705585|gb|EAT76879.2| hypothetical protein SNOG_15784 [Phaeosphaeria nodorum SN15]
Length = 1234
Score = 284 bits (727), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 220/748 (29%), Positives = 365/748 (48%), Gaps = 103/748 (13%)
Query: 35 SRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVD 94
+ ++ S D ++ +K +TP+ ++ GP+ SNR++R Y D F+R+SF D
Sbjct: 416 TEHYVASNKRGQQDHVVLTHKATITPTGIFLRGPDADTSNRILRKYSQYTDYFMRVSFTD 475
Query: 95 EDLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSM 154
ED +V +S +E +YER LR GI + + FE L FS++ ++ + +
Sbjct: 476 ED----GVSVFHDPKASQHE-----VYERFRKILREGIHVAGRHFEFLGFSHASLRCHQV 526
Query: 155 WMFAS----RPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSD--IEI 208
W AS + A D+ +++GDF A+ AAR+GQ+F + A+ + S+ +E
Sbjct: 527 WFMASFIFKGLPICARDVIQNLGDFNGFTCSARCAARIGQAFSDTIFAVQIPSTATILET 586
Query: 209 IPDVEVEDDGITYCFSDGIGKISAELAEIVAK--NCGFTIYTPSAFQIRYGGYKGVVAVD 266
D+ + FSDG G +S EL +++ + N P+ QIR G KGV+++D
Sbjct: 587 KEDITRNN----RVFSDGCGTMSLELFQLLWRKLNPQQRRKRPTVLQIRCRGAKGVLSLD 642
Query: 267 PT-SSTKLSLRKSMLKYKSESTSLDI-LANSKYQP--CFLNRQLITLLSTLGIRDHVFEK 322
+ +L +RKSM K+ + S D+ + ++ Y+P +LN Q I +L LG+ F K
Sbjct: 643 SSLVGEELHIRKSMTKFIAGSEWRDLEICSAAYRPLRVYLNHQFIKILEDLGVPPQNFIK 702
Query: 323 KQREGVAQLDAILTDPLKAHEALELMSSGENTNV-----------LKELL-MCGYKPDVE 370
Q E QL+ I+ PL A + L + T L EL+ G +
Sbjct: 703 VQNEARKQLELIVKHPLNAADFLRKHKTNIRTGYSHSADHAKIPRLFELMHYAGLSFQTD 762
Query: 371 PFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFL 430
FL +++ S++ +L+ R RI +++G + G +DET TL+ G+V+V
Sbjct: 763 QFLCEIVEVAAMSSIRDLKYRARIPVESGHLLYGIMDETNTLKEGEVYVATE-------- 814
Query: 431 DNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS---LHHMVDCVVFPAKGKR 487
D + + R + ++ +VVV + P LHPGD++++ AV+VP L + +C+VF +G R
Sbjct: 815 DETPSGRREKNILIGDRVVVTRAPALHPGDVQLVSAVNVPDGSPLRSLHNCIVFSQQGAR 874
Query: 488 PHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYI 547
++ SG DLDGD++ V WD LIP P DY A L R + + D+ ++F ++
Sbjct: 875 DLPSQLSGGDLDGDLFHVIWDPLLIPKYTVPAADYAAAAPFNLGRPVEVNDIVDFFIGFM 934
Query: 548 VNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAAT---IPSGLRVE 604
ND LG I N H + AD + + C+ LAKL++ AVDFSK+GV A IP + +
Sbjct: 935 QNDKLGQISNMHKIRADKRENGTFDSDCILLAKLASDAVDFSKSGVPAKTSDIPRDIDI- 993
Query: 605 IYPDFM--------------EKQDKTC---------------------YESQRVIGKLYR 629
I PDFM E QD Y S++ +G LYR
Sbjct: 994 IRPDFMAPGHNFVINDLGSTELQDLEIEDIEDPDSLSILDHDMSRVRYYRSKKALGHLYR 1053
Query: 630 AVKD------IAPPTATIKSFTKEVAM-----QSYDTDMEVDGFEDYITDAFKYKTEYDN 678
A+ + + A ++S T +++ Q D + + + + T A + + Y+
Sbjct: 1054 AIDEREFFDHMKSDFAAMQSSTPGLSLMQKLEQYIDRETHLVQWAHHTTFAEELREYYEF 1113
Query: 679 RLGNLMDYYGIK-----TEAEILSGCIM 701
+ ++MD + TE E+ SG I+
Sbjct: 1114 NMIDIMDTMRVHRRSPLTELEVFSGNIL 1141
>gi|310795671|gb|EFQ31132.1| RNA dependent RNA polymerase [Glomerella graminicola M1.001]
Length = 1313
Score = 284 bits (726), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 199/658 (30%), Positives = 327/658 (49%), Gaps = 69/658 (10%)
Query: 25 LEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEI 84
+E++ R + R+ PA A + + V K +VTP+++ GPE NRV+R +PD
Sbjct: 416 VEKRLRSEHVYRKDALGPATA--NHHVQVFKAMVTPTRITLHGPEPEPLNRVLRRFPDHT 473
Query: 85 DNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAF 144
F+R++F DED L+ +P +S + I++R L GI I + ++ L F
Sbjct: 474 SYFMRVTFCDEDGGDLF---FNPRVS------YDQIFDRYRKVLNGGIPIAGRVYQFLGF 524
Query: 145 SNSQVKDNSMWMFASRPELTA-----ADIRESMGDFRDIKNVAKYAARLGQSFGSSREAL 199
S+S ++ +S W A + T A+I +S+GDF I+ AK AAR+GQ+F + +
Sbjct: 525 SHSSLRSHSAWFSAPFVDSTGKLQLYANIIKSLGDFDHIQIPAKCAARIGQAFSETPAFI 584
Query: 200 HVDSSDIEI--IPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYG 257
++ I IPDV+ D I FSDG+G IS E E+V P+ QIR+G
Sbjct: 585 NLSEHRIRHWDIPDVKSHDGKIQRVFSDGVGTISQEAIELVWPRLPQRSLIPTCLQIRWG 644
Query: 258 GYKGVVAVDPTSSTK--LSLRKSMLKYKS-ESTSLDIL-ANSKYQPCFLNRQLITLLSTL 313
G KG+++++ S + R+SM K+ S + +L+I A SK LNRQ+I ++ L
Sbjct: 645 GVKGMLSLESRLSGRSICIRRESMEKFPSTDVQNLEICDAASKPLKLVLNRQMIKIMEDL 704
Query: 314 GIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGEN---TNVLKELLMCGYKPDVE 370
G+ + F + Q+ + +L A+ D L L G +K L G +
Sbjct: 705 GVDKNFFLRLQKNELDRLRAVTADAYNTGTFLHLQGVGSAFFLPTFIKSLEKYGIDYRRD 764
Query: 371 PFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFL 430
FL ++++ L L+ + RI + G + G +DETG L+ G+V+V C + +
Sbjct: 765 DFLRAVVESTVLRELRLLKHKARIPVPQGATLFGVMDETGFLKEGEVYV-CYDTYK---- 819
Query: 431 DNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLH---HMVDCVVFPAKGKR 487
S E + +G+V+V ++P LHPGD+++ P H ++ +CV F G+R
Sbjct: 820 --SPGKAPTERSLRDGRVLVTRSPALHPGDIQLANMRTPPPGHPLRNLRNCVAFSQHGQR 877
Query: 488 PHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYI 547
++ SG DLDGD+Y + WD + +P DY + L R +T +D+ +F D++
Sbjct: 878 DLPSQLSGGDLDGDLYNIIWDKQAMPRWICKAADYPRVTPEPLGRPVTRDDMANWFVDFM 937
Query: 548 VNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAAT---IPSGLRVE 604
+D LG+I H++ +D + + CL+LA+L + AVDFSKTG+A IP R
Sbjct: 938 KSDVLGLIATRHLILSDQDQEGTMGRNCLKLAELHSTAVDFSKTGIAVEQREIPKAPRFR 997
Query: 605 IYPDFM-----------------------------EKQDKTCYESQRVIGKLYRAVKD 633
PDF+ + + Y+S+ ++G+LYR V +
Sbjct: 998 --PDFLAPAPPAQLYDRTHIDFIDEDEAVDDDEDAQGPNHKYYKSENILGQLYRNVNE 1053
>gi|240276859|gb|EER40370.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H143]
Length = 1240
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 226/743 (30%), Positives = 351/743 (47%), Gaps = 123/743 (16%)
Query: 51 IYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKL-YSTVLSPLI 109
I +++ +TP Y GP NRV+R Y +D+FLR+ FVDE D + Y S I
Sbjct: 419 ISIHRAQITPCGTYLDGPHAETKNRVLRHYSSHVDHFLRVEFVDETGDPVRYDPRAS--I 476
Query: 110 SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA----SRPELTA 165
E R T+ L++GI I +KFE L FS+S ++ + W A R A
Sbjct: 477 DMIFESRFKTV-------LKSGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYKDRILYNA 529
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSD 225
+ I +++G F I++ AK AAR+GQ+F + ++ + I I DVE FSD
Sbjct: 530 STIIQNLGRFDHIQSPAKQAARIGQTFSDTLTSIPISDKYISIGKDVERNG----RVFSD 585
Query: 226 GIGKISAELAEIVAKNCGF-TIYTPSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYK 283
G+G IS + ++ K+ T+ P+ FQIR G KG++++D K L LR SM+K+
Sbjct: 586 GVGTISPSVMYMIWKDHSLRTVVKPTVFQIRLAGAKGMISLDSRKKGKSLVLRPSMIKFH 645
Query: 284 SEST----SLDILANS-KYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDP 338
++ +++I + K P FLN QLI +L LG+ D VF + Q + +++L A T
Sbjct: 646 LPNSYNAFNIEICGSGLKPLPFFLNAQLIKILEDLGVDDSVFLRLQADEISRLRATATST 705
Query: 339 LKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTF--RASN------------ 384
KA LE +TN+ K + + P+L+ +L+ F R SN
Sbjct: 706 AKAARFLE------DTNIAKSVGL--------PWLINILEGFGLRHSNDEFLRRVMELAV 751
Query: 385 ---LLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGEL 441
L +L+ R RI + N + G +DETG L+ G+VF C+ S +++
Sbjct: 752 LIKLRDLKYRARIRVPNAVTLFGIMDETGILKEGEVF--CT----------SLSDKGVRE 799
Query: 442 GVVEGKVVVAKNPCLHPGDMRVLRAVDVPS---LHHMVDCVVFPAKGKRPHTNECSGSDL 498
+V +VVV ++P +HPGD+++ RAVDVP+ L + +C+ F G R + SG DL
Sbjct: 800 VLVNPRVVVTRSPAMHPGDVQIARAVDVPADSPLRQLHNCIAFSQHGHRDLPSMLSGGDL 859
Query: 499 DGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNA 558
DGD+Y V +D+ L+P P +Y EKVL R + ED+ ++F ++ D LG I
Sbjct: 860 DGDLYNVIFDNTLLPKRIARPAEYPRVQEKVLGRAVVREDIIDFFVTFMQQDQLGRIATI 919
Query: 559 HVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVA---ATIPSGLRVEIYPDFMEKQDK 615
H AD P +CL LA+L + AVDFSKTGV A IP PDF +
Sbjct: 920 HQALADRRPLGTFDPECLLLAELHSTAVDFSKTGVPVDLARIPKFPSCR--PDFQAPSPR 977
Query: 616 T-------------------------------CYESQRVIGKLYRAVKDIAPPTATIKSF 644
Y+S+ ++GKLYR++ ++ +
Sbjct: 978 IRIAENLSLLEGDMDAVQDGGDEDDDERPAVRFYKSENILGKLYRSIDEVKFLQHRQSAM 1037
Query: 645 TKEVAMQSYD--------TDMEVDGF--EDYITDAFKYKTEYDNRLGNLMDYYGIK---- 690
AM + E +GF + +I A + Y++ L +M Y
Sbjct: 1038 ELPSAMGAPSVLQGVWEFVQREAEGFLWDHHIEHALDIRQIYEDNLLEIMARYSSTPWKS 1097
Query: 691 --TEAEILSGCIMEMAKSFDKKR 711
TE E+ G I+ + +++
Sbjct: 1098 SITEYEVFVGTILGHGQKLSQRQ 1120
>gi|345563096|gb|EGX46100.1| hypothetical protein AOL_s00110g264 [Arthrobotrys oligospora ATCC
24927]
Length = 1279
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 198/620 (31%), Positives = 315/620 (50%), Gaps = 52/620 (8%)
Query: 20 EPVRWLEEQYRKYVL--------SRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEIS 71
+P WL E +K L S+ ++ + + ++++ +TP+ ++ GP +
Sbjct: 422 DPQIWLSENIQKDFLEALETKQKSQEYMVRMKFYRKENQVLIHRMSITPTGMFPGGPNLE 481
Query: 72 LSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYE-RVLSTL-- 128
NRV+R Y D +++FLR+S V+ED L S + ++ IY+ R L L
Sbjct: 482 PKNRVLREYHDYLNHFLRVSLVEEDGGDLR-------FESGVDGKY--IYDGRFLPFLMP 532
Query: 129 -RNGIVIGDKKFETLAFSNSQVKDNSMWMFAS----RPELTAADIRESMGDFRDIKNVAK 183
N + I + F+ L FS S ++ ++ W A+ R +T + E +GDF+ IK K
Sbjct: 533 ESNLLKIAGRTFKFLGFSQSSLRSHTAWFMATISTPRRTITVDGVIERLGDFKSIKIPGK 592
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDV-EVEDDGITYCFSDGIGKISAELAEIVAKNC 242
AAR+GQ+F + + +D I D+ ++ G Y FSDG G +S L E++ K
Sbjct: 593 CAARIGQAFTDTVANIKIDDFMIAQKRDIIKIAPGGKKYTFSDGCGTVSKPLIELIWKKG 652
Query: 243 GFTI-YTPSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSESTSLDILANS--KYQ 298
FT P+ FQIR+ G KGVVA+D T L L SM+K+ + + S K
Sbjct: 653 EFTSDPKPTVFQIRFRGAKGVVALDSTQRDPILCLYDSMVKFDGLKNKVFEICRSFTKPL 712
Query: 299 PCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNV-- 356
P +LNR +I +L G+ F Q +A L P A L+ + N+
Sbjct: 713 PFYLNRCIIKILEDRGVPIKNFMDLQGRALATLRERTFTPDSAAHFLDYQNRCTQANIPF 772
Query: 357 -LKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESG 415
++EL G+ + FL +++ + L +++ R RI + G ++G LDETG L+ G
Sbjct: 773 LIRELFALGWDYKEDNFLRKVVEFTMLTTLRDMKYRARIQVDKGFTLVGVLDETGYLQEG 832
Query: 416 QVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVP---SL 472
+++ C R G+ G V + +NP LHPGD++++ AV+VP L
Sbjct: 833 EIY--CPIQRE-----------GGKREAHRGVVAICRNPALHPGDIQIVTAVEVPYDSPL 879
Query: 473 HHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKV-LA 531
+++CVVF +G+R + SG DLDGD++ + W+ L+P P D+ PA E +
Sbjct: 880 RDLMNCVVFSQRGQRDLPSMLSGGDLDGDIFHIWWEPSLMPRFSSAPSDF-PAVEALNYD 938
Query: 532 RDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKT 591
RD+T D+ ++F D++ ND LGVI AH+V AD EP RS CL A++++ AVDF KT
Sbjct: 939 RDVTQADIGKFFLDFMENDKLGVISVAHMVLADQEPAGVRSAACLTCARMASQAVDFPKT 998
Query: 592 GVAATIPSGLRV-EIYPDFM 610
GV + R + PDF+
Sbjct: 999 GVPVRMSELPRTPKARPDFL 1018
>gi|402078468|gb|EJT73733.1| RNA-dependent RNA polymerase [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1287
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 197/636 (30%), Positives = 315/636 (49%), Gaps = 74/636 (11%)
Query: 50 LIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLI 109
L + + +VTP+++ GPE+ NRV+R +P D FLR+ F DE L
Sbjct: 440 LTNIFRAVVTPTRITLHGPEVETKNRVLRKHPGHQDYFLRVQFCDEGSRDLR------FE 493
Query: 110 SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFAS-RPELTAA-- 166
+ + ER +Y+R L +GI + + + L FS+S ++ +S+W A+ R + T
Sbjct: 494 TGVSVER---VYQRFKDVLLSGIRLPGRIYNFLGFSHSSLRTSSVWFCAAFRDKETGKLV 550
Query: 167 ---DIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDS-SDIEI--IPDVEVEDDGIT 220
I E +G+F I+ AK AAR+GQ+F + + + SDI I +PD+ D
Sbjct: 551 NHKSIIEGLGEFGHIRCPAKLAARIGQAFSETPSVVPLSGYSDILIKHVPDIYSADG--R 608
Query: 221 YCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKL-SLRKSM 279
CFSDG+G +S E+ I+ + P+ FQIR+ G KG++A+D T S K+ R SM
Sbjct: 609 RCFSDGVGSVSEEMMRIIWAHVPMKKNAPTCFQIRHAGCKGMLALDTTLSGKIIYFRDSM 668
Query: 280 LKYKS-ESTSLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTD 337
K+ S + L+I SK P LNRQ+I +L +G F K Q + +L A+ +
Sbjct: 669 KKFDSIDQEDLEICDTGSKAIPLVLNRQMIKILEDMGADHKWFLKLQSYRLKELQAVTAN 728
Query: 338 PLKAHEALELMSSGENTNVLK-----ELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRT 392
L + G+ ++ K L YK D PFL +++ L L+ +
Sbjct: 729 AYNVQTFLHTANVGQPISLGKFIYWAHLNGMDYKKD--PFLRGVVEALVLQELRLLKHKA 786
Query: 393 RIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAK 452
RI + G+ + G +DETG L GQV+V ++ + F +++S V+V +
Sbjct: 787 RIPVSKGKTLFGLIDETGLLREGQVYVTFASEKIPGFQKPPRHSQS---------VIVTR 837
Query: 453 NPCLHPGDMRVLRAVDVPSLHHMV---DCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDH 509
+P LHPGD++++ + P H + + + F G R + SG DLDGD+Y + WD
Sbjct: 838 SPALHPGDIQIVTNIIPPPDHPLAAHRNSIFFSRHGSRDLPSMLSGGDLDGDIYNIIWDK 897
Query: 510 ELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDK 569
E++P +F P DY+ AP + + R + ED+ ++F D++ ND+LG I H++ AD +
Sbjct: 898 EVLPKQRFHPADYSNAPPQDIGRPVEREDIVQHFVDFMKNDNLGAIATRHMILADQMVEG 957
Query: 570 ARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIY-PDFMEK------QDK------- 615
C +LA+L + AVDFSKTG+ + R + PDF+ DK
Sbjct: 958 TLHPDCQKLAELHSTAVDFSKTGIPVDMKELPRTNRFRPDFLSPGPIANLHDKDEILMEQ 1017
Query: 616 ------------------TCYESQRVIGKLYRAVKD 633
Y+S +++GKLYR V +
Sbjct: 1018 YRAPDPEEELEHGEPPRFKYYKSGKILGKLYREVDE 1053
>gi|225678504|gb|EEH16788.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 1262
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 236/785 (30%), Positives = 356/785 (45%), Gaps = 148/785 (18%)
Query: 33 VLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSF 92
VL R L+ + I +++ VTP +Y GP++ NRV+R Y +D+FLR+ F
Sbjct: 398 VLRERALSRSNRQIHLNNILIHRAQVTPCGIYLYGPQLETKNRVLRIYEANVDHFLRVEF 457
Query: 93 VDEDLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDN 152
VDE D P+ + R L+ GI I +KFE L FS+S ++
Sbjct: 458 VDESGD--------PIRYDSRASVDAIFQSRFKGVLKEGITIAGRKFEFLGFSHSSLRSQ 509
Query: 153 SMWM---FASRPEL-TAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI 208
+ W F S L A I +++G F I + AK AAR+GQ+F + ++ + + +
Sbjct: 510 TCWFVAPFVSGGTLYNATVIIQNLGRFDHIHSPAKQAARIGQTFSDTLTSIPISFDMLSV 569
Query: 209 IPDVEVEDDGITYCFSDGIGKISAELA-EIVAKNCGFTIYTPSAFQIR------------ 255
DVE FSDG+G IS L EI + P+ FQIR
Sbjct: 570 GEDVERNGR----VFSDGVGTISPSLMYEIWKDHSLRAKVKPTVFQIRVAAPEPLLAGFH 625
Query: 256 -----------YGGYKGVVAVDPTSSTK-LSLRKSMLKYKSEST--SLDI-LANS--KYQ 298
+ G KG++A+D T + K L LRKSM+K+ T L+I L S K
Sbjct: 626 AYRGILLTETWFIGAKGMIALDSTKTGKSLMLRKSMVKFPVPETVGGLNIELCGSGLKAL 685
Query: 299 PCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLK 358
P FLN QLI +L LG+ F K Q + + +L A T P A A L E+T++ K
Sbjct: 686 PFFLNAQLIKILEDLGVEQSAFLKLQADEIERLRA--TAPSTAQAARFL----EDTHIAK 739
Query: 359 ELLMCGYKPDVEPFLLMMLQTFRASN-----------------LLELRTRTRIFIQNGRA 401
+ + P+L+ +L+ FR S+ L +L+ R RI + N
Sbjct: 740 SIGL--------PWLISILEGFRLSHTNDEFLRRVMELAVLIKLRDLKYRARIRVPNAVT 791
Query: 402 MMGCLDETGTLESGQVF-VQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGD 460
+ G +DETG L+ G++F V S RE L V +VVV ++P +HPGD
Sbjct: 792 LFGIMDETGILKEGEIFCVTLSEDGHREVL-------------VRPRVVVTRSPAMHPGD 838
Query: 461 MRVLRAVDVPS---LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQF 517
++V RAVDVP+ L + +C+ F G R + SG DLDGD+Y V +D LIP +
Sbjct: 839 VQVARAVDVPADSPLRQLHNCIAFSQYGDRDLPSMLSGGDLDGDLYNVIYDETLIPKITV 898
Query: 518 PPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLE 577
PP +Y EKVL R + +D+ ++F ++ D LG I H AD QCL
Sbjct: 899 PPAEYPRVEEKVLNRPVVTDDIIDFFVTFMQQDQLGRIATIHQAIADQRDRGTFDEQCLL 958
Query: 578 LAKLSTIAVDFSKTGVA---ATIPSGLRVEIYPDFM------------------------ 610
LA+L + AVDFSK+GV A IP R PDF
Sbjct: 959 LAELHSTAVDFSKSGVPVDLARIPKFPRYR--PDFQAHGPRVRIAESLSLHEEDEETTVH 1016
Query: 611 -------EKQDKTCYESQRVIGKLYRAVKDI---------APPTATIKSFTKEVAMQSYD 654
E+ Y+S +++GKLYR++ ++ + + + + + + +Y
Sbjct: 1017 DLDDEDDERPPTRFYKSYKILGKLYRSIDEVDFLHKWQHATQRPSGLAAPSVLMGVWAY- 1075
Query: 655 TDMEVDGF--EDYITDAFKYKTEYDNRLGNLMDYY------GIKTEAEILSGCIMEMAKS 706
E GF + +I +A + Y++ L LM Y +E E+ G I+ +
Sbjct: 1076 VQAETKGFLWDHHIENARYIREIYEDNLWGLMHRYSSTPWKSFISEYEVFVGNILGHGQK 1135
Query: 707 FDKKR 711
+++
Sbjct: 1136 LSQRQ 1140
>gi|342878783|gb|EGU80072.1| hypothetical protein FOXB_09347 [Fusarium oxysporum Fo5176]
Length = 1277
Score = 283 bits (723), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 203/641 (31%), Positives = 311/641 (48%), Gaps = 73/641 (11%)
Query: 43 AVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYS 102
V + D IY+ K +VTP++V SGPE NRV+R Y + D FLR+ F +ED L
Sbjct: 429 GVKIPDHQIYIFKAMVTPTRVLLSGPEPDSKNRVLRKYHENNDYFLRVLFCEEDGQDLN- 487
Query: 103 TVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPE 162
P + NE I+ R + GI I +KF+ L FS+S ++ +S W A +
Sbjct: 488 --FHPKVD--NE----PIFARFRHVMDEGITIAGRKFDFLGFSHSSLRSHSAWFSAPFTD 539
Query: 163 -----LTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDI--EIIPDVEVE 215
T A I +++GDF +I+ AK AAR+GQ+F + A+ + + I IPDV+ E
Sbjct: 540 SNFERQTPAAILQALGDFSEIRVPAKCAARIGQAFSETPYAIPIFETGICHRFIPDVKSE 599
Query: 216 DDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSL 275
D T FSDG+G IS E E + P+ QIR+GG KG++++D T+L
Sbjct: 600 DG--TRVFSDGVGTISREALEEIWPYLSMRAAAPTCLQIRWGGCKGMLSLD----TRLKG 653
Query: 276 R------KSMLKYKSES-TSLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREG 327
R +SM+K+ S+ L I A+SK LNRQ+I +L +G + F + Q
Sbjct: 654 RVFCIRQESMMKFPSDDLRELGICDASSKPLRLVLNRQMIKILEDMGTTNDWFFRLQNNA 713
Query: 328 VAQLDAILTDPLKAHEALELMSSGENTNV---LKELLMCGYKPDVEPFLLMMLQTFRASN 384
+ L D L+ + G N + +K+L G + FL ++
Sbjct: 714 LDILRNATADATNTSYFLDYQAIGVNMGLPKLVKQLEKMGIDYRRDKFLKSAVEHVVFRE 773
Query: 385 LLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVV 444
L L+ + RI + G + G +DETG L++ +VFV + R +
Sbjct: 774 LRLLKHKARIPVDKGVTLFGVMDETGFLDADEVFVTYDKTH------GVYRGRRINSTLK 827
Query: 445 EGKVVVAKNPCLHPGDMRVLRAVDVP---SLHHMVDCVVFPAKGKRPHTNECSGSDLDGD 501
+G+++V ++P LHPGD++++ V P SL + +C+VF KGKR + SG DLDGD
Sbjct: 828 DGQIIVTRSPALHPGDIQIVNQVTPPQGHSLRSLQNCIVFSQKGKRDLPSMLSGGDLDGD 887
Query: 502 VYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVV 561
+Y + WD + +P F P DY K L R + +D+ ++F D++ D LG+I HVV
Sbjct: 888 LYNIIWDPDALPDNYFLPADYPRVKPKPLDRPVKPQDIADFFVDFMRTDILGMIATRHVV 947
Query: 562 HADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIY-PDF----------- 609
AD C+ LA + + AVDFSKTG+ + + + + PDF
Sbjct: 948 LADYHEQGTTHPDCISLAGMHSTAVDFSKTGIPVDVKALPKNPPFRPDFLAAAPPLKTYE 1007
Query: 610 -------------------MEKQDKTCYESQRVIGKLYRAV 631
M + YES +++G+LYR V
Sbjct: 1008 KGQIAHLRDDDEDDNADDGMARYKAKYYESDKILGRLYRNV 1048
>gi|299116728|emb|CBN76286.1| RNA-dependent RNA polymerase 2 [Ectocarpus siliculosus]
Length = 634
Score = 282 bits (722), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 205/664 (30%), Positives = 310/664 (46%), Gaps = 148/664 (22%)
Query: 49 GLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPL 108
G + V + VTP +V PE +SN V R + + D FLR++FVDE++ +L LSPL
Sbjct: 43 GNVMVPRASVTPLRVVCQPPEQEMSNGVTRRFAEHSDRFLRVNFVDENMGRLQ---LSPL 99
Query: 109 ISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAAD- 167
+ R+ +++G+VI +K+E LA+S SQ++ ++ + +A AD
Sbjct: 100 L-----------VPRLEGFMKDGLVIAGRKYEFLAYSGSQLRGHACFFYAEGDGAPTADS 148
Query: 168 IRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGI 227
IR MGD I V K+AARLGQS S+ + V + +++PD + Y F+DG
Sbjct: 149 IRSWMGDMSGIDVVGKHAARLGQSLSSTTSTVEVPPALKKLVPDKKAG----PYEFTDGC 204
Query: 228 GKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSEST 287
G +S LA GG ++ + T
Sbjct: 205 GMMSEGLAR--------------------GG-------------------DVIPFPHAHT 225
Query: 288 SLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAIL----TDPLKAHE 343
+ ++ ++ PC+LNRQ ITLL TLG+ D V E++ V+ LD +L +DP +A
Sbjct: 226 PMQVIQYARQLPCYLNRQFITLLGTLGVPDKVIEERYSAMVSTLDKVLRTMLSDPAEAEM 285
Query: 344 ALEL---MSSGENTNVLK--------ELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRT 392
AL ++SG T + ++ G EPFL +L+ R +++LR RT
Sbjct: 286 ALVRYYNITSGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVLRATRDKAMIDLRHRT 345
Query: 393 RIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAK 452
RIF+ + ++G +DETG L+ GQ S LG
Sbjct: 346 RIFVPDASCLLGIVDETGLLQPGQA--------------------SDSLG---------- 375
Query: 453 NPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI 512
C RA + + C T E SG DLDGD+Y V WD +L+
Sbjct: 376 --CRSVNHYTANRASIMTNADRFGQC-----------TQEMSGGDLDGDLYSVVWDQDLL 422
Query: 513 PP---------------LQFPPMDYTPAPEK------VLARDMTIEDVEEYFADYIVNDS 551
PP FP M Y P PEK + + ++++ ++F YI ND+
Sbjct: 423 PPEREGVAGVQGDSENGFNFPAMGYEP-PEKPKTSASSSGKGVDMKEIADFFLKYIQNDN 481
Query: 552 LGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFME 611
LG I NAH+V ADL P AR ++CL+LA L + AVDF K+GV A P L+V+ YPDFM
Sbjct: 482 LGKIANAHLVRADLSPFGARCDECLQLAALHSKAVDFPKSGVPAVFPDELKVDSYPDFMC 541
Query: 612 KQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVD------GFEDY 665
K+D Y S+++IG+L+R PP ++ + + E+D G+ED+
Sbjct: 542 KEDNMTYLSKKLIGRLFRDT----PPAGAANPQRRQQQDERFLGGFELDQSLLAPGYEDF 597
Query: 666 ITDA 669
+ +A
Sbjct: 598 LEEA 601
>gi|380095764|emb|CCC05810.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1230
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 201/670 (30%), Positives = 338/670 (50%), Gaps = 78/670 (11%)
Query: 22 VRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYP 81
++ LEE ++ L + P + GL + + LVTP+++ GPE+ NR++R +P
Sbjct: 385 IKHLEETEKR--LRESYTLRPNDEIPSGLTKIYRALVTPTRIELHGPELEAMNRILRKFP 442
Query: 82 DEIDNFLRLSFVDEDLDKLY--STVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKF 139
+ D+FLR+ F +ED L+ STV IY+R L GI +G + +
Sbjct: 443 EHQDHFLRVQFGEEDGQDLFFNSTV-----------SMDVIYQRFKDVLTKGISVGGRVY 491
Query: 140 ETLAFSNSQVKDNSMWMFASRPEL------TAADIRESMGDFRDIKNVAKYAARLGQSFG 193
L FS+S ++ +S+W+ A P + + +I E +GDFR+I++ A+ AAR+GQ+F
Sbjct: 492 RFLGFSHSSLRAHSLWLSA--PFIHNGVLRISENIIEGLGDFRNIRSPARRAARIGQAFS 549
Query: 194 SSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQ 253
+ ++ + I +I +V+ FSDG+GKIS E++ + + P+ Q
Sbjct: 550 ETPYSVSLHDHGIAVIRQNDVKRG--KRVFSDGVGKISQGALEVIHREIPASKGYPNCLQ 607
Query: 254 IRYGGYKGVVAVDPT-SSTKLSLRKSMLKYKS-ESTSLDIL-ANSKYQPCFLNRQLITLL 310
+R+ G KG++A+D ++ +R SM K++S + L+I SK P LNRQ+I +L
Sbjct: 608 VRWAGAKGMLALDARLPGRQICIRDSMEKFRSHDEEHLEICDMASKPIPLMLNRQMIKIL 667
Query: 311 STLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVE 370
+G F + Q + + +L AI L+L G++ + L + L +K +++
Sbjct: 668 EDMGAPAKWFVRLQEKELQRLRAITNSVHNVAAFLKLQCVGDSVH-LGQFLKDVHKMNID 726
Query: 371 ----PFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRR 426
FL ++++ L L+ + RI + G + G +DETG L G+V+V
Sbjct: 727 YRKDQFLRGIVESVVLRELRLLKHKARIPVPRGITLFGVMDETGLLREGEVYVTYETVDD 786
Query: 427 REFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLH---HMVDCVVFPA 483
R F D + G VVV ++P LHPGD+++ + V P+ H + +C+VF
Sbjct: 787 R-FKDPPTS----------GSVVVTRSPALHPGDIQIAQNVIPPAGHPLRELKNCIVFSQ 835
Query: 484 KGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ-FPPMDYTPAPEKVLARDMTIEDVEEY 542
G+R ++ SG DLDGD + V WD +++ L+ F DY + L R++ +D+ ++
Sbjct: 836 NGERDLPSQLSGGDLDGDTFNVIWDQKIVSKLETFAAADYPRVTPRELNREIESKDMADF 895
Query: 543 FADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLR 602
F +++ D LGVI H++ AD+ CL+LA+L + AVDFSK+G+ I R
Sbjct: 896 FVEFMKADHLGVIAVRHMILADVRDQGTGDEDCLKLAELHSQAVDFSKSGIHVDITELPR 955
Query: 603 VEIY-PDFM------EKQDKT-----------------------CYESQRVIGKLYRAVK 632
Y PDF+ + DK+ Y S++++GKLYRAV
Sbjct: 956 PPRYRPDFLVNRPDVKIHDKSKIDLEEQYLKPDNDDDDDTPRYKYYASKKLLGKLYRAVD 1015
Query: 633 DIAPPTATIK 642
+ T IK
Sbjct: 1016 ETKIWTRDIK 1025
>gi|225554768|gb|EEH03063.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus G186AR]
Length = 1240
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 224/743 (30%), Positives = 349/743 (46%), Gaps = 123/743 (16%)
Query: 51 IYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKL-YSTVLSPLI 109
+ +++ +TP Y GP NRV+R Y +D+FLR+ FVDE D + Y S I
Sbjct: 419 VSIHRAQITPCGTYLDGPHAETKNRVLRHYSSHVDHFLRVEFVDETGDPVRYDPRAS--I 476
Query: 110 SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA----SRPELTA 165
E R T+ L++GI I +KFE L FS+S ++ + W A R A
Sbjct: 477 DMIFESRFKTV-------LKSGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYKDRILYNA 529
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSD 225
I +++G F I++ AK AAR+GQ+F + ++ + I + DVE FSD
Sbjct: 530 TTIIQNLGRFDHIQSPAKQAARIGQTFSDTLTSIPISEKYISVGKDVERNG----RVFSD 585
Query: 226 GIGKISAELAEIVAKNCGF-TIYTPSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYK 283
G+G IS + ++ K+ T+ P+ FQIR G KG++++D K L LR SM+K+
Sbjct: 586 GVGTISPSVMYMIWKDHSLRTVVKPTVFQIRLAGAKGMISLDSRKKGKSLVLRPSMIKFH 645
Query: 284 SEST----SLDILANS-KYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDP 338
+ +++I + K P FLN QLI +L LG+ D VF + Q + +++L A T
Sbjct: 646 LPHSYNAFNIEICGSGLKPLPFFLNAQLIKILEDLGVDDSVFLRLQADEISRLRATATST 705
Query: 339 LKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTF--RASN------------ 384
KA LE +TN+ K + + P+L+ +L+ F R SN
Sbjct: 706 AKAARFLE------DTNIAKSVGL--------PWLINILEGFGLRHSNDEFLRRVMELAV 751
Query: 385 ---LLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGEL 441
L +L+ R RI + N + G +DETG L+ G+VF C+ S +++
Sbjct: 752 LIKLRDLKYRARIRVPNAVTLFGIMDETGILKEGEVF--CT----------SLSDKGVRE 799
Query: 442 GVVEGKVVVAKNPCLHPGDMRVLRAVDVPS---LHHMVDCVVFPAKGKRPHTNECSGSDL 498
+V +VVV ++P +HPGD+++ RAVDVP+ L + +C+ F G R + SG DL
Sbjct: 800 VLVNPRVVVTRSPAMHPGDVQIARAVDVPADSPLRQLHNCIAFSQHGHRDLPSMLSGGDL 859
Query: 499 DGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNA 558
DGD+Y V +D+ L+P P +Y EKVL R + ED+ ++F ++ D LG I
Sbjct: 860 DGDLYNVIFDNTLLPKRIARPAEYPRVQEKVLGRAVVREDIIDFFVTFMQQDQLGRIATI 919
Query: 559 HVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVA---ATIPSGLRVEIYPDFMEKQDK 615
H AD P +CL LA+L + AVDFSKTGV A IP PDF +
Sbjct: 920 HQALADRRPLGTFDPECLLLAELHSTAVDFSKTGVPVDLARIPKFPSCR--PDFQAPSPR 977
Query: 616 T-------------------------------CYESQRVIGKLYRAVKDIAPPTATIKSF 644
Y+S+ ++GKLYR++ ++ +
Sbjct: 978 IRIAENLSLLEGDMDAVQDGGDEDDDERPAVRFYKSENILGKLYRSIDEVKFLQHRQSAM 1037
Query: 645 TKEVAMQSYD--------TDMEVDGF--EDYITDAFKYKTEYDNRLGNLMDYYGIK---- 690
AM + E +GF + +I A + Y++ L +M Y
Sbjct: 1038 ELPSAMGAPSVLQGVWEFVQREAEGFLWDHHIEHALDIRQIYEDNLLEIMARYSSTPWKS 1097
Query: 691 --TEAEILSGCIMEMAKSFDKKR 711
TE E+ G I+ + +++
Sbjct: 1098 SITEYEVFVGTILGHGQKLSQRQ 1120
>gi|341880675|gb|EGT36610.1| hypothetical protein CAEBREN_29614 [Caenorhabditis brenneri]
Length = 1669
Score = 280 bits (717), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 225/756 (29%), Positives = 353/756 (46%), Gaps = 119/756 (15%)
Query: 46 LDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVL 105
+ +G V K++ TP++V + PE + NRV+R Y + LR++F D+D K+ +
Sbjct: 499 MREGYQRVRKIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRTNKT 558
Query: 106 SPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFAS------ 159
S L+ T V + L +GI + + F L SNSQ++DN +
Sbjct: 559 STLLEKT-----------VNNYLHSGITVAGRNFGYLGSSNSQMRDNGAYFMEKYSSSQC 607
Query: 160 ---------------RPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSR-EALHVDS 203
P++ AA R+++G F I N+ K ARLGQ F SR +++D
Sbjct: 608 REYEAIHHVKPPITYNPKIQAA--RKNLGRFETIDNIPKMMARLGQCFTQSRLSGVNLDR 665
Query: 204 SDIEIIPDV----EVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGY 259
+ D+ ++ D Y FSDG+G +S A++V++ F PS FQ+
Sbjct: 666 CTYMTMYDLTGGKNIKRD--EYTFSDGVGMMSLRFAQMVSQVMDFGKGVPSCFQVFLNPI 723
Query: 260 KGVVAV------------------DPTSSTKLSL----RKSMLKYKSESTSLDILANSKY 297
+ P+ L R S +K+ S+ D + KY
Sbjct: 724 APKTPIFSPLLDMIRKWSLEFALEKPSDDVAWGLNCVFRPSQIKFISKRHPRDQVEIVKY 783
Query: 298 Q---PCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENT 354
P LN+ I +L D V E + E ++ + + L L + T
Sbjct: 784 SSPVPVSLNKPFINIL------DQVSEMQSLECHRRVTNRIEELLDRQMLLFAQQMVDET 837
Query: 355 ---NVLKEL----------LMCGYKPDVEPFLLMMLQ-TFRASNLLELRTRTRIFIQN-G 399
N LKEL G+ EPF +++ + + S +LR Q+ G
Sbjct: 838 FCRNRLKELPRRVDIDYLRTTWGFTLSSEPFFRSLIKASIKFSITKQLRKEQIPIPQDLG 897
Query: 400 RAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPG 459
R+M+G +DETG L+ GQ+FVQ + + L ++ V+ G V++ KNPC+ G
Sbjct: 898 RSMLGVVDETGRLQYGQIFVQYTKN-----LALKLPPKNAARQVLTGTVLLTKNPCIVAG 952
Query: 460 DMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPP 519
D+R+ AVD+P LHHM D VVFP G RPH +E +GSDLDGD Y + WD +L+ P
Sbjct: 953 DVRIFEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLDKNEDP 1012
Query: 520 MDYTPAPEKVLARDMTIEDV-EEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLEL 578
D+T +K ++ I+D+ E++ Y+ DS+G I N+H+ ++D AR C++L
Sbjct: 1013 FDFTSEKQKSSFKEEEIDDLMREFYVKYLKLDSVGTISNSHLHNSDQYGLNARV--CMDL 1070
Query: 579 AKLSTIAVDFSKTG---------------VAATIPSGLRVEIYPDFMEKQDKT-CYESQR 622
AK + AVDF+K+G IP R E PD+ D T Y S R
Sbjct: 1071 AKKNCQAVDFTKSGQPPDELERKWRKDEETGEMIPPE-RCERVPDYHMGNDHTPMYVSPR 1129
Query: 623 VIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNR--- 679
+ GKL+R K I + ++V + S D ++ ++G+E Y+ A + Y+ +
Sbjct: 1130 LCGKLFREFKAIDDVLKISEERDEQVEI-SIDENIMMEGYESYMHSARDELSRYNAQLRV 1188
Query: 680 --LGNLMDYYGIKTEAEILSGCIMEMAKSF-DKKRD 712
L ++M+ YGIKTE E+ SGCI++M DK +D
Sbjct: 1189 SFLDSMMENYGIKTEGEVFSGCIVDMRNRISDKDQD 1224
>gi|336467963|gb|EGO56126.1| hypothetical protein NEUTE1DRAFT_64449 [Neurospora tetrasperma FGSC
2508]
gi|350289794|gb|EGZ71019.1| RdRP-domain-containing protein [Neurospora tetrasperma FGSC 2509]
Length = 1350
Score = 280 bits (715), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 195/640 (30%), Positives = 327/640 (51%), Gaps = 70/640 (10%)
Query: 49 GLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDED-LDKLYSTVLSP 107
GL + + LVTP+++ GPE+ NR++R +P+ D+FLR+ F +ED D +++ +S
Sbjct: 408 GLTKIYRALVTPTRIELHGPELEAKNRILRKFPEHQDHFLRVQFGEEDGQDLFFNSAVS- 466
Query: 108 LISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA-----SRPE 162
IY+R L NGI +G + + L FS+S ++ +S+W+ A R +
Sbjct: 467 ---------MDAIYQRFKDVLTNGISVGGRVYRFLGFSHSSLRAHSLWLAAPFIYNGRLQ 517
Query: 163 LTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYC 222
L A +I E +GDF +IK+ A+ AAR+GQ+F + ++ +D+ I++I +++ +
Sbjct: 518 L-ANNIIEGLGDFGNIKSPARRAARIGQAFSETPYSVSLDTHGIDVIRQRDIKRN--ERV 574
Query: 223 FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLK 281
FSDG+G IS E++ + + P+ Q+R+ G KG++A+D ++ +R SM K
Sbjct: 575 FSDGVGIISQGALEVIHREIPESKGYPNCLQVRWAGAKGMLALDARLPGRQICIRDSMEK 634
Query: 282 YKS-ESTSLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPL 339
++S + L+I SK P LNRQ+I +L +G F K Q + + +L AI +
Sbjct: 635 FRSRDEEHLEICDMASKPIPLMLNRQMIKILEDMGAPAKWFMKLQEKELQRLRAITDNVQ 694
Query: 340 KAHEALELMSSGENTNV---LKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFI 396
L+L G++ ++ LK+L + FL +++ L L+ + RI +
Sbjct: 695 NVATFLKLQCVGDSVHLSQFLKDLDKMNIDYRRDQFLRGIVEAVVLRELRLLKHKARIPV 754
Query: 397 QNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCL 456
G + G +DETG L G+V+V E +D G VVV ++P L
Sbjct: 755 PYGVTLFGVMDETGLLREGEVYVTF------ETVDGRFKGPP-----TAGPVVVTRSPAL 803
Query: 457 HPGDMRVLRAVDVPSLH---HMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP 513
HPGD+++ V P+ H + +C+VF G+R ++ SG DLDGD + V WD ++
Sbjct: 804 HPGDIQIAYNVIPPAGHPLRELKNCIVFSQNGERDLPSQLSGGDLDGDTFNVIWDQRIVS 863
Query: 514 PLQ-FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARS 572
L+ FP DY L R++ +D+ ++F +++ D LGVI H++ AD +
Sbjct: 864 TLRTFPAADYPRVEPLKLNREVESKDMADFFVEFMKADHLGVIAVRHMILADERDEGTLD 923
Query: 573 NQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIY-PDFM------EKQDKTC-------- 617
CL+LA L + AVDFSK+G+ I R +Y PDF+ + DK+
Sbjct: 924 ADCLKLAALHSKAVDFSKSGIHVDITELPRPPMYRPDFLVNGPDIKIHDKSTIDMEEQYL 983
Query: 618 ---------------YESQRVIGKLYRAVKDIAPPTATIK 642
Y+S++++G L+RAV + T IK
Sbjct: 984 KQDDDDGDDTPRYKYYKSEKILGHLFRAVDEKKIWTKNIK 1023
>gi|336273462|ref|XP_003351485.1| hypothetical protein SMAC_00026 [Sordaria macrospora k-hell]
Length = 1226
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 200/666 (30%), Positives = 337/666 (50%), Gaps = 74/666 (11%)
Query: 22 VRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYP 81
++ LEE ++ L + P + GL + + LVTP+++ GPE+ NR++R +P
Sbjct: 385 IKHLEETEKR--LRESYTLRPNDEIPSGLTKIYRALVTPTRIELHGPELEAMNRILRKFP 442
Query: 82 DEIDNFLRLSFVDEDLDKLY--STVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKF 139
+ D+FLR+ F +ED L+ STV IY+R L GI +G + +
Sbjct: 443 EHQDHFLRVQFGEEDGQDLFFNSTV-----------SMDVIYQRFKDVLTKGISVGGRVY 491
Query: 140 ETLAFSNSQVKDNSMWMFASRPEL------TAADIRESMGDFRDIKNVAKYAARLGQSFG 193
L FS+S ++ +S+W+ A P + + +I E +GDFR+I++ A+ AAR+GQ+F
Sbjct: 492 RFLGFSHSSLRAHSLWLSA--PFIHNGVLRISENIIEGLGDFRNIRSPARRAARIGQAFS 549
Query: 194 SSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQ 253
+ ++ + I +I +V+ FSDG+GKIS E++ + + P+ Q
Sbjct: 550 ETPYSVSLHDHGIAVIRQNDVKRG--KRVFSDGVGKISQGALEVIHREIPASKGYPNCLQ 607
Query: 254 IRYGGYKGVVAVDPT-SSTKLSLRKSMLKYKS-ESTSLDIL-ANSKYQPCFLNRQLITLL 310
+R+ G KG++A+D ++ +R SM K++S + L+I SK P LNRQ+I +L
Sbjct: 608 VRWAGAKGMLALDARLPGRQICIRDSMEKFRSHDEEHLEICDMASKPIPLMLNRQMIKIL 667
Query: 311 STLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVE 370
+G F + Q + + +L AI L+L G++ + L + L +K +++
Sbjct: 668 EDMGAPAKWFVRLQEKELQRLRAITNSVHNVAAFLKLQCVGDSVH-LGQFLKDVHKMNID 726
Query: 371 ----PFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRR 426
FL ++++ L L+ + RI + G + G +DETG L G+V+V
Sbjct: 727 YRKDQFLRGIVESVVLRELRLLKHKARIPVPRGITLFGVMDETGLLREGEVYVTYETVDD 786
Query: 427 REFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLH---HMVDCVVFPA 483
R F D + G VVV ++P LHPGD+++ + V P+ H + +C+VF
Sbjct: 787 R-FKDPPTS----------GSVVVTRSPALHPGDIQIAQNVIPPAGHPLRELKNCIVFSQ 835
Query: 484 KGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ-FPPMDYTPAPEKVLARDMTIEDVEEY 542
G+R ++ SG DLDGD + V WD +++ L+ F DY + L R++ +D+ ++
Sbjct: 836 NGERDLPSQLSGGDLDGDTFNVIWDQKIVSKLETFAAADYPRVTPRELNREIESKDMADF 895
Query: 543 FADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLR 602
F +++ D LGVI H++ AD+ CL+LA+L + AVDFSK+G+ I R
Sbjct: 896 FVEFMKADHLGVIAVRHMILADVRDQGTGDEDCLKLAELHSQAVDFSKSGIHVDITELPR 955
Query: 603 VEIY-PDF--MEKQDKT-----------------------CYESQRVIGKLYRAVKDIAP 636
Y PD ++ DK+ Y S++++GKLYRAV +
Sbjct: 956 PPRYRPDLPDVKIHDKSKIDLEEQYLKPDNDDDDDTPRYKYYASKKLLGKLYRAVDETKI 1015
Query: 637 PTATIK 642
T IK
Sbjct: 1016 WTRDIK 1021
>gi|358366477|dbj|GAA83098.1| rna-dependent rna polymerase [Aspergillus kawachii IFO 4308]
Length = 1212
Score = 278 bits (712), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 198/704 (28%), Positives = 333/704 (47%), Gaps = 83/704 (11%)
Query: 27 EQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDN 86
+Q +K VL ++ + + L ++KV+VTP++V GPE+ NR++R +P D
Sbjct: 393 KQNQKDVLQDLAVSGDILGPSENLTPIHKVMVTPTRVTLHGPELEPRNRILRRFPKHHDF 452
Query: 87 FLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSN 146
F+R+ F DE+ L+ + + ++ R S L GI I + + L +S+
Sbjct: 453 FIRVQFCDENGQDLHFN---------SRVHYDDVFSRFKSVLTRGIQIAGRTYSFLGWSH 503
Query: 147 SQVKDNSMWMFA-----SRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHV 201
S ++ +++W + S T I +++GDF I++ A+ AAR+GQ+F + A+ +
Sbjct: 504 SSLRSHAVWFSSPFVDESGQFQTHFSIIKALGDFSKIQSPARCAARIGQAFTDTHYAISL 563
Query: 202 DSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKG 261
DI + +V + FSDG+G +S ++AE + + P+ FQ+R GG KG
Sbjct: 564 SEYDINVSEVADVTSNDGKRVFSDGVGTLSWDVAETIWHHIPEKKGLPTCFQVRLGGAKG 623
Query: 262 VVAVDP-TSSTKLSLRKSMLKYKSESTSLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHV 319
++AVD S +++++R SM+K++ + L+I +K LNRQ+I +L +G D
Sbjct: 624 MLAVDGRLSGSQVNIRPSMIKFQGDMKDLEICDMAAKPMGLVLNRQMIKILEDMGTPDEW 683
Query: 320 FEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKP---DVEPFLLMM 376
F Q + +L ++ + ++ + G++ + + C + EPF+ +
Sbjct: 684 FITLQEAALTKLRSVTASAHNSEVFIKKQAVGDSIGLYRLFRHCHLRDLDYKKEPFIRSV 743
Query: 377 LQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNN 436
++ L L+ + RI + G + G +DETG LE+ QV+V R +
Sbjct: 744 VEAVVLKELRLLKHKARIPVFKGITLFGVMDETGLLEAEQVYVTYEPVEGRHAPPPNS-- 801
Query: 437 RSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLH---HMVDCVVFPAKGKRPHTNEC 493
G V+V ++P LH GD++ + V P H + +C+VF +KG R ++
Sbjct: 802 ---------GTVLVTRSPALHDGDIQYAQNVIPPDNHPLAELTNCIVFSSKGYRDLPSQL 852
Query: 494 SGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLG 553
SG DLDGD++ V WD + P F P DY + R + +D+ ++F D++ D LG
Sbjct: 853 SGGDLDGDIFNVIWDTDAYPVRTFAPADYPRVSPVDIGRPVERDDMAQFFLDFMKTDHLG 912
Query: 554 VICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAAT---IPSGLRVEIYPDFM 610
+I H++ AD E + C +LA+L + AVDFSKTG+ IP G PDFM
Sbjct: 913 MIATRHMIMADQEEEGTSHPVCRQLAQLHSTAVDFSKTGIPVQLGDIPKG--NPFRPDFM 970
Query: 611 --------------------------EKQD----KTCYESQRVIGKLYRAVKDIAPPTAT 640
E D Y S +++GKLYR V
Sbjct: 971 APGPVARIHNKSEIELEEYVIQTAYDEDNDLEPFHRYYRSDKILGKLYRGV--------- 1021
Query: 641 IKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKT-EYDNRLGNL 683
E + D +V ED + F + T E N+LGNL
Sbjct: 1022 -----DERHIWQKDIQSKVQPNEDEFWNEFLWSTLERCNKLGNL 1060
>gi|452977804|gb|EME77568.1| hypothetical protein MYCFIDRAFT_60792 [Pseudocercospora fijiensis
CIRAD86]
Length = 1015
Score = 278 bits (711), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 188/590 (31%), Positives = 302/590 (51%), Gaps = 47/590 (7%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
++KV+VTP+ + GPE +NRV+R Y + ID+F+R+ F DE P+
Sbjct: 210 IHKVIVTPAGIRLEGPEPEPTNRVLRKYAENIDDFVRVVFQDEHG--------GPVRYDP 261
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM---FASRPE--LTAAD 167
+ +ER + L IVI + F L FS+S ++ S W F +R + A
Sbjct: 262 RTDLARIYHERFRNVLDTSIVICGRGFSFLGFSHSSLRSQSCWFMAPFVNRNGRLIFAEK 321
Query: 168 IRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSS---DIEIIPDVEVEDDGITYCFS 224
+ + +GDF I+ AK AAR+GQ+F + +H++ D+++I E +G FS
Sbjct: 322 VLKGLGDFSSIRTPAKCAARIGQNFTDTNATVHLEPDQVFDLQVI-----ERNG--RDFS 374
Query: 225 DGIGKISAELAEIVAKNCGFT-IYTPSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKY 282
DG+G IS L V + G + P+ QIR+ G KG+V++DP K L LR +M KY
Sbjct: 375 DGVGTISEALLREVWRRYGTKKMLKPTVLQIRFQGAKGMVSLDPRLPGKALMLRANMRKY 434
Query: 283 KSEST-SLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVA---QLDAILTD 337
+E++ L+I A K P LN+Q I + LGI VF QR + Q+ A+ +
Sbjct: 435 DTETSWVLEICGAGFKPLPMVLNQQFIKIFEDLGIPMSVFLDLQRSAMKHLRQMTALSVN 494
Query: 338 PLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQ 397
K E + + ++++L G+ + FL +++ + L +++ R RI ++
Sbjct: 495 SAKLLEDSGIARATGMPRLIRDLAQIGFDYHEDHFLYSIVEMAVVTQLRDIKYRARIPVE 554
Query: 398 NGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLH 457
G + G +DETG L+ GQ+FV + G+ +++ KVV+ ++P +H
Sbjct: 555 AGVTLYGIMDETGYLKEGQIFVITEKA-----------PEGGKHILIKDKVVITRSPAMH 603
Query: 458 PGDMRVLRAVDVPS---LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP 514
PGD++V+ AVDVP L + + VVF G R ++ SG DLDGD+Y + W ++P
Sbjct: 604 PGDIQVVDAVDVPPNSLLRRLSNVVVFSKWGDRDLPSKLSGGDLDGDIYNIIWHEGMVPR 663
Query: 515 LQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQ 574
+ DY VL R++TI+D+ ++F ++ D LG+IC H AD +
Sbjct: 664 TTYTAADYPRVSPLVLDREVTIKDMSDFFVTFMETDLLGMICTTHKQLADQREAGSLDPD 723
Query: 575 CLELAKLSTIAVDFSKTGVA---ATIPSGLRVEIYPDFMEKQDKTCYESQ 621
CL LA L++ AVD+SKTG++ IP + PDFM + S+
Sbjct: 724 CLTLAGLASTAVDYSKTGISVKHTQIPRNDKHIFRPDFMSPTPRVVVSSE 773
>gi|393904650|gb|EJD73758.1| RNA dependent RNA polymerase [Loa loa]
Length = 1022
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 222/731 (30%), Positives = 351/731 (48%), Gaps = 112/731 (15%)
Query: 149 VKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREAL-----HVDS 203
++DN + + A IRE +G F D N+ K +R+GQ F ++ H +
Sbjct: 1 MRDNGCYFYDDGKGGQAHKIREQLGKF-DRCNIPKMMSRMGQCFTQAKRCTVTLKRHKYN 59
Query: 204 SDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVV 263
++I + + Y FSDG GK+S E AE +A + G PS +QIR+ G KGV+
Sbjct: 60 KTYDVIGGRDT--NQAFYIFSDGAGKVSKEFAEKIALDIGLGTSVPSCYQIRHRGIKGVL 117
Query: 264 AVDPT--------------SSTKLS---------LRKSMLKYKS-ESTSLDILANSKYQP 299
+VDP+ + K++ R S K+K+ ++I+ S
Sbjct: 118 SVDPSLDQRKHWAAANNVVDNNKMTNKQNDLAVLFRPSQDKFKAPRDEYIEIVKYSTPTS 177
Query: 300 CFLNRQLITLLSTL-GIRDHVFEKKQREGVAQLDAI----LTDPLKAHEAL--ELMSSGE 352
LNR +I++L + G++ ++ R+ + L I L D L + E +L
Sbjct: 178 VCLNRPMISILDQVSGMQGFSVHERIRKRIHDLLDIQMTQLADMLMSEEKCREKLNELPW 237
Query: 353 NTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFI--QNGRAMMGCLDETG 410
NV + L G+ EPF +L+ L +L + +I + GR+M G +DETG
Sbjct: 238 RVNVSRLTLARGFALTQEPFFRSLLRANIKCTLKKLIAKVQIQVPPHFGRSMFGVMDETG 297
Query: 411 TLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVP 470
L+ GQVFVQC+ R +L ++S ++ GKV++ KNPC+ GD+RV AVD+P
Sbjct: 298 QLQWGQVFVQCT---RSIWLKTP--SKSAAKIILVGKVMLTKNPCIVAGDVRVFEAVDIP 352
Query: 471 SLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAP--EK 528
LHH+VD VVFP G RPH +E +GSDLDGD Y V WD EL+ PP+D+T + K
Sbjct: 353 ELHHLVDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDPELMFEHNEPPLDFTKSASDNK 412
Query: 529 VLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDF 588
++ + ++ ++F +YI DS+G I NA +V+ADL S C+ +A+ + AVDF
Sbjct: 413 IVEEEQVDLEMRKFFVNYIKQDSIGTISNAFLVNADLY--GITSEVCINIARKHSKAVDF 470
Query: 589 SKTGVAATIPSGL----------------RVEIYPDFMEKQDKTCYESQRVIGKLYRAVK 632
KTG A PS L R E +PDFM K + Y S R++G+LYR ++
Sbjct: 471 PKTGNA---PSPLTRQWTQGKNGNILPPERAERWPDFMCKNHEPSYISSRLVGQLYRRIR 527
Query: 633 DIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTE 692
+ + V + D D+E G+E Y A Y + + ++M+ YGI+ E
Sbjct: 528 LLDDALNLTAAMEGSVTIM-LDPDLEYPGWEQYQNVAKIQLDSYHSHIRSIMENYGIEDE 586
Query: 693 AEILSGCIMEMAKSFDKKRDLEAIIFAVKS--LKKEARAWFNK----------------- 733
++ SG I + ++ RD + + F + ++K+ A F
Sbjct: 587 GQLFSGFI-SVIRNRISDRDTDDMSFYNTNHIIEKKVSAVFRAYRHRFFDEFGGFLESTL 645
Query: 734 ----KNESDSSHE---------DVYAKASAWYHVAYHPSYWGRYKEEGMNRTH-FLSFPW 779
N+S ++ E D+ KASA+Y + Y+ M+ ++ LSF W
Sbjct: 646 PDYDDNQSGNAQERRICIHPSLDMKRKASAYYILC--------YRNASMDTSYRILSFGW 697
Query: 780 CIHDKLIEIKR 790
+ D L +K+
Sbjct: 698 LVWDILCHVKQ 708
>gi|443899804|dbj|GAC77133.1| RNA-directed RNA polymerase QDE-1 [Pseudozyma antarctica T-34]
Length = 1455
Score = 276 bits (705), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 201/630 (31%), Positives = 320/630 (50%), Gaps = 65/630 (10%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISS 111
+V V +TP+++ GP + SNRV+R +PD +F+R++F DED D+ V +
Sbjct: 442 HVYHVTITPTRMLLDGPFMDASNRVLRMFPDFGSHFVRVAFCDEDGDRF--PVSRHDLDG 499
Query: 112 TNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELT-----AA 166
+ E + + ER+ L+ GI I +KFE LA+S S + + W + + A
Sbjct: 500 IDSE--SFVRERIGDPLKYGIAIAGRKFEALAWSGSGLGSHHCWFVTAFTDKVGKLWDAE 557
Query: 167 DIRESMGDFRDI-KNVAKYAARLGQSFGSSREALHVDSSDIEIIPDV---------EVED 216
IR+++G+FR I + A+ ARL Q+F ++ ++ +++ +EIIPD E
Sbjct: 558 RIRQALGNFRSIDRYPARLGARLSQAFSATSSSITIENDWVEIIPDELSNAQMPSNGPER 617
Query: 217 DGITYCFSDGIGKISAELA-EIVAKNC---GF----------TIYTPSAFQIRYGGYKGV 262
D Y +DG+G+IS L EI C G PSA Q R GG KGV
Sbjct: 618 DRKYYLLTDGVGQISKSLLDEIWHALCETRGMRREWRLSQQDPRRIPSAIQFRCGGAKGV 677
Query: 263 VAVDPT-SSTKLSLRKSMLKYKS-ESTSLDILANS-KYQPCFLNRQLITLLSTLGIRDHV 319
+ ++PT K+ +R+SM+K+ + + L++ A+S P LNR LI L LG++D V
Sbjct: 678 LCLNPTLKGKKMIMRESMIKFSAPKHRELEVAAHSFSPLPARLNRPLINALEDLGVKDDV 737
Query: 320 FEKKQREGVAQLDAILTDPLKAHE---ALELMSSGENTNVLKEL-LMCGYKPD-VEP--F 372
F Q V +A + + + + E + + L + G +PD ++P
Sbjct: 738 FLNLQASAVESAQEARKSFKRASQLMGSFAMSDAAEMHKLFRRLDSVIGMRPDELDPDSI 797
Query: 373 LLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDN 432
L + A+ L +L+ + RI +Q G ++G +DE LE GQ+F Q + + EF
Sbjct: 798 LHRLCTIVIAAALGDLKRKARIPVQ-GCTLIGVVDEFNFLERGQIFAQVNDRDQDEFR-- 854
Query: 433 SCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMV---DCVVFPAKG-KRP 488
+VEGKV+V ++P +HPGD+RV+ AV P H ++ + +VF RP
Sbjct: 855 ----------IVEGKVMVGRSPTIHPGDVRVVSAVKPPPGHPLLQLRNVIVFSKSPFGRP 904
Query: 489 HTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIV 548
+ SG DLDGD+Y + D +L P P Y P + LAR T ED+ ++F DY++
Sbjct: 905 LQSILSGGDLDGDIYTIYEDKDLFPTRTESPGQYKSVPPRSLARPCTFEDLADFFVDYVI 964
Query: 549 NDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAA---TIPSGLRVEI 605
ND +G++ H+ AD P + C++LA+L AVD+ KTG A +P
Sbjct: 965 NDQVGLVSTFHLHIADTSPLHSLDPDCIKLAQLHAKAVDYRKTGQAVHRRDVPMPPFNSP 1024
Query: 606 YPDFMEKQ--DKTCYESQRVIGKLYRAVKD 633
PDF+ ++ Y S R +GKL+RA+ +
Sbjct: 1025 RPDFLAQRPAGPGIYSSTRALGKLFRAIPE 1054
>gi|380493792|emb|CCF33621.1| RNA dependent RNA polymerase, partial [Colletotrichum higginsianum]
Length = 1278
Score = 275 bits (702), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 208/743 (27%), Positives = 352/743 (47%), Gaps = 87/743 (11%)
Query: 36 RRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDE 95
R L P + L++ K +VTP+++ GPE NR++R +P++ F+R++F DE
Sbjct: 428 RSALLEPNMGNHHALVF--KAMVTPTRITLHGPEPEPMNRILRRFPNQTSYFIRVTFCDE 485
Query: 96 DLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMW 155
D L+ +P +S + I++R L GI I + ++ L FS+S ++ +S W
Sbjct: 486 DGGDLF---FNPRVS------YDQIFDRYREVLNGGIPIAGRIYQFLGFSHSSLRSHSAW 536
Query: 156 MFASRPELTA-----ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI-- 208
A + +I +++GDF I+ AK AAR+GQ+F + + + + I
Sbjct: 537 FSAPFVDDGGKLQLYGNIIKALGDFEHIEIPAKCAARIGQAFSETPTFIKLAENRIRHSN 596
Query: 209 IPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP- 267
IPDV+ +D I FSDG+G IS ++ E+V P+ QIR+GG KG++++D
Sbjct: 597 IPDVKSQDGDIERVFSDGVGTISQDVLELVWPRLPRGSLIPTCLQIRWGGVKGMLSLDSR 656
Query: 268 -TSSTKLSLRKSMLKYKSEST-SLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQ 324
T R+SM K+ S +L+I A S+ LNRQ+I ++ LG+ ++F + Q
Sbjct: 657 LMGRTICVRRESMEKFPSNDVENLEICDAASRPLKLVLNRQMIKIMEDLGVDSNLFLQLQ 716
Query: 325 REGVAQLDAILTDPLKAHEALELMSSGEN---TNVLKELLMCGYKPDVEPFLLMMLQTFR 381
++ V +L A+ D L L G +++K L G + FL ++++
Sbjct: 717 KKEVDRLRAVTADAYNTGTFLHLQGVGSTFFLPSLIKSLKNYGIDYRRDSFLRAVVESTV 776
Query: 382 ASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGEL 441
L L+ + RI + G + G +DETG L G+V+V C + +R N+
Sbjct: 777 LQELRLLKHKARIPVPEGATLFGIMDETGFLREGEVYV-CYDTYKRPGKSPMKNS----- 830
Query: 442 GVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLH---HMVDCVVFPAKGKRPHTNECSGSDL 498
+ +G V+V ++P LHPGD++ + P H ++ +C+ F +G R + SG DL
Sbjct: 831 -LRDGPVLVTRSPALHPGDIQYVNMRTPPPGHPLRNLRNCIAFSQRGHRDLPSMLSGGDL 889
Query: 499 DGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNA 558
DGD+Y + WD P F DY + L R + +D+ +F D++ +D LG+I
Sbjct: 890 DGDLYNIIWDKAAAPKRTFKAADYPRVTPEPLGRPVERKDMANWFVDFMKSDVLGLIATR 949
Query: 559 HVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAAT---IPSGLRVEIYPDFM----- 610
H++ +D +P CL+LA L + AVDFSKTGVA IP + PDF+
Sbjct: 950 HLILSDQDPVGTLGQDCLKLAGLHSTAVDFSKTGVAVEPRDIPKA--PQFRPDFLAPAPP 1007
Query: 611 -EKQDKT------------------------CYESQRVIGKLYRAV-------KDIA--- 635
+ D+T Y S++++G LYR V +DI+
Sbjct: 1008 AQLYDRTQINFLGRDEGVDDDDEDAAGPNHKYYRSEKILGVLYRNVDEKQIWDEDISRVV 1067
Query: 636 --PPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIK--- 690
+ F + + + + +E + +A + Y++ +G M Y
Sbjct: 1068 SKTGPSVWAQFVGLMQRKIKEYSAGLIRWETRLEEAKSLRNVYEDTVGGFMTQYSDSHMK 1127
Query: 691 --TEAEILSGCIMEMAKSFDKKR 711
TE E+ G I + S +++
Sbjct: 1128 QLTEVEVFCGSIFNKSGSQTRRQ 1150
>gi|302907308|ref|XP_003049617.1| hypothetical protein NECHADRAFT_123067 [Nectria haematococca mpVI
77-13-4]
gi|256730553|gb|EEU43904.1| hypothetical protein NECHADRAFT_123067 [Nectria haematococca mpVI
77-13-4]
Length = 1261
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 203/637 (31%), Positives = 316/637 (49%), Gaps = 72/637 (11%)
Query: 46 LDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVL 105
L D ++V K LVTP++V GP+ NRV+R +PD D+FLR+ F DED L
Sbjct: 421 LPDHQVWVFKALVTPTRVLLHGPDAESKNRVLRMFPDNNDSFLRVIFCDEDGQDLN---F 477
Query: 106 SPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASR----- 160
+P I NE+ + R + +GI I +K+ L FS+S ++ +S W FAS
Sbjct: 478 NPRID--NED----TFSRYRKVMDDGIDIAGRKYTFLGFSHSSLRSHSAW-FASPFVDGN 530
Query: 161 -PELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI--IPDVEVEDD 217
T + I E++GDF+DI+ AK AAR+GQ+F + A+ + + I IPD++ D
Sbjct: 531 YQSQTISVILEALGDFQDIRVPAKCAARIGQAFSETPYAVPLFENSITTRHIPDIKTADG 590
Query: 218 GITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK-LSLR 276
+ FSDG+G IS + E V P+ QIR+GG KG++++D K +R
Sbjct: 591 --SRVFSDGVGTISQDALEDVWMYLPMRSAAPTCLQIRWGGCKGMLSLDTRLEGKTFCIR 648
Query: 277 K-SMLKYKSES-TSLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDA 333
K SM+K+ S T L I +SK LNRQ+I +L +G ++ F Q + + L
Sbjct: 649 KESMMKFPSNDLTELGICDTSSKPLRLVLNRQMIKILEDMGTQNDWFFDLQNKALNVLRG 708
Query: 334 ILTDPLKAHEALELMSSGENTNV---LKELLMCGYKPDVEPFLLMMLQTFRASNLLELRT 390
+ LE + G N + +K+L G + FL ++ L L+
Sbjct: 709 VTASAHNTSTFLEYQTIGVNMGLPKLVKQLDRMGIDYRRDKFLRSAVEHVVLRELRLLKH 768
Query: 391 RTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVV 450
+ RI ++ G + G +DETG L+ QV+V + N R + +G ++V
Sbjct: 769 KARIPVEKGVTLFGVMDETGFLKERQVYVTYDKTY------GVKNGRRINATLEDGIILV 822
Query: 451 AKNPCLHPGDMRVLRAVDVPSLH---HMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCW 507
++P LHPGD++V V P H ++ +C+VF KG R ++ SG DLDGD+Y + W
Sbjct: 823 TRSPALHPGDIQVAEMVTPPKGHPLRNLQNCIVFSQKGDRDLPSQLSGGDLDGDLYNIIW 882
Query: 508 DHELIPPLQFPPMDY---TPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHAD 564
D +P F P DY TP P L R +T +D+ ++F +++ D LG+I HV+ AD
Sbjct: 883 DERAMPEKVFEPADYPRVTPVP---LDRPVTPKDIADFFINFMRTDILGMIATRHVMLAD 939
Query: 565 LEPDKARSNQCLELAKLSTIAVDFSKTGVAATI-----PSGLR---------VEIY---- 606
+C+ LA++ + AVDFSKTG+ + P R +++Y
Sbjct: 940 SHDLGTLHPECISLAEMHSTAVDFSKTGIPVEVKKLPKPPRFRPDFLAMAPPLKLYDLGQ 999
Query: 607 ------------PDFMEKQDKTCYESQRVIGKLYRAV 631
D M + Y+S +++G LYR+V
Sbjct: 1000 IDHIGDPEEYDEDDMMARAKPKYYKSTKILGHLYRSV 1036
>gi|398389633|ref|XP_003848277.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
gi|339468152|gb|EGP83253.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
Length = 1234
Score = 274 bits (700), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 187/588 (31%), Positives = 300/588 (51%), Gaps = 38/588 (6%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
V+KV+V P+ + GPE +NRV+R Y D FLR+ F DED + + L
Sbjct: 423 VHKVVVMPTGLRLEGPEPEPTNRVLRRYAKYTDFFLRVEFRDEDGATVRYDPRTDL---- 478
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM---FASRPELTAAD-I 168
H + R + L + I+I + F L FS+S ++ S W F L AD +
Sbjct: 479 ----HRVYHGRFKTVLDSSILISGRAFSFLGFSHSSLRSQSCWFMAPFVFNGSLRYADHV 534
Query: 169 RESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIG 228
+ +G+F+ I+ AK AAR+GQ+F + ++ + + + DVE +G T FSDG+G
Sbjct: 535 LQDLGEFKMIRTPAKCAARIGQNFTDTNTSVELRPEQVYWLNDVE--RNGRT--FSDGVG 590
Query: 229 KISAELAEIVAKNCGFT-IYTPSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSES 286
IS EL + V + G + P+ QIR+ G KG+V++D K L+LRKSM K+++E+
Sbjct: 591 IISMELLQSVWRVYGTRRLLKPTILQIRFQGCKGMVSLDTRLRGKCLALRKSMRKFQTET 650
Query: 287 T-SLDILANS-KYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEA 344
T L+I + + P LNRQ + LGI VF Q++ V +L + +
Sbjct: 651 TWDLEICGAAFRPLPMILNRQFTKIFEDLGIPLSVFMDLQQKSVDKLRRMTHSAINTANF 710
Query: 345 L---ELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRA 401
L E + ++++ L G +PFL +++ S L +++ R RI I +G
Sbjct: 711 LDETECTKAARVPSLIRYLGQMGLDYRHDPFLYNVVEMSVVSKLRDIKYRGRIPIDDGVT 770
Query: 402 MMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDM 461
+ G +DETG L++ ++FV + G +V V+V ++P +HPGD+
Sbjct: 771 LYGIMDETGVLKANEIFVVTEKA-----------PLGGRSVLVRNNVIVTRSPAMHPGDV 819
Query: 462 RVLRAVDVPS---LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFP 518
+++ AVDVP L + + VVF G R + SG DLDGD+Y V W +L+P + +
Sbjct: 820 QIVNAVDVPQGSPLRQLSNVVVFSQHGDRDLPSMLSGGDLDGDIYNVIWLPQLVPEVTYD 879
Query: 519 PMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLEL 578
DY P + L RD+ +D+ ++F ++ +D LG+IC AH+ AD C++L
Sbjct: 880 AADYPKVPTEELDRDVNRKDMSDFFVKFMESDQLGMICTAHLQIADQRERGVLDPDCIKL 939
Query: 579 AKLSTIAVDFSKTGVAATIPSGLRVE-IYPDFMEKQDKTCYESQRVIG 625
+ +++ AVDFSKTG+ + R + PDFM + Q I
Sbjct: 940 SAMASTAVDFSKTGIPVNLAQMPRYDRCKPDFMAPSPRVIVSEQGYIA 987
>gi|346325370|gb|EGX94967.1| rna-dependent rna polymerase [Cordyceps militaris CM01]
Length = 1252
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 213/748 (28%), Positives = 348/748 (46%), Gaps = 101/748 (13%)
Query: 26 EEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEID 85
E R LSR + P++ +V K +V+P+++ GP+ NRV+R +PD D
Sbjct: 412 EAGLRSRDLSRSGVYGPSIPPHQ--TWVFKAIVSPTRISLQGPDPESRNRVLRMFPDRGD 469
Query: 86 NFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFS 145
FLR+SF DED +L +P +S + IYER L GI I + F L FS
Sbjct: 470 QFLRVSFCDEDGQRL---AFNPRVS------NDPIYERFREVLTKGIRIAGRHFSFLGFS 520
Query: 146 NSQVKDNSMWMFASRPELTAADIRES-------MGDFRDIKNVAKYAARLGQSFGSSREA 198
+S ++ +S W A P + A R++ +G+F DI AK AAR+GQ+F + A
Sbjct: 521 HSSLRSHSTWFLA--PFIDADGQRQNRDTILAVLGNFSDILTPAKCAARIGQAFSETPYA 578
Query: 199 LHVDSSDIEI--IPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRY 256
+ + + I + IPDV+ D FSDG+G IS E K + FQIR+
Sbjct: 579 VDLFETRIGVRWIPDVKSADG--NRVFSDGVGTISWGAVEDFWKALPKRSAGVTCFQIRW 636
Query: 257 GGYKGVVAVDPTSSTK-LSLRK-SMLKYKSESTSLDILANSKYQPC--FLNRQLITLLST 312
G KG++ +DP K + +RK SM+K+ S+ + + +P LNRQ+I +L
Sbjct: 637 AGVKGLLVLDPRLPGKVICVRKESMMKFPSQDLKELGICDVASRPLRLVLNRQVIKILED 696
Query: 313 LGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNV---LKEL--LMCGYKP 367
+G F Q + + L A+ PL L+ G + +K+L + Y+
Sbjct: 697 MGTSASWFLALQNDALDFLRAVTATPLNTSTFLQYQDIGSAIGLPSFIKQLSKMDIDYRH 756
Query: 368 DVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRR 427
D FL +++ L L+ + RI + G + G +DETG L +V++ ++R
Sbjct: 757 DT--FLKSVVEHVVLRELRLLKHKARIPVPKGVTLFGVMDETGFLGENEVYITFDSTR-- 812
Query: 428 EFLDNSCNNRSGE---LGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLH---HMVDCVVF 481
+SGE +++G V+V ++P LHPGD+++ + V P H + +C+ F
Sbjct: 813 --------GKSGERMDATLIDGPVIVTRSPALHPGDIQIAKMVTPPDSHPLKSLRNCIAF 864
Query: 482 PAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEE 541
+G R ++ SG DLDGD+Y V WD + P F P DYT L R +T D+
Sbjct: 865 SQRGSRDLPSQLSGGDLDGDLYNVIWDPKAYPKHTFDPADYTRVVPPSLDRPVTRHDIAN 924
Query: 542 YFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAAT---IP 598
+F D++ +D LG+I H + AD++ C++LA++ + AVD+SKTG+A +P
Sbjct: 925 FFIDFMRSDILGLIATRHQILADVQEAGTSDASCIKLAEMHSTAVDYSKTGIAVNWRDMP 984
Query: 599 SGLRVEIYPDF-----------------------------MEKQDKTCYESQRVIGKLYR 629
R PDF M + S++++G LYR
Sbjct: 985 RAPRSR--PDFLAPAPPVFLYDLGQISHIAEDDDDDDGNDMNSAKPRYHRSEKILGHLYR 1042
Query: 630 AV-------KDIAPPTATIKSFTKEVAMQSYDTDMEVDG----FEDYITDAFKYKTEYDN 678
+ ++I + S E ++ ++ + +E + A+K + Y++
Sbjct: 1043 GIDENKIWSENIYRSIPKLSSSVWEQLLERVQAELNLRRINMYYESHRQRAWKIRALYED 1102
Query: 679 RLGNLMDYYGIK-----TEAEILSGCIM 701
+ M ++ TEAE G I+
Sbjct: 1103 SISENMWHFSENSRSHITEAEAFCGSIL 1130
>gi|400595821|gb|EJP63611.1| RNA dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 1328
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 188/632 (29%), Positives = 311/632 (49%), Gaps = 69/632 (10%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISS 111
+V K +VTP++V GP+ NRV+R + D D FLR++F DED L +
Sbjct: 480 WVLKAMVTPTRVILGGPDPESKNRVLRMFHDRTDYFLRVTFTDEDGSDL---------NF 530
Query: 112 TNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFAS-----RPELTAA 166
+ + +Y+ S ++ GI + ++F L FS+S ++ +S W A A
Sbjct: 531 NHRVSNDYVYDHYRSVMKQGIEVAGRRFSFLGFSHSSLRSHSAWFMAPFVDNRMGRQDYA 590
Query: 167 DIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI--IPDVEVEDDGITYCFS 224
+ S+GDFR+I+ AK AAR+GQ+F + A+ + S I I I DV D + FS
Sbjct: 591 TVLNSLGDFREIRIPAKCAARIGQAFSETPYAVSLRGSSIVISYIEDVRSYVDE-SRVFS 649
Query: 225 DGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK-LSLR-KSMLKY 282
DG+G IS E + +P+ QIR G KG++++DP K + +R +SM+K+
Sbjct: 650 DGVGTISQGALEEFWDVLPLNLGSPTCVQIRVAGIKGMLSLDPRLLGKQICIRAESMMKF 709
Query: 283 KSESTSLDILANSKYQPC--FLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLK 340
S + +P LNRQ+I +L +G F Q + + L +
Sbjct: 710 PSRDFVEIGICEVAARPLRLVLNRQMIKILEDMGTNRTWFRAMQAKALETLRGVTATAAN 769
Query: 341 AHEALELMSSGENTNV---LKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQ 397
LE G + + ++ + G +PFL +++ L L+ + RI I+
Sbjct: 770 TCTFLEYQGVGSSIRLPRFIRRMHAHGIDYRGDPFLKGVVEYVVLRELRLLKHKARIPIE 829
Query: 398 NGRAMMGCLDETGTLESGQVFVQCS--ASRRREFLDNSCNNRSGELGVVEGKVVVAKNPC 455
G + G +DETG L+ G++++ A R++ +++S +V+G VVV ++P
Sbjct: 830 KGVTLFGVMDETGFLKEGEIYIHYDRRAPGRKDGIEDS---------LVDGPVVVTRSPA 880
Query: 456 LHPGDMRVLRAVDVPSLH---HMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI 512
LHPGD+++ + V P H + +C+VF +G R ++ SG DLDGD Y V WD +
Sbjct: 881 LHPGDIQLAKMVTPPEKHPLRALRNCIVFSQRGGRDLPSQLSGGDLDGDKYNVIWDGGAL 940
Query: 513 PPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARS 572
P F P Y + L RD+T +D+ +F +++ D LG+I N H+++AD++P A
Sbjct: 941 PRSVFAPASYPRNKPQPLDRDVTRDDIASFFIEFMRTDVLGLIANRHLMYADIQPAGADD 1000
Query: 573 NQCLELAKLSTIAVDFSKTGVAATIPSGLR-VEIYPDFMEKQDKTC-------------- 617
C++LA+L + AVD+SKTG+ I R + PDFM T
Sbjct: 1001 PTCIKLAELHSTAVDYSKTGIPPLINEIPRQPKTKPDFMAPAPPTTTYDLGDVAFVEVDE 1060
Query: 618 ----------------YESQRVIGKLYRAVKD 633
++S++++G+LYRA+ +
Sbjct: 1061 EEDEGDDGFGRPKYRYHKSEKILGQLYRAIDE 1092
>gi|406862357|gb|EKD15408.1| RNA-dependent RNA polymerase [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1193
Score = 273 bits (697), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 219/746 (29%), Positives = 357/746 (47%), Gaps = 103/746 (13%)
Query: 45 ALDDGLI-------YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDL 97
AL DG I +++V +TPS Y GPE NRV+R YP D+F+R+SF DED
Sbjct: 403 ALVDGSISKSENHAMIHRVTITPSGFYLGGPEYEPMNRVLRQYPKHHDSFIRVSFADEDG 462
Query: 98 DKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM- 156
+ + +P +S NE+ +R + L G + +KF+ L FS+S ++ S W
Sbjct: 463 EPIR---FNPKVS--NEK---IFQDRFGTFLSTGFHVAGRKFDFLGFSHSSLRAQSCWFM 514
Query: 157 --FASRPELTAADIR-ESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVE 213
FA L + + +GDF I+ AK AAR+GQ+F + A+ ++ ++++PDVE
Sbjct: 515 SPFAHNGSLMYDRVLIQQLGDFTKIRCPAKCAARIGQAFSETPIAVPLEPGLVQLLPDVE 574
Query: 214 VEDDGITYCFSDGIGKISAELAE-IVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SST 271
+ FSDG GKIS + I A + P+ FQIRY G KG++++D T
Sbjct: 575 RG----SRVFSDGCGKISRSIMHRIWAVLPDMRKHQPTCFQIRYQGAKGMLSLDDTLEGD 630
Query: 272 KLSLRKSMLKYKSESTSLDI-LANSKYQ--PCFLNRQLITLLSTLGIRDHVFEKKQREGV 328
++ +R SM+K+ S S D+ L N+ Y+ P +LNRQLI ++ +G+ D F Q + +
Sbjct: 631 QVLMRPSMIKFDG-SPSFDLELCNASYKSLPMYLNRQLIKIMEDIGVPDQWFLDLQSQEI 689
Query: 329 AQLDAILTDPLKAHEALELMSSGENTN---VLKELLMCGYKPDVEPFLLMMLQTFRASNL 385
+L T A + L S G+ + ++++L + + FL +L+ +
Sbjct: 690 ERLRKATTSASNAAKFLSSHSIGDRVHLSWLIRKLAQMSIEFRTDRFLCDVLELSVMLEV 749
Query: 386 LELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVE 445
L+ R R + G + G +DETG LE G+++ + + + + V++
Sbjct: 750 KTLKHRARYPVPEGLTLYGIMDETGILEEGEIYCTYQSQKGKRMV------------VIQ 797
Query: 446 GKVVVAKNPCLHPGDMRVLRAVDVP---SLHHMVDCVVFPAKGKRPHTNECSGSDLDGDV 502
+V+V ++P LHPGD++ ++AV+VP L + +C+ F KG R + SG DLDGD+
Sbjct: 798 DRVLVTRSPALHPGDVQPVKAVNVPRDSPLSKLRNCICFSQKGDRDLPSMLSGGDLDGDL 857
Query: 503 YFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVH 562
Y + WD + P DY + R ++ ED+ ++F ++ D LG I +H +
Sbjct: 858 YNIIWDPGCQIRFKSFPADYPRQDPIDIGRQVSREDMTKFFVQFMETDQLGRIAMSHQIL 917
Query: 563 ADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLR-VEIYPDF--------MEKQ 613
AD + C LA++ + AVDFSKTGV + + I PDF MEK+
Sbjct: 918 ADQKDMGTFDEDCRILAEMHSTAVDFSKTGVPVDMKKMPKFTPIRPDFMSMGNHVRMEKK 977
Query: 614 DKTC-----------------------YESQRVIGKLYRAVKDIAPPTATIKSFTKEVAM 650
+ YES R++GKLYRA+ + + S K+ M
Sbjct: 978 EGLLLEATTLSTQDDNNDDDDFPAYRYYESDRILGKLYRAIDE-----HEVFSEIKKYRM 1032
Query: 651 QSYDTDMEVD-------------GFEDYITDAFKYKTEYDNRLGNLMDYYGIK-----TE 692
S T +D + ++ A + + Y++ L N+M Y +E
Sbjct: 1033 LSRKTPSVLDRVWVHVHKKCWNLQWAQHVLWAQEIREMYEDNLRNIMSSYSEHPSRPISE 1092
Query: 693 AEILSGCIMEMAKSFDKK-RDLEAII 717
E G I+ + + KK RDL +
Sbjct: 1093 LEAFIGNILSVTGTQSKKQRDLSVTM 1118
>gi|315045169|ref|XP_003171960.1| RNA-dependent RNA polymerase 1 [Arthroderma gypseum CBS 118893]
gi|311344303|gb|EFR03506.1| RNA-dependent RNA polymerase 1 [Arthroderma gypseum CBS 118893]
Length = 1204
Score = 272 bits (696), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 232/808 (28%), Positives = 379/808 (46%), Gaps = 117/808 (14%)
Query: 51 IYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLIS 110
+ V++ +VTP +Y SGP NR++R Y D ID F+R+ F+DE D ++ P
Sbjct: 416 VLVHRAMVTPCGIYLSGPYTETKNRILRKYLDNIDYFIRVEFLDETGDPVF---FDP--- 469
Query: 111 STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM-----FASRPELTA 165
S N E + ++R ++ GI I + FE L FS+S ++ + W A+ L A
Sbjct: 470 SANLE--SIFHQRFAGVMKRGIEIAGRVFEYLGFSHSSLRSQTCWFAAPFTTANGDYLDA 527
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI-IPDVEVEDDGITYCFS 224
I ++G F I++ +K AAR+GQ+F + ++ V +++ PDV+ FS
Sbjct: 528 KTIIGNIGHFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVKMKAPDVKRNGR----VFS 583
Query: 225 DGIGKISAELAEIVAKNCGFT-IYTPSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKY 282
DG+G IS EL + P+ FQIR G KG+V++D + L LR+SM+K+
Sbjct: 584 DGVGVISRELMYRIWNEYALRERVKPTVFQIRIAGAKGMVSLDTRKKGEFLMLRESMVKF 643
Query: 283 KSEST-SLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLK 340
++ +++I A + P +LN Q+I +L LG+ F + Q++ ++ L + + +
Sbjct: 644 PTDDLYNIEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQLQQDEISFLYSTFSSIER 703
Query: 341 AHEALE---LMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQ 397
A LE + S +L L G + +PFL +++ L +L+ R RI +
Sbjct: 704 AANFLEESPVPRSLRLPWLLLVLKSLGIRYSQDPFLQRVMELTMLLRLRDLKYRARIRVP 763
Query: 398 NGRAMMGCLDETGTLESGQVF-VQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCL 456
N + G +DETG L+ +++ V + + RRE L V VV+ ++P L
Sbjct: 764 NAVTLYGIMDETGYLKENEIYCVYLAENGRREIL-------------VRDNVVITRSPAL 810
Query: 457 HPGDMRVLRAVDVPS---LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP 513
HPGD++V AVDVP+ L + +CV F G R + SG DLDGD+Y + +D L+P
Sbjct: 811 HPGDVQVANAVDVPANSPLRKLHNCVAFSQFGTRDLPSMLSGGDLDGDLYNIIYDTRLLP 870
Query: 514 PLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSN 573
F P DY A K L R + ED+ ++F ++ D LG I H AD
Sbjct: 871 QKTFSPADYPRAEAKELDRKVETEDIIDFFVTFMQQDQLGRIAITHQAIADQSERGTLDG 930
Query: 574 QCLELAKLSTIAVDFSKTGVAA---TIPSGLRVEIYPDFM-----------------EKQ 613
CL LA+L + AVD+SK+G+A +IP RV PDFM EK+
Sbjct: 931 VCLTLARLHSTAVDYSKSGIAVDVMSIPKAPRVR--PDFMAPSPRIRVEDSIESILREKE 988
Query: 614 DKT--------------CYESQRVIGKLYRAVKDIA-----PPTATIKSFTKEVAMQSY- 653
Y+S ++G+LYR++ + + + + + ++S
Sbjct: 989 STVQDDDDDDNDRAKIRYYKSHNILGRLYRSIDEQSFLHQLRDAGAVDNNNRNSVLKSIW 1048
Query: 654 -DTDMEVDGF-EDYITD-AFKYKTEYDNRLGNLMDYYGIK------TEAEILSGCIMEMA 704
+ EVDGF +++T K Y+++L L+ Y +E E+ G I+
Sbjct: 1049 RYVESEVDGFLWNHLTGICHDIKDIYEDKLRELLHKYSSTPLKSSISEYELFVGTILGHG 1108
Query: 705 KSFDKKRDLEAIIFAVKSLKKEARAWFNKKNE--------SDSSHEDVYAKASAWYHVAY 756
++RD E E R +N+ E ++S + ++ A + VA
Sbjct: 1109 HK-QRRRDKEN--------ANEMRDEYNRLVEFTISMIRDTESGGTEALERSIACFWVAI 1159
Query: 757 HPSYWGRYKEEGMNRTH-----FLSFPW 779
+ G ++ G+ H LSFPW
Sbjct: 1160 NEQSAG--QKAGLRSAHTHQEKLLSFPW 1185
>gi|453081039|gb|EMF09089.1| RdRP-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 1253
Score = 271 bits (693), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 191/630 (30%), Positives = 312/630 (49%), Gaps = 72/630 (11%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
+++V+VTP+ + GPE +NRV+R + DNF+R+ F DED ++ S+
Sbjct: 438 IHRVVVTPTGIRLEGPEPEPTNRVLRLHAQNTDNFVRMVFQDEDGGRVK------FDWSS 491
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA----SRPELTAADI 168
+ +R +ER L GI I K F L FS+S ++ S W A + + A +
Sbjct: 492 DYQR--IYHERFQGILDKGITIAGKSFTFLGFSHSSLRSQSCWFMAPFVKAGSLMFAEKV 549
Query: 169 RESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIG 228
+ +G+F I+ AK AAR+GQ+F + ++ + ++ EV +G + F+DG G
Sbjct: 550 IKELGNFSGIRTPAKCAARIGQNFTDTNTSVRLQRD--QVFELAEVVRNG--HDFADGAG 605
Query: 229 KISAELAEIVAKNCGFT-IYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYKS-- 284
IS L E V K G + P+A QIR+ G KG+VA D +L LR +M KY +
Sbjct: 606 TISKGLLEEVWKVYGTKRMLKPTALQIRFQGAKGMVAQDTRLPGKRLMLRNNMRKYLTGA 665
Query: 285 -ESTSLDILANS-KYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAH 342
+ L+I + + P LNR I +L L + + F Q + + +L + +
Sbjct: 666 DDHMDLEICGAAFRPLPMILNRGFIKILEDLAVPEQSFINLQNKAMERLRMMTQSAINTG 725
Query: 343 EALELMSSGENT---NVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNG 399
L+ + + + + ++++ L G + FL ++ S L +++ R RI + G
Sbjct: 726 TLLDEVHTSKASGLPSLIRYLGQIGLDYHHDDFLYAAVELAVISELRDIKHRGRIPVPKG 785
Query: 400 RAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPG 459
+ G DETG L+ G++FV G+ +V KV++ ++P LHPG
Sbjct: 786 VTLFGVPDETGYLKEGEIFVITERG-----------PTGGKEILVRDKVIITRSPALHPG 834
Query: 460 DMRVLRAVDVP---SLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ 516
D+++ +AVDVP S + + VVF G+R ++ SG DLDGD+Y V WD LIP +
Sbjct: 835 DIQLAKAVDVPPGNSNRQLSNVVVFSKWGQRDLPSKLSGGDLDGDLYNVIWDETLIPWMI 894
Query: 517 FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCL 576
+ P Y P L RD+T +D+ ++F ++ ND LG+I N H+ AD P C+
Sbjct: 895 YAPAQYPRVPPVELPRDVTRKDMSDFFVTFMENDKLGLIANQHLQLADQRPMGTLDPDCI 954
Query: 577 ELAKLSTIAVDFSKTGVAATIPSGLR-VEIYPDFM------------------------- 610
+LA L++ AVD+SKTG+ A + + R + PD+M
Sbjct: 955 KLAALASTAVDYSKTGIPANMGTAPRPAKFKPDYMAPNPRVVFSQEGLLDLEDEDFAPDE 1014
Query: 611 -------EKQDKTCYESQRVIGKLYRAVKD 633
E++ YESQ+V+G LYR++ +
Sbjct: 1015 AFDTIDAERRPMRYYESQKVLGILYRSIDE 1044
>gi|350629963|gb|EHA18336.1| hypothetical protein ASPNIDRAFT_176277 [Aspergillus niger ATCC 1015]
Length = 1152
Score = 271 bits (693), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 195/682 (28%), Positives = 327/682 (47%), Gaps = 83/682 (12%)
Query: 48 DGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSP 107
D L ++KV++TP++V GPE+ NR++R +P+ D F+R+ F DE+ L+
Sbjct: 393 DNLTPIHKVMITPTRVTLHGPELEPRNRILRRFPNHHDYFIRVQFCDENGQDLHFN---- 448
Query: 108 LISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDN---SMWMFASRPELT 164
+ + ++ R L +GI I + + L +S+S ++ + S ++ S T
Sbjct: 449 -----SRIHYDDVFSRFKHVLTHGIQIAGRTYSFLGWSHSSLRSHAFSSPFVDESGQFQT 503
Query: 165 AADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFS 224
I +++GDF I++ A+ AAR+GQ+F + A+ + DIE+ +V FS
Sbjct: 504 HFSIIKALGDFSKIQSPARCAARIGQAFTDTPYAISLSEYDIEVSEMADVTSKDGKRVFS 563
Query: 225 DGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP-TSSTKLSLRKSMLKYK 283
DGIG +S +A+ + + P+ FQ+R GG KG++AVD S +++ +R SM+K++
Sbjct: 564 DGIGTLSWNVAKSIWHHIPEKKGFPTCFQVRLGGAKGMLAVDGRLSGSQVKVRPSMIKFE 623
Query: 284 SESTSLDILA-NSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAH 342
+ L+I A +K LNRQ+I +L +G D F Q + +L ++ +
Sbjct: 624 GDMKDLEICAMAAKPMVLVLNRQMIKILEDMGTPDDWFLTLQEAALTKLRSVTASAHNSE 683
Query: 343 EALELMSSGENTNVLKELLMCGYKPDV----EPFLLMMLQTFRASNLLELRTRTRIFIQN 398
++ + G+ + + C ++ D+ EPF+ +++ L L+ + RI +
Sbjct: 684 VFIKRQAVGDTIGLYRLFRHC-HQRDLDYRKEPFIRSVVEAVVLKELRLLKHKARIPVFK 742
Query: 399 GRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHP 458
G + G +DETG LE+ QV+V R + G V+V ++P LH
Sbjct: 743 GITLFGVMDETGLLEADQVYVTYETIEGRHAPPPNA-----------GMVLVTRSPALHD 791
Query: 459 GDMRVLRAVDVPSLH---HMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPL 515
GD++ + V P H + +C+VF +KG R ++ SG DLDGD++ V WD + P
Sbjct: 792 GDIQFAQNVIPPDNHPLAELTNCIVFSSKGYRDLPSQLSGGDLDGDIFNVIWDTDAYPVR 851
Query: 516 QFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQC 575
F P DY + R + +D+ ++F D++ D LGVI H++ AD E + C
Sbjct: 852 TFAPADYPRVSPVDIGRPVERDDMAQFFLDFMKTDHLGVIATRHMIMADQEAEGTSHPVC 911
Query: 576 LELAKLSTIAVDFSKTGVA---ATIPSGLRVEIYPDFM---------EKQD--------- 614
+LA+L + AVDFSKTG+ + IP G PDFM K D
Sbjct: 912 RKLAQLHSTAVDFSKTGIPVQMSEIPKG--KPFRPDFMAPGPVARIHNKSDIELEEYVIQ 969
Query: 615 ------------KTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGF 662
Y S++++GKLYR V E + D +V
Sbjct: 970 AAYDEDDDMEPFHKYYRSEKILGKLYRGV--------------DERQIWQEDIQSKVQPN 1015
Query: 663 EDYITDAFKYKT-EYDNRLGNL 683
ED + F + T E +++GNL
Sbjct: 1016 EDEFWNEFLWSTLERCDKIGNL 1037
>gi|358397216|gb|EHK46591.1| hypothetical protein TRIATDRAFT_317554 [Trichoderma atroviride IMI
206040]
Length = 1395
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 211/723 (29%), Positives = 349/723 (48%), Gaps = 97/723 (13%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISS 111
++ K +VTP+++ GP+ NRV+R +P+ D F+R+ F DED L +
Sbjct: 555 WILKAMVTPTRITLHGPDAESMNRVLRMFPNHSDYFMRVIFGDEDGQDL---------AL 605
Query: 112 TNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFAS----RPELTAAD 167
T+ ++T ++ER L++GI + +KFE L FS+S ++ +S W A+ L D
Sbjct: 606 TSNVKNTLVFERYRKILKDGIQVAGRKFEFLGFSHSSLRSHSAWFVAAFVDDSMNLQNND 665
Query: 168 -IRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSS--DIEIIPDVEVEDDGITYCFS 224
I +S+GDF DI+ AK AAR+GQ+F + A+ + +IE I DV+ D FS
Sbjct: 666 TIIKSLGDFSDIRIAAKCAARIGQAFSETPYAVPILKCGINIEYIDDVKTADG--KRVFS 723
Query: 225 DGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK-LSLRK-SMLKY 282
DG+G IS + E V + + Q+R GG KG++++D + K + +RK SM+K+
Sbjct: 724 DGVGTISWDAMEEVWDHLPKASSEATCVQVRLGGIKGMLSLDSRLNGKVICVRKESMMKF 783
Query: 283 KSESTSLDILANSKYQP--CFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLK 340
S+ + + ++ +P +LNRQ I +L +G F +Q + + L + T
Sbjct: 784 PSKDQTEMGICDTASKPMRTYLNRQTIKILEDMGTNSEWFIDQQNKALNVLRNVTTTAAN 843
Query: 341 AHEALELMSSGENTNV---LKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQ 397
L+ G + ++ L G E F+ ++ L L+ + RI +
Sbjct: 844 TSTFLKNQMVGTTAGLPRLIRYLSTIGIDYRRERFMKKVVDHTILRELRLLKHKARIPVD 903
Query: 398 NGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGEL--GVVEGKVVVAKNPC 455
G + G +DETG LE GQ++V + S ++ G + + +G V+V ++P
Sbjct: 904 MGVTLFGVMDETGFLEEGQIYVT---------FNESHDHLQGRVKRSLKDGTVLVTRSPA 954
Query: 456 LHPGDMRVLRAVDVPSLH---HMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI 512
LHPGD+++ R P H ++ +CVVF KG R ++ SG DLDGD+Y V WD +I
Sbjct: 955 LHPGDIQLARMTTPPQGHPLRNLKNCVVFSQKGSRDLPSQLSGGDLDGDLYNVFWDPFVI 1014
Query: 513 PPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARS 572
P F P DY L R +T +D+ ++F ++ D LG+I N H + AD + + S
Sbjct: 1015 PKQYFGPADYPRVKPPELDRAVTRDDIADFFVKFMEADILGIIANRHQMLADYQDEGTLS 1074
Query: 573 NQCLELAKLSTIAVDFSKTGVAAT---IPSGLRVEIYPDFM------------------- 610
C++LA++ + AVD+SKTG+A +P R+ PDF+
Sbjct: 1075 ADCVDLAEMHSTAVDYSKTGIAVRHQDMPKPPRMR--PDFLAPAPPTRLFDRGEIDHIGD 1132
Query: 611 --EKQD---------KTCYESQRVIGKLYRAVKD--------------IAPPTATIKSFT 645
E +D Y+S +++G+LYR V + PP S
Sbjct: 1133 PNENEDDEDGMGMAKHKYYKSLKILGELYRGVDEKKIWANDVQRPVDMSGPPLWDQLSIH 1192
Query: 646 KEVAM--QSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIK-----TEAEILSG 698
A+ + Y T +++D + I A+K + Y++ + N M + TE E G
Sbjct: 1193 VRNALWEEGYST-LDID-YRRQIDHAWKIRDLYESSVSNNMWQFSSNPRVPITEVEAFCG 1250
Query: 699 CIM 701
I+
Sbjct: 1251 SIL 1253
>gi|209978362|gb|ACJ04634.1| RNA-dependent RNA polymerase [Cryptococcus neoformans var. grubii]
Length = 1120
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 240/795 (30%), Positives = 375/795 (47%), Gaps = 115/795 (14%)
Query: 50 LIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLI 109
L+ + VLVTP+++ P+ SN V R Y D++D +R+ F DE+ D+L+ L+
Sbjct: 367 LVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEE-DRLFIADYMKLV 425
Query: 110 SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIR 169
S N I RV L+ G+VIG + F +A S SQ K+++MW F + + ++R
Sbjct: 426 DSINPA--VGIMARVRRALQFGLVIGGETFYPVASSASQQKEHAMW-FINNKVIDGLELR 482
Query: 170 ESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGK 229
MG + VAK+AAR+G F +SR +++ + E +PD+E CF+DG G
Sbjct: 483 NWMGTVHETV-VAKHAARMGLPFSTSR-IVNMKINIGEELPDIERNG----RCFTDGCGI 536
Query: 230 ISAELAEIVA----KNCGFTIYTPSAFQIRYGGYKGVVA--VDPTSSTKLSLRKSMLKYK 283
E+ A + G PSA Q R GG KGV++ S ++ LR SM+K++
Sbjct: 537 AGREVLNQAALALNEKVGINA-QPSAIQFRLGGAKGVLSDWSQLVSEYEIRLRPSMIKFR 595
Query: 284 SESTSLDILANSKYQPCFLNRQLITLLSTLGI-------------------RDHVFEKKQ 324
S+ L+++ +KYQ FLNRQ I ++ G+ +D V+
Sbjct: 596 SDLADLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFKDRVWNNAV 655
Query: 325 REGVAQLDAILTD-PLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRAS 383
E QL A+ D PL +L+ SG N N P LL +
Sbjct: 656 TENDQQLIALCNDFPLA-----QLIRSGFNEN---------------PLLLDVAAIIECR 695
Query: 384 NLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGV 443
L +L+ R R+ + +G ++G DETGTL+ G+VF Q N V
Sbjct: 696 ALQDLKWRARVKLSDGVYLIGIADETGTLKEGEVFCQFQ------------ENDDSPPKV 743
Query: 444 VEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVY 503
V +V+V + P D+R AVD P L H+ + +VF +G R + G DLDGD Y
Sbjct: 744 VVNEVLVCRAPAC---DVRRAWAVDRPELRHLKNVIVFSTQGMRDMPSMLGGGDLDGDDY 800
Query: 504 FVCWDHELIPPLQ-FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVH 562
+ WD + L+ + PMDY AP+ + + +T + + E F Y++ND LG + N H+
Sbjct: 801 TLIWDQRFVQSLKVYDPMDYE-APDPISVKHVTQKHLNENFVQYVLNDVLGQVDNCHLAL 859
Query: 563 ADL-EPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQD-KTCYES 620
+D+ P R CL L+++ +++VDF+KTG AA + LR + +PDFM+K D K YES
Sbjct: 860 SDMYTPFDPR---CLHLSEIHSVSVDFAKTGQAAALDPSLRPKEWPDFMDKDDVKVVYES 916
Query: 621 QRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGF--EDYITDAFK-YKTEYD 677
+ ++GK++R V+ A ++ Y TD + F + + D K K Y+
Sbjct: 917 KGILGKIFRIVQ------ADAHFSPSDLEQMGYPTDPRITRFPLHESLLDRLKPLKASYE 970
Query: 678 NRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDL-------EAIIFAVKSLKKEARAW 730
L M Y + E EI SG + K + RD EA V ++++ A+
Sbjct: 971 RDLQYDMRRYRV-YEPEIPSGIAIR-NKRRKRVRDQNLNEPLREAYNILVNNVRETAQKI 1028
Query: 731 FNKKNESDSSHEDVYAKASAWYHVAY---HPSYW------GRYKE--------EGMNRTH 773
N E ++ + A Y + Y H W G++ E E +
Sbjct: 1029 VN-DFEFKTTLTPMQVVARHCYALTYEEVHVRQWEQALAEGKFGEKPEDDEDSERLRPKP 1087
Query: 774 FLSFPWCIHDKLIEI 788
+SF WC +L++I
Sbjct: 1088 LISFAWCFCQELVQI 1102
>gi|210148496|gb|ACJ09171.1| RNA-dependent RNA polymerase [Cryptococcus neoformans var. grubii]
Length = 1120
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 240/795 (30%), Positives = 375/795 (47%), Gaps = 115/795 (14%)
Query: 50 LIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLI 109
L+ + VLVTP+++ P+ SN V R Y D++D +R+ F DE+ D+L+ L+
Sbjct: 367 LVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEE-DRLFIADYMKLV 425
Query: 110 SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIR 169
S N I RV L+ G+VIG + F +A S SQ K+++MW F + + ++R
Sbjct: 426 DSINPA--VGIMARVRRALQFGLVIGGETFYPVASSASQQKEHAMW-FINNKVIDGLELR 482
Query: 170 ESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGK 229
MG + VAK+AAR+G F +SR +++ + E +PD+E CF+DG G
Sbjct: 483 NWMGTVHETV-VAKHAARMGLPFSTSR-IVNMKINIGEELPDIERN----GRCFTDGCGI 536
Query: 230 ISAELAEIVA----KNCGFTIYTPSAFQIRYGGYKGVVA--VDPTSSTKLSLRKSMLKYK 283
E+ A + G PSA Q R GG KGV++ S ++ LR SM+K++
Sbjct: 537 AGREVLNQAALALNEKVGINA-QPSAIQFRLGGAKGVLSDWSQLVSEYEIRLRPSMIKFR 595
Query: 284 SESTSLDILANSKYQPCFLNRQLITLLSTLGI-------------------RDHVFEKKQ 324
S+ L+++ +KYQ FLNRQ I ++ G+ +D V+
Sbjct: 596 SDLADLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFKDRVWNNAV 655
Query: 325 REGVAQLDAILTD-PLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRAS 383
E QL A+ D PL +L+ SG N N P LL +
Sbjct: 656 TENDQQLIALCNDFPLA-----QLIRSGFNEN---------------PLLLDVAAIIECR 695
Query: 384 NLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGV 443
L +L+ R R+ + +G ++G DETGTL+ G+VF Q N V
Sbjct: 696 ALQDLKWRARVKLSDGVYLIGIADETGTLKEGEVFCQFQ------------ENDDSPPKV 743
Query: 444 VEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVY 503
V +V+V + P D+R AVD P L H+ + +VF +G R + G DLDGD Y
Sbjct: 744 VVNEVLVCRAPAC---DVRRAWAVDRPELRHLKNVIVFSTQGMRDMPSMLGGGDLDGDDY 800
Query: 504 FVCWDHELIPPLQ-FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVH 562
+ WD + L+ + PMDY AP+ + + +T + + E F Y++ND LG + N H+
Sbjct: 801 TLIWDQRFVQSLKVYDPMDYE-APDPISVKHVTQKHLNENFVQYVLNDVLGQVDNCHLAL 859
Query: 563 ADL-EPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQD-KTCYES 620
+D+ P R CL L+++ +++VDF+KTG AA + LR + +PDFM+K D K YES
Sbjct: 860 SDMYTPFDPR---CLHLSEIHSVSVDFAKTGQAAALDPSLRPKEWPDFMDKDDVKVVYES 916
Query: 621 QRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGF--EDYITDAFK-YKTEYD 677
+ ++GK++R V+ A ++ Y TD + F + + D K K Y+
Sbjct: 917 KGILGKIFRIVQ------ADAHFSPSDLEQMGYPTDPRITRFPLHESLLDRLKPLKASYE 970
Query: 678 NRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDL-------EAIIFAVKSLKKEARAW 730
L M Y + E EI SG + K + RD EA V ++++ A+
Sbjct: 971 RDLQYDMRRYRV-YEPEIPSGIAIR-NKRRKRVRDQNLNEPLREAYNILVNNVRETAQKI 1028
Query: 731 FNKKNESDSSHEDVYAKASAWYHVAY---HPSYW------GRYKE--------EGMNRTH 773
N E ++ + A Y + Y H W G++ E E +
Sbjct: 1029 VN-DFEFKTTLTPMQVVARHCYALTYEEVHVRQWEQALAEGKFGEKPEDDEDSERLRPKP 1087
Query: 774 FLSFPWCIHDKLIEI 788
+SF WC +L++I
Sbjct: 1088 LISFAWCFCQELVQI 1102
>gi|405121923|gb|AFR96691.1| hypothetical protein CNAG_03466 [Cryptococcus neoformans var. grubii
H99]
Length = 1120
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 241/795 (30%), Positives = 374/795 (47%), Gaps = 115/795 (14%)
Query: 50 LIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLI 109
L+ + VLVTP+++ P+ SN V R Y D++D +R+ F DE+ D+L+ L+
Sbjct: 367 LVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEE-DRLFIADYMKLV 425
Query: 110 SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIR 169
S N I RV L+ G+VIG + F +A S SQ K+++MW F + + ++R
Sbjct: 426 DSINPA--VGIMARVRRALQFGLVIGGETFYPVASSASQQKEHAMW-FINNKVIDGLELR 482
Query: 170 ESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGK 229
MG + VAK+AAR+G F +SR +++ + E +PD+E CF+DG G
Sbjct: 483 NWMGTVHETV-VAKHAARMGLPFSTSR-IVNMKINIGEELPDIERNG----RCFTDGCGI 536
Query: 230 ISAELAEIVA----KNCGFTIYTPSAFQIRYGGYKGVVA--VDPTSSTKLSLRKSMLKYK 283
E+ A + G PSA Q R GG KGV++ S ++ LR SM+K++
Sbjct: 537 AGREVLNQAALALNEKVGINA-QPSAIQFRLGGAKGVLSDWSQLVSEYEIRLRPSMIKFR 595
Query: 284 SESTSLDILANSKYQPCFLNRQLITLLSTLGI-------------------RDHVFEKKQ 324
S+ L+++ +KYQ FLNRQ I ++ G+ +D V+
Sbjct: 596 SDLADLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFKDRVWNNAV 655
Query: 325 REGVAQLDAILTD-PLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRAS 383
E QL A+ D PL +L+ SG N N P LL +
Sbjct: 656 TENDQQLIALCNDFPLA-----QLIRSGFNEN---------------PLLLDVAAIIECR 695
Query: 384 NLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGV 443
L +L+ R R+ + +G ++G DETGTL+ G+VF Q N V
Sbjct: 696 ALQDLKWRARVKLSDGVYLIGIADETGTLKEGEVFCQFQ------------ENDDSPPKV 743
Query: 444 VEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVY 503
V +V+V + P D+R AVD P L H+ + +VF +G R + G DLDGD Y
Sbjct: 744 VVNEVLVCRAPAC---DVRRAWAVDRPELRHLKNVIVFSTQGMRDMPSMLGGGDLDGDDY 800
Query: 504 FVCWDHELIPPLQ-FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVH 562
+ WD + L+ + PMDY AP+ + + +T + + E F Y++ND LG + N H+
Sbjct: 801 TLIWDQRFVQSLKVYDPMDYE-APDPISVKHVTQKHLNENFVQYVLNDVLGQVDNCHLAL 859
Query: 563 ADL-EPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQD-KTCYES 620
+D+ P R CL L+++ + AVDF+KTG AA + LR + +PDFM+K D K YES
Sbjct: 860 SDMYTPFDPR---CLHLSEIHSTAVDFAKTGQAAALDPSLRPKEWPDFMDKDDVKVVYES 916
Query: 621 QRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGF--EDYITDAFK-YKTEYD 677
+ ++GK++R V+ A ++ Y TD + F + + D K K Y+
Sbjct: 917 KGILGKIFRIVQ------ADAHFSPSDLEQMGYPTDPRITRFPLHESLLDRLKPLKASYE 970
Query: 678 NRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDL-------EAIIFAVKSLKKEARAW 730
L M Y + E EI SG + K + RD EA V ++++ A+
Sbjct: 971 RDLQYDMRRYRV-YEPEIPSGIAIR-NKRRKRVRDQNLNEPLREAYNILVNNVRETAQKI 1028
Query: 731 FNKKNESDSSHEDVYAKASAWYHVAY---HPSYW------GRYKE--------EGMNRTH 773
N E ++ + A Y + Y H W G++ E E +
Sbjct: 1029 VN-DFEFKTTLTPMQVVARHCYALTYEEVHVRQWEQALAEGKFGEKPEDDEDSERLRPKP 1087
Query: 774 FLSFPWCIHDKLIEI 788
+SF WC +L++I
Sbjct: 1088 LISFAWCFCQELVQI 1102
>gi|121716158|ref|XP_001275688.1| rna-dependent rna polymerase [Aspergillus clavatus NRRL 1]
gi|119403845|gb|EAW14262.1| rna-dependent rna polymerase [Aspergillus clavatus NRRL 1]
Length = 1203
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 196/709 (27%), Positives = 344/709 (48%), Gaps = 88/709 (12%)
Query: 50 LIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLI 109
L ++KV++TPS++ GPE NR++R +P+ D F+R+ F DE L+ +
Sbjct: 421 LALIHKVMITPSRITLHGPEPEPFNRILRRFPNHHDYFIRVQFCDEQGGDLHFS------ 474
Query: 110 SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIR 169
+ + ++ R + L NGI I + + L +S+S ++ +S+W +A I
Sbjct: 475 ---SRVTYDEVFSRFKNVLTNGIQIAGRTYYFLGWSHSSLRSHSVWA-------SAVCII 524
Query: 170 ESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI--IPDVEVEDDGITYCFSDGI 227
+++GDF I + A+ AAR+GQ+F + A+ V+ + I I +PD+ DG + FSDG+
Sbjct: 525 KALGDFSKITSPARCAARIGQAFSETPFAIPVEDNTITIEEVPDL-ASKDGQRF-FSDGV 582
Query: 228 GKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP-TSSTKLSLRKSMLKYKSES 286
G +S + E++ N P+ FQIR GG KG++A+D + + + +R SM+K++ E
Sbjct: 583 GSLSLNVLEMIWSNIPPKKGKPTGFQIRLGGAKGMIAIDSRLTGSVIRIRPSMIKFQGEM 642
Query: 287 TSLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL 345
L+I SK P LNRQ+I +L +G+ + F + Q + + L +I +
Sbjct: 643 RDLEICDMASKPIPLVLNRQMIKILEDMGVAEDWFFRLQNQELTYLRSITASAQNTAVFI 702
Query: 346 ELMSSGENTNVLKELLMC-GYKPDVE-PFLLMMLQTFRASNLLELRTRTRIFIQNGRAMM 403
+ + G+ + + C +K + + PFL +++ L L+ + RI + G +
Sbjct: 703 KRQAVGDCIGLFRLFRQCHQWKINYKVPFLRSLVEAVILRELRLLKHKARIPVDKGITLF 762
Query: 404 GCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRV 463
G +DET L+ +V+V + + R + G V+V ++P L+ GD+++
Sbjct: 763 GIIDETEYLQENEVYVTFNTIQGRPVAPPTA-----------GPVLVTRSPALYDGDIQI 811
Query: 464 LRAVDVPSLHHMV---DCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPM 520
P H + +C+VF AKG R ++ SG DLDGD+Y + WD E P F P
Sbjct: 812 CLNTVPPEDHPLRRHRNCIVFSAKGDRDLPSQLSGGDLDGDIYNIIWDPEARPKRTFAPA 871
Query: 521 DYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAK 580
DY + R + + D+ ++F D++ D LGVI H++ AD + C +LA+
Sbjct: 872 DYPRVEPVNIGRLVEVHDMADFFIDFMKTDHLGVIAIRHMIMADQLDEGTSHPDCRKLAQ 931
Query: 581 LSTIAVDFSKTGVAAT---IPSGLRVEIYPDFM-------------------------EK 612
L + AVDFSKTG+ +P G PDF+ ++
Sbjct: 932 LHSTAVDFSKTGIPVQMEHLPRG--NNFRPDFLAPGPQAYMYNKSAIHMDQYIARTEYDE 989
Query: 613 QDKT-----CYESQRVIGKLYRAV--KDIAPPTATIKSFTKEVAMQSYDTDMEV------ 659
D T Y S++++GKLYRA+ + I K+ E+ S + +
Sbjct: 990 DDDTEPPRKYYRSEKILGKLYRAIDERKIWSNDIQCKAAVDELTFWSGFLKLCIKRCGAF 1049
Query: 660 --DGFEDYITDAFKYKTEYDNRLGNLMDYYG---IK--TEAEILSGCIM 701
+ Y+ +A++ + Y++ + + + Y IK +E E+ G +M
Sbjct: 1050 RPSSWRRYMDEAWRIRLAYEDAISSARNNYSDHPIKPLSELEVFIGFVM 1098
>gi|449550827|gb|EMD41791.1| hypothetical protein CERSUDRAFT_147107 [Ceriporiopsis subvermispora
B]
Length = 1211
Score = 270 bits (690), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 203/656 (30%), Positives = 336/656 (51%), Gaps = 69/656 (10%)
Query: 55 KVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNE 114
+++VTP+ GP NRV+R++ D D+FLR++FVDE+ +L + S
Sbjct: 424 RLIVTPTTWSLEGPFPERFNRVIRTHRDNCDSFLRVAFVDEN--RLQYRFDREVDGSE-- 479
Query: 115 ERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAA-----DIR 169
I RV L NGI I + FE LA+S S ++++++W S + + A I
Sbjct: 480 ----FIRRRVKGLLINGITIAGRHFEFLAYSQSALREHAVWFVKSFTDASGACVDAPGII 535
Query: 170 ESMGDF------RDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCF 223
++G+F + I A++AAR+ Q+F ++ ++ V++ +I I+ D+E D F
Sbjct: 536 RTLGNFHVNYDPQLIYCPARWAARVSQAFTATDASVSVEAEEIIILDDIE---DSNRRLF 592
Query: 224 SDGIGKISAELAEIVAKN-CGFTIYT------PSAFQIRYGGYKGVVAVDPTSSTKL-SL 275
+DG+G ISAELA+ + K C P AFQIR+GG KG+++VD T ++ L
Sbjct: 593 TDGVGTISAELAKAIWKELCARRHRNRRRPAYPRAFQIRFGGSKGMLSVDYTLEGRIICL 652
Query: 276 RKSMLKYKSESTSLDILANSKYQPC--FLNRQLITLLSTLGIRDHVFEKKQREGVAQLD- 332
R+SM+K+++ + + +A + +P +LNR LI LL LG+ VF+K Q + V ++
Sbjct: 653 RRSMIKFEAPHSMVVEVARAFDRPGKYYLNRPLIMLLEGLGVPYDVFQKLQDDAVQHVEE 712
Query: 333 --AILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLL-ELR 389
L + E L SS T+V+ L G +P ++ + F +++L EL+
Sbjct: 713 SRGSLETAARLLETHGLGSSFRLTSVMLALHKLGVEPFMQDVFWRQMMDFAVNHVLRELK 772
Query: 390 TRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGV-VEGKV 448
RI + +G ++G D G LE GQ+F + G + +EG
Sbjct: 773 HHARIPVPDGWTLVGVADVHGFLEEGQIFACIIPT-------------DGAAPIYLEGPT 819
Query: 449 VVAKNPCLHPGDMRVLRAVDVP------SLHHMVDCVVFPAKGKRPHTNECSGSDLDGDV 502
+++++P +HPGD++V+ A+ P + + + VVF KG RP + G DLDGDV
Sbjct: 820 LISRSPTIHPGDVQVVHAIGKPPPNSPFAKESLRNTVVFSIKGSRPLPSCLGGGDLDGDV 879
Query: 503 YFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVH 562
Y + EL P + P Y A +K+L R T+ DV ++ A+YI++D+LG+I ++
Sbjct: 880 YNLTTMPELRPRRTYEPASYAAAEKKLLIRPCTMADVADFVAEYIISDTLGIIAINWLII 939
Query: 563 ADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEI-------YPDFMEKQDK 615
AD + R CL LA L + AVD+ K+G + + R++ P+ ++
Sbjct: 940 ADQSVEGIRDPACLLLAALHSDAVDYPKSGRPVPVENIPRLKFRAKPDWNAPETLKGDAV 999
Query: 616 TCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFK 671
YESQR IGKL+R++ P T++ + V Q D +D + +AFK
Sbjct: 1000 EFYESQRAIGKLFRSIN--LPALGTLR---RAVRFQRRHMDGRWANLDD-VLEAFK 1049
>gi|358369173|dbj|GAA85788.1| RNA-directed RNA polymerase (Sad-1) [Aspergillus kawachii IFO 4308]
Length = 745
Score = 270 bits (689), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 190/577 (32%), Positives = 291/577 (50%), Gaps = 49/577 (8%)
Query: 249 PSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLI 307
PSAFQ R GG KG++AV + + + +R+S K+ + L+I+ S+Y LNRQLI
Sbjct: 14 PSAFQFRLGGCKGMLAVSSDAQPQEIHIRESQNKFPTVHNGLEIIRWSQYSMATLNRQLI 73
Query: 308 TLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALE-LMSSGENTNVLKELLMCGYK 366
++STLGI D VF K + + LD + +A E L+ + + T + +++ G++
Sbjct: 74 LVMSTLGIPDEVFHAKLKSMLRALDEAMESDSRAIEVLKKYVDPNQTTLTVSQMVSDGFR 133
Query: 367 PDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLES---------GQV 417
EPF +L +R ++ L+ + +I I NG ++G +DETG L+
Sbjct: 134 RSKEPFFTSILALWRTWHIKYLKEKAKIVIDNGTNLLGVMDETGILKGYFYDKIPKEDAS 193
Query: 418 FVQCSASRRREFLD---NSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHH 474
Q A+ FL S + + V+EG ++A+NP LHPGD+RV+RAV+VP LH
Sbjct: 194 LEQKLAALPEIFLQVPRTSGSEGGAQYEVIEGLCILARNPSLHPGDIRVVRAVNVPELHS 253
Query: 475 MVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQF-PPMDYTPAPEKVLARD 533
+ D VV P G R + CSG DLDGD Y V WD +LI F PM YT + L D
Sbjct: 254 LRDVVVLPQTGDRDIASMCSGGDLDGDDYLVIWDQDLIHKDWFLDPMRYTSNKAQDLDHD 313
Query: 534 MTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGV 593
+T+++V +F Y+ NDSL I +AHV AD D +C+ LA+L + AVD++KTG
Sbjct: 314 VTVDEVTSFFVMYMKNDSLPTIAHAHVAWADQLEDGVNEEKCIRLAQLHSDAVDYNKTGR 373
Query: 594 AATIPSGLRVEIYPDFMEKQDK--TCYESQRVIGKLYRAVK--DIAPPTATIKSFTKEVA 649
A + L+ +P FMEK Y S++++G+LY AV+ D P + E+
Sbjct: 374 PAIMTRNLQPRRWPHFMEKPKPKDQIYCSRKILGQLYDAVERVDFVP--------SLEMP 425
Query: 650 MQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIM---EMAKS 706
+ ++ ED T A K E+D + +M + IKTE E+ S I+ M+K
Sbjct: 426 FDERILNCSIEVSEDLYTFAKNLKNEFDTAMRRIMAQHEIKTEFEVWSTFILNHSHMSKD 485
Query: 707 FDKKRDLEAIIFAVKSLKKEARAWFNKK--NESDSSHEDVYAK-ASAWYHVAY------- 756
+ ++ AI A R F K+ N+ D ++ A A A Y V +
Sbjct: 486 YKFHEEIGAISAA-------HRETFRKQCYNKVDGRTFELLAPLAVAMYRVTHEEMTQAL 538
Query: 757 --HPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIKRG 791
H ++ +N+ +SFPW + L + RG
Sbjct: 539 KKHRENSPPHETPKINQLPLISFPWILPHILGRVARG 575
>gi|326484092|gb|EGE08102.1| RNA-dependent RNA polymerase [Trichophyton equinum CBS 127.97]
Length = 1207
Score = 270 bits (689), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 235/816 (28%), Positives = 376/816 (46%), Gaps = 130/816 (15%)
Query: 51 IYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLIS 110
+ V++ VTP+ +Y SGP NR++R Y D ID F+R+ F+DE D ++ P
Sbjct: 416 VLVHRATVTPAGIYLSGPYAETKNRILRKYLDNIDYFIRVEFLDETGDPVF---FDP--- 469
Query: 111 STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM-----FASRPELTA 165
S N E+ ++R ++ G I ++FE L FS+S ++ + W A+ L A
Sbjct: 470 SANLEQ--IFHQRFAGVMKRGFEIAGREFEFLGFSHSSLRAQTCWFAAPFTTANGDHLNA 527
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI-IPDVEVEDDGITYCFS 224
I ++G F I++ +K AAR+GQ+F + ++ V + + PDV+ D FS
Sbjct: 528 RTIIGNIGYFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVWMKAPDVKRNDR----IFS 583
Query: 225 DGIGKISAELAEIVAKNCGFT-IYTPSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKY 282
DG+G IS +L + P+ FQIR G KG+V++D + L LR+SM+K+
Sbjct: 584 DGVGVISRDLMYRIWNEYALRERVKPTVFQIRIAGAKGMVSLDTRRKGEFLMLRESMVKF 643
Query: 283 KSEST-SLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLK 340
++ +++I A + P +LN Q+I +L LG+ F + Q++ + L + +
Sbjct: 644 PTDDLYNIEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQIQQDEINFLYSTFNSTER 703
Query: 341 AHEALELMSSGENTN------VLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRI 394
A + LE + VLK L G + +PFL +++ L +L+ R RI
Sbjct: 704 AAKFLEDSPVPRSLRLPWLFLVLKGL---GIRYTQDPFLKRVMELTTLLRLRDLKYRARI 760
Query: 395 FIQNGRAMMGCLDETGTLESGQVF-VQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKN 453
+ N + G +DETG L+ +++ V + RRE L V KVV+ ++
Sbjct: 761 RVPNAVTLYGIMDETGYLKENEIYCVYLGENGRREIL-------------VRDKVVITRS 807
Query: 454 PCLHPGDMRVLRAVDVPS---LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHE 510
P LHPGD++V+ AVDVP L + +CV F G R + SG DLDGD+Y + +D
Sbjct: 808 PALHPGDIQVVNAVDVPENSPLRKLHNCVAFSQHGDRDLPSMLSGGDLDGDLYNIIYDTR 867
Query: 511 LIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKA 570
L+P PP +Y K L R + ED+ ++F ++ D LG I H AD
Sbjct: 868 LVPRKTIPPANYPRVEAKELDRKVETEDIVDFFVTFMQQDQLGRIATTHQTIADQSELGT 927
Query: 571 RSNQCLELAKLSTIAVDFSKTGVAA---TIPSGLRVEIYPDFM----------------- 610
CL+LA L ++AVD+SK+G+A +IP RV PDFM
Sbjct: 928 LDQACLKLAHLHSVAVDYSKSGIAVNVLSIPRAPRVR--PDFMAPSPRFRVADSIESIIG 985
Query: 611 -----------------EKQDKTCYESQRVIGKLYRAV---------KDIAPPTATIKSF 644
+++ Y+S ++G+LYR++ +D+ A K+
Sbjct: 986 EKNSAMQDDDDDDEDDSDRRKIRYYKSNNILGRLYRSIDERSFLCQLRDVG--AADTKTN 1043
Query: 645 TKEVAMQSYDTDMEVDGF-EDYITDAFK-YKTEYDNRLGNLMDYYGIK------TEAEIL 696
T + EVDGF ++T F + Y++ L LM Y TE E+
Sbjct: 1044 TDVLRSIWNYVLSEVDGFLWTHLTGIFHDTRDIYEDELRELMRKYSATPLKSSITEYELF 1103
Query: 697 SGCIMEMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNE--------SDSSHEDVYAKA 748
G I+ ++RD K KE R +N+ E ++S + ++
Sbjct: 1104 VGTILGHGNK-QRRRD--------KDNAKEMRDEYNRLVEFTISMIRDTESGGTEALERS 1154
Query: 749 SAWYHVAYHPSYWGRYKEEGMNRTH-----FLSFPW 779
A + VA G ++ G+ H LSFPW
Sbjct: 1155 IACFWVAIDGKSSG--QKPGLRSAHAHQDKLLSFPW 1188
>gi|326476492|gb|EGE00502.1| hypothetical protein TESG_07807 [Trichophyton tonsurans CBS 112818]
Length = 1207
Score = 269 bits (688), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 235/816 (28%), Positives = 376/816 (46%), Gaps = 130/816 (15%)
Query: 51 IYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLIS 110
+ V++ VTP+ +Y SGP NR++R Y D ID F+R+ F+DE D ++ P
Sbjct: 416 VLVHRATVTPAGIYLSGPYAETKNRILRKYLDNIDYFIRVEFLDETGDPVF---FDP--- 469
Query: 111 STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA-----SRPELTA 165
S N E+ ++R ++ G I ++FE L FS+S ++ + W A + L A
Sbjct: 470 SANLEQ--IFHQRFAGVMKRGFEIAGREFEFLGFSHSSLRAQTCWFAAPFTTSNGDHLNA 527
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI-IPDVEVEDDGITYCFS 224
I ++G F I++ +K AAR+GQ+F + ++ V + + PDV+ D FS
Sbjct: 528 RTIIGNIGYFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVWMKAPDVKRNDR----IFS 583
Query: 225 DGIGKISAELAEIVAKNCGFT-IYTPSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKY 282
DG+G IS +L + P+ FQIR G KG+V++D + L LR+SM+K+
Sbjct: 584 DGVGVISRDLMYRIWNEYALRERVKPTVFQIRIAGAKGMVSLDTRRKGEFLMLRESMVKF 643
Query: 283 KSEST-SLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLK 340
++ +++I A + P +LN Q+I +L LG+ F + Q++ + L + +
Sbjct: 644 PTDDLYNIEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQIQQDEINFLYSAFNSTER 703
Query: 341 AHEALELMSSGENTN------VLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRI 394
A + LE + VLK L G + +PFL +++ L +L+ R RI
Sbjct: 704 AAKFLEDSPVPRSLRLPWLFLVLKGL---GIRYTQDPFLKRVMELTTLLRLRDLKYRARI 760
Query: 395 FIQNGRAMMGCLDETGTLESGQVF-VQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKN 453
+ N + G +DETG L+ +++ V + RRE L V KVV+ ++
Sbjct: 761 RVPNAVTLYGIMDETGYLKENEIYCVYLGENGRREIL-------------VRDKVVITRS 807
Query: 454 PCLHPGDMRVLRAVDVPS---LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHE 510
P LHPGD++V+ AVDVP L + +CV F G R + SG DLDGD+Y + +D
Sbjct: 808 PALHPGDIQVVNAVDVPENSPLRKLHNCVAFSQHGDRDLPSMLSGGDLDGDLYNIIYDTR 867
Query: 511 LIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKA 570
L+P PP +Y K L R + ED+ ++F ++ D LG I H AD
Sbjct: 868 LVPRKTIPPANYPRVEAKELDRKVETEDIVDFFVTFMQQDQLGRIATTHQTIADQSELGT 927
Query: 571 RSNQCLELAKLSTIAVDFSKTGVAA---TIPSGLRVEIYPDFM----------------- 610
CL+LA L ++AVD+SK+G+A +IP RV PDFM
Sbjct: 928 LDQACLKLAHLHSVAVDYSKSGIAVNVLSIPRAPRVR--PDFMAPSPRFRVADSIESIIG 985
Query: 611 -----------------EKQDKTCYESQRVIGKLYRAV---------KDIAPPTATIKSF 644
+++ Y+S ++G+LYR++ +D+ A K+
Sbjct: 986 EKNSAMQDDDDDDEDDSDRRKIRYYKSNNILGRLYRSIDERSFLCQLRDVG--AADTKTN 1043
Query: 645 TKEVAMQSYDTDMEVDGF-EDYITDAFK-YKTEYDNRLGNLMDYYGIK------TEAEIL 696
T + EVDGF ++T F + Y++ L LM Y TE E+
Sbjct: 1044 TDVLRSIWNYVLSEVDGFLWTHLTGIFHDTRDIYEDELRELMRKYSATPLKSSITEYELF 1103
Query: 697 SGCIMEMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNE--------SDSSHEDVYAKA 748
G I+ ++RD K KE R +N+ E ++S + ++
Sbjct: 1104 VGTILGHGNK-QRRRD--------KDNAKEMRDEYNRLVEFTISMIRDTESGGTEALERS 1154
Query: 749 SAWYHVAYHPSYWGRYKEEGMNRTH-----FLSFPW 779
A + VA G ++ G+ H LSFPW
Sbjct: 1155 IACFWVAIDGKSSG--QKPGLRSAHAHQDKLLSFPW 1188
>gi|85110327|ref|XP_963405.1| hypothetical protein NCU08435 [Neurospora crassa OR74A]
gi|28881256|emb|CAD70515.1| related to RNA-directed RNA polymerase [Neurospora crassa]
gi|28925084|gb|EAA34169.1| predicted protein [Neurospora crassa OR74A]
Length = 1351
Score = 269 bits (688), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 193/642 (30%), Positives = 327/642 (50%), Gaps = 74/642 (11%)
Query: 49 GLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDED-LDKLYSTVLSP 107
GL + + LVTP+++ GPE+ NR++R +P+ D+FLR+ F +ED D +++ +S
Sbjct: 410 GLTKIYRALVTPTRIELHGPELEAKNRILRKFPEHQDHFLRVQFAEEDGQDLFFNSAVS- 468
Query: 108 LISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA-----SRPE 162
IY+R L NGI +G + + L FS+S ++ +S+W+ A + +
Sbjct: 469 ---------MDAIYQRFKDVLTNGISVGGRVYRFLGFSHSSLRAHSLWLAAPFIYDGKLQ 519
Query: 163 LTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYC 222
L A++I E +GDFR+I + A+ AAR+GQ+F + ++ + I++I +V+ +
Sbjct: 520 L-ASNIIEDLGDFRNIMSPARRAARIGQAFSETPYSVSLYDHGIDVIRQRDVKRN--ERV 576
Query: 223 FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLK 281
FSDG+G IS E++ + + P+ Q+R+ G KG++A+D + ++ +R SM K
Sbjct: 577 FSDGVGIISQGALEVIHREIPESKGYPNCLQVRWAGAKGMLALDARLTGRQICIRDSMEK 636
Query: 282 YKS-ESTSLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPL 339
++S + L+I SK P LNRQ+I +L + F + Q + + +L AI +
Sbjct: 637 FRSRDEEHLEICDMASKPIPLMLNRQMIKILEDMRAPAQWFLELQEKELQRLRAITDNVQ 696
Query: 340 KAHEALELMSSGENTNV---LKEL--LMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRI 394
L+L G++ ++ LK+L + Y+ D FL +++ L L+ + RI
Sbjct: 697 NVATFLKLQCVGDSVHLSQFLKDLDKMNIDYRRD--QFLRGIVEAVVLRELRLLKHKARI 754
Query: 395 FIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNP 454
+ G + G +DETG L G+V+V R F D G VVV ++P
Sbjct: 755 PVPYGVTLFGVMDETGLLREGEVYVTFETVDGR-FKDPPT----------AGPVVVTRSP 803
Query: 455 CLHPGDMRVLRAVDVPSLH---HMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHEL 511
LHPGD+++ P+ H + +C+VF G+R ++ SG DLDGD + V WD +
Sbjct: 804 ALHPGDIQIAHNAIPPAGHPLRELKNCIVFSQNGERDLPSQLSGGDLDGDTFNVIWDQSI 863
Query: 512 IPPLQ-FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKA 570
+ L+ F DY L R++ +D+ ++F +++ D LGVI H++ AD +
Sbjct: 864 VATLRTFAAADYPRVEPLKLNREVESKDMADFFVEFMKADHLGVIAVRHMILADERNEGT 923
Query: 571 RSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIY-PDFM------EKQDKTC------ 617
CL+LA L + AVDFSK+G+ I R +Y PDF+ + DK+
Sbjct: 924 LDADCLKLAALHSKAVDFSKSGIHVDITELPRPPMYRPDFLVNGPDIKIHDKSTIDMEEQ 983
Query: 618 -----------------YESQRVIGKLYRAVKDIAPPTATIK 642
Y+S +++G+L+RAV + T IK
Sbjct: 984 YLRQDDDDGDDTPRYKYYKSDKILGRLFRAVDEKKIWTKNIK 1025
>gi|58269288|ref|XP_571800.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
gi|58269290|ref|XP_571801.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
gi|58269292|ref|XP_571802.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
gi|57228036|gb|AAW44493.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57228037|gb|AAW44494.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57228038|gb|AAW44495.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1120
Score = 269 bits (687), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 242/794 (30%), Positives = 375/794 (47%), Gaps = 113/794 (14%)
Query: 50 LIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLI 109
L+ + VLVTP+++ P+ SN V R Y D++D +R+ F DE+ D+L+ LI
Sbjct: 367 LVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEE-DRLFIADNMKLI 425
Query: 110 SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIR 169
S N I RV L+ G++IG + F +A S SQ K+++MW F + + ++R
Sbjct: 426 DSINPA--VGIMARVRRALQFGLIIGGETFYPVASSASQQKEHAMW-FINNKVIDGLELR 482
Query: 170 ESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGK 229
MG + VAK+AAR+G F +SR +++ + E +PD+E CF+DG G
Sbjct: 483 NWMGTVHETV-VAKHAARMGLPFSTSR-IVNMKINIGEELPDIERNG----RCFTDGCGI 536
Query: 230 ISAELAE--IVAKNCGFTIYT-PSAFQIRYGGYKGVVA--VDPTSSTKLSLRKSMLKYKS 284
E+ +A N I + PSA Q R GG KGV++ + ++ LR SM+K+KS
Sbjct: 537 AGREVLNQAALALNEKVGINSQPSAIQFRLGGAKGVLSDWSQLVNEYEIRLRPSMIKFKS 596
Query: 285 ESTSLDILANSKYQPCFLNRQLITLLSTLGI-------------------RDHVFEKKQR 325
+ L+++ +KYQ FLNRQ I ++ G+ +D V+
Sbjct: 597 DLADLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFKDRVWNNAVT 656
Query: 326 EGVAQLDAILTD-PLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASN 384
E QL A+ D PL +L+ SG N N P LL +
Sbjct: 657 ENDQQLIALCNDFPLA-----QLIKSGFNEN---------------PLLLDVAAIIECRA 696
Query: 385 LLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVV 444
L +L+ R R+ + +G ++G DETGTL+ G+VF Q N +V
Sbjct: 697 LQDLKWRARVKLLDGVYLIGIADETGTLKEGEVFCQFQ------------ENDESPPKIV 744
Query: 445 EGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYF 504
+V+V + P D+R AVD P L H+ + +VF +G R + G DLDGD Y
Sbjct: 745 VNEVLVCRAPAC---DVRRAWAVDNPELRHLKNVIVFSTQGMRDMPSMLGGGDLDGDDYT 801
Query: 505 VCWDHELIPPLQ-FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHA 563
+ WD + L+ + PMDY AP+ + + +T + + E F YI+ND LG + N H+ +
Sbjct: 802 LIWDQRFVQSLKVYDPMDYE-APDPISVKHVTQKHLNENFVQYILNDVLGQVDNCHLALS 860
Query: 564 DL-EPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQD-KTCYESQ 621
D+ P R CL L+++ + AVDF+KTG AA + LR + +PDFM+K D K YES
Sbjct: 861 DMYTPFDPR---CLHLSEIHSTAVDFAKTGQAAALDPSLRPKEWPDFMDKDDVKVVYEST 917
Query: 622 RVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGF--EDYITDAFK-YKTEYDN 678
++GK++R V+ A ++ Y TD + F + + D K K Y+
Sbjct: 918 GILGKIFRIVQ------ADAHFSPSDLEQMGYPTDPRITRFPLHESLLDRLKPLKASYER 971
Query: 679 RLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDL-------EAIIFAVKSLKKEARAWF 731
L M Y + E EI SG + K + RD EA V ++++ A+
Sbjct: 972 DLQYDMRRYRV-YEPEIPSGIAIR-NKRRKRVRDQNLNEPLREAYNLLVNNVRETAQKIV 1029
Query: 732 NKKNESDSSHEDVYAKASAWYHVAY---HPSYW------GRYKE--------EGMNRTHF 774
N E ++ + A Y + Y H W G++ E E +
Sbjct: 1030 N-DFEFKTTLTPMQVVARHCYALTYEEVHVRQWEQALAEGKFGEKPEDDEDSERLRPKPL 1088
Query: 775 LSFPWCIHDKLIEI 788
+SF WC +L++I
Sbjct: 1089 ISFAWCFCQELVQI 1102
>gi|171683804|ref|XP_001906844.1| hypothetical protein [Podospora anserina S mat+]
gi|170941862|emb|CAP67515.1| unnamed protein product [Podospora anserina S mat+]
Length = 1230
Score = 268 bits (686), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 176/561 (31%), Positives = 293/561 (52%), Gaps = 40/561 (7%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
+ +V ++P ++ GPE+ NR++R + + + F R+ DE+ L + +P IS
Sbjct: 443 IFRVSISPMRITLHGPELETKNRILRKFDGKANFFFRVQLCDENGQDL---LFNPTISLD 499
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM---FASRPELTAAD-I 168
T+Y R S LR GI + ++++ L FS+S ++ +S+W F +L + I
Sbjct: 500 ------TVYSRFKSILRKGIAVAGRQYKFLGFSHSSLRAHSLWFSAPFYHEGKLQIPEHI 553
Query: 169 RESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI--IPDVEVEDDGITYCFSDG 226
E +GDF I++ A+ AAR+GQ+F + ++ + + ++ IPDVE FSDG
Sbjct: 554 IEQLGDFAPIRSPARCAARIGQAFTETPYSVSLVDNGVQTSEIPDVERNG----RVFSDG 609
Query: 227 IGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP-TSSTKLSLRKSMLKYKS- 284
+G +S + AE + + P+ FQIR+ G KG++++D +++ +R SM K++S
Sbjct: 610 VGVLSPQAAEAIHDAIPESKGEPTCFQIRWAGAKGMLSLDTELEGSQICIRPSMKKFESP 669
Query: 285 ESTSLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHE 343
+ +LDI SK P LNRQ+I +L + F + QR+ V L AI
Sbjct: 670 DEANLDICDMASKPIPMMLNRQMIKILEDMDAPPWWFLELQRKEVNHLRAITRTVSSTAS 729
Query: 344 ALELMSSGENT---NVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGR 400
L + GE+ ++L++ G + FL +++ + ++ + RI + G
Sbjct: 730 FLAMKDIGESIRLPHLLRQTEAMGVDYHQDLFLRSVVEMALLKEIKLIKHKARIPVPKGI 789
Query: 401 AMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGD 460
+ G +DETG L+ GQV+V + R C KVV+ ++P LHPGD
Sbjct: 790 TLFGVMDETGFLQEGQVYVSFDTMQGRYHEPPECQ-----------KVVITRSPALHPGD 838
Query: 461 MRVLRAVDVPSLHHMV---DCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ- 516
+++ V P H ++ +CVVF +G R + SG DLDGD+Y + WD ++ ++
Sbjct: 839 IQLAHHVIPPEGHPLLELRNCVVFSQRGDRDLPSMLSGGDLDGDIYNIIWDEAIVSQVRS 898
Query: 517 FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCL 576
F P DY P L R + +D+ ++F D+I D LGVI H++ ADL P R + C+
Sbjct: 899 FSPADYPRLPIVELGRKVEADDMIDFFVDFISQDCLGVIATRHMILADLAPQGTRDSDCV 958
Query: 577 ELAKLSTIAVDFSKTGVAATI 597
+LA+L + AVDFSKTG A +
Sbjct: 959 KLAELHSQAVDFSKTGRAVNL 979
>gi|320593975|gb|EFX06378.1| RNA-dependent RNA polymerase [Grosmannia clavigera kw1407]
Length = 1259
Score = 268 bits (686), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 196/657 (29%), Positives = 327/657 (49%), Gaps = 67/657 (10%)
Query: 26 EEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEID 85
E + R R L SP+ + L + +V VTP+++ GPE NRV+R +P++ D
Sbjct: 374 EREIRSGYAIREGLLSPS----ENLAPICRVSVTPTRILLYGPEFEKKNRVLRKFPNQHD 429
Query: 86 NFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFS 145
F+R+ F DE+ D L L T+ E+ +Y+R + ++NGI I + ++ L +S
Sbjct: 430 CFIRVQFCDENGDSLRL-----LGRRTSYEK---VYKRFIDIMKNGIQIVGRTYKFLGWS 481
Query: 146 NSQVKDNSMWMFASRPELTAA-----DIRESMGDFRDIKNVAKYAARLGQSFGSSREALH 200
+S ++ +SMW A + T I ++GDF I++ AK AAR+GQ+F + A+
Sbjct: 482 HSSLRAHSMWFTAPFIDDTGRLQTHLTIISTLGDFAGIRSPAKCAARIGQAFSETPYAVP 541
Query: 201 VDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYK 260
+ I ++ +V+ + FSDG+G IS + A V K + P+ FQ+RY G K
Sbjct: 542 LSEHKISVMLVDDVKSKDGKHVFSDGVGTISLDAAAAVWKYVPKSKRNPTCFQVRYAGAK 601
Query: 261 GVVAVDP-TSSTKLSLRKSMLKYKS-ESTSLDILANSKYQPCFLNRQLITLLSTLGIRDH 318
G++++D +++ LR SM+K++S E+ +L+I +K P +LNRQ+I +L + +
Sbjct: 602 GMLSLDTRLQGSQILLRPSMIKFESNETENLEICDVAKAMPLYLNRQMIKILEDMSVPRK 661
Query: 319 VFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPD---VEPFLLM 375
F + Q + + QL I + L+ S G + + K LL+ EPFL
Sbjct: 662 WFLRLQNDALQQLRLIASSAYNMAYFLKHQSVGTSIKLHKLLLLTDKLGLDYRTEPFLRR 721
Query: 376 MLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCN 435
+ L L+ + RI + G + G +DET L GQV+V ++ L
Sbjct: 722 AAEAVVLRELRLLKHKARIPVPFGITLFGVMDETEFLAKGQVYVTFET---KQGLKPQRF 778
Query: 436 NRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLH---HMVDCVVFPAKGKRPHTNE 492
+ V ++V ++P LHPGD++ + P H + +CVVF AKG R ++
Sbjct: 779 EQPPGHAVY---LLVTRSPALHPGDIQWACNMIPPEGHPLRELSNCVVFSAKGARDLPSQ 835
Query: 493 CSGSDLDGDVYFVCWDHELIPPLQ---FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVN 549
SG DLDGD++ + WD E+ P++ + +Y P + + R++ ED+ ++F D++
Sbjct: 836 LSGGDLDGDIFNLIWDREVCRPVELKTYRAAEYARVPPQNIWREVQTEDIAQFFIDFMKT 895
Query: 550 DSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIY-PD 608
D LG I H++ AD + + C+ +A+L + AVDFSKTG+ A + R + PD
Sbjct: 896 DHLGTIATRHMILADQKEMGTLDSDCIAMAELHSTAVDFSKTGIPADLNELRRASPFRPD 955
Query: 609 FM-----------------------------EKQDKTC---YESQRVIGKLYRAVKD 633
F+ E D Y S++V+G LYRAV +
Sbjct: 956 FLAPGSLVYVHNKADIELEKYVANNERDVHAEALDGPAHKYYRSEKVLGVLYRAVDE 1012
>gi|321261399|ref|XP_003195419.1| hypothetical protein CGB_G5150C [Cryptococcus gattii WM276]
gi|317461892|gb|ADV23632.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 1120
Score = 268 bits (685), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 233/778 (29%), Positives = 379/778 (48%), Gaps = 81/778 (10%)
Query: 50 LIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLI 109
L+ + VLVTP+++ P+ SN V R Y D++D +R+ F DE+ D+L+ L+
Sbjct: 367 LVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEE-DRLFIADYMKLV 425
Query: 110 SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIR 169
S N I RV L+ G++IG + F +A S SQ K+++MW F + + ++R
Sbjct: 426 DSINPA--VGIMARVRRALQFGLIIGGETFYPVASSASQQKEHAMW-FINNKIIDGLELR 482
Query: 170 ESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGK 229
MG + VAK+AAR+G F +SR +++ + E +PD+E CF+DG G
Sbjct: 483 NWMGTVHETV-VAKHAARMGLPFSTSR-IVNMKINIGEELPDIERN----GRCFTDGCGI 536
Query: 230 ISAEL--AEIVAKNCGFTIYT-PSAFQIRYGGYKGVVA--VDPTSSTKLSLRKSMLKYKS 284
E+ +A N F I PSA Q R GG KGV++ + ++ LR SM+K++S
Sbjct: 537 AGREVLNQAALALNEKFGINAQPSAIQFRLGGAKGVLSDWSQLVNEYEIRLRPSMIKFRS 596
Query: 285 ESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQL----DAILTDPLK 340
+ L+++ +KYQ FLNRQ I ++ G+ + + +A + D + + +
Sbjct: 597 DLADLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFRDRVWNNAIT 656
Query: 341 AHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGR 400
++ E + + N L +L+ G+ + P +L + L +L+ R R+ + +G
Sbjct: 657 END--EQLIALCNDFPLAQLIKSGFSEN--PLVLDVAAIIECRALQDLKWRARVKLSDGV 712
