BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003789
(795 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LQV2|RDR1_ARATH RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2
SV=1
Length = 1107
Score = 1042 bits (2694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/787 (65%), Positives = 613/787 (77%), Gaps = 19/787 (2%)
Query: 4 IEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNKVLVTPSKV 63
I+H LE LFHL ECCYEP WL ++Y+K++ + SP ++LDDGL+Y+ +V VTP++V
Sbjct: 318 IDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTPARV 377
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTIYER 123
YFSGPE+++SNRV+R Y I+NFLR+SFVDEDL+K+ S LSP S+ +R T +Y+R
Sbjct: 378 YFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDLSPRSST---QRRTKLYDR 434
Query: 124 VLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKNVAK 183
+ S LR+GIVIGDKKFE LAFS+SQ+++NS WMFA +TAA IR MGDF I+NVAK
Sbjct: 435 IYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAK 494
Query: 184 YAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCG 243
YAARLGQSF SSRE L+V S +IE+IPDVE+ G Y FSDGIGKISAE A VA+ CG
Sbjct: 495 YAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFARKVARKCG 554
Query: 244 FTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLN 303
T ++PSAFQIRYGGYKGVVAVDP SS KLSLRKSM K++SE+T LD+LA SKYQPC++N
Sbjct: 555 LTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMN 614
Query: 304 RQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMC 363
RQLITLLSTLG+ D VFEKKQRE V +LDAILT PL+AHEAL LM+ GENTN+LK L++C
Sbjct: 615 RQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEALGLMAPGENTNILKALILC 674
Query: 364 GYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQCSA 423
GYKPD EPFL MMLQ FRAS LLELRT+TRIFI GR+MMGCLDET TLE GQV VQ S
Sbjct: 675 GYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSD 734
Query: 424 SRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPA 483
R G ++ G VVVAKNPCLHPGD+RVL+AV+VP+L+HMVDCVVFP
Sbjct: 735 PM-----------RPGRRFIITGPVVVAKNPCLHPGDVRVLQAVNVPALNHMVDCVVFPQ 783
Query: 484 KGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEEYF 543
KG RPH NECSGSDLDGD+YFVCWD EL+PP PMDYTP P ++L D+TIE+VEEYF
Sbjct: 784 KGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQILDHDVTIEEVEEYF 843
Query: 544 ADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRV 603
A+YIVNDSLG+I NAH AD EP KA S+ C+ELAK + AVDF KTGVAA IP L V
Sbjct: 844 ANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPKTGVAAVIPQHLYV 903
Query: 604 EIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFE 663
+ YPDFMEK DK YES+ VIGKL+R VK+ APP +IKSFT +VA +SYD DMEVDGFE
Sbjct: 904 KEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVASKSYDKDMEVDGFE 963
Query: 664 DYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAVKSL 723
+Y+ +AF K YD +LGNLMDYYGIKTEAEILSG IM M+KSF K+RD E+I AV++L
Sbjct: 964 EYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRDAESIGRAVRAL 1023
Query: 724 KKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFPWCIHD 783
+KE + FN E ++ AKASAWYHV YH SYWG Y EG+NR HFLSF WC++D
Sbjct: 1024 RKETLSLFNASEEEENES----AKASAWYHVTYHSSYWGLYN-EGLNRDHFLSFAWCVYD 1078
Query: 784 KLIEIKR 790
KL+ IK+
Sbjct: 1079 KLVRIKK 1085
>sp|Q0DXS3|RDR1_ORYSJ Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp.
japonica GN=RDR1 PE=2 SV=2
Length = 740
Score = 920 bits (2378), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/735 (62%), Positives = 561/735 (76%), Gaps = 20/735 (2%)
Query: 61 SKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEERHTTI 120
S VYF GPEI++SNRVVR++ +I+NFLR+SFVDED +KL +T LSP +S ++ T +
Sbjct: 7 STVYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTAL 66
Query: 121 YERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIKN 180
Y+RVLS L +GI IG K FE LAFS+SQ++DNS WMFASR L A+DIR MGDFR+I+N
Sbjct: 67 YKRVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRN 126
Query: 181 VAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAK 240
VAKYAARLGQSF SS E L V ++E I D++ +G + FSDGIGKIS+ A VA
Sbjct: 127 VAKYAARLGQSFSSSTETLKVQKYEVEEISDIK---NGTQHVFSDGIGKISSAFANEVAM 183
Query: 241 NCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPC 300
C + PSAFQIRYGGYKGVVAVDPTS KLSLRKSMLK++S++ ++D+LA SKYQP
Sbjct: 184 KCNLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPG 243
Query: 301 FLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKEL 360
FLNRQLITLLSTLG+RD VFE+KQ E V QL+ ++TDP A EA+ELM GE TN +KEL
Sbjct: 244 FLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKEL 303
Query: 361 LMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFVQ 420
L+CGY+PD EP+L M+LQTFRAS LLEL+T++RI I GRAMMGCLDET TL+ GQVF++
