Query 003790
Match_columns 795
No_of_seqs 414 out of 1602
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 12:05:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003790.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003790hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1116 Sphingosine kinase, in 100.0 3.7E-72 8.1E-77 627.0 38.2 558 66-789 1-566 (579)
2 PLN02958 diacylglycerol kinase 100.0 5.1E-62 1.1E-66 553.5 44.9 427 162-789 24-465 (481)
3 PLN02204 diacylglycerol kinase 100.0 7.7E-56 1.7E-60 504.4 43.6 453 151-792 67-600 (601)
4 KOG1115 Ceramide kinase [Lipid 100.0 2.6E-50 5.7E-55 431.3 22.6 383 191-793 110-512 (516)
5 PRK11914 diacylglycerol kinase 100.0 1.3E-47 2.8E-52 412.3 33.9 295 277-789 7-303 (306)
6 PRK13059 putative lipid kinase 100.0 1.4E-45 3E-50 395.5 35.0 289 278-788 1-291 (295)
7 PRK13337 putative lipid kinase 100.0 9.8E-46 2.1E-50 397.9 32.6 291 278-788 1-292 (304)
8 PRK13055 putative lipid kinase 100.0 3E-45 6.5E-50 399.5 33.9 294 278-788 2-299 (334)
9 PRK13057 putative lipid kinase 100.0 1.9E-44 4.2E-49 384.7 33.8 282 282-788 1-283 (287)
10 PRK00861 putative lipid kinase 100.0 3.1E-44 6.7E-49 385.1 33.6 288 278-788 2-295 (300)
11 TIGR00147 lipid kinase, YegS/R 100.0 6.2E-43 1.3E-47 373.1 34.5 289 278-787 1-292 (293)
12 PRK13054 lipid kinase; Reviewe 100.0 5.1E-43 1.1E-47 376.1 33.8 290 277-788 2-292 (300)
13 TIGR03702 lip_kinase_YegS lipi 100.0 1.2E-42 2.6E-47 372.1 34.0 284 280-788 1-286 (293)
14 COG1597 LCB5 Sphingosine kinas 100.0 8.7E-42 1.9E-46 367.7 30.9 294 277-790 1-296 (301)
15 PRK12361 hypothetical protein; 100.0 1.2E-37 2.7E-42 359.9 32.6 179 276-470 240-423 (547)
16 PF00781 DAGK_cat: Diacylglyce 99.9 2.8E-23 6E-28 197.2 14.3 127 280-412 1-128 (130)
17 smart00046 DAGKc Diacylglycero 99.8 1.2E-18 2.6E-23 165.1 9.3 102 282-394 1-105 (124)
18 KOG4435 Predicted lipid kinase 99.8 1.4E-18 3E-23 187.6 10.4 185 277-470 59-256 (535)
19 KOG1169 Diacylglycerol kinase 99.8 8.7E-18 1.9E-22 192.5 15.6 241 277-535 270-553 (634)
20 KOG0782 Predicted diacylglycer 99.6 4.2E-15 9E-20 165.4 12.5 239 274-534 361-635 (1004)
21 smart00045 DAGKa Diacylglycero 99.3 4E-12 8.7E-17 125.5 8.4 59 701-768 102-160 (160)
22 PRK03708 ppnK inorganic polyph 98.8 4.5E-08 9.8E-13 105.4 13.2 112 279-404 1-115 (277)
23 PRK02645 ppnK inorganic polyph 98.7 2.5E-07 5.4E-12 101.0 13.7 115 277-404 2-118 (305)
24 COG3199 Predicted inorganic po 98.2 5.7E-06 1.2E-10 90.4 10.2 74 319-401 84-157 (355)
25 PRK01231 ppnK inorganic polyph 98.1 3.6E-05 7.8E-10 83.9 14.0 114 278-403 4-120 (295)
26 PRK03378 ppnK inorganic polyph 98.0 2.7E-05 5.7E-10 84.8 9.5 111 277-403 4-121 (292)
27 PRK03372 ppnK inorganic polyph 97.7 0.00059 1.3E-08 74.8 13.6 114 277-404 4-131 (306)
28 KOG1170 Diacylglycerol kinase 97.6 1.8E-05 3.9E-10 93.0 1.4 123 279-412 195-324 (1099)
29 PRK02155 ppnK NAD(+)/NADH kina 97.5 0.00041 9E-09 75.5 10.3 113 278-404 5-122 (291)
30 PF01513 NAD_kinase: ATP-NAD k 97.5 0.00011 2.4E-09 79.4 5.1 113 280-405 1-136 (285)
31 PRK14077 pnk inorganic polypho 97.5 0.0015 3.3E-08 71.1 13.4 112 276-403 8-122 (287)
32 PF00609 DAGK_acc: Diacylglyce 97.4 0.00016 3.5E-09 71.9 4.5 103 422-536 2-120 (161)
33 PRK02649 ppnK inorganic polyph 97.3 0.0023 4.9E-08 70.3 12.7 112 278-403 1-126 (305)
34 PRK04539 ppnK inorganic polyph 97.2 0.0022 4.8E-08 70.1 11.3 113 277-403 4-126 (296)
35 PRK01911 ppnK inorganic polyph 97.2 0.0043 9.3E-08 67.8 13.3 111 279-403 1-122 (292)
36 PRK03501 ppnK inorganic polyph 97.1 0.0074 1.6E-07 65.1 13.5 96 279-403 3-99 (264)
37 PRK04885 ppnK inorganic polyph 96.9 0.01 2.2E-07 64.1 12.4 96 279-404 1-96 (265)
38 PRK14076 pnk inorganic polypho 96.8 0.011 2.3E-07 70.3 12.7 115 276-404 288-407 (569)
39 PLN02935 Bifunctional NADH kin 96.6 0.013 2.8E-07 68.0 11.2 115 277-403 193-320 (508)
40 PRK14075 pnk inorganic polypho 96.6 0.042 9E-07 59.0 14.1 97 279-404 1-97 (256)
41 PRK01185 ppnK inorganic polyph 96.1 0.059 1.3E-06 58.4 12.0 106 279-403 1-107 (271)
42 PRK00561 ppnK inorganic polyph 95.9 0.11 2.3E-06 56.1 13.0 100 279-412 1-101 (259)
43 PLN02929 NADH kinase 95.7 0.089 1.9E-06 57.8 11.6 92 300-409 37-145 (301)
44 PF00609 DAGK_acc: Diacylglyce 95.5 0.044 9.6E-07 54.6 7.8 86 673-768 64-161 (161)
45 PLN02727 NAD kinase 95.4 0.054 1.2E-06 66.6 9.4 113 276-403 676-801 (986)
46 PRK02231 ppnK inorganic polyph 94.9 0.24 5.1E-06 53.9 11.6 91 301-403 4-101 (272)
47 PRK04761 ppnK inorganic polyph 91.9 0.96 2.1E-05 48.5 9.8 35 337-378 26-60 (246)
48 COG0061 nadF NAD kinase [Coenz 90.2 2.9 6.3E-05 45.5 11.8 111 280-404 2-114 (281)
49 KOG4180 Predicted kinase [Gene 90.2 0.24 5.2E-06 54.5 3.4 94 298-406 76-171 (395)
50 PF13685 Fe-ADH_2: Iron-contai 87.6 1.7 3.6E-05 46.8 7.6 93 277-382 18-115 (250)
51 cd08186 Fe-ADH8 Iron-containin 87.5 2.8 6.1E-05 47.4 9.7 100 279-383 27-145 (383)
52 PF11711 Tim54: Inner membrane 86.4 2.3 5E-05 48.5 8.1 52 276-327 65-118 (382)
53 cd08194 Fe-ADH6 Iron-containin 85.7 4.2 9.1E-05 45.9 9.9 98 278-381 23-138 (375)
54 cd08197 DOIS 2-deoxy-scyllo-in 85.1 5.4 0.00012 45.0 10.3 86 279-375 24-118 (355)
55 PRK11914 diacylglycerol kinase 84.8 0.63 1.4E-05 50.7 2.6 33 494-536 202-235 (306)
56 TIGR03702 lip_kinase_YegS lipi 84.3 0.6 1.3E-05 50.7 2.2 32 494-535 189-221 (293)
57 cd08181 PPD-like 1,3-propanedi 84.2 5.3 0.00011 44.8 9.7 100 279-383 26-142 (357)
58 cd08176 LPO Lactadehyde:propan 84.1 5.4 0.00012 45.1 9.8 99 279-383 29-145 (377)
59 KOG1170 Diacylglycerol kinase 83.7 0.67 1.4E-05 56.1 2.4 99 421-534 614-727 (1099)
60 cd08187 BDH Butanol dehydrogen 83.3 5.7 0.00012 44.9 9.6 99 279-382 29-145 (382)
61 cd08185 Fe-ADH1 Iron-containin 83.2 4.2 9.1E-05 45.9 8.4 100 279-383 26-148 (380)
62 COG1454 EutG Alcohol dehydroge 82.4 12 0.00027 42.6 11.7 101 278-384 29-147 (377)
63 cd08174 G1PDH-like Glycerol-1- 82.3 7.8 0.00017 42.9 10.0 85 279-379 26-111 (331)
64 PRK10624 L-1,2-propanediol oxi 82.3 8.5 0.00018 43.6 10.5 99 279-383 31-149 (382)
65 cd08549 G1PDH_related Glycerol 82.2 6.4 0.00014 43.8 9.3 84 279-376 25-113 (332)
66 cd08170 GlyDH Glycerol dehydro 81.5 6.3 0.00014 43.9 8.9 91 279-382 23-118 (351)
67 cd08171 GlyDH-like2 Glycerol d 81.1 5.3 0.00011 44.6 8.2 84 279-375 23-110 (345)
68 KOG2178 Predicted sugar kinase 81.1 2.6 5.6E-05 47.9 5.6 112 277-402 92-225 (409)
69 cd08195 DHQS Dehydroquinate sy 80.6 9.5 0.00021 42.6 10.0 89 277-375 23-119 (345)
70 PRK13057 putative lipid kinase 80.2 1.1 2.4E-05 48.5 2.3 32 494-535 182-214 (287)
71 cd08173 Gro1PDH Sn-glycerol-1- 79.6 12 0.00026 41.6 10.4 86 279-378 26-113 (339)
72 TIGR01357 aroB 3-dehydroquinat 79.6 12 0.00026 41.7 10.3 88 278-375 20-115 (344)
73 PRK00002 aroB 3-dehydroquinate 78.7 13 0.00029 41.6 10.4 88 278-375 31-126 (358)
74 cd08182 HEPD Hydroxyethylphosp 78.7 14 0.00031 41.5 10.6 94 279-381 24-139 (367)
75 PRK00843 egsA NAD(P)-dependent 78.4 11 0.00024 42.2 9.6 84 279-376 35-120 (350)
76 cd08178 AAD_C C-terminal alcoh 78.2 8.9 0.00019 43.7 8.9 72 278-355 21-96 (398)
77 cd08199 EEVS 2-epi-5-epi-valio 77.7 13 0.00029 41.8 10.0 89 277-375 25-122 (354)
78 PRK13054 lipid kinase; Reviewe 77.7 1.5 3.3E-05 47.7 2.5 32 494-535 193-225 (300)
79 TIGR02638 lactal_redase lactal 77.1 15 0.00032 41.6 10.2 98 279-382 30-147 (379)
80 cd08550 GlyDH-like Glycerol_de 76.8 10 0.00023 42.3 8.8 87 279-378 23-114 (349)
81 cd08175 G1PDH Glycerol-1-phosp 76.6 16 0.00034 40.9 10.1 84 279-376 24-113 (348)
82 cd08190 HOT Hydroxyacid-oxoaci 76.4 13 0.00027 42.8 9.5 68 279-352 24-95 (414)
83 PRK06756 flavodoxin; Provision 76.1 12 0.00026 36.3 8.0 88 279-376 2-92 (148)
84 cd08188 Fe-ADH4 Iron-containin 75.7 18 0.00038 41.0 10.4 99 279-383 29-145 (377)
85 TIGR00147 lipid kinase, YegS/R 74.8 2.1 4.5E-05 46.3 2.6 32 494-535 192-224 (293)
86 cd08172 GlyDH-like1 Glycerol d 74.4 11 0.00024 42.1 8.2 91 279-382 24-117 (347)
87 PRK09860 putative alcohol dehy 74.0 20 0.00043 40.7 10.3 99 279-383 32-148 (383)
88 cd08191 HHD 6-hydroxyhexanoate 71.4 31 0.00066 39.2 11.0 98 279-382 23-138 (386)
89 PRK10586 putative oxidoreducta 70.7 28 0.00061 39.4 10.4 89 279-381 35-124 (362)
90 PLN02834 3-dehydroquinate synt 70.4 20 0.00043 41.7 9.3 88 278-375 100-197 (433)
91 cd08551 Fe-ADH iron-containing 70.4 20 0.00043 40.2 9.2 95 279-379 24-136 (370)
92 PRK13337 putative lipid kinase 70.0 2.9 6.4E-05 45.6 2.4 32 494-535 191-223 (304)
93 PRK09423 gldA glycerol dehydro 70.0 16 0.00034 41.2 8.2 84 279-375 30-116 (366)
94 cd07766 DHQ_Fe-ADH Dehydroquin 69.6 26 0.00056 38.6 9.7 89 278-378 23-117 (332)
95 cd08193 HVD 5-hydroxyvalerate 68.6 26 0.00057 39.5 9.6 96 279-380 27-140 (376)
96 cd08180 PDD 1,3-propanediol de 67.9 24 0.00052 39.1 9.0 94 279-381 23-125 (332)
97 PLN02948 phosphoribosylaminoim 67.4 1.1E+02 0.0023 37.1 14.8 137 193-378 359-499 (577)
98 cd08179 NADPH_BDH NADPH-depend 67.1 30 0.00065 39.1 9.7 99 279-382 24-143 (375)
99 PRK13059 putative lipid kinase 66.3 3.8 8.1E-05 44.7 2.2 31 494-535 190-221 (295)
100 cd01244 PH_RasGAP_CG9209 RAS_G 65.9 19 0.00042 33.3 6.5 59 162-238 26-96 (98)
101 cd08192 Fe-ADH7 Iron-containin 64.5 39 0.00085 38.0 10.0 72 279-356 25-100 (370)
102 PF00731 AIRC: AIR carboxylase 62.8 51 0.0011 33.1 9.2 78 290-378 8-89 (150)
103 PRK06703 flavodoxin; Provision 61.5 42 0.00091 32.6 8.4 83 279-376 2-91 (151)
104 PF00465 Fe-ADH: Iron-containi 61.3 18 0.00039 40.5 6.6 95 279-378 22-132 (366)
105 cd01536 PBP1_ABC_sugar_binding 61.0 49 0.0011 33.6 9.2 85 281-375 2-88 (267)
106 cd06295 PBP1_CelR Ligand bindi 60.9 77 0.0017 32.9 10.8 65 300-374 30-94 (275)
107 PLN02958 diacylglycerol kinase 60.5 5 0.00011 47.1 2.0 30 496-535 358-388 (481)
108 PRK11780 isoprenoid biosynthes 60.0 46 0.00099 35.1 8.8 39 279-319 2-42 (217)
109 PRK14021 bifunctional shikimat 58.9 45 0.00098 39.8 9.6 87 278-375 209-303 (542)
110 PF03575 Peptidase_S51: Peptid 58.2 13 0.00028 36.6 4.2 45 300-348 3-47 (154)
111 PF10254 Pacs-1: PACS-1 cytoso 56.9 38 0.00083 39.2 8.1 96 280-388 17-128 (414)
112 COG0371 GldA Glycerol dehydrog 55.9 40 0.00086 38.4 8.0 93 279-384 31-125 (360)
113 PRK13055 putative lipid kinase 55.7 7.3 0.00016 43.3 2.2 32 494-535 195-227 (334)
114 PRK15454 ethanol dehydrogenase 54.6 77 0.0017 36.3 10.2 100 279-383 50-166 (395)
115 cd06305 PBP1_methylthioribose_ 54.2 76 0.0017 32.7 9.4 66 300-373 19-86 (273)
116 cd01256 PH_dynamin Dynamin ple 53.8 27 0.00058 32.9 5.1 71 157-237 19-101 (110)
117 cd06310 PBP1_ABC_sugar_binding 53.7 71 0.0015 33.0 9.1 84 280-373 1-88 (273)
118 cd01391 Periplasmic_Binding_Pr 53.5 90 0.0019 30.9 9.5 58 300-358 20-80 (269)
119 PF07015 VirC1: VirC1 protein; 52.7 87 0.0019 33.6 9.5 99 279-384 1-101 (231)
120 cd06312 PBP1_ABC_sugar_binding 52.6 83 0.0018 32.7 9.4 66 300-373 20-88 (271)
121 KOG0782 Predicted diacylglycer 51.9 45 0.00097 39.8 7.6 89 678-779 591-687 (1004)
122 cd01264 PH_melted Melted pleck 51.3 37 0.00081 31.8 5.8 21 218-238 78-98 (101)
123 PRK06203 aroB 3-dehydroquinate 51.1 72 0.0016 36.6 9.2 91 278-375 42-145 (389)
124 PRK15138 aldehyde reductase; P 50.8 75 0.0016 36.2 9.3 98 279-383 30-148 (387)
125 cd08177 MAR Maleylacetate redu 49.8 37 0.00081 37.7 6.6 87 279-380 24-115 (337)
126 cd08183 Fe-ADH2 Iron-containin 49.7 41 0.00089 38.0 7.0 95 279-382 23-138 (374)
127 cd08198 DHQS-like2 Dehydroquin 49.6 83 0.0018 35.9 9.3 92 277-375 29-133 (369)
128 PRK09271 flavodoxin; Provision 48.5 29 0.00062 34.4 4.9 87 279-376 1-94 (160)
129 cd06282 PBP1_GntR_like_2 Ligan 47.4 1.3E+02 0.0028 30.7 9.7 66 300-373 19-85 (266)
130 PRK04155 chaperone protein Hch 46.2 1.3E+02 0.0028 33.3 9.8 41 278-319 49-99 (287)
131 cd06271 PBP1_AglR_RafR_like Li 45.7 1.3E+02 0.0028 30.8 9.4 66 300-373 23-88 (268)
132 PRK05282 (alpha)-aspartyl dipe 45.6 61 0.0013 34.7 7.1 62 277-348 30-91 (233)
133 cd01252 PH_cytohesin Cytohesin 45.4 89 0.0019 29.6 7.5 22 217-238 89-110 (125)
134 cd08169 DHQ-like Dehydroquinat 45.3 1.1E+02 0.0024 34.3 9.5 93 278-380 23-124 (344)
135 PRK06490 glutamine amidotransf 44.3 26 0.00057 37.3 4.1 64 274-350 3-66 (239)
136 cd06318 PBP1_ABC_sugar_binding 44.3 1.3E+02 0.0027 31.3 9.2 66 300-373 19-86 (282)
137 PRK11303 DNA-binding transcrip 43.8 1.6E+02 0.0035 31.6 10.1 87 277-373 60-147 (328)
138 PRK10014 DNA-binding transcrip 43.3 1.8E+02 0.004 31.3 10.6 88 276-373 62-150 (342)
139 cd06341 PBP1_ABC_ligand_bindin 42.9 1.8E+02 0.0038 31.5 10.4 77 278-359 132-211 (341)
140 cd01538 PBP1_ABC_xylose_bindin 42.4 1.3E+02 0.0029 31.7 9.2 69 300-376 19-89 (288)
141 cd01248 PH_PLC Phospholipase C 42.4 19 0.0004 33.8 2.4 60 164-237 30-112 (115)
142 cd06281 PBP1_LacI_like_5 Ligan 41.7 1.8E+02 0.004 30.0 9.9 70 300-377 19-89 (269)
143 cd06300 PBP1_ABC_sugar_binding 41.6 1.7E+02 0.0036 30.3 9.6 85 280-374 1-92 (272)
144 PRK14075 pnk inorganic polypho 41.6 17 0.00037 39.2 2.2 51 732-789 186-236 (256)
145 PRK11104 hemG protoporphyrinog 41.1 49 0.0011 33.5 5.4 86 279-377 1-88 (177)
146 cd06278 PBP1_LacI_like_2 Ligan 41.0 2E+02 0.0043 29.4 9.9 67 300-375 19-85 (266)
147 cd08184 Fe-ADH3 Iron-containin 40.8 1.9E+02 0.0042 32.6 10.5 82 301-383 40-141 (347)
148 smart00115 CASc Caspase, inter 40.8 1.2E+02 0.0026 32.3 8.4 58 275-332 4-65 (241)
149 cd06167 LabA_like LabA_like pr 40.7 1.2E+02 0.0026 29.0 7.8 58 301-359 56-122 (149)
150 TIGR02417 fruct_sucro_rep D-fr 40.6 2.2E+02 0.0047 30.6 10.6 88 276-373 58-146 (327)
151 PRK07308 flavodoxin; Validated 40.0 1.3E+02 0.0029 28.9 8.0 84 279-377 2-92 (146)
152 cd01257 PH_IRS Insulin recepto 39.8 65 0.0014 30.0 5.5 47 174-238 50-99 (101)
153 cd01537 PBP1_Repressors_Sugar_ 39.7 2E+02 0.0043 28.9 9.6 73 298-378 17-90 (264)
154 cd00764 Eukaryotic_PFK Phospho 39.4 1E+02 0.0022 38.6 8.6 60 323-384 466-525 (762)
155 cd01235 PH_SETbf Set binding f 38.2 30 0.00064 31.0 2.9 21 218-238 78-98 (101)
156 cd01545 PBP1_SalR Ligand-bindi 38.1 2.1E+02 0.0046 29.3 9.7 66 300-373 19-86 (270)
157 cd00763 Bacterial_PFK Phosphof 38.0 1E+02 0.0022 34.5 7.6 52 324-384 81-132 (317)
158 cd06315 PBP1_ABC_sugar_binding 37.5 2.2E+02 0.0047 30.0 9.8 66 300-373 20-87 (280)
159 TIGR03405 Phn_Fe-ADH phosphona 37.1 98 0.0021 34.8 7.4 98 279-383 24-144 (355)
160 cd08189 Fe-ADH5 Iron-containin 37.0 79 0.0017 35.7 6.7 98 279-382 27-143 (374)
161 PF03358 FMN_red: NADPH-depend 36.9 1.3E+02 0.0029 28.7 7.5 94 279-376 1-115 (152)
162 cd01540 PBP1_arabinose_binding 36.4 1.8E+02 0.0039 30.3 9.0 66 300-373 19-85 (289)
163 cd06297 PBP1_LacI_like_12 Liga 36.1 2.5E+02 0.0053 29.2 9.9 65 300-373 19-84 (269)
164 cd06304 PBP1_BmpA_like Peripla 35.7 2.3E+02 0.0051 29.4 9.6 46 300-346 21-66 (260)
165 cd06299 PBP1_LacI_like_13 Liga 35.5 2.8E+02 0.0061 28.4 10.1 65 300-373 19-84 (265)
166 cd06319 PBP1_ABC_sugar_binding 35.5 2.1E+02 0.0046 29.5 9.2 66 300-373 19-86 (277)
167 PRK10653 D-ribose transporter 35.3 2.3E+02 0.005 30.0 9.7 87 278-374 26-114 (295)
168 cd06277 PBP1_LacI_like_1 Ligan 35.1 3E+02 0.0066 28.3 10.3 64 300-373 22-86 (268)
169 cd06324 PBP1_ABC_sugar_binding 34.7 2.3E+02 0.005 30.3 9.6 67 300-374 20-89 (305)
170 cd01250 PH_centaurin Centaurin 34.4 39 0.00085 29.4 3.0 21 218-238 72-92 (94)
171 cd06320 PBP1_allose_binding Pe 34.3 1.8E+02 0.0038 30.2 8.4 83 281-373 2-88 (275)
172 COG1433 Uncharacterized conser 34.2 1.4E+02 0.003 29.0 6.8 73 276-359 34-107 (121)
173 PRK13869 plasmid-partitioning 34.0 1.4E+02 0.0031 34.3 8.2 48 278-327 120-167 (405)
174 smart00233 PH Pleckstrin homol 33.7 1.2E+02 0.0025 25.4 5.8 21 218-238 78-98 (102)
175 cd06321 PBP1_ABC_sugar_binding 33.6 2.1E+02 0.0045 29.6 8.8 67 300-374 19-89 (271)
176 cd06296 PBP1_CatR_like Ligand- 33.4 3.1E+02 0.0068 28.1 10.0 81 282-373 3-84 (270)
177 cd00032 CASc Caspase, interleu 33.2 1.8E+02 0.0039 30.9 8.3 72 276-347 6-85 (243)
178 cd07098 ALDH_F15-22 Aldehyde d 33.1 2.3E+02 0.0049 33.0 9.8 91 300-402 168-258 (465)
179 TIGR02483 PFK_mixed phosphofru 32.9 72 0.0016 35.8 5.4 52 324-384 83-134 (324)
180 PRK03202 6-phosphofructokinase 32.7 1.3E+02 0.0027 33.8 7.3 52 324-384 82-133 (320)
181 cd01251 PH_centaurin_alpha Cen 32.6 44 0.00095 30.8 3.1 22 217-238 76-97 (103)
182 PF04392 ABC_sub_bind: ABC tra 32.4 1.2E+02 0.0025 32.9 6.9 76 277-358 130-205 (294)
183 TIGR02482 PFKA_ATP 6-phosphofr 32.1 80 0.0017 35.1 5.6 52 325-384 81-132 (301)
184 PRK13805 bifunctional acetalde 32.0 2.3E+02 0.0051 35.8 10.3 95 279-378 481-605 (862)
185 cd06301 PBP1_rhizopine_binding 32.0 2.5E+02 0.0054 29.0 9.0 66 300-373 19-87 (272)
186 TIGR01162 purE phosphoribosyla 31.8 1.7E+02 0.0037 29.6 7.3 73 295-378 11-87 (156)
187 cd01246 PH_oxysterol_bp Oxyste 31.7 45 0.00098 28.8 3.0 21 218-238 69-89 (91)
188 cd06270 PBP1_GalS_like Ligand 31.5 3.7E+02 0.0081 27.6 10.3 66 300-374 19-85 (268)
189 cd06317 PBP1_ABC_sugar_binding 31.4 3.3E+02 0.007 28.0 9.8 66 300-373 20-87 (275)
190 cd03169 GATase1_PfpI_1 Type 1 31.2 65 0.0014 32.2 4.4 40 336-383 76-123 (180)
191 cd07062 Peptidase_S66_mccF_lik 31.0 1.3E+02 0.0028 33.3 7.0 67 282-350 3-81 (308)
192 PF01220 DHquinase_II: Dehydro 30.9 1.6E+02 0.0034 29.4 6.7 43 298-342 30-72 (140)
193 TIGR01754 flav_RNR ribonucleot 30.8 1.3E+02 0.0027 29.0 6.2 86 279-376 1-90 (140)
194 cd06273 PBP1_GntR_like_1 This 30.6 3.7E+02 0.0081 27.5 10.0 82 281-373 2-84 (268)
195 cd06294 PBP1_ycjW_transcriptio 30.5 3.8E+02 0.0082 27.4 10.1 66 300-373 24-89 (270)
196 cd06316 PBP1_ABC_sugar_binding 30.4 2.5E+02 0.0055 29.6 8.9 66 300-373 19-87 (294)
197 cd06313 PBP1_ABC_sugar_binding 30.3 1.9E+02 0.0041 30.3 7.9 66 300-373 19-86 (272)
198 cd01260 PH_CNK Connector enhan 30.2 49 0.0011 29.6 3.0 21 218-238 74-94 (96)
199 cd06306 PBP1_TorT-like TorT-li 30.1 2.7E+02 0.0058 29.0 9.0 66 300-373 19-87 (268)
200 TIGR00288 conserved hypothetic 29.9 2.7E+02 0.0059 28.3 8.4 57 302-360 71-129 (160)
201 cd00886 MogA_MoaB MogA_MoaB fa 29.6 2.1E+02 0.0046 28.1 7.6 57 300-357 23-87 (152)
202 cd06289 PBP1_MalI_like Ligand- 29.6 3E+02 0.0065 28.0 9.1 82 282-373 3-85 (268)
203 PTZ00286 6-phospho-1-fructokin 29.6 93 0.002 36.6 5.8 55 323-383 164-221 (459)
204 PRK05568 flavodoxin; Provision 29.6 1.6E+02 0.0036 27.9 6.7 68 279-357 2-77 (142)
205 cd06268 PBP1_ABC_transporter_L 29.5 4.7E+02 0.01 26.6 10.6 77 278-359 135-213 (298)
206 cd06267 PBP1_LacI_sugar_bindin 29.4 3.8E+02 0.0082 26.9 9.7 67 298-373 17-84 (264)
207 PRK14071 6-phosphofructokinase 29.2 1.5E+02 0.0031 33.9 7.1 52 325-384 97-148 (360)
208 cd01539 PBP1_GGBP Periplasmic 29.2 3.4E+02 0.0074 29.0 9.8 65 300-373 19-88 (303)
209 PLN02564 6-phosphofructokinase 29.1 1.3E+02 0.0027 35.8 6.8 59 323-384 164-222 (484)
210 PF01936 NYN: NYN domain; Int 29.1 1E+02 0.0022 29.0 5.2 58 301-359 51-118 (146)
211 KOG3857 Alcohol dehydrogenase, 28.9 1.3E+02 0.0028 34.3 6.4 69 277-354 69-144 (465)
212 PRK05670 anthranilate synthase 28.1 1E+02 0.0022 31.3 5.2 48 298-351 11-58 (189)
213 PRK06830 diphosphate--fructose 28.0 1.8E+02 0.0038 34.3 7.6 58 323-383 160-217 (443)
214 cd03147 GATase1_Ydr533c_like T 28.0 2.3E+02 0.0049 30.2 7.9 35 336-377 94-137 (231)
215 cd06298 PBP1_CcpA_like Ligand- 27.9 4.1E+02 0.0088 27.1 9.7 65 300-373 19-84 (268)
216 cd01218 PH_phafin2 Phafin2 Pl 27.8 1.7E+02 0.0036 27.6 6.1 59 162-238 23-95 (104)