Query: 401 AMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGD 460
++G DETGTL+ G++F Q N VV +V+V + P D
Sbjct: 713 YLIGIADETGTLKEGEIFCQFQ------------ENDESPPKVVVNEVLVCRAPAC---D 757
Query: 461 MRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ-FPP 519
+R AVD P L H+ + +VF +G R + G DLDGD Y + WD + L+ + P
Sbjct: 758 VRRAWAVDRPELRHLKNVIVFSTQGMRDMPSMLGGGDLDGDDYTLIWDQRFVQSLKVYDP 817
Query: 520 MDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADL-EPDKARSNQCLEL 578
MDY AP+ + + +T + + E F Y++ND LG + N H+ +D+ P R CL L
Sbjct: 818 MDYE-APDPISVKHVTQKHLNENFVQYVLNDVLGQVDNCHLALSDMYTPFDPR---CLHL 873
Query: 579 AKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQD-KTCYESQRVIGKLYRAVKDIAPP 637
+++ + AVDF+KTG AA + LR + +PDFM+K D K YES+ ++GK++R V+
Sbjct: 874 SEIHSTAVDFAKTGQAAALDPSLRPKEWPDFMDKDDVKVVYESKGILGKIFRIVQ----- 928
Query: 638 TATIKSFTKEVAMQSYDTDMEVDGF--EDYITDAFK-YKTEYDNRLGNLMDYYGIKTEAE 694
A ++ Y TD + F + + D K K Y+ L M Y + E E
Sbjct: 929 -ADAHFSPSDLEQMGYPTDPRIIRFPLHESLLDRLKPLKASYERDLQYDMRRYRV-YEPE 986
Query: 695 ILSGCIMEMAKSFDKKRDL-------EAIIFAVKSLKKEARAWFNKKNESDSSHEDVYAK 747
I SG + K + RD EA V ++++ A+ N E ++ +
Sbjct: 987 IPSGIAIR-NKRRKRVRDQNLNEPLREAYNILVNNVRETAQKIVN-DFEFKTTLTPMQVV 1044
Query: 748 ASAWYHVAY---HPSYW------GRYKE--------EGMNRTHFLSFPWCIHDKLIEI 788
A Y + Y H W G++ E E + +SF WC +LI+I
Sbjct: 1045 ARHCYALTYEEVHVRQWEQALAEGKFGEKPEDDEDSERLRPKPLISFAWCFCQELIQI 1102
>gi|302510543|ref|XP_003017223.1| hypothetical protein ARB_04100 [Arthroderma benhamiae CBS 112371]
gi|291180794|gb|EFE36578.1| hypothetical protein ARB_04100 [Arthroderma benhamiae CBS 112371]
Length = 1233
Score = 268 bits (684), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 190/583 (32%), Positives = 298/583 (51%), Gaps = 53/583 (9%)
Query: 51 IYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLIS 110
+ V++ VTP+ +Y SGP NR++R Y D ID F+R+ F+DE D ++ P
Sbjct: 416 VLVHRATVTPAGIYLSGPYAETKNRILRKYLDNIDYFIRVEFLDETGDPVF---FDP--- 469
Query: 111 STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA-----SRPELTA 165
S N E+ ++R ++ GI I ++FE L FS+S ++ + W A + L A
Sbjct: 470 SANLEQ--IFHQRFAGVMKRGIEIAGREFEFLGFSHSSLRAQTCWFAAPFTTANGDYLNA 527
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI-IPDVEVEDDGITYCFS 224
I ++G F I++ +K AAR+GQ+F + ++ V + + PDV+ D FS
Sbjct: 528 RTIIGNIGYFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVWMRAPDVKRNDR----IFS 583
Query: 225 DGIGKISAELAEIVAKNCGFT-IYTPSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKY 282
DG+G IS +L + P+ FQIR G KG+V++D + L LR+SM+K+
Sbjct: 584 DGVGVISCDLMHRIWNEYALRERVKPTVFQIRIAGAKGMVSLDTRRKGEFLMLRESMVKF 643
Query: 283 KSEST-SLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLK 340
++ +++I A + P +LN Q+I +L LG+ F + QR+ + L + + +
Sbjct: 644 PTDDLYNIEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQLQRDEINFLYSTFSSTER 703
Query: 341 AHEALELMSSGENTN------VLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRI 394
A + LE + VLK L G + +PFL +++ L +L+ R RI
Sbjct: 704 AAKFLEDSPVPRSLRLPWLFLVLKGL---GIRYTQDPFLKRVMELTTLLRLRDLKYRARI 760
Query: 395 FIQNGRAMMGCLDETGTLESGQVF-VQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKN 453
+ N + G +DETG L+ +++ V + RRE L V VV+ ++
Sbjct: 761 RVPNAVTLYGIMDETGYLKENEIYCVYLGENGRREIL-------------VRDNVVITRS 807
Query: 454 PCLHPGDMRVLRAVDVPS---LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHE 510
P LHPGD++V+ AVDVP+ L + +CV F G R + SG DLDGD+Y + +D
Sbjct: 808 PALHPGDIQVVNAVDVPANSPLRKLHNCVAFSQHGDRDLPSMLSGGDLDGDLYNIIYDTR 867
Query: 511 LIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKA 570
L+P PP DY K L R + ED+ ++F ++ D LG I H AD
Sbjct: 868 LVPRKTIPPADYPRVEAKELDRKVETEDIIDFFVTFMQQDQLGRIATTHQTIADQSEFGT 927
Query: 571 RSNQCLELAKLSTIAVDFSKTGVAA---TIPSGLRVEIYPDFM 610
CL+LA L ++AVD+SK+G+A +IP RV PDFM
Sbjct: 928 LDQACLKLAHLHSVAVDYSKSGIAVNVLSIPRAPRVR--PDFM 968
>gi|258569467|ref|XP_002543537.1| predicted protein [Uncinocarpus reesii 1704]
gi|237903807|gb|EEP78208.1| predicted protein [Uncinocarpus reesii 1704]
Length = 1004
Score = 267 bits (683), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 177/585 (30%), Positives = 296/585 (50%), Gaps = 62/585 (10%)
Query: 51 IYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLIS 110
+ VN+ VTPS +Y GP I NRV+R Y + I++FLR+ FVDE D++Y + L
Sbjct: 429 VKVNRTQVTPSGIYLYGPNIETKNRVLRQYDNHINHFLRVEFVDEHGDRVYYDPQASL-- 486
Query: 111 STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA-----SRPELTA 165
EE Y+R L+NGI IG ++F L FS+S ++ + W A +
Sbjct: 487 ---EE---IFYQRFKGVLKNGIQIGGRRFSFLGFSHSSLRSQTCWFVAPFITNTGERFDV 540
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSD 225
I + +G F I + +K AAR+GQ+F ++ ++ + D + +++ +G FSD
Sbjct: 541 ESIIQGLGSFDHIYSPSKLAARIGQTFSETQSSIKI-PEDAVYFDEPDIKRNG--RVFSD 597
Query: 226 GIGKISAELAEIVAKNCGFT-IYTPSAFQIRYGG----------------------YKGV 262
G+G +S + + K P+ FQIR+ G KG+
Sbjct: 598 GVGTMSPSIMYKIWKEYALRERVKPTIFQIRFAGNSLPSTFPCYPTANTVFCIILGAKGM 657
Query: 263 VAVDP-TSSTKLSLRKSMLKYKSEST-SLDILAN-SKYQPCFLNRQLITLLSTLGIRDHV 319
V++D +L LR+SM+K+K++ +++I + ++ P +LN QLI +L LG+R
Sbjct: 658 VSLDSRLKGDQLKLRESMIKFKAKGAFNIEICGSGTRALPFYLNAQLIKVLEDLGVRPSA 717
Query: 320 FEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNV---LKELLMCGYKPDVEPFLLMM 376
F Q + + +L ++ +KA + LE + + + ++ + D +PFL +
Sbjct: 718 FIDLQTDEIDRLRSVEKSVIKAGQFLEQTNIAQGVRLPWLIQVIRGLELHHDQDPFLRSV 777
Query: 377 LQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQ-CSASRRREFLDNSCN 435
+Q + +L+ R RI + N + G +DE+G L+ G++F + RE L
Sbjct: 778 IQLAVFLKMRDLKYRARIRVPNAVTLYGIMDESGYLKEGEIFCTFLTEGGVREIL----- 832
Query: 436 NRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS---LHHMVDCVVFPAKGKRPHTNE 492
V +++V ++P LHPGD++ AVDVP+ L + +CVVF G+R +
Sbjct: 833 --------VRDRIIVTRSPALHPGDVQFANAVDVPATSPLRKLHNCVVFSQHGQRDLPSM 884
Query: 493 CSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSL 552
SG DLDGD+Y + +D L+P P DY EK+L R + +D+ ++F ++ D L
Sbjct: 885 LSGGDLDGDLYNIIYDERLMPRRTIEPADYPRVEEKLLNRRVVRDDIIDFFVTFMEQDQL 944
Query: 553 GVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATI 597
G I H AD + + CL LA+L + AVDFSK+G+ ++
Sbjct: 945 GRIATIHQALADQKIEGTLDQDCLLLAELHSTAVDFSKSGIPVSV 989
>gi|74830367|emb|CAI39056.1| RNA-dependent RNA polymerase [Paramecium tetraurelia]
Length = 1367
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 183/631 (29%), Positives = 325/631 (51%), Gaps = 76/631 (12%)
Query: 50 LIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLI 109
L+Y +V +TPS + + + +++ ++R + + ++ FLR+ + DE+ D + + P I
Sbjct: 521 LVYTRRVSMTPSGILYFNKQPEVTSGILRQHYNIVEYFLRVHYEDENQDMVLNI---PYI 577
Query: 110 SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMF-ASRPELTAADI 168
+ T Y + TL+ ++G + FE +S+S ++ + W + DI
Sbjct: 578 T------QTYYYNFMFPTLK---ILG-QHFELFTWSSSSLRAGTCWFIDFNGAGKQRTDI 627
Query: 169 RESMGDFRDIK--NVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDG 226
+S+G+F ++K +AK AARLGQ+ +S V +I I D+ +++ + ++DG
Sbjct: 628 IKSIGNFTNLKYDEIAKNAARLGQNLSTSISVDCVGGINILIKDDLVDKNNKL---YTDG 684
Query: 227 IGKISAELAEIVAK----NCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLK 281
IGKIS +L + + + N I SA QIRY G KG++ +D + K + LR+SM+K
Sbjct: 685 IGKISQDLIDQIRQKMRVNSKIKI---SAIQIRYEGAKGLLVLDESLEQKTIVLRRSMIK 741
Query: 282 Y---KSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDP 338
Y K + IL +K++ +LNRQ+I LL TL + + F++ Q E + +++ +
Sbjct: 742 YNPAKGYPNKIQILDFNKFRGGYLNRQIIILLLTLQVNEKAFQELQDEYLKKIEDLQMKD 801
Query: 339 LKAHEALELMSSGENTNV------LKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRT 392
++ + E ++ L+ + G + ++ +L + LL+LR +T
Sbjct: 802 ASIYKYFSVDYCDEQIDLPNIMDALRAYINIGMEDNI--LCQGVLSKLKQRGLLQLRKKT 859
Query: 393 RIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAK 452
I ++ ++G +DE L+ +++ + + N+ E ++G+V+V +
Sbjct: 860 SILVEKAARVLGVIDEHNLLQPNEIYC---------LVQDENNDTQVEPENIQGEVLVTR 910
Query: 453 NPCLHPGDMRVLRAVDVPSL----------HHMVDCVVFPAKGKRPHTNECSGSDLDGDV 502
NPCLHPGD++ L A+ + +++C+VFPA G + +G DLDGD+
Sbjct: 911 NPCLHPGDIKKLNAISTQEILKRNGSKNPYSQLINCLVFPACGNSLPC-QIAGGDLDGDL 969
Query: 503 YFVCWDHELIPPLQFPPMDY-TPAPEKVLARDMTIEDVEEYFAD---------------- 545
YF+CWD+ L+PP+Q M Y P +V + + + + F +
Sbjct: 970 YFICWDNRLLPPVQAKSMVYDNKKPNQVQYKKIDFRENNQRFHENVDKNFDTKNMFDFLY 1029
Query: 546 -YIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVE 604
Y+ +++LG+I N+H+ AD KA CLELA+L + AVDF KTG + L +
Sbjct: 1030 FYLNSETLGLIDNSHLAWADKSDKKANDPNCLELAELHSDAVDFVKTGKQVFLDVKLLSK 1089
Query: 605 IYPDFMEKQDKTCYESQRVIGKLYRAVKDIA 635
I+PD+MEK+ YESQ +IGKLYR V +
Sbjct: 1090 IFPDYMEKEQSVTYESQTIIGKLYRQVAQMG 1120
>gi|145498970|ref|XP_001435471.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402604|emb|CAK68074.1| unnamed protein product [Paramecium tetraurelia]
Length = 1343
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 183/631 (29%), Positives = 325/631 (51%), Gaps = 76/631 (12%)
Query: 50 LIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLI 109
L+Y +V +TPS + + + +++ ++R + + ++ FLR+ + DE+ D + + P I
Sbjct: 497 LVYTRRVSMTPSGILYFNKQPEVTSGILRQHYNIVEYFLRVHYEDENQDMVLNI---PYI 553
Query: 110 SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMF-ASRPELTAADI 168
+ T Y + TL+ ++G + FE +S+S ++ + W + DI
Sbjct: 554 T------QTYYYNFMFPTLK---ILG-QHFELFTWSSSSLRAGTCWFIDFNGAGKQRTDI 603
Query: 169 RESMGDFRDIK--NVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDG 226
+S+G+F ++K +AK AARLGQ+ +S V +I I D+ +++ + ++DG
Sbjct: 604 IKSIGNFTNLKYDEIAKNAARLGQNLSTSISVDCVGGINILIKDDLVDKNNKL---YTDG 660
Query: 227 IGKISAELAEIVAK----NCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLK 281
IGKIS +L + + + N I SA QIRY G KG++ +D + K + LR+SM+K
Sbjct: 661 IGKISQDLIDQIRQKMRVNSKIKI---SAIQIRYEGAKGLLVLDESLEQKTIVLRRSMIK 717
Query: 282 Y---KSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDP 338
Y K + IL +K++ +LNRQ+I LL TL + + F++ Q E + +++ +
Sbjct: 718 YNPAKGYPNKIQILDFNKFRGGYLNRQIIILLLTLQVNEKAFQELQDEYLKKIEDLQMKD 777
Query: 339 LKAHEALELMSSGENTNV------LKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRT 392
++ + E ++ L+ + G + ++ +L + LL+LR +T
Sbjct: 778 ASIYKYFSVDYCDEQIDLPNIMDALRAYINIGMEDNI--LCQGVLSKLKQRGLLQLRKKT 835
Query: 393 RIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAK 452
I ++ ++G +DE L+ +++ + + N+ E ++G+V+V +
Sbjct: 836 SILVEKAARVLGVIDEHNLLQPNEIYC---------LVQDENNDTQVEPENIQGEVLVTR 886
Query: 453 NPCLHPGDMRVLRAVDVPSL----------HHMVDCVVFPAKGKRPHTNECSGSDLDGDV 502
NPCLHPGD++ L A+ + +++C+VFPA G + +G DLDGD+
Sbjct: 887 NPCLHPGDIKKLNAISTQEILKRNGSKNPYSQLINCLVFPACGNSLPC-QIAGGDLDGDL 945
Query: 503 YFVCWDHELIPPLQFPPMDY-TPAPEKVLARDMTIEDVEEYFAD---------------- 545
YF+CWD+ L+PP+Q M Y P +V + + + + F +
Sbjct: 946 YFICWDNRLLPPVQAKSMVYDNKKPNQVQYKKIDFRENNQRFHENVDKNFDTKNMFDFLY 1005
Query: 546 -YIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVE 604
Y+ +++LG+I N+H+ AD KA CLELA+L + AVDF KTG + L +
Sbjct: 1006 FYLNSETLGLIDNSHLAWADKSDKKANDPNCLELAELHSDAVDFVKTGKQVFLDVKLLSK 1065
Query: 605 IYPDFMEKQDKTCYESQRVIGKLYRAVKDIA 635
I+PD+MEK+ YESQ +IGKLYR V +
Sbjct: 1066 IFPDYMEKEQSVTYESQTIIGKLYRQVAQMG 1096
>gi|327295881|ref|XP_003232635.1| hypothetical protein TERG_06627 [Trichophyton rubrum CBS 118892]
gi|326464946|gb|EGD90399.1| hypothetical protein TERG_06627 [Trichophyton rubrum CBS 118892]
Length = 1207
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 229/814 (28%), Positives = 372/814 (45%), Gaps = 126/814 (15%)
Query: 51 IYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLIS 110
+ V++ VTP+ +Y SGP NR++R Y D ID F+R+ F+DE D P+
Sbjct: 416 VLVHRATVTPAGIYLSGPYAETKNRILRKYLDNIDYFIRVEFLDETGD--------PVFF 467
Query: 111 STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPE-----LTA 165
+ ++R ++ GI I + FE L FS+S ++ + W A L A
Sbjct: 468 DPHANLEPIFHQRFAGVMKRGIEIAGRGFEFLGFSHSSLRAQTCWFAAPFTTADGDYLNA 527
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI-IPDVEVEDDGITYCFS 224
I ++G F I++ +K AAR+GQ+F + ++ V + + PDV+ D FS
Sbjct: 528 RTIIGNIGYFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVWMRAPDVKRNDR----IFS 583
Query: 225 DGIGKISAELAEIVAKNCGFT-IYTPSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKY 282
DG+G +S +L + P+ FQIR G KG+V++D + L LR+SM+K+
Sbjct: 584 DGVGVMSRDLMYRIWNEYALREKVKPTVFQIRIAGAKGMVSLDTRRKGEFLMLRESMVKF 643
Query: 283 KSEST-SLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLK 340
++ +++I A + P +LN Q+I +L LG+ F + Q++ + L + +
Sbjct: 644 PTDDLYNIEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQLQQDEINFLYSTFNSTER 703
Query: 341 AHEALELMSSGENTN------VLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRI 394
A + LE + VLK L G + +PFL +++ L +L+ R RI
Sbjct: 704 AAKFLEDSPVPRSLRLPWLFLVLKGL---GIRYTRDPFLKRVMELTTLLRLRDLKYRARI 760
Query: 395 FIQNGRAMMGCLDETGTLESGQVF-VQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKN 453
+ N + G +DETG L+ +++ V + RRE L V VV+ ++
Sbjct: 761 RVPNAVTLYGIMDETGYLKENEIYCVYLGENGRREIL-------------VRDNVVITRS 807
Query: 454 PCLHPGDMRVLRAVDVPS---LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHE 510
P LHPGD++V+ AVDVP+ L + +CV F G R + SG DLDGD+Y + +D
Sbjct: 808 PALHPGDIQVVNAVDVPANSPLRKLHNCVAFSQHGDRDLPSMLSGGDLDGDLYNIIYDTR 867
Query: 511 LIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKA 570
LIP PP +Y K L R + ED+ ++F ++ D LG I H AD
Sbjct: 868 LIPRKTIPPANYPRVEAKELDRKVETEDIIDFFVTFMQQDQLGRIATTHQTIADQSEFGT 927
Query: 571 RSNQCLELAKLSTIAVDFSKTGVAA---TIPSGLRVEIYPDFMEKQDK------------ 615
CL+LA L ++AVD+SK+G+A +IP RV PDFM + +
Sbjct: 928 LDQACLKLAHLHSVAVDYSKSGIAVDVLSIPRAPRVR--PDFMAQSPRFRVADSIESIIG 985
Query: 616 ----------------------TCYESQRVIGKLYRAVKDIA-----PPTATIKSFTKEV 648
Y+S ++G+LYR++ + + + + T
Sbjct: 986 EKKSTMQEDDDEDEDDSDRRRIRYYKSNNILGRLYRSIDERSFLCQLRDAGAVDTNTNTN 1045
Query: 649 AMQSYDTDM--EVDGF-EDYITDAFK-YKTEYDNRLGNLMDYYGIK------TEAEILSG 698
++S + EVDGF ++T F + Y++ L LM Y +E E+ G
Sbjct: 1046 VLRSIWNYVLSEVDGFLWTHLTGIFHDTRDIYEDELRELMRKYSATPLKSSISEYELFVG 1105
Query: 699 CIMEMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNE--------SDSSHEDVYAKASA 750
I+ ++RD K KE R +N+ E ++S + ++ A
Sbjct: 1106 TILGHGHK-QRRRD--------KDNAKEMRDEYNRLVEFTISMIRDTESGGTEALERSIA 1156
Query: 751 WYHVAYHPSYWGRYKEEGMNRTH-----FLSFPW 779
+ VA + G ++ G+ H LSFPW
Sbjct: 1157 CFWVAINGKSSG--QKPGLRSAHAHQEKLLSFPW 1188
>gi|239614149|gb|EEQ91136.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis ER-3]
Length = 1701
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 193/607 (31%), Positives = 310/607 (51%), Gaps = 63/607 (10%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDED-LDKLYSTVLSPLIS 110
Y+ VTPS + + P + SNRV R + + D FLR+ F DE + K+Y +
Sbjct: 888 YIRSADVTPSTICYDIPSVDTSNRVFRYHREHADRFLRVRFCDEKYIGKIYPN------N 941
Query: 111 STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRE 170
S N + +Y RVL TL++GI IGD+++E LAF NSQ++++ + FAS P LTAA+IR
Sbjct: 942 SGNSQCMEKVYARVLRTLQHGITIGDRRYEFLAFGNSQLREHGAYFFASLPHLTAANIRA 1001
Query: 171 SMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKI 230
MGD +I+ VAKYAARLGQ F ++R V S ++I ++E +G Y FSDG+G++
Sbjct: 1002 QMGDLNNIRVVAKYAARLGQCFSTTRA---VTSCPVQIKKIDDIERNG--YVFSDGVGRL 1056
Query: 231 SAELAEIVAKNCGFTIYT---PSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSES 286
S L +++ + G + PS FQ R GG KG++AV P + + + +R+S K+ +
Sbjct: 1057 SHFLTQMIQSDLGIKTPSGEPPSVFQFRLGGCKGILAVSPEARQREVHIRRSQFKFPASH 1116
Query: 287 TSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALE 346
L+I+ S + LNRQLI +LS LG D VF K +A L+ +TD KA L+
Sbjct: 1117 NGLEIIRYSHFSYATLNRQLILILSALGTPDEVFIAKLSMMLANLEQAMTDEDKAVSLLQ 1176
Query: 347 -LMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGC 405
+ + T VL +++ G++ EPF+ +L+ +R + L+ + +I I G ++GC
Sbjct: 1177 KYVDPNQMTLVLADMIRDGFQGSREPFVSSLLELWRTWQIKYLKEKAKIAIDEGAFLLGC 1236
Query: 406 LDETGTLE----SGQVFVQCSASRR----REFLDNSCNNRSGELGVVEGKVVVAKNPCLH 457
+DET TL+ S + + R E + G+ V+EG ++A+NP LH
Sbjct: 1237 IDETKTLKGYFRSARPKANSTYQERVDCLPEIFVQVWRHSEGKYAVIEGLCILARNPSLH 1296
Query: 458 PGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNE---CSGSDLDGDVYFVCWDHELIPP 514
PGD+RV++A+ F + +RP ++ SG ++D + V D +
Sbjct: 1297 PGDIRVVKAIQ------------FLSPEERPQFDKRILKSGIEVDEKLLSVATDLK---- 1340
Query: 515 LQFPPMDYTPAPEKVLARDMTIEDVE----------EYFADYIVNDSLGVICNA-HVVHA 563
M Y +++AR ++E E DY ++ +G I +A +
Sbjct: 1341 -----MQYDTDMRRIMARHEIETELEVWSTFVLSHSEMSNDYKFHEDIGRISSALREKFS 1395
Query: 564 DLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTC---YES 620
L +KA N LA L+ + + A + V I + MEK+ +
Sbjct: 1396 TLCQEKAGGNDFEHLAPLAVAMYKVTSEQMEAAMAEKSAVLIENNKMEKRLPLISFPWVL 1455
Query: 621 QRVIGKL 627
Q+V+GK+
Sbjct: 1456 QQVLGKI 1462
>gi|115436872|ref|XP_001217666.1| predicted protein [Aspergillus terreus NIH2624]
gi|114188481|gb|EAU30181.1| predicted protein [Aspergillus terreus NIH2624]
Length = 1039
Score = 266 bits (681), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 194/653 (29%), Positives = 324/653 (49%), Gaps = 77/653 (11%)
Query: 30 RKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLR 89
R+ + R S + L + +++V V+P+++ F GPE NRV+R +P F+R
Sbjct: 365 REAKMERTTQKSVSADLSSDHVLIHRVSVSPARITFHGPEREPQNRVIRKFPRHHAYFIR 424
Query: 90 LSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQV 149
+ F DE L+ +P + + I++R + L GI I + + L FS+S +
Sbjct: 425 VQFCDERGSDLF---FNP------KHDYEQIFQRFRTVLTLGIQIAGRTYTFLGFSHSSL 475
Query: 150 KDNSMWMFASRPEL-------TAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVD 202
+ +S+W S P + T++ I +++G+F I + A+ AAR+GQ+F + L V
Sbjct: 476 RSHSVWF--SSPFIDGDGSLQTSSSIIKALGNFSGITSPARCAARIGQAFTETPFTLPVQ 533
Query: 203 SSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGV 262
+ +E I D+ D+ + FSDGIG IS E+ E + K TP+ FQ+R GG KG+
Sbjct: 534 NVVVEYIEDITSSDE--SRVFSDGIGTISLEVVERIWKGIPQKKGTPTCFQVRLGGAKGM 591
Query: 263 VAVDP-TSSTKLSLRKSMLKYKSEST-SLDI--LANSKYQPCFLNRQLITLLSTLGIRDH 318
+++D + + +R SM+K+ ++ L I +A+ Y P LNRQ++ +L +G+ D
Sbjct: 592 LSLDSRLEGSVIRIRPSMVKFSTDDMRDLGICGMASEPY-PLVLNRQIVKILEDIGVPDD 650
Query: 319 VFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVE----PFLL 374
F Q + + QL I + K L+ ++ + K C Y D++ PFL
Sbjct: 651 WFFGLQNDRLRQLQLISSSADKTATFLKDAKIADSIGLYKLFRWC-YWMDLDYREDPFLR 709
Query: 375 MMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSC 434
+++ L L+ ++RI + G + G +DETG L+ +VF+ D
Sbjct: 710 SIVEAMILRELRLLKHKSRIPVPQGMTLYGIIDETGYLKENEVFIT---------FDTIS 760
Query: 435 NNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMV---DCVVFPAKGKRPHTN 491
+ G G V+V ++P L+ GD++V R V P H + +C++F +G R +
Sbjct: 761 GLYAAPPG--PGPVLVTRSPALYDGDIQVARNVVPPPDHPLARHKNCIIFSQQGARDLPS 818
Query: 492 ECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDS 551
+ SG DLDGD+Y V WD + PP +Y + R +T +D+ +F +++ D
Sbjct: 819 QLSGGDLDGDLYHVIWDPIVAKVHTSPPANYARVVPHDIGRVVTTKDMAYFFVEFMKTDC 878
Query: 552 LGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVA---ATIPSGLRVEIYPD 608
+G+I H++ AD EP+ ++ C LA+L + AVD+SK+GV A IPS R PD
Sbjct: 879 VGIIATRHMILADQEPEGTHASGCKLLAELHSTAVDYSKSGVPVDMAKIPSTGRFR--PD 936
Query: 609 FM---------EKQDKTC-------------------YESQRVIGKLYRAVKD 633
FM K T Y+S R++GKLYRA+ +
Sbjct: 937 FMAPGPLAQVYSKSKITLTELSSHAAYDEDGPSHILYYKSDRILGKLYRAIDE 989
>gi|145547505|ref|XP_001459434.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74830373|emb|CAI39057.1| RNA-dependent RNA polymerase [Paramecium tetraurelia]
gi|124427259|emb|CAK92037.1| unnamed protein product [Paramecium tetraurelia]
Length = 1331
Score = 266 bits (680), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 201/624 (32%), Positives = 333/624 (53%), Gaps = 81/624 (12%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
+ +V +TPS F+ ++ ++R Y +++DNF+RL F DE+L+ ++
Sbjct: 513 IKRVSLTPSGYIFNLKLPEETSEIIRQYYNQLDNFIRLHFEDENLETIHG---------- 562
Query: 113 NEERHTTIYERVL-STLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA-SRPELTAADIRE 170
H I E S L NG+ + ++F L +S SQ++ S W+F +R +++ + +
Sbjct: 563 ----HHYITEYYFKSKLSNGLHLLGEQFRLLTWSASQLRGGSCWIFNYNRAQISRQNFID 618
Query: 171 SMGDFR--DIKNVAKYAARLGQSFGSSREALHVDSSDIEI---IPDVEVEDDGITYCFSD 225
S+G+F ++ VAK AARLGQ+F SS+ +D I + +PD +V D+G Y +D
Sbjct: 619 SIGNFNTLNMDQVAKNAARLGQNFSSSKS---IDLRQIIVKTQVPD-KVGDNGKLY--TD 672
Query: 226 GIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAV-DPTSSTKLSLRKSMLKYK- 283
GIGKIS L E++ +T SA Q+RY G KGV+ + D + LRKSM+K+
Sbjct: 673 GIGKISRNLIEMIR--VEMNNHTISAIQVRYHGAKGVLLLNDDLPDNTIELRKSMIKFNP 730
Query: 284 ------SESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQRE------GVAQL 331
+ T + +L +K++ +LNRQ+I LL TLGI++ VF + QRE ++ +
Sbjct: 731 TLMNDGNYKTMISLLDYNKFRGGYLNRQIIILLVTLGIQEEVFMQLQREYLHKIANLSAV 790
Query: 332 DAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTR 391
D+ + + EL + ++ ++ + ++ +L + L++LRT+
Sbjct: 791 DSSIYNHFLVDYNGELQGLPSIIDNIRMMINANLNENNNHYIKRVLDRLKRRGLMQLRTK 850
Query: 392 TRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVA 451
+ I + ++G +D+ L+ G+V S LD N++ + G+++V
Sbjct: 851 SNILMDQAARVLGVVDDYDILDQGEVVCIVKQS-----LD--VNHK-----YITGEIIVV 898
Query: 452 KNPCLHPGDMRVLRAV---DVPSLHHM-------VDCVVFPAKGKRPHTNECSGSDLDGD 501
+NPCLHPGD+R +RA+ ++ S ++M +C+VFP KG +C G DLDGD
Sbjct: 899 RNPCLHPGDIRKVRALSENEILSRYNMKNPFAEYYNCIVFPCKGNSIPA-DCGGGDLDGD 957
Query: 502 VYFVCWDHELIPPLQFPPMDY--TPAPEKVLARDM------TIED------VEEYFADYI 547
+YFV WD ++IP PM+Y P V+++ + + ED + E+ +Y+
Sbjct: 958 IYFVSWDPKVIPKTTEYPMNYDEEKKPAVVVSKQIQAQGYISAEDFFQENKMIEFLLEYL 1017
Query: 548 VNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYP 607
D LG I N+H+ AD PD A+ +C+ LA+L + AVD+ K G IP+ L + +P
Sbjct: 1018 NFDVLGKIDNSHLAIADGSPDYAKDPKCIRLAELHSAAVDYVKHGNKVEIPNNLVTKRWP 1077
Query: 608 DFMEKQDKTCYESQRVIGKLYRAV 631
DFMEK D YES ++GKLYR V
Sbjct: 1078 DFMEK-DSMVYESTSILGKLYREV 1100
>gi|340517754|gb|EGR47997.1| predicted protein [Trichoderma reesei QM6a]
Length = 1250
Score = 266 bits (679), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 189/606 (31%), Positives = 306/606 (50%), Gaps = 47/606 (7%)
Query: 27 EQYRKYVLSRRFLTSP-AVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEID 85
EQ R+ + R T+P + D +V K +VTP+++ GP+ +NRV+R +P D
Sbjct: 407 EQLRREEDTNR--TAPYGPPIPDSQTWVLKAVVTPTRIMLQGPDAENNNRVLRMFPHHSD 464
Query: 86 NFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFS 145
LR+ F DED L L P + ++ I+ R L++GI + +K+E L FS
Sbjct: 465 YLLRVIFSDEDGQDL---ALFPSVDNS------AIFGRYRKVLKDGIQVAGRKYEFLGFS 515
Query: 146 NSQVKDNSMWM---FASRPEL-TAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHV 201
+S ++ +S W F +L I S+GDF +I+ AK AAR+GQ+F + A+ +
Sbjct: 516 HSSLRSHSAWFCAPFIDNMQLHNNESIINSLGDFSEIRIPAKCAARIGQAFSETPYAVDI 575
Query: 202 DSSDIEI--IPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGY 259
I I IPDV+ D + FSDG G IS + E + ++ T TP+ Q+R GG
Sbjct: 576 LKCGIGIKYIPDVKTADG--SRVFSDGCGTISWDAIEEIWEHLPMT-STPTCLQVRLGGI 632
Query: 260 KGVVAVDPTSSTK-LSLRK-SMLKYKSESTSLDILANSKYQPC--FLNRQLITLLSTLGI 315
KG++++D K + +RK SM+K+ S ++ + ++ +P LNRQ+I +L +G
Sbjct: 633 KGMLSLDSRLKGKVICIRKESMMKFSSSDQTMLGICDTASKPLRFVLNRQIIKILEDMGT 692
Query: 316 RDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNV---LKELLMCGYKPDVEPF 372
F +Q + + L + + LE G + +K L G + F
Sbjct: 693 NAEWFIDQQNKALDVLRNVTATAVNTSTFLEYQLVGTTVGLPKLIKYLSKIGVDYRRDNF 752
Query: 373 LLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDN 432
+ ++ L L+ + RI + G + G +DETG LE G+++V D
Sbjct: 753 MKTVVDHTILEELRLLKHKARIPVDQGVTLFGIMDETGFLEEGEIYVT---------FDQ 803
Query: 433 SCNNRSGEL--GVVEGKVVVAKNPCLHPGDMRVLRAVDVPS---LHHMVDCVVFPAKGKR 487
+ G + + +G V++ ++P LHPGD++ + P LH + +CVVF KG R
Sbjct: 804 QYDKVQGRVKHSLKDGLVLITRSPALHPGDIQPAQMRTPPEGHPLHDLKNCVVFSQKGTR 863
Query: 488 PHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYI 547
++ SG DLDGD+Y + WD +IP F Y L R +T +D+ ++F ++
Sbjct: 864 DLPSQLSGGDLDGDLYNIFWDPRVIPKQFFTAASYPRVIPPPLDRAVTRDDIADFFVTFM 923
Query: 548 VNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATI---PSGLRVE 604
D LG+I N H V AD + + +C++LA+L + AVD+SKTG+ T+ P R+
Sbjct: 924 ETDILGMIANRHQVSADAKEEGTLHQECIKLAELHSTAVDYSKTGIPVTVQQLPKAPRMR 983
Query: 605 IYPDFM 610
PDFM
Sbjct: 984 --PDFM 987
>gi|346973013|gb|EGY16465.1| RNA-dependent RNA polymerase [Verticillium dahliae VdLs.17]
Length = 1310
Score = 265 bits (678), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 178/561 (31%), Positives = 289/561 (51%), Gaps = 42/561 (7%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISS 111
+V K VTP+++ GP NR++R +PD + F+R+ F DE+ D ++ LS +S+
Sbjct: 431 WVFKANVTPTRITLHGPAYEPMNRILRKFPDHAEYFMRVQFCDENGDDIF---LSAKVSN 487
Query: 112 TNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTA-----A 166
+ IY R L++GI I + + L FS+S ++ +S W A + T
Sbjct: 488 DH------IYNRFRRVLQSGIQIAGRVYSFLGFSHSSLRSHSAWFSAPFVDKTGQLQSYV 541
Query: 167 DIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDI--EIIPDVEVEDDGITYCFS 224
+I +S+GDF I+ AK AAR+GQ+F + ++ + I + IPDV+ + FS
Sbjct: 542 NIIKSLGDFEHIRIPAKCAARIGQAFSETTSSVSLVDHGIVCQFIPDVKYGNR----VFS 597
Query: 225 DGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK-LSLRK-SMLKY 282
DG+G IS + E + + P+ QIR+GG KG++++D + +++R+ SMLK+
Sbjct: 598 DGVGTISRDALETIWPHLPRMESLPTCLQIRWGGVKGMLSLDSRLPGRVMNIRQESMLKF 657
Query: 283 KSESTSLDIL----ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDP 338
S T LD L A S+ LNRQ+I +L +G+RD F Q+ + +L A+ D
Sbjct: 658 PS--TDLDNLGICGAASRPLRMVLNRQMIKILEDMGVRDEWFFSLQKRELERLRAVTADA 715
Query: 339 LKAHEALELMSSGEN---TNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIF 395
L+L G + +K L G + FL ++ L L+ + RI
Sbjct: 716 WNTGAFLQLQGIGSAFYLSTFIKTLDKYGINYRRDDFLRCTVEAVVLRELRLLKHKARIP 775
Query: 396 IQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPC 455
+ G + G +DETG L G+V+V C SR L + +G ++V ++P
Sbjct: 776 VPQGVTLFGIMDETGFLSEGEVYV-CYDSRYNGSLPIDST-------LSDGNILVTRSPA 827
Query: 456 LHPGDMRVLRAVDVPSLHHMVD---CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI 512
LHPGD++ +R P H + D C+VF G+R ++ SG DLDGD+Y + WD +
Sbjct: 828 LHPGDIQWVRMRTPPVGHPLRDLRNCIVFSQHGERDLPSQLSGGDLDGDLYNIIWDRQAR 887
Query: 513 PPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARS 572
P F P DY L R +T +D+ +F +++ +D LG+I H++ AD + +
Sbjct: 888 PKRFFAPADYPRITPTELNRQVTRDDMAGFFVNFMKSDVLGMIATKHLILADQKEEGTLD 947
Query: 573 NQCLELAKLSTIAVDFSKTGV 593
C+ A++ + AVDFSKTG+
Sbjct: 948 ADCIIFAEMHSTAVDFSKTGI 968
>gi|328874858|gb|EGG23223.1| RNA-directed RNA polymerase [Dictyostelium fasciculatum]
Length = 2645
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 239/786 (30%), Positives = 363/786 (46%), Gaps = 111/786 (14%)
Query: 39 LTSPAVALD---DGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDE 95
L SP +L + + V +TP++ F P + NR +R Y DNFL + FV+E
Sbjct: 1075 LNSPLDSLQATRENYALIKNVYITPTRTLFQKPSMYQLNRALRRYG--ADNFLLVHFVEE 1132
Query: 96 DLDKL--YSTVLSPLISSTNEERHTTIYERVLSTLRNGIVI-GDKKFETLAFSNSQVKDN 152
+LD+ YS + I + L GI+I G +F + S SQ + +
Sbjct: 1133 NLDEKVEYSKFQTKSIENI---------------LLEGIMIEGIGRFHYIGNSASQARSS 1177
Query: 153 SMWMFASRPELTAADIRESMGDFR---DIKNVAKYAARLGQSFGSSREALHVDSSDI-EI 208
S W +R ++ IR + D I N KY LG F + ++ + ++ E
Sbjct: 1178 SCWFTNNRNDIDT--IRNQLVDLSINTGIANPRKYLRSLGLVFSGTTPSIIIPNNQYNEN 1235
Query: 209 IPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT 268
+ DV D+ I F++GIG I LA + F + T S++QIR GG KGVV+V +
Sbjct: 1236 LDDVR-NDEAI---FTEGIGFIGKNLANKINAENSFPLGT-SSYQIRIGGNKGVVSVHHS 1290
Query: 269 SSTKLSLRKSMLKYKSEST----SLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQ 324
+ LR SM K+ + ++ +L+I++ + + C LNRQ+I L LG+ D +F
Sbjct: 1291 IENGIYLRNSMKKFNTNNSEMNRTLEIISIASKKNCTLNRQIINLFGGLGVPDRLFLMLV 1350
Query: 325 REGVAQLDAILTDPLKAHEAL---ELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFR 381
E + +L IL D A L + + E T KELL +P + +L T
Sbjct: 1351 MECLEKLALILQDSSMARSELKNIDFFNQSEPTE--KELLY-------DPLIRRILHTLY 1401
Query: 382 ASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGEL 441
L + I I+N R ++G +DETGTLE QVFV+ +A DN+ E+
Sbjct: 1402 KKQLTKYLDFCFIPIKNARTLLGVIDETGTLEENQVFVRITA-------DNN------EI 1448
Query: 442 GVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGD 501
V++ V V KNPCLHPGD+++ VD LHHM+D VVF KG P ++CSGSDLDGD
Sbjct: 1449 IVIQSNVAVVKNPCLHPGDVQLAMGVDNQLLHHMLDVVVFSQKGTIPLFSKCSGSDLDGD 1508
Query: 502 VYFVCWDHELIPPL-QFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHV 560
YFVC+D +++ + Q P+ +++ + V + F + LG I +H+
Sbjct: 1509 RYFVCFDTDMVNTIVQHKDFCNLPSKSDSTVKEINKDTVIQQFIENTQKGRLGQIALSHL 1568
Query: 561 VHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPS--------GLRVEIYPDFMEK 612
+D + + +ELA VDF KT + T+P G R YP FM+
Sbjct: 1569 AISDYK--SPTDDLAIELAIEHFKEVDFVKTNIHGTVPEQALELTNYGRR---YPMFMKA 1623
Query: 613 Q---DKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDA 669
+K ES +V+GK+Y +++ S + + D + V G+EDY+ DA
Sbjct: 1624 SVGANKEFSESTKVLGKIYNQC-------SSLVSVAQYLPDSRVDESILVSGYEDYVEDA 1676
Query: 670 FKYKTEYDNRLGNLMDYYGIKTEAEILSGCI-MEMAKSFDKKRDLEAIIFAVKSLKKEAR 728
Y + L Y I+ E +I+S + M+ S K +E L R
Sbjct: 1677 RHQFKNYKKEIRYLRSKYNIEKEEDIISSYMDNSMSGSSYSKNIVEDAYNQFSVLAVHYR 1736
Query: 729 AWF-----NKKNESDSSHEDVY--------AKASAWYHVAYHPSYWGRYKEEGMNRTHFL 775
F +K++ S ED+ K SAWY V+Y G K E + L
Sbjct: 1737 DLFLLPFKSKESGGGVSDEDIVIKYRQEIDKKVSAWYFVSY-----GDDKLEKV-----L 1786
Query: 776 SFPWCI 781
SF W +
Sbjct: 1787 SFYWIV 1792
>gi|308458494|ref|XP_003091586.1| hypothetical protein CRE_24272 [Caenorhabditis remanei]
gi|308255699|gb|EFO99651.1| hypothetical protein CRE_24272 [Caenorhabditis remanei]
Length = 1634
Score = 264 bits (674), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 210/744 (28%), Positives = 348/744 (46%), Gaps = 100/744 (13%)
Query: 49 GLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPL 108
G V KV++TP++ + PE ++NR +R + +R + D++L K+ +L L
Sbjct: 443 GYRKVRKVILTPTRKIYLAPEKIMANRAIRGACHDGTRIIRATLRDDNLQKMRFNLLGNL 502
Query: 109 ISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADI 168
E L LR+G I ++ F LA SNSQ+++ + A+
Sbjct: 503 QG-----------EITLGHLRDGFGIMERAFGYLASSNSQMREGGAYFMERYDAEQLAEY 551
Query: 169 RES--------------------MGDFRDIKNVAKYAARLGQSFGSSR--EALHVDSSDI 206
+E +G F D ++ K ARLGQ F +R + + + +D
Sbjct: 552 KEEHPGEPVPHSFKPMIKEYWNVLGKFVDTGSIPKALARLGQCFTQARPIDNVSISPTDY 611
Query: 207 EIIPDV--EVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVA 264
++IPD +G Y ++DG+G ISA LAE + + G + P AFQ R+ G+KG++A
Sbjct: 612 KMIPDAIGGKNTEGKPYMYTDGVGCISAGLAEQIFGSLGIK-HVPCAFQFRFRGFKGMLA 670
Query: 265 VDPT---------------SSTKLSLRKSMLKYKS--ESTSLDILANSKYQPCFLNRQLI 307
+DP K RKS LK++S E ++++ S P LN+ I
Sbjct: 671 IDPNIDHTANHWESLGLRYHRIKCLFRKSQLKFESCQEDEQMEMVKWSSPTPVTLNKPFI 730
Query: 308 TLLSTL-GIRDHVFEKKQREGVAQL--------DAILTDPLKAHEALELM------SSGE 352
+L + G++ K+ V +L A + + K E LE M +S E
Sbjct: 731 NILDQVSGLQSLECHKRVSGRVEELLSMEMDNYSAAVVNEEKCREVLEGMPRRIHFASME 790
Query: 353 NTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQN--GRAMMGCLDETG 410
N G+ EPF +++ S + L + +I I GR+M G DETG
Sbjct: 791 RKN--------GFVLSTEPFFRSLVKATIDSAMSRLLRKLQIPIPGNLGRSMFGITDETG 842
Query: 411 TLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVP 470
L+ GQVFV R E ++ +R + + GKV+V K P L GD+R+ AVD+P
Sbjct: 843 QLQYGQVFV-----RYTENVNEKHPSRHKKTITLTGKVLVTKFPSLCEGDVRMYEAVDIP 897
Query: 471 SLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTP-APEKV 529
LHH+ D +VFP G R +E +GSDLDGD Y V WD +L +Y+ P++
Sbjct: 898 ELHHLQDVIVFPQTGPRSQPDEMAGSDLDGDEYAVIWDPQLFFERNQKAFEYSSEKPDQH 957
Query: 530 LARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFS 589
A + + ++ +Y + +GV H+ +D S+ C +A + +A+D++
Sbjct: 958 FAAEEMDDGFHWFYTEYAKQEDVGVTSINHLHQSD--QFGINSDVCRSIAIKNGMALDYA 1015
Query: 590 KTGVAATIPSGL--------RVEIYPDFMEKQ--DKTCYESQRVIGKLYRAVKDIAPPTA 639
K+GVA + + R E PD+ + Y+S R++G+LYR ++ +
Sbjct: 1016 KSGVAPPPLTSVWSSEGPPERSERRPDYANNRYNGSPSYQSSRLLGQLYRELRCV---ND 1072
Query: 640 TIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGC 699
+K+V + + D + G+E+++ A + T Y+ + ++MD YG+ TEAEI SGC
Sbjct: 1073 VCSEDSKQVPV-AIDPLLTWQGWEEFVDGAHLHMTRYNAEVRSIMDTYGVATEAEIFSGC 1131
Query: 700 IMEMAKSFDKKRDLEAIIFAVKSL 723
E+ +K + I+ +S+
Sbjct: 1132 YREIRNRHSEKEQDDMSIYDTESV 1155
>gi|353235420|emb|CCA67433.1| related to RNA-directed RNA polymerase (RdRP) [Piriformospora
indica DSM 11827]
Length = 1169
Score = 264 bits (674), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 204/634 (32%), Positives = 318/634 (50%), Gaps = 65/634 (10%)
Query: 47 DDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS 106
+ G+ ++ VTPS V +GP +NRV+R Y NF+R+ F +ED +L+
Sbjct: 377 ESGVFECHRATVTPSSVVLTGPLPDETNRVIRKYRAYGHNFIRVDFTEED--RLH----- 429
Query: 107 PLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMF-----ASRP 161
L N + + +R+ ++NG+ + +KFE LA+S+S +K++++W +
Sbjct: 430 -LRKEKNVDLTAILDDRIGEFMKNGLSVAGRKFELLAYSSSALKEHAVWFMTPFTTSDGQ 488
Query: 162 ELTAADIRESMGDF-RDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGIT 220
+T+ IR S+GDF + I A+Y ARL Q+F S+ ++ V +I IPD E D G
Sbjct: 489 YITSESIRRSLGDFSKVIYCPARYGARLSQAFSSTEPSITVRVDEIRFIPDKE-SDYGSL 547
Query: 221 YCFSDGIGKISAELAEIV--------AKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK 272
Y +DG+G IS + A+ + +K + PSAFQIR GG KG++ VD +
Sbjct: 548 Y--TDGVGTISPQAAKEIWHKYTESRSKRNRRRLKRPSAFQIRLGGLKGMLCVDNRLRGR 605
Query: 273 -LSLRKSMLKYKSESTSLDIL-ANSKYQPCFLNRQLITLLSTLG-IRDHVFEKKQREGVA 329
+ +R+SM K+ S+ ++I + FLNR LI LL TL + F Q + V
Sbjct: 606 VICVRESMNKFHSDDREVEIARVFDRPMAMFLNRPLIMLLETLKKVPLEPFMALQTKAVE 665
Query: 330 QLDAILTDPLKAHEALELMSSGEN---TNVLKELLMCGYKPDVE-------PFLLMMLQT 379
+ + A LE G T+V +L G ++ PFL MLQ
Sbjct: 666 ETRDAMKSFDAAARILERYGLGTAFRLTSVFLQLHKLGVSLALKDRSQGLLPFLGRMLQF 725
Query: 380 FRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSG 439
L +L+ + RI + N ++G DE L +++ + G
Sbjct: 726 VENHILRDLKYKARIPVPNAWTLVGVSDEYDYLGENEIYARVRTI-------------DG 772
Query: 440 ELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS------LHHMVDCVVFPAKGKRPHTNEC 493
E +EG V+++++P +HPGD R++ A+ PS L + +CVVFP KG P +C
Sbjct: 773 EEQYLEGPVMISRSPTVHPGDARMVWAIGKPSRGAPPGLEELTNCVVFPCKG-HPSLPQC 831
Query: 494 -SGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSL 552
+G DLDGD+Y + D +L QF DY P L R TI+DV ++ +YI ND L
Sbjct: 832 LAGGDLDGDLYCLVLDPQLHFRWQFQHGDYDPPQLVTLDRPSTIKDVAQFVVNYIKNDLL 891
Query: 553 GVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGV---AATIP---SGLRVEIY 606
G+I ++ AD+ D C++LAKL +IAVD+ KTG ++ IP S R + Y
Sbjct: 892 GIISMQCMLIADVRKDCLADPDCVKLAKLHSIAVDYPKTGRHVESSEIPWLDSRRRPDWY 951
Query: 607 PDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTAT 640
+ + + Y+SQR IG L+RA++ A P A
Sbjct: 952 ANELHNNNPDLYQSQRHIGHLFRAIELPALPEAA 985
>gi|302660624|ref|XP_003021989.1| hypothetical protein TRV_03883 [Trichophyton verrucosum HKI 0517]
gi|291185913|gb|EFE41371.1| hypothetical protein TRV_03883 [Trichophyton verrucosum HKI 0517]
Length = 1233
Score = 263 bits (671), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 238/840 (28%), Positives = 377/840 (44%), Gaps = 152/840 (18%)
Query: 51 IYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLIS 110
+ V++ VTP+ +Y SGP NR++R Y D ID F+R+ F+DE D ++ P
Sbjct: 416 VLVHRATVTPAGIYLSGPYAETKNRILRKYLDNIDYFIRVEFLDETGDPVF---FDP--- 469
Query: 111 STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM-----FASRPELTA 165
S N E+ ++R ++ GI I ++FE L FS+S ++ + W A+ L A
Sbjct: 470 SANLEQ--IFHQRFAGVMKRGIEIAGREFEFLGFSHSSLRAQTCWFAAPFTTANGDYLNA 527
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI-IPDVEVEDDGITYCFS 224
I ++G F I++ +K AAR+GQ+F + ++ V + + PDV+ D FS
Sbjct: 528 RTIIGNIGYFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVWMRAPDVKRNDR----IFS 583
Query: 225 DGIGKISAELAEIVAKNCGFT-IYTPSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKY 282
DG+G IS +L + P+ FQIR G KG+V++D + L LR+SM+K+
Sbjct: 584 DGVGVISRDLMYRIWNEYALREKVKPTVFQIRIAGAKGMVSLDTRRKGEFLMLRESMVKF 643
Query: 283 KSEST-SLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLK 340
++ +++I A + P +LN Q+I +L L + F + Q++ + L + +
Sbjct: 644 PTDDLYNIEICGAGIRALPFYLNNQIIKILEDLEVPFEAFHQLQQDEINFLYSTFNSTER 703
Query: 341 AHEALELMSSGENTN------VLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRI 394
A + LE ++ VLK L G + +PFL +++ L +L+ R RI
Sbjct: 704 AAKFLEDSPVPKSLRLPWLFLVLKGL---GIRYTQDPFLKRVMELTTLLRLRDLKYRARI 760
Query: 395 FIQNGRAMMGCLDETGTLESGQVF-VQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKN 453
+ N + G +DETG L+ +++ RRE L V VV+ ++
Sbjct: 761 RVPNAVTLYGIMDETGYLKENEIYCAYLGGDGRREIL-------------VRDNVVITRS 807
Query: 454 PCLHPGDMRVLRAVDVPS---LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHE 510
P LHPGD++V+ AVDVP+ L + +CV F G R + SG DLDGD+Y + +D
Sbjct: 808 PALHPGDIQVVNAVDVPANSPLRKLHNCVAFSQHGDRDLPSMLSGGDLDGDLYNIIYDTR 867
Query: 511 LIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKA 570
L+P PP DY K L R + ED+ ++F ++ D LG I H AD
Sbjct: 868 LVPRKTIPPADYPRVEAKELDRKVETEDIIDFFVTFMQQDQLGRIATTHQTIADQSEFGT 927
Query: 571 RSNQCLELAKLSTIAVDFSKTGVAA---TIPSGLRVEIYPDFM----------------- 610
CL+LA L ++AVD+SK+G+ +IP RV PDFM
Sbjct: 928 LDQACLKLAHLHSVAVDYSKSGIPVNVFSIPRAPRVR--PDFMAPSPRFRVADSIESIIG 985
Query: 611 EKQDKT-----------------CYESQRVIGKLYRAVK--------------DIAPPTA 639
EK+ Y+S ++G+LYR++ DI T
Sbjct: 986 EKKSTMQDDDDEDEDDSDHRRIRYYKSNNILGRLYRSIDERSFLCQLRDAGAVDINTNTN 1045
Query: 640 TIKSFTKEVAMQS------------YDT-DMEVDGFEDYITDAFK--YKTE------YDN 678
++S V + YDT DM F + D F Y+ + Y++
Sbjct: 1046 VLRSIWNYVLSEVDGFLWTHLKGIFYDTRDMYEPPFTSFFLDMFMDIYRADALGIISYED 1105
Query: 679 RLGNLMDYYGIK------TEAEILSGCIMEMAKSFDKKRDLEAIIFAVKSLKKEARAWFN 732
L LM Y +E E+ G I+ ++RD K KE R +N
Sbjct: 1106 ELRELMRKYSATPLKSSISEYELFVGTILGHGHK-QRRRD--------KDNAKEMRDEYN 1156
Query: 733 KKNE--------SDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTH-----FLSFPW 779
+ E ++S + ++ A + VA G ++ G+ TH LSFPW
Sbjct: 1157 RLVEFTISMIRGTESGGTEALERSIACFWVAIDGK--GSGQKPGVRSTHAHQDKLLSFPW 1214
>gi|403414238|emb|CCM00938.1| predicted protein [Fibroporia radiculosa]
Length = 1215
Score = 262 bits (670), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 196/631 (31%), Positives = 321/631 (50%), Gaps = 66/631 (10%)
Query: 56 VLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEE 115
V+VTP+ +Y GP SNR++R Y D+FLR+SFV+E+ L+ + E
Sbjct: 420 VVVTPTTMYLEGPFPERSNRIMRMYMANQDSFLRVSFVEENR----------LMYRFDRE 469
Query: 116 RHTT--IYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMF-----ASRPELTAADI 168
+ RV L NG+ I + F+ LA+S S +K++++W R ++ AA I
Sbjct: 470 LDARDFVNRRVKHLLLNGLTIAGRHFDFLAYSQSALKEHAVWFVKPFNHTDRRQIDAATI 529
Query: 169 RESMGDFRD-------IKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITY 221
+G F D I A+YAAR+ Q+F ++ ++ V++ ++ IPD+ D TY
Sbjct: 530 ISGLGSFHDLAFDERLIYCPARYAARISQAFTATDSSVSVEAEEVVPIPDIW--DATHTY 587
Query: 222 CFSDGIGKISAELA-----EIVAKNCGFTIYT-PSAFQIRYGGYKGVVAVDPTSSTKL-S 274
F+DG+G IS +LA E+ AK T P A+Q+R+ G KG+++VD +L
Sbjct: 588 SFTDGVGTISPDLAQAIWDELRAKQKRSRHRTKPRAYQVRFMGSKGMLSVDYRLENRLVC 647
Query: 275 LRKSMLKYKSESTSLDILANSKYQPC--FLNRQLITLLSTLGIRDHVFEKKQREGVAQL- 331
LR+SM+K+ + ++ +A + +P +LNR LI LL LG+ F+ Q V
Sbjct: 648 LRESMIKFDAPNSLFIEIARAFDKPGRYYLNRPLIMLLEGLGVPYSTFQALQDAAVQNAQ 707
Query: 332 DAI--LTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLL-EL 388
D++ L+ + EA L +S T+ + L G P E + F +++L EL
Sbjct: 708 DSVESLSSSARLLEAHGLGTSFRLTSTMLSLHRLGLGPLHEDIFWQQMMDFAVNHVLREL 767
Query: 389 RTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKV 448
+ RI + +G ++G D G L G++F C + D+S +EG
Sbjct: 768 KHHARIPVPDGWTLVGVADVHGFLNEGEIFA-CVHPQ-----DSSVPI------YLEGPT 815
Query: 449 VVAKNPCLHPGDMRVLRAVDVP------SLHHMVDCVVFPAKGKRPHTNECSGSDLDGDV 502
+++++P +HPGD++V+ A+ P + + VVF KG RP + G DLDGDV
Sbjct: 816 LISRSPTIHPGDVQVVHAIGPPPPGSPFEKEPLPNTVVFSIKGGRPLPSYLGGGDLDGDV 875
Query: 503 YFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVH 562
Y + + P +PP Y PAP+K + T+ DV E+ A+YI++D+LG+I ++
Sbjct: 876 YNLTTMPSMRPRRTYPPARYDPAPKKFVDHPSTMADVAEFVAEYIISDTLGIIAINWLIT 935
Query: 563 ADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEI-------YPDFMEKQDK 615
AD CL+LA+L + AVD+ K+G+ + R++ P+ + K+
Sbjct: 936 ADQSGLGIFDPDCLKLAQLHSDAVDYPKSGIPVALDQIPRLKRKSKPDWNAPETITKEST 995
Query: 616 TCYESQRVIGKLYRAVKDIAPPTATIKSFTK 646
YES R IG L+RA++ P T+K ++
Sbjct: 996 NWYESTRAIGHLFRAIE--LPALQTVKRASR 1024
>gi|317158412|ref|XP_001826725.2| rna-dependent rna polymerase [Aspergillus oryzae RIB40]
Length = 1206
Score = 261 bits (668), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 207/728 (28%), Positives = 346/728 (47%), Gaps = 115/728 (15%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
V++V VTP+++ GPE+ NR++R +P+ + F+R+ F DE+ + L + +
Sbjct: 397 VHRVNVTPTRITLHGPEMEPQNRILRKFPNHHEYFIRVQFCDENGEDL--------LFNA 448
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPEL-------TA 165
N + + I+ R + + GI I + + L FS+S ++ ++W S P + T
Sbjct: 449 NVD-YKDIFGRFIDIMTRGIQIAGRTYNFLGFSHSSLRSRAVWF--SSPFVDDNGHMQTY 505
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI--IPDVEVEDDGITYCF 223
I ++G F I + A+ AAR+GQ+F + + ++ + + IPD+ D + F
Sbjct: 506 FSIVSAIGKFSHITSPARCAARIGQAFTETPFMVPLEKHGVLVSTIPDLTSPDG--SRVF 563
Query: 224 SDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKY 282
SDG+G IS E+ + + P+ FQIR GG KG++A D T + +R SM+K+
Sbjct: 564 SDGVGAISREVVASIWADIPLKRGNPTCFQIRLGGAKGMLAADSRLRTAVIQIRPSMIKF 623
Query: 283 KSEST-SLDI--LANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPL 339
SE +L+I +A+ Y P LNRQ+I +L +G F + Q E + +L +I
Sbjct: 624 DSEDMKNLEICNMASRPY-PMVLNRQVIKILEDMGASKDWFFQMQNEELTRLQSITVSTD 682
Query: 340 KAHEALELMSSGENTNVLKELLMC-----GYKPDVEPFLLMMLQTFRASNLLELRTRTRI 394
K L+ S E + + C YK D FL +++ L L+ + RI
Sbjct: 683 KTARFLKDKSVAECIGLYRLYRQCYWTRLNYKKD--GFLRAIVEAVVLRELRLLKHKARI 740
Query: 395 FIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNP 454
++ G + G +DETG L+ G+V+V D + G G ++V ++P
Sbjct: 741 PVKKGMTLYGVIDETGFLQEGEVYVT---------FDRMEGRYAAPPG--PGHILVTRSP 789
Query: 455 CLHPGDMRVLRAVDVPSLH---HMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHEL 511
LH GD++ + V P H + +C+VF KG R ++ SG DLDGD+Y V WD EL
Sbjct: 790 ALHCGDIQRAQNVIPPEDHPLRYHRNCIVFSQKGSRDLPSKLSGGDLDGDLYHVIWDPEL 849
Query: 512 IPPLQFPPMDYTPAPEKV-LARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKA 570
F P DY P P + + RD+ ++D+ +F +++ +D LG+I H+V AD
Sbjct: 850 ESVETFAPADY-PRPTSIDIGRDVRVDDMAAFFVEFMRSDILGMIAIRHMVMADQAASGT 908
Query: 571 RSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIY-PDFMEKQDKT------------- 616
R C LA L + AVDFSKTG+ + RV Y PDF+ +T
Sbjct: 909 RDTSCRLLAGLHSKAVDFSKTGIPVNMEDMPRVNRYRPDFLAPGPQTRLYNKSKIGLEQH 968
Query: 617 --------------------CYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTD 656
Y+S++++GKLYRA+ + +S ++ + +TD
Sbjct: 969 VSHANYDDDDDDADVEEPYRYYKSEKILGKLYRAIDE--------QSIWRKHVLSESETD 1020
Query: 657 ME------VDGF------------EDYITDAFKYKTEYDNRLGNLMDYYGIK-----TEA 693
E +D E+++ +A + + YD+ + + MD Y +E
Sbjct: 1021 EEFFWNSVIDDCLRRCKSLPRTPKEEHLDEAKRIRAAYDDAIISAMDTYSDHPTKPISEL 1080
Query: 694 EILSGCIM 701
E++ G I+
Sbjct: 1081 EVVIGSII 1088
>gi|242221257|ref|XP_002476381.1| predicted protein [Postia placenta Mad-698-R]
gi|220724386|gb|EED78433.1| predicted protein [Postia placenta Mad-698-R]
Length = 1141
Score = 261 bits (668), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 226/764 (29%), Positives = 365/764 (47%), Gaps = 95/764 (12%)
Query: 55 KVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNE 114
+V+VTP+ ++ GP+ SNRV R YP + NFLR++FVDE + L+ +
Sbjct: 374 RVIVTPTCLHLEGPDPERSNRVFRRYPGQEQNFLRVTFVDE----------TRLMYRFDR 423
Query: 115 E--RHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFAS-----RPELTAAD 167
E I RV L G+ I + FE LA+S S +K++++W E+ A+
Sbjct: 424 EVDGRGFINRRVRHMLVQGLTIAGRHFEFLAYSQSALKEHAVWFVTPFRDPDGREVRAST 483
Query: 168 IRESMGDFRD------IKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITY 221
I S+G FR I A+YAAR+ Q+F ++ ++ V+ ++ PD++ D+ Y
Sbjct: 484 IIASLGSFRPAFEPQLIYCPARYAARISQAFTATDSSISVELEEVFYDPDIK--DNTGQY 541
Query: 222 CFSDGIGKISAELAEIVAKNCGFT--------IYTPSAFQIRYGGYKGVVAVD-PTSSTK 272
CF+DG+G+IS LA ++ YT FQIR+ G KG+++VD S
Sbjct: 542 CFTDGVGRISPALARAISSELRAKKRRARRARTYT-RLFQIRFMGSKGMLSVDYQLSDRS 600
Query: 273 LSLRKSMLKYKS-ESTSLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQ 330
+ LR SM+K+ + +S +++I A K +LNR LI LL LG+ VFE Q + V
Sbjct: 601 IFLRPSMIKFDAPDSLNVEIAQAFDKPGKYYLNRPLIMLLEGLGVPYEVFEALQDDAVQD 660
Query: 331 LDAI---LTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLL- 386
+ L + EA L +S ++ + + G +P E + F +++L
Sbjct: 661 AEGAVHSLESSARLLEAYGLGASFRLSSTMVNMHRLGLRPLSEDIFWQQMMDFAVNHVLR 720
Query: 387 ELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEG 446
EL+ RI + +G ++G D G LE G++F + E + +EG
Sbjct: 721 ELKHHARIPLPDGWTLVGVADVHGYLEEGEIFACVDSPDLLEPI------------YLEG 768
Query: 447 KVVVAKNPCLHPGDMRVLRAVDVPS----LHH--MVDCVVFPAKGKRPHTNECSGSDLDG 500
V++++P +HPGD++++ A+ P H + + VVF KG+RP + G DLDG
Sbjct: 769 PTVISRSPTIHPGDVQLVHAIGRPPPGSPFEHESLRNGVVFSIKGERPLPSCLGGGDLDG 828
Query: 501 DVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHV 560
DVY V L P + Y PA +K + T+EDV ++ A+YI +D+LG+I +
Sbjct: 829 DVYNVTTMPSLRPARTYRSGSYKPAVKKTVDHPSTMEDVADFVAEYINSDTLGIIAINWL 888
Query: 561 VHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAAT---IPSGLRVEIYPDF-----MEK 612
+ AD + CL LA+L + AVD+ K+G IP L+ + PD+ + +
Sbjct: 889 IIADQSSEGILDPHCLRLAQLHSDAVDYPKSGNPVPLERIPR-LKFKAKPDWNAPETLTR 947
Query: 613 QDKTCYESQRVIGKLYRAVKDIAPPTATIKS-FTKEVAMQSYDTDME--VDGF------E 663
YES R IG+LYR ++ A T T S F + ++ + +DGF E
Sbjct: 948 ATPDFYESTRAIGRLYRRIELPALRTVTRASRFQRRNLEDGHELTLADILDGFQEDNVDE 1007
Query: 664 DYITDAFKYKTEYDNRLGNLMDYYGIK-------TEAEILSGCIMEMAKSFDKKRDL--- 713
D I+ ++ Y +RL + + + TE E + G I+ K++DL
Sbjct: 1008 DVISRLWELFEYYSSRLRTICADHTLSDSRSAMLTEEEAVIGTIVAKCSQPRKRKDLMSQ 1067
Query: 714 --EAIIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVA 755
E V S++ E E D+ E +A Y++A
Sbjct: 1068 LREQTATLVASVRDEI------AGEDDTPSEKSLERAWIAYNIA 1105
>gi|83775472|dbj|BAE65592.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1188
Score = 261 bits (668), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 207/728 (28%), Positives = 346/728 (47%), Gaps = 115/728 (15%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
V++V VTP+++ GPE+ NR++R +P+ + F+R+ F DE+ + L + +
Sbjct: 397 VHRVNVTPTRITLHGPEMEPQNRILRKFPNHHEYFIRVQFCDENGEDL--------LFNA 448
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPEL-------TA 165
N + + I+ R + + GI I + + L FS+S ++ ++W S P + T
Sbjct: 449 NVD-YKDIFGRFIDIMTRGIQIAGRTYNFLGFSHSSLRSRAVWF--SSPFVDDNGHMQTY 505
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI--IPDVEVEDDGITYCF 223
I ++G F I + A+ AAR+GQ+F + + ++ + + IPD+ D + F
Sbjct: 506 FSIVSAIGKFSHITSPARCAARIGQAFTETPFMVPLEKHGVLVSTIPDLTSPDG--SRVF 563
Query: 224 SDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKY 282
SDG+G IS E+ + + P+ FQIR GG KG++A D T + +R SM+K+
Sbjct: 564 SDGVGAISREVVASIWADIPLKRGNPTCFQIRLGGAKGMLAADSRLRTAVIQIRPSMIKF 623
Query: 283 KSEST-SLDI--LANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPL 339
SE +L+I +A+ Y P LNRQ+I +L +G F + Q E + +L +I
Sbjct: 624 DSEDMKNLEICNMASRPY-PMVLNRQVIKILEDMGASKDWFFQMQNEELTRLQSITVSTD 682
Query: 340 KAHEALELMSSGENTNVLKELLMC-----GYKPDVEPFLLMMLQTFRASNLLELRTRTRI 394
K L+ S E + + C YK D FL +++ L L+ + RI
Sbjct: 683 KTARFLKDKSVAECIGLYRLYRQCYWTRLNYKKD--GFLRAIVEAVVLRELRLLKHKARI 740
Query: 395 FIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNP 454
++ G + G +DETG L+ G+V+V D + G G ++V ++P
Sbjct: 741 PVKKGMTLYGVIDETGFLQEGEVYVT---------FDRMEGRYAAPPG--PGHILVTRSP 789
Query: 455 CLHPGDMRVLRAVDVPSLH---HMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHEL 511
LH GD++ + V P H + +C+VF KG R ++ SG DLDGD+Y V WD EL
Sbjct: 790 ALHCGDIQRAQNVIPPEDHPLRYHRNCIVFSQKGSRDLPSKLSGGDLDGDLYHVIWDPEL 849
Query: 512 IPPLQFPPMDYTPAPEKV-LARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKA 570
F P DY P P + + RD+ ++D+ +F +++ +D LG+I H+V AD
Sbjct: 850 ESVETFAPADY-PRPTSIDIGRDVRVDDMAAFFVEFMRSDILGMIAIRHMVMADQAASGT 908
Query: 571 RSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIY-PDFMEKQDKT------------- 616
R C LA L + AVDFSKTG+ + RV Y PDF+ +T
Sbjct: 909 RDTSCRLLAGLHSKAVDFSKTGIPVNMEDMPRVNRYRPDFLAPGPQTRLYNKSKIGLEQH 968
Query: 617 --------------------CYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTD 656
Y+S++++GKLYRA+ + +S ++ + +TD
Sbjct: 969 VSHANYDDDDDDADVEEPYRYYKSEKILGKLYRAIDE--------QSIWRKHVLSESETD 1020
Query: 657 ME------VDGF------------EDYITDAFKYKTEYDNRLGNLMDYYGIK-----TEA 693
E +D E+++ +A + + YD+ + + MD Y +E
Sbjct: 1021 EEFFWNSVIDDCLRRCKSLPRTPKEEHLDEAKRIRAAYDDAIISAMDTYSDHPTKPISEL 1080
Query: 694 EILSGCIM 701
E++ G I+
Sbjct: 1081 EVVIGSII 1088
>gi|403177737|ref|XP_003336185.2| hypothetical protein PGTG_17766 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375173183|gb|EFP91766.2| hypothetical protein PGTG_17766 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1297
Score = 261 bits (666), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 230/805 (28%), Positives = 366/805 (45%), Gaps = 132/805 (16%)
Query: 48 DGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSP 107
+G+ V +TP+ + GP N ++R Y D F+R++ +ED +P
Sbjct: 478 EGIFKCRTVTITPTSLVLDGPCAEQGNSILRFY-DFNSAFIRVALREEDG--------AP 528
Query: 108 LISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM---FASRPEL- 163
N + R L N +++ ++FE L +S S ++ + W F R EL
Sbjct: 529 HRWDRNVDLPEFFSHRY-RPLANCLLLAGRQFEFLCYSASALRSHQAWFVCPFIHRGELI 587
Query: 164 TAADIRESMGDFRDIKNV-AKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYC 222
TA IR +G F + N+ A+Y AR+GQ+F ++R+A+ + S I++I DVE
Sbjct: 588 TATKIRNRIGSFPKVINIPARYMARVGQAFTTTRKAVTLQPSQIKLIEDVERNGS----V 643
Query: 223 FSDGIGKISAELAEIVAKN-CGFTIYTP------SAFQIRYGGYKGVVAVDPTSSTKL-S 274
F+DG+G IS LA+ V G T P S +QIR GGYKG++++D T +
Sbjct: 644 FTDGVGTISLSLAKKVEHALAGPTGSKPPTELQASCYQIRLGGYKGMLSLDTTLEGDIVR 703
Query: 275 LRKSMLKYKSESTSLDILAN-SKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLD- 332
LR SM K++ ES +LDI + P FLNRQLI +L LGI VF Q E VA ++
Sbjct: 704 LRPSMKKFEGESYTLDIAEKFDRPFPAFLNRQLIKILEDLGISGQVFLDAQAETVAMVEN 763
Query: 333 --AILTDPLKAHEALELMSSGENTNVLKEL--LMCGYKPDVE--PFLLMMLQTFRASNLL 386
+ E L S+ E +LK+L LM +P+ F+ L L
Sbjct: 764 SQGSMNQSSLVMERAGLGSAVELPQILKQLGRLMDSDRPEEIRCSFVQDSLDLLAVHCLR 823
Query: 387 ELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEG 446
EL+ TRI + ++G DE G L Q+FV +R++ ++G
Sbjct: 824 ELKYNTRIPLPGSFNLVGVADEDGCLLENQIFVPIQLPGQRKY-------------CLKG 870
Query: 447 KVVVAKNPCLHPGDMRVLRAVDVPS-----LHHMVDCVVFPAKGKRPHTNECSGSDLDGD 501
+ +A++PCLHPGD++V+ A+ P L +V+CVVFP GKR + +G DLDGD
Sbjct: 871 RFAIARSPCLHPGDIQVVYAIGDPPVGSRRLASLVNCVVFPVIGKRSLPSCLAGGDLDGD 930
Query: 502 VYFVCWDHELIPPLQ--FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAH 559
+Y + D +++P + + P Y K TI D ++F YI+++ +G+I N H
Sbjct: 931 LYTIITDPQMVPDSRRIYQPGSYESGQMKTTESPCTIHDGIDFFFHYILDNIVGMIANKH 990
Query: 560 VVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEI-YPDFM-------- 610
+ AD + +CL+LA+L + AVD+ KTG+A + R PDFM
Sbjct: 991 TIIADQADEGVLDRKCLDLAELHSQAVDYPKTGMAVPVTKIPRCSPKRPDFMCPEYMFND 1050
Query: 611 -------EKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEV--------AMQSYDT 655
+Q + Y S +++G+L+RA+ P I ++ K V +S
Sbjct: 1051 HLSDKEKAQQAERTYPSPKILGQLFRAI-----PPEQIHAYQKRVIDRGGMNLIKKSRHI 1105
Query: 656 DMEVDG-----FEDYITDAFKYKT---EYDNRLGNLMDYYGIK----------------- 690
++ DG + + +T ++ + +G LMD + +
Sbjct: 1106 SLDPDGSITWRLRNRLIQEKILRTCGDKWKDEMGRLMDEFLLDIDKISRIDRLHKPSCPE 1165
Query: 691 -----------TEAEILSGCIM----EMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKN 735
TE EIL G I+ +M K+ K +V+ L+ F
Sbjct: 1166 PSTEGNRSEALTEIEILLGLILMDNGKMGKTVKKD--------SVRRLQAHTEQLFGALK 1217
Query: 736 ESDSSHEDVYAKASAWYHVAYHPSY 760
+ S H + +S + A HP +
Sbjct: 1218 SNISRHHLSPSPSSPFTLQALHPGF 1242
>gi|353235419|emb|CCA67432.1| related to RNA-directed RNA polymerase (RdRP) [Piriformospora indica
DSM 11827]
Length = 1186
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 200/632 (31%), Positives = 314/632 (49%), Gaps = 67/632 (10%)
Query: 49 GLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPL 108
G+ ++ +TPS + +GP +NRV+R Y F+R+ F +ED L+ L
Sbjct: 396 GVFECHRATITPSSIILTGPLPDETNRVIRKYRKYAHKFIRIDFTEED--GLH------L 447
Query: 109 ISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMF-----ASRPEL 163
N + + +R+ ++NG+++ ++FE LA+S+S +K++++W + +
Sbjct: 448 RKEKNVDLGAILDDRIGEFMKNGLLVAGRRFEFLAYSSSALKEHAVWFMTPFTTSDGQYV 507
Query: 164 TAADIRESMGDF-RDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYC 222
T+ IR S+GDF + I ++Y ARL Q+F S+ ++ + ++I IPD E D G Y
Sbjct: 508 TSESIRRSLGDFSKVIYCPSRYGARLSQAFSSTEPSITIKVNEIRFIPDKE-SDQGSLY- 565
Query: 223 FSDGIGKISAELAE-IVAK-------NCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKL- 273
+DG+G +S ++AE I AK + TPSAFQIR GG KG++ VD ++
Sbjct: 566 -TDGVGTMSPQVAEEIWAKYTEPRSKRSRRRLKTPSAFQIRLGGLKGMLCVDSRLQGRVV 624
Query: 274 SLRKSMLKYKSESTSLDIL-ANSKYQPCFLNRQLITLLSTLG-IRDHVFEKKQREGVAQL 331
+R SM K+ S ++I A + FLNR LI LL TL + F Q + V +
Sbjct: 625 CVRDSMNKFHSNDREVEIARAFDRPMTMFLNRPLIMLLETLKKVPLEPFMALQTKAVEET 684
Query: 332 DAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVE-----------PFLLMMLQTF 380
+ A LE G L + + +K DV PFL MLQ
Sbjct: 685 RDAMKSFDTAARLLEQYGLGTAFR-LTSVFLQLHKLDVALALKDQSQGLLPFLGRMLQFV 743
Query: 381 RASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGE 440
L +L+ + RI + N ++G DE L +++ + GE
Sbjct: 744 ENHILRDLKYKARIPVPNAWTLVGVSDEYDYLGENEIYARVRTI-------------DGE 790
Query: 441 LGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS------LHHMVDCVVFPAKGKRPHTNEC- 493
+EG V+++++P +HPGD R++ A+ PS L + +CVVFP KG P +C
Sbjct: 791 EQYLEGPVMISRSPTVHPGDARMVWAIGKPSRGAPPGLEDLTNCVVFPCKG-HPSLPQCL 849
Query: 494 SGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLG 553
+G DLDGD+Y + D +L QF DY P L R TI+DV ++ +YI ND LG
Sbjct: 850 AGGDLDGDLYCLVLDPQLHFRWQFQHGDYDPPQLVTLDRPSTIKDVAQFVINYIKNDLLG 909
Query: 554 VICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTG------VAATIPSGLRVEIYP 607
VI ++ AD+ D C++LAKL +IAVD+ KTG ++ S R + +
Sbjct: 910 VISTRSMLIADIREDCLADEDCVKLAKLHSIAVDYPKTGRHVEFEQMPSLESNRRPDWHA 969
Query: 608 DFMEKQDKTCYESQRVIGKLYRAVKDIAPPTA 639
+ + D Y+S R IG L+RA++ A P A
Sbjct: 970 NELNDNDPELYQSNRHIGHLFRAIELPALPEA 1001
>gi|67524519|ref|XP_660321.1| hypothetical protein AN2717.2 [Aspergillus nidulans FGSC A4]
gi|40743829|gb|EAA63015.1| hypothetical protein AN2717.2 [Aspergillus nidulans FGSC A4]
gi|259486372|tpe|CBF84157.1| TPA: RNA-directed RNA polymerase (Sad-1), putative (AFU_orthologue;
AFUA_3G06790) [Aspergillus nidulans FGSC A4]
Length = 1203
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 184/631 (29%), Positives = 311/631 (49%), Gaps = 72/631 (11%)
Query: 50 LIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLI 109
L ++++V+VTPS++ GPE NR++R +P+ + F+R+ F DE+ + +Y +P I
Sbjct: 387 LAHIHRVVVTPSRITLHGPETEPLNRILRRFPNHHEYFIRVQFCDENGEDIY---FNPRI 443
Query: 110 SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAA--- 166
+++ I+ R + NG I + + L FS+S ++ S W A + +
Sbjct: 444 NNS------LIFARFKNVFANGFQIAGRTYTFLGFSHSSLRSRSAWFSAPFIDDDGSLQS 497
Query: 167 --DIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI--IPDVEVEDDGITYC 222
I +++G F +I + A+ AAR+GQ+F + A+++ + I + IPDV+V
Sbjct: 498 YFTIIKAIGRFSEITSPARCAARIGQAFSETPFAVNLKENGIRVLRIPDVQVGGR----V 553
Query: 223 FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP-TSSTKLSLRKSMLK 281
FSDG+G ISA+ +I+ P+ FQIR GG KG++++DP +K+ +R SM K
Sbjct: 554 FSDGVGTISAKAVDIIHGVLPPRNGAPTCFQIRLGGAKGMLSLDPRLRGSKICIRPSMTK 613
Query: 282 YKSE-STSLDILAN-SKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPL 339
++++ +++I + SK P FLNRQ+I +L +G+ F Q + QL
Sbjct: 614 FQTDDQVNVEICGSGSKPIPLFLNRQVIKILEDMGVDREWFMTLQELRIEQLRKATATTK 673
Query: 340 KAHEALELMSSGENTNVLKE-LLMCGYKPDVE--PFLLMMLQTFRASNLLELRTRTRIFI 396
++ S + + + LL K D + PFL +++ L L+ + RI +
Sbjct: 674 NTATFVKGQSVADCVKLYRLFLLFHNLKLDYKKIPFLRAVVEAMVLRELRLLKHKARIPV 733
Query: 397 QNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCL 456
G + G +DETG L +VFV A R +C +++V ++P L
Sbjct: 734 HKGITLYGVMDETGFLNENEVFVTYQAMDRLAAPPQNC------------RLLVTRSPAL 781
Query: 457 HPGDMRVLRAVDVPSLHHMV---DCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP 513
H GD++ V P H + +C+VF KG R ++ SG DLDGD+Y + WD P
Sbjct: 782 HNGDIQYPYNVVPPKGHPLQQQRNCIVFSQKGTRDLPSQLSGGDLDGDLYNIIWDPAAAP 841
Query: 514 PLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSN 573
F P +Y P + R + ED+ +F +++ +D LGVI H++ AD +
Sbjct: 842 KRVFTPANYPRNPPLDIKRVVEREDMANFFVEFMQSDRLGVIATKHMILADQMELGTSHS 901
Query: 574 QCLELAKLSTIAVDFSKTGVAATIPSGLRV-EIYPDFM---------EKQD--------- 614
C +LA+L + AVDFSKTG+ + V PDF+ ++Q+
Sbjct: 902 DCKKLAQLHSTAVDFSKTGIPVRLKEMPFVNRSRPDFLAPGPLAKIHDRQNIQLEARYVH 961
Query: 615 ------------KTCYESQRVIGKLYRAVKD 633
Y S++++GKLYRA+ +
Sbjct: 962 PYPDDDIDFSPVHKYYRSEKILGKLYRAINE 992
>gi|322712330|gb|EFZ03903.1| rna-dependent rna polymerase [Metarhizium anisopliae ARSEF 23]
Length = 1114
Score = 259 bits (662), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 204/756 (26%), Positives = 357/756 (47%), Gaps = 94/756 (12%)
Query: 49 GLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPL 108
G V K LVTP+++ GP++ NRV+R +P + D+FLR++F DED + L
Sbjct: 302 GRALVLKALVTPTRIVLRGPDLETKNRVLRMFPGKSDHFLRVTFGDEDGEDL-------- 353
Query: 109 ISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM---FASRPELTA 165
S + + I+E L G+ + ++FE LAFS+S ++ +S W F + LT
Sbjct: 354 -SYGDRTCNDDIFEHYRRILLRGLTVAGRRFEFLAFSHSSLRSHSAWFCSPFVGQ-SLTV 411
Query: 166 ADIR---ESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYC 222
D R +S+G F++I+ AK AAR+GQ+F + AL + I + +V++ T
Sbjct: 412 QDCRSIVKSLGVFQNIRIPAKCAARIGQAFSETPIALSLSQRGIRLQYIDDVKNSAGTRV 471
Query: 223 FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK-LSLR-KSML 280
FSDG+G IS + + V + P+ QIR G KG++++D K + +R +SM+
Sbjct: 472 FSDGVGTISIDALQEVWDCLPERLGRPTCIQIRIAGVKGMLSLDSQLRGKYICIRSESMM 531
Query: 281 KYKSESTSLDILA----NSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILT 336
K+KS+ LD+L S+ LNRQ++ +L +GI + F Q + + ++ +
Sbjct: 532 KFKSQD--LDVLGICDVGSRPLRFTLNRQIVKILEDMGIHHNWFLAWQDKAIRNFLSVAS 589
Query: 337 DPLKAHEAL---ELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTR 393
L E+ +S ++++L G + FL ++ + L L+ + R
Sbjct: 590 STRHTRAFLRQYEVGTSLRLPELIEKLEENGIDYREDDFLRSVVGQAVLAELRFLKYKAR 649
Query: 394 IFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKN 453
I + + G +DETG L+ GQ++V + + E +G+ +V ++
Sbjct: 650 IPVSKAVTLFGVMDETGFLQEGQIYVTYDVA-------DHLGATGIEAAPAKGRALVTRS 702
Query: 454 PCLHPGDMRVLRAVDVPSLHHMV---DCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHE 510
P LHPGD++ + V P H ++ +C+VF ++G R + SG DLDGD+Y V WD +
Sbjct: 703 PALHPGDIQYVEMVTPPFGHALLELRNCIVFSSQGSRDLPSMLSGGDLDGDLYSVIWDPD 762
Query: 511 LIPPLQFPPMDY---TPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEP 567
IP P +Y +P P K R + ED+ +F D++ ND LG+I H ++ADL+P
Sbjct: 763 AIPTRNLKPAEYPRISPKPNK---RQVRQEDMANFFIDFMKNDVLGIIATRHQMYADLKP 819
Query: 568 DKARSNQCLELAKLSTIAVDFSKTGV---AATIPS---------------GLRVEIYPDF 609
+C+ LA++ + AVD+SK+GV A IP L + +
Sbjct: 820 AGTLDPECIRLAEMHSAAVDYSKSGVPVEAHCIPKVPQARADFLVPAPTLALHLSNDASY 879
Query: 610 MEKQDK--------------TCYESQRVIGKLYRAVKD--------IAPPTATIKSFTKE 647
E+ Y+S +++G+L+R + + A T +
Sbjct: 880 FERLTACISESETSPAQPGFATYQSNKILGRLFREIDEHRIWKESTQAEVTTRTSGGIWD 939
Query: 648 VAMQSYDTDME----VDGFEDYITDAFKYKTEYDNRLGNLMDYYGIK-----TEAEILSG 698
++ ++D+ + +E + A +TEYD L + + + +E E SG
Sbjct: 940 GLLKHVESDLSAVNIILDWETKLATAKNLRTEYDMALAETLRQFSVNPRGQVSEVEAFSG 999
Query: 699 CIMEMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKK 734
+ A ++ + + A + +E AW + +
Sbjct: 1000 RSLNSAGRQSRRHRVYSAKLADR--MEELTAWMSGR 1033
>gi|367053924|ref|XP_003657340.1| hypothetical protein THITE_2147717 [Thielavia terrestris NRRL 8126]
gi|347004606|gb|AEO71004.1| hypothetical protein THITE_2147717 [Thielavia terrestris NRRL 8126]
Length = 1241
Score = 259 bits (662), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 190/646 (29%), Positives = 308/646 (47%), Gaps = 85/646 (13%)
Query: 43 AVALDDGLIY--VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKL 100
A DD I + + VTP+++ GPE+ NRV+R + D F+R F DE+ L
Sbjct: 424 AAIFDDAPIRARIFRATVTPTRITLHGPELEPMNRVLRKFSDH-SYFIRAQFCDENGQDL 482
Query: 101 YSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM---F 157
+ L +++R S L +GI + + ++ L FS+S ++ +S W+ F
Sbjct: 483 FFNAKVSL---------DAVFDRFKSVLTDGIQVAGRVYKLLGFSHSSLRAHSAWLSAPF 533
Query: 158 ASRPELTAAD-IRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVED 216
+ D I +GDF I++ A+ AAR+GQ+F + A+ +D + I+++ +VE
Sbjct: 534 IHEGRVQIPDLIITGLGDFNRIQSPARRAARIGQAFSETPYAVDLDENMIQVLEVPDVER 593
Query: 217 DGITYCFSDGIGKISAELAE----IVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SST 271
+G FSDG+G ISA A+ ++ K+ G+ P+ FQIR+ G KG++++DP
Sbjct: 594 NG--RVFSDGVGTISAGAADAVYNVIPKSKGY----PTCFQIRWAGAKGMLSLDPRLEGN 647
Query: 272 KLSLRKSMLKYKSESTSLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQ 330
K+ +R SM+K++S L+I S+ P LN QLI +L +G D F + Q + +
Sbjct: 648 KICIRPSMVKFESNDRQLEICDMASRPIPMVLNHQLIKILEDMGAPDKWFLELQNRELQR 707
Query: 331 LDAILTDPLKAHEALELMSSGENTNVLKELLMC---GYKPDVEPFLLMMLQTFRASNLLE 387
L A+ + G++ + K LL G + FL ++ + L
Sbjct: 708 LRAVTATVCNTASFVRAKKIGQSIQLHKLLLQTEAMGLDYWQDDFLRTAVEAIVLNELRL 767
Query: 388 LRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGK 447
L+ + RI + G + G +DETG L+ G+V+V A D C G
Sbjct: 768 LKHKARIPVPKGITLFGIMDETGFLDEGEVYVTYDAE------DRYCQPPG------PGP 815
Query: 448 VVVAKNPCLHPGDMRVLRAVDVPSLHHMV---DCVVFPAKGKRPHTNECSGSDLDGDVYF 504
V+VA++P LHPGD++V P H ++ +C++F + G R ++ SG DLDGD +
Sbjct: 816 VIVARSPALHPGDIQVAYNRIPPDGHPLIQQRNCLIFSSWGDRDLPSQLSGGDLDGDQFH 875
Query: 505 VCWDHELIPP-LQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHA 563
V WD +++ + F P Y L R + D+ +F D++ D LGVI H + A
Sbjct: 876 VIWDPQVVASVITFEPAKYDRVSPLELDRPVVSADIAAFFVDFMRTDHLGVIATRHKILA 935
Query: 564 DLEPDKARSNQCLELAKLSTIAVDFSKTGVAA---TIPSGLRVEIYPDFMEKQDKT---- 616
D C+ LA+L + AVDFSKTG A +P L+ PDF+ + +
Sbjct: 936 DQREGGTLDQDCVRLAELHSRAVDFSKTGRAVERWELPQSLKWR--PDFLSRGPEIKIHD 993
Query: 617 -----------------------------CYESQRVIGKLYRAVKD 633
Y S++++GKLYRAV +
Sbjct: 994 ISAIELDQYAASRGDEDVDDVNDEGPQHRYYRSEKILGKLYRAVDE 1039
>gi|296416873|ref|XP_002838094.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633999|emb|CAZ82285.1| unnamed protein product [Tuber melanosporum]
Length = 1218
Score = 259 bits (661), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 204/731 (27%), Positives = 334/731 (45%), Gaps = 99/731 (13%)
Query: 50 LIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLI 109
+ V+ V +TP+ YF GP NRV+R YPD + F+R++F +ED + PL+
Sbjct: 437 MALVHHVSITPAGCYFFGPLPEPQNRVLRKYPDHHEYFIRVTFCEEDGE--------PLL 488
Query: 110 SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFAS----RPELTA 165
++ + L GI I +KFE L FS+S ++ S W A L
Sbjct: 489 FQHKVDQSPIYKNQFRFYLSEGITIAGRKFEFLGFSSSSLRTQSCWFMAPFYLDGKYLDP 548
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSD 225
+ +GDF I KYAAR+GQ+F + ++ V + IPDV +G T FSD
Sbjct: 549 KIVTSRLGDFSSITCPGKYAARVGQAFSDTYGSIDVRAEHEVEIPDVV--RNGRT--FSD 604
Query: 226 GIGKISAELAEIVAKNCGFTIYT-PSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYK 283
G+G IS +L + V + T P+ FQIR+ G KGVV++D K LR SM+K++
Sbjct: 605 GVGTISQQLLDRVWRESESLRKTRPTVFQIRFAGAKGVVSLDTRLVGDKFCLRPSMIKFR 664
Query: 284 SES-TSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAH 342
S ++I ++ + P +LNR LI +L +G+ + F Q+E + L T A
Sbjct: 665 GSSDRKIEICNSADWLPMYLNRPLIKVLEDIGVFESTFMTLQKEAIEDLRQSTTSVANAA 724
Query: 343 EALELMSSGENTN----VLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQN 398
L+ V++ L G+ + FL + ++L L+ + RI ++
Sbjct: 725 NFLKRQRIASTAIRLPWVIESLNNLGFNFRDDHFLEQAFELSLITSLRSLKHKARIPVKK 784
Query: 399 GRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHP 458
G ++G +DETG L+ GQ++V A D S + + G+V++ ++P HP
Sbjct: 785 GMTLVGVMDETGYLQEGQIYVTVQAR------DKSTSES------IAGRVLITRSPVHHP 832
Query: 459 GDMRVLRAV-------DVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHEL 511
GD+++ A+ D P L + +CV FP +G+R + DL Y + +D
Sbjct: 833 GDVQMALAIGTNQLPPDSP-LRALRNCVAFPQRGERDMPSMLGAPDL----YNIIYDARF 887
Query: 512 IPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKAR 571
+ P +Y P K L R + D+ ++F +++ N+ LG+I + H++ AD + +
Sbjct: 888 SLKTTYDPAEYPKVPTKDLGRPVKTSDIVDFFLEFMENNLLGMISSRHLITADKKVEGVH 947
Query: 572 SNQCLELAKLSTIAVDFSKTGVAAT---IPSGLRVEIYPDFMEKQDKTC----------- 617
CL+LA+L++ AVDF KTG+ + P + PDFM +
Sbjct: 948 HPDCLKLAELASTAVDFPKTGIKVSRSDFPKATFAK--PDFMAPGPRILIKRGPEFVEED 1005
Query: 618 ----------------YESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDG 661
YES++V+GKLYR + + A + KE ++ D V G
Sbjct: 1006 VVPDDDDDDEDTPTLYYESEKVLGKLYREIDETAFLREVQGTVNKERRARNVDEGAVVLG 1065
Query: 662 --------------FEDYITDAFKYKTEYDNRLGNLMDYYGIKT------EAEILSGCIM 701
+EDYI A + K Y+ + +M Y E E+ G I+
Sbjct: 1066 IWEWLEEAIPSNYKWEDYIGVAAELKEAYEGNVERMMLNYSDMPWKYRLREVEVFIGNIV 1125
Query: 702 EMAKSFDKKRD 712
+ +++D
Sbjct: 1126 GKERQTQRQKD 1136
>gi|328855950|gb|EGG05073.1| hypothetical protein MELLADRAFT_64236 [Melampsora larici-populina
98AG31]
Length = 1240
Score = 258 bits (660), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 209/623 (33%), Positives = 315/623 (50%), Gaps = 83/623 (13%)
Query: 56 VLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEE 115
V +TPS+ GP SN V+R Y D NFLR+S +E+ L P +
Sbjct: 446 VTITPSRFILEGPVTEQSNSVLRMYRD-THNFLRISIREEN-----GLTLRP-------D 492
Query: 116 RHTTIYE----RVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM----FASRPELTAAD 167
R I R L L G+ + +KFE L +S+S ++++ W + +TAA
Sbjct: 493 RDVDILRLLKTRYLDFLTQGLNLCGRKFEFLGYSSSALREHQAWFVCPFYKGDSLVTAAS 552
Query: 168 IRESMGDFRDIKNV-AKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDG 226
IR+ +GDF + N+ A+Y AR+ Q+F S+R++L + S I I DVE CF+DG
Sbjct: 553 IRQRLGDFSKVINIPARYMARVAQAFTSTRQSLTLLPSQIVRIEDVERNGS----CFTDG 608
Query: 227 IGKISAELAEIVAKNCGFTIYT--------PSAFQIRYGGYKGVVAVDPT-SSTKLSLRK 277
+G IS +LA V + + + S FQIR GG+KG+++VDPT + +R
Sbjct: 609 VGTISPDLARQVDEVLSAGLPSRKRRHHANSSCFQIRLGGFKGMLSVDPTLKQACVCVRP 668
Query: 278 SMLKYKS-ESTSLDILAN-SKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAIL 335
SM K+ S +S +LDI + ++ P +LNR +I +L LGI + VF QRE V++++
Sbjct: 669 SMDKFVSPDSLTLDIAGSFTRPLPAYLNRPMIKVLEDLGIHEQVFLALQREIVSKVEHSR 728
Query: 336 TDPLKAHEALELMSSGENT---NVLKEL--LMCGYKPDVEPFL-----LMMLQTFRASNL 385
T+ +A E ++ +S + ++L++L LM F+ LM++Q FR
Sbjct: 729 TNLRRASELMDQLSMARTSGMPSILRQLGTLMGDESNTQSDFIEECYDLMIMQCFR---- 784
Query: 386 LELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGV-V 444
+L+ R RI + ++G DE L V+ +C G+ +
Sbjct: 785 -DLKYRARIPLDASYTLVGVADEDQVLPPNFVY--------------ACIQYPGKAPFYL 829
Query: 445 EGKVVVAKNPCLHPGDMRVLRAVD------VPSLHHMVDCVVFPAKGKRPHTNECSGSDL 498
EG + ++++PCLHPGD+RV+ + P L+ + +CVVF G R + G DL
Sbjct: 830 EGPITISRSPCLHPGDVRVVTGIGKLDLERAPRLNALRNCVVFSVAGMRSLPSCLGGGDL 889
Query: 499 DGDVYFVCWDHELIPPLQ--FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVIC 556
DGD+Y + ELIP PP YT K L R TIED +F DYI +D +GVI
Sbjct: 890 DGDLYTLITLPELIPATARLHPPASYTAPEMKRLDRPCTIEDGAAFFLDYISSDLVGVIA 949
Query: 557 NAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRV--EIYPDFM---- 610
+ H+ AD R + CLEL L + AVD+ KTGV I R + PDFM
Sbjct: 950 SRHLHIADQADQGTRDDLCLELVSLHSDAVDYPKTGVPVAIDQLPRAPNRMKPDFMCPEH 1009
Query: 611 --EKQDKTCYESQRVIGKLYRAV 631
++ YESQ+V+GKL+R +
Sbjct: 1010 HERREGDDYYESQKVLGKLFRQI 1032
>gi|391864263|gb|EIT73559.1| RNA-directed RNA polymerase QDE-1 [Aspergillus oryzae 3.042]
Length = 1188
Score = 258 bits (659), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 207/728 (28%), Positives = 343/728 (47%), Gaps = 115/728 (15%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
V++V VTP+++ GPE+ NR++R +P+ + F+R+ F DE+ + L + +
Sbjct: 397 VHRVNVTPTRITLHGPEMEPQNRILRKFPNHHEYFIRVQFCDENGEDL--------LFNA 448
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPEL-------TA 165
N + + I+ R + GI I + + L FS+S ++ ++W S P + T
Sbjct: 449 NVD-YKDIFGRFKDIMTRGIQIAGRTYNFLGFSHSSLRSRAVWF--SSPFVDDNGHMQTY 505
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI--IPDVEVEDDGITYCF 223
I ++G F I + A+ AAR+GQ+F + + ++ + + IPD+ D + F
Sbjct: 506 FSIVSAIGKFSHITSPARCAARIGQAFTETPFMVPLEKHGVLVSTIPDLTSPDG--SRVF 563
Query: 224 SDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKY 282
SDG+G IS E+ + + P+ FQIR GG KG++A D T + +R SM+K+
Sbjct: 564 SDGVGAISREVVASIWADIPLKRGNPTCFQIRLGGAKGMLAADSRLRTAVIQIRPSMIKF 623
Query: 283 KSEST-SLDI--LANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPL 339
SE +L+I +A+ Y P LNRQ+I +L +G F + Q E + +L +I
Sbjct: 624 DSEDMKNLEICNMASRPY-PMVLNRQVIKILEDMGASKDWFFQMQNEELTRLQSITVSTD 682
Query: 340 KAHEALELMSSGENTNVLKELLMC-----GYKPDVEPFLLMMLQTFRASNLLELRTRTRI 394
K L+ S E + + C YK D FL +++ L L+ + RI
Sbjct: 683 KTARFLKDKSVAECIGLYRLYRQCYWTRLNYKKD--GFLRAIVEAVVLRELRLLKHKARI 740
Query: 395 FIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNP 454
++ G + G +DETG L+ G+V+V D + G G ++V ++P
Sbjct: 741 PVKKGMTLYGVIDETGFLQEGEVYVT---------FDRMEGRYAAPPG--PGHILVTRSP 789
Query: 455 CLHPGDMRVLRAVDVPSLH---HMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHEL 511
LH GD++ + V P H + +C+VF KG R ++ SG DLDGD+Y V WD EL
Sbjct: 790 ALHCGDIQRAQNVIPPEDHPLRYHRNCIVFSQKGSRDLPSKLSGGDLDGDLYHVIWDPEL 849
Query: 512 IPPLQFPPMDYTPAPEKV-LARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKA 570
F P DY P P + + RD+ ++D+ +F +++ +D LG+I H+V AD
Sbjct: 850 ESVETFAPADY-PRPTSIDIGRDVRVDDMAAFFVEFMRSDILGMIAIRHMVMADQAASGT 908
Query: 571 RSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIY-PDFMEKQDKT------------- 616
R C LA L + AVDFSKTG+ + RV Y PDF+ +T
Sbjct: 909 RDTSCRLLAGLHSKAVDFSKTGIPVNMEDMPRVNRYRPDFLAPGPQTRLYNKSKIGLEQH 968
Query: 617 --------------------CYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTD 656
Y+S++++GKLYRA+ + +S ++ +TD
Sbjct: 969 VSHANYDDDDDDADVEEPYRYYKSEKILGKLYRAIDE--------QSIWRKHVFSESETD 1020
Query: 657 ME------VDGF------------EDYITDAFKYKTEYDNRLGNLMDYYGIK-----TEA 693
E +D E+++ +A + + YD+ + + MD Y E
Sbjct: 1021 EEFFWNSVIDDCLRRCKSLPRTPREEHLDEAKRIRAAYDDAIISAMDTYSDHPTKPINEL 1080
Query: 694 EILSGCIM 701
E++ G I+
Sbjct: 1081 EVVIGSII 1088
>gi|402218300|gb|EJT98377.1| RdRP-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 908
Score = 258 bits (659), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 193/655 (29%), Positives = 318/655 (48%), Gaps = 74/655 (11%)
Query: 23 RWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPD 82
R QY + + SP + + D +I +VTP+ ++ GP + SN V+R+YP+
Sbjct: 107 RMQRAQYTALTMHGQSEASP-IPICDIMIRACAAIVTPTCIHLEGPYLDQSNSVLRAYPE 165
Query: 83 EIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETL 142
FLRLSF ED PL + + + + R+ + LR G+ + + FE L
Sbjct: 166 HQHYFLRLSFASEDH--------LPLYNDRDVDSRLFVGYRIGTILREGVTLAGRHFEFL 217
Query: 143 AFSNSQVKDNSMWMFAS--RPEL---TAADIRESMGDFRDI-KNVAKYAARLGQSFGSSR 196
A+S S ++ +S+WM A P L TA +R+ +GDF + K A+Y ARL Q+F ++
Sbjct: 218 AYSLSALRQHSVWMVAPFDHPVLGLMTANRVRDRLGDFSRVSKCPARYGARLAQAFTATE 277
Query: 197 EALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNC--------GFTIYT 248
++ + +I IPD + + + F+DG+G +S EL E K +
Sbjct: 278 PSIVLKPENIVEIPDKINKANKL--IFTDGVGGMSLELLEGTWKRLVENRPHLRTKIDFP 335
Query: 249 PSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYKS-ESTSLDILAN-SKYQPCFLNRQ 305
+ FQ R GG KG+++++P + +R SM K+ + +S L+I + + +P FLNR
Sbjct: 336 ATVFQFRLGGNKGLLSLNPLLPGLVMQVRPSMNKFDAPDSLGLEIAKSFERPRPFFLNRP 395
Query: 306 LITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNV------LKE 359
I LL + G+ VF QR V ++ + ++A E G + + +
Sbjct: 396 FIMLLESRGVHADVFLTLQRNAVKAVEDSKSSLIRASIMTETYGLGGTFWIRLILRNIHD 455
Query: 360 LLMCGYKPD------VEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLE 413
+L ++ +PFL ++ +A+ L E+R R RI + N ++G DE L
Sbjct: 456 ILGLDFEAGQGLTTFYDPFLKHIIDVGKANALREIRFRARIPVPNSWTLIGVADEHDVLG 515
Query: 414 SGQVFVQCSASRRREFLDNSCNNRSG--ELGVVEGKVVVAKNPCLHPGDMRVLRAVDVP- 470
+++ +C ++ G E +EG +V K+P L PGD + + + P
Sbjct: 516 KNEIY--------------ACIHKPGDPEPHWIEGPAIVTKSPSLGPGDAQFVTGIGRPP 561
Query: 471 -------SLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYT 523
+ + +CVVF +G RP + G DLDGD + V L P P DYT
Sbjct: 562 PDCPFMLGPYPLKNCVVFSCRGVRPIPSMLGGGDLDGDEFNVVQYSSLFPQYPADPDDYT 621
Query: 524 PAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLST 583
A L RD T+ DV ++ DY+ ND +G + H++ AD PD + + C +LA+L
Sbjct: 622 AAERAELDRDCTMNDVIDFIIDYVNNDLVGRLATEHLILADQHPDGVKYSNCHQLAQLYA 681
Query: 584 IAVDFSKTGVAA---TIPSGLRVEIYPDFME------KQDKTCYESQRVIGKLYR 629
+A+DF+KTG IPS L ++ PD+++ KQ Y+SQR +G ++R
Sbjct: 682 LALDFAKTGTPIDQDQIPSLLN-DMKPDYLQREQQVGKQSTKFYQSQRALGHMFR 735
>gi|328848635|gb|EGF97840.1| hypothetical protein MELLADRAFT_114044 [Melampsora larici-populina
98AG31]
Length = 1135
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 207/619 (33%), Positives = 315/619 (50%), Gaps = 75/619 (12%)
Query: 56 VLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEE 115
V +TPS+ GP SN V+R Y D NFLR+S +E+ L P + +
Sbjct: 446 VTITPSRFILEGPVTEQSNSVLRMYRD-THNFLRISIREEN-----GLTLRP---DRDVD 496
Query: 116 RHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM----FASRPELTAADIRES 171
+ R L L G+ + +KFE L +S+S ++++ W + +TAA IR+
Sbjct: 497 ILRLLKTRYLDFLTQGLNLCGRKFEFLGYSSSALREHQAWFVCPFYKGDSLVTAASIRQR 556
Query: 172 MGDFRDIKNV-AKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKI 230
+GDF + N+ A+Y AR+ Q+F S+R++L + S I I DVE CF+DG+G I
Sbjct: 557 LGDFSKVINIPARYMARVAQAFTSTRQSLTLLPSQIVRIEDVERNGS----CFTDGVGTI 612
Query: 231 SAELAEIVAKNCGFTIYT--------PSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLK 281
S +LA V + + + S FQIR GG+KG+++VDPT + +R SM K
Sbjct: 613 SPDLARQVDEVLSAGLPSRKRRHHAKSSCFQIRLGGFKGMLSVDPTLKQACVCVRPSMDK 672
Query: 282 YKS-ESTSLDILAN-SKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPL 339
+ S +S +LDI + ++ P +LNR +I +L LGI + VF QRE V++++ T+
Sbjct: 673 FVSPDSLTLDIAGSFTRPLPAYLNRPMIKVLEDLGIHEQVFLALQREIVSKVEHSRTNLR 732
Query: 340 KAHEALELMSSGENT---NVLKEL--LMCGYKPDVEPFL-----LMMLQTFRASNLLELR 389
+A E ++ +S + ++L++L LM F+ LM++Q FR +L+
Sbjct: 733 RASELMDQLSMARTSGMPSILRQLGTLMGDEGNTQSDFIEECYDLMIMQCFR-----DLK 787
Query: 390 TRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGV-VEGKV 448
R RI + ++G DE L V+ +C G+ +EG +
Sbjct: 788 YRARIPLDASYTLVGVADEDQVLPPNFVY--------------ACIQYPGKAPFYLEGPI 833
Query: 449 VVAKNPCLHPGDMRVLRAVD------VPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDV 502
++++PCLHPGD+RV+ + P L+ + +CVVF G R + G DLDGD+
Sbjct: 834 TISRSPCLHPGDVRVVTGIGKLDLERAPRLNALRNCVVFSVAGMRSLPSCLGGGDLDGDL 893
Query: 503 YFVCWDHELIPPLQ--FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHV 560
Y + ELIP PP YT K L R TIED +F DYI +D +GVI + H+
Sbjct: 894 YTLITLPELIPATARLHPPASYTAPEMKRLDRPCTIEDGAAFFLDYISSDLVGVIASRHL 953
Query: 561 VHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRV--EIYPDFM------EK 612
AD R + CLEL L + AVD+ KTGV I R + PDFM +
Sbjct: 954 HIADQADQGTRDDLCLELVSLHSDAVDYPKTGVPVAIDQLPRAPNRMKPDFMCPEHHERR 1013
Query: 613 QDKTCYESQRVIGKLYRAV 631
+ YESQ+V+GKL+R +
Sbjct: 1014 EGDDYYESQKVLGKLFRQI 1032
>gi|222629015|gb|EEE61147.1| hypothetical protein OsJ_15104 [Oryza sativa Japonica Group]
Length = 335
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 142/326 (43%), Positives = 192/326 (58%), Gaps = 19/326 (5%)
Query: 475 MVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDM 534
MVDC+VFP +G+RPH NECSG DLDGD+YF+ WD +LIP PMDYT +++ +
Sbjct: 1 MVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEKVDTPMDYTATRPRIMDHVV 60
Query: 535 TIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVA 594
T+E+++++F DY++NDSLG I AH++HAD P KARS +CL+LA L ++AVDF+KTG
Sbjct: 61 TLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECLQLATLHSMAVDFAKTGAP 120
Query: 595 ATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQS-- 652
A +P LR YPDFME+ +K Y S V+GKLYR+ + + + A S
Sbjct: 121 AEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHMEKSGDSGALSSSSAQPSPT 180
Query: 653 YDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIME--MAKSFDKK 710
YD D+EV G ++++ A +Y Y+ +L LM+YY + E EIL+G I + D K
Sbjct: 181 YDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAELEDEILTGNIRNKMLYLKRDNK 240
Query: 711 RDLEA---IIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEE 767
R E I+ AV +L +EAR W S ED ASAWY V YHP +
Sbjct: 241 RYFEMKDRIVAAVDALHREARGWL----LSSRKEEDASRMASAWYRVTYHPD-----RRR 291
Query: 768 GMNRTHFLSFPWCIHDKLIEIKRGKQ 793
G F SFPW D L+ IK Q
Sbjct: 292 G---KRFWSFPWIACDNLLAIKASSQ 314
>gi|449304105|gb|EMD00113.1| hypothetical protein BAUCODRAFT_119665 [Baudoinia compniacensis UAMH
10762]
Length = 1187
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 184/621 (29%), Positives = 300/621 (48%), Gaps = 67/621 (10%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
++KV++TP+ Y GP +NRV+R Y + D F+R+ F DED ++ P S
Sbjct: 421 IHKVVITPAGTYLEGPSAEPTNRVLRKYATQTDCFIRVVFQDEDGSSMHH---DPRAS-- 475
Query: 113 NEERHTTIYE-RVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA------SRPELTA 165
IY R L I I + F L FS+S +++ S W A +R + +
Sbjct: 476 ----QEAIYHIRYKGVLDGTINIAGQGFSFLGFSHSSLRNRSCWFMAPLIDSRTRTLVLS 531
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSD 225
+ + +GDF I+ AK AAR+GQ F + ++ V ++ +P VE FSD
Sbjct: 532 PQVIKELGDFTHIRTPAKCAARIGQCFTDTTASVSVKDWEVGKLPVVERNGRD----FSD 587
Query: 226 GIGKISAELAEIVAKNCGF-TIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKY- 282
G+G +S +L E V + G P+ QIR+ G KG+V++D +L LR +M K+
Sbjct: 588 GVGTLSRQLFEDVWQVYGMRNALKPTVLQIRFQGAKGMVSLDSRLQGRQLLLRTNMEKFV 647
Query: 283 KSESTSLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKA 341
S+S L+I A + P LNRQ + +L LG Q V +L +L +
Sbjct: 648 GSQSRVLEICGAGFRPLPMVLNRQSVQILEDLGTPTEAVLSLQTREVQKLQCMLESAVNT 707
Query: 342 H---EALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQN 398
E +EL + + +++ L + FL + Q L +++ R RI I +
Sbjct: 708 ASLLETMELTKAAKLPDLIDMLDQARLDFRHDRFLTGIAQMAVVHQLRDIKYRGRIHIND 767
Query: 399 GRAMMGCLDETGTLESGQVFV---QCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPC 455
G + G +DETG L+ G+V+V + R+E + N+ +++ ++P
Sbjct: 768 GVTLYGIMDETGYLQEGEVYVVTEKAPDGGRKELIRNN--------------ILITRSPA 813
Query: 456 LHPGDMRVLRAVDVPS---LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI 512
+HPGD++ + AV VP+ L H+ + VVF G R ++ SG DLDGD+Y + WD L
Sbjct: 814 MHPGDIQQVNAVSVPADSPLKHLSNVVVFSQHGARDLPSQLSGGDLDGDLYNIIWDSTLW 873
Query: 513 PPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARS 572
P P DY L R +T +D+ ++F ++ + LG+IC+ H+ AD P
Sbjct: 874 PTKFATPADYPRVKPVELDRIVTGKDMSDFFVTFMETNQLGMICSIHMQLADQRPMGTWD 933
Query: 573 NQCLELAKLSTIAVDFSKTGVAATIPSGLRVE-IYPDFMEKQDKTC-------------- 617
C++LA +++ AVD+SKTG+ + + + PDFM +
Sbjct: 934 PDCIKLAAMASTAVDYSKTGIPVDMKQCPKYDRCRPDFMAPSPRILLSEQGYLDLEDELS 993
Query: 618 -----YESQRVIGKLYRAVKD 633
Y+SQ+ +G+LYRA+ +
Sbjct: 994 RPYRYYKSQKALGQLYRAIDE 1014
>gi|393247829|gb|EJD55336.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1217
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 201/636 (31%), Positives = 321/636 (50%), Gaps = 76/636 (11%)
Query: 44 VALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYST 103
+A D + V K+++TP++V SGPE SNRV+R Y + ID FLR++F D D
Sbjct: 415 LAAHDSPLQVQKIIITPTRVKLSGPEPEQSNRVLRRYAENIDAFLRVTFADNDE------ 468
Query: 104 VLSPLISSTNEERHTTIYERVLST----LRNGIVIGDKKFETLAFSNSQVKDNSMWMFAS 159
S + +R I V S L+NGI I +KFE LA+S+S +K++S+W
Sbjct: 469 ------YSYHYDREVDIPTFVKSAVGIPLKNGITIAGRKFEFLAYSSSALKEHSVWFVTP 522
Query: 160 RPE------LTAADIRESMGDFRDIKN-VAKYAARLGQSFGSSREALHVDSSDIEIIP-- 210
E TA IR+S+GDF K A+ AR+ Q+F ++ ++ V+ EI+P
Sbjct: 523 FVEEKTGTYHTAKTIRDSLGDFEKEKYCAARLGARMAQAFSATDPSVEVE----EILPLD 578
Query: 211 DVEVEDDGITYCFSDGIGKISAELAEIVAKNC---------GFTIYTPSAFQIRYGGYKG 261
D+ G C SDG+G +S + +E V + G PSAFQIRY G KG
Sbjct: 579 DIPKASSG-PQCMSDGVGTMSRDFSEQVWEALESRRNKGRRGKNRPAPSAFQIRYKGAKG 637
Query: 262 VVAVD-PTSSTKLSLRKSMLKYKSESTSLDILANSKYQPC--FLNRQLITLLSTLGIRDH 318
+++VD + + LR SM+K++ ++ +A + P +LNR LI LL LG++
Sbjct: 638 MLSVDYKLKGSVICLRPSMIKFEDLNSRELEIARAFNTPARMYLNRPLIVLLEGLGVKPD 697
Query: 319 VFEKKQR---EGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLM 375
VF Q+ E + + L + E+ L ++ ++ L K LL
Sbjct: 698 VFMNLQQAALEDIHKAAGSLDTAARMLESHGLGAAFRLPSLFTSLHKLRDKHSAISELLA 757
Query: 376 MLQTFR-----ASNLL--ELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRRE 428
FR A N + EL+ + RI + + ++G +D L+ G++F +A + R+
Sbjct: 758 EDDFFRRVLDFAINHIRRELKYKARIPVPDSWTLVGVVDVHDYLKEGEIF---AAVKPRD 814
Query: 429 FLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS-----LH-HMVDCVVFP 482
+ + ++G +++ ++P +HPGD++V+RA+ P +H + +CVVF
Sbjct: 815 ---------AKKPFYLQGPMLITRSPVIHPGDVQVVRAIGRPPPGSPFVHEELPNCVVFS 865
Query: 483 AKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEY 542
KGKR + G D DGD+Y +C EL P PP +Y P K+L R IED+ ++
Sbjct: 866 IKGKRSLASCLGGGDYDGDIYNICPLTELHPKSCHPPAEYAPGQRKILDRPCGIEDIADF 925
Query: 543 FADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAAT---IP- 598
+YI +D LG I ++ AD C +LA+L + AVD+ KTG+ IP
Sbjct: 926 VTEYINSDLLGHISVNWLLIADASERGIFHPDCFKLAQLHSDAVDYPKTGMPVPHKDIPQ 985
Query: 599 --SGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVK 632
G+R + +++ DK Y SQR +G+L+RA++
Sbjct: 986 PKQGVRPDWQASELKEHDKDHYVSQRALGQLFRAIE 1021
>gi|392571578|gb|EIW64750.1| RdRP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 1224
Score = 255 bits (651), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 195/624 (31%), Positives = 311/624 (49%), Gaps = 69/624 (11%)
Query: 55 KVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNE 114
+V +TP+ + GP SNRV+R Y D+FLR+ F DE+ +L I T+
Sbjct: 423 RVTITPTTMILEGPFPERSNRVMRKYYRSQDSFLRVCFQDENRLQLR---FDREIDGTD- 478
Query: 115 ERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPE---------LTA 165
+ RV S L G+ +F+ LA+S S +K++++W + A
Sbjct: 479 ----FVNRRVKSVLLGGLAFPGARFDFLAYSQSALKEHAVWFVKPFRHTDDQGYTHFVDA 534
Query: 166 ADIRESMGDFRD-------IKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDG 218
A I S+G FR+ I A+YAAR+ Q+F ++ ++ +D+ +II +++D
Sbjct: 535 AAIIGSLGTFRNLTFDPELIYCPARYAARISQAFTATDASITIDAG--QIIFGSDIKDAS 592
Query: 219 ITYCFSDGIGKISAELAEIVAKNCGFTIYT-------PSAFQIRYGGYKGVVAVDPT-SS 270
F+DG+G IS +LA+ + + P A+QIR+ G KG+++VD T
Sbjct: 593 GKREFTDGVGTISPQLAKDIWRALQENRRRGRRDRTYPRAYQIRFQGSKGMLSVDYTLPG 652
Query: 271 TKLSLRKSMLKYKS-ESTSLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGV 328
+ +R SM+K++S +S ++++ A K P +LNR LI LL LG+ VF++ Q V
Sbjct: 653 RSILIRPSMIKFESPDSRNIEVARAFEKPAPYYLNRPLIMLLEGLGVPYEVFQRLQDNAV 712
Query: 329 AQLDAILTDPLKAHEALE---LMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNL 385
+ A + ++ LE L S T+V+ L G P F +++
Sbjct: 713 RDVKAAVESLERSARLLEGHGLGGSFRLTSVMLGLHKLGLGPLNNEVFWRQTMDFAINHV 772
Query: 386 L-ELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVV 444
L EL+ R RI + G ++G D G LE G++FV A R G L +
Sbjct: 773 LRELKHRARIPVPEGWTLVGVADVHGYLEEGEIFVCIDAPDR------------GGLRYL 820
Query: 445 EGKVVVAKNPCLHPGDMRVLRAVDVP------SLHHMVDCVVFPAKGKRPHTNECSGSDL 498
EG+ +++++P +HPGD +V+ A+ P S+ + + VVF KGKRP + G DL
Sbjct: 821 EGRTLISRSPTIHPGDAQVVHAIGRPRPGSPFSMESLRNTVVFSIKGKRPLPSCLGGGDL 880
Query: 499 DGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNA 558
DGD Y V EL+PP F +Y P K++ + T+ DV E+ A+YI +D+LG+I
Sbjct: 881 DGDEYNVTSMPELLPPRTFYAAEYKATPRKLVDHESTMVDVAEFVAEYINSDTLGIIAIT 940
Query: 559 HVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIY--PDFMEKQDKT 616
++ AD + CL+LA L + AVD+ K+G I R++ PD+ + +
Sbjct: 941 WLIIADQSTEGILDPDCLKLAALHSDAVDYPKSGQPVPIQHIPRLQFARKPDWNAPETMS 1000
Query: 617 C---------YESQRVIGKLYRAV 631
YES R IGKLYR++
Sbjct: 1001 IDTLSESPRFYESVRAIGKLYRSI 1024
>gi|388851646|emb|CCF54642.1| related to RNA-directed RNA polymerase [Ustilago hordei]
Length = 1557
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 189/612 (30%), Positives = 314/612 (51%), Gaps = 58/612 (9%)
Query: 58 VTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERH 117
VTP+++ GP +SNRV+RSYP+ +F R++F +ED D +T + P + ER+
Sbjct: 425 VTPTRILLHGPHYHVSNRVIRSYPNHWHHFARVTFTNEDRD--LATSIRPNYGFDDSERY 482
Query: 118 TTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA-----SRPELTAADIRESM 172
I RVL+ L +G+ + + ++ LA+S+S + +++W + + A IR +
Sbjct: 483 --IQSRVLNVLLHGLNVAGRHWDLLAWSSSSISTHTVWFVTPFVDNNGQRIDANVIRSRL 540
Query: 173 GDFRD-IKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKIS 231
GDF D IK+ A Y ARL Q+F ++ + V +S I PD +V + G+ Y +DG+G+IS
Sbjct: 541 GDFSDVIKSPALYGARLSQAFSATAHTISVPASHIHAKPD-KVSEQGMPY--TDGVGQIS 597
Query: 232 AEL-AEI-----VAKNCG-----FTIYTPSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSM 279
EL AE+ A G PSA Q+R GG KGV+AV+P K L +R SM
Sbjct: 598 PELMAEVWTSFLAAHGEGRKRKLLKAAAPSAIQMRLGGSKGVLAVNPRLRGKVLIIRPSM 657
Query: 280 LKYKSESTSLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDP 338
K+ S L++ A+++ +P LNR LI L G+ F + Q E + + +D
Sbjct: 658 TKFGSPHQDLEVANASTRARPAKLNRPLINALEDRGVPASAFMEIQDEAITLIGRARSDF 717
Query: 339 LKAHEALELMSSGENTNV------LKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRT 392
A S G N+ L L + G V+ F L++ ++ A+ L +++ +
Sbjct: 718 QAAARLCSAFSFGTGCNLRSLFQKLHSLGLGGKTVHVDSFFLVIAKSVTAAALGDMKRKA 777
Query: 393 RIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAK 452
RI + G M+G DE L+ G+VF Q E +++ R ++ G+ ++ +
Sbjct: 778 RIPTR-GVTMLGIADEFSLLKEGEVFAQV------ESVESGKVTRR----ILVGRNLIGR 826
Query: 453 NPCLHPGDMRVLRAVDVPSLHHMV---DCVVFPAKGK-RPHTNECSGSDLDGDVYFVCWD 508
+P + P D+ +++ V P H ++ + +VF + +P G D DGD+Y + D
Sbjct: 827 SPTVDPADVAMVKCVKPPPGHPLLQLRNVIVFDTCSRDQPFPRRLGGGDCDGDLYTIYED 886
Query: 509 HELIPPLQFPPMDYTP--APEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLE 566
L Q M + P AP + L+RD ++ +F +++ND +G++ + H+ AD+
Sbjct: 887 DRLFTKAQQSAMTFHPKIAPAE-LSRDCGSYELAFFFTQFMLNDFIGLVSSTHLRIADIS 945
Query: 567 PDKARSNQCLELAKLSTIAVDFSKTGVA---ATIPSGLRVEIYPDFM----EKQDKTCYE 619
+ ++C LA+L + A DF KTG A + +P R I PDF+ +++ K Y
Sbjct: 946 ELGSHDSRCKTLARLHSQATDFKKTGYAVDRSQMPRH-REPIIPDFLAQGEKREGKLVYS 1004
Query: 620 SQRVIGKLYRAV 631
S R +G LYRAV
Sbjct: 1005 SSRALGYLYRAV 1016
>gi|238508311|ref|XP_002385352.1| RNA-dependent RNA polymerase, putative [Aspergillus flavus
NRRL3357]
gi|220688871|gb|EED45223.1| RNA-dependent RNA polymerase, putative [Aspergillus flavus
NRRL3357]
Length = 1107
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 184/596 (30%), Positives = 299/596 (50%), Gaps = 51/596 (8%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
V++V VTP+++ GPE+ NR++R +P+ + F+R+ F DE+ + L + +
Sbjct: 397 VHRVNVTPTRITLHGPEMEPQNRILRKFPNHHEYFIRVQFCDENGEGL--------LFNA 448
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPEL-------TA 165
N + + I+ R + + GI I + + L FS+S ++ ++W S P + T
Sbjct: 449 NVD-YKDIFGRFIDIMTRGIQIAGRTYNFLGFSHSSLRSRAVWF--SSPFVDDNGHMQTY 505
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI--IPDVEVEDDGITYCF 223
I ++G F I + A+ AAR+GQ+F + + ++ + + IPD+ D + F
Sbjct: 506 FSIVSAIGKFSHITSPARCAARIGQAFTETPFMVPLEKHGVLVSTIPDLTSPDG--SRVF 563
Query: 224 SDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKY 282
SDG+G IS E+ + + P+ FQIR G KG++A D T + +R SM+K+
Sbjct: 564 SDGVGAISREVVASIWADIPLKRGNPTCFQIRLGRAKGMLAADSRLRTAVIQIRPSMIKF 623
Query: 283 KSEST-SLDI--LANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPL 339
SE +L+I +A+ Y P LNRQ+I +L +G F + Q E + +L +I
Sbjct: 624 DSEDMKNLEICNMASRPY-PMVLNRQVIKILEDMGASKDWFFQMQNEELTRLQSITVSTD 682
Query: 340 KAHEALELMSSGENTNVLKELLMC-----GYKPDVEPFLLMMLQTFRASNLLELRTRTRI 394
K L+ S E + + C YK D FL +++ L L+ + RI
Sbjct: 683 KTARFLKDKSVAECIGLYRLYRQCYWTRLNYKKD--GFLRAIVEAVVLRELRLLKHKARI 740
Query: 395 FIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNP 454
++ G + G +DETG L+ G+V+V D + G G ++V ++P
Sbjct: 741 PVKKGMTLYGVIDETGFLQEGEVYVT---------FDRMEGRYAAPPG--PGHILVTRSP 789
Query: 455 CLHPGDMRVLRAVDVPSLHHMV---DCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHEL 511
LH GD++ + V P H + +C+VF KG R ++ SG DLDGD+Y V WD EL
Sbjct: 790 ALHCGDIQRAQNVIPPEDHPLRYHRNCIVFSQKGSRDLPSKLSGGDLDGDLYHVIWDPEL 849
Query: 512 IPPLQFPPMDYTPAPEKV-LARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKA 570
F P DY P P + + RD+ ++D+ +F +++ +D LG+I H+V AD
Sbjct: 850 ESVETFAPADY-PRPTSIDIGRDVRVDDMAAFFVEFMRSDILGMIAIRHMVMADQAASGT 908
Query: 571 RSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIY-PDFMEKQDKTCYESQRVIG 625
R C LA L + AVDFSKTG+ + RV Y PDF+ +T ++ IG
Sbjct: 909 RDTSCRLLAGLHSKAVDFSKTGIPVNMEDMPRVNRYRPDFLAPGPQTRLYNKSKIG 964
>gi|429963046|gb|ELA42590.1| hypothetical protein VICG_00342 [Vittaforma corneae ATCC 50505]
Length = 2092
Score = 252 bits (643), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 190/634 (29%), Positives = 297/634 (46%), Gaps = 102/634 (16%)
Query: 57 LVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEER 116
++TP V F+ S SNRV+ ++ + D F ++ +E+ + ++ L +T+
Sbjct: 840 ILTPLSVIFNYETTSESNRVLNNF--DPDKFCKVVIREENGKDRF---MADLAKNTD--- 891
Query: 117 HTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPE---LTAAD-IRESM 172
+Y+ + NG VIG +K+ LA + SQ+K + W + AD I+ +
Sbjct: 892 --GVYDYFRRVMLNGFVIGLRKYFFLAMTTSQLKIHGSWFITPYEHDDMVIGADYIKSWI 949
Query: 173 GDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVED-DGITYCFSDGIGKIS 231
G+F IKN+ KYA R+G + S+ + VEV+D +YCF+DGIG I+
Sbjct: 950 GNFHKIKNIGKYAIRIGLALSSTTPTYPFNDF-------VEVDDIQKNSYCFTDGIGLIT 1002
Query: 232 AELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP------------------------ 267
+ A ++ G + PSAFQIR+GGYKGV+AV P
Sbjct: 1003 KKWAHNISNILGLG-FIPSAFQIRFGGYKGVIAVHPWMDEQKNFEEWLTVNSNIVRGYGK 1061
Query: 268 -----------TSSTK-------------------LSLRKSMLKYKSESTSLDILANSKY 297
TSS L +RKSM K+ S +L+I+A SK
Sbjct: 1062 YSNINSLLYSNTSSNDAVNSFHQIVASFKQLGTPDLIVRKSMNKFDSSYRTLEIIAVSKS 1121
Query: 298 QPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVL 357
+LNRQ+I +L LG+ +F Q + + + + L+ + NT +
Sbjct: 1122 SSFYLNRQIILILEGLGVPIQIFIDLQDKYIQNMLSKLSQDFTL-----FIKKYVNTTMN 1176
Query: 358 KELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQV 417
+ Y+ P L + + EL T+++I I GR+ +G LDE G LE Q+
Sbjct: 1177 ISTDLPFYRKLQSPILSKVFE--------ELNTKSKILIGQGRSAIGVLDELGILEEDQI 1228
Query: 418 FVQCSASRRREFLDNSCNNRS--GELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHM 475
F +D S N G V +VAKNP +HPGD+RV++ VD P LH++
Sbjct: 1229 FCMFQKD-----VDESMENLKDYGSYIVPNCYCIVAKNPVMHPGDIRVVKCVDAPKLHYL 1283
Query: 476 VDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMT 535
+ +VF KG RP N+CSGSDLDGD++ V W LIP F P +Y ++ +
Sbjct: 1284 KNVIVFSKKGSRPIFNQCSGSDLDGDIFLVSWCKALIPKATFKPYNYINTCA-LIKDKVL 1342
Query: 536 IEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAA 595
+ D+ ++ ++ LG I ++++ +D + + L L+ + +D+ KTG
Sbjct: 1343 LSDIVNFYIRHMKFYQLGQIAHSYLAMSD--KFSIFNEKSLRLSDIFNKNIDYVKTGHIT 1400
Query: 596 TIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYR 629
+IP L YPDFME+ Y S + IG LYR
Sbjct: 1401 SIPEDLIPTEYPDFMERS--PSYYSTKAIGHLYR 1432
>gi|388857678|emb|CCF48827.1| related to RNA-dependent RNA polymerase [Ustilago hordei]
Length = 1462
Score = 252 bits (643), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 193/679 (28%), Positives = 327/679 (48%), Gaps = 76/679 (11%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
V V +TP+++ GP + SNRV+R +P+ +F+R++F DED D+ V +
Sbjct: 457 VYHVAITPTRMLLEGPFMDASNRVLRLFPEFGSHFVRVAFCDEDGDRF--PVSRHDLHGI 514
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPE-----LTAAD 167
+ E + + ER+ L++GI I +KFE LA+S S + + W + + A
Sbjct: 515 DSE--SFVRERIGDPLKHGIAIAGRKFEALAWSGSGLGSHHCWFVTAFTDKDGNLWNAER 572
Query: 168 IRESMGDFRDI-KNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEV----------ED 216
IR+S+GDF+ + + A+ ARL Q+F ++ + ++ ++I+ D E
Sbjct: 573 IRQSLGDFQGVDRYPARLGARLSQAFSATSSTIKINDDWVKIVTDDHSNCAMPSNGPNER 632
Query: 217 DGITYCFSDGIGKISAELAEIV------AKNC--------GFTIYTPSAFQIRYGGYKGV 262
+ Y +DG+G+IS EL + + AKN PSA Q RYGG KGV
Sbjct: 633 EKQFYLLTDGVGEISRELRDDIWRELCSAKNMLREWQLSQQDARRIPSAIQFRYGGAKGV 692
Query: 263 VAVDPTSSTK-LSLRKSMLKYKS-ESTSLDILANSKYQ-PCFLNRQLITLLSTLGIRDHV 319
+ ++P K + +R SM+K+ + + L++ S + P LNR LI L LG+ V
Sbjct: 693 LCLNPQLRGKVMKVRHSMIKFSAPKHRDLEVATTSFHPLPARLNRPLINALEDLGVPADV 752
Query: 320 FEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELL----MCGYKPDV---EPF 372
F Q + V D A + + + + V K + G PD +
Sbjct: 753 FVSLQNKAVESAQLARKDFKHASQLMRSFALSDTAEVHKLFHRLDSILGITPDNLHHDSI 812
Query: 373 LLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDN 432
L + A+ L +L+ + RI + +G ++G +DE L ++FVQ +
Sbjct: 813 LNRLCTIVIAAALGDLKRKARIPV-DGCTLIGVVDEFNYLGKNEIFVQVN---------- 861
Query: 433 SCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLH---HMVDCVVFPAKGK-RP 488
+ G+ ++EG+V++ ++P +HPGD+R++ AV P H + + VVF RP
Sbjct: 862 --DKEDGQYRIIEGRVMIGRSPTIHPGDVRIVTAVKPPPTHPLRQLRNVVVFNKHPHGRP 919
Query: 489 HTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIV 548
+ SG+D DGD++ + D +L P P Y P + LAR T ED+ ++F D+++
Sbjct: 920 LQSMLSGADFDGDIFTIYEDEQLFPKQMASPGVYKNTPPRALARPCTFEDLADFFVDFVI 979
Query: 549 NDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAA---TIPSGLRVEI 605
ND +G++ H+ AD + C++LA+L AVD+ KTG A +P
Sbjct: 980 NDQIGLVSTFHLHIADQSELHSLDPDCVKLAQLHAKAVDYRKTGQAVHRKDVPMPPLNSP 1039
Query: 606 YPDFMEKQ--DKTCYESQRVIGKLYRAVKDI-------APPTATIKSFTKEVAMQSYDTD 656
PDF+ ++ + Y S R +GKL+RA+ + A P+ ++ K+ A+ S
Sbjct: 1040 RPDFLAQRPVGQGIYASSRALGKLFRAIPEHTTDTPFGAQPSWATETQGKQSALSSI--- 1096
Query: 657 MEVDGFEDYITDAFKYKTE 675
++ G D I D T+
Sbjct: 1097 LKQPGKADDIVDILTMLTQ 1115
>gi|312079416|ref|XP_003142164.1| RNA dependent RNA polymerase [Loa loa]
Length = 1486
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 229/810 (28%), Positives = 377/810 (46%), Gaps = 136/810 (16%)
Query: 46 LDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVL 105
L + + KV+ TP ++ PE+ ++NRV+R + +E LR F D++ +L
Sbjct: 427 LPHNCVLIRKVMATPLRLLLLPPEVMMTNRVIRHFGEEYA--LRCVFRDDNGQRLVPKEF 484
Query: 106 SPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA------- 158
S +++ I + + TL G+ I + ++ LA+SNSQ++D +M++
Sbjct: 485 SR--GRALQDQSLIIPDLIYRTLGTGLHIASRHYQFLAWSNSQMRDGGCYMYSDAVVNDE 542
Query: 159 --SRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEV-- 214
+ DIR MGDF K+V K +R+GQ F ++ + ++ +D ++ D+
Sbjct: 543 VHGQMICNVEDIRRWMGDFTASKSVPKMMSRMGQCFTQAQPTIMLEKNDWKVEDDIMGGI 602
Query: 215 --EDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK 272
+ G + FSDG+G+IS + A+ +A+ V+ + PT S
Sbjct: 603 VHPETGEVFNFSDGVGRISKKYADRIAE---------------------VLDLHPTPSCY 641
Query: 273 LSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQRE------ 326
+S + ++++ S P L+R LI +L D V EK+ R
Sbjct: 642 QEDEES-------AAEIEVVKYSMPAPVCLSRPLIMIL------DQVSEKQSRHLHKKIC 688
Query: 327 ---------GVAQLDAILTDPLKAHEALELMSSGENTNV-LKELLMCGYKPDVEPFLLMM 376
+ +L A++ D ++A E +SS + + +L G EPF +
Sbjct: 689 SRIHSLLELELNKLSAMMFD---ENDAAEELSSRMSLPIDFHQLHSSGITFTNEPFFRSL 745
Query: 377 LQTFRASNLLELRTRTRIFI--QNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSC 434
L N+ ++++IF+ G M G +D+TG L+ GQVF+Q S S R
Sbjct: 746 LIAIHRYNIKLHLSKSKIFLPASMGHTMYGVVDDTGLLQHGQVFIQYSPSIRYV------ 799
Query: 435 NNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECS 494
SG+ + G V+V KNPC GD+R+ AV +L H+ D +VFP G RPH +E +
Sbjct: 800 ---SGKKIIYTGPVMVTKNPCHVAGDVRMFEAVYQDALSHLCDVIVFPRYGPRPHCDEMA 856
Query: 495 GSDLDGDVYFVCWDHELI-----PPLQFP---PMDYTPAPEKVLARDMTIEDVEEYFADY 546
GSDLDGD Y V +D EL + FP P +Y P T D+ ++F Y
Sbjct: 857 GSDLDGDEYTVIFDKELFFENNEQAMFFPKSIPTEYDTPP--------TTGDMIDFFLKY 908
Query: 547 IVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGL--RVE 604
+ DS+G + NAH++ D C +A+ +AVDF KTGV A P L + +
Sbjct: 909 LSQDSIGRMSNAHLIMCDRL--GLFHEICDSIARKCAVAVDFPKTGVQAK-PLILHEQCD 965
Query: 605 IYPDFMEKQDKTCYESQRVIGKLYR---AVKDIAPPTATIKSFTKEVAMQSYDTDMEVDG 661
PD+M+ K Y S+R++G+LYR V+DI+ K F Q YD + +
Sbjct: 966 SIPDYMQNTIKPSYRSKRLLGQLYRKAQKVEDISEAVQGAK-FADYYDPQLYDESLFHEQ 1024
Query: 662 FEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAVK 721
I + + + EY +R+ L+D YGI EA ++SG + + + + ++D + + K
Sbjct: 1025 -PKLIQRSLRLRNEYYSRIQQLLDEYGISDEASVISGHSLAIKRIVEMEKDDYSFYHSDK 1083
Query: 722 SLK-KEAR--AWFNKK------NESDSSHED------------VYAKASAWYHVAYHPSY 760
++ + +R A+F ++ ESD D + KA AWY V Y ++
Sbjct: 1084 IVELRYSRIFAYFRREFFKEFGEESDFVSVDALGKRGMRWNMALITKAKAWYAVTYASAF 1143
Query: 761 WGRYKEEGMNRTHFLSFPWCIHDKLIEIKR 790
+ + F SFPW + D L+ IKR
Sbjct: 1144 --------RSSSEFRSFPWIVWDILLIIKR 1165
>gi|390596235|gb|EIN05637.1| RdRP-domain-containing protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 1230
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 211/686 (30%), Positives = 322/686 (46%), Gaps = 97/686 (14%)
Query: 48 DGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDED-LDKLYSTVLS 106
+G+ V VTPS + SNRV+R YP+ +F+R+ F DED L + L
Sbjct: 399 NGIFDCLHVAVTPSSIIPREQYPDRSNRVIRRYPNHQQHFVRVQFCDEDYLQYRFDRDL- 457
Query: 107 PLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRP----- 161
+ + +RV +R GI IG + FE LA+S S +KD+++W RP
Sbjct: 458 --------DGDGFVRDRVGGVMRTGIRIGGRAFEFLAYSQSALKDHAVWFV--RPFNLDG 507
Query: 162 -ELTAADIRESMGDF-RDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVED--- 216
+ A IR+S+G F + I+ + Y AR+ Q+F ++ ++ V ++I+ IPD+E+ D
Sbjct: 508 HRVDAEAIRQSLGTFTKVIRFPSLYGARMSQAFTATDPSITVTPNEIKRIPDIEIVDSTG 567
Query: 217 -----------------DGITYCFSDGIGKISAELAEIVA-------KNCGFTIYTPSAF 252
D I Y G+G IS LA+ +A K + P AF
Sbjct: 568 QKRQFTDGSLPSTLSYADPIDYFRLAGVGTISLALAKDIASALLAVRKRKRGKYFKPRAF 627
Query: 253 QIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSESTSLDI-LANSKYQPC--FLNRQLIT 308
QIR+ G KG+V+VD + L LR SM+K++S SLDI +A + +P LNR LI
Sbjct: 628 QIRFAGSKGMVSVDINEEGRVLCLRPSMIKFESPD-SLDIEIAKTFDRPGKFLLNRPLIM 686
Query: 309 LLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSG------------ENTNV 356
+L LG FE Q V + +A K+ LE+ G +
Sbjct: 687 ILEGLGAPAAAFEALQDAAVEEAEAARESLQKSARMLEVHGLGGAYRLPSVADVPHRLGL 746
Query: 357 LKELLMCGYKPDVEPFLLMMLQTFRASNLL-ELRTRTRIFIQNGRAMMGCLDETGTLESG 415
+ G ++ + + F +++L EL+ RI + + ++G D G LE G
Sbjct: 747 PRSSEARGTTQCIDDEFMDRMVAFAVNHVLRELKHHARIPVPDSWTLVGIADIHGVLEEG 806
Query: 416 QVF--VQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLH 473
+VF VQ +R +L EG V+V ++P HPGD+++ RA+ P
Sbjct: 807 EVFACVQPPQGGQRVYL--------------EGNVMVTRSPVAHPGDVQMARAIGRPPPG 852
Query: 474 HMVDC------VVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPE 527
D V+F KG RP + G DLDGDV+ V ++ P PP Y A
Sbjct: 853 SAYDTEPIPNTVIFSVKGSRPLPSALGGGDLDGDVFNVSQFADIFPRHLHPPASYEAAVR 912
Query: 528 KVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVD 587
K L RD TIEDV ++ D+I ND LGVI ++ AD P+ +C++L++L + AVD
Sbjct: 913 KELDRDSTIEDVMDFVVDFINNDRLGVIAINWLIIADQSPEGVFCTECIKLSQLHSDAVD 972
Query: 588 FSKTGVAATIPSG----LRVEIYPDF-----MEKQDKTCYESQRVIGKLYRAVKDIAPPT 638
F K+G ++P G L + PD+ + +D YES + IGKL+R + P
Sbjct: 973 FQKSG--RSVPLGDVPRLLMRARPDWNAPETINPEDGAYYESTKAIGKLFRRIDLPGPQE 1030
Query: 639 ATIKSFTKEVAMQSYDTDMEVDGFED 664
A ++ + M+ + D ED
Sbjct: 1031 AKEQARAQRRQMKRRRHGLTEDDIED 1056
>gi|295668891|ref|XP_002794994.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226285687|gb|EEH41253.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1142
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 201/647 (31%), Positives = 294/647 (45%), Gaps = 143/647 (22%)
Query: 51 IYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLIS 110
I +++ VTP +Y GP++ NRV+R Y +D+FLR+ FVDE D P+
Sbjct: 416 ILIHRAQVTPCGIYLYGPQLETKNRVLRIYEANVDHFLRVEFVDESGD--------PVRY 467
Query: 111 STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM---FASRPEL-TAA 166
+ R L+ GI I +KFE L FS+S ++ + W F S L A
Sbjct: 468 DSRASVDAIFQSRFKGVLKEGITIAGRKFEFLGFSHSSLRSQTCWFVAPFVSGGTLYNAT 527
Query: 167 DIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDG 226
I +++G F I + AK AAR+GQ+F + ++ + + + DVE FSDG
Sbjct: 528 VIIQNLGRFDHIHSPAKQAARIGQTFSDTLTSIPISFDMLSVGEDVERNG----RIFSDG 583
Query: 227 IGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSES 286
+G IS L KSM+K+
Sbjct: 584 VGTISPFLI-----------------------------------------KSMVKFPVPE 602
Query: 287 T--SLDI-LANS--KYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKA 341
T L+I L S K P FLN QLI +L LG+ F K Q + + +L A T P A
Sbjct: 603 TVGGLNIELCGSGLKALPFFLNAQLIKILEDLGVEQSAFLKLQADEIERLRA--TAPSTA 660
Query: 342 HEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASN----------------- 384
A L E+T++ K + + P+L+ +L+ FR S+
Sbjct: 661 QAARFL----EDTHIAKSIGL--------PWLISILEGFRLSHTDDEFLRRVMELAVLIK 708
Query: 385 LLELRTRTRIFIQNGRAMMGCLDETGTLESGQVF-VQCSASRRREFLDNSCNNRSGELGV 443
L +L+ R RI + N + G +DETG L+ G++F V S RE L
Sbjct: 709 LRDLKYRARIRVPNAVTLFGIMDETGILKEGEIFCVTLSEDGHREVL------------- 755
Query: 444 VEGKVVVAKNPCLHPGDMRVLRAVDVPS---LHHMVDCVVFPAKGKRPHTNECSGSDLDG 500
V +VVV ++P +HPGD++V +AVDVP+ L + +C+ F G R + SG DLDG
Sbjct: 756 VRPRVVVTRSPAMHPGDVQVAKAVDVPADSPLRQLHNCIAFSQYGDRDLPSMLSGGDLDG 815
Query: 501 DVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHV 560
D+Y V +D LIP + PP +Y EKVL R + +D+ ++F ++ D LG I H
Sbjct: 816 DLYNVIYDETLIPKITVPPAEYPRVEEKVLNRPVVTDDIIDFFVTFMQQDQLGRIATIHQ 875
Query: 561 VHADLEPDKARSNQCLELAKLSTIAVDFSKTGVA---ATIPS-----------GLRVEIY 606
AD QCL LA+L + AVDFSK+GV A IP G RV I
Sbjct: 876 AIADQRDRGTFDEQCLLLAELHSTAVDFSKSGVPVDLARIPKFPRYRPDFQAHGPRVRIA 935
Query: 607 PD---FMEKQDKTC----------------YESQRVIGKLYRAVKDI 634
F E ++ T Y+S +++GKLYR++ ++
Sbjct: 936 ESLSLFEEDEETTAQDLHDDEDDERPPTRFYKSYKILGKLYRSIDEV 982
>gi|393912446|gb|EFO21905.2| RNA dependent RNA polymerase [Loa loa]
Length = 1514
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 229/810 (28%), Positives = 377/810 (46%), Gaps = 136/810 (16%)
Query: 46 LDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVL 105
L + + KV+ TP ++ PE+ ++NRV+R + +E LR F D++ +L
Sbjct: 455 LPHNCVLIRKVMATPLRLLLLPPEVMMTNRVIRHFGEEYA--LRCVFRDDNGQRLVPKEF 512
Query: 106 SPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA------- 158
S +++ I + + TL G+ I + ++ LA+SNSQ++D +M++
Sbjct: 513 SR--GRALQDQSLIIPDLIYRTLGTGLHIASRHYQFLAWSNSQMRDGGCYMYSDAVVNDE 570
Query: 159 --SRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEV-- 214
+ DIR MGDF K+V K +R+GQ F ++ + ++ +D ++ D+
Sbjct: 571 VHGQMICNVEDIRRWMGDFTASKSVPKMMSRMGQCFTQAQPTIMLEKNDWKVEDDIMGGI 630
Query: 215 --EDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK 272
+ G + FSDG+G+IS + A+ +A+ V+ + PT S
Sbjct: 631 VHPETGEVFNFSDGVGRISKKYADRIAE---------------------VLDLHPTPSCY 669
Query: 273 LSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQRE------ 326
+S + ++++ S P L+R LI +L D V EK+ R
Sbjct: 670 QEDEES-------AAEIEVVKYSMPAPVCLSRPLIMIL------DQVSEKQSRHLHKKIC 716
Query: 327 ---------GVAQLDAILTDPLKAHEALELMSSGENTNV-LKELLMCGYKPDVEPFLLMM 376
+ +L A++ D ++A E +SS + + +L G EPF +
Sbjct: 717 SRIHSLLELELNKLSAMMFD---ENDAAEELSSRMSLPIDFHQLHSSGITFTNEPFFRSL 773
Query: 377 LQTFRASNLLELRTRTRIFI--QNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSC 434
L N+ ++++IF+ G M G +D+TG L+ GQVF+Q S S R
Sbjct: 774 LIAIHRYNIKLHLSKSKIFLPASMGHTMYGVVDDTGLLQHGQVFIQYSPSIRYV------ 827
Query: 435 NNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECS 494
SG+ + G V+V KNPC GD+R+ AV +L H+ D +VFP G RPH +E +
Sbjct: 828 ---SGKKIIYTGPVMVTKNPCHVAGDVRMFEAVYQDALSHLCDVIVFPRYGPRPHCDEMA 884
Query: 495 GSDLDGDVYFVCWDHELI-----PPLQFP---PMDYTPAPEKVLARDMTIEDVEEYFADY 546
GSDLDGD Y V +D EL + FP P +Y P T D+ ++F Y
Sbjct: 885 GSDLDGDEYTVIFDKELFFENNEQAMFFPKSIPTEYDTPP--------TTGDMIDFFLKY 936
Query: 547 IVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGL--RVE 604
+ DS+G + NAH++ D C +A+ +AVDF KTGV A P L + +
Sbjct: 937 LSQDSIGRMSNAHLIMCDRL--GLFHEICDSIARKCAVAVDFPKTGVQAK-PLILHEQCD 993
Query: 605 IYPDFMEKQDKTCYESQRVIGKLYR---AVKDIAPPTATIKSFTKEVAMQSYDTDMEVDG 661
PD+M+ K Y S+R++G+LYR V+DI+ K F Q YD + +
Sbjct: 994 SIPDYMQNTIKPSYRSKRLLGQLYRKAQKVEDISEAVQGAK-FADYYDPQLYDESLFHEQ 1052
Query: 662 FEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAVK 721
I + + + EY +R+ L+D YGI EA ++SG + + + + ++D + + K
Sbjct: 1053 -PKLIQRSLRLRNEYYSRIQQLLDEYGISDEASVISGHSLAIKRIVEMEKDDYSFYHSDK 1111
Query: 722 SLK-KEAR--AWFNKK------NESDSSHED------------VYAKASAWYHVAYHPSY 760
++ + +R A+F ++ ESD D + KA AWY V Y ++
Sbjct: 1112 IVELRYSRIFAYFRREFFKEFGEESDFVSVDALGKRGMRWNMALITKAKAWYAVTYASAF 1171
Query: 761 WGRYKEEGMNRTHFLSFPWCIHDKLIEIKR 790
+ + F SFPW + D L+ IKR
Sbjct: 1172 --------RSSSEFRSFPWIVWDILLIIKR 1193
>gi|403168646|ref|XP_003328239.2| hypothetical protein PGTG_09533 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375167590|gb|EFP83820.2| hypothetical protein PGTG_09533 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1246
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 208/629 (33%), Positives = 323/629 (51%), Gaps = 75/629 (11%)
Query: 56 VLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEE 115
V +TP+++ GP+I SN ++R Y + +NFLR+S DE +L + S E
Sbjct: 437 VTITPTRLSLQGPQIEQSNSILRLY-QQTENFLRVSLADETGHRLRA--------SREVE 487
Query: 116 RHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM----FASRPELTAADIRES 171
H + R L G+++ +KFE L +SNS +KD+ W + +TAA IR
Sbjct: 488 IHHLLRNRYRPFLTKGMILCGRKFEFLGYSNSALKDHQAWFVCPFYKGDQLVTAASIRAK 547
Query: 172 MGDFRDIKNV-AKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKI 230
+GDF + + A+Y AR+ Q+F S+R +L + S++ + DVE CF+DG+G I
Sbjct: 548 LGDFSKVIRIPARYMARIAQAFTSTRRSLTLRPSEVTRMDDVERNGS----CFTDGVGTI 603