Sbjct: 304 LLCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIR 363
Query: 421 CSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVV 480
++ N+R V GKVV+AKNPCLHPGD+R+L AVDVP LHHM +CVV
Sbjct: 364 ATSGVND-------NDRF----TVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVV 412
Query: 481 FPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVE 540
FP +G RPH NECSGSDLDGD+YFV WD LIPP PMDYTPAP + L D+TIE+VE
Sbjct: 413 FPQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVE 472
Query: 541 EYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSG 600
EYF +YIVN+SLG+I NAHVV AD E KA S+ C+ELAKL +IAVDF KTGV A IP
Sbjct: 473 EYFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPE 532
Query: 601 LRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVD 660
L V+ YPDFMEK DK YES+ VIGKLYR +K P IK FT+EVA +SYDTDM VD
Sbjct: 533 LHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTP---HIKHFTREVARRSYDTDMIVD 589
Query: 661 GFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDLEAIIFAV 720
G+EDYIT+A K EYD +LGNLMD+YGIK+EAEI+SGCI++MAK+F KK D +AI AV
Sbjct: 590 GYEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRLAV 649
Query: 721 KSLKKEARAWFNKKNESDS--SHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFLSFP 778
+SL+KEAR+ F++ + D+ H+ AKASAWYHV YHP +WG Y EG R HF+SFP
Sbjct: 650 RSLRKEARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYN-EGYERPHFISFP 708
Query: 779 WCIHDKLIEIKRGKQ 793
WCI++KL+ IK+ ++
Sbjct: 709 WCIYEKLLRIKQRRK 723
>sp|O82504|RDR2_ARATH RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=3
SV=1
Length = 1133
Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/799 (44%), Positives = 507/799 (63%), Gaps = 35/799 (4%)
Query: 8 LETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVAL----DDGLIYVNKVLVTPSKV 63
L+ L CY+PV +++ Q + V ++ SPA A + ++ + VTPSK+
Sbjct: 334 LKKLHQQSSICYDPVFFVKTQMQSVV--KKMKHSPASAYKRLTEQNIMSCQRAYVTPSKI 391
Query: 64 YFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTN----EERHTT 119
Y GPE+ +N VV+++ + + +F+R++FV+ED KL + LS ++S + T
Sbjct: 392 YLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKLPANALS--VNSKEGYFVKPSRTN 449
Query: 120 IYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDIK 179
IY RVLS L GI +G K+FE LAFS SQ++ NS+WMFAS ++ A DIRE MG FR I+
Sbjct: 450 IYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMFASNEKVKAEDIREWMGCFRKIR 509
Query: 180 NVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVA 239
+++K AAR+GQ F +SR+ L V + D+E IPD+EV DG YCFSDGIGKIS A+ VA
Sbjct: 510 SISKCAARMGQLFSASRQTLIVRAQDVEQIPDIEVTTDGADYCFSDGIGKISLAFAKQVA 569
Query: 240 KNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQP 299
+ CG + + PSAFQIRYGGYKGV+AVD +S KLSLR SMLK+ S + L++ ++ P
Sbjct: 570 QKCGLS-HVPSAFQIRYGGYKGVIAVDRSSFRKLSLRDSMLKFDSNNRMLNVTRWTESMP 628
Query: 300 CFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKE 359
CFLNR++I LLSTLGI D +FE Q ++ L +L D A L+ +S + N+L +
Sbjct: 629 CFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNMLEDRDAALNVLQKLSGENSKNLLVK 688
Query: 360 LLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQVFV 419
+L+ GY P EP+L MML+ S L EL++R RI + GR ++GC+DE G LE GQV+V
Sbjct: 689 MLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVPKGRILIGCMDEMGILEYGQVYV 748
Query: 420 QCSASRRR-EFLDNSCNNR-SGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHH--M 475
+ + ++ + D S + E VV GKVVV KNPCLHPGD+RVL A+
Sbjct: 749 RVTLTKAELKSRDQSYFRKIDEETSVVIGKVVVTKNPCLHPGDIRVLDAIYEVHFEEKGY 808
Query: 476 VDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMT 535
+DC++FP KG+RPH NECSG DLDGD +FV WD ++IP PPMDY + +++ D+T
Sbjct: 809 LDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKIIPSEMDPPMDYAGSRPRLMDHDVT 868
Query: 536 IEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAA 595
+E++ ++F DY+++D+LGVI AH+VHAD +P+KARS +CLELA L + AVDF+KTG A
Sbjct: 869 LEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARSQKCLELANLHSRAVDFAKTGAPA 928
Query: 596 TIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDT 655
+P L+ +PDF+E+ +K Y S+ V GKLYRAVK A K + +YD
Sbjct: 929 EMPYALKPREFPDFLERFEKPTYISESVFGKLYRAVKS---SLAQRKPEAESEDTVAYDV 985
Query: 656 DMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCI--MEMAKSFDKKR-- 711
+E GFE +I A ++ Y +L +LM YYG E EIL+G + EM + D +R
Sbjct: 986 TLEEAGFESFIETAKAHRDMYGEKLTSLMIYYGAANEEEILTGILKTKEMYLARDNRRYG 1045
Query: 712 DL-EAIIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMN 770
D+ + I +VK L KEA WF K E + + + ASAWY+V Y+P+ +++E +
Sbjct: 1046 DMKDRITLSVKDLHKEAMGWFEKSCEDEQQKKKL---ASAWYYVTYNPN----HRDEKLT 1098
Query: 771 RTHFLSFPWCIHDKLIEIK 789
FLSFPW + D L++IK
Sbjct: 1099 ---FLSFPWIVGDVLLDIK 1114
>sp|Q7XM31|RDR2_ORYSJ Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp.
