Query 003789
Match_columns 795
No_of_seqs 250 out of 485
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 04:05:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003789.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003789hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1b64a_ d.58.12.1 (A:) Guanine 40.4 18 0.0013 29.4 5.2 58 117-177 21-78 (91)
2 d1gh8a_ d.58.12.1 (A:) aEF-1be 40.2 12 0.00086 30.4 4.0 59 117-178 19-77 (89)
3 d1f60b_ d.58.12.1 (B:) Guanine 36.5 12 0.00088 30.5 3.4 58 117-177 20-77 (90)
4 d1smyd_ e.29.1.2 (D:) RNA-poly 34.3 10 0.00076 45.7 3.8 52 443-506 693-747 (1504)
5 d1twfa_ e.29.1.2 (A:) RBP1 {Ba 24.8 17 0.0012 43.6 3.4 52 443-506 435-489 (1449)
6 d1jjcb2 a.6.1.1 (B:400-474) Do 16.0 67 0.0049 24.5 4.1 67 163-249 7-74 (75)
7 d1aoya_ a.4.5.3 (A:) Arginine 10.5 3.3E+02 0.024 20.7 7.9 59 343-411 16-75 (78)
8 d2cosa1 a.5.2.1 (A:8-48) Serin 9.3 1.6E+02 0.012 19.6 3.6 19 302-320 1-19 (41)
9 d2hf5a1 a.39.1.5 (A:81-113) Tr 7.9 57 0.0042 21.3 0.9 20 224-243 14-33 (33)
10 d1gtma2 c.58.1.1 (A:3-180) Glu 7.3 43 0.0031 30.4 -0.0 16 254-269 96-111 (178)
No 1
>d1b64a_ d.58.12.1 (A:) Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.40 E-value=18 Score=29.35 Aligned_cols=58 Identities=19% Similarity=0.316 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHhcCeEEcceeEEEeeecCCCCcCCeEEEEecCCCCCHHHHHHHhCCCCC
Q 003789 117 HTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRD 177 (795)
Q Consensus 117 ~~~~~~rv~~~L~~Gi~I~gr~y~fL~~S~SqlR~~s~wf~~~~~~~~~~~Ir~~lG~f~~ 177 (795)
...+.+.++.++.+|+.++....+.+||+ |+.=.+.|.-++...+.+++.+-+..+..
T Consensus 21 l~~l~~~vk~i~~~gl~wg~~k~~PIaFG---lkkL~i~~vveDd~~~~D~lee~i~~~Ed 78 (91)
T d1b64a_ 21 MAKLEECVRSIQADGLVWGSSKLVPVGYG---IKKLQIQCVVEDDKVGTDMLEEQITAFED 78 (91)
T ss_dssp HHHHHHHHHHCCCTTCEEEEEEEEESSSS---CEEEEEEEEECTTSSCHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhccccCcEeeEEEEEEEee---eeeEEEEEEEEeCCcChHHHHHHHHhhcC
Confidence 56778899999999999999999999998 77777777777777888999888876653
No 2
>d1gh8a_ d.58.12.1 (A:) aEF-1beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=40.20 E-value=12 Score=30.43 Aligned_cols=59 Identities=12% Similarity=0.195 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHhcCeEEcceeEEEeeecCCCCcCCeEEEEecCCCCCHHHHHHHhCCCCCc
Q 003789 117 HTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRDI 178 (795)
Q Consensus 117 ~~~~~~rv~~~L~~Gi~I~gr~y~fL~~S~SqlR~~s~wf~~~~~~~~~~~Ir~~lG~f~~i 178 (795)
.+.+.+.++.++..|+.+++...+.+||+ |+.=.+.++-++.....+.+-+-+..+...
T Consensus 19 l~~l~~~ik~~~~~g~~~~~~~~~PiaFG---Lk~L~v~~vv~D~~g~~D~lee~i~~ie~V 77 (89)
T d1gh8a_ 19 LEALKKEIQERIPEGTELHKIDEEPIAFG---LVALNVMVVVGDAEGGTEAAEESLSGIEGV 77 (89)
T ss_dssp HHHHHHHHHHHSCTTSEECCCCEEECSSS---CEEEEEEEEESSSCGGGGHHHHHHTTSCSS
T ss_pred HHHHHHHHHhhccCCcEEEEEEEEEEEcc---eEeEEEEEEEEcCCcChHHHHHHHhccCCC
Confidence 67788999999999999999999999998 777777777777667778887777766543
No 3
>d1f60b_ d.58.12.1 (B:) Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=36.48 E-value=12 Score=30.46 Aligned_cols=58 Identities=16% Similarity=0.296 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHhcCeEEcceeEEEeeecCCCCcCCeEEEEecCCCCCHHHHHHHhCCCCC
Q 003789 117 HTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDFRD 177 (795)
Q Consensus 117 ~~~~~~rv~~~L~~Gi~I~gr~y~fL~~S~SqlR~~s~wf~~~~~~~~~~~Ir~~lG~f~~ 177 (795)
.+.+.+.++.++.+|+.++....+.+||+ |+.=.+.|+-++...+.+++.+-+..+..