Query: 231 SAELAEIVAK--NCGFTIYTPSA--FQIRYGGYKGVVAVDPTSSTKL-SLRKSMLKYKS- 284
S +L + V + N G + S+ +QIR GG+KG++++DPT K+ +R SM K+ +
Sbjct: 604 SKDLVDEVHRVLNVGNIRKSISSTCYQIRLGGFKGMLSLDPTLKGKVVRMRPSMDKFDAP 663
Query: 285 ESTSLDILAN-SKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHE 343
+S +LDI +K +LNR LI LL LGI VF + Q + + +++ + P A
Sbjct: 664 DSLTLDIAGTFTKPLVAYLNRPLIKLLEDLGIPSEVFLRLQDKIIRKVENSRSSPKLAGN 723
Query: 344 ALELMSSGENTNV------LKELLM--CGYKPDV--EPFLLMMLQTFRASNLLELRTRTR 393
++ S G + + L ELL+ + D E + LM +Q R +L+ R R
Sbjct: 724 LMQQYSMGSGSGMPSMLHKLSELLVDDRAVESDFIEECYDLMTVQCLR-----DLKYRGR 778
Query: 394 IFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKN 453
I + ++G DE L ++V C + NS +EG V ++
Sbjct: 779 IPLDKSYTLVGVADEDNFLPPDSIYV-CVQT------PNSAPM------YLEGSFAVTRS 825
Query: 454 PCLHPGDMRVLRAVD------VPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCW 507
P LHPGD+RV+ AV P L +V+CV FP +G+R + G DLDGD++ V
Sbjct: 826 PSLHPGDVRVVNAVGKLDPKRAPRLSSLVNCVAFPIQGERSLPSCLGGGDLDGDLFTVIG 885
Query: 508 DHELIPP---LQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHAD 564
+L+P +Q Y+P + L RD TI D ++F DYI +D +G+I H+ AD
Sbjct: 886 LPQLVPKRSKIQRA-ASYSPPEMRKLDRDCTIADGADFFLDYISSDLVGMIATRHLHIAD 944
Query: 565 LEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPS--GLRVEIYPDFM------EKQDKT 616
P+ + C++LA+L + AVD+ KTGV I S V + PDFM K+ +
Sbjct: 945 QCPEGTLNESCIKLAELHSDAVDYPKTGVPVNIRSLPNPPVRMKPDFMCHEHDSSKEGED 1004
Query: 617 CYESQRVIGKLYRAVK----DIAPPTATI 641
YES V+GKL+R + DI P + I
Sbjct: 1005 YYESPNVLGKLFREIPADKIDIFIPASKI 1033
>gi|325095101|gb|EGC48411.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H88]
Length = 1209
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 215/742 (28%), Positives = 334/742 (45%), Gaps = 152/742 (20%)
Query: 51 IYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKL-YSTVLSPLI 109
I +++ +TP Y GP NRV+R Y +D+FLR+ FVDE D + Y S I
Sbjct: 419 ISIHRAQITPCGTYLDGPHAETKNRVLRHYSSHVDHFLRVEFVDETGDPVRYDPRAS--I 476
Query: 110 SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA----SRPELTA 165
E R T+ L++GI I +KFE L FS+S ++ + W A R A
Sbjct: 477 DMIFESRFKTV-------LKSGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYKDRILYNA 529
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSD 225
+ I +++G F I++ AK AR+GQ+F + ++ + I I DVE FSD
Sbjct: 530 STIIQNLGRFDHIQSPAKQVARIGQTFSDTLTSIPISDKYISIGKDVERNG----RVFSD 585
Query: 226 GIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKS 284
G+G KG++++D K L LR SM+K+
Sbjct: 586 GVGA------------------------------KGMISLDSRKKGKSLVLRPSMIKFHL 615
Query: 285 EST----SLDILANS-KYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPL 339
++ +++I + K P FLN QLI +L LG+ D VF + Q + +++L A T
Sbjct: 616 PNSYNAFNIEICGSGLKPLPFFLNAQLIKILEDLGVDDSVFLRLQADEISRLRATATSTA 675
Query: 340 KAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTF--RASN------------- 384
KA LE +TN+ K + + P+L+ +L+ F R SN
Sbjct: 676 KAARFLE------DTNIAKSVGL--------PWLINILEGFGLRHSNDEFLRRVMELAVL 721
Query: 385 --LLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELG 442
L +L+ R RI + N + G +DETG L+ G+VF C+ S +++
Sbjct: 722 IKLRDLKYRARIRVPNAVTLFGIMDETGILKEGEVF--CT----------SLSDKGVREV 769
Query: 443 VVEGKVVVAKNPCLHPGDMRVLRAVDVPS---LHHMVDCVVFPAKGKRPHTNECSGSDLD 499
+V +VVV ++P +HPGD+++ RAVDVP+ L + +C+ F G R + SG DLD
Sbjct: 770 LVNPRVVVTRSPAMHPGDVQIARAVDVPADSPLRQLHNCIAFSQHGHRDLPSMLSGGDLD 829
Query: 500 GDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAH 559
GD+Y V +D+ L+P P +Y EKVL R + ED+ ++F ++ D LG I H
Sbjct: 830 GDLYNVIFDNTLLPKRIARPAEYPRVQEKVLGRAVVREDIIDFFVTFMQQDQLGRIATIH 889
Query: 560 VVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVA---ATIPSGLRVEIYPDFMEKQDKT 616
AD P +CL LA+L + AVDFSKTGV A IP PDF +
Sbjct: 890 QALADRRPLGTFDPECLLLAELHSTAVDFSKTGVPVDLARIPKFPSCR--PDFQAPSPRI 947
Query: 617 -------------------------------CYESQRVIGKLYRAVKDIAPPTATIKSFT 645
Y+S+ ++GKLYR++ ++ +
Sbjct: 948 RIAENLSLLEGDMDAVQDGGDEDDDERPAVRFYKSENILGKLYRSIDEVKFLQHRQSAME 1007
Query: 646 KEVAMQSYD--------TDMEVDGF--EDYITDAFKYKTEYDNRLGNLMDYYGIK----- 690
AM + E +GF + +I A + Y++ L +M Y
Sbjct: 1008 LPSAMGAPSVLQGVWEFVQREAEGFLWDHHIEHALDIRQIYEDNLLEIMARYSSTPWKSS 1067
Query: 691 -TEAEILSGCIMEMAKSFDKKR 711
TE E+ G I+ + +++
Sbjct: 1068 ITEYEVFVGTILGHGQKLSQRQ 1089
>gi|281207108|gb|EFA81291.1| RNA-directed RNA polymerase [Polysphondylium pallidum PN500]
Length = 2852
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 225/741 (30%), Positives = 343/741 (46%), Gaps = 87/741 (11%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKL--YSTVLSPLIS 110
V +TP++V + P I L NR +R +P E F+ + F +EDL Y L P S
Sbjct: 1320 VKSAYITPTRVILNLPRIQLGNRCIRQFPSE--RFMSVQFTEEDLQIRIEYQDFLLPFYS 1377
Query: 111 STNEERHTTIYERVLSTLRNGIVIGDK-KFETLAFSNSQVKDNSMWMF----ASRPELTA 165
L NGI + + F L S+SQV++ W + E
Sbjct: 1378 HI---------------LLNGINVPEMGTFYFLGSSSSQVRNYQSWFYCVEEGVNKESRL 1422
Query: 166 ADIRESMGDFRDIKNVAKYAAR-LGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFS 224
+IRE+M D A+ A R + F S+ + + + D V +D + F+
Sbjct: 1423 KEIREAMIGKTDSSWSARKALRAMSLVFPSTIPTIRIPPHEYHEGLDDIVRND---HNFT 1479
Query: 225 DGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKS 284
+G G + E A +A F T SA+QIR GG KGVV+V + + LRKSM K+ +
Sbjct: 1480 EGCGYVGIETAREIAIAGNFPQDT-SAYQIRIGGNKGVVSVHHSIRRGIYLRKSMRKFNT 1538
Query: 285 E-----STSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTD-P 338
+ +L++++ S + C LNRQ+I LL LG+ D F Q+ + +L I D
Sbjct: 1539 TDEHAYNRTLEVISVSSKKACNLNRQIINLLVGLGVLDGFFLSLQQAALDKLAHIFNDES 1598
Query: 339 LKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQN 398
++ H EL S E EL + +P + LQ L +++ + I I +
Sbjct: 1599 VRRHIMHELSSIDE---AFDELDLAAN----DPLICSSLQLCYLKKLDQIKDKCMIEIDS 1651
Query: 399 GRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHP 458
R ++G DE+G L +VF+Q S + V+ G+V V KNPCLHP
Sbjct: 1652 ARTVLGVSDESGILGPDEVFLQISIDEEDGHISRK---------VITGQVFVCKNPCLHP 1702
Query: 459 GDMRVLRAVDVPSLHH-MVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ- 516
GD+RVL AVDVP L + VD + F G+ P+ +CSGSDLDGD YFV +D ++ +
Sbjct: 1703 GDIRVLTAVDVPELRNCYVDVIAFSQNGEVPNFKQCSGSDLDGDRYFVGFDQTMVKFITP 1762
Query: 517 FPPM--DYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHAD-LEPDKARSN 573
PP D + + D + + + + + I SLG I +H+ D P +
Sbjct: 1763 EPPFLGDESANTKVEPPYDGSHKQLVKQYITNITRGSLGKIALSHLAICDKFSPTHPLA- 1821
Query: 574 QCLELAKLSTIAVDFSKTGVAATIPSGLR-----VEIYPDFMEKQ--DKTCYESQRVIGK 626
+ELA I VD KTGV +P ++ ++YP+FME K + S +++GK
Sbjct: 1822 --IELAIQHFIEVDAFKTGVNGKVPDIVKKHLNYFKLYPNFMESSMPKKNYWVSHKILGK 1879
Query: 627 LYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDY 686
LY+ I+ P I + + + D + VDG+++Y+ DA K T Y + +L+
Sbjct: 1880 LYQ----ISVPLKAIPRYIPDTFV---DEGLLVDGYQEYLADAKKTYTRYKFAINSLLTR 1932
Query: 687 YGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAVK--------SLKKEARAWFNKKNESD 738
Y I E +I+ I E S R + II +K S + E F K+ +
Sbjct: 1933 YDIDREEDIIIEFIKETINSM---RYTKLIIDELKKSYHEIQDSFRDEFIRVFPGKDVDE 1989
Query: 739 S---SHEDVYAKASAWYHVAY 756
+ E + K SAWY VAY
Sbjct: 1990 KKRFNSEAIQKKVSAWYKVAY 2010
>gi|392575092|gb|EIW68226.1| hypothetical protein TREMEDRAFT_74213 [Tremella mesenterica DSM
1558]
Length = 1004
Score = 249 bits (635), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 186/621 (29%), Positives = 302/621 (48%), Gaps = 91/621 (14%)
Query: 37 RFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDED 96
R+L+ L+ + V VTP+++ P SN V R Y +ID+ +R+ F DE+
Sbjct: 325 RYLSEEMTTPLSHLVLIRTVQVTPTRLLIGAPTPEPSNSVTRRYAGKIDSIIRVQFSDEE 384
Query: 97 LDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM 156
D+++ + + S + + RV LR G+V+G +++ +A S+SQ K+++MW
Sbjct: 385 -DRIFVQDYTKQVDSQRPD--LGVMARVRRALRWGLVVGGRRYLPVASSSSQQKEHAMW- 440
Query: 157 FASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI---IPDVE 213
F E+ +++ MG D +AK+AAR+G F +SR + +++I IPDVE
Sbjct: 441 FIDNKEIDMLELQRWMGQV-DETIIAKHAARMGLPFSTSR----IVEINVDIGLQIPDVE 495
Query: 214 VEDDGITYCFSDGIGKISAELAEIVAKNCGF---TIYTPSAFQIRYGGYKGVVAVDP--T 268
+CF+DG+G E+ A+ GF TPSA Q R GG KG++A P
Sbjct: 496 RNG----HCFTDGVGLAGFEVMREAARALGFREGINSTPSAIQFRLGGAKGMLAFWPGRV 551
Query: 269 SSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGV 328
++ +RKSM+K+KS L+++ + I ++ GI + + + V
Sbjct: 552 KDHEVKMRKSMVKFKSGLKDLNVV------------RFIMIMCANGIPEQLMIDIFNDAV 599
Query: 329 AQLDAILTDPLKAHEALELMSSGENTNV-------LKELLMCGYKPDVEPFLLMMLQTFR 381
A + L+ A + +S ++ + L L+ G+ + P +L +
Sbjct: 600 ASIKG-----LRERVATKTLSRDDHKLISTCSEFPLLALIKAGFHEN--PMILDICSIVE 652
Query: 382 ASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGEL 441
L +L+ R R+ + G ++G DETGTL+ G+VF Q S D++
Sbjct: 653 TRALQDLKWRARVRLPTGVFLIGIADETGTLKEGEVFCQYQES------DDTPPV----- 701
Query: 442 GVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGD 501
+VE +V+V + P LHPGD+R AVD P L H+ + +VF +G+R N G DLDGD
Sbjct: 702 -IVESEVIVCRAPALHPGDVRRAFAVDNPYLRHLKNVLVFSVQGERDLPNMLGGGDLDGD 760
Query: 502 VYFVCWDHELIPPLQFP------------PMDYTPAPEKVLARDMTIEDVEEYFADYIVN 549
P FP P + AP++ M +D + N
Sbjct: 761 A-----------PQGFPSDELYGSSSATGPKGDSTAPQREFCSVMVTDDSQ--------N 801
Query: 550 DSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDF 609
D LG + N H+ +D E CLEL+++ + AVDF KTG AA + +R +++PDF
Sbjct: 802 DVLGQVDNCHLARSDWEDKGPFHPDCLELSEIHSTAVDFPKTGQAAILDPSMRPKLWPDF 861
Query: 610 MEKQ-DKTCYESQRVIGKLYR 629
M+K K YESQ+++G L+R
Sbjct: 862 MDKDATKKTYESQKILGILFR 882
>gi|240282192|gb|EER45695.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H143]
Length = 396
Score = 248 bits (633), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 142/381 (37%), Positives = 226/381 (59%), Gaps = 18/381 (4%)
Query: 118 TTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRD 177
+ +Y RV L++GI+IGD+ +E LAF NSQ +++ + FAS P LTAA+IR MGD +
Sbjct: 2 SEVYARVTRILQHGIIIGDRHYEFLAFGNSQFREHGAFFFASLPHLTAANIRAQMGDLNN 61
Query: 178 IKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEI 237
IK VAKYAARLGQ F ++R V S +++ ++E +G Y FSDG+G++S L ++
Sbjct: 62 IKVVAKYAARLGQCFSTTRA---VTSCPVQLKEVDDIERNG--YVFSDGVGRLSHFLTQM 116
Query: 238 VAKNCGFTIYT---PSAFQIRYGGYKGVVAVDPTS-STKLSLRKSMLKYKSESTSLDILA 293
+ + G + PSAFQ R GG KG++AV + ++ +RKS K+ + L+I+
Sbjct: 117 IRSDLGINTPSGQPPSAFQFRLGGCKGILAVSSDAHGQEVHIRKSQYKFAAAHHGLEIIR 176
Query: 294 NSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALEL-MSSGE 352
+S + LNRQLI +LS LG+ D VF K R + +L+ +T+ +A L+ + +
Sbjct: 177 HSHFSLATLNRQLILVLSCLGVPDKVFIAKLRMMMDKLEQAMTNEEQAVHLLQTHVDPNQ 236
Query: 353 NTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTL 412
T +L +++ G++ EPF+ +L+ +R + L+ + +I I G ++GC+DET TL
Sbjct: 237 MTLILADMVRDGFQGSKEPFVSSLLELWRTWQIKYLKEKAKIAIDEGAFLLGCIDETKTL 296
Query: 413 ES-------GQ-VFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVL 464
+ GQ + S + E + G+ ++EG ++A+NP LHPGD+RV+
Sbjct: 297 KGYFRSSRPGQDATYEESVACLPEIFVQVWRHSEGKYVIIEGVCILARNPSLHPGDIRVV 356
Query: 465 RAVDVPSLHHMVDCVVFPAKG 485
+AV+ PSLHH+ D VV P G
Sbjct: 357 KAVNAPSLHHLRDVVVLPQLG 377
>gi|367034442|ref|XP_003666503.1| hypothetical protein MYCTH_2071684 [Myceliophthora thermophila ATCC
42464]
gi|347013776|gb|AEO61258.1| hypothetical protein MYCTH_2071684 [Myceliophthora thermophila ATCC
42464]
Length = 1182
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 190/631 (30%), Positives = 301/631 (47%), Gaps = 82/631 (12%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
+ +V+VTP+ V GPE+ NRV+R +P+ F+R F DE + L+ S
Sbjct: 425 IFRVVVTPTSVLLHGPELEPMNRVLRKFPNH-SYFIRAQFCDEAGNDLFFN------SKV 477
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM---FASRPELTAAD-I 168
+ +R IY R S L +GI I + ++ L FS+S ++ +S W+ F + + D I
Sbjct: 478 SLDR---IYNRFKSILSDGIQIAGRVYKLLGFSHSSLRAHSAWLSAPFFHQNQRHGPDFI 534
Query: 169 RESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI--IPDVEVEDDGITYCFSDG 226
E++GDF DI++ A+ AAR+GQ+F + AL +D I++ IPDVE FSDG
Sbjct: 535 IETLGDFNDIRSPARRAARIGQAFSETPWALDLDEYGIQVSRIPDVERNG----RVFSDG 590
Query: 227 IGKIS----AELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLK 281
IG IS + + +++ K+ GF P+ QIR+ G KG++A+DP ++ +R SM+K
Sbjct: 591 IGTISHDALSAVYKVIPKSKGF----PTCLQIRWAGAKGMLALDPLLEGRRICIRDSMIK 646
Query: 282 YKSESTSLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLK 340
+ S L+I S+ P LNRQLI +L + D F Q + +L I
Sbjct: 647 FASNDKQLEICDMASRPMPMVLNRQLIKILEDMKAPDEWFLNLQSTELQRLRGISATVYN 706
Query: 341 AHEALELMSSGENTNV---LKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQ 397
+ + E+ + L++ G + FL ++ L L+ ++RI ++
Sbjct: 707 TASFIRMQKVAESIKLHDFLRQTEAMGIDYRQDSFLRGAVEIILLRELRLLKHKSRIPVR 766
Query: 398 NGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLH 457
G + G +DETG L+ GQV+V R G ++V ++P LH
Sbjct: 767 EGITLFGVMDETGFLKEGQVYVTFDTEEGRYAQPPE-----------PGPLLVTRSPALH 815
Query: 458 PGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ- 516
PGD G R ++ SG DLDGDV+ V WD E++ L
Sbjct: 816 PGDW-----------------------GSRDLPSQLSGGDLDGDVFHVIWDPEVVGALTT 852
Query: 517 FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCL 576
+ P DY L R +T+ D+ +F D++ D LGVI H++ AD + D R C+
Sbjct: 853 YQPADYGRTTPPELNRPVTLADIASFFVDFMKTDQLGVIAIRHMILADQKEDGTRDQNCI 912
Query: 577 ELAKLSTIA--VDFSKTGVAATIPSGLRVEIYPDFMEKQDKTC-----------YESQRV 623
LA+L + A DF G + T+ + + D + ++D Y+S+R+
Sbjct: 913 ALAELHSSAWRPDFLAPGPSITVHDKSNISL-DDHVVQEDSDSEDEEGQPRYGYYKSERI 971
Query: 624 IGKLYRAVKDIAPPTATIKSFTKEVAMQSYD 654
IG+LYRAV + + IK K +D
Sbjct: 972 IGQLYRAVDERKIWSKDIKMIIKPRGPSFWD 1002
>gi|343428005|emb|CBQ71530.1| related to RNA-dependent RNA polymerase [Sporisorium reilianum SRZ2]
Length = 1505
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 191/637 (29%), Positives = 309/637 (48%), Gaps = 78/637 (12%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
V V +TP++ GP + SNRV+R +P+ +FLR++F DED D+ +S +
Sbjct: 466 VFHVTITPTRTLLEGPFMDASNRVLRLFPEFGSHFLRVAFCDEDGDRF---PVSRHDFAD 522
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPE-----LTAAD 167
+ + + + ER+ + L+ GI I ++FE LA+S S + + W + + A
Sbjct: 523 DIDSESFVRERIGTPLKEGIDIAGRRFEALAWSGSGLGSHHCWFVTAFTDKDGKWWNAER 582
Query: 168 IRESMGDFRDIKNV-AKYAARLGQSFGSSREALHVDSSDIEIIPD-------VEVEDDGI 219
IR S+G+F ++N A++ ARL Q+F ++ + + I+I+ D +G
Sbjct: 583 IRASLGNFSRVENQPARFGARLSQAFSATSSTIRISDDWIQIVEDDFSHALMPSSNGNGR 642
Query: 220 T----YCFSDGIGKIS-AELAEIVAKNCGF-------------TIYTPSAFQIRYGGYKG 261
+ Y +DG+G+IS A L EI + C PSA Q R GG KG
Sbjct: 643 SSKQRYLLTDGVGEISRALLNEIWRELCAVKNMRREWTLCEQDAARIPSAIQFRLGGAKG 702
Query: 262 VVAVDPTSSTK-LSLRKSMLKYKS-ESTSLDILANS-KYQPCFLNRQLITLLSTLGIRDH 318
V+ ++P K + +R SM+K+ + E L++ S P LNR LI L LG+ H
Sbjct: 703 VLCLNPQLKGKVMKVRHSMIKFSAPEHRDLEVATTSFSALPARLNRPLINALEDLGVPAH 762
Query: 319 VFEKKQREGVAQLDAILTDPLKAHEAL---ELMSSGENTNVLKEL-LMCGYKPDVEP--- 371
VF Q + V + +A + + L + E + + L + G +PD P
Sbjct: 763 VFLTLQDKAVESAQSARKCFRRASQLMGTFALSDTAEMHRLFRRLDSIVGIQPDQLPADG 822
Query: 372 FLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLD 431
L + A+ L +L+ + RI + +G ++G +DE G L+ G++F Q
Sbjct: 823 ILNRLCTIVIAAALGDLKRKARIPV-DGCTLIGVVDEFGFLQKGEIFAQVDY-------- 873
Query: 432 NSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLH---HMVDCVVF-PAKGKR 487
+ G VEG+V+V ++P +HPGD+RV+ AV P H + + +VF R
Sbjct: 874 ----GKDGSFTAVEGRVMVGRSPTIHPGDVRVVNAVVPPRGHPLWQLRNVLVFNKCPTGR 929
Query: 488 PHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYI 547
P + SG DLDGD+Y + D +L P P Y + LA T D+ ++F DY+
Sbjct: 930 PLQSILSGGDLDGDIYTIYRDPQLFPKRIESPGQYKTVAPRSLAAPCTFADLADFFVDYV 989
Query: 548 VNDSLGVICNAHVVHAD------LEPDKARSNQCLELAKLSTIAVDFSKTGVAA---TIP 598
+ND +G++ + H+ AD L+PD C+ LA+L AVD+ KTG A +P
Sbjct: 990 INDQVGLVSHFHLQIADKSHLHSLDPD------CIRLAQLHAKAVDYRKTGQAVHRRDVP 1043
Query: 599 SGLRVEIYPDFMEKQ--DKTCYESQRVIGKLYRAVKD 633
PDF+ ++ Y S R +G+LYRA+ +
Sbjct: 1044 MPPFGAERPDFLVQRPAGPGIYPSTRALGQLYRAIPE 1080
>gi|154272513|ref|XP_001537109.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409096|gb|EDN04552.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1209
Score = 246 bits (629), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 213/756 (28%), Positives = 339/756 (44%), Gaps = 152/756 (20%)
Query: 37 RFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDED 96
R +T ++ I +++ +TP Y GP NRV+R Y +D+FLR+ FVDE
Sbjct: 405 REMTRSNRPMNPNHISIHRAQITPCGTYLDGPHAETKNRVLRHYSSHVDHFLRVEFVDET 464
Query: 97 LDKL-YSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMW 155
D + Y S I E R T+ L++GI I +KFE L FS+S ++ + W
Sbjct: 465 GDPVRYDPRAS--IDMIFESRFKTV-------LKSGINIAGRKFEFLGFSHSSLRSQTCW 515
Query: 156 MFA----SRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPD 211
A R A+ I +++G F I++ AK AAR+GQ+F + ++ + I I D
Sbjct: 516 FVAPFYKDRILYNASTIIQNLGRFDHIQSPAKQAARIGQTFSDTLTSIPISDKYISIGKD 575
Query: 212 VEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSST 271
VE FSDG+G KG++++D
Sbjct: 576 VERNG----RVFSDGVGA------------------------------KGMISLDSRKKG 601
Query: 272 K-LSLRKSMLKYKSEST----SLDILANS-KYQPCFLNRQLITLLSTLGIRDHVFEKKQR 325
K L LR SM+K+ ++ +++I + K P FLN Q+I +L LG+ + VF + Q
Sbjct: 602 KSLVLRPSMIKFHLPNSYNAFNIEICGSGLKPLPFFLNAQMIKILEDLGVDESVFLRLQA 661
Query: 326 EGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTF--RAS 383
+ +++L A T KA LE +TN+ K + + P+L+ +L+ F R S
Sbjct: 662 DEISRLRATATSTAKAARFLE------DTNIAKSVGL--------PWLINVLEGFGLRHS 707
Query: 384 N---------------LLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRRE 428
N L +L+ R RI + N + G +DETG L+ G+VF C+
Sbjct: 708 NDEFLRRVMELSVLIKLRDLKYRARIRVPNAVTLFGIMDETGILKEGEVF--CT------ 759
Query: 429 FLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS---LHHMVDCVVFPAKG 485
S +++ +V +VVV ++P +HPGD+++ RAVDVP+ L + +C+ F G
Sbjct: 760 ----SLSDKGVREVLVNPRVVVTRSPAMHPGDVQIARAVDVPADSPLRQLHNCIAFSQHG 815
Query: 486 KRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFAD 545
R + SG DLDGD+Y V +D+ L+P P +Y EKVL R + ED+ ++F
Sbjct: 816 HRDLPSMLSGGDLDGDLYNVIFDNTLLPKRIARPAEYPRVQEKVLGRTVVREDIIDFFVT 875
Query: 546 YIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVA---ATIPSGLR 602
++ D LG I H AD P +CL LA+L + AVDFSKTGV A IP
Sbjct: 876 FMQQDQLGRIATIHQALADQRPLGTFDPECLLLAELHSTAVDFSKTGVPVDLARIPKFPS 935
Query: 603 VEIYPDFMEKQDKT-------------------------------CYESQRVIGKLYRAV 631
PDF + Y+S+ ++GKLYR++
Sbjct: 936 CR--PDFQAPSPRIRIAENLSLLEGDMDAVQDGGDEDDDERPAVRFYKSENILGKLYRSI 993
Query: 632 KDIA----------PPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLG 681
++ P+A + + E ++ +I A + Y++ L
Sbjct: 994 DEVKFLQHRQSVMELPSAMCAPSVLRGVWEFVQREAEGFLWDHHIEHALDIRQIYEDNLL 1053
Query: 682 NLMDYYGIK------TEAEILSGCIMEMAKSFDKKR 711
+M + TE E+ G I+ + +++
Sbjct: 1054 EIMARFSSTPWKSSITEYEVFVGTILGHGQKLSQRQ 1089
>gi|66802840|ref|XP_635263.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
gi|60463423|gb|EAL61608.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
Length = 2403
Score = 246 bits (628), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 205/738 (27%), Positives = 348/738 (47%), Gaps = 87/738 (11%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
+ V +TPS+ F P + S R VR + NF+ + V+E L+ PL
Sbjct: 1208 IRDVFITPSRTIFIQPTLQRSCRAVRKFGSS--NFIMVKIVNESLE--------PLQGVN 1257
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESM 172
N +H R+ L GI++G K + SNSQ+++ S W +++ I +
Sbjct: 1258 N--KHPLHENRIKPILEGGILVGGKIYSYAGNSNSQLREYSSWFVSNQIGTHTVKIWSGI 1315
Query: 173 GDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISA 232
+ NV K+ +G F ++ + + + I I D+ T+ F++G G+I
Sbjct: 1316 ---EHVDNVRKFFRCIGLMFSTTIPTVTLPQNRIYRIQDITRN----THVFTEGCGEIGP 1368
Query: 233 ELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSS--TKLSLRKSMLKYK-----SE 285
ELA+ + +N F T A+Q+R GG KG++ V+ + + + +R SM+K+ E
Sbjct: 1369 ELAKHLNENYNFRPST-CAYQVRIGGNKGMLVVNNQAPDPSGIYIRPSMVKFNPIVCGDE 1427
Query: 286 STSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL 345
+L+I + S C LNRQ+I+LLSTLG +D+VF Q + Q+ I+ D + +A+
Sbjct: 1428 HRTLEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTNASKQAI 1487
Query: 346 ELMSSGENTNVLKELLMCGYKPDV-------EPFLLMMLQTFRASNLLELRTRTRIFIQN 398
+ PD+ +P++ +L + + ++ + I I++
Sbjct: 1488 -----------------VEFFPDITEGELYQDPYIRRILISLYKLKMERIQQKCHIEIKD 1530
Query: 399 GRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHP 458
R ++G D T +L VFVQ + R E V+EG V+V KNPC HP
Sbjct: 1531 SRMLLGVCDPTNSLPPNTVFVQLEEEDED-----DDDGRKYE-KVIEGLVMVIKNPCTHP 1584
Query: 459 GDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFP 518
GD+R L+AVD L H+ + +VF KG P+ E SGSDLDGD YF C+D LI
Sbjct: 1585 GDVRYLKAVDNLRLRHLRNVLVFSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRSKS 1644
Query: 519 PMDYTPAPEKVLARDMTIEDVEEYFA---DYIVN---DSLGVICNAHVVHADLEPDKARS 572
Y E V D + FA Y N LG + N+H+ +DL A
Sbjct: 1645 ETAYL-GDETVSNNDKKANVFNDPFALSSMYSTNVERQELGKMYNSHLAISDLFG--ANH 1701
Query: 573 NQCLELAKLSTIAVDFSKTGVAATIPS----GLRVEIYPDFMEKQDKT--CYESQRVIGK 626
++++K +D+ KTG+ TIP L+ + YP +M++++ T Y+S+ ++GK
Sbjct: 1702 EFSIQISKECFKEIDYPKTGIHGTIPKEANVWLKTKGYPHYMQRENSTRVYYQSKTIMGK 1761
Query: 627 LYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDY 686
+Y + + I F +++ D VD +E Y+ A ++Y ++ +L+ +
Sbjct: 1762 MYDQIDQL----VYIGDFLPNISL---DKSNLVDDYEIYLNSAKILYSQYKLQVHSLLRH 1814
Query: 687 YGIKTEAEILSGCIMEMAKSFDKKRDLEA-----IIFAVKSLKKEARAWFNKKNESDS-- 739
Y ++E I+ G + + S +D++ I ++ + E F ++++ +
Sbjct: 1815 YSAESEESIMIGFLDQGFISDKVSKDIKGEMKNDYIKIQQTFENEFLKEFGEQHKENCLL 1874
Query: 740 -SHEDVYAKASAWYHVAY 756
++ K SAWYHVAY
Sbjct: 1875 IHRVNIEKKVSAWYHVAY 1892
>gi|14475571|emb|CAC41975.1| putative RNA dependent RNA polymerase [Dictyostelium discoideum]
Length = 1964
Score = 246 bits (628), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 205/738 (27%), Positives = 348/738 (47%), Gaps = 87/738 (11%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
+ V +TPS+ F P + S R VR + NF+ + V+E L+ PL
Sbjct: 765 IRDVFITPSRTIFIQPTLQRSCRAVRKFGSS--NFIMVKIVNESLE--------PLQGVN 814
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESM 172
N +H R+ L GI++G K + SNSQ+++ S W +++ I +
Sbjct: 815 N--KHPLHENRIKPILEGGILVGGKIYSYAGNSNSQLREYSSWFVSNQIGTHTVKIWSGI 872
Query: 173 GDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISA 232
+ NV K+ +G F ++ + + + I I D+ T+ F++G G+I
Sbjct: 873 ---EHVDNVRKFFRCIGLMFSTTIPTVTLPQNRIYRIQDITRN----THVFTEGCGEIGP 925
Query: 233 ELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSS--TKLSLRKSMLKYK-----SE 285
ELA+ + +N F T A+Q+R GG KG++ V+ + + + +R SM+K+ E
Sbjct: 926 ELAKHLNENYNFRPST-CAYQVRIGGNKGMLVVNNQAPDPSGIYIRPSMVKFNPIVCGDE 984
Query: 286 STSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL 345
+L+I + S C LNRQ+I+LLSTLG +D+VF Q + Q+ I+ D + +A+
Sbjct: 985 HRTLEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTNASKQAI 1044
Query: 346 ELMSSGENTNVLKELLMCGYKPDV-------EPFLLMMLQTFRASNLLELRTRTRIFIQN 398
+ PD+ +P++ +L + + ++ + I I++
Sbjct: 1045 -----------------VEFFPDITEGELYQDPYIRRILISLYKLKMERIQQKCHIEIKD 1087
Query: 399 GRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHP 458
R ++G D T +L VFVQ + R E V+EG V+V KNPC HP
Sbjct: 1088 SRMLLGVCDPTNSLPPNTVFVQLEEEDED-----DDDGRKYE-KVIEGLVMVIKNPCTHP 1141
Query: 459 GDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFP 518
GD+R L+AVD L H+ + +VF KG P+ E SGSDLDGD YF C+D LI
Sbjct: 1142 GDVRYLKAVDNLRLRHLRNVLVFSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRSKS 1201
Query: 519 PMDYTPAPEKVLARDMTIEDVEEYFA---DYIVN---DSLGVICNAHVVHADLEPDKARS 572
Y E V D + FA Y N LG + N+H+ +DL A
Sbjct: 1202 ETAYL-GDETVSNNDKKANVFNDPFALSSMYSTNVERQELGKMYNSHLAISDLFG--ANH 1258
Query: 573 NQCLELAKLSTIAVDFSKTGVAATIPS----GLRVEIYPDFMEKQDKT--CYESQRVIGK 626
++++K +D+ KTG+ TIP L+ + YP +M++++ T Y+S+ ++GK
Sbjct: 1259 EFSIQISKECFKEIDYPKTGIHGTIPKEANVWLKTKGYPHYMQRENSTRVYYQSKTIMGK 1318
Query: 627 LYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDY 686
+Y + + I F +++ D VD +E Y+ A ++Y ++ +L+ +
Sbjct: 1319 MYDQIDQL----VYIGDFLPNISL---DKSNLVDDYEIYLNSAKILYSQYKLQVHSLLRH 1371
Query: 687 YGIKTEAEILSGCIMEMAKSFDKKRDLEA-----IIFAVKSLKKEARAWFNKKNESDS-- 739
Y ++E I+ G + + S +D++ I ++ + E F ++++ +
Sbjct: 1372 YSAESEESIMIGFLDQGFISDKVSKDIKGEMKNDYIKIQQTFENEFLKEFGEQHKENCLL 1431
Query: 740 -SHEDVYAKASAWYHVAY 756
++ K SAWYHVAY
Sbjct: 1432 IHRVNIEKKVSAWYHVAY 1449
>gi|14475569|emb|CAC41974.1| putative RNA dependent RNA polymerase [Dictyostelium discoideum]
Length = 1883
Score = 245 bits (626), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 203/738 (27%), Positives = 350/738 (47%), Gaps = 86/738 (11%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
+ V +TPS+ F P + S R VR + NF+ + V+E L+ PL
Sbjct: 940 IRDVFITPSRTIFIQPTLQRSCRAVRKFGSS--NFIVVKIVNESLE--------PLQGVN 989
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESM 172
N +H R+ L GI++G + + SNSQ+++ S W +++ I +
Sbjct: 990 N--KHPLHENRIKPILEGGILVGGEIYSYAGNSNSQLREYSSWFVSNQIGTHTVKIWSGI 1047
Query: 173 GDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISA 232
+ NV K+ +G F ++ + + + I I D+ T+ F++G G+I
Sbjct: 1048 ---EHVDNVRKFFRCIGLMFSTTIPTVTLPQNRIYRIQDITRN----THEFTEGCGEIGP 1100
Query: 233 ELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSS--TKLSLRKSMLKYK-----SE 285
ELA+ + +N F T A+Q+R GG KGV+ V+ + + + +R SM+K+ E
Sbjct: 1101 ELAKHLNENYNFRPST-CAYQVRIGGNKGVLVVNNQAPDPSGIYIRPSMVKFNPIDCGDE 1159
Query: 286 STSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL 345
+L+I + S C LNRQ+I+LLSTLG +D+VF Q + Q+ I+ D + +A+
Sbjct: 1160 HRTLEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTNASKQAI 1219
Query: 346 ELMSSGENTNVLKELLMCGYKPDV-------EPFLLMMLQTFRASNLLELRTRTRIFIQN 398
+ PD+ +P++ +L + + ++ + I I++
Sbjct: 1220 -----------------VEFFPDITEGELYQDPYIRRILISLYKLKMERIQQKCHIEIKD 1262
Query: 399 GRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHP 458
R ++G D T +L VFVQ + + R E V+EG V+V KNPC HP
Sbjct: 1263 SRMLLGVCDPTNSLPPNTVFVQLEEEDEDD----DDDGRKYE-KVIEGLVMVIKNPCTHP 1317
Query: 459 GDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFP 518
GD+R L+AVD L H+ + +VF KG P+ E SGSDLDGD YF C+D LI
Sbjct: 1318 GDVRYLKAVDNIRLRHLRNVLVFSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRSES 1377
Query: 519 PMDYTPAPEKVLARDMTIEDVEEYFA---DYIVN---DSLGVICNAHVVHADLEPDKARS 572
Y E V D + FA Y N LG + ++H+ +D A
Sbjct: 1378 ETAYL-VVETVSNNDKKANVFNDPFALSSMYSTNAERQELGKLYHSHLAISD--QYGANH 1434
Query: 573 NQCLELAKLSTIAVDFSKTGVAATIPSGLRVEI----YPDFMEKQDKT--CYESQRVIGK 626
++++K +D+ KTG+ TIP + + + YP +M++++ T Y+S++++GK
Sbjct: 1435 KYSIQISKECFKEIDYPKTGIHGTIPKEVNIRLQTVGYPHYMQRENSTRVYYQSKKIMGK 1494
Query: 627 LYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDY 686
+Y + + I F +++ D VDG+E Y+ A ++Y ++ +L+ +
Sbjct: 1495 MYDQIDQL----VYIGDFLPNISL---DKSNLVDGYEIYLNSAKILYSQYKLQVHSLLRH 1547
Query: 687 YGIKTEAEILSGCIMEMAKSFDKKRDLEA-----IIFAVKSLKKEARAWFNKKNESDS-- 739
Y ++E I+ G + + S +D++ I ++ + E F ++++ +
Sbjct: 1548 YSAESEESIMIGFLDQGFISDKVSKDIKGEMKNDYIKIQQTFENEFLKEFGEQHKENCLL 1607
Query: 740 -SHEDVYAKASAWYHVAY 756
++ K SAWYHVAY
Sbjct: 1608 IHRVNIEKKVSAWYHVAY 1625
>gi|389746475|gb|EIM87655.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1279
Score = 245 bits (626), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 206/631 (32%), Positives = 310/631 (49%), Gaps = 62/631 (9%)
Query: 36 RRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDE 95
RRF SP+ A+ D V +TP GP + SN V+R + D FLRLSF DE
Sbjct: 466 RRFAISPSDAIFDSYTLV----LTPLSRILEGPLLDQSNSVLRRFGHH-DCFLRLSFQDE 520
Query: 96 DLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMW 155
+ L P ++ E + R S + +GI I + F+ L +S S +KD+S+
Sbjct: 521 NHTPLRR---DPTSGTSIAE---LLRTRFRSVMVDGIRIAGRYFQFLGYSMSGLKDHSIM 574
Query: 156 MFAS----RPEL-TAADIRESMGDFRDIKN-VAKYAARLGQSFGSSREALHVDSSDIEII 209
+S R EL TA IR ++G F I N A AAR Q+F +S ++ +D ++I I
Sbjct: 575 FMSSFHDERGELMTAEGIRRTLGSFNHISNKPALLAARWSQAFSASDPSVTLDPNEIRRI 634
Query: 210 PDVEVEDDGITYCFSDGIGKISAELAEIVAK-------NCGFTIYTPSAFQIRYGGYKGV 262
D + F+DG G IS LA V K PS FQIR GG KGV
Sbjct: 635 DDRRSPSGSL---FTDGCGTISPLLARDVWKFLQHRRRRAAKMRSVPSCFQIRIGGAKGV 691
Query: 263 VAVDPTSS---TKLSLRKSMLKYKS-ESTSLDILANSKYQPC--FLNRQLITLLSTLGIR 316
+ DPT + + LR S K+++ E+ +LDI A++ +P FLNR LI LL LG++
Sbjct: 692 LFQDPTLAGLGRVVCLRPSQTKFENPEALTLDI-ASTSARPIRMFLNRPLILLLEFLGVQ 750
Query: 317 DHVFEKKQREGVAQLDAI---LTDPLKAHEALELMSSGENTNVLKELL--MCGYKPDVEP 371
D VF Q++ A ++ TD K SS ++ L+ + D++
Sbjct: 751 DDVFLSLQKDATAAVERARDSFTDAAKLFSHHGFGSSFRLASLFNNLISELKLDDSDLQE 810
Query: 372 F---LLMMLQTFRASNLL-ELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRR 427
L+ + A+++L E++ R RI + ++G DE L G+++ A+ R
Sbjct: 811 LGCQLITRTVEYAATHVLREIKFRARIPVHGSWTLLGVSDEWSCLREGEIY----ATVRD 866
Query: 428 EFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKR 487
E R+G +EG+V++ ++P +HPGD++ + AV P L H+ + VVF +G R
Sbjct: 867 E--------RTGTYVPIEGRVLITRSPQIHPGDVQFVNAVRHPKLEHLNNVVVFSCEGDR 918
Query: 488 PHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYI 547
+ G DLDGD+Y + + L P Y P P KV TIED+ ++ DYI
Sbjct: 919 SLPSMLGGGDLDGDIYNLILNPNLFPTRTSVAGAYEPLPHKVTPHPCTIEDIADFVIDYI 978
Query: 548 VNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRV-EIY 606
D +G I H+ ADL+P ++CL LA+ ++ AVDF KTG + R +
Sbjct: 979 EADLVGYISILHLRIADLDPKGPSCDECLLLAEKASHAVDFQKTGTPVNFDNLPRAGRLR 1038
Query: 607 PDFMEKQ------DKTCYESQRVIGKLYRAV 631
PDF+ + + + Y S +V+G LYR V
Sbjct: 1039 PDFLAGEVVEPSAESSFYPSDKVLGVLYRNV 1069
>gi|66804721|ref|XP_636093.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
gi|60464394|gb|EAL62541.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
Length = 2417
Score = 245 bits (625), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 203/738 (27%), Positives = 350/738 (47%), Gaps = 86/738 (11%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
+ V +TPS+ F P + S R VR + NF+ + V+E L+ PL
Sbjct: 1193 IRDVFITPSRTIFIQPTLQRSCRAVRKFGSS--NFIVVKIVNESLE--------PLQGVN 1242
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESM 172
N +H R+ L GI++G + + SNSQ+++ S W +++ I +
Sbjct: 1243 N--KHPLHENRIKPILEGGILVGGEIYSYAGNSNSQLREYSSWFVSNQIGTHTVKIWSGI 1300
Query: 173 GDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISA 232
+ NV K+ +G F ++ + + + I I D+ T+ F++G G+I
Sbjct: 1301 ---EHVDNVRKFFRCIGLMFSTTIPTVTLPQNRIYRIQDITRN----THEFTEGCGEIGP 1353
Query: 233 ELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSS--TKLSLRKSMLKYK-----SE 285
ELA+ + +N F T A+Q+R GG KGV+ V+ + + + +R SM+K+ E
Sbjct: 1354 ELAKHLNENYNFRPST-CAYQVRIGGNKGVLVVNNQAPDPSGIYIRPSMVKFNPIDCGDE 1412
Query: 286 STSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL 345
+L+I + S C LNRQ+I+LLSTLG +D+VF Q + Q+ I+ D + +A+
Sbjct: 1413 HRTLEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTNASKQAI 1472
Query: 346 ELMSSGENTNVLKELLMCGYKPDV-------EPFLLMMLQTFRASNLLELRTRTRIFIQN 398
+ PD+ +P++ +L + + ++ + I I++
Sbjct: 1473 -----------------VEFFPDITEGELYQDPYIRRILISLYKLKMERIQQKCHIEIKD 1515
Query: 399 GRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHP 458
R ++G D T +L VFVQ + + R E V+EG V+V KNPC HP
Sbjct: 1516 SRMLLGVCDPTNSLPPNTVFVQLEEEDEDD----DDDGRKYE-KVIEGLVMVIKNPCTHP 1570
Query: 459 GDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFP 518
GD+R L+AVD L H+ + +VF KG P+ E SGSDLDGD YF C+D LI
Sbjct: 1571 GDVRYLKAVDNIRLRHLRNVLVFSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRSES 1630
Query: 519 PMDYTPAPEKVLARDMTIEDVEEYFA---DYIVN---DSLGVICNAHVVHADLEPDKARS 572
Y E V D + FA Y N LG + ++H+ +D A
Sbjct: 1631 ETAYL-VVETVSNNDKKANVFNDPFALSSMYSTNAERQELGKLYHSHLAISD--QYGANH 1687
Query: 573 NQCLELAKLSTIAVDFSKTGVAATIPSGLRVEI----YPDFMEKQDKT--CYESQRVIGK 626
++++K +D+ KTG+ TIP + + + YP +M++++ T Y+S++++GK
Sbjct: 1688 KYSIQISKECFKEIDYPKTGIHGTIPKEVNIRLQTVGYPHYMQRENSTRVYYQSKKIMGK 1747
Query: 627 LYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDY 686
+Y + + I F +++ D VDG+E Y+ A ++Y ++ +L+ +
Sbjct: 1748 MYDQIDQL----VYIGDFLPNISL---DKSNLVDGYEIYLNSAKILYSQYKLQVHSLLRH 1800
Query: 687 YGIKTEAEILSGCIMEMAKSFDKKRDLEA-----IIFAVKSLKKEARAWFNKKNESDS-- 739
Y ++E I+ G + + S +D++ I ++ + E F ++++ +
Sbjct: 1801 YSAESEESIMIGFLDQGFISDKVSKDIKGEMKNDYIKIQQTFENEFLKEFGEQHKENCLL 1860
Query: 740 -SHEDVYAKASAWYHVAY 756
++ K SAWYHVAY
Sbjct: 1861 IHRVNIEKKVSAWYHVAY 1878
>gi|330798142|ref|XP_003287114.1| hypothetical protein DICPUDRAFT_54684 [Dictyostelium purpureum]
gi|325082892|gb|EGC36360.1| hypothetical protein DICPUDRAFT_54684 [Dictyostelium purpureum]
Length = 2341
Score = 245 bits (625), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 215/741 (29%), Positives = 350/741 (47%), Gaps = 97/741 (13%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISS 111
+V +V VTPS++ F P++ +NR +R + E NF+ L +E L+ L L+P
Sbjct: 1181 FVKEVFVTPSRIIFKEPKLERTNRALRRFGSE--NFILLKVANESLEPLRG--LNP---- 1232
Query: 112 TNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRES 171
+H +Y + +GI + K+ + SNSQ D S W + IR
Sbjct: 1233 ----KHP-LYTTIQKYFDSGIELSGTKYYYVGNSNSQHSDFSAWFVNDLAHVFL--IRNW 1285
Query: 172 MGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKIS 231
D + K+A L F ++ + + + II D+ +G + F++G G I
Sbjct: 1286 SQDQSLVMQPRKFARGLSLMFTTTSPSFVIPQRNYYIIDDII--SNG--HNFTEGCGFIG 1341
Query: 232 AELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYK----SES 286
+L+ + + + T A+QIR GG KG++ V T + +RKS +K K E
Sbjct: 1342 KDLSRRINELFHYKSST-CAYQIRIGGAKGMLVVSETVDPDGVYIRKSQIKTKPAHYDEH 1400
Query: 287 TSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALE 346
+L+I + S C LNRQ+I LLS G++DHVF Q + L + L D + + L+
Sbjct: 1401 RTLEICSISTSSNCKLNRQVIALLSCKGVKDHVFYSIQDRYMNYLASTLNDVEYSRKVLD 1460
Query: 347 LMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCL 406
N N ELL + F+ +L T ++ + ++ + I+ R ++G
Sbjct: 1461 EFFKDLNDN---ELLQ-------DNFIRRILITHYKLSIERAQQKSHLDIEKSRNLLGVT 1510
Query: 407 DETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRA 466
D T L + +F+Q + S ++G VVV KNPC HPGD+R+LRA
Sbjct: 1511 DPTRLLPADCIFIQIEQEEE---------DGSRHYVPLKGDVVVTKNPCTHPGDLRILRA 1561
Query: 467 VDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHEL------IPPL----- 515
V++ +LHH+ D +VF G P+ E SGSDLDGD YFVC+D++L IP L
Sbjct: 1562 VNIEALHHLKDVIVFSTYGNVPNFKEISGSDLDGDRYFVCFDNDLMINGNSIPYLGDNLT 1621
Query: 516 -QFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQ 574
+ PP + P K+L V +Y A+ + +G + NAH+ +D A S
Sbjct: 1622 KEDPPQNVYNDP-KLL--------VGQYLAN-VEKQKIGTLYNAHLAISDYYG--ADSVH 1669
Query: 575 CLELAKLSTIAVDFSKTGVAATIPSGLRVEI----YPDFMEKQD---KTCYESQRVIGKL 627
+EL+ +D KTGV +P ++ + YP +M + D K Y+S++V G +
Sbjct: 1670 AIELSIECFKEIDAVKTGVHGEVPRNIQFHLNHFGYPHYMRRDDNSPKKYYQSKKVQGLM 1729
Query: 628 YRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYY 687
+ ++ + I F E+++ + DG+ DY+ A EY N++ +L+ Y
Sbjct: 1730 FDQLEQL----VYIGDFLPEISVNEKNLK---DGYNDYLNSASILYQEYKNKINSLLQRY 1782
Query: 688 GIKTEAEILSGCIMEMAKSF----------DKKRDLEAII--FAVKSLKKEARAWFNKKN 735
G + E +L G M ++F D K + AII F V+ LK +++
Sbjct: 1783 GGEDEESLLVGF---MDQNFSSDYSKNIQDDIKENYRAIIDSFKVEFLKDFGSGIIDEQV 1839
Query: 736 ESDSSHEDVYAKASAWYHVAY 756
+ + +V K SAWY+V+Y
Sbjct: 1840 IKNEHYGEVEKKISAWYYVSY 1860
>gi|290993029|ref|XP_002679136.1| predicted protein [Naegleria gruberi]
gi|284092751|gb|EFC46392.1| predicted protein [Naegleria gruberi]
Length = 464
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 163/474 (34%), Positives = 236/474 (49%), Gaps = 27/474 (5%)
Query: 172 MGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKIS 231
+G+F IK A+YAAR+GQ F + E + S + EIIPD+ + Y F+DG+G+IS
Sbjct: 1 LGNFSHIKVKARYAARIGQCFSHTYEGI---SKEYEIIPDITRNN----YVFTDGVGRIS 53
Query: 232 AELAEIVAKNCGFTI----YTPSAFQIRYGGYKGVVAVDP----TSSTKLSLRKSMLKY- 282
E A + K + Y PSAFQ R GG KGVV VDP S L L KS K+
Sbjct: 54 LEFAVELTKKFQISFAGKEYIPSAFQFRMGGLKGVVVVDPDIHLYSDLDLLLSKSQEKFI 113
Query: 283 KSESTSLDILANSKYQP-CFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKA 341
S S+ +++ SK LNRQLI LLS+ + D VF + + ++ + D
Sbjct: 114 DSSSSEFELITYSKRNRFASLNRQLIALLSSNKVSDSVFLQLLDRDLEEIKKLFNDKKYM 173
Query: 342 HEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRA 401
L +K++ Y F ++ ++ RI +
Sbjct: 174 RRVLRKSQDNIVGKNMKKVASLNYLDSQYDFSKVVQSGEDIKFFYQIEPNGRIILDKALL 233
Query: 402 MMGCLDETGTLESGQVFVQCSA--SRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPG 459
+MG +D G LE +VF+Q S + + D++C G L G V + ++PCLHPG
Sbjct: 234 LMGVVDFYGVLEEDEVFIQLSELENSDSDLYDDNCFVNGGTLS---GTVAITRSPCLHPG 290
Query: 460 DMRVLRAVDVP----SLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPL 515
D+R +AV P L H+ D +VF KG RP N+ SG D DGD + V WD L+
Sbjct: 291 DIRKFKAVTDPEKISKLSHLRDVIVFSQKGNRPAANKMSGGDYDGDFFQVFWDPLLVNFE 350
Query: 516 QFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQC 575
++PPM+Y P + + E+ +YI+ND+LGV+ H+ H D E D RS C
Sbjct: 351 EYPPMNYEGLPPEEKHDGCDYRVIREFLTEYIINDNLGVVAFLHLEHYDKEGDGLRSEPC 410
Query: 576 LELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQ-DKTCYESQRVIGKLY 628
L+LAK + VD++KTGV +P+ L P +M + K Y S+ VIG +Y
Sbjct: 411 LKLAKHHSYQVDYAKTGVRKPLPTELFSNSRPHYMPRVFGKKTYHSEDVIGSIY 464
>gi|429964430|gb|ELA46428.1| hypothetical protein VCUG_02106 [Vavraia culicis 'floridensis']
Length = 2289
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 164/461 (35%), Positives = 232/461 (50%), Gaps = 81/461 (17%)
Query: 221 YCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSML 280
Y ++DGIG+IS +A++VAK T TP+AFQIR+ GYKGV+ V L LRKSM
Sbjct: 935 YVWTDGIGRISNRVADMVAKKLKLT-STPTAFQIRFAGYKGVL-VRANIPHDLMLRKSMR 992
Query: 281 KYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLK 340
K+KS L++++ S+ C+LNRQ+I +L LG+ H F Q E + + + L
Sbjct: 993 KFKSTYNVLEVVSYSQSIECYLNRQIIMILEGLGVPKHNFICLQNEYLMHMYRAINHSL- 1051
Query: 341 AHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGR 400
+ K + G ++ + FR E+ + RIF++NG
Sbjct: 1052 ---------------IGKYCRISGVALVDRMSGALLGRLFR-----EMCAKGRIFVKNGI 1091
Query: 401 AMMGCLDETGTLESGQVFVQ-------CSASRRREFLDN-----------------SCNN 436
+MG +DE G L +VF++ S R + N S +
Sbjct: 1092 VLMGVIDEEGVLGENEVFLRIYEDDGDVSGGRSKRMRSNEIGAEEMRKKELFERALSVVD 1151
Query: 437 RSG---------------------ELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHM 475
RSG + GVV G +VAKNPCLHPGD+R ++ V L H
Sbjct: 1152 RSGVGTADSSADDINTSTGGGVLRDDGVVVGGAIVAKNPCLHPGDIRKVQCVYKKELMHY 1211
Query: 476 VDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAP----EKVLA 531
+ +VF KG+RP N CSGSDLDGD+YFV WD LIPP++ P +Y + E ++A
Sbjct: 1212 KNVLVFSKKGRRPVFNMCSGSDLDGDLYFVSWDARLIPPIEHFPQNYQSSSYLSKEHIVA 1271
Query: 532 RDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKT 591
+DM +F + D LG I NAH+V++D+ Q L+LA L ++ VDF KT
Sbjct: 1272 QDMV-----NFFTRFAKEDELGKISNAHLVYSDVHG--ITDPQALKLAYLFSMGVDFPKT 1324
Query: 592 GVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVK 632
G A +P L YPDFME+ YES RV+G +YR V+
Sbjct: 1325 GYIARLPQNLEPYEYPDFMERMRS--YESVRVMGMMYRRVQ 1363
>gi|452838162|gb|EME40103.1| hypothetical protein DOTSEDRAFT_138071 [Dothistroma septosporum
NZE10]
Length = 947
Score = 243 bits (619), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 183/635 (28%), Positives = 303/635 (47%), Gaps = 84/635 (13%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
V+K+++TP+ Y GP+ +NRV+R Y D+F+R+ F DED SP+
Sbjct: 139 VHKIIITPAGTYLEGPDAEPTNRVLRRYHHSTDHFVRVIFQDEDR--------SPMRHDP 190
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMW----MFASRPELTAAD- 167
++ + R L ++I + F L FS+S ++ S W M + + L A+
Sbjct: 191 RTDQSQIYHMRFKGVLDGSVLICGRAFSFLGFSHSSLRSQSCWFSAPMVSKQGSLVFAEQ 250
Query: 168 IRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGI 227
+ + +GDF I+ AK AAR+GQ+F + ++ + ++ +P+VE FSDG+
Sbjct: 251 VIKELGDFSKIRVPAKCAARIGQNFTDTNASVKLRPEEVFELPNVERNGRD----FSDGV 306
Query: 228 GKISAELAEIVAKNCGFT-IYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYKSE 285
G IS L + V + G + P+A QIR+ G KG+VA+D +L +R +M KY++
Sbjct: 307 GTISERLLQSVHRRYGSKKLLKPTALQIRFQGSKGMVALDSRLPGKRLMIRPNMKKYETA 366
Query: 286 ST-SLDILANS-KYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLD---------AI 334
+T L+I + + P LNR I ++ LG F Q + L AI
Sbjct: 367 ATWDLEICGAAFRPLPMVLNRPFIKVMEDLGTPISTFMDLQNAAMVHLQRMTASCINTAI 426
Query: 335 LTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRI 394
D +A A + + +++ L G + F+ +++ + L +++ + RI
Sbjct: 427 FLDDSEACRATRM------SELIRYLGQIGLDYHHDHFMYSVVEMAVVAKLRDIKYKGRI 480
Query: 395 FIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNP 454
++ G + G +DETG L +++V + G+ VV ++V ++P
Sbjct: 481 PVEQGVTLYGIMDETGYLGPREIYVVTEKAE------------GGKKVVVANDIIVTRSP 528
Query: 455 CLHPGDMRVLRAVDVPS---LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHEL 511
LHPGDM+V+ AVDVP L + + VVF G R ++ G DLDGD+Y + WD +L
Sbjct: 529 ALHPGDMQVVNAVDVPQTSPLKRLSNVVVFSKHGDRDLPSQLGGGDLDGDLYNIIWDPKL 588
Query: 512 IPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKAR 571
P F P DY L RD+ +D+ ++F ++ +D LG+IC H+ AD
Sbjct: 589 RPMRTFQPADYPRVSAVQLDRDVVRKDMSDFFVTFMESDVLGMICTTHLQLADQRSAGVL 648
Query: 572 SNQCLELAKLSTIAVDFSKTGVAATIPSGLR-VEIYPDFM-------------------- 610
C++LA +++ AVDFSKTG+ I R + PDFM
Sbjct: 649 DPDCIKLAGMASTAVDFSKTGIPVNIKDIPRYTRVKPDFMAPSPRVVVSDGGFLDFEEDD 708
Query: 611 ------------EKQDKTCYESQRVIGKLYRAVKD 633
E++ Y S++ +G LYRA+ +
Sbjct: 709 DGEDDAFEGLDTERRRTRFYRSEKALGHLYRAIDE 743
>gi|281205109|gb|EFA79302.1| hypothetical protein PPL_07720 [Polysphondylium pallidum PN500]
Length = 3481
Score = 241 bits (616), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 181/576 (31%), Positives = 281/576 (48%), Gaps = 76/576 (13%)
Query: 46 LDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVL 105
L+ ++ K VTPS++ F P + +NR +R + D FL + +E + S
Sbjct: 1135 LNANFCWIKKAYVTPSRILFQRPLMVQTNRAIRLFGP--DRFLMVQITEETISD--SIDY 1190
Query: 106 SPLISSTNEERHTTIYERVLSTLRNGI-VIGDKKFETLAFSNSQVKDNSMWMFASRPELT 164
PLIS + +L L +GI V G ++ L +SNSQ++ N+ W + P+
Sbjct: 1191 QPLIS-----------KLMLDKLIDGIAVAGYGQYHFLGYSNSQLRKNTCWFYC--PD-- 1235
Query: 165 AADIRESMGDFRDIKNVA-----------KYAARLGQSFGSSREALHVDSSDIEIIPDVE 213
A D + D+K + +Y L F S+ +L + + I +PDV
Sbjct: 1236 AIDSLDDAPSLDDVKQILIGDTSIYTEPRQYLRSLSLVFPSTTPSLLIPAEHIHEVPDVV 1295
Query: 214 VEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKL 273
+ G FSDGIG I +A V + T AFQIR GYKGVV + PT +
Sbjct: 1296 SANTG--QIFSDGIGYIGKRVALQVIEFASLPEET-CAFQIRIAGYKGVVTIHPTIDDGI 1352
Query: 274 SLRKSMLKYKSESTS-----LDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGV 328
LR SM K++++ T L+I++ + PC LNRQ+I LLS LG+ D F + Q+E +
Sbjct: 1353 YLRPSMKKFQADLTQQHNCILEIISINGDNPCHLNRQVINLLSGLGVPDQYFLRLQKEAL 1412
Query: 329 AQLDAILTDP---LKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNL 385
L +L +P ++ E L + + E KE L +P + ++ ++
Sbjct: 1413 MDLADLLHNPAESIRCSEDLPWLRTIE-----KEDLRS------DPMIRSLVHLVYQKSI 1461
Query: 386 LELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVE 445
E + I I NG+ ++G LDETG LE+GQV++ N N ++G+ V++
Sbjct: 1462 AEYSDKCFIPIANGKTIIGVLDETGLLEAGQVYI------------NIYNTKNGQSMVIQ 1509
Query: 446 GKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFV 505
G V V KNPCLHPGD+R+L+ D+ L H+ + VVF A+G P +CSGSDLDGD YF+
Sbjct: 1510 GAVAVCKNPCLHPGDVRILQGTDIELLSHLKNVVVFSARGDNPDFKKCSGSDLDGDRYFI 1569
Query: 506 CWDHELIPPL-QFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHAD 564
C+D E+I + Q+ Y + + + + I +LG I +H+ +D
Sbjct: 1570 CYDPEVISTVRQYEDYHYEDPIKVKQTIPINQSTILAQYLKSIDKGTLGKIALSHLAVSD 1629
Query: 565 ----LEPDKARSNQCLELAKLSTIAVDFSKTGVAAT 596
L+P + L+ +I VD KTGV +
Sbjct: 1630 RLTPLDP------LAIALSIQHSIEVDSPKTGVHVS 1659
>gi|390594179|gb|EIN03593.1| RdRP-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 973
Score = 241 bits (616), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 179/566 (31%), Positives = 282/566 (49%), Gaps = 57/566 (10%)
Query: 48 DGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSP 107
DGL V+VTPS + SNRV+RS+PD +F+R+ F +ED +L
Sbjct: 427 DGLFDCLHVIVTPSSIVPQEQYPDRSNRVIRSFPDHQQHFVRVQFTEEDYHQLRF----- 481
Query: 108 LISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPEL---- 163
+ + + R+ LRNG +G + FE LA+S S +KD+++W F R ++
Sbjct: 482 ---DRDVDGEHFVKTRIGGVLRNGFQVGGRTFEFLAYSQSALKDHAVW-FVRRFKIDNQW 537
Query: 164 -TAADIRESMGDF-RDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDD-GIT 220
T IRES+G F + I + Y AR+ Q+F ++ ++ + + +I IPD+E D G T
Sbjct: 538 ITGNTIRESLGSFDKVIYCPSLYGARMSQAFTATDPSVTITAEEIVRIPDIERRDSTGRT 597
Query: 221 YCFSDGIGKISAELAEIV-------AKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK- 272
+ F+DG+G IS ELA+ + ++ + P AFQIR G KG+V+V+ +
Sbjct: 598 WQFTDGVGTISPELAQEITTALVARSRRKKGRYFRPRAFQIRIAGSKGMVSVNHKLHGRV 657
Query: 273 LSLRKSMLKYKSESTSLDI-LANSKYQPC--FLNRQLITLLSTLGIRDHVFEKKQREGVA 329
L LR SM+K++S + SLDI +A + +P LNR L+ LL LG+ F K Q V
Sbjct: 658 LCLRPSMIKFESPN-SLDIEIAKTFDKPGKFLLNRPLVMLLEGLGVPADEFMKLQNAAVE 716
Query: 330 QLDAILTDPLKAHEALELMSSGENTNVLK----------ELLMCGYKPDVEPFLLMMLQT 379
A KA + LE G + +L G + +E +
Sbjct: 717 DTKAASRSLTKAAQILETHGLGTAFRLTSVFLGLERLGVDLTRRGNRFRLEDEFIHRAIA 776
Query: 380 FRASNLL-ELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRS 438
+ +++L EL+ RI + + ++G D G L+ G+VF S
Sbjct: 777 YAINHVLRELKHHARIPVPSSWTLVGIADIHGVLKEGEVFACIQPSH------------G 824
Query: 439 GELGVVEGKVVVAKNPCLHPGDMRVLRAVDVP------SLHHMVDCVVFPAKGKRPHTNE 492
GE ++G V++ ++P +HPGD+++LRAV P L + + V+F KG RP +E
Sbjct: 825 GEKIYLQGPVMITRSPVIHPGDVQMLRAVGRPPAGSIYDLEPIPNTVIFSIKGSRPTASE 884
Query: 493 CSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSL 552
G DLDGDV+ V ++ P + P Y A K+L R + DV ++ D+I ND+L
Sbjct: 885 LGGGDLDGDVFNVSQYFDIFPKKCYMPASYATAERKMLDRPSDVGDVIDFVVDFINNDNL 944
Query: 553 GVICNAHVVHADLEPDKARSNQCLEL 578
G+I ++ AD P+ + CL+L
Sbjct: 945 GLIATNWLIIADQSPESIFDDACLQL 970
>gi|302682738|ref|XP_003031050.1| hypothetical protein SCHCODRAFT_235575 [Schizophyllum commune H4-8]
gi|300104742|gb|EFI96147.1| hypothetical protein SCHCODRAFT_235575 [Schizophyllum commune H4-8]
Length = 1178
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 192/635 (30%), Positives = 307/635 (48%), Gaps = 66/635 (10%)
Query: 56 VLVTPSKVYFSGPEISLSNRVVRSY-PDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNE 114
++VTP+++ F GP SNR++RSY D+FLR+SF DED KL+ + S+
Sbjct: 391 LIVTPTRMIFQGPFPERSNRIIRSYDAKHHDSFLRVSFTDED--KLHYRFDRDVDGSS-- 446
Query: 115 ERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM----FASRPELTAADIRE 170
+ R+ L+NGI + KF+ LA+S S +K+++++ + E+ AA I
Sbjct: 447 ----MVRSRIERFLKNGICLAGHKFDFLAYSQSALKEHTVYFVKPFWVGIREVNAATIIA 502
Query: 171 SMGDFRDIKN---VAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGI 227
+G+F ++ A+YAARL Q+F ++ ++ V++ ++ + D+ D Y F+DG+
Sbjct: 503 GIGNFEGSEDRFCPARYAARLSQAFTATDASVIVEAEEVFPVNDISTPDGA--YHFTDGV 560
Query: 228 GKISAELA-------EIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSM 279
G +S +A + K T P+AFQIR+ G KG+++VD ++ LR SM
Sbjct: 561 GTMSKGMASETWAELQRWRKRTKKTKNVPAAFQIRFMGSKGMLSVDHALHGREVCLRHSM 620
Query: 280 LKYKSESTSLDILANSKYQPC--FLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTD 337
+K++S S +L+I A + +P +LNR LI ++ LG+ F + Q V + +
Sbjct: 621 IKFESSSDTLEI-ARAFDRPGRYYLNRPLIMVMEGLGVPYESFLRHQEAAVQNVHSSSES 679
Query: 338 PLKAHEALELMSSGENTNVLKELL----MCGYKP-DVEPFLLMMLQTFRASNLLELRTRT 392
K + E G V LL +C K D F M++ L EL+ R
Sbjct: 680 LAKCAKMFESFGLGTAFRVPSLLLNLEKLCNVKNLDANVFYRQMIEFATHHVLRELKNRA 739
Query: 393 RIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAK 452
RI I ++G D L G++FV + S E+ +EG V++++
Sbjct: 740 RIPIPGAYTLVGVADVHRYLGPGEIFVCIRP------------HDSNEVTYLEGDVLISR 787
Query: 453 NPCLHPGDMRVLRAVDVP------SLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVC 506
+P +HPGD++V+RA+ P + + + VVF +G RP G DLDGD Y +
Sbjct: 788 SPTIHPGDVQVVRAIGRPKAGSPFAKEPLANTVVFSVRGTRPLPTMLGGGDLDGDEYNLI 847
Query: 507 ---WDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHA 563
E P Y PAP K L R + DV ++ D+I D LG++ ++ A
Sbjct: 848 PLNSHPEFRPARTVEAASYAPAPRKTLTRAADMRDVADFVIDFINYDVLGIVAIHWLIIA 907
Query: 564 DLEPDKARSNQCLELAKLSTIAVDFSKTG--VAATIPSGLRVEIYPDF-----MEKQDKT 616
D CL L++L + AVDF K+G VA L PD+ ++
Sbjct: 908 DQSNKSIFDEDCLTLSQLHSDAVDFQKSGQPVALDRIPALHFRAKPDWNAPETVKANSAR 967
Query: 617 CYESQRVIGKLYRAVK----DIAPPTATIKSFTKE 647
Y+SQR IG+L RA+ A P +TI + E
Sbjct: 968 YYKSQRAIGRLARAITLPSLKEADPRSTIPPLSDE 1002
>gi|169623159|ref|XP_001804987.1| hypothetical protein SNOG_14810 [Phaeosphaeria nodorum SN15]
gi|160704927|gb|EAT77662.2| hypothetical protein SNOG_14810 [Phaeosphaeria nodorum SN15]
Length = 1674
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 195/583 (33%), Positives = 289/583 (49%), Gaps = 74/583 (12%)
Query: 50 LIYVNKVLVTPSKVYFSGPEISL------SNRVVRSYPDEIDNFLRLSFVDEDLDKLYST 103
LI V+ +P K EI+L SNRV + + +D F+ LSF D L
Sbjct: 40 LIKCVSVISSPQK-----QEITLRYVLAPSNRV--TMDEVLDRFVLLSFPDFRLQ----- 87
Query: 104 VLSPLISSTNEERHTTIYER---VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASR 160
P +++ + R T E + L +GI I + SNSQ+K S +M+A+
Sbjct: 88 --WPPVAANDALRPATGRENGDWITKMLVSGITINAISYHFFGHSNSQLKSRSCFMYAAS 145
Query: 161 PELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGIT 220
E A I E MGD +++VAK + R+G F S+ + + S + I DV +D
Sbjct: 146 KEEVARKI-EGMGDLSKLRSVAKKSKRIGLLFSSAEVSTMLPSERCQDIDDVTSKD---- 200
Query: 221 YCFSDGIGKISAELAEIVAKNCGFTI----YTPSAFQIRYGGYKGVVAVDPTSS--TKLS 274
Y F+DG G +S + A+++A+ Y PS +QIRY GYKGV+ +DPT S T++
Sbjct: 201 YIFTDGCGLMSPQFAKLLAQRRNIVFRDKRYLPSVYQIRYRGYKGVLTLDPTLSGQTQVQ 260
Query: 275 LRKSMLKYK-SESTSLDILANSK-YQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLD 332
R SM K+K S S ++ SK Y LN +++ LL TLGI + KQ + LD
Sbjct: 261 FRASMRKFKDSPDYSFAVVDYSKPYAFGSLNDEIVVLLHTLGISEKTLLAKQTQ---HLD 317
Query: 333 AILT----DPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLEL 388
I DP A + +S T + ++LL+ G + V P LL +++ A ++
Sbjct: 318 FIQNVQGGDP---RSAFQFLSYINRTELAEKLLLEGPE-SVRPTLLSLVKQEYA-RMINK 372
Query: 389 R--TRTRIFIQNGRAMMGCLDET------GTLESGQVFVQCSASRRREFLDNSCNNRSGE 440
R R RI + R + G D T G L+ G+ FV+ + + R+
Sbjct: 373 RDEQRCRILVPKSRLLFGVCDPTAKDGCPGRLKEGECFVRIT---------QDGDGRAQT 423
Query: 441 LGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDG 500
++ +V+V +NPCLHPGD++ + VD+P H+VDC+VF +GKRP + SG DLDG
Sbjct: 424 --IINTEVLVTRNPCLHPGDLQKFKVVDIPEFSHLVDCIVFTTQGKRPSADLMSGGDLDG 481
Query: 501 DVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHV 560
D +FV WD +L+P P Y E + D+T + EYFA Y N SLG + N ++
Sbjct: 482 DKFFVTWDSDLVPSTVAEPAQYPGGKELITFGDVTGDSRAEYFARY-TNASLGKVKNLYM 540
Query: 561 VHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRV 603
A L A S QC +L +L + VD G IP L+V
Sbjct: 541 KWARL--GNAMSPQCQQLNRLFSQCVD----GNHIRIPQNLKV 577
>gi|308469043|ref|XP_003096761.1| hypothetical protein CRE_23681 [Caenorhabditis remanei]
gi|308241452|gb|EFO85404.1| hypothetical protein CRE_23681 [Caenorhabditis remanei]
Length = 1721
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 209/744 (28%), Positives = 339/744 (45%), Gaps = 118/744 (15%)
Query: 48 DGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSP 107
+G V KV++TP+++ F PE ++NR + + +R +F D++ K+ L
Sbjct: 475 EGYRKVRKVILTPTRIIFLAPETIMANRAINGADHDGTRIIRATFRDDNFQKMRYNQLRD 534
Query: 108 LISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAA- 166
L+ ER L+ LR+G VI + F LA SNSQ++D + + A
Sbjct: 535 LLE-----------ERTLNHLRDGFVIYGRGFSYLASSNSQMRDGGAYFMERWNKTQLAE 583
Query: 167 --------------------DIRESMGDFRDIKNVAKYAARLGQSFGSSR--EALHVDSS 204
D R+ +G F ++ K ARLGQ F +R + + +
Sbjct: 584 YKERYPRIRFPDPSFKPKIIDYRKKLGKFSKTGSIPKAMARLGQCFTQARRCDGVEICLQ 643
Query: 205 DIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVA 264
D +I D V G Y F+DG+G ISA LA + ++ PSA+QIR+ G KG++A
Sbjct: 644 DYTMIVDA-VGGAG-QYKFTDGVGCISARLAAKICQSISIKC-LPSAYQIRFRGLKGMLA 700
Query: 265 VDPT-----------------------------SSTKLSLRKSMLKYKS-----ESTSLD 290
++P+ + K R S LK+ S E ++
Sbjct: 701 IEPSIDEIADYFLNIYRKGFMIKESIESADLEPYTFKCLFRGSQLKFHSSRGKVEEWPIE 760
Query: 291 ILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPL----------- 339
++ S P LN+ I +L + + K + A+++ +L+ +
Sbjct: 761 MVKWSSPTPVTLNKPFINILDQVSAMQSL--KCHKRVTARIEELLSMEMVNYSKWIVNEE 818
Query: 340 KAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQN- 398
+ LE M + L+ G+ EPF +++ S++ L + +I I +
Sbjct: 819 QCRNRLEGMPRRVHFATLER--KYGFVLSAEPFFRSIVKAAIDSSMSRLLRKLQIPIPSH 876
Query: 399 -GRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGV-VEGKVVVAKNPCL 456
GR++ G +DETG L+ GQVFV R E +DN + + G + GKV+V K P L
Sbjct: 877 LGRSVFGVVDETGQLQYGQVFV-----RYTENVDNKSPLK--DFGTTLTGKVLVTKFPSL 929
Query: 457 HPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ 516
GD+R+ AVD+P L+H+ D +VFP G R +E +GSDLDGD Y V WD EL
Sbjct: 930 CEGDVRMYEAVDIPELYHLKDVIVFPQTGPRSQPDEMAGSDLDGDEYAVIWDAELFFERN 989
Query: 517 FPPMDYTP-APEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQC 575
P Y+ PE + ++A+Y+ + +GV H+ +D S+ C
Sbjct: 990 EPAFAYSSEKPEVPFTSSEMDHKMNLFYAEYMKQEDVGVTSTNHLHQSD--QFGINSDVC 1047
Query: 576 LELAKLSTIAVDFSKTGVAA---------TIPSGL-----RVEIYPDFMEKQ--DKTCYE 619
+A + +A+D+SK+GVA +G+ R E PDF + Y+
Sbjct: 1048 NAIAVKNAMALDYSKSGVAPPPLTSEWTFNHVTGINEPPERSERRPDFAANRYNGNVSYQ 1107
Query: 620 SQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNR 679
S R++G+L+R ++ + A+ S K+V ++ D + +E Y A Y+ +
Sbjct: 1108 SSRLLGQLHRELRCVNDVLAS--SSAKQVPIE-IDPLLVWKRWEKYAEVARVQMIRYNGQ 1164
Query: 680 LGNLMDYYGIKTEAEILSGCIMEM 703
L ++MD +GI TEAEI SGC E+
Sbjct: 1165 LRSIMDTFGINTEAEIFSGCYREI 1188
>gi|336388940|gb|EGO30084.1| RNA-directed RNA polymerase [Serpula lacrymans var. lacrymans S7.9]
Length = 1246
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 167/487 (34%), Positives = 246/487 (50%), Gaps = 37/487 (7%)
Query: 122 ERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMF-ASRPELTAADIRESMGDFRDIKN 180
E ++ ++ G+ + ++ SNSQ++ + + A+ E A I + +GDF I N
Sbjct: 66 EYIVRLMKAGLFLNGLQYRFYHHSNSQLRSRTCFFREANSDEELDARIYK-LGDFGRIMN 124
Query: 181 VAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAK 240
+AK A R+G F ++ L +D + I D+ V D FSDG G ++ A V+K
Sbjct: 125 IAKRAKRIGLLFSAAEVDLQLDPKWVTDIDDITVGD----IVFSDGCGLMAKRFAVQVSK 180
Query: 241 NCGFTI----YTPSAFQIRYGGYKGVVAVDPTSSTK----LSLRKSMLKYKS-ESTSLDI 291
YTP+ FQIRY GYKGV+ +DP + + RKSM K+ + E S +
Sbjct: 181 AKSIIFRNQRYTPTVFQIRYLGYKGVLMLDPKLDEEKKFLVKFRKSMKKFSTTEDKSFSV 240
Query: 292 LANSK-YQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSS 350
+ S+ Y LN ++ LLS+LGI D F+ KQR ++ D +KA ++ +SS
Sbjct: 241 VGYSQPYSFGRLNNDIVVLLSSLGISDEKFQAKQRAYFEWIEGASHDAVKA---IDFLSS 297
Query: 351 GENTNVLKELLMCGY-KPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDET 409
++ + LL+ G P V + + A L R RTR+ I R + G D
Sbjct: 298 LGKYSLAERLLLDGMDSPAVSKEIRALQNAEVAQFLKNNRPRTRMIIHKSRLLYGVCDPY 357
Query: 410 GTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDV 469
G L+ GQV ++ ++SR G + G ++V +NPCLHPGD LRAVD
Sbjct: 358 GVLKEGQVQIRITSSR------------GGATTPINGDILVVRNPCLHPGDCLKLRAVDH 405
Query: 470 PSLHHMVDCVVFPAKGK---RPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAP 526
PSL H++DC+VF G+ +P SG DLDGD +FVCWD +L+P L P DY P
Sbjct: 406 PSLSHLLDCIVFATVGRPGHQPAPAMSSGGDLDGDKFFVCWDPDLVPSLVHEPYDYPPNK 465
Query: 527 EKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAV 586
E+V +D+T D+ YFA Y N SL + H PD A QC EL L + +V
Sbjct: 466 ERV-GKDVTRMDLATYFASY-NNMSLAKVSALHQKWVRSSPDGALCVQCQELNALHSQSV 523
Query: 587 DFSKTGV 593
D + +
Sbjct: 524 DGGRIKI 530
>gi|336364173|gb|EGN92535.1| hypothetical protein SERLA73DRAFT_99065 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1660
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 167/487 (34%), Positives = 246/487 (50%), Gaps = 37/487 (7%)
Query: 122 ERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMF-ASRPELTAADIRESMGDFRDIKN 180
E ++ ++ G+ + ++ SNSQ++ + + A+ E A I + +GDF I N
Sbjct: 91 EYIVRLMKAGLFLNGLQYRFYHHSNSQLRSRTCFFREANSDEELDARIYK-LGDFGRIMN 149
Query: 181 VAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAK 240
+AK A R+G F ++ L +D + I D+ V D FSDG G ++ A V+K
Sbjct: 150 IAKRAKRIGLLFSAAEVDLQLDPKWVTDIDDITVGD----IVFSDGCGLMAKRFAVQVSK 205
Query: 241 NCGFTI----YTPSAFQIRYGGYKGVVAVDPTSSTK----LSLRKSMLKYKS-ESTSLDI 291
YTP+ FQIRY GYKGV+ +DP + + RKSM K+ + E S +
Sbjct: 206 AKSIIFRNQRYTPTVFQIRYLGYKGVLMLDPKLDEEKKFLVKFRKSMKKFSTTEDKSFSV 265
Query: 292 LANSK-YQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSS 350
+ S+ Y LN ++ LLS+LGI D F+ KQR ++ D +KA ++ +SS
Sbjct: 266 VGYSQPYSFGRLNNDIVVLLSSLGISDEKFQAKQRAYFEWIEGASHDAVKA---IDFLSS 322
Query: 351 GENTNVLKELLMCGY-KPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDET 409
++ + LL+ G P V + + A L R RTR+ I R + G D
Sbjct: 323 LGKYSLAERLLLDGMDSPAVSKEIRALQNAEVAQFLKNNRPRTRMIIHKSRLLYGVCDPY 382
Query: 410 GTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDV 469
G L+ GQV ++ ++SR G + G ++V +NPCLHPGD LRAVD
Sbjct: 383 GVLKEGQVQIRITSSR------------GGATTPINGDILVVRNPCLHPGDCLKLRAVDH 430
Query: 470 PSLHHMVDCVVFPAKGK---RPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAP 526
PSL H++DC+VF G+ +P SG DLDGD +FVCWD +L+P L P DY P
Sbjct: 431 PSLSHLLDCIVFATVGRPGHQPAPAMSSGGDLDGDKFFVCWDPDLVPSLVHEPYDYPPNK 490
Query: 527 EKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAV 586
E+V +D+T D+ YFA Y N SL + H PD A QC EL L + +V
Sbjct: 491 ERV-GKDVTRMDLATYFASY-NNMSLAKVSALHQKWVRSSPDGALCVQCQELNALHSQSV 548
Query: 587 DFSKTGV 593
D + +
Sbjct: 549 DGGRIKI 555
>gi|403413304|emb|CCM00004.1| predicted protein [Fibroporia radiculosa]
Length = 1503
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 200/707 (28%), Positives = 337/707 (47%), Gaps = 67/707 (9%)
Query: 42 PAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLY 101
P + L G + V TP+++ GP +S SNRV+R YPD D+FLR+ F DE D+L
Sbjct: 398 PPIPLPPGHFLCHHVTYTPTRMILEGPYVSQSNRVIRRYPDHQDHFLRVDFRDE--DRLQ 455
Query: 102 STVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFAS-- 159
+ S + +++RV LR+G + + FE LA+S S ++++++W
Sbjct: 456 YRWAREVDGS------SLLFDRVGGVLRSGFELAGRYFEFLAYSQSALREHAVWFINPFY 509
Query: 160 RPE---LTAADIRESMGDFRD-IKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVE 215
PE +TA IR+S+GDF I+ +KYAARL Q+F ++ ++ + E +PD+ +
Sbjct: 510 HPEEGHITAQTIRDSLGDFSGVIRQPSKYAARLAQAFTATDPSVRITRGQWEEMPDLGEK 569
Query: 216 DDGITYCFSDGIGKISAELAEIV----------AKNCGFTIYTPSAFQIRYGGYKGVVAV 265
Y F+DG+G IS EL ++ + G PSA+QIR+ GYKG+V +
Sbjct: 570 ----PYEFTDGVGTISTELGNLIWDALCASRPENRRRGL---KPSAYQIRFLGYKGMVVI 622
Query: 266 DPT-SSTKLSLRKSMLKYKSESTSL-DI-LANSKYQP--CFLNRQLITLLSTLGIRDHVF 320
D K+ LR SM K+++ L +I +A + +P +LNR LI +L G+ F
Sbjct: 623 DEQLQGIKMHLRPSMNKFRAHDDDLAEIEIARAFERPGTSYLNRPLIMILEDRGVDKKAF 682
Query: 321 EKKQREGVAQLDAILTDPLKAHEALELMSSGENTN---VLKEL--LMCGYKPD------V 369
Q + K+ L+ + G++ +L+ L + G+K +
Sbjct: 683 INLQERAKTDIYTASDSITKSVSMLKAHTLGKSYGLDFILQSLQNIGMGFKHEKSIHVLQ 742
Query: 370 EPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDE-TGTLESGQVFVQCSASRRRE 428
+PF+ ++ + L +++ RI I + ++G DE + +G V C ++ E
Sbjct: 743 DPFIERLIHYSKNHVLRDIKHGARIPIPDSYLLVGVADEGPAYVHAGMENVFC--LKKGE 800
Query: 429 FLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS------LHHMVDCVVFP 482
N E ++G VV++++P +HPGD++ + A+ P ++ + VV P
Sbjct: 801 IFACVQNADDPEPTYLKGSVVISRSPVVHPGDVQRVWAIGSPPPDKVCFFRNLKNVVVLP 860
Query: 483 AKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEY 542
+ G R + G DLDGD+Y + L+P P Y A + L RD TI D+ ++
Sbjct: 861 SAGGRSLASCLGGGDLDGDLYSIIKHGPLLPTEHEDPASYLSAGTRTLDRDSTIADICDF 920
Query: 543 FADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATI---PS 599
+Y+ +D LG++ + H++ AD +CL LA+L + AVD+ K G+ I P
Sbjct: 921 VVEYLNSDVLGLLSDRHLIIADQSKHGTNDTKCLSLAELCSQAVDYPKNGIPVDIHDSPH 980
Query: 600 GLRVEIYPDFMEKQDKTC-----YESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYD 654
L + PD+ + +D YES R +G L+R + + P + F A +
Sbjct: 981 WL-IPYKPDWHQAEDAAPRHTDYYESHRALGDLFRNIAIVDPSLVSPAEFMNGTASKPKP 1039
Query: 655 -TDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCI 700
+D YI D Y D + + + T+ E+ CI
Sbjct: 1040 LSDPISKALRHYIQDQLHYFFNQDEHVAEMTKLFQRYTD-ELRYICI 1085
>gi|389746474|gb|EIM87654.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 976
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 220/728 (30%), Positives = 343/728 (47%), Gaps = 89/728 (12%)
Query: 33 VLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSF 92
V +RF P+ + D +++TP+ GP SN V+R + D F+R+SF
Sbjct: 164 VPRKRFAIPPSETVFDAY----TLILTPTSKILEGPLPDQSNSVLRRFGHH-DCFIRVSF 218
Query: 93 VDEDLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDN 152
DE+ L P +S E T R S + GI + + FE L +S S ++++
Sbjct: 219 QDENHTPLRR---DPSGTSIQELLRT----RYKSAMVKGIPLAGRHFEFLGYSMSGLREH 271
Query: 153 S---MWMFASRPE--LTAADIRESMGDFRDIKN-VAKYAARLGQSFGSSREALHVDSSDI 206
S M F S +TA IR +G+F I N A AAR Q+F +S ++ + S++I
Sbjct: 272 SIIFMQAFESDDGSLMTADRIRSLLGNFSHISNKPALLAARWAQAFSASDPSVTLQSAEI 331
Query: 207 EIIPDVEVEDDGITYCFSDGIGKISAELAEIVAK-------NCGFTIYTPSAFQIRYGGY 259
+ I D + F+DG G IS LA V K PS FQIR GG
Sbjct: 332 QRIGDKRSPSGSL---FTDGCGTISESLARDVWKFLQRHRRRAASMRLVPSCFQIRIGGA 388
Query: 260 KGVVAVDPTSSTKL-SLRKSMLKYKSESTSLDI-LANSKYQPC--FLNRQLITLLSTLGI 315
KG++ DP K+ LR S K++++S +L + +A++ +P FLNR LI LL LG+
Sbjct: 389 KGILFQDPNLIGKMVCLRPSQTKFENDSEALTLDIASTSSRPIRMFLNRSLILLLEFLGV 448
Query: 316 RDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGEN-------TNVLKEL-LMCGYKP 367
+ VF Q++ ++ L+A + G + N++ +L L G
Sbjct: 449 KPDVFMALQKDATDAVERARHSFLEAAKLFSHHGFGSSFRIASLFNNLVTQLKLDEGDLQ 508
Query: 368 DVEPFLLMMLQTFRASNLL-ELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRR 426
+E +L + A+++L E++ R RI + ++G DE G L G++F A+ R
Sbjct: 509 GLECQILTKSIEYAATHVLREIKFRARIPVHGSWTLLGVSDEWGCLREGEIF----ATVR 564
Query: 427 REFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGK 486
E SG ++G +++ ++P +HPGD++++ AV P L H+ + VVF +G+
Sbjct: 565 DE--------HSGTSVEIQGPMLITRSPQIHPGDVQMVTAVRRPELAHLTNVVVFSCEGE 616
Query: 487 RPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADY 546
R + G DLDGD+Y + D +L P Y P KVL RD TI+DV ++ +Y
Sbjct: 617 RSLPSMLGGGDLDGDIYNLILDPDLFPTHTCEAGGYVGLPHKVLDRDCTIDDVADFVINY 676
Query: 547 IVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAAT---IPSGLRV 603
I D +G I H+ ADL P+ S CL LA+ ++ AVDF KTG +P R
Sbjct: 677 IEADLVGYIAILHLRIADLSPEGPNSKDCLLLAEKASHAVDFPKTGTPTNFDDLPRAPRG 736
Query: 604 EIYPDFM-----EKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDME 658
PDF+ + + Y S +V+G+L+R V ++ D D E
Sbjct: 737 P-KPDFLGSETVDPSSSSFYPSNKVLGRLFR-----------------NVPLEIVDADHE 778
Query: 659 VDGFEDYITDAFKYKTEYDN-RLGNLMDYYG----IKTEAEIL----SGCIMEMAKSFDK 709
F I DA + RLG L +G + E E++ S +ME+AK+ +
Sbjct: 779 GSVFGSTIIDALDRAARLGHVRLG-LPVIHGHSDDLVEEMELMMDAYSEQLMEIAKAHTQ 837
Query: 710 KRDLEAII 717
R A +
Sbjct: 838 SRAPNAFL 845
>gi|169844306|ref|XP_001828874.1| RNA-directed RNA polymerase 2 [Coprinopsis cinerea okayama7#130]
gi|116509986|gb|EAU92881.1| RNA-directed RNA polymerase 2 [Coprinopsis cinerea okayama7#130]
Length = 1232
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 198/652 (30%), Positives = 313/652 (48%), Gaps = 87/652 (13%)
Query: 40 TSPAVALDDGLIY-VNKVLVTPSKVYFSGPEISLSNRVVRSY-PDEIDNFLRLSFVDEDL 97
T+P + DG +Y V +TP+K+ GP SNRV+R+Y P ++FLR++F DE
Sbjct: 409 TTPTLEPTDGSLYQAQHVTITPTKILLEGPFPERSNRVIRAYEPRHQESFLRVTFADEGR 468
Query: 98 DKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMF 157
+ S + + + ER L NG+ I + F LA+S S +K++S+W
Sbjct: 469 LQYRS-------NDRELDHEAFVRERFGEFLLNGLTIAKRHFRFLAYSQSALKEHSVWFV 521
Query: 158 -----ASRPELTAADIRESMGDFRDI-------KNVAKYAARLGQSFGSSREALHVDSSD 205
+ A I S+G+F + A+YAARL Q+F ++ +A ++ +
Sbjct: 522 KPFVDTKHGLVNAESIIHSLGNFDGLDFDSQLMHCPARYAARLSQAFTAT-DACIIEVEE 580
Query: 206 IEIIPDVEV-EDDGITYCFSDGIGKISAELAEIVAKNCGFTIYT-------PSAFQIRYG 257
I D+EV +G YCF+DG+G +S ELA + K+ T P+A+Q+R+
Sbjct: 581 IINGRDIEVVSPEGQKYCFTDGVGTLSPELAREIWKHLKRTKRRARSVKGHPAAYQVRFM 640
Query: 258 GYKGVVAVD-PTSSTKLSLRKSMLKYKSESTSLDILANS--KYQPCFLNRQLITLLSTLG 314
G KG+++VD + + LR SM+K+++ ++ +A S + P FLNR LITLL LG
Sbjct: 641 GSKGMLSVDYRLQGSTIYLRPSMIKFEAPNSRAIEIARSFDRPTPYFLNRPLITLLEGLG 700
Query: 315 IRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGEN---TNVLKELLMCGYKPDVEP 371
+ F+ Q V + + A L+ G + +V+ L G +
Sbjct: 701 VPLSTFKFFQDRAVRETQQAASSLATAAAMLDTYGLGASFRLPSVMNSLNKLGIPVLNQD 760
Query: 372 FLLMMLQTFRASNLLEL-RTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFL 430
L + +++L L + RI + ++G D L+ Q+F
Sbjct: 761 RFLSRAMEYAINHILRLLKNHARIPVPGAWTLVGVADVHRFLQPRQIFAYV--------- 811
Query: 431 DNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAV-----DVPSLHH-MVDCVVFPAK 484
N+R L EG V+++++P +HPGD+++++A+ D P H + + VVF
Sbjct: 812 -KPLNSRGIYL---EGPVLISRSPTIHPGDVQLVQAIGHPPPDSPFAHEPLANTVVFSVL 867
Query: 485 GKRPHTNECSGSDLDGDVYFVCWDHELIP----------------PLQFPPMDYTPAPEK 528
G RP + G DLDGD+Y LIP PLQ P Y PA K
Sbjct: 868 GDRPLPSCLGGGDLDGDIY------NLIPLEDPQRPELRGFTPVRPLQ-APSQYAPAQRK 920
Query: 529 VLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDF 588
+L R T+ DV E+ +YI++D LG+I ++ AD P + CL+LA L + AVD+
Sbjct: 921 ILDRKATMRDVAEFVMEYILSDVLGIIAINWLIIADQSPRGIYDSDCLKLADLHSDAVDY 980
Query: 589 SKTG--VAATIPSGLRVEIYPDFM--EKQDKTC----YESQRVIGKLYRAVK 632
KTG VA T L+ PD+ E D + Y S + IGKL+RA++
Sbjct: 981 PKTGNPVALTNIPRLKYRTKPDWNAPETVDTSASGNYYTSSKAIGKLFRAIE 1032
>gi|409083384|gb|EKM83741.1| hypothetical protein AGABI1DRAFT_66661 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1198
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 189/643 (29%), Positives = 328/643 (51%), Gaps = 77/643 (11%)
Query: 47 DDGLIYVN-KVLVTPSKVYFSGPEISLSNRVVRSYPDE-IDNFLRLSFVDEDLDKLYSTV 104
+DG Y + V++TP+ + GP SNRV+R Y + ++FLR++F D++ +L
Sbjct: 386 EDGSYYQSLHVIITPTTMSLQGPYPEQSNRVLRRYDSKNHESFLRVTFRDDNYLQLRF-- 443
Query: 105 LSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM---FASRP 161
+ + + I +RV L+ G+ I + F LA+S S +K++S+W F + P
Sbjct: 444 ------DRDVDGPSFIRDRVGRFLKQGLSIAGRTFTFLAYSQSALKEHSVWFVKKFHNAP 497
Query: 162 --ELTAADIRESMGDFRDIKN-------VAKYAARLGQSFGSSREALHVDSSDIEIIPDV 212
++ A I +S+G F ++ A+YAAR+ Q+F ++ A+ V ++ + D+
Sbjct: 498 YGDVDAKTIIDSLGTFDNLSYDPTLKLCPARYAARISQAFTATDAAV-VSVEEVLNLDDI 556
Query: 213 EVEDDGITYCFSDGIGKISAELAEIV-------AKNCGFTIYTPSAFQIRYGGYKGVVAV 265
+ D Y F+DG+G +S +LA + + G + P A+Q+R+ G KG++++
Sbjct: 557 KTSDG--KYVFTDGVGTMSQDLARAIWGKLRSAKRKSGRSSDYPHAYQVRFLGSKGMLSI 614
Query: 266 DPT--SSTKLSLRKSMLKYKSESTSLDI---LANSKYQPC--FLNRQLITLLSTLGIRDH 318
D T + ++LR SM K+++ES S + +A + +P +LNR LITLL LGI +
Sbjct: 615 DHTLNGAHTIALRPSMTKFEAESGSGEQEIEIARAFDRPTAYYLNRPLITLLEGLGIPTN 674
Query: 319 VFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKEL-----LMCGYKPDVEPFL 373
VF K Q + V + + KA LE G + + + L G D +PF
Sbjct: 675 VFLKFQNDAVQETRSATLTLSKAARLLETHGLGASFRLPATMTSLAKLGLGSIHD-DPFY 733
Query: 374 LMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNS 433
+LQ L +L+ RI + + ++G D LE G+VF C + R +
Sbjct: 734 GKLLQIAVHHVLRDLKHHARIPVPDAWTLVGVADVHSYLEEGEVFA-CVKHQTRGII--- 789
Query: 434 CNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVP------SLHHMVDCVVFPAKGKR 487
+EG ++++++P +HPGD+++++A+ VP + + + VVF KG+R
Sbjct: 790 ---------FLEGLLLISRSPTIHPGDVQIVKAIGVPPEGSCFAREPLHNTVVFSVKGRR 840
Query: 488 PHTNECSGSDLDGDVYFVC--WDHELIPPLQ--FPPMDYTPAPEKVLARDMTIEDVEEYF 543
P + G DLDGD+Y V +H P + + P +Y P K+L + T++DV ++
Sbjct: 841 PLPSCLGGGDLDGDIYNVLPLKEHPDFMPRRATYKPAEYAPTQRKLLDQPSTMDDVADFV 900
Query: 544 ADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAA---TIPSG 600
+YI++D +G+I ++ AD P CL LA+L + AVD+ K+G A +IP
Sbjct: 901 MEYIISDVVGIIAINWLIIADQSPAGIEDEDCLRLAQLHSDAVDYPKSGRAVNPESIPK- 959
Query: 601 LRVEIYPDF-----MEKQDKTCYESQRVIGKLYRAVKDIAPPT 638
L+ + PD+ + Y+S++ +G L+R VK PT
Sbjct: 960 LKFPMKPDWNAPETINPDSANYYQSRKAVGVLFREVKLDEIPT 1002
>gi|389751599|gb|EIM92672.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1228
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 186/627 (29%), Positives = 311/627 (49%), Gaps = 70/627 (11%)
Query: 47 DDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYST--V 104
D G+ + VTP+ + GP SNRV+R YP + D FLR+SF+DE+ + S +
Sbjct: 415 DPGVFESFHIAVTPTIMALEGPLPERSNRVMRMYPKDHDCFLRVSFMDENRLQYRSNRDI 474
Query: 105 LSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMF---ASRP 161
PL I + L G+V+ +KF L +S S +K +++W RP
Sbjct: 475 DGPLF----------INSWITRILHEGMVVAGRKFRFLGYSQSALKSHTVWFVLDDPERP 524
Query: 162 ELTAADIRESMGDFRDIKN-------VAKYAARLGQSFGSSREALHVDSSDIEIIPDVEV 214
EL +I +G F ++K A+Y AR+ Q+F ++ ++ V + ++ ++ D++
Sbjct: 525 ELRVENIIRGLGQFDNLKYDRQLIYCPARYGARISQAFTATDPSIVVRAEEVFLLEDIKR 584
Query: 215 EDDGITYCFSDGIGKISAELAEIVAKNC------GFTIYT--PSAFQIRYGGYKGVVAVD 266
+CF++G+G +S +A+ ++K F T P AFQ+R+ G KGVV VD
Sbjct: 585 GQ----WCFTEGVGTLSRAMAKAISKTLKDSGKRAFRRLTTHPGAFQVRFQGSKGVVTVD 640
Query: 267 P-TSSTKLSLRKSMLKYKSESTSLDI-LANSKYQPC--FLNRQLITLLSTLGIRDHVFEK 322
P + +R SM+K+++ SLD+ +A + +P +LNR LI +L LG+ VF++
Sbjct: 641 PRLRGNAICVRPSMIKFEAPE-SLDVEIAQAFDRPSKYYLNRPLIMILEALGVPYRVFDR 699
Query: 323 KQREGVAQLDAI---LTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQT 379
Q + Q+ L + EA L +S ++ L + + +
Sbjct: 700 LQTRAITQVHKASRSLRGLAEIMEAYGLGTSYRLPSIFLSLSKLHVEAPPDDSFFHRVND 759
Query: 380 FRASNLL-ELRTRTRIFI-QNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNR 437
F ++L +L+ RI + ++G ++G D G L +V+
Sbjct: 760 FTVHHILRDLKHHARIPLDRHGWTLVGVADIHGWLREKEVYAYIRLP------------- 806
Query: 438 SGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS-----LHHMVDCVVFPAKGKRPHTNE 492
GE +EG+V+V+++P +HPGD++VL AV P + + +VF +G RP
Sbjct: 807 DGEAFYLEGRVMVSRSPTIHPGDVQVLTAVKPPHGSIYLREPLANTLVFSIQGTRPVYTG 866
Query: 493 CSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSL 552
G DLDGD+Y V EL+PP + P +Y PA +++L R TI D+ ++ ADYI +D +
Sbjct: 867 LGGGDLDGDLYNVTTLRELMPPKNYHPANYDPAVKRILDRRSTIHDIADFVADYINSDII 926
Query: 553 GVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTG--VAATIPSGLRVEIYPDFM 610
G++ ++ AD P CL L +L + AVD+ K+G V+A L+ PD+
Sbjct: 927 GLVAINWLIIADQSPQGIFDPDCLSLCELHSNAVDYPKSGNPVSAKAIPFLKFSAKPDWN 986
Query: 611 E------KQDKTCYESQRVIGKLYRAV 631
K Y+S++ IG+L+RAV
Sbjct: 987 APETVDLKDTANYYQSEKAIGRLFRAV 1013
>gi|426201566|gb|EKV51489.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1198
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 190/643 (29%), Positives = 327/643 (50%), Gaps = 77/643 (11%)
Query: 47 DDGLIYVN-KVLVTPSKVYFSGPEISLSNRVVRSYPDE-IDNFLRLSFVDEDLDKLYSTV 104
+DG Y + V++TP+ + GP SNRV+R Y + ++FLR++F D++ +L
Sbjct: 386 EDGSYYQSLHVIITPTTMSLQGPYPEQSNRVLRRYDSKNHESFLRVTFRDDNYLQLRF-- 443
Query: 105 LSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM---FASRP 161
+ + + I +RV L+ G+ I + F LA+S S +K++S+W F + P
Sbjct: 444 ------DRDVDGPSFIRDRVGRFLKQGLSIAGRTFTFLAYSQSALKEHSVWFVKKFHNAP 497
Query: 162 --ELTAADIRESMGDFRDIKN-------VAKYAARLGQSFGSSREALHVDSSDIEIIPDV 212
++ A I +S+G F ++ A+YAAR+ Q+F ++ A+ V ++ + D+
Sbjct: 498 YGDVDAKTIIDSLGTFDNLSYDPTLKLCPARYAARISQAFTATDAAV-VSVEEVLNLDDI 556
Query: 213 EVEDDGITYCFSDGIGKISAELAEIV-------AKNCGFTIYTPSAFQIRYGGYKGVVAV 265
+ D Y F+DG+G +S +LA + + G + P A+Q+R+ G KG++++
Sbjct: 557 KTSDG--KYVFTDGVGTMSQDLARAIWGKLRSAKRKSGRSSDYPHAYQVRFLGSKGMLSI 614
Query: 266 DPT--SSTKLSLRKSMLKYKSESTSLDI---LANSKYQPC--FLNRQLITLLSTLGIRDH 318
D T + ++LR SM K+++ES S + +A + +P +LNR LITLL LGI +
Sbjct: 615 DHTLNGAHTIALRPSMTKFEAESGSGEQEIEIARAFDRPTAYYLNRPLITLLEGLGIPTN 674
Query: 319 VFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKEL-----LMCGYKPDVEPFL 373
VF K Q + V + + KA LE G + + + L G D +PF
Sbjct: 675 VFLKFQNDAVQETRSATLTLSKAARLLETHGLGASFRLPATMTSLAKLGLGSIHD-DPFY 733
Query: 374 LMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNS 433
+LQ L +L+ RI I + ++G D LE G+VF C + R +
Sbjct: 734 GKLLQIAVHHVLRDLKHHARIPIPDAWTLVGVADVHSYLEEGEVFA-CVKHQTRGII--- 789
Query: 434 CNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVP------SLHHMVDCVVFPAKGKR 487
+EG ++++++P +HPGD+++++A+ VP + + + VVF KG+R
Sbjct: 790 ---------FLEGLLLISRSPTIHPGDVQIVKAIGVPPEGSCFAREPLHNTVVFSVKGRR 840
Query: 488 PHTNECSGSDLDGDVYFVC--WDHELIPPLQ--FPPMDYTPAPEKVLARDMTIEDVEEYF 543
P + G DLDGD+Y V +H P + + P +Y P K+L + T++DV ++
Sbjct: 841 PLPSCLGGGDLDGDIYNVLPLKEHPDFMPKRATYEPAEYAPTQRKLLDQPSTMDDVADFV 900
Query: 544 ADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAAT---IPSG 600
+YI++D +G+I ++ AD P CL LA+L + AVD+ K+G A IP
Sbjct: 901 MEYIISDVVGIIAINWLIIADQSPAGIEDEDCLRLAQLHSDAVDYPKSGRAVNPELIPK- 959
Query: 601 LRVEIYPDF-----MEKQDKTCYESQRVIGKLYRAVKDIAPPT 638
L+ + PD+ + Y+S++ +G L+R VK PT
Sbjct: 960 LKFPMKPDWNAPETINPDSANYYQSRKAVGVLFREVKLDEIPT 1002
>gi|358384596|gb|EHK22193.1| hypothetical protein TRIVIDRAFT_149633 [Trichoderma virens Gv29-8]
Length = 1731
Score = 235 bits (599), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 166/473 (35%), Positives = 238/473 (50%), Gaps = 39/473 (8%)
Query: 128 LRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAAR 187
LR GI I + SNSQ+K + ++ A+ E A + E++GDF +K VAK A R
Sbjct: 124 LRAGITIQGVHYNFYGHSNSQLKSRTCYLCAASKEQIAQKV-EALGDFTKMKTVAKKAKR 182
Query: 188 LGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTI- 246
+G F +R A+ VD +E IPD+EV D + F+DG G I+ LA +++
Sbjct: 183 IGLLFSVARAAMQVDPKKVEDIPDIEVGD----FIFTDGCGLIAPGLASQLSRRIKIAFR 238
Query: 247 ---YTPSAFQIRYGGYKGVVAVDPTSSTK---LSLRKSMLKYKSESTSLDILANSKYQPC 300
YTPS FQIRY GYKGVV +DPT + L +RKSM K+ D L+ S Y
Sbjct: 239 NMRYTPSVFQIRYRGYKGVVTLDPTMAKGGPWLKMRKSMKKFSGG----DDLSFSPYVFG 294
Query: 301 FLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKEL 360
LN ++I LL LGI +KQ+E L DP A L ++ E + E
Sbjct: 295 NLNDEVIVLLDALGISRQTLLRKQQEHFDFLAKAYKDPRVAFRILCHLNMPE----VAER 350
Query: 361 LMCGYKPDVEPFLLMMLQTFRASNLLELR--TRTRIFIQNGRAMMGCLDETGTLESGQVF 418
++ V P + ++ +L R + RI I R + G D G L+ GQ
Sbjct: 351 VIIDSLDAVRPKINKLINA-EYDKMLNKRDEQKCRILIPKSRLLFGVCDAWGVLKPGQCA 409
Query: 419 VQCSASRRREFLDNSCNNRSGELGVVEG-KVVVAKNPCLHPGDMRVLRAVDVPSLHHMVD 477
V+ + + G+ ++G KV+V +NPCLHPGD++ L V+ P L H+VD
Sbjct: 410 VKVTM------------DGDGQPYALKGMKVLVTRNPCLHPGDLQKLDVVERPELAHLVD 457
Query: 478 CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIE 537
C+VFP G+RP + SG DLDGD +FV WD ++IP Y E + +T +
Sbjct: 458 CIVFPTTGRRPTADMMSGGDLDGDTFFVTWDPDIIPSTISQAAHYPGVREPLRFSPITDD 517
Query: 538 DVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSK 590
D YFA Y N SLG + N ++ A A S++C EL +L + VD ++
Sbjct: 518 DRLLYFAKY-TNASLGRVKNLYLKWA--RASNAMSSECQELNRLFSQCVDGNR 567
>gi|393244711|gb|EJD52223.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1372
Score = 235 bits (599), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 216/742 (29%), Positives = 360/742 (48%), Gaps = 107/742 (14%)
Query: 46 LDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDED-----LDKL 100
LD + + V VTPS V GP LSNRV+R YPD D F+R+ F DE+ D+
Sbjct: 567 LDRSVFLCHHVGVTPSGVRLEGPFPVLSNRVLRKYPDHQDCFIRVHFTDEEQYQFRWDRE 626
Query: 101 YSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA-- 158
V + RV L+ G+ + + FE LA+S +K++++W
Sbjct: 627 VDGV-------------AFVRGRVGGVLKQGLELAGRYFEFLAYSFGALKEHTVWFVTPF 673
Query: 159 ---SRPELTAADIRESMGDF-RDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEV 214
+ +TA IR+S+GDF + I + + Y ARL Q+F ++ ++ V++S++E IPD +
Sbjct: 674 IDQAGKSVTAESIRDSLGDFSKVIYHPSLYGARLSQAFSATYPSVRVEASEVEQIPD--I 731
Query: 215 EDDGITYCFSDGIGKISAELAEIVAKNC--GFTIY----TPSAFQIRYGGYKGVVAVDPT 268
D SDG S +LA+ + G + Y P A+QIR GG KG++ VDPT
Sbjct: 732 YDPSGENVMSDGCAPCSTQLAKDIDDVLMEGKSRYEYNPVPKAYQIRIGGSKGMIYVDPT 791
Query: 269 -SSTKLSLRKSMLKYKSESTSLDILANS--KYQPCFLNRQLITLLSTLGIRDHVFEKKQR 325
KL LR SM K+ + SLDI ++ + +LNR L+ LL LG+R F++ Q
Sbjct: 792 LPGRKLLLRPSMNKFDAPD-SLDIEVSNIPRASHMYLNRPLVMLLEDLGVRLSTFKQLQE 850
Query: 326 EGV-AQLDAI--LTDPLKAHEALELMSSGENTNVLKEL--LMCGYKPDVEPFLLMMLQTF 380
+ + A LDA + + + L + VL EL + G + D + +L +
Sbjct: 851 DTMAADLDAARHIGRFIIGMNQIGLGKRFYLSYVLGELADMEFGLRDDCQGDFGSLLDDY 910
Query: 381 RASNLL---------ELRTRTRIFIQNGRAMMGCLDETGTLESGQV--FVQCSASRRREF 429
++ +++ + RI + + ++G LDE L++GQ+ +VQ F
Sbjct: 911 WYHGIVKSTLWDQFRKIKYQARIRVPDSWTLVGVLDEHQILQTGQIMAYVQNEDYPNGYF 970
Query: 430 LDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVP-----SLHHMVDCVVFPAK 484
L +G V++ ++P +HPGD++++ AV P + + +CV+F A
Sbjct: 971 L--------------KGPVLICRSPVVHPGDVQMVEAVVPPDGSILDVERLPNCVIFSAL 1016
Query: 485 GKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ-FPPMDY-TPAPEKVLARDMTIEDVEEY 542
G R C G F ++ Q + P Y TP K+ R+ TI+DV ++
Sbjct: 1017 GAR-SIPSCLGGGDLDGDLFHVSEYPYFRIKQPYLPAAYPTPERRKLKDREATIDDVADF 1075
Query: 543 FADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLR 602
+YI +D LG++ H+V AD PD R+++C++LA+L + AVD++KTG+ +P +R
Sbjct: 1076 VVEYINSDVLGLVATTHLVIADQHPDGVRAHKCMQLAELHSTAVDYAKTGIP--VPR-MR 1132
Query: 603 VEIY-----PDFM--EKQDKTC---YESQRVIGKLYRAV---------KDIAPPTATIKS 643
+ Y PD+ E D T YESQR +G LYR V K++ T T +
Sbjct: 1133 IPHYEFPAKPDWKADEVDDPTSADYYESQRALGHLYRGVGYTSADDLEKNLGKHTRTAED 1192
Query: 644 FTKEVAMQSYD-----TDMEVDG--FEDYITDAFK---YKTEYDNRLGNLMDYYGIKTEA 693
++++ + + D+E D F + + ++ Y+ + L +L Y + TE
Sbjct: 1193 VDRDISSKIQERIEEHVDLETDPPVFHEELMKLYQQYVYELRRISTLHSLKAIYPL-TEI 1251
Query: 694 EILSGCIMEMAKSFDKKRDLEA 715
E++ G I+ ++++L A
Sbjct: 1252 EVMLGVILGKTSQPKRRKELAA 1273
>gi|407926953|gb|EKG19860.1| PhoH-like protein [Macrophomina phaseolina MS6]
Length = 1608
Score = 235 bits (599), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 161/475 (33%), Positives = 241/475 (50%), Gaps = 31/475 (6%)
Query: 128 LRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAAR 187
L++GI + SNSQ+K S +FA I ES+GDF + V K A R
Sbjct: 17 LKSGIRFNGVHYNFYGHSNSQLKTRSCVLFADTRAAIHRKI-ESLGDFSKMTTVGKKAKR 75
Query: 188 LGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTI- 246
+G F S+ + + IPDVE D Y F+DG G IS LA + ++
Sbjct: 76 IGLLFSSAEMGVELAPERCADIPDVEAND----YIFTDGCGLISPHLARSLVQSVHIAFR 131
Query: 247 ---YTPSAFQIRYGGYKGVVAVDPTSSTKL--SLRKSMLKYKS-ESTSLDILANSK-YQP 299
Y PS FQIRY GYKGV+++DP+ ++ R SM K++ + +L ++ SK Y
Sbjct: 132 NVKYIPSVFQIRYRGYKGVLSLDPSMGSQCLAKFRSSMKKFRGGDDLTLSVVDYSKPYTF 191
Query: 300 CFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKE 359
+LN +++ LL L + D VF +KQ E + L+++ L +S ++ +
Sbjct: 192 GYLNDEVVLLLHALRVPDEVFLRKQAEHLHFLESVTR--LDVRMCFRFLSYCNRLDLAER 249
Query: 360 LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFV 419
LL+ G + M+ Q + R RI I R + G D G L+ G+ V
Sbjct: 250 LLISGVEAVERDVRKMVGQEYERMLTKRNEQRCRILIPQSRLLFGVCDTKGLLKEGECVV 309
Query: 420 QCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
+ + +D ++ +V +V+V +NPCLHPGD++ RAV P L H+VDCV
Sbjct: 310 RVT-------MDGDGQAQT----IVGTQVLVTRNPCLHPGDLQKFRAVFHPELSHLVDCV 358
Query: 480 VFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLA-RDMTIED 538
VFP GKRP + SG DLDGD +FVCWD +LIP + P +Y P P+ +A + +T +D
Sbjct: 359 VFPTAGKRPSADLMSGGDLDGDKFFVCWDKDLIPTVASQPAEY-PGPKAQIALKPITEDD 417
Query: 539 VEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGV 593
+YFA Y N SLG + N + A L S QC +L +L ++ VD ++ +
Sbjct: 418 RIDYFAQY-SNMSLGRVKNLFLAWARLH--GPLSPQCQQLNRLFSLCVDGNRIKI 469
>gi|452978294|gb|EME78058.1| hypothetical protein MYCFIDRAFT_145022 [Pseudocercospora fijiensis
CIRAD86]
Length = 1703
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 182/538 (33%), Positives = 267/538 (49%), Gaps = 45/538 (8%)
Query: 74 NRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIV 133
NRV++ D + FL LS D L +T + E E V L+ G+V
Sbjct: 65 NRVIKD--DPLHQFLLLSVADFRLQITANTKDGETQPAPARES----AEYVARLLKTGVV 118
Query: 134 IGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFG 193
+ + SNSQ+K S ++FA+ E+ + E++ DF ++++V K A RLG F
Sbjct: 119 LNGLAYHFFGHSNSQLKSRSCFLFAASKEVIKEKV-EALADFSNMQSVGKKAKRLGLLFS 177
Query: 194 SSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTI----YTP 249
S+ AL + I DV++ D Y F+DG G I+ LA+ VA+ Y P
Sbjct: 178 SAEHALELQPERCTDIDDVKLGD----YVFTDGCGLIAVRLAKQVAQRKRIVYRNKRYLP 233
Query: 250 SAFQIRYGGYKGVVAVDPT--SSTKLSLRKSMLKYKS-ESTSLDILANSK-YQPCFLNRQ 305
S QIRY GYKGV+ +DPT T++ RKSM K K + S ++ +SK Y FLN +
Sbjct: 234 SVLQIRYRGYKGVLMIDPTLTGQTQVLFRKSMKKLKDVKDLSFSVVEHSKPYTFGFLNDE 293
Query: 306 LITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGY 365
++ LL+ LG+ KQ E + LD +A A +S ++ ++LL+ G
Sbjct: 294 IVVLLNALGVSTDTILSKQTEYLQFLDEAYNGEPRA--AFRFLSYQNELDLAEKLLIEGV 351
Query: 366 KPDVEPFLLMMLQT--FRASNLLELRTRTRIFIQNGRAMMGCLDETGT------LESGQV 417
V L +++T R N E R RI + R + G D TG L G
Sbjct: 352 H-SVRKSLRSLVKTEYSRMLNKYE-EQRCRIMLTQSRLLFGVCDPTGRDGGMSRLPPGTC 409
Query: 418 FVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVD 477
FV+ + LD R+ ++ +V+V +NPCLHPGD++ RAVDVP H+VD
Sbjct: 410 FVRIT-------LDGDGEPRT----LINTEVLVTRNPCLHPGDLQKFRAVDVPEFSHLVD 458
Query: 478 CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIE 537
C+VFP +G RP + SG DLDGD +FV WD ++IP Y E+ ++T +
Sbjct: 459 CIVFPIRGSRPSADLMSGGDLDGDKFFVTWDPDIIPKKIAEAAMYPGVKERHHFGEITGD 518
Query: 538 DVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAA 595
D EYFA Y + SLG I N ++ A L+ A S +C +L +L + VD + V A
Sbjct: 519 DRAEYFARY-RSTSLGKIKNLYLKWARLK--GAMSPECQQLNRLFSQCVDGNHVKVPA 573
>gi|409045817|gb|EKM55297.1| hypothetical protein PHACADRAFT_173398 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1215
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 187/652 (28%), Positives = 317/652 (48%), Gaps = 83/652 (12%)
Query: 43 AVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYS 102
AV L G + V +TP+++ GP + SNRV+R Y D+F+R+ F DED +
Sbjct: 400 AVELSSGNFMCHHVTITPTRMLLEGPYVIQSNRVIRQYRGYEDHFIRIDFRDEDRLQYRW 459
Query: 103 TVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMF----- 157
+ + + + RV L+ G + +KFE LA+S+S ++++++W
Sbjct: 460 --------DRDTDGKSLLENRVGGLLKGGFSLATRKFEFLAYSSSALREHAVWFVNPFYH 511
Query: 158 ASRPELTAADIRESMGDFRDIKNV-AKYAARLGQSFGSSREALHVDSSDIEIIPDVEVED 216
+ + A IR S+GDF + N +KYAAR+ Q+F ++ ++ + E + D+ E
Sbjct: 512 QEKGWIDAEYIRSSLGDFSAVINCPSKYAARIAQAFTATDPSVEITRDQWEQMDDLGEE- 570
Query: 217 DGITYCFSDGIGKISAELAEIV------AKNCGFTI-YTPSAFQIRYGGYKGVVAVDPT- 268
Y F+DG+G IS+EL +++ A++ + PSA+QIR+ GYKG+VAVD
Sbjct: 571 ---PYLFTDGVGTISSELGDMIWEALCSARDDSYRKNIKPSAYQIRFLGYKGMVAVDGRL 627
Query: 269 SSTKLSLRKSMLKYK--SESTSLDILANSKYQP--CFLNRQLITLLSTLGIRDHVFEKKQ 324
K+ LR SM K++ +E T+ +A + +P C+LNR LI +L G+ F + Q
Sbjct: 628 KGVKMRLRPSMNKFEGPAEETATIEIARAFERPNTCYLNRPLIMVLEDRGVIKQAFLELQ 687
Query: 325 REGVAQLDAILTDPLKAHEALELMSSGEN---TNVLKELLMCGYKPDVE---------PF 372
VA + ++ + S G + + V + L G + E PF
Sbjct: 688 EAAVAAIHMSSDSVMQCRQLFREHSLGGSYRLSYVWQLLNAVGLGMEHEENIRVVLQDPF 747
Query: 373 LLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGT-----------LESGQVFVQC 421
++Q + L ++ RI + ++G DE LE GQ++
Sbjct: 748 FERLVQFAKNDVLRSIKHNARIPVLGSYLLVGVADEGPAYEAEGCENVFKLEEGQIY--- 804
Query: 422 SASRRREFLDNSCNNRS--GELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS-------L 472
+C +S EL +EG V ++++P +HPGD++ + A+ P
Sbjct: 805 -----------ACVQKSVDEELIWIEGSVTISRSPVVHPGDVQRVTAIGKPPDDGRPCFF 853
Query: 473 HHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLAR 532
++ + VV P+ G R + G DLDGD+Y + W+ L+P P Y P ++ L R
Sbjct: 854 RNLKNVVVLPSTGGRSLASMLGGGDLDGDLYSIIWESTLLPTEHQGPAKYEPVGKRELDR 913
Query: 533 DMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTG 592
IED+ ++ +YI +D LG++ + H++ A + R +C+ LA+L + AVD+ K G
Sbjct: 914 PSRIEDICDFIIEYIDSDVLGLLSDRHLIIAGELREGTRDAKCIRLAELCSQAVDYPKNG 973
Query: 593 VAATIPSGLR--VEIYPDFMEKQDKT-----CYESQRVIGKLYRAVKDIAPP 637
V I + R + PD+ + +D YES R +G L+R V+ + PP
Sbjct: 974 VPVDIQNSPRWLIPYKPDWKKAEDNAPRKTDYYESDRALGDLFRNVQLLEPP 1025
>gi|46133873|ref|XP_389252.1| hypothetical protein FG09076.1 [Gibberella zeae PH-1]
Length = 1721
Score = 233 bits (595), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 166/488 (34%), Positives = 237/488 (48%), Gaps = 51/488 (10%)
Query: 128 LRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAAR 187
LR GI I + SNSQ+K S ++ A+ E + I ES+GDF +K V K A R
Sbjct: 123 LRAGISINGVHYNFYGHSNSQLKSRSCFLLAATKEGISRQI-ESLGDFTKMKTVGKKAKR 181
Query: 188 LGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGF--- 244
+G F S++ A+ ++ E IPDVE D Y F+DG G I+ LA+ +++
Sbjct: 182 IGLLFSSAKTAMTINPDRCEDIPDVETAD----YIFTDGCGLIAPSLAQELSRRTRIIFR 237
Query: 245 -TIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQP---C 300
T YTPS FQIRY GYKGVV VD T++ +K++LK++ + + P
Sbjct: 238 DTRYTPSVFQIRYRGYKGVVTVD----TRMKKQKALLKFRKSMKKFSGGDDHSFAPFSYG 293
Query: 301 FLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKEL 360
FLN + I LL LGI KQR L TD +A L+S ++ + +
Sbjct: 294 FLNDETIILLHALGISQETLLAKQRRHFDLLRNAKTD---HRDAFRLLSYSNRPDLAERV 350
Query: 361 LMCG---YKPDVEPFLLMMLQTFRASNLLELR--TRTRIFIQNGRAMMGCLDETGTLESG 415
L+ G KP + + L+ +L + R RIF+Q R + G D L G
Sbjct: 351 LLDGSDSIKPQINSIVNAELK-----KMLNKKDGQRCRIFVQKSRLLFGVCDAWDVLREG 405
Query: 416 QVFVQCSASRRREFLDNSCNNRSGELGVVEG----KVVVAKNPCLHPGDMRVLRAVDVPS 471
+V V+ + E GV +V V +NPCLHPGD + + V+ P
Sbjct: 406 EVAVKVTME---------------ETGVPHALKNTEVTVIRNPCLHPGDWQKFKVVERPE 450
Query: 472 LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLA 531
L H+ DC+VF +GKRP + SG DLDGD +FVCWD +LIP P Y + +
Sbjct: 451 LAHLTDCIVFSTRGKRPAADMMSGGDLDGDTFFVCWDPDLIPSTISTPALYPGGRDPITF 510
Query: 532 RDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKT 591
R +T +D YFA Y N SLG + N ++ A S QC EL +L + VD ++
Sbjct: 511 RPITDDDRLVYFAKY-NNASLGKVKNLYLDWA--RATGPMSAQCQELNRLFSQCVDGNRI 567
Query: 592 GVAATIPS 599
+ + S
Sbjct: 568 RIPEKLQS 575
>gi|443895352|dbj|GAC72698.1| RNA-directed RNA polymerase QDE-1 [Pseudozyma antarctica T-34]
Length = 1496
Score = 233 bits (595), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 215/695 (30%), Positives = 336/695 (48%), Gaps = 72/695 (10%)
Query: 35 SRRFLT--SPAVALDDGLIYVNKVL---VTPSKVYFSGPEISLSNRVVRSYPDEIDNFLR 89
SR FL+ P + DD Y++K VTP++V SGP +SNRV+R+Y D +F R
Sbjct: 365 SRGFLSVLDPTPSPDDD--YLSKTFSIDVTPTRVLLSGPHTHVSNRVIRAYSDHWHHFAR 422
Query: 90 LSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQV 149
++F +ED + +T + ER+ I RVL L+ GI + + +E LA+S+S +
Sbjct: 423 VTFSNED--RGGATTIKANYGFVESERY--IQSRVLKILQRGINVAGRHWEMLAWSSSSM 478
Query: 150 KDNSMWMFAS-----RPELTAADIRESMGDFRDI-KNVAKYAARLGQSFGSSREALHVDS 203
+++W + A IR +GDF D+ + A Y ARL Q+F ++ + VDS
Sbjct: 479 SAHTVWFVTPFRDKDGTHVHAEVIRRELGDFTDVARYPAMYGARLSQAFSATARTVEVDS 538
Query: 204 SDIEIIPDVEVEDDGITYCFSDGIGKISAEL-AEI----VAKNCG-------FTIYTPSA 251
S I +PD+E D + Y +DG+G+IS EL AE+ V G F PSA
Sbjct: 539 SLILHMPDIETPDRKMAY--TDGVGQISPELMAEVWEKYVTSALGEPRKRKFFKAAAPSA 596
Query: 252 FQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSESTSLDILANSKYQPCF---LNRQLI 307
QIR GG+KG + V+P K L+LR SM K+ S L++ ANS + C LNR LI
Sbjct: 597 IQIRIGGHKGCLTVNPRLQGKQLALRPSMSKFVSPHQDLEV-ANSSAR-CLSAKLNRPLI 654
Query: 308 TLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNV------LKELL 361
L G+ Q+E +A + T + + S G ++ L +
Sbjct: 655 NALDDRGVPATALLDIQKEAIAHIGRARTHFDETAKLCSAYSFGTGCDLHILFQKLHKHG 714
Query: 362 MCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQC 421
M + F L++ + A+ L +++ + RI ++ G ++G DE L+ G+VF Q
Sbjct: 715 MGATSIHSDSFFLVLAKAVIAAALGDMKRKARIPVR-GVTLIGVADEFAFLKEGEVFAQV 773
Query: 422 SASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMV---DC 478
E +D R V+ G ++ ++P + PGD+ +++ V P H ++ +
Sbjct: 774 ------EHVDLGQVRRR----VLVGTKLIGRSPTVDPGDIAMVKCVRPPPGHPLLQLRNV 823
Query: 479 VVFPAKGKR-PHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKV-LARDMTI 536
VVF ++ P G DLDGD+Y + D L P P + + L R
Sbjct: 824 VVFNTCTRQEPLPRRLGGGDLDGDLYTIYEDERLFLPTPQPGTTFHAKTRPMELDRYCNS 883
Query: 537 EDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAAT 596
D+ +FAD+++ND +G++ + H+ AD + +C +LA L ++A DF KTGVA
Sbjct: 884 TDLANFFADFMLNDFIGLVSHMHLRIADASKAGSLDGRCKQLAMLHSLATDFRKTGVAVK 943
Query: 597 IPSGLRVE--IYPDFME----KQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAM 650
R++ I PDF+ +Q Y S RV+G LYRAV T ++ T
Sbjct: 944 RTQLPRMDEPIIPDFLAQGEPRQGGLTYPSTRVLGYLYRAVSWNQTDTPSLDKNTDP--- 1000
Query: 651 QSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMD 685
+T +E D EDY D +E D+ G+ D
Sbjct: 1001 ---ETGLEPDYTEDY-GDEDDLTSEIDSEFGSDFD 1031
>gi|341877528|gb|EGT33463.1| hypothetical protein CAEBREN_18731 [Caenorhabditis brenneri]
Length = 1708
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 236/880 (26%), Positives = 388/880 (44%), Gaps = 175/880 (19%)
Query: 48 DGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSP 107
+G K L+T ++ + PE+ +SNR V + +R + D++ K+ L
Sbjct: 443 EGFRKTRKALLTTTRKIYLAPEMIMSNRAVTGVDHDGTRIIRTTIRDDNFQKMRQYQLGD 502
Query: 108 LISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMF---------- 157
L+S E+V+ L+ G VI + F LA SNSQ+++ +
Sbjct: 503 LLS-----------EKVMRRLKKGFVIMGRSFSYLASSNSQMREGGTYHMERFNKKQLDL 551
Query: 158 ------------ASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSRE--ALHVDS 203
+P++ A R+ +G F +++K ARLGQ F +R + + +
Sbjct: 552 DYPGIHLRKIPSGYKPKILA--YRKKLGKFEKTGSISKAMARLGQCFTQARACIGIEIGN 609
Query: 204 SDIEIIPDV--EVEDDGITYCFSDGIGKISAELAEIVAKNCGF-TIYTPSAFQIRYGGYK 260
D +++PD +G Y ++DG+G ISA LA+ +AK+ + PSA+QIR+ G K
Sbjct: 610 QDYQMVPDAIGGKNANGAPYMYTDGVGMISARLAQKIAKSMKLPNGFVPSAYQIRFRGLK 669
Query: 261 GVVAVDP---------------------TSSTKLSL---------RKSMLKYKS-----E 285
G++ VDP T+S ++ L R+S +K+ S +
Sbjct: 670 GMLVVDPSLDNKADYFKDIYRRGLMRKETNSEEIDLAPYTFKCLFRESQMKFHSSKGGKD 729
Query: 286 STSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREG-VAQLDAILTDPL----- 339
++++ S P LNR I +L + + K+ G + +L I D
Sbjct: 730 KWPIELVKWSSPTPVTLNRPFINILDQVSALQSLDCHKRICGRIEELLDIEMDSFTDCII 789
Query: 340 ---KAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFI 396
K LE M + L G+ EPF +++ +++ L + I I
Sbjct: 790 NEDKCRSKLEGMPRRVHFPSL--WRRNGFSLCTEPFFRALIKAAIDFSMMRLLKKVNIPI 847
Query: 397 QN--GRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNR--SGELG-VVEGKVVVA 451
+ GR+M G DETG L+ GQVFVQ + + NN+ SG G +++G ++V
Sbjct: 848 PSNVGRSMFGVTDETGLLQYGQVFVQYTEN---------VNNKHPSGVSGKILKGPLMVT 898
Query: 452 KNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHEL 511
K P + GD+R+ AVD+P L H+ + +VFP G R +E +GSDLDGD Y V WD L
Sbjct: 899 KFPSMCEGDVRMYEAVDIPELRHLENVIVFPQNGPRSMPDEMAGSDLDGDEYAVIWDPFL 958
Query: 512 IPPLQFPPMDY-TPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKA 570
Y PEK L D E + ++A+++ + +G+ H+ +D
Sbjct: 959 FFERNETAFAYCNDKPEKKLNIDEMDEGMNVFYAEFMNQEDVGITATNHLHQSDQY--GI 1016
Query: 571 RSNQCLELAKLSTIAVDFSKTGVAATIPSGL-----------------RVEIYPDFMEKQ 613
S C LA+ + + +D+SK+GVA PS L + E PDF +
Sbjct: 1017 NSKVCNILAEKNAMLLDYSKSGVA---PSPLTFNWDKHPETKKWVPPEKSERKPDFANNR 1073
Query: 614 --DKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFK 671
Y+S R++G L+R ++ + AT S K+V + D + G+E Y + A
Sbjct: 1074 FSMNQTYQSSRLLGTLHRELRSVNDVVAT--SAEKQVPL-VLDDLLVWTGWEQYKSVAEA 1130
Query: 672 YKTEYDNRLGNLMDYYGIKTEAEILSGCIMEM-AKSFDKKRD------LEAII-FAVKSL 723
Y+ L ++M+ +G+ TEAE+ SG E+ + DK++D E +I V +L
Sbjct: 1131 QLLRYNGSLRSIMETFGVNTEAEVFSGYYREIRNRQSDKEQDDMSQYCTENVIETQVTAL 1190
Query: 724 KKEARAWFNK------------------KNESDSSHEDV------------YAKASAWYH 753
++ RA F + +NE +DV AKA A+Y
Sbjct: 1191 YRKFRAEFFEEFAEHTPDSPAYMRLTVPENERVWEEKDVLRRVCRKPSNAMMAKAVAYYR 1250
Query: 754 VAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIKRGKQ 793
Y + E+G + LSF W +D ++ RGK+
Sbjct: 1251 TCYQNAV-----EKGDRK---LSFAWLAYD-ILNTVRGKK 1281
>gi|340505285|gb|EGR31631.1| RNA-dependent rna polymerase, putative [Ichthyophthirius
multifiliis]
Length = 592
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 157/472 (33%), Positives = 242/472 (51%), Gaps = 47/472 (9%)
Query: 248 TPSAFQIRYGGYKGVV-AVDPTSSTKLSLRKSMLKY----KSESTSLDILANSKYQPCFL 302
P AF++ G KGV+ + + LR SM K+ + + +DIL +KY+ +L
Sbjct: 123 QPHAFKLDLLGSKGVLMQMKFIEKNTIILRNSMKKFDVLNEGDKLYIDILDMNKYRNGYL 182
Query: 303 NRQLITLLSTLGIRDHVFEKKQREGVAQL------DAILTDPLKAHEALELMSSG-ENTN 355
NRQ+I LL +LGI+D +F Q E + L DA + L+ E +
Sbjct: 183 NRQVIILLKSLGIQDKIFRDLQNEFLQMLEKEGFKDANFYNLFNVDFEENLVEKNIEKLD 242
Query: 356 VLKELLMCGYKPDV----EPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGT 411
+ LL Y + +PF+ +L + + L+ + I+++ ++G LDE
Sbjct: 243 RITVLLKKMYDEQLYRKKDPFIDGVLNSLKYRGYYILKKKCNIYVEKSARLLGILDEFNL 302
Query: 412 LESGQVFVQCSASRRREFLDNSCNNRSGEL-GVVEGKVVVAKNPCLHPGDMRVLRAVDVP 470
LE QV+ S + GEL +EGKV+V KNPCLHPGD+R+L AV
Sbjct: 303 LEENQVYANYS--------------KDGELFQEIEGKVIVVKNPCLHPGDIRILNAVSTK 348
Query: 471 S------LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTP 524
+ L + ++FP KGK P + +GSDLDGD YF+CWD LIP + P DY
Sbjct: 349 NDKKYNFLKEYKNVLIFPKKGKIPIAAQIAGSDLDGDQYFICWDERLIPNKEVIPFDYDQ 408
Query: 525 APEKVLARDMT--IEDVE--EYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAK 580
K + +++ I D + ++F D+I ++LG I N+H+ AD A +C++LAK
Sbjct: 409 ENNKNIQQNLQNQINDQQMLDFFIDFINCENLGKIDNSHLAIADQSSFFALDFRCIQLAK 468
Query: 581 LSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIA--PPT 638
L AVD++KTGV+ +P L+ + +PD+MEK DK YES+ V+G LYR VK ++ P
Sbjct: 469 LHAQAVDYAKTGVSPYVPLNLQSKQFPDYMEKSDKNQYESKSVLGYLYRQVKGLSKHKPF 528
Query: 639 ATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIK 690
K+ + + + D+ F++ D FK + EY + N+ Y IK
Sbjct: 529 FQKKAVFLNLNQKVINEDLLFKFFDENKID-FKKEIEY---VKNIYQIYSIK 576
>gi|358393899|gb|EHK43300.1| hypothetical protein TRIATDRAFT_294361 [Trichoderma atroviride IMI
206040]
Length = 1759
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 194/625 (31%), Positives = 287/625 (45%), Gaps = 78/625 (12%)
Query: 122 ERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNV 181
E + LR GI I + SNSQ+K + + A+ E + I E +GDF +K V
Sbjct: 118 EYAVKFLRTGISIQGVHYNFYGHSNSQLKSRTCYFLAAPKEQISKKI-EGLGDFTKMKTV 176
Query: 182 AKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKN 241
AK A R+G F +R A+ VD +E IPD+EV D Y F+DG G I+ LA+ +++
Sbjct: 177 AKKAKRIGLLFSVARAAMKVDPKKVEDIPDIEVGD----YVFTDGCGLIAPALAKELSRR 232
Query: 242 CGFTI----YTPSAFQIRYGGYKGVVAVDPT---SSTKLSLRKSMLKYKS-ESTSLDILA 293
YTPS FQ+RY GYKGVV +DPT T L +RKSM K+ + S ++
Sbjct: 233 TRIIFRNMRYTPSVFQLRYRGYKGVVTLDPTMAKGGTWLKMRKSMKKFSGGDDLSFSVVE 292
Query: 294 NSK-YQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGE 352
SK Y LN ++I LL LG+ + +KQ+E L DP A L + +
Sbjct: 293 YSKPYVFGHLNDEVIVLLDALGVDRKILLRKQQEHFNFLAEAYQDPRAAFRVLCHLDRPD 352
Query: 353 NTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELR--TRTRIFIQNGRAMMGCLDETG 410
L E ++ V P + ++ +L R + RI I R + G D G
Sbjct: 353 ----LAERVIIDSLDSVRPSINRLINA-EYDKMLNKRDEQKCRILIPKSRLLFGVCDAWG 407
Query: 411 TLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEG-KVVVAKNPCLHPGDMRVLRAVDV 469
L+ GQ V+ + + G ++G KV+V +NPCLHPGD++ L V+
Sbjct: 408 VLKPGQCAVKVTM------------DVDGLPYALKGTKVLVTRNPCLHPGDLQKLDVVER 455
Query: 470 PSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKV 529
P L H+VDC+VFP G+RP + SG DLDGD +FV WD ++IP Y E +
Sbjct: 456 PELAHLVDCIVFPTTGRRPAADMMSGGDLDGDTFFVTWDPDIIPSTISQAAHYPGVREPL 515
Query: 530 LARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFS 589
+T +D YFA Y N SLG + N ++ A A +C EL +L + VD +
Sbjct: 516 RFAPITDDDRLLYFAKY-TNASLGRVKNLYLRWA--RATNAMRPECQELNRLFSQCVDGN 572
Query: 590 KTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVA 649
+ ++ F + + V+ +L+ A K+I +A
Sbjct: 573 R----------IKDSQLDKFAKPPEPDAEAPPFVLDELHDAAKNI-------------IA 609
Query: 650 MQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDK 709
Q + D E Y DA + D+ I +EAE++ MA + +
Sbjct: 610 RQKLEARSRTDSLEGYTLDAIQLLLCRDD--------IAI-SEAELI-----RMAVRWCR 655
Query: 710 KRDLEAI----IFAVKSLKKEARAW 730
K + +F + SLK E +AW
Sbjct: 656 KTNTPFYHLLHMFDLNSLKSEDKAW 680
>gi|409080815|gb|EKM81175.1| hypothetical protein AGABI1DRAFT_56593 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1176
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 191/645 (29%), Positives = 315/645 (48%), Gaps = 90/645 (13%)
Query: 40 TSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEI-DNFLRLSFVDED-- 96
TSP + +D+ L +VTP+ + +GP SNRV+R Y DNFLR+ F +ED
Sbjct: 387 TSPLL-VDEALCQTFHAMVTPTTILLTGPFPERSNRVIRRYGKRNEDNFLRVEFREEDGL 445
Query: 97 ---LDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNS 153
LD+ + ++ R+ L+ IVI + F+ LA+S S ++++S
Sbjct: 446 QYRLDR-------------DVNGRASLRHRISPILKEKIVIAGRSFDFLAYSQSALREHS 492
Query: 154 MWMFASRP-------ELTAADIRESMGDFRD-------IKNVAKYAARLGQSFGSSREAL 199
+W RP E+ AA I + +G F + I A+YAARL Q+F ++ EA
Sbjct: 493 VWF--CRPFVDSDLGEVDAARIIQDLGTFDNLSYDKELINCPARYAARLSQAFTAT-EAA 549
Query: 200 HVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYT---------PS 250
+ +I D++ D Y F+DG G +S + A + + T++ P
Sbjct: 550 TFRVEEPQIRKDIKTNDK--QYIFTDGCGCMSEDFAREIWQ----TMHPKGRDSEEDFPR 603
Query: 251 AFQIRYGGYKGVVAVD--PTSSTKLSLRKSMLKYKS-ESTSLDILANSKY-QPCFLNRQL 306
A+QIRY G KG+++VD S +R SM+K+ + E+ ++I+ K P + NR L
Sbjct: 604 AYQIRYAGSKGMLSVDYKLKGSRTFVVRPSMIKFDAPEAKEIEIVRGIKNPTPYYFNRPL 663
Query: 307 ITLLSTLGIRDHVFEKKQREGVAQL-DAILT--DPLKAHEALELMSSGENTNVLKELLMC 363
I LL LG+ V + Q + VA+ DA L D + E L SS + ++ ++
Sbjct: 664 IMLLEGLGVNYDVLQHFQDKAVAKTQDATLALQDAIDLLENHGLGSSFRRPSTMQNIIQL 723
Query: 364 GYKP-DVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCS 422
G + F +L+ L +L+ RI I + ++G DE L ++F
Sbjct: 724 GIDALQSDAFYGRLLRVAVYHALRDLKNNARIPIPDAWTLVGVADEHNFLGKNEIF---- 779
Query: 423 ASRRREFLDNSCNNRS-GELGVVEGKVVVAKNPCLHPGDMRVLRAVDVP------SLHHM 475
+C +S GE+ +EG V+V+++PC+HPGD++V+ A+ P + +
Sbjct: 780 ----------ACIKKSDGEMIYLEGHVLVSRSPCIHPGDVQVVSAIGRPPKGSCFEVESL 829
Query: 476 VDCVVFPAKGKRPHTNECSGSDLDGDVY--FVCWDHELIPPLQ-FPPMDYTPAPEKVLAR 532
+ VVF KG RP + G DLDGD+Y H+ + PL+ F P YT K L +
Sbjct: 830 QNTVVFSTKGNRPIPSCLGGGDLDGDIYNLLPLAVHKSLTPLRYFKPGKYTSGERKCLDK 889
Query: 533 DMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTG 592
T++DV ++ +YI++D +G++ N +V AD + CL LA+L + AVD+ KTG
Sbjct: 890 PSTMKDVADFVMEYIISDVIGLVANRWLVIADQSQFGIQDRVCLRLAQLHSDAVDYPKTG 949
Query: 593 VAATIPSGLRVEI------YPDFMEKQDKTCYESQRVIGKLYRAV 631
++ +++ P+ ++ Y SQ +G+L RA+
Sbjct: 950 NPVSVAEIPKLKFPLPDWSAPETVDPDPVNYYPSQSAVGRLSRAI 994
>gi|340521489|gb|EGR51723.1| Hypothetical protein TRIREDRAFT_55637 [Trichoderma reesei QM6a]
Length = 1734
Score = 231 bits (590), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 164/473 (34%), Positives = 241/473 (50%), Gaps = 39/473 (8%)
Query: 128 LRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAAR 187
L+ GI I + SNSQ+K + ++ A+ E + + E++GDF +K VAK A R
Sbjct: 124 LKAGISIHGVHYNFYGHSNSQLKSRTCYLCAASKEDISRKV-EALGDFTKMKTVAKKAKR 182
Query: 188 LGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTI- 246
+G F +R A+ VD ++ IPD+EV D + F+DG G I+ LA+ +++
Sbjct: 183 IGLLFSVARAAMQVDPKMVQDIPDIEVGD----FIFTDGCGLIAPHLAKELSRRTRIVFR 238
Query: 247 ---YTPSAFQIRYGGYKGVVAVDPTSSTK---LSLRKSMLKYKSESTSLDILANSKYQPC 300
YTPS FQIRY GYKGVV +DPT + L +RKSM K+ + D L+ S Y
Sbjct: 239 NMRYTPSVFQIRYRGYKGVVTLDPTMAKGVPWLKMRKSMKKF----SGGDDLSFSPYVFG 294
Query: 301 FLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKEL 360
LN ++I LL LGI +KQ+E L +P+ A L ++ E+ E
Sbjct: 295 HLNDEVIVLLDALGISRQTLLRKQQEHFEFLAQAYHNPIVAFRILCHLNMPEDA----EK 350
Query: 361 LMCGYKPDVEPFLLMMLQTFRASNLLELR--TRTRIFIQNGRAMMGCLDETGTLESGQVF 418
++ V P + +++ +L R R RI I R + G D G L+ GQ
Sbjct: 351 VIIDSLDAVRPTINRLVKA-EYDKMLNKRDEQRCRILIPKSRLLFGVCDAWGVLKPGQCA 409
Query: 419 VQCSASRRREFLDNSCNNRSGELGVVEG-KVVVAKNPCLHPGDMRVLRAVDVPSLHHMVD 477
V+ + + G+ ++G KV+V +NPCLHPGD++ L V+ P L H+VD
Sbjct: 410 VKVTM------------DGDGQPYALKGTKVLVTRNPCLHPGDLQKLDVVERPELAHLVD 457
Query: 478 CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIE 537
C+VFP G+RP + SG DLDGD +FV WD ++IP Y E + +T E
Sbjct: 458 CIVFPTTGRRPTADMMSGGDLDGDTFFVTWDPDIIPTTVSQAAHYPGVREPLRFSPITDE 517
Query: 538 DVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSK 590
D YFA Y N SLG + N ++ A A S +C EL +L + VD ++
Sbjct: 518 DRLVYFAKY-TNVSLGRVKNLYLKWA--RATGAMSAECQELNRLFSQCVDGNR 567
>gi|426197730|gb|EKV47657.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1151
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 194/660 (29%), Positives = 322/660 (48%), Gaps = 90/660 (13%)
Query: 25 LEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEI 84
L + + K V+ TSP + +D+ L +VTP+ + +GP SNRV+R Y
Sbjct: 347 LLKTFSKRVMKLGNSTSPLL-VDEALCQTFHAMVTPTTILLTGPFPERSNRVIRRYGKRN 405
Query: 85 -DNFLRLSFVDED-----LDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKK 138
DNFLR+ F +ED LD+ + ++ R+ L+ IVI +
Sbjct: 406 EDNFLRVEFREEDGLQYRLDR-------------DVNGRASLRHRISPILKEKIVIAGRS 452
Query: 139 FETLAFSNSQVKDNSMWMFASRP-------ELTAADIRESMGDFRD-------IKNVAKY 184
F+ LA+S S ++++S+W RP E+ AA I + +G F + I A+Y
Sbjct: 453 FDFLAYSQSALREHSVWF--CRPFVDSDLGEVDAARIIQDLGTFDNLSYDKELINCPARY 510
Query: 185 AARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGF 244
AARL Q+F ++ EA + +I D++ D Y F+DG G +S + A + +
Sbjct: 511 AARLSQAFTAT-EAATFRVEEPQIRKDIKTNDK--QYIFTDGCGCMSEDFAREIWQ---- 563
Query: 245 TIYT---------PSAFQIRYGGYKGVVAVD--PTSSTKLSLRKSMLKYKS-ESTSLDIL 292
T++ P A+QIRY G KG+++VD S ++R SM+K+ + E+ ++I+
Sbjct: 564 TMHPKGRDSEEDFPRAYQIRYAGSKGMLSVDYKLKGSRSFAVRPSMIKFDAPEAKEIEIV 623
Query: 293 ANSKY-QPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQL-DAI--LTDPLKAHEALELM 348
K P + NR LI LL LG+ V + Q + VA+ DA L D + E L
Sbjct: 624 RGIKNPTPYYFNRPLIMLLEGLGVNYDVLQHFQDKAVAKTQDATRALQDAIILLENHGLG 683
Query: 349 SSGENTNVLKELLMCGYKP-DVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLD 407
SS + ++ ++ G + F +L+ L +L+ RI I + ++G D
Sbjct: 684 SSFRLASTMQNIIKLGIDALQSDAFYGRLLRVAVYHALRDLKNNARIPIPDAWTLVGVAD 743
Query: 408 ETGTLESGQVFVQCSASRRREFLDNSCNNRS-GELGVVEGKVVVAKNPCLHPGDMRVLRA 466
E L ++F +C +S GE+ +EG V+V+++PC+HPGD++V+ A
Sbjct: 744 EHNFLGKNEIF--------------ACIKKSDGEMIYLEGHVLVSRSPCIHPGDVQVVSA 789
Query: 467 VDVP------SLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVY--FVCWDHELIPPLQ-F 517
+ P + + + VVF KG RP + G DLDGD+Y H+ + PL+ F
Sbjct: 790 IGKPPKGSCFEVQSLQNTVVFSTKGIRPIPSCLGGGDLDGDIYNLLPLAVHKSLTPLRYF 849
Query: 518 PPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLE 577
P YT K L + T++DV ++ +YI++D +G++ N +V AD + CL
Sbjct: 850 KPGKYTSGERKCLDKPSTMKDVADFVMEYIISDVIGLVANRWLVIADQSQFGIQDRVCLR 909
Query: 578 LAKLSTIAVDFSKTGVAATIPSGLRVEI------YPDFMEKQDKTCYESQRVIGKLYRAV 631
LA+L + AVD+ KTG ++ +++ P+ ++ Y SQ +G+L RA+
Sbjct: 910 LAQLHSDAVDYPKTGNPVSVAEIPKLKFPLPDWSAPETVDPDPVNYYPSQSAVGRLSRAI 969
>gi|171681273|ref|XP_001905580.1| hypothetical protein [Podospora anserina S mat+]
gi|170940595|emb|CAP65823.1| unnamed protein product [Podospora anserina S mat+]
Length = 1721
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 182/557 (32%), Positives = 263/557 (47%), Gaps = 64/557 (11%)
Query: 74 NRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEE------RHTTIYERVLST 127
NR +R P ++ FL +S + S +ST++ R T Y +
Sbjct: 70 NRAIRGEP--LNKFLVVSIAELRAPPGRRPPRSAAATSTDDSLQPSTPRECTDY--AIRL 125
Query: 128 LRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAAR 187
LR GI I + SNSQ+K + + +A PE + + + +GDF +K VAK A R
Sbjct: 126 LRTGISIQGVHYNFYGHSNSQLKSRTCFFYAGSPEEISRKVND-LGDFSKMKTVAKKAKR 184
Query: 188 LGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTI- 246
+ F + A+ + +E IPD+E D Y F+DG G IS LA +A+
Sbjct: 185 ISLLFSTGSVAMLIPPERVEDIPDIETAD----YIFTDGCGLISPNLARELARRDRIIFR 240
Query: 247 ---YTPSAFQIRYGGYKGVVAVD---PTSSTK--------LSLRKSMLKYKS-ESTSLDI 291
YTPS FQIRY GYKGVV VD P K L LRKSM K+ + S +
Sbjct: 241 NRRYTPSVFQIRYRGYKGVVEVDQTMPRPKNKSSDAPPIWLKLRKSMKKFSGGDDYSFSV 300
Query: 292 LANSK-YQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSS 350
+ SK Y +LN + I LLS LGI F +KQ E L+ DP A +S
Sbjct: 301 VEYSKPYTYGYLNDESILLLSALGITHKTFHQKQNEHFQFLEEATRDP---RAAFRFLSY 357
Query: 351 GENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELR--TRTRIFIQNGRAMMGCLDE 408
+ +++LM + + +++ +L R + RI I R + G D
Sbjct: 358 ANMPEMAEKILMADNVEHAQSKVKALVKA-EYGKMLNKRDDQKCRILIPQSRLLFGVCDA 416
Query: 409 TGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEG-KVVVAKNPCLHPGDMRVLRAV 467
L+ G+ V+ + F D G+ ++G +V+V +NPCLHPGDM+ R V
Sbjct: 417 WDCLKEGECAVKVTL-----FED-------GQPAALKGMEVLVTRNPCLHPGDMQKFRVV 464
Query: 468 DVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPE 527
+ P L H+ DC+VF ++G+RP + SG DLDGD +FVCWD +IP P Y A E
Sbjct: 465 ERPELAHLTDCIVFSSRGRRPAADLMSGGDLDGDTFFVCWDKSVIPSTMSEPAKYPGARE 524
Query: 528 KVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKAR---SNQCLELAKLSTI 584
+ + +T +D YFA Y N SLG + ++ A +AR + +C EL +L +
Sbjct: 525 AISFKAITDDDRLVYFAKY-NNMSLGRVKKLYLAWA-----RARGPMAPECQELNRLFSQ 578
Query: 585 AVDFSKTGVAATIPSGL 601
VD G IP L
Sbjct: 579 CVD----GTIIRIPPKL 591
>gi|395334239|gb|EJF66615.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 1225
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 188/620 (30%), Positives = 307/620 (49%), Gaps = 66/620 (10%)
Query: 56 VLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEE 115
V +TP+ + GP SNRV+R Y + FLR+SF DE+ + +
Sbjct: 429 VSITPTTMILEGPFPERSNRVIRMYWQNEECFLRVSFQDENRLQFR--------FDREVD 480
Query: 116 RHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM---FASRPE------LTAA 166
+ I R LR+GI I F LA+S S +K++++W F R + A
Sbjct: 481 GRSFINRRFRGVLRDGITIAGAHFSFLAYSQSALKEHAVWFVKPFRHRDGHGVECYVDAT 540
Query: 167 DIRESMGDFRD------IKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGIT 220
I E++G+FR I A+YAAR+ Q+F ++ ++ VD IE D +ED
Sbjct: 541 TIIENLGNFRVSFDTTLIHCPARYAARIAQAFTATDASITVDVDQIERGED--LEDATGN 598
Query: 221 YCFSDGIGKISAELAEIV-------AKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTK 272
YCF+DG+G IS ELA + + P A+Q+R+ G KG+++VD T S K
Sbjct: 599 YCFTDGVGTISRELAREIWRSVRERGRRSRPDRTYPRAYQVRFQGSKGMLSVDHTLSGRK 658
Query: 273 LSLRKSMLKYKSESTSLDILANS--KYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQ 330
+ +R SM K+++ +S +A + + P FLNR LI LL LG+ + Q V
Sbjct: 659 IVIRPSMTKFEANQSSTIEVARAFDRPGPYFLNRPLIMLLEGLGVSYETLQALQDAAVYD 718
Query: 331 LDAILTDPLKAHEALELMSSGEN---TNVLKELLMCGYKPDVEPFLLMMLQTFRASNLL- 386