217 cd06302 PBP1_LsrB_Quorum_Sensi 27.5 3.5E+02 0.0076 28.8 9.5 66 300-373 19-87 (298)
218 COG0014 ProA Gamma-glutamyl ph 27.0 1E+02 0.0022 35.7 5.3 95 299-409 159-256 (417)
219 PF00763 THF_DHG_CYH: Tetrahyd 27.0 2.2E+02 0.0048 27.0 6.9 61 278-342 29-93 (117)
220 cd03132 GATase1_catalase Type 26.9 1.5E+02 0.0033 28.2 5.9 66 279-349 2-75 (142)
221 cd07104 ALDH_BenzADH-like ALDH 26.8 2.8E+02 0.0061 31.7 9.0 91 301-402 144-234 (431)
222 cd06323 PBP1_ribose_binding Pe 26.8 3E+02 0.0065 28.1 8.5 66 300-373 19-86 (268)
223 cd00363 PFK Phosphofructokinas 26.6 1.2E+02 0.0026 34.2 5.9 56 325-383 82-137 (338)
224 cd01233 Unc104 Unc-104 pleckst 26.5 60 0.0013 29.7 2.9 21 218-238 75-95 (100)
225 PRK15395 methyl-galactoside AB 26.3 4.2E+02 0.0092 28.9 10.0 90 275-374 21-113 (330)
226 cd07086 ALDH_F7_AASADH-like NA 26.3 2.9E+02 0.0062 32.4 9.1 108 283-403 164-272 (478)
227 cd01542 PBP1_TreR_like Ligand- 26.1 4.9E+02 0.011 26.4 9.9 65 300-373 19-84 (259)
228 cd01265 PH_PARIS-1 PARIS-1 ple 25.9 64 0.0014 29.3 3.0 21 218-238 71-91 (95)
229 cd01239 PH_PKD Protein kinase 25.4 87 0.0019 30.3 3.8 29 160-188 19-55 (117)
230 cd07103 ALDH_F5_SSADH_GabD Mit 25.4 3.3E+02 0.0072 31.3 9.4 91 301-402 162-252 (451)
231 PRK14072 6-phosphofructokinase 25.2 1.9E+02 0.0042 33.5 7.3 58 324-384 92-149 (416)
232 cd00900 PH-like Pleckstrin hom 25.2 75 0.0016 26.6 3.2 22 217-238 76-97 (99)
233 PRK06555 pyrophosphate--fructo 25.0 2.1E+02 0.0046 33.2 7.5 57 325-384 102-158 (403)
234 cd07130 ALDH_F7_AASADH NAD+-de 24.9 2.9E+02 0.0064 32.3 8.9 106 282-402 162-270 (474)
235 COG1597 LCB5 Sphingosine kinas 24.8 46 0.001 36.7 2.1 33 495-537 194-227 (301)
236 TIGR00730 conserved hypothetic 24.7 1.1E+02 0.0023 31.5 4.6 46 322-376 19-66 (178)
237 COG3340 PepE Peptidase E [Amin 24.6 1.8E+02 0.004 31.0 6.3 68 278-352 32-99 (224)
238 TIGR00640 acid_CoA_mut_C methy 24.6 3.2E+02 0.007 26.5 7.7 71 282-358 5-75 (132)
239 cd00821 PH Pleckstrin homology 24.2 74 0.0016 26.3 2.9 21 218-238 74-94 (96)
240 PLN02335 anthranilate synthase 24.1 2.5E+02 0.0054 29.6 7.4 63 276-352 16-78 (222)
241 PRK10703 DNA-binding transcrip 24.1 5.7E+02 0.012 27.6 10.4 88 277-374 58-146 (341)
242 PRK07765 para-aminobenzoate sy 24.0 4.4E+02 0.0095 27.5 9.1 47 301-351 15-61 (214)
243 cd04509 PBP1_ABC_transporter_G 23.9 4.6E+02 0.0099 26.7 9.3 77 278-359 136-214 (299)
244 TIGR02634 xylF D-xylose ABC tr 23.9 4.1E+02 0.0088 28.5 9.2 65 300-373 18-85 (302)
245 KOG2059 Ras GTPase-activating 23.9 54 0.0012 40.1 2.6 65 160-242 589-665 (800)
246 TIGR02955 TMAO_TorT TMAO reduc 23.9 4E+02 0.0086 28.3 9.1 56 300-356 19-78 (295)
247 cd06311 PBP1_ABC_sugar_binding 23.6 4.1E+02 0.0089 27.5 8.9 69 300-376 19-94 (274)
248 PRK05637 anthranilate synthase 23.6 2.9E+02 0.0062 28.9 7.6 59 279-352 2-60 (208)
249 COG1609 PurR Transcriptional r 23.6 5E+02 0.011 28.8 10.0 66 276-344 56-122 (333)
250 PRK15122 magnesium-transportin 23.2 2.4E+02 0.0051 36.1 8.1 87 304-402 560-693 (903)
251 PF13407 Peripla_BP_4: Peripla 23.2 3.6E+02 0.0077 27.6 8.3 84 284-376 3-89 (257)
252 cd01743 GATase1_Anthranilate_S 23.0 2.2E+02 0.0048 28.6 6.5 46 300-351 12-57 (184)
253 cd03133 GATase1_ES1 Type 1 glu 22.7 1.4E+02 0.0031 31.5 5.2 45 336-384 82-141 (213)
254 PRK14987 gluconate operon tran 22.6 5.8E+02 0.013 27.4 10.1 86 277-373 62-148 (331)
255 cd06322 PBP1_ABC_sugar_binding 22.6 4.1E+02 0.0088 27.3 8.6 66 300-373 19-86 (267)
256 PF00169 PH: PH domain; Inter 22.4 86 0.0019 26.9 3.0 21 218-238 80-100 (104)
257 TIGR01481 ccpA catabolite cont 22.3 6.9E+02 0.015 26.7 10.6 67 277-346 58-125 (329)
258 PF00532 Peripla_BP_1: Peripla 22.3 3.9E+02 0.0085 28.7 8.7 86 280-376 3-88 (279)
259 PF13377 Peripla_BP_3: Peripla 22.1 3.5E+02 0.0076 25.5 7.5 97 278-381 9-109 (160)
260 PRK06774 para-aminobenzoate sy 22.0 1.5E+02 0.0033 30.0 5.2 47 300-352 13-59 (191)
261 cd06279 PBP1_LacI_like_3 Ligan 22.0 5.6E+02 0.012 26.8 9.7 63 300-374 24-86 (283)
262 PRK09267 flavodoxin FldA; Vali 22.0 2.6E+02 0.0055 27.6 6.6 85 279-376 2-89 (169)
263 cd01266 PH_Gab Gab (Grb2-assoc 21.9 77 0.0017 29.3 2.7 21 218-238 85-105 (108)
264 KOG1169 Diacylglycerol kinase 21.9 1.5E+02 0.0033 36.1 5.7 100 683-790 509-621 (634)
265 PF00365 PFK: Phosphofructokin 21.9 82 0.0018 34.6 3.3 50 327-384 84-133 (282)
266 cd08196 DHQS-like1 Dehydroquin 21.9 4.6E+02 0.01 29.6 9.3 82 279-375 20-110 (346)
267 cd06333 PBP1_ABC-type_HAAT_lik 21.7 9.7E+02 0.021 25.4 13.5 77 278-359 133-211 (312)
268 smart00852 MoCF_biosynth Proba 21.6 1.7E+02 0.0038 27.9 5.2 58 300-358 21-84 (135)
269 COG0205 PfkA 6-phosphofructoki 21.3 82 0.0018 35.8 3.3 96 278-384 32-135 (347)
270 PRK05569 flavodoxin; Provision 21.2 2.7E+02 0.0059 26.4 6.5 68 279-357 2-77 (141)
271 cd06292 PBP1_LacI_like_10 Liga 20.8 7.7E+02 0.017 25.3 10.3 66 300-373 19-89 (273)
272 TIGR03590 PseG pseudaminic aci 20.7 2.3E+02 0.005 30.6 6.5 27 337-375 242-268 (279)
273 TIGR02478 6PF1K_euk 6-phosphof 20.7 2.7E+02 0.0058 34.9 7.7 60 323-384 466-525 (745)
274 cd06284 PBP1_LacI_like_6 Ligan 20.7 3.6E+02 0.0079 27.4 7.7 65 281-348 2-67 (267)
275 PRK10355 xylF D-xylose transpo 20.5 6.3E+02 0.014 27.7 10.0 86 278-373 25-112 (330)
276 cd07115 ALDH_HMSADH_HapE Pseud 20.3 4.8E+02 0.01 30.2 9.3 106 282-402 147-252 (453)
277 cd06309 PBP1_YtfQ_like Peripla 20.1 3.7E+02 0.008 27.8 7.7 66 300-373 19-86 (273)
278 cd06325 PBP1_ABC_uncharacteriz 20.1 6.1E+02 0.013 26.1 9.3 77 277-359 130-206 (281)
279 cd03129 GAT1_Peptidase_E_like 20.0 2.7E+02 0.0058 28.7 6.5 45 300-347 47-91 (210)
No 1
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-72 Score=626.99 Aligned_cols=558 Identities=32% Similarity=0.504 Sum_probs=444.0
Q ss_pred ccccccccccccccccccCCCCCCccccccccceeeccCCCCCCCCCCCccccccccEEEeeeEeeccCCccccccCchh
Q 003790 66 VFPEKRSKKVKASSRTEQHHDGPQFDEVNKIDEHRIDIPGGAVGVGGGDEKSDLLGYVVYSGKLVLDKTKTAYDKSSSDA 145 (795)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (795)
||+++ .++ ++.+...+. ++...++|.+.||+|+++ .+++.+++|..+|.||+.++++...=.. ..
T Consensus 1 ~~~~~-~~~-~~~~~~~~~---~~~~~~p~s~~~~~~~~~-------~~~~~~~~~~~~~ag~~~~~~~~~~~~~---~s 65 (579)
T KOG1116|consen 1 VLGDG-TKK-SSTSTRDEE---DSLQVKPKSTIHPVDISA-------PAEKVDVLGKLLYAGKYVLEPRESEDGS---SS 65 (579)
T ss_pred CCccc-ccc-CCCCCcccc---ccCccCCccceeeecccC-------CCCccchhheeeccceEecccccccccc---cc
Confidence 57777 444 434444442 678889999999999963 4899999999999999999998766221 22
Q ss_pred hccchhhhhccccceeeeeecceeeecccccCCcceEEEEecCCcceEEEEEeecCCCCCccccccCCeeeEeEEEEecC
Q 003790 146 QQQSSSAQATNQDAVNAKLTSKALVWGSHVLPLDDIVSVSYNNGLRHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLAS 225 (795)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~d~~~~~~~~~~~~~~i~~y~~~k~~~g~~~~~~~~r~~~~~~f~~~ 225 (795)
++++...-.+...+++++++...+.|....++.-+.++++-+..+.+++||.|+.++. .+++|.++++++.+.
T Consensus 66 ~~~~~~~~~s~~k~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~~~ 138 (579)
T KOG1116|consen 66 IQSDAATSISLSKAKEARLESGLFPLKEVMLFKNNTVSVSVSDSVSLLPIYKLGPKRK-------LLRVRSTRPFRVDCT 138 (579)
T ss_pred cccchhhhcccccchhhhhccceeeeeecccccCceeEecCccchhheehhhcccccc-------ceeeeecccccceee
Confidence 3344444458889999999999999999999999999988666789999999887654 358888889988887
Q ss_pred CHHHHHHHHHhhhcccccccccCCCcccccccccccCCCCCCCcc-ccccCCCCCeEEEEEcCCCCCCCchhhHHHhHHH
Q 003790 226 TTEEAIQWVGGFADQQCFVNCLPHPLVSSKKQASAELYPTDTPPE-LIFRCKSPPKMLVILNPRSGRGRSSKVFHDIVEP 304 (795)
Q Consensus 226 ~~~~a~~W~~~~~~~~~~i~~l~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~r~krllVIvNP~SG~Gka~ki~~~~I~p 304 (795)
-.+..+.|+.++..+++...... +.. ...+.+ .+..++++++++||+||++|+|++.++|+.+++|
T Consensus 139 ~~~~~~~~v~~~~~~~~~~~~~~------------~~~-~~~~~~~~~~~~~r~~~lLV~iNP~gGkGka~~~F~~~v~P 205 (579)
T KOG1116|consen 139 PVEPFTLKVASFCRKQAAETSDR------------SFT-FEGLGDKSVDSLKRPRRLLVFINPFGGKGKAKKLFKNHVEP 205 (579)
T ss_pred eeehhhcccceeehhhhhccccc------------cce-ecccccccccccCCCccEEEEECCCCCCccHHHHHHhhhhh
Confidence 77777888777654443322211 000 011222 3567889999999999999999999999999999
Q ss_pred HHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeecCCcchhhhh
Q 003790 305 IFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (795)
Q Consensus 305 lL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArs 384 (795)
+|.++++.++++.|++++||+|+++++++. .||+|||+||||++|||+|||+.|+||+.+.++|||||||||||+||++
T Consensus 206 ll~~A~i~~evv~T~~~~HArei~rt~dl~-kyDgIv~vsGDGl~hEVlNGLl~R~D~~~~~klPigiiP~GSGNala~S 284 (579)
T KOG1116|consen 206 LLSEAGISFEVVLTTRPNHAREIVRTLDLG-KYDGIVCVSGDGLLHEVLNGLLERPDWEAAVKLPIGIIPCGSGNALAKS 284 (579)
T ss_pred hhhhcCceEEEEEecCccHHHHHHHhhhcc-ccceEEEecCCcCHHHhhhccccccchhhHhcCceeEeecCCccHHHHH
Confidence 999999999999999999999999999876 4899999999999999999999999999999999999999999999999
Q ss_pred hcCCC--C-HHHHHHHHHhCceeEEeEEEEEEeecceeEEEEEEEEEeeeccchhhhHHHHhhcCcHHHHHHHHHHHhcC
Q 003790 385 VLGVR--D-PVSAALAIVKGGLTATDVFAVEWIQTGVIHFGMTVSYYGFVSDVLELSEKYQKRFGPLRYFVAGFLKFLCL 461 (795)
Q Consensus 385 llGi~--d-p~~Aa~~IlkG~~~~IDlg~V~~~~~g~~~ffln~~g~GfdAdV~~~sek~Rr~lG~lrY~laal~~L~~~ 461 (795)
+++.. + +..|+..|++|..+++|+..+++. .+.++|++++++|||.|||++.+|+|| |||++||++++|.+|+.+
T Consensus 285 v~~~~~~~~~~~a~l~iirg~~t~~dv~~v~~~-~~~~~fSfLs~~wGlIADiDI~SEk~R-~mG~~Rf~lg~~~rl~~l 362 (579)
T KOG1116|consen 285 VLWTNGPDLPLLATLLIIRGRLTPMDVSVVEYA-GKDRHFSFLSAAWGLIADVDIESEKYR-WMGPARFTLGAFLRLIQL 362 (579)
T ss_pred hhcccCcccchHHHHHHHccCCCchheeehhhc-cCcceEEEEeeeeeeEEecccchHHHH-hhcchhhhHHHHHHHHhc
Confidence 88776 4 888999999999999999999873 344589999999999999999999999 999999999999999999
Q ss_pred CceEEEEEEecCCccccccccccccceeecCceeeeeeccCCCCCCcccCCCCCcCCCCCCCCCCCCCCCcccCCCCCCC
Q 003790 462 PKYSYEVEYLPASKEDLEGKQSAEREVVDMSDLYTDIMRKSKNEGMPRASSLSSIDSIMTPSRMSGGDPDTTCSSTHAST 541 (795)
Q Consensus 462 r~y~~~I~~~p~~~~~~~g~~~~~~ek~e~~~~~v~V~Nr~~GgG~~iaP~A~~~d~~~t~~~~~DG~Ldvv~~~~~~~~ 541 (795)
+.|+++|+|+|+......+.+ .++ .+.+++ ..|.+.++.+
T Consensus 363 r~Y~gri~ylp~~~k~~~~~~----------~~~--------------~~~~~~----------------~~~~~~~a~~ 402 (579)
T KOG1116|consen 363 RKYKGRIEYLPAKGKSAEPLP----------AHE--------------LEAADS----------------EGCLSTHADT 402 (579)
T ss_pred cCCCceEEEecccccccCccc----------chh--------------hccccc----------------cccccccccc
Confidence 999999999987654322210 000 011110 2467788888
Q ss_pred CCcccccCCCcccccccCCCCCCCCCCcccCCCCCCCCCCCCCCCcccccccccccccccCCCCCcCCCCCcCCCccccc
Q 003790 542 EPSEYVRGLDPKSKRLSSGRSNVMAEPEVIHPQLPLSTTPNWPRTRSKSRTDKWTGLTVAHDPSRCSWGNTATNDKEDIS 621 (795)
Q Consensus 542 ~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~s~~r~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 621 (795)
+++.|.|.-.+++.+.+..+++...++.++ +
T Consensus 403 ~~s~~~~~~~~~~~~~~~~~s~~~e~s~~~-~------------------------------------------------ 433 (579)
T KOG1116|consen 403 EPSEYPRLSVPKMSPKSVLRSPVSETSPVI-P------------------------------------------------ 433 (579)
T ss_pred cccccccccccccCccccccCcccccCccc-C------------------------------------------------
Confidence 999888876655444443333222221100 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCcccCCCCCCCCCcEEEec-cEEEEEEecccccccCCCCcc
Q 003790 622 STLSDPGPIWDAEPKWDTEPNWDVENPIELPGPSDDVEAGTKKEGIPRYEENWIVKKG-QYLGIMICNHACRTVQSAQVV 700 (795)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgp~~~l~~~~~~~~lp~~~~~W~~ieG-~Fv~v~v~N~~~~~~~~d~~l 700 (795)
. ++..+ ++..++++| .+|++++| +|+++.+.-+++ +++|..+
T Consensus 434 --------------------~-----------~~~~~-~p~~~~p~p---sdw~~~~~~d~~~~~a~~~sy--~~~d~~~ 476 (579)
T KOG1116|consen 434 --------------------E-----------DPLHL-SPPLEEPLP---SDWEVVPGVDFVCILAILLSY--LGADMKF 476 (579)
T ss_pred --------------------C-----------ccccC-CCcccCCCC---cceeeecCcceeeeehhhhhh--ccCCccc
Confidence 0 00000 011112444 56999999 999998886664 7999999
Q ss_pred CcCCCCCCCeEEEEEEc-CcChHHHHHHHHHhccCCCC--CCCceEEEEEEEEEEEecCCCCCceeecCceeecCeeEEE
Q 003790 701 APRAEYDDNTMDMLLVH-GSGRLRLARFFLLLQMGRHL--SLPYVEYVKVKSVKIKAGKHTHNSCGIDGELFPLNGQVIS 777 (795)
Q Consensus 701 AP~A~l~DG~LDLvlV~-~~sR~~Ll~~l~~~~~G~hl--~~P~V~~ikvka~rIep~~~~~~~i~VDGE~ip~~~~V~~ 777 (795)
||.|.++||+|||++++ +.+|.+|+++|++|..|+|+ ..|+|.|++|++|+|+|.. ..+++.+|||.+++.. +.+
T Consensus 477 ~P~A~~~dg~I~lv~~~~~~~r~~ll~~llald~gsh~~~~~p~v~~~~vra~r~epv~-~~~~~~vDGE~~~~ep-~q~ 554 (579)
T KOG1116|consen 477 APAARPDDGLIHLVIVRAGGSRTQLLRLLLALDKGSHLHVECPFVKYVKVRAFRLEPVT-PSGYFAVDGELVPLEP-LQV 554 (579)
T ss_pred ccccccCCCeEEEEEEccCCcHHHHHHHHHhhcccccccccCCceeEEEeEEEEEEEec-CCceEEecccEeeccc-eeE
Confidence 99999999999999995 66999999999999999997 7899999999999999984 4488999999999775 889
Q ss_pred eeeccccccccc
Q 003790 778 SLLPEQCRLIGR 789 (795)
Q Consensus 778 ~vlP~~~rlig~ 789 (795)
+++|++|.++-+
T Consensus 555 ~v~p~~i~~~s~ 566 (579)
T KOG1116|consen 555 QVLPGLILTLSG 566 (579)
T ss_pred EecccceeEEec
Confidence 999999999876
No 2
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=100.00 E-value=5.1e-62 Score=553.54 Aligned_cols=427 Identities=28% Similarity=0.504 Sum_probs=340.2
Q ss_pred eee-ecceeeec---ccccCCc-ceEEEEecCCcceEEEEEeecCCCCCccccccCC-eeeEeEEEEecCCHHHHHHHHH
Q 003790 162 AKL-TSKALVWG---SHVLPLD-DIVSVSYNNGLRHFTVHSYPLKKGSYGLSCFIKP-RRVRKDYRFLASTTEEAIQWVG 235 (795)
Q Consensus 162 ~~~-~~~~~~~~---~~~l~l~-d~~~~~~~~~~~~~~i~~y~~~k~~~g~~~~~~~-~r~~~~~~f~~~~~~~a~~W~~ 235 (795)
+-| +.-.|-|. .+.|.|+ ||.||.... ..+.|.++..+ ++|.+|+++. +|++|+|+|.+.+.++|++|++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 99 (481)
T PLN02958 24 LTLTAEGKLRWTDSGQRCLTVEKEVLGFVIEG--SKIRVKTIVEK--GGGICCRGSAGALARKDFVFEPLSDESRRLWCQ 99 (481)
T ss_pred EEeccCCEEEeecCCcceEEEeeeeeEEEEeC--CEEEEEEEEec--CCcccccCCCCCceeeeEEEeCCCHHHHHHHHH
Confidence 444 33456786 4567764 788876433 34677777744 3688999998 8899999999999999999999
Q ss_pred hhhcccccccccCCCcccccccccccCCCCCCCccccccCCCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEE
Q 003790 236 GFADQQCFVNCLPHPLVSSKKQASAELYPTDTPPELIFRCKSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEV 315 (795)
Q Consensus 236 ~~~~~~~~i~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v 315 (795)
.|++ + ++. ..+|+|++||+||.||++++.++|.+.++++|+++++++++
T Consensus 100 ~~~~--~-~~~----------------------------~~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v 148 (481)
T PLN02958 100 KLRD--Y-LDS----------------------------LGRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTI 148 (481)
T ss_pred HHHH--H-Hhh----------------------------ccCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEE
Confidence 9964 1 111 13789999999999999999998877899999999999999
Q ss_pred EEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeecCCcchhhhhhc---CC-CCH
Q 003790 316 VKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWTVL---GV-RDP 391 (795)
Q Consensus 316 ~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArsll---Gi-~dp 391 (795)
+.|++++||.+++++++..+ +|.|||+|||||||||+|||+.+++|..+.++||||||+||||+|||+++ |+ .++
T Consensus 149 ~~T~~~ghA~~la~~~~~~~-~D~VV~vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfArsL~~~~gip~~~ 227 (481)
T PLN02958 149 QETKYQLHAKEVVRTMDLSK-YDGIVCVSGDGILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAKSLLDSVGEPCSA 227 (481)
T ss_pred EeccCccHHHHHHHHhhhcC-CCEEEEEcCCCHHHHHHHHHhhCccccccccCceEEecCcCcchhhhhhccccCCCcCH
Confidence 99999999999999987654 79999999999999999999999887777789999999999999999963 54 588
Q ss_pred HHHHHHHHhCceeEEeEEEEEEeecceeEEEEEEEEEeeeccchhhhHHHHhhcCcHHHHHHHHHHHhcCCceEEEEEEe
Q 003790 392 VSAALAIVKGGLTATDVFAVEWIQTGVIHFGMTVSYYGFVSDVLELSEKYQKRFGPLRYFVAGFLKFLCLPKYSYEVEYL 471 (795)
Q Consensus 392 ~~Aa~~IlkG~~~~IDlg~V~~~~~g~~~ffln~~g~GfdAdV~~~sek~Rr~lG~lrY~laal~~L~~~r~y~~~I~~~ 471 (795)
.+|+..|++|..+++|++.|+. ++..+|++++++|||+|+|+..++++| |||++||.++++++|++++.|+++|+|+
T Consensus 228 ~~A~~~I~~g~~~~vDlg~v~~--~~~~~f~vn~~g~GfdAdV~~~se~kr-~lG~lrY~~~~l~~l~~~r~y~~~I~~~ 304 (481)
T PLN02958 228 TNAVLAIIRGHKCSLDVATILQ--GETKFFSVLMLAWGLVADIDIESEKYR-WMGSARLDFYGLQRILCLRQYNGRISFV 304 (481)
T ss_pred HHHHHHHHcCCceEEeEEEEEc--CCceEEEEEeeeeehhhhhhccccccc-ccchHHHHHHHHHHHHhcCCcceEEEEE
Confidence 8999999999999999999973 233455689999999999987777776 7999999999999999999999999998
Q ss_pred cCCccccccccccccceeecCceeeeeeccCCCCCCcccCCCCCcCCCCCCCCCCCCCCCcccCCCCCCCCCcccccCCC
Q 003790 472 PASKEDLEGKQSAEREVVDMSDLYTDIMRKSKNEGMPRASSLSSIDSIMTPSRMSGGDPDTTCSSTHASTEPSEYVRGLD 551 (795)
Q Consensus 472 p~~~~~~~g~~~~~~ek~e~~~~~v~V~Nr~~GgG~~iaP~A~~~d~~~t~~~~~DG~Ldvv~~~~~~~~~~~~~~~~l~ 551 (795)
|+......+. +. ..++..|
T Consensus 305 ~a~~~~~~~~----------------------------------------~~-~~~~~~~-------------------- 323 (481)
T PLN02958 305 PAPGFEAYGE----------------------------------------PT-SYNGEST-------------------- 323 (481)
T ss_pred eccccccccc----------------------------------------cc-ccccccc--------------------
Confidence 7543220000 00 0011000
Q ss_pred cccccccCCCCCCCCCCcccCCCCCCCCCCCCCCCcccccccccccccccCCCCCcCCCCCcCCCcccccCCCCCCCCCC
Q 003790 552 PKSKRLSSGRSNVMAEPEVIHPQLPLSTTPNWPRTRSKSRTDKWTGLTVAHDPSRCSWGNTATNDKEDISSTLSDPGPIW 631 (795)
Q Consensus 552 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~s~~r~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 631 (795)
.+ +.+ + .. +
T Consensus 324 ~~-------------~~~-------------~----~~--------------~--------------------------- 332 (481)
T PLN02958 324 SK-------------EES-------------G----KD--------------K--------------------------- 332 (481)
T ss_pred cc-------------ccc-------------c----cc--------------c---------------------------
Confidence 00 000 0 00 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcccCcccCCCCCCCCCcEEEeccEEEEEEecccccccCCCCccCcCCCCCCCeE
Q 003790 632 DAEPKWDTEPNWDVENPIELPGPSDDVEAGTKKEGIPRYEENWIVKKGQYLGIMICNHACRTVQSAQVVAPRAEYDDNTM 711 (795)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~pgp~~~l~~~~~~~~lp~~~~~W~~ieG~Fv~v~v~N~~~~~~~~d~~lAP~A~l~DG~L 711 (795)
.-.+.+|...+ ...+|+++++.|++|+++|++++ |.++.+||.|+++||+|
T Consensus 333 ----------------~~~~~~~~~~~-----------~~~~w~~~~~~fl~v~v~N~~~~--Ggg~~iaP~A~l~DG~L 383 (481)
T PLN02958 333 ----------------QHGYQGPDVKL-----------ENLDWRTIKGPFVSVWLHNVPWG--GEDTLAAPDAKFSDGYL 383 (481)
T ss_pred ----------------cccccCCcccc-----------CCccceEeecceeEEeeccCccc--CCCcccCCcccCCCCeE
Confidence 00001111110 12479999999999999999984 89999999999999999
Q ss_pred EEEEEcCcChHHHHHHHHHhccCCCCCCCceEEEEEEEEEEEecC-----CCCCceeecCceeecCeeEEEeeecccccc
Q 003790 712 DMLLVHGSGRLRLARFFLLLQMGRHLSLPYVEYVKVKSVKIKAGK-----HTHNSCGIDGELFPLNGQVISSLLPEQCRL 786 (795)
Q Consensus 712 DLvlV~~~sR~~Ll~~l~~~~~G~hl~~P~V~~ikvka~rIep~~-----~~~~~i~VDGE~ip~~~~V~~~vlP~~~rl 786 (795)
||++|+++++++++++|..+.+|+|+..|+|+|+++++|+|++.. ..+.++++|||++. .++++++++|+++++
T Consensus 384 Dlviv~~~s~~~lL~~l~~~~~G~h~~~~~V~~~k~k~~~I~~~~~~~~~~~~~~i~iDGE~~~-~~p~~i~v~~~al~~ 462 (481)
T PLN02958 384 DLILIKDCPKLALLALMTKLSDGTHVKSPYVMYLKVKAFVLEPGPRTDDPTKGGIIDSDGEVLA-RGNGSYKCDQKALMS 462 (481)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCccCCCceEEEEEEEEEEEECCcccCcCcCCeEEECCcccC-CCCceeeeccccccc
Confidence 999999999999999999999999999999999999999999842 13457899999985 447899999999999
Q ss_pred ccc
Q 003790 787 IGR 789 (795)
Q Consensus 787 ig~ 789 (795)
||.