T Consensus 20 l~~l~~~ik~i~~~gl~~g~~~~~PiafG---lkkL~i~~vveDd~~~~D~lee~i~~~Ed 77 (90)
T d1f60b_ 20 LEEMVANVKAIEMEGLTWGAHQFIPIGFG---IKKLQINCVVEDDKVSLDDLQQSIEEDED 77 (90)
T ss_dssp HHHHHHHHHTCCCTTEEEEEEEEEEEETT---EEEEEEEEEEETTTCCHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHhCcCccEEeEEEEEEEeee---eeeEEEEEEEEeCCcCHHHHHHHHHhhcC
Confidence 56788899999999999999999999998 77767777777777888888887776653
No 4
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus [TaxId: 274]}
Probab=34.26 E-value=10 Score=45.67 Aligned_cols=52 Identities=29% Similarity=0.475 Sum_probs=38.1
Q ss_pred eeee-eEEEeeCCCCCCCCeeEEEeecCCCCCCCCCeEEecCCCCCCCCCccc--CCCCCCCeEEEE
Q 003789 443 VVEG-KVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECS--GSDLDGDVYFVC 506 (795)
Q Consensus 443 ~i~G-~VlV~RnP~lhPgDIr~v~AV~~P~L~hl~dvIVFp~~G~rplps~ls--GgDlDGD~y~Vi 506 (795)
++.| .|+.-|.|+||.--|+=++++-.|.-. =|=||+-|+ ..|+|||+-.|-
T Consensus 693 li~GD~VL~NRQPTLHR~SImAh~~~l~~gkT------------iRLnp~vC~pyNADFDGDEMNvH 747 (1504)
T d1smyd_ 693 VIHGKVVLLNRAPTLHRLGIQAFQPVLVEGQS------------IQLHPLVCEAFNADFDGDQMAVH 747 (1504)
T ss_dssp HHSSCCEEEECSSCCSGGGEEEEEECCBSSSS------------EEECSGGGTTTTCCSSSCEEEEE
T ss_pred eecCCEEEecCCCccccceeeEEEEEEcCCce------------eeecccccccccCCCCCceEEEe
Confidence 4568 699999999999999999988776410 012333343 379999998874
No 5
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.78 E-value=17 Score=43.65 Aligned_cols=52 Identities=23% Similarity=0.343 Sum_probs=37.8
Q ss_pred eeee-eEEEeeCCCCCCCCeeEEEeecCCCCCCCCCeEEecCCCCCCCCCcc--cCCCCCCCeEEEE
Q 003789 443 VVEG-KVVVAKNPCLHPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNEC--SGSDLDGDVYFVC 506 (795)
Q Consensus 443 ~i~G-~VlV~RnP~lhPgDIr~v~AV~~P~L~hl~dvIVFp~~G~rplps~l--sGgDlDGD~y~Vi 506 (795)
++.| .|++-|.|.||.--|+-.+++-.|. + -=|=+|.-| -..|+|||+-.|-
T Consensus 435 l~~gd~Vl~NRqPtLHr~si~a~~~~v~~~-k-----------tirl~~~vc~~yNADFDGDeMnvh 489 (1449)
T d1twfa_ 435 IMDNDPVLFNRQPSLHKMSMMAHRVKVIPY-S-----------TFRLNLSVTSPYNADFDGDEMNLH 489 (1449)
T ss_dssp CCTTCEEEEECSSCCSGGGEEEEEEEEESS-S-----------SEEECGGGHHHHTCCSSSCEEEEE
T ss_pred EecCeeEEecCccchhhhccccceeEeecC-c-----------eEEeccccccccccccccceEEEE
Confidence 5567 7999999999999999999886653 1 111123333 3689999999876
No 6
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=16.04 E-value=67 Score=24.54 Aligned_cols=67 Identities=18% Similarity=0.273 Sum_probs=45.2
Q ss_pred CCHHHHHHHhC-CCCCccCHHHHHHHHcccccCCcceeeecCCCeEEcCCccccCCCcccccccccccccHHHHHHHHHH
Q 003789 163 LTAADIRESMG-DFRDIKNVAKYAARLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKN 241 (795)
Q Consensus 163 ~~~~~Ir~~lG-~f~~i~~~aK~aARlgq~FS~T~~tv~i~~~~i~~i~Di~~~~~g~~~~fTDG~G~IS~~la~~I~~~ 241 (795)
++.+.+.+-+| +++. ..+.++..|||..++.+..++.+...-+ -.||. +-.+++++|++-
T Consensus 7 l~~~~i~~~lG~~i~~-~~i~~~L~~Lg~~~~~~~~~~~V~vPs~--R~Di~----------------~~~DliEEi~R~ 67 (75)
T d1jjcb2 7 FRPEYANRLLGTSYPE-AEQIAILKRLGCRVEGEGPTYRVTPPSH--RLDLR----------------LEEDLVEEVARI 67 (75)