+T ++ LE G + T+ + L G P + F +++L
Sbjct: 719 AQQSVTSLERSARLLEAHGLGVSFRLTSAMLGLHKLGLDPLNDDVFWRQAMDFAINHVLR 778
Query: 387 ELRTRTRIFIQ--NGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVV 444
EL+ RI + + ++G D G L+ G++F C +D+ +R L +
Sbjct: 779 ELKHHARIPVPSLDSWTLVGVADVHGELQDGEIFA-C--------IDSPTESR---LIYL 826
Query: 445 EGKVVVAKNPCLHPGDMRVLRAVDVP------SLHHMVDCVVFPAKGKRPHTNECSGSDL 498
EG +++++P +HPGD++V+ A+ P + + + VVF +G+RP + G DL
Sbjct: 827 EGPCLISRSPTIHPGDVQVVHAIGRPPAGSALAKESLRNAVVFSIQGERPLPSCLGGGDL 886
Query: 499 DGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNA 558
DGD+Y V +L+PP + P Y PA +K++ + T+EDV ++ A+YI +D+LG+I
Sbjct: 887 DGDLYNVTTRRDLLPPRTYTPASYEPAAKKLVEHECTMEDVADFVAEYISSDTLGIIATT 946
Query: 559 HVVHADLEPDKARSNQCLELAKLSTIAVDFSKTG--VAATIPSGLRVEIYPDF-----ME 611
+ AD D CL+LA L + AVD+ K+G V L+ + PD+ +
Sbjct: 947 WLKIADQSADGILDQDCLKLAALHSHAVDYPKSGQPVPVNQIPKLKSKTKPDWSAPETIS 1006
Query: 612 KQDKTCYESQRVIGKLYRAV 631
+ ++ Y S + IGKL+R++
Sbjct: 1007 RGNEDYYTSMKAIGKLFRSI 1026
>gi|403164222|ref|XP_003324286.2| hypothetical protein PGTG_05092 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375164936|gb|EFP79867.2| hypothetical protein PGTG_05092 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1282
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 191/624 (30%), Positives = 309/624 (49%), Gaps = 67/624 (10%)
Query: 48 DGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSP 107
D + V +TP+ + GP SN ++R Y D F+R++ DED +
Sbjct: 469 DNVFKCRSVTITPTTLILEGPLPEESNSILRLY-DYNSAFIRVAIRDEDGSNYHH----- 522
Query: 108 LISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM---FASRPELT 164
+ T + +R L +G+ + ++F L +S+S +K + W F + +
Sbjct: 523 ---DREVDGRTFLKQRYRPFLVDGLYVAGRRFMFLGYSSSALKCHQAWFVCPFVHKGAVM 579
Query: 165 AAD-IRESMGDFRDIKNV-AKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYC 222
+A+ IR MG F + + A+Y AR+ Q+F ++++A+ + S + IPDV+
Sbjct: 580 SAEKIRSRMGTFSLVNRIPARYMARIAQAFTTTQKAVTLAPSQLRKIPDVQRNGS----V 635
Query: 223 FSDGIGKISAELAEIVAKNCGFTIY--------TPSAFQIRYGGYKGVVAVDPTSSTKL- 273
F+DG+G IS LA V + T+ S +QIR GGYKG++++DPT + ++
Sbjct: 636 FTDGVGTISPSLARQVEQALLGTMMVLKRRNAINSSCYQIRLGGYKGMLSIDPTLAGEIV 695
Query: 274 SLRKSMLKYKSESTSLDILANSKYQ-PCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLD 332
LR SM K+ ++S +LDI ++ + P FLNR LI +L L I HVF Q++ V ++
Sbjct: 696 GLRPSMSKFDADSYTLDIASSFRRPLPSFLNRPLIKILEDLKIPSHVFMTAQQKTVRSIE 755
Query: 333 ---AILTDPLKAHEALELMSSGENTNVLKEL--LMCGYKPD--VEPFLLMMLQTFRASNL 385
K E L S +LK LM PD F+ L L
Sbjct: 756 RSRESFRQSAKLMEKAGLGFSSSFPKILKRFSSLMRTDNPDEVRSTFIDDCLDLAVIECL 815
Query: 386 LELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGE-LGVV 444
+L+ R RI ++ ++G DE L+ GQ++ +C G+ +
Sbjct: 816 RDLKYRARIPLEGSYTLVGVADEEFCLQEGQIY--------------ACVQEKGKPRKYL 861
Query: 445 EGKVVVAKNPCLHPGDMRVLRAVDVP-----SLHHMVDCVVFPAKGKRPHTNECSGSDLD 499
GK+ ++++P +HPGD++V+ A+ P L +V+CVVF GKR + G DLD
Sbjct: 862 SGKIAISRSPSIHPGDVQVVHAIGRPPPGSEKLGALVNCVVFSVIGKRSLPSCLGGGDLD 921
Query: 500 GDVYFVCWDHELIPPLQ--FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICN 557
GD+Y + D ++IP + P Y+P +L + TI D E+F DYI +D +G+I
Sbjct: 922 GDLYSLITDPQMIPFQKDICSPGSYSPIQPILLPQPCTILDGIEFFLDYISSDLVGIIAT 981
Query: 558 AHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVE-IYPDFM------ 610
H+ AD + CL+LA+L + AVD+ KTGV +I +VE PDFM
Sbjct: 982 RHLQIADQQTLGTLHPDCLKLAELHSKAVDYPKTGVPVSIQDLPKVESAKPDFMCPEYML 1041
Query: 611 ---EKQDKTCYESQRVIGKLYRAV 631
+K ++ YES +V+G+L+RA+
Sbjct: 1042 NVHKKGNERYYESDKVLGRLFRAI 1065
>gi|159123458|gb|EDP48577.1| RNA-directed RNA polymerase, putative [Aspergillus fumigatus A1163]
Length = 809
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 156/493 (31%), Positives = 247/493 (50%), Gaps = 51/493 (10%)
Query: 128 LRNGIVIGDKKFETLAFSNSQVKDNSMWMF-ASRPELTAADIRESMGDFRDIKNVAKYAA 186
L+ GI++ + S+SQ++ + ++ S+ E+ A++ ES+GDF IK VAK A
Sbjct: 109 LKEGIILNGVLYSFYGHSSSQLRSRACYLLRGSKNEV--AELVESLGDFSGIKTVAKKAK 166
Query: 187 RLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGF-- 244
R+G F S + V E+I D+E Y F+DG G + A+ A ++++
Sbjct: 167 RIGLLFSSCHALMKVPDGTYEVIDDIEFSG----YNFTDGCGLVGAKTARVLSQKLSIIS 222
Query: 245 --TIYTPSAFQIRYGGYKGVVAVDPTSSTK--LSLRKSMLKYKS-ESTSLDILANSKYQP 299
T Y P+ +QIR+ GYKGVV ++P + R+SM K+ S ++ SK QP
Sbjct: 223 RNTRYHPAVYQIRFKGYKGVVMLEPQMPPQYWFQFRRSMRKFSGIGDRSFAVVEYSKTQP 282
Query: 300 C-----------------FLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAH 342
+LN ++I LL TLG+ VF +KQ+E +L +T+P A
Sbjct: 283 ATPLFYSLPLMVQPYTYGYLNDEVILLLHTLGVSAEVFLRKQKEHFQRLQESVTEPTVA- 341
Query: 343 EALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELR--TRTRIFIQNGR 400
+ S ++ ++L++ G + L L +L R + RI + R
Sbjct: 342 --FTFLCSLNRFDLAEKLVLHGI--ERVSGALRSLVADEHKKMLNKREDQKCRILVPESR 397
Query: 401 AMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGD 460
+ G D G L+ G+ F++ + D+ R +V +VVV +NPCLHPGD
Sbjct: 398 LVFGVCDPRGVLQEGECFLRVT--------DDMNGGRPRT--IVGCEVVVTRNPCLHPGD 447
Query: 461 MRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPM 520
+R L+AVD P L H+ DC+VF KG+RP ++ SG DLDGD +FVCWD +L+P
Sbjct: 448 LRKLKAVDRPELSHLRDCIVFAVKGERPAADQMSGGDLDGDTFFVCWDPDLVPSTVSEAA 507
Query: 521 DYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAK 580
Y P E ++T++ EYFA Y + SLG + A L+ A S +C E+ +
Sbjct: 508 HYPPGREPFAVEEITVDHRIEYFARY-TSISLGRTKKLFLAWAILK--GAFSVECQEINR 564
Query: 581 LSTIAVDFSKTGV 593
L ++ VD ++ +
Sbjct: 565 LHSLCVDGNRIKI 577
>gi|170094614|ref|XP_001878528.1| RNA-directed RNA polymerase [Laccaria bicolor S238N-H82]
gi|164646982|gb|EDR11227.1| RNA-directed RNA polymerase [Laccaria bicolor S238N-H82]
Length = 1051
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 185/670 (27%), Positives = 307/670 (45%), Gaps = 99/670 (14%)
Query: 36 RRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDE 95
++F A + LI V +TP+++ GP + SN +R Y DNF+R+ F DE
Sbjct: 197 QKFKPRKARGFNASLISAAHVTITPTRMLLEGPLPTQSNNAIRKYKGCDDNFIRVDFRDE 256
Query: 96 DLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMW 155
D S + + + + + ERV L+ GI+I + F+ LA+S S ++++++W
Sbjct: 257 DR--------SSYKRNQDVDDMSVLRERVGDVLKQGIMIAGRHFQFLAYSTSSLREHAVW 308
Query: 156 MFASRPE----LTAADIRESMGDFRDI-KNVAKYAARLGQSFGSSREALHVDSSDIEIIP 210
+S +T + +GDF + + +KYAAR+ Q F ++ ++H+ + E +
Sbjct: 309 FMSSFESGGEMITPQKVVRDLGDFSALAQQPSKYAARIAQKFSATDPSVHIHGHEWERVD 368
Query: 211 DVEV-------EDDG------ITYCFSDGIGKIS----AELAEIVAKNCGF---TIYTPS 250
D+E DDG +CF+DG+G IS E+ E + N G PS
Sbjct: 369 DIEYIEERTIRNDDGDIETRKTVHCFTDGVGTISESLGQEIFETLRNNEGRLEEKAPLPS 428
Query: 251 AFQIRYGGYKGVVAVDP-----TSSTKLSLRKSMLKYKS--ESTSLDILANSKY-QPCFL 302
A+QIR+ G KGVV VD +S ++ LR SM+K+ S +S L+I +Y + C+L
Sbjct: 429 AYQIRFMGSKGVVVVDKQLDKNSSGIRMRLRPSMIKFPSLAQSEPLEISEAFRYPKLCYL 488
Query: 303 NRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL------ELMSSGENTNV 356
NR L+ L LG+R F Q +A+ I D L+ ++ L S + ++
Sbjct: 489 NRPLVMFLEDLGVRLQTFLDLQNAAIAEAQTI-DDSLEQFRSIMETHRGGLGKSFDFPDI 547
Query: 357 LKELLMCGY-------KPDVE-PFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDE 408
LK G+ +P ++ F+ + R L E++ RI I + ++G DE
Sbjct: 548 LKHFEDDGFDLHSQDGRPGIDNQFIKQLRNVARIEVLREIKHSARIKIPDSYLLVGVADE 607
Query: 409 TGT-----------LESGQVF--VQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPC 455
L G ++ VQ + + +L SC+ ++++P
Sbjct: 608 GPAYRKDGYQNVYELPEGHIYACVQKAGDKEPTWLSGSCS--------------ISRSPV 653
Query: 456 LHPGDMRVLRAVDVPS------LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDH 509
HPGD++ +R + P H+V+ VV P+ GKR + G DLDGD+Y V
Sbjct: 654 AHPGDVQRVRCIGKPPEDKLCLFSHLVNVVVLPSVGKRSLASCLGGGDLDGDIYSVIMLE 713
Query: 510 ELIPPLQFPPMDYTPAPEKVLARDMTIED-VEEYFADYIVNDSLGVICNAHVVHADLEPD 568
L+P P Y P + L +IE+ V ++ +YI +D LG++ N +V AD +
Sbjct: 714 PLLPTQMVVPASYDSLPPRALPPGQSIEEAVCDFIVEYIHSDVLGLLSNRLLVIADQSKE 773
Query: 569 KARSNQCLELAKLSTIAVDFSKTGVAATIPSGL----RVEIYPDFMEKQ-----DKTCYE 619
C LA L + AVD+ K G + G + PD+ + Y+
Sbjct: 774 GVFDQDCEHLAVLCSQAVDYPKQGNPVDLSGGALPHPLIRCKPDWQSAEINAPRQTDYYK 833
Query: 620 SQRVIGKLYR 629
S R +G ++R
Sbjct: 834 STRALGVMFR 843
>gi|45861741|gb|AAS78669.1| RdRp1m truncated protein [Nicotiana benthamiana]
Length = 479
Score = 226 bits (577), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 107/164 (65%), Positives = 137/164 (83%), Gaps = 1/164 (0%)
Query: 4 IEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKV 63
IEHALE L++L+ECCY+PVRWL EQY +Y+ R+ SP++ LDDGL+YV +V+VTP KV
Sbjct: 308 IEHALEKLYYLKECCYDPVRWLTEQYDEYLKRRQLPKSPSITLDDGLVYVRRVVVTPCKV 367
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYER 123
YFSGPE+++SNRV+R+Y ++IDNFLR+SFVDE+ +K++ST L P S+ N R T IY R
Sbjct: 368 YFSGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIHSTDLLPRASTGNGMR-TDIYLR 426
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAAD 167
+LSTLRNG VIGDKKFE LAFS+SQ++DNS+WMFASRP LTA D
Sbjct: 427 ILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAND 470
>gi|393247225|gb|EJD54733.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1245
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 190/623 (30%), Positives = 307/623 (49%), Gaps = 75/623 (12%)
Query: 56 VLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEE 115
V V+PS V +GP SNR++ ++ + ++F+R++F D D N +
Sbjct: 451 VAVSPSSVSITGPIPDRSNRILHAFGNFQEHFIRVAFTDNDGQTFRY--------DANVD 502
Query: 116 RHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMF------ASRPELTAADIR 169
+ VL L+NG +G + FE LA+S S +K +S+WM A R +A+ IR
Sbjct: 503 TQALVRSHVLPILQNGFKLGGRLFEYLAYSQSALKQHSVWMVHPFTDTAGR-RHSASTIR 561
Query: 170 ESMGDF-RDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIG 228
MG F +D + A+ AR+ +F ++ + + SS+ + PD+ DG C SDG G
Sbjct: 562 ADMGTFTKDERCPARVGARMSLAFSATEPSGELLSSNRRMEPDIG--GDG-PACMSDGSG 618
Query: 229 KISAE-LAEIVAKNC-GFTIYT-------PSAFQIRYGGYKGVVAVDPTSSTK-LSLRKS 278
IS E +A + + C G + T PS Q+R GG KG + VDP + + LR S
Sbjct: 619 LISIEAMAAVWMEFCRGRSKRTVIRPPPPPSVIQVRVGGAKGTLFVDPMLPGRAVVLRPS 678
Query: 279 MLKYKSESTSLDI---LANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAIL 335
M+K+++ I +A +K P +LNR LI +L G+ F + Q++ V + +
Sbjct: 679 MMKFEAGERFNQIEVCMAFTKPSPAYLNRPLIMVLEARGVPKETFLRLQQD-VVERTQLA 737
Query: 336 TDPLKAHEALELMSSGENTNVLKELLMCGYK------PDVEPFLL----MMLQT--FRAS 383
T L++ AL L S+G V L + P+V+ ++L + +T F +
Sbjct: 738 TRTLESAAAL-LESNGLGGPVGLPTLFRRIRQRFSNFPEVDSYVLTQDAFVARTLDFTVN 796
Query: 384 NLLE-LRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELG 442
++L L+ R RI I ++G D G L G++FV C R E + ++
Sbjct: 797 HVLRGLKFRGRIPIPFSWTLVGVPDHHGILNEGEIFV-CI---REEDIS--------QVE 844
Query: 443 VVEGKVVVAKNPCLHPGDMRVLRAVDVP------SLHHMVDCVVFPAKGKRPHTNECSGS 496
+EG VVV+++P HPGD+ +++A+ P + ++CVVF KG R + G
Sbjct: 845 YLEGDVVVSRSPTCHPGDVMIMKAIGRPPAGTAFATERPINCVVFSTKGARSPGSCLGGG 904
Query: 497 DLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVIC 556
D DGD Y V L P P Y P + + R T+ED+ E+F ++++ND L I
Sbjct: 905 DYDGDEYVVTKLPSLRPTKPAGPAMYKNTPRQDIGRPYTMEDIYEFFTNFVINDQLPRIA 964
Query: 557 NAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAAT---IPSGLRVEIYPDF---- 609
+ + AD + + QC++LA+L ++AVD+ KTGV IP PD+
Sbjct: 965 SLWLRIADSSEESVYNEQCMKLAELHSVAVDYPKTGVPVNHSDIPQA--PNRIPDWSISE 1022
Query: 610 MEKQDK-TCYESQRVIGKLYRAV 631
+ D+ Y S++ +G L+RAV
Sbjct: 1023 LGASDRDRVYRSEKALGYLFRAV 1045
>gi|390597813|gb|EIN07212.1| RdRP-domain-containing protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 1217
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 182/668 (27%), Positives = 312/668 (46%), Gaps = 83/668 (12%)
Query: 36 RRFLTSP--AVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFV 93
+R L P A G+ + PS++ GP + NRV+R Y ++F+R+ F
Sbjct: 387 QRLLLKPRTATTCPSGMFSCYHITFCPSRMILEGPFPTQGNRVIREYSGYEEHFVRVDFR 446
Query: 94 DED-LDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDN 152
+ED L + + + + + ERV L+ G + + F+ LA+S+S +K +
Sbjct: 447 EEDGLQYRWDREV---------DCRSFLAERVGRILKEGFELAGRHFQFLAYSSSALKQH 497
Query: 153 SMWMFA-----SRPELTAADIRESMGDF----------RDIKNV------AKYAARLGQS 191
++W + + A IR+ +GDF RD K + +KYAAR+ Q+
Sbjct: 498 AVWFVHPFEHHEKGSVDAYIIRDRLGDFSGAIDNNNETRDAKTIQLRMQPSKYAARMAQA 557
Query: 192 FGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIV-AKNCGFTIY--- 247
F ++ ++ ++ + IPD+ E + +DG G IS +LA+++ A C Y
Sbjct: 558 FTATDPSVRINEDQWQEIPDLGKE----PHLHTDGCGTISRKLADMIWAALCKDRPYFQA 613
Query: 248 ---TPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYKSEST-SLDI-LANSKYQP-- 299
+P +QIR+ GYKG+V VD T ++ LR SM K+++ T S +I +A ++P
Sbjct: 614 CKSSPDCYQIRFLGYKGIVTVDETLEGEQMCLRPSMNKFRAHKTPSAEIEIAKPFWKPTQ 673
Query: 300 CFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTN---- 355
LNR LI +L G+ F K Q E V ++ L +G +N
Sbjct: 674 VNLNRALIMILEDRGVSWKCFMKLQDEAVRDINTASFSIDNFVRMLSDRGAGLGSNYRLL 733
Query: 356 -VLKELLMCGY--------KPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCL 406
+++ L G+ +P PF+L +++ R L E++ I +++ + G
Sbjct: 734 YIMRNLAELGFDFKQRLRVQPLSHPFILRLVEFIRHHLLREIKHGASIPLRDAYLLPGVA 793
Query: 407 DETGTLESGQVFVQCSASRRREFLDNSCNNRSGEL--GVVEGKVVVAKNPCLHPGDMRVL 464
DE E+ + R F +C ++ ++G V+ ++P +HPGD++ +
Sbjct: 794 DEGPAYEARGHQNVFKLAENRIF---ACVQGPDDVEPKWLKGNCVIWRSPVVHPGDIQRV 850
Query: 465 RAVDVPS------LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFP 518
A+ P + + VV P+ G+R + G DLDGD Y V L+P Q P
Sbjct: 851 YAIGKPPEDQLCFFSRLKNVVVLPSVGERSLASCLGGGDLDGDEYCVSMLPTLLPTEQQP 910
Query: 519 PMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLEL 578
P +Y P L R I+D+ ++ +Y+ +D LG++ + H+V AD D R +CL L
Sbjct: 911 PAEYPPVETLTLDRPAEIDDICDFIVEYVHSDVLGLLSDKHLVIADQSKDGVRDEKCLRL 970
Query: 579 AKLSTIAVDFSKTGVAATIPSGLR-----VEIYPDF-----MEKQDKTCYESQRVIGKLY 628
A+L + AVD++K G+A + R + PD+ + + YES R +G LY
Sbjct: 971 AELCSQAVDYAKNGIAINLAKEKRAMKQLIPFKPDWHAAEIISPRSTDYYESSRALGHLY 1030
Query: 629 RAVKDIAP 636
R ++ P
Sbjct: 1031 REIRLTEP 1038
>gi|409051493|gb|EKM60969.1| hypothetical protein PHACADRAFT_168316 [Phanerochaete carnosa
HHB-10118-sp]
Length = 968
Score = 223 bits (567), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 166/526 (31%), Positives = 267/526 (50%), Gaps = 56/526 (10%)
Query: 56 VLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLDKLYSTVLSPLISSTNE 114
V VTP+ GP SNRV+R+Y + D F+R++FVDE DL + +
Sbjct: 433 VTVTPTTHRPEGPYPERSNRVMRTYSNNHDCFVRVNFVDETDLQFRFDREV--------- 483
Query: 115 ERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMW-----MFASRPELTAADIR 169
+ I RV L NGIV+ + FE LA+S S +K++++W + + A I
Sbjct: 484 DGRAFIKRRVGEVLANGIVVAGRYFEFLAYSQSALKEHAVWFVKEFLLPDGTVVNACTII 543
Query: 170 ESMGDF-RDIKNV---AKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSD 225
+GDF RD + + A+Y AR+ Q+F ++ ++ V++ ++ +PD+E D T+CF+D
Sbjct: 544 AGLGDFTRDRQLIYCPARYGARISQAFTATDSSVTVEAEEVIEVPDIE--DPTGTWCFTD 601
Query: 226 GIGKISAELAE-----IVAKNCGFTIYT-PSAFQIRYGGYKGVVAVDPTSSTK-LSLRKS 278
G+G +S LA + A+ G T P A QIR+ G KG+++VD T S + + LR S
Sbjct: 602 GVGTMSVRLAREIWKVLAARRRGSRWQTYPRALQIRFQGSKGMLSVDHTLSGRAICLRPS 661
Query: 279 MLKYKS-ESTSLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILT 336
M+K+++ S +++ A ++ P +LNR LI +L LG++ VF+ Q V +
Sbjct: 662 MIKFEALNSNQIEVARAFNRPGPFYLNRPLIMILEHLGVQHEVFQDLQDAAVMDAQQSVE 721
Query: 337 DPLKAHEALELMSSGEN---TNVLKELLMCGYKPDVEPFLLMMLQTFRASNLL-ELRTRT 392
KA LE G + T+V L P E + F +++L EL+
Sbjct: 722 SLEKAARLLETFGLGASFRLTSVFLSLHKLAVGPLTEDNFWRKMMDFAVNHVLRELKHHA 781
Query: 393 RIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVV--EGKVVV 450
RI + N ++G D G LE +VF C + G + +G+V+V
Sbjct: 782 RIPVPNAWNLVGVADVHGYLEEHEVF--------------GCIYPTDGTGPIYLDGRVLV 827
Query: 451 AKNPCLHPGDMRVLRAVDVPS------LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYF 504
++P +HPGD++V++ + P + + +VF KG RP + G DLDGD Y
Sbjct: 828 TRSPTIHPGDVQVVQGIGRPPPGSPFERESLRNTLVFSVKGTRPLPSYLGGGDLDGDEYR 887
Query: 505 VCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVND 550
V L+PP + P YTPA +K+L R T++DV ++ +YI +D
Sbjct: 888 VTMLDPLLPPRTYLPASYTPAEKKLLDRPSTMKDVADFVMEYINSD 933
>gi|395334238|gb|EJF66614.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 1233
Score = 222 bits (566), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 191/637 (29%), Positives = 304/637 (47%), Gaps = 78/637 (12%)
Query: 55 KVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNE 114
++ VTP+ + GP SNRV+R Y D FLR+SF DE+ L N
Sbjct: 434 RLTVTPTTMILEGPFPERSNRVMRKYYHSQDCFLRVSFQDENR----------LQYRFNR 483
Query: 115 E--RHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM---FASRPE------L 163
E I RV L GI I F LA+S S +K++++W F R +
Sbjct: 484 EVDGRRFIDLRVKRVLLEGIRIAGAHFRFLAYSQSALKEHAVWFVKPFRYRDSHQNVHFV 543
Query: 164 TAADIRESMGDFRDI-------KNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVED 216
A I +S+G F ++ + A+YAAR+ Q+F ++ A+ + + + D++ +
Sbjct: 544 DATTIIQSLGQFHNLPFDPTLMRCPARYAARISQAFTATDAAVSMAVGVVYMGRDIKGRN 603
Query: 217 DGITYCFSDGIGKISAELAEIVAK----NCGFTIYT---PSAFQIRYGGYKGVVAVD-PT 268
F+DG+G +S LAE + K G T P AFQ+R+ G KG+++VD
Sbjct: 604 G--KDVFTDGVGTLSPMLAESIWKALQSRSGKTRKGKTYPRAFQVRFQGSKGMLSVDYKL 661
Query: 269 SSTKLSLRKSMLKYKSESTSLDILANSKYQPC--FLNRQLITLLSTLGIRDHVFEKKQRE 326
+ + LR SM+K+ +++ +A + +P +LNR LI LL LG+ F+K Q +
Sbjct: 662 TDNAIMLRPSMIKFDDSKSAIVEVARAFDRPGAYYLNRPLIMLLEGLGVPYTTFKKLQDD 721
Query: 327 GVAQLDAILTD---PLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRAS 383
V +T K E L S V+ L G P + + F +
Sbjct: 722 AVRDAQTSVTSLKLSAKLFEDHGLGVSFRIAPVMLGLHKLGLGPLDDDIFWRQMMDFAVN 781
Query: 384 NLL-ELRTRTRIFI--QNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGE 440
++L EL+ R RI + + ++G D L+ G++FV C + E
Sbjct: 782 HVLRELKHRARIPVPGTDSWTLVGVADIHRELKEGEIFV--------------CVDSPKE 827
Query: 441 LGVV--EGKVVVAKNPCLHPGDMRVLRAVDVP------SLHHMVDCVVFPAKGKRPHTNE 492
G++ EG VV+++P +HPGD+++ A+ P + + + VVF G RP +
Sbjct: 828 KGLIFLEGPCVVSRSPTIHPGDVQIATAIGRPRPGSHYDVESLRNTVVFSTTGSRPLPSC 887
Query: 493 CSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSL 552
G DLDGD Y V +L+P + P Y PAP K++ + T++DV E+ A++I +D+L
Sbjct: 888 LGGGDLDGDEYNVTTRPDLMPKRTYDPASYEPAPRKMVDHESTMDDVAEFVAEFISSDTL 947
Query: 553 GVICNAHVVHADL--EPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLR--VEIYPD 608
G+I ++ AD + D + CL LA+L ++AVD++KTG I R + I PD
Sbjct: 948 GIIATNWLITADQTNDTDGILNPDCLRLAELHSLAVDYAKTGQPVPIEQIPRPPLRIKPD 1007
Query: 609 FME------KQDKTCYESQRVIGKLYRAVKDIAPPTA 639
+ K + Y S +GKL+RA+ A TA
Sbjct: 1008 WNAPETHSGKNSLSFYRSMTAVGKLFRAIDLPAVQTA 1044
>gi|116200327|ref|XP_001225975.1| hypothetical protein CHGG_08319 [Chaetomium globosum CBS 148.51]
gi|88179598|gb|EAQ87066.1| hypothetical protein CHGG_08319 [Chaetomium globosum CBS 148.51]
Length = 1176
Score = 221 bits (564), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 173/600 (28%), Positives = 280/600 (46%), Gaps = 73/600 (12%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
+ + +VTPS++ GPE NRV+R YPD F+R F DE+ L+ L S
Sbjct: 426 IFRAVVTPSRITLHGPEPEPMNRVLRKYPDH-SYFIRTQFCDENGQDLFFNARVSLDS-- 482
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIR--- 169
IY+R S L NGI + + ++ L FS+S ++ +S W+ S P ++
Sbjct: 483 -------IYDRFKSVLSNGIQVAGRVYKLLGFSHSSLRAHSAWL--SAPFFHQGQVQIPT 533
Query: 170 ---ESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI--IPDVEVEDDGITYCFS 224
+G+F IK+ A+ AAR+GQ+F + A+ + + +E+ I D+ ++ FS
Sbjct: 534 LIVTGLGNFDKIKSPARRAARIGQAFSETPWAIDLVAHSVEVWEIDDIVRNEE----VFS 589
Query: 225 DGIGKISAELA----EIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSM 279
DG+GK+S ++A +++ ++ GF P+ FQIR G KG++A+DP K + +R SM
Sbjct: 590 DGVGKLSQDVARLVYDVIPRSKGF----PTCFQIRQAGAKGMLAIDPGLGGKVICIRPSM 645
Query: 280 LKYKSESTSLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDP 338
K+ S L+I S P LNRQLI +L +G + F Q + +L I +
Sbjct: 646 SKFDSTDKQLEICDMASNPMPMVLNRQLIKILEDMGAPNQWFLNLQSRELQRLRTISSTV 705
Query: 339 LKAHEALELMSSGENTNV---LKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIF 395
L GE+ + L+++ G + FL ++ S L L+ + RI
Sbjct: 706 YNTASFLRAQRIGESIRLHKFLRQIETMGLDYRRDDFLRGAVEAVLLSELRLLKHKARIP 765
Query: 396 IQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPC 455
++NG + G +DETG L+ G+V+V R P
Sbjct: 766 VRNGMTLFGIMDETGFLKEGEVYVTFDPEEDRH-----------------------SQP- 801
Query: 456 LHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPL 515
PG RVL + + G+R +N+ SG DLDGDV+ + WD ++ +
Sbjct: 802 --PGPGRVLSS--------SAIASSSASGGERSPSNQLSGGDLDGDVFHIIWDPAVVNAV 851
Query: 516 Q-FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQ 574
+ F P Y L R +T ED+ +F D++ D LGVI H++ AD
Sbjct: 852 RTFKPAAYPRVQPLELDRPVTPEDIAAFFVDFMRTDHLGVIATRHMILADQREKGTLDGD 911
Query: 575 CLELAKLSTIAVDF-SKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKD 633
C +LA+L + A+ K+ + R + D Y S +++G+LYRAV++
Sbjct: 912 CKKLAELHSAAITIHDKSAIDMEEHFAPRGDDDDDDDSGPRHQYYRSDKILGQLYRAVEE 971
>gi|392567096|gb|EIW60271.1| RdRP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 1228
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 191/648 (29%), Positives = 318/648 (49%), Gaps = 91/648 (14%)
Query: 47 DDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDED-LDKLYSTVL 105
D G + + TP++V GP +S+SNRV+R + D+F+R+ F DED L ++ +
Sbjct: 421 DMGKFQCHHITFTPTRVILEGPYVSVSNRVIRQFAGFEDHFVRVDFRDEDRLQYRWAREV 480
Query: 106 SPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMF-----ASR 160
+ T + ERV L++G +G +++E LA+S+S ++++++W ++
Sbjct: 481 ---------DGTTLLTERVGGILKHGFELGGRQYEFLAYSSSALREHAVWFMNPFEHPTQ 531
Query: 161 PELTAADIRESMGDFRD-IKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGI 219
+ A IR+S+GDF + IK +KYAARL Q+F ++ ++ + E + D+E E +
Sbjct: 532 GFVCAQRIRDSLGDFTNVIKQPSKYAARLAQAFTATDPSVSISRDQWEEMEDLESEQE-- 589
Query: 220 TYCFSDGIGKISAELAEIV------AKNCGFTI-YTPSAFQIRYGGYKGVVAVDPT-SST 271
Y F+DG+G IS EL +++ AK + +TP A+QIR+ G+KGVV +D
Sbjct: 590 DYLFTDGVGTISQELGDMIWEALCTAKESLRRVDHTPHAYQIRFLGFKGVVVIDKRLKGI 649
Query: 272 KLSLRKSMLKYKSESTSLDILANSKY--QP--CFLNRQLITLLSTLGIRDHVFEKKQREG 327
K+ LR SM K++ + + +++ +P +LN+ LI +L G+ F K Q
Sbjct: 650 KMRLRPSMNKFEVPDMDIAPIEIARWFDRPGTSYLNKALIMILEDRGVEQKAFLKLQEMA 709
Query: 328 VAQL----DAILTDPL--KAHEALELMSSGENTNVLKELLMCGYKPDVEP---------- 371
AQ+ D I + L KAH L S VLK L G EP
Sbjct: 710 AAQITTASDTITSTTLLLKAHN---LGQSFNIPFVLKALRAAGLGMRGEPDSPAGDLGDT 766
Query: 372 FLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGT-----------LESGQVF-- 418
FL +L + L +++ RI I + ++G DE L+ GQ++
Sbjct: 767 FLRSLLIFAQHHILRDIKHGARIPIPDSYLLVGVADEGPVYEKEGVEDVFMLQEGQIYAC 826
Query: 419 VQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS------L 472
+Q A + +L +G V ++++P +HPGD++ + A+ P
Sbjct: 827 IQNEADEKPVYL--------------KGTVSISRSPVVHPGDVQRVWAIGEPPAGKECFF 872
Query: 473 HHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVL-- 530
+ + VV P+ GKR + G DLDGD+Y + LIP P Y + L
Sbjct: 873 RGLKNVVVLPSVGKRSLASMLGGGDLDGDLYSIIKYDPLIPIEHAEPGSYVSVGTRSLPD 932
Query: 531 ARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSK 590
RD T++D+ ++ +YI +D LG++ + H++ AD D CLELA+L + AVD+ K
Sbjct: 933 GRDSTVDDICDFIVEYINSDVLGLLSDRHLIIADQSKDGTSDPACLELARLCSQAVDYPK 992
Query: 591 TGVAATI--PSGLRVEIYPDFMEKQDKTC-----YESQRVIGKLYRAV 631
GV I L + PD+ + +D Y S R +G+L+R++
Sbjct: 993 NGVPVDIFDSPKLLIREKPDWKKAEDSDPRDTDYYFSSRALGELFRSI 1040
>gi|426197722|gb|EKV47649.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1202
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 189/648 (29%), Positives = 314/648 (48%), Gaps = 71/648 (10%)
Query: 55 KVLVTPSKVYFSGPEISLSNRVVRSYPD-EIDNFLRLSFVDEDLDKLYSTVLSPLISSTN 113
+V ++P+ ++ +GP I SNRV+R Y +NFLR+ F DE+ + Y S +
Sbjct: 402 QVTISPTSIFLNGPFIDKSNRVLRRYSKANHENFLRVEFRDEN-NLQYR-------SDKD 453
Query: 114 EERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPE-----LTAADI 168
+ + R+ + G+VI ++F LA+S S ++++S+W + + + A I
Sbjct: 454 IDDEEFVRRRLGHFMHEGLVIAGRRFRFLAYSQSALREHSVWFVKAFRDPKHGIVNAGKI 513
Query: 169 RESMGDFRDIKN-------VAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITY 221
ES+G+FRD+ A++ AR+ Q+F ++ A+ V+ +I I D+ D Y
Sbjct: 514 IESLGNFRDLAYDRTLGYCPARFGARVSQAFSATDAAI-VEVDEILIKRDITTPDG--QY 570
Query: 222 CFSDGIGKISAELA----EIVAKNCGFTIYTPSAFQIRYGGYKGVVAVD--PTSSTKLSL 275
F+DG G +SA+LA +A+ + P A+QIR+ G KG+++VD S LSL
Sbjct: 571 TFTDGSGDMSADLARDIWHRIARKRDRNDF-PRAYQIRHEGSKGMISVDYRLNGSNTLSL 629
Query: 276 RKSMLKYKS-ESTSLDI-LANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDA 333
R SM+K+ + ES +++ A + P +LNR LI +L LG++ VF+ Q E V
Sbjct: 630 RDSMIKFDAPESNEIEVSRAIDQPTPYYLNRFLIMILEGLGVKHEVFQGFQDEAVRGTQQ 689
Query: 334 ILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVE-----PFLLMMLQTFRASNLLEL 388
+ A L+ G + + K D++ P L+ L +L
Sbjct: 690 AMEHLSSASHLLQAHGLGLTFKIPSTMANLS-KLDLDNLVRDPLFDQPLRLGVYHVLRDL 748
Query: 389 RTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKV 448
+ + RI I N ++G D G L++ +VFV + F +EG V
Sbjct: 749 KYKARIPIPNAWTLVGVADTHGYLKADEVFVCIKHPEKGSFY-------------LEGPV 795
Query: 449 VVAKNPCLHPGDMRVLRAVDVP------SLHHMVDCVVFPAKGKRPHTNECSGSDLDGDV 502
+++++P +HPGD+++ A+ P + + + VVF KG RP + G DLDGD
Sbjct: 796 LISRSPTIHPGDVQLAMAIGGPRQGSPFAREPLPNTVVFSVKGDRPLPSCLGGGDLDGDP 855
Query: 503 YFVC--WDHELIPPLQ-FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAH 559
Y + DH P + + P +Y A +++ T++DV ++ YIV+D +GV+
Sbjct: 856 YNIIPLRDHPYFTPEKTYEPANYEAAEKQLTEWPCTMKDVADFVMQYIVSDVIGVVATNW 915
Query: 560 VVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAAT---IPSGLRVE---IYPDFMEK- 612
++ AD D + CL LAKL + AVD+ KTG IP + + P+ +E
Sbjct: 916 LIIADQRKDIT-DDDCLVLAKLHSDAVDYPKTGRPVQQDHIPRPRNPKPDWLAPETLENV 974
Query: 613 --QDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDME 658
Q YESQ +GKL RA+ A A ++ MQ+ +E
Sbjct: 975 LSQGGRYYESQTALGKLTRAIDLKAHEPAVAPQSRRKRPMQTATRQIE 1022
>gi|409080807|gb|EKM81167.1| hypothetical protein AGABI1DRAFT_56570 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1201
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 185/625 (29%), Positives = 306/625 (48%), Gaps = 79/625 (12%)
Query: 55 KVLVTPSKVYFSGPEISLSNRVVRSYPD-EIDNFLRLSFVDEDLDKLYSTVLSPLISSTN 113
+V ++P+ ++ +GP I SNRV+R Y +NFLR+ F DE+ + Y S +
Sbjct: 400 QVTISPTSIFLNGPFIDKSNRVLRRYSKANHENFLRVEFRDEN-NLQYR-------SDKD 451
Query: 114 EERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPE-----LTAADI 168
+ + R+ + G+VI ++F LA+S S ++++S+W + + + A I
Sbjct: 452 IDDEEFVRRRLGHFMHEGLVIAGRRFRFLAYSQSALREHSVWFVKAFRDPKHGIVNAGKI 511
Query: 169 RESMGDFRDIKN-------VAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITY 221
ES+G+FRD+ A++ AR+ Q+F ++ A+ V+ +I I D+ D Y
Sbjct: 512 IESLGNFRDLAYDRTLGYCPARFGARVSQAFSATDAAI-VEVDEILIKRDITTPDG--QY 568
Query: 222 CFSDGIGKISAELA----EIVAKNCGFTIYTPSAFQIRYGGYKGVVAVD--PTSSTKLSL 275
F+DG G +SA+LA +A+ + P A+QIR+ G KG+++VD S LSL
Sbjct: 569 TFTDGSGDMSADLARDIWHRIARKRDRNDF-PRAYQIRHEGSKGMISVDYRLNGSNTLSL 627
Query: 276 RKSMLKYKS-ESTSLDI-LANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDA 333
R SM+K+ + ES +++ A + P +LNR LI +L LG++ VF+ Q E V
Sbjct: 628 RDSMIKFDAPESNEIEVSRAIDQPTPYYLNRFLIMILEGLGVKHEVFQGFQDEAVRGTQQ 687
Query: 334 ILTDPLKAHEALELMSSGENTNV------LKELLMCGYKPDV---EPFLLMMLQTFRASN 384
+ A L+ G + L +L + D +P L + R
Sbjct: 688 AMEHLSSASHLLQAHGLGLTFKIPSTMANLSKLDLDNLARDPLFDQPLRLGVYHVLR--- 744
Query: 385 LLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVV 444
+L+ + RI I N ++G D G L++ +VFV + F +
Sbjct: 745 --DLKYKARIPIPNAWTLVGVADTHGYLKADEVFVCIKHPEKGSFY-------------L 789
Query: 445 EGKVVVAKNPCLHPGDMRVLRAVDVP------SLHHMVDCVVFPAKGKRPHTNECSGSDL 498
EG V+++++P +HPGD+++ A+ P + + + VVF KG RP + G DL
Sbjct: 790 EGPVLISRSPTIHPGDVQLAMAIGGPRQGSPFAREPLPNTVVFSVKGDRPLPSCLGGGDL 849
Query: 499 DGDVYFVC--WDHELIPPLQ-FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVI 555
DGD Y + DH P + + P +Y A +++ T++DV ++ YIV+D +GV+
Sbjct: 850 DGDPYNIIPLRDHPYFTPEKTYEPANYEAAEKQLTEWPCTMKDVADFVMQYIVSDVIGVV 909
Query: 556 CNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAAT---IPSGLRVE---IYPDF 609
++ AD D + CL LAKL + AVD+ KTG IP + + P+
Sbjct: 910 ATNWLIIADQRQDIT-DDDCLVLAKLHSDAVDYPKTGRPVQQDHIPRPRNPKPDWLAPET 968
Query: 610 MEK---QDKTCYESQRVIGKLYRAV 631
+E Q YESQ +GKL RA+
Sbjct: 969 LENVLSQGGRYYESQTALGKLTRAI 993
>gi|393244712|gb|EJD52224.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1061
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 210/761 (27%), Positives = 348/761 (45%), Gaps = 127/761 (16%)
Query: 39 LTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLD 98
L+SP+V ++ + ++VTPS ++ GP+ + SNRV+R Y FLR+ F +ED
Sbjct: 261 LSSPSV------LFSHHLVVTPSGLHLEGPDPNKSNRVLRHYDQYTQFFLRVRFANEDRL 314
Query: 99 KLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMF- 157
+ + + + +YERV L+NGI + +KF+ L +S S + S W
Sbjct: 315 QFRW--------PRDVDGESFVYERVGGILKNGIEVAGRKFQFLGYSLSSLHQYSAWFVT 366
Query: 158 ----------ASRPELTAADIRESMGDFRDIKNVAK-YAARLGQSFGSSREALHVDSSDI 206
R +T IR+ +G+F + + Y AR+ Q+F ++ + + +I
Sbjct: 367 DFYAEVEPGSGHRVRVTPQYIRDHLGNFAKVIDCPSLYGARMAQAFSATDPTITLADGEI 426
Query: 207 EI-IPDVEVEDDGITYCFSDGIGKISAELA------EIVAKNCGFTIYTPSAFQIRYGGY 259
E +PD+ E + SDG G IS EL+ I + +A+QIR GG
Sbjct: 427 EYNVPDIRTETGEL---MSDGCGTISPELSLEMNEQRIHGRTRAEWEKVVNAYQIRVGGA 483
Query: 260 KGVVAVDP-TSSTKLSLRKSMLKYKS-ESTSLDILANSKYQPCFLNRQLITLLSTLGIRD 317
KGVV VDP KL LR SM+K+ + ST +++ ++ +LNR LI L TLG+R
Sbjct: 484 KGVVGVDPRLEGRKLRLRVSMIKFDALHSTDVEVANIARPARMYLNRPLIMTLETLGVRR 543
Query: 318 HVFEKKQREGVAQLDAILTDPLKAHEALE-----------LMSSGENTNVLKEL--LMCG 364
HVFE Q V AHEA + L + VL++L + CG
Sbjct: 544 HVFETLQANVVR----------TAHEAGDSIRRFIPNVGKLGDRFQLRFVLEQLVDIGCG 593
Query: 365 YKPDV---------EPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESG 415
++ D + F+ ++++ L +++ RI + ++G +DE L +
Sbjct: 594 FRDDCSETDGVVLDDSFVRQLVKSVLWETLRDVKYSARIQVPESWTLLGKVDEHDILTNE 653
Query: 416 Q---VFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVP-- 470
+ V+V S ++L EG ++ ++P +HPGD++++ + P
Sbjct: 654 KEVMVYVMDSDYPNGKWL--------------EGPALICRSPVMHPGDVQMVTCISPPQG 699
Query: 471 ---SLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPE 527
S +++C++F AKG R + +G D DGD + + +L P PAPE
Sbjct: 700 SDPSRCPLINCIIFSAKGTRSLASCLAGGDYDGDEFHISQYEQLFIKKSAHP---APAPE 756
Query: 528 -----KVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLS 582
V R TIEDV ++F DYI DS+G++ H++ AD ++ +CL LA++
Sbjct: 757 VVERLYVPERQGTIEDVADFFVDYINRDSVGLLARQHLIIADQNDRGVKAPKCLTLAEMY 816
Query: 583 TIAVDFSKTGVAAT---IPSGLRVEIYPDFMEK------QDKTCYESQRVIGKLYRAVKD 633
+ AVDF KTG+ +P+ L + PD++ Y S + +G LYRAV++
Sbjct: 817 SRAVDFPKTGIPVPPRDMPA-LEFDAKPDWITNEVAAEEAAGAVYRSTKALGHLYRAVEE 875
Query: 634 I-------AP-----PTA---TIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDN 678
AP P A I S + Q D E + + + + T
Sbjct: 876 RQFEDLRDAPAEPQDPGALDDGITSVLAPLVAQFVDIGSETEAHGAVLPPLYSWYTHELQ 935
Query: 679 RLGNL--MDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAII 717
R+ L ++ EAE+L G I+ + K++ L A++
Sbjct: 936 RICELHTLNSKAPLEEAEVLLGTILARSSQPKKRKQLAALM 976
>gi|395333779|gb|EJF66156.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 1220
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 185/648 (28%), Positives = 316/648 (48%), Gaps = 65/648 (10%)
Query: 45 ALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDED-LDKLYST 103
A D G V TP+++ GP +S SNRV+R + D+FLR+ F DED L ++
Sbjct: 413 ARDSGKFKCYHVTFTPTRILLEGPYVSQSNRVIRQFAGYEDHFLRVDFRDEDRLQYRWAR 472
Query: 104 VLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMF-----A 158
+ + T + ERV TL++G +G + FE LA+S S ++++++W
Sbjct: 473 EV---------DGTTLLEERVGGTLKHGFDLGGRHFEFLAYSQSALREHAVWFMNPFDHP 523
Query: 159 SRPELTAADIRESMGDFRDIKNV-AKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDD 217
+R + IR+S+GDF + + +KYAARL Q+F ++ ++ + E + D+ E
Sbjct: 524 TRGYVDGQRIRDSLGDFSKVIDAPSKYAARLAQAFTATDPSVSISHDQCEEMSDMGEE-- 581
Query: 218 GITYCFSDGIGKISAELAEIV-------AKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-S 269
Y F+DG+G IS +L +++ ++ PSA+QIRY GYKG+V +D
Sbjct: 582 --PYLFTDGVGTISPKLGDMIWEALCTAKEDLRRHERKPSAYQIRYLGYKGMVGIDERLE 639
Query: 270 STKLSLRKSMLKYKSESTSLDILANSKY----QPCFLNRQLITLLSTLGIRDHVFEKKQR 325
K+ LR SM K+ + + + +++ +LNR L+ +L G+ VF+K Q
Sbjct: 640 GVKMRLRPSMNKFDALDKDVAPIEIARWFDNPGTSYLNRSLVMILEDRGVDKAVFQKLQD 699
Query: 326 EGVA-------QLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDV------EPF 372
+ V +D +T LK H + LK + M + +V + F
Sbjct: 700 KAVEAVVTASDSIDGTVT-LLKTHNIGLSLGLPYILRGLKAIGMGMKEKEVTTGTLNDTF 758
Query: 373 LLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLES-GQVFVQCSASRRREFLD 431
L ++ +A L +++ RI I + ++G DE E+ G V C + +
Sbjct: 759 LYSLIGYAQAHILRDMKHSARIPIPDSYLLVGLADEGPAYEAEGVQNVFCL--KENQIFA 816
Query: 432 NSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS------LHHMVDCVVFPAKG 485
N E ++G VV++++P +HPGD++ + A+ P ++ + VV P+ G
Sbjct: 817 CVQNETDDEPTYLQGVVVISRSPVVHPGDVQRVYAIGKPPDDKVCFFRNLRNVVVLPSVG 876
Query: 486 KRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVL--ARDMTIEDVEEYF 543
KR + G DLDGD+Y V L+P P Y P K L R T++D+ ++
Sbjct: 877 KRSLASMLGGGDLDGDLYSVIKYSPLLPTEHADPGSYEPVGTKRLPDGRQSTVDDICDFV 936
Query: 544 ADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLR- 602
+Y+ +D LG++ + H++ AD + CL+LA+L + AVD+ K G+ I R
Sbjct: 937 VEYLNSDVLGLLSDRHLIIADQSREGTNDPACLDLAQLCSQAVDYPKNGIPVDIHDSPRL 996
Query: 603 -VEIYPDFM-----EKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSF 644
+ PD+ + +D Y S R +G+L+R++ I P + +SF
Sbjct: 997 LIRFKPDWKMAEDNDPRDTDYYLSPRALGELFRSIT-IPKPKPSAESF 1043
>gi|330794390|ref|XP_003285262.1| hypothetical protein DICPUDRAFT_149105 [Dictyostelium purpureum]
gi|325084804|gb|EGC38224.1| hypothetical protein DICPUDRAFT_149105 [Dictyostelium purpureum]
Length = 2292
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 196/699 (28%), Positives = 323/699 (46%), Gaps = 102/699 (14%)
Query: 47 DDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS 106
DD I V +V VTP+++ P ++ NRV+RS+ ++ FL +F DE+ +
Sbjct: 1074 DDLFIPVKEVFVTPTRIVLVPPRLTSGNRVIRSFGNDPSRFLLYNFTDENFE-------- 1125
Query: 107 PLISSTNEERHTTIYERVLSTLRNG---IVIGDKKFETLAFSNSQVKDNSMWMFASRPEL 163
P + + H I + L+NG I + + + + S SQ K S W + P+
Sbjct: 1126 PFLGLN--KSHPLILDGQSKHLKNGLEIIPLSGEYYRYIGNSQSQSKKYSAWFYLEDPKY 1183
Query: 164 TAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCF 223
D + G I + K + F S+ +++ +D S + I DV D + F
Sbjct: 1184 KIEDAFKWSGIDTSIP-MRKVYRQFCLLFSSTSKSIVIDKSKYKTIDDVY--DSTGAHNF 1240
Query: 224 SDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLS--------- 274
++G G I L + + K + T A+QIR GG KGVV ++ T S L
Sbjct: 1241 TEGCGIIGKYLVDAINKKMNYHPCT-CAYQIRIGGSKGVVVLNDTDSISLGNGKSIPMDP 1299
Query: 275 ----LRKSMLKYKSEST------SLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQ 324
+R+SM K+ + + +L+I++ S C LNRQ I LL G +
Sbjct: 1300 TCIYIRESMTKFMKDPSDDETHRTLEIISVSTTSRCKLNRQAINLLLNAGTEESSI---- 1355
Query: 325 REGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLL--------MM 376
++ LD L + A L+ G + ++L E + P++ + L ++
Sbjct: 1356 ---LSFLDKSLNE-----NAQTLVDIGLSKDLLNE-----FYPNISEYELFNDYYIRTIV 1402
Query: 377 LQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNN 436
L+ F+ + LL ++ + I +++ R ++G D +G L QV+++ + +F DN+
Sbjct: 1403 LKHFK-TKLLRIQDKCHIEVEDSRNVLGVTDFSGKLGPNQVYLEVA-----DFDDNNNII 1456
Query: 437 RSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGS 496
RS V+ G+V V KNPC HPGD+R+L AVD+P LH + + F G+ P+ ECSGS
Sbjct: 1457 RSK---VITGRVAVLKNPCHHPGDIRILEAVDIPLLHGKRNILFFSINGEVPNFKECSGS 1513
Query: 497 DLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTI------EDVEEYFADYIVND 550
DLDGD YF+ +D+ LI D + L + E + + + I
Sbjct: 1514 DLDGDRYFIVYDNVLIN-------DKMKNSDPYLGESVAATVGGEGEGLHDVYLFNIDKT 1566
Query: 551 SLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEI----Y 606
+LG + N H++ +DLE S ++LA I VD KT +P+ + +
Sbjct: 1567 NLGKLSNKHLIISDLEG--VDSEIAIDLAIQCAIEVDSVKTNKHGVLPANAKAAMNKCGI 1624
Query: 607 PDFMEKQ---DKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFE 663
P FM Y S +VIG++Y D A F E+ + D +M VDG++
Sbjct: 1625 PHFMASTTLGTTNIYHSDKVIGQIY----DSASRLMWFGDFLPEIKV---DENMLVDGYK 1677
Query: 664 DYI--TDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCI 700
+YI + Y+ Y R+ NL+ YG +E ++L G +
Sbjct: 1678 NYIDQKNLITYRL-YKTRINNLLRIYGSNSEEDLLLGFV 1715
>gi|353237176|emb|CCA69155.1| related to RNA-directed RNA polymerase (RdRP) [Piriformospora indica
DSM 11827]
Length = 1262
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 183/645 (28%), Positives = 299/645 (46%), Gaps = 89/645 (13%)
Query: 46 LDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVL 105
L G + V +TP+ + GP SN V+R Y + ++FLR++F DE+ ++
Sbjct: 461 LPPGWYWACSVTITPTTMRLEGPHHGQSNGVIRRYVEHSEHFLRVNFTDEERLQIRW--- 517
Query: 106 SPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFAS-----R 160
+ + + + ERV + L+NG IG + F+ LA+SNS ++++SMW A
Sbjct: 518 -----DRDVDGTSFVRERVGNFLKNGFDIGGRHFDFLAYSNSGLREHSMWFVAPFRDRYN 572
Query: 161 PELTAADIRESMGD-----------FRDIKNVAKYAARLGQSFGSSREALHVDSSDIEII 209
++ A IR + D F+ K AK+ ARL Q+F ++ A+ + ++EI
Sbjct: 573 NQVNAEIIRNLIMDIELQKGGDTAEFKLEKQPAKFGARLAQAFSTTEPAIELKEDEVEIK 632
Query: 210 PDVEVED-----DGITYC--FSDGIGKISAELAEIV--AKNCGFTIYTPSAFQIRYGGYK 260
D+ V+ DG F+DG G +S + + + A N G +R GG K
Sbjct: 633 EDIMVDPKFTKPDGPKTATEFTDGYGCMSLAVRDEIWRALNPG----------VRLGGAK 682
Query: 261 GVVAVDPT-SSTKLSLRKSMLKYKSESTSLDILANSKYQ-PCFLNRQLITLLSTLGIRDH 318
GV+ ++PT K+ L +SM+K+KS+ L I + FLNR LI +L LG++
Sbjct: 683 GVLGINPTLEGRKVVLHRSMVKFKSKDYGLHIAFKFDHPLKLFLNRPLIAILEHLGVQID 742
Query: 319 VFEKKQREGVAQLDAILTD----------------PLKAHEALELMSSGENTNV-LKELL 361
F++ +++++ L P L + E T V L+E
Sbjct: 743 WFKRLLVNAQSKMNSTLLSIDEGAAEFFESRRLGLPFDLPRILRSLEKYEVTRVKLQE-- 800
Query: 362 MCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQC 421
Y F L L +A EL+ + RI + G +++G D LE+ +V++ C
Sbjct: 801 ---YDHPFNDFWLRCLDVAKAHIDRELKYKARIPVPFGCSLVGVPDVHMELEADEVYI-C 856
Query: 422 SASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSL-----HHMV 476
R RE G V + ++P +HPGD++ +A P H +V
Sbjct: 857 KQERDRE---------PKWFPEKPGYVYITRSPSIHPGDVQKFKAKHPPRGSVYYNHPVV 907
Query: 477 DCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTI 536
+ VVF KG RP + G D+DGD++ + + PP Y L R TI
Sbjct: 908 NAVVFSCKGARPPASMLGGGDVDGDLFQIIPEKPDFKLEVGPPASYEVEDTLTLERPTTI 967
Query: 537 EDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAAT 596
ED+ ++ +YI +D +G++ H++ AD +CL+LA+L + AVDF+K+G +
Sbjct: 968 EDIADFVVEYINSDKMGLVAIQHLILADQSNSGLHDPKCLKLAELHSKAVDFAKSGKPVS 1027
Query: 597 IPSGLR--VEIYPDFMEKQ----DKTC-YESQRVIGKLYRAVKDI 634
+ PDF K+ D+T YES + +G LYR +K I
Sbjct: 1028 FQDLPKRYFPYTPDFQHKETRFDDQTSYYESPKALGVLYRMIKHI 1072
>gi|395332591|gb|EJF64970.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 1236
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 193/686 (28%), Positives = 322/686 (46%), Gaps = 84/686 (12%)
Query: 25 LEEQYRKYVL-SRRFLTSPAVALDD-----GLIYVNKVLVTPSKVYFSGPEISLSNRVVR 78
+E+ +RK + RR + + V DD G + ++TP++V GP + SNRV+R
Sbjct: 387 VEQCFRKALGDERRDVHASIVDPDDSPRTRGSVQCAHAIITPTRVLLEGPYDTQSNRVIR 446
Query: 79 SYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKK 138
Y D FLR+ F +E+ + P+ + + I +R L+ G+ I +
Sbjct: 447 KYYAYRDYFLRVEFREEN----RMSFRWPIEVNGR----SLIQQRFGKFLKQGLEIAGRT 498
Query: 139 FETLAFSNSQVKDNSMWMFA--SRPE---LTAADIRESMGDF---RDIKNVAKYAARLGQ 190
F L +S S ++++++W A + PE +T IR +GDF + I+ +KYAAR+ Q
Sbjct: 499 FRFLGYSTSGLREHTVWFMADFNHPEEGPVTPEKIRNDLGDFTFKKSIRQPSKYAARIAQ 558
Query: 191 SFGSSREALHVDSSDIE-IIPDVEVEDDGITYCFSDGIGKISAELAEIV-------AKNC 242
+F + + + E +PD+ + Y F+DG G IS EL + + + +
Sbjct: 559 AFSGTDPSYKITIGQWEEGVPDLGTD----PYEFTDGQGTISVELRDRIWDVLCEASPDK 614
Query: 243 GFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKYKSE---STSLDIL-ANSKY 297
I PSAFQIR+ G KG+V VD KL LR SM K+ E ++I A K
Sbjct: 615 RKLILKPSAFQIRFLGCKGIVVVDEQLEGIKLRLRDSMKKFHVEHMREAEIEIAKAFIKP 674
Query: 298 QPCFLNRQLITLLSTLGI-RDHVF---EKKQREGVAQLDAILTDPLKAHEALELMSSGEN 353
P L R LI +L GI + H+ EK +++ V D I + L+ +
Sbjct: 675 GPARLCRPLIAVLEDRGIHKQHLLALQEKAKKKVVEARDTI-------EQTAGLLRDHDL 727
Query: 354 TNV------LKELLMCGY-----KPDVE-----PFLLMMLQTFRASNLLELRTRTRIFIQ 397
NV L+ L G KP F+ ++ + L E++ RI I+
Sbjct: 728 GNVYGLRYILEHLRKAGVDTGKKKPRARHIMDNEFIARLIDYAQTHILSEIKHDARIPIE 787
Query: 398 NGRAMMGCLDE-TGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCL 456
++GC DE + +G + + E S E ++G V ++++P +
Sbjct: 788 EAHQLVGCADEGPAYIAAGHDPEKVICLKEGEIFACVQQPDSDEPIYIQGLVSISRSPHI 847
Query: 457 HPGDMRVLRAVDVPS--------LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWD 508
HPGD++ +RA+ P ++ + VV P+ G R + +G D+DGD + V D
Sbjct: 848 HPGDVQRVRAIGKPPDDPDKVCFFRNLRNVVVMPSVGDRSLASMLAGGDVDGDEFLVIKD 907
Query: 509 HELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPD 568
L+P P Y + L RD T++D+ ++F +Y+ +D +G++ + H+V AD
Sbjct: 908 MTLLPTTLVEPASYVGVKPEPLDRDSTVDDICDFFMEYMQSDVVGLVADLHLVIADQSKY 967
Query: 569 KARSNQCLELAKLSTIAVDFSKTGVAATIPSGLR--VEIYPDFMEKQD-----KTCYESQ 621
C+ LA+L + AVD+ K GV + + R + PD+ + +D YES
Sbjct: 968 GTFDEDCMRLAQLCSQAVDYPKNGVPVNVENMPRKLIRAKPDWKKPEDTDYRPADYYEST 1027
Query: 622 RVIGKLYR--AVKDIAPPTATIKSFT 645
R +G+L+R VK I PP+++ + T
Sbjct: 1028 RALGELFRNIVVKRIDPPSSSFPNGT 1053
>gi|393235346|gb|EJD42902.1| RNA-directed RNA polymerase [Auricularia delicata TFB-10046 SS5]
Length = 1654
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 175/548 (31%), Positives = 270/548 (49%), Gaps = 65/548 (11%)
Query: 63 VYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYE 122
++ +GP SNR++R+ D+ F+ +SF + + + Y+TV +
Sbjct: 41 LFRTGP--FTSNRILRN--DDPSKFISVSFREFRMPE-YTTV-----------------D 78
Query: 123 RVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM--FASRPELTAADIRESMGDFRDIKN 180
+ L G+ + D+++ S SQ+++ ++ AS EL A S GDF I N
Sbjct: 79 YIKRFLAAGLFLDDRQYRFYHHSPSQLRERGCFLREAASDEELDARIY--SYGDFSRINN 136
Query: 181 VAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAK 240
VAK A R+G F + ++D E I D+ V ++ FSDG G +S LA +++
Sbjct: 137 VAKRAKRIGLLFSGASIDYNLDPQFTEDIDDIIVGNE----LFSDGCGLVSRRLAVALSR 192
Query: 241 NCGFTI----YTPSAFQIRYGGYKGVVAVDP----TSSTKLSLRKSMLKYKS--ESTSLD 290
YTPS FQIRY GYKGV+ + P + R+SM K+ + + T
Sbjct: 193 QKKIVFRGARYTPSVFQIRYRGYKGVLMLHPELDRSHGPLAQFRRSMKKFNATLDDTFTV 252
Query: 291 ILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSS 350
+ ++ Y LN +I L+S+LGI + KQ E D +L A++L+S
Sbjct: 253 VGYSTPYAFGRLNNDVIVLISSLGITNETLLAKQAE---YFDWLLRAVSDVSCAVDLLSC 309
Query: 351 GENTNVLKELLMCGYKPD-VEPFLLMML----QTFRASNLLELRTRTRIFIQNGRAMMGC 405
+ + + +L+ G D V+ L ++ ++FR N R R+R+ I+ R + G
Sbjct: 310 LGDFAMAERVLLDGLDADHVQKALAGIVSREVKSFRKDNG---RLRSRMIIRKSRLLFGV 366
Query: 406 LDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLR 465
D G L G+V V+ SA R+ C+ V+V KNPCLHPGD+ L
Sbjct: 367 CDPFGVLREGEVHVRVSAGRQPATTLTHCD------------VLVVKNPCLHPGDVLKLH 414
Query: 466 AVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPA 525
AV+ P L H+VDCVVFP+ GKR + SGSDLDGD +FVCWD ++IP P Y
Sbjct: 415 AVENPRLAHLVDCVVFPSVGKRAPASMTSGSDLDGDQFFVCWDSDIIPSKTTDPYLYPKG 474
Query: 526 PEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIA 585
E++ +R ++ +D+ +FA Y S+ + H A A +CLEL+ L ++A
Sbjct: 475 KEQI-SRSISRQDLAAHFAAY-SGASIAKVAGLHSKWARHSQQGAMCTECLELSALHSLA 532
Query: 586 VDFSKTGV 593
VD K V
Sbjct: 533 VDGGKIKV 540
>gi|260793153|ref|XP_002591577.1| hypothetical protein BRAFLDRAFT_105111 [Branchiostoma floridae]
gi|229276785|gb|EEN47588.1| hypothetical protein BRAFLDRAFT_105111 [Branchiostoma floridae]
Length = 3516
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 184/602 (30%), Positives = 284/602 (47%), Gaps = 72/602 (11%)
Query: 124 VLSTLRNG--IVIGDKKFETLAF---SNSQVKDNSMWMFASRPELTAADIRESMGDFRDI 178
V + LR+G + +G + F S SQ+++ + ++ + G+F I
Sbjct: 108 VSAVLRSGFKVTVGKGQRRHYVFFGHSASQLRERTCILYDQGVLGPWERLVNGFGEFEAI 167
Query: 179 KNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIV 238
KN +K AAR+G ++ + L +D +I+ D+E DG T F+DG G IS A +
Sbjct: 168 KNPSKRAARIGLLLSTATKCLELDEKEIDHTSDIE--RDGFT--FTDGCGFISVACARKI 223
Query: 239 AKNCGFTIY-------TPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDI 291
++ + PS Q R G KGVV DP+ + +R S K+K + +
Sbjct: 224 MQDKDISERYRHQDPPVPSVIQFRMKGCKGVVMTDPSLPNGVCIRPSQEKFKWKLPPPHV 283
Query: 292 LA------NSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL 345
+ Y LN+Q I +LS LGI+D VF KQ +LD + TD A
Sbjct: 284 FGVCDDGISQPYAFGQLNKQYIMMLSALGIKDEVFLSKQETYFKELDCLETD---KEVAF 340
Query: 346 ELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRA-------SNLLE--LRTRT---- 392
+ + + + L PD E L +L+ FR+ +N L L T+
Sbjct: 341 RHLCARGYIGLAERLFSREGGPDNE--TLEILRGFRSRVRRPPKANKLHKLLNTKPEPAR 398
Query: 393 --RIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVV 450
+I I+ R + G D +GTLE GQ F Q + + + ++ KV V
Sbjct: 399 ALKIPIEKSRNVFGVCDPSGTLEPGQCFFQATVRGKMQVFADT-------------KVAV 445
Query: 451 AKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHE 510
K PC HPGD RVL+ V+V H+VDCVVFP +G+RPH +E +GSDLDGD +FVCWD +
Sbjct: 446 VKCPCYHPGDFRVLQCVNVEDCRHLVDCVVFPVQGERPHADEIAGSDLDGDKFFVCWDPD 505
Query: 511 LIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKA 570
L+P + P+ Y P E ++I D+ FA+Y +S V + + +
Sbjct: 506 LVPECEEAPLSY-PGGEAAKKERVSIGDLISVFANY---NSRTVSRLNELFNRWADVKGV 561
Query: 571 RSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVI--GKLY 628
S++C ++AKL + AVD +KTG IP R+ PD EK+ Y Q+++ LY
Sbjct: 562 TSSECRKIAKLFSTAVDTAKTGKGVDIPP--RLLKPPDAQEKR----YVWQKMLERANLY 615
Query: 629 RAVKDIAPPTATIKSFTK-EVAMQSYDTDMEVDGFEDYITDAFKYK-TEYDNRLGNLMDY 686
A A T++ F + ++ + D+ V ++ + F YK E + RL +L Y
Sbjct: 616 LADSVAADSDLTVRVFEEADITDLLNNKDINVSEYQLF---RFLYKWCESNGRLQDLQRY 672
Query: 687 YG 688
G
Sbjct: 673 VG 674
>gi|342319755|gb|EGU11702.1| RNA-directed RNA polymerase 2 [Rhodotorula glutinis ATCC 204091]
Length = 1904
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 180/609 (29%), Positives = 282/609 (46%), Gaps = 59/609 (9%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
V +V T ++ GP + +N +VR+Y + F+ ++ ED SS
Sbjct: 1106 VRQVTFTATRALLFGPYLGDTNSIVRAYA-RPELFVSVAVRHED------------GSSL 1152
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDN-----SMWMFASRPELTAAD 167
+ + I R R+G +G + + LA+S+S +K + S + +T
Sbjct: 1153 RDRDDSLIASRFSPLFRDGFELGGRSWRFLAWSSSGLKSSSCFFMSPFRLDDETLITPTF 1212
Query: 168 IRESMGDFRDIKNV---AKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFS 224
I ++GDF + AKY AR+ Q+F SS+ +L + + I D+ D CFS
Sbjct: 1213 IHRTIGDFTGSETALIPAKYMARIAQAFSSSKPSLTLRPDQMLSIEDITAPDGS---CFS 1269
Query: 225 DGIGKISAELAEIVAKNCGFTI----YTPSAFQIRYGGYKGVVAVDPTSSTKL-SLRKSM 279
DG+G IS LA V + G + P+ FQ R GG KG + VDPT K+ +LR S
Sbjct: 1270 DGVGLISPSLANDVVEKLGIKLGKEERPPTCFQFRLGGAKGTLQVDPTLEGKVVALRPSQ 1329
Query: 280 LKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLD---AILT 336
+K++S TSL+I + P +LNR LITLL LGI VF K Q + A++ A L
Sbjct: 1330 VKFRSTLTSLEIAGTFEAGPGYLNRPLITLLENLGIPADVFLKLQAKATAKIRKSRASLP 1389
Query: 337 DPLKAHEALELMSSGENTNVLKELLMCGYKPDV---EPFLLMMLQTFRASNLLELRTRTR 393
+K L S + L L D PF+ L L +++ R
Sbjct: 1390 SAVKLPRDWSLASGTRFVSALNLLAKDQATRDAAFANPFVARCLDASVVHALRDIKYLAR 1449
Query: 394 IFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKN 453
I + ++G +D G L +++ + S G ++G + ++++
Sbjct: 1450 IPLPGCYNLVGVVDVDGCLAQDEIYARIS-------------RPDGSTEYLQGTIAISRS 1496
Query: 454 PCLHPGDMRVLRAVD-VPS-----LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCW 507
P HPGD R++RAV +P + + +CVVFP G R + +G DLDGDVY +
Sbjct: 1497 PTNHPGDCRLVRAVGKLPKGAGERIRGLTNCVVFPVHGPRSLPSMLAGGDLDGDVYLLLT 1556
Query: 508 DHE-LIP-PLQFP-PMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHAD 564
+ L+P P + P Y AP L R++++ED E+F YI D G++ ++ AD
Sbjct: 1557 EASGLVPSPDRIAEPAAYDAAPTVKLDREVSVEDGGEFFFKYITQDRTGLVATRQLLLAD 1616
Query: 565 LEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRV--EIYPDFMEKQDKTCYESQR 622
+ CL+LA+L + VD +K+G + RV PDF+ Y S +
Sbjct: 1617 SHAEGLFHPDCLKLAQLHSNCVDAAKSGSFVQQHAVPRVTQRGLPDFLTNDAPDSYRSSK 1676
Query: 623 VIGKLYRAV 631
+G LYRA+
Sbjct: 1677 ALGHLYRAI 1685
>gi|336367253|gb|EGN95598.1| hypothetical protein SERLA73DRAFT_162413 [Serpula lacrymans var.
lacrymans S7.3]
gi|336379975|gb|EGO21129.1| hypothetical protein SERLADRAFT_417518 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1199
Score = 216 bits (549), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 193/650 (29%), Positives = 314/650 (48%), Gaps = 72/650 (11%)
Query: 30 RKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLR 89
R L + TSP G + + V TP+++ GP I SNRV+R+Y D+F+R
Sbjct: 393 RHSKLKSKLRTSP-----QGRFFCHHVTFTPTRMLLEGPYIIQSNRVIRNYEGYEDHFIR 447
Query: 90 LSFVDED-LDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQ 148
+ F DED L+ ++ L L + RV L+NG + + FE LA+S+S
Sbjct: 448 VDFRDEDRLNYRWNRELDAL---------AFLEPRVGGILKNGFELAGRDFEFLAYSSSA 498
Query: 149 VKDNSMWMFA--SRPE---LTAADIRESMGDFRD-IKNVAKYAARLGQSFGSSREALHVD 202
++++++W S P +T+ IR +GDF I + +KYAAR+ Q+F ++ ++ +
Sbjct: 499 LREHAVWFVNPFSHPTEGWVTSESIRSGLGDFSGVIFHPSKYAARMAQAFSATDPSVKIH 558
Query: 203 SSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIV-------AKNCGFTIYTPSAFQIR 255
S IPD+ E T CF+DG+G IS EL +++ ++ G PSA+QIR
Sbjct: 559 KSQWREIPDLGDE----TTCFTDGVGTISRELGDMIWGALCEARRDHGEHTIKPSAYQIR 614
Query: 256 YGGYKGVVAVDPT-SSTKLSLRKSMLKY---KSESTSLDILANSKYQPCF--LNRQLITL 309
+ GYKG+VA+D + ++ LR SM K+ ++E ++I A + +P LNR L+ +
Sbjct: 615 FLGYKGMVAIDAQLTGVQMCLRPSMNKFLGKETEYAEIEI-ARAFERPNLPHLNRPLVMV 673
Query: 310 LSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGEN---TNVLKELLMCGYK 366
L G + F K Q E +A+ + LE + G N + +L++L G +
Sbjct: 674 LEDRGAKRDSFVKLQDEVIAETRMANDSIERFRSLLEEHNLGHNFRLSPILQQLNALGLE 733
Query: 367 PDVE--------PFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDE-TGTLESGQV 417
+ PFL L ++ RI I ++G DE + +G+
Sbjct: 734 LKADQTKEAMDSPFLAQTRSCAINHVLRSVKHEARIQIPKSYMLVGVADEGPAYVNAGRD 793
Query: 418 FVQCSASRRREFLDNSCNNRSGELGVV--EGKVVVAKNPCLHPGDMRVLRAVDVPS---- 471
V C E +C + G++ + EG V++++P +HPGD++ + A+ P
Sbjct: 794 NVFCLP----EGKIYACVQKPGDMEPIWLEGLCVISRSPVIHPGDVQRVYAIGKPPANKL 849
Query: 472 --LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKV 529
H+ + VV P+ G R + G DLDGD+Y V + P +Y
Sbjct: 850 CLFSHLKNVVVLPSVGARSLASCLGGGDLDGDLYEVIQHSPFLVTEHHDPAEYPAGSIFT 909
Query: 530 LARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFS 589
L R TIEDV ++ +YI +D +G++ + H+V AD CL+L+ L + AVD+
Sbjct: 910 LDRPSTIEDVCDFVVEYIHSDVVGLVSDKHIVIADQSKHGTLDQNCLKLSALHSQAVDYP 969
Query: 590 KTGVAATI---PSGLRVEIYPDF----MEKQDKT-CYESQRVIGKLYRAV 631
K G+ I P L + PD+ ++ KT YES R +G LYR +
Sbjct: 970 KNGIKVDISFLPRSL-IPYKPDWHAAEVDSPRKTDYYESSRALGYLYRNI 1018
>gi|389741441|gb|EIM82629.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1527
Score = 215 bits (548), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 160/506 (31%), Positives = 242/506 (47%), Gaps = 49/506 (9%)
Query: 125 LSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKY 184
L + G+ + ++ SNSQ++ ++ + + + + GDF I NVAK
Sbjct: 41 LRFFQAGLFLNGVQYRFYGHSNSQLRSGGCFLRRANSDEELDQVVYAKGDFGKIMNVAKR 100
Query: 185 AARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGF 244
A R+G F + +D I D+++ D+ FSDG G IS L+ ++K G
Sbjct: 101 AKRIGLLFSGAEVDYMLDPQYTGDIDDLKIGDE----VFSDGCGLISRWLSVQISKKKGI 156
Query: 245 T----IYTPSAFQIRYGGYKGVVAVDPTSST----KLSLRKSMLKYKSESTSLDILANSK 296
YTP FQIRY GYKGV + P + RKS K+ + + + +
Sbjct: 157 VHNRRRYTPCVFQIRYRGYKGVQMLHPPLDAAKIHQAEFRKSQKKFTATDDMIFSIVDYS 216
Query: 297 YQPCF--LNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENT 354
F LN ++ LLS+LG+ + F Q+E + +DP+ A EL S+
Sbjct: 217 KPHTFGRLNNEITILLSSLGVTNDDFVALQQEYFDWVQRASSDPV---HAFELFSTLGKH 273
Query: 355 NVLKELLMCGYKPDVEPFLLMMLQTFRASNLLEL-------RTRTRIFIQNGRAMMGCLD 407
++ + +L+ G P ++ +++ +A+ + + R R+ I+ R + G D
Sbjct: 274 DIAERVLLDGLD---SPTIVKQIRSAQAAEIQAFHKEGDATKERVRMLIRKSRRLFGVCD 330
Query: 408 ETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAV 467
G L+ GQV V+ + SR +G + V+V +NPCLHPGD+ LRAV
Sbjct: 331 PFGVLKEGQVHVRITVSR------------AGASTINHLDVIVVRNPCLHPGDILKLRAV 378
Query: 468 DVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPE 527
D P L H+VDCVVFP+ GKR + SG DLDGD YFVCWD L+P + YT P
Sbjct: 379 DHPQLSHLVDCVVFPSVGKRAAPSMSSGGDLDGDEYFVCWDPRLVP--KKISESYTYPPN 436
Query: 528 KVLARD-MTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAV 586
K ++ +T +D+ +FA Y N + H A PD A S +C EL L + AV
Sbjct: 437 KEFTQNKITRQDLARHFASY-NNSGMAKAAKYHNKWARYPPDGALSKECQELNALYSQAV 495
Query: 587 DFSKTGVAATIPSGLR--VEIYPDFM 610
D G +IP+ L E PDF+
Sbjct: 496 D----GARVSIPARLTEVPESRPDFI 517
>gi|392597024|gb|EIW86346.1| RdRP-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 1218
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 201/722 (27%), Positives = 328/722 (45%), Gaps = 101/722 (13%)
Query: 56 VLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDED---LDKLYSTVLSPLISST 112
++ TP+ GP SN V+R + + FLR+SF DE+ L + + +S L+ S
Sbjct: 430 LIFTPTTQILEGPLPDQSNSVLRRFGHH-ECFLRVSFQDENCAPLRRDFEWSISELMKS- 487
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA----SRPE-LTAAD 167
R G + +KFE L +S S ++++S+W A R E L AA
Sbjct: 488 ----------RFRPKFLKGHRVAGRKFEFLGYSMSGLREHSVWFVAPFQNDRGEWLNAAA 537
Query: 168 IRESMGDFRDI-KNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDG 226
IR +GDF ++ K A+ AR Q+F ++ ++ + +I + D+ +DG
Sbjct: 538 IRNLLGDFSELLKRPARLGARWSQAFSTTDPSVVLRQEEIFRVDDIISPRS--KKVMTDG 595
Query: 227 IGKISAELAEIV-------AKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKL-SLRKS 278
IS +LA + + PSAFQ R GG KGVV +P K+ LR S
Sbjct: 596 CSSISPDLARNIWEKLRTDRRQLSSLKNPPSAFQFRLGGAKGVVVQNPDLEGKVVCLRPS 655
Query: 279 MLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFE--KKQREGVAQLDAILT 336
LK++ + D+ ++S+ +P +LNR LI LL + V K Q + + + + +
Sbjct: 656 QLKFEGSELTFDVQSHSRSRPMYLNRPLIALLEHVAASGLVTRVLKLQHDDIMEAQGVRS 715
Query: 337 DPLKAHEALEL---------------MSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFR 381
A + LE+ +SS N +V G + ++ ++ ++
Sbjct: 716 SFKDASKMLEVHGLGAPFRLGSLFHNLSSELNLHVWTSETPRGLRNEI---IIDAMRCIS 772
Query: 382 ASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGEL 441
L EL+ R I + +MG DE L G++F R++ R+G
Sbjct: 773 THALRELKYRAHIRVPGSYTLMGVSDEWDCLNPGEIFATV-----RDY-------RTGVY 820
Query: 442 GVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGD 501
+EG V V ++P +HPGD++V++AV P L H+ + +VF +G RP N G DLDGD
Sbjct: 821 HAIEGPVAVTRSPQIHPGDIQVVKAVRRPELEHLTNVIVFSTRGDRPLPNYLGGGDLDGD 880
Query: 502 VYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVV 561
+ + D L P P Y P K +EDV ++ DY +D +G+I AH+
Sbjct: 881 DFNLILDENLFPTYNRIPGSYVSLPIKETPHICGVEDVVDFIFDYFESDLVGLISIAHLR 940
Query: 562 HADL-EPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRV--EIYPDFMEK------ 612
ADL +PD S +C+ LA+L++ AVDF KTG R I PDF+ K
Sbjct: 941 FADLGDPD---SQECMTLAELASQAVDFPKTGTPVQFEDLPRFPDTIKPDFLAKEGEDPH 997
Query: 613 QDKTCYESQRVIGKLYRAVK--DIAPP----------TATIKSFTKEVAMQSY------- 653
Q+ Y+S +++G+L+R + D P T+ + +F + + ++ Y
Sbjct: 998 QNSRFYKSPKLLGRLFRRIPLDDWMPEAGKSRSPFDITSILTAFDR-IPLEDYGLPPLGR 1056
Query: 654 ---DTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKK 710
DT E+ + D + + N D+ +EAE++SG I+ K+
Sbjct: 1057 PREDTLQEMQWLLEAYCDELQIIAQAHTVSRNQEDFI---SEAELVSGTILANWSDHRKR 1113
Query: 711 RD 712
R+
Sbjct: 1114 RE 1115
>gi|409079686|gb|EKM80047.1| hypothetical protein AGABI1DRAFT_72859 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1258
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 213/785 (27%), Positives = 356/785 (45%), Gaps = 113/785 (14%)
Query: 3 YIEHALET---LFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVT 59
Y++H L + R P E+ RKYV P LD + V T
Sbjct: 381 YVDHFLRKYGEVLQDRGPRVSPTDCFEQVKRKYV-------PPKATLD--IFRCRHVTFT 431
Query: 60 PSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEE--RH 117
P+++ GP + SNR++R Y + F+R+ F DED L N E
Sbjct: 432 PTRMLMEGPYATQSNRIIRQYSGYEEFFIRVDFRDEDR----------LQYRWNREVDGA 481
Query: 118 TTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFAS----RPELTAAD---IRE 170
+ + ERV + L++G I ++FE LA+S+S ++++++W P+ D IRE
Sbjct: 482 SFVRERVGTILKDGFTIAGRQFEFLAYSSSALREHAVWFMCPFEHHDPKYGRVDSMKIRE 541
Query: 171 SMGDFRD---IKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVED--DGIT--YCF 223
+G+F+ +K +KYAARL Q+F ++ ++ + + E I D++ + DG Y F
Sbjct: 542 QIGNFKGTDLMKQPSKYAARLAQAFTATEASVSIKRDEWEEIEDIKPPNFEDGKPNPYLF 601
Query: 224 SDGIGKISAELAE-IVAKNC------GFTIYTPSAFQIRYGGYKGVVAVDPT-----SST 271
+DG+G IS L + I A+ C G PSA+QIR+ GYKGVVAVD +
Sbjct: 602 TDGVGSISKSLGDKIWAELCSNRRDHGENSIQPSAYQIRFLGYKGVVAVDEQLDKTGAGK 661
Query: 272 KLSLRKSMLKY---KSESTSLDILANSKYQP--CFLNRQLITLLSTLGIRDHVFEKKQRE 326
+ LR SM K+ + ++I A + P C+LNR L+ LL LG+ F Q +
Sbjct: 662 HMRLRNSMRKFLVVNDDVAPIEI-AQAFAHPNRCYLNRPLVMLLEDLGVNVDAFLTLQDK 720
Query: 327 GVAQLDAI---LTDPLKAHEALELMSSGENTNVLKELLMCGYK-----PDV----EPFLL 374
VA+ I + L L S + ++K+L G + PD PFL
Sbjct: 721 EVAKARTIHDSIDRFLSVISEHGLGRSFRFSYLVKQLQGLGLEINSKDPDKLNVDTPFLK 780
Query: 375 MMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDE-TGTLESGQVFVQCSASRRREFLDNS 433
+ + + +++ RI + + ++G DE + +G V C F+ +
Sbjct: 781 QVREVAMMDVMRDIKHSARILVPDSHLLVGIADEGPAYVSAGFENVYCLPP---GFI-YA 836
Query: 434 CNNRS--GELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS------LHHMVDCVVFPAKG 485
C S G+ +EG +V ++P H GD++ +RA+ P H+ + +V ++G
Sbjct: 837 CVQESPDGKAEWLEGHCLVTRSPVAHIGDVQRVRAIGKPPQGKLCLFSHIKNALVMSSQG 896
Query: 486 KRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFAD 545
R + G D+DGD++ V L+P PM+Y K + + T++D+ ++ +
Sbjct: 897 NRSLASCLGGGDVDGDLFQVIQYEPLLPMTYELPMEYESVGTKAITTECTVDDICDFVVE 956
Query: 546 YIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAA-----TIPSG 600
YI +D LG++ + ++ AD C+ LA+L + AVD+ K G+ +P
Sbjct: 957 YINSDVLGLLSDRLLMIADQSKLGMNDKDCIRLAELCSQAVDYPKNGIPVDLNKEKLPHT 1016
Query: 601 LRVEIYPDF-----MEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAM-QSYD 654
L + PD+ + ++ Y S R +G+LYR + P +K +K + +
Sbjct: 1017 L-IRCKPDWHAAEVVSPRETDYYRSTRALGELYRNISLTEP--EPMKPVSKNFELFRDPI 1073
Query: 655 TDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYY-----------------GIK-TEAEIL 696
+ + D E YI D TE D L ++ Y G K EAE++
Sbjct: 1074 SQVLSDRVEFYIGDLVLPTTEVDQTLEDIYSRYLEELNYIRFTHTLSNTPGAKLLEAEVV 1133
Query: 697 SGCIM 701
+G I+
Sbjct: 1134 AGTIL 1138
>gi|353236430|emb|CCA68425.1| related to NAM7-nonsense-mediated mRNA decay protein (RdRP)
[Piriformospora indica DSM 11827]
Length = 678
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 159/493 (32%), Positives = 248/493 (50%), Gaps = 50/493 (10%)
Query: 128 LRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRE---SMGDFRDIKNVAKY 184
L +G+ + KK+ SNSQ++ +S ++ R E ADI S+GDF+ I + AK
Sbjct: 97 LTSGVTLNGKKYFFYGHSNSQLRSHSCFLRQGRSE---ADIHSRILSLGDFKSIDSPAKL 153
Query: 185 AARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGF 244
A R+G F ++ + +D S IPD+ V D FSDG G IS A ++AK
Sbjct: 154 AKRIGLLFSAAEQDSVLDPSHTRDIPDLMVGDT----LFSDGCGLISQAYARLLAKKKQA 209
Query: 245 TI----YTPSAFQIRYGGYKGVVAVDPTSSTK----LSLRKSMLKYKS-ESTSLDILANS 295
Y PS FQIRY GYKGV+ + P ++ + RKSM K+ + +L I+ S
Sbjct: 210 IFRQVKYVPSVFQIRYKGYKGVLMLHPPLDSQNDGYVHFRKSMRKFTGVPNDTLSIIKYS 269
Query: 296 -KYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENT 354
Y LN +++ LLS+LGI D V K R ++ L + T+ AL+ +SS +
Sbjct: 270 VPYTYGRLNNEIVALLSSLGISDEVLLGKLRAYMSWLRTVCTN---LSSALDFVSSIDKH 326
Query: 355 NVLKELLM-----CGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDET 409
++++ +L+ G + +++ L ++ F+ ++ + + R+ + N R + G D
Sbjct: 327 SLVERILLEGIDSAGIQRELKKALKQEIEKFKKVDIE--KKKLRVLVNNSRRLFGVCDPF 384
Query: 410 GTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDV 469
L G+VFV+ + +SC+ V++ +NPC+HPGD LRAVD
Sbjct: 385 QILREGEVFVRVTMPHAGPRTIHSCS------------VLIFRNPCMHPGDCLKLRAVDK 432
Query: 470 PSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKV 529
P L H+VDCVVF +KG+ + SG DLD Y + WD +LIP F Y P EK
Sbjct: 433 PELRHLVDCVVFASKGRHAAPSLSSGGDLDE--YTIIWDKDLIPSRVFEHYLYPPVKEKK 490
Query: 530 LARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFS 589
+ +T D+ +FA+Y + S+G + P+ A+S +C +L L + VD
Sbjct: 491 KSV-ITRRDLAAHFANY-NSISMGTTARLYWQWVRFHPEGAKSQECQDLNALYSQCVD-- 546
Query: 590 KTGVAATIPSGLR 602
G + IP LR
Sbjct: 547 --GGSIKIPERLR 557
>gi|403417878|emb|CCM04578.1| predicted protein [Fibroporia radiculosa]
Length = 1258
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 210/708 (29%), Positives = 318/708 (44%), Gaps = 111/708 (15%)
Query: 28 QYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNF 87
+Y ++ R ++ D + + V TP+++ GP SN VVR Y + D F
Sbjct: 421 RYLARIIGERTMSLGQQRSDKNIFTCHHVTFTPTRMILEGPSRLQSNSVVREYWENRDRF 480
Query: 88 LRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNS 147
+R+ FVDE+ S + + + +RV + L+ G I + FE L +SNS
Sbjct: 481 IRVDFVDENR--------SHFRLDQEVDGASFLQDRVGTILKGGFQIASRVFELLGYSNS 532
Query: 148 QVKDNSMWMFAS-------------RPELTAADIRESMGDFRDIKNVAKYAARLGQSFGS 194
+ D+ W R +TA +IR +GD +I AKYAAR+GQ+F S
Sbjct: 533 SLGDHVFWFVNPFERVSRNANGQEVREFITAEEIRRRLGDLSEIALPAKYAARIGQAFTS 592
Query: 195 SREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNC--------GFTI 246
+ ++ V + E I ++ + D DG+G+IS +LA + + + +
Sbjct: 593 TYFSVQVVEDEWEEIEEILEDRDN-PKSHVDGLGRISQDLANAIWEGMCEEEPERRAYGV 651
Query: 247 YTPSAFQIRYGGYKGVVAVD-PTSSTKLSLRKSMLKYKSES-----------------TS 288
PSAFQIR+ GYKGVVAVD KL LR M K+K S
Sbjct: 652 -KPSAFQIRFIGYKGVVAVDRQLKGRKLCLRPEMRKFKPHRCDGCRAKLFCAHLNNPIQS 710
Query: 289 LDILANSKYQP--CFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALE 346
L I A + + P +L R +T+L +RD VFE Q E K E L+
Sbjct: 711 LHI-AEAFHGPRRAYLTRDPVTILEDREVRDEVFENLQDEAKRTTYMARDSSEKYLELLQ 769
Query: 347 LMSSGENTNV---LKELLM----CGYKPDVE-----PFLLMMLQTFRASNLLELRTRTRI 394
G + L+ LL CG + E PF L + + L +L+TR RI
Sbjct: 770 SHHLGFQYRLPFLLQRLLDIGLDCGSQILAENVLNDPFFLGLREYGIQHVLRDLKTRARI 829
Query: 395 FIQNGRAMMGCLDETGT----------LESGQVF--VQCSASRRREFLDNSCNNRSGELG 442
+ N ++G DE L++GQ+F VQ S + +L C
Sbjct: 830 PVPNSYLLVGVADEGPAYTKQGHSVYQLKNGQIFACVQESPDAKPIWLKGLC-------- 881
Query: 443 VVEGKVVVAKNPCLHPGDMRVLRAV---DVPS-----LHHMVDCVVFPAKGKRPHTNECS 494
+ ++P +HPGD++ + A+ DVP HM + VV P G R +
Sbjct: 882 ------FITRSPTVHPGDVQRVTAIGKPDVPDGQICLFEHMKNVVVLPTVGCRSLASCLG 935
Query: 495 GSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGV 554
G DLDGD+Y+V +L+P L PP Y EK R T +DV ++ +Y+ +D LG+
Sbjct: 936 GGDLDGDLYYVFHYSQLLPVLHVPPAAY--PDEKPPPRQFTFDDVCDFIVEYMHSDVLGL 993
Query: 555 ICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAA---TIPSGLRVEIYPDFME 611
+ +V AD + + +C+ELA+L + AVD+ KTG A T P L + PD+
Sbjct: 994 LSVRRLVIADQSQEGSLDKRCIELARLCSDAVDYPKTGRAVNSRTAPKKL-LPYSPDWHA 1052
Query: 612 KQDKT------CYESQRVIGKLYRAVK-DIAPPTATIKSFTKEVAMQS 652
+D CY+S R +GKLYR +K + PP+ +A+ S
Sbjct: 1053 DEDNISDPLADCYQSDRALGKLYRRIKLNPLPPSTRSPVLVPSIAIAS 1100
>gi|225680005|gb|EEH18289.1| RNA-directed RNA polymerase Rdp1 [Paracoccidioides brasiliensis
Pb03]
Length = 1258
Score = 212 bits (540), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 134/405 (33%), Positives = 216/405 (53%), Gaps = 33/405 (8%)
Query: 326 EGVAQLDAILTDPLKAHEALELMSSGENTNVL-------KELLMCGYKPDV--EPFLLMM 376
+GV + L +++ A+E +S GE +V K +L K +PF+ +
Sbjct: 545 DGVGLISKFLAQMIQSEFAIETLS-GEPPSVFQFRLGGCKGILTVSSKAHRREDPFVTSL 603
Query: 377 LQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLES--------GQVFVQCSASRRRE 428
L+ +R + L+ + +I I G ++GCLDETG+L+ G + E
Sbjct: 604 LELWRVWQIKYLKEKAKIAIDKGAFLLGCLDETGSLKGYFRSKRLGGGATYEQKLDCLPE 663
Query: 429 FLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRP 488
+ G V+EG ++A+NP LHPGD+RV++AVD+P LHH+ D VV P G R
Sbjct: 664 IFVQILRHSEGTYEVIEGLCILARNPSLHPGDIRVVKAVDIPGLHHLKDVVVLPQTGDRD 723
Query: 489 HTNECSGSDLDGDVYFVCWDHELIPPLQF-PPMDYTPAPEKVLARDMTIEDVEEYFADYI 547
+ CSG DLDGD Y V WD +L+P F PMDY+ KVL RD+T++D+ ++F Y+
Sbjct: 724 IASMCSGGDLDGDDYVVIWDQDLLPKDWFEEPMDYSAPKSKVLDRDVTVDDIIKFFVSYM 783
Query: 548 VNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYP 607
ND L I AH+ AD D + +CL LA L + AVD++K+G+ + LR + +P
Sbjct: 784 QNDRLPQIALAHLAIADYSDDGVQDEKCLRLATLHSAAVDYNKSGIPVRMNQDLRPKKWP 843
Query: 608 DFMEK---QDKTCYESQRVIGKLYRAVKDIAPPT-ATIKSFTKEVAM----QSYDTDMEV 659
FME+ + + Y S++++G+LY DIA ++S + + + + + + E+
Sbjct: 844 HFMERKFAKKDSQYTSRKILGQLY----DIAGGVYLNLQSHSAKGRLPFDQRILNANFEI 899
Query: 660 DGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMA 704
D E ++ A + K EYD L +M + I++E E+ S ++ A
Sbjct: 900 D--EKLLSFAKELKGEYDADLRRIMAQHEIQSEEEVWSTFVLSHA 942
Score = 159 bits (402), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 143/249 (57%), Gaps = 28/249 (11%)
Query: 58 VTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLDKLYSTVLSPLISSTNEER 116
VTPS +Y+ P I NRV R Y + D FLR+ F DE ++ K++ S+ N
Sbjct: 388 VTPSTIYYKPPSIDTGNRVFRRYREYADRFLRVRFTDEKNMGKIFP------YSNANIVC 441
Query: 117 HTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFR 176
+Y RV T++NGI IGD+ +E LAFSN+Q+++++ + FAS P LTAA+IR +G F
Sbjct: 442 MNEVYTRVTLTMKNGITIGDRCYEFLAFSNAQLREHAAYFFASLPHLTAANIRAQLGKFN 501
Query: 177 DIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAE 236
I+NVAK+AAR+GQ F S+R + ++I+ ++E +G Y FSDG+G IS LA+
Sbjct: 502 PIRNVAKHAARVGQCFSSTRA---LTGCPVQIVEIDDIERNG--YTFSDGVGLISKFLAQ 556
Query: 237 IVAKNCGFTIYT-----PSAFQIRYGGYKGVVAV--------DPTSSTKLSL-RKSMLKY 282
++ F I T PS FQ R GG KG++ V DP ++ L L R +KY
Sbjct: 557 MIQSE--FAIETLSGEPPSVFQFRLGGCKGILTVSSKAHRREDPFVTSLLELWRVWQIKY 614
Query: 283 KSESTSLDI 291
E + I
Sbjct: 615 LKEKAKIAI 623
>gi|299753212|ref|XP_002911846.1| calcium:hydrogen antiporter [Coprinopsis cinerea okayama7#130]
gi|298410195|gb|EFI28352.1| calcium:hydrogen antiporter [Coprinopsis cinerea okayama7#130]
Length = 1681
Score = 211 bits (538), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 182/650 (28%), Positives = 302/650 (46%), Gaps = 71/650 (10%)
Query: 33 VLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSF 92
VLS+ P+ LD G V TP++V GP + SNR++R Y D FLR+ F
Sbjct: 870 VLSKFEYAKPS--LDRGTFPCCHVTFTPTRVLLEGPCPTQSNRIIRKYAGFEDKFLRVDF 927
Query: 93 VDEDLDKLYSTVLSPLISSTNEERHTTIY--ERVLSTLRNGIVIGDKKFETLAFSNSQVK 150
DED L + E +++ +RV + L+ G + + FE LA+S+S ++
Sbjct: 928 RDEDR----------LQYRWDREVDGSVFVRDRVGTVLKLGFELAGRTFEFLAYSSSALR 977
Query: 151 DNSMWMFASRPE----LTAADIRESMGDFRD---IKNVAKYAARLGQSFGSSREALHVDS 203
++++W + + + A IR S+GDF+ +K + YAARL Q+F ++ ++ +
Sbjct: 978 EHAVWFMSPFKKDGVIVDAESIRNSVGDFKGTELLKRPSMYAARLAQAFTATDPSVKIRR 1037
Query: 204 SDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGF-TIYTPSAFQIRYGGYKGV 262
+ E + D+ + Y F+DG+G IS+ LA+ + G P AFQIR+ GYKG+
Sbjct: 1038 GEWEDVDDLGEK----PYLFTDGVGTISSALADRIWAAVGRKNQRRPDAFQIRFLGYKGM 1093
Query: 263 VAVDP-----TSSTKLSLRKSMLKYKSESTSLDILAN-----SKYQPCFLNRQLITLLST 312
V+VD ++ LR SM K++++ D S +LNR L+ LL
Sbjct: 1094 VSVDKELDNHPHGIQMRLRPSMRKFENKGEEEDAEIEIAQSFSSPNAAYLNRPLVMLLED 1153
Query: 313 LGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTN-------VLKELLMCGY 365
LG R F + Q +A DA D ++ E + SG +L++L G
Sbjct: 1154 LGARKEDFLRLQNLEIA--DACTID--ESLEQFQKFMSGHGLGRPFGFQYLLRKLWNLGL 1209
Query: 366 KPDVE--------PFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQV 417
PFL ++ L +++ RI I + ++G DE E +
Sbjct: 1210 DLSSNKKGSSIDTPFLHLLRSVAINDVLRDIKHSARIKIPDSYLLVGIADEGPAYEK-RG 1268
Query: 418 FVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVP------S 471
+ + R + E ++G V ++++P H GD++ + A+ P +
Sbjct: 1269 YKNVYSLREGNIYACIQRHEDDEPTYIQGTVSISRSPVAHRGDVQRVYAIGEPPAGMFCA 1328
Query: 472 LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLA 531
+ + VV P+ G R + G D+DGD++ V L+P F P Y A K L
Sbjct: 1329 FRGLRNVVVLPSVGDRSLASCLGGGDVDGDMFSVITCDALLPSETFEPSAYESAGTKTLD 1388
Query: 532 RDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKT 591
RD T+ED+ ++ +YI +D LG++ + ++ AD D CL LA+L + AVD+ K
Sbjct: 1389 RDSTVEDICDFVVEYINSDVLGLLSDRLLIIADQSKDGFSDEACLALAELCSQAVDYPKQ 1448
Query: 592 GVAATIPSG----LRVEIYPDF-----MEKQDKTCYESQRVIGKLYRAVK 632
G+ + S + PD+ + ++ Y S R +G LYRAV+
Sbjct: 1449 GIPVDLDSNDLPRTLIRCKPDWHAAEVVSPRETDYYRSTRALGFLYRAVE 1498
>gi|66813222|ref|XP_640790.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
gi|60468778|gb|EAL66778.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
Length = 2285
Score = 211 bits (538), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 205/744 (27%), Positives = 339/744 (45%), Gaps = 141/744 (18%)
Query: 47 DDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS 106
++G + +N++ VTPS++ P ++L NR++R + E F+ +F DE+L+
Sbjct: 1068 NNGWVLINEIFVTPSRIVLKPPRLTLGNRILRKFSPE--KFILFNFTDENLE-------- 1117
Query: 107 PLISSTNEERHTTIYERVLSTLRNGIVI---GDKKFETLAFSNSQVKDNSMWMFASRPEL 163
P T ER+ + NGI I KK+ + S SQV++ S W F ++
Sbjct: 1118 PFRGLNKSSPLTKTIERIFN---NGIEIIQGSGKKYFFIGCSQSQVRNYSAW-FVLEDKV 1173
Query: 164 TAADIRESMGDFRDIK----NVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGI 219
T +S ++ IK + K L F ++ ++ + IE+IPD+ + +G
Sbjct: 1174 TN---EKSALNWSGIKYESLQMIKVFRNLCLLFSTTLKSQVI--YKIEMIPDI-ISKEG- 1226
Query: 220 TYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKS 278
+ F++G G I ++L E++ + + T A+QIR GG KGV+ ++ L +R S
Sbjct: 1227 -HNFTEGCGFIGSKLVELINQQNNYNSST-CAYQIRLGGSKGVLVLNENIDEMSLQIRPS 1284
Query: 279 M----LKYKS-----ESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVA 329
M L YKS E +L+I++ S C LNRQ ITLLS G+ D F + +
Sbjct: 1285 MSKFELDYKSGQLDEEHKTLEIVSASTTSRCKLNRQAITLLSNAGVEDSTFLQMLEVELN 1344
Query: 330 QLDAILTDPLKAHEALELMSSGENTNVLKELL------MCGYKPDVEPFLLMMLQTFRAS 383
Q L D N+ KELL + Y+ + ++ +L S
Sbjct: 1345 QNAQTLVD----------------VNLSKELLGDFFQHITEYELFNDYYIRSILLKLYKS 1388
Query: 384 NLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGV 443
L++++ + I ++ R ++G D +GTL V+++ + +DN + V
Sbjct: 1389 KLIKIQDKCWIEVKESRNLLGVCDTSGTLPEDTVYIEV---EELDPIDNLMKPK-----V 1440
Query: 444 VEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVY 503
+ G+V V KNPC HPGD+R L+A+D P L+ + + F G P+ +CSGSDLDGD Y
Sbjct: 1441 IIGRVAVLKNPCHHPGDVRFLKAIDHPPLNGKRNVLFFSTNGMVPNFKQCSGSDLDGDRY 1500
Query: 504 FVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIE--------DVEEYFAD---------- 545
FV +D LI + E L + T+ D ++Y D
Sbjct: 1501 FVIYDQTLI-------REDLITHEPYLGEEQTVNPLIGEEDSDDDQYENDDNDITIPTST 1553
Query: 546 ---------------YIVN---DSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVD 587
Y+ N LG I N H+ +D+E K S +++A I VD
Sbjct: 1554 TTKSTNNTPTKLSDIYLKNVDKSKLGTISNTHLAISDIE--KVSSINSIKVAIQCAIEVD 1611
Query: 588 FSKTGVAATIP----SGLRVEIYPDFMEKQDKTCYE-----------SQRVIGKLYRAVK 632
KT V IP S L+ + YP FM+ ++ + +E S RVIGK+Y
Sbjct: 1612 SVKTSVHGIIPRDVKSILKEKGYPHFMKIKNGSTFEYKGGNQRKYYISDRVIGKIY---- 1667
Query: 633 DIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYIT-DAFKYKTEYDNRLGNLMDYYGIKT 691
D A F E + D + V G+++Y+ + F +Y +++ +++ +G ++
Sbjct: 1668 DSAENLLWFGDFLPEAKV---DESLLVQGYKEYLNHENFTTYMDYKSKINSILRRFGAQS 1724
Query: 692 EAEILSGCIMEMAKSFDKKRDLEA 715
E ++L G M F +K +EA
Sbjct: 1725 EEDLLIGF---MDPQFSEKLSIEA 1745
>gi|426198551|gb|EKV48477.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1258
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 211/785 (26%), Positives = 355/785 (45%), Gaps = 113/785 (14%)
Query: 3 YIEHALET---LFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVT 59
Y++H L + R P E+ R+Y+ P LD + V T
Sbjct: 381 YVDHFLRKYGEVLQDRGPRVSPTDCFEQVKRRYI-------PPKATLD--IFRCRHVTFT 431
Query: 60 PSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEE--RH 117
P+++ GP + SNR++R Y + F+R+ F DED L N E
Sbjct: 432 PTRMLMEGPYATQSNRIIRQYSGYEEFFIRVDFRDEDR----------LQYRWNREVDGA 481
Query: 118 TTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFAS----RPELTAAD---IRE 170
+ + ERV + L++G I ++FE LA+S+S ++++++W P+ D IRE
Sbjct: 482 SFVRERVGTILKDGFTIAGRQFEFLAYSSSALREHAVWFMCPFEHHDPKYGRVDSMKIRE 541
Query: 171 SMGDFRD---IKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVE--DDGIT--YCF 223
+G+F+ +K +KYAARL Q+F ++ ++ + + E I D++ +DG Y F
Sbjct: 542 QIGNFKGTDLMKQPSKYAARLAQAFTATEASVSIKRDEWEEIEDIKPPKFEDGKPNPYLF 601
Query: 224 SDGIGKISAELAE-IVAKNC------GFTIYTPSAFQIRYGGYKGVVAVDPT-----SST 271
+DG+G IS L + I A+ C G PSA+QIR+ GYKGVVAVD +
Sbjct: 602 TDGVGSISKSLGDKIWAELCSNRRDHGENSIQPSAYQIRFLGYKGVVAVDEQLDKTGAGK 661
Query: 272 KLSLRKSMLKY---KSESTSLDILANSKYQP--CFLNRQLITLLSTLGIRDHVFEKKQRE 326
+ LR SM K+ + ++I A + P C+LNR L+ LL LG+ F Q +
Sbjct: 662 HMRLRNSMRKFLVVNDDVAPIEI-AQAFAHPNRCYLNRPLVMLLEDLGVNVDAFLTLQDK 720
Query: 327 GVAQLDAI---LTDPLKAHEALELMSSGENTNVLKELLMCGYK-----PDV----EPFLL 374
VA+ I + L L S + ++K+L G + PD PFL
Sbjct: 721 EVAKARTIHDSIDRFLSVISEHGLGRSFRFSYLVKQLQGLGLEINSKDPDKLNVDTPFLK 780
Query: 375 MMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDE-TGTLESGQVFVQCSASRRREFLDNS 433
+ + + +++ RI + + ++G DE + +G V C F+ +
Sbjct: 781 QVREVAMMDVMRDIKHSARILVPDSHLLVGIADEGPAYVSAGFENVYCLPP---GFI-YA 836
Query: 434 CNNRS--GELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS------LHHMVDCVVFPAKG 485
C S G+ +EG +V ++P H GD++ +RA+ P H+ + +V ++G
Sbjct: 837 CVQESPDGKAEWLEGHCLVTRSPVAHIGDVQRVRAIGKPPQGKLCLFSHIKNALVMSSQG 896
Query: 486 KRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFAD 545
R + G D+DGD++ V L+P PM+Y K + + T++D+ ++ +
Sbjct: 897 NRSLASCLGGGDVDGDLFQVIQYEPLLPMTYELPMEYESVGTKAITTECTVDDICDFVVE 956
Query: 546 YIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAA-----TIPSG 600
YI +D LG++ + ++ AD C+ LA+L + AVD+ K G+ +P
Sbjct: 957 YINSDVLGLLSDRLLMIADQSKLGMNDKDCIRLAELCSQAVDYPKNGIPVDLNKEKLPHT 1016
Query: 601 LRVEIYPDF-----MEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAM-QSYD 654
L + PD+ + ++ Y S R +G+LYR + P +K +K + +
Sbjct: 1017 L-IRCKPDWHAAEVVSPRETDYYRSTRALGELYRNISLTEP--EPMKPVSKNFELFRDPI 1073
Query: 655 TDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYY-----------------GIK-TEAEIL 696
+ + D E YI D TE D L + Y G K EAE++
Sbjct: 1074 SQVLSDRVEFYIGDLVLPTTEVDQTLEDTYSRYLEELNYIRFTHTLSNTPGAKLLEAEVV 1133
Query: 697 SGCIM 701
+G I+
Sbjct: 1134 AGTIL 1138
>gi|389748402|gb|EIM89579.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1346
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 197/714 (27%), Positives = 326/714 (45%), Gaps = 122/714 (17%)
Query: 26 EEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSY----P 81
E +RK +L R + L G Y + + TP++ GP + SNRV+R Y P
Sbjct: 403 EFDHRKALLQR-------LKLSKGHFYCHHITFTPTRTILEGPNPTQSNRVIRKYQEIDP 455
Query: 82 DEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIY--ERVLSTLRNGIVIGDKKF 139
+NF+R+ F DED L + + T + +RV L+NG + + F
Sbjct: 456 TFTENFIRVDFRDEDR----------LSYRWDRDVDGTYFLQQRVGHILKNGFELAGRDF 505
Query: 140 ETLAFSNSQVKDNSMWMF------ASRPE-----LTAADIRESMGDFRD-IKNVAKYAAR 187
E LA+S S ++++++W +S P + IR+S+GDF + I+ +KYAAR
Sbjct: 506 EFLAYSTSALREHAVWFVHPFHLPSSHPSHSGTYVNGHYIRQSLGDFSNVIRQPSKYAAR 565
Query: 188 LGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIV-AKNC---- 242
+ Q+F ++ ++ V E + D+ +D Y +DG+G IS EL ++ A+ C
Sbjct: 566 IAQAFTATDPSVKVTRDQWEEMEDIGDDD---RYLHTDGVGTISLELGGMIWAELCESRL 622
Query: 243 --GFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKY---KSESTSLDILANSK 296
G PSA+QIR+ GYKG+V +D K+ LR SM K+ E L+I +
Sbjct: 623 DHGGNTVRPSAYQIRFLGYKGMVVIDHRLVGIKMRLRPSMRKFVVDNDEDAWLEIARAFE 682
Query: 297 YQPCF-LNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTN 355
F LNR L+ +L G+R F Q E L +D ++ +L L + G
Sbjct: 683 RPNSFSLNRALVMILEDRGVRKESFISLQ-EQTKSLIYTSSDSIEKFVSL-LRTHGMGFG 740
Query: 356 -----VLKELLMCGY----------KPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGR 400
+L++L+ G K FL +L+ L +++ + +I +
Sbjct: 741 YHLPFILEQLVKLGLDFKETNRDGSKAIENAFLGRVLRFAMNGCLRDIKHKAQIPVPGSY 800
Query: 401 AMMGCLDE-------------TGTLESGQVF--VQCSASRRREFLDNSCNNRSGELGVVE 445
++GC DE TL +G +F VQ +FL C
Sbjct: 801 KLVGCADEGLAYIREGLDKDSVYTLPAGCIFACVQEGPGSETKFLKGPC----------- 849
Query: 446 GKVVVAKNPCLHPGDMRVLRAVDVPS------LHHMVDCVVFPAKGK------RPHTNEC 493
+++++P +HPGD++ + AV P + + VV P+ R +
Sbjct: 850 ---MISRSPVVHPGDIQRVWAVGEPPKDKICFFKDLKNLVVLPSVADPSSDTDRSLASML 906
Query: 494 SGSDLDGDVYFVCWDH-ELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSL 552
G DLDGD Y + D+ L+P + P DYT A + L RD T++D+ ++ +YI +D L
Sbjct: 907 GGGDLDGDQYDIIIDNGSLMPEVHSQPADYTGAGTRTLDRDATVDDICDFIVEYINSDVL 966
Query: 553 GVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATI---PSGLRVEIYPDF 609
G++ + H+ AD + ++C+ LA+L + AVD+ K G I P L PD+
Sbjct: 967 GLLSDKHLTIADQSREGTFDHRCMLLAELCSQAVDYPKNGKPVDISDLPRSLS-RFKPDW 1025
Query: 610 MEKQ-----DKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDME 658
+ + + YES R +G L+R + ++ P T K +V + + DM+
Sbjct: 1026 HQAEVSGPRENDYYESDRALGHLFRNI-ELMP---TQKGVPLDVPTKPTNPDMD 1075
>gi|346977552|gb|EGY21004.1| RNA-dependent RNA polymerase [Verticillium dahliae VdLs.17]
Length = 1444
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 128/335 (38%), Positives = 194/335 (57%), Gaps = 16/335 (4%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
V KV+VTP+ +Y S P + SNRV+R Y D FLR+ F DE ST
Sbjct: 490 VRKVVVTPTTIYLSSPGVEASNRVIRKYQHVSDRFLRVQFTDELTRGRIST-------RA 542
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESM 172
E +++RV T+ NGI IGD+ ++ LAF NSQ+++ + F L ++R+ M
Sbjct: 543 KMELDHYVFKRVYLTMINGIRIGDRHYKFLAFGNSQIRECGAYFFCETAHLKCTEMRQWM 602
Query: 173 GDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISA 232
G+F I VAK+AARLGQ F ++RE + + +I+IIPD+E +CF+DG+GKIS+
Sbjct: 603 GNFNHIHIVAKFAARLGQCFSTTREIRSIRAPNIQIIPDIERN----GHCFTDGVGKISS 658
Query: 233 ELAEIVAKNCGF-TIYTPSAFQIRYGGYKGVVAVDPTS-STKLSLRKSMLKYKSESTSLD 290
LA +V + G T+ TPSAFQ R GG KGV+AV P + + +RKS K+K+ L+
Sbjct: 659 FLASMVLEEMGLETVETPSAFQFRMGGCKGVLAVWPEAKGMYVHIRKSQEKFKATFNGLE 718
Query: 291 ILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSS 350
I+ +++ LNRQ IT+L++LGI+ VF + + + + D A L
Sbjct: 719 IIRCARFSVATLNRQTITILTSLGIKSEVFMDLLQRQLHGYEKAMNDQGAAAVLLGRHID 778
Query: 351 GENTNV-LKELLMCGY-KPDV-EPFLLMMLQTFRA 382
+T++ L++L+ G+ + DV EPF+L +LQ +R
Sbjct: 779 ENHTSLALRDLINWGFMRHDVQEPFVLTILQLWRG 813
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 126/261 (48%), Gaps = 44/261 (16%)
Query: 441 LGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDG 500
L + G +V +NP LHPGD+RV+ AVDVP L HM + VVFP+ G + SG DLDG
Sbjct: 808 LQLWRGVCIVGRNPSLHPGDVRVVEAVDVPQLRHMKNVVVFPSTGDVDVPSMLSGGDLDG 867
Query: 501 DVYFVCWDHELIPPL-QFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAH 559
D +FV WD LIPP+ F PMD KV+ RD+ +D+
Sbjct: 868 DDFFVIWDPNLIPPVWNFRPMDNVAPQPKVVDRDVNAKDL-------------------- 907
Query: 560 VVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFM-EKQDK-TC 617
L+LAKL + AVD+ K+G A + LR +P FM E+++K +
Sbjct: 908 ---------------SLQLAKLHSKAVDYVKSGDPAELGRELRARRWPHFMGERRNKNSL 952
Query: 618 YESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYD 677
Y S +G++Y V+D+ K F + + + D V + A + K+ YD
Sbjct: 953 YHSYTALGQIYDRVQDVPFNPLYEKKFDRRILSRFAPIDNAV------LKQARRLKSTYD 1006
Query: 678 NRLGNLMDYYGIKTEAEILSG 698
+ LM + TE EI +G
Sbjct: 1007 TAMRRLMAQREVSTEFEIWTG 1027
>gi|340960580|gb|EGS21761.1| hypothetical protein CTHT_0036280 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1520
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 151/461 (32%), Positives = 220/461 (47%), Gaps = 44/461 (9%)
Query: 185 AARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGF 244
A R+G F ++R A + +E IPD+E D Y F+DG G IS LA+ +A+ G
Sbjct: 2 AKRIGLLFSTARVAKVIPPDRVEDIPDIESPDG---YVFTDGCGLISPHLAQDLARRLGI 58
Query: 245 TI----YTPSAFQIRYGGYKGVVAVDPTSSTK----LSLRKSMLKYKS-ESTSLDILANS 295
YTPS QIRY GYKGVV VDP ++ L +RKSM K+ + S ++ S
Sbjct: 59 VFRDRRYTPSVLQIRYRGYKGVVTVDPRMTSDPRILLRMRKSMKKFSGGDDHSFSVVEYS 118
Query: 296 K-YQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENT 354
K + FLN ++I LL+ LG+ + +KKQ L DP A L SG N
Sbjct: 119 KPFTYGFLNDEVIVLLNALGVDREIIKKKQDNHFKFLADASRDPRSAFRFL----SGLNM 174
Query: 355 NVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELR-TRTRIFIQNGRAMMGCLDETGTLE 413
L E ++ + P + +++ A L + + RI I R + G D G L+
Sbjct: 175 PDLAESVLVESFDAIRPRIRSLVKNEYAKMLNKREEQKCRILIPKSRLLFGVCDAWGVLK 234
Query: 414 SGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLH 473
G+ V+ + + + +V+V +NPCLHPGD++ R V+ P L
Sbjct: 235 EGECAVKIT-----------LEENGLPMALKNCEVLVTRNPCLHPGDLQKFRVVERPELS 283
Query: 474 HMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARD 533
H+VDC+VF KGKRP + SG DLDGD +FVCWD +LIP P Y E +
Sbjct: 284 HLVDCIVFSTKGKRPAADMMSGGDLDGDTFFVCWDLDLIPKTLSQPAKYPGVKEPIRFTP 343
Query: 534 MTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGV 593
+T +D E+F Y N SLG + N ++ A S +C EL +L + VD
Sbjct: 344 ITDDDRLEFFVRY-TNASLGRVKNLYLDWA--RAGGPMSPECQELNRLFSQCVD------ 394
Query: 594 AATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDI 634
G R++I P + ++ +L+ A K +
Sbjct: 395 ------GNRIKIPPRLEKAPSPPSDAPPFILDELHEAAKRL 429
>gi|392597023|gb|EIW86345.1| RdRP-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 1223
Score = 208 bits (530), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 187/645 (28%), Positives = 304/645 (47%), Gaps = 75/645 (11%)
Query: 36 RRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDE 95
R LTSP DG ++ TPS GP SN V+R + + + FLR+SF DE
Sbjct: 420 RGLLTSPLAR--DGAYEAYHLIFTPSTYILDGPLPDQSNSVLRRFGNH-ECFLRVSFQDE 476
Query: 96 DLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMW 155
+ +PL + +R G + + +E L +S S ++++S+W
Sbjct: 477 NR--------APLRRDFEYSISELMQKRFRPIFLGGHKVAGRHYEFLGYSMSGLREHSVW 528
Query: 156 M---FASRPELT--AADIRESMGDFRDIK-NVAKYAARLGQSFGSSREALHVDSSDIEII 209
F S +T A IR +GDF +++ A+ AR Q+F ++ ++ ++ +I+ +
Sbjct: 529 FVTPFTSDKGITMDAETIRGQLGDFSELQYKPARLGARWSQAFSTTDPSVTLERREIQYV 588
Query: 210 PDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFT-------IYTPSAFQIRYGGYKGV 262
D+ C +DG IS ELA + + T + PSAFQ R GG KGV
Sbjct: 589 NDITSASGN---CMTDGCSSISIELAREIWTSLNRTRRRTFPLKFPPSAFQFRLGGAKGV 645
Query: 263 VAVDPTSSTKL-SLRKSMLKYKSEST-SLDILANS-KYQPCFLNRQLITLLSTLGIRDHV 319
V +P + ++ LRKS K+++ + + D+ +++ + +P FLNR LI +L LG +D +
Sbjct: 646 VVQNPDLNDRVVCLRKSQRKFEAPNVLTFDVQSHTARPRPMFLNRPLIAILEHLGEQDTM 705
Query: 320 --FEKKQREGVAQLDAILTDPLKAHEALELMSSGEN-------TNVLKELLMC------- 363
+ Q + + + + A + L++ G + N+ KEL M
Sbjct: 706 DRILELQHADIQEAQGVRSSFRDAAKMLQVHGLGASFHLTSLFGNLAKELNMRVWTRESD 765
Query: 364 -GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCS 422
G++ +V ++ L+ L EL+ R I + +MG DE L G++F
Sbjct: 766 DGWQNEV---VIDALRCISTHALRELKYRAHIRVPGSYTLMGVSDEWNCLRPGEIFATVR 822
Query: 423 ASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFP 482
+ R+G + G+V V ++P +HPGD++V+ AV P L H+ + VVF
Sbjct: 823 ------------DIRNGLDKPIVGRVAVTRSPQIHPGDIQVVTAVRRPELEHLTNVVVFS 870
Query: 483 AKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEY 542
+G R + G DLDGD + + D L P P Y P K IEDV ++
Sbjct: 871 TQGDRALPSFLGGGDLDGDDFNLILDEALFPTANSEPGSYVSLPIKETTHPCGIEDVVDF 930
Query: 543 FADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAA---TIPS 599
+Y D +G I H+ ADLE S C+ LA+L+ AVDF KTG +P
Sbjct: 931 VFNYFETDLVGRIAIMHLRFADLEDPGCAS--CMTLAELAAQAVDFPKTGTPVDFKLLPR 988
Query: 600 GLRVEIYPDFMEKQ------DKTCYESQRVIGKLYRAV--KDIAP 636
EI PDF+ ++ ++ YESQ+++G+L+R V +D +P
Sbjct: 989 LPDKEIKPDFLAREGENPHKNERFYESQKLLGELFRRVPLQDWSP 1033
>gi|343426952|emb|CBQ70480.1| related to RNA-directed RNA polymerase [Sporisorium reilianum SRZ2]
Length = 1037
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 183/621 (29%), Positives = 309/621 (49%), Gaps = 105/621 (16%)
Query: 58 VTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERH 117
+TP++V SGP +SNRV+RSYP D+F RLS E + +T ++P + ER+
Sbjct: 137 LTPTRVLLSGPHWHMSNRVIRSYPGHWDHFARLSITSESREG--ATTITPNYGFDDAERY 194
Query: 118 TTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMF-----ASRPELTAADIRESM 172
I RVL L+NGI++ ++F+ LA+S+S + +++W A+ + A +R+S+
Sbjct: 195 --IRGRVLDILKNGIIVAGRRFQLLAWSSSSMSSHTVWFVTPFLDATGRLVDANSVRKSL 252
Query: 173 GDFRD-IKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKIS 231
G+F+D I+ A YA D+G + +DG+G+IS
Sbjct: 253 GNFKDVIRKPAMYA------------------------------DNGQDH--TDGVGQIS 280
Query: 232 ----AELAEIVAKNCG-------FTIYTPSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSM 279
A++ E N G PSA QIR GG KG+++++P + K L +R SM
Sbjct: 281 PALMADVWESYLVNHGEFRKRKLLKASAPSAIQIRLGGSKGMLSLNPRLTGKVLYIRPSM 340
Query: 280 LKYKSESTSLDILANSKYQPCF---LNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILT 336
K+ S+ L++ ANS + C LNR L+ L G+ F Q E ++Q+
Sbjct: 341 SKFDSQHQDLEV-ANSSSR-CLTAKLNRPLVNALDDRGVHASAFIAIQDEAISQIGRARH 398
Query: 337 DPLKAHEALELMSSGENTNV------LKELLMCGYKPDVEPFLLMMLQTFRASNLLELRT 390
+ + + S G N+ + ++ + D E F L++ + A+ L +++
Sbjct: 399 NFDETARLVSAFSFGTGCNLRILFEKVHKVGLGAASTDPESFFLVLAKAVTAAALGDMKR 458
Query: 391 RTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVV 450
+ RI + G ++G DE G L+ G+VFVQ E +D +R ++ G+ ++
Sbjct: 459 KARIPVA-GVTLLGIADEFGYLKEGEVFVQV------ETVDFGQVSRR----ILTGRKLI 507
Query: 451 AKNPCLHPGDMRVLRAVDVPSLHHMV---DCVVFPAKGK-RPHTNECSGSDLDGDVYFVC 506
++P + P D+ +++ P H ++ + VVF + +P G DLDGD+Y +
Sbjct: 508 GRSPTIDPSDITMVQCKKPPPGHPLLQLRNVVVFNTCTRLQPLPRRLGGGDLDGDLYTIY 567
Query: 507 WDHELIPPLQFPPMDYTPAPE-----KVLARDMT----IEDVEEYFADYIVNDSLGVICN 557
D L PP TP PE KV A++++ D+ ++FAD+++ND +G++ +
Sbjct: 568 EDERLFPP--------TPQPEAVFHAKVEAKELSHPCNAHDLADFFADFMLNDFVGLVSS 619
Query: 558 AHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVA---ATIPSGLRVEIYPDFM---- 610
H+ +D A +C LAKL + A DF KTGVA + +P + I PDF+
Sbjct: 620 LHLRISDASEAGAADPRCKTLAKLHSQATDFRKTGVAVKRSQLPP-MHEPIVPDFLAQSE 678
Query: 611 EKQDKTCYESQRVIGKLYRAV 631
+++ K Y S+R +G LYR+V
Sbjct: 679 KREGKLVYSSRRALGYLYRSV 699
>gi|170117206|ref|XP_001889791.1| RNA-directed RNA polymerase [Laccaria bicolor S238N-H82]
gi|164635257|gb|EDQ99567.1| RNA-directed RNA polymerase [Laccaria bicolor S238N-H82]
Length = 1690
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 176/561 (31%), Positives = 265/561 (47%), Gaps = 64/561 (11%)
Query: 63 VYFSGPEISL------SNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEER 116
V FS I+L SNRV+ S D+ F+ LSF E P +S
Sbjct: 42 VSFSTDAITLRIEQFPSNRVIHS--DDPSKFILLSFGKE----FRFPDHPPRVSG----- 90
Query: 117 HTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFR 176
E + L+ G + D ++ SNSQ++ S ++ + + D +GDF
Sbjct: 91 -----EYIARLLKAGFFLNDIQYRFYHHSNSQLRGRSCFLRQANNDKELDDRIYQLGDFG 145
Query: 177 DIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAE 236
I N+AK A R+G F S++ +D I IPD++ D+ FSDG G IS L+
Sbjct: 146 RIMNIAKRAKRIGLLFSSAQIDYRLDPKYIADIPDIQDGDE----LFSDGCGLISKRLSI 201
Query: 237 IVAKNCGFTI----YTPSAFQIRYGGYKGVVAVDPTSSTK----LSLRKSMLKYKSEST- 287
++K T YTP+ FQIRY GYKGV+ + P + RKSM K+ + +
Sbjct: 202 ALSKAKRITFRNVRYTPTVFQIRYLGYKGVLMLHPQLDAEGKHLAQFRKSMKKFTTTTDH 261
Query: 288 SLDILANSK-YQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALE 346
+ ++ +S+ Y LN +I LLS LG+ + KQ E L DP A ++
Sbjct: 262 TFSVVGHSRPYTFGRLNNDIIVLLSCLGVTNEKLLNKQDEYFQWLRNATEDPTAA---VD 318
Query: 347 LMSSGENTNVLKELLMCGYK-PDV--EPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMM 403
+S + + ++L+ G PDV E L + + R ++ E + ++R+ I+ R +
Sbjct: 319 FLSCIDQYPLAGKVLLNGINDPDVAKEIRRLQLGEIARYTDERE-KFKSRMIIRESRRLF 377
Query: 404 GCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRV 463
G D L+ G+V ++ ASR+ G + G V++ +NPCLHPGD
Sbjct: 378 GVCDPFQVLKEGEVHIRIMASRK------------GPSTPIHGDVLIVRNPCLHPGDCLK 425
Query: 464 LRAVDVPSLHHMVDCVVFPAKGKRPH---TNECSGSDLDGDVYFVCWDHELIPPLQFPPM 520
LRAV L H+VDC+VF + + H + SG DLDGD + VCWD +L+PP
Sbjct: 426 LRAVHNDKLSHLVDCLVFASVARPGHHAAPSMSSGGDLDGDEFLVCWDKDLVPPRISESY 485
Query: 521 DYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAK 580
DY P ++ +++ +T ED+ +FA Y L + H A P A S QC EL
Sbjct: 486 DY-PGNKERISKKVTREDLAVHFASYNAA-GLARVSALHNKWARYSPQGALSVQCQELNA 543
Query: 581 LSTIAVDFSKTGVAATIPSGL 601
L + +VD G IP L
Sbjct: 544 LHSQSVD----GAGIKIPDRL 560
>gi|393247227|gb|EJD54735.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1217
Score = 207 bits (526), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 185/632 (29%), Positives = 286/632 (45%), Gaps = 85/632 (13%)
Query: 56 VLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEE 115
V V+P+ V GP NRV+ Y +NF+R++FVD D P +
Sbjct: 397 VSVSPANVSIIGPIPDDLNRVLYQYRAYHENFIRVAFVDNDGQ--------PFRYDPDVN 448
Query: 116 RHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDN--SMWMFASRPEL-----TAADI 168
+ VL LR+G+ +G + F+ LA+S S +K + +W+ + + +A+ I
Sbjct: 449 TQALVDAHVLPILRDGLTLGGRLFKFLAYSQSGLKQHWEQVWLVHTFTDALGHTHSASTI 508
Query: 169 RESMGDF-RDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGI 227
R S+G F +D + A+ AR+ +F ++ + + + + +PD+ DG T C +DG
Sbjct: 509 RASLGTFTKDERCPARVGARMSLAFSATVPSGSLSVARLRNLPDIG--GDGHT-CMTDGA 565
Query: 228 GKIS-AELAEIVAKNC------GFTIY---TPSAFQIRYGGYKGVVAVDPT-SSTKLSLR 276
G IS A + C G T PS Q+R G KGV+ VDPT ++ +R
Sbjct: 566 GLISRAAMDRAWIHFCAARGRRGRTAELPPAPSVIQVRVKGAKGVLLVDPTLQGLRIVVR 625
Query: 277 KSMLKYKSESTSLDI-LANSKYQP--CFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDA 333
SM+K+ + +I + N+ P FLNR LI +L G+ F Q++ VA+
Sbjct: 626 PSMVKFSAGEQYDNIEICNAFTAPSRAFLNRPLIMVLEARGVPKETFLWLQQQVVAETQL 685
Query: 334 ILTDPLKAHEALELMSSGENTNVLKELLMCGYK----PDVEPFL------LMMLQTFRAS 383
+ L A LE GE+ N+ L + P+VE L + F +
Sbjct: 686 AVQSLLPAAALLESNGLGESLNLPTLLRRIASRFANFPEVEQHLVAEDAFMTRCLDFAVN 745
Query: 384 NLLE-LRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELG 442
++L L+ R RI + + ++G D G LE G+V V + L
Sbjct: 746 HVLRGLKFRGRIPVPDSWTLVGVPDHHGILEEGEVLVGI------------MDGDPLRLR 793
Query: 443 VVEGKVVVAKNPCLHPGDMRVLRAVDVP------SLHHMVDCVVFPAKGKRPHTNECSGS 496
++G V V ++P HPGD+ V+RA+ P L +C+VF KG R + G
Sbjct: 794 YLKGGVTVTRSPVCHPGDVMVMRAIGPPRAGSAFELLRPKNCIVFSTKGSRSPVSCLGGG 853
Query: 497 DLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVIC 556
D DGD Y V + PP P Y +P + + R ED+ + D+I ND L I
Sbjct: 854 DYDGDEYVVMKPAYMRPPEPAAPAMYKNSPRQDIGRRYRKEDLLKVVPDFINNDQLPRIA 913
Query: 557 NAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVA---ATIPSGLRVEIYPD----- 608
+ AD+ P +CL+L+ L +IAVDF KTG+ A IP ++PD
Sbjct: 914 ATWLRIADISPQGVYDPRCLKLSALHSIAVDFPKTGIPVKHADIPQA--PNMFPDWSMSE 971
Query: 609 ---------FMEKQDKTCYESQRVIGKLYRAV 631
FM++ Y S R +G LYRA+
Sbjct: 972 LGAADHNKSFMDR----IYPSDRALGHLYRAI 999
>gi|116195262|ref|XP_001223443.1| hypothetical protein CHGG_04229 [Chaetomium globosum CBS 148.51]
gi|88180142|gb|EAQ87610.1| hypothetical protein CHGG_04229 [Chaetomium globosum CBS 148.51]
Length = 1676
Score = 206 bits (525), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 145/425 (34%), Positives = 215/425 (50%), Gaps = 44/425 (10%)
Query: 176 RDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELA 235
R + A Y+ R Q + S R + +E IPD+E D Y F+DG G ++ +LA
Sbjct: 139 RRLSGSASYSPRPRQPWPSRR-------NRVEDIPDIETAD----YIFTDGCGLVAPKLA 187
Query: 236 EIVAKNCGFTI----YTPSAFQIRYGGYKGVVAVDPTSSTK----LSLRKSMLKYKS-ES 286
+ +A+ G YTPS QIRY GYKGVV VDPT + L +RKSM K+ +
Sbjct: 188 QELARRVGIVFRDRRYTPSVLQIRYRGYKGVVTVDPTMAADKKYLLRMRKSMKKFSGGDD 247
Query: 287 TSLDILANSK-YQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL 345
S ++ +SK Y +LN ++I LL LG+ V ++KQ E L DP A L
Sbjct: 248 HSFSVVEHSKPYTYGYLNDEVIILLDALGVDRAVIKRKQEEHFRFLADATQDPRSAFRFL 307
Query: 346 ELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELR--TRTRIFIQNGRAMM 403
+ N L E ++ V P + +++ A +L R + RI + R +
Sbjct: 308 CYV----NMPQLAERVLMDSLESVRPRIQALVKNEYA-KMLNKRDEQKCRILLPKSRLLF 362
Query: 404 GCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEG-KVVVAKNPCLHPGDMR 462
G D G L+ G+ V+ + + G+ ++G V+V +NPCLHPGDM+
Sbjct: 363 GVCDAWGVLKEGECAVKITM------------DGDGQPAALKGCDVLVTRNPCLHPGDMQ 410
Query: 463 VLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDY 522
+ V+ L H+VDC+VF ++G+RP + SG DLDGD +FVCWD +++P P Y
Sbjct: 411 KFKVVEKRELAHLVDCIVFSSQGRRPAADLMSGGDLDGDTFFVCWDSDIVPATLSQPAQY 470
Query: 523 TPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLS 582
A E++ +T +D EYFA Y N SLG + N ++ A A + QC EL +L
Sbjct: 471 PGAKERLRFEPITDDDRLEYFARY-NNASLGRVKNLYLDWARAR--GAMAEQCQELNRLF 527
Query: 583 TIAVD 587
+ VD
Sbjct: 528 SQCVD 532
>gi|299752904|ref|XP_001832921.2| RNA-dependent RNA polymerase [Coprinopsis cinerea okayama7#130]
gi|298410053|gb|EAU88888.2| RNA-dependent RNA polymerase [Coprinopsis cinerea okayama7#130]
Length = 1251
Score = 206 bits (524), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 187/664 (28%), Positives = 307/664 (46%), Gaps = 107/664 (16%)
Query: 41 SPAVALDDGLIYVN-KVLVTPSKVYFSGPEISLSNRVVRSY-PDEIDNFLRLSFVDEDLD 98
SP++ DG Y + V VTP+ ++ GP SNRV+R+Y P +FLR++F DE
Sbjct: 421 SPSLEATDGSNYQSLHVTVTPTAIFLEGPYPEQSNRVIRAYDPQHHSSFLRVTFADEGRL 480
Query: 99 KLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMF- 157
+ S S + + R L NG+ I ++FE LA+S S +K++S+W
Sbjct: 481 QYRS-------SDRQVDHKAFVRARFGDILLNGLEIAGRRFEFLAYSMSALKEHSVWFVK 533
Query: 158 -------ASRPELTAADIRESMGDF-------RDIKNVAKYAARLGQSFGSSRE-ALHVD 202
R +TA I +S+G F R + A+YAAR+ Q+F ++ + V
Sbjct: 534 PFDVIENGHRVTVTADSIIQSLGTFDGLDFEPRLMHCPARYAARISQAFTATDLCTIEVQ 593
Query: 203 SSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNC-GFTIYTPSAFQIRYGGYKG 261
+I +I D+EV G + +DG+G +S + + K P+A Q+R GG KG
Sbjct: 594 DLEITVIDDIEVTSGGHKWTHTDGVGTMSPMASRAIWKALPKRKGPAPAADQVRIGGAKG 653
Query: 262 VVAVDPT-SSTKLSLRKSMLKYKSESTSLDILANS--KYQPCFLNRQLITLLSTLGIRDH 318
+++VD T + K+ LR SM+K+++ + +A + + P +LNR LI +L LG+
Sbjct: 654 MLSVDYTLTGHKICLRPSMVKFEAPTRKYIEIARAFDRPTPYYLNRPLIMILEGLGVPYS 713
Query: 319 VFEKKQREGVAQLDAILTDPLKAHEALE---LMSSGENTNVLKELLMCGYK---PDVEPF 372
FE Q V + + +A L+ L SS ++V+ L G + PD F
Sbjct: 714 TFEHFQDRAVRETRQAASSLRRAASMLDSYGLGSSFRLSSVMNSLDRLGIRHLNPD--KF 771
Query: 373 LLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDN 432
++ L +L+ RI I ++G D L+ G++F + + F
Sbjct: 772 YSKAMEFAINHVLRDLKNHARIPIPGAWTLVGVADVHRFLQPGEIFAYVKPTNEKGF--- 828
Query: 433 SCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVP------SLHHMVDCVVFPAKGK 486
+EG ++++++PC+HPGD+R+ RA+ P + + VVF
Sbjct: 829 ----------YLEGDILISRSPCIHPGDVRITRAIGPPPPGSPFEREPLANTVVFNVLAS 878
Query: 487 RPHTNEC-SGSDLDGDVYFVCWDHELIP----------PLQFP-PMDYTPAPEKVLARDM 534
C G DLDGD Y L+P P + P P Y PA ++ L
Sbjct: 879 ------CLGGGDLDGDTY------NLLPLSDPALQGFRPTRIPEPSQYAPAEKRYLEEKS 926
Query: 535 TIEDVEEYFADYIVNDSLGVIC-NAHVV-----HADL--------EPDKAR--SNQCLEL 578
T+ DV E+ +YI++D LG++ N ++ HA L +PD + C+ L
Sbjct: 927 TMRDVAEFVLEYILSDVLGMVSINWRIIADQSRHAYLATYPTANGDPDSTGIFDSDCMLL 986
Query: 579 AKLSTIAVDFSKTGVAA---TIPSGLRVEIYPDF-------MEKQDKTCYESQRVIGKLY 628
A L + AVD+ K+G IP L+ ++ PD+ + + Y S +GKL+
Sbjct: 987 ADLHSAAVDYPKSGTPVDFKKIPR-LKHKLKPDWNAPETLDAQALSEKYYVSSTALGKLF 1045
Query: 629 RAVK 632
R ++
Sbjct: 1046 RRIE 1049
>gi|392564352|gb|EIW57530.1| RdRP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 1232
Score = 206 bits (523), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 178/644 (27%), Positives = 312/644 (48%), Gaps = 100/644 (15%)
Query: 49 GLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPL 108
G + V+VTP+++ GP + SNRVVR Y D +NF+R+ F DE+ ++ +
Sbjct: 417 GTLKCFHVIVTPTRILLEGPYDTQSNRVVRKYHDYRENFVRVEFRDEN--RMAFRWPKEV 474
Query: 109 ISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA--SRPE---L 163
S++ I ER + L+ G+ I ++F L +SNS +++++ W + P+ L
Sbjct: 475 NSAS------LIEERFGTILKEGLEIAGRRFRFLGYSNSGLREHTTWFMSDFEHPDEGLL 528
Query: 164 TAADIRESMGDFRDIKNV-AKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGIT-Y 221
T IR+S+G+F ++ + +KYAAR+ Q+F + ++ + D ++ D G +
Sbjct: 529 TPDRIRDSLGNFSNVNTIPSKYAARIAQAFSGTDPSVRIRRDQW----DDQLADLGKKPF 584
Query: 222 CFSDGIGKISA----ELAEIVAK---NCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKL 273
+DG G IS E+ +++ K + PSA+QIR+ G+KG+V VD T +
Sbjct: 585 WHTDGQGTISVGLRDEIWDVLVKAQPDKAKLTLKPSAYQIRFLGFKGIVVVDETLEGVYM 644
Query: 274 SLRKSMLKYKS----ESTSLDILANSKYQP--CFLNRQLITLLSTLGIRDHVFEKKQREG 327
LR +M K+K+ E+ + +A + P L R LI +L LG+R + Q
Sbjct: 645 RLRPTMNKFKAHADDEADAEIEIAKAFIYPGTARLCRPLIMVLEDLGVRKEAMLELQNLA 704
Query: 328 VAQLDAILTDPLKAHEALELMSS---GENTNV------LKELLMCGYK----PDV--EPF 372
A ++T E + L+ G++ + L+ MC + PDV F
Sbjct: 705 KA---VVVTASDSMGETINLLRKHALGDSFGLRHILEHLRRAGMCMRREAGSPDVMDNDF 761
Query: 373 LLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDN 432
+L +++ + L E++ RI I N ++G DE G ++Q R E+ D
Sbjct: 762 ILQLVKYAQHHILHEIKHDARIPIPNAHQLVGVADE------GPAYMQ-----REEYKDK 810
Query: 433 -----------SCNNR--SGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS------LH 473
+C + GE V+G+V ++++P +HPGD++ +RA+ P
Sbjct: 811 EVFCLGMGEIFACVEQPDGGEPLYVKGQVTISRSPHIHPGDVQRVRAIGKPPDDKLCLFR 870
Query: 474 HMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARD 533
++ + VV P+ G+R + +G D+DGD + V D L+P P Y + + R
Sbjct: 871 NLRNVVVLPSVGERSLASCLAGGDVDGDEFLVIKDPTLLPTTNADPASYDAGDPRDIGRP 930
Query: 534 MTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGV 593
TI+D+ + +Y+ +D +G++ + H+ AD C+ LA+L + AVD+ K GV
Sbjct: 931 STIDDICNFLLEYMQSDVMGLVADQHLKIAD----------CMVLARLCSQAVDYPKNGV 980
Query: 594 AA---TIPSGLRVEIYPDFMEKQDKTC-----YESQRVIGKLYR 629
++P L + PD+ + +D YES R +G L+R
Sbjct: 981 PVNLESMPEPL-IRAKPDWKKSEDNDPRPSDYYESTRALGALFR 1023
>gi|409046075|gb|EKM55555.1| hypothetical protein PHACADRAFT_161565 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1108
Score = 205 bits (522), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 185/649 (28%), Positives = 307/649 (47%), Gaps = 95/649 (14%)
Query: 58 VTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERH 117
VTPS++ GP NRVVR Y NFLR+SF+DE+ +L + + +
Sbjct: 328 VTPSRLLLEGPFPERCNRVVRKYAGHTSNFLRVSFMDEN--RLQYRF------DRDVDGY 379
Query: 118 TTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMF--------ASRPELTAADIR 169
I +R + L G+ I + F+ LA+S S +K++S+W + +T I
Sbjct: 380 DFIRKRFGTLLFEGLWIAGRHFKFLAYSQSALKNHSVWFVRDFTAHENGTEVHVTVDSII 439
Query: 170 ESMGDFRDI-------KNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYC 222
+G FR++ + A+Y AR+ Q+F ++ A V+ E+ P ++ D
Sbjct: 440 AGLGIFRNVPQDLELMRCPARYGARVAQAFTTTEAA--VEVEVEEVFPVEDMMDPNGYRS 497
Query: 223 FSDGIGKISAELA--------EIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK-L 273
F+DGIG +S ELA E ++ + P AFQIR+ G+KG+++VD S + +
Sbjct: 498 FTDGIGLVSQELAADIWGALQEKSVRHRRYGRCMPRAFQIRFQGFKGMLSVDHNLSGRAV 557
Query: 274 SLRKSMLKYKS-ESTSLDIL-ANSKYQPCFLNRQLITLLSTLGIRDH--VFEKKQREGVA 329
LR SM K+++ ES ++++ A +K +L+R L LL L +R +F+ Q
Sbjct: 558 CLRLSMKKFEAPESMTIEVASAFNKPGRLYLSRPLTMLLEGLKVRGGFGIFKTLQ----- 612
Query: 330 QLDAILTDPLKA----------HEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQT 379
DA++ D +A EA L ++ + +++ +L G + +PFLL L+
Sbjct: 613 --DAVIKDTKEATRSFRQAATLWEAYGLGTAFKLSSIFLDLAKFGSEAIEDPFLLQCLKF 670
Query: 380 FRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSG 439
L +L+ RI + G +++G D G L+ G++F +C
Sbjct: 671 GIYHILRDLKYHARIPVPKGYSLVGVADIHGYLKEGEIF--------------AC----- 711
Query: 440 ELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVD------CVVFPAKGKRPHTNEC 493
V + + +HPGD++V A+ P + D VVF +G RP +
Sbjct: 712 --------VAQSWSSTIHPGDVQVATAIGRPPPGTVFDEEPLTNTVVFSTRGTRPLASCL 763
Query: 494 SGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLG 553
SG DLDGDV+ + L+P + P +Y A K + T DV ++ +Y +D++G
Sbjct: 764 SGGDLDGDVFMLTTLEGLLPTEIYEPAEYASAQRKTVPHTSTRRDVADFILEYFYSDNIG 823
Query: 554 VICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAAT---IPSGLRVEIYPDFM 610
+I ++ +V AD CL LA+L + A D+ KTG + +P + PD+
Sbjct: 824 MIVSSWLVQADQSDQGIFDEACLTLAELHSDAADYPKTGNPVSMRKVPRYALPTMKPDWS 883
Query: 611 --EKQDKTC--YESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDT 655
E QD+ Y+SQR IG+LYR V+ P + +V + + DT
Sbjct: 884 APEIQDRLGLFYQSQRSIGRLYREVQLPVPRAQPPPANAFDVHLNTADT 932
>gi|449547217|gb|EMD38185.1| hypothetical protein CERSUDRAFT_113336 [Ceriporiopsis subvermispora
B]
Length = 1207
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 186/647 (28%), Positives = 303/647 (46%), Gaps = 93/647 (14%)
Query: 56 VLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEE 115
V TP+K+ GP + SNRV+R Y D F+R+ F DE D+L + S
Sbjct: 410 VTFTPTKMVLEGPYVIQSNRVIRRYVGFQDRFIRVDFRDE--DRLQYRWAKEVDGS---- 463
Query: 116 RHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA--SRPE---LTAADIRE 170
+ +++RV LR G + ++FE LA+S S ++++++W P +TA IRE
Sbjct: 464 --SLLHDRVGGILRKGFDLAGRRFEFLAYSTSALREHAVWFMNPFEHPREGLVTAQGIRE 521
Query: 171 SMGDF---RDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGI 227
S+GDF + IK +KYAAR+ Q+F ++ ++ + E +PD+ ED Y ++DG+
Sbjct: 522 SLGDFSGSKVIKQPSKYAARMAQAFTATDPSVSITRDQWETVPDLG-ED---PYLYTDGV 577
Query: 228 GKISAELAEIV----------AKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLR 276
G ISAEL +++ K G PSA+QIR+ G+KGVVAVD K+ LR
Sbjct: 578 GTISAELGDMIWDALCAASPDGKRRGV---KPSAYQIRFLGFKGVVAVDERLQGIKMRLR 634
Query: 277 KSMLKYKSES-----TSLDILANSKYQ-PCFLNRQLITLLSTLGIRDHVFEKKQREGVAQ 330
SM K+K+ + ++I Y C+LNR L+T+L G+ F + Q A+
Sbjct: 635 PSMDKFKARADEEAEAKIEIARAFDYPGTCYLNRPLVTVLEDRGVDKSAFMRLQERIKAE 694
Query: 331 LDAILTDPLKAHEALELMSSGENTN---VLKELLMCG----YKPDVE----PFLLMMLQT 379
+ +A L+ S G +L+ L G Y+ +V+ F+ +LQ
Sbjct: 695 IYTASDSLAQAISVLKANSIGNGYKLGFILQGLKNIGMGLPYEKNVQVLNDSFIDRLLQY 754
Query: 380 FRASNLLELRTRTRIFIQNGRAMMGCLDETGTLES-----------GQVFVQCSASRRRE 428
+ L ++ RI I ++G DE E+ G ++ E
Sbjct: 755 AKNYVLRNIKHDARIPIPESYLLVGIADEGPAYEAEGCENVYILPEGHIYACVQHPDDPE 814
Query: 429 FLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS------LHHMVDCVVFP 482
+ +EG ++V ++P +HPGD++ + A+ P ++ + VV P
Sbjct: 815 PI------------YLEGNIMVTRSPTVHPGDVQQVTAIGKPPEGKICFFRNLKNVVVLP 862
Query: 483 AKGK------RPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTI 536
+ G R + G DLDGD+Y V L+P Y A L RD T+
Sbjct: 863 STGNCGGDCPRSLASCLGGGDLDGDLYQVVKYAPLVPLESQLAGSYESAGTHTLDRDSTV 922
Query: 537 EDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAAT 596
+D+ ++ +YI +D LG++ + H++ AD CLELA+L + AVD+ K G+
Sbjct: 923 DDIIDFIVEYIDSDVLGLLSDRHLMIADQSKYGVNDPSCLELARLCSQAVDYPKNGIPVD 982
Query: 597 IPSGLRVEI--YPDFMEKQDKTC-----YESQRVIGKLYRAVKDIAP 636
R + P++ + +D YES R +G+L+R + P
Sbjct: 983 KGDAPRTLLPYKPNWKQAEDNDSRPTDYYESNRALGELFRNISITEP 1029
>gi|392595557|gb|EIW84880.1| RdRP-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 1235
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 188/652 (28%), Positives = 296/652 (45%), Gaps = 98/652 (15%)
Query: 49 GLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPL 108
G + V +TP+++ GP I+ SNRV+R Y D+FLR+ F DED +
Sbjct: 403 GRFFCYHVTITPTRMLLEGPYITQSNRVIRKYEGFEDHFLRVEFRDEDRLQFR------- 455
Query: 109 ISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADI 168
+ + + +RV L+NGI I + F LA+S+S ++ +S+W ++A +I
Sbjct: 456 -WDREVDGQSFLEDRVGGMLKNGIDIAGRHFTFLAYSSSALRSHSVWFVNEEDFMSATNI 514
Query: 169 RESMGDFRD-IKNVAKYAARLGQSFGSSREALHVDSSDIEII----PDVEVEDD------ 217
R+S+G F + I +KYAAR+G S G R LH+ + + P V++ D
Sbjct: 515 RDSLGVFAETIYQPSKYAARIGVSNGFLRFDLHMFNLPQQAFSATDPSVKISKDQWKEIR 574
Query: 218 ----GITYCFSDGIGKISAELAEIV-------AKNCGFTIYTPSAFQIRYGGYKGVVAVD 266
F+DG+G IS EL +V ++ G PSA+QIR+ G+KGVVA+D
Sbjct: 575 DIKNAQGQLFTDGVGTISRELGRMVWEKLCEARRDRGANSVIPSAYQIRFLGFKGVVAID 634
Query: 267 PT-SSTKLSLRKSMLKY--KSESTSLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEK 322
L R SM K+ ++E ++I+ A K LNR L+ +L G+ F
Sbjct: 635 EQLEGIMLCPRTSMRKFADQTEHAEIEIVRAFDKPNQPNLNRPLVMVLEDSGVDKGAF-- 692
Query: 323 KQREGVAQLDAILTDPLKAHEALELMSSGENTN----------VLKELLMCGY----KPD 368
+ LD + AH+++E + +N +L +L G +
Sbjct: 693 -----MELLDDAVAGARMAHDSVEKFVNVLRSNRLGFSYRLAHILLKLDALGLDLKSNSN 747
Query: 369 VEPFLLMMLQTFRA----SNLLELRTRTRIFIQNGRAMMGCLDETG-----------TLE 413
E L R L +++ RI I ++G DE TL
Sbjct: 748 QESLDTAFLARVRGCVINHVLRDIKHFARIPIPQSYQLVGVADEGPAYVKDGHENVYTLP 807
Query: 414 SGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS-- 471
G++F N E +EG V++++P +HPGD++ + AV P
Sbjct: 808 PGKIFA-------------CIQNFGEEPKWLEGPCVISRSPVVHPGDVQRVYAVGKPPAN 854
Query: 472 ----LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPE 527
H+ + VV P++G RP N G DLDGD+Y + L+ P Y
Sbjct: 855 QLCLFEHLRNVVVLPSQGPRPLANCLGGGDLDGDLYEIIMFQRLLITEHSDPAQYEDRKP 914
Query: 528 KVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVD 587
+ L R TI+DV ++ +YI +D +G+I + H++ AD D R + CL+LA L + AVD
Sbjct: 915 RTLDRPSTIDDVCDFVVEYIHSDVVGLISDKHIIIADQSKDGTRDDLCLKLADLHSQAVD 974
Query: 588 FSKTGVAATI---PSGLRVEIYPDFMEKQDKTC-----YESQRVIGKLYRAV 631
+ K G I P L + PD+ + + YES R +G +YR+V
Sbjct: 975 YPKNGNPVDIRRLPRNL-IPYKPDWHAAEVSSPRSLDYYESDRALGHMYRSV 1025
>gi|302690464|ref|XP_003034911.1| hypothetical protein SCHCODRAFT_255915 [Schizophyllum commune H4-8]
gi|300108607|gb|EFJ00009.1| hypothetical protein SCHCODRAFT_255915 [Schizophyllum commune H4-8]
Length = 1237
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 184/705 (26%), Positives = 321/705 (45%), Gaps = 107/705 (15%)
Query: 56 VLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDED-LDKLYSTVLSPLISSTNE 114
++ TP++ GP SNR++R YP +F+R+ F DED L + +
Sbjct: 433 IIFTPTRTVLEGPYPVQSNRIIRRYPGYEHHFIRVEFRDEDRLAYRWDRTV--------- 483
Query: 115 ERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFAS--RPEL----TAADI 168
+ + ERV L NG +G + F LA+S S ++++S+W EL TA I
Sbjct: 484 DGSQFVRERVGGILANGFKLGGRSFVFLAYSTSALREHSVWYLNEFYHEELGYCITADYI 543
Query: 169 RESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDG----ITYCFS 224
R+S+G F + + YAARL Q+F ++ ++ + + E + D+ Y F+
Sbjct: 544 RDSIGHFPEDSKL--YAARLAQAFTATEPSVKIRRDEWEEMEDLSPPPPPGKRVSPYLFT 601
Query: 225 DGIGKISAELAE-----------------IVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP 267
DG+G IS L + + A CG + +IR+ GYKG+VAVD
Sbjct: 602 DGVGTISRSLGDRIWGKLISERGGDLTQAVAAGRCGSI-----SGRIRFLGYKGMVAVDE 656
Query: 268 -----TSSTKLSLRKSMLKYKSE-----STSLDILANSKY-QPCFLNRQLITLLSTLGIR 316