T Consensus 463 ~~~ 465 (481)
T PLN02958 463 YDK 465 (481)
T ss_pred cCc
Confidence 983
No 3
>PLN02204 diacylglycerol kinase
Probab=100.00 E-value=7.7e-56 Score=504.41 Aligned_cols=453 Identities=26% Similarity=0.426 Sum_probs=340.4
Q ss_pred hhhhccccceeeeeecceeeecccccCCcceE-E-EEecCCcceEEEEEeecCCCCCccccccCCeeeEeEEEEecCCHH
Q 003790 151 SAQATNQDAVNAKLTSKALVWGSHVLPLDDIV-S-VSYNNGLRHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTTE 228 (795)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~d~~-~-~~~~~~~~~~~i~~y~~~k~~~g~~~~~~~~r~~~~~~f~~~~~~ 228 (795)
..+....+.+.|+++.+.|+-+...-.-.+++ + .+.+.....|+||.+.+.+... -.++...|+|.+++..
T Consensus 67 ~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~-------~~w~~~~~~f~~~d~~ 139 (601)
T PLN02204 67 ETEIKFSDVYAVEFINYGLIHSPKLSHAKGCFRERLSETQEMYRFTVHGFQRSRKEP-------CLWVLAVYTFGHKDLQ 139 (601)
T ss_pred ccceeeeeeeEEeeccccceecccccccchhhhccccccccceeeEEEEeeecccCC-------CcceeEEEeecCCCHH
Confidence 34457889999999999999876643333333 2 2234456779999998766432 2568999999999999
Q ss_pred HHHHHHHhhhcccccccccCCCcccccccccccCCCCCCCccccccCCCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHH
Q 003790 229 EAIQWVGGFADQQCFVNCLPHPLVSSKKQASAELYPTDTPPELIFRCKSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKL 308 (795)
Q Consensus 229 ~a~~W~~~~~~~~~~i~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~ 308 (795)
.|++|++.|.. ++ +....|+|+++|||||.||+|++.+.|+ .++++|++
T Consensus 140 ~~~~w~~~l~~--~l----------------------------~~~~~r~k~llVivNP~sGkg~~~~~~~-~V~p~f~~ 188 (601)
T PLN02204 140 TCQSWVDRLNA--SL----------------------------NKEVGRPKNLLVFVHPLSGKGSGSRTWE-TVSPIFIR 188 (601)
T ss_pred HHHHHHHHHHH--HH----------------------------hhccCCCceEEEEECCCCCCcchHHHHH-HHHHHHHH
Confidence 99999999843 11 0122489999999999999999999995 79999999
Q ss_pred cCCeEEEEEeCCcchHHHHHHHhh---hcCCCCCeEEEcCchHHHHHHHHHHcCC-------------------------
Q 003790 309 AGFKLEVVKTTSAGHAKNLASTVD---ISSCPDGIICVGGDGIINEVLNGLLSRG------------------------- 360 (795)
Q Consensus 309 aGi~~~v~~T~~~ghA~ela~~l~---~~~~~D~IVvvGGDGTlnEVvNGL~~r~------------------------- 360 (795)
++++++++.|++++||.++++++. + ..+|+|||||||||+|||+|||+.+.
T Consensus 189 a~i~~~v~~T~~aghA~d~~~~~~~~~l-~~~D~VVaVGGDGt~nEVlNGL~~~r~~~~~p~~~~~~~~~~~~~~~~~~~ 267 (601)
T PLN02204 189 AKVKTKVIVTERAGHAFDVMASISNKEL-KSYDGVIAVGGDGFFNEILNGYLLSRLKVPYPPSPSDSVHSVQSRGSSSVH 267 (601)
T ss_pred cCCeEEEEEecCcchHHHHHHHHhhhhc-cCCCEEEEEcCccHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence 999999999999999999987653 3 34899999999999999999998421
Q ss_pred ------------Ccc------------------------------cCCCccEEEeecCCcchhhhhhcCCCCHHHHHHHH
Q 003790 361 ------------NQK------------------------------EGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAI 398 (795)
Q Consensus 361 ------------d~~------------------------------~a~~iPLGIIP~GTGNdfArsllGi~dp~~Aa~~I 398 (795)
|++ ....++|||||+||||+||+++.|..||..++..|
T Consensus 268 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lGIIPaGSgN~~a~~~~g~~dp~taa~~I 347 (601)
T PLN02204 268 EPNETVHECDNEDHSPLLSDSVQEVMNFRTENGSCEGDQDSDFPFPNERFRFGIIPAGSTDAIVMCTTGERDPVTSALHI 347 (601)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccCCCceEEEECCccHHHHHHHccCCCCHHHHHHHH
Confidence 000 01358999999999999999888889999999999
Q ss_pred HhCceeEEeEEEEEEee-------cceeEEEEEEEEEeeeccchhhhHHHHhhcCcHHHHHHHHHHHhcCCceEEEEEEe
Q 003790 399 VKGGLTATDVFAVEWIQ-------TGVIHFGMTVSYYGFVSDVLELSEKYQKRFGPLRYFVAGFLKFLCLPKYSYEVEYL 471 (795)
Q Consensus 399 lkG~~~~IDlg~V~~~~-------~g~~~ffln~~g~GfdAdV~~~sek~Rr~lG~lrY~laal~~L~~~r~y~~~I~~~ 471 (795)
+.|..+++|+++|+... ....+||++++|+||+++|+..++++| |||++||.+++++.|++++.|+++|.++
T Consensus 348 i~G~~~~lDig~V~~~~~~~~~~~~~~~ryf~s~ag~Gf~gdVi~esek~R-~mG~~rY~~~g~k~~~~~r~y~~~V~~d 426 (601)
T PLN02204 348 ILGRRVCLDIAQVVRWKTTSTSEIEPYVRYAASFAGYGFYGDVISESEKYR-WMGPKRYDYAGTKVFLKHRSYEAEVAYL 426 (601)
T ss_pred HhCCCeEeeEEEEecccccccccccccceEEEEEeecchHHHHHHHhhhhc-ccchHHHHHHHHHHHHhCCCceEEEEEC
Confidence 99999999999996311 112368899999999999999998887 8999999999999999999999999997
Q ss_pred cCCccccccccccccceeecCceeeeeeccCCCCCCcccCCCCCcCCCCCCCCCCCCCCCcccCCCCCCCCCcccccCCC
Q 003790 472 PASKEDLEGKQSAEREVVDMSDLYTDIMRKSKNEGMPRASSLSSIDSIMTPSRMSGGDPDTTCSSTHASTEPSEYVRGLD 551 (795)
Q Consensus 472 p~~~~~~~g~~~~~~ek~e~~~~~v~V~Nr~~GgG~~iaP~A~~~d~~~t~~~~~DG~Ldvv~~~~~~~~~~~~~~~~l~ 551 (795)
+..... +. .. .+ .|.... ..+ .+.. +|..
T Consensus 427 ~~~~~~--~~------------~~---~~---------~~~~~~----~~~---~~~~---~c~~--------------- 455 (601)
T PLN02204 427 ETESEK--SK------------AS---SE---------ARKRTG----PKK---SEKI---VCRT--------------- 455 (601)
T ss_pred CeEeee--cc------------cc---cc---------cccccc----ccc---ccch---hhhh---------------
Confidence 532110 00 00 00 000000 000 0000 0100
Q ss_pred cccccccCCCCCCCCCCcccCCCCCCCCCCCCCCCcccccccccccccccCCCCCcCCCCCcCCCcccccCCCCCCCCCC
Q 003790 552 PKSKRLSSGRSNVMAEPEVIHPQLPLSTTPNWPRTRSKSRTDKWTGLTVAHDPSRCSWGNTATNDKEDISSTLSDPGPIW 631 (795)
Q Consensus 552 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~s~~r~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 631 (795)
.|...+....++ . +
T Consensus 456 ------------------------------------------------------~c~Vcn~~~~~~-~---------~-- 469 (601)
T PLN02204 456 ------------------------------------------------------NCSVCNTKVSTN-S---------P-- 469 (601)
T ss_pred ------------------------------------------------------heeeeccccccc-c---------c--
Confidence 000000000000 0 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcccCcccCCCCCCCCCcEEEeccEEEEEEecccccccCCCCccCcCCCCCCCeE
Q 003790 632 DAEPKWDTEPNWDVENPIELPGPSDDVEAGTKKEGIPRYEENWIVKKGQYLGIMICNHACRTVQSAQVVAPRAEYDDNTM 711 (795)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~pgp~~~l~~~~~~~~lp~~~~~W~~ieG~Fv~v~v~N~~~~~~~~d~~lAP~A~l~DG~L 711 (795)
...|- . .+ .+..|+++.|.|+++.+++++|.|-.+.-.++|.|+++||+|
T Consensus 470 -----------------~~~p~--~----------~~-~~~~W~~~~G~f~~vG~~iis~~~~rap~gl~pdA~l~DG~L 519 (601)
T PLN02204 470 -----------------STTPN--S----------CP-EETRWLRSKGRFLSVGAAIISNRNERAPDGLVADAHLSDGFL 519 (601)
T ss_pred -----------------ccccc--c----------cc-ccccceeecCceEEeeeecccccccccccccCCCCcCCCCeE
Confidence 00000 0 00 136899999999999999888876555568999999999999
Q ss_pred EEEEEcCcChHHHHHHHHHhc-c-CCCCCCCceEEEEEEEEEEEecCCCCCceeecCceeecCeeEEEeeeccccccccc
Q 003790 712 DMLLVHGSGRLRLARFFLLLQ-M-GRHLSLPYVEYVKVKSVKIKAGKHTHNSCGIDGELFPLNGQVISSLLPEQCRLIGR 789 (795)
Q Consensus 712 DLvlV~~~sR~~Ll~~l~~~~-~-G~hl~~P~V~~ikvka~rIep~~~~~~~i~VDGE~ip~~~~V~~~vlP~~~rlig~ 789 (795)
||++|++++++.+|++|..+. + |+|+++|||+|+|+++|+|++.. ....|++|||+++ ..+++++++|++++|+.|
T Consensus 520 DLilVr~~s~~~~L~~L~~l~~~gG~~l~~~~Ve~~ktk~f~~~s~~-~~~~~niDGE~~~-~~~v~v~V~~~al~lfa~ 597 (601)
T PLN02204 520 HLILIKDCPHPLYLWHLTQLAKRGGEPLNFEFVEHHKTPAFTFTSFG-DESVWNLDGEIFQ-AHQLSAQVFRGLVNLFAS 597 (601)
T ss_pred EEEEECCCCHHHHHHHHHHHHhhcCccCCCCcEEEEEeeEEEEEECC-CCceEEeCCCcCC-CccEEEEEEcCeeEEEec
Confidence 999999999999999998885 4 69999999999999999999852 3466999999996 458999999999999987
Q ss_pred ccC
Q 003790 790 SHD 792 (795)
Q Consensus 790 ~~~ 792 (795)
-++
T Consensus 598 g~e 600 (601)
T PLN02204 598 GPE 600 (601)
T ss_pred CCC
Confidence 654
No 4
>KOG1115 consensus Ceramide kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-50 Score=431.28 Aligned_cols=383 Identities=30% Similarity=0.491 Sum_probs=321.6
Q ss_pred ceEEEEEeecCCCCCccccccCCeeeEeEEEEecCCHHHHHHHHHhhhcccccccccCCCcccccccccccCCCCCCCcc
Q 003790 191 RHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTTEEAIQWVGGFADQQCFVNCLPHPLVSSKKQASAELYPTDTPPE 270 (795)
Q Consensus 191 ~~~~i~~y~~~k~~~g~~~~~~~~r~~~~~~f~~~~~~~a~~W~~~~~~~~~~i~~l~~p~~~~~~~~~~~~~~~~~~~~ 270 (795)
..||+|.+..+. |.++..+.++|.+.+.++|+.|.+.|+. .++.
T Consensus 110 y~ftvh~v~~~~---------k~~W~laq~tf~~~~~q~c~~W~~~l~~--~L~k------------------------- 153 (516)
T KOG1115|consen 110 YRFTVHGVQSSP---------KELWNLAQFTFGHMDLQTCQSWMDQLNY--SLIK------------------------- 153 (516)
T ss_pred eEEEEEEEEcCc---------hhhcchhcceEecccHHHHHHHHHHHHH--HHHH-------------------------
Confidence 449999887554 4567889999999999999999998842 1111
Q ss_pred ccccCCCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhc--CCCCCeEEEcCchH
Q 003790 271 LIFRCKSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDIS--SCPDGIICVGGDGI 348 (795)
Q Consensus 271 ~~~~~~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~--~~~D~IVvvGGDGT 348 (795)
...|||.++|||||++|+|++.++|+. |.++|-.+.+.++++.|++++||++.+.++..+ ..||+||+|||||.
T Consensus 154 ---~~~RPknllvFinPfgGkG~g~ki~e~-V~~~F~la~v~tkvivTErAnhA~d~~~ei~~~~~~~yDGiv~VGGDG~ 229 (516)
T KOG1115|consen 154 ---EVERPKNLLVFINPFGGKGNGSKIWET-VSKIFILAKVNTKVIVTERANHAFDVMAEIQNKELHTYDGIVAVGGDGF 229 (516)
T ss_pred ---HhcCCccEEEEEcCCCCCCcccchhhh-hhhhEEeeecceeEEEEccccchhhhhhhCCHhhhhhcccEEEecCchh
Confidence 124899999999999999999999975 999999999999999999999999999887522 23899999999999
Q ss_pred HHHHHHHHHcCCCcccC------------CCccEEEeecCCcchhhhhhcCCCCHHHHHHHHHhCceeEEeEEEEEEeec
Q 003790 349 INEVLNGLLSRGNQKEG------------ISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLTATDVFAVEWIQT 416 (795)
Q Consensus 349 lnEVvNGL~~r~d~~~a------------~~iPLGIIP~GTGNdfArsllGi~dp~~Aa~~IlkG~~~~IDlg~V~~~~~ 416 (795)
+||++||++.|.+...+ ..+.+||||+||+|.+..+..|.+|+...+..|+-|...-+|++.|... +
T Consensus 230 FnEiL~G~llrtQ~~ag~~i~~P~~~lv~~~~RfGiIpAGStd~iv~~t~gt~D~~TSAlHI~lG~~l~vDVctVht~-~ 308 (516)
T KOG1115|consen 230 FNEILNGYLLRTQEVAGFRIEDPDHPLVSERPRFGIIPAGSTDAIVMCTTGTRDPVTSALHIILGRKLFVDVCTVHTI-E 308 (516)
T ss_pred HHHHHhhhhhhhhhhcCcccCCCCCcccCCCceeeeecCCCcCeEEEEeccCCccccceeeeEeccceeeeeeeeeec-c
Confidence 99999999877443211 2477999999999999998889999999999999999999999999852 3
Q ss_pred ceeEEEEEEEEEeeeccchhhhHHHHhhcCcHHHHHHHHHHHhcCCceEEEEEEecCCccccccccccccceeecCceee
Q 003790 417 GVIHFGMTVSYYGFVSDVLELSEKYQKRFGPLRYFVAGFLKFLCLPKYSYEVEYLPASKEDLEGKQSAEREVVDMSDLYT 496 (795)
Q Consensus 417 g~~~ffln~~g~GfdAdV~~~sek~Rr~lG~lrY~laal~~L~~~r~y~~~I~~~p~~~~~~~g~~~~~~ek~e~~~~~v 496 (795)
.-.+|+++.+|+||.+||..++|+|| |||+.||.+++++.+++++.|+++|+|+|+..+. +
T Consensus 309 kLiRysaSa~gYGFyGDvl~dSEKYR-WmGp~RYDfsglKtflkH~~YegeVsFlpa~sen-------~----------- 369 (516)
T KOG1115|consen 309 KLIRYSASAAGYGFYGDVLSDSEKYR-WMGPKRYDFSGLKTFLKHRSYEGEVSFLPAESEN-------P----------- 369 (516)
T ss_pred hheeeehhhhcccccchhhhhhhhhh-ccCchhhhhHHHHHHHhccccceEEEecccccCC-------c-----------
Confidence 34679999999999999999999998 9999999999999999999999999998654321 0
Q ss_pred eeeccCCCCCCcccCCCCCcCCCCCCCCCCCCCCCcccCCCCCCCCCcccccCCCcccccccCCCCCCCCCCcccCCCCC
Q 003790 497 DIMRKSKNEGMPRASSLSSIDSIMTPSRMSGGDPDTTCSSTHASTEPSEYVRGLDPKSKRLSSGRSNVMAEPEVIHPQLP 576 (795)
Q Consensus 497 ~V~Nr~~GgG~~iaP~A~~~d~~~t~~~~~DG~Ldvv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~ 576 (795)
..|+.
T Consensus 370 --------------------------------------------------------------------~qe~~------- 374 (516)
T KOG1115|consen 370 --------------------------------------------------------------------CQEPC------- 374 (516)
T ss_pred --------------------------------------------------------------------hhccc-------
Confidence 00100
Q ss_pred CCCCCCCCCCcccccccccccccccCCCCCcCCCCCcCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003790 577 LSTTPNWPRTRSKSRTDKWTGLTVAHDPSRCSWGNTATNDKEDISSTLSDPGPIWDAEPKWDTEPNWDVENPIELPGPSD 656 (795)
Q Consensus 577 ~~~~~~~~~~~s~~r~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgp~~ 656 (795)
+ . +++ +.
T Consensus 375 ----~------------------------~-------------------------------------------g~~-~~- 381 (516)
T KOG1115|consen 375 ----P------------------------S-------------------------------------------GAS-LH- 381 (516)
T ss_pred ----c------------------------c-------------------------------------------cCC-cc-
Confidence 0 0 000 00
Q ss_pred CcccCcccCCCCCCCCCcEEEeccEEEEEEecccccccCCCCccCcCCCCCCCeEEEEEEcCcChHHHHHHHHHh-ccCC
Q 003790 657 DVEAGTKKEGIPRYEENWIVKKGQYLGIMICNHACRTVQSAQVVAPRAEYDDNTMDMLLVHGSGRLRLARFFLLL-QMGR 735 (795)
Q Consensus 657 ~l~~~~~~~~lp~~~~~W~~ieG~Fv~v~v~N~~~~~~~~d~~lAP~A~l~DG~LDLvlV~~~sR~~Ll~~l~~~-~~G~ 735 (795)
..++.|..+.|+|+-|..|+++|.|-...-.+||.+.++||.+||++++.++|..+++||.+. ..+.
T Consensus 382 ------------~~~k~Wq~~~g~Fl~V~c~aipciC~~~PrGLaP~T~LndGs~dLil~R~~SRF~fi~fl~r~a~~~~ 449 (516)
T KOG1115|consen 382 ------------TRSKTWQRNTGRFLKVLCRAIPCICNSKPRGLAPSTTLNDGSEDLILCRTKSRFLFIGFLVRSARNER 449 (516)
T ss_pred ------------cCcchhhhhhhheeeeeEeeccccccCCCCCcCCccccCCCccceeeeecccchHHHHHHHHHhhccc
Confidence 012579999999999999999999888999999999999999999999999999999999998 5688
Q ss_pred CCCCCceEEEEEEEEEEEecCCCC-----CceeecCceeecCeeEEEeeecccccccccccCC
Q 003790 736 HLSLPYVEYVKVKSVKIKAGKHTH-----NSCGIDGELFPLNGQVISSLLPEQCRLIGRSHDH 793 (795)
Q Consensus 736 hl~~P~V~~ikvka~rIep~~~~~-----~~i~VDGE~ip~~~~V~~~vlP~~~rlig~~~~~ 793 (795)
.++++||+.+.|..|..-+...+. ..|++|||++....++|++|+|++++|+||.++.
T Consensus 450 qfdf~fVe~y~v~~v~~~s~~~d~~~~d~~eWN~DGeile~p~~lh~rlHpqLIslfgr~~ee 512 (516)
T KOG1115|consen 450 QFDFLFVEAYLVDGVLHLSLIKDCSRPDYLEWNLDGEILEQPKPLHFRLHPQLISLFGRDAEE 512 (516)
T ss_pred ccCceeeeeeeeeeEEEEeecCCCCCCCcceeccCcchhcCCcceEEEechhhHhHhccchhh
Confidence 999999999999999988753332 2389999999877799999999999999998753
No 5
>PRK11914 diacylglycerol kinase; Reviewed
Probab=100.00 E-value=1.3e-47 Score=412.35 Aligned_cols=295 Identities=24% Similarity=0.329 Sum_probs=257.0
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHH
Q 003790 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL 356 (795)
.++|++||+||.||++++.+.|. .+.+.|+++++++.++.|+.++|+.++++++... .+|.||++|||||||||+|+|
T Consensus 7 ~~~~~~iI~NP~sG~g~~~~~~~-~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~-~~d~vvv~GGDGTi~evv~~l 84 (306)
T PRK11914 7 EIGKVTVLTNPLSGHGAAPHAAE-RAIARLHHRGVDVVEIVGTDAHDARHLVAAALAK-GTDALVVVGGDGVISNALQVL 84 (306)
T ss_pred CCceEEEEECCCCCCCcHHHHHH-HHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhc-CCCEEEEECCchHHHHHhHHh
Confidence 46899999999999999888885 5677899999999999999999999999987654 479999999999999999999
Q ss_pred HcCCCcccCCCccEEEeecCCcchhhhhhcCC-C-CHHHHHHHHHhCceeEEeEEEEEEeecceeEEEEEEEEEeeeccc
Q 003790 357 LSRGNQKEGISIPIGIIPAGSDNSLVWTVLGV-R-DPVSAALAIVKGGLTATDVFAVEWIQTGVIHFGMTVSYYGFVSDV 434 (795)
Q Consensus 357 ~~r~d~~~a~~iPLGIIP~GTGNdfArsllGi-~-dp~~Aa~~IlkG~~~~IDlg~V~~~~~g~~~ffln~~g~GfdAdV 434 (795)
+.. ++||||||+||+|+|||+ +|+ . ++..|+..|..|.++++|+++|+.. ++..+||++++++||+|+|
T Consensus 85 ~~~-------~~~lgiiP~GT~NdfAr~-lg~~~~~~~~a~~~i~~g~~~~iDlg~v~~~-~~~~~~f~n~~~~G~~a~v 155 (306)
T PRK11914 85 AGT-------DIPLGIIPAGTGNDHARE-FGIPTGDPEAAADVIVDGWTETVDLGRIQDD-DGIVKWFGTVAATGFDSLV 155 (306)
T ss_pred ccC-------CCcEEEEeCCCcchhHHH-cCCCCCCHHHHHHHHHcCCceEEEEEEEecC-CCCcEEEEEEEeeehHHHH
Confidence 754 589999999999999997 665 3 6999999999999999999999842 2223588999999999999
Q ss_pred hhhhHHHHhhcCcHHHHHHHHHHHhcCCceEEEEEEecCCccccccccccccceeecCceeeeeeccCCCCCCcccCCCC
Q 003790 435 LELSEKYQKRFGPLRYFVAGFLKFLCLPKYSYEVEYLPASKEDLEGKQSAEREVVDMSDLYTDIMRKSKNEGMPRASSLS 514 (795)
Q Consensus 435 ~~~sek~Rr~lG~lrY~laal~~L~~~r~y~~~I~~~p~~~~~~~g~~~~~~ek~e~~~~~v~V~Nr~~GgG~~iaP~A~ 514 (795)
....++.|+.+|+++|++++++.++++++++++|+++
T Consensus 156 ~~~~~~~k~~~G~~aY~~~~l~~l~~~~~~~~~i~~d------------------------------------------- 192 (306)
T PRK11914 156 TDRANRMRWPHGRMRYNLAMLAELSKLRPLPFRLVLD------------------------------------------- 192 (306)
T ss_pred HHHHHhccccCCchhhHHHHHHHHHhcCCCcEEEEEe-------------------------------------------
Confidence 8877888767899999999999999988888887652
Q ss_pred CcCCCCCCCCCCCCCCCcccCCCCCCCCCcccccCCCcccccccCCCCCCCCCCcccCCCCCCCCCCCCCCCcccccccc
Q 003790 515 SIDSIMTPSRMSGGDPDTTCSSTHASTEPSEYVRGLDPKSKRLSSGRSNVMAEPEVIHPQLPLSTTPNWPRTRSKSRTDK 594 (795)
Q Consensus 515 ~~d~~~t~~~~~DG~Ldvv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~s~~r~~~ 594 (795)
T Consensus 193 -------------------------------------------------------------------------------- 192 (306)
T PRK11914 193 -------------------------------------------------------------------------------- 192 (306)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCCcCCCCCcCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCcccCCCCCCCCCc
Q 003790 595 WTGLTVAHDPSRCSWGNTATNDKEDISSTLSDPGPIWDAEPKWDTEPNWDVENPIELPGPSDDVEAGTKKEGIPRYEENW 674 (795)
Q Consensus 595 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgp~~~l~~~~~~~~lp~~~~~W 674 (795)
++
T Consensus 193 ------------------------------------------------------------------------------g~ 194 (306)
T PRK11914 193 ------------------------------------------------------------------------------GT 194 (306)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 01
Q ss_pred EEEeccEEEEEEecccccccCCCCccCcCCCCCCCeEEEEEEcCcChHHHHHHHHHhccCCCCCCCceEEEEEEEEEEEe
Q 003790 675 IVKKGQYLGIMICNHACRTVQSAQVVAPRAEYDDNTMDMLLVHGSGRLRLARFFLLLQMGRHLSLPYVEYVKVKSVKIKA 754 (795)
Q Consensus 675 ~~ieG~Fv~v~v~N~~~~~~~~d~~lAP~A~l~DG~LDLvlV~~~sR~~Ll~~l~~~~~G~hl~~P~V~~ikvka~rIep 754 (795)
+.++++++++.++|+++| |..+.++|.|.++||.|||++++..++++++++|..+..|+|+..|.|+++++++++|+.