japonica GN=RDR2 PE=2 SV=1
Length = 1136
Score = 635 bits (1638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/805 (43%), Positives = 488/805 (60%), Gaps = 37/805 (4%)
Query: 8 LETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDG-------LIYVNKVLVTP 60
E + L CY P+++++++ S L S ++G L+ +V +TP
Sbjct: 329 FEKMHKLESTCYGPLQFIQQEAYSMKRSHNVLLS-----NEGEGEGERKLMKCYRVNITP 383
Query: 61 SKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISST--NEERHT 118
SK++ GPE ++N VV+ + +F+R++FVDED KL S +S I ++ T
Sbjct: 384 SKIFCFGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKLSSNAISARIEQGFFSKPFKT 443
Query: 119 TIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDI 178
+Y R+LS L+ G IG K FE LAFS SQ++ NS+WMFAS L A IR MG F +I
Sbjct: 444 GLYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFASNASLNAGGIRRWMGHFENI 503
Query: 179 KNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIV 238
++V+K AAR+GQ F SSR+ V D+E+IPD+E+ DG Y FSDGIGKIS A+ V
Sbjct: 504 RSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITTDGSKYIFSDGIGKISLRFAKRV 563
Query: 239 AKNCGF-TIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKY 297
A + G PSAFQIRYGGYKGV+A+DP SS LSLR SM K++SES L+I + SK
Sbjct: 564 AHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDLSLRPSMKKFESESRMLNITSWSKS 623
Query: 298 QPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVL 357
QPC++NR++I+LLSTLGIRD +F Q++ + + + +LT+ A L + E +
Sbjct: 624 QPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNKEVALSVLGKLGGSETKTAV 683
Query: 358 KELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGTLESGQV 417
K +L+ GY+P EP+L M+L+ + + L ++RTR +I + GR ++GCLDETG LE GQV
Sbjct: 684 K-MLLQGYEPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKGRVLIGCLDETGVLEYGQV 742
Query: 418 FVQCSASRRREFLDNSCN--NRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDVPSLHHM 475
+++ + + + + N N G+ V GKV + KNPCLHPGD+RVL A+ P L M
Sbjct: 743 YIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAITKNPCLHPGDIRVLEAIYDPDLVGM 802
Query: 476 VDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYTPAPEKVLARDMT 535
VDC+VFP +G+RPH NECSG DLDGD+YF+ WD +LIP PMDYT +++ +T
Sbjct: 803 VDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEKVDTPMDYTATRPRIMDHVVT 862
Query: 536 IEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAA 595
+E+++++F DY++NDSLG I AH++HAD P KARS +CL+LA L ++AVDF+KTG A
Sbjct: 863 LEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECLQLATLHSMAVDFAKTGAPA 922
Query: 596 TIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQS--Y 653
+P LR YPDFME+ +K Y S V+GKLYR+ + + + A S Y
Sbjct: 923 EMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHMEKSGDSGALSSSSAQPSPTY 982
Query: 654 DTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCIME--MAKSFDKKR 711
D D+EV G ++++ A +Y Y+ +L LM+YY + E EIL+G I + D KR
Sbjct: 983 DPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAELEDEILTGNIRNKMLYLKRDNKR 1042
Query: 712 DLEA---IIFAVKSLKKEARAWFNKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEG 768
E I+ AV +L +EAR W S ED ASAWY V YHP + G
Sbjct: 1043 YFEMKDRIVAAVDALHREARGWL----LSSRKEEDASRMASAWYRVTYHPD-----RRRG 1093
Query: 769 MNRTHFLSFPWCIHDKLIEIKRGKQ 793
F SFPW D L+ IK Q
Sbjct: 1094 ---KRFWSFPWIACDNLLAIKASSQ 1115
>sp|Q9SG02|RDR6_ARATH RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1
SV=1
Length = 1196
Score = 556 bits (1434), Expect = e-157, Method: Compositional matrix adjust.
Identities = 326/771 (42%), Positives = 467/771 (60%), Gaps = 45/771 (5%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLS----PL 108
+ ++++TP++ Y PE+ LSNRV+R Y + FLR++F+DE + + S VLS P+
Sbjct: 411 IRRLVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPI 470
Query: 109 I---SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTA 165
+ +S++ + T +++RV S L +G + +K+ LAFS +Q++D S W FA +
Sbjct: 471 VKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRV 530
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEI-IPDVEVEDDGITYCFS 224
+DI+ MG F+D KNVAK AAR+G F S+ + V +++ +PD+E Y FS
Sbjct: 531 SDIKTWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNG----YVFS 585
Query: 225 DGIGKISAELAEIVAKNCGFTI-YTPSAFQIRYGGYKGVVAVDPTSS--TKLSLRKSMLK 281
DGIG I+ +LA+ V + + Y+P A+QIRY G+KGVVA P+ S +L+LR SM K
Sbjct: 586 DGIGTITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKK 645
Query: 282 YKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKA 341
+ S+ T L+I + +++QP FLNRQ+ITLLS LG+ D +F Q + +L+ IL D A
Sbjct: 646 FFSKHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVA 705
Query: 342 HEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRA 401
E L S E N +L G+KP EP L ML + R + L LR ++RIF+ +GR
Sbjct: 706 FEVLT-ASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRW 764
Query: 402 MMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSG--------ELGVVEGKVVVAKN 453
+MGCLDE G LE GQ F+Q S + ++N C ++ G +L VV+G V +AKN
Sbjct: 765 LMGCLDEAGILEHGQCFIQVS----KPSIEN-CFSKHGSRFKETKTDLEVVKGYVAIAKN 819
Query: 454 PCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIP 513
PCLHPGD+R+L AVDVP LHHM DC++FP KG RPHTNE SGSDLDGD+YFV WD +LIP
Sbjct: 820 PCLHPGDVRILEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIP 879
Query: 514 PLQ--FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKAR 571
P + +P M Y A EK L R + +D+ ++FA + N+ LG ICNAHVVHAD A
Sbjct: 880 PNRKSYPAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAM 939
Query: 572 SNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAV 631
+CL LA+L+ AVDF KTG ++P L+ ++YPDFM K+D Y+S +++G+LYR V
Sbjct: 940 DEECLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRV 999
Query: 632 KDIAPPTATIKS-FTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIK 690
K++ A S + + + YD +E+ GFED I +A+ +K YD +L L+ Y ++
Sbjct: 1000 KEVYDEDAEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQ 1059
Query: 691 TEAEILSGCIMEMAKSFDKKRD--LEAIIFAVKSLKKEARAWF-----NKKNESDSSHED 743
E EI++G I M K KK+ E + + SLKKE R F + +N S+
Sbjct: 1060 KEEEIVTGHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNI 1119
Query: 744 VY-AKASAWYHVAYHPSYWGRYKE----EGMNRTHFLSFPWCIHDKLIEIK 789
+Y KASAWYHV YHP + + E + + LSF W D L IK
Sbjct: 1120 LYEKKASAWYHVTYHPEWVKKSLELQDPDESSHAAMLSFAWIAADYLARIK 1170
>sp|Q8LHH9|SHL2_ORYSJ Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp.
japonica GN=SHL2 PE=2 SV=1
Length = 1218
Score = 545 bits (1405), Expect = e-154, Method: Compositional matrix adjust.