+ + LR SM K+ S+ ++I + Y F N+ L+T+L LG+
Sbjct: 657 EMDKDNTGIHMRLRPSMRKFDSKEEDMWEADIEIARHFAYPNNMFTNKALVTVLENLGVG 716
Query: 317 DHVFEKKQREGVAQLDAILTDPLKAHEALE---LMSSGENTNVLKELLMCGYK------- 366
FEK Q+ VA ++ I D + L L + ++L + G +
Sbjct: 717 CDQFEKLQQSAVASVERIHDDIDAWRDVLRSNNLCRTFRLAHILDNFVAMGLEMKGTPSR 776
Query: 367 ------PDVE-PFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDE-TGTLESGQVF 418
P + PF + + R + L +++ R I + ++G DE +++G+
Sbjct: 777 PRRAPLPGFDSPFFKKIREVARMAILRDIKHDARFGIPDSYKLVGIADEGPAYIKAGKEN 836
Query: 419 VQCSASRRREFLDNSCNNRS-GELGV-VEGKVVVAKNPCLHPGDMRVLRAVDVP------ 470
V C R +C R+ GE V +EG +++++P H GD++ + A+ P
Sbjct: 837 VYCLGDRE----IYACVQRTEGEDPVWLEGNCIISRSPVTHVGDVQRVHAIGRPPADMLS 892
Query: 471 SLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVL 530
S + + VV P+ G R + SG DLDGD+Y + +L+ Q P+D+ P L
Sbjct: 893 SFGKLKNLVVLPSVGDRSLCSMLSGGDLDGDLYDIIMCEDLLYSQQEKPLDFDPGETFQL 952
Query: 531 ARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSK 590
R T++D+ + +YI +D +G++ + +V AD + C+++AKL + AVD+ K
Sbjct: 953 NRPATVDDICNFIVEYINSDVVGLLSDRLLVIADQSKNGIFDEDCVKIAKLCSQAVDYPK 1012
Query: 591 TGVAATIPSG------LRVEIYPDF-----MEKQDKTCYESQRVIGKLYRAVK------- 632
G+ + +G +R + PD+ + +D Y S + +G+LYR ++
Sbjct: 1013 QGIPVDLENGNLPRPLMRQK--PDWHAAEVIRPRDNDYYRSDKALGRLYRNIQIREVEAL 1070
Query: 633 --DIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTE 675
+ A T + + TK + ++ D + FE+ + FK E
Sbjct: 1071 SEEEAASTTGVNAITKAIERRAEDYLDDSLPFENDLVQLFKRYAE 1115
>gi|409044334|gb|EKM53816.1| hypothetical protein PHACADRAFT_125775, partial [Phanerochaete
carnosa HHB-10118-sp]
Length = 1091
Score = 196 bits (497), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 165/570 (28%), Positives = 276/570 (48%), Gaps = 69/570 (12%)
Query: 63 VYFSGPEISL------SNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEER 116
+ FS +I+L NR+++S D+ F+ +SF +KL SP ++
Sbjct: 35 ISFSPEKITLDRTQFPQNRILQS--DDATKFVLVSF-----EKLRFPDTSPRVAQ----- 82
Query: 117 HTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFR 176
E ++ + G+ + ++ SNSQ++ S ++ + + + +GDF
Sbjct: 83 -----EYMIRFFKAGLFLNGTQYRFYGHSNSQLRSRSCFLRQAENDEELDALIYRLGDFL 137
Query: 177 DIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAE 236
I + +K A R+G F ++ ++ + I D+ V + FSDG G IS + A+
Sbjct: 138 KITSASKRAKRIGLLFSEAKIDWNLQPRWTKDIDDIVVNGE----TFSDGCGLISVKFAK 193
Query: 237 IVAKNCGFTI----YTPSAFQIRYGGYKGVVAVDPTSST-KLSLRKSMLKY-KSESTSLD 290
++K+ YTP+ +QIRY GYKGV+A+DP +T + RKS K+ +++ +
Sbjct: 194 QLSKHKRILYHGRPYTPTVYQIRYRGYKGVLAIDPRLTTDHVHFRKSQKKFTATQNDTFS 253
Query: 291 ILANSK-YQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMS 349
++ +S + LN ++ LL++LGI F KQR G + +D +A A +L+
Sbjct: 254 VVDHSTPFAFARLNNDIVVLLASLGISSDAFLAKQR-GYHEWLQKASDGWEA--AFDLLC 310
Query: 350 SGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLEL-------RTRTRIFIQNGRAM 402
+ + + LL+ G D +P + Q RA EL R R R + R +
Sbjct: 311 AANRYAMAERLLLEGI--DSKP----VRQEIRALQNSELASIRKNDRLRVRTLVPKSRFL 364
Query: 403 MGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMR 462
G D L G+V V+ R+ G + V+V +NPCL+PGD
Sbjct: 365 FGVCDPYSVLREGEVHVRIMIPRK------------GITTLTNVDVLVVRNPCLYPGDCL 412
Query: 463 VLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDY 522
LRAV P+L H++DC+VF ++G+R + SG DLDGD + V WD +L+P DY
Sbjct: 413 KLRAVHHPALDHLIDCLVFASRGRRAAPSMSSGGDLDGDKFTVIWDPDLVPRKVAQSYDY 472
Query: 523 TPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLS 582
PAP + L + +D+ ++FA Y + ++G + H L P A S +C EL L
Sbjct: 473 -PAPPERLNAKIARQDLAKHFAAY-NSITMGRVAALHQKWIRLSPAGAMSAECQELNALY 530
Query: 583 TIAVDFSKTGVAATIPSGLRVEIYPDFMEK 612
++AVD G + IP L V++ + M++
Sbjct: 531 SLAVD----GGSIKIPERL-VKVPQNVMQE 555
>gi|154273921|ref|XP_001537812.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415420|gb|EDN10773.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 652
Score = 195 bits (496), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 136/477 (28%), Positives = 230/477 (48%), Gaps = 80/477 (16%)
Query: 339 LKAHEALELMSSGENTN----VLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRI 394
++ +A+ L+ + + N +L +++ G++ EPF+ +L+ +R + L+ + +I
Sbjct: 2 IQEEQAVHLLQTHVDPNQMTLILADMVRDGFQGSKEPFVSSILELWRTWQIKYLKEKAKI 61
Query: 395 FIQNGRAMMGCLDETGTLES-------GQ-VFVQCSASRRREFLDNSCNNRSGELGVVEG 446
I G ++GC+DET TL+ GQ + S + E + G+ ++EG
Sbjct: 62 AIDEGAFLLGCIDETKTLKGYFRSSRPGQDATYEESVACLPEIFVQVWRHSEGKYVIIEG 121
Query: 447 KVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVC 506
++A+NP LHPGD+RV++AV+ PSLHH+ D VV P G R ++ CSG DLDGD Y V
Sbjct: 122 VCILARNPSLHPGDIRVVKAVNAPSLHHLRDVVVLPQTGDRDISSMCSGGDLDGDDYVVI 181
Query: 507 WDHELIPPLQF-PPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADL 565
WD +++P F PMDY +VL RD+T++D+ +++ +Y+ ND L I AH+ AD
Sbjct: 182 WDQDILPTDWFHNPMDYAAPKPEVLDRDVTVDDITKFYVNYMQNDRLPQIALAHLALADY 241
Query: 566 EPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIG 625
+ ++ +CL+LA L + AVD++K+G+ + L+ +P FME++ + Y
Sbjct: 242 MEEGVKNEKCLQLAALHSAAVDYNKSGIPVKLTRDLKPRRWPHFMERKMRNKY------- 294
Query: 626 KLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMD 685
D+ T+ KT+YD + +M
Sbjct: 295 -------------------------------------ADFATN---LKTQYDADMRRIMA 314
Query: 686 YYGIKTEAEILSGCIM---EMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESDSSHE 742
+ IKTE E+ S ++ EM K + D+ I SL+++ R +K E
Sbjct: 315 QHEIKTELEVWSTFVLSHSEMTKDYKFHEDIGRI---SSSLREKFRIMCYEK-VGGKEFE 370
Query: 743 DVYAKASAWYHVAYHPSYW----GRYKEEGMNRTHF-------LSFPWCIHDKLIEI 788
+ A A Y V W + + ++ +HF +SFPW + L I
Sbjct: 371 HLAPLAVAMYKVTS--EQWEIAVAAHHDVFVDNSHFQERKLPLISFPWILQPILGRI 425
>gi|403377070|gb|EJY88529.1| Suppressor of ascus dominance [Oxytricha trifallax]
Length = 1160
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 170/653 (26%), Positives = 288/653 (44%), Gaps = 90/653 (13%)
Query: 47 DDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS 106
DDG I + +TP+ ++ LSN ++R + D FL++ F +DL+ + S
Sbjct: 313 DDGKIEAYSLTITPTFNIYNLNSQQLSNVILRQNQNYHDKFLKVDFKGDDLEDAGQILQS 372
Query: 107 PLISSTNE--ERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELT 164
+ + ++ V + GI I ++ L SNS +K +++WM +
Sbjct: 373 KYGFKQGKPIKHKNSLSNYVWKPISEGINILHMNYQFLGNSNSSLKQHTIWMLNTSQFED 432
Query: 165 AAD--------------IRESMGDFRDI---------KNVAKYA-ARLGQSFGSSREALH 200
D I+ES G + K + + AR Q F +R
Sbjct: 433 KCDNVVRLYNGMELLQQIQESFGHLPKVVKSENKELNKGITLHTLARAAQLFSGTRHICE 492
Query: 201 VDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYK 260
+ + IE IPD+ FSDG G IS ELA + N + + SA+Q R GG K
Sbjct: 493 LRADQIEYIPDIIKNGKN----FSDGNGCISQELANKI--NAIYNLQDCSAYQFRLGGCK 546
Query: 261 GVVAVDPT-SSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHV 319
G + V+ K+ +RKSM K+++ TSL+I + F NRQLI+L+ GI +
Sbjct: 547 GTLVVNQELQGEKIQIRKSMKKFENSDTSLNIARCATPSQGFFNRQLISLIENQGI---I 603
Query: 320 FE--------KKQREGVAQLDA----ILTDPLKAHEALELMSSGENTNVLKELL------ 361
FE Q + + Q+++ I + L + +S+ TN KE +
Sbjct: 604 FEDIEQILESSDQLKFINQINSFENTIKDEDLIFSQQQAKISNLMLTNTQKEFINYISES 663
Query: 362 -------MCGYKPDVE--PFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTL 412
+ DV+ PF+ + + +++ + RI I++ ++G D L
Sbjct: 664 GQQMFKTFVEKRMDVQSDPFIKNLSKLLSHQITSQIKNKGRIPIKDSAILIGVADYLQVL 723
Query: 413 ESGQVFVQCSASRRREFLDNSCNNRSGEL-GVVEGKVVVAKNPCLHPGDMRVLRAVDVPS 471
+ G++F+Q D N S ++ V+ G V++ ++PCLHP D+ ++AV+
Sbjct: 724 QPGEIFLQVQ--------DPDINEESKDIYEVITGDVIITRSPCLHPNDVMKVKAVNCNQ 775
Query: 472 LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPA---PEK 528
H+ + VVF A G P ++ +G DLDGDV+ + W+ L+ QF P ++
Sbjct: 776 YKHLNNVVVFSANGDEPIQSQLAGGDLDGDVFHIIWNERLVS--QFTPQFLEKQKFDSKR 833
Query: 529 VLARDMTIEDVEEYFAD----YIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTI 584
++ + + AD + N+ LG I + H+ D + S L L
Sbjct: 834 IVGYQAKYTLIPQEIADSLLHFFKNNILGKIDSLHLAICDKQS--PNSQHALSTEFLHQQ 891
Query: 585 AVDFSKTGVAATIP-------SGLRVEIYPDFMEKQDKTCYESQRVIGKLYRA 630
AVDF K G I GL +++PD+M+ + + Y SQ+++G +YRA
Sbjct: 892 AVDFQKHGCKPDIEEYHEIRNEGLDNQMFPDYMQSKSQDSYASQKIMGTIYRA 944
>gi|395327643|gb|EJF60041.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 734
Score = 192 bits (487), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 166/575 (28%), Positives = 254/575 (44%), Gaps = 69/575 (12%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
+ KVLV+ S +++SN+ +S+P+ R + + +D + L+S
Sbjct: 2 LQKVLVSISTAVCQD-GVNISNKEQQSHPET-----RATRLVQDTTRFL------LVSVN 49
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESM 172
+ R +T+ + + + GI + L ++ SQVK + F T + ES
Sbjct: 50 KKARDSTLRQTLARWIYEGIEHNGTVYRFLGYTESQVKAGKLMFFHEGEGWTVERMLESF 109
Query: 173 GDFRDI---KNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGK 229
GD + KYAARLG SF S+ ++L + IPD+ D + SDG G
Sbjct: 110 GDLPGVYLKSGYGKYAARLGLSFSSTVQSLDIPLECAIEIPDLTAPDGSL---HSDGCGM 166
Query: 230 ISAELAEIVAKNCGFTIYTP--SAFQIRYGGYKGVVAVDPT----------SSTK----- 272
I A A+ C P + FQ+R GG KG++ P S T+
Sbjct: 167 IRDSFA---AQLCARHNLPPDTTVFQVRRGGIKGLLVRYPDNEFDVRCRTHSRTRGGHYM 223
Query: 273 LSLRKSMLKYKSESTSLDILA-NSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQL 331
++ R SM KY T L++ NS LN Q + LL TLG+ +F++ + + +
Sbjct: 224 IAYRPSMFKYAGGPTCLELNNHNSPSASARLNVQFMALLLTLGVPFAIFQRLVLDQLDLI 283
Query: 332 DAILTDPLKAHEAL--ELMSSGENTNVLKELLMCGYKPDV-EPFLLMMLQTFRASNLLEL 388
+ILTD KA + + EL ++ E+ M + D+ EP++ L+TF+ + L
Sbjct: 284 GSILTDREKALQYVKGELDAAAEDDFAQGLYAMLLARQDLSEPYVRHKLETFQRKQYITL 343
Query: 389 RTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKV 448
R + + I + + G +DE G L +V V NRSG V+ V
Sbjct: 344 RNKMSLRIPDSAYLFGVVDEAGVLAPNEVHVNLP-------------NRSG---VLVRDV 387
Query: 449 VVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWD 508
+V +NP +PGD R LRAVD PSL H +C+VF + + +G DLDGD+YFVCWD
Sbjct: 388 IVGRNPSYYPGDFRKLRAVDHPSLRHHRNCIVFSSNAAHSIPDTIAGGDLDGDMYFVCWD 447
Query: 509 HELIPPLQFPPMDYTPAPEKVLARDMTIEDVE-----------EYFADYIVNDSLGVICN 557
LIPP + PP + + F + LG++
Sbjct: 448 PCLIPPREAPPFSRPQSATAAAQAGTAPASATRQLSNMPKAAIDTFMQLKFSRLLGMMAK 507
Query: 558 AHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTG 592
+L PD ARS C EL L A+D K+G
Sbjct: 508 EWTRQVELTPDLARSAYCQELVPLIESALDLMKSG 542
>gi|409046078|gb|EKM55558.1| hypothetical protein PHACADRAFT_173705 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1167
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 176/660 (26%), Positives = 295/660 (44%), Gaps = 87/660 (13%)
Query: 56 VLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDED-----LDKLYSTVLSPLIS 110
V +TPS+ SGP +NRV+R Y NFLR+ F DE+ +D++ +
Sbjct: 381 VTITPSRFILSGPFPERNNRVMRKYASHTSNFLRVDFADEEGFQYRMDRVLDS------- 433
Query: 111 STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA----SRPELTAA 166
+ ER L G V+ D+ F+ L +S S +K +++W S +T
Sbjct: 434 ------RRFVRERFGRFLSQGFVLVDRHFDFLQWSQSGLKQHAVWFVKEFQMSHDTVTVD 487
Query: 167 DIRESMGDFRD-------IKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGI 219
I +G F D + A+ AR +F ++ A+ V++ +I + PD+E D
Sbjct: 488 SIIADLGTFHDTPYDPRLMYCPARLGARRALAFTTTDAAVEVEAEEIVVEPDIE--DANG 545
Query: 220 TYCFSDGIGKISAELAEIV-------AKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK 272
F+DG G IS EL V ++ P Q R+ G KG V +
Sbjct: 546 KRSFTDGAGLISEELMTAVWEELRKKSRRYRRAHMMPDVIQHRFQGSKGTSTVSRRLPGR 605
Query: 273 -LSLRKSMLKYKSESTSLDILAN--SKYQPCFLNRQLITLLSTLGIRD-HVFEKKQREGV 328
L +R SM+K+++ + + +A ++ P LNR LI LL L IR + KK ++ V
Sbjct: 606 VLVIRPSMIKFEATGSRMVEVAAAFTRAGPFRLNRPLIMLLEGLRIRGGYEILKKLQDAV 665
Query: 329 AQ--LDAI--LTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASN 384
Q DA L+ + E L + + ++V L +PF +L
Sbjct: 666 IQETKDAANSLSTAARLLEPHGLGTGFKVSSVFANLARLELDSMPDPFFHRVLNVAIYHI 725
Query: 385 LLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVV 444
L +L+ RI + G ++G D G L G+VF + S E + +
Sbjct: 726 LRDLKYHARIPVPGGYTLVGVADPYGYLGEGEVFACVTTSTNAEPI------------FL 773
Query: 445 EGKVVVAKNPCLHPGDMRVLRAVDVPSL------HHMVDCVVFPAKGKRPHTNECSGSDL 498
EG+++++++P +HPGD++++RA+ P H +++ +VF GKRP + DL
Sbjct: 774 EGEMMISRSPTVHPGDVQIVRAIGRPPKGSEFDKHPIMNALVFATIGKRPPASCLGNGDL 833
Query: 499 DGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNA 558
DGDVY EL+P P Y A K + T +D+ ++ ++I +D++G+I +
Sbjct: 834 DGDVYVCTTKEELLPKQTRAPASYDAAARKEVPHQSTQQDMADFVTEFICSDNIGIIASR 893
Query: 559 HVVHAD----LEPDKARSNQCLELAKLSTIAVDFSKTGVAAT---IPSGLRVEIYPDFME 611
+ AD +P CL LA L ++A D+ KTG+ +P PD+
Sbjct: 894 WLELADKRGIFDPG------CLRLAYLHSLATDYPKTGLPVPLEYLPGTDMRRGRPDWSA 947
Query: 612 KQ---DKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITD 668
+ + Y+S R +G+L+R V+ PP + Q+Y+ +E+ + D
Sbjct: 948 PETEGSRRFYQSTRYLGRLFREVRLPVPP-------HPQQPKQTYEERLELGKVTAFFRD 1000
>gi|347841951|emb|CCD56523.1| hypothetical protein [Botryotinia fuckeliana]
Length = 717
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 106/277 (38%), Positives = 157/277 (56%), Gaps = 15/277 (5%)
Query: 52 YVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEID--NFLRLSFVDEDLDKLYSTVLSPLI 109
+ K VTP+ + F+ P + +NRV+R Y E FLR+ F DE + +
Sbjct: 446 FSRKATVTPTSILFNSPTVETTNRVLRHYSKENQEGRFLRVQFTDEKFEGRIN------- 498
Query: 110 SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIR 169
S ++ R+ I+ RV + NGI IGD+ +E LAF NSQ ++N + F L+ DIR
Sbjct: 499 SCADKIRNDAIFTRVFRVISNGIRIGDRHYEFLAFGNSQFRENGAYFFCPSANLSCNDIR 558
Query: 170 ESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGK 229
+ MG F I VAKYAARLGQ F ++R + + DI IPD+ YCF+DG+GK
Sbjct: 559 QWMGTFSHINVVAKYAARLGQCFSTTRAIKGLSAPDIVKIPDIGRG----RYCFTDGVGK 614
Query: 230 ISAELAEIVAKNCGFTI-YTPSAFQIRYGGYKGVVAVDPTSS-TKLSLRKSMLKYKSEST 287
IS LA+++A + PSAFQ R GG KG++ V P + ++ +RKS K+ +
Sbjct: 615 ISPYLAQMIASELKLRVDLAPSAFQFRLGGCKGILVVSPDAKDNEVHIRKSQQKFTAAYN 674
Query: 288 SLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQ 324
L+I+ S++ LNRQ IT+LS LG++D E+++
Sbjct: 675 GLEIIRCSQFSSATLNRQTITILSALGVKDECNEQQR 711
>gi|392587026|gb|EIW76361.1| RdRP-domain-containing protein, partial [Coniophora puteana
RWD-64-598 SS2]
Length = 935
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 177/692 (25%), Positives = 303/692 (43%), Gaps = 129/692 (18%)
Query: 20 EPVRWLEE--QYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVV 77
+P+ L+E YR RR T PA G + + V +TP+++ GP I+ SNRV+
Sbjct: 115 QPLELLDELVNYRASNQPRR--TPPA-----GHFFCSHVTITPTRMLLEGPYITQSNRVI 167
Query: 78 RSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYE----RVLSTLRNGIV 133
R Y D+F+R+ F +E+ K ER + E RV + L+ G+
Sbjct: 168 RKYDQFKDHFIRVEFREENRQKY------------RWEREVDVLEFLTSRVGAKLKGGVD 215
Query: 134 IGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNV-AKYAARLG--- 189
+ ++F +A+S S ++++S+W I + +G+F N AK AAR+G
Sbjct: 216 VAGRRFSFVAYSPSALRNHSLWFVCEEGFRPPVQILKELGNFSATTNQPAKRAARMGVST 275
Query: 190 --------------QSFGSSREALHVDSSDIEIIPDVEVEDDGIT---YCFSDGIGKISA 232
Q+F +++ ++ V I IPD+ + + F+DGIG IS
Sbjct: 276 NACYVPQCTKASFQQAFSATQPSIKVSKDQIVEIPDITGPHNNPARPPHVFTDGIGTISP 335
Query: 233 ELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSL-RKSMLKY----KSEST 287
+L + + + + P AFQ+R G KGV VD K+ R SM K+ +SE
Sbjct: 336 KLRDRICEALSIST-KPDAFQVRCAGLKGVFVVDHQLEGKIMCPRPSMKKFLPLDESEDA 394
Query: 288 SLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVF----------EKKQREGVAQLDAILT 336
++I+ A K FLNR L+ +L G++ F + + V Q A+L
Sbjct: 395 EIEIVRAFDKPGRSFLNRPLVMVLEDRGVKTEGFLELFNDAVADARTAHDSVDQFVAVLQ 454
Query: 337 D-----PLKAHEAL-------ELMSSGE-----NTNVLKELLMCGYKPDVEPFLLMMLQT 379
P + + L ++ +G+ +T+ L + +C K
Sbjct: 455 KHRLGIPYRLDQTLLKLKALGLVLRTGQDQESLDTDFLARVRLCVIK------------- 501
Query: 380 FRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSAS-----RRREFLDNSC 434
L ++R RI I ++G DE GQ ++ R+ +
Sbjct: 502 ---HILRDIRHSARIPIPGSYQLVGVADE------GQAYINAGKENVFTLRQGQIYACIQ 552
Query: 435 NNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVP------SLHHMVDCVVFPAKGKRP 488
+ E ++G V++++P +HPGD++ + A+ P + + + VVF ++G P
Sbjct: 553 DPSDAEPQWLQGTCVISRSPVVHPGDVQRVYAIGKPPENQLCAFARLKNVVVFASRGTLP 612
Query: 489 HTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIV 548
N C G D F+ Q P +Y L R +T++D+ ++ +YI
Sbjct: 613 LAN-CLGGDGHVTRLFITE--------QVDPTEYDAREPYTLDRPVTLDDICDFVVEYIH 663
Query: 549 NDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLR--VEIY 606
+D +G++ + H++ AD D +CLELAK+ + AVD+ K G+ I R +
Sbjct: 664 SDVVGLVADTHIIIADASSDGTLDRRCLELAKMHSQAVDYLKNGIPVDIRRMPRRLIPFK 723
Query: 607 PDFMEKQDKTC-----YESQRVIGKLYRAVKD 633
PD+ E +D++ Y S R +G +YR D
Sbjct: 724 PDWHEAEDESSHPCDYYRSNRALGHMYRTKLD 755
>gi|406695038|gb|EKC98353.1| RNA-dependent RNA polymerase [Trichosporon asahii var. asahii CBS
8904]
Length = 1018
Score = 189 bits (480), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 151/457 (33%), Positives = 226/457 (49%), Gaps = 48/457 (10%)
Query: 50 LIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLI 109
++ + V VTP++V P+ SN V R Y D++D +R+ F DE P
Sbjct: 376 IVMIRTVTVTPTRVLVGPPQPETSNSVTRRYSDKLDAIIRVHFTDEGERLNVQKFTKPAD 435
Query: 110 SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMF----ASRPELTA 165
+ E+ + RV L+ GI + ++ +A S SQ KD++MW RPEL+
Sbjct: 436 DACPEK---GLMARVRRALQYGIEVAGCRYYPVASSGSQQKDHNMWFIDHTVIDRPELS- 491
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSRE-ALHVDSSDIEIIPDVEVEDDGITYCFS 224
MG ++ + VAK+AARLG F +SR AL V SD+ DV D +CF+
Sbjct: 492 ----RWMGQVKE-QVVAKHAARLGLPFSASRAVALKVTVSDLA---DVFRND----HCFT 539
Query: 225 DGIGKISAELAEIVAK---NCGFTIYTPSAFQIRYGGYKGVVAVDP--TSSTKLSLRKSM 279
DG G ++ A+ N T PSA Q R GG KGV+A P + ++ +R S
Sbjct: 540 DGCGVAGIDVMRQAARSMNNKRKTGEAPSALQFRLGGAKGVLAYWPGMAGNDEILMRPSQ 599
Query: 280 LKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLD-----AI 334
K++S L+++ +KYQ FLNRQ I ++S G+ D +FE+ E ++ A+
Sbjct: 600 TKFESRLKELNVVRIAKYQAAFLNRQFINIMSACGVPDALFEQLFVEATQAIEGLPDRAV 659
Query: 335 LTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRI 394
L D L + + E V +++ G+ + P + + + A L +L+ R R+
Sbjct: 660 LRD-LTKDDLVLFQQYTEFPMV--QVIDAGFARN--PMIQDLARLVEARALQDLKWRARV 714
Query: 395 FIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNP 454
+ G ++G DETG L+ G+VFVQ + + E VV G VVV + P
Sbjct: 715 KLDMGVYLIGVADETGLLKEGEVFVQYQVTE------------NDEPVVVTGAVVVCRAP 762
Query: 455 CLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTN 491
LHPGD+R RAVD P L H+ + VVF KG RP N
Sbjct: 763 ALHPGDVRTARAVDHPQLRHLKNVVVFSIKGARPLPN 799
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 29/168 (17%)
Query: 559 HVVHADLEPDKARSN--QCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKT 616
+++H+ L P R N C L DF+KT + + LR E +PDFM K
Sbjct: 799 NILHSHLGPAFLRYNLANCRRL--------DFAKT----ELTTELRPEKWPDFMGK---- 842
Query: 617 CYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDG---FEDYITDAFKYK 673
Y+S++V+G L+R V+ A K ++ +YD + + G + D T K
Sbjct: 843 TYKSKKVLGVLFRRVQ------ADPKFEPSDIRRSAYDPEHWLWGHPQYHDIYTRLMAVK 896
Query: 674 TEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAVK 721
Y+ + M + TE EI+SG I+ K RD+ + ++K
Sbjct: 897 AGYECDMHYAMRRFS-ATELEIVSG-IVTYHKQRKTSRDITEVSESLK 942
>gi|392569009|gb|EIW62183.1| RdRP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 793
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 192/688 (27%), Positives = 295/688 (42%), Gaps = 104/688 (15%)
Query: 119 TIYERVLST-----LRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMG 173
++ +RVL +R G+ I ++ L F+ SQVK + F T + S G
Sbjct: 51 SVEDRVLRNTLPRWVREGVEINGVRYRFLGFTESQVKAGKLMFFREGHGWTVERLLASFG 110
Query: 174 DFRDI---KNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKI 230
D + KY+ARLG SF S+ E+L V +PD++ D + ++DG G I
Sbjct: 111 DLSAVYLKSGYGKYSARLGLSFSSTVESLDVPREAAHEMPDLKAPDGSL---YTDGCGMI 167
Query: 231 SAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP-----------TSSTKLSLRKSM 279
A+ + F T S FQ+R GG KG++ P +SS ++ R SM
Sbjct: 168 RDSFAKKLCTKHNFPPDT-SVFQVRRGGIKGLLVRYPDEKFERLGGTSSSSHLIAYRPSM 226
Query: 280 LKYKSESTSLDILA-NSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDP 338
KY+ T L+I N P LN Q LL +LG+ VF++ ++ V + +I+TD
Sbjct: 227 YKYEDGPTMLEINNHNLPPAPAHLNVQFTVLLLSLGVPVDVFKRLLQDQVDIIGSIVTDR 286
Query: 339 LKA-HEALELMSSGENTNVLKEL--LMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIF 395
KA H + +G + + L ++ EP++ L ++ LR + +
Sbjct: 287 EKALHYIKGELDAGVEDGLNQSLYAMLLAQHDLSEPYVRQRLLKYQEVQYESLRRKMNLR 346
Query: 396 IQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPC 455
I + + G +DE L G+V+V A RSG ++ VVVA+NP
Sbjct: 347 IMDSCYVFGVVDEDSVLAPGEVYVNLPA-------------RSG---ILVRDVVVARNPS 390
Query: 456 LHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPL 515
HPGD+R LRAVD P L H +C+VFP KG R + S DLDGD+YFV W+ LIP
Sbjct: 391 YHPGDIRKLRAVDRPQLRHHRNCIVFPRKGPRSVPDTISSGDLDGDMYFVAWEPTLIPST 450
Query: 516 QFPPMDY-----------TPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHAD 564
+ P++ T A + L DM VE F + LG + N D
Sbjct: 451 EMKPVNRALSMSAAGHTATSASGRQLP-DMPRAAVET-FLQLRYSRLLGRMANEWTKAVD 508
Query: 565 LEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQD---KTC--YE 619
D A + L L A+D KTG D+ QD + C Y
Sbjct: 509 KTVDLANAEFPRRLVPLIEAALDIMKTG--------------DDYWRLQDDFKQLCSRYS 554
Query: 620 SQRVIGKLYRAVKDIAPPTATIKSFTKEV---AMQSYDTD-------MEVDGFEDYITDA 669
+ + G A P +++ EV A ++ D D E ++ Y+ +A
Sbjct: 555 NMHLDGS--------ASPLQVLRAMVPEVNESAPRTLDCDPALVLGHEEPRVWQGYLDEA 606
Query: 670 FKYKTEYDNRLGNLMDYYGIKTEAEILSG-CIMEMAKSFDKKRDLEAIIFAVKSLKKEAR 728
+ ++ L IK +AE SG + A + R+ A + + R
Sbjct: 607 KRVLPRFNRELSG-----AIKLDAECDSGRSFPDFASNDPNDREPRQ---ADRVKRDYQR 658
Query: 729 AWFNKKNESDSSHEDVYAKASAWYHVAY 756
+F + ++ SH+ + +ASAWY+ Y
Sbjct: 659 LYFGGGSFAELSHQRI--RASAWYYYGY 684
>gi|170577358|ref|XP_001893975.1| RNA dependent RNA polymerase family protein [Brugia malayi]
gi|158599674|gb|EDP37189.1| RNA dependent RNA polymerase family protein [Brugia malayi]
Length = 261
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 111/269 (41%), Positives = 156/269 (57%), Gaps = 30/269 (11%)
Query: 380 FRASNLLELRTRTRIFIQN--GRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNR 437
F+ L +L + +I I + GR+M G +DETG L+ GQ+FVQC+ R +L +
Sbjct: 3 FKYHYLEKLIAKIQIQIPSHLGRSMFGVMDETGQLQWGQIFVQCT---RNIWLKTP--SP 57
Query: 438 SGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSD 497
S +++GKV++ KNPC+ GD+RV AVD+P LHH+VD VVFP G RPH +E +GSD
Sbjct: 58 SAAKFILKGKVMLTKNPCIVAGDVRVFEAVDIPELHHLVDVVVFPQHGPRPHPDEMAGSD 117
Query: 498 LDGDVYFVCWDHELIPPLQFPPMDYTPAP--EKVLARDMTIEDVEEYFADYIVNDSLGVI 555
LDGD Y V WD ELI PP+D+T + K++ ++ ++F +YI DS+G I
Sbjct: 118 LDGDEYSVIWDQELIFEHNEPPLDFTKSTSGNKIIDEAQVDLEMRKFFVNYIKQDSIGSI 177
Query: 556 CNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGL-------------- 601
NA +V+ADL S C+ +AK + AVDF KTG A P+ L
Sbjct: 178 SNAFLVNADLY--GITSEVCINIAKKHSKAVDFPKTGDA---PAPLTRQWTHDKNGNMLP 232
Query: 602 --RVEIYPDFMEKQDKTCYESQRVIGKLY 628
R E +PDFM K + Y S R++G+LY
Sbjct: 233 PERAERWPDFMCKNHEPSYISSRLVGQLY 261
>gi|302698389|ref|XP_003038873.1| hypothetical protein SCHCODRAFT_64962 [Schizophyllum commune H4-8]
gi|300112570|gb|EFJ03971.1| hypothetical protein SCHCODRAFT_64962 [Schizophyllum commune H4-8]
Length = 984
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 173/573 (30%), Positives = 268/573 (46%), Gaps = 99/573 (17%)
Query: 48 DGLIYVN-KVLVTPSKVYFSGPEISLSNRVVRSYPDEI-DNFLRLSFVDED-LDKLYSTV 104
DG ++ + V+VTP+ + GP SNR++R Y + D FLR+SFV+E L +
Sbjct: 403 DGSVFDSLHVIVTPTTMILEGPFPERSNRIIRMYDAKYHDCFLRVSFVEEGRLQYRFDRE 462
Query: 105 LSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMF------A 158
+ + T I ER+ L+ G+ I KFE LA+S S +K++++W
Sbjct: 463 V---------DGRTFIRERIGPLLKKGLHIAGHKFEFLAYSQSALKEHAVWFVKPFRPDG 513
Query: 159 SRPELTAADIRESMGDFRDIKN---VAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVE 215
R ++ AA I +GDF K+ A+YAARL Q+F ++ ++ V++ +I D+
Sbjct: 514 QRADVNAATIIAGIGDFSTSKDRFCPARYAARLSQAFTATDASVFVEAEEIGYHDDISTS 573
Query: 216 DDGITYCFSDGIGKISAELAE-------IVAKNCGFTIYTPSAFQIRYGGYKGVVAVD-P 267
D Y F+DG+G +S E+A K + TP++FQ+R G KG+++VD
Sbjct: 574 DGA--YHFTDGVGTMSKEMARDTWTELRRTRKRARKSKGTPASFQVRLMGSKGMLSVDYK 631
Query: 268 TSSTKLSLRKSMLKYKS-ESTSLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQR 325
+ LR SM+K+++ +S +L+I A + +LNR LI LL LG+ F K Q
Sbjct: 632 LRGRAVCLRPSMIKFEAPDSLNLEIARAFDRPGKYYLNRPLIMLLEGLGVPYETFLKYQ- 690
Query: 326 EGVAQLDAILTDPLKAHEALE----------LMSSGENTNVLKELLMCG--YKPDVEPFL 373
D + D +A E+LE L +S +VL L G + P + F
Sbjct: 691 ------DLAVRDAHRATESLEHAARMLEAFGLGTSFRLPSVLLNLEKLGIDHLPG-DAFY 743
Query: 374 LMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVF--VQCSASRRREFLD 431
ML+ L L+ RI I ++G D L G+VF V+ S R E+L
Sbjct: 744 DRMLEFAINHVLRVLKNHARIPIPGAYTLVGVADVHRYLAEGEVFACVKEVDSNRIEYL- 802
Query: 432 NSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVP------SLHHMVDCVVFPAK- 484
EG ++++++P +HPGD++V+RA+ P + + + VVF K
Sbjct: 803 -------------EGDILISRSPTIHPGDVQVVRAIGRPPAGSPFAQEPLANTVVFSVKG 849
Query: 485 -------------------GKRPHTNECSGSDLDGDVY-FVCWDH---ELIPPLQFPPMD 521
G RP + G DLDGDVY +C D E P P
Sbjct: 850 MLLGPFQARHEQHLTVSHSGSRPLPSMLGGGDLDGDVYNLICLDTTHPEFRPARTCDPAS 909
Query: 522 YTPAPEKVLARDMTIEDVEEYFADYIVNDSLGV 554
Y AP KVL R ++DV ++ D++ D G
Sbjct: 910 YAAAPRKVLDRPANMDDVADFVLDFMSFDVRGT 942
>gi|70608336|gb|AAZ04410.1| putative RNA-dependent RNA polymerase SDE1/SGS2/RDR6 [Nicotiana
benthamiana]
Length = 172
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 87/163 (53%), Positives = 111/163 (68%), Gaps = 3/163 (1%)
Query: 349 SSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDE 408
S E N +L G+KP EP L ML + RAS L +LR + RIF+ +GR +MGCLDE
Sbjct: 10 SCAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDE 69
Query: 409 TGTLESGQVFVQCSA-SRRREFLDNSCN--NRSGELGVVEGKVVVAKNPCLHPGDMRVLR 465
G LE GQ F+Q S+ S F+ + N + L V++G V++AKNPCLHPGD+R+L
Sbjct: 70 LGELEQGQCFIQVSSPSLESCFVKHGPNFSDIKKNLQVIKGLVIIAKNPCLHPGDVRILE 129
Query: 466 AVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWD 508
AVDVP LHH+ DC+VFP KG RPH ++ SGSDLDGD+YFV WD
Sbjct: 130 AVDVPGLHHLYDCLVFPQKGDRPHPDQASGSDLDGDLYFVTWD 172
>gi|241633128|ref|XP_002410399.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
gi|215503416|gb|EEC12910.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
Length = 756
Score = 179 bits (455), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 139/382 (36%), Positives = 202/382 (52%), Gaps = 30/382 (7%)
Query: 25 LEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEI 84
L E +RK+ L+ P V G V +V VTPS V+F P + NRV+R + E
Sbjct: 391 LPELFRKFCLA---YVPPKVP--RGSCLVRRVFVTPSCVFFLPPNVHSENRVLRCFDAEY 445
Query: 85 DNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAF 144
LR+SF D++L L +++ EE TI V LR GI +G ++F+ LA
Sbjct: 446 A--LRVSFRDDNLQHLSHSLM---FHRQKEEMVDTI---VAKFLRTGIEVGGRQFKFLAS 497
Query: 145 SNSQVKDNSMWMFA-SRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHV-- 201
S SQ++D+ +W++A R TA IR MGDF I NVAK AR+GQ F S+ E++ V
Sbjct: 498 SCSQLRDHGVWLYAMDRQGFTAESIRRWMGDFSAIPNVAKKMARMGQCFSSTEESVKVPL 557
Query: 202 DSSDIEIIPDVEV---EDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGG 258
++E +PDV G + FSDGIG IS L + V K PSA QIRY G
Sbjct: 558 HGGNMEEVPDVVGGVHPVSGKEFTFSDGIGMISTSLMQKVCKKLDLA-EVPSAIQIRYAG 616
Query: 259 YKGVVAVDP-TSSTKLSLRKSMLKYK-SESTSLDILANSKYQPCFLNRQLITLLSTLGIR 316
YKG++ V+P KL LR SM K+ S S SL+++ S + +LNR LIT+L LG+
Sbjct: 617 YKGMLCVNPELRGDKLVLRDSMRKFSCSNSDSLEVIKVSAPRTVYLNRFLITILEQLGVP 676
Query: 317 DHVFEKKQREGVAQL-DAILTDPLKAHEALELMSS--GENTNVLKELLMCGYKPDVEPFL 373
VF Q++ + DA++ + AL ++ + G L+ L G+ +PF+
Sbjct: 677 SRVFLCLQQKMMLTFADALVCE----STALRVLCTYVGGTLPFLR-LQQNGFCLARDPFV 731
Query: 374 LMMLQTFRASNLLELRTRTRIF 395
++L T S + + R R ++F
Sbjct: 732 RLLLYTVYRSTMGKRRCRPQLF 753
>gi|347841952|emb|CCD56524.1| hypothetical protein [Botryotinia fuckeliana]
Length = 461
Score = 179 bits (454), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 165/300 (55%), Gaps = 14/300 (4%)
Query: 429 FLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRP 488
F+ + + V+EG +V +NP LHPGD+RV++AV++P+LHH+ D VVFP G+R
Sbjct: 26 FIQVPDRENTTQYNVIEGICLVGRNPSLHPGDLRVVQAVNIPALHHLRDVVVFPQSGERD 85
Query: 489 HTNECSGSDLDGDVYFVCWDHELIPP-LQFPPMDYTPAPEKVLARDMTIEDVEEYFADYI 547
+ CSG DLDGD +FV WD +L P PM Y L R + + D++++F Y+
Sbjct: 86 VPSMCSGGDLDGDDFFVIWDKDLQPTEWNCEPMSYAALDPVALKRPVVVTDLQKFFVKYM 145
Query: 548 VNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYP 607
NDSL I +AH+ AD + + +CL+LA+L + AVD+ KTG AT+ L +P
Sbjct: 146 KNDSLPSIAHAHLAQADYQKQGIKDPKCLKLAELHSKAVDYVKTGQPATMQKYLAPPKWP 205
Query: 608 DFMEKQDKTC---YESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFED 664
FMEK + Y SQ+++G+L+ V+ + + F K + +++Y+ D
Sbjct: 206 HFMEKIHQPASKQYHSQKILGQLHDKVESVDFVPQYEEPFDKRI-LRAYELDNAT----- 259
Query: 665 YITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAK---SFDKKRDLEAIIFAVK 721
+ A + KT+YD + ++ IKTE E+ S I+ K + + D+ I A+K
Sbjct: 260 -LKAARQTKTKYDTAMRRILAQQDIKTEFEVWSTFILSKPKVGSDYKLQEDMAVITGALK 318
>gi|403358455|gb|EJY78878.1| RNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1079
Score = 179 bits (453), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 150/571 (26%), Positives = 265/571 (46%), Gaps = 46/571 (8%)
Query: 73 SNRVVRSYPDEIDNFLRLSFV--DEDLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRN 130
SN+V+R + +D FL++ F+ +++L+ L + I + R + + + L
Sbjct: 259 SNQVIRRHFTNVDKFLKIKFLGGNQELELLNDQYMR--IKGDYQIRRNLVTNLLWNILGY 316
Query: 131 GIVIGDKKFETLAFSNSQVKDNSMWMFASRPE----LTAA--------DIRESMGDFRDI 178
GI I +K F+ L +SNSQ+KD S W E L +A I ++ +
Sbjct: 317 GISINNKTFKFLGYSNSQLKDRSFWFLRQAVENDLKLNSAIMSMYGIVAIPSNLNKKEYL 376
Query: 179 KNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVED--DGITYCFSDGIGKISAELAE 236
V ++ ++ SS + ++ + I++I D+ D D + F+DG G IS +L+
Sbjct: 377 GEVLNCHGKVANNYTSSDFIIKLERNQIQVINDIVRHDYQDNRDFNFTDGNGLISQKLSN 436
Query: 237 IVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP-TSSTKLSLRKSMLKYKSESTSLDILANS 295
++ ++ G S +Q+R GG KG + VD K+ LR SM+K K+ T L+I+
Sbjct: 437 MINQHYGLK--NCSVYQVRIGGAKGTLTVDQRLKGKKVILRSSMIKLKNNITDLNIVQCG 494
Query: 296 KYQPCFLNRQLITLLSTLGI-RDHVFE--KK--QREGVAQLDAILTDPLKAHEALELMSS 350
K + NRQ+I L G+ ++ FE KK Q + QL + ++ L +
Sbjct: 495 KAGLGYSNRQVIALFEHDGVHKEEFFELIKKNIQYQFFKQLSQGQAQSVSYYD-LAFLEQ 553
Query: 351 GENTNVLKELLMCGYKPDV---EPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLD 407
V KP++ +P ++ + + ++ + RI+++N ++G D
Sbjct: 554 HLTHLVGAFKYFIRKKPEILRYDPLFQSIVNQLKQEIMRQITEKGRIYMKNSVVLLGVPD 613
Query: 408 ETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAV 467
G L+ ++F+Q E + + V+ G VVV +NP LHP D+R L AV
Sbjct: 614 FLGILQENEIFLQIPKYNDLE--------QGEQYQVIRGDVVVTRNPALHPNDIRKLVAV 665
Query: 468 DVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPA-P 526
D P ++ + VVF +G P + +G D DGD Y + W+ ++ + Y P
Sbjct: 666 DRPEFRYLRNAVVFSTQGSIPPSTMMAGGDHDGDRYLIIWERSIVNNFLANQIRYKYFDP 725
Query: 527 EKVLAR---DMTIEDVEEYFADYIVNDSLGVICNAHVVHAD-LEPDKARSNQCLELAKLS 582
++++ + ++ + + Y+ +D LG+I + H+ D L P+ + L L L
Sbjct: 726 KRLMKKGRYNIQPQMIASSIVKYVRSDYLGLIDSMHLGLCDYLGPN---HDFTLYLEYLH 782
Query: 583 TIAVDFSKTGVAATIPSGLRVEIYPDFMEKQ 613
AVD+SK G A I L I ++ KQ
Sbjct: 783 RQAVDYSKHGKAPNIKQFLLERIRLNYDRKQ 813
>gi|400596583|gb|EJP64354.1| RNA dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 527
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 136/434 (31%), Positives = 201/434 (46%), Gaps = 54/434 (12%)
Query: 388 LRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRRE-----FLDNSCNNRSGELG 442
++ + RI I+ +MGC+DETGTL + + S + + FL S +
Sbjct: 1 MKEKCRIQIEKSAFVMGCVDETGTLRGHSIQTEGSRGKNKAVLPQIFLQMSDRKYGNKTT 60
Query: 443 VVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDV 502
+++G + +NP LH GD+RV+ AVD P L H+ D VVFP+KG R + SG DLDGD
Sbjct: 61 IIQGVCFIGRNPSLHAGDIRVVEAVDTPCLRHLKDVVVFPSKGDRSLPSILSGGDLDGDE 120
Query: 503 YFVCWDHELIPPL-QFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVV 561
YFV WD L+P + PPM TP + L R + ++D+ + Y+ ND LG + AH+
Sbjct: 121 YFVIWDSTLVPKIWNSPPMHSTPVTPQDLERGVEVDDLRNFAVKYMKNDCLGFVAVAHLA 180
Query: 562 HADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSG-LRVEIYPDFMEKQDKTCYES 620
HAD CL+LAKL + AVD+ KTGV A + +P FM++ T Y S
Sbjct: 181 HADAL--GLNHPICLQLAKLHSQAVDYLKTGVPAEWNRARYQPSKWPHFMQRNSCT-YPS 237
Query: 621 QRVIGKLYRAVK----DIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEY 676
+ +GKLY V D P + F + Q +D E+ + A K +Y
Sbjct: 238 HKALGKLYNRVAEENFDYVP--SCEDEFDSRIT-QRFDFTDEI------LASARNLKQQY 288
Query: 677 DNRLGNLMDYYGIKTEAEILSGCIM-------------EMAKSFD--KKRDLEAII---- 717
D + L+ + + TE E+ SG M ++ + FD K+R E I
Sbjct: 289 DVAVRRLLKQFRVATEFELYSGWAMSKPAVGSDYKLQEDLGQQFDTVKQRFREMCIQEAG 348
Query: 718 FAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSF 777
A S +E A K E D + + + + + Y P +SF
Sbjct: 349 IAGGSKLEELVAAIYKVTE-DEAKDFLAEAEAEGEALEYSP-----------KAMPLISF 396
Query: 778 PWCIHDKLIEIKRG 791
PW H L++I G
Sbjct: 397 PWIFHWVLVKIAMG 410
>gi|401885409|gb|EJT49528.1| hypothetical protein A1Q1_01432 [Trichosporon asahii var. asahii
CBS 2479]
Length = 1000
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 145/457 (31%), Positives = 223/457 (48%), Gaps = 59/457 (12%)
Query: 50 LIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLI 109
++ + V VTP++V P+ SN V R Y D++D +R+ F DE P
Sbjct: 376 IVMIRTVTVTPTRVLVGPPQPETSNSVTRRYSDKLDAIIRVHFTDEGERLNVQKFTKPAD 435
Query: 110 SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMF----ASRPELTA 165
+ E+ + RV L+ GI + ++ +A S SQ KD++MW RPEL+
Sbjct: 436 DACPEK---GLMARVRRALQYGIEVAGCRYYPVASSGSQQKDHNMWFIDHTVIDRPELS- 491
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSD 225
MG ++ + VAK+AARLG V SD+ +V +G +CF+D
Sbjct: 492 ----RWMGQVKE-QVVAKHAARLGL----------VTVSDL-----ADVFRNG--HCFTD 529
Query: 226 GIGKISAELAEIVAK---NCGFTIYTPSAFQIRYGGYKGVVAVDP--TSSTKLSLRKSML 280
G G ++ A+ N T PSA Q R GG KGV+A P + ++ +R S
Sbjct: 530 GCGVAGIDVMRQAARSMNNKRKTGEAPSALQFRLGGAKGVLAYWPGMAGNDEILMRPSQT 589
Query: 281 KYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLD-----AIL 335
K++S L+++ +KYQ FLNRQ I ++S G+ D +FE+ E ++ A+L
Sbjct: 590 KFESRLKELNVVRIAKYQSAFLNRQFINIMSACGVPDALFEQLFVEATQAIEGLPERAVL 649
Query: 336 TDPLKAHEALELMSSGENTNV-LKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRI 394
D K +L+ + T + +++ G+ + P + + + A L +L+ R R+
Sbjct: 650 RDLTKD----DLVLFQQYTEFPMVQVIDAGFARN--PMIQDLARLVEARALQDLKWRARV 703
Query: 395 FIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNP 454
+ G ++G DETG L+ G+VFVQ + + E VV G VVV + P
Sbjct: 704 KLDMGVYLIGVADETGLLKEGEVFVQYQVTE------------NDEPVVVTGAVVVCRAP 751
Query: 455 CLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTN 491
LHPGD+R RAVD P L H+ + VVF KG RP N
Sbjct: 752 ALHPGDVRTARAVDHPQLRHLKNVVVFSIKGARPLPN 788
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 19/139 (13%)
Query: 586 VDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFT 645
VDF+KT + + LR E +PDFM K Y+S++V+G L+R V+ A K
Sbjct: 790 VDFAKT----ELTTELRPEKWPDFMGK----TYKSKKVLGVLFRRVQ------ADPKFEP 835
Query: 646 KEVAMQSYDTDMEVDG---FEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIME 702
++ +YD + + G + D T K Y+ + M + TE EI+SG I+
Sbjct: 836 SDIRRSAYDPEHWLWGHPQYHDIYTRLMAVKAGYECDMHYAMRRFS-ATELEIVSG-IVT 893
Query: 703 MAKSFDKKRDLEAIIFAVK 721
K RD+ + ++K
Sbjct: 894 YHKQRKTSRDITEVSESLK 912
>gi|405952888|gb|EKC20645.1| Putative RNA-dependent RNA polymerase SHL2 [Crassostrea gigas]
Length = 1226
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 173/291 (59%), Gaps = 20/291 (6%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
V ++++TP+K F E NR++R Y D F+R+ + DED +K+ +TV S L+
Sbjct: 930 VGRMILTPTKTVFLPKEPVFQNRILREYGP--DFFIRVVYRDEDFEKM-NTVQSCLLDD- 985
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESM 172
+ + + L++G I ++ +E L SNSQ++++S W F ++T+ IR +
Sbjct: 986 -------VLKIMKQFLKDGFRIRNRHYEFLGCSNSQLREHSFWFFHPHDDITSESIRNNS 1038
Query: 173 GDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISA 232
G+F + VA Y +R G F S+R + VD S +I D +V+ D YCF+DGIG+IS
Sbjct: 1039 GEFSKDRCVASYVSRFGLCFSSTRRTVDVDESC--LIYDDDVKKD--EYCFTDGIGRIST 1094
Query: 233 ELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT---SSTKLSLRKSMLKYKSESTSL 289
+LA+ VA + PSAFQIR+GG KGVVA DPT + L +RKSM+K++S+S +L
Sbjct: 1095 KLAKKVAAELHISP-IPSAFQIRFGGCKGVVAQDPTLGDDADVLVIRKSMIKFESKSNNL 1153
Query: 290 DILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQL-DAILTDPL 339
+IL ++ LNRQ+ITLLS LGI D VF Q + + + D +L D +
Sbjct: 1154 EILGETRPGRLHLNRQVITLLSGLGIPDEVFLGLQEKMLLDIADMLLYDKV 1204
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 160/296 (54%), Gaps = 27/296 (9%)
Query: 2 EYIEHAL--ETLFHLRECCYEPVRWLEEQYRKY-----VLSRRFLTSPAVALDDGLIYVN 54
+YIE+ ET ++ + +E+Q+ + ++ +R LT+ L V
Sbjct: 313 KYIEYLFQKETSLMIQVLYNLAIELIEKQFFHFKNELDLMKKRILTNFDHDLPPHYSRVA 372
Query: 55 KVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNE 114
++++TP++ F E NR+VR Y + D F+R+ F DED +K+ STV S + +
Sbjct: 373 RMVLTPTRSLFLPKEPMFQNRIVREYGE--DFFIRVVFRDEDFEKI-STVQSDAVEN--- 426
Query: 115 ERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGD 174
I ER+ + +G I + +E L SNSQ++++S W F R ++T+ +IR S G+
Sbjct: 427 -----ILERMKTFFEDGFQIQTRDYEFLGCSNSQLREHSFWFFHPRDDITSENIRNSSGE 481
Query: 175 FRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAEL 234
+ VA Y +R G F S+++ + VD ++ DV+ ++ YCF+DGIG+IS +L
Sbjct: 482 LSTERCVASYVSRFGLCFSSTKKTVDVDKGCVQYTDDVQNDE----YCFTDGIGRISTKL 537
Query: 235 AEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLD 290
AE V+ + PSAFQIR+GG KGVVA DPT L +L KS T+ D
Sbjct: 538 AEKVSNELNISP-VPSAFQIRFGGCKGVVAQDPT----LGNDADVLNNKSNETNQD 588
>gi|218188371|gb|EEC70798.1| hypothetical protein OsI_02249 [Oryza sativa Indica Group]
Length = 307
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 169/293 (57%), Gaps = 22/293 (7%)
Query: 520 MDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELA 579
MDY+P K L R ++ D+ ++F +++++LG ICNAHVVHADL A +C+ LA
Sbjct: 1 MDYSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAMDEKCIHLA 60
Query: 580 KLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTA 639
+L+ AVDF KTG A +P L+ ++YPDFM K+D Y+S++++G+LYR++++ +
Sbjct: 61 ELAATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSIQE----AS 116
Query: 640 TIKSFTKEVAMQS---YDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEIL 696
++EV + YD D+EV G D++ A++ K YD +L L+ Y ++TEAE++
Sbjct: 117 NGDVVSQEVCTPNDLPYDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQYRVRTEAELV 176
Query: 697 SGCIMEMAKSFDKKR-DL-EAIIFAVKSLKKEARAWF----NKKNESDSSHEDVY--AKA 748
+G I + K+ KK+ D+ + + A +L+KE ++ F + + E D +++ KA
Sbjct: 177 TGHITSLVKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIDDDEKNLLYEMKA 236
Query: 749 SAWYHVAYHPSY----WGRYKEEGMNRTHFLSFPWCIHDKLIEIK---RGKQR 794
SAWY V YHP + G +G LSF W D L IK GK R
Sbjct: 237 SAWYQVTYHPKWVEKSRGILGPDGEEIPASLSFAWIPVDYLARIKLRCHGKVR 289
>gi|400596582|gb|EJP64353.1| RNA dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 590
Score = 173 bits (439), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 100/267 (37%), Positives = 153/267 (57%), Gaps = 17/267 (6%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
V K +TP+ + + P + SNRV+R Y + D FLR+ F+ E +
Sbjct: 300 VLKANITPTSLKLNLPNVESSNRVMRKYNNLHDRFLRVQFLSETESNRIAK--------- 350
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESM 172
+ + +++R+L L GI IG++ +E LAF NSQ+++ S+ F ++ DIR+ +
Sbjct: 351 DRYNNDDVWKRLLRALHKGIRIGERTYEFLAFGNSQLREGSVTFFCPTAHVSCDDIRKWL 410
Query: 173 GDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISA 232
G+F I+NVAK+ AR+GQ F ++RE V I I D+E + + CF+DG+G ISA
Sbjct: 411 GNFDHIRNVAKFGARIGQCFSTTREVRGVRVPTIRHIDDIEAKGE----CFTDGVGIISA 466
Query: 233 ELAEIVAKNCGFTIY-TPSAFQIRYGGYKGVVAVDPTSSTK---LSLRKSMLKYKSESTS 288
LA++V I PSAFQ R GG KGV+AV P K + LRKS +K+ +E+ +
Sbjct: 467 LLAQLVVDELELDIVGNPSAFQFRMGGAKGVLAVWPREYAKHMEVCLRKSQIKFSTEANT 526
Query: 289 LDILANSKYQPCFLNRQLITLLSTLGI 315
L+I+ +K LNRQ+IT+L LG+
Sbjct: 527 LEIIKCAKTSTATLNRQIITILEHLGV 553
>gi|389748392|gb|EIM89569.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1274
Score = 173 bits (439), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 183/708 (25%), Positives = 312/708 (44%), Gaps = 131/708 (18%)
Query: 46 LDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDE----IDNFLRLSFVDED-LDKL 100
L D + + +TP+++ GP + +NRV+R Y + + NF+R+ F DED
Sbjct: 418 LPDSYFMCHHITITPTRMLLEGPYPTQNNRVIRGYQEYDSTLVGNFVRVDFRDEDRFQYR 477
Query: 101 YSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKD-NSMWMF-- 157
++ + + + +RVL L+ G +G + F+ A+S+S ++D +++W
Sbjct: 478 FNRAV---------DGGYLLEKRVLDFLKPGFSLGGRHFDFFAYSSSSLRDSHALWAIHP 528
Query: 158 -----ASRP-----ELTAADIRESMGDFRDIKNV-AKYAARLGQSFGSSREALHVDSSDI 206
+ P +TA IR S+G+F + N +K AAR+GQ+ ++ ++ +
Sbjct: 529 FDVPVGASPTILCGHITADMIRHSLGNFSTVINQPSKLAARVGQTCSATTPSVRLKREQW 588
Query: 207 EIIPDVEVEDDGITYCFSDGIGKISAELA-EIVAKNCGFTI------YTPSAFQIRYGGY 259
+ D V+ Y +DG+G IS++L EI A C P AFQIR+ G+
Sbjct: 589 D---DDMVDLGESPYEHTDGVGTISSDLRDEIWATLCSKGWDKDKDRAKPDAFQIRFLGF 645
Query: 260 KGVVAVD-PTSSTKLSLRKSMLKY-----KSESTSLDIL-ANSKYQPCFLNRQLITLLST 312
KGVV VD + ++ LR SM K+ + + S +I+ A + LNR I +L
Sbjct: 646 KGVVVVDYCLTGIRMRLRPSMKKFDVDEEEKNNASFEIVRAFDRPNRYSLNRSTIMVLED 705
Query: 313 LGIRDHVFEKKQR----------EGVAQLDAILT--------DPLKAHEALELMSSGENT 354
G+ F K Q + +A A L D E L ++ +
Sbjct: 706 RGVPIDTFMKLQEKAKETIFTAGDSIASFVAFLRINRLGIGFDLPLILERLAVLKDSSHK 765
Query: 355 NVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLES 414
NV++ PFL +L+ S L +L+ + +I + G ++G DE
Sbjct: 766 NVVRSF--------ENPFLERVLRFAMNSRLRDLKHKAQIPVPGGFKLVGVADE------ 811
Query: 415 GQVFVQ-----CSASRRREFLDNSC--NNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAV 467
GQ ++Q S + +E +C + E ++G + ++P PGD++ +RA+
Sbjct: 812 GQAYIQEGLDPSSVATLKEGEIYACVRDGHKAEPKFLKGDCFITRSPVNDPGDIQRVRAI 871
Query: 468 DVPS------LHHMVDCVVFPA-KGKRPHTNECSGSDLDGDVY----FVCWDHELIPPLQ 516
P + + VV PA G R + G D+DGD++ F C D L+P L
Sbjct: 872 GKPPEDKVCFFRGLQNVVVLPAVPGTRSLASCLGGGDVDGDMFDIVGFDC-DSNLLPTLH 930
Query: 517 FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICN----------AHVVH---- 562
PP +Y L T +DV + +YI +D LG++ + VH
Sbjct: 931 KPPAEYKSVGTYTLDHPATEDDVWSFVVEYIQSDVLGLLSERLLTIAGETLSSSVHRPTN 990
Query: 563 -ADLEPDKARSNQ----CLELAKLSTIAVDFSKTGVAATI-----------PSGLRVEIY 606
D+ PD++ CLELAKL + AVD+ K G+A P+ R E+
Sbjct: 991 GTDVSPDQSEDGMSNPLCLELAKLCSQAVDYPKNGIAVETDRIPYPPTRFRPNWARAEV- 1049
Query: 607 PDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYD 654
++++ Y+S R +G+L+ V ++ P A + + +S D
Sbjct: 1050 ---SDEREGDFYQSDRALGRLFENV-ELLPTNAASNARSDSTHQRSSD 1093
>gi|4768840|gb|AAD29638.1|AF117611_1 DosA protein [Dictyostelium discoideum]
Length = 1069
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 161/576 (27%), Positives = 259/576 (44%), Gaps = 115/576 (19%)
Query: 208 IIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP 267
+IPD+ + G + F++G G I +L E++ + + T A+QIR GG KGV+ ++
Sbjct: 1 MIPDI-ISKGG--HNFTEGCGFIGFKLVELINQQNNYNSST-CAYQIRLGGSKGVLVLNE 56
Query: 268 T-SSTKLSLRKSM----LKYKSES-----TSLDILANSKYQPCFLNRQLITLLSTLGIRD 317
L +R SM L YKS +L+I++ S C LNRQ ITLLS G+ D
Sbjct: 57 NIDEMSLQIRPSMSKFELDYKSGQLDGGHKTLEIVSASTTSRCKLNRQAITLLSNAGVED 116
Query: 318 HVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELL------MCGYKPDVEP 371
F + + Q L D N+ KELL + Y+ +
Sbjct: 117 STFLQMLEVELNQNAQTLVD----------------VNLSKELLGDFFQHITEYELFNDY 160
Query: 372 FLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLD 431
++ +L S L++++ + I ++ R ++G D +GTL V+++ + +D
Sbjct: 161 YIRSILLKLYKSKLIKIQDKCWIEVKESRNLLGVCDTSGTLPEDTVYIEV---EELDPID 217
Query: 432 NSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTN 491
N + V+ G+V V KNPC HPGD+R L+A+D P L+ + + F G P+
Sbjct: 218 NLMKPK-----VIIGRVAVLKNPCHHPGDVRFLKAIDHPPLNGKRNVLFFSTNGMVPNFK 272
Query: 492 ECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIE--------DVEEYF 543
+CSGSDLDGD YFV +D LI + E L + T+ D ++Y
Sbjct: 273 QCSGSDLDGDRYFVIYDQTLI-------REDLITHEPYLGEEQTVNPLIGEEDSDDDQYE 325
Query: 544 AD-------------------------YIVN---DSLGVICNAHVVHADLEPDKARSNQC 575
D Y+ N LG I N H+ +D+E K S
Sbjct: 326 NDDNDITIPTSTTTKSTNNTPTKLSDIYLKNVDKSKLGTISNTHLAISDIE--KVSSINS 383
Query: 576 LELAKLSTIAVDFSKTGVAATIP----SGLRVEIYPDFMEKQDKTCYE-----------S 620
+++A I VD KT V IP S L+ + YP FM+ ++ + +E S
Sbjct: 384 IKVAIQCAIEVDSVKTSVHGIIPRDVKSILKEKGYPHFMKIKNGSTFEYKGGNQRKYYIS 443
Query: 621 QRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYIT-DAFKYKTEYDNR 679
RVIGK+Y D A F E + D + V G+++Y+ + F +Y ++
Sbjct: 444 DRVIGKIY----DSAENLLWFGDFLPEAKV---DESLLVQGYKEYLNHENFTTYMDYKSK 496
Query: 680 LGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEA 715
+ +++ +G ++E ++L G M F +K +EA
Sbjct: 497 INSILRRFGAQSEEDLLIGF---MDPQFSEKLSIEA 529
>gi|443927204|gb|ELU45719.1| RNA-directed RNA polymerase [Rhizoctonia solani AG-1 IA]
Length = 1713
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 131/444 (29%), Positives = 208/444 (46%), Gaps = 46/444 (10%)
Query: 128 LRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAAR 187
L G+ I +++ SNSQ++ S W+ A+ + E + D I N+AK A R
Sbjct: 92 LTKGLFINGQQYRFYHHSNSQLRSRSCWLRAASSDEELDRRIEKLCDVSKINNIAKRAKR 151
Query: 188 LGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAK-----NC 242
+G F + ++ + + IPD+ + ++ FSDG G IS +++AK +
Sbjct: 152 IGLLFSGAEIDWDLNPALTKDIPDITIAEE----LFSDGCGLISRRFMQLLAKKKKIVHR 207
Query: 243 GFTIYTPSAFQIRYGG-----------YKGVVAVDP----TSSTKLSLRKSMLKYKSES- 286
G+ YTPS QIR +GV+A+ P + + R SM K K+ +
Sbjct: 208 GYR-YTPSVIQIRAVCSFVSHNVTILIIQGVLAIHPQLDQAAQHHVHFRDSMRKLKTGAD 266
Query: 287 TSLDILANSK-YQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL 345
+ ++ SK YQ LN +I LLS LGI + + + KQ +++ D A+
Sbjct: 267 NTFSVVDYSKPYQFARLNNDIIVLLSALGITNEMLKTKQDAYFKWIESANKD---MSSAM 323
Query: 346 ELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRT---RTRIFIQNGRAM 402
+S+ ++ + + M G + + Q + + T R+RIF+ R +
Sbjct: 324 NFLSALGKDDLAERVFMDGLDEEQVQAQIRNAQVEEVNAFQKPETGKDRSRIFLLQSRFL 383
Query: 403 MGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMR 462
G D G LE G+V V+ R+ G + ++V +NPCLHPGD+
Sbjct: 384 FGVCDPYGLLEEGEVHVRIMEPRK------------GATTLSNIDLMVVRNPCLHPGDIL 431
Query: 463 VLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDY 522
LRAV L H+VDC+VF KGKR SG DLDGD + V WD +++P DY
Sbjct: 432 KLRAVHHTGLDHLVDCIVFSGKGKRAAPAMSSGGDLDGDRFTVVWDPDIVPRTIAQSYDY 491
Query: 523 TPAPEKVLARDMTIEDVEEYFADY 546
A +V R +T +D+ +FA+Y
Sbjct: 492 PAAKTQVNLR-ITRKDLATHFANY 514
>gi|769816|emb|CAA83245.1| unnamed protein product [Phanerochaete chrysosporium]
Length = 953
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 152/506 (30%), Positives = 243/506 (48%), Gaps = 65/506 (12%)
Query: 30 RKYV-LSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFL 88
R+YV + RR L P + + V VTP+ GP SNRV+R YPD D F+
Sbjct: 410 REYVPVKRRRLRGPP---NQDIFDCLHVTVTPTTHRLDGPYPERSNRVMRMYPDYHDCFV 466
Query: 89 RLSFVDE-DLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNS 147
R++FVDE DL + + + I RV L NGI I + FE LA+S S
Sbjct: 467 RINFVDETDLQFRFDREV---------DGRAFIKRRVGEILTNGIDIAGRHFEFLAYSQS 517
Query: 148 QVKDNSMW-----MFASRPELTAADIRESMGDF-RDIKNV---AKYAARLGQSFGSSREA 198
+K++++W M + + A I +GDF RD + + A+Y AR+ Q+F ++ +
Sbjct: 518 ALKEHAVWFVKEFMLPNGTIVNARTIIAGLGDFTRDHQLIYCPARYGARISQAFTATDSS 577
Query: 199 LHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELA-----EIVAKNCGFTIYT-PSAF 252
+ V ++ I D+E T+CF+ G+G +S +LA ++ A+ G T P A
Sbjct: 578 VKVQPDEVFEIDDIEGPTG--TWCFTSGVGTMSVQLARDIWKKLAARRGGSRWKTYPRAL 635
Query: 253 QIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSESTSLDI---LANSKYQPCFLNRQLIT 308
QIR+ G KG+++VD T + + LR SM+K+++ + DI A ++ P +LNR LI
Sbjct: 636 QIRFRGSKGMLSVDHTLQGRAICLRPSMIKFEAPESLTDIEIARAFNRPGPFYLNRPLIM 695
Query: 309 LLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGEN---TNVLKELLMCGY 365
++ LG+ VFE+ Q V + + KA LE G + T++ L G
Sbjct: 696 IMEHLGVPYEVFEELQDMAVEEAQESVESLEKAARLLETFGLGASYRLTSIFLSLHKLGV 755
Query: 366 KPDVEPFLLMMLQTFRASNLL-ELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSAS 424
P + F +++L EL+ RI + N ++G D G LE +VF C
Sbjct: 756 GPLTGDEFWQKMMDFAINHVLRELKHHARIPVPNAWNLVGVADVHGYLEQDEVF-GCIYP 814
Query: 425 RRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVP----SLHH--MVDC 478
LD +G + ++G +V ++P +HPGD++V + P H + +
Sbjct: 815 -----LDG-----TGPI-YLDGPTLVTRSPTIHPGDVQVAHGIGRPPRGSPFEHESLRNT 863
Query: 479 VVFPAKGKRPHTNECSGSDLDGDVYF 504
+VF KG S ++ D V+F
Sbjct: 864 LVFSTKG--------SSANFDRLVFF 881
>gi|389743114|gb|EIM84299.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1120
Score = 166 bits (421), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 150/493 (30%), Positives = 217/493 (44%), Gaps = 50/493 (10%)
Query: 128 LRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDI---KNVAKY 184
+ GI ++ L ++ SQ+K MF T +R + G + KY
Sbjct: 94 VHEGIQQDGHRYTFLGYTESQLKATQFMMFEGDKAATQKLLR-TFGKLDAVYQKSGYGKY 152
Query: 185 AARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGF 244
AARLG SF S+ L S + IPD+ D + SDG G I + I+ N G
Sbjct: 153 AARLGLSFSSTAVGLDAPHSRVTEIPDLVARDGTL---MSDGCGVIRDSVLAIICANRGI 209
Query: 245 TIYTPSAFQIRYGGYKGVVAVDPTS---------STKLSLRKSMLKYKSESTSLDILANS 295
T QIR+ G+KG++ P + +++R SM KY TSL+I A S
Sbjct: 210 RRDT-HCIQIRWNGHKGMLVGYPDAFCTDVLHMGENWIAVRPSMKKYDGRLTSLEINAVS 268
Query: 296 K-YQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALE------LM 348
LN+ I LL T GI + E + +LD +TD KA E LE L
Sbjct: 269 HPAGSARLNKMYILLLLTAGIPAATIHELLNEQLEKLDLFMTDRDKAIEILEGTDSAQLD 328
Query: 349 SSGENTNV-LKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLD 407
+ GE N L E L+ + EP++ ++ ++ LR + I ++ + G +D
Sbjct: 329 ADGEGFNQELFEGLLASHDLS-EPYVKWLMLKYQKLRYRRLREKICIDVKLSWLLFGIVD 387
Query: 408 ETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAV 467
E+ TL+ +V++ R+ GV+ G VVV + P PGDMRV +AV
Sbjct: 388 ESRTLKPDEVYIHMP---HRD-------------GVIIGWVVVCRTPAYAPGDMRVFKAV 431
Query: 468 DVPSLHHMVDCVVFPAKGKRPH--TNECSGSDLDGDVYFVCWDHELIPPLQ--FPPMDYT 523
P L H +C+VF P T+ SG DLDGD ++VC D L+P FPP
Sbjct: 432 SKPELLHHTNCIVFSGHESCPRSVTDMISGGDLDGDKFWVCSDPRLVPKRSNIFPPSQRA 491
Query: 524 PAPEKVLARDMTIEDVEEYFADYIV----NDSLGVICNAHVVHADLEPDKARSNQCLELA 579
V +R +++D+ + D V LG I H PD A S + +LA
Sbjct: 492 SPAAAVSSRKNSLKDMPQASIDTFVIQHGTSLLGQISRKWTAHTANHPDLAASEESRKLA 551
Query: 580 KLSTIAVDFSKTG 592
AVD +KTG
Sbjct: 552 SCFEAAVDLTKTG 564
>gi|449550168|gb|EMD41133.1| hypothetical protein CERSUDRAFT_111700, partial [Ceriporiopsis
subvermispora B]
Length = 595
Score = 165 bits (418), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 135/476 (28%), Positives = 205/476 (43%), Gaps = 54/476 (11%)
Query: 128 LRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDI---KNVAKY 184
+ G+ + ++ F+ + VK+ + F T ++E GD ++ KY
Sbjct: 65 VHEGVTVASARYAFFGFTENHVKEGRVICFREDESWTVRHVKEQFGDLDEVYQKHGYGKY 124
Query: 185 AARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGF 244
AARLG SF S+ ++L V + +PD+ D + +DG G I A +
Sbjct: 125 AARLGLSFSSTVQSLDVAPEEALEVPDLRAPDGSL---HTDGCGMICDSFAAEICHAHEL 181
Query: 245 TIYTPSAFQIRYGGYKGVVAVDP----------------TSSTKLSLRKSMLKYKSESTS 288
T + FQ+R GG KG++ P S K++ R SMLKY T+
Sbjct: 182 PADT-TVFQVRRGGIKGLLVRYPDDKFAELCAKHRGIPTPPSIKMAYRPSMLKYSGGPTA 240
Query: 289 LDILANSKY-QPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALEL 347
L++ S+ LN Q I +L TLGI FEK +E + + I D A L+
Sbjct: 241 LELNDCSRCPTSARLNAQFIIMLLTLGINIETFEKMLKEHLDIIGCITHDRDVALRYLKG 300
Query: 348 MSSGENTNVLKE---LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMG 404
+ + + L+ Y EP++ L+ F+A L + + ++ + G
Sbjct: 301 ELDASDHDTFGQDVYALLLAYHDLSEPYVEWKLKQFQALQYKSLYKKLNLRVEESCYVYG 360
Query: 405 CLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVL 464
+DE G LE +VF+ N G GVV G V+VA+NP PGD R L
Sbjct: 361 VVDEDGILEGDEVFI----------------NLPGRTGVVLGNVLVARNPSYSPGDFRKL 404
Query: 465 RAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP-LQFPPMDYT 523
RAV P L H C+VF K + + DLDGD YFV WD LIP + P
Sbjct: 405 RAVHDPRLKHHKHCIVFSRKASHSIPDSMASGDLDGDEYFVTWDPTLIPSHMATPHQRAL 464
Query: 524 PA--------PEKVLARDMTIEDVE-EYFADYIVNDSLGVICNAHVVHADLEPDKA 570
PA P ++ R T+E+ + F + + LG + N+ + A+ P A
Sbjct: 465 PASATRASVSPTRI-TRQCTLEEAAIDTFIENAFSRLLGKMANSWSILAEATPQLA 519
>gi|393244916|gb|EJD52427.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 813
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 154/497 (30%), Positives = 224/497 (45%), Gaps = 47/497 (9%)
Query: 123 RVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDI---K 179
R+L +R+G+ G +F L F+ SQ+ ++ F T + E G+ +
Sbjct: 72 RLLELMRHGLETGGSRFSFLGFTESQLGAGALLFFEEGDGYTIDSMLEYFGELEPVFVKS 131
Query: 180 NVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVA 239
KYAARLG SF S++ + SD+ I D D +T +DG G I LA +
Sbjct: 132 GYGKYAARLGLSFSSTKPVYELSPSDLISIDDRFALDGTVT---TDGCGLIKDSLARQLC 188
Query: 240 KNCGFTIYTPSAFQIRYGGYKGVVAVDP---------TSSTKLSLRKSMLKYKSESTSLD 290
G T + FQ+R GG KGV+A P S ++ R SM KY+ ++
Sbjct: 189 ILLGIA-NTTAIFQVRIGGIKGVLARYPDDVFERLAQNSVAVIAYRPSMFKYRGGPQIVE 247
Query: 291 ILANSKYQP--CFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALE-- 346
+ SK +P LN Q I LL TLG+ VF++ + ++D I +D A LE
Sbjct: 248 LNKISKTRPDSARLNIQFILLLLTLGVGVEVFQQLLSIQLERIDNIFSDRKSAIAFLENA 307
Query: 347 ----LMSSGENTNVLKELLMCGYKPDV-EPFLLMMLQTFRASNLLELRTRTRIFIQNGRA 401
L S+ + LM D+ EP L L T R L L+ + +I +Q+
Sbjct: 308 YDVTLDSNATRSLYQDAFLMLHAGFDLSEPQLQWSLNTLRTQMLKRLQDKLQIEVQDSAM 367
Query: 402 MMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGK-VVVAKNPCLHPGD 460
+ G DET +LE +V+V R G G G+ VVV KNP PGD
Sbjct: 368 LFGVCDETNSLEEDEVYVNLP-------------ERGGGFG---GRTVVVMKNPAYAPGD 411
Query: 461 MRVLRAVDVPSLHHM-VDCVVFPAKGK--RPHTNECSGSDLDGDVYFVCWDHELIPP--L 515
+RV +AVD PSL +C+VF + + R ++ SG DLDGD +FV WD LIP
Sbjct: 412 IRVFKAVDRPSLRICPTNCIVFASSARCGRSPADKMSGGDLDGDTFFVSWDSSLIPSRVA 471
Query: 516 QFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQC 575
P P + R + + + F LG + N+ A+ D A+ C
Sbjct: 472 SPQPRPKPIPPLQPPPRGPILAEAAKTFIALHNKMLLGQMSNSWKETAENSADIAQDKYC 531
Query: 576 LELAKLSTIAVDFSKTG 592
L+L + A+D +KTG
Sbjct: 532 LQLVPMIEAALDITKTG 548
>gi|402468934|gb|EJW04010.1| hypothetical protein EDEG_01704 [Edhazardia aedis USNM 41457]
Length = 2457
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/194 (44%), Positives = 112/194 (57%), Gaps = 11/194 (5%)
Query: 442 GVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGD 501
++ G +VVAKNPCLHPGD+R+ AV L H+ D +VF KG RP N CSGSDLDGD
Sbjct: 35 NILFGSIVVAKNPCLHPGDVRIAEAVYKKELEHLQDVIVFSGKGSRPLFNMCSGSDLDGD 94
Query: 502 VYFVCWDHELIPPLQFPPMDYTPAPEKVLARDM-TIEDVEEYFADYIVNDSLGVICNAHV 560
Y V WD LIP P Y +L ++M T+ DV ++ Y+ D LG+I AH+
Sbjct: 95 QYAVIWDKRLIPTKTVDPDTYDNTT--ILMKEMVTLNDVINFYVRYMKEDELGLIATAHL 152
Query: 561 VHADLEP--DKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCY 618
+D DK +C+ LAKL VDF KTG A +P L YPDFM Q + Y
Sbjct: 153 ATSDRLSIMDK----ECITLAKLFNKGVDFPKTGYVARLPDDLLPSSYPDFM--QQNSQY 206
Query: 619 ESQRVIGKLYRAVK 632
+S +++GK+YR K
Sbjct: 207 KSDKILGKMYRRCK 220
>gi|255635133|gb|ACU17923.1| unknown [Glycine max]
Length = 290
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/262 (36%), Positives = 137/262 (52%), Gaps = 19/262 (7%)
Query: 547 IVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIY 606
+VN+ LG ICNAHVVHAD A +C+ LA+L+ AVDF KTG T+P L+ ++Y
Sbjct: 1 MVNEHLGAICNAHVVHADSSDYGALDEKCIHLAELAATAVDFPKTGKLVTMPPHLKPKLY 60
Query: 607 PDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYI 666
PDFM K+ Y S++++G+LYR +KD YD D+EV G D+I
Sbjct: 61 PDFMGKERHQSYRSKKILGRLYRRIKDAYDEDIDAPYLNFVTGGIPYDKDLEVPGSADFI 120
Query: 667 TDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRD--LEAIIFAVKSLK 724
DA++ K YD +L L+ Y +K E E+++G I M K +K+ E + + +LK
Sbjct: 121 ADAWEQKCSYDGQLSGLLGQYKVKREEEVVTGQIWSMPKYNSRKQGELKERLKHSYSALK 180
Query: 725 KEARAWFNKKN----ESDSSHEDVY--AKASAWYHVAYHPSYWGR-----------YKEE 767
KE R F K N E ++++ KASAWY V YHP + + + +
Sbjct: 181 KEFRHTFEKLNSDVGELSEEEKNLFYEQKASAWYQVTYHPEWVKKSLDLQDKSSENQEAD 240
Query: 768 GMNRTHFLSFPWCIHDKLIEIK 789
+ T LSFPW D L K
Sbjct: 241 SLGSTVMLSFPWIAVDYLARTK 262
>gi|397614211|gb|EJK62661.1| hypothetical protein THAOC_16717 [Thalassiosira oceanica]
Length = 540
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 112/374 (29%), Positives = 180/374 (48%), Gaps = 69/374 (18%)
Query: 398 NGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLH 457
N +MG +DETG LE Q+F+Q S + NN+ V+ G+V+VAK+P +H
Sbjct: 8 NSEVLMGGIDETGLLEENQIFIQVSKHTKE-------NNKPA-YEVITGRVMVAKHPVIH 59
Query: 458 PGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQF 517
PGD+R+L AVD+P L + + V+F G RP TN SGSDLDGD + +CWD L P
Sbjct: 60 PGDLRMLEAVDLPELRGVKNVVLFSQHGHRPVTNMMSGSDLDGDEFAICWDRRLFLPKTV 119
Query: 518 PPMDY---TP-----APEKVLARDMTI---EDVEEYFADYIVNDSLGVICNAHVVHADLE 566
M Y +P P VL + + E + +F ++ ND+LG I + HA ++
Sbjct: 120 EAMSYDSHSPDETGLLPLSVLEEEFGVTTNEALVRHFINHAKNDNLGKISMLWLDHA-ID 178
Query: 567 PDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRV-EIYP--DFMEKQDKT-CYESQR 622
A ++CLELA L +I+VDF K+ + A +P L + +P + EK + + +
Sbjct: 179 KGSASCSECLELAALHSISVDFPKSSIPAKLPDRLVLGSTFPRAHWREKAGGSPSFHCRS 238
Query: 623 VIGKLYRAV--------------------KDIAPPTATIKSFTKEVAMQSYDTDM----- 657
++G+LY V D + ++ MQ + +
Sbjct: 239 IVGRLYDNVLHELKVMSDQDESSFNWGGGSDKDAMAGRYRDRNGQIIMQGNEEKILRAKK 298
Query: 658 -------------EVDG-FEDY------ITDAFKYKTEYDNRLGNLMDYYGIKTEAEILS 697
+DG +DY + A + + ++++ L LM+ Y IK+E E+++
Sbjct: 299 SLFDPSLVHRLGWSMDGKSQDYDLHRCLLDFALEQRNDFEDELVELMNQYHIKSEGEVVT 358
Query: 698 GCIMEMAKSFDKKR 711
GC++E K +KR
Sbjct: 359 GCVLEYHKLHQRKR 372
>gi|440493516|gb|ELQ75976.1| RNA-directed RNA polymerase QDE-1, partial [Trachipleistophora
hominis]
Length = 714
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/201 (44%), Positives = 117/201 (58%), Gaps = 14/201 (6%)
Query: 435 NNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECS 494
NNR+ + GVV G +VAKNPCLHPGD+R + V L H + +VF KG RP N CS
Sbjct: 249 NNRTAD-GVVVGNAIVAKNPCLHPGDIRKVHCVYKKELLHYKNVLVFSRKGTRPTFNMCS 307
Query: 495 GSDLDGDVYFVCWDHELIPPLQFPP----MDYTPAPEKVLARDMTIEDVEEYFADYIVND 550
GSDLDGD+YF+ WD LIP + P + E ++ +DM +F + D
Sbjct: 308 GSDLDGDLYFISWDKRLIPRNEHFPQSYQSSSYLSKEHIVTQDMV-----NFFTRFAKED 362
Query: 551 SLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFM 610
LG I NAH+V++D+ Q L+LA L ++ VDF KTG A +P L E+YPDFM
Sbjct: 363 ELGKISNAHLVYSDIH--GITDPQALKLAYLFSMGVDFPKTGYIARLPQNLEPEVYPDFM 420
Query: 611 EKQDKTCYESQRVIGKLYRAV 631
E+ Y+S RV+G LYR V
Sbjct: 421 ERGRS--YKSGRVMGVLYRRV 439
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 98/188 (52%), Gaps = 25/188 (13%)
Query: 234 LAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILA 293
+A ++AK + +TP+AFQIR+ GYKGVV V L LRKSM K+ S T L+++
Sbjct: 1 VAHMIAKKLRLS-FTPTAFQIRFAGYKGVV-VRAHIPHDLILRKSMRKFNSTYTILEVVN 58
Query: 294 NSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGEN 353
S+ C+LNRQ+I +L LGI H F Q E + Q+ + A+ N
Sbjct: 59 YSQPIECYLNRQIIMILEGLGIPKHNFISLQNEYLMQM----------YRAI-------N 101
Query: 354 TNVLKELLMCGYKPDVEPFLLMML-QTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTL 412
+++ + G V+ ++ + FR E+ + RIF+ NG +MG +DE G L
Sbjct: 102 HSLISKYCRIGGVALVDRMSGAVIGRLFR-----EMCAKGRIFVSNGVVLMGVIDEEGVL 156
Query: 413 ESGQVFVQ 420
+VFV+
Sbjct: 157 GENEVFVR 164
>gi|391343492|ref|XP_003746043.1| PREDICTED: uncharacterized protein LOC100902078 [Metaseiulus
occidentalis]
Length = 1371
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 194/766 (25%), Positives = 324/766 (42%), Gaps = 84/766 (10%)
Query: 46 LDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVL 105
L L V + +V PSK P + + ++RS E + + D+D +L
Sbjct: 391 LPQDLYLVKRAIVCPSKTIVKPPTVVRVSALLRSVDPE--KVMLVDVRDDDGTRLR---- 444
Query: 106 SPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRP--EL 163
++ NE R T I + ++ GI I K + L S SQ +D S W +A
Sbjct: 445 ---FNTQNEAR-TFIQVSIAEKIKRGIKIAGKTYYFLGNSKSQAEDFSFWAYAIEKGDTD 500
Query: 164 TAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCF 223
T + +RE +G N+A+ A F + A+ +D S + E ED F
Sbjct: 501 TISSVRERLGI---TGNLARRIAVQDLVFAEALGAVSIDPSWVS----EESEDVPAASDF 553
Query: 224 SDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKY 282
GIG+IS V +NC ++ SA ++ +GG +G + DP+ +++ RKS
Sbjct: 554 KHGIGRISEAALRTVVENCHWSRTLCSAIRVIHGGRRGTLVYDPSLEGSRIIYRKSQTVI 613
Query: 283 KSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREG-VAQLDAILTDPLKA 341
+SE ++L ++ S+ + +R LI+ LS+ D + E+ E + L +LT+PL
Sbjct: 614 RSEDSTLYLIGRSEMKNAAFDRTLISTLSSKA--DGLTEEFSVEDFLTPLYELLTEPLSL 671
Query: 342 HEALELMSSGENTNVLKELL-----MCGYKPDVEPFLLMMLQTFRASNLLELR--TRTRI 394
+ + VL + + GY + + Q R L LR + +
Sbjct: 672 YSTGARVKRVAAEPVLDHIFRKGEDLYGYDKRGDG---LFRQAVRCKALKALRDLKKLKQ 728
Query: 395 FIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNP 454
+ N +M +DE G LE G+VF+Q S+ G+L V+ G +V+A+
Sbjct: 729 HMTNAYEIMPVVDELGLLEEGEVFIQVSSP-------------GGDLRVLSGDLVLARKD 775
Query: 455 CLHPGDMRVLRAVDVP----SLHHMVDCVVFPAK-GKRPHTNECSGSDLDG--DVYFVCW 507
+H + R + AV+ P +L H+ +CVV P+K G RP + G D+ +
Sbjct: 776 AMHLEEFRRVTAVNRPDVVGALGHLFNCVVLPSKGGSRPLEFLAREASYAGESDIILIAS 835
Query: 508 DHELIPPLQFPPMDYTPAPEKVLARDMTIE---DVEEYFADYIVNDSLGVICNAHVVHAD 564
+ P F D P +A ++ D E ++ +Y+ S AD
Sbjct: 836 HPDEEPAFLFKRND--PPRSTSIAVGSEVDASCDTETHYFNYLAYVSFNDFEEVFCALAD 893
Query: 565 LEPDKARSNQCLELAKLSTIAVDFSKTGV-AATIPSGLRVEIYPDFMEK-QDKTCYESQR 622
P A S C+ + + + + G A +P +V +P F+EK D+ Y S R
Sbjct: 894 SLPQHASSESCIRVGVQRRLLDKYRRGGREVAPLP---KVVNFPHFLEKISDRRTYCSAR 950
Query: 623 VIGKLYRAVKDIAPPT-ATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLG 681
+G +YR + I + T+++ Q ++ V+G E + A + ++ L
Sbjct: 951 PLGHIYRKGRLIDTEYFEDTQMMTEDLTFQH---ELRVEGSEAFAEIAARDIRQFRGDLE 1007
Query: 682 NLMDYYGIKTEAEILSGCIME---MAKSFDKKRDLEAII-FAVKSLKKEARAWFNKKNES 737
+ YGI + E+L+G I S +++ D+EA + VK L R F K E
Sbjct: 1008 GIASLYGISVD-EVLTGTIFSDRGQHSSNERRSDIEAAVKLQVKHLALICRRKFKKGMEK 1066
Query: 738 DSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHD 783
S E V K SA+Y + G Y +FPW + D
Sbjct: 1067 ASELE-VLQKISAYYVASRDFPKDGGY-----------AFPWMLPD 1100
>gi|302682736|ref|XP_003031049.1| hypothetical protein SCHCODRAFT_57049 [Schizophyllum commune H4-8]
gi|300104741|gb|EFI96146.1| hypothetical protein SCHCODRAFT_57049 [Schizophyllum commune H4-8]
Length = 739
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 134/460 (29%), Positives = 222/460 (48%), Gaps = 55/460 (11%)
Query: 57 LVTPSKVYFSGPEISLSNRVVRSYP-DEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEE 115
++TP+++ GP SNRV+R + D+FLR+SF +E + L + E
Sbjct: 297 IITPTRIILQGPYPERSNRVIRMFDVQHHDSFLRVSFTEE----------TKLQYRFDRE 346
Query: 116 RHTT--IYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMF----ASRPELTAADIR 169
T + RV S L+NG+VI ++FE LA+S S +K+++++ E+ AA +
Sbjct: 347 VDTASFVRSRVGSILKNGLVIAGREFEFLAYSQSALKEHTVYFVKPFRVGDTEVNAASVI 406
Query: 170 ESMGDFR---DIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDG 226
S+G+F D A+YAARL Q+F ++ ++ V+ ++ II D+ D Y F+DG
Sbjct: 407 ASIGNFEKSSDRLCPARYAARLSQAFTATDASIVVNPAETHIISDISTPDG--MYHFTDG 464
Query: 227 IGKISAELA-----EI--VAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK-LSLRKS 278
+G +S E+A E+ K P+AFQIR+ G KG+++VD T + + LR S
Sbjct: 465 VGTMSREMAVDAYTEVNRYRKRAMNGRGIPAAFQIRFMGSKGMLSVDHTLQGRVVCLRDS 524
Query: 279 MLKYKSESTSLDILANSKYQPC--FLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILT 336
M+K+ + +A +P +LNR LI LL LG+ F + Q V +
Sbjct: 525 MIKFDCPNNRNLEIARVFDRPAKYYLNRPLIMLLEGLGVPYETFLQHQDAAVQDAYSSTE 584
Query: 337 DPLKAHEALELMSSGENTNVLKELLMCGYKPDVE-----PFLLMMLQTFRASNLLELRTR 391
KA LE + G + + LL ++E F ML+ L EL+
Sbjct: 585 SLTKAARMLEALGLGTSFRLPSLLLNLVKLCNIENLGDNKFYSRMLEFAIHHVLRELKNH 644
Query: 392 TRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVA 451
RI I ++G D G L+ ++F A + S E+ +EG +++
Sbjct: 645 ARIPIPGAYTLVGVADVHGYLKEWEIFACIKA------------HDSDEVIYLEGDILIP 692
Query: 452 KNPCLHPGDMRVLRAVDVP------SLHHMVDCVVFPAKG 485
++P +HPGD+++ RA+ P + + + VVF +G
Sbjct: 693 RSPSIHPGDVQIARAIGRPRPGSPFAKEPLANTVVFSVRG 732
>gi|299740231|ref|XP_001838952.2| hypothetical protein CC1G_05505 [Coprinopsis cinerea okayama7#130]
gi|298404148|gb|EAU82883.2| hypothetical protein CC1G_05505 [Coprinopsis cinerea okayama7#130]
Length = 1214
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 190/718 (26%), Positives = 293/718 (40%), Gaps = 155/718 (21%)
Query: 42 PAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLY 101
P D L + V TPS+ GP + NR++R Y D D+F+R+ F DED
Sbjct: 339 PRQDQDSKLFECHHVTCTPSRFILVGPNPTGFNRIIRKYRDYTDHFIRVDFRDEDGQYFR 398
Query: 102 STVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMF---- 157
S S + T + R+ L+ GI I + FE LA+S+S +K +S W
Sbjct: 399 S--------SFEVDASTLVKTRIGGVLKGGITIAGRHFEFLAYSSSSMKVHSTWFLNPFE 450
Query: 158 -----ASRPELTAADIRESM-----GDFRDIKNVAKYAARLGQSFGSSREALHVDSSDI- 206
R +TA IRE + + + ++ +KYAAR+ +F +S VD + +
Sbjct: 451 FKDRTGQRIRVTAQRIREDIIPDIPANVQLMRTPSKYAARIALAFTTSES---VDGARLK 507
Query: 207 ---------EIIP---------------------DVEVEDDGITY----------CFSDG 226
+I P D + E+ Y F+DG
Sbjct: 508 RDEWVGPFPDIYPAVSHVKVRREEEQEEEGEGESDTDEEESADEYDPQFKMVKLPPFTDG 567
Query: 227 IGKISAELAEIVAKNC----GFTI---YTPSAFQIRYGGYKGVVAVDP--TSSTKLSLRK 277
+G IS EL + + K G + + PSA+ +R GYKGVVAVDP L LRK
Sbjct: 568 VGSISKELNDRIWKEYYEKRGLEVHPNFYPSAWMLRMLGYKGVVAVDPEMEGPIHLRLRK 627
Query: 278 SMLKYKSESTSLD------------------ILANSKYQPCF--LNRQLIT------LLS 311
SM K++S L N Y P F L+R LIT L+
Sbjct: 628 SMHKFESLEDDLSQHSEVRIEIAEIYDKPGLCYLNRFYLPFFPHLHRLLITPVLFRPLVM 687
Query: 312 TLGIRDH---VFEKKQREGVAQ---LDAILTDPLKAHEALELMSSGENTNVLKELLMCGY 365
+ D VFE+ QR VA +DA + + + L + + T +L+ + G
Sbjct: 688 MFDLHDRPLEVFEELQRMAVADAMTIDASIDQFSRLMQMHGLGNPFKITYLLEHVEALGL 747
Query: 366 KPD----VEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTL--ESGQVFV 419
+ V P + + + +R RI + ++G DE + G V
Sbjct: 748 SLEELDQVSPLWKALRDVAFKTVMAGIRYEARIPVPKSWVLVGVADEGPAYKGQPGYENV 807
Query: 420 QCSASRRREFLDNSC------NNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS-- 471
C L +C ++ E +EG VV +NP + PGD++ +RA+ P
Sbjct: 808 YC--------LPENCIFVCIQEDQDSEPEWLEGDCVVTRNPVVRPGDIQKVRAIGKPPRG 859
Query: 472 ----LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPL---QFPPMDYTP 524
+ + VVF ++G+R + +G DLDGD Y V L+ + P +
Sbjct: 860 VKCLFRDLKNVVVFSSQGRRSLPSCLAGGDLDGDKYAVIQYEGLLTETYRREADPDEAKD 919
Query: 525 APEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTI 584
+ K AR + ED+ ++F Y+ D L ++ ++C LAKL +
Sbjct: 920 SKFKDKARKVKPEDICDFFVQYVNRDVLDPFNEKGY-------NQQGDDECSILAKLCSQ 972
Query: 585 AVDFSKTGVA-----ATIPSGLRVEIY--PDF-----MEKQDKTCYESQRVIGKLYRA 630
AVD+ K G+ I LR +I PD+ + D Y+S RV+G LYR+
Sbjct: 973 AVDYPKKGIPIDLDNPEIKRILRPKITHKPDWDRDGSSDMVDTIYYKSSRVLGHLYRS 1030
>gi|409046080|gb|EKM55560.1| hypothetical protein PHACADRAFT_173707 [Phanerochaete carnosa
HHB-10118-sp]
Length = 876
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 141/475 (29%), Positives = 219/475 (46%), Gaps = 64/475 (13%)
Query: 57 LVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEER 116
+VTPS V GP + NRV+R Y FLR+ F DE + S +
Sbjct: 420 IVTPSTVRLEGPFLEQCNRVIRKYARNTSCFLRVRFADEARLQFR--------SEREVDC 471
Query: 117 HTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPE-------------L 163
I+ R + LR G+VI + F L ++ + +K+++ W S + +
Sbjct: 472 RAFIHNRFGNVLRRGLVIAGRHFHFLGYTQASLKEHTAWFVRSFKQPAVTSDGTSCEETV 531
Query: 164 TAADIRESMGDFRD-------IKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVED 216
TA I +G F I A+Y AR Q F S+ ++ +D DIE++ D+ V+
Sbjct: 532 TADTIIAGLGVFDGILYDPELIMCPARYGARQAQCFSSTSASVTIDLDDIEVVEDI-VDA 590
Query: 217 DGITYCFSDGIGKISAEL-AEIVAKNCGFTIYTPSA-----FQIRYGGYKGVVAVDP-TS 269
DG F+DG+G IS L AEI + C + PS FQIR G KG+V+VD
Sbjct: 591 DG-ERSFTDGVGTISPNLAAEIWTRLCAASGRPPSERGPRRFQIRIQGAKGMVSVDHLLQ 649
Query: 270 STKLSLRKSMLK-YKSESTSLDILANSKYQPC--FLNRQLITLLSTLGI-RDHVFEKKQR 325
KL LR SM+K Y ++S +L+I A++ +P +LNR L+ LL L I + F K +
Sbjct: 650 GRKLCLRPSMIKFYAADSRTLEI-ADAFVKPSKFYLNRPLVMLLEELDILGGYDFLKFLQ 708
Query: 326 EGVAQLDAILTDPLKAHEAL----ELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFR 381
E V + L A L L + + +NV +EL G + F +L R
Sbjct: 709 ESVVEKTEAAVQSLYAAADLFDDFNLGRTYDLSNVFRELHHMGIATLDDTFSQQVLCFGR 768
Query: 382 ASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGEL 441
L +L+ R RI + +G ++G D G LE G++F +E +
Sbjct: 769 HHVLRDLKYRARIPVPSGWNLVGVADIHGCLEEGEIFACVIPYEGQEPI----------- 817
Query: 442 GVVEGKVVVAKNPCLHPGDMRVLRAVDVP------SLHHMVDCVVFPAKGKRPHT 490
+ G +++++P +H GD++V+RA+ P + + + VVF KG T
Sbjct: 818 -YLHGPTLISRSPVIHRGDVQVVRAIGPPPPGSPFEIEPLHNSVVFSTKGSSAFT 871
>gi|405974296|gb|EKC38952.1| Putative RNA-dependent RNA polymerase SHL2 [Crassostrea gigas]
Length = 520
Score = 153 bits (387), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 97/252 (38%), Positives = 140/252 (55%), Gaps = 18/252 (7%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
V + ++TPS++ E NR++R Y D F+RL + DED +K IS
Sbjct: 255 VRRAVLTPSRLILLSKEPVYFNRILRQY--NADYFIRLVYRDEDFEK---------ISGM 303
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESM 172
+ E + NG I D+ +E L SNSQ++++S W F+S +TA IR+S
Sbjct: 304 KYRGPQHLLEDMKQHFINGFTIYDRHYEFLGCSNSQLREHSFWFFSSYDGITAEFIRQSS 363
Query: 173 GDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISA 232
GD + VA Y +R G F SS L ++ + E+ + +V +G YCF+DGIGKIS
Sbjct: 364 GDLAKERCVASYVSRFGLCFSSSWNTLTIEEHE-EVRFEKDVTRNG--YCFTDGIGKISK 420
Query: 233 ELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK---LSLRKSMLKYKSESTSL 289
LA VAK+ I PSAFQIRYGG KGV+A+DP+ + +R+SM K++S S SL
Sbjct: 421 RLAAKVAKSMDLNI-VPSAFQIRYGGCKGVIAIDPSLGENREIIVIRESMKKFESNSKSL 479
Query: 290 DILANSKYQPCF 301
++L S+ CF
Sbjct: 480 EVLQVSRPVFCF 491
>gi|66736429|gb|AAY54273.1| RNA-dependent RNA polymerase [Caenorhabditis remanei]
Length = 200
Score = 152 bits (384), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 118/197 (59%), Gaps = 5/197 (2%)
Query: 399 GRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELG--VVEGKVVVAKNPCL 456
GR+M+G +DETG L+ GQ+FVQ + + + S G VV G V++ KNPC+
Sbjct: 6 GRSMLGIVDETGRLQYGQIFVQYTRNSNEKLPPRSNMQHMKVQGSQVVTGTVLLTKNPCI 65
Query: 457 HPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ 516
GD+R+ AVD+P LHH+ D VVFP G RPH +E +GSDLDGD Y V WD +L+
Sbjct: 66 VTGDVRIFEAVDIPELHHLCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQQLLLDKN 125
Query: 517 FPPMDYT-PAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQC 575
P D+T E R+M + + E++ Y+ DS+G I N H+ ++D +R C
Sbjct: 126 EAPFDFTVEKKEMPYDREMIDQLMHEFYVKYLKLDSVGTISNNHLHNSDQYGLNSRV--C 183
Query: 576 LELAKLSTIAVDFSKTG 592
++LAK + AVDF+K+G
Sbjct: 184 MDLAKKNCQAVDFTKSG 200
>gi|341879478|gb|EGT35413.1| hypothetical protein CAEBREN_30970 [Caenorhabditis brenneri]
Length = 1948
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 142/498 (28%), Positives = 227/498 (45%), Gaps = 85/498 (17%)
Query: 364 GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQN--GRAMMGCLDETGTLESGQVFVQC 421
G+ EPF +++ +++ L + I I + GR+M G DETG L+ GQVFVQ
Sbjct: 1006 GFSLCTEPFFRALIKAAIDFSMMRLLKKVNIPIPSNVGRSMFGVTDETGLLQYGQVFVQY 1065
Query: 422 SASRRRE--------FLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLH 473
+ + + L N S ++ + G ++V K P + GD+R+ AVD+P L
Sbjct: 1066 TENVNNKHPSGVSGKILKGKSNFLSFKIQFISGPLMVTKFPSMCEGDVRMYEAVDIPELR 1125
Query: 474 HMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDY-TPAPEKVLAR 532
H+ + +VFP G R +E +GSDLDGD Y V WD L Y PEK L
Sbjct: 1126 HLENVIVFPQNGPRSMPDEMAGSDLDGDEYAVIWDPFLFFERNETAFAYCNDKPEKKLNI 1185
Query: 533 DMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTG 592
D E + ++A+++ + +G+ H+ +D S C LA+ + + +D+SK+G
Sbjct: 1186 DEMDEGMNVFYAEFMNQEDVGITATNHLHQSDQY--GINSKVCNILAEKNAMLLDYSKSG 1243
Query: 593 VAATIPSGL-----------------RVEIYPDFMEKQ--DKTCYESQRVIGKLYRAVKD 633
VA PS L + E PDF + Y+S R++G L+R ++
Sbjct: 1244 VA---PSPLTFNWDKHPETKKWVPPEKSERKPDFANNRFSMNQTYQSSRLLGTLHRELRS 1300
Query: 634 IAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEA 693
+ AT S K+V + D + G+E Y + A Y+ L ++M+ +G+ TEA
Sbjct: 1301 VNDVVAT--SAEKQVPL-VLDDLLVWTGWEQYKSVAEAQLLRYNGALRSIMETFGVNTEA 1357
Query: 694 EILSGCIMEM-AKSFDKKRD------LEAII-FAVKSLKKEARAWFNK------------ 733
E+ SG E+ + DK++D E +I V +L ++ RA F +
Sbjct: 1358 EVFSGYYREIRNRQSDKEQDDMSQYCTENVIETQVTALYRKFRAEFFEEFAEHTPDSPAY 1417
Query: 734 ------KNESDSSHEDV------------YAKASAWYHVAYHPSYWGRYKEEGMNRTHFL 775
+NE +DV AKA A+Y Y + E+G + L
Sbjct: 1418 MRLTVPENERVWEEKDVLRRVCRKPSNAMMAKAVAYYRTCYQNAV-----EKGDRK---L 1469
Query: 776 SFPWCIHDKLIEIKRGKQ 793
SF W +D ++ I RGK+
Sbjct: 1470 SFAWLAYD-ILNIVRGKK 1486
>gi|406867650|gb|EKD20688.1| RNA-dependent RNA polymerase 1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 901
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 143/569 (25%), Positives = 237/569 (41%), Gaps = 135/569 (23%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
+++ VT + + SGP++ +NR +R Y + D F+R+SF ED + PL+ +
Sbjct: 371 IHRARVTATSITLSGPQLESNNRTLRKYKEFHDYFMRVSFGAEDGE--------PLMYHS 422
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAA----DI 168
+ + R G+ IG + F L F S +++ S W+ A L + DI
Sbjct: 423 KVSNYHVYHGRFQEIPDRGVKIGGRVFSFLGFPQSSLRERSYWLVAPFGSLGSLLLDRDI 482
Query: 169 RESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIG 228
+G+F I++ AK AAR+GQ+F +R + +D + + D++ Y FSDG G
Sbjct: 483 TGGLGNFTLIRSPAKCAARIGQAFSDTRSFMTIDPLIVRNMEDIKRSG----YVFSDGCG 538
Query: 229 KISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP-TSSTKLSLRKSMLKYKSEST 287
I+ L + G KG++++D +L LR SM+K+ ST
Sbjct: 539 TIALSLLCL--------------------GAKGMISLDSRLDGDQLCLRDSMIKFDG-ST 577
Query: 288 SLDI-LANSKYQP--CFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEA 344
S DI + + Y+P ++NR+ I + DH E +E + L I P+ A
Sbjct: 578 SNDIEIYDITYRPLPVYMNRKFIKI-------DH-GEPATKE-ITSLRMITESPINASSF 628
Query: 345 LELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMG 404
L+ G++ L +L+ RI + G + G
Sbjct: 629 LKRQGVGDS---------------------FQFPELILRLLRKLKHEARIPVPRGWHLHG 667
Query: 405 CLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEG--------KVVVAKNPCL 456
+DETG+L+ G++F +GV EG ++V+ + P L
Sbjct: 668 IMDETGSLKEGEIFC---------------------VGVEEGVKNVITSERLVITRAPAL 706
Query: 457 HPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ 516
PGD+R+ +AV P+ ++ E G DLDGD ++V WD + +P +
Sbjct: 707 DPGDVRIAKAVMPPAESPLM---------------ELGGGDLDGDRFYVIWDDDALPENE 751
Query: 517 FPPMDYTPAPEKVLA----------RDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLE 566
F +Y P +LA + I+ +V S +IC
Sbjct: 752 FEAAEYPSLPRWILAALFNAKISLDSALIIKRTSGSVPSQLVTASQQIICRG-------- 803
Query: 567 PDKARSNQCLELAKLSTIAVDFSKTGVAA 595
+ +C A L +AVDF KTG+ A
Sbjct: 804 --GTDAEKCKTFAMLHGVAVDFPKTGIPA 830
>gi|402580635|gb|EJW74584.1| hypothetical protein WUBG_14509 [Wuchereria bancrofti]
Length = 168
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 108/166 (65%), Gaps = 7/166 (4%)
Query: 402 MMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDM 461
M G +DETG L+ GQ+FVQC+ R +L ++S +++GKV++ KNPC+ GD+
Sbjct: 1 MFGVMDETGQLQWGQIFVQCT---RNIWLKTP--SQSAAKIILKGKVMLTKNPCIVAGDV 55
Query: 462 RVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMD 521
RV AVD+P LHH+VD VVFP G RPH +E +GSDLDGD Y V WD +LI PP+D
Sbjct: 56 RVFEAVDIPELHHLVDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQKLIFEHNEPPLD 115
Query: 522 YTPAP--EKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADL 565
+T + K++ ++ ++F +YI DS+G I NA +V+ADL
Sbjct: 116 FTKSTSGNKIIDEAQVDLEMRKFFVNYIKQDSIGSISNAFLVNADL 161
>gi|241083173|ref|XP_002409051.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
gi|215492624|gb|EEC02265.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
Length = 597
Score = 150 bits (379), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 111/339 (32%), Positives = 178/339 (52%), Gaps = 38/339 (11%)
Query: 49 GLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPL 108
G + ++ VTPS+V+F P + NRV+R + E +R++F D++L +L +++
Sbjct: 277 GSYLIRRLFVTPSRVFFLPPLLFRENRVLRRFNPEYA--MRVTFRDDNLQQLSRSLM--- 331
Query: 109 ISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAAD- 167
+ R + V LR G+ +G+++F+ LA S SQ++D+ W++A D
Sbjct: 332 ---FHRRRDEMVDAIVGKFLREGVAVGNRRFKFLATSCSQLRDHGAWLYAEDSLGNTVDL 388
Query: 168 IRESMGDFRDIKNVAKYAARLGQSFGSSREALHV--DSSDIEIIPDVEVEDDGIT---YC 222
IR MGDF I N+AK AR+GQ F S+ E L V +++ PD+ ++ +
Sbjct: 389 IRTWMGDFSGIPNIAKKMARMGQCFSSTMETLKVPLKGDIVQMTPDIVGGRHPVSAKEFS 448
Query: 223 FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLK 281
FSDGIG ISA L E +IRY GYKG++ ++P KL LR SM K
Sbjct: 449 FSDGIGMISASLME----------------KIRYAGYKGMLCLNPCLQGDKLVLRPSMRK 492
Query: 282 YK-SESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQL-DAILTDPL 339
+ S S +L+++ S + LNR LIT+L LG+ VF Q+ V Q DA++ +
Sbjct: 493 FDCSSSDNLELVKVSAPRLVCLNRPLITILEQLGVPSRVFLCLQQSTVLQCTDALVCET- 551
Query: 340 KAHEALELMSSGENTNV-LKELLMCGYKPDVEPFLLMML 377
AL+++S T++ EL+ G+ +PF+ +L
Sbjct: 552 ---TALQVLSGFGGTSLPFAELVRGGFCLTRDPFVRSLL 587
>gi|241083169|ref|XP_002409050.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
gi|215492623|gb|EEC02264.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
Length = 167
Score = 150 bits (378), Expect = 4e-33, Method: Composition-based stats.
Identities = 75/165 (45%), Positives = 105/165 (63%), Gaps = 6/165 (3%)
Query: 399 GRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNN--RSGELGVVEGKVVVAKNPCL 456
GR M+G LDET +LE G+VFVQ + + D SC + + ++ G V+V K PCL
Sbjct: 6 GRNMLGVLDETQSLEYGEVFVQFT---EHQLDDGSCEDDPKVPTTKILVGAVLVTKCPCL 62
Query: 457 HPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ 516
HPGD+R AVD+P LHH+ DC+VFPAKG RPH NE +GSDLDGD Y V W+ +L+ P
Sbjct: 63 HPGDVRKFAAVDIPGLHHVKDCIVFPAKGPRPHPNEMAGSDLDGDEYIVIWEKDLLFPGN 122
Query: 517 FPPMDYTPAPEKVLARDMTIED-VEEYFADYIVNDSLGVICNAHV 560
P V+ D ++ED + ++ +YI ND++G++ NAH+
Sbjct: 123 NQPAMVFCDHSSVVPSDDSLEDGMVKFICNYIKNDNVGILSNAHL 167
>gi|403374620|gb|EJY87268.1| RNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1352
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 153/291 (52%), Gaps = 30/291 (10%)
Query: 370 EPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASR---- 425
EP +L + L+ + RI I+N ++G +DETGTL+ G+++++ +
Sbjct: 802 EPIFDSILSNMVLGLAVNLKKKARIRIKNSCTLIGVIDETGTLDEGEIYLKINRGSYDYD 861
Query: 426 --RREFLD--------NSCNNRSGELG-----VVEGKVVVAKNPCLHPGDMRVLRAV-DV 469
+ + +D + +R E+ ++EG V+V KNPC HPGD+R LRAV +
Sbjct: 862 QIQEKLVDEYDEIENADGKKSRLAEINTWLDQIIEGDVIVTKNPCSHPGDIRKLRAVGEH 921
Query: 470 PSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQF--PPMDYTPAPE 527
+ H+ + +VF +KG RP ++ SG DLDGDVY WD L+ LQ P Y E
Sbjct: 922 STFEHLTNVIVFSSKGCRPEQHKMSGGDLDGDVYLCMWDESLVNALQKIEKPAVYKKFEE 981
Query: 528 KVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHAD-LEPDKARSNQCLELAKLSTIAV 586
+ D + + +Y A+Y D+LG + + H+ +D L + + +C+EL+ +IAV
Sbjct: 982 SI-KTDSQKDTIVDYMAEYFEKDNLGHLAHLHLGLSDQLGVEGPYNKECVELSWYISIAV 1040
Query: 587 DFSKTGVAATIPSGLRVEI----YPDFMEKQD--KTCYESQRVIGKLYRAV 631
DF+K G +E +PD+MEK D + ES ++G+LYRAV
Sbjct: 1041 DFAKHGKHVDKDKYEMIEKKLDRWPDYMEKNDIGRKTVESPLILGQLYRAV 1091
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 135/279 (48%), Gaps = 32/279 (11%)
Query: 47 DDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS 106
+D + ++ TP+ F + +NRV+R + DNF RL V++ L K + +
Sbjct: 445 NDNDLRQRRIYQTPTLTLFFANQREQTNRVIRQFKKYKDNFFRLVLVNDQLQKFHFGSM- 503
Query: 107 PLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASR--PELT 164
+ + + + ++ + IGD + L +SNSQ+K++S+WM S PE+
Sbjct: 504 ---------KQKEMLQHMKDLMKQELYIGDSLAQVLNYSNSQLKNHSVWMVCSTSIPEIQ 554
Query: 165 AADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVD-SSDIEIIPDVEVEDDGITYCF 223
I +G F + K AR GQ F +++ +D S++E+I D+E
Sbjct: 555 PNAIISRLGTFTNEGGNLKMFARRGQCFSTTKYVTKLDPDSNVEVIEDIERP-------- 606
Query: 224 SDGIGKISAELAEIVA-KNCGFTIYTPSAFQIRYGGYKGVVAVDP-TSSTKLSLRKSMLK 281
K +LA+ + G ++T GG KGV+ + P K+ LRKS +K
Sbjct: 607 ----KKNDPDLAQAEPDQREGNYVFTDGC-----GGVKGVLMLKPDLDGRKVQLRKSQIK 657
Query: 282 YKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVF 320
+ E+ L+++ S + +LNRQ+I LLS LG+ D+VF
Sbjct: 658 FACENWGLEVIRCSTFSQGYLNRQVILLLSCLGVDDNVF 696
>gi|403337310|gb|EJY67868.1| RNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1352
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 153/291 (52%), Gaps = 30/291 (10%)
Query: 370 EPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASR---- 425
EP +L + L+ + RI I+N ++G +DETGTL+ G+++++ +
Sbjct: 802 EPIFDSILSNMVLGLAVNLKKKARIRIKNSCTLIGVIDETGTLDEGEIYLKINRGSYDYD 861
Query: 426 --RREFLD--------NSCNNRSGELG-----VVEGKVVVAKNPCLHPGDMRVLRAV-DV 469
+ + +D + +R E+ ++EG V+V KNPC HPGD+R LRAV +
Sbjct: 862 QIQEKLVDEYDEIENADGKKSRLAEINTWLDQIIEGDVIVTKNPCSHPGDIRKLRAVGEH 921
Query: 470 PSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQF--PPMDYTPAPE 527
+ H+ + +VF +KG RP ++ SG DLDGDVY WD L+ LQ P Y E
Sbjct: 922 STFEHLTNVIVFSSKGCRPEQHKMSGGDLDGDVYLCMWDESLVNALQKIEKPAVYKKFEE 981
Query: 528 KVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHAD-LEPDKARSNQCLELAKLSTIAV 586
+ D + + +Y A+Y D+LG + + H+ +D L + + +C+EL+ +IAV
Sbjct: 982 SI-KTDSQKDTIVDYMAEYFEKDNLGHLAHLHLGLSDQLGVEGPYNKECVELSWYISIAV 1040
Query: 587 DFSKTGVAATIPSGLRVEI----YPDFMEKQD--KTCYESQRVIGKLYRAV 631
DF+K G +E +PD+MEK D + ES ++G+LYRAV
Sbjct: 1041 DFAKHGKHVDKDKYEMIEKKLDRWPDYMEKNDIGRKTVESPLILGQLYRAV 1091
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 135/279 (48%), Gaps = 32/279 (11%)
Query: 47 DDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS 106
+D + ++ TP+ F + +NRV+R + DNF RL V++ L K + +
Sbjct: 445 NDNDLRQRRIYQTPTLTLFFANQREQTNRVIRQFKKYKDNFFRLVLVNDQLQKFHFGSM- 503
Query: 107 PLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASR--PELT 164
+ + + + ++ + IGD + L +SNSQ+K++S+WM S PE+
Sbjct: 504 ---------KQKEMLQHMKDLMKQELYIGDSLAQVLNYSNSQLKNHSVWMVCSTSIPEIQ 554
Query: 165 AADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVD-SSDIEIIPDVEVEDDGITYCF 223
I +G F + K AR GQ F +++ +D S++E+I D+E
Sbjct: 555 PNAIISRLGTFTNEGGNLKMFARRGQCFSTTKYVTKLDPDSNVEVIEDIERP-------- 606
Query: 224 SDGIGKISAELAEIVA-KNCGFTIYTPSAFQIRYGGYKGVVAVDP-TSSTKLSLRKSMLK 281
K +LA+ + G ++T GG KGV+ + P K+ LRKS +K
Sbjct: 607 ----KKNDPDLAQAEPDQREGNYVFTDGC-----GGVKGVLMLKPDLDGRKVQLRKSQIK 657
Query: 282 YKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVF 320
+ E+ L+++ S + +LNRQ+I LLS LG+ D+VF
Sbjct: 658 FACENWGLEVIRCSTFSQGYLNRQVILLLSCLGVDDNVF 696
>gi|403358446|gb|EJY78873.1| RNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1379
Score = 149 bits (376), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 153/291 (52%), Gaps = 30/291 (10%)
Query: 370 EPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASR---- 425
EP +L + L+ + RI I+N ++G +DETGTL+ G+++++ +
Sbjct: 829 EPIFDSILSNMVLGLAVNLKKKARIRIKNSCTLIGVIDETGTLDEGEIYLKINRGSYDYD 888
Query: 426 --RREFLD--------NSCNNRSGELG-----VVEGKVVVAKNPCLHPGDMRVLRAV-DV 469
+ + +D + +R E+ ++EG V+V KNPC HPGD+R LRAV +
Sbjct: 889 QIQEKLVDEYDEIENADGKKSRLAEINTWLDQIIEGDVIVTKNPCSHPGDIRKLRAVGEH 948
Query: 470 PSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQF--PPMDYTPAPE 527
+ H+ + +VF +KG RP ++ SG DLDGDVY WD L+ LQ P Y E
Sbjct: 949 STFEHLTNVIVFSSKGCRPEQHKMSGGDLDGDVYLCMWDESLVNALQKIEKPAVYKKFEE 1008
Query: 528 KVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHAD-LEPDKARSNQCLELAKLSTIAV 586
+ D + + +Y A+Y D+LG + + H+ +D L + + +C+EL+ +IAV
Sbjct: 1009 SI-KTDSQKDTIVDYMAEYFEKDNLGHLAHLHLGLSDQLGVEGPYNKECVELSWYISIAV 1067
Query: 587 DFSKTGVAATIPSGLRVEI----YPDFMEKQD--KTCYESQRVIGKLYRAV 631
DF+K G +E +PD+MEK D + ES ++G+LYRAV
Sbjct: 1068 DFAKHGKHVDKDKYEMIEKKLDRWPDYMEKNDIGRKTVESPLILGQLYRAV 1118
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 147/291 (50%), Gaps = 29/291 (9%)
Query: 47 DDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS 106
+D + ++ TP+ F + +NRV+R + DNF RL V++ L K + +
Sbjct: 445 NDNDLRQRRIYQTPTLTLFFANQREQTNRVIRQFKKYKDNFFRLVLVNDQLQKFHFGSM- 503
Query: 107 PLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASR--PELT 164
+ + + + ++ + IGD + L +SNSQ+K++S+WM S PE+
Sbjct: 504 ---------KQKEMLQHMKDLMKQELYIGDSLAQVLNYSNSQLKNHSVWMVCSTSIPEIQ 554
Query: 165 AADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVD-SSDIEIIPDVE---------- 213
I +G F + K AR GQ F +++ +D S++E+I D+E
Sbjct: 555 PNAIISRLGTFTNEGGNLKMFARRGQCFSTTKYVTKLDPDSNVEVIEDIERPKKNDPDLA 614
Query: 214 -VEDDGI--TYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP-TS 269
E D Y F+DG G IS LA +A+ + SAFQ+R GG KGV+ + P
Sbjct: 615 QAEPDQREGNYVFTDGCGNISELLASEIAQ--SHQLMKCSAFQVRIGGVKGVLMLKPDLD 672
Query: 270 STKLSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVF 320
K+ LRKS +K+ E+ L+++ S + +LNRQ+I LLS LG+ D+VF
Sbjct: 673 GRKVQLRKSQIKFACENWGLEVIRCSTFSQGYLNRQVILLLSCLGVDDNVF 723
>gi|313244084|emb|CBY14941.1| unnamed protein product [Oikopleura dioica]
Length = 784
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 144/507 (28%), Positives = 211/507 (41%), Gaps = 76/507 (14%)
Query: 172 MGDFRDIKNVAKYAARLGQSFGSSREALHVDSS------DIEIIPDVEVEDDGITYCFSD 225
G+F IK V+KYAAR+G + + V DI P E Y F+D
Sbjct: 278 FGNFNKIKIVSKYAARIGLLMSPTAATIFVPDKKWAREKDIVGGPPKNPE----KYEFTD 333
Query: 226 GIGKISAELAEIVAKNCGFT-IY-------TPSAFQIRYGGYKGVVAVDPT----SSTKL 273
G G++ +AE+ +Y PS Q R G KG+ DPT +
Sbjct: 334 GCGRMCTRVAEMFRDKLNLKHLYRHQGAYCVPSVIQFRMMGCKGIFVHDPTLDDADKPWV 393
Query: 274 SLRKSMLKYK---------------SESTSLDILANSKYQPCF---LNRQLITLLSTLGI 315
+R S K+ + ++ + +N +P LN Q + LL LG+
Sbjct: 394 MIRDSQWKFDWNMNTVKHLERDKDGNPGRAMGVCSNGFSRPFSFGKLNEQFVVLLDALGL 453
Query: 316 RDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLM 375
D+ F Q++ +L + D + A E++SS + + L P ++
Sbjct: 454 EDNTFLNIQKDHFERLKRCMDDRI---AAFEILSSEKRMDEADLLDRTDEDSPYPPEVIN 510
Query: 376 MLQTFRAS--NLLELRTRTR-----------IFIQNGRAMMGCLDETGTLESGQVFVQCS 422
L+ FR +L + R I I R + G D +G L G+ FVQ +
Sbjct: 511 TLKRFRKPVFDLPSAKPDRREEKNIKNAAFYIPISKSRNVYGVADISGKLRKGECFVQIT 570
Query: 423 ASRRREFLDNSCNNRSGELGVVE----GKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDC 478
+ E +D E ++ KV+V K P HPGD RVL+ VP L H+ D
Sbjct: 571 --QYEEVVDKKRGTSRKERRMLPLGNGAKVLVNKCPTYHPGDFRVLQNTHVPELMHLCDV 628
Query: 479 VVFPAKG-------KRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLA 531
+VFP KRPH +E SDLDGD YFV WD LIP P P P+K +
Sbjct: 629 IVFPVYDKVYNPDLKRPHPHEMHESDLDGDEYFVSWDERLIPEKLEKPF---PCPDKTIG 685
Query: 532 RDMTIE-DVEEYFADYIVNDSL-GVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFS 589
++ E V++ ++ ++ L G I N + A L A SN+C +LAKL +VD +
Sbjct: 686 ANIKDEITVQDLIREFTASEHLVGRINNLFIDWAKLA--GASSNECRQLAKLFNQSVDTA 743
Query: 590 KTGVAATIPSGLRVEIYPDFMEKQDKT 616
K G I L P K D+
Sbjct: 744 KHGGKVEISKHLTRGRRPTAPWKNDRA 770
>gi|290988183|ref|XP_002676801.1| predicted protein [Naegleria gruberi]
gi|284090405|gb|EFC44057.1| predicted protein [Naegleria gruberi]
Length = 1650
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 141/516 (27%), Positives = 234/516 (45%), Gaps = 73/516 (14%)
Query: 123 RVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESM---GDFRDIK 179
+++ + I K++ + S S ++ + ++ F + +++ E M G +
Sbjct: 298 KIIDVVPASIECCGKEYRPVGGSLSMLRSDYVYFFDTTAMPACSEVDELMQIFGTYDSNL 357
Query: 180 NVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVA 239
N K +R +F +++E ++ + + D E+ DG +DGIGKIS +A+ ++
Sbjct: 358 NPFKLVSRHALNFTTTKETCTINK--WKCVKD-ELAIDGSE--MTDGIGKISQSIAQQIS 412
Query: 240 KNCGFTIYTPSAFQIRYGGYKGVVAVDPTS----STKLSLRKSMLKY--KSESTSLDILA 293
G + P+A QIR+ G+KGV++V P + LR+SM K+ K E +++++
Sbjct: 413 NQLGL-VSVPTALQIRFLGFKGVLSVLPDEDLGDGMDVILRESMCKFNGKEELNKIELVS 471
Query: 294 -NSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGE 352
+ +P +LN+Q+I LL+TLGI F + L +T P + L+ E
Sbjct: 472 CTTARKPAYLNKQIILLLTTLGITKETFLSIFLDYFKDLSEKITSPKYFLKVLK-----E 526
Query: 353 N-TNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGT 411
N + L + PD E FL + + + +++T+ I I+ M +DE
Sbjct: 527 NCMDTLPAIQSLNEMPDDE-FLQYLARYLIYDEIKKVQTKAMIPIEKAVIAMSIVDEYKQ 585
Query: 412 LESGQVFVQCSASRRREFLDNSCNNRSGELGVVE--GKVVVAKNPCLHPGDMRVLRAVDV 469
L+ +V VQ G+ +E +V + +NPCLHP D++ D
Sbjct: 586 LKENEVMVQL-----------------GDGNYIEDGTQVFICRNPCLHPSDIQTFTCRDN 628
Query: 470 PSLHHMVD----CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP-------PLQF- 517
L ++FP +G D DGD FVCWD LIP PL
Sbjct: 629 SLLRSKYRPSNAAIIFPTQG----YTSIKICDFDGDRVFVCWDSRLIPDQVSNLSPLTHD 684
Query: 518 -PPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCL 576
PM+ T +VL++ +E+ LG I +A V D E A S++ L
Sbjct: 685 NEPMESTTEHSEVLSK--ILEN----------GKLLGKISDAWVAIVDSE--GADSDRAL 730
Query: 577 ELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEK 612
ELA L AVDF K G ++P+ + IYPDFME+
Sbjct: 731 ELADLFVKAVDFPKNGKQISLPNWFKDIIYPDFMER 766
>gi|290993091|ref|XP_002679167.1| RNA dependent RNA polymerase [Naegleria gruberi]
gi|284092782|gb|EFC46423.1| RNA dependent RNA polymerase [Naegleria gruberi]
Length = 1235
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 147/544 (27%), Positives = 248/544 (45%), Gaps = 106/544 (19%)
Query: 208 IIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNC------------------------G 243
+IPD+E DG + F+DG G IS ++A+ V K+ G
Sbjct: 340 VIPDIE--RDG--FNFTDGCGFISPDMAKKVYKHILNAENRVLIKTDQEEDEIGYDEQRG 395
Query: 244 FTI-----YTPSAFQIRYGGYKGVVAVDPTSSTK----LSLRKSMLKYKSES------TS 288
F + Y PSAFQIR+ G KG++ V+ + K + LR+SM+K K+ ++
Sbjct: 396 FDLFSDSSYIPSAFQIRFRGAKGMLVVNTETFEKYRVHIVLRESMVKCKTNEKVDQSFST 455
Query: 289 LDILANSKYQPCFLNRQLITLLSTLG-------IRDHVFEKKQREGVAQLDAILTDPLKA 341
L I+ +S PC L R T++ L +R V E LD +
Sbjct: 456 LQIVGHS--SPCELTRVNSTIMHLLSGCDSNGEVRKRVLEMASAHVQNSLDKYV------ 507
Query: 342 HEALELMSSG--ENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNG 399
HE E+++ ++ N++ ++ K FL A L T +I N
Sbjct: 508 HEDTEVIARQYMKDNNLISLNVLSTTKNKGFAFL--------AGPYKSLITSLKIPFSNS 559
Query: 400 RAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPG 459
R + G +D L G+VFVQ S+ + N + + V++ ++V+ K PCLH G
Sbjct: 560 RRLYGVVDPYEVLNEGEVFVQISSFK------NPSHKQ-----VLQKEIVLTKEPCLHRG 608
Query: 460 DMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPP 519
D+R ++AV P L H+ D +VF +KGKRP N SGSDLDGD +FVCWD ++ ++
Sbjct: 609 DLRKIKAVYYPKLSHLCDVIVFSSKGKRPVPNMISGSDLDGDQFFVCWDDLIVDNVKI-- 666
Query: 520 MDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVH--ADLEPDKARSNQCLE 577
+ P + ++ ED+ + D + D +GV +A+V H ++ D+ + +
Sbjct: 667 --FEPG---LFDEEIKQEDIRPFEPD-VFKDWVGV-RHAYVDHHGSNWTNDENWNKEMRR 719
Query: 578 LAKLSTIAVDFSKTGV--AATIPSGLR----VEIYPDFMEKQDKTCYESQRVIGKLYRAV 631
L ++ AV K GV AT LR YP + + + +S + ++Y+ +
Sbjct: 720 LCEIVNHAVGSPKNGVISVATREEDLRFIDNFPGYPHYHQSKRGALKKSSSLASEVYQQM 779
Query: 632 KDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKT 691
D TK + ++ ++ + V +D+I ++ + + +D L N + +G K
Sbjct: 780 VD---------CITKTLELKEHNIRISVQNDKDHILESIRLEI-FDLLLANTSNNFGEKI 829
Query: 692 EAEI 695
+I
Sbjct: 830 MKKI 833
>gi|406693965|gb|EKC97304.1| hypothetical protein A1Q2_08384 [Trichosporon asahii var. asahii
CBS 8904]
Length = 945
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 142/535 (26%), Positives = 230/535 (42%), Gaps = 85/535 (15%)
Query: 46 LDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVD-EDLDKLYSTV 104
LD+ + V LVTP+++ P + S +R++ D FLR+ F+D ED ++ TV
Sbjct: 278 LDENSVVVYHCLVTPTRLVLLPPGVETSTDAIRNHLSFSDRFLRVEFIDEEDGFQVNPTV 337
Query: 105 LSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRP--E 162
L + E T+ RV + NG+ I + + LA+ + + S W A P
Sbjct: 338 LE---ADQMEPAEGTV-ARVRRAMMNGLNIAGRHYVFLAYGATSARQQSCWFLAEDPAKN 393
Query: 163 LTAADIRESMG-DFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDV-EVEDDGIT 220
LT ++ ++G D VA++ +++ I+PD+ +
Sbjct: 394 LTVESVKRNLGLDLLRDTTVARFVSKMAI-----------------ILPDILHADQQEKG 436
Query: 221 YCFSD-GIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSM 279
YC SD G +ISA + +N +Y R+S
Sbjct: 437 YCESDAGRTEISAVEDKESMENISEEVY---------------------------FRQSQ 469
Query: 280 LKYKSESTSLDILAN-SKYQPCFLNRQLITLLSTLGIRDHVFEK----KQREGVAQLDAI 334
+KY++ S ++ N +++ L+RQ + +++ LG+ D VFE RE L
Sbjct: 470 VKYRTGSKTMAYGLNIVEFKRAHLSRQAVVIMNHLGVPDAVFESLFILAMREARGLLKRS 529
Query: 335 LTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRI 394
T L E L L+S + V EL G+K D P LL + + L + R R+
Sbjct: 530 ATAGL-LKEDLSLVSQHTHFPV-SELYSFGFKTD--PMLLDICRATAVRLLSDYRHNARL 585
Query: 395 FIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNP 454
+ +MG DE L +VF Q + S VV G + ++P
Sbjct: 586 QVDQSVKLMGIADELNVLSEHEVFCQYDDP-----------DSSDGPNVVLGACAIMRDP 634
Query: 455 CLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP 514
LHPGD++++ AVD P LHH+ + +VF +G+ S +L GD Y + WD LIPP
Sbjct: 635 VLHPGDIQLVHAVDRPELHHLRNVIVFSVQGQ-----PLSRGNLAGDQYSLIWDPVLIPP 689
Query: 515 LQFPPMDYTPAPEKVLAR--DMTIEDVEEYFADYIVNDSLGVI---CNAHVVHAD 564
Q P YTP + + D + DV A+ + + ++ C+AH+ AD
Sbjct: 690 EQVEPSSYTPPEPATVPKVADKHLRDVGSERAE-LTQKLMAIVEQLCDAHLAIAD 743
>gi|405974297|gb|EKC38953.1| Translocon-associated protein subunit beta [Crassostrea gigas]
Length = 1284
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 140/251 (55%), Gaps = 17/251 (6%)
Query: 49 GLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPL 108
G + ++++TP+K F E + NR++R Y +E F+R+ F DED +K+ + + L
Sbjct: 457 GYSNIRRIVLTPTKHVFYPKEPIVQNRIIRQYAEEY--FIRIVFRDEDYEKVSAIAPNSL 514
Query: 109 ISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADI 168
S + + + L G I +++E L SNSQ++++ W F + A I
Sbjct: 515 DS---------VIDAMKQFLCAGFRILTRRYEFLGCSNSQLREHGFWFFCPNDDTNAQMI 565
Query: 169 RESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIG 228
R++ GD + VA Y +R G F +SR+ + V D E++ ++E + YCFSDGIG
Sbjct: 566 RDNCGDIYLERCVASYVSRFGLCFSASRDTVDVGMQDGELVHQKDIEWN--NYCFSDGIG 623
Query: 229 KISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK---LSLRKSMLKYKSE 285
KIS LA V K G+ + PSAFQIRYGG KGVV+ DP + L +R+SM K+ SE
Sbjct: 624 KISPCLANKVTKALGYKV-KPSAFQIRYGGCKGVVSQDPDLGEEKDVLVIRESMNKFNSE 682
Query: 286 STSLDILANSK 296
S L+IL +K
Sbjct: 683 SKKLEILQVTK 693
>gi|290976086|ref|XP_002670772.1| predicted protein [Naegleria gruberi]
gi|284084334|gb|EFC38028.1| predicted protein [Naegleria gruberi]
Length = 1384
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 138/520 (26%), Positives = 225/520 (43%), Gaps = 109/520 (20%)
Query: 196 REALHVDSSDIEIIPDVEV------EDDGITYCFSDGIGKISAELA----EIVAK----- 240
+++L + + +IP + V D+G+ F+DG G IS ELA EIV K
Sbjct: 349 KQSLRLALFNTPVIPTIGVSEYTVINDEGL---FTDGCGFISLELAMKVYEIVRKSKNLL 405
Query: 241 ----------------NCGFTI----YTPSAFQIRYGGYKGVVAVDPTSST----KLSLR 276
N G Y P A+QIR+ G KG+V + P + L LR
Sbjct: 406 KYQSKQSMDEDGIYEENDGVEFLVNEYLPCAYQIRFRGAKGMVYIHPNAEKVYGHHLVLR 465
Query: 277 KSMLKYKSESTSLDILAN----SKYQPCFLNRQLITLLSTL-GIRDH-----VFEKKQRE 326
KSM+K + +T DI+ N PC R T++ L G D +FE ++
Sbjct: 466 KSMMKIEHPNTDDDIINNLCIVGYSSPCDFARINSTIMHILEGCEDETKQGKIFEILNQK 525
Query: 327 GVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLL 386
++ ++ + +S + V + + G + +L +L++ + + L
Sbjct: 526 ACKHIENLMKN---------YISESDIDKVFDQYVKQGDYASLN--VLSILKSKKLAFLT 574
Query: 387 -ELRTRT---RIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELG 442
R + RI + R + G D G L+ GQ+F+Q S+ N +
Sbjct: 575 GPYRNQILSLRIPCYSSRRLYGIADPFGVLKEGQIFIQVSSL-----------NDPKKKN 623
Query: 443 VVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDV 502
V+E V+V K PCLH GD+R L AV++P L+ + D +VFP KG RP TN +GSDLDGD
Sbjct: 624 VIENTVIVTKEPCLHRGDLRKLEAVNIPELNFLYDVIVFPTKGSRPITNMIAGSDLDGDQ 683
Query: 503 YFVCWDHELIPPL-QFPPMDY------TPAPEKVLARDMTIEDVEEYFADYIVNDSLGVI 555
YF CWD+EL+ L +F P + T + + + +D+ + FAD+ N
Sbjct: 684 YFACWDNELVESLVEFDPGSFDDDYNETRSFDPDIFKDLI--GIRHLFADFYGN------ 735
Query: 556 CNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEI------YPDF 609
+ + N L L A+D K G + + +E+ +P +
Sbjct: 736 ----------QWSRKYWNNMERLCTLINRAIDAPKKGNYSVAVNAQDLELLEKFPGFPHY 785
Query: 610 MEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVA 649
+ + S ++GKLY +++ + K ++A
Sbjct: 786 HKNKHGPLRRSVSLVGKLYDSMQLLVSQKLEFKDPNSQIA 825
>gi|4138610|emb|CAA09895.1| RNA-directed RNA polymerase [Triticum aestivum]
Length = 107
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/106 (65%), Positives = 81/106 (76%)
Query: 488 PHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYI 547
PH NECSGSDLDGD+YFV WD +LIP PMDYTPAP + L D+ IE+V EYF +YI
Sbjct: 1 PHPNECSGSDLDGDIYFVSWDPDLIPTRMVAPMDYTPAPTETLDHDVMIEEVHEYFTNYI 60
Query: 548 VNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGV 593
VN+SLG+I NAHVV AD E KA S C++LA+L +IAVDF KTGV
Sbjct: 61 VNESLGIIANAHVVFADREILKAESTPCIKLAELFSIAVDFPKTGV 106
>gi|440298585|gb|ELP91216.1| RNA-dependent RNA polymerase, putative [Entamoeba invadens IP1]
Length = 1008
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 144/502 (28%), Positives = 220/502 (43%), Gaps = 68/502 (13%)
Query: 136 DKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMG-DFRD--IKNVAKYAARLGQSF 192
++++E + SQ + + W + ++T S+G D + IKN R G
Sbjct: 300 NRRYEFFLSNPSQSRSGACWFIDNTDDITRVAAYNSLGIDLKSAKIKNSGILLMRAGLFG 359
Query: 193 GSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIV---AKNCG---FTI 246
S + I+ I DV E Y FSDG+G+IS LA V + CG +
Sbjct: 360 SDSVATAGIYPQQIKRIEDVTNEGG---YTFSDGVGRISLSLASKVFAEYRRCGENVIRV 416
Query: 247 YTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLK---YKSESTSLDILANSKYQPCFL 302
P+AFQIR+ G KGVV+VD S + R S +K + L ++ +Y+ +
Sbjct: 417 EEPAAFQIRFAGVKGVVSVDCLDKSENIYFRPSQIKIEAFPERVQKLRVVQIPQYRSGRM 476
Query: 303 NRQLITLLSTLGIRDHVFEKKQREGVAQ-LDAILTDPLKAHEALELMS-SGENTNV---L 357
N QL L L I F + +E + + +I D E + L + +N V L
Sbjct: 477 NEQLALGLEYLEIPIPNFIQCAKEYLRKYFTSIPND-----EVVRLFQKNAKNPTVAIAL 531
Query: 358 KELLMCGYKPDV--EPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESG 415
K ++ G + EPF+ R + L E + I N +MG +DETG LE G
Sbjct: 532 KMVMAAGRDSKIFEEPFVKANSLVLRMAMLSEKSDFIKFDIDNSAFLMGVMDETGILEEG 591
Query: 416 QVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAV-------- 467
QVF+Q S S + V +++ K P HPGD +LR V
Sbjct: 592 QVFIQLS---------------SNSVFVPSSRLLAVKFPATHPGDFLLLRNVCENVLFER 636
Query: 468 --DVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPL---QFPPMDY 522
L ++ D +VF +KG RP N+ +G DLDGD Y V W+ +P L PP +Y
Sbjct: 637 KRGYERLAYLKDVIVFSSKGYRPDPNKMAGGDLDGDEYLVIWNPLFLPKLGKKSHPPANY 696
Query: 523 TPAPEKVLARDMTIEDVEEYFADYIVND-SLGVICNAH---VVHADLEPDKARSNQCLEL 578
E L R + D++ F + + L I H + ++ + +++ L
Sbjct: 697 D-FEETHLERFLEYNDMKHAFVSQLYSKYVLAQISTCHKKACMSLGMQDEISKA-----L 750
Query: 579 AKLSTIAVDFSKTGVAATIPSG 600
++L ++AVD KTG A I SG
Sbjct: 751 SQLISVAVDAPKTG--AEIDSG 770
>gi|402594185|gb|EJW88111.1| hypothetical protein WUBG_00980 [Wuchereria bancrofti]
Length = 902
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 127/413 (30%), Positives = 194/413 (46%), Gaps = 53/413 (12%)
Query: 47 DDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS 106
D+G V K ++TP+++ PE+ + NRV+R + + D+ LR+ F D+D L +
Sbjct: 466 DEGFQRVRKAVITPTRMLLVVPELLMGNRVLREFDESGDSALRIQFRDDDGAHLRRSRAG 525
Query: 107 PLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAA 166
I T TI+ + L G+ I D+ F LA SNSQ++DN + F +
Sbjct: 526 LYIIET------TIH----NCLLRGVHISDRHFVYLASSNSQMRDNGCYFFNDGVDGKVK 575
Query: 167 DIRESMGDFRDIKNVAKYAARLGQSFGSSREA-LHVDSSDIEIIPDVEVEDD--GITYCF 223
IR+ +G F D N+ K +R+GQ F S+E+ + + DV D G + F
Sbjct: 576 KIRDKLGKF-DHTNIPKLMSRMGQCFTQSKESDVTLRRRKYNKTYDVIGGKDSCGEPFIF 634
Query: 224 SDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-SSTKLSLRKSMLKY 282
SDG+GK+S + AE +A + G PS FQ RY G KGV++VDP +L ++ L+
Sbjct: 635 SDGVGKLSEDFAEQIANDLGLGKCVPSCFQFRYRGLKGVLSVDPALRQRRLWAERNGLED 694
Query: 283 KSESTS----LDIL---ANSKYQ--------------PCF--LNRQLITLLSTLG----- 314
K T LDIL + K+ P F LNR LI +L +
Sbjct: 695 KHAKTEKVNDLDILFRPSQDKFHAPRKEIIEIVKYSCPTFVYLNRPLINILDQVSDMQGF 754
Query: 315 -----IRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDV 369
I + + R+ + DA++++ + E L N L L G+
Sbjct: 755 DVHSRIVNRIHGLLDRQLLKLSDALMSED-RCRERLAEFPRRINVQYLS--LARGFTLTQ 811
Query: 370 EPFLL-MMLQTFRASNLLEL-RTRTRIFIQNGRAMMGCLDETGTLESGQVFVQ 420
EPF +++ + R + +L + +I GR M G LDETG L+ GQVFVQ
Sbjct: 812 EPFFHGLLIASVRFALQKQLSKEHIQIPTNLGRTMFGILDETGLLQYGQVFVQ 864
>gi|302678369|ref|XP_003028867.1| hypothetical protein SCHCODRAFT_236896 [Schizophyllum commune H4-8]
gi|300102556|gb|EFI93964.1| hypothetical protein SCHCODRAFT_236896 [Schizophyllum commune H4-8]
Length = 711
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 178/711 (25%), Positives = 293/711 (41%), Gaps = 156/711 (21%)
Query: 138 KFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSRE 197
K+ L F+ SQ+KD + + T +++G+ + I +
Sbjct: 85 KYSWLGFTESQLKDGTFLLLREDEHWTVDRFLDALGNVKSIPDEL--------------- 129
Query: 198 ALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYG 257
+ IPD + D + F+DG G I A V T + FQIR G
Sbjct: 130 --------VATIPDFQATDGTL---FTDGCGLIRDSCAAEVCSALEIPEDT-TVFQIRRG 177
Query: 258 GYKGVVAVDP-------------TSSTKLSLRKSMLKYKSESTSLDILANSKY-QPCFLN 303
G KG++ P K++LR SM KY T L+I + ++ + LN
Sbjct: 178 GVKGLLVRYPDVVFDRICRDAGRRGPMKIALRPSMRKYPGGPTVLEIHSVARRPRSARLN 237
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNV---LKEL 360
R I LL TLG+R FE R + +D I+T +A +ALE + L +L
Sbjct: 238 RHFIILLLTLGVRLEAFESLLRANLEFIDLIMTSRQRALDALEAELDADGAGFDQELHDL 297
Query: 361 LMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQ 420
L+ G++ EP + +L+ + +L LR + I ++N + G DE G L G+V++
Sbjct: 298 LLAGFQLS-EPHVRCLLERLQKRSLDVLRKKLNIRVKNSFYLFGVCDELGVLREGEVYI- 355
Query: 421 CSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVV 480
N +G++ + G V+V +NP +RVL+AV+ P L H+ +C+V
Sbjct: 356 ---------------NVAGDVKL--GTVLVGRNPAYSTSVLRVLQAVNRPGLSHLRNCIV 398
Query: 481 FPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP-LQFP-----PMDYTPAP-------- 526
F + G R T++ G D+DGD ++V + LIPP + P P+ PAP
Sbjct: 399 FASGGARSETSKMQG-DVDGDNFWVTTEPSLIPPRMAEPPPFAQPVSTAPAPMSPEANTV 457
Query: 527 --------EKVLARDM-TIEDV---EEYFADYI-VNDS--LGVICNAHVVHADLEPDKAR 571
+ DM T+ ++ E+ Y+ + S LG A + + L + A
Sbjct: 458 HTVSEIDMHTISGVDMHTVSEIDMHEDALKTYMRLRHSFVLGQASKAWMENVVLTSELAD 517
Query: 572 SNQCLELAKLSTIAVDFSKTGVAAT-IPSGLRVEIYPDFMEK----QDKTCYESQRVIGK 626
+ ELA + AVD K+G +A+ + S L+ + +++ QD +
Sbjct: 518 APVARELAGIVERAVDLVKSGGSASRLESNLKTTLGTMSIQRTPGWQDPLAF-------- 569
Query: 627 LYRAVKDIAP--PTATIKSFTKEVAMQSYDTDMEVDG------FEDYITDAFKYKTEYDN 678
+ I P P FT D D+++ G +E+ + +A + ++N
Sbjct: 570 ----LVSIIPSSPRGQQTDFT-------IDPDLDLSGSVDREEWENLVEEARRIMPLFNN 618
Query: 679 RLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESD 738
L + I+TE E A+ D +R+ VK ++ ++ F + N
Sbjct: 619 ALAS-----AIRTE--------QETAEDGDDEREAMKETDVVK--ERFLKSHFPRVNIMT 663
Query: 739 SSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIK 789
+ +AKASAWY Y R H +F W L IK
Sbjct: 664 LPKQ--WAKASAWYVTGY--------------RAHKEAFSWLPARYLAHIK 698
>gi|119370384|gb|ABL68089.1| putative RNA-directed RNA polymerase 2 [Nicotiana attenuata]
Length = 108
Score = 135 bits (341), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/107 (60%), Positives = 82/107 (76%), Gaps = 1/107 (0%)
Query: 185 AARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGF 244
AAR+GQ F +S + + V S +EI+PD+EV DG++YCFSDGIGKIS A VA+ CG
Sbjct: 1 AARMGQLFSTSFQTMEVQSPHVEILPDIEVTSDGVSYCFSDGIGKISQAFASQVAQKCGL 60
Query: 245 TIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDI 291
+ YTPSAFQIRYGGYKGV+AVD S KLSLR SMLK++S++ L+I
Sbjct: 61 S-YTPSAFQIRYGGYKGVIAVDRNSFRKLSLRGSMLKFESKNRMLNI 106
>gi|401885543|gb|EJT49653.1| hypothetical protein A1Q1_01210 [Trichosporon asahii var. asahii
CBS 2479]
Length = 957
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 136/516 (26%), Positives = 219/516 (42%), Gaps = 93/516 (18%)
Query: 69 EISLSNRVVRSYPDEIDNFLRLSFVD-EDLDKLYSTVLSPLISSTNEERHTTIYERVLST 127
E+ S +R++ D FLR+ F+D ED ++ TVL + E T+ RV
Sbjct: 313 EVETSTDAIRNHLSFSDRFLRVEFIDEEDGFQVNPTVLE---ADQMEPAEGTV-ARVRRA 368
Query: 128 LRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRP--ELTAADIRESMG-DFRDIKNVAKY 184
+ NG+ I + + LA+ + + S W A P LT ++ ++G D VA++
Sbjct: 369 MMNGLNIAGRHYVFLAYGATSARQQSCWFLAEDPAKNLTVESVKRNLGLDLLRDTTVARF 428
Query: 185 AARLGQSFGSSREALHVDSSDIEIIPDV-EVEDDGITYCFSD-GIGKISAELAEIVAKNC 242
+++ I+PD+ + YC SD G +ISA + +N
Sbjct: 429 VSKMAI-----------------ILPDILHADQQEKGYCESDAGRTEISAVEDKESMENV 471
Query: 243 GFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILAN-SKYQPCF 301
+Y R+S +KY++ S ++ N +++
Sbjct: 472 SEEVY---------------------------FRQSQVKYRTGSKTMAYGLNIVEFKRAH 504
Query: 302 LNRQLITLLSTLGIRDHVFEK----KQREGVAQLDAILTDPLKAHEALELMSSGENTNVL 357
L+RQ + +++ LG+ D VFE RE L T L E L L+S + V
Sbjct: 505 LSRQAVVIMNHLGVPDAVFESLFILAMREARGLLKRSATAGL-LKEGLSLVSQHTHFPV- 562
Query: 358 KELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQV 417
EL G+K D P LL + + L + R R+ + +MG DE L +V
Sbjct: 563 SELYSFGFKTD--PMLLDICRATAVRLLSDYRHNARLQVDQSVKLMGIADELNVLSEHEV 620
Query: 418 FVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVD 477
F Q + S VV G + ++P LHPGD++++ AVD P LHH+ +
Sbjct: 621 FCQYDDP-----------DSSDGPNVVLGACAIMRDPVLHPGDIQLVHAVDRPELHHLRN 669
Query: 478 CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIE 537
+VF +G+ S +L GD Y + WD LIPP Q P YTP PE +T
Sbjct: 670 VIVFSVQGQ-----PLSRGNLAGDQYSLIWDPVLIPPEQVEPSSYTP-PEPATVSKVT-- 721
Query: 538 DVEEYFADY------IVNDSLGVI---CNAHVVHAD 564
+++F D + + ++ C+AH+ AD
Sbjct: 722 --DKHFPDVGSERAELTQKLMAIVEQLCDAHLAIAD 755
>gi|336378304|gb|EGO19462.1| hypothetical protein SERLADRAFT_478899 [Serpula lacrymans var.