T Consensus 195 ~~~~~~~~~~~v~N~~~~--GG~~~~~p~a~~~DG~ldv~~v~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~i~i~~ 272 (306)
T PRK11914 195 EEIVTDLTLAAFGNTRSY--GGGMLICPNADHTDGLLDITMVQSASRTRLLRLFPTVFKGTHVELDEVSTARAKTVHVEC 272 (306)
T ss_pred eEEEeeEEEEEEeCcccc--cCCceeCCCCcCCCCcEEEEEEecCCHHHHHHHHHHhcCCcccCCCcEEEEEeEEEEEEc
Confidence 123346778889999974 888999999999999999999999999999999999999999999999999999999997
Q ss_pred cCCCCCceeecCceeecCeeEEEeeeccccccccc
Q 003790 755 GKHTHNSCGIDGELFPLNGQVISSLLPEQCRLIGR 789 (795)
Q Consensus 755 ~~~~~~~i~VDGE~ip~~~~V~~~vlP~~~rlig~ 789 (795)
. ...+++|||.+. ..+++++++|+.++++--
T Consensus 273 ~---~~~~~~DGE~~~-~~p~~i~v~p~al~v~vp 303 (306)
T PRK11914 273 P---GINAYADGDFAC-PLPAEISAVPGALQILRP 303 (306)
T ss_pred C---CcceecCCCcCC-CCceEEEEEcCeEEEECC
Confidence 4 356899999986 448999999999999863
No 6
>PRK13059 putative lipid kinase; Reviewed
Probab=100.00 E-value=1.4e-45 Score=395.50 Aligned_cols=289 Identities=21% Similarity=0.283 Sum_probs=246.3
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHH
Q 003790 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLL 357 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~ 357 (795)
+++++||+||.||++++.+.|+ .+++.|+++|+++.++.|+..+++ +.++++... .+|.||++|||||||||+|+|+
T Consensus 1 ~~~~~~I~NP~aG~g~~~~~~~-~i~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~~-~~d~vi~~GGDGTv~evv~gl~ 77 (295)
T PRK13059 1 MKKVKFIYNPYSGENAIISELD-KVIRIHQEKGYLVVPYRISLEYDL-KNAFKDIDE-SYKYILIAGGDGTVDNVVNAMK 77 (295)
T ss_pred CcEEEEEECCcccchhHHHHHH-HHHHHHHHCCcEEEEEEccCcchH-HHHHHHhhc-CCCEEEEECCccHHHHHHHHHH
Confidence 3689999999999999877774 688899999999988888776654 555555433 4799999999999999999999
Q ss_pred cCCCcccCCCccEEEeecCCcchhhhhhcCCCCHHHHHHHHHhCceeEEeEEEEEEeecceeEEEEEEEEEeeeccchhh
Q 003790 358 SRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLTATDVFAVEWIQTGVIHFGMTVSYYGFVSDVLEL 437 (795)
Q Consensus 358 ~r~d~~~a~~iPLGIIP~GTGNdfArsllGi~dp~~Aa~~IlkG~~~~IDlg~V~~~~~g~~~ffln~~g~GfdAdV~~~ 437 (795)
+.. .++||||||+||||+|||++..+.++.+|+..|+.|+.+++|+++++. +||+|++++||+|+|+..
T Consensus 78 ~~~-----~~~~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~~g~~~~vDlg~v~~------~~f~n~~~~G~~a~v~~~ 146 (295)
T PRK13059 78 KLN-----IDLPIGILPVGTANDFAKFLGMPTDIGEACEQILKSKPKKVDLGKIND------KYFINVASTGLFTDVSQK 146 (295)
T ss_pred hcC-----CCCcEEEECCCCHhHHHHHhCCCCCHHHHHHHHHhCCcEEeeEEEECC------EEEEEEEeeeechhhhhh
Confidence 653 258999999999999999844457999999999999999999999962 488999999999999976
Q ss_pred h-HHHHhhcCcHHHHHHHHHHHhcCCceEEEEEEecCCccccccccccccceeecCceeeeeeccCCCCCCcccCCCCCc
Q 003790 438 S-EKYQKRFGPLRYFVAGFLKFLCLPKYSYEVEYLPASKEDLEGKQSAEREVVDMSDLYTDIMRKSKNEGMPRASSLSSI 516 (795)
Q Consensus 438 s-ek~Rr~lG~lrY~laal~~L~~~r~y~~~I~~~p~~~~~~~g~~~~~~ek~e~~~~~v~V~Nr~~GgG~~iaP~A~~~ 516 (795)
. .+.|+++|.++|++++++.++++++|+++|+++
T Consensus 147 ~~~~~k~~~G~~aY~~~~~~~l~~~~~~~~~i~~d--------------------------------------------- 181 (295)
T PRK13059 147 TDVNLKNTIGKLAYYLKGLEELPNFRKLKVKVTSE--------------------------------------------- 181 (295)
T ss_pred ccHHHhhCcchHHHHHHHHHHHhcCCCeeEEEEEC---------------------------------------------
Confidence 4 456678999999999999999888888877541
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCCCCCcccccCCCcccccccCCCCCCCCCCcccCCCCCCCCCCCCCCCcccccccccc
Q 003790 517 DSIMTPSRMSGGDPDTTCSSTHASTEPSEYVRGLDPKSKRLSSGRSNVMAEPEVIHPQLPLSTTPNWPRTRSKSRTDKWT 596 (795)
Q Consensus 517 d~~~t~~~~~DG~Ldvv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~s~~r~~~~~ 596 (795)
T Consensus 182 -------------------------------------------------------------------------------- 181 (295)
T PRK13059 182 -------------------------------------------------------------------------------- 181 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCcCCCCCcCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCcccCCCCCCCCCcEE
Q 003790 597 GLTVAHDPSRCSWGNTATNDKEDISSTLSDPGPIWDAEPKWDTEPNWDVENPIELPGPSDDVEAGTKKEGIPRYEENWIV 676 (795)
Q Consensus 597 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgp~~~l~~~~~~~~lp~~~~~W~~ 676 (795)
+++
T Consensus 182 -----------------------------------------------------------------------------~~~ 184 (295)
T PRK13059 182 -----------------------------------------------------------------------------EVN 184 (295)
T ss_pred -----------------------------------------------------------------------------CEE
Confidence 012
Q ss_pred EeccEEEEEEecccccccCCCCccCcCCCCCCCeEEEEEEcCcChHHHHHHHHHhccCCCCCCCc-eEEEEEEEEEEEec
Q 003790 677 KKGQYLGIMICNHACRTVQSAQVVAPRAEYDDNTMDMLLVHGSGRLRLARFFLLLQMGRHLSLPY-VEYVKVKSVKIKAG 755 (795)
Q Consensus 677 ieG~Fv~v~v~N~~~~~~~~d~~lAP~A~l~DG~LDLvlV~~~sR~~Ll~~l~~~~~G~hl~~P~-V~~ikvka~rIep~ 755 (795)
+++++.++.++|.++ .| .+.++|.|.++||.|||++++..++++++.+|..+..|+|...|. |+|+++++++|++.
T Consensus 185 ~~~~~~~~~v~N~~~--~G-g~~~~p~a~~~DG~Ldv~i~~~~~~~~~l~~~~~~~~G~~~~~~~~v~~~~~~~i~i~~~ 261 (295)
T PRK13059 185 FDGDMYLMLVFNGQT--AG-NFNLAYKAEVDDGLLDVIIIKACPIIDLIPLFIKVLKGEHLEDVNGLIYFKTDKLEIESN 261 (295)
T ss_pred EEeeEEEEEEEcCcc--cc-CcccCCcccCCCCeEEEEEEcCCCHHHHHHHHHHHHcCCccCCCccEEEEEeeEEEEEeC
Confidence 234566778899886 46 478999999999999999999999999999999999999999998 99999999999985
Q ss_pred CCCCCceeecCceeecCeeEEEeeecccccccc
Q 003790 756 KHTHNSCGIDGELFPLNGQVISSLLPEQCRLIG 788 (795)
Q Consensus 756 ~~~~~~i~VDGE~ip~~~~V~~~vlP~~~rlig 788 (795)
.+..+++|||++. ..+++++++|++++|+.
T Consensus 262 --~~~~~~~DGE~~~-~~p~~i~v~p~al~v~~ 291 (295)
T PRK13059 262 --EEIVTDIDGERGP-DFPLNIECIKGGLKVLG 291 (295)
T ss_pred --CCceEEeCCCcCC-CCcEEEEEecCeeEEEe
Confidence 4567899999985 56899999999999987
No 7
>PRK13337 putative lipid kinase; Reviewed
Probab=100.00 E-value=9.8e-46 Score=397.86 Aligned_cols=291 Identities=24% Similarity=0.306 Sum_probs=253.2
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHH
Q 003790 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLL 357 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~ 357 (795)
++|++||+||+||++++.+.|. .+.+.|++++++++++.|++.+|+.++++++... .+|.||++|||||||||+|+|+
T Consensus 1 ~~r~~~I~Np~aG~~~~~~~~~-~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~-~~d~vvv~GGDGTl~~vv~gl~ 78 (304)
T PRK13337 1 MKRARIIYNPTSGRELFKKNLP-DVLQKLEQAGYETSAHATTGPGDATLAAERAVER-KFDLVIAAGGDGTLNEVVNGIA 78 (304)
T ss_pred CceEEEEECCcccchhHHHHHH-HHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhc-CCCEEEEEcCCCHHHHHHHHHh
Confidence 3689999999999998777775 5777899999999999999999999999987644 4799999999999999999999
Q ss_pred cCCCcccCCCccEEEeecCCcchhhhhhcCCCCHHHHHHHHHhCceeEEeEEEEEEeecceeEEEEEEEEEeeeccchhh
Q 003790 358 SRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLTATDVFAVEWIQTGVIHFGMTVSYYGFVSDVLEL 437 (795)
Q Consensus 358 ~r~d~~~a~~iPLGIIP~GTGNdfArsllGi~dp~~Aa~~IlkG~~~~IDlg~V~~~~~g~~~ffln~~g~GfdAdV~~~ 437 (795)
.+.+ ++||||||+||||+|||++..+.++.+|+..|..|..+++|+++++. +||++++|+||+++++..
T Consensus 79 ~~~~-----~~~lgiiP~GT~NdfAr~lgi~~~~~~a~~~i~~g~~~~vDlg~vn~------~~fln~~g~G~~a~v~~~ 147 (304)
T PRK13337 79 EKEN-----RPKLGIIPVGTTNDFARALHVPRDIEKAADVIIEGHTVPVDIGKANN------RYFINIAGGGRLTELTYE 147 (304)
T ss_pred hCCC-----CCcEEEECCcCHhHHHHHcCCCCCHHHHHHHHHcCCeEEEEEEEECC------EEEEeeehhhHHHHHHHh
Confidence 7642 57999999999999999843457899999999999999999999972 478999999999999854
Q ss_pred -hHHHHhhcCcHHHHHHHHHHHhcCCceEEEEEEecCCccccccccccccceeecCceeeeeeccCCCCCCcccCCCCCc
Q 003790 438 -SEKYQKRFGPLRYFVAGFLKFLCLPKYSYEVEYLPASKEDLEGKQSAEREVVDMSDLYTDIMRKSKNEGMPRASSLSSI 516 (795)
Q Consensus 438 -sek~Rr~lG~lrY~laal~~L~~~r~y~~~I~~~p~~~~~~~g~~~~~~ek~e~~~~~v~V~Nr~~GgG~~iaP~A~~~ 516 (795)
..+.|+++|.++|++++++.+..++.++++|+++
T Consensus 148 ~~~~~k~~~G~~aY~~~~~~~l~~~~~~~~~i~~d--------------------------------------------- 182 (304)
T PRK13337 148 VPSKLKTMLGQLAYYLKGIEMLPSLKATDVRIEYD--------------------------------------------- 182 (304)
T ss_pred cCHHHhcCcccHHHHHHHHHHHhhCCCceEEEEEC---------------------------------------------
Confidence 4667778999999999999998888777776541
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCCCCCcccccCCCcccccccCCCCCCCCCCcccCCCCCCCCCCCCCCCcccccccccc
Q 003790 517 DSIMTPSRMSGGDPDTTCSSTHASTEPSEYVRGLDPKSKRLSSGRSNVMAEPEVIHPQLPLSTTPNWPRTRSKSRTDKWT 596 (795)
Q Consensus 517 d~~~t~~~~~DG~Ldvv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~s~~r~~~~~ 596 (795)
T Consensus 183 -------------------------------------------------------------------------------- 182 (304)
T PRK13337 183 -------------------------------------------------------------------------------- 182 (304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCcCCCCCcCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCcccCCCCCCCCCcEE
Q 003790 597 GLTVAHDPSRCSWGNTATNDKEDISSTLSDPGPIWDAEPKWDTEPNWDVENPIELPGPSDDVEAGTKKEGIPRYEENWIV 676 (795)
Q Consensus 597 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgp~~~l~~~~~~~~lp~~~~~W~~ 676 (795)
++.
T Consensus 183 -----------------------------------------------------------------------------~~~ 185 (304)
T PRK13337 183 -----------------------------------------------------------------------------GKL 185 (304)
T ss_pred -----------------------------------------------------------------------------CeE
Confidence 112
Q ss_pred EeccEEEEEEecccccccCCCCccCcCCCCCCCeEEEEEEcCcChHHHHHHHHHhccCCCCCCCceEEEEEEEEEEEecC
Q 003790 677 KKGQYLGIMICNHACRTVQSAQVVAPRAEYDDNTMDMLLVHGSGRLRLARFFLLLQMGRHLSLPYVEYVKVKSVKIKAGK 756 (795)
Q Consensus 677 ieG~Fv~v~v~N~~~~~~~~d~~lAP~A~l~DG~LDLvlV~~~sR~~Ll~~l~~~~~G~hl~~P~V~~ikvka~rIep~~ 756 (795)
+++++.+++++|++++ +....++|.|.++||.|||++++..++++++++|..+..|+|...|+|.++++++++|++.
T Consensus 186 ~~~~~~~~~v~n~~~~--gg~~~~~p~a~~~DG~ldv~iv~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~~~i~~~- 262 (304)
T PRK13337 186 FQGEIMLFLLGLTNSV--GGFEKLAPDASLDDGYFDLIIVKKANLAELIHIATLALRGEHIKHPKVIYTKANRIKVSSF- 262 (304)
T ss_pred EEeEEEEEEEEcCccc--CCccccCCcccCCCCeEEEEEEcCCCHHHHHHHHHHHHcCCcCCCCcEEEEEccEEEEEcC-
Confidence 2346677888898874 7788999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCceeecCceeecCeeEEEeeecccccccc
Q 003790 757 HTHNSCGIDGELFPLNGQVISSLLPEQCRLIG 788 (795)
Q Consensus 757 ~~~~~i~VDGE~ip~~~~V~~~vlP~~~rlig 788 (795)
.+..+++|||++. ..+++++++|+.++|+-
T Consensus 263 -~~~~~~iDGE~~~-~~p~~i~v~p~al~v~~ 292 (304)
T PRK13337 263 -DKMQLNLDGEYGG-KLPAEFENLYRHIEVFV 292 (304)
T ss_pred -CCCeEEeCCCcCC-CCCEEEEEecceEEEEe
Confidence 4567899999996 45899999999999986
No 8
>PRK13055 putative lipid kinase; Reviewed
Probab=100.00 E-value=3e-45 Score=399.45 Aligned_cols=294 Identities=24% Similarity=0.336 Sum_probs=251.8
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC-CcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHH
Q 003790 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT-SAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~-~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL 356 (795)
++|++||+||.||++++.+.| ..++++|++++++++++.|+ ..+|+.++++++... .+|.||++|||||||||+|+|
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~-~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~-~~d~vvv~GGDGTl~evvngl 79 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNV-ADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEA-GFDLIIAAGGDGTINEVVNGI 79 (334)
T ss_pred CceEEEEECCCCCchhHHHHH-HHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhc-CCCEEEEECCCCHHHHHHHHH
Confidence 478999999999999988877 47889999999999988776 568999999887654 479999999999999999999
Q ss_pred HcCCCcccCCCccEEEeecCCcchhhhhhcCCC-CHHHHHHHHHhCceeEEeEEEEEEeecceeEEEEEEEEEeeeccch
Q 003790 357 LSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVR-DPVSAALAIVKGGLTATDVFAVEWIQTGVIHFGMTVSYYGFVSDVL 435 (795)
Q Consensus 357 ~~r~d~~~a~~iPLGIIP~GTGNdfArsllGi~-dp~~Aa~~IlkG~~~~IDlg~V~~~~~g~~~ffln~~g~GfdAdV~ 435 (795)
+..+. .+||||||+||||+|||++..+. ++.+|+..|++|+++++|++.++. + +||++++|+||+|+|+
T Consensus 80 ~~~~~-----~~~LgiiP~GTgNdfAr~Lgi~~~~~~~a~~~l~~g~~~~vD~g~v~~---~--~~F~n~ag~G~da~v~ 149 (334)
T PRK13055 80 APLEK-----RPKMAIIPAGTTNDYARALKIPRDNPVEAAKVILKNQTIKMDIGRANE---D--KYFINIAAGGSLTELT 149 (334)
T ss_pred hhcCC-----CCcEEEECCCchhHHHHHcCCCCcCHHHHHHHHHcCCcEEeeEEEECC---C--cEEEEEehhccchHHH
Confidence 97532 57999999999999999844446 799999999999999999999951 2 4789999999999998
Q ss_pred h-hhHHHHhhcCcHHHHHHHHHHHhcCCceEEEEEEecCCccccccccccccceeecCceeeeeeccCCCCCCcccCCCC
Q 003790 436 E-LSEKYQKRFGPLRYFVAGFLKFLCLPKYSYEVEYLPASKEDLEGKQSAEREVVDMSDLYTDIMRKSKNEGMPRASSLS 514 (795)
Q Consensus 436 ~-~sek~Rr~lG~lrY~laal~~L~~~r~y~~~I~~~p~~~~~~~g~~~~~~ek~e~~~~~v~V~Nr~~GgG~~iaP~A~ 514 (795)
. ..+..|+++|+++|++++++.|+++++|+++|+++
T Consensus 150 ~~~~~~~k~~~G~laY~~~~~~~l~~~~~~~~~i~~d------------------------------------------- 186 (334)
T PRK13055 150 YSVPSQLKSMFGYLAYLAKGAELLPRVSPVPVRITYD------------------------------------------- 186 (334)
T ss_pred HhcCHHHHhhccHHHHHHHHHHHHHhcCCeeEEEEEC-------------------------------------------
Confidence 5 45667778999999999999999999888888652
Q ss_pred CcCCCCCCCCCCCCCCCcccCCCCCCCCCcccccCCCcccccccCCCCCCCCCCcccCCCCCCCCCCCCCCCcccccccc
Q 003790 515 SIDSIMTPSRMSGGDPDTTCSSTHASTEPSEYVRGLDPKSKRLSSGRSNVMAEPEVIHPQLPLSTTPNWPRTRSKSRTDK 594 (795)
Q Consensus 515 ~~d~~~t~~~~~DG~Ldvv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~s~~r~~~ 594 (795)
|
T Consensus 187 -------------~------------------------------------------------------------------ 187 (334)
T PRK13055 187 -------------E------------------------------------------------------------------ 187 (334)
T ss_pred -------------C------------------------------------------------------------------
Confidence 0
Q ss_pred cccccccCCCCCcCCCCCcCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCcccCCCCCCCCCc
Q 003790 595 WTGLTVAHDPSRCSWGNTATNDKEDISSTLSDPGPIWDAEPKWDTEPNWDVENPIELPGPSDDVEAGTKKEGIPRYEENW 674 (795)
Q Consensus 595 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgp~~~l~~~~~~~~lp~~~~~W 674 (795)
T Consensus 188 -------------------------------------------------------------------------------- 187 (334)
T PRK13055 188 -------------------------------------------------------------------------------- 187 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeccEEEEEEecccccccCCCCccCcCCCCCCCeEEEEEEcCcChHHHHHHHHHhcc-CCCCCCCceEEEEEEEEEEE
Q 003790 675 IVKKGQYLGIMICNHACRTVQSAQVVAPRAEYDDNTMDMLLVHGSGRLRLARFFLLLQM-GRHLSLPYVEYVKVKSVKIK 753 (795)
Q Consensus 675 ~~ieG~Fv~v~v~N~~~~~~~~d~~lAP~A~l~DG~LDLvlV~~~sR~~Ll~~l~~~~~-G~hl~~P~V~~ikvka~rIe 753 (795)
..+++++.+++++|+.+ .|....++|.|.++||.|||++++..+++++++++..+.. |+|...|+|+|+++++|+|+
T Consensus 188 ~~~~~~~~~~~v~n~~~--~Gg~~~~~p~a~~~DG~ldv~i~~~~~~~~~l~~~~~~~~~G~~~~~~~v~~~~~~~i~I~ 265 (334)
T PRK13055 188 GVFEGKISMFFLALTNS--VGGFEQIVPDAKLDDGKFTLIIVKTANLFELLHLMALILNGGKHIDDPRVIYIKTSKLTIE 265 (334)
T ss_pred EEEEEEEEEEEEEcCcc--cCCccccCCCCcCCCceEEEEEEcCCCHHHHHHHHHHHHhCCCCCCCCcEEEEEccEEEEE
Confidence 01123566777888886 4778889999999999999999999999999999999998 99999999999999999999
Q ss_pred ecCCCCCceeecCceeecCeeEEEeeecccccccc
Q 003790 754 AGKHTHNSCGIDGELFPLNGQVISSLLPEQCRLIG 788 (795)
Q Consensus 754 p~~~~~~~i~VDGE~ip~~~~V~~~vlP~~~rlig 788 (795)
+.......+++|||++. ..+++++++|++++++-
T Consensus 266 ~~~~~~~~~~iDGE~~~-~~pv~i~v~p~al~v~~ 299 (334)
T PRK13055 266 PLGDDRLMVNLDGEYGG-DAPMTFENLKQHIEFFA 299 (334)
T ss_pred eCCCCcceEeeCCCcCC-CCcEEEEEEcCeEEEEe
Confidence 75222367899999985 56899999999999986
No 9
>PRK13057 putative lipid kinase; Reviewed
Probab=100.00 E-value=1.9e-44 Score=384.69 Aligned_cols=282 Identities=23% Similarity=0.353 Sum_probs=244.8
Q ss_pred EEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCC
Q 003790 282 LVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGN 361 (795)
Q Consensus 282 lVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d 361 (795)
+||+||.||+++ +.+ ..+++.|+++|+++.+..|++.+|+.++++++. ..+|.||++|||||||||+|+|+.+
T Consensus 1 ~~I~Np~sg~~~--~~~-~~i~~~l~~~g~~~~~~~t~~~~~a~~~~~~~~--~~~d~iiv~GGDGTv~~v~~~l~~~-- 73 (287)
T PRK13057 1 LLLVNRHARSGR--AAL-AAARAALEAAGLELVEPPAEDPDDLSEVIEAYA--DGVDLVIVGGGDGTLNAAAPALVET-- 73 (287)
T ss_pred CEEECCCCCCcc--hhH-HHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHH--cCCCEEEEECchHHHHHHHHHHhcC--
Confidence 489999999887 346 478889999999999999999999999999853 3479999999999999999999865
Q ss_pred cccCCCccEEEeecCCcchhhhhhcCCCCHHHHHHHHHhCceeEEeEEEEEEeecceeEEEEEEEEEeeeccchhh-hHH
Q 003790 362 QKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLTATDVFAVEWIQTGVIHFGMTVSYYGFVSDVLEL-SEK 440 (795)
Q Consensus 362 ~~~a~~iPLGIIP~GTGNdfArsllGi~dp~~Aa~~IlkG~~~~IDlg~V~~~~~g~~~ffln~~g~GfdAdV~~~-sek 440 (795)
++|||+||+||||+|||++..+.++.+++..|..|..+++|+++++ + +||++++++||+|+|+.. .++
T Consensus 74 -----~~~lgiiP~GT~Ndfar~Lg~~~~~~~a~~~i~~~~~~~vD~g~~~----~--~~f~n~~g~G~da~v~~~~~~~ 142 (287)
T PRK13057 74 -----GLPLGILPLGTANDLARTLGIPLDLEAAARVIATGQVRRIDLGWVN----G--HYFFNVASLGLSAELARRLTKE 142 (287)
T ss_pred -----CCcEEEECCCCccHHHHHcCCCCCHHHHHHHHHcCCeEEeeEEEEC----C--EEEEEEEecCccHHHHHHhhHH
Confidence 5899999999999999984445789999999999999999999996 2 478999999999999864 345
Q ss_pred HHhhcCcHHHHHHHHHHHhcCCceEEEEEEecCCccccccccccccceeecCceeeeeeccCCCCCCcccCCCCCcCCCC
Q 003790 441 YQKRFGPLRYFVAGFLKFLCLPKYSYEVEYLPASKEDLEGKQSAEREVVDMSDLYTDIMRKSKNEGMPRASSLSSIDSIM 520 (795)
Q Consensus 441 ~Rr~lG~lrY~laal~~L~~~r~y~~~I~~~p~~~~~~~g~~~~~~ek~e~~~~~v~V~Nr~~GgG~~iaP~A~~~d~~~ 520 (795)
.|+.+|+++|++++++.|+++++++++|+.+
T Consensus 143 ~k~~~G~~aY~~~~~~~l~~~~~~~~~l~~d------------------------------------------------- 173 (287)
T PRK13057 143 LKRRWGTLGYAIAALRVLRRSRPFTAEIEHD------------------------------------------------- 173 (287)
T ss_pred hhccCChhHHHHHHHHHHhhCCCeEEEEEEC-------------------------------------------------
Confidence 5667899999999999999888887777541
Q ss_pred CCCCCCCCCCCcccCCCCCCCCCcccccCCCcccccccCCCCCCCCCCcccCCCCCCCCCCCCCCCcccccccccccccc
Q 003790 521 TPSRMSGGDPDTTCSSTHASTEPSEYVRGLDPKSKRLSSGRSNVMAEPEVIHPQLPLSTTPNWPRTRSKSRTDKWTGLTV 600 (795)
Q Consensus 521 t~~~~~DG~Ldvv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~s~~r~~~~~~~~~ 600 (795)
|
T Consensus 174 -------~------------------------------------------------------------------------ 174 (287)
T PRK13057 174 -------G------------------------------------------------------------------------ 174 (287)
T ss_pred -------C------------------------------------------------------------------------
Confidence 0
Q ss_pred cCCCCCcCCCCCcCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCcccCCCCCCCCCcEEEecc
Q 003790 601 AHDPSRCSWGNTATNDKEDISSTLSDPGPIWDAEPKWDTEPNWDVENPIELPGPSDDVEAGTKKEGIPRYEENWIVKKGQ 680 (795)
Q Consensus 601 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgp~~~l~~~~~~~~lp~~~~~W~~ieG~ 680 (795)
..++.+
T Consensus 175 --------------------------------------------------------------------------~~~~~~ 180 (287)
T PRK13057 175 --------------------------------------------------------------------------RTERVK 180 (287)
T ss_pred --------------------------------------------------------------------------EEEEEE
Confidence 111235
Q ss_pred EEEEEEecccccccCCCCccCcCCCCCCCeEEEEEEcCcChHHHHHHHHHhccCCCCCCCceEEEEEEEEEEEecCCCCC
Q 003790 681 YLGIMICNHACRTVQSAQVVAPRAEYDDNTMDMLLVHGSGRLRLARFFLLLQMGRHLSLPYVEYVKVKSVKIKAGKHTHN 760 (795)
Q Consensus 681 Fv~v~v~N~~~~~~~~d~~lAP~A~l~DG~LDLvlV~~~sR~~Ll~~l~~~~~G~hl~~P~V~~ikvka~rIep~~~~~~ 760 (795)
++++.++|.+++ |..+.++|.|.++||.|||++++..++++++.+|..+..|+|...|.|.++++++++|+.. .+.