Identities = 310/768 (40%), Positives = 465/768 (60%), Gaps = 42/768 (5%)
Query: 53 VNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVL----SPL 108
V ++++TP++ Y PE+ SNRV+R Y + D FLR++F+DE + L + VL +P+
Sbjct: 436 VRRLVITPTRAYCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQVLNNNVLNSFTAPI 495
Query: 109 IS---STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTA 165
+ S ++ TT+Y+RV L G + +K+ LAFS++Q++D S W FA + T
Sbjct: 496 VKDLMSNFFQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTV 555
Query: 166 ADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSD 225
IR+ MG F KNVAK+AAR+GQ F S+ + + +++ D V ++ Y FSD
Sbjct: 556 EAIRKWMGRFTS-KNVAKHAARMGQCFSSTYATVTMRPDEVDESFDDVVHNE---YIFSD 611
Query: 226 GIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAV--DPTSSTKLSLRKSMLKYK 283
GIGKI+ +LA VA+ T PSA+QIR+ G+KGV+AV T+L LR SM K++
Sbjct: 612 GIGKITPDLALEVAERLQLTDNPPSAYQIRFAGFKGVIAVWQGHGDGTRLFLRPSMRKFE 671
Query: 284 SESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHE 343
S L++++ +K+QP FLNRQ+I LLS+L + D +F + Q ++ L+ IL+D A E
Sbjct: 672 SNHLVLEVVSWTKFQPGFLNRQIIILLSSLNVPDSIFWQMQETMLSNLNNILSDRDVAFE 731
Query: 344 ALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMM 403
L S ++ N +L G++P EP L ML R++ L +L + RIF+ GR +M
Sbjct: 732 VLT-TSCADDGNTAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLLEKARIFVPKGRWLM 790
Query: 404 GCLDETGTLESGQVFVQCSASRRREFLDN-----SCNNRSGELGVVEGKVVVAKNPCLHP 458
GCLDE G LE GQ F++ + + S +++ E V+ G VV+AKNPCLHP
Sbjct: 791 GCLDELGVLEQGQCFIRATVPSLNSYFVKHGSRFSSTDKNTE--VILGTVVIAKNPCLHP 848
Query: 459 GDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ-- 516
GD+R+L AVDVP LHH+VDC+VFP KG+RPH NE SGSDLDGD+YFV WD +LIPP +
Sbjct: 849 GDVRILEAVDVPELHHLVDCLVFPQKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKS 908
Query: 517 FPPMDYTPAPEKVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCL 576
+ PMDY+P K L R ++ D+ ++F +++++LG ICNAHVVHADL A +C+
Sbjct: 909 WNPMDYSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAMDEKCI 968
Query: 577 ELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLYRAVKDIAP 636
LA+L+ AVDF KTG A +P L+ ++YPDFM K+D Y+S++++G+LYR++++
Sbjct: 969 HLAELAATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSIQE--- 1025
Query: 637 PTATIKSFTKEVAMQS---YDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEA 693
+ ++EV + YD D+EV G D++ A++ K YD +L L+ Y ++TEA
Sbjct: 1026 -ASNGDVVSQEVCTPNDLPYDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQYRVRTEA 1084
Query: 694 EILSGCIMEMAKSFDKKR-DL-EAIIFAVKSLKKEARAWF-----NKKNESDSSHEDVY- 745
E+++G I + K+ KK+ D+ + + A +L+KE ++ F ++ D +Y
Sbjct: 1085 ELVTGHITFLVKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIGDDEKNLLYE 1144
Query: 746 AKASAWYHVAYHPSY----WGRYKEEGMNRTHFLSFPWCIHDKLIEIK 789
KASAWY V YHP + G +G LSF W D L IK
Sbjct: 1145 MKASAWYQVTYHPKWVEKSRGILGPDGEEIPASLSFAWIPVDYLARIK 1192
>sp|O14227|RDR1_SCHPO RNA-dependent RNA polymerase 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rdr1 PE=1 SV=1
Length = 1215
Score = 345 bits (884), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 243/785 (30%), Positives = 402/785 (51%), Gaps = 75/785 (9%)
Query: 51 IYVNKVLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLIS 110
I++ K+ VTP+ + + NRV+R++ D + F+R+ DE + +
Sbjct: 452 IHIKKLYVTPTTLRIVEDSLEAGNRVIRNFKDFANRFMRVQITDEYYKQ-------KIRG 504
Query: 111 STNEERHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRE 170
++ R+ +Y R+ L GI +G++ +E LAF NSQ++++ + FAS +L A IRE
Sbjct: 505 GSDGFRNEKLYSRIQQLLTYGIKVGNQIYEFLAFGNSQLREHGAYFFASGSDLNAKQIRE 564
Query: 171 SMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGI--TYCFSDGIG 228
MGDF +I +V+KYAAR+GQ F +++E D+ ++DD + +CF+DG+G
Sbjct: 565 WMGDFSEINSVSKYAARMGQCFSTTKEI-------NRFCVDISLQDDIVRNNHCFTDGVG 617
Query: 229 KISAELAEIVAKNCGFTIYTPSAFQIRYGGYKGVVAVDPTSSTKLSL--------RKSML 280
S + ++ PSAFQ R GGYKGV+++ P TKL R+S
Sbjct: 618 MASLSVIRRLSLEVKNHDMFPSAFQFRMGGYKGVLSLAP--PTKLEYHQGNLVFPRRSQD 675
Query: 281 KYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLK 340
K+KS ++L+++ S++ LN QLITLL LG+ VF + R +++++ + K
Sbjct: 676 KFKSFHSTLEVIKISRFSNAHLNMQLITLLEGLGVEKTVFLELTRSQLSKMNESINSKQK 735
Query: 341 AHEAL-ELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNG 399
+ L + + +T ++ + + G+ + F +L + L ++ + ++ + G
Sbjct: 736 SILMLRDNVDEYHSTLIIADFIQAGFLERDDAFTENLLNLYYEWVLRLIKEKQKVSVPKG 795