T ss_dssp ECHHHHHHHHTCCCCH-HHHHHHHHHTTCEEECSSSSEEEECCTT--CTTCC----------------SHHHHHHHHHHH
T ss_pred ECHHHHHHHhCCCCCH-HHHHHHHHHcCCceEecCCcEEEecchh--ccccC----------------CcchHHHHHHHH
Confidence 46788888888 3433 4688999999988776655544433222 24765 125789999999
Q ss_pred cCCCCCCC
Q 003789 242 CGFTIYTP 249 (795)
Q Consensus 242 l~l~~~~P 249 (795)
.|+ +..|
T Consensus 68 ~Gy-d~IP 74 (75)
T d1jjcb2 68 QGY-ETIP 74 (75)
T ss_dssp HCG-GGSC
T ss_pred hCc-cCCC
Confidence 988 4455
No 7
>d1aoya_ a.4.5.3 (A:) Arginine repressor (ArgR), N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=10.53 E-value=3.3e+02 Score=20.72 Aligned_cols=59 Identities=12% Similarity=0.059 Sum_probs=39.7
Q ss_pred HHHHhcCCCCcHHHHHHHHHCCCC-CCCcHHHHHHHHHHHHHHHHHhhcceeEEecCceeeeeecCCCCC
Q 003789 343 EALELMSSGENTNVLKELLMCGYK-PDVEPFLLMMLQTFRASNLLELRTRTRIFIQNGRAMMGCLDETGT 411 (795)
Q Consensus 343 ~~l~~~~~~~~~~~l~~ll~~Gf~-~~~epfl~~~l~~~~~~~l~~lk~k~rI~Vp~s~~l~GV~DetG~ 411 (795)
+++.....+...+++..|...||. .++-- ...-|++|. -.+++..+|.+.|.++++.++
T Consensus 16 ~li~~~~i~tQ~eL~~~L~~~G~~~vTQaT---------iSRDL~eLg-~vKv~~~~g~~~Y~lp~e~~~ 75 (78)
T d1aoya_ 16 ALLKEEKFSSQGEIVAALQEQGFDNINQSK---------VSRMLTKFG-AVRTRNAKMEMVYCLPAELGV 75 (78)
T ss_dssp HHHHTCCCCSHHHHHHHHHHHTCSSCCHHH---------HHHHHHHHT-CEEEECTTSCEEEECCSSCCC
T ss_pred HHHHhCCcCCHHHHHHHHHHcCCcchhHHH---------HHHHHHHhC-CEEeeCCCCCEEEEeCCCCCC
Confidence 456666666777888888899995 54321 223344553 356777789999999988764
No 8
>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.28 E-value=1.6e+02 Score=19.55 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=13.1
Q ss_pred ccHHHHHHHhcCCCChHHH
Q 003789 302 LNRQLITLLSTLGIRDHVF 320 (795)
Q Consensus 302 LNrq~I~iL~~lGV~~~vF 320 (795)
.|||++.=|..-|...+..
T Consensus 1 vnRQMlqdl~~aG~D~~m~ 19 (41)
T d2cosa1 1 VNRQMLQELVNAGCDQEMA 19 (41)
T ss_dssp CCHHHHHHHHHHHCCHHHH
T ss_pred CcHHHHHHHHHcCCCHHHH
Confidence 4788888777777665543
No 9
>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}
Probab=7.89 E-value=57 Score=21.26 Aligned_cols=20 Identities=45% Similarity=0.461 Sum_probs=15.5
Q ss_pred ccccccccHHHHHHHHHHcC
Q 003789 224 SDGIGKISAELAEIVAKNCG 243 (795)
Q Consensus 224 TDG~G~IS~~la~~I~~~l~ 243 (795)
.||-|.||.+=.+.|...+|
T Consensus 14 kDg~G~Is~~EL~~vm~~lG 33 (33)
T d2hf5a1 14 KDGNGYISAAELRHVMTNLG 33 (33)
T ss_dssp SSCCSCBCHHHHHHHTTSCC
T ss_pred CCCCCcCcHHHHHHHHHHcC
Confidence 38999999988888766544
No 10
>d1gtma2 c.58.1.1 (A:3-180) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=7.29 E-value=43 Score=30.39 Aligned_cols=16 Identities=50% Similarity=0.908 Sum_probs=13.9
Q ss_pred EeecCceEEEEeCCCC
Q 003789 254 IRYGGYKGVVAVDPTS 269 (795)
Q Consensus 254 iR~~G~KGvl~vdp~~ 269 (795)
+.+||+||.+.+||..
T Consensus 96 lp~GG~Kggi~~dP~~ 111 (178)
T d1gtma2 96 LPYGGGKGGIIVDPKK 111 (178)
T ss_dssp CSCEEEEEEEECCGGG
T ss_pred CCCCCCceeEecCCCC
Confidence 3589999999999974
Done!