T Consensus 181 ~~~~~v~N~~~~--gg~~~~~p~a~~~DG~ldv~~v~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~~~i~~~--~~~ 256 (287)
T PRK13057 181 TLQVAVGNGRYY--GGGMTVAHDATIDDGRLDLYSLEVAHWWRLLALLPALRRGRHGEWPDVRAFRTTELELRTR--KPR 256 (287)
T ss_pred EEEEEEecCccc--CCCcccCCCCCCCCceEEEEEecCCCHHHHHHHHHHHhcCCccCCCcEEEEEeeEEEEEeC--CCc
Confidence 667778899874 8889999999999999999999999999999999999999999999999999999999986 456
Q ss_pred ceeecCceeecCeeEEEeeecccccccc
Q 003790 761 SCGIDGELFPLNGQVISSLLPEQCRLIG 788 (795)
Q Consensus 761 ~i~VDGE~ip~~~~V~~~vlP~~~rlig 788 (795)
.+++|||++. ..+++++++|+.++++-
T Consensus 257 ~~~~DGE~~~-~~p~~i~v~p~al~v~~ 283 (287)
T PRK13057 257 PINTDGELTT-YTPAHFRVLPKALRVLA 283 (287)
T ss_pred EEeeCCccCC-CCCEEEEEECCeEEEEc
Confidence 7999999996 45899999999999986
No 10
>PRK00861 putative lipid kinase; Reviewed
Probab=100.00 E-value=3.1e-44 Score=385.11 Aligned_cols=288 Identities=23% Similarity=0.328 Sum_probs=240.4
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHH
Q 003790 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLL 357 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~ 357 (795)
+++++||+||.||++++.+.| +.++..|++. ++++++.|+..+|+.++++++... .+|.||++|||||||||+|+|+
T Consensus 2 ~~~~~iI~NP~sG~~~~~~~~-~~i~~~l~~~-~~~~~~~t~~~~~a~~~a~~~~~~-~~d~vv~~GGDGTl~evv~~l~ 78 (300)
T PRK00861 2 TRSACLIFNPVAGQGNPEVDL-ALIRAILEPE-MDLDIYLTTPEIGADQLAQEAIER-GAELIIASGGDGTLSAVAGALI 78 (300)
T ss_pred CceEEEEECCCCCCCchhhhH-HHHHHHHHhc-CceEEEEccCCCCHHHHHHHHHhc-CCCEEEEECChHHHHHHHHHHh
Confidence 468999999999999987777 4778888874 899999999999999999988654 4799999999999999999998
Q ss_pred cCCCcccCCCccEEEeecCCcchhhhhhcCCCCHHHHHHHHHhCceeEEeEEEEEEeecceeEEEEEEEEEeeeccchhh
Q 003790 358 SRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLTATDVFAVEWIQTGVIHFGMTVSYYGFVSDVLEL 437 (795)
Q Consensus 358 ~r~d~~~a~~iPLGIIP~GTGNdfArsllGi~dp~~Aa~~IlkG~~~~IDlg~V~~~~~g~~~ffln~~g~GfdAdV~~~ 437 (795)
.+ ++|||+||+||||+|||++..+.++.+|+..|.+|..+++|++.++ + +||+|++++||+|+|+..
T Consensus 79 ~~-------~~~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~~g~~~~iDlg~vn----~--~~fin~a~~G~~a~v~~~ 145 (300)
T PRK00861 79 GT-------DIPLGIIPRGTANAFAAALGIPDTIEEACRTILQGKTRRVDVAYCN----G--QPMILLAGIGFEAETVEE 145 (300)
T ss_pred cC-------CCcEEEEcCCchhHHHHHcCCCCCHHHHHHHHHcCCcEEeeEEEEC----C--EEEEEEEeccHHHHHHHH
Confidence 65 5899999999999999984334689999999999999999999996 2 478999999999999976
Q ss_pred hH-HHHhhcCcHHHHHHHHHHHhcCCceEEEEEEecCCccccccccccccceeecCceeeeeeccCCCCCCcccCCCCCc
Q 003790 438 SE-KYQKRFGPLRYFVAGFLKFLCLPKYSYEVEYLPASKEDLEGKQSAEREVVDMSDLYTDIMRKSKNEGMPRASSLSSI 516 (795)
Q Consensus 438 se-k~Rr~lG~lrY~laal~~L~~~r~y~~~I~~~p~~~~~~~g~~~~~~ek~e~~~~~v~V~Nr~~GgG~~iaP~A~~~ 516 (795)
.+ ..|+++|.++|++++++.++++++|+++|+++
T Consensus 146 ~~~~~k~~~G~~aY~~~~l~~l~~~~~~~~~i~~d--------------------------------------------- 180 (300)
T PRK00861 146 ADREAKNRFGILAYILSGLQQLRELESFEVEIETE--------------------------------------------- 180 (300)
T ss_pred hhHHHHhcccHHHHHHHHHHHhccCCCeeEEEEEC---------------------------------------------
Confidence 44 35568899999999999999999999888652
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCCCCCcccccCCCcccccccCCCCCCCCCCcccCCCCCCCCCCCCCCCcccccccccc
Q 003790 517 DSIMTPSRMSGGDPDTTCSSTHASTEPSEYVRGLDPKSKRLSSGRSNVMAEPEVIHPQLPLSTTPNWPRTRSKSRTDKWT 596 (795)
Q Consensus 517 d~~~t~~~~~DG~Ldvv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~s~~r~~~~~ 596 (795)
|
T Consensus 181 -----------g-------------------------------------------------------------------- 181 (300)
T PRK00861 181 -----------D-------------------------------------------------------------------- 181 (300)
T ss_pred -----------C--------------------------------------------------------------------
Confidence 0
Q ss_pred cccccCCCCCcCCCCCcCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCcccCCCCCCCCCcEE
Q 003790 597 GLTVAHDPSRCSWGNTATNDKEDISSTLSDPGPIWDAEPKWDTEPNWDVENPIELPGPSDDVEAGTKKEGIPRYEENWIV 676 (795)
Q Consensus 597 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgp~~~l~~~~~~~~lp~~~~~W~~ 676 (795)
..
T Consensus 182 ------------------------------------------------------------------------------~~ 183 (300)
T PRK00861 182 ------------------------------------------------------------------------------QI 183 (300)
T ss_pred ------------------------------------------------------------------------------eE
Confidence 00
Q ss_pred EeccEEEEEEecccccccCCC-CccCcCCCCCCCeEEEEEEcCcChHHHHH----HHHHhccCCCCCCCceEEEEEEEEE
Q 003790 677 KKGQYLGIMICNHACRTVQSA-QVVAPRAEYDDNTMDMLLVHGSGRLRLAR----FFLLLQMGRHLSLPYVEYVKVKSVK 751 (795)
Q Consensus 677 ieG~Fv~v~v~N~~~~~~~~d-~~lAP~A~l~DG~LDLvlV~~~sR~~Ll~----~l~~~~~G~hl~~P~V~~ikvka~r 751 (795)
++.+.+++.++|.+++ +.- ...+|.|.++||.|||++|+..+++++++ +|..+..|+|...|+|+|++++.++
T Consensus 184 ~~~~~~~i~v~N~~~~--~~~~~~g~p~a~~~DG~ldv~iv~~~~~~~~l~~~~~l~~~~~~g~~~~~~~v~~~~~~~i~ 261 (300)
T PRK00861 184 ITTNAVAVTVANAAPP--TSVLAQGPGAVIPDDGLLDVTIVAPKNLAEAVAASYHLLQTALQGNPAERDDIGYLRAKQVK 261 (300)
T ss_pred EEEEEEEEEEECCCCc--ccccccCCCCCCCCCceEEEEEEcCCCHHHHHHHHHHHHHHHhcCCCCCCCceEEEEccEEE
Confidence 1123445667777632 111 11268999999999999999999999985 5556678999999999999999999
Q ss_pred EEecCCCCCceeecCceeecCeeEEEeeecccccccc
Q 003790 752 IKAGKHTHNSCGIDGELFPLNGQVISSLLPEQCRLIG 788 (795)
Q Consensus 752 Iep~~~~~~~i~VDGE~ip~~~~V~~~vlP~~~rlig 788 (795)
|+.. .+..+++|||++.. .+++++++|++++++-
T Consensus 262 I~~~--~~~~~~~DGE~~~~-~p~~i~v~p~al~v~~ 295 (300)
T PRK00861 262 ITTD--PPQKVVIDGEVVGT-TPIEIECLPRSLKVFA 295 (300)
T ss_pred EEeC--CCeEEEECCccCCC-ceEEEEEECCEEEEEe
Confidence 9985 45678999999964 5899999999999986
No 11
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=100.00 E-value=6.2e-43 Score=373.12 Aligned_cols=289 Identities=25% Similarity=0.372 Sum_probs=249.3
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHH
Q 003790 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLL 357 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~ 357 (795)
++|++||+||.||++++.+.++ .+.+.|++.++++.++.|+..+|+.++++++... .+|.||++|||||||+|+|+|+
T Consensus 1 ~~~~~ii~Np~sg~~~~~~~~~-~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~-~~d~ivv~GGDGTl~~v~~~l~ 78 (293)
T TIGR00147 1 MAEAPAILNPTAGKSNDNKPLR-EVIMLLREEGMEIHVRVTWEKGDAARYVEEARKF-GVDTVIAGGGDGTINEVVNALI 78 (293)
T ss_pred CceEEEEECCCccchhhHHHHH-HHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhc-CCCEEEEECCCChHHHHHHHHh
Confidence 3689999999999988887774 6788999999999999999999998887765433 4799999999999999999998
Q ss_pred cCCCcccCCCccEEEeecCCcchhhhhhcC-CCCHHHHHHHHHhCceeEEeEEEEEEeecceeEE-EEEEEEEeeeccch
Q 003790 358 SRGNQKEGISIPIGIIPAGSDNSLVWTVLG-VRDPVSAALAIVKGGLTATDVFAVEWIQTGVIHF-GMTVSYYGFVSDVL 435 (795)
Q Consensus 358 ~r~d~~~a~~iPLGIIP~GTGNdfArsllG-i~dp~~Aa~~IlkG~~~~IDlg~V~~~~~g~~~f-fln~~g~GfdAdV~ 435 (795)
...+ .+|||+||+||+|+||++ ++ ..++.+++..+..|..+++|++.++. +| |++++++|++|+++
T Consensus 79 ~~~~-----~~~lgiiP~Gt~N~~a~~-l~i~~~~~~~~~~l~~~~~~~~Dlg~v~~------~~~fln~~g~G~~a~v~ 146 (293)
T TIGR00147 79 QLDD-----IPALGILPLGTANDFARS-LGIPEDLDKAAKLVIAGDARAIDMGQVNK------QYCFINMAGGGFGTEIT 146 (293)
T ss_pred cCCC-----CCcEEEEcCcCHHHHHHH-cCCCCCHHHHHHHHHcCCceEEEEEEECC------eEEEEEEEeechhhHhH
Confidence 7532 368999999999999997 56 57899999999999999999999972 46 89999999999998
Q ss_pred h-hhHHHHhhcCcHHHHHHHHHHHhcCCceEEEEEEecCCccccccccccccceeecCceeeeeeccCCCCCCcccCCCC
Q 003790 436 E-LSEKYQKRFGPLRYFVAGFLKFLCLPKYSYEVEYLPASKEDLEGKQSAEREVVDMSDLYTDIMRKSKNEGMPRASSLS 514 (795)
Q Consensus 436 ~-~sek~Rr~lG~lrY~laal~~L~~~r~y~~~I~~~p~~~~~~~g~~~~~~ek~e~~~~~v~V~Nr~~GgG~~iaP~A~ 514 (795)
. ..++.|+++|+++|++++++.+.++++++++|+++
T Consensus 147 ~~~~~~~k~~~g~~~Y~~~~l~~l~~~~~~~~~i~~d------------------------------------------- 183 (293)
T TIGR00147 147 TETPEKLKAALGSLSYILSGLMRMDTLQPFRCEIRGE------------------------------------------- 183 (293)
T ss_pred hhCCHHHHhccchHHHHHHHHHHHhhCCCeeEEEEEC-------------------------------------------
Confidence 5 45667778999999999999999888888877541
Q ss_pred CcCCCCCCCCCCCCCCCcccCCCCCCCCCcccccCCCcccccccCCCCCCCCCCcccCCCCCCCCCCCCCCCcccccccc
Q 003790 515 SIDSIMTPSRMSGGDPDTTCSSTHASTEPSEYVRGLDPKSKRLSSGRSNVMAEPEVIHPQLPLSTTPNWPRTRSKSRTDK 594 (795)
Q Consensus 515 ~~d~~~t~~~~~DG~Ldvv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~s~~r~~~ 594 (795)
|
T Consensus 184 -------------~------------------------------------------------------------------ 184 (293)
T TIGR00147 184 -------------G------------------------------------------------------------------ 184 (293)
T ss_pred -------------C------------------------------------------------------------------
Confidence 0
Q ss_pred cccccccCCCCCcCCCCCcCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCcccCCCCCCCCCc
Q 003790 595 WTGLTVAHDPSRCSWGNTATNDKEDISSTLSDPGPIWDAEPKWDTEPNWDVENPIELPGPSDDVEAGTKKEGIPRYEENW 674 (795)
Q Consensus 595 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgp~~~l~~~~~~~~lp~~~~~W 674 (795)
T Consensus 185 -------------------------------------------------------------------------------- 184 (293)
T TIGR00147 185 -------------------------------------------------------------------------------- 184 (293)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeccEEEEEEecccccccCCCCccCcCCCCCCCeEEEEEEcCcChHHHHHHHHHhccCCCCCCCceEEEEEEEEEEEe
Q 003790 675 IVKKGQYLGIMICNHACRTVQSAQVVAPRAEYDDNTMDMLLVHGSGRLRLARFFLLLQMGRHLSLPYVEYVKVKSVKIKA 754 (795)
Q Consensus 675 ~~ieG~Fv~v~v~N~~~~~~~~d~~lAP~A~l~DG~LDLvlV~~~sR~~Ll~~l~~~~~G~hl~~P~V~~ikvka~rIep 754 (795)
.+++.+++++.++|+++ .+....++|.|.++||.|||++++..++++++.++..+..|+|...|+|.++++++++|++
T Consensus 185 ~~~~~~~~~~~v~n~~~--~gg~~~~~p~a~~~DG~l~v~~v~~~~~~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~i~~ 262 (293)
T TIGR00147 185 EHWQGEAVVFLVGNGRQ--AGGGQKLAPDASINDGLLDLRIFTNDNLLPALVLTLMSDEGKHTDNPNIIYGKASRIDIQT 262 (293)
T ss_pred eEEEeeEEEEEEeCCcc--cCCCcccCCccccCCCeeEEEEEcCCCHHHHHHHHHHHhcCCCCCCCcEEEEEccEEEEEc
Confidence 11223556777889987 4888999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCceeecCceeecCeeEEEeeeccccccc
Q 003790 755 GKHTHNSCGIDGELFPLNGQVISSLLPEQCRLI 787 (795)
Q Consensus 755 ~~~~~~~i~VDGE~ip~~~~V~~~vlP~~~rli 787 (795)
. .+..+++|||++.. .+++++++|++++++
T Consensus 263 ~--~~~~~~iDGE~~~~-~p~~i~v~p~al~~~ 292 (293)
T TIGR00147 263 P--HKITFNLDGEPLGG-TPFHIEILPAHLRCR 292 (293)
T ss_pred C--CCcEEEeCCCcCCC-CcEEEEEEhhccEEe
Confidence 6 45678999999974 579999999999875
No 12
>PRK13054 lipid kinase; Reviewed
Probab=100.00 E-value=5.1e-43 Score=376.14 Aligned_cols=290 Identities=22% Similarity=0.262 Sum_probs=243.7
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHH
Q 003790 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL 356 (795)
.+++++||+||+++. .+.+. .+.+.|++++++++++.|++++|+.++++++... .+|.||++|||||||||+|+|
T Consensus 2 ~~~~~~~i~N~~~~~---~~~~~-~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~-~~d~vvv~GGDGTl~evv~~l 76 (300)
T PRK13054 2 TFPKSLLILNGKSAG---NEELR-EAVGLLREEGHTLHVRVTWEKGDAARYVEEALAL-GVATVIAGGGDGTINEVATAL 76 (300)
T ss_pred CCceEEEEECCCccc---hHHHH-HHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHc-CCCEEEEECCccHHHHHHHHH
Confidence 468999999999762 24564 4666899999999999999999999999987644 479999999999999999999
Q ss_pred HcCCCcccCCCccEEEeecCCcchhhhhhcCCCCHHHHHHHHHhCceeEEeEEEEEEeecceeEEEEEEEEEeeeccchh
Q 003790 357 LSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLTATDVFAVEWIQTGVIHFGMTVSYYGFVSDVLE 436 (795)
Q Consensus 357 ~~r~d~~~a~~iPLGIIP~GTGNdfArsllGi~dp~~Aa~~IlkG~~~~IDlg~V~~~~~g~~~ffln~~g~GfdAdV~~ 436 (795)
+.++. ..++|||+||+||||+|||++..+.++.+|+..|.+|..+++|++.++. ++||+|++++||+|+|+.
T Consensus 77 ~~~~~---~~~~~lgiiP~GTgNdfar~lgi~~~~~~a~~~i~~g~~~~iDlg~v~~-----~~~f~n~~~~G~~a~v~~ 148 (300)
T PRK13054 77 AQLEG---DARPALGILPLGTANDFATAAGIPLEPDKALKLAIEGRAQPIDLARVND-----RTYFINMATGGFGTRVTT 148 (300)
T ss_pred Hhhcc---CCCCcEEEEeCCcHhHHHHhcCCCCCHHHHHHHHHhCCceEEEEEEEcC-----ceEEEEEeecchhHHHHH
Confidence 86531 1258999999999999999843346899999999999999999999962 238899999999999985
Q ss_pred h-hHHHHhhcCcHHHHHHHHHHHhcCCceEEEEEEecCCccccccccccccceeecCceeeeeeccCCCCCCcccCCCCC
Q 003790 437 L-SEKYQKRFGPLRYFVAGFLKFLCLPKYSYEVEYLPASKEDLEGKQSAEREVVDMSDLYTDIMRKSKNEGMPRASSLSS 515 (795)
Q Consensus 437 ~-sek~Rr~lG~lrY~laal~~L~~~r~y~~~I~~~p~~~~~~~g~~~~~~ek~e~~~~~v~V~Nr~~GgG~~iaP~A~~ 515 (795)
. .+++|+.+|+++|++++++.++++++++++|+.+
T Consensus 149 ~~~~~~k~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d-------------------------------------------- 184 (300)
T PRK13054 149 ETPEKLKAALGGVAYLIHGLMRMDTLKPDRCEIRGP-------------------------------------------- 184 (300)
T ss_pred hhHHHHHhccchHHHHHHHHHHHhhCCCeEEEEEeC--------------------------------------------
Confidence 4 4667778999999999999999998888777531
Q ss_pred cCCCCCCCCCCCCCCCcccCCCCCCCCCcccccCCCcccccccCCCCCCCCCCcccCCCCCCCCCCCCCCCccccccccc
Q 003790 516 IDSIMTPSRMSGGDPDTTCSSTHASTEPSEYVRGLDPKSKRLSSGRSNVMAEPEVIHPQLPLSTTPNWPRTRSKSRTDKW 595 (795)
Q Consensus 516 ~d~~~t~~~~~DG~Ldvv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~s~~r~~~~ 595 (795)
|
T Consensus 185 ------------~------------------------------------------------------------------- 185 (300)
T PRK13054 185 ------------D------------------------------------------------------------------- 185 (300)
T ss_pred ------------C-------------------------------------------------------------------
Confidence 0
Q ss_pred ccccccCCCCCcCCCCCcCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCcccCCCCCCCCCcE
Q 003790 596 TGLTVAHDPSRCSWGNTATNDKEDISSTLSDPGPIWDAEPKWDTEPNWDVENPIELPGPSDDVEAGTKKEGIPRYEENWI 675 (795)
Q Consensus 596 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgp~~~l~~~~~~~~lp~~~~~W~ 675 (795)
.
T Consensus 186 -------------------------------------------------------------------------------~ 186 (300)
T PRK13054 186 -------------------------------------------------------------------------------F 186 (300)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred EEeccEEEEEEecccccccCCCCccCcCCCCCCCeEEEEEEcCcChHHHHHHHHHhccCCCCCCCceEEEEEEEEEEEec
Q 003790 676 VKKGQYLGIMICNHACRTVQSAQVVAPRAEYDDNTMDMLLVHGSGRLRLARFFLLLQMGRHLSLPYVEYVKVKSVKIKAG 755 (795)
Q Consensus 676 ~ieG~Fv~v~v~N~~~~~~~~d~~lAP~A~l~DG~LDLvlV~~~sR~~Ll~~l~~~~~G~hl~~P~V~~ikvka~rIep~ 755 (795)
.+++++.++.++|+++ .|..+.++|.|.++||.|||++++. +..++.+|..+..|.+...|+|.+++++.|+|+..
T Consensus 187 ~~~~~~~~~~v~N~~~--~ggg~~~~p~a~~~DG~ldv~~~~~--~~~~l~~l~~~~~g~~~~~~~v~~~~~~~v~i~~~ 262 (300)
T PRK13054 187 HWQGDALVIGIGNGRQ--AGGGQQLCPEALINDGLLDLRILPA--PQELLPTLLSTLTGGSEDNPNIIRARLPWLEIQAP 262 (300)
T ss_pred EEEeeEEEEEEECCCc--CCCCcccCCCCcCCCCeEEEEEECC--HHHHHHHHHHHHhCCCCCCCcEEEEECCEEEEEcC
Confidence 0124677888999997 4888899999999999999999988 77888888877777776799999999999999985
Q ss_pred CCCCCceeecCceeecCeeEEEeeecccccccc
Q 003790 756 KHTHNSCGIDGELFPLNGQVISSLLPEQCRLIG 788 (795)
Q Consensus 756 ~~~~~~i~VDGE~ip~~~~V~~~vlP~~~rlig 788 (795)
.+..+++|||++. ..+++++++|++++++-
T Consensus 263 --~~~~~~iDGE~~~-~~p~~i~v~p~al~vl~ 292 (300)
T PRK13054 263 --HELTFNLDGEPLS-GRHFRIEVLPAALRCRL 292 (300)
T ss_pred --CCCEEEeCCCcCC-CccEEEEEEcCeeEEEe
Confidence 4677899999997 46899999999999985
No 13
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=100.00 E-value=1.2e-42 Score=372.15 Aligned_cols=284 Identities=24% Similarity=0.306 Sum_probs=237.9
Q ss_pred eEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcC
Q 003790 280 KMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSR 359 (795)
Q Consensus 280 rllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r 359 (795)
++++|+||.+|.. +.|. .+.+.|+++|++++++.|++++||.++++++... .+|.||++|||||||||+|||+.+
T Consensus 1 ~~~~I~N~~~~~~---~~~~-~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~-~~d~vv~~GGDGTi~ev~ngl~~~ 75 (293)
T TIGR03702 1 KALLILNGKQADN---EDVR-EAVGDLRDEGIQLHVRVTWEKGDAQRYVAEALAL-GVSTVIAGGGDGTLREVATALAQI 75 (293)
T ss_pred CEEEEEeCCccch---hHHH-HHHHHHHHCCCeEEEEEecCCCCHHHHHHHHHHc-CCCEEEEEcCChHHHHHHHHHHhh
Confidence 5789999998733 2454 5667899999999999999999999999988654 479999999999999999999876
Q ss_pred CCcccCCCccEEEeecCCcchhhhhhcCC-CCHHHHHHHHHhCceeEEeEEEEEEeecceeEEEEEEEEEeeeccchhh-
Q 003790 360 GNQKEGISIPIGIIPAGSDNSLVWTVLGV-RDPVSAALAIVKGGLTATDVFAVEWIQTGVIHFGMTVSYYGFVSDVLEL- 437 (795)
Q Consensus 360 ~d~~~a~~iPLGIIP~GTGNdfArsllGi-~dp~~Aa~~IlkG~~~~IDlg~V~~~~~g~~~ffln~~g~GfdAdV~~~- 437 (795)
.++ ..+|||+||+||||||||+ +++ .++.+|+..|+.|.++++|++.++ ++ +||+|++++||+|+|+..