Query: 400 RAMMGCLDETGTLESG---------QVFVQCSASRRREFLDNSCNNRSGELG-----VVE 445
++G DETGTL+ ++F+Q + D S + S G V+
Sbjct: 796 AYLLGVADETGTLKGHYDDAVLSVPEIFIQIT--------DTSTSFGSYSTGKLKTRVIV 847
Query: 446 GKVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFV 505
G +VA+NP LHPGD+RV +AV L H+ + +VFP G R CSG DLDGD Y V
Sbjct: 848 GLCIVARNPSLHPGDVRVCKAVRCDELMHLKNVIVFPTTGDRSIPAMCSGGDLDGDEYTV 907
Query: 506 CWDHELIPPL-QFPPMDYTPAPEK---VLARDMTIEDVEEYFADYIVNDSLGVICNAHVV 561
WD L+P + +PP+ +P+K L I+ V+E+F +YI DSLG+I NA
Sbjct: 908 IWDQRLLPKIVNYPPL-LESSPKKSIDFLEGKPLIDSVKEFFVNYIKYDSLGLISNAWKA 966
Query: 562 HA---DLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCY 618
A D P+ N CLELA++ + AVDF+K+GVA + + + YPDFM+K +
Sbjct: 967 WAHDHDNNPEGIFGNVCLELAEMHSKAVDFAKSGVACKMQAKYHPKRYPDFMQKTKTRSF 1026
Query: 619 ESQRVIGKLYRAVKDIAPPTATIKSFTKEVAMQSYDTDMEVDGFE-DYITDAFKYKTEYD 677
S+ +GK++R + ++ + YD M++ F+ +Y+ A + K YD
Sbjct: 1027 RSETAVGKIFRYAARFQRESGRPATYN-PIMNTVYDPCMKLPRFKTEYLNVAEEVKKHYD 1085
Query: 678 NRLGNLMDYYGIKTEAEILSGCIM---EMAKSFDKKRDLEAIIFAVKSLKKEARAWFNKK 734
N L ++M + I TE E+ + I+ ++AK+ ++ E + F LKK+ + +K
Sbjct: 1086 NDLRSIMARFDISTEYEVYTAFILFKDDLAKTVNEYGLREEVSFQFDLLKKKYTQEYLEK 1145
Query: 735 ----NES--DSS--HEDVYAKASAWYHVAYHPSYWGRYKEEGMNRTHFL-SFPWCIHDKL 785
N+S DSS E + + +A Y V Y R K G T L SFP+ +L
Sbjct: 1146 CALSNQSAFDSSEYEERINSAVAATYDVTYDQ----RVKSVGNGTTEVLISFPYLFSSRL 1201
Query: 786 IEIKR 790
++ R
Sbjct: 1202 CQLSR 1206
>sp|O82188|RDR5_ARATH Probable RNA-dependent RNA polymerase 5 OS=Arabidopsis thaliana
GN=RDR5 PE=2 SV=2
Length = 977
Score = 96.7 bits (239), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 147/607 (24%), Positives = 250/607 (41%), Gaps = 111/607 (18%)
Query: 110 SSTNEERHTTIYERVLSTLRNGIVIGDKKFETLAF------------SNSQVK------D 151
SST H Y+ + +NGI+IG ++++ F S +VK D
Sbjct: 256 SSTYSIDHYFTYKGIA---KNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKKVKCYFIRTD 312
Query: 152 NSMWMFASRPE-LTAADIRESMGDFRDIK---NVAKYAARLGQSFGSSREALHVDSSDIE 207
++ + P LT I E+ F + +A Y AR S + L VD + I
Sbjct: 313 STAFYDMQNPYILTGKSIYEARMHFMHVHRAPTLANYMARFSLIL-SKTKTLEVDMTGIT 371
Query: 208 I--IPDVEVED-DGITY-------CF-SDGIGKISAELAEIVAKNC--GFTIYTPS---- 250
I D+ D DG C SDG G IS +LA + N G + + S
Sbjct: 372 FDQIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGKCLRSESIQEA 431
Query: 251 ---------AFQIRYGGY--KGVVAVDPTSSTK-LSLRKSMLKYKSEST--------SLD 290
F++ Y GY KG ++ + + +R SM+K + + +L+
Sbjct: 432 CYQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALE 491
Query: 291 ILANSKY-QPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMS 349
++ S + L++ L+ LLS GI + F + + +I + A A
Sbjct: 492 VVTTSNPPKRTKLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKRAALNAALNYG 551
Query: 350 SGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDET 409
++ N ++++ G D EP L L + +L+ ++ + +MG +D T
Sbjct: 552 EMDDQNA-AQMILVGIPLD-EPHLKNYLSILLKTEKNDLKA-GKLPVTESYYLMGTVDPT 608
Query: 410 GTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVDV 469
G L+ +V V E G + G+V+V +NP LH GD+ +L+A V
Sbjct: 609 GALKEDEVCVIL------------------ESGQISGEVLVYRNPGLHFGDIHILKATYV 650
Query: 470 PSLHHMVD----CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQF--PPMDYT 523
+L V V FP KG R +E +G D DGD+YF+ + EL+ + P + T
Sbjct: 651 KALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLENFKPSEPWVSLT 710
Query: 524 P-------------APEKVLARDMTIEDVEEYFADYIVN---DSLGVICNAHVVHAD--L 565
P +PE++ + + A ++ DS I + ++ D
Sbjct: 711 PPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRFLILGDDRA 770
Query: 566 EPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIG 625
E + LEL + A+D K G +P+ L+ +I+P +ME+ K ++S ++G
Sbjct: 771 EEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERDKK--FQSTSILG 828
Query: 626 KLYRAVK 632
++ VK
Sbjct: 829 LIFDFVK 835
>sp|O82190|RDR3_ARATH Probable RNA-dependent RNA polymerase 3 OS=Arabidopsis thaliana
GN=RDR3 PE=3 SV=2
Length = 992
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 155/681 (22%), Positives = 262/681 (38%), Gaps = 140/681 (20%)
Query: 120 IYERVLSTLRNGIVIGDKKFETLAF-------------------------SNSQVKDNSM 154
+Y +NGI++G +++ F S + + +
Sbjct: 267 LYSTYKGIAKNGIMVGLRRYRFFVFKDGGKEEKKKDVSTKGVKCYFIRTDSTASIDMQNP 326
Query: 155 WMFASRPELTAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDI--EIIPDV 212
++FA + + + R + ++ Y +R S + L VD + I E I D+