lacrymans S7.9]
Length = 496
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 109/391 (27%), Positives = 182/391 (46%), Gaps = 52/391 (13%)
Query: 385 LLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVV 444
L EL+ R I + ++G DE G L G+++ + R+G +
Sbjct: 55 LRELKYRAHIAVPGSYTLLGVSDEWGCLREGEIYATVQ------------DERTGLYKPI 102
Query: 445 EGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYF 504
EG VV+ ++P +HPGD++ + AV P L H+ + VVF +G R + +G DLDGD +
Sbjct: 103 EGPVVITRSPQVHPGDLQFVTAVRRPELSHLTNVVVFSCEGDRSLASCLAGGDLDGDDFN 162
Query: 505 VCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHAD 564
+ D L P P Y P K I DV ++ +YI +D +G I H+ AD
Sbjct: 163 LILDEALFPEKVAMPGAYDSLPIKQTTSPCGISDVVDFVMNYIESDLIGYISILHLRFAD 222
Query: 565 LEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPS--GLRVEIYPDFMEK-----QDKTC 617
++ N+CL+LA+ ++ AVD+ KTG + L + PDF+ + Q +
Sbjct: 223 IK--DPGCNECLKLAQFASHAVDYPKTGSPVKMQDLPQLPGKERPDFLAREGANLQGEDF 280
Query: 618 YESQRVIGKLYRAV-----------KDIAPPTA-----TIKSFT-KEVAMQSYDTDMEVD 660
Y+SQ+++GKLYR V +D +P T+ F +++ + S DT
Sbjct: 281 YQSQKLLGKLYRRVPVSEWIPVPWNRDYSPSDGGVIRDTLMRFNFRQLDLPSLDTPS--- 337
Query: 661 GFEDYITDAFKYKTEYDNRLGNLMDYYGIK-------TEAEILSGCIMEMAKSFDKKRD- 712
+D I + +Y +L + + I +EAE++SG IM K+R+
Sbjct: 338 --DDLIEEMGYLLEDYSEQLLVIAKTHTISRHKDIYVSEAELVSGTIMANWSDHRKRREA 395
Query: 713 LEAIIFAVKSLKKEARAWFNKKNESDSSHED 743
+ A+ + L K R + ++ DS ++D
Sbjct: 396 IGAMNLQTQVLAKNIRQAL-QWSDPDSYYDD 425
>gi|183233879|ref|XP_651309.2| RNA-directed RNA polymerase [Entamoeba histolytica HM-1:IMSS]
gi|169801365|gb|EAL45936.2| RNA-directed RNA polymerase, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449710750|gb|EMD49768.1| RNA-dependent RNA polymerase, putative [Entamoeba histolytica KU27]
Length = 1026
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 141/533 (26%), Positives = 224/533 (42%), Gaps = 91/533 (17%)
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKK-------FETLAFSNSQVKDNSMWMFASRPELTA 165
N E+ + ER+ + L +I K F+ L + SQ + + W ++ T
Sbjct: 307 NNEKRMQVMERLETDLMCFYMIKGYKSFFQKRYFQFLLSNPSQSRSGACWFIDNQDGKTT 366
Query: 166 ADIRESMG-DFRD--IKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYC 222
+S+G D + IKN R G S + + I++I D+ E+ Y
Sbjct: 367 MAAYQSLGIDLKSPKIKNAGILLMRTGLFGSDSIATVGIYPQQIKVIDDITNENG---YT 423
Query: 223 FSDGIGKISAELAEIV----AKNCGFTIYT--PSAFQIRYGGYKGVVAVDPTSSTK-LSL 275
FSDG+G+I LA+ V +N I + P AFQIR+ G KGV+ VD T+ +
Sbjct: 424 FSDGVGRIGYPLAKKVLNEYKRNSNLFIKSDEPYAFQIRFAGVKGVLTVDRLDMTENIYF 483
Query: 276 RKSMLKYKSESTS---LDILANSKYQPCFLNRQLITLLSTLGI--RDHVFEKKQ------ 324
R S +K ++ + L ++ +++ +N QL L L I + + KQ
Sbjct: 484 RPSQIKIEALPKTIQKLRVIQIPQFRSGRMNEQLALGLEYLQIPPSNFISSAKQYLKKYF 543
Query: 325 -----REGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQT 379
RE ++ +P+ +M+S N + +E PF+
Sbjct: 544 SVTPNREIISLFQRFTNNPVIEVALKIIMASNGNQKIYEE-----------PFIRATSLV 592
Query: 380 FRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSG 439
R S L E + I N +MG +DE+G LE G+VF+Q + S
Sbjct: 593 LRMSLLSEKTDFIKFDIDNSAFLMGVMDESGLLEEGEVFIQVTTS--------------- 637
Query: 440 ELGVVEGKVVVAKNPCLHPGDMRVLRAV----------DVPSLHHMVDCVVFPAKGKRPH 489
+ + +++V K P HPGD +L V L ++ D +VF +KG RP
Sbjct: 638 TVTIPSSRLLVVKFPATHPGDFVLLNNVVDKINLEKKKGFERLTYLRDVIVFSSKGNRPD 697
Query: 490 TNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAP-----EKV-LARDMTIEDVEEYF 543
N+ SG DLDGD Y + W+ +P P ++ AP EKV L + + D++ F
Sbjct: 698 PNKLSGGDLDGDEYLIIWNPLFLP----KPEIHSHAPATYDSEKVHLEKFLEFTDMKRAF 753
Query: 544 ADYIVNDSLGVICNAHVVHADLEPDKARSNQCLE----LAKLSTIAVDFSKTG 592
+ S V+ V H + C E L++L +I VD KTG
Sbjct: 754 LSQLY--SKFVLSRISVAHKE---SCMNIGMCAEVTKSLSQLISITVDAPKTG 801
>gi|167375406|ref|XP_001733628.1| RNA-dependent RNA polymerase [Entamoeba dispar SAW760]
gi|165905172|gb|EDR30241.1| RNA-dependent RNA polymerase, putative [Entamoeba dispar SAW760]
Length = 1026
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 141/531 (26%), Positives = 222/531 (41%), Gaps = 87/531 (16%)
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKK-------FETLAFSNSQVKDNSMWMFASRPELTA 165
N E+ + ER+ + L +I K F+ L + SQ + + W ++ T
Sbjct: 307 NNEKRMQVMERLETDLMCFYMIKGYKSFFQKRYFQFLLSNPSQSRSGACWFIDNQDGKTT 366
Query: 166 ADIRESMG-DFRD--IKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYC 222
+S+G D + IKN R G S + + I++I D+ E Y
Sbjct: 367 MAAYQSLGIDLKSPKIKNAGILLMRTGLFGSDSIATVGIYPQQIKVIDDITNESG---YT 423
Query: 223 FSDGIGKISAELAEIV----AKNCGFTIYT--PSAFQIRYGGYKGVVAVDPTSSTK-LSL 275
FSDG+G+I LA+ V +N I + P AFQIR+ G KGV+ VD T+ +
Sbjct: 424 FSDGVGRIGYPLAKKVLNEYKRNSNLFIKSDEPYAFQIRFAGVKGVLTVDRLDMTETIYF 483
Query: 276 RKSMLKYKSESTS---LDILANSKYQPCFLNRQLITLLSTLGI--RDHVFEKKQ------ 324
R S +K ++ + L ++ +++ +N QL L L I + + KQ
Sbjct: 484 RPSQIKIEALPKTIQKLRVIQIPQFRSGRMNEQLALGLEYLQIPPSNFISSAKQYLKKYF 543
Query: 325 -----REGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQT 379
RE ++ +P+ +M+S N + +E PF+
Sbjct: 544 SVTPNREIISLFQRFTNNPVIEVALKMIMASNGNQKIYEE-----------PFIRATSLV 592
Query: 380 FRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSG 439
R S L E + I N +MG +DE+G LE G+VF+Q + S
Sbjct: 593 LRMSLLSEKTDFIKFDIDNSAFLMGVMDESGLLEEGEVFIQVT---------------SP 637
Query: 440 ELGVVEGKVVVAKNPCLHPGDMRVLRAV----------DVPSLHHMVDCVVFPAKGKRPH 489
+ + +++V K P HPGD +L V L ++ D +VF +KG RP
Sbjct: 638 TITIPSSRLLVVKFPATHPGDFVLLNNVVDKINLEKKKGYERLTYLRDVIVFSSKGNRPD 697
Query: 490 TNECSGSDLDGDVYFVCWDHELIPPLQF---PPMDYTPAPEKV-LARDMTIEDVEEYFAD 545
N+ SG DLDGD Y + W+ +P + PP Y EKV L + + D++ F
Sbjct: 698 PNKLSGGDLDGDEYLIIWNPLFLPKPEINSHPPAIYD--SEKVHLEKFLEFTDMKRAFLS 755
Query: 546 YIVNDSLGVICNAHVVHADLEPDKARSNQCLE----LAKLSTIAVDFSKTG 592
+ S V+ V H + C E L++L +I VD KTG
Sbjct: 756 QLY--SKFVLSRISVSHKE---SCMNIGMCAEVTKSLSQLISITVDAPKTG 801
>gi|407036402|gb|EKE38145.1| RNA-directed RNA polymerase, putative [Entamoeba nuttalli P19]
Length = 1026
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 140/533 (26%), Positives = 224/533 (42%), Gaps = 91/533 (17%)
Query: 113 NEERHTTIYERVLSTLRNGIVIGDKK-------FETLAFSNSQVKDNSMWMFASRPELTA 165
N E+ + ER+ + L +I K F+ L + SQ + + W ++ T
Sbjct: 307 NNEKRMQVMERLETDLMCFYMIKGYKSFFQKRYFQFLLSNPSQSRSGACWFIDNQDGKTT 366
Query: 166 ADIRESMG-DFRD--IKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYC 222
+S+G D + IKN R G S + + I++I D+ E+ Y
Sbjct: 367 MAAYQSLGVDLKSPKIKNAGILLMRTGLFGSDSIATVGIYPQQIKVIDDITNENG---YT 423
Query: 223 FSDGIGKISAELAEIV----AKNCGFTIYT--PSAFQIRYGGYKGVVAVDPTSSTK-LSL 275
FSDG+G+I LA+ V +N I + P AFQIR+ G KGV+ VD T+ +
Sbjct: 424 FSDGVGRIGYPLAKKVLNEYKRNSNLFIKSDEPYAFQIRFAGVKGVLTVDRLDMTENIYF 483
Query: 276 RKSMLKYKSESTS---LDILANSKYQPCFLNRQLITLLSTLGI--RDHVFEKKQ------ 324
R S +K ++ + L ++ +++ +N QL L L I + + KQ
Sbjct: 484 RPSQIKIEALPKTIQKLRVIQIPQFRSGRMNEQLALGLEYLQIPPSNFISSAKQYLKKYF 543
Query: 325 -----REGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQT 379
RE ++ +P+ +M+S N + +E PF+
Sbjct: 544 SVTPNREIISLFQRFTNNPVIEVALKIIMASNGNQKIYEE-----------PFIRATSLV 592
Query: 380 FRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSG 439
R S L E + I N +MG +DE+G LE G+VF+Q + +
Sbjct: 593 LRMSLLSEKTDFIKFDIDNSAFLMGVMDESGLLEEGEVFIQVT---------------TP 637
Query: 440 ELGVVEGKVVVAKNPCLHPGDMRVLRAV----------DVPSLHHMVDCVVFPAKGKRPH 489
+ + +++V K P HPGD +L V L ++ D +VF +KG RP
Sbjct: 638 TVTIPSSRLLVVKFPATHPGDFVLLNNVVDKINSEKKKGFERLTYLRDVIVFSSKGNRPD 697
Query: 490 TNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAP-----EKV-LARDMTIEDVEEYF 543
N+ SG DLDGD Y + W+ +P P ++ AP EKV L + + D++ F
Sbjct: 698 PNKLSGGDLDGDEYLIIWNPLFLP----KPEIHSHAPATYDSEKVHLEKFLEFTDMKRAF 753
Query: 544 ADYIVNDSLGVICNAHVVHADLEPDKARSNQCLE----LAKLSTIAVDFSKTG 592
+ S V+ V H + C E L++L +I VD KTG
Sbjct: 754 LSQLY--SKFVLSRISVSHKE---SCMNIGMCAEVTKSLSQLISITVDAPKTG 801
>gi|443920944|gb|ELU40764.1| calcium:hydrogen antiporter [Rhizoctonia solani AG-1 IA]
Length = 862
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 160/301 (53%), Gaps = 35/301 (11%)
Query: 56 VLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEE 115
V +TP+ V+ + SNRV+R YP +F+R++F DE + ++ T +
Sbjct: 522 VKITPTAVHLN----EQSNRVIRRYPGYETHFIRVAFTDEADGRARFEYEVDTMAFTQK- 576
Query: 116 RHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWM---FASRPELTAAD-IRES 171
RV L+N I + D+++E L +S S ++N+ + F + E+ + IR S
Sbjct: 577 -------RVGKFLKNAIRLCDREYELLGYSQSGFRENACFFVAPFEWKDEIINGEYIRYS 629
Query: 172 MGDFRDIKNV-AKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKI 230
+G+F + + A+Y AR+ Q+F S+ ++ + S+I I +++ D + FSDG G I
Sbjct: 630 LGNFDKVIDCPARYGARMSQAFSSTSQSTMLQESEIRHIMELKNRRDEM---FSDGCGTI 686
Query: 231 SAELAEIVAKNC---------GF---TIYTPSAFQIRYGGYKGVVAVDPTSSTK-LSLRK 277
S ELA+ V K+ GF P AFQIR GG KG+V +DP + L LR
Sbjct: 687 SRELAKDVWKSMLQHLPPSRQGFHHENELPPPAFQIRIGGSKGMVRLDPKLEGRVLCLRP 746
Query: 278 SMLKYKSE-STSLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAIL 335
SM K+++E SL+I A Y PCFLNR L+ LL + G+ D VF ++ +A+ + +
Sbjct: 747 SMTKFEAEHDLSLEIARAFVTYSPCFLNRPLVVLLWSGGVEDDVFLNLMKDNLAETMSGM 806
Query: 336 T 336
T
Sbjct: 807 T 807
>gi|402584478|gb|EJW78419.1| hypothetical protein WUBG_10674, partial [Wuchereria bancrofti]
Length = 355
Score = 125 bits (315), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 102/342 (29%), Positives = 159/342 (46%), Gaps = 55/342 (16%)
Query: 494 SGSDLDGDVYFVCWDHELIPPLQFPPMDYTPA--PEKVLARDMTIEDVEEYFADYIVNDS 551
+GSDLDGD Y V WD +++ PMD++ P +L D + ++ ++ +Y++ DS
Sbjct: 2 AGSDLDGDEYSVIWDDQMLFSYNEEPMDFSKLVRPPDILKEDEVVREMRRFYVEYVMQDS 61
Query: 552 LGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVA--------ATIPSGL-- 601
+G+I NA +V++D S+ C+ +A+ + +VDF KTG ++ P G
Sbjct: 62 IGIIANAFLVNSDTF--GIASDVCMSIAEKHSQSVDFPKTGQPPKPLVKEWSSRPDGKMI 119
Query: 602 ---RVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDME 658
R E +PDFM K + Y S R++G+L+R ++ + TI S K + D +E
Sbjct: 120 PPERPERWPDFMCKTHEPSYVSTRLVGQLFRRIR-LIDDVLTITSTHKAQSEVKVDPLLE 178
Query: 659 VDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGC---------------IMEM 703
G+E Y DA T Y + LMD YGI+ E ++ SGC + +
Sbjct: 179 YIGWESYENDAVLNLTAYSAHIRALMDNYGIEDEYQLYSGCFCKIRNRISDRDGDDMSQF 238
Query: 704 AKSFDKKRDLEAII--FAVKSLKKEARAWFNKKNESDSSHEDVYA-------------KA 748
SF +R L I F + F + + D ++DV KA
Sbjct: 239 NTSFIIERKLTNIFMCFRCNFFAEFGDFMFCTEQDDDLRNKDVIERRYCKYPTVEMKRKA 298
Query: 749 SAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKLIEIKR 790
SA+Y V Y + KE+G LSFPW D L +IK+
Sbjct: 299 SAYYIVCYRKA----MKEKG---ERLLSFPWIAWDILADIKK 333
>gi|134077480|emb|CAK40045.1| unnamed protein product [Aspergillus niger]
Length = 377
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 126/245 (51%), Gaps = 29/245 (11%)
Query: 448 VVVAKNPCLHPGDMRVLRAVDVPSLH---HMVDCVVFPAKGKRPHTNECSGSDLDGDVYF 504
V+V ++P LH GD++ + V P H + + +VF +KG R ++ SG DLDGD++
Sbjct: 2 VLVTRSPALHDGDIQFAQNVIPPDNHPLAELTNSIVFSSKGYRDLPSQLSGGDLDGDIFN 61
Query: 505 VCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHAD 564
V WD + P F P DY + R + +D+ ++F D++ D LGVI H++ AD
Sbjct: 62 VIWDTDAYPVRTFAPADYPRVSPVDIGRPVERDDMAQFFLDFMKTDHLGVIATRHMIMAD 121
Query: 565 LEPDKARSNQCLELAKLSTIAVDFSKTGVA---ATIPSG--LRVEIYPDFMEKQDKTCYE 619
E + C +LA+L + AVDFSKTG+ + IP G R ++YP F + Y
Sbjct: 122 QEAEGTSHPVCRKLAQLHSTAVDFSKTGIPVQMSEIPKGKPFRPDLYP-FHK-----YYR 175
Query: 620 SQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKT-EYDN 678
S++++GKLYR V E + D +V ED + F + T E +
Sbjct: 176 SEKILGKLYRGV--------------DERQIWQEDIQSKVQPNEDEFWNEFLWSTLERCD 221
Query: 679 RLGNL 683
++GNL
Sbjct: 222 KIGNL 226
>gi|241636823|ref|XP_002410661.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
gi|215503493|gb|EEC12987.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
Length = 385
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 157/315 (49%), Gaps = 35/315 (11%)
Query: 495 GSDLDGDVYFVCWDHELIPPLQFP-----PMDYTPAPEKVLARDMTIEDVEEYFADYIVN 549
GSDLDGD Y V W+ P L FP PM ++ + A + E + ++ +YI+N
Sbjct: 12 GSDLDGDEYIVIWE----PDLFFPGSNKTPMTFSDSSSVGSADENLEEGMIKFICNYIIN 67
Query: 550 DSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDF 609
D++G++ NAH+ +D D S CL +AK + VDF+KTG+A+ + + +YPDF
Sbjct: 68 DNVGIMSNAHLAWSDQLEDGIFSPLCLGVAKKISTCVDFAKTGLASCLDRHEKPLLYPDF 127
Query: 610 MEK-QDKTCYESQRVIGKLYRAVKDIAPPTAT-IKSFTKEVA-MQSYDTDMEVDGFEDYI 666
MEK K Y S+RV+G LYR + + T + T ++A + T E G++D+
Sbjct: 128 MEKGGSKDTYRSKRVLGHLYRLHRSLQAVINTDFMARTGQLAEGDGHCTLFEYPGWKDHQ 187
Query: 667 TDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMA---KSFDKKRDLEAIIF-AVKS 722
A K Y ++ ++ YG+ +E E++SG I+ ++ KS + K ++A++ S
Sbjct: 188 EVAEKALAAYTVQMSRILHQYGVGSEGEVVSGIIVNVSDYNKSNEDKNSVKALVAKQYAS 247
Query: 723 LKKEARAWF----NKKNESDSSHEDVYAK------ASAWYHVAYHPSYWGRYKEEGMNRT 772
L K R F S+ + D+ K ASAWY V Y G + E+
Sbjct: 248 LMKLTRDTFFSDVTAACNSNGASTDIAKKTILLQMASAWYMVTYA----GVWHEQNCQ-- 301
Query: 773 HFLSFPWCIHDKLIE 787
SFPW ++E
Sbjct: 302 ---SFPWPGFRSMVE 313
>gi|391343490|ref|XP_003746042.1| PREDICTED: uncharacterized protein LOC100901929 [Metaseiulus
occidentalis]
Length = 1356
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 168/678 (24%), Positives = 285/678 (42%), Gaps = 80/678 (11%)
Query: 137 KKFETLAFSNSQVKDNSMWMFASRP--ELTAADIRESMGDFRDIKNVAKYAARLGQSFGS 194
K + L S SQ +D S W +A T + +RE +G N+A+ A F
Sbjct: 457 KTYYFLGNSKSQAEDFSFWAYAIEKGDTDTISSVRERLGI---TGNLARRIAVQDLVFAE 513
Query: 195 SREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQI 254
+ A+ +D S + E ED F GIG+IS V +NC ++ SA ++
Sbjct: 514 ALGAVSIDPSWV----SEESEDVPAASDFKHGIGRISEAALRTVVENCHWSRTLCSAIRV 569
Query: 255 RYGGYKGVVAVDPT-SSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTL 313
+GG +G + DP+ +++ RKS KSE ++L ++ S+ + +R I+ LS+
Sbjct: 570 VHGGRRGTLVYDPSLEGSRIIYRKSQTVIKSEDSTLYLIERSEIKNAAFDRTFISTLSSK 629
Query: 314 GIRDHVFEKKQREG-VAQLDAILTDPLKAHEALELMSSGENTNVLKELL-----MCGYKP 367
D + E+ E + L +LT+PL + + VL + + GY
Sbjct: 630 A--DGLTEEFSVEDFLTPLYELLTEPLSLYSTGARVKRVAAEPVLDHIFREGEDLYGYDK 687
Query: 368 DVEPFLLMMLQTFRASNLLELR--TRTRIFIQNGRAMMGCLDETGTLESGQVFVQ-CSAS 424
+ + Q R L LR + + + N +M +DE LE G+VF+Q CS
Sbjct: 688 RGDG---LFRQAVRCKALKALRDLKKLKQHMTNAYEIMPVVDELELLEEGEVFIQVCSP- 743
Query: 425 RRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVP----SLHHMVDCVV 480
G+L V+ G +V+A+ +H + R + AV+ P +L H+ +CVV
Sbjct: 744 -------------GGDLRVLSGDLVLARKDAMHLEEFRRVTAVNRPDVVGALGHLFNCVV 790
Query: 481 FPAK-GKRPHTNECSGSDLDG--DVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIE 537
P+K G RP + G D+ + + P F D P +A ++
Sbjct: 791 LPSKGGSRPLEFLAREASYAGESDIILIASHPDEEPAFLFKRND--PPRSTSIAVGPAVD 848
Query: 538 ---DVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGV- 593
D+E +F +Y+ S AD P A S C+ + + + G
Sbjct: 849 SGCDIETHFFNYLSYVSFNDFEEVFCALADYLPQHASSESCIRAGAQQRLLDKYRRGGRE 908
Query: 594 AATIPSGLRVEIYPDFMEK-QDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQ- 651
A +P +V +P F+EK D Y S R + +Y+ + I K F + + M
Sbjct: 909 GAPLP---KVVKFPHFLEKISDGKTYCSTRPLAHIYQKGRAI-----DTKYFEETLMMTD 960
Query: 652 --SYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIME---MAKS 706
++ +++V+G + + A + + LG + + I + E+L+G I S
Sbjct: 961 DVTFQPELQVEGSQVFAEVAERDMRSFKRELGGIAALHEISVD-EVLTGTIFSNRGQYSS 1019
Query: 707 FDKKRDLEAII-FAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYK 765
+++ ++EA + VK L R F KK +S +V K SA+Y + G Y
Sbjct: 1020 SERRSNIEATVKLQVKHLALICRRRF-KKGVEKASEVEVLQKISAYYVASREFPDGGGY- 1077
Query: 766 EEGMNRTHFLSFPWCIHD 783
+FPW + D
Sbjct: 1078 ----------AFPWMLPD 1085
>gi|253743974|gb|EET00246.1| RNA-directed RNA polymerase, putative [Giardia intestinalis ATCC
50581]
Length = 1989
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 124/481 (25%), Positives = 205/481 (42%), Gaps = 121/481 (25%)
Query: 183 KYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVA--- 239
K R G FG S + V D+ IIPD + D Y F+DG G+IS +L +A
Sbjct: 440 KICTRRGLCFGKSLPTIKVKEQDVHIIPDRQYHD----YVFTDGAGEISYDLMLEIAVCL 495
Query: 240 ------------------------------------------KNCGFTIYTPSAFQIRYG 257
K +I PSA Q+R+
Sbjct: 496 DQIKTEQLNTNRDIGNFSDYNDDNEGEDGGTEDATLDLQTDLKVLSNSIQVPSALQMRWA 555
Query: 258 GYKGVVAVDPTSSTK-LSLRKSMLKYK-----SESTSLDILANSKYQPCFLNRQLITLLS 311
G KGV+ ++ + + L KS +K+ +L++L + +N Q+I LLS
Sbjct: 556 GAKGVLILNALLPPRTILLHKSQVKFTIPNPTETQQTLEVLRVAYPSRGMINMQIIVLLS 615
Query: 312 TLGIRDHVFEKKQREGVAQLDAILTDPLKA--HEA--LELMSSGENTN---VLKELLMCG 364
+G+ D VF + + Q + ++P+ H+A +L+S ++ ++ ++LM G
Sbjct: 616 EMGVPDEVFLNLVHQDL-QKALVFSEPMDRCRHQADLYQLVSRASRSSSGKLILQMLMAG 674
Query: 365 YKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFV----- 419
EP L +L + L ++ R + + R ++G D L+ G+V++
Sbjct: 675 VDI-TEPCLQFVLMKLQMMQLRSMKANMRFSVPDSRILIGIYDCFNLLKEGEVYIGLQSP 733
Query: 420 ----QCSASRRREFLDNSCNNRS-------------GELG--VVEGKVVVAKNPCLHPGD 460
+ AS + + ++ ++ S E G VEG+VVVAKNPC + GD
Sbjct: 734 LVISKWVASTHLKAISDAQHDTSISLSSHPHIFDMASEFGPSCVEGRVVVAKNPCFYRGD 793
Query: 461 MRVLRAVD--------------VPSLHHMV----------DCVVFPAKGK-RPHTNECSG 495
+RV +AV+ VPSL V + FP + RP + SG
Sbjct: 794 VRVYQAVNLLERLKREASEKTLVPSLPPFVTQEAIKAMYKGVICFPQYYEGRPMADCLSG 853
Query: 496 SDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDM-----TIEDVEEYFADYIVND 550
SDLDGD+Y+V WD +I +Q+ +Y PA + + ++ +EDVE + + N+
Sbjct: 854 SDLDGDIYWVSWDASIIGTIQY---EYEPASFQANSGEINTCAPNLEDVEAGLGNLLRNE 910
Query: 551 S 551
S
Sbjct: 911 S 911
>gi|15419599|gb|AAK97084.1|AF293414_1 RNA-dependent RNA-polymerase [Giardia intestinalis]
Length = 1377
Score = 122 bits (306), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 118/483 (24%), Positives = 203/483 (42%), Gaps = 115/483 (23%)
Query: 172 MGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKIS 231
+GD ++++ K R G FG S + V D++I+ D E Y F+DG G+IS
Sbjct: 261 LGDIKEVQ-ACKICTRRGLCFGKSLPTIKVREEDVQIVSDKEYNG----YVFTDGAGEIS 315
Query: 232 AELAEIVA-----------------------------------------KNCGFTIYTPS 250
+L +A K I PS
Sbjct: 316 YDLMLEIALCLDKLKIEQLHKDTETYYDNGFADTNEDSEHTVPHLQPNLKTASNLIQVPS 375
Query: 251 AFQIRYGGYKGVVAVDPTSSTKLSL-RKSMLKYK-----SESTSLDILANSKYQPCFLNR 304
A Q+R+ G KGV+ ++ + L KS +K+ +L+IL ++ +N
Sbjct: 376 AVQMRWAGTKGVLILNALLPPRTILFHKSQVKFSIPNPTETQQTLEILRVAQRSKGMINM 435
Query: 305 QLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKA--HEA--LELMSSGENTN---VL 357
Q+I LLS +G+ D VF + + Q + +P+ H+A +L+S +++ ++
Sbjct: 436 QIIVLLSEMGVPDDVFLNLVYQDL-QKTLLFLEPVDRCRHQADLYQLVSRASHSSSGKLI 494
Query: 358 KELLMCGYKPDV-EPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQ 416
++LM G D+ EP L +L + L ++ R ++ + R +G D L+ G+
Sbjct: 495 LQMLMAGV--DITEPCLQFLLMKLQMMQLRSMKANMRFYVPDSRIFVGVYDCFDLLKEGE 552
Query: 417 VFV---------QCSASRRREFLDNSCNNRSG----------------ELGVVEGKVVVA 451
V+V + +A+ + + N + + VEG+VVVA
Sbjct: 553 VYVGLQEPLSISKWAAATHLKAMSNDTQQEALLPPDLDLQISDIAVGLNISCVEGRVVVA 612
Query: 452 KNPCLHPGDMRVLRAVDV--------------PSLHHMV----------DCVVFPAKGK- 486
KNPC + GD+R+ AV++ P L V + FP +
Sbjct: 613 KNPCFYRGDVRIYHAVNIFERLRREASRQNLKPVLPSFVAQEAIRGMYRGVICFPKYYEG 672
Query: 487 RPHTNECSGSDLDGDVYFVCWDHELIPPLQ--FPPMDYTPAPEKVLARDMTIEDVEEYFA 544
RP T+ SGSDLDGD+Y+V WD L+ +Q + P + P ++ A + + D+E
Sbjct: 673 RPMTDCLSGSDLDGDIYWVSWDASLLGTIQREYEPASFQANPGEIDAHALDLRDIEAGLG 732
Query: 545 DYI 547
+ +
Sbjct: 733 NLL 735
>gi|159120120|ref|XP_001710276.1| RNA-directed RNA polymerase, putative [Giardia lamblia ATCC 50803]
gi|21666386|gb|AAM73688.1|AF393743_1 RNA dependent RNA polymerase [Giardia intestinalis]
gi|157438394|gb|EDO82602.1| RNA-directed RNA polymerase, putative [Giardia lamblia ATCC 50803]
Length = 2001
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 118/476 (24%), Positives = 201/476 (42%), Gaps = 115/476 (24%)
Query: 172 MGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKIS 231
+GD ++++ K R G FG S + V D++I+ D E Y F+DG G+IS
Sbjct: 429 LGDIKEVQ-ACKICTRRGLCFGKSLPTIKVREEDVQIVSDKEYNG----YVFTDGAGEIS 483
Query: 232 AELAEIVA-----------------------------------------KNCGFTIYTPS 250
+L +A K I PS
Sbjct: 484 YDLMLEIALCLDKLKIEQLHKDTETYYDNGFADTNEDSEHTVPHLQPNLKTASNLIQVPS 543
Query: 251 AFQIRYGGYKGVVAVDPTSSTKLSL-RKSMLKYK-----SESTSLDILANSKYQPCFLNR 304
A Q+R+ G KGV+ ++ + L KS +K+ +L+IL ++ +N
Sbjct: 544 AVQMRWAGTKGVLILNALLPPRTILFHKSQVKFSIPNPTETQQTLEILRVAQPSKGMINM 603
Query: 305 QLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKA--HEA--LELMSSGENTN---VL 357
Q+I LLS +G+ D VF + + Q + +P+ H+A +L+S +++ ++
Sbjct: 604 QIIVLLSEMGVPDDVFLNLVYQDL-QKTLLFLEPVDRCRHQADLYQLVSRASHSSSGKLI 662
Query: 358 KELLMCGYKPDV-EPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQ 416
++LM G D+ EP L +L + L ++ R ++ + R +G D L+ G+
Sbjct: 663 LQMLMAGV--DITEPCLQFLLMKLQMMQLRSMKANMRFYVPDSRIFVGVYDCFDLLKEGE 720
Query: 417 VFV---------QCSASRRREFLDNSCNNRSG----------------ELGVVEGKVVVA 451
V+V + +A+ + + N + + VEG+VVVA
Sbjct: 721 VYVGLQEPLSISKWAAATHLKAMSNDTQQEALLPPDLDLQISDIAVGLNISCVEGRVVVA 780
Query: 452 KNPCLHPGDMRVLRAVDV--------------PSLHHMV----------DCVVFPAKGK- 486
KNPC + GD+R+ AV++ P L V + FP +
Sbjct: 781 KNPCFYRGDVRIYHAVNIFERLRREASRQNLKPVLPSFVAQEAIRGMYRGVICFPKYYEG 840
Query: 487 RPHTNECSGSDLDGDVYFVCWDHELIPPLQ--FPPMDYTPAPEKVLARDMTIEDVE 540
RP T+ SGSDLDGD+Y+V WD L+ +Q + P + P ++ A + + D+E
Sbjct: 841 RPMTDCLSGSDLDGDIYWVSWDASLLGTIQREYEPASFQANPGEIDAHALDLRDIE 896
>gi|241168347|ref|XP_002410232.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
gi|215494759|gb|EEC04400.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
Length = 632
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/314 (30%), Positives = 156/314 (49%), Gaps = 30/314 (9%)
Query: 494 SGSDLDGDVYFVCWDHELI-PPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSL 552
+GSDLDGD Y V W+ +L P PM ++ + + + + ++ +YI ND++
Sbjct: 63 TGSDLDGDEYIVIWEEDLFFPGCNKQPMVFSDSSSTATSNNSL--GMIQFVCNYIKNDNV 120
Query: 553 GVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEK 612
G++ NAH+ AD E D S +CL++A+ + +DF+KTG A++ + YPDFMEK
Sbjct: 121 GIMSNAHLAWADKEGDGIFSKRCLKIAQKISTCLDFAKTGETASLDRDEKPLQYPDFMEK 180
Query: 613 QD-KTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDM-EVDGFEDYITDAF 670
K Y SQ V+G LYR + + +T +F A + + E G+ D+ A
Sbjct: 181 GGFKDTYRSQHVLGHLYRLHRSLEAVVST--NFQDRAADGDGNHALFEYPGWRDHEESAQ 238
Query: 671 KYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMA---KSFDKKRDLEAII-FAVKSLKKE 726
Y +R+ ++ +GIKTE E++SG I ++ KS K +EA++ + L K
Sbjct: 239 TALAVYGSRMEQILRQHGIKTEGEVVSGIINSVSDYNKSKTDKASVEALVEKQYRDLVKS 298
Query: 727 ARAWFNKKNESDSSHEDVYAK----------ASAWYHVAYHPSYWGRYKEEGMNRTHFLS 776
R F + ++ V + ASAWY V Y G ++E ++ S
Sbjct: 299 TREQFFRDVDAACQSLKVPTEAGKLTVLLQVASAWYMVTYA----GVWQE-----SNCYS 349
Query: 777 FPWCIHDKLIEIKR 790
FPW + D L+ + +
Sbjct: 350 FPWSVSDVLLLVMK 363
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 26/35 (74%), Gaps = 2/35 (5%)
Query: 388 LRTRTRIFI--QNGRAMMGCLDETGTLESGQVFVQ 420
LRTRTRI + GR M+G +DET +LE G+VFVQ
Sbjct: 2 LRTRTRIAVPPNKGRNMLGVVDETYSLEYGEVFVQ 36
>gi|401412157|ref|XP_003885526.1| hypothetical protein NCLIV_059230 [Neospora caninum Liverpool]
gi|325119945|emb|CBZ55498.1| hypothetical protein NCLIV_059230 [Neospora caninum Liverpool]
Length = 1367
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 135/510 (26%), Positives = 214/510 (41%), Gaps = 103/510 (20%)
Query: 51 IYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFL--RLSFVDEDLDKLYSTVLSPL 108
I V +L TP KV G L +RV R Y E+ L R++FV+ED P+
Sbjct: 525 IPVLHLLATPLKVLVRGIYCELGSRVTRQYAREVATGLLVRVAFVEEDG--------RPM 576
Query: 109 ISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMF--ASRPELTAA 166
SS + + ++ ER+ + G+ +G ++++ A S SQ+++ WM + L+A
Sbjct: 577 SSSLHRAQDESLQERMRLMMVGGLSVGHERYKFFAASLSQLREGCCWMIRVSGDTRLSAE 636
Query: 167 DIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDV------------EV 214
I +G F + RLG F S+ A+ + ++ +IPDV
Sbjct: 637 AILSRLGVFDSSISPGVLTKRLGVCFSSTLPAIDIRDEEMLLIPDVTSSAAAPTAREEAA 696
Query: 215 EDDG--------------ITYCFSDGIGKISAEL-AEIVAKNCGFTIYTPSAFQIRYGGY 259
E++G + F+DG G IS +L IVA+ ++T SAFQIR GG
Sbjct: 697 ENEGRQARARPIPLAVDSPEFVFTDGSGAISLDLWRRIVARLP--ALHTSSAFQIRLGGI 754
Query: 260 KGVVAVDPT-----------SSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLIT 308
KG++ + P S + + +SM K+ S S L++ S+ P +LNRQ+I
Sbjct: 755 KGMLVLHPAFPRPVPHHPAESLKHILVSQSMQKFHSSSRCLEVNDFSRRFPYYLNRQVIL 814
Query: 309 LLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPD 368
LL TLG+ VFE+ Q+ + L + T A + L ++ +N + +C
Sbjct: 815 LLDTLGVGFPVFERLQKRMLQFLRDVDTR-AGAIKFLSTLAIDQNLGMSSFAQVC----- 868
Query: 369 VEPFLLMMLQTFRASNLLELRTRT---------------RIFI---------------QN 398
L + R +NL + T R+F
Sbjct: 869 ----LDFIALRGRGANLFGVPDFTHSLAYDHGWRSSPSARVFAGLPEVFVHVTRSPFSDE 924
Query: 399 GRAMMGCLDETGTLESGQVFVQCSASRRR--EFLDNSCNNRSGELGVVEGKVVVAKNPCL 456
G A + + S + Q +RRR F S E V++G V V +NPCL
Sbjct: 925 GMARHVAVATGKSWLSAEADAQAERARRRLGRFPGGSVAAFGSE--VIQGVVAVCRNPCL 982
Query: 457 HPGDMRVLRAV-------DVPSLHHMVDCV 479
PGD+++ AV D P L + C+
Sbjct: 983 FPGDIQLCFAVAHGDLPDDSPLLRPLTGCL 1012
>gi|397621217|gb|EJK66181.1| hypothetical protein THAOC_12913, partial [Thalassiosira oceanica]
Length = 906
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 103/366 (28%), Positives = 174/366 (47%), Gaps = 35/366 (9%)
Query: 47 DDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEI----DNFLRLSFVDEDLDKLYS 102
DD + + +VL++P ++ + + +SNR VR + + F+RL+ DE+ DKL+
Sbjct: 557 DDFCVSLPRVLLSPLRLSITAFQSEMSNRFVRLFINRHKFSESAFVRLTIGDENGDKLFG 616
Query: 103 TVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPE 162
LS + ER+ + G+ +G K + LA+S+SQ+K+ SMW+ +
Sbjct: 617 GELS-----------RQVEERIRQLILQGVRLGGKTYHFLAYSSSQLKEQSMWLVCAERG 665
Query: 163 LTAADIRESMGDFRDIKNVAKYAARLGQSFG-----SSREALHVDSSDI-EIIPDVEVED 216
+ +R+ MGDF ++ +KYAAR+GQ F S+R D + + +PD+
Sbjct: 666 WSVDSMRDLMGDFSMCESPSKYAARVGQCFSTTVTVSTRSHRRNDGLRVKDDLPDIPSSI 725
Query: 217 DGITYCFSDGIGKISAELAEIVAKNCGFTIYTP------SAFQIRYGGYKGVVAVDPTSS 270
+ + + SDG G I E+ ++ Y P SA Q R GG KGV+ ++
Sbjct: 726 ESLVH--SDGCGLIRHEV--LLKSVLPLVPYAPRFKSDISAIQFRCGGAKGVLVGWDFNT 781
Query: 271 TKLSLRKSMLKYKSESTSLDILA-NSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVA 329
+ L+ S+ S+ + +Q RQ+I L + LGI VF Q E ++
Sbjct: 782 LGIQNYDVCLR-PSQGVSICMRGIGGTHQLGIDWRQVILLGTHLGISGEVFLSLQDEMMS 840
Query: 330 QLDAILTDPLKAHEALELMSS--GENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLE 387
L+ +L D A + + + E L ++L G KP +PFL L R+ +L+
Sbjct: 841 SLNRMLVDARFAAQYVPFIGGIDAEIVTSLCDMLASGLKPSRDPFLYSCLHATRSHHLMG 900
Query: 388 LRTRTR 393
LR + R
Sbjct: 901 LRKKAR 906
>gi|317031168|ref|XP_001392956.2| hypothetical protein ANI_1_2224074 [Aspergillus niger CBS 513.88]
Length = 1206
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 126/275 (45%), Gaps = 53/275 (19%)
Query: 446 GKVVVAKNPCLHPGDMRVLRAVDVPSLH---HMVDCVVFPAKGKRPHTNECSGSDLDGDV 502
G V+V ++P LH GD++ + V P H + + +VF +KG R ++ SG DLDGD+
Sbjct: 797 GMVLVTRSPALHDGDIQFAQNVIPPDNHPLAELTNSIVFSSKGYRDLPSQLSGGDLDGDI 856
Query: 503 YFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVH 562
+ V WD + P F P DY + R + +D+ ++F D++ D LGVI H++
Sbjct: 857 FNVIWDTDAYPVRTFAPADYPRVSPVDIGRPVERDDMAQFFLDFMKTDHLGVIATRHMIM 916
Query: 563 ADLEPDKARSNQCLELAKLSTIAVDFSKTGVA---ATIPSGLRVEIYPDFM--------- 610
AD E + C +LA+L + AVDFSKTG+ + IP G PDFM
Sbjct: 917 ADQEAEGTSHPVCRKLAQLHSTAVDFSKTGIPVQMSEIPKGKPFR--PDFMALGPVARIH 974
Query: 611 EKQD---------------------KTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVA 649
K D Y S++++GKLYR V E
Sbjct: 975 NKSDIELEEYVIQAAYDEDDDMEPFHKYYRSEKILGKLYRGV--------------DERQ 1020
Query: 650 MQSYDTDMEVDGFEDYITDAFKYKT-EYDNRLGNL 683
+ D +V ED + F + T E +++GNL
Sbjct: 1021 IWQEDIQSKVQPNEDEFWNEFLWSTLERCDKIGNL 1055
>gi|405974294|gb|EKC38950.1| Putative RNA-dependent RNA polymerase 1 [Crassostrea gigas]
Length = 299
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 134/248 (54%), Gaps = 20/248 (8%)
Query: 53 VNKVLVTPSK-VYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISS 111
V ++TPS+ + + L+ R++R Y + D F+ L + D+D DK+ + P S
Sbjct: 27 VRMAVLTPSRFILLPNKPVHLT-RILRLYNN--DYFILLDYRDDDFDKVCG--IHPYGS- 80
Query: 112 TNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRES 171
I + + NG I D+ ++ L SNS+++++S W F+S +TA IR++
Sbjct: 81 ------MKIVQDMKRFFINGFEIHDRHYDFLGCSNSELRNHSFWFFSSYDGITAEFIRQN 134
Query: 172 MGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKIS 231
GD + VA Y +++G F S L ++ E+ + +V +G+ CF+DGIGKIS
Sbjct: 135 CGDLSMERCVASYVSKIGLCFSPSLSTLTMEEHQ-EVRFEEDVRRNGL--CFTDGIGKIS 191
Query: 232 AELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK---LSLRKSMLKYKSESTS 288
LA VAK PS FQI YGG KG++A+DP+ L +R SM K++S S S
Sbjct: 192 RRLAAKVAKKMNLNT-VPSVFQICYGGCKGMIALDPSLGENREILVIRHSMKKFESSSKS 250
Query: 289 LDILANSK 296
L++L S+
Sbjct: 251 LEVLQVSR 258
>gi|290988454|ref|XP_002676936.1| predicted protein [Naegleria gruberi]
gi|284090541|gb|EFC44192.1| predicted protein [Naegleria gruberi]
Length = 1745
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 117/415 (28%), Positives = 189/415 (45%), Gaps = 80/415 (19%)
Query: 249 PSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYK---------SESTSLDILANSKYQP 299
PSAFQIR+ G KG++ +P + LR+SM+K+ + + +I +P
Sbjct: 552 PSAFQIRFRGAKGMLLQNPNVKG-IVLRESMVKFNVDLDEDLDEEDESLSNIHVVGYSEP 610
Query: 300 ---CFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLK--AHEALELMSSGENT 354
F N ++ ++S G D G + + I+ + K ++ L+ S+ + +
Sbjct: 611 SNFAFANSTILYMMS--GCVD---------GGEKFEGIIMNMWKDYVNDILKTYSNEDTS 659
Query: 355 NVLKE---------LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGC 405
++K+ L + G DV L + FR + LL L+ + IQN R + G
Sbjct: 660 QLMKKYFKEGDFHALNIFGLTKDVA--LAFLAGPFR-TQLLNLK----LPIQNARRVYGV 712
Query: 406 LDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLR 465
D LE +VFV+ G L +EG + + K PCLH GD+R+L+
Sbjct: 713 CDPLEVLEPDEVFVRIRME-------------DGTLKTLEGTIAITKEPCLHRGDLRLLK 759
Query: 466 AVDVPSLHHMVDCVVFPAKG-KRPHTNECSGSDLDGDVYFVCWDHELIPPL--QFPPMDY 522
A + SL ++ + +VFP KG KRP N +GSDLDGD Y V WD L+ QF P ++
Sbjct: 760 AKKIESLEYLSEVIVFPIKGEKRPIPNMITGSDLDGDKYLVIWDEPLVSSFVQQFEPGNF 819
Query: 523 TPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLE-LAKL 581
D IE + F + D +G + +++V E K + + ++ L+ +
Sbjct: 820 ----------DEEIEGEKRNFEPDVFKDWIG-LRHSYVDSYGYEWSKGENWKTMQRLSDI 868
Query: 582 STIAVDFSKTGVAATIPSG-LRVEI------YPDFMEKQDKTCYE-SQRVIGKLY 628
+AVD K G T +G + +I YP F + K S V+GK+Y
Sbjct: 869 VNMAVDAPKKG--KTFKAGAMEKDIVRNFPKYPHFHNSKTKEAVRVSTSVVGKMY 921
>gi|268565349|ref|XP_002639417.1| Hypothetical protein CBG04006 [Caenorhabditis briggsae]
Length = 797
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 136/276 (49%), Gaps = 30/276 (10%)
Query: 449 VVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWD 508
+V K P + GD+R+ AVD+P LHH+ D +VFP G R +E +GSDLDGD Y V WD
Sbjct: 1 MVTKFPTMCAGDIRMYEAVDIPELHHLTDVIVFPQSGPRSQPDEMAGSDLDGDEYAVIWD 60
Query: 509 HELIPPLQFPPMDY-TPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHAD--- 564
L P Y + K + ++FA + + +GV H+ +D
Sbjct: 61 PILFFQKNAPAFGYCSEKKNKQFTLGEMDHKMNDFFALSMRQEDVGVTAINHLHQSDQFG 120
Query: 565 LEPDKARSNQCLELAKLSTIAVDFSKTGVAATIP----------SGL-----RVEIYPDF 609
++ D A S L + + +A+DF+K+G +P +GL R E PDF
Sbjct: 121 IDSDVANS-----LVEKNAMALDFAKSG-DPPLPLTNEGRINPETGLWEPPERSERRPDF 174
Query: 610 MEKQ--DKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYIT 667
+ + Y S R++G L+R ++ I + S K+V + D + +G+E +
Sbjct: 175 SQSRHAGSASYASSRLLGTLHRELRSIN--DVVMSSSEKQVPV-VIDDLLIWEGWEKHKD 231
Query: 668 DAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEM 703
+A Y+ +L ++M+ +G+ TEAE+ SGC ++
Sbjct: 232 NATLQMIRYNGQLRSIMETFGVATEAEVFSGCFRDI 267
>gi|259482364|tpe|CBF76776.1| TPA: RNA-directed RNA polymerase (Sad-1), putative (AFU_orthologue;
AFUA_3G06790) [Aspergillus nidulans FGSC A4]
Length = 869
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 156/336 (46%), Gaps = 73/336 (21%)
Query: 72 LSNRVVRSYPDEIDNFLRLSFVD-EDLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRN 130
+SN V+R Y + DNFLR+ F D + + ++++TV +T +E + R+ L N
Sbjct: 248 ISNCVIRRYANLADNFLRVRFTDAKHIGRIHATV-----DNTMDE----VLTRIKRALAN 298
Query: 131 GIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAARLGQ 190
GI IG ++E LAF NS
Sbjct: 299 GITIGSTRYEFLAFGNS-----------------------------------------SS 317
Query: 191 SFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYT-- 248
F ++R A+ ++ ++ I D+E G Y FSDG+G+IS LA+IV T
Sbjct: 318 CFSTTR-AISGCTAHVKKIDDIE----GNGYIFSDGVGRISKFLAQIVKSELKIKTPTKE 372
Query: 249 -PSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSESTSLDILANSKYQPCFLNRQL 306
PSA+Q R G KG++ V P + + + +RKS K+ + S L+I+ S++ LNRQL
Sbjct: 373 PPSAYQFRLVGCKGMLIVFPQARPQEVHIRKSQFKFAALSQGLEIIRWSQFTVASLNRQL 432
Query: 307 ITLLSTLGIRDHVFEKKQREGVAQLD-AILTDPLKAH------------EALELMSSGEN 353
I +LSTLGI D VF K + + LD A+ +DP AH + L +GE
Sbjct: 433 ILVLSTLGITDKVFHLKLKTMLRNLDEAMESDPKAAHLLRKYVDPNQVTLTIYLPKNGEK 492
Query: 354 TNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELR 389
+++ + + P + P + +++ A L L+
Sbjct: 493 YEIIEGICILARNPSLHPGGIRVVRAVNAPGLHHLK 528
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 51/71 (71%)
Query: 443 VVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDV 502
++EG ++A+NP LHPG +RV+RAV+ P LHH+ D VV P G R + CSGSDLDGD
Sbjct: 495 IIEGICILARNPSLHPGGIRVVRAVNAPGLHHLKDIVVLPRTGDRDIASMCSGSDLDGDD 554
Query: 503 YFVCWDHELIP 513
+ V WD +L+P
Sbjct: 555 FLVIWDQDLLP 565
>gi|67537240|ref|XP_662394.1| hypothetical protein AN4790.2 [Aspergillus nidulans FGSC A4]
gi|40741170|gb|EAA60360.1| hypothetical protein AN4790.2 [Aspergillus nidulans FGSC A4]
Length = 854
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 156/336 (46%), Gaps = 73/336 (21%)
Query: 72 LSNRVVRSYPDEIDNFLRLSFVD-EDLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRN 130
+SN V+R Y + DNFLR+ F D + + ++++TV +T +E + R+ L N
Sbjct: 233 ISNCVIRRYANLADNFLRVRFTDAKHIGRIHATV-----DNTMDE----VLTRIKRALAN 283
Query: 131 GIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAARLGQ 190
GI IG ++E LAF NS
Sbjct: 284 GITIGSTRYEFLAFGNS-----------------------------------------SS 302
Query: 191 SFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYT-- 248
F ++R A+ ++ ++ I D+E G Y FSDG+G+IS LA+IV T
Sbjct: 303 CFSTTR-AISGCTAHVKKIDDIE----GNGYIFSDGVGRISKFLAQIVKSELKIKTPTKE 357
Query: 249 -PSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSESTSLDILANSKYQPCFLNRQL 306
PSA+Q R G KG++ V P + + + +RKS K+ + S L+I+ S++ LNRQL
Sbjct: 358 PPSAYQFRLVGCKGMLIVFPQARPQEVHIRKSQFKFAALSQGLEIIRWSQFTVASLNRQL 417
Query: 307 ITLLSTLGIRDHVFEKKQREGVAQLD-AILTDPLKAH------------EALELMSSGEN 353
I +LSTLGI D VF K + + LD A+ +DP AH + L +GE
Sbjct: 418 ILVLSTLGITDKVFHLKLKTMLRNLDEAMESDPKAAHLLRKYVDPNQVTLTIYLPKNGEK 477
Query: 354 TNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELR 389
+++ + + P + P + +++ A L L+
Sbjct: 478 YEIIEGICILARNPSLHPGGIRVVRAVNAPGLHHLK 513
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 55/87 (63%)
Query: 443 VVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDV 502
++EG ++A+NP LHPG +RV+RAV+ P LHH+ D VV P G R + CSGSDLDGD
Sbjct: 480 IIEGICILARNPSLHPGGIRVVRAVNAPGLHHLKDIVVLPRTGDRDIASMCSGSDLDGDD 539
Query: 503 YFVCWDHELIPPLQFPPMDYTPAPEKV 529
+ V WD +L+P F P ++
Sbjct: 540 FLVIWDQDLLPDDWFRSFQLRQLPTRI 566
>gi|452002294|gb|EMD94752.1| hypothetical protein COCHEDRAFT_1201293 [Cochliobolus heterostrophus
C5]
Length = 1666
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 105/382 (27%), Positives = 170/382 (44%), Gaps = 52/382 (13%)
Query: 187 RLGQSFGSSREALHVDSS-DIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFT 245
R +S G + D++ D P V DDG C +G + ++ ++ K G T
Sbjct: 956 RDSRSKGDQEDTRFNDTTLDWPPFPARTVMDDG---CCVMSVG-AAKKIWDLYTKATGVT 1011
Query: 246 IYTPSAFQIRYGGYKGVVAVDPTSSTK--------LSLRKSMLKYKSES------TSLDI 291
PSAFQ R GG KG+ ++ TK + + S K++ + + ++
Sbjct: 1012 DPLPSAFQGRIGGAKGIWVINAERFTKEPTHLEPWIMINDSQWKFEPPNDQSPYHRTFEV 1071
Query: 292 LA-NSKYQPCFLNRQLITLLSTLG-----IRDHVFEKKQREGVAQLDAILTDPLKAHEAL 345
L +S P L+ I +L+ G I D +F+ ++E + L+ +L D K HE +
Sbjct: 1072 LNYSSTPSPSELHSLFIPILADRGVPKEAISDLMFDSLEKERMNLLN-VLQDTTKVHEWV 1130
Query: 346 ELMSSGENTNVLKE-----------------LLMCGYKPDVEPFLLMMLQTFRASNLLEL 388
+G NT + +E LL G+ P P+L L++F S +
Sbjct: 1131 --YRNGANTKLREETPGRAGQPASLEEKVLNLLESGFDPLKFPYLAQNLESFILSRQIFQ 1188
Query: 389 RTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKV 448
+ R+ + + G D G L G++ V S FLD + N R EL + V
Sbjct: 1189 EAKLRVLLPKSTFLYGVADPKGVLNPGEIQVLFSWP----FLDETTNERYLELRDL--NV 1242
Query: 449 VVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWD 508
+VA++P D++ +R V P L H+VD VF +KG P + G D DGD++++CW+
Sbjct: 1243 LVARHPACRRSDIQKVRTVIHPELSHLVDVAVFSSKGSFPLAGKLQGGDYDGDIFWICWE 1302
Query: 509 HELIPPLQFPPMDYTPAPEKVL 530
+ L+ P P P PE L
Sbjct: 1303 NTLVQPFFNAPAPVQP-PEPSL 1323
>gi|451845380|gb|EMD58693.1| hypothetical protein COCSADRAFT_194603 [Cochliobolus sativus
ND90Pr]
Length = 1215
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 95/348 (27%), Positives = 153/348 (43%), Gaps = 50/348 (14%)
Query: 205 DIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVA 264
D PD V DDG C +G + ++ ++ K G T PSAFQ R GG KG+
Sbjct: 524 DWPPFPDGTVMDDG---CCVMSVG-AAKKIWDLYTKATGVTDPLPSAFQGRIGGAKGIWV 579
Query: 265 VDPTSSTK--------LSLRKSMLKYK---SESTSLDILANSKYQ----PCFLNRQLITL 309
+ TK + + +S K++ +S S Y P L+ I +
Sbjct: 580 ISAEKFTKDTDHLEPWIEINESQWKFQPPNDQSPYHRTFEVSNYSSTPSPSELHSSFIPI 639
Query: 310 LSTLG-----IRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKE----- 359
L+ G I D + + ++E + L+ +L D K HE + +G NT + +E
Sbjct: 640 LADRGVTKEAISDLMLDSLEKERINLLN-VLQDATKVHEWV--YRNGANTKLREETHGRV 696
Query: 360 ------------LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLD 407
LL G+ P P+L L++F S + + R+ + + G D
Sbjct: 697 GQPASLKEKALNLLESGFDPLKFPYLAQNLESFIMSRQIFQEAKLRVLLPKSTFLYGVAD 756
Query: 408 ETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAV 467
G L G++ + S F+D + N R +L +E V+VA+ P D++ +R V
Sbjct: 757 PLGVLNPGEIQILFSWP----FVDETTNERYSDLRDLE--VLVARQPACRRSDIQKVRTV 810
Query: 468 DVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPL 515
P L H+VD VF +KG P + G D DGD++++CW+ L+ P
Sbjct: 811 IHPELSHLVDVAVFSSKGPFPLAGKLQGGDYDGDIFWICWEDTLVQPF 858
>gi|224148789|ref|XP_002336714.1| hypothetical protein POPTRDRAFT_593566 [Populus trichocarpa]
gi|222836572|gb|EEE74979.1| hypothetical protein POPTRDRAFT_593566 [Populus trichocarpa]
Length = 196
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 92/159 (57%), Gaps = 2/159 (1%)
Query: 555 ICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQD 614
I +HVVHADL A +CL LA+L+ +VDF KTG ++PS L+ +IYPDFM K++
Sbjct: 25 IPKSHVVHADLSEYGALDEKCLTLAELAATSVDFPKTGKIVSMPSDLKPKIYPDFMGKEE 84
Query: 615 KTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQS--YDTDMEVDGFEDYITDAFKY 672
Y+S++++G+LYR +KD S YD D+EV G D+I+DA+
Sbjct: 85 HQSYKSKKILGRLYRQIKDAYDDDDVAASSELNFVRGDIPYDLDLEVPGVTDFISDAWDQ 144
Query: 673 KTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKR 711
K YD +L L+ Y +K E E+++ + M K +K+
Sbjct: 145 KCSYDGQLNGLLAQYKVKREEEVVTWHVWSMPKGSSRKQ 183
>gi|242051713|ref|XP_002455002.1| hypothetical protein SORBIDRAFT_03g002800 [Sorghum bicolor]
gi|241926977|gb|EES00122.1| hypothetical protein SORBIDRAFT_03g002800 [Sorghum bicolor]
Length = 1127
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 141/531 (26%), Positives = 222/531 (41%), Gaps = 103/531 (19%)
Query: 175 FRDIKN---VAKYAARLGQSFGSSREALHVDSS--DIEIIPDVEVED--------DGITY 221
F I N VAKY +R + + L VD S +++II D + DG
Sbjct: 476 FMHINNAPTVAKYLSRFALILSKTIK-LDVDFSKVNVKIIDDEPCREESGEIAVQDGKDL 534
Query: 222 CFSDGIGKISAELAEIVAKNCGFTIYT--------------------PSAFQIR--YGGY 259
+DG G IS +LA +NC +I+ P Q R + GY
Sbjct: 535 IHTDGTGLISVDLA----RNCPSSIFKGNFLKDAVDSKGHQHLTTKHPLLIQFRMFHNGY 590
Query: 260 --KGVVAVDPT-SSTKLSLRKSMLKYKSESTS--------LDILANSKYQP--CFLNRQL 306
KG + D + + +R SM+K + S L+++ S Y+P F +R L
Sbjct: 591 AVKGTLLADKRLPANTIHIRPSMIKIHGDENSFGEKSFNSLEVITTS-YRPKRAFTSRFL 649
Query: 307 ITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYK 366
I+LL +R+ F R + ++ P + E + + + ++ +++ G +
Sbjct: 650 ISLLHYGRVREEFFLDLLRNALEDVNNARHRPRNSLE-VAFNHADLDDSMSARMILSGIQ 708
Query: 367 PDVEPFL---LMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA 423
P+ E +L L ++ L E RI I + +MG D TGTL+ QV +
Sbjct: 709 PEDEAYLQSQLALMAKVERKGLKE----GRIPIDDTYYLMGTTDPTGTLKRDQVCI---- 760
Query: 424 SRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVD----CV 479
LDN G + GKV+V K+P LH GD+ +L A + L +V +
Sbjct: 761 -----ILDN---------GQLSGKVLVYKHPGLHFGDIHILTATYIDGLEKIVGNSKYAI 806
Query: 480 VFPAKGKRPHTNECSGSDLDGDVYFVCWDHEL--------------IPPLQF---PPMDY 522
FP G R +E + SD DGD+Y+V + +L I P + P DY
Sbjct: 807 FFPTCGPRSLADEMANSDFDGDLYWVSRNPQLLEGFTKQRKPWVRRIQPTKTELKKPQDY 866
Query: 523 T-PAPEKVLARD-MTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAK 580
T P E +L + + Y N L ++ +A + L+L
Sbjct: 867 TGPKLESLLFHEFLRARFTPSYVLGAASNCWLALMDRLLTGGVPKSERQAIKKKMLDLVD 926
Query: 581 LSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAV 631
+ +A+D K G T+P L+V+ YP FME+ +K Y S V+GK+Y V
Sbjct: 927 IYYLALDAPKEGNKITVPGELKVKKYPHFMERDEKKSYTSTSVLGKIYDEV 977
>gi|297738765|emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 112 bits (280), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 188/813 (23%), Positives = 334/813 (41%), Gaps = 155/813 (19%)
Query: 58 VTPSKVY-FSGPEISLS-NRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEE 115
V+P Y F GP ++ + + R DE N L + F ++ D+ S L ST+
Sbjct: 181 VSPDGSYRFKGPYLNKTRTHLQRVLGDE--NILLVKFAEDVTDR------SSLNCSTDS- 231
Query: 116 RHTTIYERVLSTLRNGIVIGDKKFETLAFS---------NSQVKDNSMWMFASRPELTAA 166
Y ++ R GI +G +++ F N ++F L+
Sbjct: 232 --NASYNKIA---REGIFVGLRQYRFFVFKDGGKEEKKKNPTSSVKCYFVFMESSALSGK 286
Query: 167 DIRESMGDFRD---IKNVAKYAARLGQSFGSSREALHVDSSDIEI--IPD---------V 212
+ E+ F + +VAKY AR + + L VD S + I I D V
Sbjct: 287 TVHEARCIFMHAHMVSSVAKYMARFSLILSKTVK-LDVDLSTVNIQRIDDEPGRDEDGHV 345
Query: 213 EVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYT------PSAFQIRY----GGYKGV 262
++D +DG G IS +LA N Y P Q R KG
Sbjct: 346 VYDEDWKPLILTDGTGFISEDLALRCPNNLCRGKYMNNGNSDPLLIQCRLFNNGCAVKGT 405
Query: 263 VAVDPTSSTK-LSLRKSMLKYKSES--------TSLDILANSKYQP--CFLNRQLITLLS 311
+ ++ + + +R SM+K +++ S++I S QP +L++ LI LLS
Sbjct: 406 LLLNRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEINGTSN-QPRRSYLSKYLIALLS 464
Query: 312 TLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEP 371
G+ + F ++ + ++ + +A + L + +++ +++ G D EP
Sbjct: 465 YGGVPNEYFMNLLKDALEDAPSVQSSK-RAALRVSLRFGEMDDSIVTRMILSGIPID-EP 522
Query: 372 FLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLD 431
FL L LR ++ + + +MG D TGTL+S +V + LD
Sbjct: 523 FLHHCLSFMVNEERKGLRV-GKLPVNDCFYLMGTADPTGTLKSDEVCI---------ILD 572
Query: 432 NSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVD----CVVFPAKGKR 487
+ G V+G+V+V K+P LH GD+ VL A V +L V + FP KG R
Sbjct: 573 H---------GQVQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPR 623
Query: 488 PHTNECSGSDLDGDVYFVCWDHELI-------PPLQFPPMDYTPAPEKVLARDMTIEDVE 540
+E + SD DGD+Y+V + +L+ P ++ + P+ D + +++E
Sbjct: 624 SLADEMANSDFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPT---DFSPDELE 680
Query: 541 -EYFADYI-----VNDSLGVICNAHVVHAD----LEPDKARSNQC-----LELAKLSTIA 585
E F ++ + ++G+ + +V D L D + +C LEL + A
Sbjct: 681 HELFQLFLTTRFQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDA 740
Query: 586 VDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFT 645
+D K+G+ + L+ E +P FM ++ + Y S ++G++Y AV+ P + K
Sbjct: 741 LDAPKSGMKVNVSKELKAEKFPHFMGRE--SSYHSTSILGQIYDAVESFQPENQSTKEIW 798
Query: 646 KEVAMQSYDTDMEVDGFEDYITDAF-KYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMA 704
+ + ++ D D + +Y++E L +G +T+ E + I +
Sbjct: 799 R---LPLFNIDAVPQACLRSWKDRYDQYRSEMAAAL-----QHGGETKDEYAAEVINKYK 850
Query: 705 KSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRY 764
+ I++ + ES + ED++ +A A YHV Y G
Sbjct: 851 Q----------ILYGAAEFE-----------ESPRNLEDIFDEALAIYHVTYEFVING-- 887
Query: 765 KEEGMNRTHFLSFPWCIHD----KLIEIKRGKQ 793
R + +FPW + KL +K G++
Sbjct: 888 -----ARVSYCNFPWRVAGRALCKLYTVKLGEK 915
>gi|402579794|gb|EJW73745.1| hypothetical protein WUBG_15348 [Wuchereria bancrofti]
Length = 203
Score = 112 bits (279), Expect = 9e-22, Method: Composition-based stats.
Identities = 66/170 (38%), Positives = 96/170 (56%), Gaps = 9/170 (5%)
Query: 328 VAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLE 387
+ QL +L + K E L + NV + L G+ EPF +L+ L +
Sbjct: 32 LTQLADMLMNEDKCRERLNELPL--RVNVSRLTLARGFALTQEPFFRSLLRAHIKCTLKK 89
Query: 388 LRTRTRIFI--QNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVE 445
L + +I I GR+M G +DETG L+ GQ+FVQC+ R +L ++S +++
Sbjct: 90 LIAKIQIQIPPHLGRSMFGVMDETGQLQWGQIFVQCT---RNIWLKTP--SQSAAKIILK 144
Query: 446 GKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSG 495
GKV++ KNPC+ GD+RV AVD+P LHH+VD VVFP G RPH +E +G
Sbjct: 145 GKVMLTKNPCIVAGDVRVFEAVDIPELHHLVDVVVFPQHGPRPHPDEMAG 194
>gi|105990550|gb|ABF81697.1| truncated MOP1 [Zea mays]
Length = 310
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 99/171 (57%), Gaps = 4/171 (2%)
Query: 1 MEYIEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTP 60
++ + E + L+ CYEP++++ + + ++ L++ + L+ ++ +TP
Sbjct: 141 IDTLRRIFEKMSKLKSTCYEPLQFIRHEAHSMNMRKKALSNKRES--GKLMRCYRIHITP 198
Query: 61 SKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST--NEERHT 118
SK+Y GPE +SN VV+ + + +F R++FVDED KL LS ++ T
Sbjct: 199 SKIYCLGPEEEVSNYVVKYHSEYASDFARVTFVDEDWSKLSPNALSARTEQGFFSKPLKT 258
Query: 119 TIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIR 169
+Y R+LS L+ G IG KK+E LAFS SQ++ NS+WMFAS LTA +IR
Sbjct: 259 GLYHRILSILKEGFCIGPKKYEFLAFSASQLRGNSVWMFASNSSLTAENIR 309
>gi|221481781|gb|EEE20151.1| RNA-dependent RNA polymerase, putative [Toxoplasma gondii GT1]
Length = 1186
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 147/526 (27%), Positives = 223/526 (42%), Gaps = 130/526 (24%)
Query: 46 LDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFL--RLSFVDEDLDKLYST 103
L G I V ++LVTP KV G L +R+ R Y +E+ L RL+FV+ED + S+
Sbjct: 296 LRQGGIPVLQILVTPLKVLLKGVYSELGSRLTRQYANEVAAGLLVRLAFVEEDGKAMSSS 355
Query: 104 VL----SPLISSTNEERHTTIYERVL---STLRNGIVIGDKKFETLAFSNS----QVKDN 152
+ +PL E I R+ S++ G++ K + FS++ V+D
Sbjct: 356 LHRAQDAPLEDRNKELSAEAILSRLGVFNSSISPGVLT---KRLGICFSSTLPTIDVRDE 412
Query: 153 SMWMFASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDV 212
M + P++T++ + +M + R G+ E + S I++ P+
Sbjct: 413 EMLLV---PDVTSSAVTAAMS--------GEAQRRKGE------EERRISSRGIKLDPN- 454
Query: 213 EVEDDGITYCFSDGIGKISAEL-AEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSST 271
+ F+DG G IS +L IVA C + T SAFQIR GG KG++ + P
Sbjct: 455 -----SPEFIFTDGSGAISLDLWRRIVA--CLPALRTSSAFQIRLGGIKGMLLLHPAFPL 507
Query: 272 K---------LSLRKSMLKYKSES----------------------------TSLDILAN 294
L + +SM K+ S S L+I
Sbjct: 508 PRPPAPRLKHLLISQSMYKFHSRSRIRKSAESNPGKAKLAWRFSGMASVSFLQCLEINDF 567
Query: 295 SKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKA-HEALELMSSGEN 353
S+ P FLNRQ+I LL TLG+ VF++ QR + L I T K EA L +S
Sbjct: 568 SRRLPYFLNRQVILLLDTLGVEFSVFDRLQRRMLHFLRDIDTRGRKPRREAESLGTSRFA 627
Query: 354 TNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTL- 412
L+ + + G P EPFL L+ R S +LR +TRIF++ G + G D T +L
Sbjct: 628 QTCLEFVSVHGVSPK-EPFLRACLEAMRNSLADDLRKKTRIFVEKGANLFGVPDFTHSLA 686
Query: 413 --------ESGQVF--------------VQCSASRRREFLDN------------------ 432
SG+++ V S RR + +
Sbjct: 687 YDHGWRSSPSGRLYAGLPEVCVHVTKSPVSDSEIPRRTAIASRHGSLSPEADAEAERPKR 746
Query: 433 ---SCNNRSGELG--VVEGKVVVAKNPCLHPGDMRVLRAV---DVP 470
SC + S G +++G V V +NPCL PGD+++ AV D+P
Sbjct: 747 RLISCGSHSLGAGAELIQGVVAVCRNPCLLPGDIQLCFAVGYDDLP 792
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 468 DVPSLHHMVDCVVFPAKGK----RPHTNECSGSDLDGDVYFVCWDHELIPPL 515
D PSLH V A+ + R N SG DLDGD ++V WD +L+ PL
Sbjct: 870 DFPSLHARHPAVSCEARSRMFVFRDMPNMLSGGDLDGDKFWVVWDPDLLAPL 921
>gi|169598368|ref|XP_001792607.1| hypothetical protein SNOG_01986 [Phaeosphaeria nodorum SN15]
gi|111069078|gb|EAT90198.1| hypothetical protein SNOG_01986 [Phaeosphaeria nodorum SN15]
Length = 1428
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 105/401 (26%), Positives = 160/401 (39%), Gaps = 72/401 (17%)
Query: 179 KNVAKYAARLGQSFGSSREALHVDSSDIEIIPDV---------EVEDDGI--------TY 221
+N K ARL + L S I +PD E D + T
Sbjct: 684 QNFCKAFARLDLGLSRTIPTLSFKPSQIRRMPDTYADRTPEAQEFNDATLDWTEQYDRTP 743
Query: 222 CFSDGIGKISAELAEIVAKNC----GFTIYTPSAFQIRYGGYKGVVAVDPTSSTK----- 272
+DG ++S A ++ K C G PS Q R GG KG+ + T+
Sbjct: 744 VMNDGCARVSVGAALLIWKFCQDATGSDEPLPSTLQGRIGGAKGMWMISAEPHTRDPAHL 803
Query: 273 ---LSLRKSMLKYK--SESTSLDILANSK------YQPCFLNRQ------LITLLSTLGI 315
+ + S LK++ E + D NS + F+N I +L G+
Sbjct: 804 DIWIEVTDSQLKFEPAQEDQADDRPYNSHRLTFNYIKHSFVNGSSDLHISFIPILVDRGV 863
Query: 316 RDHVFEK----KQREGVAQLDAILTDPLKAHEALELMSSGENTNVL-------------- 357
+ K + + QL +L DP++ H + G T L
Sbjct: 864 QKSTIAKLMISRLDDERKQLLEMLDDPVRLHNWV--TKQGSATPALGILPWQAALPLTLP 921
Query: 358 ---KELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLES 414
K LL G++P PFL L+ F L + + R + ++G D G L+
Sbjct: 922 EKAKLLLRTGFQPYQSPFLARTLKRFVQQRQLWMEEKLRAPLGRATYLIGLADPLGILKP 981
Query: 415 GQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHH 474
G+V VQ S E+ N+ N +GE +VV+ + P DM+ +RAV P L H
Sbjct: 982 GEVHVQFSKPFLDEYGRNTYRNLAGE------EVVITRQPACRRSDMQKMRAVSHPQLSH 1035
Query: 475 MVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPL 515
+VD VVF ++G P + G D DGD ++VCW+ +L+ P
Sbjct: 1036 LVDVVVFSSRGIYPAAGKLQGGDYDGDTFWVCWEPDLVVPF 1076
>gi|308161550|gb|EFO63991.1| RNA-directed RNA polymerase, putative [Giardia lamblia P15]
Length = 1999
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 111/487 (22%), Positives = 200/487 (41%), Gaps = 116/487 (23%)
Query: 172 MGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKIS 231
+GD +++ K R G FG S + V ++++ D + + Y F+DG G+IS
Sbjct: 430 LGDINEVQ-ACKICTRRGLCFGKSLPTIKVREEHVQVVADRQYNN----YVFTDGAGEIS 484
Query: 232 AELAEIVA-----------------------------------------KNCGFTIYTPS 250
+L +A K I PS
Sbjct: 485 YDLMLEIALCLNKLKVEQLNKNTETHYLDEFADTSEDTEQNMSHLQPNLKTISNLIQVPS 544
Query: 251 AFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYK-----SESTSLDILANSKYQPCFLNR 304
A Q+R+ G KGV+ ++ K + L S +K+ +++IL ++ +N
Sbjct: 545 AVQMRWAGAKGVLILNALLPPKTILLHNSQIKFSIPNPTETQQTIEILRVAQPSKGMINM 604
Query: 305 QLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLK-------AHEALELMSSGENTNVL 357
Q+I LLS +G+ D VF + + Q + +P+ ++ + S + ++
Sbjct: 605 QIIVLLSEMGVPDDVFLNLVYQDL-QKALLFLEPIDRCRYQADLYQLVSRTSHSPSGKII 663
Query: 358 KELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQV 417
++LM G +EP L +L + L ++ R + + R +G D L+ G+V
Sbjct: 664 LQMLMAGVD-IIEPCLQFILMKLQLMQLRSMKANMRFSVPDSRIFVGIYDCFDLLKEGEV 722
Query: 418 FV---------QCSASRRREFLDNSCNNRSG---------------ELGVVEGKVVVAKN 453
++ + +A+ + + N S ++ VEG+V+VAKN
Sbjct: 723 YIGLQEPLSISKWTATTHLKAIFNDTQRESLLPPDLNLHISDVVGLDISCVEGRVIVAKN 782
Query: 454 PCLHPGDMRVLRAVDV-----------------PS---------LHHMVDCVVFPAKGK- 486
PC + GD+R+ +AV++ PS ++ V C FP +
Sbjct: 783 PCFYRGDVRIYQAVNIFERLKQETSRQKLKAVLPSFVTREAIRGMYRGVIC--FPKYYEG 840
Query: 487 RPHTNECSGSDLDGDVYFVCWDHELIPPLQ--FPPMDYTPAPEKVLARDMTIEDVEEYFA 544
RP T+ SGSDLDGD+Y+V WD L+ +Q + P + P ++ ++D+E
Sbjct: 841 RPMTDCLSGSDLDGDIYWVSWDASLLGTIQREYEPASFQARPGEIDICTPDLKDIEAGLG 900
Query: 545 DYIVNDS 551
+ + DS
Sbjct: 901 NLLRIDS 907
>gi|402468935|gb|EJW04011.1| hypothetical protein EDEG_01705 [Edhazardia aedis USNM 41457]
Length = 1964
Score = 108 bits (271), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 109/217 (50%), Gaps = 45/217 (20%)
Query: 152 NSMWMFASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPD 211
N M ++ + + A IR+ +G F IKN+ KYA RLGQ+ S+ + +D+
Sbjct: 1246 NGMEQYSKQILVGADYIRQWLGTFSTIKNIGKYAIRLGQALSSTIGTIEIDNL------- 1298
Query: 212 VEVEDDGIT-YCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVA------ 264
V ++D YCF+DGIG+I A+ V + C I PSAFQIR GGYKGVV+
Sbjct: 1299 VCIDDKFFNGYCFTDGIGRIDYSTAKKVCE-CLGIINIPSAFQIRIGGYKGVVSLYKLKN 1357
Query: 265 ------------------------VDPTS------STKLSLRKSMLKYKSESTSLDILAN 294
+D S S L +R SM K++S +L+++A
Sbjct: 1358 NNEEKKLKNIIYSSNTNTNLNSTNIDTNSNISLVQSNSLYVRNSMKKFESTHRTLEVVAF 1417
Query: 295 SKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQL 331
S+ PC+LNRQ+I +L LGI D++ + Q + ++
Sbjct: 1418 SQNIPCYLNRQIILILCALGINDNIIIEMQDNYIEKI 1454
>gi|170579664|ref|XP_001894930.1| RNA-directed RNA polymerase 1 [Brugia malayi]
gi|158598304|gb|EDP36223.1| RNA-directed RNA polymerase 1, putative [Brugia malayi]
Length = 312
Score = 108 bits (271), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 117/227 (51%), Gaps = 26/227 (11%)
Query: 48 DGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKL-YSTVLS 106
+G V KV++TP+++ PE+ + NRV+R++ + + LR+ F D+D L +TV
Sbjct: 72 EGYQRVRKVIITPTRIILVVPELLMGNRVLRTFDKDGNGALRIQFRDDDGTPLRVNTVGL 131
Query: 107 PLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAA 166
LI +T +TL GI IGD+ F L SNSQ++DN + + A
Sbjct: 132 FLIQTT-----------TFNTLSRGIYIGDRHFVYLGSSNSQMRDNGCYFYDDGKGGQAH 180
Query: 167 DIRESMGDFRDIKNVAKYAARLGQSFGSSREALHV-----DSSDIEIIPDVEVEDDGITY 221
IRE +G F D N+ K +R+GQ F ++ + + +II + +Y
Sbjct: 181 KIREQLGKF-DSCNIPKMMSRMGQCFTQAKRCKVILKRQKYNKTYDIIGGRDTNQ--ASY 237
Query: 222 CFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT 268
FSDG+GK+S E AE +A + G IR+ G KGV+++DP+
Sbjct: 238 IFSDGVGKVSKEFAEKIAFDIGL------GTSIRHRGIKGVLSIDPS 278
>gi|225445110|ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 108 bits (271), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 171/746 (22%), Positives = 303/746 (40%), Gaps = 145/746 (19%)
Query: 129 RNGIVIGDKKFETLAFS---------NSQVKDNSMWMFASRPELTAADIRESMGDFRD-- 177
R GI +G +++ F N ++F L+ + E+ F
Sbjct: 248 REGIFVGLRQYRFFVFKDGGKEEKKKNPTSSVKCYFVFMESSALSGKTVHEARCIFMHAH 307
Query: 178 -IKNVAKYAARLGQSFGSSREALHVDSSDIEI--IPD---------VEVEDDGITYCFSD 225
+ +VAKY AR S L VD S + I I D V ++D +D
Sbjct: 308 MVSSVAKYMARFSLIL-SKTVKLDVDLSTVNIQRIDDEPGRDEDGHVVYDEDWKPLILTD 366
Query: 226 GIGKISAELAEIVAKNCGFTIYT------------PSAFQIRY----GGYKGVVAVDPTS 269
G G IS +LA N Y P Q R KG + ++
Sbjct: 367 GTGFISEDLALRCPNNLCRGKYMNNGNSDVCDSRYPLLIQCRLFNNGCAVKGTLLLNRKL 426
Query: 270 STK-LSLRKSMLKYKSES--------TSLDILANSKYQP--CFLNRQLITLLSTLGIRDH 318
+ + +R SM+K +++ S++I S QP +L++ LI LLS G+ +
Sbjct: 427 PPRTIQIRPSMIKVETDPKLSDTQTVNSVEINGTSN-QPRRSYLSKYLIALLSYGGVPNE 485
Query: 319 VFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQ 378
F ++ + ++ + +A + L + +++ +++ G D EPFL L
Sbjct: 486 YFMNLLKDALEDAPSVQSSK-RAALRVSLRFGEMDDSIVTRMILSGIPID-EPFLHHCLS 543
Query: 379 TFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRS 438
LR ++ + + +MG D TGTL+S +V + LD+
Sbjct: 544 FMVNEERKGLRV-GKLPVNDCFYLMGTADPTGTLKSDEVCI---------ILDH------ 587
Query: 439 GELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVD----CVVFPAKGKRPHTNECS 494
G V+G+V+V K+P LH GD+ VL A V +L V + FP KG R +E +
Sbjct: 588 ---GQVQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMA 644
Query: 495 GSDLDGDVYFVCWDHELI-------PPLQFPPMDYTPAPEKVLARDMTIEDVE-EYFADY 546
SD DGD+Y+V + +L+ P ++ + P+ D + +++E E F +
Sbjct: 645 NSDFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPT---DFSPDELEHELFQLF 701
Query: 547 I-----VNDSLGVICNAHVVHAD----LEPDKARSNQC-----LELAKLSTIAVDFSKTG 592
+ + ++G+ + +V D L D + +C LEL + A+D K+G
Sbjct: 702 LTTRFQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSG 761
Query: 593 VAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQS 652
+ + L+ E +P FM ++ + Y S ++G++Y AV+ P + K + +
Sbjct: 762 MKVNVSKELKAEKFPHFMGRE--SSYHSTSILGQIYDAVESFQPENQSTKEIWR---LPL 816
Query: 653 YDTDMEVDGFEDYITDAF-KYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKR 711
++ D D + +Y++E L +G +T+ E + I + +
Sbjct: 817 FNIDAVPQACLRSWKDRYDQYRSEMAAALQ-----HGGETKDEYAAEVINKYKQ------ 865
Query: 712 DLEAIIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNR 771
I++ + ES + ED++ +A A YHV Y G R
Sbjct: 866 ----ILYGAAEFE-----------ESPRNLEDIFDEALAIYHVTYEFVING-------AR 903
Query: 772 THFLSFPWCIHD----KLIEIKRGKQ 793
+ +FPW + KL +K G++
Sbjct: 904 VSYCNFPWRVAGRALCKLYTVKLGEK 929
>gi|361130100|gb|EHL01954.1| putative RNA-dependent RNA polymerase 2 [Glarea lozoyensis 74030]
Length = 263
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 106/200 (53%), Gaps = 22/200 (11%)
Query: 319 VFEKKQR--EGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMM 376
VF+ + R +GV LD + K A ++ + +++L+ G++ V+P L +
Sbjct: 53 VFQIRYRGYKGVLMLDPGME---KQTSAFRFLTYTNKPELAEKVLIDGFE-TVQPTLTKL 108
Query: 377 LQTFRASNLLELR--TRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSC 434
+ + ++ R R RI I R + G D G L+ G+ V+ +
Sbjct: 109 VNS-EYDRMINKRDEQRCRILIPKSRLLFGICDAWGVLKEGECAVKVTM----------- 156
Query: 435 NNRSGELGVVEG-KVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNEC 493
+ G+ ++G V+V +NPCLHPGD++ +AV+ L H+VDC+VFP +G RP +
Sbjct: 157 -DGDGQPYTLKGMDVLVTRNPCLHPGDLQKFKAVERDELAHLVDCIVFPTRGARPAADLM 215
Query: 494 SGSDLDGDVYFVCWDHELIP 513
SG DLDGD +FVCWD +LIP
Sbjct: 216 SGGDLDGDTFFVCWDSDLIP 235
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 62/117 (52%), Gaps = 22/117 (18%)
Query: 199 LHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAK--NCGF--TIYTPSAFQI 254
+ ++ S + IPD+E +D Y F+DG G IS LA +++ F T YTPS FQI
Sbjct: 1 MTLNPSRCQDIPDIEAQD----YVFTDGCGLISKHLARELSRVLRVAFRNTRYTPSVFQI 56
Query: 255 RYGGYKGVVAVDP------------TSSTKLSLRKSML--KYKSESTSLDILANSKY 297
RY GYKGV+ +DP T + K L + +L +++ +L L NS+Y
Sbjct: 57 RYRGYKGVLMLDPGMEKQTSAFRFLTYTNKPELAEKVLIDGFETVQPTLTKLVNSEY 113
>gi|237843439|ref|XP_002371017.1| RNA dependent RNA polymerase domain-containing protein [Toxoplasma
gondii ME49]
gi|211968681|gb|EEB03877.1| RNA dependent RNA polymerase domain-containing protein [Toxoplasma
gondii ME49]
gi|221502280|gb|EEE28013.1| RNA-dependent RNA polymerase, putative [Toxoplasma gondii VEG]
Length = 1186
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 142/527 (26%), Positives = 217/527 (41%), Gaps = 132/527 (25%)
Query: 46 LDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFL--RLSFVDEDLDKLYST 103
L G I V ++LVTP KV G L +R+ R Y +E+ L RL+FV+ED + S+
Sbjct: 296 LRQGGIPVLQILVTPLKVLLKGVYSELGSRLTRQYANEVAAGLLVRLAFVEEDGKAMSSS 355
Query: 104 VL----SPLISSTNEERHTTIYERVL---STLRNGIVIGDKKFETLAFSNS----QVKDN 152
+ +PL E I R+ S++ G++ K + FS++ V+D
Sbjct: 356 LHRAQDAPLEDRNKELSAEAILSRMGVFNSSISPGVLT---KRLGICFSSTLPTIDVRDE 412
Query: 153 SMWMFASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDV 212
M + P++T++ + +M + R G E + S I++ P+
Sbjct: 413 EMLLV---PDVTSSAVTAAMS--------GEAQRRKGD------EERRISSRAIKLDPN- 454
Query: 213 EVEDDGITYCFSDGIGKISAEL-AEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSST 271
+ F+DG G IS +L IVA C + T SAFQIR GG KG++ + P
Sbjct: 455 -----SPEFIFTDGSGAISLDLWRRIVA--CLPALRTSSAFQIRLGGIKGMLLLHPAFPL 507
Query: 272 K---------LSLRKSMLKYKSES----------------------------TSLDILAN 294
L + +SM K+ S S L+I
Sbjct: 508 PRPPAPRLKHLLISQSMYKFHSRSRIRKSAEANPGKAKLAWRFSDMASVSLLQCLEINDF 567
Query: 295 SKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENT 354
S+ P FLNRQ+I LL TLG+ VF++ QR + L I T K E + +
Sbjct: 568 SRRLPYFLNRQVILLLDTLGVEFSVFDRLQRRMLHFLRDIDTRGRKPRRDAESLGTSRFA 627
Query: 355 NVLKELL-MCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTL- 412
E + + G P EPFL L+ R S +LR + RIF++ G + G D T +L
Sbjct: 628 QTCLEFVSVHGVSPK-EPFLRACLEAMRNSLADDLRKKARIFVEKGANLFGVPDFTHSLA 686
Query: 413 --------ESGQVF------------------------------------VQCSASRRRE 428
SG+++ A R +
Sbjct: 687 YDHGWRSSPSGRLYAGLPEVCVHVTKSPVSDSEIPRRTAIASRHGSLSPEADAEAERPKR 746
Query: 429 FLDNSCNNRSGELG--VVEGKVVVAKNPCLHPGDMRVLRAV---DVP 470
L +SC + S G +++G V V +NPCL PGD+++ AV D+P
Sbjct: 747 RL-SSCGSHSLGAGAELIQGVVAVCRNPCLLPGDIQLCFAVGYDDLP 792
Score = 40.0 bits (92), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 468 DVPSLHHMVDCVVFPAKGK----RPHTNECSGSDLDGDVYFVCWDHELIPPL 515
D P+LH V A+ + R N SG DLDGD ++V WD +L+ PL
Sbjct: 870 DFPTLHARHPAVSCEARSRMFVFRDMPNMLSGGDLDGDKFWVVWDPDLLAPL 921
>gi|330915603|ref|XP_003297095.1| hypothetical protein PTT_07392 [Pyrenophora teres f. teres 0-1]
gi|311330417|gb|EFQ94809.1| hypothetical protein PTT_07392 [Pyrenophora teres f. teres 0-1]
Length = 1415
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 99/365 (27%), Positives = 160/365 (43%), Gaps = 48/365 (13%)
Query: 209 IPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT 268
PD V DDG + S G I + + K G T PS FQ R G KGV +
Sbjct: 733 FPDGAVMDDGCS-IISVGAALI---IWHLYRKATGTTGPLPSIFQGRIAGAKGVWMISAE 788
Query: 269 SSTK--------LSLRKSMLKYKS-ESTSLDI-------LAN--SKYQPCFLNRQLITLL 310
S TK + + S K+ E LD L+N S P L+ I +L
Sbjct: 789 SYTKDPDHLKPWIMINASQWKFNPPEDAMLDHEHHRTFELSNYSSSPTPSELHISFIPIL 848
Query: 311 STLGIRDHVFEKKQREGV----AQLDAILTDPLKAHEALELMSSGENTN----------- 355
+ V + ++ + +L +L DP+K ++ + + T
Sbjct: 849 VDRKVPMTVIDSLMKDSLEVERTKLLDLLPDPVKIYDWVHRNGTKTQTGNDVPWQAAMPV 908
Query: 356 ----VLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGT 411
+K LL G+ P L LQ F + + ++ R+ + + G +D G
Sbjct: 909 SLEEKVKLLLESGFSPAKFSPLAQSLQRFIQAKQILQESKLRVPLAKSTFLFGIVDPLGV 968
Query: 412 LESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS 471
LE G++ VQ S+S F D++ + + L + + +V+VA+ P D++ +R V
Sbjct: 969 LEPGEIQVQFSSS----FADDTTDEKY--LCLRDMEVLVARQPACRRSDIQKVRTVIRSE 1022
Query: 472 LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP-LQFPPMDYTPAPEKVL 530
L H+VD VVFP+KG+ P + G D DGD++++CW+ +L+ P L P +P P +
Sbjct: 1023 LSHLVDVVVFPSKGRYPLAGKLQGGDYDGDIFWICWEPQLVQPFLNAPAPVQSPEPARYE 1082
Query: 531 ARDMT 535
+ MT
Sbjct: 1083 IKKMT 1087
>gi|189208947|ref|XP_001940806.1| RNA-directed RNA polymerase 2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976899|gb|EDU43525.1| RNA-directed RNA polymerase 2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 1436
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 101/358 (28%), Positives = 157/358 (43%), Gaps = 48/358 (13%)
Query: 209 IPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT 268
PD V DDG + S G I + ++ K G T PS FQ R G KGV +
Sbjct: 751 FPDGTVMDDGCS-IISVGAALI---IWQLYKKATGTTGPLPSIFQGRIAGAKGVWIISAE 806
Query: 269 SSTK--------LSLRKSMLKYKS-ESTSLDI-------LAN--SKYQPCFLNRQLITLL 310
S TK + + S K+ E LD L+N S P L+ I +L
Sbjct: 807 SYTKDPEHLKPWIMINASQWKFNPPEDALLDHEHHRTFELSNYSSSPTPSELHISFIPIL 866
Query: 311 S----TLGIRDHVFEKKQREGVAQLDAILTDPLK----AHEALELMSSGENT-------- 354
L + D + + +L +L DP+K H SG +
Sbjct: 867 VDRKVPLTVIDSLMKDSLEAERTKLLDLLPDPVKMYDWVHRNGTKTQSGNDVPWQAAMPV 926
Query: 355 ---NVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGT 411
+K LL G+ P L LQ F + + ++ R+ + + G +D
Sbjct: 927 SLEEKVKLLLESGFSPAKFQPLAQSLQRFIQAKQILQESKLRVPLAKSTFLFGIVDPFEV 986
Query: 412 LESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS 471
LE GQ+ VQ S+S F D++ + + LG+ + +V+VA+ P D++ +R V P
Sbjct: 987 LEPGQIQVQFSSS----FADDTTDEKY--LGLRDMEVLVARQPACRRSDIQKVRTVIRPE 1040
Query: 472 LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP-LQFPPMDYTPAPEK 528
L H+VD VVFP++G+ P + G D DGD++++CW+ +L+ P L P +P P +
Sbjct: 1041 LSHLVDVVVFPSRGRYPLAGKLQGGDYDGDIFWICWEPQLVLPFLNAPAPVQSPDPAR 1098
>gi|302782930|ref|XP_002973238.1| hypothetical protein SELMODRAFT_413790 [Selaginella moellendorffii]
gi|300158991|gb|EFJ25612.1| hypothetical protein SELMODRAFT_413790 [Selaginella moellendorffii]
Length = 878
Score = 105 bits (262), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 132/490 (26%), Positives = 206/490 (42%), Gaps = 86/490 (17%)
Query: 211 DVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIR--YGG--YKGVVAVD 266
++ V +G +DG G IS +LA+ VA N P+ Q+R Y G KG +
Sbjct: 263 EIAVGCNGKPLIHTDGTGFISEDLAKQVAVNTSEEY--PALLQVRLFYHGIAVKGTLLTL 320
Query: 267 PTSSTK-LSLRKSMLKYKSES--------TSLDILANSKYQP-CFLNRQLITLLSTLGIR 316
T K + R SMLK K++ SL+I S P L+R +I LL G+
Sbjct: 321 KTLQHKTIVYRDSMLKVKADPKLANCPSFNSLEICTTSHKPPVASLSRYVIALLLEGGVP 380
Query: 317 DHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMM 376
+ F + +E +A+ L D AH S G+ + + +++ G P + FL
Sbjct: 381 ESFFIQVVQEAIAKAMTPLQDIAAAHRLCSRFSFGD---MPRRMILAGI-PLTDHFLRNS 436
Query: 377 LQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNN 436
L T + L + + + ++ +MG D T TL QV + L+N +
Sbjct: 437 LMTMIRTQL-KRYAKANVPLEGSYYLMGSADPTNTLARNQVAI---------LLENGPLH 486
Query: 437 RSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVD----CVVFPAKGKRPHTNE 492
R KV+V K+P +HPGD+ V A L + ++FP KG R +E
Sbjct: 487 RH--------KVLVYKHPGMHPGDVHVFEATWNQELESCLGNSKYVIIFPTKGPRSVVHE 538
Query: 493 CSGSDLDGDVYFVCWDHE---LIPPLQFP------------PMDYTPAPEKVLARDMTIE 537
+ SDLDGD+Y++C + + L P Q P P +PE +++R + +
Sbjct: 539 IANSDLDGDLYWICTNEQVSNLYKP-QLPWQEKRTNGTTAVPSCLGMSPEVIMSRLVAM- 596
Query: 538 DVEEYFADYIVNDSLGVICNAHVVHAD---------LEPDKARSNQCLELAKLSTIAVDF 588
A + N ++ ++H D + + R N LELA L +A+D
Sbjct: 597 ---FLRAIFKPNFAISRAATNWLIHMDKYLSTSFDNVREREFRQNCLLELADLYYLALDA 653
Query: 589 SKTGVAATIPSGLRVE-IYPDFME------------KQDKTCYESQRVIGKLYRAVKDIA 635
KTG TI L + I P F+ +Q Y S + GK+Y V ++
Sbjct: 654 DKTGEMVTIEDRLLCDKIKPHFLVEENSNNPNRRKIQQQDNVYRSTSIFGKIYNLVTEVI 713
Query: 636 PPTATIKSFT 645
A K FT
Sbjct: 714 ENEA--KEFT 721
>gi|290988738|ref|XP_002677050.1| predicted protein [Naegleria gruberi]
gi|284090655|gb|EFC44306.1| predicted protein [Naegleria gruberi]
Length = 553
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 123/486 (25%), Positives = 203/486 (41%), Gaps = 125/486 (25%)
Query: 74 NRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIV 133
N+V R Y ID F+R+ F DE R +T V+ T G
Sbjct: 111 NKVFRYYG--IDKFIRVDFEDE--------------------RDST----VMQTTLKGFC 144
Query: 134 IGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFG 193
+ + F+ + S+S + + ++ + DI G + + AR +F
Sbjct: 145 LYGQMFKPIGASSSLLSERGVYFTCEEDPMKMMDI---FGIYAS--EIETKIARQCLNFT 199
Query: 194 SSREALHVDSSDIEIIPDVEVED-DGITYCFSDGIGKISAELAEIVAKNC------GFTI 246
S++E + V +I D+ D GI SDGIG IS A+ V + G +
Sbjct: 200 STKETIRVHK--YIVIDDINSRDGKGIV---SDGIGMISYSFAKAVCCSLRDQSIDGKYV 254
Query: 247 YTPSAFQIRYGGYKGVVAVDP---TSSTKLSLRKSMLKYKSES--TSLDILAN-SKYQPC 300
+ P AFQIR+ G+KG++ V P + ++ LR+SM K++ L+I+ ++
Sbjct: 255 HIPRAFQIRFLGFKGMLTVCPDKIMNGNQIILRESMKKFEGNPLFNKLEIVEGLNESDTA 314
Query: 301 FLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKEL 360
+NRQ+I LLS+L ++D VF Q++ +A+
Sbjct: 315 NINRQIIILLSSLQVKDEVFLNAQKKALARNKC--------------------------- 347
Query: 361 LMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQ 420
+ D E FRA + + +T+ F+++ G LDET L+ QV V
Sbjct: 348 -----RNDEE---------FRA-RIKNAKEKTKFFMKDSVIAKGILDETKQLKDNQVIVI 392
Query: 421 CSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLH-----HM 475
++G + KV+V +NP LHP D+R+ V +P + H
Sbjct: 393 ---------------TKNGRMVPGGKKVIVFRNPGLHPRDVRIFETVSIPDYYQKWFGHE 437
Query: 476 VD----CVVFPAK-------GKRPHTNECSGSDL---DGDVYFVCWDHELIPPLQFPPMD 521
VD ++F A G+ + + S S+L DGD +F W+ E+IP Q+
Sbjct: 438 VDLKGSVIIFAADCQQHNIPGELGNFHLFSISNLQFKDGDRFFTSWNTEIIPQAQYIQSW 497
Query: 522 YTPAPE 527
++ A E
Sbjct: 498 WSKANE 503
>gi|333440980|gb|AEF32765.1| RdRP2 [Ascaris suum]
Length = 384
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 132/309 (42%), Gaps = 56/309 (18%)
Query: 48 DGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSP 107
DG V KV++TP+++ PE+ + NRV+R++ + D LR+ F D+D ++ + P
Sbjct: 87 DGYRRVRKVVLTPTRMLLVVPELLMGNRVLRTHDESGDRALRVQFRDDDGTRMKHNTVGP 146
Query: 108 LISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMF---------- 157
+ T V + L G+ I D+ F LA SNSQ++DN + F
Sbjct: 147 YLIQTT----------VHNALVRGVYIADRHFVYLASSNSQMRDNGCYFFDDGDGGXXXX 196
Query: 158 -----ASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREA----LHVD-SSDIE 207
AR+GQ F ++E LH + +
Sbjct: 197 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLMARMGQCFTQAKECSIKLLHRRYNKTFD 256
Query: 208 IIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP 267
II ++ G Y FSDG G++S E A+ +A + PS FQIR+ G KGVV+VDP
Sbjct: 257 IIGG--MDSSGEPYTFSDGCGRLSPEFAQRIADDLHLGKCVPSCFQIRFRGIKGVVSVDP 314
Query: 268 ------TSSTKLSLRKSMLKYKSE------------------STSLDILANSKYQPCFLN 303
+ +T+ ++ +M Y + S ++I+ S P LN
Sbjct: 315 WLTERASWATEHNIADNMENYNKKNKLYMLFRPSQDKFHAPLSHKIEIVKYSSPTPVCLN 374
Query: 304 RQLITLLST 312
R I +L T
Sbjct: 375 RPYIAILLT 383
>gi|156374435|ref|XP_001629812.1| predicted protein [Nematostella vectensis]
gi|156216821|gb|EDO37749.1| predicted protein [Nematostella vectensis]
Length = 110
Score = 102 bits (254), Expect = 8e-19, Method: Composition-based stats.
Identities = 49/121 (40%), Positives = 69/121 (57%), Gaps = 12/121 (9%)
Query: 389 RTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKV 448
+TR R+ + R + G D L G+ + + S E + N KV
Sbjct: 1 KTRLRVLVPKSRMVFGVCDPYEVLRQGECYFRPSIFDEDEGDFQAAN-----------KV 49
Query: 449 VVAKNPCLHPGDMRVLRAV-DVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCW 507
V +NPC HPGD+RVL+ V + P L+H+ DC+VFP +G+RPH ECSG+D+DGD +FV W
Sbjct: 50 AVIRNPCYHPGDVRVLKLVRNKPELNHLRDCIVFPVRGRRPHALECSGADMDGDKFFVTW 109
Query: 508 D 508
D
Sbjct: 110 D 110
>gi|396489578|ref|XP_003843139.1| similar to RNA-directed RNA polymerase 2 [Leptosphaeria maculans JN3]
gi|312219717|emb|CBX99660.1| similar to RNA-directed RNA polymerase 2 [Leptosphaeria maculans JN3]
Length = 1435
Score = 102 bits (253), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 93/398 (23%), Positives = 158/398 (39%), Gaps = 65/398 (16%)
Query: 174 DFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDV---------EVEDDGITY--- 221
D +N+ K +R+ + L S I ++ D+ E D+G+ +
Sbjct: 686 DINQWQNLYKAYSRIALGLSRTIPTLVFKPSQIRLVKDIRSDGTPEANEFNDEGLDWDEK 745
Query: 222 -----CFSDGIGKISAELAEIV----AKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK 272
+DG +IS A I+ + G PSAFQ R G KG+ V + T+
Sbjct: 746 CSQPQVMNDGCARISVGAARIIWEMYCRATGSDEPLPSAFQGRIRGAKGMWMVSAEAHTR 805
Query: 273 --------LSLRKSMLKYKSESTSLDILANSKYQPCF-------------LNRQLITLLS 311
+ + S KY+ + + ++ F L+ I +L
Sbjct: 806 DEEHNDIWIEISDSQSKYEPHEADKNDATFNSHRLTFNYVKHSHVNGSTDLHISFIPILV 865
Query: 312 TLGIRDHVFE----KKQREGVAQLDAILTDPLKAHEALELMSSG-------------ENT 354
G++ V K AQL +L++P+K H + SS +
Sbjct: 866 DRGVKRDVIADFIIKHLNVERAQLLDMLSEPVKLHNWVTKQSSATSGVIPWEAALPVSQS 925
Query: 355 NVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLES 414
+K LL G+ P PFL +L + + R + + ++G D G LE
Sbjct: 926 EKVKLLLRAGFTPQDSPFLAKVLINLIRQRQSVMEQKLRAPLGSATFLLGLADPEGVLEP 985
Query: 415 GQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHH 474
GQV + S F+D L +E V++A+ P D++ +R V L H
Sbjct: 986 GQVHISFSLP----FVDEFSRQTYRHLDGLE--VLIARQPACRRSDIQKVRVVTYSKLAH 1039
Query: 475 MVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI 512
+ D +VFP +G+ P + G D DGD+++ CW+++L+
Sbjct: 1040 LRDVIVFPTRGQYPLAGKLQGGDYDGDIFWTCWENDLV 1077
>gi|296417840|ref|XP_002838558.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634502|emb|CAZ82749.1| unnamed protein product [Tuber melanosporum]
Length = 1700
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 118/474 (24%), Positives = 204/474 (43%), Gaps = 76/474 (16%)
Query: 181 VAKYAARLGQSFGSSREALHVDSSDIEIIPDV-----EVEDDGITYCFSDGIGKISAELA 235
V K+ +R+ F ++ + + S +EI+ D+ EV +DG + K+ E+
Sbjct: 997 VPKFWSRISLGFSTAVPSFKFEPSQVEIVRDMKSTTGEVMNDGCSVVSP----KVMQEIR 1052
Query: 236 EIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT---SSTKLSLR--KSMLKYKSES---- 286
I+ + TP+A Q R GG KGV +DP+ SS ++ ++ S LKY +
Sbjct: 1053 RILDLH-----ETPTAVQARLGGAKGVWMIDPSIDWSSDEIFIKVTDSQLKYSGYADDQD 1107
Query: 287 ---TSLDILANS-KYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDA----ILTDP 338
+LDIL S + +P +N QLI +L G+ ++ E + + ++ P
Sbjct: 1108 WARMTLDILHISHEPRPATINIQLIPILENRGVPFQALKELTEEHLEEDLDELFQVIDKP 1167
Query: 339 LKAHEAL-ELMSSGENTNVLKELLMCGYKPDV--EPFLLMMLQTF--RASNLL------- 386
++ + + S G + + G P E +L++ F R+ +L
Sbjct: 1168 VELRKWIYNRGSVGRARISFNGIQVTGSMPSTKHEMAILLLESGFLVRSCRVLMDHVRVM 1227
Query: 387 ------ELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGE 440
EL+ + I I + ++ D TGTL G+V ++ S FLD R+
Sbjct: 1228 IDQYCEELKEKLHIRIPHSTTLLCVADPTGTLREGEVSLRFSNG----FLDPKTLRRTQ- 1282
Query: 441 LGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMV-----DCVVFPAKGKRPHTNECSG 495
V+ G ++VA+NP P D++ ++AVD+ H + D +VF +G + + SG
Sbjct: 1283 --VITGDILVARNPAHIPSDIQKVKAVDIQPYHSLALRELQDVIVFSTQGDQSLASLLSG 1340
Query: 496 SDLDGDVYFVCWDHELIPPLQFPPMDY-------TPAPEKVLARDMTIEDVEEYFADYIV 548
D DGD +VCW+ L+ P P Y P K R + + F + +
Sbjct: 1341 GDYDGDKPWVCWEERLVKPFTNSPTTYVEVDAMVAPWFNKSQTRVSGLNPSQPGFFERFL 1400
Query: 549 --------NDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVA 594
ND+ C + E + + L+LAKL ++ VD K G++
Sbjct: 1401 QIGLRSSFNDNFLGQCTSIWEKRCYEKNDIADLEALKLAKLCSLLVDAPKQGMS 1454
>gi|115400193|ref|XP_001215685.1| predicted protein [Aspergillus terreus NIH2624]
gi|114191351|gb|EAU33051.1| predicted protein [Aspergillus terreus NIH2624]
Length = 1285
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 110/440 (25%), Positives = 185/440 (42%), Gaps = 65/440 (14%)
Query: 206 IEIIPD--VEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVV 263
+++ P+ + ++D+ +DG +S LA+ + G T PSAFQ R G KG+
Sbjct: 595 VKLTPNQIIHLKDEPGRPVMNDGCALMSRGLAKKICVILGITGSIPSAFQGRIAGAKGLW 654
Query: 264 AVDP-------------TSSTKLSLRKSMLKYKS----ESTSLDILANSK-YQPCFLNRQ 305
VD S ++L ++ ++K+ E + +++ SK P LN Q
Sbjct: 655 MVDKHDSDVSEEDIWLQISDSQLKIKPHPAEWKTLIDPEKLTFEVVKWSKPLHPVSLNIQ 714
Query: 306 LITLLSTLG-IRDHVFEKKQREGVAQLDAILTDPLKAHEALELMS--------------- 349
L+ +L G +R+ + E R G+ + + L+ + + S
Sbjct: 715 LLAILERGGPVRERIAELT-RAGMQSIWKDFAEVLERNCPILCRSLIQKTKPPGEQDRRM 773
Query: 350 ---SGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCL 406
+ N+ + L G+KP +L L+ L I +
Sbjct: 774 EDWAASNSECVIRLCEAGFKPRSFRYLRHRLRNCLRELLERYENELHIEVPLSTYAFCIA 833
Query: 407 DETGTLESGQVFVQCSASRRR---EFLDNSCNNRSGELGVVEG-KVVVAKNPCLHPGDMR 462
D G L+ +V S++ R +F DN +++G V+VA+ P P D++
Sbjct: 834 DPYGVLKPDEVHFGFSSNWRDPQGQFEDN----------LLDGMDVLVARVPAHFPSDIQ 883
Query: 463 VLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP-------PL 515
+RAV P L H D +VFP G P ++ SG D DGD +VCWD E++ P
Sbjct: 884 RVRAVWKPELRHFKDVIVFPTTGDVPLAHKLSGGDYDGDTPWVCWDQEIVQNFQNSDLPR 943
Query: 516 QFPPMDYTPAPEKVLARDMTIEDVEEYFADYIV-NDSLGVICNAHVVHADLEPDKA-RSN 573
++PP + V RD I+ V+E+ I N +L + + H L D++ S
Sbjct: 944 EYPPEHFGLTNHSVPMRD--IQSVDEFLQSAITYNLTLSSLGKCTIEHERLAYDESIGSP 1001
Query: 574 QCLELAKLSTIAVDFSKTGV 593
++LA L + VD K G
Sbjct: 1002 NAMKLASLLSHLVDARKAGT 1021
>gi|299740358|ref|XP_001838853.2| RNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
gi|298404206|gb|EAU82968.2| RNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
Length = 1548
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 128/278 (46%), Gaps = 37/278 (13%)
Query: 119 TIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDI 178
T E + + G+ + ++ SNSQ++ S ++ + + D ++GDF I
Sbjct: 33 TTTEYLNRMFKAGVFLNGVQYRFYHHSNSQLRGRSCFLREANSDKELDDRIYALGDFSRI 92
Query: 179 KNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIV 238
N+AK A R+G F S+ ++D + +E I D+E+ + FSDG G IS L + +
Sbjct: 93 NNIAKRAKRIGLLFSSAEVDFNLDPTFVEDIGDIEIGGE----VFSDGCGLISKSLTKQI 148
Query: 239 AKNCGFTI----YTPSAFQIRYGGYKGVVAVDP------------TSSTKLSLRKSMLKY 282
AK YTP QIRY GYKGV+ + P T RKSM K+
Sbjct: 149 AKAKKLMFRGIRYTPVVIQIRYEGYKGVLMLHPDLDERNRQREPGTPPCYAQFRKSMKKF 208
Query: 283 KSEST-SLDILANSK-YQPCFLNRQLITLLSTLGIRDHVFEKKQRE---GVAQLDAILTD 337
K+ S S ++ SK Y LN +ITL+ +LG+ KQ+E +A + + TD
Sbjct: 209 KATSDHSFSVVGYSKPYSFGRLNNDIITLIHSLGVTKEKLVAKQQEYFDWIASITQLDTD 268
Query: 338 PLKA------------HEALELMSSGENTNVLKELLMC 363
P A EA+ L + E + +L +L C
Sbjct: 269 PTAALDFLSCTDKYAEAEAIFLHDAEERSKILNDLRDC 306
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 73/143 (51%), Gaps = 10/143 (6%)
Query: 464 LRAVDVPSLHHMVDCVVFPAKGKRPHTNEC----SGSDLDGDVYFVCWDHELIPPLQFPP 519
LRAVD P L H+VDC+VF + +RP + SG DLDGD +FVCWD +L+PP P
Sbjct: 309 LRAVDHPQLSHLVDCLVFASAVRRPGSKPAPSLSSGGDLDGDEFFVCWDQDLVPPRVSEP 368
Query: 520 MDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELA 579
DY P E + +T D+ +FA Y + + + H A P A +C EL
Sbjct: 369 YDYPPNKEP-RPKAVTRADLANHFASY-TSSGVAKVSALHNKWAISSPLGALCVECQELN 426
Query: 580 KLSTIAVDFSKTGVAATIPSGLR 602
L + +VD G IP L+
Sbjct: 427 ALHSQSVD----GAPIKIPERLQ 445
>gi|238580928|ref|XP_002389446.1| hypothetical protein MPER_11425 [Moniliophthora perniciosa FA553]
gi|215451719|gb|EEB90376.1| hypothetical protein MPER_11425 [Moniliophthora perniciosa FA553]
Length = 316
Score = 99.8 bits (247), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 136/288 (47%), Gaps = 37/288 (12%)
Query: 22 VRWLEEQYRKYVLSRRFLTSPAVAL---DDGLIYVNKVLVTPSKVYFSGPEISLSNRVVR 78
V+ L++ ++K + L++ A+ DDG+ V +TP+ + F GP SNRV+R
Sbjct: 20 VQTLKQCFQKVKRTHDRLSNTALVTSRDDDGIFLCMHVQITPTGMIFDGPIPERSNRVIR 79
Query: 79 SYPDE-IDNFLRLSFVDEDLDKLYSTVLSPLISSTNEE--RHTTIYERVLSTLRNGIVIG 135
Y E NFLR+SF DE +L N E I RV R G+ +
Sbjct: 80 QYKSEHHHNFLRVSFNDEGRLQL----------QFNREIDGDDFIKRRVQPFFREGLRVA 129
Query: 136 DKKFETLAFSNSQVKDNSMWMFAS----RPELTAADIRESMGDFRD-------IKNVAKY 184
+ F L +S S +K+++++ AS ++T A + ES+G F D I A+Y
Sbjct: 130 GRVFYFLGYSQSALKEHAVYFMASFEQDGKQITTASVIESLGSFADLPFDSKLIYCPARY 189
Query: 185 AARLGQSFGSSREALHVDSSDIEIIPDVEVED-DGITYCFSDGIGKISAELAEIVAKNCG 243
AAR+ Q F ++ + + +PD+E D +G +DG+G +S E A +
Sbjct: 190 AARISQGFTATDPTTTEVENIVLDLPDIESTDKNGKKQIHTDGVGTMSPEFARSIHAERQ 249
Query: 244 FTIYT--------PSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKY 282
QIR+ G KGV++VD T S K + LR SM+K+
Sbjct: 250 SRRRGRRRPLSEYARVLQIRFLGSKGVISVDHTLSGKTVCLRPSMVKF 297
>gi|302823993|ref|XP_002993644.1| hypothetical protein SELMODRAFT_431698 [Selaginella moellendorffii]
gi|300138572|gb|EFJ05336.1| hypothetical protein SELMODRAFT_431698 [Selaginella moellendorffii]
Length = 884
Score = 99.4 bits (246), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 129/490 (26%), Positives = 203/490 (41%), Gaps = 93/490 (18%)
Query: 211 DVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIR--YGG--YKGVVAVD 266
++ V +G +DG G IS +LA+ P+ Q+R Y G KG +
Sbjct: 276 EIAVGCNGKPLIHTDGTGFISEDLAKQ---------EYPALLQVRLFYHGIAVKGTLLTL 326
Query: 267 PTSSTK-LSLRKSMLKYKSES--------TSLDILANSKYQP-CFLNRQLITLLSTLGIR 316
T K + R SMLK K++ SL+I S P L+R +I LL G+
Sbjct: 327 KTLQHKTIVYRDSMLKVKADPKLANCPSFNSLEICTTSHKPPVASLSRYVIALLLEGGVP 386
Query: 317 DHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMM 376
+ F + +E +A+ L D AH S G+ + + +++ G P + FL
Sbjct: 387 ESFFIQVVQEAIAKAMTPLQDIAAAHRLCSRFSFGD---MPRRMILAGI-PLTDHFLRNS 442
Query: 377 LQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNN 436
L T + L + + + ++ +MG D T TL QV + L+N +
Sbjct: 443 LMTMIRTQL-KRYAKANVPLEGSYYLMGSADPTNTLARNQVAI---------LLENGPLH 492
Query: 437 RSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVD----CVVFPAKGKRPHTNE 492
R KV+V K+P +HPGD+ V A L + ++FP KG R +E
Sbjct: 493 RH--------KVLVYKHPGMHPGDVHVFEATWNQELESSLGNSKYVIIFPTKGPRSVVHE 544
Query: 493 CSGSDLDGDVYFVCWDHE---LIPPLQFP------------PMDYTPAPEKVLARDMTIE 537
+ SDLDGD+Y++C + + L P Q P P +PE +++R + +
Sbjct: 545 IANSDLDGDLYWICTNEQVSNLYKP-QLPWQEKRTNGTTAVPSCLGMSPEVIMSRLVAM- 602
Query: 538 DVEEYFADYIVNDSLGVICNAHVVHAD---------LEPDKARSNQCLELAKLSTIAVDF 588
A + N ++ ++H D + + R N LELA L +A+D
Sbjct: 603 ---FLRAIFKPNFAISRAATNWLIHMDKYLSTSFDNVREREFRQNCLLELADLYYLALDA 659
Query: 589 SKTGVAATIPSGLRVE-IYPDFME------------KQDKTCYESQRVIGKLYRAVKDIA 635
KTG TI L + I P F+ +Q Y S + GK+Y V ++
Sbjct: 660 DKTGEMVTIEDRLLCDKIKPHFLVEENSNNPNRRKIQQQDNVYRSTSIFGKIYNVVTEVI 719
Query: 636 PPTATIKSFT 645
A K FT
Sbjct: 720 ENEA--KEFT 727
>gi|226294787|gb|EEH50207.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 615
Score = 99.0 bits (245), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 99/206 (48%), Gaps = 16/206 (7%)
Query: 33 VLSRRFLTSPAVALDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSF 92
VL R L+ + I +++ VTP +Y GP++ NRV+R Y +D+FLR+ F
Sbjct: 398 VLRERALSRSNRQIHLNNILIHRAQVTPCGIYLYGPQLETKNRVLRIYEANVDHFLRVEF 457
Query: 93 VDEDLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDN 152
VDE D P+ + R L+ GI I +KFE L FS+S ++
Sbjct: 458 VDESGD--------PIRYDSRASVDAIFQSRFKGVLKEGITIAGRKFEFLGFSHSSLRSQ 509
Query: 153 SMWM---FASRPEL-TAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI 208
+ W F S L A I +++G F I + AK AAR+GQ+F + ++ + + +
Sbjct: 510 TCWFVAPFVSGGTLYNATVIIQNLGRFDHIHSPAKQAARIGQTFSDTLTSIPISFDMLSV 569
Query: 209 IPDVEVEDDGITYCFSDGIGKISAEL 234
DVE FSDG+G IS L
Sbjct: 570 GEDVERNGR----VFSDGVGTISPSL 591
>gi|242053113|ref|XP_002455702.1| hypothetical protein SORBIDRAFT_03g022060 [Sorghum bicolor]
gi|241927677|gb|EES00822.1| hypothetical protein SORBIDRAFT_03g022060 [Sorghum bicolor]
Length = 108
Score = 98.6 bits (244), Expect = 1e-17, Method: Composition-based stats.
Identities = 45/108 (41%), Positives = 71/108 (65%)
Query: 520 MDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELA 579
MDYT +++ +T+E+++++F Y+ ND+LGVI H++HAD P A + +CL+LA
Sbjct: 1 MDYTATRPRIMDHAVTLEEIQKHFDSYMTNDTLGVISTVHLIHADHNPLNAHTPKCLQLA 60
Query: 580 KLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKL 627
L ++AVDF+KTG A + LR +PDFME+ ++ Y S V+ KL
Sbjct: 61 ALHSMAVDFAKTGPPAEMSLTLRPREFPDFMEQWERPMYVSNNVLDKL 108
>gi|347839298|emb|CCD53870.1| RNA Polymerase RNA dependante [Botryotinia fuckeliana]
Length = 1007
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 94/374 (25%), Positives = 157/374 (41%), Gaps = 52/374 (13%)
Query: 183 KYAARLGQSFGSSREALHVDSSDI---EIIPDVEVEDDGITYCFSDGIGKISAELAEIVA 239
K AR +R + V+ + I E I + +V D TY +DG G++S LA +
Sbjct: 622 KLFARTALVVSRNRATVTVEETQIRRKEDIRNPDVNDPSKTYVMTDGAGRMSLALARKIV 681
Query: 240 KNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK---LSLRKSMLKYK-----------SE 285
Y PSAFQ R+G KG+ VD T + + L K+K
Sbjct: 682 LKLELA-YIPSAFQGRFGQAKGLWIVDRTQDIENDWIELYGEQCKWKRGKKGSHDYGHPS 740
Query: 286 STSLDILANSK-YQPCFLNRQLITLLSTLGIRDHVFEKK----QREGVAQ----LDAILT 336
+ +++ +S + LN QL+ +L E +EG+ Q L + L
Sbjct: 741 HRTFEVVGHSAPLKTADLNTQLLPILMHQATNPKTMENAIVGALKEGLKQSLEELRSALN 800
Query: 337 DPLKAHEALELMSSG------------------ENTNVLKELLMCGYKPDVEPFLLMMLQ 378
P + L +S +N + L LL G+ P +++ +++
Sbjct: 801 SPQELRCWNRLTNSSLQDRVKNGTLQWLGGLPTKNEDKLNLLLDAGFDPRRLQYVMDLVK 860
Query: 379 TFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRS 438
EL+ R I + + D G LE +V + S+ F+DN
Sbjct: 861 KSFDMKCAELKERLNITVAKSTKVYMVPDFWGVLEPNEVHLDFSS-----FVDNETG--L 913
Query: 439 GELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDL 498
++ + + V+VA+NP +P D++ + AV+ L H+ D +VF KG ++ SG D
Sbjct: 914 SDIQLEDMDVLVARNPAHYPSDIQRVTAVNKHELRHLKDVIVFSTKGYPALADKLSGGDY 973
Query: 499 DGDVYFVCWDHELI 512
DGD+ +VCWD ++
Sbjct: 974 DGDIAWVCWDRAIV 987
>gi|345568648|gb|EGX51541.1| hypothetical protein AOL_s00054g240 [Arthrobotrys oligospora ATCC
24927]
Length = 1615
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 112/410 (27%), Positives = 174/410 (42%), Gaps = 62/410 (15%)
Query: 156 MFA-SRPELTAADIRESMGDFRDI-KNV----AKYAARLGQSFGSSREALHVDSSDIEI- 208
MFA S P L D R ++ I KN+ K AR+ F ++ ++ D ++I+
Sbjct: 828 MFAVSGPGLETVDQRSAVEWLVPIEKNMDSKQCKLYARIALGFSTTTPSVVFDKNEIDYS 887
Query: 209 IPDV-----EVEDDG--ITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKG 261
I D+ E+ DG Y +DG G S + VA+ G Y PSA Q R G KG
Sbjct: 888 IKDIKAKGLELGRDGKLPEYSLTDGCGLASPAVFRAVARQLGLP-YPPSAVQARIGAAKG 946
Query: 262 VVAVDPT-----SSTKLSLRKSMLKY-----KSESTSLDILANSK-YQPCFLNRQLITLL 310
+ +DP+ ++ +R K+ + E +LDI SK +P LN Q I +L
Sbjct: 947 LWIMDPSIPLDSEELRIRIRPDQNKFDGISLEPEHRTLDICNTSKPLKPSALNLQFIVIL 1006
Query: 311 STLGIRDHVFEKKQREG----VAQL--DAILTDPLKAHEALELMSSGENTNVLKELLMCG 364
G+ + E+ RE V +L L D + LE + + + + M G
Sbjct: 1007 LHNGVTEATLEQLLREDIRNEVTELFNGGRLDDGAFLRKYLERVKLSGSQRDGRAIAMKG 1066
Query: 365 YKPD---------VEPFLLMMLQTFR-------ASNLLELRTRTRIFIQNGRAMMGCLDE 408
P + + QT + + L+ + RI I D
Sbjct: 1067 RIPLGLAERAIDLINAGFTLQNQTLKDWFEKVLTDHCDTLKDKMRIRIPWSCQPYCVPDP 1126
Query: 409 TGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVD 468
+G L+ GQV+++ + F+D + V+ G V+V +NP D++ + AVD
Sbjct: 1127 SGKLKKGQVYLRFGPESK--FIDPKT---MMAIDVLRGGVLVGRNPAHFASDIQKVTAVD 1181
Query: 469 VPSLHHMVDCVVFPAKGKRPHTNE------CSGSDLDGDVYFVCWDHELI 512
VP L + D +VFPA P +N+ SG D DGD + CWD L+
Sbjct: 1182 VPELRFLTDVIVFPAD---PESNDRSLADYLSGGDYDGDRVWTCWDQRLV 1228
>gi|156058730|ref|XP_001595288.1| hypothetical protein SS1G_03377 [Sclerotinia sclerotiorum 1980]
gi|154701164|gb|EDO00903.1| hypothetical protein SS1G_03377 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1390
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 98/381 (25%), Positives = 159/381 (41%), Gaps = 54/381 (14%)
Query: 177 DIKNVAKYAARLGQSFGSSREALHVDSSDI---EIIPDVEVEDDGITYCFSDGIGKISAE 233
D + K AR +R + VD + I E I + +V + TY +DG G++S
Sbjct: 616 DYQPYMKLFARTALVVSRNRATVTVDQAHIRRREDIRNPDVNNPKKTYVMTDGAGRLSLA 675
Query: 234 LAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTS---STKLSLRKSMLKYK------- 283
LA + + Y P+AFQ R+G KG+ VD + S + L K++
Sbjct: 676 LARKIVFELELS-YIPAAFQGRFGEAKGLWIVDRSEDIESDWIELYDEQCKWERGEEGSP 734
Query: 284 -----SESTSLDILANSKYQPCFLNRQLITLL-----STLGIRDHVFEKKQREGVAQ--- 330
S T + ++ + LN QL+ LL +R+ + +EG+ Q
Sbjct: 735 EFDHWSHRTFEVVGHSAPLKTADLNTQLLPLLVHQATDPRAMRNAILNA-LKEGLKQSLE 793
Query: 331 -LDAILTDPLKAHEALELMSSGENTNV------------------LKELLMCGYKPDVEP 371
L LT P + + L +S V L LL G+ P
Sbjct: 794 ELKTALTSPQELRSWIRLTNSSVQDRVKNGAIQWRGGLPAKHEDRLSTLLDAGFDPRKLH 853
Query: 372 FLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLD 431
+++ + + EL+ R I + + D G LE +V + S+ F+D
Sbjct: 854 YIMELAKKAFDMKCEELKERLNITVAKSTKVYMVPDFWGVLEPNEVHLNFSS-----FVD 908
Query: 432 NSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTN 491
N +L V+ V+VA+NP +P D++ + AV L H+ D +VF KG +
Sbjct: 909 NESGLSDTQLENVD--VLVARNPAHYPSDIQRVTAVSKHELRHLKDVIVFSTKGYPSLAD 966
Query: 492 ECSGSDLDGDVYFVCWDHELI 512
+ SG D DGD+ +VCWD ++
Sbjct: 967 KLSGGDYDGDIAWVCWDPAIV 987
>gi|42569168|ref|NP_179583.3| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
gi|322967572|sp|O82188.2|RDR5_ARATH RecName: Full=Probable RNA-dependent RNA polymerase 5;
Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
5
gi|330251850|gb|AEC06944.1| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
Length = 977
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 147/607 (24%), Positives = 250/607 (41%), Gaps = 111/607 (18%)
Query: 110 SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAF------------SNSQVK------D 151
SST H Y+ + +NGI+IG ++++ F S +VK D
Sbjct: 256 SSTYSIDHYFTYKGIA---KNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKKVKCYFIRTD 312
Query: 152 NSMWMFASRPE-LTAADIRESMGDFRDIK---NVAKYAARLGQSFGSSREALHVDSSDIE 207
++ + P LT I E+ F + +A Y AR S + L VD + I
Sbjct: 313 STAFYDMQNPYILTGKSIYEARMHFMHVHRAPTLANYMARFSLIL-SKTKTLEVDMTGIT 371
Query: 208 I--IPDVEVED-DGITY-------CF-SDGIGKISAELAEIVAKNC--GFTIYTPS---- 250
I D+ D DG C SDG G IS +LA + N G + + S
Sbjct: 372 FDQIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGKCLRSESIQEA 431
Query: 251 ---------AFQIRYGGY--KGVVAVDPTSSTK-LSLRKSMLKYKSEST--------SLD 290
F++ Y GY KG ++ + + +R SM+K + + +L+
Sbjct: 432 CYQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALE 491
Query: 291 ILANSKY-QPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMS 349
++ S + L++ L+ LLS GI + F + + +I + A A
Sbjct: 492 VVTTSNPPKRTKLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKRAALNAALNYG 551
Query: 350 SGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDET 409
++ N ++++ G D EP L L + +L+ ++ + +MG +D T
Sbjct: 552 EMDDQNA-AQMILVGIPLD-EPHLKNYLSILLKTEKNDLKA-GKLPVTESYYLMGTVDPT 608
Query: 410 GTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDV 469
G L+ +V V E G + G+V+V +NP LH GD+ +L+A V
Sbjct: 609 GALKEDEVCVIL------------------ESGQISGEVLVYRNPGLHFGDIHILKATYV 650
Query: 470 PSLHHMVD----CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQF--PPMDYT 523
+L V V FP KG R +E +G D DGD+YF+ + EL+ + P + T
Sbjct: 651 KALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLENFKPSEPWVSLT 710
Query: 524 P-------------APEKVLARDMTIEDVEEYFADYIVN---DSLGVICNAHVVHAD--L 565
P +PE++ + + A ++ DS I + ++ D
Sbjct: 711 PPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRFLILGDDRA 770
Query: 566 EPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIG 625
E + LEL + A+D K G +P+ L+ +I+P +ME+ K ++S ++G
Sbjct: 771 EEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERDKK--FQSTSILG 828
Query: 626 KLYRAVK 632
++ VK
Sbjct: 829 LIFDFVK 835
>gi|242216941|ref|XP_002474274.1| predicted protein [Postia placenta Mad-698-R]
gi|220726566|gb|EED80511.1| predicted protein [Postia placenta Mad-698-R]
Length = 998
Score = 96.7 bits (239), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 115/479 (24%), Positives = 181/479 (37%), Gaps = 113/479 (23%)
Query: 128 LRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNV---AKY 184
+R+G+++ D+ + L F++ VK+ + F + A + +G+ RD+ + KY
Sbjct: 71 MRDGLLLRDEHYTFLGFTDGHVKEGKLVFFREDASWSVARFMDYIGNLRDVYSAYGYGKY 130
Query: 185 AARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGF 244
AARL SF S+ E+L V IPD D + SDG G I A V +N G
Sbjct: 131 AARLALSFSSTVESLDVPFVKAARIPDRRARDGSL---HSDGCGLIRHSFAMDVCRNNGI 187
Query: 245 TIYTPSAFQIRYGGYKGVVAVDPTSS-TKLSLRKSMLKYKSESTSLDILANSKYQPCFLN 303
T FQIR GG KG++ P + K++LR
Sbjct: 188 APDT-CVFQIRRGGIKGLLVRYPDNQFDKVTLR--------------------------- 219
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELL-- 361
+ IR +FEK ++ + + IL + +A + ++ NT + L
Sbjct: 220 ---------MAIRRAIFEKMLQDQLDLIGCILHNRDQAEKYIKGELDASNTTAFNQDLYA 270
Query: 362 MCGYKPDV-EPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQ 420
+ K D+ EP++ L+ F+ L + + +++ + G +DE+G LE +VF+
Sbjct: 271 ILLAKHDLNEPYVEWKLRQFQQQQCNLLHKKLNLRVEDSCYVFGVIDESGVLEEDEVFL- 329
Query: 421 CSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVV 480
N G GV+ V+V
Sbjct: 330 ---------------NLPGRTGVLTRDVIV------------------------------ 344
Query: 481 FPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDY--TPA----PEKVLARDM 534
G DLDGD YFV W+ LIP P TP P + L D
Sbjct: 345 --------------GRDLDGDEYFVTWEPGLIPRDMPEPQHRAGTPTANTKPPRRLTEDA 390
Query: 535 TIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGV 593
+ + F + N +L + AD P A ELA + A+D K+G
Sbjct: 391 MNDAALDTFIRHKYNKTLRFAAKKWLDVADATPHLANYPYAQELAPIIESALDCIKSGA 449
>gi|119370386|gb|ABL68090.1| putative RNA-directed RNA polymerase 3 [Nicotiana attenuata]
Length = 110
Score = 96.7 bits (239), Expect = 5e-17, Method: Composition-based stats.
Identities = 49/111 (44%), Positives = 70/111 (63%), Gaps = 1/111 (0%)
Query: 302 LNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELL 361
LNRQ++TLLS+L ++D +F + Q+E ++ LD +L D A + + S E N +L
Sbjct: 1 LNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVIT-ASCAEAGNTAAIML 59
Query: 362 MCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTL 412
G+KP EP L ML + RAS L +LR + RIF+ +GR +MGCLDE G L
Sbjct: 60 SAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGEL 110
>gi|297832162|ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329803|gb|EFH60222.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 981
Score = 95.5 bits (236), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 171/708 (24%), Positives = 282/708 (39%), Gaps = 144/708 (20%)
Query: 18 CYEPVRWLEEQYRKYV--LSRRFLTSPAVALDDGLIYVNKVLVTPSKVY-FSGPEISLSN 74
YE W + R+Y RR L D G + + V P Y F GP + +
Sbjct: 183 AYEAAVW-DRLGRRYCPQTDRRMLQ-----WDSGKTHYYQCHVAPDGSYTFKGPLLEHTG 236
Query: 75 RVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVI 134
+ + +N L + F D P SST Y+ + +NGI+I
Sbjct: 237 THLHKVLGD-ENVLTVKFAD-----------VPKNSSTYSNDRYFTYKEIA---KNGIMI 281
Query: 135 GDKKFETLAF------------SNSQVK------DNSMWMFASRPEL-TAADIRESMGDF 175
G ++++ F S +VK D++ P + T I E+ F
Sbjct: 282 GLRRYQFFVFKDGGKEEKKKDLSTKKVKCYFIRTDSTASCDMENPYIFTGKSIHEARMHF 341
Query: 176 RDIK---NVAKYAARLGQSFGSSREALHVDSSDIEIIP--DVEVED-DGITY-------C 222
+ +A Y AR S + L VD + I P D+ D DG C
Sbjct: 342 MHVHRAPTLANYMARFSLIL-SKTKTLEVDMTGITFDPIDDIHCHDQDGKDVLDKNKKPC 400
Query: 223 F-SDGIGKISAELAEIVAKNCGFTIYT-----------------PSAFQIR--YGGY--K 260
SDG G IS +LA + C I+ P Q R Y GY K
Sbjct: 401 IHSDGTGYISEDLARM----CPLNIFKGKCLRSENIQEACNQDPPLLIQFRMFYDGYAVK 456
Query: 261 GVVAVDPTSSTK-LSLRKSMLKYKSEST--------SLDILANSKY-QPCFLNRQLITLL 310
G ++ + + +R SM+K + + +L+++ S + L++ L+ LL
Sbjct: 457 GTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPRRTKLSKNLVALL 516
Query: 311 STLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALEL-MSSGE-NTNVLKELLMCGYKPD 368
S GI + F + + +I + H AL + ++ GE + ++++ G D
Sbjct: 517 SYGGIPNEFFLDILLNTLEESKSIFYN---KHAALNVALNYGEMDDQNAAQMILVGIPLD 573
Query: 369 VEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRRE 428
EP L L + +L+ R+ + +MG +D TG L+ +V V
Sbjct: 574 -EPHLKNHLSILLKTEKNDLKA-GRLPVTESYYLMGTVDPTGELKEDEVCVIL------- 624
Query: 429 FLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVD----CVVFPAK 484
E G + G+V+V +NP LH GD+ +L+A V +L V V FP K
Sbjct: 625 -----------ESGQISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKYAVFFPQK 673
Query: 485 GKRPHTNECSGSDLDGDVYFVCWDHELIPPLQF--PPMDYTP-------------APEKV 529
G R +E +G D DGD+YF+ + EL+ + P + TP +PE++
Sbjct: 674 GPRSLGDEIAGGDFDGDMYFISRNPELLEHFKPSEPWVSLTPPSKSNSGRAPSQLSPEEL 733
Query: 530 LARDMTIEDVEEYFADYIVN---DSLGVICNAHVVHAD--LEPDKARSNQCLELAKLSTI 584
+ + A ++ DS I + ++ D E + L+L +
Sbjct: 734 EEELFEMFLKAGFHASNVIGIAADSWLTIMDRLLILGDERAEEKAEMKKKMLKLIDIYYD 793
Query: 585 AVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVK 632
A+D K G +P+ LR +I+P +ME++ K ++S ++G +Y VK
Sbjct: 794 ALDAPKKGDKVYLPNELRPDIFPHYMEREKK--FKSTSILGLIYDFVK 839
>gi|440633788|gb|ELR03707.1| hypothetical protein GMDG_06341 [Geomyces destructans 20631-21]
Length = 1330
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 144/335 (42%), Gaps = 57/335 (17%)
Query: 222 CFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTS---STKLSLRKS 278
+DG G+IS +LA +A+ YTPSAFQ R GG KG+ VD T + + S
Sbjct: 663 VMNDGCGQISRKLAHHIAQKLKLD-YTPSAFQARIGGAKGMWIVDVKDFGDKTNIKIYPS 721
Query: 279 MLKYKSESTSLD--------ILANSKYQPCFLNRQLITLL------STLGIRD---HVFE 321
+K+ + S +D I + + LN Q + +L + G+RD V E
Sbjct: 722 QVKWDNNSFFVDPSHRIFEVICWSRPVRSATLNLQFLPILEDRGRNNGKGMRDALSRVLE 781
Query: 322 K-------KQREGVAQLDAI----------LTDPLK----AHEALELMSSGENTNVLKEL 360
+QRE + A +TD K +EA S GE N+L
Sbjct: 782 NGLTYEISRQREAMDSPQAFRKWVRETAPRITDRNKLGQVGYEAGLPKSQGEKMNLL--- 838
Query: 361 LMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQ 420
L G+ P FL + + L+ + I + M+ +D G L +V V
Sbjct: 839 LDAGFNPKELCFLRDLAWKANVARGEILKKKLNISVGRSAYMLMVVDFAGILGPREVHVG 898
Query: 421 CSASRRRE---FLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVD 477
S + + E F D +N ++VA++P + D++ +RAV P L + D
Sbjct: 899 FSTAFKDESTDFCDTILSNMD---------ILVARSPAHYTSDIQKVRAVFKPELSALKD 949
Query: 478 CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI 512
+VF +G P E SG D DGD+ +VCW E++
Sbjct: 950 VIVFSTRGDFPLAGELSGGDYDGDIAWVCWQTEIV 984
>gi|322695803|gb|EFY87605.1| Rnai Polymerase [Metarhizium acridum CQMa 102]
Length = 685
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 140/326 (42%), Gaps = 46/326 (14%)
Query: 223 FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP----TSSTKLSLRKS 278
+DGIG+IS LA +A G T P AFQ R GG KG+ +D + S
Sbjct: 1 MNDGIGRISKALAMKIASKLGLT-ELPCAFQARLGGAKGMWIIDSDPILGDGDWIVTYAS 59
Query: 279 MLKYK-----SESTSLDILANSKY-QPCFLNRQLITLLSTLGI-----RDHVFEKKQREG 327
+K+ S + ++ SK +P LN+Q I +L I RD + +R
Sbjct: 60 QIKWDCDHEDSHHRTFEVKEWSKEPRPASLNQQFIPVLEARAINPYKMRDTISAHLRRGL 119
Query: 328 VAQLDAILTDPLKAHEALELMSSGENTN--------------------VLKELLMCGYKP 367
+ +L A T + E + G + V+ LL G+ P
Sbjct: 120 LEELAAQRTAMEDSAELRLWLQQGGGSKPEGLDNSMAFLGCLPRDPKKVMAVLLDSGFHP 179
Query: 368 DVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRR 427
+L + + L+ + +I + ++ +D + TLE +V V S +
Sbjct: 180 KSCKYLQDLFRDAARDRAAFLKAKMKICVPCSAYLLMVVDFSSTLEEDEVHVSFSTKFQ- 238
Query: 428 EFLDNSCNNRSGELGVVEG-KVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGK 486
+D C+ ++EG V+VA+ P P D++ ++ V P L H+ D +VF KG+
Sbjct: 239 --VDGFCDT------LLEGMDVLVARAPSHLPSDIQRVKVVSRPQLRHLKDVIVFSTKGR 290
Query: 487 RPHTNECSGSDLDGDVYFVCWDHELI 512
++ SG D DGD +VCWD E++
Sbjct: 291 SSLADKLSGGDYDGDRAWVCWDQEIV 316
>gi|156390354|ref|XP_001635236.1| predicted protein [Nematostella vectensis]
gi|156222327|gb|EDO43173.1| predicted protein [Nematostella vectensis]
Length = 127
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 66/120 (55%), Gaps = 11/120 (9%)
Query: 390 TRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVV 449
++ RI + N R + G D G LE GQ + + V +V+
Sbjct: 18 SKLRILVPNSRVVFGVCDPFGELEYGQCVFHPTLYDEVRIAEYQ----------VATEVM 67
Query: 450 VAKNPCLHPGDMRVLRAV-DVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWD 508
V +NPC +PGD+RVL+ V ++P ++ DC+VFP KG RPH +E SG DLDGD +FV WD
Sbjct: 68 VVRNPCYYPGDIRVLKLVKNLPQYAYLNDCIVFPTKGSRPHADESSGGDLDGDEFFVSWD 127
>gi|452845289|gb|EME47222.1| hypothetical protein DOTSEDRAFT_69242 [Dothistroma septosporum
NZE10]
Length = 816
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 107/446 (23%), Positives = 172/446 (38%), Gaps = 91/446 (20%)
Query: 183 KYAARLGQSFGSSREALHVDSSDIE----------IIPDVEVEDDGITYCF--------- 223
K ARL S + L D +DI+ + D ED + Y F
Sbjct: 75 KAYARLDLSASRTYPTLAFDLADIDYDAEDMLSTNVADDRRFEDPQLAYRFKEHFNPCKR 134
Query: 224 ---SDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRK--- 277
SDG +ISA +A+ G PS Q R G KG+ V T S K
Sbjct: 135 IVMSDGCSEISAWAMAQIAQMLGLP-EVPSVIQGRIFGAKGIWYVSADQDTARSTEKPPG 193
Query: 278 -------SMLK----------YKSESTSLDIL-ANSKYQPCFLNRQLITLLS-----TLG 314
S +K + E +++++ A+ +P L+ + LL L
Sbjct: 194 KNIKIANSQIKVRYPLHEVRHFGKELLTMNVVKASGPCKPSILHIGFMPLLEDRKVPELA 253
Query: 315 IRDHVFEKKQREGVAQLDAILTDPLKAHEALELM---------------------SSGEN 353
IR + + Q E + L L P++ E + S GE
Sbjct: 254 IRGFIGPRVQAE-MNDLLTSLETPVQLREWMAQQNEYYEICNRENGITTAGGFPWSKGEQ 312
Query: 354 TNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLE 413
+ ++L G+ P + +L ++ + L R +I + ++G D G L+
Sbjct: 313 ---IIQMLESGFFPQEDAYLAELVVEMVGNYLTLKRKNFKIHVPRSTTVIGISDPLGCLQ 369
Query: 414 SGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLH 473
G++ + S R S + G V+ +NP + DM+ LRAV P L
Sbjct: 370 PGEIHIGFSTPFRDHKAGASWMHLHGM------NVLSTRNPSMAGSDMQKLRAVYKPELA 423
Query: 474 HMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDY---TPAPEK-- 528
H+ D VVFP++G RP + G D DGD +++CW+ L+ P P + P PE+
Sbjct: 424 HLRDVVVFPSQGMRPLAGKLQGGDYDGDTFWLCWEPSLVDPFLNAPAPWETDVPTPEQLG 483
Query: 529 VLARDMTIED------VEEYFADYIV 548
++ T+ D + AD++V
Sbjct: 484 IIKDSTTLADTVGSCPTDSALADWLV 509
>gi|222617921|gb|EEE54053.1| hypothetical protein OsJ_00746 [Oryza sativa Japonica Group]
Length = 1148
Score = 92.4 bits (228), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 136/551 (24%), Positives = 213/551 (38%), Gaps = 110/551 (19%)
Query: 164 TAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDI--EIIPD--------VE 213
T R+ R + +AKY R S L VD S++ ++I D E
Sbjct: 479 TIGQARDLFMHIRTVLTLAKYMLRFAL-IVSKTITLDVDLSEVLVKLIDDEPCLDEHGKE 537
Query: 214 VEDDGITYCFSDGIGKISAELAE-IVAKNCGFTIYTPSAFQIR----YGG--YKGVVAVD 266
V DG +DG G IS +LA+ N + P I+ Y G KG V VD
Sbjct: 538 VFRDGERLIHTDGTGLISEDLAQKCTYSNSKGKLLEPQPLLIQLRLFYNGSAVKGTVLVD 597
Query: 267 PTSSTK-LSLRKSMLKYKS--------ESTSLDILA----------------------NS 295
+ + +R SMLK K+ SLDI++ ++
Sbjct: 598 KRLPPRTIHIRPSMLKIKTYPELSGVQSVNSLDIVSARNAKKSLSGVQSVNSFEIVSTSN 657
Query: 296 KYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTN 355
+ F + LI LL G+ + F + + + + D D A + E++
Sbjct: 658 RSGRTFTSNNLIALLHYGGVPEEFFMELLQTAIEEADNARFDYAGALNIAFNYADMEDS- 716
Query: 356 VLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRA-------MMGCLDE 408
+ +++ G + + +++ S L L R I+NG+ +MG D
Sbjct: 717 MPARMILSG---------IPLEESYLQSRLDFLSLLERKGIKNGKIPIDDCYYLMGTADP 767
Query: 409 TGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVD 468
TG L +V V LD G V G V+V K P LHPGD+ VL+A
Sbjct: 768 TGKLGPNEVCV---------ILD---------YGQVSGDVLVYKYPGLHPGDIHVLKATY 809
Query: 469 VPSLHHMVD----CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTP 524
+ +V ++FP G+R +E + SD DGD+Y+V + +L+ + P + P
Sbjct: 810 SSDIEKVVGNSKHAILFPTTGQRSLADEMANSDFDGDIYWVSLNPKLLEHFK-PSKPWVP 868
Query: 525 APEKVLARDMTIEDVEE------YFADYI-------------VNDSLGVICNAHVVHADL 565
A + ED E F +++ + L + V D
Sbjct: 869 AITPNGTKQKGPEDFNESELERVLFHEFLKTRFAPSYARATAATNWLVYMDRLLTVSLDE 928
Query: 566 EPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIG 625
K + L+L L +A+D K G IP L V+ YP FM++ Y S ++G
Sbjct: 929 SEKKLIEKKMLKLVDLYYLALDAPKMGNKVNIPRDLMVKQYPHFMDRS--PSYHSSSILG 986
Query: 626 KLYRAVKDIAP 636
K+Y D P
Sbjct: 987 KIYDKAGDPKP 997
>gi|449296300|gb|EMC92320.1| hypothetical protein BAUCODRAFT_569676 [Baudoinia compniacensis
UAMH 10762]
Length = 1367
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 88/359 (24%), Positives = 157/359 (43%), Gaps = 46/359 (12%)
Query: 202 DSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKG 261
D+SD + D + +DG G I+ A V T + PSAFQ+R G KG
Sbjct: 518 DASDFNDASLPFLRSDQVPVAMTDGCGYITYAAARRVQSILNLT-WLPSAFQVRIAGAKG 576
Query: 262 VVAV--DPT----SSTKLSLRKSMLKYKSESTSLDILA--------------NSKYQPCF 301
++ V D T + ++ L ++ K + + LD A +S P F
Sbjct: 577 LLVVRQDITQGDMAQERIGLTQTQRKLQYSDSDLDDPARRTLDVVDYSKSVRSSHIPPGF 636
Query: 302 LNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDP--------------LKAHEALEL 347
L + I D V E+ + E L A+ + +A +
Sbjct: 637 LPVLRDRGVPKEAILDVVGEQVKLETSGFLQALKSRSTLHRWVLCQRNVVGFRAAAGGIV 696
Query: 348 MSSGENTNVLKE---LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRT-RIFIQNGRAMM 403
+++G N ++ LL ++P P+L + F A ++ +++ + ++ + + ++M
Sbjct: 697 LTAGFPANTIERILFLLESWFEPAQCPYLRKQVLDF-AGHVFDVKAKAWKLHLGSCTSVM 755
Query: 404 GCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRV 463
D T TL+ G+ ++ S + D + L ++ ++VA+NPC+ DM+
Sbjct: 756 MIPDWTQTLKPGEAYLSFS----KPIKDGTSGRVWSSLAGMD--ILVARNPCIRNSDMQK 809
Query: 464 LRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDY 522
LRAV +L + D +VF +G R ++ SG D DGD+ +VCWD L+ P + P +
Sbjct: 810 LRAVSCAALAGIFDVIVFSTQGPRSLASKLSGGDYDGDIAWVCWDPRLVLPFKNAPAPW 868
>gi|42569164|ref|NP_179581.2| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
gi|322967566|sp|O82190.2|RDR3_ARATH RecName: Full=Probable RNA-dependent RNA polymerase 3;
Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
3
gi|330251848|gb|AEC06942.1| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
Length = 992
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 155/681 (22%), Positives = 262/681 (38%), Gaps = 140/681 (20%)
Query: 120 IYERVLSTLRNGIVIGDKKFETLAF-------------------------SNSQVKDNSM 154
+Y +NGI++G +++ F S + + +
Sbjct: 267 LYSTYKGIAKNGIMVGLRRYRFFVFKDGGKEEKKKDVSTKGVKCYFIRTDSTASIDMQNP 326
Query: 155 WMFASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDI--EIIPDV 212
++FA + + + R + ++ Y +R S + L VD + I E I D+
Sbjct: 327 YIFAGK---SMHEARMHFMHVNTLSSLPNYMSRFSLIL-SKTKTLEVDMTGITFEQIDDI 382
Query: 213 EVED---------DGITYCFSDGIGKISAELA----------------EIVAKNCGFTIY 247
D +G SDG G IS +LA I +KN F
Sbjct: 383 HCHDQDDKDVLDKNGKPCIHSDGTGYISEDLARMCPVNIFKGKSMRSNNIQSKNLNFEGQ 442
Query: 248 TPSA--------FQIRYGGY--KGVVAVDPTSSTK-LSLRKSMLKYKSEST--------S 288
P F+I Y GY KG + + + +R SM+K + T S
Sbjct: 443 GPCGQEPPLLIQFRIFYNGYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNS 502
Query: 289 LDILANSKY-QPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALEL 347
L+++ S + L+R L+ LLS G+ + F R + + I A +A
Sbjct: 503 LEVVTTSNPPRKARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAA-- 560
Query: 348 MSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLD 407
++ G++ ++++ G D EP+L L + L+ R I +MG +D
Sbjct: 561 INYGDD-QYTADMILVGIPLD-EPYLKDRLSYLLKTERNALKA-GRFPIDESYYIMGTVD 617
Query: 408 ETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAV 467
TG L+ ++ V + G + G V+V +NP LH GD+ VL+A
Sbjct: 618 PTGELKENEICVILHS------------------GQISGDVLVYRNPGLHFGDIHVLKAT 659
Query: 468 DVPSLHHMVD----CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ-FPPMDY 522
V +L V V FP KG R +E +G D DGD+YF+ + +L+ + P
Sbjct: 660 YVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVS 719
Query: 523 TPAPEKVLARDMTIEDVEEYF----------ADYIVNDSLGVICNAHVVHAD----LEPD 568
+ P K+ E EE A + D +G+ + + D L +
Sbjct: 720 SSKPSKIYCGRKPSELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDE 779
Query: 569 KA-----RSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRV 623
A R L+L + A+D K G +P L ++ +P +ME+ K + S +
Sbjct: 780 SAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSI 839
Query: 624 IGKLYRAVKDI---APPTATIKS---FTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYD 677
+G ++ V PP + I F E +S+ D +E+Y ++ + E D
Sbjct: 840 LGLIFDTVDSHNAEEPPPSEISKLWYFEDEPVPKSH-MDKFTSWYENYRSEMSQAMMETD 898
Query: 678 ----NRLGNLM------DYYG 688
N+L N + D+YG
Sbjct: 899 KVKRNQLTNEVIQRYKQDFYG 919
>gi|336378305|gb|EGO19463.1| hypothetical protein SERLADRAFT_442939 [Serpula lacrymans var.
lacrymans S7.9]
Length = 733
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 119/447 (26%), Positives = 176/447 (39%), Gaps = 100/447 (22%)
Query: 223 FSDGIGKISAELAEIV------AKNCGFTIYTPSAFQIRYGGYKGVVAVDP-TSSTKLSL 275
+DG G IS L V K PSA+Q R GG KGV+ DP + L
Sbjct: 129 MTDGCGTISVALCNEVWSSLRNRKKHKHVKNVPSAYQFRIGGAKGVLVQDPRLEGNVVCL 188
Query: 276 RKSMLKYKSEST-SLDILANSKYQP--CFLNRQLITLLSTLGIRDHVFEKKQREGVAQLD 332
R S K+ + +LDI + S QP FLNR LI LL LG + Q +++
Sbjct: 189 RPSQTKFDAPGIRTLDIQSTSS-QPKAMFLNRPLIVLLEYLGTDSNHIIALQNNAISEAQ 247
Query: 333 AILTDPLKAHEALE---------LMSSGENTNVLKE---------LLMCGYKPDVEPFLL 374
L A + + L S N L + L+ +K D+ LL
Sbjct: 248 TAHNSFLDASKMFQKNNFGASFRLPSLFHNLATLLDIHPGDSSLGLVSTSWKHDLVAKLL 307
Query: 375 MMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSC 434
+ T+ L EL+ R I + ++G DE
Sbjct: 308 QCVSTYA---LRELKYRAHIAVPGSYTLLG--DE-------------------------- 336
Query: 435 NNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECS 494
R+G +EG+V++ ++ +HPGD++V+ AV P L H+ + VVF KG R +
Sbjct: 337 --RTGLYKSIEGRVLITRSAQIHPGDVQVVTAVRHPELSHLTNVVVFSCKGNRSLASCLG 394
Query: 495 GSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGV 554
G L GD + + D L P P Y P K + D+
Sbjct: 395 GGGLAGDDFNLLLDESLFPKKVAKPGTYDSLPIKKTINPCSASDI--------------- 439
Query: 555 ICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIP-----SGLRVEIYPDF 609
AD++ ++CL+LA+ ++ AVDF KTG + SGL PDF
Sbjct: 440 --------ADVK--DPGCSECLQLAQYASHAVDFPKTGSPVRMKDLPQLSGLS---KPDF 486
Query: 610 MEKQDKTC-----YESQRVIGKLYRAV 631
+ + Y S +++G L+R V
Sbjct: 487 LAPEGANIRSDQYYFSPKLLGVLHRRV 513
>gi|218187687|gb|EEC70114.1| hypothetical protein OsI_00773 [Oryza sativa Indica Group]
Length = 1172
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 136/551 (24%), Positives = 213/551 (38%), Gaps = 110/551 (19%)
Query: 164 TAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDI--EIIPD--------VE 213
T R+ R + +AKY R S L VD S++ ++I D E
Sbjct: 490 TIGQARDLFMHIRTVLTLAKYMLRFAL-IVSKTITLDVDLSEVLVKLIDDEPCLDEHGKE 548
Query: 214 VEDDGITYCFSDGIGKISAELAE-IVAKNCGFTIYTPSAFQIR----YGG--YKGVVAVD 266
V DG +DG G IS +LA+ N + P I+ Y G KG V VD
Sbjct: 549 VFRDGERLIHTDGTGLISEDLAQKCTYSNSKGKLLEPQPLLIQLRLFYNGSAVKGTVLVD 608
Query: 267 PTSSTK-LSLRKSMLKYKS--------ESTSLDILA----------------------NS 295
+ + +R SMLK K+ SLDI++ ++
Sbjct: 609 KRLPPRTIHIRPSMLKIKTYPELSGVQSVNSLDIVSARNAKKSLSGVQSVNSFEIVSTSN 668
Query: 296 KYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTN 355
+ F + LI LL G+ + F + + + + D D A + E++
Sbjct: 669 RSGRTFTSNNLIALLHYGGVPEEFFMELLQTAIEEADNARFDYAGALNIAFNYADMEDS- 727
Query: 356 VLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRA-------MMGCLDE 408
+ +++ G + + +++ S L L R I+NG+ +MG D
Sbjct: 728 MPARMILSG---------IPLEESYLQSRLDFLSLLERKGIKNGKIPIDDCYYLMGTADP 778
Query: 409 TGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVD 468
TG L +V V LD G V G V+V K P LHPGD+ VL+A
Sbjct: 779 TGKLGPNEVCV---------ILD---------YGQVSGDVLVYKYPGLHPGDIHVLKATY 820
Query: 469 VPSLHHMVD----CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTP 524
+ +V ++FP G+R +E + SD DGD+Y+V + +L+ + P + P
Sbjct: 821 SSDIGKVVGNSKHAILFPTTGQRSLADEMANSDFDGDIYWVSLNPKLLEHFK-PSKPWVP 879
Query: 525 APEKVLARDMTIEDVEE------YFADYI-------------VNDSLGVICNAHVVHADL 565
A + ED E F +++ + L + V D
Sbjct: 880 AITPNGTKQKGPEDFNESELERVLFHEFLKTRFAPSYARATAATNWLVYMDRLLTVSLDE 939
Query: 566 EPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIG 625
K + L+L L +A+D K G IP L V+ YP FM++ Y S ++G
Sbjct: 940 SEKKLIEKKMLKLVDLYYLALDAPKMGNKVNIPRDLMVKQYPHFMDR--SPSYHSSSILG 997
Query: 626 KLYRAVKDIAP 636
K+Y D P
Sbjct: 998 KIYDKAGDPKP 1008
>gi|3687225|gb|AAC62123.1| hypothetical protein [Arabidopsis thaliana]
Length = 929
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 142/591 (24%), Positives = 233/591 (39%), Gaps = 129/591 (21%)
Query: 110 SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAF------------SNSQVK------D 151
SST H Y+ + +NGI+IG ++++ F S +VK D
Sbjct: 226 SSTYSIDHYFTYKGIA---KNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKKVKCYFIRTD 282
Query: 152 NSMWMFASRPE-LTAADIRESMGDFRDIK---NVAKYAARLGQSFGSSREALHVDSSDIE 207
++ + P LT I E+ F + +A Y AR S + L VD + I
Sbjct: 283 STAFYDMQNPYILTGKSIYEARMHFMHVHRAPTLANYMARFSLIL-SKTKTLEVDMTGIT 341
Query: 208 I--IPDV--------EVEDDGITYCF-SDGIGKISAELAEIVAKNC--GFTIYTPS---- 250
I D+ +V D C SDG G IS +LA + N G + + S
Sbjct: 342 FDQIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGKCLRSESIQPL 401
Query: 251 --AFQIRYGGY--KGVVAVDPTSSTK-LSLRKSMLKYKSESTSLDILANSKYQPCFLNRQ 305
F++ Y GY KG ++ + + +R SM+K + P N
Sbjct: 402 LIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKD-------------PSLSNFS 448
Query: 306 LITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGY 365
L + R +F G A L+ D A ++++ G
Sbjct: 449 TFNALEVVTTRSQIF------GAAALNYGEMDDQNA----------------AQMILVGI 486
Query: 366 KPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASR 425
D EP L L + +L+ ++ + +MG +D TG L+ +V V
Sbjct: 487 PLD-EPHLKNYLSILLKTEKNDLKA-GKLPVTESYYLMGTVDPTGALKEDEVCVIL---- 540
Query: 426 RREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVD----CVVF 481
E G + G+V+V +NP LH GD+ +L+A V +L V V F
Sbjct: 541 --------------ESGQISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFF 586
Query: 482 PAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQF--PPMDYTP-------------AP 526
P KG R +E +G D DGD+YF+ + EL+ + P + TP +P
Sbjct: 587 PQKGPRSLGDEIAGGDFDGDMYFISRNPELLENFKPSEPWVSLTPPSKSNSGRAPSQLSP 646
Query: 527 EKVLARDMTIEDVEEYFADYIVN---DSLGVICNAHVVHAD--LEPDKARSNQCLELAKL 581
E++ + + A ++ DS I + ++ D E + LEL +
Sbjct: 647 EELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDI 706
Query: 582 STIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVK 632
A+D K G +P+ L+ +I+P +ME+ K ++S ++G ++ VK
Sbjct: 707 YYDALDAPKKGDKVYLPNKLKPDIFPHYMERDKK--FQSTSILGLIFDFVK 755
>gi|407919378|gb|EKG12628.1| RNA-dependent RNA polymerase eukaryotic-type [Macrophomina phaseolina
MS6]
Length = 1485
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 124/509 (24%), Positives = 195/509 (38%), Gaps = 133/509 (26%)
Query: 183 KYAARLGQSFGSSREALHVDSSDI----EIIPDVEVEDDGIT-------------YCFSD 225
K AR+ ++ L S + +I+ D E+ED +D
Sbjct: 666 KAFARISLGLTATTPTLQFKPSQVRYVTDIVADGELEDPAFNDKSLVWRNDKRPKRVMND 725
Query: 226 GIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAV----DPTSSTKL----SLRK 277
G IS A + + T PS FQ R GG KG+ + D T S L +
Sbjct: 726 GCSLISVGAARKLWEQTNRTEPLPSTFQGRIGGAKGMWMISDSPDTTDSRHLKVWIQISD 785
Query: 278 SMLKYKSEST------------SLDILANS----------KYQPCFLNRQ---------- 305
S LK+K+ S + D+ + + + P NR
Sbjct: 786 SQLKFKAHSEDQSESEYDPHRLTFDLHSTTGTAGESSVYLSFFPILENRGVSAKALQKLF 845
Query: 306 -----------LITLLSTLGIR------DHVFEKKQREGVAQLDAILTDPLKAHE-ALEL 347
L ++ + +G+R + + E++ R+ A + PL+ HE A+ L
Sbjct: 846 ESHLDREREKILASVTNRVGLRTWLNQQNSLAEERNRDENMTWQASM--PLQLHEKAILL 903
Query: 348 MSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLD 407
SG + + C Y DV LL A +L LR R+ + + G D
Sbjct: 904 AESGFD-------ISCDYLADVAHRLL-------AKSLRLLRQNIRVPLPRCTYIKGVAD 949
Query: 408 ETGTLESGQVFVQCSASRRREFLD---NSC----NNRSGELGVVEGKVVVAKNPCLHPGD 460
G L+ G++ V + R F+D C NNR+ V+VA+NP L D
Sbjct: 950 PLGVLKPGEIHVHFT----RRFVDEVSGDCLSYLNNRN---------VLVARNPALRASD 996
Query: 461 MRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ-FPP 519
++ +R+ L H+ D VVFP +G P + G D DGD +++CW+ E++ P + PP
Sbjct: 997 IQKVRSTFNLRLGHLKDVVVFPTRGTFPLAGKLQGGDYDGDTFWICWEPEMVEPFKNAPP 1056
Query: 520 MDYTPAPEKVLAR------------DMTIEDVEEYFADYIVNDSLGVICNAH----VVHA 563
P P+K + D E + E F LG H +
Sbjct: 1057 PLEDPDPKKCQIKVDKRKLADMCKGDSISEFLRESFKFRCKPSLLGQATKFHERLVYMEG 1116
Query: 564 DLEPDKARSNQCLELAKLSTIAVDFSKTG 592
L +++R+ LA L + VD+SK G
Sbjct: 1117 SLATERSRA-----LADLHDLLVDYSKNG 1140
>gi|327301211|ref|XP_003235298.1| hypothetical protein TERG_04355 [Trichophyton rubrum CBS 118892]
gi|326462650|gb|EGD88103.1| hypothetical protein TERG_04355 [Trichophyton rubrum CBS 118892]
Length = 1302
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 107/440 (24%), Positives = 162/440 (36%), Gaps = 100/440 (22%)
Query: 192 FGSSREALHVDSSDIEIIPDVEV-EDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPS 250
F R L ++ I + P+ + +DD SDG +S L +A + + P+
Sbjct: 600 FTRIRLGLSRTTATITLRPEEFIYDDDPRQEKMSDGCAMMSRSLGRAIADSLCLS-KVPT 658
Query: 251 AFQIRYGGYKG--VVAVD-------------------------------PTSSTKLSLRK 277
FQ R G KG VVA D P T L + K
Sbjct: 659 CFQGRIAGAKGIWVVAKDNRDIHVKGLRHFETERGYWLVINASQLKVQPPPCDTSLMIDK 718
Query: 278 SMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTD 337
L + S S QP LN Q + +L G L IL +
Sbjct: 719 HQLTFDVSSYS------QPPQPVHLNTQFLMVLQDRGTNKEYI----------LSLILEE 762
Query: 338 PLKAHEALELMSSGEN------------------------------TNVLKELLMCGYKP 367
K + L+ +G++ T L LL G+ P
Sbjct: 763 ADKFYSEFLLVQNGDSAACRAWVRQNGGDASSQIPALNESTFSHSLTGRLNMLLDAGFSP 822
Query: 368 DVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRR 427
F+ + + + ++ +I + D G LE GQV +
Sbjct: 823 STLAFVRRLFKEYSLGGFVQKLEALKIKTPQSTYVYCIPDPYGVLEEGQVHLD------- 875
Query: 428 EFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKR 487
L +S + + +L ++ V+VA+ P P D++ RAV P+L ++ + +FP KG+
Sbjct: 876 --LGDSWEDGTTDLDGID--VLVARAPAHLPSDIQKCRAVFHPALRYLKNVAIFPTKGEV 931
Query: 488 PHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPE-----KVLAR--DMTIEDVE 540
P + SG D DGD +VCWD E++ P PM P PE KV R DM +
Sbjct: 932 PLASLLSGGDYDGDEVWVCWDQEIVKPFVNYPMPDIPEPEEYGLVKVSRRVGDMPFDRFM 991
Query: 541 EY-FADYIVNDSLGVICNAH 559
EY F + + LG+ N H
Sbjct: 992 EYSFIFNMSQNPLGLCTNEH 1011
>gi|3687227|gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]
Length = 966
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 139/572 (24%), Positives = 229/572 (40%), Gaps = 111/572 (19%)
Query: 195 SREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELA----------------EIV 238
SR ++ D D+ ++ +G SDG G IS +LA I
Sbjct: 355 SRYSIDQDDKDV-------LDKNGKPCIHSDGTGYISEDLARMCPVNIFKGKSMRSNNIQ 407
Query: 239 AKNCGFTIYTPSA--------FQIRYGGY--KGVVAVDPTSSTK-LSLRKSMLKYKSEST 287
+KN F P F+I Y GY KG + + + +R SM+K + T
Sbjct: 408 SKNLNFEGQGPCGQEPPLLIQFRIFYNGYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRT 467
Query: 288 --------SLDILANSKY-QPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDP 338
SL+++ S + L+R L+ LLS G+ + F R + + I
Sbjct: 468 LSNLSTFNSLEVVTTSNPPRKARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSE 527
Query: 339 LKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQN 398
A +A ++ G++ ++++ G D EP+L L + L+ R I
Sbjct: 528 RAAFKAA--INYGDD-QYTADMILVGIPLD-EPYLKDRLSYLLKTERNALKA-GRFPIDE 582
Query: 399 GRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHP 458
+MG +D TG L+ ++ V + G + G V+V +NP LH
Sbjct: 583 SYYIMGTVDPTGELKENEICVILHS------------------GQISGDVLVYRNPGLHF 624
Query: 459 GDMRVLRAVDVPSLHHMVD----CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP 514
GD+ VL+A V +L V V FP KG R +E +G D DGD+YF+ + +L+
Sbjct: 625 GDIHVLKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLE- 683
Query: 515 LQFPPMD---YTPAPEKVLARDMTIEDVEEYF----------ADYIVNDSLGVICNAHVV 561
F P + + P K+ E EE A + D +G+ + +
Sbjct: 684 -HFKPSEPWVSSSKPSKIYCGRKPSELSEEELEEELFKMFLKARFCKRDVIGMAADCWLG 742
Query: 562 HAD----LEPDKA-----RSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEK 612
D L + A R L+L + A+D K G +P L ++ +P +ME+
Sbjct: 743 IMDPFLTLGDESAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMER 802
Query: 613 QDKTCYESQRVIGKLYRAVKDI---APPTATIKS---FTKEVAMQSYDTDMEVDGFEDYI 666
K + S ++G ++ V PP + I F E +S+ D +E+Y
Sbjct: 803 DPKRDFRSTSILGLIFDTVDSHNAEEPPPSEISKLWYFEDEPVPKSH-MDKFTSWYENYR 861
Query: 667 TDAFKYKTEYD----NRLGNLM------DYYG 688
++ + E D N+L N + D+YG
Sbjct: 862 SEMSQAMMETDKVKRNQLTNEVIQRYKQDFYG 893
>gi|375281950|gb|AFA45121.1| RNA-directed RNA polymerase 2 [Plenodomus tracheiphilus]
Length = 1382
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 96/362 (26%), Positives = 138/362 (38%), Gaps = 66/362 (18%)
Query: 215 EDDGITYCFSDGIGKISAELA----EIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSS 270
E G +DG +IS A E G PSAFQ R G KG+ V +
Sbjct: 694 EKPGEPQVMNDGCARISVGAALKIWEAYRSATGSDEPFPSAFQGRIRGAKGMWMVSAEAH 753
Query: 271 TKLSLRKSMLKYKSESTSL---------DILANSK------YQPCFLNRQ------LITL 309
T+ K + ++S S D NS Q F+N I +
Sbjct: 754 TRNEEHKDIWIEIADSQSKFEPALEDEDDNTYNSHRLTFNYVQHSFVNGSTDLHISFIPI 813
Query: 310 LSTLGIRDH----VFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVL-------- 357
L G+ H EK QL LT+P+K H + S N +
Sbjct: 814 LVDRGVERHNIADFMEKHLDIERKQLLETLTEPVKLHNWVTKQGSAIPANGIIAREAALP 873
Query: 358 -------KELLMCGYKPDVEPFLLMMLQTFRASNLLEL-RTRTRIFIQNGRA-------M 402
K LL G+ P PFL A L++L R R + Q RA +
Sbjct: 874 KCIPEKVKYLLRAGFTPQDSPFL--------ARGLMQLIRQRQSVMEQKLRAPLGSATFL 925
Query: 403 MGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMR 462
+G D L G+V + S+ EF NR + +V++A+ P D++
Sbjct: 926 LGLADPENVLRPGEVHINFSSPFVDEF------NRQTYRHLDGLEVLIARQPACRQSDIQ 979
Query: 463 VLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDY 522
+R V P L H+ D VVF +G+ P + G D DGD +++CW+ L+ P + P
Sbjct: 980 KVRVVAHPQLAHLRDVVVFATRGQYPLAGKLQGGDYDGDTFWICWESILVEPFKNAPAPM 1039
Query: 523 TP 524
P
Sbjct: 1040 NP 1041
>gi|398407389|ref|XP_003855160.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
gi|339475044|gb|EGP90136.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
Length = 1316
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 90/348 (25%), Positives = 145/348 (41%), Gaps = 53/348 (15%)
Query: 223 FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGV----------VAVDPTSSTK 272
SDG ++S + + G +T SAFQ R GG KGV V
Sbjct: 601 MSDGCAELSRHAYWKICEQLGGD-HTRSAFQARIGGAKGVWYRAAEIDGSFDVGKPPGPH 659
Query: 273 LSLRKSMLKYKSES--------TSLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEKK 323
+++ +S +K + +S +++ ANS +P L+ + +L G+ V
Sbjct: 660 ITIVQSQIKVQRDSLEDCDPDQRKFNVVKANSYARPSLLHAGFMPILLDRGVPRQVMLDV 719
Query: 324 QREGV-AQLDA-----ILTDPLK----AHEALELMSSGENTN-----------VLKE--- 359
R + A++DA + DPL H EL T + +E
Sbjct: 720 ARTQIKAEVDACEAAIVSPDPLAFRMWLHSQNELYEERNRTRDGGIDTVAGWPIRREERI 779
Query: 360 --LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRT-RIFIQNGRAMMGCLDETGTLESGQ 416
LL G+ P P+L + +L+ R +I + +MG D G LE G+
Sbjct: 780 IRLLESGFVPTQCPYLARDVIDL-VKYTFDLKQRNFKIRLGRSTTLMGIADPKGCLEPGE 838
Query: 417 VFVQCSASRRREFLDNSCNNRSGELGVVEGKV-VVAKNPCLHPGDMRVLRAVDVPSLHHM 475
V V SA F+D + L E +VA+NP + D++ +R V P L H+
Sbjct: 839 VHVNFSAP----FIDPVTKEQFQNLSSPEVAFGLVARNPAMAAWDIQRVRFVYKPELKHL 894
Query: 476 VDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYT 523
D VF ++G RP ++ G D DGD +++CWD +L + P ++
Sbjct: 895 TDLAVFSSRGHRPLASKLQGGDYDGDTFWICWDRKLATLFKNAPAPWS 942
>gi|389742384|gb|EIM83571.1| hypothetical protein STEHIDRAFT_101865 [Stereum hirsutum FP-91666
SS1]
Length = 987
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 101/444 (22%), Positives = 166/444 (37%), Gaps = 86/444 (19%)
Query: 167 DIRESMGDFRDIKN---------VAKYAARLGQSFGSSREALHVDSSDIEIIPD-----V 212
D R S+G F N V+K+ R +S L DIE+IPD +
Sbjct: 217 DRRLSLGQFLSWHNSFSRNSKQAVSKWVTRFDLGLSTSVPVLQFAPDDIEVIPDKYPKDI 276
Query: 213 EVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGV-----VAVDP 267
+ + +DG G ++ VA++ GF + +A Q R G KGV V DP
Sbjct: 277 DQSNASTEQTLTDGCGFMNMAALVAVARSMGF-LSPHTAVQGRIAGSKGVWMLHPVDRDP 335
Query: 268 TSSTKLSLRKSMLK--------YKSESTSLDILANSKYQ-PCFLNRQLITLLSTLGIRDH 318
S ++ +R S +K +K E D L S+ P L+ Q I + G+ +
Sbjct: 336 HSPPRIWIRDSQVKIKLGDQRLWKREHLIFDFLGPSRVTYPGRLSMQFIINMEHNGVPNE 395
Query: 319 VFEKKQREGVAQ-LDAILT--DPLKAH---EALELMSSGENTNVLK-------------- 358
F +G+ + +D ++ P H +AL+ M + + V +
Sbjct: 396 AFALLMDDGLREHIDPLMKWDGPEAPHLLRDALDKMGNVSGSKVQQLAGSSRRALGLGQK 455
Query: 359 -----ELLMCGYKPDVEP------------FLLMMLQTFRASNLLELRTRTR-------- 393
E + G + +P ++M+ F N + LRT R
Sbjct: 456 FGRDNEQPLAGVEDGGDPAAEEAEIFCHERVMMMLAAGFTPKNAIYLRTELRELISREIE 515
Query: 394 -------IFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEG 446
I I + D G LE Q+F Q S L++ + + ++EG
Sbjct: 516 KWVKNYHIVIPHSAEAFIVPDPYGILEPDQIFFQSSVP-----LNDPATGMNMNISILEG 570
Query: 447 KVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVC 506
++ +NP P D++ + AV P D ++ KGK +G D DGD +
Sbjct: 571 PCLIGRNPARLPSDIQKVTAVYRPQYKEYKDVIICSIKGKVSAAFPLAGGDYDGDRALLQ 630
Query: 507 WDHELIPPLQFPPMDYTPAPEKVL 530
W ++ P P + P P +
Sbjct: 631 WSPTVVEPFSRPYAEVVPPPPNFI 654
>gi|242211203|ref|XP_002471441.1| predicted protein [Postia placenta Mad-698-R]
gi|220729496|gb|EED83369.1| predicted protein [Postia placenta Mad-698-R]
Length = 865
Score = 89.4 bits (220), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 123/315 (39%), Gaps = 69/315 (21%)
Query: 302 LNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELL 361
LN +I LL++LG+ KQ + A +D A + + + + LL
Sbjct: 52 LNNDIIVLLASLGVTPEALLAKQESYHQWIRAASSD---WEVAFNFLCAVGQYDFAERLL 108
Query: 362 MCGYKPDVEPFLLMMLQT-FRASNLLELRT-------RTRIFIQNGRAMMGCLDETGTLE 413
+ G + +QT RA + EL + R+R+ I R + G D G L
Sbjct: 109 LDGIE-------AQGVQTKIRACQMSELASFKKNEKFRSRMIILKSRLLFGVCDPYGVLR 161
Query: 414 SGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLH 473
G+V L AVD P L
Sbjct: 162 EGEVH---------------------------------------------LWAVDHPKLA 176
Query: 474 HMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARD 533
H+VDCVVF +KGKR + SG DLDGD + V WD +L+P Y PAP++ +
Sbjct: 177 HLVDCVVFSSKGKRAAPSMSSGGDLDGDRFLVMWDPDLVPKKVAESYTY-PAPKERVGTQ 235
Query: 534 MTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGV 593
+T D+ ++FA Y +L I H P A ++C EL L + AVD G
Sbjct: 236 VTRADLAKHFAAYNTM-ALAKITALHARWVRCSPKGAMGDECQELNALHSQAVD----GA 290
Query: 594 AATIPSGLRVEIYPD 608
IP L PD
Sbjct: 291 PIKIPERLLSPPDPD 305
>gi|397594531|gb|EJK56264.1| hypothetical protein THAOC_23889, partial [Thalassiosira oceanica]
Length = 225
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 81/144 (56%), Gaps = 8/144 (5%)
Query: 494 SGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMT-IEDVE--EYFADYIVND 550
SGSDLDGD++ V WD L PMDY+P P L ++ I D +F + ND
Sbjct: 2 SGSDLDGDLFAVTWDERLFLRQSLDPMDYSPPP--TLGQETPPINDASLLAHFVGHAKND 59
Query: 551 SLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVE-IYP-- 607
+LG I + HA + A ++C+ LAKL++IAVDF K+G+ AT+P L+++ P
Sbjct: 60 NLGRISMLWLDHAVTKGGGAGCHECVRLAKLASIAVDFPKSGIPATLPDDLKIKSTVPRA 119
Query: 608 DFMEKQDKTCYESQRVIGKLYRAV 631
+ E ++ T + ++G+LY V
Sbjct: 120 HWRELKNNTSFHCNSILGRLYDMV 143
>gi|119479435|ref|XP_001259746.1| RNA-directed RNA polymerase, putative [Neosartorya fischeri NRRL 181]
gi|119407900|gb|EAW17849.1| RNA-directed RNA polymerase, putative [Neosartorya fischeri NRRL 181]
Length = 1338
Score = 89.0 bits (219), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 112/439 (25%), Positives = 172/439 (39%), Gaps = 86/439 (19%)
Query: 222 CFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSST--------KL 273
+DG +S LA + G T TPSAFQ R G KG+ VD +S +
Sbjct: 656 VMNDGCALMSRRLANAICDQLGITGNTPSAFQGRIAGAKGLWMVDRHNSGISGGGDDFWI 715
Query: 274 SLRKSMLKYK-----------SESTSLDILANSK-YQPCFLNRQLITLLSTLG-IRDHVF 320
+ S LK + E + +++ SK P LN QL+ +L G +R+++
Sbjct: 716 QISDSQLKIQPHPQAWREPIDDEKLTFEVVKWSKPLHPVELNTQLLAILEHGGQVREYIA 775
Query: 321 EKKQREGVAQLDAILTDPLKAHEA---------LELMSSGENTNVLKEL--LMCGYKPDV 369
E R G+ + L+++ A ++ M+ ++ + + + L D
Sbjct: 776 ELT-RAGIRAISQDFASVLESNSAALCRSLIQKIKPMADDGSSGMSQRMKRLEQWTANDA 834
Query: 370 EPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDET-------------------- 409
E + + F + LR R GR + LD
Sbjct: 835 EAIIRLTEAGFALRSFYPLRKRL------GRCLRDLLDRYADELHIEVPLSTYAFCIADP 888
Query: 410 -GTLESGQV---FVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLR 465
G L+ +V F R +F DN + GV V+V + P P D++ R
Sbjct: 889 YGVLKEDEVHFGFSNNWRDARGQFEDNLLD------GV---DVLVGRLPAHVPSDIQRRR 939
Query: 466 AVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI--------PPLQF 517
AV P L H D +VFP G P + SG D DGD ++CWD ++ P ++
Sbjct: 940 AVWKPELRHFKDVIVFPTTGDIPLAHMLSGGDYDGDTPWICWDQNIVQRFQNSDLPTEEY 999
Query: 518 PPMDYTPAPEKVLARDM--TIEDVEEYFADYIVNDSLGVICNAH-VVHADLEPDKARSNQ 574
PP + V RD+ T E ++ F + +LG H + D D AR+
Sbjct: 1000 PPEHFGLTKHSVSMRDIESTDEFLQSAFTFNLTTSNLGRCTLEHEKIAYDESIDSARAK- 1058
Query: 575 CLELAKLSTIAVDFSKTGV 593
ELA L + VD K GV
Sbjct: 1059 --ELACLLSHLVDGRKGGV 1075
>gi|342884280|gb|EGU84517.1| hypothetical protein FOXB_04968 [Fusarium oxysporum Fo5176]
Length = 206
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 87/172 (50%), Gaps = 13/172 (7%)
Query: 175 FRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAEL 234
+ ++ +A A R+G F S+ ++ E IP+VE D Y F+DG G I+ +L
Sbjct: 1 YASLRRIAAKAKRIGLLFSSATTVTTINPDRCEDIPNVETAD----YIFTDGCGLIALKL 56
Query: 235 AEIVAKNCGFTI----YTPSAFQIRYGGYKGVVAVDPTSSTK---LSLRKSMLKYK-SES 286
A +A+ + YTPS FQIRY GYKGVV VDP + + L LRKSM K+ E
Sbjct: 57 ANELARRTRILLRDNRYTPSVFQIRYRGYKGVVIVDPRMTKQNPLLKLRKSMKKFNGGED 116
Query: 287 TSLDILANSK-YQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTD 337
S ++ SK + +LN + I LL L I KQR+ L TD
Sbjct: 117 HSFAVVEYSKPFSYGYLNDETIILLHALRISQETLLSKQRDHFRLLSNAKTD 168
>gi|451994085|gb|EMD86556.1| hypothetical protein COCHEDRAFT_1034368 [Cochliobolus
heterostrophus C5]
Length = 158
Score = 88.6 bits (218), Expect = 1e-14, Method: Composition-based stats.