T Consensus 76 ~~~---~~~~lgiiP~GTgNdfAr~-l~ip~~~~~a~~~i~~g~~~~iDlg~v~----~~-~~f~n~~~~G~da~v~~~~ 146 (293)
T TIGR03702 76 RDD---AAPALGLLPLGTANDFATA-AGIPLEPAKALKLALNGAAQPIDLARVN----GK-HYFLNMATGGFGTRVTTET 146 (293)
T ss_pred CCC---CCCcEEEEcCCchhHHHHh-cCCCCCHHHHHHHHHhCCceeeeEEEEC----Cc-cEEEEEeecccchHhhhhh
Confidence 422 2479999999999999998 564 789999999999999999999996 22 478999999999999854
Q ss_pred hHHHHhhcCcHHHHHHHHHHHhcCCceEEEEEEecCCccccccccccccceeecCceeeeeeccCCCCCCcccCCCCCcC
Q 003790 438 SEKYQKRFGPLRYFVAGFLKFLCLPKYSYEVEYLPASKEDLEGKQSAEREVVDMSDLYTDIMRKSKNEGMPRASSLSSID 517 (795)
Q Consensus 438 sek~Rr~lG~lrY~laal~~L~~~r~y~~~I~~~p~~~~~~~g~~~~~~ek~e~~~~~v~V~Nr~~GgG~~iaP~A~~~d 517 (795)
.++.|+.+|.++|++++++.+++++.++++|+.+
T Consensus 147 ~~~~k~~~G~~aY~~~~l~~l~~~~~~~~~i~~~---------------------------------------------- 180 (293)
T TIGR03702 147 SEKLKKALGGAAYLITGLTRFSELTAASCEFRGP---------------------------------------------- 180 (293)
T ss_pred hHHHHhccchHHHHHHHHHHHhhCCCeEEEEEEC----------------------------------------------
Confidence 5667777899999999999999888777766431
Q ss_pred CCCCCCCCCCCCCCcccCCCCCCCCCcccccCCCcccccccCCCCCCCCCCcccCCCCCCCCCCCCCCCccccccccccc
Q 003790 518 SIMTPSRMSGGDPDTTCSSTHASTEPSEYVRGLDPKSKRLSSGRSNVMAEPEVIHPQLPLSTTPNWPRTRSKSRTDKWTG 597 (795)
Q Consensus 518 ~~~t~~~~~DG~Ldvv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~s~~r~~~~~~ 597 (795)
+
T Consensus 181 ----------~--------------------------------------------------------------------- 181 (293)
T TIGR03702 181 ----------D--------------------------------------------------------------------- 181 (293)
T ss_pred ----------C---------------------------------------------------------------------
Confidence 0
Q ss_pred ccccCCCCCcCCCCCcCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCcccCCCCCCCCCcEEE
Q 003790 598 LTVAHDPSRCSWGNTATNDKEDISSTLSDPGPIWDAEPKWDTEPNWDVENPIELPGPSDDVEAGTKKEGIPRYEENWIVK 677 (795)
Q Consensus 598 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgp~~~l~~~~~~~~lp~~~~~W~~i 677 (795)
..+
T Consensus 182 -----------------------------------------------------------------------------~~~ 184 (293)
T TIGR03702 182 -----------------------------------------------------------------------------FHW 184 (293)
T ss_pred -----------------------------------------------------------------------------EEE
Confidence 011
Q ss_pred eccEEEEEEecccccccCCCCccCcCCCCCCCeEEEEEEcCcChHHHHHHHHHhccCCCCCCCceEEEEEEEEEEEecCC
Q 003790 678 KGQYLGIMICNHACRTVQSAQVVAPRAEYDDNTMDMLLVHGSGRLRLARFFLLLQMGRHLSLPYVEYVKVKSVKIKAGKH 757 (795)
Q Consensus 678 eG~Fv~v~v~N~~~~~~~~d~~lAP~A~l~DG~LDLvlV~~~sR~~Ll~~l~~~~~G~hl~~P~V~~ikvka~rIep~~~ 757 (795)
+++++++.++|++++ |..+.++|.|.++||.|||++++. ++.++.+|..+..|++ .+++.++++++++|+..
T Consensus 185 ~~~~~~~~v~N~~~~--GGg~~i~P~A~~~DG~Ldv~~v~~--~~~~~~~l~~~~~g~~--~~~~~~~~~~~i~i~~~-- 256 (293)
T TIGR03702 185 EGDFLALGIGNGRQA--GGGQVLCPDALINDGLLDVRILPA--PELLPATLSTLFGGDK--NPEFVRARLPWLEIEAP-- 256 (293)
T ss_pred EeeEEEEEEECCCcC--CCCceeCCCCccCCceEEEEEeCC--HHHHHHHHHHHhcCCC--CCcEEEEEcCEEEEEeC--
Confidence 335678889999984 888999999999999999999977 6788899888888874 47889999999999985
Q ss_pred CCCceeecCceeecCeeEEEeeecccccccc
Q 003790 758 THNSCGIDGELFPLNGQVISSLLPEQCRLIG 788 (795)
Q Consensus 758 ~~~~i~VDGE~ip~~~~V~~~vlP~~~rlig 788 (795)
.+..+++|||.+.. .+++++++|++++++-
T Consensus 257 ~~~~~~vDGE~~~~-~p~~i~v~p~al~v~~ 286 (293)
T TIGR03702 257 QPLTFNLDGEPLSG-RHFRIEVLPGALRCHL 286 (293)
T ss_pred CCcEEEECCCcCCC-ceEEEEEEcCeEEEEc
Confidence 45779999999964 5899999999999986
No 14
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=100.00 E-value=8.7e-42 Score=367.70 Aligned_cols=294 Identities=30% Similarity=0.456 Sum_probs=251.7
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHH
Q 003790 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL 356 (795)
+++++.+|+||.||++++.+.| ..++..|+.+|+++.++.|+..+||.++++++... .+|+||++|||||||||+|||
T Consensus 1 ~~~~~~~i~Np~sG~~~~~~~~-~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~-~~D~via~GGDGTv~evingl 78 (301)
T COG1597 1 RMKKALLIYNPTSGKGKAKKLL-REVEELLEEAGHELSVRVTEEAGDAIEIAREAAVE-GYDTVIAAGGDGTVNEVANGL 78 (301)
T ss_pred CCceEEEEEcccccccchhhHH-HHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhc-CCCEEEEecCcchHHHHHHHH
Confidence 3689999999999999998888 57888999999999999999999999999999765 489999999999999999999
Q ss_pred HcCCCcccCCCccEEEeecCCcchhhhhhcCCCC-HHHHHHHHHhCceeEEeEEEEEEeecceeEEEEEEEEEeeeccch
Q 003790 357 LSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRD-PVSAALAIVKGGLTATDVFAVEWIQTGVIHFGMTVSYYGFVSDVL 435 (795)
Q Consensus 357 ~~r~d~~~a~~iPLGIIP~GTGNdfArsllGi~d-p~~Aa~~IlkG~~~~IDlg~V~~~~~g~~~ffln~~g~GfdAdV~ 435 (795)
++++. .||||||+||+|+|||++..+.+ +..|++.|.+|.++.+|++.++ ++ .||+|++++||+|+++
T Consensus 79 ~~~~~------~~LgilP~GT~NdfAr~Lgip~~~~~~Al~~i~~g~~~~vDlg~~~----~~-~~fin~a~~G~~a~~~ 147 (301)
T COG1597 79 AGTDD------PPLGILPGGTANDFARALGIPLDDIEAALELIKSGETRKVDLGQVN----GR-RYFINNAGIGFDAEVV 147 (301)
T ss_pred hcCCC------CceEEecCCchHHHHHHcCCCchhHHHHHHHHHcCCeEEEeehhcC----Cc-ceEEEEeecchhHHHH
Confidence 99853 23999999999999998444564 8899999999999999999775 32 2889999999999999
Q ss_pred hhhHHHH-hhcCcHHHHHHHHHHHhcCCceEEEEEEecCCccccccccccccceeecCceeeeeeccCCCCCCcccCCCC
Q 003790 436 ELSEKYQ-KRFGPLRYFVAGFLKFLCLPKYSYEVEYLPASKEDLEGKQSAEREVVDMSDLYTDIMRKSKNEGMPRASSLS 514 (795)
Q Consensus 436 ~~sek~R-r~lG~lrY~laal~~L~~~r~y~~~I~~~p~~~~~~~g~~~~~~ek~e~~~~~v~V~Nr~~GgG~~iaP~A~ 514 (795)
...+..+ +.+|.++|++.++..+..+++++++|+|+.
T Consensus 148 ~~~~~~~k~~~g~~~y~~~~~~~l~~~~~~~~~i~~d~------------------------------------------ 185 (301)
T COG1597 148 AAVEEERKKGFGRLAYALAGLAVLARLKPFRIEIEYDG------------------------------------------ 185 (301)
T ss_pred HhhcHHHHhccchHHHHHHHHHhccccCCCcEEEEEcC------------------------------------------
Confidence 8765554 468999999999999999999999998731
Q ss_pred CcCCCCCCCCCCCCCCCcccCCCCCCCCCcccccCCCcccccccCCCCCCCCCCcccCCCCCCCCCCCCCCCcccccccc
Q 003790 515 SIDSIMTPSRMSGGDPDTTCSSTHASTEPSEYVRGLDPKSKRLSSGRSNVMAEPEVIHPQLPLSTTPNWPRTRSKSRTDK 594 (795)
Q Consensus 515 ~~d~~~t~~~~~DG~Ldvv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~s~~r~~~ 594 (795)
T Consensus 186 -------------------------------------------------------------------------------- 185 (301)
T COG1597 186 -------------------------------------------------------------------------------- 185 (301)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCCcCCCCCcCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCcccCCCCCCCCCc
Q 003790 595 WTGLTVAHDPSRCSWGNTATNDKEDISSTLSDPGPIWDAEPKWDTEPNWDVENPIELPGPSDDVEAGTKKEGIPRYEENW 674 (795)
Q Consensus 595 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgp~~~l~~~~~~~~lp~~~~~W 674 (795)
T Consensus 186 -------------------------------------------------------------------------------- 185 (301)
T COG1597 186 -------------------------------------------------------------------------------- 185 (301)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeccEEEEEEecccccccCCCCccCcCCCCCCCeEEEEEEcCcChHHHHHHHHHhccCCCCCCCceEEEEEEEEEEEe
Q 003790 675 IVKKGQYLGIMICNHACRTVQSAQVVAPRAEYDDNTMDMLLVHGSGRLRLARFFLLLQMGRHLSLPYVEYVKVKSVKIKA 754 (795)
Q Consensus 675 ~~ieG~Fv~v~v~N~~~~~~~~d~~lAP~A~l~DG~LDLvlV~~~sR~~Ll~~l~~~~~G~hl~~P~V~~ikvka~rIep 754 (795)
...+++-+++.+.|... .+....++|.|.++||++|+++++..++++++.++..+.+|.|.+.|-|+|.+++.+.|++
T Consensus 186 ~~~~~~~~~~~~~~~~~--~gg~~~~~p~a~~~dG~l~~~i~~~~~~~~~~~l~~~~~~G~~~~~~~v~~~~~~~~~i~~ 263 (301)
T COG1597 186 KTFEGEALALLVFNGNS--YGGGMKLAPDASLDDGLLDVYILKPQSLLELLALLPDLLRGKHLENPDVEYLRAKKLEITS 263 (301)
T ss_pred cEEEEEEEEEEEecCcc--cccccccCCcCCCCCceEEEEEEccccHHHHHHHHHHHhCCCccCCCCeEEEeccEEEEEc
Confidence 00112333333443332 4678899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeecCceeecCeeEEEeeecccccccccc
Q 003790 755 GKHTHNSCGIDGELFPLNGQVISSLLPEQCRLIGRS 790 (795)
Q Consensus 755 ~~~~~~~i~VDGE~ip~~~~V~~~vlP~~~rlig~~ 790 (795)
. .+..+++|||..... +++++++|++++++.-.
T Consensus 264 ~--~~~~~~~DGE~~~~~-p~~i~~~p~al~vl~p~ 296 (301)
T COG1597 264 D--PPIPVNLDGEYLGKT-PVTIEVLPGALRVLVPP 296 (301)
T ss_pred C--CCceEeeCCccCCCC-cEEEEEecccEEEEcCC
Confidence 7 577899999999754 49999999999998754
No 15
>PRK12361 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-37 Score=359.85 Aligned_cols=179 Identities=25% Similarity=0.336 Sum_probs=156.0
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHH
Q 003790 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (795)
Q Consensus 276 ~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNG 355 (795)
...++++||+||+||++++.+.+ +.+++.|++. ++++++.|+..+|+.++++++..+ .+|.||++|||||||||+|+
T Consensus 240 ~~~~~~~iI~NP~SG~g~~~~~~-~~i~~~L~~~-~~~~v~~t~~~~~a~~la~~~~~~-~~d~Viv~GGDGTl~ev~~~ 316 (547)
T PRK12361 240 NIHKRAWLIANPVSGGGKWQEYG-EQIQRELKAY-FDLTVKLTTPEISAEALAKQARKA-GADIVIACGGDGTVTEVASE 316 (547)
T ss_pred ccCCceEEEECCCCCCCcHHHHH-HHHHHHHhcC-CceEEEECCCCccHHHHHHHHHhc-CCCEEEEECCCcHHHHHHHH
Confidence 34688999999999999988777 4778888875 899999999999999999987543 47999999999999999999
Q ss_pred HHcCCCcccCCCccEEEeecCCcchhhhhhcCC----CCHHHHHHHHHhCceeEEeEEEEEEeecceeEEEEEEEEEeee
Q 003790 356 LLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGV----RDPVSAALAIVKGGLTATDVFAVEWIQTGVIHFGMTVSYYGFV 431 (795)
Q Consensus 356 L~~r~d~~~a~~iPLGIIP~GTGNdfArsllGi----~dp~~Aa~~IlkG~~~~IDlg~V~~~~~g~~~ffln~~g~Gfd 431 (795)
|.++ ++||||||+||||||||++.|+ .++.+|+..|.+|..+++|++.++. ++|+|++|+||+
T Consensus 317 l~~~-------~~~lgiiP~GTgNdfAr~L~gi~~~~~~~~~a~~~i~~g~~~~iD~g~vn~------~~fln~agiG~d 383 (547)
T PRK12361 317 LVNT-------DITLGIIPLGTANALSHALFGLGSKLIPVEQACDNIIQGHTQRIDTARCND------RLMLLLVGIGFE 383 (547)
T ss_pred HhcC-------CCCEEEecCCchhHHHHHhcCCCCCCccHHHHHHHHHhCCCeEEEEEEEcC------eEEEEEEeechh
Confidence 9865 5899999999999999985365 3788999999999999999999962 477999999999
Q ss_pred ccchhhhH-HHHhhcCcHHHHHHHHHHHhcCCceEEEEEE
Q 003790 432 SDVLELSE-KYQKRFGPLRYFVAGFLKFLCLPKYSYEVEY 470 (795)
Q Consensus 432 AdV~~~se-k~Rr~lG~lrY~laal~~L~~~r~y~~~I~~ 470 (795)
++|+...+ ..|+.+|.++|++++++.+.+++.++++|++
T Consensus 384 a~v~~~~~~~~k~~~G~laY~~~~~~~l~~~~~~~l~i~~ 423 (547)
T PRK12361 384 QKMIESADRERKNALGQLAYLDGLWRAVNENETLTLTVTL 423 (547)
T ss_pred HHHHHhccHHHHhccCHHHHHHHHHHHhhcCCCeeEEEEE
Confidence 99986543 3455789999999999999999999999876
No 16
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=99.90 E-value=2.8e-23 Score=197.24 Aligned_cols=127 Identities=45% Similarity=0.739 Sum_probs=104.3
Q ss_pred eEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcC
Q 003790 280 KMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSR 359 (795)
Q Consensus 280 rllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r 359 (795)
|++||+||+||++++. | +.+++.|+..+..++++.|+..+++.++++........|.||++|||||||+|+|+|+.+
T Consensus 1 k~~vi~Np~sG~~~~~--~-~~v~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv~~l~~~ 77 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAK--W-KKVEPALRAAGIDYEVIETESAGHAEALARILALDDYPDVIVVVGGDGTLNEVVNGLMGS 77 (130)
T ss_dssp SEEEEEETTSTTSHHH--H-HHHHHHHHHTTCEEEEEEESSTTHHHHHHHHHHHTTS-SEEEEEESHHHHHHHHHHHCTS
T ss_pred CEEEEECCCCCCCchh--H-HHHHHHHHHcCCceEEEEEeccchHHHHHHHHhhccCccEEEEEcCccHHHHHHHHHhhc
Confidence 6899999999999987 5 689999999999999999999999999987444443238999999999999999999987
Q ss_pred CCcccCCCccEEEeecCCcchhhhhhcCCCCHHH-HHHHHHhCceeEEeEEEEE
Q 003790 360 GNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVS-AALAIVKGGLTATDVFAVE 412 (795)
Q Consensus 360 ~d~~~a~~iPLGIIP~GTGNdfArsllGi~dp~~-Aa~~IlkG~~~~IDlg~V~ 412 (795)
.... .+|||+||+||||+||+++....++.. ++..++.+..+++|+++|+
T Consensus 78 ~~~~---~~~l~iiP~GT~N~~ar~lg~~~~~~~~a~~~~~~~~~~~~d~~~v~ 128 (130)
T PF00781_consen 78 DRED---KPPLGIIPAGTGNDFARSLGIPSDPEANAALLIILGRVRKIDVGKVN 128 (130)
T ss_dssp TSSS-----EEEEEE-SSS-HHHHHTT--SSHHH-HHHHHHHSEEEEEEEEEET
T ss_pred CCCc---cceEEEecCCChhHHHHHcCCCCCcHHHHHHHHHhCCCcEeEEEEeC
Confidence 5321 579999999999999998555577777 7888888888899999985
No 17
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=99.76 E-value=1.2e-18 Score=165.10 Aligned_cols=102 Identities=27% Similarity=0.411 Sum_probs=74.6
Q ss_pred EEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC--cchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcC
Q 003790 282 LVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS--AGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSR 359 (795)
Q Consensus 282 lVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~--~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r 359 (795)
+||+||+||++++.+++. .++..+. .+.++.|+. ..++.++++++. .+|.||++|||||+|||+|+|+.+
T Consensus 1 lvi~NP~sG~~~~~~~~~-~~~~~l~----~~~v~~t~~~~~~~~~~~~~~~~---~~d~vvv~GGDGTi~~vvn~l~~~ 72 (124)
T smart00046 1 LVFVNPKSGGGKGVKLLR-KFRLLLN----PAQVFDLTKKGPAAALVIFRDLP---KFDRVLVCGGDGTVGWVLNALDKR 72 (124)
T ss_pred CEEEcCCCCCCccHHHHH-HHHHHcC----CceEEEEecCChHHHHHHHhhcC---cCCEEEEEccccHHHHHHHHHHhc
Confidence 589999999999877664 4555554 344555543 445566655543 378999999999999999999976
Q ss_pred CCcccCCCccEEEeecCCcchhhhhhcCC-CCHHHH
Q 003790 360 GNQKEGISIPIGIIPAGSDNSLVWTVLGV-RDPVSA 394 (795)
Q Consensus 360 ~d~~~a~~iPLGIIP~GTGNdfArsllGi-~dp~~A 394 (795)
..+ ...+|||+||+||||+||++ +|+ .++..+
T Consensus 73 ~~~--~~~~plgiiP~GTgNdfar~-lgi~~~~~~~ 105 (124)
T smart00046 73 ELP--LPEPPVAVLPLGTGNDLARS-LGWGGGYDGE 105 (124)
T ss_pred ccc--cCCCcEEEeCCCChhHHHHH-cCCCCCcccc
Confidence 432 12389999999999999997 654 555443
No 18
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.76 E-value=1.4e-18 Score=187.60 Aligned_cols=185 Identities=35% Similarity=0.555 Sum_probs=148.4
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHH
Q 003790 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL 356 (795)
++||++|++||.+.++.+...|.+..+|+|+.+|++++++.|++.+||+.++..++. . .|+|+|+|||||+.||+.|+
T Consensus 59 ~~Kkv~V~~Np~ank~~~r~~f~kna~P~lHLaG~~V~Ivktd~~gqak~l~e~~~t-~-~Dii~VaGGDGT~~eVVTGi 136 (535)
T KOG4435|consen 59 RPKKVFVLVNPEANKRGCRDQFNKNALPLLHLAGVQVDIVKTDNQGQAKALAEAVDT-Q-EDIIYVAGGDGTIGEVVTGI 136 (535)
T ss_pred ccceEEEEechhhccchhhhhhhcccchheeeccceEEEEecCcHHHHHHHHHHhcc-C-CCeEEEecCCCcHHHhhHHH
Confidence 789999999999999888888888899999999999999999999999999999874 2 59999999999999999999
Q ss_pred HcCCCcccCCCccEEEeecCCcchhhhhhcC-C-------CCHHHHHHHHHhCce---eEEeEEEEEEeecceeEEEEEE
Q 003790 357 LSRGNQKEGISIPIGIIPAGSDNSLVWTVLG-V-------RDPVSAALAIVKGGL---TATDVFAVEWIQTGVIHFGMTV 425 (795)
Q Consensus 357 ~~r~d~~~a~~iPLGIIP~GTGNdfArsllG-i-------~dp~~Aa~~IlkG~~---~~IDlg~V~~~~~g~~~ffln~ 425 (795)
+.|.. ...|++++|+|--|.-..+.+. + +...+|+.+++++.. .++||..-. ..-+..|.++.
T Consensus 137 ~Rrr~----~~~pv~~~P~G~~~l~~~s~l~~vfe~~d~V~h~~~a~~avikde~ksv~~fdv~~~g--s~l~P~fgl~g 210 (535)
T KOG4435|consen 137 FRRRK----AQLPVGFYPGGYDNLWLKSMLPSVFENSDDVRHACEAAMAVIKDEKKSVYAFDVTTEG--STLAPEFGLGG 210 (535)
T ss_pred Hhccc----ccCceeeccCccchHhhhhhchhhhccchHHHHHHHHHHHHhcccccceEEEEeccCC--CccccccccCc
Confidence 98742 3689999999999876655332 1 235678999999987 566765411 11235688899
Q ss_pred EEEeeeccchhhhHHHHhhcCcHHHHHHHHHHHhcCC--ceEEEEEE
Q 003790 426 SYYGFVSDVLELSEKYQKRFGPLRYFVAGFLKFLCLP--KYSYEVEY 470 (795)
Q Consensus 426 ~g~GfdAdV~~~sek~Rr~lG~lrY~laal~~L~~~r--~y~~~I~~ 470 (795)
++||.+-|+.....+|. +||+++-..+.+..+++.- +.++.++|
T Consensus 211 lswG~frdi~~~~~KyW-Yfgplk~~aA~f~s~lk~wpak~e~vv~y 256 (535)
T KOG4435|consen 211 LSWGWFRDIEDTRKKYW-YFGPLKRRAAYFWSMLKRWPAKIECVVEY 256 (535)
T ss_pred cchhhhhhhhhhhhhee-eecHHHHHHHHHHHHHhcCCCceeEEecc
Confidence 99999999988888885 8999876667777776522 44555555
No 19
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.75 E-value=8.7e-18 Score=192.53 Aligned_cols=241 Identities=17% Similarity=0.180 Sum_probs=162.9
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHH
Q 003790 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL 356 (795)
.-..++||+||+||+.++..+. ..++.+|.... -+++-.+..+..+..+.+++. ...|+|||||||+-+|++.+
T Consensus 270 ~~~PLlVfvNpKSGg~~G~~ll-~~f~~lLnp~Q-Vfdl~~~~~p~~gL~l~~~~~----~~riLVcGGDGTvGWVL~~i 343 (634)
T KOG1169|consen 270 DWRPLLVFVNPKSGGQQGERLL-RRFRYLLNPVQ-VFDLLKRGGPRPGLTLFRDVP----DFRILVCGGDGTVGWVLGCI 343 (634)
T ss_pred CCcceEEEEecCCcccccHHHH-HHHHHhcChhh-EEecccCCCCchhHHHHHhCC----cceEEEecCCCcchhhhhhH
Confidence 3466999999999999997765 45665655332 122222223455566666652 35899999999999999999
Q ss_pred HcCCCcccCCCccEEEeecCCcchhhhhhc-C--C-C-C--HHHHHHHHHhCceeEEeEEEEEEeec-c-----------
Q 003790 357 LSRGNQKEGISIPIGIIPAGSDNSLVWTVL-G--V-R-D--PVSAALAIVKGGLTATDVFAVEWIQT-G----------- 417 (795)
Q Consensus 357 ~~r~d~~~a~~iPLGIIP~GTGNdfArsll-G--i-~-d--p~~Aa~~IlkG~~~~IDlg~V~~~~~-g----------- 417 (795)
-.-..+.....+|+||+|+||||||+|.+. | . . + +..++..|..+.+.++|-+.|..... +
T Consensus 344 ~~~n~~~~~~~PpVAilPLGTGNDLsR~l~WGgg~~g~~~~~~~iL~~i~~a~v~~lDrW~v~v~~~~~~~~~~~~~~~~ 423 (634)
T KOG1169|consen 344 DKLNKQNAIPPPPVAILPLGTGNDLSRVLRWGGGYPGEDRNLIKILKDIEEAPVTKLDRWKVLVEPQSGELVQYSLKPPE 423 (634)
T ss_pred HHhhccccCCCCCeEEEecCCCCchHhhcCCCCCCCcchhhHHHHHHhhhhccceecceeeEEeeccccccccccccCCC
Confidence 764333333468999999999999999742 1 1 2 2 77888899999999999999875322 0
Q ss_pred -----eeEEEEEEEEEeeeccchhhhHHHH---------hhcCcHHHHHHHHHHHhcCC----ceEEEEEEecCCccccc
Q 003790 418 -----VIHFGMTVSYYGFVSDVLELSEKYQ---------KRFGPLRYFVAGFLKFLCLP----KYSYEVEYLPASKEDLE 479 (795)
Q Consensus 418 -----~~~ffln~~g~GfdAdV~~~sek~R---------r~lG~lrY~laal~~L~~~r----~y~~~I~~~p~~~~~~~ 479 (795)
...++.|.+++|+||.|+.....+| +.+.++.|+-.+....+..+ ..+.+|+...
T Consensus 424 ~~~~~~~~imnNYFSIGvDA~Ia~~FH~~Re~~PekF~Sr~~NKl~Yf~~G~q~~f~~~ck~~~~~i~i~~~~------- 496 (634)
T KOG1169|consen 424 KGDPVPYGIMNNYFSIGVDAQIAYGFHNMREKNPEKFNSRMKNKLWYFEFGTQETFAARCKNLHLHIKIELDG------- 496 (634)
T ss_pred cCCCCCeeeEeeeeeecccHHHHHHHHHHhhhChHhhcchhhceeeeeeecchhhHHHhhcCCccceEEEEcc-------
Confidence 1235779999999999986554333 34578888877744443322 2444444321
Q ss_pred cccccccceeecC-ce-eeeeec-cCCCCCCcccCCCCCcCCCC---CCCCCCCCCCCcccC
Q 003790 480 GKQSAEREVVDMS-DL-YTDIMR-KSKNEGMPRASSLSSIDSIM---TPSRMSGGDPDTTCS 535 (795)
Q Consensus 480 g~~~~~~ek~e~~-~~-~v~V~N-r~~GgG~~iaP~A~~~d~~~---t~~~~~DG~Ldvv~~ 535 (795)
..+.++.+ ++ -+++.| .+||||-.+.-......+.. ++.-.+||.+.+++.