Sbjct: 327 YIFAGK---SMHEARMHFMHVNTLSSLPNYMSRFSLIL-SKTKTLEVDMTGITFEQIDDI 382
Query: 213 EVED---------DGITYCFSDGIGKISAELA----------------EIVAKNCGFTIY 247
D +G SDG G IS +LA I +KN F
Sbjct: 383 HCHDQDDKDVLDKNGKPCIHSDGTGYISEDLARMCPVNIFKGKSMRSNNIQSKNLNFEGQ 442
Query: 248 TPSA--------FQIRYGGY--KGVVAVDPTSSTK-LSLRKSMLKYKSEST--------S 288
P F+I Y GY KG + + + +R SM+K + T S
Sbjct: 443 GPCGQEPPLLIQFRIFYNGYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNS 502
Query: 289 LDILANSKY-QPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALEL 347
L+++ S + L+R L+ LLS G+ + F R + + I A +A
Sbjct: 503 LEVVTTSNPPRKARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAA-- 560
Query: 348 MSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLD 407
++ G++ ++++ G D EP+L L + L+ R I +MG +D
Sbjct: 561 INYGDD-QYTADMILVGIPLD-EPYLKDRLSYLLKTERNALKA-GRFPIDESYYIMGTVD 617
Query: 408 ETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAV 467
TG L+ ++ V + G + G V+V +NP LH GD+ VL+A
Sbjct: 618 PTGELKENEICVILHS------------------GQISGDVLVYRNPGLHFGDIHVLKAT 659
Query: 468 DVPSLHHMVD----CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ-FPPMDY 522
V +L V V FP KG R +E +G D DGD+YF+ + +L+ + P
Sbjct: 660 YVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVS 719
Query: 523 TPAPEKVLARDMTIEDVEEYF----------ADYIVNDSLGVICNAHVVHAD----LEPD 568
+ P K+ E EE A + D +G+ + + D L +
Sbjct: 720 SSKPSKIYCGRKPSELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDE 779
Query: 569 KA-----RSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRV 623
A R L+L + A+D K G +P L ++ +P +ME+ K + S +
Sbjct: 780 SAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSI 839
Query: 624 IGKLYRAVKDI---APPTATIKS---FTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYD 677
+G ++ V PP + I F E +S+ D +E+Y ++ + E D
Sbjct: 840 LGLIFDTVDSHNAEEPPPSEISKLWYFEDEPVPKSH-MDKFTSWYENYRSEMSQAMMETD 898
Query: 678 ----NRLGNLM------DYYG 688
N+L N + D+YG
Sbjct: 899 KVKRNQLTNEVIQRYKQDFYG 919
>sp|O82189|RDR4_ARATH Probable RNA-dependent RNA polymerase 4 OS=Arabidopsis thaliana
GN=RDR4 PE=3 SV=2
Length = 927
Score = 87.0 bits (214), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 140/605 (23%), Positives = 248/605 (40%), Gaps = 132/605 (21%)
Query: 121 YERVLSTLRNGIVIGDKKFETLAF------------SNSQVKDNSMWMFASRPE------ 162
Y + +NGI++G ++++ F S QVK + ++
Sbjct: 268 YSKYKEIAKNGIMVGLRRYQFFVFKDGGKAEKKKRNSTKQVKCYFIRTGSTASSDMENPY 327
Query: 163 -LTAADIRESMGDFRDIKNV---AKYAARLGQSFGSSREALHVDSSDIEI--IPDVEVED 216
L+ I E+ F + + A Y AR +++ L VD ++I + I D+ D
Sbjct: 328 ILSGMSIHEARMHFMHVHTLPSPANYMARFSLILSKTKK-LEVDMTEITVMQIDDIHCHD 386
Query: 217 ---------DGITYCFSDGIGKISAELAEIVAKNCGFTIYT-----------------PS 250
+G SDG G IS +LA + C I+ P
Sbjct: 387 QSNNDVLDKNGKPRIHSDGTGYISEDLARM----CPLNIFKGKSMRSNNIQGTCVQEPPL 442
Query: 251 AFQIRY----GGYKGVVAVDPTSSTK-LSLRKSMLK-YKSES-------TSLDILANSKY 297
QIR KG+ ++ + + +R SM+K YK ++ SL+++ S
Sbjct: 443 LIQIRMFNDGSAVKGIFLLNKNLPPQTVQVRPSMIKVYKDKNLSNFSTFNSLEVVTTSNP 502
Query: 298 -QPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNV 356
+ L++ L+ LLS G+ + F + + I A +A + ++ N
Sbjct: 503 PKRAKLSKNLVALLSYGGVPNDFFLDILLNTLEKKKTIFFKVRAAGKAALHYGNMDDKNA 562
Query: 357 LKELLMCGYKPDVEPFLLMMLQTFRASNLLELRT----RTRIFIQNGRAMMGCLDETGTL 412
L +++M G D EP+L L S LL+L ++ I +MG +D TG L
Sbjct: 563 L-QMIMAGIPLD-EPYLKHYL-----SKLLKLEKDDLKAGKLPIDESYYLMGTVDPTGEL 615
Query: 413 ESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGK-VVVAKNPCLHPGDMRVLRAVDVPS 471
+ +V G+ + + V+V +NP LH GD+ +L+A V S
Sbjct: 616 KEDEVS-----------------------GLAKSQDVLVYRNPGLHFGDIHILKATYVKS 652
Query: 472 LHHMVD----CVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELI---PPLQFPPMDYTP 524
L V V FP KG R +E +G D DGD+YF+ + +L+ P + P + +P
Sbjct: 653 LEQYVGNSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHYKPSE-PWVSSSP 711
Query: 525 APEKVLAR---DMTIEDVEEYFADYIVN-------------DSLGVICNAHVVHAD--LE 566
+ R +++ E +EE + DS I + + D ++
Sbjct: 712 RSKIYTGRQPSELSPEQLEEELFKIFLKTGFSPSSVIGQAADSWLAIMDRFLTLGDENVK 771
Query: 567 PDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGK 626
+ L+L + A+D KTG +P ++V+++P +ME+ +KT ++S ++G
Sbjct: 772 EKAEMKKKMLKLTDIYYDAIDAPKTGTEVNLPLDVKVDLFPHYMER-NKT-FKSTSILGL 829
Query: 627 LYRAV 631
++ V
Sbjct: 830 IFDTV 834
>sp|Q5QMN4|RDR4_ORYSJ Probable RNA-dependent RNA polymerase 4 OS=Oryza sativa subsp.