Identities = 55/153 (35%), Positives = 83/153 (54%), Gaps = 10/153 (6%)
Query: 542 YFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGL 601
+F +YI ND+LG I +AH+ AD + CLELA+L + AVDF K+G+ A + L
Sbjct: 4 FFVNYIKNDALGPIAHAHLAQADFNENGVGDPICLELAELHSRAVDFPKSGIPAEMKREL 63
Query: 602 RVEIYPDFMEKQ---DKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDME 658
R + +P FMEK+ Y+S++++G LY VK I F K + ++++D D E
Sbjct: 64 RPKKWPHFMEKKYLSQHQIYKSKKILGLLYDEVKLIDFEPQWENQFDKRI-LEAFDLDQE 122
Query: 659 VDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKT 691
+ + A K YD L LM +GI+T
Sbjct: 123 L------LDKAASLKLSYDEALRPLMAKHGIRT 149
>gi|346978355|gb|EGY21807.1| RNA-dependent RNA polymerase [Verticillium dahliae VdLs.17]
Length = 1394
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/338 (25%), Positives = 144/338 (42%), Gaps = 53/338 (15%)
Query: 223 FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGV--VAVDPTSSTKLSLRKSML 280
+DG+ ++S + A+ +A+ G T TPSA+Q R+G KGV V DP + +
Sbjct: 658 MNDGVAEMSPKAAKAIAEYLGLTD-TPSAYQGRFGSAKGVWIVGTDPENKDDFEIETYPS 716
Query: 281 KYKSESTSLD-----ILANSKYQP---CFLNRQLITLLSTLGIRDHVFEKKQREGVAQL- 331
+ K E D ++ +P LN Q I +L ++ + + R +A+
Sbjct: 717 QRKWECDFWDEDHRTFEVKTEARPLRAANLNMQFIPVLVNGDVKRGTDKHRMRNAIAKCL 776
Query: 332 -----------DAILTDPLKAHEAL-ELMSSGENTNVLKE-------------------L 360
+ + DP++ + + E G + L++ L
Sbjct: 777 RTTLKEELARQRSSMDDPVQFRQWIHESFFQGYRNDRLRDQNIRFLAGLPDNEAERVNLL 836
Query: 361 LMCGYKPDVEPFLLMM--LQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVF 418
L G++P FL M FR LL+ + ++ M+ +D G LE G++
Sbjct: 837 LDAGFQPKKLSFLREMSYKMAFRKCELLKSKMNIKVGCSTYAKMV--VDFKGVLEEGEIH 894
Query: 419 VQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDC 478
+ S +F+D L ++ V+VA+ P P D++ +RAV P L H+ D
Sbjct: 895 LGFST----KFMDPDGQFSDTLLHGMD--VLVARAPAHFPSDIQRVRAVFRPELRHLKDV 948
Query: 479 VVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ 516
+VF KG P + SG D DGD +VCWD ++ Q
Sbjct: 949 IVFSIKGDSPLADLLSGGDYDGDQAWVCWDSTIVNSFQ 986
>gi|361130936|gb|EHL02666.1| putative RNA-dependent RNA polymerase 2 [Glarea lozoyensis 74030]
Length = 902
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 87/184 (47%), Gaps = 36/184 (19%)
Query: 484 KGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYF 543
KG R ++ SG DLDGD Y++ WD P F DY + R + ED+ ++F
Sbjct: 537 KGARDLPSKLSGGDLDGDRYYIMWDELARPKRTFAAADYPKVSPVNIGRRVEREDMSDFF 596
Query: 544 ADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVA---ATIPSG 600
++ +D LG I H V AD P +CL +A++ + AVDFSKTG+ + +P G
Sbjct: 597 LQFMESDQLGRIAVNHRVKADQRPGGTNDPECLLMAEMHSTAVDFSKTGIPVDMSRMPFG 656
Query: 601 LRVEIYPDF------------------------MEKQDK-------TCYESQRVIGKLYR 629
+ PDF ME +D+ Y+S++++GKLYR
Sbjct: 657 NKYR--PDFEAPGPHVHIEEDGINFDDPTFEDPMEIEDEDDEYSTYRYYKSEKILGKLYR 714
Query: 630 AVKD 633
A+ +
Sbjct: 715 AIDE 718
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 73/159 (45%), Gaps = 35/159 (22%)
Query: 201 VDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYK 260
+D ++ IPDVE +G T FSDG+G + K
Sbjct: 384 IDLRHVQEIPDVE--RNGRT--FSDGVGTSA----------------------------K 411
Query: 261 GVVAVDPT-SSTKLSLRKSMLKYK-SESTSLDIL-ANSKYQPCFLNRQLITLLSTLGIRD 317
G++++D L +R SM+K++ S+S L+I A + P +LNRQLI +L +G+ D
Sbjct: 412 GMISLDSRLKGNVLVVRDSMIKFRGSKSADLEICEAAYRPLPMYLNRQLIKILEDMGVED 471
Query: 318 HVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNV 356
F Q V L A +P+ A + L S GE ++
Sbjct: 472 DYFLNLQAREVESLRAAADNPMSASKFLTKQSIGETVHL 510
>gi|343429506|emb|CBQ73079.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 1287
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 83/160 (51%), Gaps = 9/160 (5%)
Query: 359 ELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVF 418
E+L+ G+ P+ +L +L A + ++ R I + M D TGTLE G++
Sbjct: 730 EMLLSGFHPEKCAYLADLLVEIAALAMSKVIKRFAIPVARSAEAMVIPDPTGTLEEGEIQ 789
Query: 419 VQCSASRRREFLDN--SCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMV 476
+ S+ DN + R V EG+V+V ++PCL P D+R +RAV P L
Sbjct: 790 FRFSS-------DNIVDPDTRLRLTHVPEGQVLVTRHPCLLPTDIRKVRAVVRPELSLYK 842
Query: 477 DCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ 516
D VVF KGKRP + SG D DGD+ V W+ +L+ P +
Sbjct: 843 DVVVFSTKGKRPLASLLSGGDYDGDLIRVFWEPKLVEPFE 882
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 27/175 (15%)
Query: 181 VAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDD---GITYCFSDGIGKISAELAEI 237
+ KY R+ +S A +D + + DV + D G + +DG G +S +A
Sbjct: 470 LGKYVQRVQLGLSTSVPASVIDK--MTYVADVFGDADPETGKSQEMTDGAGCVSLAVARD 527
Query: 238 VAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSM-----------LKYKSES 286
+A++ G+ PSAFQ R G KGV +DP + L K + ++Y +
Sbjct: 528 IAQHLGYD-SIPSAFQGRVAGAKGVWYIDPAAERTLPNEKPVRWIEIRDSQNKIQYPQDK 586
Query: 287 T------SLDILANSK-YQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAI 334
+D+L S+ + P L+RQ+I +L + G+ F QR A+L AI
Sbjct: 587 PLDLSQLVVDLLGPSRTFAPSTLSRQIILVLQSNGVPISTFADMQR---AELQAI 638
>gi|402577566|gb|EJW71522.1| hypothetical protein WUBG_17571 [Wuchereria bancrofti]
Length = 89
Score = 87.4 bits (215), Expect = 3e-14, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 59/94 (62%), Gaps = 5/94 (5%)
Query: 402 MMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDM 461
M G LDETG L+ GQVFVQ + FL ++ +V+G V++ KNP + GD+
Sbjct: 1 MFGILDETGLLQYGQVFVQFTND---VFLKTP--PKAAAKTIVKGFVLITKNPSIVAGDV 55
Query: 462 RVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSG 495
R+ AVD+P L H+VD VVFP G RPHT+E +G
Sbjct: 56 RIFEAVDLPELRHLVDVVVFPQHGPRPHTDEMAG 89
>gi|42569166|ref|NP_179582.2| RNA-dependent RNA polymerase family protein [Arabidopsis thaliana]
gi|322967571|sp|O82189.2|RDR4_ARATH RecName: Full=Probable RNA-dependent RNA polymerase 4;
Short=AtRDRP4; AltName: Full=RNA-directed RNA polymerase
4
gi|330251849|gb|AEC06943.1| RNA-dependent RNA polymerase family protein [Arabidopsis thaliana]
Length = 927
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 140/605 (23%), Positives = 248/605 (40%), Gaps = 132/605 (21%)
Query: 121 YERVLSTLRNGIVIGDKKFETLAF------------SNSQVKDNSMWMFASRPE------ 162
Y + +NGI++G ++++ F S QVK + ++
Sbjct: 268 YSKYKEIAKNGIMVGLRRYQFFVFKDGGKAEKKKRNSTKQVKCYFIRTGSTASSDMENPY 327
Query: 163 -LTAADIRESMGDFRDIKNV---AKYAARLGQSFGSSREALHVDSSDIEI--IPDVEVED 216
L+ I E+ F + + A Y AR +++ L VD ++I + I D+ D
Sbjct: 328 ILSGMSIHEARMHFMHVHTLPSPANYMARFSLILSKTKK-LEVDMTEITVMQIDDIHCHD 386
Query: 217 ---------DGITYCFSDGIGKISAELAEIVAKNCGFTIYT-----------------PS 250
+G SDG G IS +LA + C I+ P
Sbjct: 387 QSNNDVLDKNGKPRIHSDGTGYISEDLARM----CPLNIFKGKSMRSNNIQGTCVQEPPL 442
Query: 251 AFQIRY----GGYKGVVAVDPTSSTK-LSLRKSMLK-YKSES-------TSLDILANSKY 297
QIR KG+ ++ + + +R SM+K YK ++ SL+++ S
Sbjct: 443 LIQIRMFNDGSAVKGIFLLNKNLPPQTVQVRPSMIKVYKDKNLSNFSTFNSLEVVTTSNP 502
Query: 298 -QPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNV 356
+ L++ L+ LLS G+ + F + + I A +A + ++ N
Sbjct: 503 PKRAKLSKNLVALLSYGGVPNDFFLDILLNTLEKKKTIFFKVRAAGKAALHYGNMDDKNA 562
Query: 357 LKELLMCGYKPDVEPFLLMMLQTFRASNLLELRT----RTRIFIQNGRAMMGCLDETGTL 412
L +++M G D EP+L L S LL+L ++ I +MG +D TG L
Sbjct: 563 L-QMIMAGIPLD-EPYLKHYL-----SKLLKLEKDDLKAGKLPIDESYYLMGTVDPTGEL 615
Query: 413 ESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGK-VVVAKNPCLHPGDMRVLRAVDVPS 471
+ +V G+ + + V+V +NP LH GD+ +L+A V S
Sbjct: 616 KEDEVS-----------------------GLAKSQDVLVYRNPGLHFGDIHILKATYVKS 652
Query: 472 LHHMVD----CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI---PPLQFPPMDYTP 524
L V V FP KG R +E +G D DGD+YF+ + +L+ P + P + +P
Sbjct: 653 LEQYVGNSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHYKPSE-PWVSSSP 711
Query: 525 APEKVLAR---DMTIEDVEEYFADYIVN-------------DSLGVICNAHVVHAD--LE 566
+ R +++ E +EE + DS I + + D ++
Sbjct: 712 RSKIYTGRQPSELSPEQLEEELFKIFLKTGFSPSSVIGQAADSWLAIMDRFLTLGDENVK 771
Query: 567 PDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGK 626
+ L+L + A+D KTG +P ++V+++P +ME+ +KT ++S ++G
Sbjct: 772 EKAEMKKKMLKLTDIYYDAIDAPKTGTEVNLPLDVKVDLFPHYMER-NKT-FKSTSILGL 829
Query: 627 LYRAV 631
++ V
Sbjct: 830 IFDTV 834
>gi|115435092|ref|NP_001042304.1| Os01g0198000 [Oryza sativa Japonica Group]
gi|56201772|dbj|BAD73222.1| RNA-dependent RNA polymerase -like [Oryza sativa Japonica Group]
gi|56201879|dbj|BAD73329.1| RNA-dependent RNA polymerase -like [Oryza sativa Japonica Group]
gi|113531835|dbj|BAF04218.1| Os01g0198000 [Oryza sativa Japonica Group]
gi|215693837|dbj|BAG89036.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 582
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 103/420 (24%), Positives = 167/420 (39%), Gaps = 63/420 (15%)
Query: 249 PSAFQIR-YGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANS-KYQPCFLNRQL 306
PS +I+ Y GV +V+ K L S +I++ S + F + L
Sbjct: 43 PSMLKIKTYPELSGVQSVNSLDIVSARNAKKSLSGVQSVNSFEIVSTSNRSGRTFTSNNL 102
Query: 307 ITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYK 366
I LL G+ + F + + + + D D A + E++ + +++ G
Sbjct: 103 IALLHYGGVPEEFFMELLQTAIEEADNARFDYAGALNIAFNYADMEDS-MPARMILSG-- 159
Query: 367 PDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRA-------MMGCLDETGTLESGQVFV 419
+ + +++ S L L R I+NG+ +MG D TG L +V V
Sbjct: 160 -------IPLEESYLQSRLDFLSLLERKGIKNGKIPIDDCYYLMGTADPTGKLGPNEVCV 212
Query: 420 QCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVD-- 477
LD G V G V+V K P LHPGD+ VL+A + +V
Sbjct: 213 ---------ILD---------YGQVSGDVLVYKYPGLHPGDIHVLKATYSSDIEKVVGNS 254
Query: 478 --CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMT 535
++FP G+R +E + SD DGD+Y+V + +L+ + P + PA +
Sbjct: 255 KHAILFPTTGQRSLADEMANSDFDGDIYWVSLNPKLLEHFK-PSKPWVPAITPNGTKQKG 313
Query: 536 IEDVEE------YFADYI-------------VNDSLGVICNAHVVHADLEPDKARSNQCL 576
ED E F +++ + L + V D K + L
Sbjct: 314 PEDFNESELERVLFHEFLKTRFAPSYARATAATNWLVYMDRLLTVSLDESEKKLIEKKML 373
Query: 577 ELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAP 636
+L L +A+D K G IP L V+ YP FM++ Y S ++GK+Y D P
Sbjct: 374 KLVDLYYLALDAPKMGNKVNIPRDLMVKQYPHFMDRS--PSYHSSSILGKIYDKAGDPKP 431
>gi|122920829|pdb|2J7N|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
gi|122920830|pdb|2J7N|B Chain B, Structure Of The Rnai Polymerase From Neurospora Crassa
gi|122920831|pdb|2J7O|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
Length = 1022
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 92/358 (25%), Positives = 147/358 (41%), Gaps = 54/358 (15%)
Query: 218 GITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKG--VVAVDPTS-----S 270
G +DG+G++S +A+ + G PSA Q R+G KG V+ VD T
Sbjct: 322 GTGEVMNDGVGRMSRSVAKRIRDVLGLGD-VPSAVQGRFGSAKGMWVIDVDDTGDEDWIE 380
Query: 271 TKLSLRKSMLKY-KSESTSLDILA-NSKYQPCFLNRQLITLLS---------TLGIRDHV 319
T S RK + +L++ + S+ + LN QL+ +L I D +
Sbjct: 381 TYPSQRKWECDFVDKHQRTLEVRSVASELKSAGLNLQLLPVLEDRARDKVKMRQAIGDRL 440
Query: 320 FEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNV------------------LKELL 361
QR+ Q A L P++ + + S T V L L+
Sbjct: 441 INDLQRQFSEQKHA-LNRPVEFRQWVYESYSSRATRVSHGRVPFLAGLPDSQEETLNFLM 499
Query: 362 MCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQC 421
G+ P + +L + + L+++ I + + D G LE +V V
Sbjct: 500 NSGFDPKKQKYLQDIAWDLQKRKCDTLKSKLNIRVGRSAYIYMIADFWGVLEENEVHVGF 559
Query: 422 SASRRRE----FLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVD 477
S+ R E L + C+ V+VA++P P D++ +RAV P LH + D
Sbjct: 560 SSKFRDEEESFTLLSDCD------------VLVARSPAHFPSDIQRVRAVFKPELHSLKD 607
Query: 478 CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMT 535
++F KG P + SG D DGD+ +VCWD E++ M P + L +D T
Sbjct: 608 VIIFSTKGDVPLAKKLSGGDYDGDMAWVCWDPEIVDGFVNAEMPLEPDLSRYLKKDKT 665
>gi|310799490|gb|EFQ34383.1| RNA-directed RNA polymerase [Glomerella graminicola M1.001]
Length = 1348
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 92/357 (25%), Positives = 150/357 (42%), Gaps = 54/357 (15%)
Query: 219 ITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK---LSL 275
I +DGIG++S LA G + PSA Q R G KG+ +D L L
Sbjct: 655 IGKVMNDGIGRMSRSLARKTRDVLGLSD-IPSAIQGRIGPAKGMWLIDIADDKGDLWLEL 713
Query: 276 RKSMLKYK-----SESTSLDILANSK--YQPCFLNRQLITLLSTLGIRDHVF-------- 320
S K+ E +L++ A++K C LN Q + +L I
Sbjct: 714 WPSQRKWNCDFGDPEHRTLEVRAHAKDPGSAC-LNIQFLPVLEDRAINKEAMREVIGKSL 772
Query: 321 ---------EKKQ--------REGVAQLDAILTDPLKAHEALELMSSGENTN--VLKELL 361
E+K R+ ++Q + T L AH + M +N ++ L+
Sbjct: 773 VDELNRQLEEQKDAMKYPLQFRQWISQTSSTRTQRL-AHGHVPYMGGLPESNEEIMNSLI 831
Query: 362 MCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQC 421
G+ P + +L + R S L+ + I + N + +D LE G+V +
Sbjct: 832 DAGFDPRRQRYLQELAWNLRYSLCESLKKKMSIKVSNSAYLFMVVDFWNVLEEGEVHLCF 891
Query: 422 SASRRREFLDNSCNNRSGELGVVEG-KVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVV 480
S+ + + +S ++ G V+VA++P D++ ++AV P LH + D +V
Sbjct: 892 SSKFQTDTFSDS---------ILHGCDVLVARSPAHFVSDIQRVKAVFKPELHTIKDVIV 942
Query: 481 FPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPE--KVLARDMT 535
F AKG P ++ SG D DGD +VCW+ ++ F D P P+ L +D T
Sbjct: 943 FSAKGNVPLADKLSGGDYDGDKAWVCWEPAIVS--NFKNADVPPIPDLSSYLKKDTT 997
>gi|242215346|ref|XP_002473489.1| predicted protein [Postia placenta Mad-698-R]
gi|220727390|gb|EED81310.1| predicted protein [Postia placenta Mad-698-R]
Length = 1162
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 85/318 (26%), Positives = 133/318 (41%), Gaps = 67/318 (21%)
Query: 56 VLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLD--KLYSTVLSPLISSTN 113
V TP+++ GP SN V+R Y D+F+R+ F+DE+L + V P
Sbjct: 348 VTFTPTRMILEGPTRVQSNSVIRKYWPHRDHFIRVDFLDENLSQYRFDREVDGPAF---- 403
Query: 114 EERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMG 173
+++ V L+ G + F+ S Q A R +TA IR ++G
Sbjct: 404 ------LHDHVGKVLKGGFEVAGSPFDYSPDSEMQP--------AVR--MTADRIRGALG 447
Query: 174 DFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAE 233
D +IK AKYAAR+GQ+F S+ ++ + E I ++ ED +DG+G++S
Sbjct: 448 DLSEIKIPAKYAARIGQAFTSTMCSMPISRDQWEEIDEI-WEDRENPRSHTDGVGRLSQA 506
Query: 234 LAEIV-------AKNCGFTIYTPSAFQIRY------------------GGYKGVVAVDPT 268
L + + + G PSA Q R+ GYKGV+AVDP
Sbjct: 507 LMDRIWDIVCNLYPDYGVYGVKPSAVQFRFLGKSFNTIVQKITHSSSPLGYKGVLAVDPQ 566
Query: 269 -SSTKLSLRKSMLKYKS------ESTSLDILANSKYQP------------CFLNRQLITL 309
S ++ R M K+K +LD + Q +L R L+++
Sbjct: 567 LSGERICFRPEMRKFKPLICPYCREGNLDFCPHENDQNLHIADIFDSPKRAYLTRDLVSI 626
Query: 310 LSTLGIRDHVFEKKQREG 327
L G+ F Q+E
Sbjct: 627 LEDRGVHLKAFMDLQQEA 644
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 26/170 (15%)
Query: 492 ECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDS 551
E S + D+Y+V ++L+P + P Y K R DV ++ +Y+ +D+
Sbjct: 849 ERSCASFRCDLYYVFQYYQLLPTIHIAPASYNDI--KPPGRPFDWTDVCDFITEYMHSDA 906
Query: 552 LGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTG--VAATIPSGLRVEIYPDF 609
L H +P +C+ LA+L + AVD+ KTG V G ++ PD+
Sbjct: 907 L---------HGSHDP------RCMRLAELCSDAVDYPKTGRPVDMRTAPGKLMQYNPDW 951
Query: 610 MEKQDKTC------YESQRVIGKLYRAVK-DIAPPTATIKSFTKEVAMQS 652
+D Y+S RV+G LYR +K + P+ + E+++ +
Sbjct: 952 YADEDTNANPLADSYQSDRVLGHLYRGIKLGVIEPSERTPGISPEISLST 1001
>gi|425774605|gb|EKV12907.1| RNA-directed RNA polymerase, putative [Penicillium digitatum Pd1]
gi|425776464|gb|EKV14681.1| RNA-directed RNA polymerase, putative [Penicillium digitatum PHI26]
Length = 1445
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 112/438 (25%), Positives = 162/438 (36%), Gaps = 67/438 (15%)
Query: 212 VEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSST 271
+ + DD +DG IS LA + G T TPS FQ R G KG+ VD S+
Sbjct: 775 LRLRDDPTRTVMNDGCALISRPLANQICDQLGITAATPSCFQGRIAGAKGLWMVDCHQSS 834
Query: 272 KLSLRKSMLKYKSESTSLDILANSK---------------------YQPCFLNRQLITLL 310
+L + + + L I + + P LN QL+ +L
Sbjct: 835 ITTLNDDNIWVQISDSQLKIHPHPQEWVDPVDDEKLTFEVVNWAKPLHPVDLNIQLLAIL 894
Query: 311 STLGIRDHVFEKKQREGVAQLDAILTDPLKAHEAL-------ELMSSGENTNVLKELLMC 363
G K R+GV L + L+++ + +L SGE+ L
Sbjct: 895 EYGGNVKEYIAKLTRDGVQSLYDDFLEVLRSNSPVGCRALLQKLRPSGEDGTGKARRLEQ 954
Query: 364 GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQ--------------NGRAMMGCL-DE 408
D E + F + LR + R FI C+ D
Sbjct: 955 WVTSDAESIIRFSEAGFAPRDFFPLRMKLRKFITWLLERHVEELKIQVPLSTYAYCIADP 1014
Query: 409 TGTLESGQVFVQCSASRRR---EFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLR 465
G L +V S + R +F DN + GV V+V + P P D++ +
Sbjct: 1015 YGVLGPDEVHFGFSNNWRDPQGQFEDNLLD------GV---DVLVGRLPAHLPSDIQRRK 1065
Query: 466 AVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWD--------HELIPPLQF 517
AV L H D +VFP G P SG D DGD ++CWD + +P ++
Sbjct: 1066 AVWKTELRHFKDVIVFPTTGNFPLAGMLSGGDYDGDTPWICWDPIIVERFHNSPMPSHEY 1125
Query: 518 PPMDYTPAPEKV-LARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKA-RSNQC 575
P Y V +A + ED E D+ +N L + V H L D++ S +
Sbjct: 1126 PVEHYGLTKHSVPMASLKSTEDFLESVFDFNLN--LSNLGRCTVEHEKLAYDESINSAKA 1183
Query: 576 LELAKLSTIAVDFSKTGV 593
ELA L VD K GV
Sbjct: 1184 KELACLLGHLVDGRKGGV 1201
>gi|429856861|gb|ELA31752.1| RNA-dependent RNA polymerase [Colletotrichum gloeosporioides Nara
gc5]
Length = 1365
Score = 85.9 bits (211), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 91/357 (25%), Positives = 158/357 (44%), Gaps = 52/357 (14%)
Query: 219 ITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSS-------T 271
I +DGIG++S +LA+ + G PSA Q R+G KG+ +D + T
Sbjct: 674 IGKVMNDGIGRMSPKLAQKIKNVLGLQD-IPSAIQGRFGPAKGMWLIDIQDTGDDLWIET 732
Query: 272 KLSLRKSMLKY-KSESTSLDILANS-KYQPCFLNRQLITLLS-----TLGIR----DHVF 320
S RK Y E +L+I +++ + + LN Q + +L G+R D +
Sbjct: 733 WPSQRKWNCDYLDPEHRTLEIKSHAAEPRSASLNIQFLPVLEDRAVDKPGMRKAIGDSLV 792
Query: 321 EKKQREGVAQLDAILTDPLKAHEALELMSSGE------------------NTNVLKELLM 362
++ RE Q +A + P++ + + S G N + L+
Sbjct: 793 DELNRELEGQKNA-MKYPVQFRQWVNENSIGRKQRLIHNSVPFLAGLPDSNEETMNFLID 851
Query: 363 CGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCS 422
G++P + F+ + R L+ + I I N +D G LE +V + S
Sbjct: 852 GGFEPSKQKFIQDIAWNLRRQKCENLKKKMSIKIPNSAYFYMVIDFWGVLEENEVHLCFS 911
Query: 423 ASRRREFLDNSCNNRSGELGVVEG-KVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVF 481
+ + E +S ++ G V+VA++P D++ ++AV P LH + D +VF
Sbjct: 912 SKFQTESFSDS---------MLHGCDVLVARSPAHFVSDVQRVKAVFKPELHALKDVIVF 962
Query: 482 PAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPE--KVLARDMTI 536
AKG P ++ SG D DGD +VCW+ ++ F + P+P+ + L +D T+
Sbjct: 963 SAKGDIPLADKLSGGDYDGDKAWVCWEPAIV--SNFVNANVPPSPDLSRYLKKDKTL 1017
>gi|388853529|emb|CCF52928.1| uncharacterized protein [Ustilago hordei]
Length = 1363
Score = 85.9 bits (211), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 79/168 (47%), Gaps = 5/168 (2%)
Query: 359 ELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVF 418
E+L+ G+ P P+L +L + + + R I + M D TGTLE G++
Sbjct: 778 EMLLVGFHPKSCPYLAELLVEIADNAMKRIIKRFTIPVPRSAEAMVMPDPTGTLEEGEIQ 837
Query: 419 VQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDC 478
+ S R LD + V EG V+V ++PCL P D+R +RAV P L D
Sbjct: 838 FRFSGDR---LLDPETRLKLNH--VPEGDVLVTRHPCLLPTDIRKVRAVVRPELSTYEDV 892
Query: 479 VVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAP 526
VVF KG+ P + G D DGD V W+ +L+ P Q Y P
Sbjct: 893 VVFSIKGQGPLASLLGGGDHDGDTIRVFWEPKLVEPFQNSDTKYADCP 940
Score = 47.0 bits (110), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 77/176 (43%), Gaps = 27/176 (15%)
Query: 181 VAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGIT---YCFSDGIGKISAELAEI 237
+ KY R+ +S A +D E PDV + D +T +DG G +S +A+
Sbjct: 519 LGKYIQRVQLGLSTSVPASVIDKITYE--PDVFGDPDPVTGKRVEMTDGAGVVSLAVAKD 576
Query: 238 VAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLS---------LRKSMLKYK----- 283
+A++ G+ P AFQ R G KGV ++P L +R S K
Sbjct: 577 IAEHLGYE-SVPCAFQGRVAGSKGVWYIEPRPERSLPGEKPTRWIRVRDSQKKINYADDK 635
Query: 284 ---SESTSLDILANSK-YQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAIL 335
+D+L S+ + P L++Q+I ++ G+ FE Q A+L AI+
Sbjct: 636 PLDPSQLVIDLLGPSRTFAPSTLSKQIIMVIQANGVPTSTFEGMQE---AELRAII 688
>gi|449436040|ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
sativus]
Length = 1056
Score = 85.9 bits (211), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 132/555 (23%), Positives = 237/555 (42%), Gaps = 116/555 (20%)
Query: 252 FQIRYGGY--KGVVAVDPTSSTK-LSLRKSMLKYKSE--------STSLDILANSKY-QP 299
F++ Y G KG ++ + + +R SM+K + + SL+++ S +
Sbjct: 521 FRLFYNGLAVKGTFLLNKQLPPRTIQIRDSMIKVEIDPDLENFETENSLELVGTSNPPKR 580
Query: 300 CFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALEL-MSSGENTNVLK 358
FL+R LI LL+ G+ F + + + + + AL + +++GE + L
Sbjct: 581 TFLSRNLIALLNYGGVPREYFMNILVDALKDVQGVFSS---KRAALRVSINNGEMDDFLV 637
Query: 359 ELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRT----RIFIQNGRAMMGCLDETGTLES 414
++ P E +L +R S LL+ ++ R+ + +MG +D T TLES
Sbjct: 638 ARMILAGIPLDESYL-----QYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTFTLES 692
Query: 415 GQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHH 474
G+V V L N G + GKV+V +NP LH GD+ VL A V L
Sbjct: 693 GEVCV---------ILYN---------GQINGKVLVYRNPGLHFGDIHVLTAKYVEKLVP 734
Query: 475 MVD----CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVL 530
+V + F +KG R +E +G D DGD+Y+V + +L+ + P + P+P +
Sbjct: 735 VVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNSQLLEYFR-PCEPWRPSPSTEV 793
Query: 531 ARDMTIEDVEEYFADYIVNDSLGVICN-------AHVVHAD-----------LEPDKARS 572
+T + +E+ AD + N+ + + A V AD L ++
Sbjct: 794 ---VTNKKPKEFSADELENELFKLFLSTRFQPSYAKSVAADNWLALMDQFLMLGEERKEE 850
Query: 573 NQCLELAKLSTIAVDF------SKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGK 626
C+ L I + + K G +P L+ P FME+ K Y S ++G+
Sbjct: 851 RNCIRAKILQLINIYYDALDAPKKGGKKIEVPKHLKAGTLPHFMER-GKNSYVSTSILGQ 909
Query: 627 LYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDG---FEDYITDA--FKYKTEYDNRLG 681
++ T + +EV ++EV FE+ + + K+K Y+
Sbjct: 910 IF----------DTANMYQEEVP------NIEVQKLPCFEEELPEYIFMKWKFLYELYRK 953
Query: 682 NLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKKNESDSSH 741
+++D + +A+ ++ A++ KK + I++ + L+ R S+
Sbjct: 954 DMVDAMQLDPDAKNIA------AEATIKK--YKEILYGAEELEGSPR-----------SN 994
Query: 742 EDVYAKASAWYHVAY 756
E+VY +A A Y V Y
Sbjct: 995 EEVYQEALAIYQVTY 1009
>gi|238597177|ref|XP_002394255.1| hypothetical protein MPER_05887 [Moniliophthora perniciosa FA553]
gi|215462994|gb|EEB95185.1| hypothetical protein MPER_05887 [Moniliophthora perniciosa FA553]
Length = 279
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 113/217 (52%), Gaps = 24/217 (11%)
Query: 444 VEGKVVVAKNPCLHPGDMRVLRAVDVPS------LHHMVDCVVFPAKGKRPHTNECSGSD 497
+EG+ ++++P HPGD++ + A+ P HM + VV P++GKR ++ G D
Sbjct: 10 LEGRCTISRSPVAHPGDVQTVHAIGKPPTDKLCLFAHMKNVVVLPSRGKRSLASKLGGGD 69
Query: 498 LDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIE--DVEEYFADYIVNDSLGVI 555
LDGD+Y V EL PPL PM Y L D T+E D+ ++ +YI +D LG++
Sbjct: 70 LDGDLYDVITYPELQPPLDNKPMSYEAGETLTLKEDRTVEPRDICDFIVNYINSDVLGLL 129
Query: 556 CNAHVVHADLEPDKARSNQCLELAKLST----IAVDFSKTGVAAT-----IPSGLRVEIY 606
+ +V AD D C +LAKL + AVD+ K G+ +P+ L +
Sbjct: 130 SDRLLVIADQSKDGIYDRDCEKLAKLCSQTTYQAVDYPKNGIPVDLDKDRLPNTL-IRCK 188
Query: 607 PDF-----MEKQDKTCYESQRVIGKLYRAVKDIAPPT 638
PD+ ++ + Y S R +G+++R V+ +A PT
Sbjct: 189 PDWHAAEVVDPRGTDYYMSTRALGEMFRKVR-LAEPT 224
>gi|168064128|ref|XP_001784017.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
gi|162664466|gb|EDQ51185.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
Length = 1042
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 125/554 (22%), Positives = 220/554 (39%), Gaps = 97/554 (17%)
Query: 178 IKNVAKYAARLGQSFGSSREA-LHVDSSDIEIIPDV---EVEDDGITYCFSDGIGKISAE 233
+ ++K+A+RL + S A L+ D + IPD+ +++ G ++G +IS +
Sbjct: 412 VPTMSKFASRLQLALSKSVTANLNWDEIKVRQIPDILSTTLDNSGKFMSHTEGTAEISPD 471
Query: 234 LAEIVA----KNCGFTIYTPSAFQIRYGGYKGVVAVD-PTSSTKLSLRKSMLKYKSESTS 288
+A ++ K G+ + KG V+ ++ R SM+K +++
Sbjct: 472 VARLIPCSVFKGKGYPTLIQGRLFWKGMAIKGTWQVNHQLKGLQILYRPSMVKVTTDAAL 531
Query: 289 LDILANSKYQ-----PCF-------LNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILT 336
D + ++ C+ L++ LI LLS + F + + + L + T
Sbjct: 532 KDFPTINSFEIVNTNTCYKLKEEAKLSQDLIFLLSVNNVPASFFLEHVEKALENLHSFFT 591
Query: 337 DPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFI 396
+ G+ V +EL C DV L M+ N +++ +
Sbjct: 592 ------------TRGQ---VFRELKRCSQDYDVGDQTLRMIMANIPMNNPQMQKNLKKIS 636
Query: 397 QNGRAMM--GCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVE------GKV 448
Q+ A++ GC+ +S + C ++ R N E+ V++ GKV
Sbjct: 637 QDKIALLRKGCVP---LPQSCYLMGTCDPTKERVLKPN-------EVAVIKNGDKVLGKV 686
Query: 449 VVAKNPCLHPGDMRVLRAVDVPSLHHMV----DCVVFPAKGKRPHTNECSGSDLDGDVYF 504
+V KNP H GD+ V AV L+ V + F +G RP +E + SDLDGD Y+
Sbjct: 687 LVYKNPGKHWGDVHVFDAVWDERLNPYVGPANQTIFFSVRGNRPVVDEIANSDLDGDFYW 746
Query: 505 VCWDHELIPPLQFPPMDYTPAP--------EKVLARDMTIEDVEEYFADYIVNDSLGVIC 556
VC++ + +DY + ++ A D++ + + G C
Sbjct: 747 VCFNTQATNSF----LDYFSSKVVFCQLIGVRIAAVDLSFHSKPTLDENRGEDKLPGWEC 802
Query: 557 NA-------HVVHADL-----------EPDKARSNQCLELAKLSTIAVDFSKTGVAATIP 598
+ H D E + S LEL + A+D KTG +
Sbjct: 803 KPMPLSATYWIAHMDRYLTLKYADEYSEELELLSETILELIDIFYRALDADKTGEEVKLR 862
Query: 599 SGLRVEIYPDFMEKQDKTC----YESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYD 654
GL + YP FM KQ++T Y S ++G++Y D+ A + E + +YD
Sbjct: 863 RGLEPKCYPHFMRKQNQTSRRTYYTSTSILGQIY----DMVDKNADRLGYRPEETI-AYD 917
Query: 655 TDMEVDGFEDYITD 668
E F+ YI +
Sbjct: 918 PKFEFGRFDRYIEN 931
>gi|342881586|gb|EGU82475.1| hypothetical protein FOXB_07061 [Fusarium oxysporum Fo5176]
Length = 1387
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 140/323 (43%), Gaps = 46/323 (14%)
Query: 225 DGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTS---------STKLSL 275
DGIG++S LA +A + G + TP AFQ R G KG+ VD T S
Sbjct: 712 DGIGRVSRNLARRIATHMGL-LETPCAFQARIGSAKGMWIVDVEDDGLDNDDWIETYPSQ 770
Query: 276 RKSMLKYKS-ESTSLDILANSK-YQPCFLNRQLITLLSTLG---------IRDHVFEKKQ 324
RK ++ + ++ S+ + LN Q I +L I H+ Q
Sbjct: 771 RKWNCDFEDVHHRTFEVREWSRELRSAALNTQFIPVLEAQAPVPQDMRNVISRHLTNGLQ 830
Query: 325 REGVAQLDAILTDPLK----AHEALELMSSG----------ENTNVLKELLMCGYKPDVE 370
E QL A +T P H + + G +++ +L G+
Sbjct: 831 EEIGGQL-AAMTHPTNLRGFTHRGFDRATLGNVPFVGALPEREEDIISYMLDAGFDATKC 889
Query: 371 PFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFL 430
FL M+ + +L+ + I I +D TGTLE G+V + S+ + +
Sbjct: 890 RFLRDMVWNNQKRQADQLKAKMNIKIPRSTYAFMTVDFTGTLEEGEVQLAFSSKFQADGE 949
Query: 431 DNSCNNRSGELGVVEG-KVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPH 489
++ +++G ++VA+ P D++ ++AV P+L + D +VF +KGK P
Sbjct: 950 SDT---------LLDGIDILVARAPAHFVSDIQKVKAVFRPNLKRLKDVIVFSSKGKSPL 1000
Query: 490 TNECSGSDLDGDVYFVCWDHELI 512
+ SG D DGD+ ++CWD +++
Sbjct: 1001 ADMLSGGDYDGDLAWICWDPDVV 1023
>gi|251765120|sp|Q5QMN4.2|RDR4_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 4; Short=OsRDR4
Length = 1183
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 139/570 (24%), Positives = 216/570 (37%), Gaps = 129/570 (22%)
Query: 164 TAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDI--EIIPD--------VE 213
T R+ R + +AKY R S L VD S++ ++I D E
Sbjct: 495 TIGQARDLFMHIRTVLTLAKYMLRFAL-IVSKTITLDVDLSEVLVKLIDDEPCLDEHGKE 553
Query: 214 VEDDGITYCFSDGIGKISAELAE--------------------IVAKNCGFTIYT--PSA 251
V DG +DG G IS +LA+ +K G T P
Sbjct: 554 VFRDGERLIHTDGTGLISEDLAQKCTYSNSKGKLLEPQDIVDCAASKLMGSNNTTEYPLL 613
Query: 252 FQIR--YGG--YKGVVAVDPTSSTK-LSLRKSMLKYKS--------ESTSLDILA----- 293
Q+R Y G KG V VD + + +R SMLK K+ SLDI++
Sbjct: 614 IQLRLFYNGSAVKGTVLVDKRLPPRTIHIRPSMLKIKTYPELSGVQSVNSLDIVSARNAK 673
Query: 294 -----------------NSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILT 336
+++ F + LI LL G+ + F + + + + D
Sbjct: 674 KSLSGVQSVNSFEIVSTSNRSGRTFTSNNLIALLHYGGVPEEFFMELLQTAIEEADNARF 733
Query: 337 DPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFI 396
D A + E++ + +++ G + + +++ S L L R I
Sbjct: 734 DYAGALNIAFNYADMEDS-MPARMILSG---------IPLEESYLQSRLDFLSLLERKGI 783
Query: 397 QNGRA-------MMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVV 449
+NG+ +MG D TG L +V V LD G V G V+
Sbjct: 784 KNGKIPIDDCYYLMGTADPTGKLGPNEVCV---------ILD---------YGQVSGDVL 825
Query: 450 VAKNPCLHPGDMRVLRAVDVPSLHHMVD----CVVFPAKGKRPHTNECSGSDLDGDVYFV 505
V K P LHPGD+ VL+A + +V ++FP G+R +E + SD DGD+Y+V
Sbjct: 826 VYKYPGLHPGDIHVLKATYSSDIEKVVGNSKHAILFPTTGQRSLADEMANSDFDGDIYWV 885
Query: 506 CWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEE------YFADYI------------ 547
+ +L+ + P + PA + ED E F +++
Sbjct: 886 SLNPKLLEHFK-PSKPWVPAITPNGTKQKGPEDFNESELERVLFHEFLKTRFAPSYARAT 944
Query: 548 -VNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIY 606
+ L + V D K + L+L L +A+D K G IP L V+ Y
Sbjct: 945 AATNWLVYMDRLLTVSLDESEKKLIEKKMLKLVDLYYLALDAPKMGNKVNIPRDLMVKQY 1004
Query: 607 PDFMEKQDKTCYESQRVIGKLYRAVKDIAP 636
P FM++ Y S ++GK+Y D P
Sbjct: 1005 PHFMDRS--PSYHSSSILGKIYDKAGDPKP 1032
>gi|85091735|ref|XP_959047.1| hypothetical protein NCU07534 [Neurospora crassa OR74A]
gi|4803727|emb|CAB42634.1| RNA-dependent RNA polymerase [Neurospora crassa]
gi|28920444|gb|EAA29811.1| predicted protein [Neurospora crassa OR74A]
Length = 1402
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 92/358 (25%), Positives = 147/358 (41%), Gaps = 54/358 (15%)
Query: 218 GITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKG--VVAVDPTS-----S 270
G +DG+G++S +A+ + G PSA Q R+G KG V+ VD T
Sbjct: 702 GTGEVMNDGVGRMSRSVAKRIRDVLGLGD-VPSAVQGRFGSAKGMWVIDVDDTGDEDWIE 760
Query: 271 TKLSLRKSMLKY-KSESTSLDILA-NSKYQPCFLNRQLITLLS---------TLGIRDHV 319
T S RK + +L++ + S+ + LN QL+ +L I D +
Sbjct: 761 TYPSQRKWECDFVDKHQRTLEVRSVASELKSAGLNLQLLPVLEDRARDKVKMRQAIGDRL 820
Query: 320 FEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNV------------------LKELL 361
QR+ Q A L P++ + + S T V L L+
Sbjct: 821 INDLQRQFSEQKHA-LNRPVEFRQWVYESYSSRATRVSHGRVPFLAGLPDSQEETLNFLM 879
Query: 362 MCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQC 421
G+ P + +L + + L+++ I + + D G LE +V V
Sbjct: 880 NSGFDPKKQKYLQDIAWDLQKRKCDTLKSKLNIRVGRSAYIYMIADFWGVLEENEVHVGF 939
Query: 422 SASRRRE----FLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVD 477
S+ R E L + C+ V+VA++P P D++ +RAV P LH + D
Sbjct: 940 SSKFRDEEESFTLLSDCD------------VLVARSPAHFPSDIQRVRAVFKPELHSLKD 987
Query: 478 CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMT 535
++F KG P + SG D DGD+ +VCWD E++ M P + L +D T
Sbjct: 988 VIIFSTKGDVPLAKKLSGGDYDGDMAWVCWDPEIVDGFVNAEMPLEPDLSRYLKKDKT 1045
>gi|296817563|ref|XP_002849118.1| RNA-dependent RNA polymerase [Arthroderma otae CBS 113480]
gi|238839571|gb|EEQ29233.1| RNA-dependent RNA polymerase [Arthroderma otae CBS 113480]
Length = 1255
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 99/394 (25%), Positives = 159/394 (40%), Gaps = 80/394 (20%)
Query: 192 FGSSREALHVDSSDIEIIPD-VEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPS 250
F R L + I + P+ V ++D SDG IS L + + + G + P+
Sbjct: 604 FNRIRLGLSRTTPTITLRPEEVIYDNDPRQEQMSDGCALISKSLGKAITDSLGLS-KVPA 662
Query: 251 AFQIRYGGYKGV--VAVDPTSSTKLSLRK--------------SMLKYKSESTSLDILAN 294
FQ R+ G KG+ VA D LR+ S LK K +L +
Sbjct: 663 CFQGRFAGAKGIWIVARDDQCPQVNGLRQTFETDRGYWMVINASQLKVKPPPCDRGVLLD 722
Query: 295 --------SKY----QPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAH 342
S Y Q +LN Q + +L GI K+ + Q++A K +
Sbjct: 723 KHQMTFDVSSYARTPQSVYLNTQFLMVLQNAGI-----NKEYLSFIIQMEAD-----KFY 772
Query: 343 EA-LELMSSGEN------------TNVLKELLMCGYKPDVEPFLLMMLQT-FRASNLLEL 388
+ LE++ +G++ + +K + G+ PD ++M+L F S L L
Sbjct: 773 DGYLEIIRTGDSAACRDWIKRMGGSTAVKATMSDGFPPDTLGQIIMLLDAGFLPSKLYFL 832
Query: 389 RTRTRIFIQNGRAMMGCL--------------DETGTLESGQVFVQCSASRRREFLDNSC 434
R + + N +G L D G LE G+V + DN
Sbjct: 833 RRLFKFYFDNYLQKLGDLKIKIPKSTYVYCIADPYGVLEEGEVHLAPG--------DNWE 884
Query: 435 NNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECS 494
+ + +L ++ ++VA+ P P D++ RA+ P+L H+ +F KG P + S
Sbjct: 885 D--TPDLDGID--ILVARAPAHLPSDIQKCRAIFHPALRHLKGVAIFSTKGDVPLASLLS 940
Query: 495 GSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEK 528
G D DGD + CW+ L+ P + P P PEK
Sbjct: 941 GGDYDGDEVWACWEPGLVNPFRNQPFQEIPKPEK 974
>gi|345562071|gb|EGX45143.1| hypothetical protein AOL_s00173g244 [Arthrobotrys oligospora ATCC
24927]
Length = 1092
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 95/377 (25%), Positives = 166/377 (44%), Gaps = 54/377 (14%)
Query: 180 NVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVA 239
+ AKY AR+ G SR L V +++I + ++ I + +DG G + + + +A
Sbjct: 368 STAKYNARI--KLGFSRTVL-VPLENVQIKEEKDLVST-IKFPMTDGCGTATFAVLKAIA 423
Query: 240 KNCGFTIYTPSAFQIRYGGYKGVVAVD----PTSSTKLSLRKSMLKYKSESTSLDILANS 295
+ G Y PS FQIR+GG KG++ +D + S +++ RK+ +K+++ L+I
Sbjct: 424 EKMGLD-YVPSYFQIRHGGRKGLILLDVENSDSESLRITYRKTQIKFETRQ-DLNIEVVD 481
Query: 296 KYQPCF---LNRQLITLLSTLGIRDHVF-----EKKQREGVAQLDAILTDP--------- 338
+P + Q +T+L G+ E+ +++G+ +L DP
Sbjct: 482 YARPLKRGKITSQFLTILHNGGVSKETLGNLAKEEIEKDGIWELLERAGDPSFVKNFYQS 541
Query: 339 --LKAHE--------ALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLEL 388
LK A + +S E + +++ G+ E +L L + N L+
Sbjct: 542 GALKKRRDKDGCFKYAGSMPASAEERII--QMVDAGFAVS-ECLVLKNLISGCNKNRLDS 598
Query: 389 RTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKV 448
+ I ++ D L G+VF+Q S+ F+ N L + GKV
Sbjct: 599 WNDLKFTISESTSVKCAPDFKKVLREGEVFLQFSSDG---FVFND-----KLLKFLSGKV 650
Query: 449 VVAKNPCLHPGDMRVLRAVDVPSL----HHMVDCVVFPAKGKRPHTNECSGSDLDGDVYF 504
+V ++P D++ AV P + +VDC+VFP G+ + SG D DGD
Sbjct: 651 LVGRSPAYIASDIQSAIAVMNPEVLEAYGDLVDCIVFPIVGEYSLASRLSGGDYDGDSVL 710
Query: 505 VCWDHELIPPL--QFPP 519
V WD ++ P + PP
Sbjct: 711 VIWDQRVVEPFSSRLPP 727
>gi|350635543|gb|EHA23904.1| hypothetical protein ASPNIDRAFT_40039 [Aspergillus niger ATCC 1015]
Length = 1307
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 107/431 (24%), Positives = 174/431 (40%), Gaps = 72/431 (16%)
Query: 223 FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSS--------TKLS 274
+DG +S LA + + G T YTPSAFQ R G KG+ VD S +
Sbjct: 628 MNDGCALMSRGLANKICDSLGLTGYTPSAFQGRIAGAKGLWMVDKHQSHVSADDNDVWIQ 687
Query: 275 LRKSMLKYK-----------SESTSLDILANSK-YQPCFLNRQLITLLSTLG-IRDHVFE 321
+ S LK K E + +++ SK P LN QL+++L G I++H+ +
Sbjct: 688 ISDSQLKIKPHPCQWDESVDDEKLTFEVVKWSKPLHPVNLNIQLLSILDHGGHIKEHLAD 747
Query: 322 KKQREGVAQLDAILTDPLKAHEAL-------ELMSSGEN-------------------TN 355
R G+ + + L++ A+ ++ SG++
Sbjct: 748 LT-RLGIQSVYQEFANVLQSDSAVLCRSLVQKIRPSGDDGFGPVSQRTWRFENWMSSDAE 806
Query: 356 VLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESG 415
+ L G+ P FL L L RI + D G L+
Sbjct: 807 FIIRLTEAGFCPRSFYFLRKRLGKCLRELLKRHVDELRIEVPLSTYAFCIADPYGVLKED 866
Query: 416 QVFVQCSASRRREFLDNSCNNRSGELG--VVEG-KVVVAKNPCLHPGDMRVLRAVDVPSL 472
+V S N+ + G+ +++G V+V + P P D++ +AV L
Sbjct: 867 EVHFGFS---------NNWRDGKGQFEDILLDGIDVLVGRLPAHLPSDIQRRKAVWKSEL 917
Query: 473 HHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI--------PPLQFPPMDYTP 524
H D +VFP+ G P + SG D DGD ++CWD ++ P ++FP Y
Sbjct: 918 RHFKDVIVFPSVGSIPLAHMLSGGDYDGDTPWICWDQNIVQNFNNSKLPDIEFPAEHYGL 977
Query: 525 APEKVLARDMTIEDVEEYF-ADYIVNDSLGVICNAHVVHADLEPDKA-RSNQCLELAKLS 582
V +D I+ ++E+ + + N +L + V H + D + S++ ELA L
Sbjct: 978 TKYAVGMKD--IQSMDEFLQSSFTFNLTLSNLGRCTVEHEKIAYDDSIDSDKAKELACLL 1035
Query: 583 TIAVDFSKTGV 593
+ VD K GV
Sbjct: 1036 SHLVDGRKAGV 1046
>gi|302411624|ref|XP_003003645.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
gi|261357550|gb|EEY19978.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
Length = 1283
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 146/338 (43%), Gaps = 53/338 (15%)
Query: 223 FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGV--VAVDPTSSTKLSLRKSML 280
+DG+ ++S + A+++A+ G TPSA+Q R+G KGV V DP + +
Sbjct: 658 MNDGVAEMSPKAAKVIAEYLGLAD-TPSAYQGRFGSAKGVWIVGTDPDNKDDFEIETYPS 716
Query: 281 KYKSESTSLD-----ILANSKYQP---CFLNRQLITLLSTLGIRDHVFEKKQR------- 325
+ K E D ++ +P LN Q I +L ++ + + R
Sbjct: 717 QRKWECDFWDEDHRTFEVKTEARPLRAANLNMQFIPVLVNGDVKRGTDKHRMRNAIAGCL 776
Query: 326 -----EGVAQLDAILTDPLKAHEAL-ELMSSGENTNVLKE-------------------L 360
E +A+ + + DP++ + + E G ++ +++ L
Sbjct: 777 RTTLKEELARQRSSMNDPVQFRQWIHENFFQGYRSDRVRDQNIRFLAGLPDNEAERVNML 836
Query: 361 LMCGYKPDVEPFL--LMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVF 418
L G++P FL + FR LL+ + ++ M+ +D G LE G++
Sbjct: 837 LDAGFRPKKLSFLREVSYKMAFRKCELLKSKMNIKVGCSTYAKMV--VDFKGVLEEGEIH 894
Query: 419 VQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDC 478
+ S +F+D L ++ V+VA+ P P D++ +RAV P L H+ D
Sbjct: 895 LGFST----KFMDPDGQFSDTLLHGMD--VLVARAPAHFPSDIQRVRAVFRPELRHLKDV 948
Query: 479 VVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ 516
+VF KG P + SG D DGD +VCWD ++ Q
Sbjct: 949 IVFSIKGDSPLADLLSGGDYDGDQAWVCWDPAIVNSFQ 986
>gi|384496670|gb|EIE87161.1| hypothetical protein RO3G_11872 [Rhizopus delemar RA 99-880]
Length = 1225
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 76/145 (52%), Gaps = 12/145 (8%)
Query: 381 RASNLLE-----LRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCN 435
R SN+ + L+++ +I I+ + D G LE +V++Q S + +D
Sbjct: 717 RISNIFKQLMAPLKSKYKIEIEQSCTVTCIPDPIGILEPDEVYLQLSTRK----VDEKTG 772
Query: 436 NRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSG 495
R+G ++ G VVVA+NPC D++ ++A+D P+L D ++F KG+ ++ G
Sbjct: 773 IRAG---LILGDVVVARNPCGLKSDVQKVKAIDCPALRMYTDLIIFSTKGESSLASKLGG 829
Query: 496 SDLDGDVYFVCWDHELIPPLQFPPM 520
D DGD+ F CWD ++ P P+
Sbjct: 830 GDYDGDLVFCCWDQRIVEPFTASPV 854
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 133/304 (43%), Gaps = 50/304 (16%)
Query: 72 LSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVL-----S 126
L NRVVR + NF ++ V + T+ SP +S++N +R L +
Sbjct: 309 LKNRVVRY--SAVINFKTINQVPK------ITLRSPKVSASNRFFRKFGQDRFLEVVLSA 360
Query: 127 TLRNGIVIGDKKFETLAFSNSQ-------VKDNSMWMFASR-PELTAADIRESMGDFRDI 178
T +VI K + F Q +KDN++ FA+ +L I++ + I
Sbjct: 361 TSSPSMVIKLKDYILKPFLLMQRVFRFLFIKDNALIFFATEGTDLEPISIQQVIDWHMPI 420
Query: 179 -----KNVAKYAARLGQSFGSSREALHVDSSDIEIIPD----VEVEDDGITYCFSDGIGK 229
+++KYA+R+ + SS + + S+IE I D + D + C +DG G
Sbjct: 421 IENWGMSMSKYASRMSLGYSSSIPTIQFEPSEIEYIDDIYSTISTTKDA-SACMTDGCGI 479
Query: 230 IS-AELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP----TSSTKLSLRKSMLKYKS 284
IS A + EI+ C T P A Q R G KGV + P S + +RKS K+K+
Sbjct: 480 ISCAAMREIMG--CQATDRLPCAIQGRIAGAKGVWIIAPDLDFNSGKYIKIRKSQDKFKT 537
Query: 285 -----------ESTSLDILANSK-YQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLD 332
+ D++ NS P LN Q I +L+ G+ VF + E + +L
Sbjct: 538 GLPQADSHLDPHHYTFDLVKNSICIYPSNLNIQFIQVLAAGGVPTKVFVEILGEYLHRLA 597
Query: 333 AILT 336
++T
Sbjct: 598 TVVT 601
>gi|367049126|ref|XP_003654942.1| hypothetical protein THITE_2079458 [Thielavia terrestris NRRL 8126]
gi|347002206|gb|AEO68606.1| hypothetical protein THITE_2079458 [Thielavia terrestris NRRL 8126]
Length = 1373
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 153/357 (42%), Gaps = 61/357 (17%)
Query: 223 FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK---LSLRKSM 279
+DGIG++S +A + G + PSA Q R G KG+ +D + + S
Sbjct: 666 MNDGIGRMSRSVARKIRDALGLSD-IPSAIQGRMGSAKGMWLMDVADAGDDDWIETYPSQ 724
Query: 280 LKYKSEST-----SLDILA-NSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVA---- 329
K+K + +L+I + +++ +P LN Q + +L D +K +
Sbjct: 725 RKWKCDDADALHRTLEIRSVSTELKPAALNLQFLPVLE-----DRAKDKARMRRAIAARL 779
Query: 330 ------QLD---AILTDPLKAHEALELMSSGENTNVLKELLMCGYKP----------DVE 370
Q D A + PL+ + + E TN E + G P +V
Sbjct: 780 MNDLKKQFDSQKAAVERPLQFRQWVN-----ECTNSRSERVRHGQVPFLGGLPENKGEVL 834
Query: 371 PFLLMMLQTFRASNLLELR----------TRTRIFIQNGRA--MMGCLDETGTLESGQVF 418
FLL R + +L RT++ I GR+ M +D G LE +V
Sbjct: 835 SFLLNSGFDRRQKYIQDLAFDLQKQRCEVLRTKLNIHVGRSAYMFMVVDFWGVLEENEVH 894
Query: 419 VQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDC 478
V S+ R + D + + + + V+VA++P P D++ +RAV P LH + D
Sbjct: 895 VGFSSKFRDDVDDTTY------MLLTDCDVLVARSPAHFPSDIQKVRAVFKPQLHALKDV 948
Query: 479 VVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMT 535
+VFPAKG P ++ SG D DGD+ +VCWD +++ M P L +D T
Sbjct: 949 IVFPAKGDIPLADKLSGGDYDGDMAWVCWDPDIVENFTNADMPKEPDLSAYLGKDKT 1005
>gi|358377627|gb|EHK15310.1| hypothetical protein TRIVIDRAFT_122493, partial [Trichoderma virens
Gv29-8]
Length = 1284
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/340 (25%), Positives = 137/340 (40%), Gaps = 48/340 (14%)
Query: 223 FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKY 282
+DGIG+IS LA+ V + G + PS FQ R G KG+ +D S + S R + Y
Sbjct: 589 MNDGIGRISPSLAKKVTEALGLSD-CPSCFQGRLGSAKGMWLID-VDSEEDSERDWVEVY 646
Query: 283 KSEST-----------SLDILA-NSKYQPCFLNRQLITLLSTL-----GIRDHVFEKKQR 325
S+ +L+I S+ + LN+Q I +L +R + E QR
Sbjct: 647 PSQRKWECDYDDPHHRTLEIRNWPSELKSASLNQQFIPVLEARSPQPDAMRRVISEHLQR 706
Query: 326 EGVAQLD---AILTDPLKAHEALELMSSGENTNVLKE------------------LLMCG 364
A L A + +P+ + +N L LL G
Sbjct: 707 ALHADLGEQAAAMKEPMSLRLWIHQSGPSKNDRSLDGSAKFLAGLPDSGADKVAFLLDSG 766
Query: 365 YKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSAS 424
+ +L ++ L+T+ I I + D + TLE G+V + S
Sbjct: 767 FDQRRMKYLKELVWDMCKKKADTLKTKMNITIPCSAYIYMAADFSSTLEEGEVHLSFSTK 826
Query: 425 RRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAK 484
+ E ++ + ++VA+ P P D++ +R V P L + D ++F K
Sbjct: 827 FQAEGFSDTL--------LEHMDILVARAPAHFPSDIQRVRVVSRPELRKLKDVIIFSTK 878
Query: 485 GKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTP 524
G +P + SG D DGD+ +VCWD ++ PM P
Sbjct: 879 GDKPLADMLSGGDYDGDMAWVCWDQNIVKNFDNAPMPDKP 918
>gi|340959153|gb|EGS20334.1| RNA polymerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1441
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 146/329 (44%), Gaps = 40/329 (12%)
Query: 219 ITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSS-------T 271
I +DGIG++S +A + G T PSA Q R G KG+ +D + T
Sbjct: 702 IGKVMNDGIGRMSRSVARKIRDALGLTD-IPSAIQGRMGSAKGMWLMDVADTSDEDWIET 760
Query: 272 KLSLRKSMLKYKSES-TSLDILA-NSKYQPCFLNRQLITLLSTLG-----IRDHVFEKKQ 324
S RK + + +L++ + ++ +P LN Q + +L +R + E+ +
Sbjct: 761 YPSQRKWHCNWNDPAHRTLEVRSVPTELKPAGLNLQFLPILEAQAKDKAQMRYAIGERLK 820
Query: 325 REGVAQLD---AILTDPLKAHEAL--------ELMSSGE----------NTNVLKELLMC 363
++ Q + + L PLK + + E + +G+ L LL
Sbjct: 821 KDLETQFELQKSALNHPLKFRQWVNEDWSSRSERVRNGQVLFLGGLPESKHETLFFLLNS 880
Query: 364 GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA 423
G+ P + +L + + L+T+ I + + +D G LE +V + S+
Sbjct: 881 GFDPKKQKYLQKLAWELQYQRCELLKTKLNIKVGRSAYVYMVVDFWGMLEENEVHLGFSS 940
Query: 424 SRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPA 483
F N+ ++ + + V+VA++P D++ +RAV P LH + D +VFP
Sbjct: 941 ----RFCANTDLDQESFTLLADCDVLVARSPAHFVSDVQKVRAVFKPELHALKDVIVFPL 996
Query: 484 KGKRPHTNECSGSDLDGDVYFVCWDHELI 512
KG ++ SG D DGD+ +VCWD +++
Sbjct: 997 KGNVALADKLSGGDYDGDMAWVCWDPDIV 1025
>gi|238505018|ref|XP_002383738.1| RNA-directed RNA polymerase, putative [Aspergillus flavus NRRL3357]
gi|220689852|gb|EED46202.1| RNA-directed RNA polymerase, putative [Aspergillus flavus NRRL3357]
Length = 1131
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 119/484 (24%), Positives = 190/484 (39%), Gaps = 94/484 (19%)
Query: 180 NVAKYAARLGQ--SFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEI 237
N+ + +L Q S G S+ V +I+P +E+ T +DG +S LA
Sbjct: 414 NIKQANCKLFQRISLGLSKTFATVALKPSQILP---LEEPEGTPVMNDGCALMSRSLASR 470
Query: 238 VAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSST-------KLSLRKSMLKYK------- 283
+ + G T TPSAFQ R G KG+ VD +ST + + S LK K
Sbjct: 471 ICDSLGITGATPSAFQGRIAGAKGLWMVDKHNSTISTESDVWIQISDSQLKIKPHPAGWQ 530
Query: 284 ----SESTSLDILANSK-YQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTD- 337
E + +++ SK LN QL+ +L G H+ E A + A+ D
Sbjct: 531 EPVDEEKLTFEVVKWSKPLHTVDLNTQLLAILEHGG---HIKEYVAGLTRAGIRAVYEDF 587
Query: 338 --------PLKAHEALELMSSGENTNVLKEL-----LMCGYKPDVEPFLLMMLQTFRASN 384
P+ ++ M ++ L + DVE + + F
Sbjct: 588 ATVVQSDSPVLCRSLIQKMKPSAESSSAAMLHKVRRMEEWMADDVEAVVRLTEAGFAPRT 647
Query: 385 LLELRTRTRIFIQNGRAMMGCLDET---------------------GTLESGQVFVQCSA 423
LR R R + ++G LD+ G L+ +V S+
Sbjct: 648 FRPLRKRLR------KCLIGLLDQYVEQLHIEVPLSTYAFCIADPYGVLKEDEVHFGFSS 701
Query: 424 SRRR---EFLDNSCNNRSGELGVVEG-KVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
+ R +F DN +++G V+VA+ P P D++ RAV P L H D +
Sbjct: 702 NWRDPEGQFEDN----------LLDGMDVLVARLPAHVPSDIQRRRAVWKPELRHFKDVI 751
Query: 480 VFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI--------PPLQFPPMDYTPAPEKVLA 531
VFP G P + SG D DGD +VCWD ++ +++P + V
Sbjct: 752 VFPTVGTTPLAHMLSGGDYDGDTTWVCWDQNIVQKFRNSDLSTMEYPAEHFGLEEHNVPM 811
Query: 532 RDMTIEDVEEYF-ADYIVNDSLGVICNAHVVHADLEPDKA-RSNQCLELAKLSTIAVDFS 589
+D I+ +E+ + + N ++ + V H + D++ S ELA L + VD
Sbjct: 812 KD--IDSWDEFLQSTFTFNLTMSNLGRCTVEHEKISYDESIDSPNAKELACLLSHLVDGR 869
Query: 590 KTGV 593
K G
Sbjct: 870 KGGA 873
>gi|391867215|gb|EIT76465.1| hypothetical protein Ao3042_07438 [Aspergillus oryzae 3.042]
Length = 1260
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 117/481 (24%), Positives = 189/481 (39%), Gaps = 88/481 (18%)
Query: 180 NVAKYAARLGQ--SFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEI 237
N+ + +L Q S G S+ V +I+P +E+ T +DG +S LA
Sbjct: 543 NIKQANCKLFQRISLGLSKTFATVALKPSQILP---LEEPEGTPVMNDGCALMSRGLASR 599
Query: 238 VAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSST-------KLSLRKSMLKYK------- 283
+ + G T TPSAFQ R G KG+ VD +ST + + S LK K
Sbjct: 600 ICDSLGITGATPSAFQGRIAGAKGLWMVDKHNSTISTESDVWIQISDSQLKIKPHPAGWQ 659
Query: 284 ----SESTSLDILANSK-YQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQL-----DA 333
E + +++ SK LN QL+ +L G R G+ +
Sbjct: 660 EPVDEEKLTFEVVKWSKPLHTVDLNTQLLAILEHGGQIKEYVAGLTRAGIRAVCEDFATV 719
Query: 334 ILTD-PLKAHEALELMSSGENTNVLKEL-----LMCGYKPDVEPFLLMMLQTFRASNLLE 387
+ +D P+ ++ M ++ L + D E + + F
Sbjct: 720 VQSDSPVLCRSLIQKMKPSAESSSAAMLHKVRRMEEWMADDAEAVVRLTEAGFAPRTFRP 779
Query: 388 LRTRTRIFIQNGRAMMGCLDET---------------------GTLESGQVFVQCSASRR 426
LR R R + ++G LD+ G L+ +V S++ R
Sbjct: 780 LRKRLR------KCLIGLLDQYVEQLHIEVPLSTYAFCIADPYGVLKEDEVHFGFSSNWR 833
Query: 427 R---EFLDNSCNNRSGELGVVEG-KVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFP 482
+F DN +++G V+VA+ P P D++ RAV P L H D +VFP
Sbjct: 834 DPEGQFEDN----------LLDGMDVLVARLPAHVPSDIQRRRAVWKPELRHFKDVIVFP 883
Query: 483 AKGKRPHTNECSGSDLDGDVYFVCWDHELI--------PPLQFPPMDYTPAPEKVLARDM 534
G P + SG D DGD +VCWD ++ +++P + V +D
Sbjct: 884 TVGTTPLAHMLSGGDYDGDTTWVCWDQNIVQKFRNSDLSTMEYPAEHFGLEEHNVPMKD- 942
Query: 535 TIEDVEEYF-ADYIVNDSLGVICNAHVVHADLEPDKA-RSNQCLELAKLSTIAVDFSKTG 592
I+ +E+ + + N ++ + V H + D++ S ELA L + VD K G
Sbjct: 943 -IDSWDEFLQSTFTFNLTMSNLGRCTVEHEKISYDESIDSPNAKELACLLSHLVDGRKGG 1001
Query: 593 V 593
V
Sbjct: 1002 V 1002
>gi|3687226|gb|AAC62124.1| hypothetical protein [Arabidopsis thaliana]
Length = 905
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 138/599 (23%), Positives = 240/599 (40%), Gaps = 129/599 (21%)
Query: 121 YERVLSTLRNGIVIGDKKFETLAF------------SNSQVKDNSMWMFASRPE------ 162
Y + +NGI++G ++++ F S QVK + ++
Sbjct: 273 YSKYKEIAKNGIMVGLRRYQFFVFKDGGKAEKKKRNSTKQVKCYFIRTGSTASSDMENPY 332
Query: 163 -LTAADIRESMGDFRDIKNV---AKYAARLGQSFGSSREALHVDSSDIEI--IPDVEVED 216
L+ I E+ F + + A Y AR +++ L VD ++I + I D+ D
Sbjct: 333 ILSGMSIHEARMHFMHVHTLPSPANYMARFSLILSKTKK-LEVDMTEITVMQIDDIHCHD 391
Query: 217 ---------DGITYCFSDGIGKISAELAEIVAKNC------------GFTIYTPSAF-QI 254
+G SDG G IS +LA + N G + P QI
Sbjct: 392 QSNNDVLDKNGKPRIHSDGTGYISEDLARMCPLNIFKGKSMRSNNIQGTCVQEPPLLIQI 451
Query: 255 RY----GGYKGVVAVDPT-SSTKLSLRKSMLK-YKSES-------TSLDILANSKY-QPC 300
R KG+ ++ + +R SM+K YK ++ SL+++ S +
Sbjct: 452 RMFNDGSAVKGIFLLNKNLPPQTVQVRPSMIKVYKDKNLSNFSTFNSLEVVTTSNPPKRA 511
Query: 301 FLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKEL 360
L++ L+ LLS G+ + F + + I A +A + ++ N L ++
Sbjct: 512 KLSKNLVALLSYGGVPNDFFLDILLNTLEKKKTIFFKVRAAGKAALHYGNMDDKNAL-QM 570
Query: 361 LMCGYKPDVEPFLLMMLQTFRASNLLELRT----RTRIFIQNGRAMMGCLDETGTLESGQ 416
+M G D EP+L L S LL+L ++ I +MG +D TG L+
Sbjct: 571 IMAGIPLD-EPYLKHYL-----SKLLKLEKDDLKAGKLPIDESYYLMGTVDPTGELK--- 621
Query: 417 VFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMV 476
E +V V NP LH GD+ +L+A V SL V
Sbjct: 622 ----------------------------EDEVCVILNPGLHFGDIHILKATYVKSLEQYV 653
Query: 477 D----CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ--FPPMDYTPAPEKVL 530
V FP KG R +E +G D DGD+YF+ + +L+ + P + +P +
Sbjct: 654 GNSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHYKPSEPWVSSSPRSKIYT 713
Query: 531 AR---DMTIEDVEEYFADYIVN-------------DSLGVICNAHVVHAD--LEPDKARS 572
R +++ E +EE + DS I + + D ++
Sbjct: 714 GRQPSELSPEQLEEELFKIFLKTGFSPSSVIGQAADSWLAIMDRFLTLGDENVKEKAEMK 773
Query: 573 NQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAV 631
+ L+L + A+D KTG +P ++V+++P +ME+ +KT ++S ++G ++ V
Sbjct: 774 KKMLKLTDIYYDAIDAPKTGTEVNLPLDVKVDLFPHYMER-NKT-FKSTSILGLIFDTV 830
>gi|255956165|ref|XP_002568835.1| Pc21g18410 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590546|emb|CAP96738.1| Pc21g18410 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1430
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 107/420 (25%), Positives = 169/420 (40%), Gaps = 48/420 (11%)
Query: 212 VEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSST 271
+ + DD +DG +S LA + G T TPS FQ R G KG+ + S +
Sbjct: 777 LRLRDDPTRPVMNDGCALMSRTLANQICDQLGITTATPSCFQGRIAGAKGLWMIQ-ISDS 835
Query: 272 KLSLRKSMLKY----KSESTSLDILANSK-YQPCFLNRQLITLLSTLGIRDHVFEKKQRE 326
+L + ++ E + +++ +K P LN QL+ +L G K R+
Sbjct: 836 QLKIHPHPQEWVGPVDEEKLTFEVVNWAKQLHPVDLNIQLLAILEYGGNVKEYIAKLTRD 895
Query: 327 GVAQLDAILTDPLKAHEAL-------ELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQT 379
GV L + L+++ + +L SGE+ L D E +
Sbjct: 896 GVQSLYDDFLEVLRSNSPVVCRALLQKLRPSGEDGTGKARRLEQWVTNDAESIIHFSEAG 955
Query: 380 FRASNLLELRTRTRIF-------------IQNGRAMMG-CL-DETGTLESGQVFVQCSAS 424
F + LR + R + IQ + C+ D G L +V S +
Sbjct: 956 FAPRDFFPLRMKIRQYLTWLLERNVEELKIQVPLSTYAYCIADPYGVLGPDEVHFGFSNN 1015
Query: 425 RRR---EFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVF 481
R +F DN + GV V+V + P P D++ RAV L H + +VF
Sbjct: 1016 WRDPQGQFEDNLLD------GV---DVLVGRLPAHLPSDIQRRRAVWKSELRHFKNVIVF 1066
Query: 482 PAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPM---DYTPAPEKVLARDMTIED 538
P G+ P SG D DGD ++CWD ++ Q PM +Y+ + + +
Sbjct: 1067 PTTGEFPLAGMLSGGDYDGDTPWICWDPMIVERFQNSPMPTDEYSAEHYGLTKHSVPMAS 1126
Query: 539 VE--EYFADYIVNDSLGV--ICNAHVVHADLEPDKA-RSNQCLELAKLSTIAVDFSKTGV 593
+E E F + + + +L V + V H L D++ S + ELA L VD K GV
Sbjct: 1127 LESTEDFLESVFDFNLNVSNLGRCTVEHEKLAYDESVDSPKAKELACLLGHLVDGRKGGV 1186
>gi|384493387|gb|EIE83878.1| hypothetical protein RO3G_08583 [Rhizopus delemar RA 99-880]
Length = 1222
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 9/115 (7%)
Query: 407 DETGTLESGQVFVQCSASRRREFLDNSCNNRSGEL-GVVEGKVVVAKNPCLHPGDMRVLR 465
D TGTLE +VF+Q S + E R+G G++ G V+V +NPC D++ ++
Sbjct: 747 DPTGTLEPDEVFLQLSTRKVDE--------RTGVCAGLITGDVIVTRNPCGLKSDVQKVK 798
Query: 466 AVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPM 520
AVD P+L D ++F KG ++ G D DGD+ + CWD ++ P + P+
Sbjct: 799 AVDCPALRMYTDLIIFSVKGDTSLASKLGGGDYDGDLIYCCWDQRIVEPFKPSPV 853
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 82/175 (46%), Gaps = 20/175 (11%)
Query: 181 VAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVED-DGITYCFSDGIGKIS-AELAEIV 238
++KY +R+ + SS + + IE I DV + G C +DG G IS A + EI+
Sbjct: 428 MSKYVSRMSLGYSSSIPTIQFEPDQIEYIDDVYSKTAKGSAACMTDGCGIISCAAMKEIM 487
Query: 239 AKNCGFTIYTPSAFQIRYGGYKGVVAVDP----TSSTKLSLRKSMLKYKS---------- 284
C T P A Q R GG KG+ + P S + +RKS K+K+
Sbjct: 488 G--CQTTDELPCAVQGRIGGAKGIWIISPDLDFNSGKYIKIRKSQNKFKTGLPQSNLRLD 545
Query: 285 -ESTSLDILANSK-YQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTD 337
+ D++ NS P FLN Q I +L+ G+ VF +E + ++ ++T+
Sbjct: 546 PHHYTFDLVKNSICVYPSFLNTQFIQVLAAGGVPTEVFNDILKEYIHRIAIVITE 600
>gi|356497593|ref|XP_003517644.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine
max]
Length = 953
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 121/516 (23%), Positives = 216/516 (41%), Gaps = 93/516 (18%)
Query: 273 LSLRKSMLKYKSEST-------SLDILANS-KYQPCFLNRQLITLLSTLGIRDHVFEKKQ 324
+ +R SM+K + + + SL+++ S K + +L++ LI LLS G+ + F
Sbjct: 440 IQVRPSMIKVEKDPSVHMQSINSLEVVTTSNKPKRGYLSKHLIALLSFGGVPNEFFMDLL 499
Query: 325 REGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASN 384
R + + + ++ A A + N E+++CG D EPFL L F
Sbjct: 500 RSNMEDANHVYSNKRSALRASINCGEKDEYNA-AEMILCGIPLD-EPFLKHHLSRFAREE 557
Query: 385 LLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVV 444
+LR ++++ + +MG +D TG L+ QV + S+ +
Sbjct: 558 KKKLRG-GKLYMPDCFYLMGTVDPTGHLKKNQVCIIHENSQ------------------I 598
Query: 445 EGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVD----CVVFPAKGKRPHTNECSGSDLDG 500
G V+V +NP LH GD+ + A V L V + FP G R +E +G D DG
Sbjct: 599 VGDVLVYRNPGLHFGDIHKMDATYVKELESYVGHSKYGIFFPRVGTRSVADEIAGGDFDG 658
Query: 501 DVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYF--------------ADY 546
D Y+V +L+ F D P E + D +++ E+ +
Sbjct: 659 DTYWVSNHPQLLQ--YFRKGD--PWIENSVPLDSSVKKPSEFSPEELEEELFRLFLKTRF 714
Query: 547 IVNDSLGVICNAHVVHADL-----------EPDKARSNQCLELAKLSTIAVDFSKTGVAA 595
+ ++G+ N+ + D E ++ + N L+L + A+D K+G
Sbjct: 715 QPSYAMGMSENSWMALMDRLLTLNNCTNENEKERVKENM-LKLIDIYYEALDAPKSGRKV 773
Query: 596 TIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVK-----DIAPPTATIKSFTKEV-- 648
+P+ L E++P +MEK DK+ + S ++G +Y V+ D+ + F EV
Sbjct: 774 QVPNDLIAELFPHYMEK-DKS-FTSTSILGLIYDEVEIWLENDMVGEIWKLPCFDVEVPP 831
Query: 649 -AMQSYDTDMEVDGFEDYITDAFKYK---------TEYDNRLGNLMDYYGIKTEAEILSG 698
++ + T E + +TDA K E + + ++YG E E G
Sbjct: 832 SCLEKWKTKYE--EYRKDMTDALNLKDKSKSHEEAAEVNRKYKE--EFYGPTLEME---G 884
Query: 699 CIMEMAKSFDKKRDLEAIIFAVKSLKKEAR----AW 730
C+ + F++ + + + LKKE + AW
Sbjct: 885 CLKSIGDIFNEALAVYNVSYEYAMLKKEVKRCGFAW 920
>gi|336470141|gb|EGO58303.1| hypothetical protein NEUTE1DRAFT_82729 [Neurospora tetrasperma FGSC
2508]
gi|350290166|gb|EGZ71380.1| RNA-dependent RNA polymerase [Neurospora tetrasperma FGSC 2509]
Length = 1402
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 146/358 (40%), Gaps = 54/358 (15%)
Query: 218 GITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKG--VVAVDPTS-----S 270
G +DG+G++S +A+ + G PSA Q R+G KG V+ VD T
Sbjct: 702 GTGEVMNDGVGRMSRSVAKRIRDVLGLGD-VPSAVQGRFGSAKGMWVIDVDDTGDEDWIE 760
Query: 271 TKLSLRKSMLKY-KSESTSLDILA-NSKYQPCFLNRQLITLLS---------TLGIRDHV 319
T S RK + +L++ + S+ + LN QL+ +L I D +
Sbjct: 761 TYPSQRKWECDFVDKHQRTLEVRSVASELKSAGLNLQLLPVLEDRARDKVKMRQAIGDRL 820
Query: 320 FEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNV------------------LKELL 361
QR+ Q A L P++ + + S T V L L+
Sbjct: 821 INDLQRQFSEQKHA-LNRPVEFRQWVYESYSSRATRVSHGRVPFLAGLPDSQEETLNFLM 879
Query: 362 MCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQC 421
G+ P + +L + + L+++ I + + D G LE +V V
Sbjct: 880 NSGFDPKKQKYLQDIAWDLQKRKCDTLKSKLNIRVGRSAYIYMIADFWGVLEENEVHVGF 939
Query: 422 SASRRRE----FLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVD 477
S+ R E L + C+ V+VA++P P D++ +RAV P LH + D
Sbjct: 940 SSKFRDEEESFTLLSDCD------------VLVARSPAHFPSDIQRVRAVFKPELHSLKD 987
Query: 478 CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMT 535
++F KG P + SG D DGD+ +VCWD ++ M P + L +D T
Sbjct: 988 VIIFSTKGDVPLAKKLSGGDYDGDMAWVCWDPAIVDGFVNAEMPLEPDLSRYLKKDKT 1045
>gi|317151716|ref|XP_001824860.2| RNA-directed RNA polymerase [Aspergillus oryzae RIB40]
Length = 1291
Score = 82.4 bits (202), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 115/469 (24%), Positives = 188/469 (40%), Gaps = 64/469 (13%)
Query: 180 NVAKYAARLGQ--SFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEI 237
N+ + +L Q S G S+ V +I+P +E+ T +DG +S LA
Sbjct: 574 NIKQANCKLFQRISLGLSKTFATVALKPSQILP---LEEPEGTPVMNDGCALMSRGLASR 630
Query: 238 VAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSST-------KLSLRKSMLKYK------- 283
+ + G T TPSAFQ R G KG+ VD +ST + + S LK K
Sbjct: 631 ICDSLGITGATPSAFQGRIAGAKGLWMVDKHNSTISTESDVWIQISDSQLKIKPHPAGWQ 690
Query: 284 ----SESTSLDILANSK-YQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQL-----DA 333
E + +++ SK LN QL+ +L G R G+ +
Sbjct: 691 EPVDEEKLTFEVVKWSKPLHTVDLNTQLLAILEHGGQIKEYVAGLTRAGIRAVCEDFATV 750
Query: 334 ILTD-PLKAHEALELMSSGENTNVLKEL-----LMCGYKPDVEPFLLMMLQTFRASNLLE 387
+ +D P+ ++ M ++ L + D E + + F
Sbjct: 751 VQSDSPVLCRSLIQKMKPSAESSSAAMLHKVRRMEEWMADDAEAVVRLTEAGFAPRTFRP 810
Query: 388 LRTRTRIFIQNGRAMMGCLDETGTLESGQV----FVQCSASRRREFLDN------SCNNR 437
LR R R + ++G LD+ +V + C A R ++ S N R
Sbjct: 811 LRKRLR------KCLIGLLDQYVEQLHIEVPLSTYAFCIADPYRVLKEDEVHFGFSSNWR 864
Query: 438 SGEL----GVVEG-KVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNE 492
E +++G V+VA+ P P D++ RAV P L H D +VFP G P +
Sbjct: 865 DPEGQFEDNLLDGMDVLVARLPAHVPSDIQRRRAVWKPELRHFKDVIVFPTVGTTPLAHM 924
Query: 493 CSGSDLDGDVYFVCWDHELIPPLQ---FPPMDYTPAPEKVLARDMTIEDVEEY----FAD 545
SG D DGD +VCWD ++ + M+Y + ++ ++D++ + +
Sbjct: 925 LSGGDYDGDTTWVCWDQNIVQKFRNSDLSTMEYPAEHFGLEEHNVPMKDIDSWDEFLQST 984
Query: 546 YIVNDSLGVICNAHVVHADLEPDKA-RSNQCLELAKLSTIAVDFSKTGV 593
+ N ++ + V H + D++ S ELA L + VD K GV
Sbjct: 985 FTFNLTMSNLGRCTVEHEKISYDESIDSPNAKELACLLSHLVDGRKGGV 1033
>gi|405952890|gb|EKC20647.1| Putative RNA-dependent RNA polymerase 2 [Crassostrea gigas]
Length = 266
Score = 82.4 bits (202), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 68/107 (63%), Gaps = 6/107 (5%)
Query: 249 PSAFQIRYGGYKGVVAVDPT---SSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLNRQ 305
PSAFQIR+GG KG+VA DPT + L +RKSM K++S+S +L+IL + +LN+Q
Sbjct: 136 PSAFQIRFGGCKGMVAQDPTLGNDTDILVIRKSMKKFESKSNNLEILDVTGPGRLYLNKQ 195
Query: 306 LITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGE 352
+ITLLS LGI+DHVF Q + + IL L H AL + G+
Sbjct: 196 VITLLSGLGIQDHVFLNLQENMLVDIADIL---LYDHLALPALLEGK 239
>gi|83773600|dbj|BAE63727.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1260
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 117/471 (24%), Positives = 188/471 (39%), Gaps = 68/471 (14%)
Query: 180 NVAKYAARLGQ--SFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEI 237
N+ + +L Q S G S+ V +I+P +E+ T +DG +S LA
Sbjct: 543 NIKQANCKLFQRISLGLSKTFATVALKPSQILP---LEEPEGTPVMNDGCALMSRGLASR 599
Query: 238 VAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSST-------KLSLRKSMLKYK------- 283
+ + G T TPSAFQ R G KG+ VD +ST + + S LK K
Sbjct: 600 ICDSLGITGATPSAFQGRIAGAKGLWMVDKHNSTISTESDVWIQISDSQLKIKPHPAGWQ 659
Query: 284 ----SESTSLDILANSK-YQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQL-----DA 333
E + +++ SK LN QL+ +L G R G+ +
Sbjct: 660 EPVDEEKLTFEVVKWSKPLHTVDLNTQLLAILEHGGQIKEYVAGLTRAGIRAVCEDFATV 719
Query: 334 ILTD-PLKAHEALELMSSGENTNVLKEL-----LMCGYKPDVEPFLLMMLQTFRASNLLE 387
+ +D P+ ++ M ++ L + D E + + F
Sbjct: 720 VQSDSPVLCRSLIQKMKPSAESSSAAMLHKVRRMEEWMADDAEAVVRLTEAGFAPRTFRP 779
Query: 388 LRTRTRIFIQNGRAMMGCLDETGTLESGQV----FVQCSASRRREFLDN------SCNNR 437
LR R R + ++G LD+ +V + C A R ++ S N R
Sbjct: 780 LRKRLR------KCLIGLLDQYVEQLHIEVPLSTYAFCIADPYRVLKEDEVHFGFSSNWR 833
Query: 438 SGEL----GVVEG-KVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNE 492
E +++G V+VA+ P P D++ RAV P L H D +VFP G P +
Sbjct: 834 DPEGQFEDNLLDGMDVLVARLPAHVPSDIQRRRAVWKPELRHFKDVIVFPTVGTTPLAHM 893
Query: 493 CSGSDLDGDVYFVCWDHELI--------PPLQFPPMDYTPAPEKVLARDMTIEDVEEYF- 543
SG D DGD +VCWD ++ +++P + V +D I+ +E+
Sbjct: 894 LSGGDYDGDTTWVCWDQNIVQKFRNSDLSTMEYPAEHFGLEEHNVPMKD--IDSWDEFLQ 951
Query: 544 ADYIVNDSLGVICNAHVVHADLEPDKA-RSNQCLELAKLSTIAVDFSKTGV 593
+ + N ++ + V H + D++ S ELA L + VD K GV
Sbjct: 952 STFTFNLTMSNLGRCTVEHEKISYDESIDSPNAKELACLLSHLVDGRKGGV 1002
>gi|302893516|ref|XP_003045639.1| hypothetical protein NECHADRAFT_39599 [Nectria haematococca mpVI
77-13-4]
gi|256726565|gb|EEU39926.1| hypothetical protein NECHADRAFT_39599 [Nectria haematococca mpVI
77-13-4]
Length = 1363
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 138/325 (42%), Gaps = 46/325 (14%)
Query: 223 FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLS---LRKSM 279
DGIG++S LA VA + G + P AFQ R G KG+ VD +
Sbjct: 686 MGDGIGRMSRSLARKVATHLGL-LEAPCAFQARIGSAKGMWIVDVEDDGLDDDDWIETYP 744
Query: 280 LKYKSESTSLDILANS--------KYQPCFLNRQLITLLSTLGIRD---------HVFEK 322
+ K E LD+ + + +P LN+Q I +L R H+
Sbjct: 745 SQRKWECDYLDVHHRTFEVREWSRELRPAALNQQFIPVLEAQAPRPRLMRDAIAAHLVNG 804
Query: 323 KQREGVAQLDAILTDPLK----AHEALELMSSGE----------NTNVLKELLMCGYKPD 368
E Q+ A + P H + S G + +V+ LL G++
Sbjct: 805 LDEEIGGQM-AAMAHPTNLRGWTHRGFDRSSVGHVPFLGGLPERDEDVISYLLDAGFEAT 863
Query: 369 VEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRRE 428
L ++ + + +L+ + I I +D TGTLE G+V + S+ + +
Sbjct: 864 KCRHLRDLVWSMQKRQADQLKAKMNIKIPRSTYAYMVVDFTGTLEEGEVQLAFSSKFQAD 923
Query: 429 FLDNSCNNRSGELGVVEG-KVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKR 487
++ +++G ++VA+ P D++ ++AV P+L + D +VF +KGK
Sbjct: 924 GESDT---------LLDGIDILVARAPAHFVSDIQKVKAVFRPNLKRLKDVIVFSSKGKS 974
Query: 488 PHTNECSGSDLDGDVYFVCWDHELI 512
P + SG D DGD +VCWD +++
Sbjct: 975 PLADLLSGGDYDGDKAWVCWDPKIV 999
>gi|116208690|ref|XP_001230154.1| hypothetical protein CHGG_03638 [Chaetomium globosum CBS 148.51]
gi|88184235|gb|EAQ91703.1| hypothetical protein CHGG_03638 [Chaetomium globosum CBS 148.51]
Length = 1372
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 144/326 (44%), Gaps = 42/326 (12%)
Query: 222 CFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK---LSLRKS 278
+DGIG++S +A V G + PSA Q R G KG+ +D +S + S
Sbjct: 668 VMNDGIGRMSRGVARKVRDALGLSD-IPSAIQGRMGSAKGMWLMDVGNSGDTDWIETYPS 726
Query: 279 MLKYKSEST-----SLDILA-NSKYQPCFLNRQLITLLS-----------TLGIR----- 316
K+ + T +L++ + S+ +P LN Q + +L +G R
Sbjct: 727 QRKWNCDDTDPYHRTLEVRSVASELKPAGLNLQFLPVLEDRARDKRRMKHAIGNRLTNNL 786
Query: 317 DHVFEKKQ---------REGVAQLDAILTDPLKAHEALELMSSGEN-TNVLKELLMCGYK 366
+ FE ++ R+ V + +K + L E+ + +L LL G+
Sbjct: 787 ELQFENQKTALKRPSQFRQWVNENSNDRGSRVKHGQVPFLGGLPESKSEILHFLLNSGFD 846
Query: 367 PDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRR 426
P + +L + + LRT+ I + + +D G LE +V V S+ R
Sbjct: 847 PKSQKYLQDLAFELQKQKCDILRTKLNIRVGRSAYIYMVIDFWGVLEENEVHVGFSSKFR 906
Query: 427 REFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGK 486
E D S + + V+VA++P D++ +RAV P LH + D +VF AKG
Sbjct: 907 DESDDISYTL------LADCDVLVARSPAHFVSDVQKVRAVFKPELHALKDVIVFSAKGN 960
Query: 487 RPHTNECSGSDLDGDVYFVCWDHELI 512
P ++ SG D DGD+ +VCWD +++
Sbjct: 961 IPLADKLSGGDYDGDMAWVCWDPDIV 986
>gi|452985629|gb|EME85385.1| hypothetical protein MYCFIDRAFT_83458, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 1527
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 12/172 (6%)
Query: 359 ELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCL--DETGTLESGQ 416
++L G P E FL ++T + L + +I + ++G D L G+
Sbjct: 1009 QMLESGLVPSQEAFLASEVRTMVKTVLDTKKKNFKIPLSRSTTLLGVALADPLNCLAPGE 1068
Query: 417 VFVQCSASRRREFLDNSCNNRSGELGVV--EGKVVVAKNPCLHPGDMRVLRAVDVPSLHH 474
+ V F C+ +G + E + ++A+NP + P DM+ ++AV P L H
Sbjct: 1069 IHVN--------FARTFCDKITGMPWSILHEMECLIARNPAMAPWDMQKVKAVFKPELAH 1120
Query: 475 MVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAP 526
+ + V+ AKGKRP G D DGD +++CW+ L+ P + P + P P
Sbjct: 1121 LPNVVILSAKGKRPLAELLQGGDYDGDTFWLCWEPRLVRPFRNHPAPWDPPP 1172
>gi|358369575|dbj|GAA86189.1| RNA-directed RNA polymerase [Aspergillus kawachii IFO 4308]
Length = 1306
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 108/431 (25%), Positives = 168/431 (38%), Gaps = 72/431 (16%)
Query: 223 FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSS-------TKLSL 275
+DG +S LA + + G T YTPSAFQ R G KG+ VD S + +
Sbjct: 627 MNDGCALMSRSLANQICDSLGLTGYTPSAFQGRIAGAKGLWMVDKHRSHVTADDDVWIQI 686
Query: 276 RKSMLKYK-----------SESTSLDILANSK-YQPCFLNRQLITLLSTLG-IRDHVFEK 322
S LK + E + +++ SK P QL+ +L G IR H+ +
Sbjct: 687 SDSQLKIRPHPHEWDGSVDDEKLTFEVVKWSKPLHPVNQTIQLLNILDHGGHIRGHLADL 746
Query: 323 KQREGVAQLDAILTDPLKAHEAL-------ELMSSGEN-------------------TNV 356
R G+ L D L++ A+ ++ SG++
Sbjct: 747 T-RLGIQSLYQEFADVLESDSAVLCRSLVQKIRPSGDDGFGRVSQRTWRFENWMSNDAEF 805
Query: 357 LKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQ 416
+ L G+ P FL L L RI + D G L+ +
Sbjct: 806 IIRLTEAGFCPRSFHFLRKRLGKCLRELLKRHVDELRIEVPLSTYAFCIADPYGVLKEDE 865
Query: 417 VFVQCSASRRREFLDNSCNNRSGELG--VVEG-KVVVAKNPCLHPGDMRVLRAVDVPSLH 473
V S N + G+ +++G V+V + P P D++ AV L
Sbjct: 866 VHFGFS---------NVWRDGKGQFEDILLDGIDVLVGRLPAHLPSDIQRRTAVWKQELR 916
Query: 474 HMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI--------PPLQFPPMDYTPA 525
H D +VFP+ G P + SG D DGD ++CWD ++ P +FPP Y
Sbjct: 917 HFKDVIVFPSVGNIPLAHMLSGGDYDGDTPWICWDQNIVRNFYNSGLPDTEFPPEHYGLT 976
Query: 526 PEKVLARDMTIEDVEEYF-ADYIVNDSLGVICNAHVVHADLEPDKAR--SNQCLELAKLS 582
V +D I+ ++E+ + + N +L + V H + D+ S++ ELA L
Sbjct: 977 KYAVDMKD--IQSMDEFLQSSFTFNLTLSNLGRCTVEHEMIAYDEESIDSDKAKELACLL 1034
Query: 583 TIAVDFSKTGV 593
+ VD K GV
Sbjct: 1035 SHLVDGRKAGV 1045
>gi|358392113|gb|EHK41517.1| hypothetical protein TRIATDRAFT_321718 [Trichoderma atroviride IMI
206040]
Length = 1316
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 93/378 (24%), Positives = 150/378 (39%), Gaps = 55/378 (14%)
Query: 181 VAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGI-TYCFSDGIGKISAELAEIVA 239
V K +RL S + + ++ I I +D G +DGIG+ISA LA+ VA
Sbjct: 574 VTKLFSRLALSLSRTWPTVQLERHQIRI----RTKDLGTGKMVMNDGIGRISASLAKKVA 629
Query: 240 KNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKL-------------SLRKSMLKYKS-E 285
+ G T PS FQ R G KG+ +D S S RK +K
Sbjct: 630 ELLGLTD-CPSCFQGRLGSAKGMWLIDVDSEGDFEEDFEKDWVEIYPSQRKWECDFKDVH 688
Query: 286 STSLDILA-NSKYQPCFLNRQLITLLSTL----GIRDHVFEKKQREGVAQLDAILTDPLK 340
+L+I ++ + LN+Q I +L G+ V + + TD +K
Sbjct: 689 HRTLEIRNWPAELKSASLNQQFIPVLEARSKDSGLMRRVMSSHLQRALHADLGEQTDAMK 748
Query: 341 AHEALELM--SSGENTN--------------------VLKELLMCGYKPDVEPFLLMMLQ 378
+L L SG + N + LL G+ +L +
Sbjct: 749 DTMSLRLWIHQSGPSRNDRLLDGSAEFLAGLPNNSADKVAFLLDSGFDQKRLKYLKDAVL 808
Query: 379 TFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRS 438
L+T+ I + + D + TLE G+V + S + E ++
Sbjct: 809 DIYQKKADTLKTKMNITVPCSAYVYMAADFSSTLEEGEVHLSFSTKFQVEGFSDTL---- 864
Query: 439 GELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDL 498
+ + ++VA+ P P D++ +R V P L + D ++F KG P ++ SG D
Sbjct: 865 ----LEQMDILVARAPAHLPSDIQRVRVVSRPELRRLKDVIIFSTKGSVPLADKLSGGDY 920
Query: 499 DGDVYFVCWDHELIPPLQ 516
DGD+ +VCWD ++ Q
Sbjct: 921 DGDIAWVCWDQSIVQNFQ 938
>gi|238599737|ref|XP_002394960.1| hypothetical protein MPER_05070 [Moniliophthora perniciosa FA553]
gi|215464849|gb|EEB95890.1| hypothetical protein MPER_05070 [Moniliophthora perniciosa FA553]
Length = 346
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 98/200 (49%), Gaps = 44/200 (22%)
Query: 56 VLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEE 115
V TP+++ GP + S+R++R Y D+F+R+ F +ED K ++
Sbjct: 158 VTFTPTRMITEGPYPTQSHRIIRRYKGFEDHFIRVDFCEEDRTKY------------GDD 205
Query: 116 RHTT----IYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPE-----LTAA 166
R + RV + L+ G +G + F+ LA+S S ++ +S+W + + AA
Sbjct: 206 REVDSIPFLKGRVGNILKRGFPLGGRHFQFLAYSGSGLRSHSVWFMSEFHHPLEGLVNAA 265
Query: 167 DIRESMGDFRD--------------------IKNVAKYAARLGQSFGSSREALHVDSSDI 206
IR+S+GDFRD +++ +KY ARLG +F ++R ++ +
Sbjct: 266 KIRDSIGDFRDLRIEEYPEQERRFYQADQDLLRHPSKYGARLGLAFTATRPSVRIRRDQW 325
Query: 207 EIIPDVEVEDDGITYCFSDG 226
+I+PD+E + + F+DG
Sbjct: 326 DIVPDIEGDK---SRLFTDG 342
>gi|224093866|ref|XP_002310026.1| hypothetical protein POPTRDRAFT_562705 [Populus trichocarpa]
gi|222852929|gb|EEE90476.1| hypothetical protein POPTRDRAFT_562705 [Populus trichocarpa]
Length = 406
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 113/246 (45%), Gaps = 34/246 (13%)
Query: 273 LSLRKSMLKYKSE--------STSLDILANS-KYQPCFLNRQLITLLSTLGIRDHVFEKK 323
L +R SM+K +++ SL+I+ S + + FL++ LI LLS G+ + F
Sbjct: 168 LHVRPSMIKVETDPKLSNTFSKNSLEIVGTSCRPKKTFLSKNLIALLSYGGVPEEFFMGI 227
Query: 324 QREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRAS 383
+ IL++ KA + L + N++ ++ CG P EP+L L +
Sbjct: 228 LNNALEDAHGILSNK-KAALRVALNYGDMDDNIVATMIGCGI-PLEEPYLQHHL-SILKK 284
Query: 384 NLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGV 443
+ +I + +MG D TG LES +V + LD G
Sbjct: 285 EEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCI---------ILD---------CGQ 326
Query: 444 VEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVD----CVVFPAKGKRPHTNECSGSDLD 499
V G+V+V +NP LH GD+ +L+A V L V + FP KG R +E SG D D
Sbjct: 327 VSGEVLVYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFD 386
Query: 500 GDVYFV 505
GD++FV
Sbjct: 387 GDMFFV 392
>gi|336268466|ref|XP_003348998.1| hypothetical protein SMAC_02019 [Sordaria macrospora k-hell]
gi|380094257|emb|CCC08474.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1403
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 88/358 (24%), Positives = 142/358 (39%), Gaps = 54/358 (15%)
Query: 218 GITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTS-------S 270
G +DG+G++S +A+ + G PSA Q R+G KG+ +D
Sbjct: 703 GTDEVMNDGVGRMSRSVAKKIRDVLGLGD-VPSAVQGRFGSAKGMWVIDVNDMGDDDWIE 761
Query: 271 TKLSLRK----------SMLKYKSESTSLDILA-NSKYQPCFLNRQLITLLSTLGIRDHV 319
T S RK L+ +S ++ L N + P +R + + I D +
Sbjct: 762 TYPSQRKWECDFVDKHQRTLEVRSVASELKSAGLNLQLLPVLEDRAMDKVKMRQAIGDRL 821
Query: 320 FEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNV------------------LKELL 361
QR+ Q A L P++ + + S T V L L+
Sbjct: 822 VNDLQRQFSEQKHA-LNRPVEFRQWVYESYSTRATRVSHGRVPFLAGLPDSQEETLNYLM 880
Query: 362 MCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQC 421
G+ P + FL + + L+++ I + + D LE +V V
Sbjct: 881 NSGFDPKKQKFLQDIAWDLQKRKCDTLKSKLNIRVGRSAYIYMIADFWDVLEENEVHVGF 940
Query: 422 SASRRRE----FLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVD 477
S+ R E L + C+ V+VA++P P D++ +RAV P LH + D
Sbjct: 941 SSKFRDEEESFTLLSDCD------------VLVARSPAHFPSDIQRVRAVFKPELHMLKD 988
Query: 478 CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMT 535
++F KG P + SG D DGD+ +VCWD E++ M P + L +D T
Sbjct: 989 VIIFSTKGDIPLAKKLSGGDYDGDMAWVCWDPEIVAGFVNAEMPLEPDLSRYLRKDKT 1046
>gi|367029127|ref|XP_003663847.1| hypothetical protein MYCTH_2306054 [Myceliophthora thermophila ATCC
42464]
gi|347011117|gb|AEO58602.1| hypothetical protein MYCTH_2306054 [Myceliophthora thermophila ATCC
42464]
Length = 1364
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 89/353 (25%), Positives = 145/353 (41%), Gaps = 44/353 (12%)
Query: 223 FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTS-------STKLSL 275
+DGIG++S +A + G T PSA Q R G KG+ +D T T S
Sbjct: 668 MNDGIGRMSRSVARKIRDLLGLTD-IPSAVQGRIGSAKGMWLMDVTDHGDADWIETYPSQ 726
Query: 276 RKSMLKYKSES--TSLDIL-ANSKYQPCFLNRQLITLLSTLGI-----RDHVFEKKQREG 327
RK E +L++ S+ +P LN Q + +L + R + + +
Sbjct: 727 RKWNCDDADEPFHRTLEVRKVASELKPASLNLQFLPVLEDRAVDKKAMRCAISNRLLNDL 786
Query: 328 VAQLD---AILTDPLKAHEALELMSS-------------------GENTNVLKELLMCGY 365
Q + L PL+ + + S+ + +L L+ G+
Sbjct: 787 AKQFEDQKTALKRPLQFRQWVHENSNNNRPERVKHGQVPFLGGLPADKNEILALLMNSGF 846
Query: 366 KPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASR 425
P + +L + + LRT+ I + + +D G LE +V V S S+
Sbjct: 847 DPKSQRYLRDLAWELQKQKCDTLRTKLNIKVGRSAYIYMVVDFWGVLEENEVHVGFS-SK 905
Query: 426 RREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKG 485
R+ LD + + V+VA++P D++ +RAV P LH + D +VF KG
Sbjct: 906 FRDELDGVSYTL-----LADCDVLVARSPAHFVSDIQKVRAVFKPELHALKDVIVFSTKG 960
Query: 486 KRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIED 538
P ++ SG D DGD +VCWD E++ + + P L +D T D
Sbjct: 961 DIPLADKLSGGDYDGDFAWVCWDPEIVDNFENAEVPVEPDLSAYLRKDKTTFD 1013
>gi|70997928|ref|XP_753696.1| RNA-directed RNA polymerase [Aspergillus fumigatus Af293]
gi|66851332|gb|EAL91658.1| RNA-directed RNA polymerase, putative [Aspergillus fumigatus Af293]
Length = 1318
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 112/436 (25%), Positives = 172/436 (39%), Gaps = 80/436 (18%)
Query: 222 CFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSST--------KL 273
+DG +S LA + G T TPSAFQ R G KG+ VD +S +
Sbjct: 636 VMNDGCALMSRPLANAICDQLGITGNTPSAFQGRIAGAKGLWMVDRHNSGISGGGDDFWI 695
Query: 274 SLRKSMLKYKS-----------ESTSLDILANSK-YQPCFLNRQLITLLSTLG-IRDHVF 320
+ S LK + E + +++ SK P LN QL+ +L G +R+H+
Sbjct: 696 QISDSQLKIQPHPQAWRGPVDDEKLTFEVVKWSKPLHPVELNTQLLAILEHGGQVREHIA 755
Query: 321 EKKQREGVAQLDAILTDPLKAHEA---------------------------LELMSSGEN 353
E R G+ + L+++ A LE ++ +
Sbjct: 756 ELT-RAGIRAISQDFASVLESNSAALCRSLIQKIKPMADDGLSGINQRMKRLEQWTANDA 814
Query: 354 TNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMG-CL-DETGT 411
+++ L G+ P F + + R L R + I+ + C+ D G
Sbjct: 815 EAIIR-LTEAGFAP--RSFYPLRRRLGRCLRDLLDRYVDELHIEVPLSTYAFCIADPYGV 871
Query: 412 LESGQV---FVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVD 468
L+ +V F R +F DN + GV V+V + P P D++ RAV
Sbjct: 872 LKEDEVHFGFSNNWRDARGQFEDNLLD------GV---DVLVGRLPAHVPSDIQRRRAVW 922
Query: 469 VPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI--------PPLQFPPM 520
L H D +VFP G P + SG D DGD ++CWD ++ P ++PP
Sbjct: 923 KTELRHFKDVIVFPTTGDIPLAHMLSGGDYDGDTPWICWDQNIVQRFQNSDLPTEEYPPE 982
Query: 521 DYTPAPEKVLARDM--TIEDVEEYFADYIVNDSLGVICNAH-VVHADLEPDKARSNQCLE 577
+ V RD+ T E ++ F + +LG H + D D AR+ E
Sbjct: 983 HFGLTKHPVSMRDIQSTDEFLQSAFTFNLTTSNLGRCTVEHEKIAYDESIDSARAK---E 1039
Query: 578 LAKLSTIAVDFSKTGV 593
LA L + VD K GV
Sbjct: 1040 LACLLSHLVDGRKGGV 1055
>gi|242790556|ref|XP_002481575.1| RNA-directed RNA polymerase, putative [Talaromyces stipitatus ATCC
10500]
gi|218718163|gb|EED17583.1| RNA-directed RNA polymerase, putative [Talaromyces stipitatus ATCC
10500]
Length = 1360
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 108/428 (25%), Positives = 174/428 (40%), Gaps = 65/428 (15%)
Query: 223 FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK----LSLRKS 278
+DG +S LA + G TPSAFQ R G KG+ VD + + S
Sbjct: 671 MNDGCALMSRSLARDICTKLGIDGVTPSAFQGRIAGAKGLWMVDRDRGEDERFWIQVSDS 730
Query: 279 MLKYK-----------SESTSLDILANSK-YQPCFLNRQLITLLSTLG-IRDHVFEKKQ- 324
LK K E + +++ SK + +N QL+ +L+ G +R+ V + +
Sbjct: 731 QLKVKPHPRDFFGHVDKEKITFEVVGWSKPLRSSEINTQLLEVLNNRGQVRNRVADIARD 790
Query: 325 --REGVAQLDAILTD---PLKAHEALELMSSGEN----TNVLKELLMCGYKPDVEPFLLM 375
R ++ + ++ PL ++ + E+ TN+ + + ++E +
Sbjct: 791 AIRSIYSEFEIVMEKNSIPLARALIQKIRPNTEDGHSRTNIRR--IDQWLSNNIESIIRF 848
Query: 376 MLQTFRASNLLELRTRTRIFIQNG--------------RAMMGCL-DETGTLESGQVFVQ 420
+ F + LR R RI +++ C+ D G LE +V
Sbjct: 849 LEAGFSPRDFHPLRERLRICLRDTLDRYVTQLHIPIPLSTYAYCIADPYGVLEENEVHFA 908
Query: 421 CSASRRR-EFLDNSCNNRSGELGVVEG-KVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDC 478
S R + D++ +V+G V+V + P P D++ RAV L H D
Sbjct: 909 FSGQWRDCAYFDDA---------MVDGVDVLVGRTPAHCPWDIQRRRAVWKSELRHFKDV 959
Query: 479 VVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPL-QFPPMDYTPAPEKV----LARD 533
+VF KG P + SG D DGD +VCWD ++ P P PE AR
Sbjct: 960 IVFSTKGTTPLASLLSGGDYDGDRTWVCWDSGIVESFTNTTPPAIEPGPEHFGLVKHARP 1019
Query: 534 M----TIED-VEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDF 588
M ++ED ++ F + +LG H A E + S LELA L + VD
Sbjct: 1020 METVSSVEDMLQNTFKFNLATTNLGQCTVEHNKLAYDEKEGISSPLSLELATLLSHLVDS 1079
Query: 589 SKTGVAAT 596
+K+G+ T
Sbjct: 1080 TKSGLQLT 1087
>gi|159126570|gb|EDP51686.1| RNA-directed RNA polymerase, putative [Aspergillus fumigatus A1163]
Length = 1318
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 112/436 (25%), Positives = 173/436 (39%), Gaps = 80/436 (18%)
Query: 222 CFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSST--------KL 273
+DG +S LA + G T TPSAFQ R G KG+ VD +S +
Sbjct: 636 VMNDGCALMSRPLANAICDQLGITGNTPSAFQGRIAGAKGLWMVDRHNSGISGGGDDFWI 695
Query: 274 SLRKSMLKYKS-----------ESTSLDILANSK-YQPCFLNRQLITLLSTLG-IRDHVF 320
+ S LK + E + +++ SK P LN QL+ +L G +R+H+
Sbjct: 696 QISDSQLKIQPHPQAWRGPVDDEKLTFEVVKWSKPLHPVELNTQLLAILEHGGQVREHIA 755
Query: 321 EKKQREGVAQLDAILTDPLKAHEA---------------------------LELMSSGEN 353
E R G+ + L+++ A LE ++ +
Sbjct: 756 ELT-RAGIRAISQDFASVLESNSAALCRSLIQKIKPMADDGLSGINQRMKRLEQWTANDA 814
Query: 354 TNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMG-CL-DETGT 411
+++ L G+ P F + + R L R + I+ + C+ D G
Sbjct: 815 EAIIR-LTEAGFAP--RSFYPLRRRLGRCLRDLLDRYVDELHIEVPLSTYAFCIADPYGV 871
Query: 412 LESGQVFVQCSASRRR---EFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVD 468
L+ +V S + R +F DN + GV V+V + P P D++ RAV
Sbjct: 872 LKEDEVHFGFSNNWRDVRGQFEDNLLD------GV---DVLVGRLPAHVPSDIQRRRAVW 922
Query: 469 VPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI--------PPLQFPPM 520
L H D +VFP G P + SG D DGD ++CWD ++ P ++PP
Sbjct: 923 KTELRHFKDVIVFPTTGDIPLAHMLSGGDYDGDTPWICWDQNIVQRFQNSDLPTEEYPPE 982
Query: 521 DYTPAPEKVLARDM--TIEDVEEYFADYIVNDSLGVICNAH-VVHADLEPDKARSNQCLE 577
+ V RD+ T E ++ F + +LG H + D D AR+ E
Sbjct: 983 HFGLTKHSVSMRDIQSTDEFLQSAFTFNLTTSNLGRCTVEHEKIAYDESIDSARAK---E 1039
Query: 578 LAKLSTIAVDFSKTGV 593
LA L + VD K GV
Sbjct: 1040 LACLLSHLVDGRKGGV 1055
>gi|380489167|emb|CCF36884.1| RNA-directed RNA polymerase [Colletotrichum higginsianum]
Length = 1354
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 89/366 (24%), Positives = 159/366 (43%), Gaps = 52/366 (14%)
Query: 219 ITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSS-------T 271
I +DGIG++S LA V G + PSA Q R+G KG+ D + T
Sbjct: 651 IDMVMNDGIGRMSRSLARKVRDVLGLSD-VPSAIQGRFGPAKGMWLTDISEEDGKLWLET 709
Query: 272 KLSLRKSMLKYK-SESTSLDILA----------NSKYQPCFLNRQLITLLSTLGIRDHVF 320
S RK +K E +L++ + N ++ P +R + L I ++
Sbjct: 710 WPSQRKWDSDFKDPEHRTLEVRSHAMDTKSASLNLQFLPVMEDRAIDKDLMRETIGKNLV 769
Query: 321 EKKQREGVAQLDAILTDPL-------KAHEALELMSSGE----------NTNVLKELLMC 363
++ RE Q +A+ L A + +++G + + L+
Sbjct: 770 DELNREIEEQKNAMKYSLLFRQYVNKGASTRKQRLTNGRIPFLGGLPDSSEERMNFLIDG 829
Query: 364 GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA 423
G++P + +L + + R ++ +L + I + + +D LE G+V + S+
Sbjct: 830 GFEPQSQKYLQDLSWSLRRAHCDKLLKKMSIKVPESAYLFMVIDFWNVLEEGEVHLCFSS 889
Query: 424 SRRREFLDNSCNNRSGELGVVEG-KVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFP 482
+ + +S ++ G V+VA++P D++ ++AV P LH + D +VF
Sbjct: 890 KFQTDTFSDS---------MLHGCDVLVARSPAHFVSDVQRVKAVFKPELHAIKDVIVFS 940
Query: 483 AKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEY 542
AKG P ++ SG D DGD +VCWD ++ + +P+ E+ L +D T
Sbjct: 941 AKGNVPLADKLSGGDYDGDKAWVCWDPAIVLNFKNAETPASPSLERYLRKDKTT------ 994
Query: 543 FADYIV 548
FAD +V
Sbjct: 995 FADLVV 1000
>gi|121713002|ref|XP_001274112.1| RNA-directed RNA polymerase, putative [Aspergillus clavatus NRRL 1]
gi|119402265|gb|EAW12686.1| RNA-directed RNA polymerase, putative [Aspergillus clavatus NRRL 1]
Length = 1313
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 110/437 (25%), Positives = 174/437 (39%), Gaps = 84/437 (19%)
Query: 223 FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVD---------------P 267
+DG +S LA + + G T TPS FQ R G KG+ VD
Sbjct: 635 MNDGCALMSRGLANAICDSLGITGNTPSCFQGRIAGAKGLWMVDRHQSDISVGGDEFWIQ 694
Query: 268 TSSTKLSLRKSMLKYKS----ESTSLDILANSK-YQPCFLNRQLITLLSTLG-IRDHVFE 321
S ++L + ++ E + +++ SK LN QL+ +L G +RD++
Sbjct: 695 VSDSQLKIHPHPQTWREPVDEEKLTFEVVKWSKPLHSVELNTQLLAILEHGGKLRDYI-A 753
Query: 322 KKQREGVAQ--------LDA---------ILTDPLKAHEALELMS---------SGENTN 355
+ R G+ LD+ I L A + L S + +T
Sbjct: 754 QLTRTGIQTVYQDFAKVLDSDSPVLCRSLIQKIKLVADDGSALASQRVKHLEQWTANDTE 813
Query: 356 VLKELLMCGYKP----DVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCL-DETG 410
+ L G+ P + L LQ A + EL + + C+ D G
Sbjct: 814 AIIRLTEAGFAPRSFYPLRKRLGRCLQDVLARYVDELHIKVPL-----STYAFCIADPYG 868
Query: 411 TLESGQVFVQCSASRRR---EFLDNSCNNRSGELGVVEG-KVVVAKNPCLHPGDMRVLRA 466
L+ +V S + R +F DN +++G V+V + P P D++ RA
Sbjct: 869 VLQENEVHFGFSNNWRDAQGQFEDN----------LLDGMDVLVGRLPAHVPSDIQRRRA 918
Query: 467 VDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI--------PPLQFP 518
V P L H D +VFP G P + SG D DGD+ ++CWD ++ P +FP
Sbjct: 919 VWKPELRHFKDVIVFPTAGDIPLAHMLSGGDYDGDMPWICWDQNMVQDFRNSGLPTEEFP 978
Query: 519 PMDYTPAPEKVLARDMTIEDVEEYF-ADYIVNDSLGVICNAHVVHADLEPDKA-RSNQCL 576
P + V M I+ +E+ + + N ++ + V H L D++ S +
Sbjct: 979 PEHFGLTKHSVPM--MQIQSTDEFLQSAFTFNLTMSKLGRCTVEHEKLSYDESIDSARAK 1036
Query: 577 ELAKLSTIAVDFSKTGV 593
ELA L + VD K GV
Sbjct: 1037 ELACLLSHLVDGRKGGV 1053
>gi|408399167|gb|EKJ78292.1| hypothetical protein FPSE_01753 [Fusarium pseudograminearum CS3096]
Length = 1388
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 139/322 (43%), Gaps = 44/322 (13%)
Query: 225 DGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSS---------TKLSL 275
DGI ++S LA V+ + G + TP AFQ R G KG+ VD T S
Sbjct: 710 DGIARMSRGLARRVSTHLGL-LETPCAFQARIGSAKGMWIVDVEDDGLDDDVWIETYPSQ 768
Query: 276 RKSMLKYKS-ESTSLDILANSK-YQPCFLNRQLITLLSTLG---------IRDHVFEKKQ 324
RK K++ + ++ S+ + LN Q I +L I +H+ Q
Sbjct: 769 RKWECKFEDVHHRTFEVREWSRELKSASLNSQFIPVLEAQAPNPNSMRNVIANHLANGLQ 828
Query: 325 REGVAQLDAILTDPLK----AHEALELMSSGE----------NTNVLKELLMCGYKPDVE 370
E QL A +T P H + S G + +++ +L G+
Sbjct: 829 DEIGGQL-AAMTHPTSLRGWTHRGFDRSSLGRVPFVGGLPDHDDDIVSFMLDAGFDATKC 887
Query: 371 PFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFL 430
FL ++ + +L+ + I I +D TGTLE G+V + S+ +
Sbjct: 888 RFLRDLVWNNQKRQAEQLKAKMNIKIPRSAYAFMVVDFTGTLEEGEVQLAFSSKFQ---- 943
Query: 431 DNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHT 490
+ S L + + ++VA+ P D++ +RAV P+L + D +VF +KGK P
Sbjct: 944 ---ADGESDTL-LDDIDILVARAPAHFVSDVQKVRAVFRPNLKRLKDVIVFSSKGKSPLA 999
Query: 491 NECSGSDLDGDVYFVCWDHELI 512
+ SG D DGD +VCWD +++
Sbjct: 1000 DMLSGGDYDGDQAWVCWDPDIV 1021
>gi|342876307|gb|EGU77937.1| hypothetical protein FOXB_11547 [Fusarium oxysporum Fo5176]
Length = 821
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 134/325 (41%), Gaps = 45/325 (13%)
Query: 224 SDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVD----PTSSTKLSLRKSM 279
+DGIG+I L V G + P+A Q R GG KG+ +D P+ + + S
Sbjct: 152 NDGIGRIFHSLLREVRDVMGLD-FLPTAIQARIGGAKGLWMMDLSPYPSDERWIEIYPSQ 210
Query: 280 LKYKSEST-----SLDILANSKYQ-PCFLNRQLITLLSTLGIRDHVF--------EKKQR 325
K+ + +L++++ S Y P LN Q I +L I + EK +R
Sbjct: 211 RKWHCNWSDPAHRTLEVVSVSSYTGPASLNLQFIPILEERAIDRKLMRTTICERIEKHRR 270
Query: 326 EGVAQLDAILTDP---LKAHEALELMSSGENTN---------------VLKELLMCGYKP 367
+ A + P K + G++ + + L G++P
Sbjct: 271 NDLGNAKAAMEIPEVFRKWIHETSFTTFGDSQDGTSWFVGGLPADWPGTMSFLADGGFEP 330
Query: 368 DVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRR 427
FL M+ + ++ T+ I I + + +D G L +V + S +
Sbjct: 331 RRLDFLNTMMFNHQKQRWKQMETKLHIKIAKSTSALMTIDFQGVLAPNEVQLCFSPA--- 387
Query: 428 EFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKR 487
F D +LG + V+V + P P D++ + AV P L H + ++F + G
Sbjct: 388 -FDDG--QQTLDDLGGFD--VLVGRCPAHLPSDIQKVNAVFKPELRHFKNVIIFSSLGDE 442
Query: 488 PHTNECSGSDLDGDVYFVCWDHELI 512
P N+ SG D DGD +VCWD +++
Sbjct: 443 PLANKLSGGDYDGDKAWVCWDADIV 467
>gi|378728492|gb|EHY54951.1| RNA-directed RNA polymerase [Exophiala dermatitidis NIH/UT8656]
Length = 1308
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 132/330 (40%), Gaps = 50/330 (15%)
Query: 223 FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK--------LS 274
+DG +S LA+ + + CG PSA Q R G KG+ VD S +
Sbjct: 582 MNDGCALMSYNLAKNIWQRCGGQGPPPSAVQGRISGAKGLWLVDYHDSFADVSQRGFWIQ 641
Query: 275 LRKSMLKYK----------SESTSLDILANSKYQPCFLNRQLITLLSTLGIRD----HVF 320
+ S LK K S+ T + + + + LN QLIT+L G+ +
Sbjct: 642 VSDSQLKIKPHPRDRSADESQRTFEVLKSAGECKEAHLNIQLITILEDRGVPRAALRKLL 701
Query: 321 EKKQREGVAQLDAILTDPLKAHEALE---LMSSGENTNVL-----------KELLMCGYK 366
E + L + DP ++ L S E T L K LL G+
Sbjct: 702 EDDTKSYFESLKEAMEDPKALRAWMQEHGLASRTEVTRFLGSFPLDRRDQMKYLLESGFD 761
Query: 367 PDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSAS-- 424
P L + F + R I + + D G LE GQVF+ ++
Sbjct: 762 PTECARLKDLAAGFLQEYMTNYVERLWINVPCSTVVFCAPDPLGVLEEGQVFINFTSPVY 821
Query: 425 -RRREFLDNSCNNRSGELGVVEG-KVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFP 482
+ + D V+EG V+VA+NP DM++ +AV LH + ++FP
Sbjct: 822 DPVKGYHDT----------VLEGLDVLVARNPAYLASDMQLCQAVYKHELHLYKNVILFP 871
Query: 483 AKGKRPHTNECSGSDLDGDVYFVCWDHELI 512
KGK+P + SG D DGD V WD +++
Sbjct: 872 VKGKQPLASLLSGGDYDGDTVTVIWDPDIV 901
>gi|326483110|gb|EGE07120.1| RNA-directed RNA polymerase [Trichophyton equinum CBS 127.97]
Length = 1286
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 89/357 (24%), Positives = 146/357 (40%), Gaps = 42/357 (11%)
Query: 192 FGSSREALHVDSSDIEIIPDVEV-EDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPS 250
F R L ++ I + P+ + +DD SDG +S L +A + + P+
Sbjct: 596 FTRIRLGLSRTTATITLRPEEFIYDDDPRQEKMSDGFAMMSRSLGRAIADSICLS-KVPT 654
Query: 251 AFQIRYGGYKGV--VAVDPTSSTKLSLRK------------------------SMLKYKS 284
FQ R G KGV VA D LR + L +
Sbjct: 655 CFQGRIAGAKGVWVVAKDDQDIHVKGLRHFETERGYWLVINASQLKVQPPPCDTSLMFDK 714
Query: 285 ESTSLDILANSKY-QPCFLNRQLITLLSTLGIRDH----VFEKKQREGVAQLDAILTDPL 339
+ D+ + S+ QP LN Q + +L G + K+ + ++ +
Sbjct: 715 HQLTFDVSSYSQPPQPVHLNTQFLMVLQDRGTNKEYILSLIPKEADKFYSEFLLVQNGDS 774
Query: 340 KAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQT-FRASNLLELRTRTRIFIQN 398
A A + G+ ++ + L + P L M L F SNL +R R+F +N
Sbjct: 775 AACRAWVRQNGGDASSQIPALNESTFPPSRTVQLNMFLDAGFLPSNLAFVR---RLFKEN 831
Query: 399 GRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHP 458
+G D LE+ ++ + S + + LD + G + V+VA+ P P
Sbjct: 832 ---FLG--DFVQKLEALKIKIPKSTYKAQIHLDLGDSWEDGTTDLDGIDVLVARAPAHLP 886
Query: 459 GDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPL 515
D++ RAV P+L ++ + +FP KG+ P + SG D DGD +VCWD E++ P
Sbjct: 887 SDIQKCRAVFHPALRYLKNVAIFPTKGEVPLASLLSGGDYDGDEVWVCWDQEIVKPF 943
>gi|340515396|gb|EGR45650.1| predicted protein [Trichoderma reesei QM6a]
Length = 989
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 89/369 (24%), Positives = 156/369 (42%), Gaps = 52/369 (14%)
Query: 181 VAKYAARLGQSFGSSREALHVDSSDIEII-PDVEVEDDGITYCFSDGIGKISAELAEIVA 239
+AK +RL S + + ++ I + D+E E +DGIG+IS LA+ VA
Sbjct: 256 IAKLFSRLALSLSRTWPTVVLEKEQILVRRKDLEREK-----VMNDGIGRISPSLAKKVA 310
Query: 240 KNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK---LSLRKSMLKYKSE-----STSLDI 291
G + PS FQ R G KG+ +D S + + + S K++ + +L+I
Sbjct: 311 DALGLSD-CPSCFQGRLGSAKGMWLIDVDSDDERDWVEIYPSQTKWECDFDDPHHRTLEI 369
Query: 292 LA-NSKYQPCFLNRQLITLLSTL-----GIRDHVFEKKQREGVAQLD---AILTDPLKAH 342
S+ + LN+Q I +L G+R + E +R A L A + +P+
Sbjct: 370 RNWPSELKSASLNQQFIPILEAQSPEPDGMRRVMAEHLERALHADLGEQVAAMKEPMSLR 429
Query: 343 EALELMSSGENTNVLKE------------------LLMCGYKPDVEPFLLMMLQTFRASN 384
+ +N +L LL G+ +L ++
Sbjct: 430 LWIHQSGPSKNDRLLDGSTKFLAGLPDSNADKVAFLLDSGFDQKKMKYLQDIVWDMCKRK 489
Query: 385 LLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVV 444
L+T+ I + + D T TLE +V + S + + ++ ++
Sbjct: 490 ADVLKTKMNITVPCSAYIYMAADFTSTLEEDEVHLSFSTKFQADGFSDT---------LL 540
Query: 445 EG-KVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVY 503
EG ++VA+ P P D++ ++ V P L + D ++F KG P ++ SG D DGD+
Sbjct: 541 EGMDILVARVPAHLPSDIQRVKVVSRPELRKLKDVIIFSTKGGVPLAHKLSGGDYDGDMA 600
Query: 504 FVCWDHELI 512
+VCWD ++
Sbjct: 601 WVCWDQNIV 609
>gi|443894414|dbj|GAC71762.1| RNA-directed RNA polymerase QDE-1 [Pseudozyma antarctica T-34]
Length = 1339
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 110/247 (44%), Gaps = 38/247 (15%)
Query: 308 TLLSTLGI-RDHVFEKKQR--EGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCG 364
T + T+G RD FEK + G+ L+ P +AH+ L++ G
Sbjct: 734 TQMDTVGDDRDFFFEKGRHIWNGMP-----LSKPERAHDMLKI----------------G 772
Query: 365 YKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSAS 424
+ P +L L + + ++ R + I M D TGTLE G++ + S
Sbjct: 773 FHPRSCSYLAGFLVEIADTAMKKVTQRFAVSIARSAEAMVIPDPTGTLEEGEIQFRFSG- 831
Query: 425 RRREFLDNSCN--NRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFP 482
D+ C+ +R V EG V+V ++PCL P D+R +RAV L D VVF
Sbjct: 832 ------DSICDPDSRLALHHVPEGDVLVTRHPCLLPTDIRKVRAVVRSELSRFQDVVVFS 885
Query: 483 AKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAP---EKVLARDMTIEDV 539
KG P + SG D DGD+ V W+ L+ P + + + P +KV R + E V
Sbjct: 886 TKGHTPLASLLSGGDYDGDLIRVFWEPRLVDPFKNADIKFAECPFEMDKVFNR--SEETV 943
Query: 540 EEYFADY 546
E+ A +
Sbjct: 944 SEFVAQH 950
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 85/330 (25%), Positives = 137/330 (41%), Gaps = 52/330 (15%)
Query: 62 KVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERH--TT 119
KV P++ S R R + E N LRL+ +D L + PL T E+ +
Sbjct: 398 KVQLLPPKLGGSCRFARRFGSE--NILRLT-MDRSLAREARRF--PLHPKTREKHQEISD 452
Query: 120 IYERVLSTL----RNGIVIGDKKF----ETLAFSNSQVKDNSMWMFASRPELTAADIRES 171
+ R L L R I D F + S++Q + + +W F AA+
Sbjct: 453 FFGRTLQILGRRFRPFICKDDIIFYLCIGSPGSSSAQPEFDCVWDFVDHHAPFAANGSSQ 512
Query: 172 MGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGIT---YCFSDGIG 228
+G K+ R+ +S A +D+ I + D+ + +T +DG
Sbjct: 513 LG---------KFIQRIQLGLSTSVPASTIDT--ITYVSDLRGDPHPVTGEQVIMTDGAA 561
Query: 229 KISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLS---------LRKSM 279
+S +A VA+ T PSA Q R G KGV +DP + + L +RKS
Sbjct: 562 TMSLAVARDVAQRLSLT-SVPSAIQARVAGAKGVWYLDPNAQSWLPGEEPKRWIHIRKSQ 620
Query: 280 --LKYKSESTS------LDILANSK-YQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQ 330
++Y + LD+L S+ P L++Q+I +L + G+ F Q+ A+
Sbjct: 621 NKIEYPRDEPRDLSQQVLDLLTASRTTSPSSLSKQIILVLHSNGVPTETFAALQQ---AE 677
Query: 331 LDAILTDPLKAHEALELMSSGENTNVLKEL 360
L AI TD + E +L+ S V+ +L
Sbjct: 678 LRAI-TDSISNWEGPDLLVSKALAKVVDDL 706
>gi|326475512|gb|EGD99521.1| hypothetical protein TESG_06788 [Trichophyton tonsurans CBS 112818]
Length = 1298
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 90/372 (24%), Positives = 152/372 (40%), Gaps = 60/372 (16%)
Query: 192 FGSSREALHVDSSDIEIIPDVEV-EDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPS 250
F R L ++ I + P+ + +DD SDG +S L +A + + P+
Sbjct: 596 FTRIRLGLSRTTATITLRPEEFIYDDDPRQEKMSDGFAMMSRSLGRAIADSICLS-KVPT 654
Query: 251 AFQIRYGGYKGVVAV---------------DPTSSTKLSLRKSMLK-----------YKS 284
FQ R G KGV V + L + S LK +
Sbjct: 655 CFQGRIAGAKGVWVVAKDDQDIHVKGLRHFETERGYWLVINASQLKVQPPPCDTSLMFDK 714
Query: 285 ESTSLDILANSKY-QPCFLNRQLITLLSTLGI-RDHVFEKKQREG---VAQLDAILTDPL 339
+ D+ + S+ QP LN Q + +L G ++++ E ++ +
Sbjct: 715 HQLTFDVSSYSQPPQPVHLNTQFLMVLQDRGTNKEYILSLIPEEADKFYSEFLLVQNGDS 774
Query: 340 KAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQT-FRASNLLELRTRTR----- 393
A A + G+ ++ + L + P L M L F SNL +R +
Sbjct: 775 AACRAWVRQNGGDASSQIPALNESTFPPSRTVQLNMFLDAGFLPSNLAFVRRLFKENFLG 834
Query: 394 IFIQNGRAM---------MGCL-DETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGV 443
+F+Q A+ + C+ D G LE GQ+ + L +S + + +L
Sbjct: 835 VFVQKLEALKIKIPKSTYVYCIPDPYGVLEEGQIHLD---------LGDSWEDGTTDLDG 885
Query: 444 VEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVY 503
++ V+VA+ P P D++ RAV P+L ++ + +FP KG+ P + SG D DGD
Sbjct: 886 ID--VLVARAPAHLPSDIQKCRAVFHPALRYLKNVAIFPTKGEVPLASLLSGGDYDGDEV 943
Query: 504 FVCWDHELIPPL 515
+VCWD E++ P
Sbjct: 944 WVCWDQEIVKPF 955
>gi|242216295|ref|XP_002473956.1| predicted protein [Postia placenta Mad-698-R]
gi|220726900|gb|EED80835.1| predicted protein [Postia placenta Mad-698-R]
Length = 1264
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 86/374 (22%), Positives = 147/374 (39%), Gaps = 80/374 (21%)
Query: 223 FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAV-----DPTSSTKLSLRK 277
F+DG G ++ + + G++ P+ Q R+ G KG+ A+ +P + ++ +R
Sbjct: 585 FTDGCGYMNGAALTAIGRLIGYS-ERPTVVQGRFAGSKGLWALHPEDQEPNALPRMWIRS 643
Query: 278 SMLKYKSESTSL-------DILANSKYQ-PCFLNRQLITLLSTLGIRDHVFEKKQREG-- 327
S K K L D++A + P L+ I LS G+ D F K ++G
Sbjct: 644 SQQKIKHHDEKLGPAQLTFDLVAPPRITIPARLSMYTIMNLSHNGVPDETFIKLMQDGLK 703
Query: 328 ---------------------VAQLDAILTDPLKAHEA---------------------- 344
V Q+ + L+ A
Sbjct: 704 KEVEALTTWDGPHAMVLLWHAVNQVGHVTLSKLRQQAAGGARILGFGRAQDRDDWEDDDV 763
Query: 345 --------LELMS---SGENTNV---LKELLMCGYKPDVEPFLLMMLQTFRASNLLELRT 390
LE+ S GE T+V + ELL G++P P L L+ A + +
Sbjct: 764 DDGLEDETLEVGSLEYEGEPTSVSAAVLELLQAGFQPLKLPLLYEKLRKVVADRIEDYIR 823
Query: 391 RTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVV 450
+I + D G LE GQ+ + + + + +++ +V G V++
Sbjct: 824 NYKITVPRSAEAFIIPDPYGVLEEGQIHFKSTQNLKDPLEESNPT-------IVTGDVLI 876
Query: 451 AKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHE 510
+NP P D+R ++AV P L V+ +V P KG R N +G D+DGDV +D +
Sbjct: 877 YRNPTRVPSDVRKVKAVSHPKLDKYVNVIVLPVKGSRSLANILAGGDVDGDVCTCIFDPD 936
Query: 511 LIPPLQFPPMDYTP 524
L+ + P++ P
Sbjct: 937 LVDSFENSPINDPP 950
>gi|320587947|gb|EFX00422.1| RNA-dependent RNA polymerase [Grosmannia clavigera kw1407]
Length = 1358
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 143/332 (43%), Gaps = 44/332 (13%)
Query: 222 CFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK---LSLRKS 278
+DGIG++S +A V G + P+A Q R G KG+ +DPT + + S
Sbjct: 632 VMNDGIGRMSLSVARKVRFELGLSDL-PAAVQGRLGCAKGMWILDPTDTGGEDWIETYPS 690
Query: 279 MLKYKSESTSLDILA------NSKYQPCFLNRQLITLLSTLGI----------------- 315
K+K + D S + LN+QL+ +L I
Sbjct: 691 QRKWKCDFVDPDHRTLEVRNYASAVRSAGLNQQLLPVLEDRAIDKSRMRTVIGDILRGNL 750
Query: 316 -RDHVFEKKQRE------GVAQLDAILTDPLKAHEALELMSS--GENTNVLKELLMCGYK 366
RD ++ E Q ++ D AH + + ++ V++ LL G+
Sbjct: 751 YRDLATQRTALEHPLLFSAWVQENSRSRDERSAHCQVRFLGGLPDSDSEVVQFLLSGGFD 810
Query: 367 PDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRR 426
P V+ + + + + +L+ + + + + +D G LE G+V V C +S+
Sbjct: 811 PRVQKMIWDVAYKIQKAKCEKLKEKLNVRVGRTAYLHMVVDFLGVLEEGEVQV-CFSSKF 869
Query: 427 REFLDNSCNNRSGELG------VVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVV 480
+ D+ + R G+ G +V V+VA++P D++ +RAV L + D V+
Sbjct: 870 QVDADSEPDER-GDDGSFSDSLLVGTDVLVARSPAHFASDVQRVRAVFRKELCVLKDVVI 928
Query: 481 FPAKGKRPHTNECSGSDLDGDVYFVCWDHELI 512
F KG P ++ SG D DGD+ +VCWD ++
Sbjct: 929 FSRKGDSPLADKLSGGDYDGDMAWVCWDGRIV 960
>gi|443921571|gb|ELU41160.1| RdRP domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 1096
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/442 (23%), Positives = 175/442 (39%), Gaps = 103/442 (23%)
Query: 162 ELTAADIRESMGDFRDIKN---------VAKYAARLGQSFGSSREALHVDSSDIEIIPD- 211
EL R S+ DF + N + K+++R F +SR L S+I +P+
Sbjct: 384 ELVGDQFRRSLRDFIEWHNPLYANPYQTLNKWSSRFALGFSTSRPGLMFAPSEIYYLPET 443
Query: 212 VEVEDDGITYCFSDGIGKI-SAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPT-- 268
V + +DG G I +A + ++ A+ T P + Q R+GG KG+ + P
Sbjct: 444 VAPGKSSNSAIMTDGAGFINTAAMNQLTAQMKWST--APVSVQARFGGSKGLFILHPNDR 501
Query: 269 ---SSTKLSLRKSMLKYK---------SESTSLDILA-NSKYQPCFLNRQLITLLSTLGI 315
+ ++ +R S +K K + LD+L N+ + Q+I LS G+
Sbjct: 502 LLDNPPRIYIRPSQVKVKLHPDPRRWCASHRVLDVLTRNTMAVGTQVTDQVIINLSHNGV 561
Query: 316 RDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCG----------- 364
+ + R + A L +K L+L + + ++EL++ G
Sbjct: 562 PTTILDSMTRTYIE--SASLIPYVKEGRFLQLWETIFTRSKVQELILKGLTPESMARAQG 619
Query: 365 ----------------YKPD--------VEPFLLMMLQT------FRASNLLELRTRTRI 394
Y+PD E L +LQ+ N +E + +
Sbjct: 620 FKSIEKGQDLLDAKFTYQPDPYSGHPPSFETQALGLLQSGFDLKFTPLFNRIESIQKMIL 679
Query: 395 FIQNGRAMM-----GCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVV 449
F +G+ + G +D G L+ G+VF C R DNS + + V G V+
Sbjct: 680 FGMDGKVLCQLVLNGLVDPLGILDVGEVF--CGFGR--PVRDNSGTD----ISTVLGPVL 731
Query: 450 VAKNPCLHPGDMRVLR-----------------AVDVPSLHHM--VDCVVFPAKGKRPHT 490
V++NPC+ P DMR + AV+ P L D +VF KG+R
Sbjct: 732 VSRNPCILPSDMRKVSTEGICGEIRAYSCSQVIAVECPELWAAGYTDVIVFSVKGERSLA 791
Query: 491 NECSGSDLDGDVYFVCWDHELI 512
+ +G D DGD + W+ L+
Sbjct: 792 SMLAGGDYDGDTAILIWEEALV 813
>gi|414588061|tpg|DAA38632.1| TPA: hypothetical protein ZEAMMB73_690745 [Zea mays]
Length = 462
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 132/297 (44%), Gaps = 55/297 (18%)
Query: 367 PDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRR 426
P EP+LL L +F A +++ ++ I +MG D TGTL+ +V V
Sbjct: 45 PLEEPYLLSRL-SFMAKQEMKVFREGKLPIDECYYLMGTTDPTGTLKPNEVCV------- 96
Query: 427 REFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLH-----HMVDCVVF 481
LD+ G G V+V K+P LH GD+ +L A + L + + ++F
Sbjct: 97 --ILDS---------GQYSGDVLVFKHPGLHFGDIHILTARQIDGLEKNFIGYSKNAILF 145
Query: 482 PAKGKRPHTNECSGSDLDGDVYFVCWDHELI--------PPLQFPPMDYTP--------A 525
P G+R +E + SD DGD ++V ++ L+ P ++ + T
Sbjct: 146 PTSGQRSLADEMANSDFDGDEFWVSRNNMLLKTFEKRSEPWVELLKLKETQHRLSKPGDL 205
Query: 526 PEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHAD------LEPDKARS--NQCLE 577
E +L R + E + F I N + G+ + + H D ++ D+ +S ++
Sbjct: 206 NELILERVLFNECLTTMF---IPNYTKGLAPDCWLAHMDRLLTEGVDQDEKKSIVENMIK 262
Query: 578 LAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDI 634
L L A+D G + LRV+ YP FMEK+ Y S ++G++Y ++I
Sbjct: 263 LVDLYYAALD----GHKVDVDRHLRVKAYPHFMEKKGFESYHSSSILGRIYDETEEI 315
>gi|297832164|ref|XP_002883964.1| hypothetical protein ARALYDRAFT_319567 [Arabidopsis lyrata subsp.
lyrata]
gi|297329804|gb|EFH60223.1| hypothetical protein ARALYDRAFT_319567 [Arabidopsis lyrata subsp.
lyrata]
Length = 893
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 137/621 (22%), Positives = 246/621 (39%), Gaps = 136/621 (21%)
Query: 121 YERVLSTLRNGIVIGDKKFETLAF------------SNSQVK------DNSMWMFASRPE 162
Y + +NGI++G ++++ F S QVK D++ P
Sbjct: 263 YSKHKEIAKNGIMVGLRRYQIFVFKDGGKAEKKKRNSTKQVKCYFIRMDSTASSDMENPY 322
Query: 163 LTAA-DIRESMGDFRDIKNV---AKYAARLGQSFGSSREALHVDSSDIEI--IPDVEVED 216
+ A I E+ F + + A Y AR +++ L VD + I + I D+ D
Sbjct: 323 ILAGMSIHEARMHFMHVHTLPSPANYMARFSLILSKTKK-LEVDMTGITVKQIDDIHCHD 381
Query: 217 ---------DGITYCFSDGIGKISAELAE----------------IVAKNCGFTIYTPSA 251
+G SDG G IS +LA I K CG P
Sbjct: 382 QSNNDVLDKNGKPRIHSDGTGYISEDLARMCPVNIFKGKNIKSDIIQGKTCGQE--PPLL 439
Query: 252 FQIRY----GGYKGVVAVDPTSSTK-LSLRKSMLK-YKSES-------TSLDILANSKY- 297
QIR KG+ ++ + + +R SM+K YK ++ SL+++ S
Sbjct: 440 IQIRMFNDGSAVKGIFLLNKNLPPRTVQVRPSMIKVYKDKNLSNFSTFNSLEVVTTSNPP 499
Query: 298 QPCFLNRQLITLLSTLGIRDHVFE-------KKQREGVAQLDAILTDPLKAHEALELMS- 349
+ L++ L+ LLS G+ + F +K+ ++ A +++H +S
Sbjct: 500 KRAKLSKNLVALLSYGGVPNDFFLDILLNTLEKKNTVFFKIRAAGKGSMRSHMMALFLSL 559
Query: 350 ----------SGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNG 399
+ ++ N L +++M G D EP+L L +L+ R+ I
Sbjct: 560 FVFCSCTSLRNMDDKNAL-QMIMAGIPLD-EPYLKHHLSLLLKIKKDDLKA-GRLPIDES 616
Query: 400 RAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPG 459
+MG +D TG L+ E +V V NP LH G
Sbjct: 617 YYLMGTVDPTGELK-------------------------------EDEVCVILNPGLHFG 645
Query: 460 DMRVLRAVDVPSLHHMVD----CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPL 515
D+ +L+A V +L V V FP KG R +E +G D DGD+YF+ + +L+
Sbjct: 646 DIHILQATYVKTLEQYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHY 705
Query: 516 Q-FPPMDYTPAPEKVLA----RDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKA 570
+ P + P K+ +++ E +EE + + ++V+ +
Sbjct: 706 KPSEPWVSSSPPSKIYTGRKPSELSPEQLEEELFNMFLKTGF---SPSNVIGQAADSWLG 762
Query: 571 RSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRA 630
++ L L + A+D KTG +P ++ +++P +ME+ ++S ++G ++
Sbjct: 763 IMDRFLTLGDEN--AIDAPKTGTEVNLPFDVKADVFPHYMERN--KIFKSISILGLIFDT 818
Query: 631 V--KDIAPPTATIKSFTKEVA 649
V + PT + + E++
Sbjct: 819 VDSHNAEDPTPSALGYLSEIS 839
>gi|409079756|gb|EKM80117.1| hypothetical protein AGABI1DRAFT_127795 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1114
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 106/255 (41%), Gaps = 31/255 (12%)
Query: 359 ELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVF 418
E L G+ P P L + S + I + D +G LES +VF
Sbjct: 631 EFLDSGFHPQTCPVLREKMHKVVRSAISRAVENYTIELPFSAGAWIIPDPSGCLESNEVF 690
Query: 419 VQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDC 478
QCS R LD + E ++ G V++ ++PC P D++ +A+DVP LH D
Sbjct: 691 FQCS--RSLPALDGT------ETHIITGDVLITRDPCRLPTDVQKWKAIDVPELHQYKDV 742
Query: 479 VVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI-------PPLQFPPMDYTPAPE---- 527
++ +G R + +G D DGD + W EL+ P PP++ E
Sbjct: 743 IILSVQGPRRAADWLAGGDYDGDKAKLIWQPELVQDFVNAHPSFADPPLNLDSKFEIENK 802
Query: 528 ---------KVLARDMTIEDVEEYFADYIVNDSL-GVICNAHVVHADLEPDKARSNQCLE 577
+ + D I +V++Y + + +L G N H V + + +S +
Sbjct: 803 QVHEFLAEIEGCSEDNKINEVQKYLLGTLKDFTLVGKYSNFHEV--SVYTNGYKSKETKL 860
Query: 578 LAKLSTIAVDFSKTG 592
LA + T +D KTG
Sbjct: 861 LAYMFTTILDGRKTG 875
>gi|119183445|ref|XP_001242762.1| hypothetical protein CIMG_06658 [Coccidioides immitis RS]
gi|392865671|gb|EAS31478.2| hypothetical protein CIMG_06658 [Coccidioides immitis RS]
Length = 1372
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 87/356 (24%), Positives = 133/356 (37%), Gaps = 49/356 (13%)
Query: 211 DVEVEDDGITYC----FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVD 266
D+ +ED G SDG +S LA + G PS FQ R G KG+ VD
Sbjct: 687 DIPLEDRGNMKSSQPDMSDGCALMSVSLANRIKDCLGLKEENPSCFQGRIAGAKGIWMVD 746
Query: 267 PTS-----STKLSLRKSMLKYKSEST-----------SLDILANSK-YQPCFLNRQLITL 309
+ + + S LK K + + ++++ SK +P LN QL+ +
Sbjct: 747 GRNIAFKGEECIQISGSQLKTKPHPSDCRMMLDDHQLTFEVVSWSKELRPVNLNVQLLMV 806
Query: 310 LSTLGIRDHVFEKKQR----EGVAQLDAILTDPLKAHEALELMS-------------SGE 352
L G++ + R + I+T+ + + ++ E
Sbjct: 807 LQHGGVQTDRLKNLVRCEMNTWYQEFKGIITNEIASRAWVQKQGLYEKRKTRRIDDFPTE 866
Query: 353 NTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTL 412
N LL G+ P +L+ L+TF L + +I I D L
Sbjct: 867 NVEQAILLLDSGFHPLKSVYLMNRLKTFLDDYCARLDS-LKIRIPESTYAYCIADPYNVL 925
Query: 413 ESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSL 472
+V + S E G + V+V +NP P D++ RAV L
Sbjct: 926 AEDEVHLGFSRPWDSE----------GYTDLDGMDVLVGRNPAHLPSDIQKRRAVFKKEL 975
Query: 473 HHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEK 528
H D +VFP G P + SG D DGD + CWD +L+ P D PE+
Sbjct: 976 RHFKDVIVFPTAGALPLASMLSGGDYDGDQVWTCWDPQLVNQFTNTPFDPKKIPER 1031
>gi|171685170|ref|XP_001907526.1| hypothetical protein [Podospora anserina S mat+]
gi|170942546|emb|CAP68197.1| unnamed protein product [Podospora anserina S mat+]
Length = 1478
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 143/335 (42%), Gaps = 61/335 (18%)
Query: 219 ITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSS-------T 271
I +DG+G++S +A + G T PSA Q R G KG+ +D + T
Sbjct: 790 IGKVMNDGVGRMSRTVARKIRDIMGLT-EIPSAVQGRIGSAKGMWIMDVLDTGDEEWIET 848
Query: 272 KLSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDH---VFEKKQREGV 328
LS RK ++ + ++DI +Q R T L + G+ V E + ++
Sbjct: 849 WLSQRK----WECDPQTVDI-----HQRTLEIRAYATELKSAGLNLQFLPVLEDRAKDKA 899
Query: 329 AQLDAI---LTD---------------PLKAHEALELMSSGENTNVLKELLMCGYKPDVE 370
AI LT+ PL + L SG V E+ G P+ +
Sbjct: 900 QMKRAIGARLTNDLKKEFDDQKAAFKHPLLLRQWLHENWSGRADRVKNEVAFLGGLPEKK 959
Query: 371 PFLLMML---------QTFRASNLLELRTR------TRIFIQNGRA--MMGCLDETGTLE 413
+L +L Q + EL+ + T++ I+ GR+ + +D LE
Sbjct: 960 EEVLNLLLHSGFDPKHQKYIQDIAWELQKQKCDILSTKLNIKVGRSAYIYMVVDFWEVLE 1019
Query: 414 SGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLH 473
G+V V S+ R + D S S + V+VA++P D++ +RAV P LH
Sbjct: 1020 EGEVHVGFSSKFRGDADDTSYTLLS------DCDVLVARSPAHFASDVQRVRAVFKPQLH 1073
Query: 474 HMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWD 508
+ D +VF +KG P + SG D DGD+ +VCWD
Sbjct: 1074 ALKDVIVFSSKGNVPLAEKLSGGDYDGDMAWVCWD 1108
>gi|212534570|ref|XP_002147441.1| RNA-directed RNA polymerase, putative [Talaromyces marneffei ATCC
18224]
gi|210069840|gb|EEA23930.1| RNA-directed RNA polymerase, putative [Talaromyces marneffei ATCC
18224]
Length = 1361
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 107/432 (24%), Positives = 175/432 (40%), Gaps = 73/432 (16%)
Query: 223 FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVD----PTSSTKLSLRKS 278
+DG +S LA + G TPS FQ R G KG+ VD + + S
Sbjct: 671 MNDGCALMSRPLARAICAELGIDGITPSTFQGRIAGAKGLWMVDRDLDDDKGFWIQISDS 730
Query: 279 MLKYK-----------SESTSLDILANSK-YQPCFLNRQLITLLSTLG-IRDHVFE---- 321
LK K E + ++ + SK + LN QL+ +L+ G +R V +
Sbjct: 731 QLKVKPHPCDFFGHVDEEKITFEVASWSKPLRSSELNTQLLEVLNNRGQVRKRVADIARE 790
Query: 322 -----KKQREGVAQLDAILTDPLKAHEALELMSSGEN----TNVLKELLMCGYKPDVEPF 372
K+ E V + ++I PL ++ + ++ TN+ + + +E
Sbjct: 791 AIRDIYKEFENVMERNSI---PLARALIQKIRPTADDGYSRTNIRR--IDQWLSQTIESV 845
Query: 373 LLMMLQTFRASNLLELRTRTRIFIQNG--------------RAMMGCL-DETGTLESGQV 417
+ + F + LR R RI + + C+ D G LE +V
Sbjct: 846 IRFLEAGFSPRDFPPLRERMRICLNDTLNRYVNELHIPIPLSTYAYCIADPYGVLEENEV 905
Query: 418 FVQCSASRRR-EFLDNSCNNRSGELGVVEGK-VVVAKNPCLHPGDMRVLRAVDVPSLHHM 475
S R + D++ +V+G V+V + P P D++ RAV L H
Sbjct: 906 HFAFSGQWRDCSYFDDA---------MVDGADVLVGRTPAHCPWDIQRRRAVWKSELRHF 956
Query: 476 VDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPL--QFPPMDYTPAPEKV---- 529
D +VF +G P + SG D DGD ++CWD ++ FPP++ + PE
Sbjct: 957 KDVIVFSTRGTTPLASLLSGGDYDGDRPWICWDQGIVETFTNTFPPLEES-GPEHFGLVK 1015
Query: 530 LARDM-TIEDVEEYFAD-YIVNDSLGVICNAHVVHADL---EPDKARSNQCLELAKLSTI 584
A+ M T+ V ++ + + N ++ + V H L E + S LELA L +
Sbjct: 1016 HAQPMSTVGSVGDFLRNAFKFNLAMSNLGRCTVEHEKLSYDEKEGISSPLSLELATLLSH 1075
Query: 585 AVDFSKTGVAAT 596
VD K+G+ T
Sbjct: 1076 LVDSKKSGLQLT 1087
>gi|315048949|ref|XP_003173849.1| RNA directed RNA polymerase [Arthroderma gypseum CBS 118893]
gi|311341816|gb|EFR01019.1| RNA directed RNA polymerase [Arthroderma gypseum CBS 118893]
Length = 1245
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 90/208 (43%), Gaps = 19/208 (9%)
Query: 360 LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFV 419
LL GY P F+ + + ++ +I I D G LE G++++
Sbjct: 748 LLDAGYLPSKLLFVWELFKQHFIDGFVKRLDAIKIKISKSTYAYCIPDHYGVLEEGEIYL 807
Query: 420 QCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
+F D + + G+ V+V++ P P D++ RAV P L H+ +
Sbjct: 808 --------DFGDTWEDGTTDLDGI---DVLVSRAPAHFPSDVQKCRAVYRPELRHLKNVA 856
Query: 480 VFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKV-------LAR 532
+F KGK P + SG D DGD +VCW+ E++ P PM P PE+ R
Sbjct: 857 IFSTKGKVPLASLLSGGDYDGDQVWVCWEPEIVKPFVNYPMPDIPKPEEYGLVKVSQRIR 916
Query: 533 DMTIED-VEEYFADYIVNDSLGVICNAH 559
DM +D +E F + + LG+ H
Sbjct: 917 DMPFDDFMENSFLFNMWQNPLGLCTFKH 944
>gi|302501841|ref|XP_003012912.1| RNA-directed RNA polymerase, putative [Arthroderma benhamiae CBS
112371]
gi|291176473|gb|EFE32272.1| RNA-directed RNA polymerase, putative [Arthroderma benhamiae CBS
112371]
Length = 1125
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 89/365 (24%), Positives = 142/365 (38%), Gaps = 53/365 (14%)
Query: 192 FGSSREALHVDSSDIEIIPDVEV-EDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPS 250
F R L ++ I + P+ + +DD SDG +S L +A + + P+
Sbjct: 322 FTRIRLGLSRTTATITLRPEEFIYDDDPRQEKMSDGFAMMSRSLGRAIADSLCLS-KVPT 380
Query: 251 AFQIRYGGYKGV--VAVDPTSSTKLSLRK-----------SMLKYKSESTSLDILAN--- 294
FQ R G KG+ VA D LR + + K + L IL
Sbjct: 381 IFQGRIAGAKGIWLVAKDDQDIHVKGLRNFETERGYWLVINASQLKVQPPPLVILLTFDV 440
Query: 295 SKY----QPCFLNRQLITLLSTLGI-RDHVFEKKQREGVAQLDAILT----DPLKAHEAL 345
S Y QP LN Q + +L G+ ++++ E L DP+ +
Sbjct: 441 SSYSQPPQPVHLNIQFLMVLQDRGVNKEYILSLIPDEADKFYSEFLLVQNGDPVACRAWV 500
Query: 346 ---------------ELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRT 390
E +T L LL G+ P F+ + + ++
Sbjct: 501 RKNGGDASSQIPALNESTFPTNHTAQLNGLLDAGFSPSNLAFVRRLFKENSLGGFVQKLE 560
Query: 391 RTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVV 450
+I I + D G LE GQ+ + L +S + + +L ++ V+V
Sbjct: 561 ALKIKIPQSTYVYCIPDPYGVLEEGQIHLD---------LGDSWEDGTTDLDGID--VLV 609
Query: 451 AKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHE 510
A+ P P D++ RAV P+L ++ +FP KG P + SG D DGD +VCWD E
Sbjct: 610 ARAPAHLPSDIQKCRAVFHPALRYLKHVAIFPTKGDVPLASLLSGGDYDGDEVWVCWDQE 669
Query: 511 LIPPL 515
++ P
Sbjct: 670 IVKPF 674
>gi|384495848|gb|EIE86339.1| hypothetical protein RO3G_11050 [Rhizopus delemar RA 99-880]
Length = 150
Score = 76.6 bits (187), Expect = 5e-11, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 74/135 (54%), Gaps = 15/135 (11%)
Query: 665 YITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKK---RDLEAIIFAVK 721
YI A + + YD +L L++++G+KTE E+L+G +++ K K + + ++ +V+
Sbjct: 4 YINKARELRDHYDVKLAALINHHGVKTETELLTGYVVKWEKKGKGKTVYKQDDNMLKSVR 63
Query: 722 SLKKE-----ARAWFNKKNESD-SSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFL 775
LK E R + K + D S ++YAKA+AWY+V YHP +Y E +
Sbjct: 64 QLKNEWVDEFEREFIGKHKQIDLSKRNEIYAKAAAWYYVTYHPDERKKYGLE------YF 117
Query: 776 SFPWCIHDKLIEIKR 790
SFPW I+ L IK+
Sbjct: 118 SFPWTIYKYLCHIKQ 132
>gi|389627942|ref|XP_003711624.1| RNA-dependent RNA polymerase [Magnaporthe oryzae 70-15]
gi|351643956|gb|EHA51817.1| RNA-dependent RNA polymerase [Magnaporthe oryzae 70-15]
Length = 1261
Score = 76.3 bits (186), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 77/330 (23%), Positives = 140/330 (42%), Gaps = 45/330 (13%)
Query: 223 FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSS-------TKLSL 275
+DGIG +S +A V + G P A Q R G KG+ +DP T S
Sbjct: 580 MNDGIGLMSRSVAREVQQILGIQDL-PCAVQGRLGSAKGMWIIDPFDQSDDRWIKTYPSQ 638
Query: 276 RK-SMLKYKSESTSLDILANSK-YQPCFLNRQLITLLS-----TLGIRDHVFEKKQREGV 328
RK + S +L+I ++K + LN Q + +L G+RD + E +
Sbjct: 639 RKWNCTSADSHHRTLEIKTHAKPLRSASLNLQFLPVLHDRSKHKHGMRDSIGELLRTSLR 698
Query: 329 AQLDAILTDPLKAHEALELMSSGEN----------------------TNVLKELLMCGYK 366
+L+++ + L+ + N +V+ E++ G+
Sbjct: 699 TELESVQVALRSPQQFLQWVHENSNHRQGLGNTSFEVPRLGGLPERDEDVMAEMVRAGFN 758
Query: 367 PDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRR 426
P + +L + + LR + I + + +D G + G+V + C + +
Sbjct: 759 PRGQKYLQDIAWNIQKQKCETLREKLNIKVGMSTYALMVVDFWGVVPEGEVHL-CFSEK- 816
Query: 427 REFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGK 486
+C+ SG L + + +V+VA++P + D++ ++AV P L + D +VF G
Sbjct: 817 -----FTCDGFSGTL-LNDQEVLVARSPAHYVSDIQKVKAVFRPELKDLKDVIVFSRNGN 870
Query: 487 RPHTNECSGSDLDGDVYFVCWDHELIPPLQ 516
+ SG D DGD+ +VCWD +++ Q
Sbjct: 871 VALADRLSGGDYDGDIAWVCWDSKIVDNFQ 900
>gi|46124253|ref|XP_386680.1| hypothetical protein FG06504.1 [Gibberella zeae PH-1]
Length = 1372
Score = 76.3 bits (186), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 84/324 (25%), Positives = 139/324 (42%), Gaps = 48/324 (14%)
Query: 225 DGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSS---------TKLSL 275
DGI ++S LA V+ + G + TP AFQ R G KG+ VD T S
Sbjct: 694 DGIARMSRGLARRVSIHLGL-LETPCAFQARIGSAKGMWIVDVEDDGLDDDVWIETYPSQ 752
Query: 276 RKSMLKYKS-ESTSLDILANSK-YQPCFLNRQLITLLSTLG---------IRDHVFEKKQ 324
RK +++ + ++ S+ + LN Q I +L I +H+ Q
Sbjct: 753 RKWECEFEDVHHRTFEVREWSRELKSASLNTQFIPVLEAQAPNPNSMRNVIANHLANGLQ 812
Query: 325 REGVAQLDAILTDPLK----AHEALELMSSGE----------NTNVLKELLMCGYKPDVE 370
+ QL A +T P H + S G + +++ +L G+
Sbjct: 813 DDIGGQL-AAMTHPTSLRGWTHRGFDRSSLGRVPFVGGLPDHDDDIVSFMLDAGFDATKC 871
Query: 371 PFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFL 430
FL ++ + +L+ + I I +D TGTLE G+V + S+ + +
Sbjct: 872 RFLRDLVWNNQKRQAEQLKAKMNIKIPRSAYAFMVVDFTGTLEEGEVQLAFSSKFQAD-- 929
Query: 431 DNSCNNRSGELGVV--EGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRP 488
GE + + ++VA+ P D++ +RAV P+L + D +VF +KGK P
Sbjct: 930 --------GESDTLLDDIDILVARAPAHFVSDVQKVRAVFRPNLKRLKDVIVFSSKGKSP 981
Query: 489 HTNECSGSDLDGDVYFVCWDHELI 512
+ SG D DGD +VCWD +++
Sbjct: 982 LADMLSGGDYDGDQAWVCWDPDIV 1005
>gi|258570921|ref|XP_002544264.1| predicted protein [Uncinocarpus reesii 1704]
gi|237904534|gb|EEP78935.1| predicted protein [Uncinocarpus reesii 1704]
Length = 1348
Score = 76.3 bits (186), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 90/340 (26%), Positives = 130/340 (38%), Gaps = 49/340 (14%)
Query: 223 FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSS---TKLSLRKSM 279
+DG +SA LA + G PS FQ R G KG+ VD S + + + S
Sbjct: 688 MNDGCALMSASLANEIKSCLGLKDENPSCFQGRIAGAKGIWMVDNADSNGDSWIEISDSQ 747
Query: 280 LKYKSESTSLDILANS------------KYQPCFLNRQLITLLSTLGIR-DHVFEKKQRE 326
LK K + I+ + + +P LN QL+ +L G++ D + E +RE
Sbjct: 748 LKIKPHPSKCKIMLDDYQLTFEVVSWSRELRPVNLNVQLLMVLQHGGVQTDRLKELVRRE 807
Query: 327 G---VAQLDAILTDPLKAHEALELMS-------------SGENTNVLKELLMCGYKPDVE 370
A +T+ + + ++ EN LL G+ P
Sbjct: 808 SSAWYADFKNTITNEIVSRGWIQKQGLYDRRKTRRIDDFPTENAEQAILLLDSGFHPLRL 867
Query: 371 PFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQV---FVQCSASRRR 427
+L +L TF L + +I I D L +V F + S
Sbjct: 868 AYLKELLTTFLKDYCNRLDS-LKIRIPESTYAYCIADPYEVLAEDEVHFGFSKPWESYGY 926
Query: 428 EFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKR 487
LD GV V++ +NP P D++ RAV L H D +VFP GK
Sbjct: 927 TDLD----------GV---DVLLGRNPAHLPNDIQKRRAVFKKELRHFKDVIVFPTVGKV 973
Query: 488 PHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPE 527
P SG D DGD +VCWD EL+ P + PE
Sbjct: 974 PLAGMLSGGDYDGDQVWVCWDPELVNTFINTPFEPEKVPE 1013
>gi|7505900|pir||T23669 hypothetical protein M01G12.12 - Caenorhabditis elegans (fragment)
gi|25395342|pir||F87936 protein M01G12.12 [imported] - Caenorhabditis elegans
Length = 604
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 25/165 (15%)
Query: 46 LDDGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVL 105
+++G V KV+ TP++V ++ PE+ + NRV+R++ + + LR++F D++ K+ +
Sbjct: 443 IEEGYQRVRKVIFTPTRVIYTPPEMIMGNRVLRNFDRDGTHVLRVTFRDDNNRKMRANAT 502
Query: 106 SPLISSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFA------- 158
L+ V L +GIV+ ++ F L S+SQ++DN +
Sbjct: 503 GELLDIC-----------VKKYLEHGIVVANRDFGFLGCSSSQMRDNGAYFMVKNTDNRH 551
Query: 159 -------SRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSR 196
S+ + +R +G+F I+N+ K ARLGQ F SR
Sbjct: 552 KNACKMNSKFKPNIDSVRNQLGNFLQIENIPKLMARLGQCFTQSR 596
>gi|453087546|gb|EMF15587.1| hypothetical protein SEPMUDRAFT_123844 [Mycosphaerella populorum
SO2202]
Length = 1406
Score = 75.9 bits (185), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 121/541 (22%), Positives = 205/541 (37%), Gaps = 123/541 (22%)
Query: 222 CFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK--------- 272
SDG ++S +A +K P+ QIR G KG+ +D +
Sbjct: 714 VMSDGCNRMSYWIAYQYSKKLCLK-RVPATLQIRAAGAKGLWYIDEPAHGDPDIRPAGPL 772
Query: 273 LSLRKSMLKYK--------SESTSLDIL-ANSKYQPCFLNRQLITLLSTLGIRDHVFEKK 323
L+L S +K E+ S++++ AN +P L+ + +L G+
Sbjct: 773 LNLAPSQVKVHRDTFYGCDEETLSVNVVKANPGARPSLLHIGYLPILVDRGVPLENIRTL 832
Query: 324 QREGVA-QLDAILTDPLKAHEALELMSSGENTNVLKEL--------LMCGYKPDVEPFLL 374
R+ V Q D L + L A +L L + N E L+ G+ +E ++
Sbjct: 833 VRDLVTRQTDGFL-EALAADGSLRLRQWIASHNEFFEARRREAGIDLLAGFPKALEERII 891
Query: 375 MMLQT---------------FRASNLLELRTRT-RIFIQNGRA-----------MMGCLD 407
ML+ AS+ +L+ + +I + M G LD
Sbjct: 892 QMLEAGFAPKQNKYLASEVKMLASSYFDLKNKNFKIELPKSTTLWGIAEPKTGHMRGKLD 951
Query: 408 ETGTLESGQV-------FVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGD 460
TG+L G+V F R FLD+ ++VA+NP + P D
Sbjct: 952 PTGSLRPGEVCVCFEEPFDVADVGTRVNFLDDI-------------DILVARNPAMGPSD 998
Query: 461 MRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPM 520
++ +RAV P L ++F A+G RP N+ G D DGD ++ W+ L P + P
Sbjct: 999 IQKVRAVFKPQLAKYAGNIIFSARGMRPLANKLQGGDYDGDAFWFTWEPLLTEPFKNAPA 1058
Query: 521 DYTPA-PEKV--------LARDMTIEDVEEYFADYIVN--------DSLGVICNAH--VV 561
+ P P+++ L+ + + E+ + Y+ + LG++ H +V
Sbjct: 1059 PWKPPDPDQLGITKDKYKLSDHVDDPNSEQQWCRYLSTMAAKRMDANMLGIVTLFHERLV 1118
Query: 562 HADLEPDKARSNQCLELAKLSTIAVDFSKTG------------VAATIPSGLRVEIYPDF 609
+A L S + + L VD K G + +P L Y F
Sbjct: 1119 YAGL---PIGSEEVMRFVYLHDYLVDADKQGYDFSQADFDAYKASRPLPRNLPEPKYWQF 1175
Query: 610 MEKQDKTCYESQ---RVIGKLYRAVK-------DIAPP---TATIKSFTKEVAMQSYDTD 656
QDK +++ R++G+ A D+ P +A I++ SYD D
Sbjct: 1176 TRSQDKNQQKNEIQGRLVGQAQTAASAIDTIFFDVVQPIVESALIRASVILEPAASYDPD 1235
Query: 657 M 657
+
Sbjct: 1236 L 1236
>gi|46117554|ref|XP_384795.1| hypothetical protein FG04619.1 [Gibberella zeae PH-1]
Length = 1079
Score = 75.9 bits (185), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 93/382 (24%), Positives = 155/382 (40%), Gaps = 74/382 (19%)
Query: 223 FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVD----PTS---STKLSL 275
+DGIG++S L V +N Y P+A Q R G KG+ +D P+ T S
Sbjct: 397 MNDGIGRVSLALMRKV-QNALQLDYLPAAIQGRIGSAKGLWVLDIGTQPSEIWLETYESQ 455
Query: 276 RKSMLKYKS-ESTSLDILANSK-YQPCFLNRQLITLLSTLGIR----------------- 316
RK +K E +L++L+ S + LN Q I++L + +
Sbjct: 456 RKWNCDWKDPEHRTLEVLSQSSDLKTATLNHQFISILESRSVDRRNTRAAMVKHMKINLQ 515
Query: 317 ---DHVFEK-KQRE---------------GVAQLDAILTDPLKAHEALELMSSGENTNVL 357
DH E KQ E G + I P E + +S G
Sbjct: 516 TSLDHAKESMKQPELFRKWIHETSYASYGGRNESWFIGGLPKSWAEQMSFLSDG------ 569
Query: 358 KELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQV 417
G++P +L + S + + RI I + +D G L +V
Sbjct: 570 ------GFEPLHLRYLHNLTTNHMESQWKNTKEKMRIEISQSTWALMVVDFQGVLGPDEV 623
Query: 418 FVQCSASRRREFLDNSCNNRSGELGVVEG-KVVVAKNPCLHPGDMRVLRAVDVPSLHHMV 476
+ C +S + + + +EG V+VA+ P P D++ ++AV P L H+
Sbjct: 624 QL-CFSSPFNDGFEKRYD--------LEGFDVIVARCPAHLPSDIQKVKAVFKPELRHLK 674
Query: 477 DCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVL-ARDMT 535
D VVFP G+ P + SG D DGD ++CWD +++ + + P+ A D T
Sbjct: 675 DVVVFPFVGQEPLAGKLSGGDYDGDKAWICWDADIVDNFRNSEVPQKPSFNGYFEANDHT 734
Query: 536 IEDV-----EEYFADYIVNDSL 552
+E + + ++ DY++ ++
Sbjct: 735 VESLILKHGKSHYLDYLLEEAF 756
>gi|242048812|ref|XP_002462152.1| hypothetical protein SORBIDRAFT_02g020722 [Sorghum bicolor]
gi|241925529|gb|EER98673.1| hypothetical protein SORBIDRAFT_02g020722 [Sorghum bicolor]
Length = 88
Score = 75.5 bits (184), Expect = 1e-10, Method: Composition-based stats.