T Consensus 497 -----d~~dl~~p~sleGIv~LNIpS~ggG~nlWg~~~~~~~~~~~~~~~d~~dgliEvvgv 553 (634)
T KOG1169|consen 497 -----DGEDLELPKSLEGIVVLNIPSWGGGSNLWGNSNKSKGNFRGFSEADDDDGLIEVVGV 553 (634)
T ss_pred -----cceEccCCCCceeEEEEcccccccCcccccccCccccccccccccCCCcCeEEEEEe
Confidence 22344455 34 577889 99999999888766555444 454455688887763
No 20
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=99.60 E-value=4.2e-15 Score=165.45 Aligned_cols=239 Identities=20% Similarity=0.219 Sum_probs=153.1
Q ss_pred cCCCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHH
Q 003790 274 RCKSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVL 353 (795)
Q Consensus 274 ~~~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVv 353 (795)
....++.++||+||+||+.++.++++ .+-=+|.-+. -+++ ....+..|.|+-+++. .-.|++|||||||.+|+
T Consensus 361 sSplmkPLLVFVNPKSGGNqGsK~lq-~f~WyLNPRQ-VFDl-sq~GPK~aLEmyRKV~----nLRILaCGGDGTVGWiL 433 (1004)
T KOG0782|consen 361 SSPLMKPLLVFVNPKSGGNQGSKALQ-TFCWYLNPRQ-VFDL-SQLGPKFALEMYRKVV----NLRILACGGDGTVGWIL 433 (1004)
T ss_pred CCCCCCceEEEecCCCCCcchHHHHH-HHHHhcChhh-heeh-hccCcHHHHHHHHhcc----ceEEEEecCCCceeehh
Confidence 34566889999999999999987664 2322333221 1222 2346677888888763 24799999999999999
Q ss_pred HHHHcCCCcccCCCccEEEeecCCcchhhhhhc--C-C-CCHH-HHHHHHHhCceeEEeEEEEEEeec----------ce
Q 003790 354 NGLLSRGNQKEGISIPIGIIPAGSDNSLVWTVL--G-V-RDPV-SAALAIVKGGLTATDVFAVEWIQT----------GV 418 (795)
Q Consensus 354 NGL~~r~d~~~a~~iPLGIIP~GTGNdfArsll--G-i-~dp~-~Aa~~IlkG~~~~IDlg~V~~~~~----------g~ 418 (795)
.-|-+-.- ...+|+||+|+||||||||++. | . .+|+ ..+.++..|.+..+|-+.++...+ |-
T Consensus 434 StLD~L~l---~p~PPvailPLGTGNDLARtlnWGGgytDEPvSkil~~ve~gtvVqLDRW~lhvEpNp~~~pEe~ddG~ 510 (1004)
T KOG0782|consen 434 STLDNLNL---PPYPPVAILPLGTGNDLARTLNWGGGYTDEPVSKILQAVEHGTVVQLDRWRLHVEPNPSCNPEEEDDGM 510 (1004)
T ss_pred hhhhhcCC---CCCCCeeEeecCCcchHHHhcccCCCcCcchHHHHHHHHhcCcEEeeeeeeecccCCCCCChhhhcccc
Confidence 99865421 2358999999999999999843 1 2 3455 456678899999999998875221 11
Q ss_pred -----eEEEEEEEEEeeeccchhhh--------HHHH-hhcCcHHHHHHHHHHHhc--CC--ceEEEEEEecCCcccccc
Q 003790 419 -----IHFGMTVSYYGFVSDVLELS--------EKYQ-KRFGPLRYFVAGFLKFLC--LP--KYSYEVEYLPASKEDLEG 480 (795)
Q Consensus 419 -----~~ffln~~g~GfdAdV~~~s--------ek~R-r~lG~lrY~laal~~L~~--~r--~y~~~I~~~p~~~~~~~g 480 (795)
...|.|.+++||||.|.-+. +++. ++..++.|.-.++..|+. .+ .-+++|.-++.+-..
T Consensus 511 ~~~LPL~VfnNYFSlGfDAHVtLeFHeSReANPekfNSRfrNkmfYaG~afsDfl~rSskDL~khi~vvCDG~DlTP--- 587 (1004)
T KOG0782|consen 511 QSALPLTVFNNYFSLGFDAHVTLEFHESREANPEKFNSRFRNKMFYAGLAFSDFLKRSSKDLCKHITVVCDGVDLTP--- 587 (1004)
T ss_pred hhccchhHhhccccccccceEEEEeccccccCHHHHHHHHhhhhhhcchhHHHHHhhhhHHhhhheEEEecCccCCh---
Confidence 12467889999999997432 3332 233566666666666553 11 223455554433221
Q ss_pred ccccccceeecCceeeeeec--cCCCCCCcccCCCCCcCC-CCCCCCCCCCCCCccc
Q 003790 481 KQSAEREVVDMSDLYTDIMR--KSKNEGMPRASSLSSIDS-IMTPSRMSGGDPDTTC 534 (795)
Q Consensus 481 ~~~~~~ek~e~~~~~v~V~N--r~~GgG~~iaP~A~~~d~-~~t~~~~~DG~Ldvv~ 534 (795)
...+++-..+.+.| +|.+|-||..- |.|- -+.|.|-+||.++|+-
T Consensus 588 ------kIqeLK~qCivFlNIprYcaGTmPWG~---pgdhhDfePqrhdDGyvEViG 635 (1004)
T KOG0782|consen 588 ------KIQELKLQCIVFLNIPRYCAGTMPWGE---PGDHHDFEPQRHDDGYVEVIG 635 (1004)
T ss_pred ------hhhhcccceEEEecchhhhcCccCCCC---CCccccCCccccCCceEEEEe
Confidence 11233334667788 66666666542 2222 2578888999998553
No 21
>smart00045 DAGKa Diacylglycerol kinase accessory domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain might either be an accessory domain or else contribute to the catalytic domain. Bacterial homologues are known.
Probab=99.31 E-value=4e-12 Score=125.51 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=46.8
Q ss_pred CcCCCCCCCeEEEEEEcCcChHHHHHHHHHhccCCCCCCCceEEEEEEEEEEEecCCCCCceeecCce
Q 003790 701 APRAEYDDNTMDMLLVHGSGRLRLARFFLLLQMGRHLSLPYVEYVKVKSVKIKAGKHTHNSCGIDGEL 768 (795)
Q Consensus 701 AP~A~l~DG~LDLvlV~~~sR~~Ll~~l~~~~~G~hl~~P~V~~ikvka~rIep~~~~~~~i~VDGE~ 768 (795)
.|.|+++||.||++++++.+++.++. |...|.+.+.++++++|+-....+.++++|||.
T Consensus 102 ~p~a~~~DG~ldv~~~~~~~~~~~~~---------~~~~~~v~~~~~~~v~i~i~~~~~~~~q~DGE~ 160 (160)
T smart00045 102 FSKQSHDDGLLEVVGLTGAMHMAQIR---------QVGLAGRRIAQCSEVRITIKTSKTIPMQVDGEP 160 (160)
T ss_pred cCCCCCCCceEEEEEEcCchhhhhhh---------hccCCCceeecCceEEEEEecCCceeeecCCCC
Confidence 46699999999999999988776442 567889999999999955322256778999994
No 22
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.80 E-value=4.5e-08 Score=105.39 Aligned_cols=112 Identities=18% Similarity=0.198 Sum_probs=80.4
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE--eCCcchHHHHHH-HhhhcCCCCCeEEEcCchHHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK--TTSAGHAKNLAS-TVDISSCPDGIICVGGDGIINEVLNG 355 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~--T~~~ghA~ela~-~l~~~~~~D~IVvvGGDGTlnEVvNG 355 (795)
+|+.|+.|+.. ..+.+.+ +++...|++.|+++.+.. ++..+++...+. .+.. ..+|.||++|||||+.++++
T Consensus 1 m~v~iv~~~~k--~~~~~~~-~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~iGGDGTlL~a~~- 75 (277)
T PRK03708 1 MRFGIVARRDK--EEALKLA-YRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEE-MDVDFIIAIGGDGTILRIEH- 75 (277)
T ss_pred CEEEEEecCCC--HHHHHHH-HHHHHHHHHCCCEEEEecchhhhcCcccccccccccc-cCCCEEEEEeCcHHHHHHHH-
Confidence 57889988844 4565666 578889999999887752 322232222221 2221 24799999999999999999
Q ss_pred HHcCCCcccCCCccEEEeecCCcchhhhhhcCCCCHHHHHHHHHhCcee
Q 003790 356 LLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLT 404 (795)
Q Consensus 356 L~~r~d~~~a~~iPLGIIP~GTGNdfArsllGi~dp~~Aa~~IlkG~~~ 404 (795)
+... ++|+..||+|+. +|... +.+.+...++..+.+|...
T Consensus 76 ~~~~-------~~pi~gIn~G~l-GFl~~-~~~~~~~~~l~~i~~g~~~ 115 (277)
T PRK03708 76 KTKK-------DIPILGINMGTL-GFLTE-VEPEETFFALSRLLEGDYF 115 (277)
T ss_pred hcCC-------CCeEEEEeCCCC-Ccccc-CCHHHHHHHHHHHHcCCce
Confidence 7654 589999999999 77765 4566778899999999743
No 23
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.66 E-value=2.5e-07 Score=100.99 Aligned_cols=115 Identities=16% Similarity=0.171 Sum_probs=80.8
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHH
Q 003790 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL 356 (795)
++++++||+|| |+..+.+.+ ..+...|+++|+++.+..+....++.+..... ....+|.||++|||||+.++++.+
T Consensus 2 ~~kkv~lI~n~--~~~~~~~~~-~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~-~~~~~d~vi~~GGDGT~l~~~~~~ 77 (305)
T PRK02645 2 QLKQVIIAYKA--GSSQAKEAA-ERCAKQLEARGCKVLMGPSGPKDNPYPVFLAS-ASELIDLAIVLGGDGTVLAAARHL 77 (305)
T ss_pred CcCEEEEEEeC--CCHHHHHHH-HHHHHHHHHCCCEEEEecCchhhccccchhhc-cccCcCEEEEECCcHHHHHHHHHh
Confidence 46789999999 555665655 46777889999998777665443322211111 122479999999999999999998
Q ss_pred HcCCCcccCCCccEEEeec-CCcchhhhhhcC-CCCHHHHHHHHHhCcee
Q 003790 357 LSRGNQKEGISIPIGIIPA-GSDNSLVWTVLG-VRDPVSAALAIVKGGLT 404 (795)
Q Consensus 357 ~~r~d~~~a~~iPLGIIP~-GTGNdfArsllG-i~dp~~Aa~~IlkG~~~ 404 (795)
... ++|++.|.+ |+-.-|+. ... ..+ .+++..+++|...
T Consensus 78 ~~~-------~~pv~gin~~G~lGFL~~-~~~~~~~-~~~l~~i~~g~~~ 118 (305)
T PRK02645 78 APH-------DIPILSVNVGGHLGFLTH-PRDLLQD-ESVWDRLQEDRYA 118 (305)
T ss_pred ccC-------CCCEEEEecCCcceEecC-chhhcch-HHHHHHHHcCCce
Confidence 644 589999998 78666663 221 223 6788999999754
No 24
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=98.21 E-value=5.7e-06 Score=90.39 Aligned_cols=74 Identities=28% Similarity=0.316 Sum_probs=54.9
Q ss_pred CCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeecCCcchhhhhhcCCCCHHHHHHHH
Q 003790 319 TSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAI 398 (795)
Q Consensus 319 ~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArsllGi~dp~~Aa~~I 398 (795)
+.+.+.+.+++++... +.|.|+.+|||||...|++++ .. ++|+--||+||-|-+.=-.+.+.+....+..+
T Consensus 84 tTa~DT~~~~r~~~~~-gVdlIvfaGGDGTarDVa~av--~~------~vPvLGipaGvk~~SgvfA~~P~~aa~l~~~~ 154 (355)
T COG3199 84 TTAEDTINAVRRMVER-GVDLIVFAGGDGTARDVAEAV--GA------DVPVLGIPAGVKNYSGVFALSPEDAARLLGAF 154 (355)
T ss_pred ccHHHHHHHHHHHHhc-CceEEEEeCCCccHHHHHhhc--cC------CCceEeeccccceeccccccChHHHHHHHHHH
Confidence 3456777788888653 589999999999999999998 22 69999999999998741113334444455667
Q ss_pred HhC
Q 003790 399 VKG 401 (795)
Q Consensus 399 lkG 401 (795)
++|
T Consensus 155 lkg 157 (355)
T COG3199 155 LKG 157 (355)
T ss_pred hcc
Confidence 788
No 25
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.12 E-value=3.6e-05 Score=83.85 Aligned_cols=114 Identities=18% Similarity=0.186 Sum_probs=76.0
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC---cchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003790 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS---AGHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~---~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
++++.||+||... .+.+.+ +.+...|++.++++.+..+.. ..++.......+....+|.||++|||||+.++++
T Consensus 4 ~~~v~iv~~~~k~--~a~e~~-~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt~l~~~~ 80 (295)
T PRK01231 4 FRNIGLIGRLGSS--SVVETL-RRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGDGSLLGAAR 80 (295)
T ss_pred CCEEEEEecCCCH--HHHHHH-HHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCcHHHHHHHH
Confidence 5679999998764 454555 467778999999987765432 1111111111112234799999999999999999
Q ss_pred HHHcCCCcccCCCccEEEeecCCcchhhhhhcCCCCHHHHHHHHHhCce
Q 003790 355 GLLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGL 403 (795)
Q Consensus 355 GL~~r~d~~~a~~iPLGIIP~GTGNdfArsllGi~dp~~Aa~~IlkG~~ 403 (795)
.+... ++|+--|.+|+-.-|+ . ..+.+...++..+++|..
T Consensus 81 ~~~~~-------~~Pvlgin~G~lGFl~-~-~~~~~~~~~l~~~~~g~~ 120 (295)
T PRK01231 81 ALARH-------NVPVLGINRGRLGFLT-D-IRPDELEFKLAEVLDGHY 120 (295)
T ss_pred HhcCC-------CCCEEEEeCCcccccc-c-CCHHHHHHHHHHHHcCCc
Confidence 88543 5788778888754333 1 334566788999999864
No 26
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.97 E-value=2.7e-05 Score=84.78 Aligned_cols=111 Identities=17% Similarity=0.230 Sum_probs=75.3
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcch-HH-----HHHHHhhhcCCCCCeEEEcCchHHH
Q 003790 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGH-AK-----NLASTVDISSCPDGIICVGGDGIIN 350 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~gh-A~-----ela~~l~~~~~~D~IVvvGGDGTln 350 (795)
.++++.||.||.. ..+.+.. +.+...|++.|+++.+........ .. ++ .++ ...+|.||++|||||+.
T Consensus 4 ~~~~i~iv~~~~~--~~~~~~~-~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~-~~~--~~~~d~vi~lGGDGT~L 77 (292)
T PRK03378 4 HFKCIGIVGHPRH--PTALTTH-EMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTL-AEI--GQQADLAIVVGGDGNML 77 (292)
T ss_pred cCCEEEEEEeCCC--HHHHHHH-HHHHHHHHHCCCEEEEecchhhhcCcccccccch-hhc--CCCCCEEEEECCcHHHH
Confidence 4678999999855 4454555 467778989998775542111000 00 00 111 12369999999999999
Q ss_pred HHHHHHHcCCCcccCCCccEEEeecCCcc-hhhhhhcCCCCHHHHHHHHHhCce
Q 003790 351 EVLNGLLSRGNQKEGISIPIGIIPAGSDN-SLVWTVLGVRDPVSAALAIVKGGL 403 (795)
Q Consensus 351 EVvNGL~~r~d~~~a~~iPLGIIP~GTGN-dfArsllGi~dp~~Aa~~IlkG~~ 403 (795)
.+++.+... . +.||+.++|| +|... +.+.+...++..+++|..
T Consensus 78 ~aa~~~~~~-------~--~Pilgin~G~lGFl~~-~~~~~~~~~l~~i~~g~~ 121 (292)
T PRK03378 78 GAARVLARY-------D--IKVIGINRGNLGFLTD-LDPDNALQQLSDVLEGHY 121 (292)
T ss_pred HHHHHhcCC-------C--CeEEEEECCCCCcccc-cCHHHHHHHHHHHHcCCc
Confidence 999988543 2 4578888888 78765 556677889999999874
No 27
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.66 E-value=0.00059 Score=74.83 Aligned_cols=114 Identities=14% Similarity=0.163 Sum_probs=77.1
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchH---HHH-----------HHHhhhcCCCCCeEE
Q 003790 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHA---KNL-----------ASTVDISSCPDGIIC 342 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA---~el-----------a~~l~~~~~~D~IVv 342 (795)
+++++.||.|+.. ..+.+.. +.+...|++.|+++.+......... ..+ ...+ .+..|.||+
T Consensus 4 ~~~~I~iv~~~~~--~~~~~~~-~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~D~vi~ 78 (306)
T PRK03372 4 ASRRVLLVAHTGR--DEATEAA-RRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDA--ADGCELVLV 78 (306)
T ss_pred CccEEEEEecCCC--HHHHHHH-HHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhc--ccCCCEEEE
Confidence 6788999999854 4454555 5677789999988766542211000 000 0111 124699999
Q ss_pred EcCchHHHHHHHHHHcCCCcccCCCccEEEeecCCcchhhhhhcCCCCHHHHHHHHHhCcee
Q 003790 343 VGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLT 404 (795)
Q Consensus 343 vGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArsllGi~dp~~Aa~~IlkG~~~ 404 (795)
+|||||+-.++..+... .+|+--|.+|+-.-|+. ..+.+..+++..+++|...
T Consensus 79 lGGDGT~L~aar~~~~~-------~~PilGIN~G~lGFL~~--~~~~~~~~~l~~i~~g~y~ 131 (306)
T PRK03372 79 LGGDGTILRAAELARAA-------DVPVLGVNLGHVGFLAE--AEAEDLDEAVERVVDRDYR 131 (306)
T ss_pred EcCCHHHHHHHHHhccC-------CCcEEEEecCCCceecc--CCHHHHHHHHHHHHcCCce
Confidence 99999999999987654 57888899998755553 3345667899999999753
No 28
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=97.62 E-value=1.8e-05 Score=92.98 Aligned_cols=123 Identities=18% Similarity=0.294 Sum_probs=76.9
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHc
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLS 358 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~ 358 (795)
..++|++|-++|..++.++. ++.+.+|.-..+ +++ .-..+.-+..+-..++ .=.|+||||||++..|+..+..
T Consensus 195 spllv~insksgd~qg~~~l-rkfkq~lnp~qV-fdl-l~~gp~~gL~~f~~~d----~friLvcggdGsv~wvls~~ds 267 (1099)
T KOG1170|consen 195 SPLLVFINSKSGDSQGQRFL-RKFKQILNPIQV-FDL-IAGGPDFGLTFFSHFE----SFRILVCGGDGSVGWVLSAIDR 267 (1099)
T ss_pred CceeEeecccCCCchhHHHH-HhhhhhcCHHHH-HHH-HccCcchhhhhhhccc----ceEEEEecCCCCCcchHHHHHh
Confidence 55999999999999987654 344444332111 011 1122222222222221 1279999999999999988754
Q ss_pred CCCcccCCCccEEEeecCCcchhhhhhcCCCC-------HHHHHHHHHhCceeEEeEEEEE
Q 003790 359 RGNQKEGISIPIGIIPAGSDNSLVWTVLGVRD-------PVSAALAIVKGGLTATDVFAVE 412 (795)
Q Consensus 359 r~d~~~a~~iPLGIIP~GTGNdfArsllGi~d-------p~~Aa~~IlkG~~~~IDlg~V~ 412 (795)
-.- ..+.-++++|+||||++||. +|-.+ ....+....+..++.+|-+.|-
T Consensus 268 ~~l---h~kcql~vlplgtgndlarv-lgwg~a~~ddt~~p~il~~~eRastkmldrwsvm 324 (1099)
T KOG1170|consen 268 LNL---HSKCQLAVLPLGTGNDLARV-LGWGHAFYDDTLLPQILRTMERASTKMLDRWSVM 324 (1099)
T ss_pred ccc---hhhcccccccCCChHHHHHH-hcccccCchhhccHHHHHHHHhhhhhhhhcchhh
Confidence 321 13578999999999999995 76531 1245555566777777766653
No 29
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=97.53 E-value=0.00041 Score=75.54 Aligned_cols=113 Identities=14% Similarity=0.188 Sum_probs=73.7
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc-hHHH---HH-HHhhhcCCCCCeEEEcCchHHHHH
Q 003790 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKN---LA-STVDISSCPDGIICVGGDGIINEV 352 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g-hA~e---la-~~l~~~~~~D~IVvvGGDGTlnEV 352 (795)
++++.||.|+.. ..+.+.+ +.+...|+..|+++.+....... ++.+ +. .++ ...+|.||++|||||+.++
T Consensus 5 ~~~v~iv~~~~~--~~~~e~~-~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~--~~~~d~vi~~GGDGt~l~~ 79 (291)
T PRK02155 5 FKTVALIGRYQT--PGIAEPL-ESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEI--GARADLAVVLGGDGTMLGI 79 (291)
T ss_pred CCEEEEEecCCC--HHHHHHH-HHHHHHHHHCCCEEEEecchhhhcCcccccccChhHh--ccCCCEEEEECCcHHHHHH
Confidence 567999999855 3455555 46777888899886654332110 1000 01 222 1247999999999999999
Q ss_pred HHHHHcCCCcccCCCccEEEeecCCcchhhhhhcCCCCHHHHHHHHHhCcee
Q 003790 353 LNGLLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLT 404 (795)
Q Consensus 353 vNGL~~r~d~~~a~~iPLGIIP~GTGNdfArsllGi~dp~~Aa~~IlkG~~~ 404 (795)
++.+... ++|+-=|.+|+-.-|+. .-+.+..+++..+++|..+
T Consensus 80 ~~~~~~~-------~~pilGIn~G~lGFL~~--~~~~~~~~~l~~~~~g~~~ 122 (291)
T PRK02155 80 GRQLAPY-------GVPLIGINHGRLGFITD--IPLDDMQETLPPMLAGNYE 122 (291)
T ss_pred HHHhcCC-------CCCEEEEcCCCcccccc--CCHHHHHHHHHHHHcCCce
Confidence 9998654 47776678887544441 2335567788899998753
No 30
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=97.49 E-value=0.00011 Score=79.41 Aligned_cols=113 Identities=21% Similarity=0.202 Sum_probs=72.5
Q ss_pred eEEEEEcCCCCCCCchhhHHHhHHHHHHHc-CCeEEEEEeCCcc----------------------hHHHHHHHhhhcCC
Q 003790 280 KMLVILNPRSGRGRSSKVFHDIVEPIFKLA-GFKLEVVKTTSAG----------------------HAKNLASTVDISSC 336 (795)
Q Consensus 280 rllVIvNP~SG~Gka~ki~~~~I~plL~~a-Gi~~~v~~T~~~g----------------------hA~ela~~l~~~~~ 336 (795)
|+.||.||.. ..+.+.+ ..+...|.+. ++.+.+...-... +......+.. ...
T Consensus 1 kVgii~np~~--~~~~~~~-~~~~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 76 (285)
T PF01513_consen 1 KVGIIANPNK--PEAIELA-NELARWLLEKQGIEVLVEGSIAEDILEAIKKRYEVISVEKKLKTLDDTRNALEEML-EEG 76 (285)
T ss_dssp -EEEEESSCG--HCCCHHH-HHHHHHHHHTTTEEEEEEHHHHHSHCCCSHSCCCCCTTSHCCCCTCEEEECCHHHH-CCC
T ss_pred CEEEEEcCCC--HHHHHHH-HHHHHHHHhCCCEEEEEChHHHHHHHHhccccccccccccccccccccchhhhhhc-ccC
Confidence 5889999983 3444555 4677788887 5443322110000 0000111221 245
Q ss_pred CCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeecCCcchhhhhhcCCCCHHHHHHHHHhCceeE
Q 003790 337 PDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLTA 405 (795)
Q Consensus 337 ~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArsllGi~dp~~Aa~~IlkG~~~~ 405 (795)
+|.||++|||||+-.++..+... .+|+--|+.||-+-|+. ..+.+...++..+++|....
T Consensus 77 ~D~ii~lGGDGT~L~~~~~~~~~-------~~Pilgin~G~lgfl~~--~~~~~~~~~l~~~~~g~~~~ 136 (285)
T PF01513_consen 77 VDLIIVLGGDGTFLRAARLFGDY-------DIPILGINTGTLGFLTE--FEPEDIEEALEKILAGEYSI 136 (285)
T ss_dssp SSEEEEEESHHHHHHHHHHCTTS-------T-EEEEEESSSSTSSSS--EEGCGHHHHHHHHHHTHCEE
T ss_pred CCEEEEECCCHHHHHHHHHhccC-------CCcEEeecCCCcccccc--CCHHHHHHHHHHHhcCCeEE
Confidence 89999999999999999998653 58999999999665552 45677888899999987543
No 31
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.46 E-value=0.0015 Score=71.09 Aligned_cols=112 Identities=18% Similarity=0.165 Sum_probs=72.8
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc--chH-HHHHHHhhhcCCCCCeEEEcCchHHHHH
Q 003790 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA--GHA-KNLASTVDISSCPDGIICVGGDGIINEV 352 (795)
Q Consensus 276 ~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~--ghA-~ela~~l~~~~~~D~IVvvGGDGTlnEV 352 (795)
..++++.||.||. + .+.+.. +.+...|++.|+++.+...... +.. ..+ .++ .+.+|.||++|||||+-.+
T Consensus 8 ~~~~~i~ii~~~~--~-~~~~~~-~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~--~~~~Dlvi~iGGDGT~L~a 80 (287)
T PRK14077 8 KNIKKIGLVTRPN--V-SLDKEI-LKLQKILSIYKVEILLEKESAEILDLPGYGL-DEL--FKISDFLISLGGDGTLISL 80 (287)
T ss_pred ccCCEEEEEeCCc--H-HHHHHH-HHHHHHHHHCCCEEEEecchhhhhcccccch-hhc--ccCCCEEEEECCCHHHHHH
Confidence 3578899999996 3 555555 5777889889988765432110 000 000 111 1236999999999999999
Q ss_pred HHHHHcCCCcccCCCccEEEeecCCcchhhhhhcCCCCHHHHHHHHHhCce
Q 003790 353 LNGLLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGL 403 (795)
Q Consensus 353 vNGL~~r~d~~~a~~iPLGIIP~GTGNdfArsllGi~dp~~Aa~~IlkG~~ 403 (795)
+.-+... .+|+--|-+|+-.=|+. ..+.+...++..+++|..
T Consensus 81 a~~~~~~-------~~PilGIN~G~lGFLt~--~~~~~~~~~l~~i~~g~y 122 (287)
T PRK14077 81 CRKAAEY-------DKFVLGIHAGHLGFLTD--ITVDEAEKFFQAFFQGEF 122 (287)
T ss_pred HHHhcCC-------CCcEEEEeCCCcccCCc--CCHHHHHHHHHHHHcCCC
Confidence 8887544 47766677776433331 233456678889999863
No 32
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=97.39 E-value=0.00016 Score=71.92 Aligned_cols=103 Identities=14% Similarity=0.083 Sum_probs=71.1
Q ss_pred EEEEEEEeeeccchhhhHHHH---------hhcCcHHHHHHHHHHHhcCCceE--EEEEEecCCccccccccccccceee
Q 003790 422 GMTVSYYGFVSDVLELSEKYQ---------KRFGPLRYFVAGFLKFLCLPKYS--YEVEYLPASKEDLEGKQSAEREVVD 490 (795)
Q Consensus 422 fln~~g~GfdAdV~~~sek~R---------r~lG~lrY~laal~~L~~~r~y~--~~I~~~p~~~~~~~g~~~~~~ek~e 490 (795)
|.|.+|+|+||.|+....+.| +.++++.|...+++.++..+... -.|++. ..+++++
T Consensus 2 ~~NYfsiG~DA~ia~~Fh~~R~~~P~~f~sr~~NK~~Y~~~g~k~~~~~~~~~~~~~i~l~------------~dg~~~~ 69 (161)
T PF00609_consen 2 MNNYFSIGVDAQIALGFHHSREKNPEKFNSRLLNKLWYAFFGFKALFQRSCKNLPKKIELE------------VDGKEVD 69 (161)
T ss_pred eEecccccHhhHHHHHHhhccccChhhhccHHHHHHHHHHHHHHHHHhchhcCchhhcccc------------cCCeeEe
Confidence 568899999999997665544 35689999999999998422221 122221 1234455
Q ss_pred cC-ce-eeeeec-cCCCCCCcccCCCCCcCC--CCCCCCCCCCCCCcccCC
Q 003790 491 MS-DL-YTDIMR-KSKNEGMPRASSLSSIDS--IMTPSRMSGGDPDTTCSS 536 (795)
Q Consensus 491 ~~-~~-~v~V~N-r~~GgG~~iaP~A~~~d~--~~t~~~~~DG~Ldvv~~~ 536 (795)
++ .. .+++.| ++|+||..+++....... .+.+..++||.|++++..