japonica GN=RDR4 PE=2 SV=2
Length = 1183
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 139/570 (24%), Positives = 216/570 (37%), Gaps = 129/570 (22%)
Query: 164 TAADIRESMGDFRDIKNVAKYAARLGQSFGSSREALHVDSSDI--EIIPD--------VE 213
T R+ R + +AKY R S L VD S++ ++I D E
Sbjct: 495 TIGQARDLFMHIRTVLTLAKYMLRFAL-IVSKTITLDVDLSEVLVKLIDDEPCLDEHGKE 553
Query: 214 VEDDGITYCFSDGIGKISAELAE--------------------IVAKNCGFTIYT--PSA 251
V DG +DG G IS +LA+ +K G T P
Sbjct: 554 VFRDGERLIHTDGTGLISEDLAQKCTYSNSKGKLLEPQDIVDCAASKLMGSNNTTEYPLL 613
Query: 252 FQIR--YGG--YKGVVAVDPTSSTK-LSLRKSMLKYKS--------ESTSLDILA----- 293
Q+R Y G KG V VD + + +R SMLK K+ SLDI++
Sbjct: 614 IQLRLFYNGSAVKGTVLVDKRLPPRTIHIRPSMLKIKTYPELSGVQSVNSLDIVSARNAK 673
Query: 294 -----------------NSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILT 336
+++ F + LI LL G+ + F + + + + D
Sbjct: 674 KSLSGVQSVNSFEIVSTSNRSGRTFTSNNLIALLHYGGVPEEFFMELLQTAIEEADNARF 733
Query: 337 DPLKAHEALELMSSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFI 396
D A + E++ + +++ G + + +++ S L L R I
Sbjct: 734 DYAGALNIAFNYADMEDS-MPARMILSG---------IPLEESYLQSRLDFLSLLERKGI 783
Query: 397 QNGRA-------MMGCLDETGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVV 449
+NG+ +MG D TG L +V V LD G V G V+
Sbjct: 784 KNGKIPIDDCYYLMGTADPTGKLGPNEVCV---------ILD---------YGQVSGDVL 825
Query: 450 VAKNPCLHPGDMRVLRAVDVPSLHHMVD----CVVFPAKGKRPHTNECSGSDLDGDVYFV 505
V K P LHPGD+ VL+A + +V ++FP G+R +E + SD DGD+Y+V
Sbjct: 826 VYKYPGLHPGDIHVLKATYSSDIEKVVGNSKHAILFPTTGQRSLADEMANSDFDGDIYWV 885
Query: 506 CWDHELIPPLQFPPMDYTPAPEKVLARDMTIEDVEE------YFADYI------------ 547
+ +L+ + P + PA + ED E F +++
Sbjct: 886 SLNPKLLEHFK-PSKPWVPAITPNGTKQKGPEDFNESELERVLFHEFLKTRFAPSYARAT 944
Query: 548 -VNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIY 606
+ L + V D K + L+L L +A+D K G IP L V+ Y
Sbjct: 945 AATNWLVYMDRLLTVSLDESEKKLIEKKMLKLVDLYYLALDAPKMGNKVNIPRDLMVKQY 1004
Query: 607 PDFMEKQDKTCYESQRVIGKLYRAVKDIAP 636
P FM++ Y S ++GK+Y D P
Sbjct: 1005 PHFMDRS--PSYHSSSILGKIYDKAGDPKP 1032
>sp|Q5QMN5|RDR3_ORYSJ Probable RNA-dependent RNA polymerase 3 OS=Oryza sativa subsp.