Identities = 36/82 (43%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Query: 511 LIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYFADY-IVNDSLGVICNAHVVHADLEPDK 569
+IP PMDYT ++ +T+E+++++F Y + ND+LGVI H++HAD P K
Sbjct: 7 MIPEKVDAPMDYTATRPCIMDHAVTLEEIQKHFVSYYMTNDTLGVISIVHLIHADHNPLK 66
Query: 570 ARSNQCLELAKLSTIAVDFSKT 591
A S +CL+LA L ++AVDF+KT
Sbjct: 67 AHSPECLQLAALHSMAVDFAKT 88
>gi|406863804|gb|EKD16851.1| hypothetical protein MBM_05320 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1323
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 90/369 (24%), Positives = 156/369 (42%), Gaps = 58/369 (15%)
Query: 192 FGSSREALHVDSSDIEIIPD-VEVEDDGITY-----CFSDGIGKISAELAEIVAKNCGFT 245
F + AL S + ++PD +++ IT+ +DG G++S LA + + G +
Sbjct: 589 FNRTTLALSRTESTVVLMPDQIKIMAQNITFGDPKNVMNDGAGRMSPSLALKITQTLGLS 648
Query: 246 IYTPSAFQIRYGGYKGV-------VAVDPTSSTKLSLRKSMLKYKSESTSLD-------- 290
Y P+AFQ R G KG+ D T S RK + K + S D
Sbjct: 649 -YLPAAFQGRIGEAKGLWITDLHYTGQDDWIETYPSQRKWVRKKTGDQESDDESHRTFEV 707
Query: 291 ---------ILANSKYQPCFLNR--------QLITLLSTLGIRDHVFEKKQREGVAQLDA 333
N ++ P ++R ++++ + G++ V E ++ QL
Sbjct: 708 SKCSGPLKSADLNLQFLPILMDRAKDKLLMKRVLSDILKHGLQLRVQEIQEARDHPQLFR 767
Query: 334 IL---TDP-LKAHEALELMSSGENTNVLKE----LLMCGYKPDVEPFLLMMLQTFRASNL 385
++P +K E + NVL+E LL G+ P F+ + + +
Sbjct: 768 QWVRDSNPNMKERERGSIGYKAGLPNVLEERLNILLDAGFHPKGIRFMEDLAKKVFTKRI 827
Query: 386 LELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVE 445
EL+ R I + D G LE G+V++ S+ F+DN SG G
Sbjct: 828 DELKKRLNITVGRSTYAYMVPDFWGVLEEGEVYIDFSS-----FVDNV----SGLSGASP 878
Query: 446 G--KVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVY 503
+++VA++P D++ ++AV L + D ++F KG ++ SG D DGDV
Sbjct: 879 SGSQILVARSPAHFVSDIQKVKAVIREELVGLKDVIIFSVKGYPALADKLSGGDYDGDVA 938
Query: 504 FVCWDHELI 512
+VCW+ ++
Sbjct: 939 WVCWEPAIV 947
>gi|320170627|gb|EFW47526.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 1247
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 124/296 (41%), Gaps = 60/296 (20%)
Query: 247 YTPSAFQIRYGGYKG-VVAVDPTSSTKLS-------------LRKSMLKYKS----ESTS 288
+ PSA+QIR+GG+KG +V V T +L L +SMLK+++ E
Sbjct: 418 FVPSAYQIRFGGFKGMLVVVTETVQEQLCKGISAAAPMPSMLLPRSMLKFQTPDFPEHRR 477
Query: 289 LDILANS-KYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQL----DAILTDPLKAHE 343
L++L + P LN +++ +L + V + V + +L D KA
Sbjct: 478 LEVLGCAFPSSPVTLNNEIVDMLIGVATDSLVMRGFLKRLVTTFLDDCNFLLADQQKA-L 536
Query: 344 ALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMM 403
A L E ++ +L G+ L +F S L+ L I + + +
Sbjct: 537 AYYLQ---EKDDIGVRMLAAGHS-----LKFTYLTSFFRSKLIPLH----IPLPSTARLY 584
Query: 404 GCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRV 463
G D + L G V+V SGE G+V G VV+ K PC D++
Sbjct: 585 GVADWSSLLPPGHVYVN-----------------SGETGLVSGDVVMLKEPCFLRTDIQR 627
Query: 464 LRAVD-----VPSLHHMVDCVVFPAKGK--RPHTNECSGSDLDGDVYFVCWDHELI 512
+A+D L H+ + VVF + +GSDLDGD + VCWD ++
Sbjct: 628 FKAIDRDHVAFKQLCHLRNVVVFSTASSCTSSDASAMAGSDLDGDKFIVCWDQTIL 683
>gi|440464051|gb|ELQ33552.1| RNA-dependent RNA polymerase [Magnaporthe oryzae Y34]
gi|440477644|gb|ELQ58660.1| RNA-dependent RNA polymerase [Magnaporthe oryzae P131]
Length = 1738
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 140/331 (42%), Gaps = 45/331 (13%)
Query: 222 CFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTK---LSLRKS 278
+DGIG +S +A V + G P A Q R G KG+ +DP + + S
Sbjct: 584 VMNDGIGLMSRSVAREVQQILGIQDL-PCAVQGRLGSAKGMWIIDPFDQSDDRWIKTYPS 642
Query: 279 MLKYK-----SESTSLDILANSK-YQPCFLNRQLITLLS-----TLGIRDHVFEKKQREG 327
K+ S +L+I ++K + LN Q + +L G+RD + E +
Sbjct: 643 QRKWNCTSADSHHRTLEIKTHAKPLRSASLNLQFLPVLHDRSKHKHGMRDSIGELLRTSL 702
Query: 328 VAQLDAILTDPLKAHEALELMSSGEN----------------------TNVLKELLMCGY 365
+L+++ + L+ + N +V+ E++ G+
Sbjct: 703 RTELESVQVALRSPQQFLQWVHENSNHRQGLGNTSFEVPRLGGLPERDEDVMAEMVRAGF 762
Query: 366 KPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASR 425
P + +L + + LR + I + + +D G + G+V + C + +
Sbjct: 763 NPRGQKYLQDIAWNIQKQKCETLREKLNIKVGMSTYALMVVDFWGVVPEGEVHL-CFSEK 821
Query: 426 RREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKG 485
+C+ SG L + + +V+VA++P + D++ ++AV P L + D +VF G
Sbjct: 822 ------FTCDGFSGTL-LNDQEVLVARSPAHYVSDIQKVKAVFRPELKDLKDVIVFSRNG 874
Query: 486 KRPHTNECSGSDLDGDVYFVCWDHELIPPLQ 516
+ SG D DGD+ +VCWD +++ Q
Sbjct: 875 NVALADRLSGGDYDGDIAWVCWDSKIVDNFQ 905
>gi|393236487|gb|EJD44035.1| hypothetical protein AURDEDRAFT_114369 [Auricularia delicata
TFB-10046 SS5]
Length = 1203
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 135/633 (21%), Positives = 222/633 (35%), Gaps = 131/633 (20%)
Query: 63 VYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYE 122
+ + P + S R+ R + D +RL D+D + S + P + N R +
Sbjct: 334 IILNEPAVGPSTRLTRRFGS--DRIIRLRVPDQD--GIQSILEQPFVLHANVFRSFFAKD 389
Query: 123 RVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGD--FRDIKN 180
LR D+ E + + P+LT D +
Sbjct: 390 GTAFLLRT-----DETLEDIGVYEGALPPPYKPHHTGLPKLTLDSFFAWANDPVLNCNQG 444
Query: 181 VAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVE--DDG----ITYCFSDGIGKISAEL 234
K+++RL +S A V ++ I D+ E G +DG G ++
Sbjct: 445 AGKWSSRLALFLSTSIPAFRVKKENVHFISDIAGEGCQPGEKVPTEKNMTDGSGFVNRAG 504
Query: 235 AEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSS-------TKLSLRKSMLKYKSEST 287
E K YTPS Q R GG KG+ P + ++ +R S K K +
Sbjct: 505 LEACQKRVEMD-YTPSGAQGRIGGAKGMFFRHPQAGEYGNLTEPEIWIRASQEKIKYAAF 563
Query: 288 S-------------LDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAI 334
S D+L L+ QLI + G+ VF Q + +L
Sbjct: 564 SPTSREPVDEAFLTFDLLKVPHTSAARLSAQLILNTESNGVPARVFVTLQEAALDELVVP 623
Query: 335 LT----DPLKAHEALELMSSG-----------------------ENTNVLKE-------- 359
LT D + A +L G EN +V+++
Sbjct: 624 LTTWAGDRGMPNLAAQLEQKGLLFARRLATLAAGAARARGHRNRENEDVVEDDPDGVSES 683
Query: 360 ---------------LLMCGYKPDVEPFLLMMLQTFRASNL--------LELRTRTRIFI 396
LL + P +L +L++ +++ +EL + FI
Sbjct: 684 AVAACLDRWGEVCLRLLHARFHPQSCKYLYDILRSVIKTHIESFVKDYHIELPLSAQAFI 743
Query: 397 QNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCL 456
D G LE G++F + R+ N + V+ G V+V ++PC+
Sbjct: 744 --------APDPFGVLEVGEIFFHPRSHTLRD-----VNGHEFDDNVLLGDVLVGRHPCV 790
Query: 457 HPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ 516
P D+R + AVD +L D + F KG R N SG D DGD + W E++ P Q
Sbjct: 791 LPTDVRKVVAVDSLALRPYRDIIFFSTKGTRSLANILSGGDYDGDTAVLIWQTEVVQPFQ 850
Query: 517 FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVN-----------------DSLGVICNAH 559
P+ P V + + E + D + N + +G+ N H
Sbjct: 851 NAPLHLADPPANV---ETSFEAEMQSVKDLLTNGHFNHLRLSFLLSGLKKNPVGLYSNFH 907
Query: 560 VVHADLEPDKARSNQCLELAKLSTIAVDFSKTG 592
++ ++ R+ + LA +S +D KTG
Sbjct: 908 LLACYVQ--GYRNEETRRLAHISGQLLDAPKTG 938
>gi|426198482|gb|EKV48408.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1114
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 105/255 (41%), Gaps = 31/255 (12%)
Query: 359 ELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVF 418
E L G+ P P L + S + I + D +G L S +VF
Sbjct: 631 EFLDSGFHPKTCPVLREKMHKVVHSAISRAVENYTIELPFSAGAWIIPDPSGCLGSNEVF 690
Query: 419 VQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDC 478
QCS R LD + E ++ G V++ ++PC P D++ +A+DVP LH D
Sbjct: 691 FQCS--RSLPALDGT------ETHIITGDVLITRDPCRLPTDVQKWKAIDVPELHQYKDV 742
Query: 479 VVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI-------PPLQFPPMDYTPAPE---- 527
++ +G R + +G D DGD + W EL+ P PP++ E
Sbjct: 743 IILSVQGPRRAADWLAGGDYDGDKAKLIWQPELVQDFVNANPSFADPPLNLDSKFEIENK 802
Query: 528 ---------KVLARDMTIEDVEEYFADYIVNDSL-GVICNAHVVHADLEPDKARSNQCLE 577
+ + D I +V++Y + + +L G N H V + + +S +
Sbjct: 803 QVHEFLAEIEGCSEDNKINEVQKYLLGTLKDFTLVGKYSNFHEV--SVYTNGYKSKETKL 860
Query: 578 LAKLSTIAVDFSKTG 592
LA + T +D KTG
Sbjct: 861 LAYMFTTILDGRKTG 875
>gi|251765119|sp|Q5QMN5.2|RDR3_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 3; Short=OsRDR3
Length = 1153
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 119/490 (24%), Positives = 197/490 (40%), Gaps = 100/490 (20%)
Query: 214 VEDDGITYCFSDGIGKISAELAEIVAKNCGFTIY-------TPSAFQIR--YGG--YKGV 262
V D +DG G +S +LA NC +I+ P Q R Y G KG
Sbjct: 552 VHKDQEPLIHTDGTGLVSVDLA----LNCPTSIFKGKFLKPQPLLMQFRLFYNGSAVKGT 607
Query: 263 VAVD---PTSSTKLSLRKSMLKYKSES-----------------------------TSLD 290
V VD P ++ + +R SM+K ++ S +
Sbjct: 608 VLVDRRLPPAT--ILIRPSMVKIETHPELSGVRSVNSSEIVSARNAKKSLSGVQSVNSFE 665
Query: 291 ILANS-KYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALEL-M 348
I++ S + + +R LITLL G+ + F + + + + D +AL +
Sbjct: 666 IVSTSNRPRRTLTSRFLITLLCYGGVPEEYFLELLQSAIEGAENACYD---YEDALRIAF 722
Query: 349 SSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDE 408
S + + + ++ P E +L L F A + + +I I +M D
Sbjct: 723 SYADMEDSMSARMILSGIPLEESYLQHRLD-FMAQQERKGIKQGKIPIDECYYLMDTTDP 781
Query: 409 TGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVD 468
TGTL +V V L+N G G V+V K+P LH GD+ VL+A
Sbjct: 782 TGTLRPNEVCV---------ILEN---------GQFSGDVLVYKHPGLHFGDIHVLKATY 823
Query: 469 VPSLH-----HMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYT 523
+ L + ++FP G R +E + SD DGD+Y+V + +L+ + P +
Sbjct: 824 IRDLEKEYVGYAKYAILFPISGPRSLADEMANSDFDGDIYWVSKNPKLLEHFK-PSEPWV 882
Query: 524 PAPEKVLARDMTIEDVEE------YFADYIVND-----SLGVICNAHVVHAD-LEPD--- 568
A + + +D E F +++ +LG ++ + + D L D
Sbjct: 883 QAIKPKKTKQKKPQDCNESKLERLLFHEFLKTRFTPSFALGTAADSWLAYMDRLLTDSLD 942
Query: 569 ----KARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVI 624
K + L+L L +A+D KTG IPS L V+ YP FM + Y S ++
Sbjct: 943 EIEKKLIEEKMLKLVDLYYLALDAPKTGNKVNIPSDLMVKQYPHFMGR--SFSYHSSSIL 1000
Query: 625 GKLYRAVKDI 634
G++Y +D+
Sbjct: 1001 GQIYDKAEDV 1010
>gi|402074256|gb|EJT69785.1| RNA-dependent RNA polymerase [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1442
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/342 (22%), Positives = 148/342 (43%), Gaps = 52/342 (15%)
Query: 222 CFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP---TSSTKLSLRKS 278
+DG+G +S +A+ + K G + P A Q R G KG+ +D + + S
Sbjct: 731 VMNDGVGLMSRSVAQKIQKTLGL-VTVPCAVQGRLGSAKGMWIIDVEDLSGEDWIETYPS 789
Query: 279 MLKYK-----SESTSLDILAN-SKYQPCFLNRQLITLLS---------TLGIRDHVFEKK 323
K++ + +L++ ++ S+ + LN Q + +L + D + E
Sbjct: 790 QRKWECDIGDPDQRTLEVRSHASELRSARLNLQFLPVLEDRSRDKDAFRTAVGDLLGENL 849
Query: 324 QREGVAQLDAILTDPLKAHEALELMSSGENTNV------------------LKELLMCGY 365
Q E + L A L P++ + + SS +T V + +L G+
Sbjct: 850 QTE-LGGLRAALNRPIQHRQWVHENSSNRDTRVRHGQVPFLGGSPDKDEELMNMMLDHGF 908
Query: 366 KPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASR 425
P + +L + + L+ + I + +D G LE +V + C +S+
Sbjct: 909 DPKKQKYLQDLAWVLQKKKCETLKEKLNITVGKSAYAYMVVDFGGHLEPDEVHM-CFSSK 967
Query: 426 RR--EFLDNSCNNRSGELGVVEG-KVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFP 482
+ +F D +++G +++VA++P + D++ ++AV P+L + D +VFP
Sbjct: 968 FQVDDFADT----------LLDGIELLVARSPAHYISDIQKVKAVFKPALKDLKDVIVFP 1017
Query: 483 AKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTP 524
KG+ ++ SG D DGD +VCWD ++ P+ P
Sbjct: 1018 RKGRVALADKLSGGDYDGDKAWVCWDQAIVKNFVNSPVPRAP 1059
>gi|115435090|ref|NP_001042303.1| Os01g0197900 [Oryza sativa Japonica Group]
gi|56201770|dbj|BAD73220.1| unknown protein [Oryza sativa Japonica Group]
gi|56201877|dbj|BAD73327.1| unknown protein [Oryza sativa Japonica Group]
gi|113531834|dbj|BAF04217.1| Os01g0197900 [Oryza sativa Japonica Group]
Length = 387
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 112/256 (43%), Gaps = 45/256 (17%)
Query: 403 MGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMR 462
M D TGTL +V V L+N G G V+V K+P LH GD+
Sbjct: 1 MDTTDPTGTLRPNEVCV---------ILEN---------GQFSGDVLVYKHPGLHFGDIH 42
Query: 463 VLRAVDVPSLH-----HMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQF 517
VL+A + L + ++FP G R +E + SD DGD+Y+V + +L+ +
Sbjct: 43 VLKATYIRDLEKEYVGYAKYAILFPISGPRSLADEMANSDFDGDIYWVSKNPKLLEHFK- 101
Query: 518 PPMDYTPAPEKVLARDMTIEDVEE------YFADYIVND-----SLGVICNAHVVHAD-L 565
P + A + + +D E F +++ +LG ++ + + D L
Sbjct: 102 PSEPWVQAIKPKKTKQKKPQDCNESKLERLLFHEFLKTRFTPSFALGTAADSWLAYMDRL 161
Query: 566 EPD-------KARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCY 618
D K + L+L L +A+D KTG IPS L V+ YP FM + Y
Sbjct: 162 LTDSLDEIEKKLIEEKMLKLVDLYYLALDAPKTGNKVNIPSDLMVKQYPHFMGRS--FSY 219
Query: 619 ESQRVIGKLYRAVKDI 634
S ++G++Y +D+
Sbjct: 220 HSSSILGQIYDKAEDV 235
>gi|320034225|gb|EFW16170.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 1289
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 85/356 (23%), Positives = 133/356 (37%), Gaps = 49/356 (13%)
Query: 211 DVEVEDDGITYC----FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVD 266
D+ +ED G SDG +S LA + G PS FQ R G KG+ VD
Sbjct: 604 DIPLEDRGNMKSSQPDMSDGCALMSVSLANRIKDCLGLKEENPSCFQGRIAGAKGIWMVD 663
Query: 267 PTS-----STKLSLRKSMLKYKSEST-----------SLDILANSK-YQPCFLNRQLITL 309
+ + + S LK K + + ++++ S+ +P LN QL+ +
Sbjct: 664 GRNIAFKGEECIQISGSQLKTKPHPSDCRMMLDDHQLTFEVVSWSRELRPVNLNVQLLMV 723
Query: 310 LSTLGIRDHVFEKKQR----EGVAQLDAILTDPLKAHEALELMS-------------SGE 352
L G++ + R + I+T+ + + ++ E
Sbjct: 724 LQHGGVQTDRLKNLVRCEMNTWYQEFKDIITNEIASRAWVQKQGLYEKRKTRRIDDFPTE 783
Query: 353 NTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTL 412
N LL G+ P +L+ L+TF L + +I I D L
Sbjct: 784 NVEQAILLLDSGFHPLKSVYLMNRLKTFLDDYCARLDS-LKIRIPESTYAYCIADPYNVL 842
Query: 413 ESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSL 472
+V + S E G + V+V +NP P D++ RAV L
Sbjct: 843 AEDEVHLGFSKPWDSE----------GYTDLDGMDVLVGRNPAHLPSDIQKRRAVFKKEL 892
Query: 473 HHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEK 528
+ D +VFP G P + SG D DGD + CWD +L+ P D PE+
Sbjct: 893 RYFKDVIVFPTAGALPLASMLSGGDYDGDQVWTCWDPQLVNQFTNTPFDPKKIPER 948
>gi|303319845|ref|XP_003069922.1| RNA dependent RNA polymerase family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240109608|gb|EER27777.1| RNA dependent RNA polymerase family protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 1372
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 85/356 (23%), Positives = 133/356 (37%), Gaps = 49/356 (13%)
Query: 211 DVEVEDDGITYC----FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVD 266
D+ +ED G SDG +S LA + G PS FQ R G KG+ VD
Sbjct: 687 DIPLEDRGNMKSSQPDMSDGCALMSVSLANRIKDCLGLKEENPSCFQGRIAGAKGIWMVD 746
Query: 267 PTS-----STKLSLRKSMLKYKSEST-----------SLDILANSK-YQPCFLNRQLITL 309
+ + + S LK K + + ++++ S+ +P LN QL+ +
Sbjct: 747 GRNIAFKGEECIQISGSQLKTKPHPSDCRMMLDDHQLTFEVVSWSRELRPVNLNVQLLMV 806
Query: 310 LSTLGIRDHVFEKKQR----EGVAQLDAILTDPLKAHEALELMS-------------SGE 352
L G++ + R + I+T+ + + ++ E
Sbjct: 807 LQHGGVQTDRLKNLVRCEMNTWYQEFKDIITNEIASRAWVQKQGLYEKRKTRRIDDFPTE 866
Query: 353 NTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTL 412
N LL G+ P +L+ L+TF L + +I I D L
Sbjct: 867 NVEQAILLLDSGFHPLKSVYLMNRLKTFLDDYCARLDS-LKIRIPESTYAYCIADPYNVL 925
Query: 413 ESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSL 472
+V + S E G + V+V +NP P D++ RAV L
Sbjct: 926 AEDEVHLGFSKPWDSE----------GYTDLDGMDVLVGRNPAHLPSDIQKRRAVFKKEL 975
Query: 473 HHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEK 528
+ D +VFP G P + SG D DGD + CWD +L+ P D PE+
Sbjct: 976 RYFKDVIVFPTAGALPLASMLSGGDYDGDQVWTCWDPQLVNQFTNAPFDPKKIPER 1031
>gi|403160269|ref|XP_003320812.2| hypothetical protein PGTG_02834 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375169485|gb|EFP76393.2| hypothetical protein PGTG_02834 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1164
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 135/315 (42%), Gaps = 53/315 (16%)
Query: 238 VAKNCGFTIYTPSAFQIRYGGYKGVVAVD---PTSSTKLSLRKSMLKYKSESTSLDILA- 293
+ K G + Y P+A+Q R KG+ + + +R S K D +
Sbjct: 469 IKKALGLS-YLPAAYQARILKSKGLWYLSRDLDKDGFWIEIRDSQWKGDVRCKPGDAITF 527
Query: 294 -----NSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGV-AQLDAIL-TDPLKAHEALE 346
+++ + +NRQ I ++ + + VF +QRE A LD + T+P+ +ALE
Sbjct: 528 NICNFSTRAKAGHVNRQSIPVIVSRNVPVSVFTDRQREAFKAVLDELTSTNPVHLSQALE 587
Query: 347 L-----------MSSGENTNVLKELLMCGYKPD---------VEPFLLMMLQTFRASN-- 384
+ +++ N+ V KE+ G + +E + ++ F A N
Sbjct: 588 VHGHLLNLKAKRLTTTTNSFVRKEVDEVGVTWEKYSNRPCNAMEEIVELLKSGFTARNNR 647
Query: 385 -----------LLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNS 433
+ E ++ I + + D TGTL+ G+VF++ S R +
Sbjct: 648 VVDRLNVAGKQICEKMMNFKVEISSSATIYAIPDPTGTLKEGEVFLRLSRFRDPK----- 702
Query: 434 CNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNEC 493
S + +++G VVA++PC+ P D R ++AV L D +V +GK+ +
Sbjct: 703 ---TSVPVNILKGDCVVARSPCVLPTDARKVKAVTNQRLACYEDVLVCSIQGKKSLLDYL 759
Query: 494 SGSDLDGDVYFVCWD 508
SG D DGDV V WD
Sbjct: 760 SGGDYDGDVVIVIWD 774
>gi|403411358|emb|CCL98058.1| predicted protein [Fibroporia radiculosa]
Length = 1270
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 7/166 (4%)
Query: 359 ELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVF 418
ELL G+ P P L L+ + E RI ++N D G LE GQ+
Sbjct: 782 ELLQAGFHPLELPILYEKLRQIVEKRIEEFIKEYRIVLENSAEAFIMPDPYGVLEEGQIQ 841
Query: 419 VQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDC 478
+ + + D + G+V++ +NP P D+R + AV P L V+
Sbjct: 842 FIATQNLKDPLEDPMPM-------AITGEVLLYRNPARVPSDVRKVIAVVHPKLVEYVNV 894
Query: 479 VVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTP 524
+V P KGKR N +G D+DGDV ++ L+ P + P++ P
Sbjct: 895 IVLPTKGKRSLANILAGGDVDGDVAVCIYEPSLVKPFRNGPINDPP 940
>gi|222617920|gb|EEE54052.1| hypothetical protein OsJ_00745 [Oryza sativa Japonica Group]
Length = 1243
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 98/400 (24%), Positives = 167/400 (41%), Gaps = 51/400 (12%)
Query: 261 GVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANS-KYQPCFLNRQLITLLSTLGIRDHV 319
GV +V+ + K L S +I++ S + + +R LITLL G+ +
Sbjct: 717 GVRSVNSSEIVSARNAKKSLSGVQSVNSFEIVSTSNRPRRTLTSRFLITLLCYGGVPEEY 776
Query: 320 FEKKQREGVAQLDAILTDPLKAHEALEL-MSSGENTNVLKELLMCGYKPDVEPFLLMMLQ 378
F + + + + D +AL + S + + + ++ P E +L L
Sbjct: 777 FLELLQSAIEGAENACYD---YEDALRIAFSYADMEDSMSARMILSGIPLEESYLQHRLD 833
Query: 379 TFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRS 438
F A + + +I I +M D TGTL +V V L+N
Sbjct: 834 -FMAQQERKGIKQGKIPIDECYYLMDTTDPTGTLRPNEVCV---------ILEN------ 877
Query: 439 GELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLH-----HMVDCVVFPAKGKRPHTNEC 493
G G V+V K+P LH GD+ VL+A + L + ++FP G R +E
Sbjct: 878 ---GQFSGDVLVYKHPGLHFGDIHVLKATYIRDLEKEYVGYAKYAILFPISGPRSLADEM 934
Query: 494 SGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEE------YFADYI 547
+ SD DGD+Y+V + +L+ + P + A + + +D E F +++
Sbjct: 935 ANSDFDGDIYWVSKNPKLLEHFK-PSEPWVQAIKPKKTKQKKPQDCNESKLERLLFHEFL 993
Query: 548 VND-----SLGVICNAHVVHAD-LEPD-------KARSNQCLELAKLSTIAVDFSKTGVA 594
+LG ++ + + D L D K + L+L L +A+D KTG
Sbjct: 994 KTRFTPSFALGTAADSWLAYMDRLLTDSLDEIEKKLIEEKMLKLVDLYYLALDAPKTGNK 1053
Query: 595 ATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDI 634
IPS L V+ YP FM + Y S ++G++Y +D+
Sbjct: 1054 VNIPSDLMVKQYPHFMGRS--FSYHSSSILGQIYDKAEDV 1091
>gi|147767777|emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera]
Length = 1202
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 116/546 (21%), Positives = 217/546 (39%), Gaps = 135/546 (24%)
Query: 273 LSLRKSMLKYKSES--------TSLDILANSKYQP--CFLNRQLITLLSTLGIRDHVFEK 322
+ +R SM+K +++ S++I S QP +L++ LI LLS G+ + F
Sbjct: 753 IQIRPSMIKVETDPKLSDTQTVNSVEINGTSN-QPRRSYLSKYLIALLSYGGVPNEYFMN 811
Query: 323 KQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRA 382
++ + ++ + L+ E + +++ +++ G D EPFL L
Sbjct: 812 LLKDALEDAPSVQSISLRFDEM--------DDSIVTRMILSGIPID-EPFLQHRLSFMVN 862
Query: 383 SNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELG 442
LR ++ + + +MG D TG L+S +V + LD+ G
Sbjct: 863 EERKGLRV-GKLPVNDCFYLMGTADPTGKLKSDEVCI---------ILDH---------G 903
Query: 443 VVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDV 502
V+G+V+V K+P LH GD+ VL A V +L + P + S
Sbjct: 904 QVQGRVLVYKHPGLHFGDIHVLNATYVEALE----------EASEPWMRKXSTRH----- 948
Query: 503 YFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYF--ADYIVNDSLGVICNAHV 560
+P + P D++P D ++ + F + + ++G+ + +
Sbjct: 949 ---------VPSKR--PTDFSP--------DELEHELFQLFLTTRFQTSSAIGMAADNWL 989
Query: 561 VHAD----LEPDKARSNQC-----LELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFME 611
V D L D + +C LEL + A+D K+G+ + L+ E +P FM
Sbjct: 990 VFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVNVSKELKAEKFPHFMG 1049
Query: 612 KQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFK 671
++ + Y S ++G++Y AV+ P + K + ++S+ D + + A +
Sbjct: 1050 RE--SSYHSTSILGQIYDAVESFQPENQSTKDAVPQACLRSWKD--RYDQYRSEMAAALQ 1105
Query: 672 YKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAVKSLKKEARAWF 731
+ G D Y AE+++ + I++ +
Sbjct: 1106 HG-------GETKDEYA----AEVIN--------------KYKQILYGAAEFE------- 1133
Query: 732 NKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHD----KLIE 787
ES ED++ +A A YHV Y + G R + +FPW + KL
Sbjct: 1134 ----ESPRKLEDIFDEALAIYHVTYEFAING-------ARVSYCNFPWRVAGRALCKLYT 1182
Query: 788 IKRGKQ 793
+K G++
Sbjct: 1183 VKLGEK 1188
>gi|170091852|ref|XP_001877148.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648641|gb|EDR12884.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1193
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 109/272 (40%), Gaps = 47/272 (17%)
Query: 360 LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFV 419
L+ G+ P P L L+ S++ RI + + D G L+ G++F
Sbjct: 676 LIDAGFTPQTCPVLRSKLEKIVKSSVKNYIKAYRIDVPMSASAFLVPDILGVLKPGEIFY 735
Query: 420 QCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRA------------- 466
+ +SRR N E ++ G V++ ++PC P D++ +RA
Sbjct: 736 K--SSRR-----NLRQTDGTETDIMLGDVLITRHPCKLPTDIQKVRASSQFMFVKHLYSP 788
Query: 467 ----VDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDY 522
VD P LHH+ D +V P G R + SG D DGD + EL+ P P+ +
Sbjct: 789 QWKAVDRPELHHLTDVIVLPTTGDRRAADLLSGGDYDGDKGLITNQPELVIPFINAPLHF 848
Query: 523 TPAPEK--------------------VLARDMTIEDVEEYFADYIVNDS-LGVICNAHVV 561
+ P VL+ D I + ++Y I + S +G N H
Sbjct: 849 SEPPSNMQKYFVRENEAVPAFLERTSVLSDDAKIHERQQYLLGAIRDTSVVGKYSNFH-- 906
Query: 562 HADLEPDKARSNQCLELAKLSTIAVDFSKTGV 593
A + + + LA + + +D +KTG+
Sbjct: 907 EAAIYTLGYTHPETIRLAYMFCMTLDGAKTGM 938
>gi|336376861|gb|EGO05196.1| hypothetical protein SERLA73DRAFT_68825 [Serpula lacrymans var.
lacrymans S7.3]
gi|336389793|gb|EGO30936.1| hypothetical protein SERLADRAFT_432597 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1094
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 8/174 (4%)
Query: 360 LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFV 419
LL G+ P P L L+ +++ R R+ + D TGTL G++ +
Sbjct: 610 LLDAGFTPGDCPILADKLKHIIDTSVDNYVQRYRVDVPMSCIAFMVPDPTGTLGPGEIHI 669
Query: 420 QCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
+ S + FL C + + E +V G V++ ++PC P D++ +RAV+ L H D +
Sbjct: 670 KSSHPK---FL---CEDGT-ETDIVLGDVLLTRHPCKLPTDVQKVRAVEKAELRHFKDVI 722
Query: 480 VFPAKG-KRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLAR 532
V P KG R + +G D DGD W E++ P + + Y+ P + A+
Sbjct: 723 VCPVKGTNRRFADLLAGGDYDGDKAIAIWQKEIVSPFKNADLKYSHPPADLPAQ 776
>gi|393232270|gb|EJD39854.1| hypothetical protein AURDEDRAFT_171128 [Auricularia delicata
TFB-10046 SS5]
Length = 1291
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 8/153 (5%)
Query: 360 LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFV 419
+L G+ P P L ++T ++ + + R+ I M D + L ++F+
Sbjct: 805 MLFSGFDPVTCPILRSHIRTVLRTSTEQYLKKFRVEITMSAEAMIISDTSLVLGENEIFL 864
Query: 420 QCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
S + LDNS + + G V+V +NP P D++ ++AV P L H D +
Sbjct: 865 SSS----KVLLDNSGRT----MNHLSGDVLVYRNPVRLPCDIQKVKAVYKPELDHYRDVI 916
Query: 480 VFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI 512
VF AKG R ++ +G D DGD V WD +++
Sbjct: 917 VFSAKGTRSLASKLAGGDYDGDTAVVIWDQDIV 949
>gi|224146916|ref|XP_002336366.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222834816|gb|EEE73265.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 320
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 76/162 (46%), Gaps = 24/162 (14%)
Query: 355 NVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLES 414
N++ ++ CG P EP+L L L+ +I + +MG D TG LES
Sbjct: 34 NIVATMIGCGI-PLEEPYLQCRLSILMKEEKKSLKG-GKIPVPESYYLMGTADPTGLLES 91
Query: 415 GQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHH 474
+V + LD G + G+V++ +NP LH GD+ +L+A V L
Sbjct: 92 DEVCI---------ILD---------CGQISGEVLIYRNPGLHFGDIHILKATYVRELED 133
Query: 475 MVD----CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI 512
V + FP KG R +E SG D DGD++FV + +L+
Sbjct: 134 FVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFVSRNPQLL 175
>gi|449541618|gb|EMD32601.1| hypothetical protein CERSUDRAFT_126709 [Ceriporiopsis subvermispora
B]
Length = 1473
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 7/161 (4%)
Query: 359 ELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVF 418
ELL G+ P +L L+ + R+ + D G LE GQ+
Sbjct: 984 ELLRAGFSPAQSQYLYDKLKMIVKLVVDRFVRDYRLPVAQSAEAFIVPDPYGVLEPGQIH 1043
Query: 419 VQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDC 478
+ + + L +S + E + G V+V +NPC D++ + AV P L D
Sbjct: 1044 FRAT-----QLLKDSITD--PEPDTLLGDVLVYRNPCRVASDVQKVTAVSHPKLTEYTDV 1096
Query: 479 VVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPP 519
+V P KG R + +G D+DGDV WD E++ Q PP
Sbjct: 1097 IVLPTKGDRSLASLLAGGDVDGDVCVCIWDPEIVSQFQLPP 1137
>gi|290980534|ref|XP_002672987.1| predicted protein [Naegleria gruberi]
gi|284086567|gb|EFC40243.1| predicted protein [Naegleria gruberi]
Length = 942
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 118/484 (24%), Positives = 204/484 (42%), Gaps = 102/484 (21%)
Query: 128 LRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVA--KYA 185
L GIV K+ L SNS +K +S +F + L +++ +G F + K A
Sbjct: 181 LSYGIVHEGHKYCLLGTSNSGLKGDSC-IFYNSTLLNLEILKQMLGTFEKAEEHGPRKVA 239
Query: 186 ARLGQSFGSSREAL-------HVDSSDIEIIPD---VEVED---------DGITYCFSDG 226
+R+G S G+S ++ SD + D + VED + Y F D
Sbjct: 240 SRVGLSMGTSTPSIVEWKQDDIQIISDDIAVTDGAGMAVEDFFEQVLENTYSVPYFFMDK 299
Query: 227 IGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVA-VDPT------------SSTKL 273
+ + + + KN SA Q+R G KGV+ V+ + S+TK+
Sbjct: 300 LFESDTKQGRLFEKN----FKNISAMQVRILGAKGVIQKVNKSMWAELLKKHKLPSNTKV 355
Query: 274 SLRKSMLKYKSEST---SLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGV-A 329
LR SM+K++ + +DIL ++ +NR +++ L + + EK +
Sbjct: 356 ILRNSMVKFEGNYSIYNKIDILNVARVHGGNINRNIMSCLLQMTTNEEEMEKLFKNFYET 415
Query: 330 QLDAILTD---PLKAHEALELMSSGENT--NVLKELLMCGY-----------KPDVEPFL 373
QL I+ + P L L SGE + ++ ++L+M + K ++E
Sbjct: 416 QLMEIVENKDNPEYLCNVL-LSQSGETSQESIARDLIMAEHSLDNYFISSVVKDNIESKF 474
Query: 374 LMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNS 433
M+ S+ L ++ + F+ MG DE+ TL+ +V + CS R
Sbjct: 475 ESMV-----SDKLSMKCKHPGFLSG----MGVYDESSTLKHDEVHIPCSKLIR------- 518
Query: 434 CNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS---LHHMVDCVVFPAKGKRPHT 490
S + ++ KV+V +NP + GD++ L+ V P L D +VF G P+
Sbjct: 519 ----SLDYAKID-KVLVYRNPLAYEGDIQCLKLVKHPPTEFLQSRRDVIVF---GHNPNY 570
Query: 491 NEC-------SGSDLDGDVYFVCWDHELI--------PPLQFPPMDYTPAPEKVLARDMT 535
+ +G DLDGD+Y + +D E++ P L + T K + ++
Sbjct: 571 KKVPEPLCYMAGGDLDGDLYEIIFDPEIVKLFDQNLKPKLNYNDGAATNKVTKTVKNSLS 630
Query: 536 IEDV 539
+EDV
Sbjct: 631 MEDV 634
>gi|302653254|ref|XP_003018456.1| RNA-directed RNA polymerase, putative [Trichophyton verrucosum HKI
0517]
gi|291182103|gb|EFE37811.1| RNA-directed RNA polymerase, putative [Trichophyton verrucosum HKI
0517]
Length = 1082
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 86/372 (23%), Positives = 151/372 (40%), Gaps = 61/372 (16%)
Query: 192 FGSSREALHVDSSDIEIIPDVEV-EDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPS 250
F R L ++ I + P+ + +DD SDG +S L + +A + + P+
Sbjct: 381 FTRIRLGLSRTTATITLRPEEFIYDDDPRQEKMSDGFAMMSRSLGKAIADSLCLS-KVPT 439
Query: 251 AFQIRYGGYKGV--VAVDP--------------------TSSTKLSLRK----SMLKYKS 284
FQ R G KG+ VA D ++++L ++ + L +
Sbjct: 440 IFQGRIAGAKGIWLVAKDDHDIHVKGLRHFETERGYWLVINASQLKVQPPPCDTSLTFDE 499
Query: 285 ESTSLDILANSKY-QPCFLNRQLITLLSTLGI-RDHVFEKKQREG---------VAQLDA 333
+ D+ + S+ QP LN Q + +L G+ ++++ E V D+
Sbjct: 500 HQLTFDVSSYSQPPQPVHLNIQFLMVLQDRGVNKEYILSLIPDEADKFYSEFLLVQNGDS 559
Query: 334 ILTDPL-------KAHEALELMSSGENTN---VLKELLMCGYKPDVEPFLLMMLQTFRAS 383
+ + + L L S TN L LL G+ P F+ + +
Sbjct: 560 VACRAWVRKNGGDASSQILALNESTFPTNHTAQLNGLLDAGFSPSNLAFVRRLFKENSLG 619
Query: 384 NLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGV 443
++ +I I + + D G LE GQ+ + L +S + + +L
Sbjct: 620 GFVQKLEALKIKIPHSTYVYCIPDPYGVLEEGQIHLD---------LGDSWEDGTTDLDG 670
Query: 444 VEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVY 503
++ V+VA+ P P D++ RAV P+L ++ +F KG P + SG D DGD
Sbjct: 671 ID--VLVARAPAHLPSDIQKCRAVFHPALRYLKHVAIF-TKGDVPLASLLSGGDYDGDEV 727
Query: 504 FVCWDHELIPPL 515
+VCWD E++ P
Sbjct: 728 WVCWDQEIVKPF 739
>gi|392597983|gb|EIW87305.1| hypothetical protein CONPUDRAFT_87147 [Coniophora puteana
RWD-64-598 SS2]
Length = 1075
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 94/426 (22%), Positives = 158/426 (37%), Gaps = 99/426 (23%)
Query: 181 VAKYAARLGQSFGSSREALHVDSSDIEIIPDV-EVEDDGIT-----YCFSDGIGKISAEL 234
++K++ R + +S + ++ + DV E G+ +DG G I+A
Sbjct: 354 ISKWSTRWALALSTSVPGMEFSPENVFYMDDVYSPEASGMKKAPAELTMTDGCGWINAAA 413
Query: 235 AEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSS-------TKLSLRKSMLKYKSEST 287
+ +N G + P+A Q R G KG+ + P + K+ +R S K S
Sbjct: 414 LTQLMRNMGLS-SRPTAIQARLAGAKGMWLLHPDPAEQLIDGPAKIWIRSSQNKIASPPA 472
Query: 288 S-----LDILANSKY-QPCFLNRQLI-------------TLLSTLGIRDHVFEKKQREGV 328
LD+LA S+ P L++Q I T L G+ V + Q +G
Sbjct: 473 DRGHLVLDLLAPSRVTHPSRLSQQTIVNMAHNGVPETVFTALMAAGLDREVQQLTQWDGP 532
Query: 329 AQLDAIL-------------------------------TDPLKAHEALELMSSGENTNVL 357
L A+ D + ++ + E+ +VL
Sbjct: 533 NALVAVWRAVERAGGVSFTRVRRRIAGQARALGLGRMRPDDRDSEAPADIDTDDEDAHVL 592
Query: 358 KELLMCG------YKPDVEPFLLMMLQT-FRASNLLELRTRTRIFI-------------- 396
+ G P V + +LQ+ FR NL L + R +
Sbjct: 593 SSGVEGGAAGEPAQPPSVYEAAMQLLQSGFRPQNLDVLYDKIRKIVTMVIDDYVKSLHIP 652
Query: 397 --QNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNP 454
++ A + D G L+ G+++ + S F D R +++G V+V +NP
Sbjct: 653 ILESAEAYI-VPDPYGVLKEGEIYFRSSDG----FKDPETGAR---FDILKGDVLVLRNP 704
Query: 455 CLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP 514
P D++ +RAV P L D ++FP G R + G GD V WD +L+ P
Sbjct: 705 TRLPSDVQKVRAVTYPELEKYYDVIIFPTCGARSLASYLGG----GDTVLVVWDKQLVQP 760
Query: 515 LQFPPM 520
P+
Sbjct: 761 FNSTPL 766
>gi|389740949|gb|EIM82139.1| hypothetical protein STEHIDRAFT_161484 [Stereum hirsutum FP-91666
SS1]
Length = 1302
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 84/405 (20%), Positives = 152/405 (37%), Gaps = 82/405 (20%)
Query: 179 KNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIV 238
+ +AK+AAR+ +S ++ + I + P++ I+ ++ +G E+
Sbjct: 454 QTIAKWAARIPLGLSNSVPGPKLECNQIRLEPEI------ISSSWNPSMGPKPPSEMEMT 507
Query: 239 AKNCGFTIYT--------------PSAFQIRYGGYKGVVAVDPT---------------S 269
CGF T P A Q+R G KG++ P+ S
Sbjct: 508 -DGCGFINQTALQELHSNKFWDSIPVAIQVRVAGNKGLLTRHPSNDANYLKYPCIWVRPS 566
Query: 270 STKLSLRKSMLKYKSESTSLDILANSKYQPCF-LNRQLITLLSTLGIRDHVFEKKQREGV 328
TK+ L ++ ++D+L S + +++++ + G+ + ++ RE +
Sbjct: 567 QTKIHYSDQDLAHEPAKRTIDVLRASHMRSGIQASKEVLVNFAENGVPHEILSRRMRESL 626
Query: 329 AQL--------------------DAILTDPLKAHEALELMSSG-----------ENTNVL 357
+L IL + A E G E +
Sbjct: 627 EELMEQLLQWDDMLQLYRLVFKEGGILGARMAREAAGEARVRGYRAYDNEDDDKEEDERI 686
Query: 358 KELLMC-----GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTL 412
E +C G+ P L L+ + + R ++ I + D TGTL
Sbjct: 687 SEETVCYFLDSGFTPQNNAILAEKLKEVITKAMKKRIARCKVEIPMSCSAWIIPDPTGTL 746
Query: 413 ESGQVFVQCSASRRREFLDNSCNNRSGELG-VVEGKVVVAKNPCLHPGDMRVLRAVDVPS 471
+ G++ ++ SA + + G+L V G V+V+++PC P D++ + AV
Sbjct: 747 KEGEIHIRSSAP--------NLKGQDGQLTEQVLGPVLVSRHPCKLPTDVQKVTAVYYSQ 798
Query: 472 LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ 516
L VD +VF KG R + D DGD WD E+ P +
Sbjct: 799 LEKYVDVIVFSTKGCRSLASMLGTGDYDGDKVEAVWDPEIAGPFR 843
>gi|168049572|ref|XP_001777236.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
gi|162671338|gb|EDQ57891.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
Length = 1040
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 142/650 (21%), Positives = 253/650 (38%), Gaps = 157/650 (24%)
Query: 128 LRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIR----------ESMGD--- 174
+R+GI++G +++ +F +S D F +R + A D + ES+ D
Sbjct: 324 VRDGILVGLRRYRLWSFKDSGKGD-----FRNRTKPYAKDYQRAVKCFFVCTESLADVDL 378
Query: 175 --------------------FRDIKNVAKYAARLGQSFGSSREA-LHVDSSDIEIIPDV- 212
+ + ++A+RL + S A L+ D +++ IPD+
Sbjct: 379 SDPNFKYFTRIEAARCHIMHIHAMPTMPRFASRLQLALSKSVTANLNWDEIEVKQIPDIL 438
Query: 213 --EVEDDGITYCFSDGIGKISAELAEIVAKN-CGFTIYTPSAFQIRYGG---YKGVVAVD 266
+++ G ++G +IS ++A ++ + C + P + G +KG+ A+
Sbjct: 439 SKTLDNSGKFMAHTEGTSEISPDVARLLPCSVCKGRVGEPKGYPTLVQGCLFWKGM-AIK 497
Query: 267 PTSSTKLSL-------RKSMLKYKSESTSLDILANSKYQ-----PCF------LNRQLIT 308
T L R SM+K S+ DI ++ C+ L++ LI
Sbjct: 498 GTWQVNHQLKGLQILYRPSMVKVTSDPILKDIPTIKSFEVVNTNTCYKLEEARLSQDLII 557
Query: 309 LLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPD 368
LLS + F + + + +L T E V +EL C PD
Sbjct: 558 LLSINNVPASFFLELVEKALEKLRTFFT---------------ERGQVFRELKSCS--PD 600
Query: 369 V---EPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMM--GCLDETGTLESGQVFVQCSA 423
+ L M++ SN +++ + Q+ A++ GCL L + S
Sbjct: 601 YAVGDQTLRMIMANIPMSNP-QMQNNLKKITQDKIALLRKGCL----PLPQSYYLMGTSD 655
Query: 424 SRRREFLDNSCNNRSGELGVVE------GKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVD 477
+ + L + E+ +V+ GKV+V KNP H GD+ + AV L+ V
Sbjct: 656 PTKEKVL------KPNEVAIVKNGEKVIGKVLVYKNPGKHWGDVHIFDAVWDERLNPYVG 709
Query: 478 ----CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFP--------PMDYTPA 525
+ F +G RP +E + SDL GD++++ P L + P+ P+
Sbjct: 710 PTKHAIFFSVRGNRPVVDEIANSDLCGDLFWLI--SLFTPSLPWKRIGEKINYPIGDGPS 767
Query: 526 PEKVLARDMTIED--VEEYFADYIVNDSLGVICNAH------VVHADLEPDKAR--SNQC 575
A + T+ D ++ F Y G+ AH + AD D+ S
Sbjct: 768 NLTSRALEYTLFDKFLKSRFTPYKPMSQAGIFWTAHMDRYLSLKDADEYSDELELISESL 827
Query: 576 LELAKLSTIAVDFSKTG------------VAATIPSGLRVEIYPDFME--KQDKTCYESQ 621
EL + A+D KTG ++ +P L + +P F++ + ++T Y S
Sbjct: 828 EELIDIFYRALDADKTGEELCLHRHTFAWMSVKLPRRLEPDCFPHFLKEIQTNRTYYTST 887
Query: 622 RVIGKLY----RAVKDIA-PPTATIKSFTKEVAMQSYDTDMEVDGFEDYI 666
++G++Y R V I P TI +YD E F+ Y+
Sbjct: 888 SILGQIYDMVVRNVDGIGCKPEETI----------AYDPKFEYGRFDRYM 927
>gi|242207403|ref|XP_002469555.1| predicted protein [Postia placenta Mad-698-R]
gi|220731359|gb|EED85204.1| predicted protein [Postia placenta Mad-698-R]
Length = 1264
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 10/177 (5%)
Query: 351 GENTNV---LKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLD 407
GE T+V + ELL G++P P L L+ A + + +I + D
Sbjct: 781 GEPTSVSAAVLELLQAGFQPLKLPLLYEKLRKVVADRIEDYIRNYKIAVPRSAEAFIIPD 840
Query: 408 ETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAV 467
G LE ++ + + + + +++ ++ G V++ +NP P D+R ++AV
Sbjct: 841 PYGVLEESEIHFKSTQNLQDPLEESNPT-------IITGDVLIYRNPTRVPSDVRKVKAV 893
Query: 468 DVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTP 524
P L V+ +V P KG R N +G D+DGDV +D +L+ + P++ P
Sbjct: 894 SHPKLDKYVNVIVLPVKGSRSLANILAGGDVDGDVCTCIFDPDLVDSFENSPINDPP 950
>gi|299747734|ref|XP_001837224.2| hypothetical protein CC1G_00360 [Coprinopsis cinerea okayama7#130]
gi|298407654|gb|EAU84841.2| hypothetical protein CC1G_00360 [Coprinopsis cinerea okayama7#130]
Length = 1039
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 11/156 (7%)
Query: 360 LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFV 419
LL G+ P P L L+ + + L RI + M D+ G L+ G++F
Sbjct: 531 LLQSGFHPGFCPVLAEKLKAVIRTRVSRLTHSYRIEVPMSCMAMIVPDKRGILKEGEIFF 590
Query: 420 QCSASRRREFLDNSCNNRSGE-LGVVEGKVVVAKNPCLHPGDMR--VLRAVDVPSLHHMV 476
+ S R+ LD R GE ++ G V++ + PC P D++ +AVD P LH +V
Sbjct: 591 RSS---HRDLLD-----RDGEKTDIITGDVLITRYPCKLPTDIQKASCKAVDHPGLHDLV 642
Query: 477 DCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI 512
++ KG R + G D DGD + W ++
Sbjct: 643 GVIILSTKGTRRAADFIGGGDYDGDKAMIIWHPPMV 678
>gi|225557198|gb|EEH05485.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus G186AR]
Length = 1388
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 131/330 (39%), Gaps = 55/330 (16%)
Query: 223 FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSST--------KLS 274
+DG +S L VA G + P+ FQ R G KGV VD S L
Sbjct: 695 MNDGCALMSKSLGMAVASALGLDGH-PAIFQARISGAKGVWMVDLDDSRFKTGDRGFWLQ 753
Query: 275 LRKSMLKYKS----ESTSLD--------ILANSKYQPCFLNRQLITLLSTLGIR-DHVFE 321
+ +S LK ++ +D + + P LN QL+ +L GIR DH+
Sbjct: 754 ITQSQLKIHPAPPHDTKPMDDTQLTFEVVQWSRPLSPASLNMQLLNILQHGGIRNDHIRN 813
Query: 322 KKQREGVAQLDAILTDPLKAH--------EALELMSSGENTNVLKE-------------- 359
++E + D L L + + ++ +++G + K
Sbjct: 814 LIKQEMSSFYDEFLRTLLCSSGVECRSWLQKMKWITNGSSKRQPKRTDNFFPSQYAEQAI 873
Query: 360 -LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVF 418
LL G+ P P+L + + L L+ + +I + D G L +V
Sbjct: 874 MLLDAGFLPLKLPYLTKIFRRLLQDYLDNLK-KLKITVSQSTFAYCVADPFGVLRPDEVH 932
Query: 419 VQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDC 478
+ S RE+ S EL ++ V++A+ P D++ R+V L HM D
Sbjct: 933 LGFS----REWEHGSAGT---ELHDID--VLLARLPAHLATDIQKRRSVYKNELRHMKDV 983
Query: 479 VVFPAKGKRPHTNECSGSDLDGDVYFVCWD 508
+VFP G P + SG D DGD +VCWD
Sbjct: 984 IVFPTTGDTPLASLLSGGDYDGDQCWVCWD 1013
>gi|325093828|gb|EGC47138.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H88]
Length = 1387
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 85/330 (25%), Positives = 131/330 (39%), Gaps = 55/330 (16%)
Query: 223 FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSST--------KLS 274
+DG +S L VA G + P+ FQ R G KGV VD S L
Sbjct: 695 MNDGCALMSKSLGMAVASALGLDGH-PAIFQARISGAKGVWMVDLDDSRFKTGDRGFWLQ 753
Query: 275 LRKSMLKY----KSESTSLD--------ILANSKYQPCFLNRQLITLLSTLGIR-DHVFE 321
+ +S LK ++ +D + + P LN QL+ +L GIR DH+
Sbjct: 754 ITQSQLKIYPAPPHDTKPMDDTQLTFEVVQWSRPLSPASLNMQLLNILQHGGIRNDHIRN 813
Query: 322 KKQREGVAQLDAIL-----TDPLKAHEALELMSSGENTNVLKE----------------- 359
++E + D L + ++ L+ M N + ++
Sbjct: 814 LIRQEMSSFYDEFLRTLLCSSGVECRSWLQKMKWITNESSKRQSKRTDNFFPPQYAEQAI 873
Query: 360 -LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVF 418
LL G+ P P+L + + L L+ + +I + D G L +V
Sbjct: 874 MLLDAGFLPLKLPYLTKIFRRLLQDYLDNLK-KLKITVSQSTFAYCVADPFGVLRPDEVH 932
Query: 419 VQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDC 478
+ S RE+ S S EL ++ V++A+ P D++ R+V L HM D
Sbjct: 933 LGFS----REWEHGSA---STELHDID--VLLARLPAHLATDIQKRRSVYKNELRHMKDV 983
Query: 479 VVFPAKGKRPHTNECSGSDLDGDVYFVCWD 508
+VFP G P + SG D DGD +VCWD
Sbjct: 984 IVFPTTGDTPLASLLSGGDYDGDQCWVCWD 1013
>gi|240277746|gb|EER41254.1| RNA-directed RNA polymerase [Ajellomyces capsulatus H143]
Length = 1317
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 85/330 (25%), Positives = 131/330 (39%), Gaps = 55/330 (16%)
Query: 223 FSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSST--------KLS 274
+DG +S L VA G + P+ FQ R G KGV VD S L
Sbjct: 625 MNDGCALMSKSLGMAVASALGLDGH-PAIFQARISGAKGVWMVDLDDSRFKTGDRGFWLQ 683
Query: 275 LRKSMLKY----KSESTSLD--------ILANSKYQPCFLNRQLITLLSTLGIR-DHVFE 321
+ +S LK ++ +D + + P LN QL+ +L GIR DH+
Sbjct: 684 ITQSQLKIYPAPPHDTKPMDDTQLTFEVVQWSRPLSPASLNMQLLNILQHGGIRNDHIRN 743
Query: 322 KKQREGVAQLDAIL-----TDPLKAHEALELMSSGENTNVLKE----------------- 359
++E + D L + ++ L+ M N + ++
Sbjct: 744 LIRQEMSSFYDEFLRTLLCSSGVECRSWLQKMKWITNESSKRQSKRTDNFFPPQYAEQAI 803
Query: 360 -LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVF 418
LL G+ P P+L + + L L+ + +I + D G L +V
Sbjct: 804 MLLDAGFLPLKLPYLTKIFRRLLQDYLDNLK-KLKITVSQSTFAYCVADPFGVLRPDEVH 862
Query: 419 VQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDC 478
+ S RE+ S S EL ++ V++A+ P D++ R+V L HM D
Sbjct: 863 LGFS----REWEHGSA---STELHDID--VLLARLPAHLATDIQKRRSVYKNELRHMKDV 913
Query: 479 VVFPAKGKRPHTNECSGSDLDGDVYFVCWD 508
+VFP G P + SG D DGD +VCWD
Sbjct: 914 IVFPTTGDTPLASLLSGGDYDGDQCWVCWD 943
>gi|429863502|gb|ELA37949.1| RNA-dependent RNA polymerase, partial [Colletotrichum
gloeosporioides Nara gc5]
Length = 989
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 140/331 (42%), Gaps = 48/331 (14%)
Query: 219 ITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKG--VVAVDPTSS-----T 271
I +DG+G++S LA V + PSA Q R G KG ++ V+ T S T
Sbjct: 582 IGQVMNDGVGRMSLSLARKVRDVLELS-DVPSAIQGRLGSAKGMWIIDVEDTGSDIWIET 640
Query: 272 KLSLRKSMLKY-KSESTSLDIL----------ANSKYQPCFLNRQLITLLSTLGIRDHVF 320
S RK + E +L+I N ++ P +R + + D+V
Sbjct: 641 WPSQRKWNCDFLHQEHRTLEIKDFVAEPRSANLNIQFLPILEDRAKDKQIMRKVVGDNVL 700
Query: 321 EKKQREGVAQLDAILTDPLK----------------AHEALELMSSGENTN--VLKELLM 362
+ E A +AI PL+ AH ++ ++ + L L
Sbjct: 701 RQLSDELEALRNAI-KHPLQFRKWVDENSTARKKRLAHSSVPFLAGLPESKEEQLSYLGD 759
Query: 363 CGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCS 422
G++P + F+ M+ ++ + + I I N + +D G LE +V V S
Sbjct: 760 GGFEPTKQKFMQDMMWKLQSKKCENVTKKMSIRIPNSAYLYMVVDFWGILEENEVHVCFS 819
Query: 423 ASRRREFLDNSCNNRSGELGVVEG-KVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVF 481
++ R E +S ++ G V+VA++P D++ ++AV P L + + +VF
Sbjct: 820 STFRTEGFSDS---------MLHGCDVLVARSPAHLVSDIQRVKAVFKPELRALKNVIVF 870
Query: 482 PAKGKRPHTNECSGSDLDGDVYFVCWDHELI 512
PAKG ++ SG D DG +VCW+ ++
Sbjct: 871 PAKGDVALADKLSGGDYDGGRAWVCWEPAIV 901
>gi|393224586|gb|EJD32918.1| hypothetical protein AURDEDRAFT_177990 [Auricularia delicata
TFB-10046 SS5]
Length = 655
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 17/161 (10%)
Query: 359 ELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCL--DETGTLESGQ 416
+LL +KP FL L+ SNL ++ + C D TGTLE G+
Sbjct: 188 DLLKASFKPQDTAFLHRTLKEVIRSNLQRK-------VEGYHVDLPCSASDPTGTLEPGE 240
Query: 417 VFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMV 476
V+ + S LD+ + + V+EG V+ ++PC+ P D++ +RAV+ L
Sbjct: 241 VYFRPSVP----LLDS----QGYQFDVLEGDCVMGRHPCMLPSDLQKVRAVNRAELGQYR 292
Query: 477 DCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQF 517
D VV +G+R + +G D DGD + W ++ P +
Sbjct: 293 DVVVCATRGRRSLASLLAGGDYDGDKVVITWYAPIVTPFEM 333
>gi|299747708|ref|XP_001837206.2| RNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
gi|298407644|gb|EAU84823.2| RNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
Length = 1221
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 67/141 (47%), Gaps = 18/141 (12%)
Query: 387 ELRTRTRIFIQN------GRAMMGC-----LDETGTLESGQVFVQCSASRRREFLDNSCN 435
+L+ R FI+N A+M C D G LE G+++ + S+ R L
Sbjct: 692 KLKHIIRRFIKNISKTYRMTALMSCSAWIIPDTRGVLEEGEIYFKSSS---RNLL-RPNG 747
Query: 436 NRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSG 495
+ EL G V+V +NP P D++ RAV P L +VD VV KG R + +G
Sbjct: 748 TLTDEL---IGDVLVTRNPSKLPTDVQKWRAVHRPELRDLVDVVVLSTKGARRAADWLAG 804
Query: 496 SDLDGDVYFVCWDHELIPPLQ 516
D DGD V WD +++ P +
Sbjct: 805 GDYDGDKVTVIWDPKIVDPFK 825
Score = 43.1 bits (100), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 171 SMGDFRDIKN---------VAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITY 221
S DF D N +AK+A+R +S L + +I D+E + G
Sbjct: 406 SFFDFLDFHNPMDATTNQKMAKWASRFALGLSNSVPGLLLKPENIRFKDDIEHPETG--S 463
Query: 222 CFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVD 266
+DG G +S +A + +N G+ Y P+A Q+R G KG++ D
Sbjct: 464 VMTDGAGSMSRMVATQLHRNLGWD-YRPTAIQVRVFGSKGLLVDD 507
>gi|402224034|gb|EJU04097.1| hypothetical protein DACRYDRAFT_14289 [Dacryopinax sp. DJM-731 SS1]
Length = 1239
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 18/134 (13%)
Query: 412 LESGQVFVQCSASRRREFLDNSCNNRSG-ELGVVEGKVVVAKNPCLHPGDMRVLRAVDVP 470
L+ G++F++ S R ++R+G VV G V++ ++PC P D+++++AVD P
Sbjct: 881 LKPGEIFLRMSRER--------VDSRTGMATDVVVGDVLIVRHPCKLPSDIQLVKAVDCP 932
Query: 471 SLHHMVDCVVFPAKGKRPHT--NECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEK 528
L H D ++ +P + ++ +G D DGD + WD +LI + PA ++
Sbjct: 933 ELRHWKDVIITSVDRSQPRSLLSKLAGGDYDGDTVVIYWDKDLI-------AGFKPASDE 985
Query: 529 VLARDMTIEDVEEY 542
L ++D EY
Sbjct: 986 CLDPPDRVKDCFEY 999
>gi|218187686|gb|EEC70113.1| hypothetical protein OsI_00772 [Oryza sativa Indica Group]
Length = 1155
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 92/378 (24%), Positives = 156/378 (41%), Gaps = 49/378 (12%)
Query: 261 GVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANS-KYQPCFLNRQLITLLSTLGIRDHV 319
GV +V+ + K L S +I++ S + + +R LITLL G+ +
Sbjct: 656 GVRSVNSSEIVSARNAKKSLSGVQSVNSFEIVSTSNRPRRTLTSRFLITLLCYGGVPEEY 715
Query: 320 FEKKQREGVAQLDAILTDPLKAHEALEL-MSSGENTNVLKELLMCGYKPDVEPFLLMMLQ 378
F + + + + D +AL + S + + + ++ P E +L L
Sbjct: 716 FLELLQSAIEGAENACYD---YEDALRIAFSYADMEDSMSARMILSGIPLEESYLQHRLD 772
Query: 379 TFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRS 438
F A + + +I I +M D TGTL +V V L+N
Sbjct: 773 -FMAQQERKGIKQGKIPIDECYYLMDTTDPTGTLRPNEVCV---------ILEN------ 816
Query: 439 GELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLH-----HMVDCVVFPAKGKRPHTNEC 493
G G V+V K+P LH GD+ VL+A + L + ++FP G R +E
Sbjct: 817 ---GQFSGDVLVYKHPGLHFGDIHVLKATYIRDLEKEYVGYAKYAILFPISGPRSLADEM 873
Query: 494 SGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEE------YFADYI 547
+ SD DGD+Y+V + +L+ + P + A + + +D E F +++
Sbjct: 874 ANSDFDGDIYWVSKNPKLLEHFK-PSEPWVQAIKPKKTKQKKPQDCNESKLERLLFHEFL 932
Query: 548 VND-----SLGVICNAHVVHAD-LEPD-------KARSNQCLELAKLSTIAVDFSKTGVA 594
+LG ++ + + D L D K + ++L L +A+D KTG
Sbjct: 933 KTRFTPSFALGTAADSWLAYMDRLLTDSLDEIEKKLIEEKMIKLVDLYYLALDAPKTGNK 992
Query: 595 ATIPSGLRVEIYPDFMEK 612
IPS L V+ YP FM +
Sbjct: 993 VNIPSDLMVKQYPHFMGR 1010
>gi|313243221|emb|CBY39877.1| unnamed protein product [Oikopleura dioica]
Length = 265
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 87/190 (45%), Gaps = 35/190 (18%)
Query: 168 IRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGI 227
I + GDF IK V KYAARLG ++R A ++ ++ D + G F+DG
Sbjct: 26 IWKYFGDFEKIKTVPKYAARLGLLISATRHAEFIEDGKWQLEKD--IVHHGCN--FTDGC 81
Query: 228 GKISAELAE--IVAKNCGF-----TIYTPSAFQIRYGGYKGVVAVDPT---SSTKLSLRK 277
G++S +LA+ + K+C + PS QIR+ G KG++ DP+ S + LR+
Sbjct: 82 GRMSTQLAQRFTLNKHCANRYKHQSFEVPSIVQIRFMGCKGILVHDPSLDFSGKDVILRE 141
Query: 278 SM-------------LKYKSESTS-----LDILANSKYQPCF---LNRQLITLLSTLGIR 316
S LKY + L I + +P LN+Q + +LS LGI
Sbjct: 142 SQKKFEWNFNTIKGRLKYTEKKQGRTGRLLGICRGGESKPFVFGRLNKQFVLVLSALGIP 201
Query: 317 DHVFEKKQRE 326
+ + Q E
Sbjct: 202 NTTLLEIQNE 211
>gi|297832166|ref|XP_002883965.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329805|gb|EFH60224.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 934
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 91/206 (44%), Gaps = 24/206 (11%)
Query: 450 VAKNPCLHPGDMRVLRAVDVPSLHHMVD----CVVFPAKGKRPHTNECSGSDLDGDVYFV 505
V +NP LH GD+ VL+A V +L V V FP KG R +E +G D DGD+YF+
Sbjct: 584 VYRNPGLHFGDIHVLKATYVKALEDYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMYFI 643
Query: 506 CWDHELIPPLQ-FPPMDYTPAPEKVLARDMTIEDVEEYF----------ADYIVNDSLGV 554
+ +L+ + P + P K+ + E EE A + D +G+
Sbjct: 644 SRNPKLLEYFKPSEPWVSSSKPSKIYSGRKPSELSEEELEEELFKMFLKARFCKRDVIGM 703
Query: 555 ICNAHVVHAD----LEPDKA-----RSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEI 605
+ + D L + A R L+L + A+D K G +P L ++
Sbjct: 704 AADCWLGIMDPLLTLGDESAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKN 763
Query: 606 YPDFMEKQDKTCYESQRVIGKLYRAV 631
+P +ME+ K + S ++G ++ V
Sbjct: 764 FPHYMERDPKRDFRSTSILGLIFDTV 789
>gi|170084677|ref|XP_001873562.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164651114|gb|EDR15354.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1268
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 17/172 (9%)
Query: 359 ELLMCGYKPDVEPFL-----LMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLE 413
EL+ G+ P L M+ QT +S + RI I+ D TG LE
Sbjct: 797 ELIQAGFHPSQCKILQDKIKFMVQQTINSS-----VEKYRIPIKESTGGYIVADPTGLLE 851
Query: 414 SGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLH 473
GQ++ + S + + + + V++G+VV+ + P P DM+ + AVD+P L
Sbjct: 852 EGQIYYRSS-------VPMTDPDTEMDYFVLQGEVVLGRYPIRLPSDMQKVTAVDIPELF 904
Query: 474 HMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPA 525
+ D ++ KGK + SG D DGD V D ++ + P+ P+
Sbjct: 905 NWPDVIIVSTKGKFSLASLLSGGDQDGDELLVIKDKLIVDSFKNQPLTVIPS 956
>gi|302883308|ref|XP_003040555.1| hypothetical protein NECHADRAFT_106579 [Nectria haematococca mpVI
77-13-4]
gi|256721441|gb|EEU34842.1| hypothetical protein NECHADRAFT_106579 [Nectria haematococca mpVI
77-13-4]
Length = 936
Score = 62.8 bits (151), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 435 NNRSGELGVVEG-KVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNEC 493
N+ + EL +EG V+V + P P D++ ++AV P L H+ D ++FP G +P +
Sbjct: 500 NDGTRELHDLEGMDVLVGRCPAHLPSDIQKVKAVFRPELRHLKDIIIFPCTGDKPLAQKL 559
Query: 494 SGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAP 526
SG + DG+ ++CWD +++ F +D P P
Sbjct: 560 SGGNYDGNRAWICWDPDMVN--NFEGVDIPPKP 590
>gi|406700852|gb|EKD04014.1| RNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
8904]
Length = 1087
Score = 62.4 bits (150), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 80/346 (23%), Positives = 134/346 (38%), Gaps = 74/346 (21%)
Query: 233 ELAEIVAKNCGFTI-------------YTPSAFQIRYGGYKGVVAV-----DPTSSTKLS 274
E EI++ CG + P + Q+R GG KGV+++ + +
Sbjct: 443 EACEILSDGCGLMSQKILHHPFFADLRWPPCSVQMRLGGSKGVLSLMSREQEEEYDADVV 502
Query: 275 LRKSMLKYKSES--------TSLDILANSKYQ-PCFLNRQLITLLSTLGIRDHVFEKKQR 325
LR SM+K KS + +LD+L + C L+ + I ++ G+ V K
Sbjct: 503 LRPSMIKSKSAAGFSDDPSVLTLDVLKVDGLKVGCNLSSEAIIIMEDRGVPPDVLIAKAE 562
Query: 326 EGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLM--------------------CGY 365
++ L L + GEN + +++ L+ G
Sbjct: 563 LEFEKIRESL---------LPVPHPGENEDDVRQRLLHAVYTLGGVGSEREKRRCRQLGK 613
Query: 366 KPDVEPFLLMMLQ-------TFRASNLLELRTRT--RIFIQNGRAMMGCLDETGTLESGQ 416
V L Q T A L R + ++ + + + D G L+ +
Sbjct: 614 STKVAGLSLESTQQDEYEEDTSVAEKSLTDRAVSDFKLPVDQSLSALIVPDTLGVLKPNE 673
Query: 417 VFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMV 476
+++ S++ L N R + VEG V++ ++PC P D+R +RAV L H+
Sbjct: 674 IYIAPSSAA----LVNPSTMRP--MSCVEGDVLIFRSPCKLPTDVRKMRAVYHSKLKHLQ 727
Query: 477 DCVVFPAKGKRPHTNECS---GSDLDGDVYFVCWDHELIPPLQFPP 519
DC+V A + S G D DGD V WD +L+ P + P
Sbjct: 728 DCIVMSADSAMCTASPASLLAGGDYDGDTATVIWDEDLVKPFRNAP 773
>gi|328861348|gb|EGG10451.1| hypothetical protein MELLADRAFT_103030 [Melampsora larici-populina
98AG31]
Length = 1075
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/350 (25%), Positives = 145/350 (41%), Gaps = 57/350 (16%)
Query: 218 GITYCFSDGIGKISAELA-EIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTS-----ST 271
G +DG IS A +I + N PS +Q R G KG+ +DP S +T
Sbjct: 326 GKAEIMTDGAAAISRVAALQISSANNLQPDILPSVYQGRIGFAKGLWYLDPNSNPLDTTT 385
Query: 272 KLSLRKSMLKYKSESTSLDILANSKYQPCF----LNRQLITLLSTLGIRDHVFEKKQREG 327
+ +R + K + L +Y L RQ + +LS+ GI + VFE+ E
Sbjct: 386 WIEIRDTQWKAEPHVGFLYHFNLCRYSVAVNSTTLGRQNLRVLSSRGIPNEVFEELLEEA 445
Query: 328 V-AQLDAILT-DPLKAHEALELMSSGENTNVLKE--LLMCGYKPDVE--PFLLMMLQTFR 381
+ + L+A T DP+ E + +S+ + L+ LL G +E P L +TF
Sbjct: 446 IRSSLEAFDTPDPM---ELIHTLSNESAISCLRTRTLLTHGGASRIEHDPTLN---RTFD 499
Query: 382 ASNLLELRT------RTRIF-IQNGRAM--MGCLDETGTLESGQVFVQCSASRRREFLDN 432
++ E ++ R F +Q A+ + C+ E G S ++ V+ R E L
Sbjct: 500 QDSVPEKKSSDQTSDRLHPFSLQPADAIEQLLCMLEAGFPVSNRIVVEKLRKVRIEKLTK 559
Query: 433 -----------------SC--------NNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAV 467
SC ++ G++ G ++ ++PC P D+R ++ V
Sbjct: 560 MLMVANIKRRLSVPLSLSCYVYAIPDPDSTGTRHGILAGPALIWRSPCAAPIDVRKIQLV 619
Query: 468 DVPSLHHM-VDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ 516
L + D +V +G R + SG D DGD V WD L+ P Q
Sbjct: 620 ANEHLQRVYFDVIVCSTRGDRAMLSMLSGGDYDGDQVSVTWDKRLVDPFQ 669
>gi|401882100|gb|EJT46373.1| RNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
2479]
Length = 1106
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 84/360 (23%), Positives = 142/360 (39%), Gaps = 83/360 (23%)
Query: 233 ELAEIVAKNCGFTI-------------YTPSAFQIRYGGYKGVVAV-----DPTSSTKLS 274
E EI++ CG + P + Q+R GG KGV+++ + +
Sbjct: 443 EACEILSDGCGLMSQKILHHPFFADLRWPPCSVQMRLGGSKGVLSLMSREQEEEYEADVI 502
Query: 275 LRKSMLKYKSES--------TSLDILANSKYQ-PCFLNRQLITLLSTLGIRDHV------ 319
LR SM+K KS + +LD+L + C L+ + I ++ G+ V
Sbjct: 503 LRPSMIKSKSAAGFSDDPSVLTLDVLKVDGLKVGCNLSSEAIIIMEDRGVPPDVLIAKAE 562
Query: 320 --FEK------------------KQR--EGVAQLDAILTDPLKAH----------EALEL 347
FEK +QR V L + ++ K L L
Sbjct: 563 LEFEKIRENLLPVPHPGENEDDVRQRLLHAVYTLGGVGSEREKRRCRQLGKSTKVAGLSL 622
Query: 348 MSSG-----ENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAM 402
S+ E+T+V + G+ PD ++ L+ S + ++ + +
Sbjct: 623 ESTQQDEHEEDTSVAEN----GFLPDESVWMSQKLKFMVRSLTDRAVSDFKLPVDQSLSA 678
Query: 403 MGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMR 462
+ D G L+ ++++ S++ L N R + VEG V++ ++PC P D+R
Sbjct: 679 LIVPDTLGVLKPNEIYIAPSSAT----LVNPRTMRP--MSCVEGDVLIFRSPCKLPTDVR 732
Query: 463 VLRAVDVPSLHHMVDCVVFPAKGKRPHTNECS---GSDLDGDVYFVCWDHELIPPLQFPP 519
+RAV L H+ DC+V A + S G D DGD V WD +L+ P + P
Sbjct: 733 KMRAVYHSKLKHLQDCIVMSADSAMCTASPASLLAGGDYDGDTATVIWDEDLVKPFRNAP 792
>gi|409051063|gb|EKM60539.1| hypothetical protein PHACADRAFT_82474, partial [Phanerochaete
carnosa HHB-10118-sp]
Length = 639
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 16/146 (10%)
Query: 407 DETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRA 466
D TG LE+G+++V+ SA S + ++ E V+ G V++ ++PC P D++ ++A
Sbjct: 409 DPTGVLEAGEIYVESSAPLL------SADGKT-EADVIVGDVLITRHPCKVPSDVQKVKA 461
Query: 467 VDVPSLHHMVDCVVFPAKGKRPHT--------NECSGSDLDGDVYFVCWDHELIPPLQFP 518
V+ L D VV KG R T + G D DGD V W+ EL+ Q
Sbjct: 462 VNRRELRGYKDLVVVSTKGHRVQTQLLDRHLLSMLGGGDYDGDRVQVFWNPELVDGFQPA 521
Query: 519 PMDYTPAPEKV-LARDMTIEDVEEYF 543
+ P+ V L + E VE +
Sbjct: 522 DPAFATPPKSVELGLEKNTESVESFL 547
>gi|325190799|emb|CCA25290.1| RNAdependent RNA Polymerase1 (RDR1) putative [Albugo laibachii
Nc14]
Length = 557
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 97/241 (40%), Gaps = 25/241 (10%)
Query: 552 LGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFME 611
LG+ NAH+ D + ++LA + ++ VD + + L IYPDFME
Sbjct: 7 LGIASNAHLARCDYSDKGSFDPDSMKLAWICSLQVDGHRAEEHLQVIRDLSPPIYPDFME 66
Query: 612 KQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFEDYITDAFK 671
+ + + S + +G LYR+ K + + + + Q + + V + Y
Sbjct: 67 SE-RFSHRSSKSLGTLYRSSKILTLLDHSCLKYDE----QHVNDEFMVGNYTKYAALTKI 121
Query: 672 YKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDK------KRDLEAIIFAVKSLKK 725
+Y LM YG E E+ SG I++ + +R +A V+ +K
Sbjct: 122 LYRQYSRSTAALMRMYGAVLEGELASGLIIKTDDLYRTDYFRFGERCRDAFFKNVRQYRK 181
Query: 726 EARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHDKL 785
NE + ASAWY+ + + G NR FLSF W I D+L
Sbjct: 182 IFSVLCGTLNEFERCE-----LASAWYYAVFSC-------KNGQNR--FLSFGWIIMDEL 227
Query: 786 I 786
+
Sbjct: 228 L 228
>gi|302673317|ref|XP_003026345.1| expressed protein [Schizophyllum commune H4-8]
gi|300100027|gb|EFI91442.1| expressed protein [Schizophyllum commune H4-8]
Length = 984
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 19/154 (12%)
Query: 359 ELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRT-----RIFIQNGRAMMGCL--DETGT 411
ELL G+KP +L + + + +L++ ++ R+ + + R + + D G
Sbjct: 507 ELLQAGFKPQECEYLRIKM-----AKVLDMVCQSAVEDYRVPVPDSRGLNAFVVPDPLGV 561
Query: 412 LESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS 471
L ++F S S F+D + VEG+V+V + P P D+R ++AV+ P+
Sbjct: 562 LNEDEIFYMPSPS----FMDP---KEQVMVQAVEGEVIVGRYPIRLPSDLRKVKAVNRPA 614
Query: 472 LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFV 505
LH + ++ P G+R + SG D DGD+ F+
Sbjct: 615 LHQYTNVILVPTVGERSLVSLLSGGDCDGDILFM 648
>gi|324526384|gb|ADY48663.1| RNA-dependent RNA polymerase 2 [Ascaris suum]
Length = 156
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 71/156 (45%), Gaps = 31/156 (19%)
Query: 186 ARLGQSFGSSREA----LHVD-SSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAK 240
AR+GQ F ++E LH + +II ++ G Y FSDG G++S E A+ +A
Sbjct: 2 ARMGQCFTQAKECSIKLLHRRYNKTFDIIGGMD--SSGEPYTFSDGCGRLSPEFAQRIAD 59
Query: 241 NCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLS-----------------------LRK 277
+ PS FQIR+ G KGVV+VDP + + S R
Sbjct: 60 DLHLGKCVPSCFQIRFRGIKGVVSVDPWLTERASWATEHNIADNMENYNKKNKLYMLFRP 119
Query: 278 SMLKYKSE-STSLDILANSKYQPCFLNRQLITLLST 312
S K+ + S ++I+ S P LNR I +L T
Sbjct: 120 SQDKFHAPLSHKIEIVKYSSPTPVCLNRPYIAILLT 155
>gi|110738636|dbj|BAF01243.1| hypothetical protein [Arabidopsis thaliana]
Length = 339
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 90/198 (45%), Gaps = 26/198 (13%)
Query: 459 GDMRVLRAVDVPSLHHMVD----CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPP 514
GD+ +L+A V +L V V FP KG R +E +G D DGD+YF+ + EL+
Sbjct: 2 GDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLEN 61
Query: 515 LQF--PPMDYTP-------------APEKVLARDMTIEDVEEYFADYIVN---DSLGVIC 556
+ P + TP +PE++ + + A ++ DS I
Sbjct: 62 FKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIM 121
Query: 557 NAHVVHAD--LEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQD 614
+ ++ D E + LEL + A+D K G +P+ L+ +I+P +ME+
Sbjct: 122 DRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERDK 181
Query: 615 KTCYESQRVIGKLYRAVK 632
K ++S ++G ++ VK
Sbjct: 182 K--FQSTSILGLIFDFVK 197
>gi|328855319|gb|EGG04446.1| hypothetical protein MELLADRAFT_117081 [Melampsora larici-populina
98AG31]
Length = 789
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 122/296 (41%), Gaps = 35/296 (11%)
Query: 222 CFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLK 281
+DG IS A+ + + G + PSAFQ R KGV + S + ++
Sbjct: 342 VMTDGAAAISKFAAQKIKDSLGMN-FLPSAFQARIMKAKGVWYLSSHDSIEEDEESMWIE 400
Query: 282 YKSESTSLDILANSKYQ-PCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLK 340
+ D+ P L R S HV ++ + TD LK
Sbjct: 401 IRDSQWKADVSYGHDVDIPFNLVRS-----SRHAKTGHVLASRKVPV-----STFTDLLK 450
Query: 341 AHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLE-LRTRTRIFIQNG 399
LEL++ + L L++ Y ++ + + T +L E L R I +
Sbjct: 451 ----LELLTVFNSLTDLNHLMVTSY---LDNHAEVHINTEDVEDLSERLSRRPLDAITSV 503
Query: 400 RAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPG 459
AM D TGTL+ G+VF+Q S F+D + + + V+ G+ +VA++PC+HP
Sbjct: 504 YAMP---DPTGTLKEGEVFLQLS-----HFVDQ---DTALPIQVLRGECIVARSPCVHPC 552
Query: 460 DMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPL 515
D R + AV +L D +V G+R + SG GD V WD + P
Sbjct: 553 DARKVTAVANQNLVRYDDVLVCSVLGERSLLDYLSG----GDTVTVIWDPHITEPF 604
>gi|313237377|emb|CBY12568.1| unnamed protein product [Oikopleura dioica]
Length = 316
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 14/126 (11%)
Query: 168 IRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGI 227
I + GDF IK V KYAARLG ++R A ++ ++ D + G F+DG
Sbjct: 26 IWKYFGDFEKIKTVPKYAARLGLLISATRHAEFIEDGKWQLEKD--IVHHGCN--FTDGC 81
Query: 228 GKISAELAE--IVAKNCGF-----TIYTPSAFQIRYGGYKGVVAVDPT---SSTKLSLRK 277
G++S +LA+ + K+C + PS QIR+ G KG++ DP+ S + LR+
Sbjct: 82 GRMSTQLAQRFTLNKHCANRYKHQSFEVPSIVQIRFMGCKGILVHDPSLDFSGKDVILRE 141
Query: 278 SMLKYK 283
S K++
Sbjct: 142 SQKKFE 147
>gi|290994060|ref|XP_002679650.1| predicted protein [Naegleria gruberi]
gi|284093268|gb|EFC46906.1| predicted protein [Naegleria gruberi]
Length = 1124
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 109/460 (23%), Positives = 185/460 (40%), Gaps = 87/460 (18%)
Query: 138 KFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDI------KNVAKYAARLGQS 191
+++ SNS + ++ +R L A I + +GDF + K ++ A LG+S
Sbjct: 449 EYKFFGTSNSGINGHTALFIDTR--LNFAKIHDLLGDFSECAKAGPRKAFSRIALALGKS 506
Query: 192 FGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKI------------SAELAEIVA 239
F S + + ++ ++ D E DG + D I E V
Sbjct: 507 FQS---LVELKKEELWVLYDEEDYPDGAGFMHEDYFQDILRNTICTPYFETRKNTTEAVF 563
Query: 240 KNCGFTIYTPSAFQIRYGGYKGVVAVDPTS-------------STKLSLRKSMLKYKSES 286
+C I A Q R G KGV P + K R SM+K+ S
Sbjct: 564 MDC--KIEEIVAMQFRALGMKGVFQSIPDEYWKELQTRHGFPDTVKCVARPSMIKFMGNS 621
Query: 287 T---SLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDA-------ILT 336
D+L S+ Q +NR T +S + R E Q+ V LD IL
Sbjct: 622 EVYRHFDVLNVSRIQGGSINR---TFMSCMLRRTTNKEAMQQLFVKMLDEYIKSESNILD 678
Query: 337 DPLKAHEAL--ELMSSGENT-NVLKELLMCGYKPDVEPFLLMMLQT-----FRA--SNLL 386
+ L E+ +G++ +K LL+ G+ + PF+ ++ F++ N L
Sbjct: 679 TKFLYNSLLSNEVFDNGDSVYRTIKNLLLAGFGME-NPFVYKYIKKRIKARFQSMIDNKL 737
Query: 387 ELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEG 446
L+ +++ + +MG +DE+G L + +V++ C + + D
Sbjct: 738 CLKMKSKFSV----TLMGVIDESGELNADEVYIPCLKLQEQLMRD----------YYKLK 783
Query: 447 KVVVAKNPCLHPGDMRVLRAVDVPS---LHHMVDCVVFPA--KGKRPHTNECSGSDLDGD 501
+V+V ++P + GD+ L+ P L + +VFP K K PH +G DGD
Sbjct: 784 EVIVYRHPLAYEGDIAKLKLRKDPCNEFLASRSNVIVFPKVFKEKSPH-QYLAG---DGD 839
Query: 502 VYFVCWDHELIPPL-QFP-PMDYTPAPEKVLARDMTIEDV 539
Y V +D E++ + P P+DY + A +I+ V
Sbjct: 840 AYEVVFDMEILKLFDKHPKPIDYDEGKQSSGATSQSIQPV 879
>gi|302413491|ref|XP_003004578.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
gi|261357154|gb|EEY19582.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
Length = 99
Score = 59.3 bits (142), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 47/90 (52%)
Query: 472 LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLA 531
L + +C+VF G + ++ SG DL+GD Y + WD + P F DY+ L
Sbjct: 10 LRDLRNCIVFSQHGDQDLPSQLSGGDLNGDQYNIIWDRQACPKRFFASADYSRITPTELN 69
Query: 532 RDMTIEDVEEYFADYIVNDSLGVICNAHVV 561
R +T + +F D++ +D LG+I H++
Sbjct: 70 RQVTRDGKAGFFVDFMKSDMLGMITTEHLI 99
>gi|353241158|emb|CCA72990.1| related to qde-1 RNA-dependent RNA polymerase (RdRP) [Piriformospora
indica DSM 11827]
Length = 1766
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 15/176 (8%)
Query: 355 NVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCL--DETGTL 412
L + L+ G + + L + + ++ + + + ++ R+ G L D TG+L
Sbjct: 1251 QALHDALLAGIEVHKSNYWLKLWSEMASEAMMRVVAKFHLPVE--RSACGFLQPDFTGSL 1308
Query: 413 ESGQVFVQCSASRRREFLDNSCNNRSGELGV--VEGKVVVAKNPCLHPGDMRVLRAVDVP 470
+ G+VF S + +D+ L V +EG V+V ++P L P DMR ++AV VP
Sbjct: 1309 KEGEVFF----SPKSAMVDSETG-----LAVQFIEGDVIVGRHPALLPTDMRKVKAVFVP 1359
Query: 471 SLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAP 526
L + G+ P + +G D DGD + W+ ++ P + P+ P
Sbjct: 1360 KLQDFKGILFCSIHGELPLASILAGGDYDGDEGTIIWEQRIVHPFKNAPLHLREPP 1415
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 86/199 (43%), Gaps = 39/199 (19%)
Query: 175 FRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAEL 234
+ + ++++K A RL F + + ++ + I ++ D+E DDG F+DG G ++ L
Sbjct: 945 YNEKQDMSKLATRLELGFSDTLPGVLLEPAHIHVVNDIE-NDDGT--VFTDGAGLMTPSL 1001
Query: 235 AEIVAKNCGF-------TIYTPSAFQIRYGGYKGVVAVDP--------TSSTKLSLRKSM 279
A +A+ + TP A+QIR KGVV +DP +L L KSM
Sbjct: 1002 ARTLARKYPTKDQRDRDALDTPVAYQIRVQTAKGVVLIDPDMLVDRNFDGPHRLLLSKSM 1061
Query: 280 LKYKSESTSL--------DILANSKYQPCF-------------LNRQLITLLSTLGIRDH 318
K + L IL + C L+ Q IT+LS+ G+ D
Sbjct: 1062 CKAARGNKPLRPGPVNGMHILDAADCIVCIVKPAPVSASTGVRLSSQFITVLSSCGVPDD 1121
Query: 319 VFEKKQREGVAQLDAILTD 337
VF + Q + + + TD
Sbjct: 1122 VFLQIQHDALEKELEAWTD 1140
>gi|426200996|gb|EKV50919.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1000
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 9/169 (5%)
Query: 359 ELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVF 418
ELL G+ P L L + + I + + D G L+ G+++
Sbjct: 551 ELLQAGFHPRHSAVLKDKLSFIIEQEIEHCVKKYAIPLAESLSGFVAPDPLGILDEGEIY 610
Query: 419 VQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDC 478
+ S S LD +V G V++ + P D++ ++AV+ P L+ D
Sbjct: 611 FRSSES----LLDPRTQL---TYDIVTGDVILGRYPVRLASDLQKVKAVNKPELYRWPDV 663
Query: 479 VVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPE 527
++ KGKR + SG D+DGD F+ + +++ P + P + P P+
Sbjct: 664 IIVSTKGKRSLASLLSGGDMDGDTLFMLREPDIVEPFRNQP--FVPPPD 710
>gi|290994090|ref|XP_002679665.1| predicted protein [Naegleria gruberi]
gi|284093283|gb|EFC46921.1| predicted protein [Naegleria gruberi]
Length = 1014
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 98/437 (22%), Positives = 176/437 (40%), Gaps = 73/437 (16%)
Query: 130 NGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRD----IKNVAKYA 185
NGI ++ + SNS +K +S +F + L ++ +G D V K A
Sbjct: 263 NGISYEGHCYKFFSTSNSGMKGSSA-VFINSTLLNLETVKLLVGSSFDKALQTGGVRKVA 321
Query: 186 ARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAEL-AEIVAKNCGF 244
+R+G S G+S ++L D +ED+ + +DG G ++ EI+ K
Sbjct: 322 SRIGLSIGTSIQSLATFEFDQIFCLPQNIEDE---FPITDGSGLARSDFFEEILEKTYAI 378
Query: 245 TIY----------------------TPSAFQIRYGGYKGVVAVDPTS------------- 269
+ SA Q+R G KGV+ P S
Sbjct: 379 PYFEMEKLAKHPEMKLSRRLETDYKNVSAIQVRMLGAKGVLQKIPDSLWKVLQVKWKFPD 438
Query: 270 STKLSLRKSMLKYKSES-TSLDILANSKYQPCFLNRQLITLLSTLGIRDH------VFEK 322
STK+ LR SM+K+++ +D+L+ S ++R +++ L L DH +F
Sbjct: 439 STKVILRNSMIKFETAYYKKIDVLSYSSATGGSISRGVMSCL--LERTDHREEMEEIFMN 496
Query: 323 KQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRA 382
+ + +++ DP+ L + + K+L+M + P F+ +++
Sbjct: 497 DLDDYLKEMEDNRNDPIYVCNYLLTGTGNTKEGLAKQLIMADH-PLNNYFIDSVIRENIK 555
Query: 383 SNLLELRTRTRIFIQNGR---AMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSG 439
+ L L F N + +G +DE+G L+ G++ + C A +
Sbjct: 556 TRHLGLVNDNLSFKINSHYCVSALGGVDESGELKEGEIHINCDAFTNSPYY--------L 607
Query: 440 ELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS---LHHMVDCVVFP-AKGKRPHTNECSG 495
EL V+V +NP + GD++ L+ P L + + F +KG R G
Sbjct: 608 ELDY----VLVYRNPLGYEGDIQKLKIKKNPQSEFLKSRRNSITFAMSKGTRNPIGFMQG 663
Query: 496 SDLDGDVYFVCWDHELI 512
D DGD Y + + +++
Sbjct: 664 GDFDGDRYNIIFHPKIV 680
>gi|341039071|gb|EGS24063.1| hypothetical protein CTHT_0007750 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 392
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 54/103 (52%), Gaps = 24/103 (23%)
Query: 494 SGSDLDGDVYFVCWDHELI---PPLQ-FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVN 549
SG DLDGD++ V WD L P L+ F P DY P L ++TI D+ +FAD+
Sbjct: 110 SGGDLDGDLFHVIWDPALFNAKPKLETFEPADYPRIPPLELEGEITIRDMANFFADF--- 166
Query: 550 DSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTG 592
+ AD PD C++LAKL++ AV+ SKTG
Sbjct: 167 ---------KTILAD--PD------CMKLAKLASSAVNLSKTG 192
>gi|402576169|gb|EJW70128.1| hypothetical protein WUBG_18968 [Wuchereria bancrofti]
Length = 123
Score = 58.2 bits (139), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/48 (52%), Positives = 34/48 (70%)
Query: 220 TYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP 267
+Y FSDG+GK+S E AE +A + G PS +QIR+ G KGV++VDP
Sbjct: 31 SYTFSDGVGKVSKEFAEKIAFDIGLGTSVPSCYQIRHRGIKGVLSVDP 78
>gi|392575871|gb|EIW69003.1| hypothetical protein TREMEDRAFT_73994 [Tremella mesenterica DSM 1558]
Length = 1405
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 444 VEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKG--KRPHTNECSGSDLDGD 501
+EG V+ ++PC P D+R AV P L H+ DC+V A+ +R + G D DGD
Sbjct: 961 LEGPVLALRSPCKLPSDIRKFTAVYRPELVHLTDCIVMSARDDCRRSPASFLGGGDYDGD 1020
Query: 502 VYFVCWDHELIPPLQ 516
+ WD E++ P +
Sbjct: 1021 TVQIIWDPEIVGPFK 1035
>gi|392562423|gb|EIW55603.1| hypothetical protein TRAVEDRAFT_128797, partial [Trametes
versicolor FP-101664 SS1]
Length = 894
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 16/179 (8%)
Query: 360 LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFV 419
L+ G+ P P L L + +T+ R + + D G L ++ V
Sbjct: 418 LIDAGFTPQTCPVLRAKLMEVAKKVVTTFKTKYRFAVPMSCSAFIVPDPYGVLGPNEIHV 477
Query: 420 QCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
+CS RR+F+D + +V G V+V ++PC P D++ ++AV L H + +
Sbjct: 478 KCS---RRDFVDQEGR----QTDIVLGDVLVTRHPCKVPSDVQKVKAVFHERLRHYCNVI 530
Query: 480 VFPAKGK--------RPHTNECSGSDLDGDVYFVCWDHELIPPLQFP-PMDYTPAPEKV 529
V K R + G D DGD V WD L+ + P P + P +V
Sbjct: 531 VVSTKSHTYQGVPLDRHLASLTGGGDYDGDTMEVFWDPALVGAFKEPDPRVFAVEPPEV 589
>gi|361066517|gb|AEW07570.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149658|gb|AFG56735.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149660|gb|AFG56736.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149662|gb|AFG56737.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149664|gb|AFG56738.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149666|gb|AFG56739.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149668|gb|AFG56740.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149670|gb|AFG56741.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149672|gb|AFG56742.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149674|gb|AFG56743.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149676|gb|AFG56744.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149678|gb|AFG56745.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149680|gb|AFG56746.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149682|gb|AFG56747.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149684|gb|AFG56748.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149686|gb|AFG56749.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149688|gb|AFG56750.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149690|gb|AFG56751.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149692|gb|AFG56752.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
Length = 67
Score = 57.8 bits (138), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 8/71 (11%)
Query: 688 GIKTEAEILSGCIMEMAK---SFDKKRDL-EAIIFAVKSLKKEARAWFNKKNESDSSHED 743
G++ EA+I+SG I ++ S +K D+ E I+ VKSLK+EAR WF + +D
Sbjct: 1 GVRNEADIISGNIASLSNFVGSNKRKGDIRETILSGVKSLKQEARRWFGDISNTDKQ--- 57
Query: 744 VYAKASAWYHV 754
+AKASAWYHV
Sbjct: 58 -FAKASAWYHV 67
>gi|395335049|gb|EJF67425.1| hypothetical protein DICSQDRAFT_177042 [Dichomitus squalens
LYAD-421 SS1]
Length = 1306
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 91/237 (38%), Gaps = 21/237 (8%)
Query: 288 SLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALEL 347
S+ L + +P QL T +S LG V E+ A D I PL H
Sbjct: 734 SMQDLVDRDDEPPEALEQLATEISDLG--GDVSEETISTYTALRDPITGQPLTIH----- 786
Query: 348 MSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLD 407
V +L+ G+ P FL L+ + ++ + I + D
Sbjct: 787 -------GVSLDLIQAGFNPLKLEFLYEKLKKIVTMAIDDIISDYHISVPLSAEAFIIPD 839
Query: 408 ETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAV 467
G L ++ + + + + D + + GE V++ +NPC P D++ + AV
Sbjct: 840 PYGILNEREIHFKSTKNLKDPLEDMNPHQLLGE-------VLIYRNPCRLPSDVQKVTAV 892
Query: 468 DVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTP 524
L D +V P G R + +G D DGDV V +D L+ PP+ P
Sbjct: 893 QCDVLAAYTDVIVLPTVGARSFASYLAGGDYDGDVAVVIYDDRLVKDFTTPPVTQEP 949
>gi|242208189|ref|XP_002469946.1| predicted protein [Postia placenta Mad-698-R]
gi|220731008|gb|EED84857.1| predicted protein [Postia placenta Mad-698-R]
Length = 1427
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 75/178 (42%), Gaps = 15/178 (8%)
Query: 360 LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFV 419
LL G+KPD P L L+ + R R+ + D G LE GQV +
Sbjct: 641 LLDSGFKPDTCPVLAAKLKEVVKRAINSYVRRYRVDVPQSCTAYIVPDPLGVLEPGQVHI 700
Query: 420 QCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
+ S RR +D + R + +V G+V+V ++PC P D++ + AV L VD +
Sbjct: 701 KSS---RRNLVDQ--DGRPTD--IVLGEVLVTRHPCKVPTDVQKVTAVFNQKLSSYVDVI 753
Query: 480 VFPAKGK-------RPHTNECS-GSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKV 529
V K H C+ G D DGD W+ +L+ + + P+ V
Sbjct: 754 VVSIKDHVSNKKLMNRHLASCTGGGDYDGDTMEAFWNSDLVEGFKNAETKFLNEPKNV 811
>gi|145531992|ref|XP_001451757.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124419423|emb|CAK84360.1| unnamed protein product [Paramecium tetraurelia]
Length = 1257
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 80/411 (19%), Positives = 165/411 (40%), Gaps = 62/411 (15%)
Query: 128 LRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAAR 187
L G I ++++ L ++N +++ N +WM + I + ++ A+ +R
Sbjct: 629 LTEGFTICSEQWKFLGWNNKELRSNIIWMNKVSNKELDNYILANFKQNSTLQQKAEVKSR 688
Query: 188 LGQSF--GSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFT 245
F G + E + I ++ ++ ++ + G+IS L + + + F
Sbjct: 689 FRNFFIDGLTTEFKQL----IIVVIRNQINENNFS-----QFGQISRNLIDKIRE--IFM 737
Query: 246 IYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLK-YKSESTSLDILANSKYQPCFLNR 304
S ++ + G + ++ ++ + S K + S + + I+ +KY+ FLNR
Sbjct: 738 NQEISVVKVVFNGVQYILQLNNNLKDNIIQLNSQYKIFSSFNDQITIIDYNKYRGAFLNR 797
Query: 305 QLITLLSTLGIRDHVFEKKQREGVAQLD-AILTDPLKAHEALELMSSGENTNVLKELLMC 363
LI L +G+++ VF + + Q+ A + + +L+L S +C
Sbjct: 798 GLIRLFYQMGVKEDVFIQLLNWHLGQISKAFIVRSV----SLDLKSE-----------LC 842
Query: 364 GYKPDVEPFLLMMLQTFRASNLL---------------ELRTRTRIFIQNGRAMMGCLDE 408
G P +E +M N L +L+ + I ++ + G +D+
Sbjct: 843 GLSPIIEQINVMKRNYLNEKNCLFIQKVYEKLKLLEIQQLKQKYNILVEKAERLFGVVDQ 902
Query: 409 TGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMR---VLR 465
G L G+V + + ++L+ G+L VVE + G R + R
Sbjct: 903 YGILNEGEVICIRKPNDQVQYLE-------GKLIVVEDCNQDRQKTLNVIGLSRLEVIGR 955
Query: 466 AVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ 516
+ + ++C++F K ++ T C+ + YFV WD LI Q
Sbjct: 956 LKNKTAYDEYINCIIFSNK-QQNSTPFCTNT------YFVSWDKRLISKRQ 999
>gi|389740950|gb|EIM82140.1| hypothetical protein STEHIDRAFT_124929 [Stereum hirsutum FP-91666
SS1]
Length = 982
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 74/192 (38%), Gaps = 10/192 (5%)
Query: 360 LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFV 419
LL G+ P P L L+ + + R ++ + D G L G++ +
Sbjct: 488 LLDSGFTPQNNPVLASKLEKVIKGAVNKRLARCKVEVPMACTAFIIPDPFGVLNEGEIHI 547
Query: 420 QCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
+ S L N + G V+V +NPC P D++ + AV L D +
Sbjct: 548 KSS-------LTNLQRQDGLSTAQILGPVLVTRNPCKLPSDIQKVTAVFCAELRDYDDVI 600
Query: 480 VFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDV 539
VF KG+R + + D DGD W E++ + P +++ E
Sbjct: 601 VFSTKGRRSLASLLATGDYDGDKAVAIWQPEIVDDFVNADTKFADPPADLMS---FFEKE 657
Query: 540 EEYFADYIVNDS 551
E AD+++ S
Sbjct: 658 NETVADFLLRTS 669
>gi|225683475|gb|EEH21759.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 1341
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 39/79 (49%)
Query: 448 VVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCW 507
V+VA+ P P D++ RAV L H D +VFP G P + SG D DGD +VCW
Sbjct: 926 VLVARLPAHLPTDIQKRRAVYKNELRHFKDVIVFPTTGDVPLASLLSGGDYDGDQCWVCW 985
Query: 508 DHELIPPLQFPPMDYTPAP 526
D ++ D T P
Sbjct: 986 DPIIVREFSNSHFDPTTIP 1004
>gi|226287106|gb|EEH42619.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 1366
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 34/61 (55%)
Query: 448 VVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCW 507
V+VA+ P P D++ RAV L H D +VFP G P + SG D DGD +VCW
Sbjct: 951 VLVARLPAHLPTDIQKRRAVYKNELRHFKDVIVFPTTGDVPLASLLSGGDYDGDQCWVCW 1010
Query: 508 D 508
D
Sbjct: 1011 D 1011
>gi|451994086|gb|EMD86557.1| hypothetical protein COCHEDRAFT_1034369 [Cochliobolus
heterostrophus C5]
Length = 110
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 15/100 (15%)
Query: 370 EPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRRE- 428
EPF++ +L +RA + L+ + RI I NG ++GC+DET L+ SRR
Sbjct: 14 EPFIMSLLALWRACTIKNLKEKARIAIDNGAFLLGCVDETKKLKE---HFNDPRSRRDAT 70
Query: 429 -----------FLDNSCNNRSGELGVVEGKVVVAKNPCLH 457
FL S N G ++EG +VA+NP LH
Sbjct: 71 RDGKLATLPEIFLQVSNPNSKGHYIIIEGICIVARNPSLH 110
>gi|295666726|ref|XP_002793913.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226277566|gb|EEH33132.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1176
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 64/155 (41%), Gaps = 20/155 (12%)
Query: 360 LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFV 419
LL G+ P P+L + + L LR + ++ + D G L +V
Sbjct: 711 LLDSGFLPLKLPYLTQLFRWILKDYLDSLR-KLKVSVSQSTYAYCIADPLGVLSPDEVHF 769
Query: 420 QCSASRRREFLDNSCNNRSGELGVVEG------KVVVAKNPCLHPGDMRVLRAVDVPSLH 473
S E+ D S VV G V+VA+ P P D++ RAV L
Sbjct: 770 GFS----HEWEDGS---------VVVGTELHNINVLVARLPAHLPTDIQKRRAVYKNELR 816
Query: 474 HMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWD 508
H D ++FP G P + SG D DGD +VCWD
Sbjct: 817 HFKDVIIFPTTGDVPLASLLSGGDYDGDQCWVCWD 851
>gi|402219719|gb|EJT99791.1| hypothetical protein DACRYDRAFT_100977 [Dacryopinax sp. DJM-731
SS1]
Length = 1204
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 98/211 (46%), Gaps = 35/211 (16%)
Query: 407 DETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVV--AKNPCLHPGDMRVL 464
D TG L+ G++FVQ RRE+ + + S + ++ G V++ + G + +
Sbjct: 774 DPTGKLKPGEIFVQF----RREY--DVTDTES--MKILTGDVLLLYQEKKFYAEGIVIKM 825
Query: 465 RAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTP 524
+AVD+ LH+M D +V +G+R + G D DGD V W+ +++ P + +
Sbjct: 826 KAVDIDELHYMYDVIVMSTEGERSPASMLGGGDYDGDRATVIWEPQIVEPFKTADPKFAD 885
Query: 525 APE---KVLARDMT-----IEDVEEYFADYIVND-SLGVICNAHVVHADLEPD------- 568
PE + L RD T ++ + + A I ++ ++C+ +H+D +
Sbjct: 886 QPENFDRFLDRDTTTVASLLQKMHGWNASAIRSEIQKYLLCD---LHSDFQMQGYSHRHD 942
Query: 569 ------KARSNQCLELAKLSTIAVDFSKTGV 593
A + +E A +++D +KTGV
Sbjct: 943 VVLYLLGASHPKAVEFAHKYMVSLDSAKTGV 973
>gi|255546343|ref|XP_002514231.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223546687|gb|EEF48185.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
Length = 114
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 6/99 (6%)
Query: 419 VQCSA--SRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMV 476
+ C+A + E + NS +R + + GKV+V +NP LH GD+ VL+A V +L V
Sbjct: 1 MSCTARVNLAHECIHNSQPDRPWDNEHISGKVLVYRNPGLHFGDIHVLKATYVKALEDFV 60
Query: 477 D----CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHEL 511
+ FP KG + +E +G D + D+YFV + E+
Sbjct: 61 GNAKYAIFFPCKGPQSLADEIAGGDFNNDMYFVSRNPEV 99
>gi|409047033|gb|EKM56512.1| hypothetical protein PHACADRAFT_118286 [Phanerochaete carnosa
HHB-10118-sp]
Length = 965
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 10/193 (5%)
Query: 332 DAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTR 391
DA++ +P K + GE + E + G+ P + L L+T +
Sbjct: 474 DAVIDEPTKPDTDAPPPAIGEG---ILERIQAGFSPLTDIHLYNELKTLLKIVMESYIKD 530
Query: 392 TRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVA 451
I + D G LE ++ + S + L ++C + + + V G V++
Sbjct: 531 YHIIVPESAEAFIVPDPYGLLEEDEIHFKSS-----QDLKDACEHLNPK--SVVGDVLIY 583
Query: 452 KNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHEL 511
+NP P D++ +RAV P +D ++ P KG+R + +G D DGDV +D ++
Sbjct: 584 RNPARVPSDVQKVRAVCRPEYADYLDVIILPTKGRRSLASLLAGGDYDGDVATCIFDPQI 643
Query: 512 IPPLQFPPMDYTP 524
+ + P P
Sbjct: 644 VGDFRQPVFTAEP 656
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 83/200 (41%), Gaps = 32/200 (16%)
Query: 174 DFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITY----CFSDGIGK 229
D D +N++KYAAR + +S L D +I +I D+E G F+DG G
Sbjct: 224 DLNDKQNLSKYAARSDLALSTSSPVLEFDPRNIYMINDIEAPHTGGKVPPEKIFTDGCGF 283
Query: 230 ISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVD-----PTSSTKLSLRKSMLK--- 281
++ V K G + P+A Q R G KGV + PT+ ++ +R S K
Sbjct: 284 MNGAALMRVGKWIG-SGSPPTAVQGRILGSKGVWLLHPDDRAPTAEPRIWIRPSQRKIRL 342
Query: 282 ---YKSESTS--------LDILANSKYQ-PCFLNRQLITLLSTLGIRDHVFE-------K 322
Y +ES + D++ S+ P L+R I L+ G+ + K
Sbjct: 343 VREYNAESLATLHRAHLIFDLVMPSRSTVPARLSRLTIVNLAHNGVPTKILTALMEGGLK 402
Query: 323 KQREGVAQLDAILTDPLKAH 342
+ EG+ Q PL H
Sbjct: 403 AEVEGLTQWQGASAMPLLWH 422
>gi|383127813|gb|AFG44556.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
gi|383127815|gb|AFG44557.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
gi|383127817|gb|AFG44558.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
gi|383127819|gb|AFG44559.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
gi|383127821|gb|AFG44560.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
gi|383127823|gb|AFG44561.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
gi|383127825|gb|AFG44562.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
Length = 114
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 714 EAIIFAVKSLKKEARAWFNKKNESDS----SHEDVYAKASAWYHVAYHPSYWGRYKE--- 766
E + A K+L+KE R F +S++ D AKASAWYHVAYHP++ + E
Sbjct: 5 ERLQHAYKALRKEFRLVFEGTKDSENPEPRKQSDYEAKASAWYHVAYHPTWVQKTMELIE 64
Query: 767 -EGMNRTHFLSFPWCIHDKLIEIKRGK 792
G + LSFPW D L +IK K
Sbjct: 65 PNGYHSAPLLSFPWISVDYLAQIKLQK 91
>gi|409052182|gb|EKM61658.1| hypothetical protein PHACADRAFT_135496 [Phanerochaete carnosa
HHB-10118-sp]
Length = 913
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 14/140 (10%)
Query: 376 MLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCN 435
+L+ F + L LR FI D TG L +++ + S ++S N
Sbjct: 457 VLKAFFDNLRLPLRASAEAFI--------VPDPTGKLRENEIYFRSSTLA----FEDSPN 504
Query: 436 NRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSG 495
L + G ++ +NP D+R +RAVDVP L D +V P KG + +G
Sbjct: 505 IYDCHLML--GDCLLYRNPARLASDVRKVRAVDVPELVLYKDVIVVPCKGPVSLPSMLAG 562
Query: 496 SDLDGDVYFVCWDHELIPPL 515
D+DGD WD L+ P
Sbjct: 563 GDVDGDTAVCIWDPALVKPF 582
>gi|392597508|gb|EIW86830.1| hypothetical protein CONPUDRAFT_115565 [Coniophora puteana
RWD-64-598 SS2]
Length = 1143
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 79/191 (41%), Gaps = 21/191 (10%)
Query: 360 LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCL-----DETGTLES 414
LL G+ P P L L S + R ++ + M C+ D G L
Sbjct: 666 LLDSGFTPQECPVLRDKLTAVVKSTVDRHVARYKLDVP-----MSCIAWMVPDPFGILAP 720
Query: 415 GQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHH 474
+V ++ S DN + V G V++ ++PC P D++ + AV L
Sbjct: 721 DEVHIRSSQ-------DNLLQKDGSKAQTVLGSVLLTRHPCKLPTDVQKVTAVQRGELAG 773
Query: 475 MVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLAR-- 532
D +V +G R + +G D DGD V W+ +I + + ++ APE +++
Sbjct: 774 YTDVIVCSIQGDRRFADLLAGGDYDGDKAIVIWEPTIINTFRNADLKFSKAPEDLMSHFL 833
Query: 533 --DMTIEDVEE 541
++T+E E
Sbjct: 834 KENITVEQFLE 844
>gi|408393216|gb|EKJ72482.1| hypothetical protein FPSE_07363 [Fusarium pseudograminearum CS3096]
Length = 218
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 128 LRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAKYAAR 187
LR GI + + NSQ+K S ++ A+ E + I ES+ DF +K V K A
Sbjct: 123 LRAGITVNGVHYNFYGHINSQLKSRSCFLLAATKEEISLQI-ESLEDFTKMKTVGKKAKC 181
Query: 188 LGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIG 228
+G F S++ A+ + E IPDVE D Y F+ G+
Sbjct: 182 IGLLFSSAKTAMTTNPDRCEDIPDVETVD----YIFTMGVA 218
>gi|219117572|ref|XP_002179579.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408632|gb|EEC48565.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|225382106|gb|ACN89265.1| putative RNA-dependent RNA polymerase [Phaeodactylum tricornutum]
Length = 976
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 57/137 (41%), Gaps = 34/137 (24%)
Query: 389 RTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKV 448
+TR RI + M G D TG + G VFV +G E +
Sbjct: 739 QTRCRI---HHTFMPGYADPTGAIPHGHVFV------------------TGSKPFQENLL 777
Query: 449 VVAKNPCLHPGDMRVLRAVDVPSLHHMVD-----------CVVFP--AKGKRPHTNECSG 495
V ++PC+ P D R+L + ++D ++F G +P +
Sbjct: 778 FVTRSPCIFPSDGRLLPNLVTKPNAMVIDDWNWLNSLPFGALIFADATPGMKPLPAHIAN 837
Query: 496 SDLDGDVYFVCWDHELI 512
DLDGD+YFVCWD E++
Sbjct: 838 GDLDGDLYFVCWDSEIL 854
>gi|390599418|gb|EIN08814.1| hypothetical protein PUNSTDRAFT_44349 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 1065
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 21/121 (17%)
Query: 407 DETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRA 466
D TGTL+ G++F++ S DN + + G+V+V +A
Sbjct: 707 DPTGTLDPGEIFIRSSH-------DNVIGLDGIKTDTIIGEVLV--------------KA 745
Query: 467 VDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAP 526
V P+LH + +V KG R + +G D DGD FV WD ++ P + + Y P
Sbjct: 746 VYRPALHRYTNQIVISVKGDRSLASILAGGDYDGDKCFVTWDPAIVEPFKNAHLRYADPP 805
Query: 527 E 527
+
Sbjct: 806 D 806
>gi|392570629|gb|EIW63801.1| hypothetical protein TRAVEDRAFT_138069 [Trametes versicolor
FP-101664 SS1]
Length = 1030
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 9/172 (5%)
Query: 355 NVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRT-RIFIQNGRAMMGCLDETGTLE 413
V+ +LL G+ P P L L+ SN++E R + I D G L+
Sbjct: 533 GVVMDLLQAGFHPLRLPALYEKLRKI-TSNVIEDIIRDFHVSIPLSAEAFIVPDPYGVLK 591
Query: 414 SGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLH 473
G++ + S + D + N ++ G V++ +NP P D++ + AV L
Sbjct: 592 PGEIHFRSSKDLKSALEDLNPN-------ILLGDVLIYRNPNRLPSDVQKVTAVQHELLA 644
Query: 474 HMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPA 525
D +V P++G + +G D DGDV +D L+ P+ PA
Sbjct: 645 DYADVIVLPSRGPCSFASMLAGGDYDGDVCVCIYDPRLVRDFNNSPLSQAPA 696
>gi|449668207|ref|XP_002154892.2| PREDICTED: uncharacterized protein LOC100214913 [Hydra
magnipapillata]
Length = 712
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 16/139 (11%)
Query: 655 TDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGC-IMEMAKSF--DKKR 711
+ + + G+ +Y+ DA + + Y + + +M ++ +K EA+++ GC + F DK +
Sbjct: 518 SSLRIPGYYEYLEDALEVYSCYAHNIKAIMSWFDLKVEADVVLGCATYNWSTHFEADKGK 577
Query: 712 DLEAIIFAVKSLKKEARAWFNKKNESDSSHEDV--YAKASAWYHVAYHPSYWGRYKEEGM 769
++I K L K+ R F S+ +DV KA AWY++ Y + K G
Sbjct: 578 ASKSIAECYKQLVKKFREIF------FSNIDDVSKMKKACAWYNLVYDNA----IKIVG- 626
Query: 770 NRTHFLSFPWCIHDKLIEI 788
++ +LSFPW I D L E+
Sbjct: 627 HKKKYLSFPWVISDVLCEL 645
>gi|395331410|gb|EJF63791.1| hypothetical protein DICSQDRAFT_55194 [Dichomitus squalens LYAD-421
SS1]
Length = 1069
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 92/223 (41%), Gaps = 33/223 (14%)
Query: 327 GVAQLDAILT--------DPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQ 378
G++QLD L DP+ SS E T + L+ G++PD L L+
Sbjct: 535 GLSQLDTALRQQSSAWWEDPISGSP-----SSLEETCMT--LIDSGFRPDDCAVLGAKLR 587
Query: 379 TFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRS 438
+ +T+ R + + D G L++ +V V+ S RR D+
Sbjct: 588 EVAKKVVKTFQTKYRFAVPMSCSAFIVPDPYGVLKANEVHVRSS---RRNLPDHQ----- 639
Query: 439 GEL-GVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGK--------RPH 489
G L +V G V+V ++PC P D++ ++AV L H D +V + + R
Sbjct: 640 GRLTDLVLGDVLVTRHPCKVPSDVQKVKAVFHERLRHYCDVIVVSTESQTFRGEPLNRHL 699
Query: 490 TNECSGSDLDGDVYFVCWDHELIPPLQFP-PMDYTPAPEKVLA 531
+ G D DGD V WD +++ P P + P V A
Sbjct: 700 ASLTGGGDYDGDTMEVFWDPDIVNAFHIPDPRVFAVEPPMVRA 742
>gi|383145806|gb|AFG54505.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145808|gb|AFG54506.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145810|gb|AFG54507.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145812|gb|AFG54508.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145814|gb|AFG54509.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145816|gb|AFG54510.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145818|gb|AFG54511.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145822|gb|AFG54513.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145824|gb|AFG54514.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145826|gb|AFG54515.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145828|gb|AFG54516.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145830|gb|AFG54517.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145832|gb|AFG54518.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145834|gb|AFG54519.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145836|gb|AFG54520.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145838|gb|AFG54521.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145840|gb|AFG54522.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
Length = 125
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 714 EAIIFAVKSLKKEARAWFNKKNESDS----SHEDVYAKASAWYHVAYHPSYWGRYKE--- 766
E + A ++L+ E R F K + ++ + AKASAWYHV YHP++ + +E
Sbjct: 17 ERLQHAYRALRNEFRLIFQGKTDGETPEPCKRSEYEAKASAWYHVTYHPTWVQKARELTE 76
Query: 767 -EGMNRTHFLSFPWCIHDKLIEIKRGK 792
+G + LSFPW D L +IK K
Sbjct: 77 LDGYFTSPLLSFPWISVDYLAQIKLQK 103
>gi|361066837|gb|AEW07730.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
Length = 125
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 714 EAIIFAVKSLKKEARAWFNKKNESDS----SHEDVYAKASAWYHVAYHPSYWGRYKE--- 766
E + A ++L+ E R F K + ++ + AKASAWYHV YHP++ + +E
Sbjct: 17 ERLQHAYRALRNEFRLIFQGKTDGETPEPCKRSEYEAKASAWYHVTYHPTWVQKARELTE 76
Query: 767 -EGMNRTHFLSFPWCIHDKLIEIKRGK 792
+G + LSFPW D L +IK K
Sbjct: 77 SDGYFTSPLLSFPWISVDYLAQIKLQK 103
>gi|353241842|emb|CCA73629.1| hypothetical protein PIIN_07582 [Piriformospora indica DSM 11827]
Length = 1021
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 444 VEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVY 503
+G+V++ ++P L P D++ +R ++ SL ++ +G RP + SG D DGD
Sbjct: 629 TKGEVLIGRHPALLPTDIQKVRLANITSLKQKRGLIICSTQGSRPLADLLSGGDYDGDEA 688
Query: 504 FVCWDHELIPPLQ 516
+ WD ++ Q
Sbjct: 689 IIIWDRNVVNAFQ 701
>gi|403414080|emb|CCM00780.1| predicted protein [Fibroporia radiculosa]
Length = 1620
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 15/161 (9%)
Query: 360 LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFV 419
LL G+ P P L L+ + + + +I + + + D L G++ V
Sbjct: 1110 LLDAGFNPKTCPVLAAKLKEVVKRVITTMVRKYQIEVSQSLSAVIVPDPCNVLRPGEIHV 1169
Query: 420 QCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCV 479
+ S +R +D ++ G V+V ++PC P D++ ++AV L + VD +
Sbjct: 1170 KSS---QRNLVDQD----GKRTDIILGDVLVTRHPCKVPTDVQKVQAVYHEKLRNYVDVI 1222
Query: 480 VFPAK----GKR---PHTNECS-GSDLDGDVYFVCWDHELI 512
V K G + H C+ G D DGD+ V W EL+
Sbjct: 1223 VVSTKDHIYGNKLLNRHLASCTGGGDYDGDMMEVFWKRELV 1263
Score = 47.4 bits (111), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 39/174 (22%)
Query: 179 KNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCF------------SDG 226
+ + K+AAR +S V S+I EDD I + +DG
Sbjct: 840 QTMVKWAARFALGLSNSVPGARVRPSEIAF------EDDIICAAWDGNGKAPNEQIMTDG 893
Query: 227 IGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDP-------TSSTKLSLRKSM 279
G IS ++ +++A G + P+A Q+R G KG++ P SS ++ LR S
Sbjct: 894 CGLISTDILQLIADRLGLS-SVPTAIQMRVCGSKGILLAHPHPQRPSLASSPRVWLRPSQ 952
Query: 280 LKYKSEST------------SLDILANSKY-QPCFLNRQLITLLSTLGIRDHVF 320
+K K +T ++D+L S+ P L+ + I L+ G+ VF
Sbjct: 953 VKIKHSTTNQLPANLDPALCTIDVLRPSRLTSPVRLSTETIINLAENGVPTDVF 1006
>gi|154285562|ref|XP_001543576.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150407217|gb|EDN02758.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1055
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 10/144 (6%)
Query: 366 KPDVEPFLLMMLQTFRA-SNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSAS 424
KP EP L + +R + L+ + +I + D G L +V + S
Sbjct: 545 KPMDEPQLTFEVVQWRLLQDYLDNLKKLKITVSQSTFAYCVADPFGVLRPDEVHLGFS-- 602
Query: 425 RRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAK 484
RE+ S EL ++ V++A+ P D++ ++V L HM D +VFP
Sbjct: 603 --REWEHGSAGT---ELHDID--VLLARLPAHLATDIQKRKSVYKNELRHMKDVIVFPTT 655
Query: 485 GKRPHTNECSGSDLDGDVYFVCWD 508
G P + SG D DGD +VCWD
Sbjct: 656 GDTPLASLLSGGDYDGDQCWVCWD 679
>gi|383145820|gb|AFG54512.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
Length = 125
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 714 EAIIFAVKSLKKEARAWFNKKNESD----SSHEDVYAKASAWYHVAYHPSYWGRYKE--- 766
E + A ++L+ E R F K + + + AKASAWYHV YHP++ + +E
Sbjct: 17 ERLQHAYRALRNEFRLIFQGKTDGEIPEPCKRSEYEAKASAWYHVTYHPTWVQKARELTE 76
Query: 767 -EGMNRTHFLSFPWCIHDKLIEIKRGK 792
+G + LSFPW D L +IK K
Sbjct: 77 LDGYFTSPLLSFPWISVDYLAQIKLQK 103
>gi|327354916|gb|EGE83773.1| hypothetical protein BDDG_06718 [Ajellomyces dermatitidis ATCC
18188]
Length = 1096
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 448 VVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCW 507
+++A+ P D++ R+V +L H D +VFP G P + SG D DGD +VCW
Sbjct: 666 ILLARLPAHLSTDIQKRRSVYKNALRHFKDVIVFPTTGDTPLASLLSGGDYDGDQCWVCW 725
Query: 508 D 508
D
Sbjct: 726 D 726
>gi|302693755|ref|XP_003036556.1| hypothetical protein SCHCODRAFT_102609 [Schizophyllum commune H4-8]
gi|300110253|gb|EFJ01654.1| hypothetical protein SCHCODRAFT_102609, partial [Schizophyllum
commune H4-8]
Length = 1168
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 107/253 (42%), Gaps = 30/253 (11%)
Query: 314 GIRDHVFEKKQREGVAQ-LDA-ILTDPLK-AHEALELMSSG---ENTNVLKELLMCGYKP 367
G DH F+ K + A+ ++A I DP A E +SG ++ +L G++P
Sbjct: 594 GHVDHFFDTKDTDSDAEEVEADIDADPAPYAIAGWEDPASGCPATPAEIVCTMLQAGFQP 653
Query: 368 DVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRR 427
FL L+ + RI + + + D TG L+ GQ++ + S+SR
Sbjct: 654 QTCEFLRAKLEWLTKRVAQRSIKQMRIDVAHSFSAWIVPDPTGRLQPGQMYFK-SSSRDL 712
Query: 428 EFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRA----------------VDVPS 471
LD + ++ V G ++ +NPC P D++ +R VD P
Sbjct: 713 VGLDGTPTDQ------VLGDALITRNPCKLPTDVQKVRMPLGRADAAAHPLQWTFVDEPQ 766
Query: 472 LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLA 531
L H+ D +V P G R + G D DGD V +D +++ + + Y PE V +
Sbjct: 767 LRHLFDVIVLPINGPRRPADYLGGGDYDGDKGTVYYDPQMVQQFRNAGLRYADEPESVAS 826
Query: 532 R-DMTIEDVEEYF 543
D +E V +
Sbjct: 827 SFDSDVEKVGAFL 839
>gi|397613827|gb|EJK62448.1| hypothetical protein THAOC_16940 [Thalassiosira oceanica]
Length = 552
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 34/153 (22%)
Query: 402 MMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDM 461
++G D T ++ GQVF+ + + KV+V+++PC++ DM
Sbjct: 271 VVGVADPTNSIPFGQVFITGFK----------------HIKTYQDKVIVSRSPCINNLDM 314
Query: 462 RVLRAVD-------------VPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWD 508
R + V + SL V P G + + + DLDGD YF+CWD
Sbjct: 315 RTAKTVVAKPRKMNHDEWEWLNSLPFGVLVFPNPPTGTQSMPEQIANGDLDGDRYFICWD 374
Query: 509 HELIPPLQFPPMDYTPAPEKVLARDMTIEDVEE 541
L+ + P++ E+ + D T V+E
Sbjct: 375 DALVGNIVTQPIE-----ERKASPDTTSTAVQE 402
>gi|239612171|gb|EEQ89158.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis ER-3]
Length = 1382
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 448 VVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCW 507
+++A+ P D++ R+V +L H D +VFP G P + SG D DGD +VCW
Sbjct: 952 ILLARLPAHLSTDIQKRRSVYKNALRHFKDVIVFPTTGDTPLASLLSGGDYDGDQCWVCW 1011
Query: 508 D 508
D
Sbjct: 1012 D 1012
>gi|261202284|ref|XP_002628356.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis SLH14081]
gi|239590453|gb|EEQ73034.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis SLH14081]
Length = 1382
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 448 VVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCW 507
+++A+ P D++ R+V +L H D +VFP G P + SG D DGD +VCW
Sbjct: 952 ILLARLPAHLSTDIQKRRSVYKNALRHFKDVIVFPTTGDTPLASLLSGGDYDGDQCWVCW 1011
Query: 508 D 508
D
Sbjct: 1012 D 1012
>gi|403364990|gb|EJY82270.1| RNA-dependent RNA polymerase [Oxytricha trifallax]
Length = 126
Score = 48.9 bits (115), Expect = 0.010, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 186 ARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFT 245
AR Q F +R + + IE I D+ G F+DG G IS ELA + + G
Sbjct: 12 ARAAQLFTGTRYICELKKTQIEYIGDIVNYRKG---NFTDGNGCISQELANRINRMYGLE 68
Query: 246 IYTPSAFQIRYGGYKGVVAVDPTSSTK-LSLRKSMLKYKSESTSLDI 291
SA+Q R GG KG + V+ + + +R +M K+++ TSL+I
Sbjct: 69 --DCSAYQFRLGGCKGTLVVNQELQEEVIQIRNTMKKFENSDTSLNI 113
>gi|361124327|gb|EHK96429.1| putative RNA-dependent RNA polymerase 1 [Glarea lozoyensis 74030]
Length = 900
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 11/104 (10%)
Query: 411 TLESGQVFVQCSASRRREFLDNSCNNRSGELGVV--EGKVVVAKNPCLHPGDMRVLRAVD 468
+LE +V++ S+ F+D+ SG+ GV+ V+VA++P D++ ++AV
Sbjct: 456 SLEPDEVYMDFSS-----FVDDV----SGQSGVLLHRQDVLVARSPAHFVSDIQKVKAVA 506
Query: 469 VPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI 512
L + D +VF KG + SG D DGD+ ++CW+ ++
Sbjct: 507 KVELIGLKDVIVFSTKGNPSLAAKLSGGDYDGDLAWLCWEPSIV 550
>gi|242048810|ref|XP_002462151.1| hypothetical protein SORBIDRAFT_02g020720 [Sorghum bicolor]
gi|241925528|gb|EER98672.1| hypothetical protein SORBIDRAFT_02g020720 [Sorghum bicolor]
Length = 84
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 601 LRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVD 660
LR + +PDFME+ ++ Y S V+ KLYRA T + +M YD D+EV
Sbjct: 5 LRPQEFPDFMEQWERPMYVSNSVLDKLYRAALWHEENTEALLPVPPPSSM--YDPDVEVA 62
Query: 661 GFEDYITDAFKYKTEYDNRLGN 682
GF+ ++ A K Y RLG
Sbjct: 63 GFDKHLDTAEKQYRAYAERLGT 84
>gi|290977359|ref|XP_002671405.1| predicted protein [Naegleria gruberi]
gi|284084974|gb|EFC38661.1| predicted protein [Naegleria gruberi]
Length = 283
Score = 48.1 bits (113), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 461 MRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ 516
MR+ +AV L H+ D VVF + G + SG+DLDGD +++ WD EL+ +Q
Sbjct: 1 MRLFQAVKKDCLTHLKDVVVFSSLGPEFVPSLISGADLDGDHFYIFWDSELVENIQ 56
>gi|242208926|ref|XP_002470312.1| predicted protein [Postia placenta Mad-698-R]
gi|220730619|gb|EED84473.1| predicted protein [Postia placenta Mad-698-R]
Length = 842
Score = 47.8 bits (112), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 15/131 (11%)
Query: 407 DETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRA 466
D G LE GQV ++ S RR +D + R + +V G+V+V ++PC P D++ + A
Sbjct: 513 DPLGVLEPGQVHIKSS---RRNLVDQ--DGRPTD--IVLGEVLVTRHPCKVPTDVQKVTA 565
Query: 467 VDVPSLHHMVDCV-------VFPAKGKRPHTNECS-GSDLDGDVYFVCWDHELIPPLQFP 518
V L VD + VF K H C+ G D DGD W+ L+ +
Sbjct: 566 VFNQKLSSYVDVIVVSIKDHVFNKKLLNRHLASCTGGGDYDGDTMEAFWNPALVEGFRNA 625
Query: 519 PMDYTPAPEKV 529
+ P+ V
Sbjct: 626 ETKFLNEPKNV 636
>gi|302413493|ref|XP_003004579.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
gi|261357155|gb|EEY19583.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
Length = 139
Score = 47.8 bits (112), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 34/166 (20%)
Query: 302 LNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELL 361
LNRQ+I +L +G+RD F +Q+ + + A+ + NT
Sbjct: 3 LNRQMIKILEDMGVRDEWFFSQQKRELERRHAV-------------TAGAWNTGAF---- 45
Query: 362 MCGYKPDVEPFLLMMLQTFRASNLLELRT---RTRIFIQNGRAMMGCLDETGTLESGQVF 418
C K L + R++ L ELR + RI + G + G +DE+G L G+V
Sbjct: 46 -CSSKASAR-HLTSRHSSRRSTMLKELRLLKFKARIPMPQGVTLFGIMDESGFLSEGEVS 103
Query: 419 VQCSASRRREFLDNSCNNRSGEL--GVVEGKVVVAKNPCLHPGDMR 462
V C +SC N S + + +G + V ++P L+PGD++
Sbjct: 104 V-CY---------DSCYNGSLPIDSTLNDGNIPVIRSPALYPGDIQ 139
>gi|403159921|ref|XP_003890550.1| hypothetical protein PGTG_20838 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375169335|gb|EHS63855.1| hypothetical protein PGTG_20838 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1158
Score = 47.4 bits (111), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 98/426 (23%), Positives = 159/426 (37%), Gaps = 100/426 (23%)
Query: 218 GITYCFSDGIGKISAELAEIVAKNCGFTIYT-PSAFQIRYGGYKGVVAVDPTSSTK---- 272
G + +DG G IS A V ++ G T PSA+Q R G KG+ V P S
Sbjct: 385 GKSEIMTDGAGIISRAAATRVCESLGRKYDTLPSAYQARIGFSKGLWVVPPEYSAHNITP 444
Query: 273 -LSLRKSMLKYKSEST------------SLDILANSKYQPCFLNRQLITLLSTLGIRDHV 319
+ +R S ++K+E S + ++S L +QL+ +LS G+++
Sbjct: 445 WIEIRDS--QWKAEPIEGYTFHFNLCRISRSVTSSS------LGKQLLPVLSARGVQNKT 496
Query: 320 FEKKQREGVAQLDAILT--DPLKAHEALELMSSGENTNVLKELL---------MCGYK-- 366
E + + L DPL+ E L SG + +L Y+
Sbjct: 497 VCSALEEHITSTISDLNSADPLRLAEV--LSRSGGLKQTRRAILDRISNVQHNPTAYRTY 554
Query: 367 ------PDVEP--------------------------FLLMMLQTFRASN---LLELR-- 389
P+++P + M+ F N + +LR
Sbjct: 555 GNDPVAPNIDPEYGESWAFTTDGLHAMSLVPFHAEEQVISMLAAGFEPRNRYIVTKLRKI 614
Query: 390 --------TRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGEL 441
+ R+ I + D TGTL+ + F+Q S+ F D + L
Sbjct: 615 KEDKISNAIKFRVPIAQSTYLYVMPDPTGTLKEDEAFLQFSS-----FEDYQTGIK---L 666
Query: 442 GVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMV-DCVVFPAKGKRPHTNECSGSDLDG 500
+ +V+++PC+ D R + VD L + D +V +GK + SG D DG
Sbjct: 667 SNLVCPAIVSRSPCVASIDARKINLVDNDILRDVYYDVLVCSIQGKTSLLSLLSGGDYDG 726
Query: 501 DVYFVCWDHELIPPLQFPPMDYTPAPEKV---LARDMTIEDVEEYFADYIVNDSLGVICN 557
D V WD L+ QF +D P V L + + VEE + N+ +
Sbjct: 727 DQVMVIWDPVLV--QQFHNVDLDKHPRIVTDELFEPVQLGTVEECLLEAYENNPEEFVKT 784
Query: 558 AHVVHA 563
A ++ A
Sbjct: 785 AQLIQA 790
>gi|453080015|gb|EMF08067.1| hypothetical protein SEPMUDRAFT_152361 [Mycosphaerella populorum
SO2202]
Length = 396
Score = 47.0 bits (110), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 22/115 (19%)
Query: 597 IPSGLRVEIYPDFMEKQDKT---CYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSY 653
+P+ LR++ +P + E ++K Y S RV+GKLY VK KE ++
Sbjct: 1 MPADLRIQRWPHWSEPRNKAKSKVYTSHRVLGKLYDEVK-------------KEPFHAAW 47
Query: 654 DTDME------VDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIME 702
D + ++ + DA + K YD + +M +GIKTE E+ + ++E
Sbjct: 48 DMPFDERILTALEPSHQMLNDAKEIKALYDEAIRRIMAQHGIKTEFEVFTTFVLE 102
>gi|328850109|gb|EGF99278.1| hypothetical protein MELLADRAFT_79506 [Melampsora larici-populina
98AG31]
Length = 1048
Score = 47.0 bits (110), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 442 GVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHM-VDCVVFPAKGKRPHTNECSGSDLDG 500
G++ ++ ++PC P D++ +R V L + D +V +G R + SG D DG
Sbjct: 559 GILARHALIWRSPCAAPIDIQKVRLVANEQLQRLYFDVLVCSTRGGRAVLSLLSGGDYDG 618
Query: 501 DVYFVCWDHELIPPLQ 516
D V WD L+ P Q
Sbjct: 619 DQVAVTWDKRLVDPFQ 634
>gi|297848118|ref|XP_002891940.1| hypothetical protein ARALYDRAFT_892768 [Arabidopsis lyrata subsp.
lyrata]
gi|297337782|gb|EFH68199.1| hypothetical protein ARALYDRAFT_892768 [Arabidopsis lyrata subsp.
lyrata]
Length = 117
Score = 47.0 bits (110), Expect = 0.044, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 3 YIEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSK 62
+I+ AL L L ECCY WL+++Y + + S +L+ ++Y+++V VTP++
Sbjct: 54 FIDEALAKLRCLNECCYTLASWLKQEYTDWGKKTQPPRSKE-SLEGVVVYIHQVKVTPTR 112
Query: 63 VYFSG 67
VYF G
Sbjct: 113 VYFCG 117
>gi|238580064|ref|XP_002389180.1| hypothetical protein MPER_11728 [Moniliophthora perniciosa FA553]
gi|215451163|gb|EEB90110.1| hypothetical protein MPER_11728 [Moniliophthora perniciosa FA553]
Length = 317
Score = 46.6 bits (109), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 18/113 (15%)
Query: 536 IEDVEEYFADYIVNDSLGVICNAHVVHAD----LEPDKARSNQCLELAKLSTIAVDFSKT 591
++DV ++ +YI +D LG++ + AD PD C+++A L ++AVD+ K+
Sbjct: 1 MDDVADFVMEYITHDVLGMVSINWRILADQTNIFNPD------CMKMAALHSLAVDYPKS 54
Query: 592 GVAATIPSGLRV--EIYPDFMEKQD------KTCYESQRVIGKLYRAVKDIAP 636
G I + E PD+ + Y SQ+ IGKL+RA+ AP
Sbjct: 55 GNPVPIQDIPKRSNEKLPDWYAPETMYTLDTSKYYPSQKAIGKLFRAIALDAP 107
>gi|336365378|gb|EGN93729.1| hypothetical protein SERLA73DRAFT_163465 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1089
Score = 45.8 bits (107), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 27/161 (16%)
Query: 360 LLMCGYKP-DVEPF-------LLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGT 411
L+ G+ P +++P L M++ + +S + ++ +I D G
Sbjct: 684 LIQAGFHPINLQPLFDKLKIILTMVINQYVSSFHMPVQESADAYI--------IPDPFGV 735
Query: 412 LESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPS 471
L+ G++ + S E L N + V G+V+V +NP P D++ + AV P
Sbjct: 736 LKEGEIHFRSS-----ESLTNPATG--AQFDTVRGEVLVTRNPTRLPSDIQKVTAVSHPK 788
Query: 472 LHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI 512
L + +VF KG R + G GD + W L+
Sbjct: 789 LDNYYGVIVFSTKGDRSLASWLGG----GDTVTLIWSKPLV 825
>gi|403415588|emb|CCM02288.1| predicted protein [Fibroporia radiculosa]
Length = 1313
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 446 GKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGK--------RPHTNECSGSD 497
G+V+V ++PC P DM+ L +V L VD +V KG R + G D
Sbjct: 891 GEVIVTRHPCKTPTDMQKLVSVFNNRLIRFVDVIVVSVKGHLFNNEFLPRHLASMTGGGD 950
Query: 498 LDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLA 531
DGD V WD LI + ++ P +V A
Sbjct: 951 YDGDTVEVYWDPRLIENFRNANPNFAKEPPEVQA 984
>gi|224144332|ref|XP_002336131.1| hypothetical protein POPTRDRAFT_584507 [Populus trichocarpa]
gi|222873590|gb|EEF10721.1| hypothetical protein POPTRDRAFT_584507 [Populus trichocarpa]
Length = 211
Score = 43.9 bits (102), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 590 KTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVK 632
K G +P L+ E++P FMEK +K Y S ++GK+Y VK
Sbjct: 38 KGGRKIEVPEALKAELFPHFMEKHEKKTYRSTSILGKIYDKVK 80
>gi|225382110|gb|ACN89267.1| putative RNA-dependent RNA polymerase 2 [Thalassiosira pseudonana]
Length = 1039
Score = 43.1 bits (100), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 27/120 (22%)
Query: 401 AMMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGD 460
+++G +D TG++ +G V++ R + K+ + ++PC
Sbjct: 670 SVIGLIDPTGSIPNGMVYIPGMGKR------------------LPSKIFITRSPCTEVSH 711
Query: 461 MRVLR-AVDVP-------SLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI 512
RV+ A ++P + + VVF A + P + + DLDGD YF+CWD +++
Sbjct: 712 GRVVEVAKELPPDAFQFFNREYSFGSVVF-ALEENPLPMKLADGDLDGDWYFICWDDKIL 770
>gi|393904651|gb|EJD73759.1| hypothetical protein LOAG_18838 [Loa loa]
Length = 543
Score = 42.7 bits (99), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 48 DGLIYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKL-YSTVLS 106
+G V KV++TP++V PE+ + NRV+R++ + + LR+ F D+D L +T
Sbjct: 459 EGYQRVRKVVITPTRVLLVVPELLMGNRVLRTFDKDGNGALRIQFRDDDGTPLRLNTTGL 518
Query: 107 PLISSTNEERHTTIYERVLSTLRNGIVIG 135
LI +T +TL GI IG
Sbjct: 519 FLIQTT-----------TFNTLSRGIYIG 536
>gi|224093872|ref|XP_002310028.1| hypothetical protein POPTRDRAFT_654879 [Populus trichocarpa]
gi|222852931|gb|EEE90478.1| hypothetical protein POPTRDRAFT_654879 [Populus trichocarpa]
Length = 189
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 597 IPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVK 632
+P GL+ E++P FM K +K Y S ++GK+Y VK
Sbjct: 12 VPEGLKAELFPHFMGKNEKKTYRSTSILGKIYDKVK 47
>gi|156564082|ref|YP_001429828.1| hypothetical DNA-directed RNA polymerase [Bacillus phage
0305phi8-36]
gi|154622779|gb|ABS83659.1| hypothetical DNA-directed RNA polymerase [Bacillus phage
0305phi8-36]
Length = 1218
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 93/219 (42%), Gaps = 33/219 (15%)
Query: 444 VEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVF--PAKGKRPHTNECSGSDLDGD 501
VE + ++P +H + VL VD P+ H ++ P P G+D DGD
Sbjct: 521 VESRFAAFRSPLIHKSEAVVLNTVDAPAYHVFNQDILIMNPFDDTLPR---MGGADTDGD 577
Query: 502 VYFVCWDHELIPPLQFP-PMDYTPAPEKVLARDMTIEDVEEYFADYIVND---SLGVICN 557
+ + E+ ++ PM Y A K + + +Y I+N+ S+G I N
Sbjct: 578 KVAMVENDEICDAVETGLPMLY-DAGFKAGESPNSEAQIFKYDLATIINEDVLSIGEITN 636
Query: 558 AHVVHADLE------PDKARSNQCLELAKLSTI----------AVDFSKTGVAATIPSGL 601
D+ ++ + + L A++ I ++DF+KTG +P +
Sbjct: 637 MSTAWKDIANNPKIMKERKINGESLTPARIDEIVCILRFMQGWSIDFAKTGFFPEVPEYV 696
Query: 602 RVEIYP-----DFMEK--QDKTCYESQRVIGKLYRAVKD 633
+ P + M+K ++K + S+ +G+L+ AVK+
Sbjct: 697 EIMEQPHWKQFNVMKKVNKEKNVFVSKSQLGQLFNAVKE 735
>gi|323448091|gb|EGB03994.1| hypothetical protein AURANDRAFT_67557 [Aureococcus anophagefferens]
Length = 1507
Score = 40.4 bits (93), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 444 VEGKVVVAKNPCLHPGDMRVLRAVDVP-----SLHHMVDCVV-FPAKGKRPHTNECSGSD 497
+EG V + +P L P D+ VL AV P +L + V+ P + P G D
Sbjct: 766 IEGPVAIMTDPTLAPEDVLVLDAVPPPPALLEALGRVPRGVLMLPTTARHPTAEFLCGGD 825
Query: 498 LDGDVYFVCWDHELIPPLQFPP 519
DGD V W E++ L P
Sbjct: 826 YDGDTAVVLWRREIVDGLGAAP 847
>gi|449541903|gb|EMD32884.1| hypothetical protein CERSUDRAFT_142953, partial [Ceriporiopsis
subvermispora B]
Length = 125
Score = 40.0 bits (92), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
++ + G+++ ++ SNSQ++ ++ + + + S+GDF I AK
Sbjct: 1 MIRLFQAGLMLNGVQYRFYGHSNSQLRSRGCFLREANTDDELDEKIYSLGDFHRIMTAAK 60
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKN 241
A R+G F + +D + I D+ V + FSDG G +S A V+++
Sbjct: 61 RAKRIGLLFSQAELDWVLDPRHTKDIDDIVVNGEN----FSDGCGLMSKRFATQVSRH 114
>gi|300709176|ref|XP_002996755.1| hypothetical protein NCER_100131 [Nosema ceranae BRL01]
gi|239606078|gb|EEQ83084.1| hypothetical protein NCER_100131 [Nosema ceranae BRL01]
Length = 849
Score = 40.0 bits (92), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST 112
V +VTP ++ + P + SNR++R + E FLR+SF +ED L I T
Sbjct: 769 VKHAVVTPLRIVYKLPVVFESNRILREFDYE--KFLRISFREED--------LKTKIKDT 818
Query: 113 NEERHTTIYERVLSTLRNGIVIGDK 137
+ IY+ + L GI +G K
Sbjct: 819 VNKDQNFIYDYFRNILNEGIFVGKK 843
>gi|19921392|ref|NP_609761.1| CG18480 [Drosophila melanogaster]
gi|7298243|gb|AAF53475.1| CG18480 [Drosophila melanogaster]
gi|25012666|gb|AAN71428.1| RE50361p [Drosophila melanogaster]
gi|220950552|gb|ACL87819.1| CG18480-PA [synthetic construct]
Length = 550
Score = 39.7 bits (91), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 80 YPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKF 139
Y D RL ++D ++L + ++ S N+ H + LSTL G ++
Sbjct: 114 YGDAFVELTRLRYLDLSYNRL-EQIDEHILESNNQLIHLNLEGNKLSTLGKGPILRSPSL 172
Query: 140 ETLAFSNSQVKDNSMWMFASRPELTAADIRESM------GDFRDIKNVA 182
+L NSQV + ++ P+L D+ +++ GDF +N+A
Sbjct: 173 RSLNLRNSQVNQLGTQLLSALPQLRQLDLAQNLLLTLSPGDFHAPRNLA 221
>gi|195338631|ref|XP_002035928.1| GM16111 [Drosophila sechellia]
gi|194129808|gb|EDW51851.1| GM16111 [Drosophila sechellia]
Length = 540
Score = 39.3 bits (90), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 80 YPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYERVLSTLRNGIVIGDKKF 139
Y D RL ++D ++L + ++ S N+ H + LSTL G ++
Sbjct: 104 YGDAFVELTRLRYLDLSYNRL-EQIDEHILESNNQLIHLNLEGNKLSTLGKGPILRSPSL 162
Query: 140 ETLAFSNSQVKDNSMWMFASRPELTAADIRESM------GDFRDIKNVA 182
+L NSQV + ++ P+L D+ +++ GDF +N+A
Sbjct: 163 RSLNLRNSQVNQLGTQLLSALPQLRQLDLAQNLLLTLSPGDFHAPRNLA 211
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,131,980,900
Number of Sequences: 23463169
Number of extensions: 509045845
Number of successful extensions: 1236657
Number of sequences better than 100.0: 794
Number of HSP's better than 100.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 100
Number of HSP's that attempted gapping in prelim test: 1231429
Number of HSP's gapped (non-prelim): 1233
length of query: 795
length of database: 8,064,228,071
effective HSP length: 151
effective length of query: 644
effective length of database: 8,816,256,848
effective search space: 5677669410112
effective search space used: 5677669410112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 81 (35.8 bits)