japonica GN=RDR3 PE=2 SV=2
Length = 1153
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 119/490 (24%), Positives = 197/490 (40%), Gaps = 100/490 (20%)
Query: 214 VEDDGITYCFSDGIGKISAELAEIVAKNCGFTIY-------TPSAFQIR--YGG--YKGV 262
V D +DG G +S +LA NC +I+ P Q R Y G KG
Sbjct: 552 VHKDQEPLIHTDGTGLVSVDLA----LNCPTSIFKGKFLKPQPLLMQFRLFYNGSAVKGT 607
Query: 263 VAVD---PTSSTKLSLRKSMLKYKSES-----------------------------TSLD 290
V VD P ++ + +R SM+K ++ S +
Sbjct: 608 VLVDRRLPPAT--ILIRPSMVKIETHPELSGVRSVNSSEIVSARNAKKSLSGVQSVNSFE 665
Query: 291 ILANS-KYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALEL-M 348
I++ S + + +R LITLL G+ + F + + + + D +AL +
Sbjct: 666 IVSTSNRPRRTLTSRFLITLLCYGGVPEEYFLELLQSAIEGAENACYD---YEDALRIAF 722
Query: 349 SSGENTNVLKELLMCGYKPDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDE 408
S + + + ++ P E +L L F A + + +I I +M D
Sbjct: 723 SYADMEDSMSARMILSGIPLEESYLQHRLD-FMAQQERKGIKQGKIPIDECYYLMDTTDP 781
Query: 409 TGTLESGQVFVQCSASRRREFLDNSCNNRSGELGVVEGKVVVAKNPCLHPGDMRVLRAVD 468
TGTL +V V L+N G G V+V K+P LH GD+ VL+A
Sbjct: 782 TGTLRPNEVCV---------ILEN---------GQFSGDVLVYKHPGLHFGDIHVLKATY 823
Query: 469 VPSLH-----HMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQFPPMDYT 523
+ L + ++FP G R +E + SD DGD+Y+V + +L+ + P +
Sbjct: 824 IRDLEKEYVGYAKYAILFPISGPRSLADEMANSDFDGDIYWVSKNPKLLEHFK-PSEPWV 882
Query: 524 PAPEKVLARDMTIEDVEE------YFADYIVND-----SLGVICNAHVVHAD-LEPD--- 568
A + + +D E F +++ +LG ++ + + D L D
Sbjct: 883 QAIKPKKTKQKKPQDCNESKLERLLFHEFLKTRFTPSFALGTAADSWLAYMDRLLTDSLD 942
Query: 569 ----KARSNQCLELAKLSTIAVDFSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVI 624
K + L+L L +A+D KTG IPS L V+ YP FM + Y S ++
Sbjct: 943 EIEKKLIEEKMLKLVDLYYLALDAPKTGNKVNIPSDLMVKQYPHFMGR--SFSYHSSSIL 1000
Query: 625 GKLYRAVKDI 634
G++Y +D+
Sbjct: 1001 GQIYDKAEDV 1010
>sp|Q5NAI4|PLA5_ORYSJ Phospholipase A1-II 5 OS=Oryza sativa subsp. japonica
GN=Os01g0710700 PE=2 SV=1
Length = 465
Score = 37.4 bits (85), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 44/110 (40%), Gaps = 12/110 (10%)
Query: 528 KVLARDMTIEDVEEYFADYIVNDSLGVICNAHVVHADLEPDKARSNQCLELAKLSTIAVD 587
K ARD + V E A Y N+SLGV+C H + A L L +
Sbjct: 202 KYSARDQMLAAVRELVARY-RNESLGVVCTGHSLGASLA----------TLCAFDIVVNG 250
Query: 588 FSKTGVAATIPSGLRVEIYPDFMEKQDKTCYESQRVIGKLY-RAVKDIAP 636
SK G A IP V P + K +E Q + L+ R + D+ P
Sbjct: 251 VSKVGDGAHIPVTAVVFGSPQIGNPEFKKQFEEQPNLRALHVRNMPDLIP 300
>sp|Q9QJ11|GP105_HHV6Z Glycoprotein 105 OS=Human herpesvirus 6B (strain Z29) GN=U100 PE=4
SV=1
Length = 616
Score = 34.7 bits (78), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 85/214 (39%), Gaps = 31/214 (14%)
Query: 195 SREALHVDSSDIEIIPDVEVED--------DGITYCFSDGIGKISAE--LAEIVAKNCGF 244
S +H D+ +E P + ED D I + DG L EI++K
Sbjct: 22 SNATVHRDAGTVESTPPPDDEDNYTAKYYDDSIYFNIYDGTNPTPRRRTLPEIISK---- 77
Query: 245 TIYTPSAFQIRYGGYKGVVAVDPTSSTKLSLRKSMLKYK-SESTSLDILANSKYQPCFLN 303
++ S R GG K V VD T +T L + +L Y + S L ++ + F +
Sbjct: 78 --FSTSEMS-RLGGLKAFVPVDYTPTTTLEDIEDLLNYAICDDNSCGCLIETEARIMFGD 134
Query: 304 RQLITLLS--TLGIRDHVFEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELL 361
+ LS + G+R+ K R L IL+ L H +L + G N N L
Sbjct: 135 IIICVPLSAESRGVRN----LKSRIMPMGLSQILSSGLGLHFSLLYGAFGSNYNSL---- 186
Query: 362 MCGYKPDVEPFLLMMLQTF-RASNLLELRTRTRI 394
Y ++P M F ++ LELR R+
Sbjct: 187 --AYMERLKPLTAMTAIAFCPMTSKLELRQNYRL 218
>sp|Q5K2P2|K1C15_PROAT Keratin, type I cytoskeletal 15 (Fragment) OS=Protopterus
aethiopicus GN=KRT15 PE=1 SV=1
Length = 441
Score = 33.5 bits (75), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 641 IKSFTKEVAMQSYDTDMEVDGFEDYITDAFKYKTEYDNRLGNLMDYYGIKTEAEILSGCI 700
+K E+A+ DTDM+++G D + D K E D + + + E + G
Sbjct: 202 LKRVLDELALAKADTDMQIEGLRDEL-DYLKKNHEEDMKAASSGIAGQVNVELDAAPGT- 259
Query: 701 MEMAKSFDK-KRDLEAIIFAVKSLKKEARAWFNKK 734
+ D +RD EA++ +++EA W+N+K
Sbjct: 260 -NLLDELDACRRDHEAML---DQMRREAERWYNEK 290
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 291,076,104
Number of Sequences: 539616
Number of extensions: 12356834
Number of successful extensions: 29984
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 29900
Number of HSP's gapped (non-prelim): 29
length of query: 795
length of database: 191,569,459
effective HSP length: 126
effective length of query: 669
effective length of database: 123,577,843
effective search space: 82673576967
effective search space used: 82673576967
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)