T Consensus 70 lp~~~~~iv~lNIpSy~gG~~~W~~~~~~~~~~~~~~~~~~Dg~lEVvg~~ 120 (161)
T PF00609_consen 70 LPSSLESIVFLNIPSYGGGVDLWGNSKPDRSKLKFKKQSMDDGKLEVVGFR 120 (161)
T ss_pred eecceeEEEEEccccccCCcccccCCcccccccccccccccCceEEEEEEc
Confidence 66 44 677889 999999988877664332 356677899999988743
No 33
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.32 E-value=0.0023 Score=70.29 Aligned_cols=112 Identities=20% Similarity=0.225 Sum_probs=72.1
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc--chHH--------H----HHHHhhhcCCCCCeEEE
Q 003790 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA--GHAK--------N----LASTVDISSCPDGIICV 343 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~--ghA~--------e----la~~l~~~~~~D~IVvv 343 (795)
++++.||+|+.. ..+.++. ..+...|++.|+++.+...... +... + -...+ ....|.||++
T Consensus 1 m~~igiv~n~~~--~~~~~~~-~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Dlvi~i 75 (305)
T PRK02649 1 MPKAGIIYNDGK--PLAVRTA-EELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGF--DSSMKFAIVL 75 (305)
T ss_pred CCEEEEEEcCCC--HHHHHHH-HHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhc--ccCcCEEEEE
Confidence 357999999843 4455555 4677789999988765432110 0000 0 00111 1236999999
Q ss_pred cCchHHHHHHHHHHcCCCcccCCCccEEEeecCCcchhhhhhcCCCCHHHHHHHHHhCce
Q 003790 344 GGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGL 403 (795)
Q Consensus 344 GGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArsllGi~dp~~Aa~~IlkG~~ 403 (795)
|||||+-.++.-+... ++|+--|-+|+=.=|+. ..+.+..+++..+++|..
T Consensus 76 GGDGTlL~aar~~~~~-------~iPilGIN~G~lGFLt~--~~~~~~~~~l~~l~~g~y 126 (305)
T PRK02649 76 GGDGTVLSAARQLAPC-------GIPLLTINTGHLGFLTE--AYLNQLDEAIDQVLAGQY 126 (305)
T ss_pred eCcHHHHHHHHHhcCC-------CCcEEEEeCCCCccccc--CCHHHHHHHHHHHHcCCc
Confidence 9999999999987654 57777777886444442 234566788999999874
No 34
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.21 E-value=0.0022 Score=70.07 Aligned_cols=113 Identities=17% Similarity=0.203 Sum_probs=73.7
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc----------chHHHHHHHhhhcCCCCCeEEEcCc
Q 003790 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA----------GHAKNLASTVDISSCPDGIICVGGD 346 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~----------ghA~ela~~l~~~~~~D~IVvvGGD 346 (795)
.++++.||.||.. ..+.+.+ +.+...|++.|+++.+...... +....-...+ .+..|.||++|||
T Consensus 4 ~~~~i~ii~~~~~--~~~~~~~-~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~D~vi~lGGD 78 (296)
T PRK04539 4 PFHNIGIVTRPNT--PDIQDTA-HTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTEL--GQYCDLVAVLGGD 78 (296)
T ss_pred CCCEEEEEecCCC--HHHHHHH-HHHHHHHHHCCCEEEEecccccccchhccccccccccchhhc--CcCCCEEEEECCc
Confidence 4678999999855 4455555 5677789999988766432111 1000000122 2246999999999
Q ss_pred hHHHHHHHHHHcCCCcccCCCccEEEeecCCcchhhhhhcCCCCHHHHHHHHHhCce
Q 003790 347 GIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGL 403 (795)
Q Consensus 347 GTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArsllGi~dp~~Aa~~IlkG~~ 403 (795)
||+-.++..+... .+|+-=|-+|+-.-|+. ..+.+...++..+++|..
T Consensus 79 GT~L~aa~~~~~~-------~~PilGIN~G~lGFL~~--~~~~~~~~~l~~i~~g~~ 126 (296)
T PRK04539 79 GTFLSVAREIAPR-------AVPIIGINQGHLGFLTQ--IPREYMTDKLLPVLEGKY 126 (296)
T ss_pred HHHHHHHHHhccc-------CCCEEEEecCCCeEeec--cCHHHHHHHHHHHHcCCc
Confidence 9999999887654 57877788887444442 233456678889999864
No 35
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.20 E-value=0.0043 Score=67.77 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=70.7
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc-hH--------HHH--HHHhhhcCCCCCeEEEcCch
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HA--------KNL--ASTVDISSCPDGIICVGGDG 347 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g-hA--------~el--a~~l~~~~~~D~IVvvGGDG 347 (795)
|++.||+||.. ..+.++. +.+...|++.|+++.+....... .. ... ...+ .+.+|.||++||||
T Consensus 1 m~igii~~~~~--~~~~~~~-~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~dlvi~lGGDG 75 (292)
T PRK01911 1 MKIAIFGQTYQ--ESASPYI-QELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEEL--DGSADMVISIGGDG 75 (292)
T ss_pred CEEEEEeCCCC--HHHHHHH-HHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhc--ccCCCEEEEECCcH
Confidence 46889999844 4454555 56777898999887654321100 00 000 0122 12369999999999
Q ss_pred HHHHHHHHHHcCCCcccCCCccEEEeecCCcchhhhhhcCCCCHHHHHHHHHhCce
Q 003790 348 IINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGL 403 (795)
Q Consensus 348 TlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArsllGi~dp~~Aa~~IlkG~~ 403 (795)
|+-.++..+... ++|+--|-+|+=.=|+. ..+.+...++..+++|..
T Consensus 76 T~L~aa~~~~~~-------~~PilGIN~G~lGFLt~--~~~~~~~~~l~~i~~g~~ 122 (292)
T PRK01911 76 TFLRTATYVGNS-------NIPILGINTGRLGFLAT--VSKEEIEETIDELLNGDY 122 (292)
T ss_pred HHHHHHHHhcCC-------CCCEEEEecCCCCcccc--cCHHHHHHHHHHHHcCCc
Confidence 999999887654 57876678887433331 233456778899999974
No 36
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.09 E-value=0.0074 Score=65.07 Aligned_cols=96 Identities=15% Similarity=0.110 Sum_probs=65.5
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHc
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLS 358 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~ 358 (795)
+++.+++|+.. .+.++. +.++..|++.|+++.+. . +..|.||++|||||+-.++..+..
T Consensus 3 ~~i~iv~~~~~---~a~~~~-~~l~~~l~~~g~~~~~~--------------~---~~~D~vi~lGGDGT~L~a~~~~~~ 61 (264)
T PRK03501 3 RNLFFFYKRDK---ELVEKV-KPLKKIAEEYGFTVVDH--------------P---KNANIIVSIGGDGTFLQAVRKTGF 61 (264)
T ss_pred cEEEEEECCCH---HHHHHH-HHHHHHHHHCCCEEEcC--------------C---CCccEEEEECCcHHHHHHHHHhcc
Confidence 36888888766 455555 56788899999876421 1 136999999999999999888654
Q ss_pred CCCcccCCCccEEEeec-CCcchhhhhhcCCCCHHHHHHHHHhCce
Q 003790 359 RGNQKEGISIPIGIIPA-GSDNSLVWTVLGVRDPVSAALAIVKGGL 403 (795)
Q Consensus 359 r~d~~~a~~iPLGIIP~-GTGNdfArsllGi~dp~~Aa~~IlkG~~ 403 (795)
.+ .+|+--|.+ |+-.=|+- ....+..+++..+++|..
T Consensus 62 ~~------~~pilgIn~~G~lGFL~~--~~~~~~~~~l~~i~~g~~ 99 (264)
T PRK03501 62 RE------DCLYAGISTKDQLGFYCD--FHIDDLDKMIQAITKEEI 99 (264)
T ss_pred cC------CCeEEeEecCCCCeEccc--CCHHHHHHHHHHHHcCCc
Confidence 32 367544566 65444432 333566778889999874
No 37
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.89 E-value=0.01 Score=64.07 Aligned_cols=96 Identities=21% Similarity=0.203 Sum_probs=66.5
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHc
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLS 358 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~ 358 (795)
|++.|+.|+ +.++.++. +.++..|+..|+++. . +.+|.||++|||||+-.++..+..
T Consensus 1 M~i~Ii~~~---~~~~~~~~-~~l~~~l~~~g~~~~------------------~-~~~Dlvi~iGGDGT~L~a~~~~~~ 57 (265)
T PRK04885 1 MKVAIISNG---DPKSKRVA-SKLKKYLKDFGFILD------------------E-KNPDIVISVGGDGTLLSAFHRYEN 57 (265)
T ss_pred CEEEEEeCC---CHHHHHHH-HHHHHHHHHcCCccC------------------C-cCCCEEEEECCcHHHHHHHHHhcc
Confidence 357888883 34555555 577888888887631 0 136999999999999999988765
Q ss_pred CCCcccCCCccEEEeecCCcchhhhhhcCCCCHHHHHHHHHhCcee
Q 003790 359 RGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLT 404 (795)
Q Consensus 359 r~d~~~a~~iPLGIIP~GTGNdfArsllGi~dp~~Aa~~IlkG~~~ 404 (795)
.. .++|+--|.+|+-.=|+ . ..+.+..+++..+++|...
T Consensus 58 ~~-----~~iPilGIN~G~lGFL~-~-~~~~~~~~~l~~i~~g~y~ 96 (265)
T PRK04885 58 QL-----DKVRFVGVHTGHLGFYT-D-WRPFEVDKLVIALAKDPGQ 96 (265)
T ss_pred cC-----CCCeEEEEeCCCceecc-c-CCHHHHHHHHHHHHcCCce
Confidence 21 15787778888744444 2 3345667889999998743
No 38
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.79 E-value=0.011 Score=70.28 Aligned_cols=115 Identities=21% Similarity=0.210 Sum_probs=75.1
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHH-HHH---H-hhhcCCCCCeEEEcCchHHH
Q 003790 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKN-LAS---T-VDISSCPDGIICVGGDGIIN 350 (795)
Q Consensus 276 ~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~e-la~---~-l~~~~~~D~IVvvGGDGTln 350 (795)
.+|+++.||.||.. ..+.+.. ..+...|++.|+++.+...... ...+ +.. . .+.. ..|.||++|||||+-
T Consensus 288 ~~~~~i~iv~~~~~--~~~~~~~-~~i~~~l~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~-~~dlvi~lGGDGT~L 362 (569)
T PRK14076 288 IKPTKFGIVSRIDN--EEAINLA-LKIIKYLDSKGIPYELESFLYN-KLKNRLNEECNLIDDIE-EISHIISIGGDGTVL 362 (569)
T ss_pred cCCcEEEEEcCCCC--HHHHHHH-HHHHHHHHHCCCEEEEechhhh-hhccccccccccccccc-CCCEEEEECCcHHHH
Confidence 37889999999853 4454555 4677788888887755431110 0000 000 0 0111 369999999999999
Q ss_pred HHHHHHHcCCCcccCCCccEEEeecCCcchhhhhhcCCCCHHHHHHHHHhCcee
Q 003790 351 EVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLT 404 (795)
Q Consensus 351 EVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArsllGi~dp~~Aa~~IlkG~~~ 404 (795)
.++.-+... .+||--|-+|+-.=|+. ..+.+..+++..+++|...
T Consensus 363 ~aa~~~~~~-------~~PilGin~G~lGFL~~--~~~~~~~~~l~~~~~g~~~ 407 (569)
T PRK14076 363 RASKLVNGE-------EIPIICINMGTVGFLTE--FSKEEIFKAIDSIISGEYE 407 (569)
T ss_pred HHHHHhcCC-------CCCEEEEcCCCCCcCcc--cCHHHHHHHHHHHHcCCce
Confidence 999877543 57877788888555552 3445677889999999743
No 39
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=96.59 E-value=0.013 Score=67.96 Aligned_cols=115 Identities=18% Similarity=0.220 Sum_probs=70.5
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHH-HcCCeEEEEEeCCcch-H----HHHH------HHhh-hcCCCCCeEEE
Q 003790 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFK-LAGFKLEVVKTTSAGH-A----KNLA------STVD-ISSCPDGIICV 343 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~-~aGi~~~v~~T~~~gh-A----~ela------~~l~-~~~~~D~IVvv 343 (795)
.|++++||.||.. ..+.++. ..+...|+ ..|+++.+.......- . .... ..+. ....+|.||++
T Consensus 193 ~p~~VgIV~n~~k--~~a~el~-~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIsi 269 (508)
T PLN02935 193 DPQTVLIITKPNS--TSVRVLC-AEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVITL 269 (508)
T ss_pred CCCEEEEEecCCC--HHHHHHH-HHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEEE
Confidence 6899999999855 3444555 45666777 4777765532110000 0 0000 1100 11237999999
Q ss_pred cCchHHHHHHHHHHcCCCcccCCCccEEEeecCCcchhhhhhcCCCCHHHHHHHHHhCce
Q 003790 344 GGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGL 403 (795)
Q Consensus 344 GGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArsllGi~dp~~Aa~~IlkG~~ 403 (795)
|||||+-.++.-+... .+||--|.+|+=-=|+ . ..+.+...++..|++|..
T Consensus 270 GGDGTlL~Aar~~~~~-------~iPILGIN~G~LGFLt-~-i~~~e~~~~Le~il~G~y 320 (508)
T PLN02935 270 GGDGTVLWAASMFKGP-------VPPVVPFSMGSLGFMT-P-FHSEQYRDCLDAILKGPI 320 (508)
T ss_pred CCcHHHHHHHHHhccC-------CCcEEEEeCCCcceec-c-cCHHHHHHHHHHHHcCCc
Confidence 9999999999887543 4677667777633332 1 334566788999999874
No 40
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.55 E-value=0.042 Score=58.99 Aligned_cols=97 Identities=15% Similarity=0.125 Sum_probs=62.3
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHc
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLS 358 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~ 358 (795)
|++.|+.+|. +.+.+ +.+...|.++|+.+.+.... . . .....|.||++|||||+-.++..+
T Consensus 1 m~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~~~~~~~--~-------~--~~~~~d~vi~iGGDGT~L~a~~~~-- 61 (256)
T PRK14075 1 MKLGIFYREE-----KEKEA-KFLKEKISKEHEVVEFCEAS--A-------S--GKVTADLIIVVGGDGTVLKAAKKV-- 61 (256)
T ss_pred CEEEEEeCcc-----HHHHH-HHHHHHHHHcCCeeEeeccc--c-------c--ccCCCCEEEEECCcHHHHHHHHHc--
Confidence 4677776665 33444 46777888888765433211 1 1 112369999999999999988876
Q ss_pred CCCcccCCCccEEEeecCCcchhhhhhcCCCCHHHHHHHHHhCcee
Q 003790 359 RGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLT 404 (795)
Q Consensus 359 r~d~~~a~~iPLGIIP~GTGNdfArsllGi~dp~~Aa~~IlkG~~~ 404 (795)
++|+--|-+|+-.-|+. ..+.+..+++..+.+|...
T Consensus 62 --------~~Pilgin~G~lGfl~~--~~~~~~~~~l~~~~~g~~~ 97 (256)
T PRK14075 62 --------GTPLVGFKAGRLGFLSS--YTLEEIDRFLEDLKNWNFR 97 (256)
T ss_pred --------CCCEEEEeCCCCccccc--cCHHHHHHHHHHHHcCCcE
Confidence 25765677776444432 2234556788888888743
No 41
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.06 E-value=0.059 Score=58.43 Aligned_cols=106 Identities=21% Similarity=0.268 Sum_probs=62.2
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHH-HhhhcCCCCCeEEEcCchHHHHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLAS-TVDISSCPDGIICVGGDGIINEVLNGLL 357 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~-~l~~~~~~D~IVvvGGDGTlnEVvNGL~ 357 (795)
||+.|++||.. ..+.++. +++...| ..|+++.+.. .......... .... ...|.||++|||||+-.++..+
T Consensus 1 m~i~iv~~~~~--~~~~~~~-~~i~~~l-~~g~~~~~~~--~~~~~~~~~~~~~~~-~~~D~vi~lGGDGT~L~a~~~~- 72 (271)
T PRK01185 1 MKVAFVIRKDC--KRCIKIA-KSIIELL-PPDWEIIYEM--EAAKALGMDGLDIEE-INADVIITIGGDGTILRTLQRA- 72 (271)
T ss_pred CEEEEEecCCC--HHHHHHH-HHHHHHH-hcCCEEEEec--hhhhhcCcccCcccc-cCCCEEEEEcCcHHHHHHHHHc-
Confidence 46889999754 3444544 4566666 4677654432 1110000000 0011 1369999999999998877653
Q ss_pred cCCCcccCCCccEEEeecCCcchhhhhhcCCCCHHHHHHHHHhCce
Q 003790 358 SRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGL 403 (795)
Q Consensus 358 ~r~d~~~a~~iPLGIIP~GTGNdfArsllGi~dp~~Aa~~IlkG~~ 403 (795)
..|+--|-+|+=.-|+ . ..+.+...++..+++|..
T Consensus 73 ---------~~PilGIN~G~lGFL~-~-~~~~~~~~~l~~i~~g~~ 107 (271)
T PRK01185 73 ---------KGPILGINMGGLGFLT-E-IEIDEVGSAIKKLIRGEY 107 (271)
T ss_pred ---------CCCEEEEECCCCccCc-c-cCHHHHHHHHHHHHcCCc
Confidence 1365556778754444 2 334566788899999864
No 42
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.90 E-value=0.11 Score=56.08 Aligned_cols=100 Identities=15% Similarity=0.112 Sum_probs=60.3
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHc
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLS 358 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~ 358 (795)
||+.+|.||.. ++.++. ++++..++..++ .. +.+|.||++|||||+-.++.-+..
T Consensus 1 ~~~~i~~~~~~---~s~~~~-~~l~~~~~~~~~--------------------~~-~~~D~vi~iGGDGT~L~a~~~~~~ 55 (259)
T PRK00561 1 MKYKIFASTTP---QTEPVL-PKLKKVLKKKLA--------------------VE-DGADYLFVLGGDGFFVSTAANYNC 55 (259)
T ss_pred CEEEEEeCCCH---HHHHHH-HHHHHHHhhCCC--------------------cc-CCCCEEEEECCcHHHHHHHHHhcC
Confidence 46888888765 343332 456666654332 01 236999999999999999887754
Q ss_pred CCCcccCCCccEEEeecCCcchhhhhhcCCCCHHH-HHHHHHhCceeEEeEEEEE
Q 003790 359 RGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVS-AALAIVKGGLTATDVFAVE 412 (795)
Q Consensus 359 r~d~~~a~~iPLGIIP~GTGNdfArsllGi~dp~~-Aa~~IlkG~~~~IDlg~V~ 412 (795)
. ++|+--|-+|+-.=|+- ..+.+... ++..+.+.......+.++.
T Consensus 56 ~-------~iPilGIN~G~lGFL~~--~~~~~~~~~~~~~l~~~~~~~r~~L~~~ 101 (259)
T PRK00561 56 A-------GCKVVGINTGHLGFYTS--FNETDLDQNFANKLDQLKFTQIDLLEVQ 101 (259)
T ss_pred C-------CCcEEEEecCCCccccc--cCHHHHHHHHHHHHhhCCeEEEEEEEEE
Confidence 3 57877788886443431 22334445 4455555544444444444
No 43
>PLN02929 NADH kinase
Probab=95.70 E-value=0.089 Score=57.84 Aligned_cols=92 Identities=22% Similarity=0.259 Sum_probs=58.3
Q ss_pred HhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeecCCc-
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSD- 378 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTG- 378 (795)
+.+...|+++|+++..+. +.+ + ++.. .+.|.||++|||||+-.++..+ .. .+|+-=|-.|..
T Consensus 37 ~~~~~~L~~~gi~~~~v~--r~~----~-~~~~--~~~Dlvi~lGGDGT~L~aa~~~-~~-------~iPvlGIN~Gp~~ 99 (301)
T PLN02929 37 NFCKDILQQKSVDWECVL--RNE----L-SQPI--RDVDLVVAVGGDGTLLQASHFL-DD-------SIPVLGVNSDPTQ 99 (301)
T ss_pred HHHHHHHHHcCCEEEEee--ccc----c-cccc--CCCCEEEEECCcHHHHHHHHHc-CC-------CCcEEEEECCCcc
Confidence 567789999999874443 211 2 2211 2479999999999999998877 43 467655666741
Q ss_pred --------chhh--hhhcC------CCCHHHHHHHHHhCceeEEeEE
Q 003790 379 --------NSLV--WTVLG------VRDPVSAALAIVKGGLTATDVF 409 (795)
Q Consensus 379 --------NdfA--rsllG------i~dp~~Aa~~IlkG~~~~IDlg 409 (795)
|.|- ++ +| +.+..+++..+++|....-...
T Consensus 100 ~~~~~~~~~~~~~~r~-lGfL~~~~~~~~~~~L~~il~g~~~~~~r~ 145 (301)
T PLN02929 100 KDEVEEYSDEFDARRS-TGHLCAATAEDFEQVLDDVLFGRLKPTELS 145 (301)
T ss_pred cccccccccccccccC-ccccccCCHHHHHHHHHHHHcCCceEEEee
Confidence 2221 11 22 2456678899999975543333
No 44
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=95.53 E-value=0.044 Score=54.59 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=57.3
Q ss_pred CcEEE--eccEEEEEEecccccccCCCCcc----------CcCCCCCCCeEEEEEEcCcChHHHHHHHHHhccCCCCCCC
Q 003790 673 NWIVK--KGQYLGIMICNHACRTVQSAQVV----------APRAEYDDNTMDMLLVHGSGRLRLARFFLLLQMGRHLSLP 740 (795)
Q Consensus 673 ~W~~i--eG~Fv~v~v~N~~~~~~~~d~~l----------AP~A~l~DG~LDLvlV~~~sR~~Ll~~l~~~~~G~hl~~P 740 (795)
+|+.+ ...-.++.+.|+++|.-|.++.- .....++||.|+||.+.+. +.+......+.. +
T Consensus 64 dg~~~~lp~~~~~iv~lNIpSy~gG~~~W~~~~~~~~~~~~~~~~~~Dg~lEVvg~~~~--~hl~~~~~g~~~------~ 135 (161)
T PF00609_consen 64 DGKEVDLPSSLESIVFLNIPSYGGGVDLWGNSKPDRSKLKFKKQSMDDGKLEVVGFRGS--FHLGQIQAGLSS------A 135 (161)
T ss_pred CCeeEeeecceeEEEEEccccccCCcccccCCcccccccccccccccCceEEEEEEcCc--hhhhhhhhccCC------c
Confidence 44444 44567788889999744433321 1247789999999999865 333333333322 2
Q ss_pred ceEEEEEEEEEEEecCCCCCceeecCce
Q 003790 741 YVEYVKVKSVKIKAGKHTHNSCGIDGEL 768 (795)
Q Consensus 741 ~V~~ikvka~rIep~~~~~~~i~VDGE~ 768 (795)
+....++.++|+-.. ..-+++||||.
T Consensus 136 -~rl~Q~~~i~i~~~~-~~~~~QvDGEp 161 (161)
T PF00609_consen 136 -KRLAQGRPIRIETKE-NKVPFQVDGEP 161 (161)
T ss_pred -eEeecCCEEEEEECC-CceeEEeCCCC
Confidence 577888999999873 26789999994
No 45
>PLN02727 NAD kinase
Probab=95.43 E-value=0.054 Score=66.60 Aligned_cols=113 Identities=17% Similarity=0.172 Sum_probs=70.2
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHc-CCeEEEEEeCCcchHH-HH-----H-----HH-hhhcCCCCCeEE
Q 003790 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLA-GFKLEVVKTTSAGHAK-NL-----A-----ST-VDISSCPDGIIC 342 (795)
Q Consensus 276 ~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~a-Gi~~~v~~T~~~ghA~-el-----a-----~~-l~~~~~~D~IVv 342 (795)
.++++++||.++.. .+...+ ..|...|... |+++-+. ....+.. .+ . .. -+.....|.||+
T Consensus 676 ~p~rtVgIV~K~~~---ea~~~~-~eL~~~L~~~~gi~V~VE--~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVIv 749 (986)
T PLN02727 676 STPKTVLLLKKLGQ---ELMEEA-KEVASFLYHQEKMNVLVE--PDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVAC 749 (986)
T ss_pred CCCCEEEEEcCCcH---HHHHHH-HHHHHHHHhCCCeEEEEe--cchHHHhhccccccccceecccchhhcccCCCEEEE
Confidence 47899999999976 344545 3566778776 7665332 2211110 00 0 00 011123699999
Q ss_pred EcCchHHHHHHHHHHcCCCcccCCCccEEEeecCCcchhhhhhcCCCCHHHHHHHHHhCce
Q 003790 343 VGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGL 403 (795)
Q Consensus 343 vGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArsllGi~dp~~Aa~~IlkG~~ 403 (795)
+||||||-.++.-+... .+||--|-+|+--=|+- ..+.+...++..|++|..
T Consensus 750 LGGDGTlLrAar~~~~~-------~iPILGINlGrLGFLTd--i~~ee~~~~L~~Il~G~y 801 (986)
T PLN02727 750 LGGDGVILHASNLFRGA-------VPPVVSFNLGSLGFLTS--HYFEDFRQDLRQVIHGNN 801 (986)
T ss_pred ECCcHHHHHHHHHhcCC-------CCCEEEEeCCCcccccc--CCHHHHHHHHHHHHcCCc
Confidence 99999999999887543 57877788887433331 223345678888888874
No 46
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.91 E-value=0.24 Score=53.87 Aligned_cols=91 Identities=20% Similarity=0.212 Sum_probs=55.1
Q ss_pred hHHHHHHHcCCeEEEEEeCCc--chHH----HHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEee
Q 003790 301 IVEPIFKLAGFKLEVVKTTSA--GHAK----NLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 301 ~I~plL~~aGi~~~v~~T~~~--ghA~----ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP 374 (795)
.+...|++.|+++.+...... ++.. .+ .++. ..+|.||++|||||+-.++..+... ++|+--|-
T Consensus 4 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~-~~~~--~~~d~vi~iGGDGT~L~aa~~~~~~-------~~PilgIn 73 (272)
T PRK02231 4 NLFHWLKERGYQVLVEKEIAEQLNLPENHLASL-EEIG--QRAQLAIVIGGDGNMLGRARVLAKY-------DIPLIGIN 73 (272)
T ss_pred HHHHHHHHCCCEEEEecchhhhcCccccccCCh-HHhC--cCCCEEEEECCcHHHHHHHHHhccC-------CCcEEEEe
Confidence 466678889987765432110 1000 01 1221 2369999999999999998887543 47766678
Q ss_pred cCCcchhhhhhcCCCCHHHHHHHHHh-Cce
Q 003790 375 AGSDNSLVWTVLGVRDPVSAALAIVK-GGL 403 (795)
Q Consensus 375 ~GTGNdfArsllGi~dp~~Aa~~Ilk-G~~ 403 (795)
+|+-.-|+. ..+.+..+++..+++ |..
T Consensus 74 ~G~lGFL~~--~~~~~~~~~l~~~~~~g~~ 101 (272)
T PRK02231 74 RGNLGFLTD--IDPKNAYEQLEACLERGEF 101 (272)
T ss_pred CCCCccccc--CCHHHHHHHHHHHHhcCCc
Confidence 887444442 223344567777777 753
No 47
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=91.87 E-value=0.96 Score=48.55 Aligned_cols=35 Identities=29% Similarity=0.505 Sum_probs=28.7
Q ss_pred CCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeecCCc
Q 003790 337 PDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSD 378 (795)
Q Consensus 337 ~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTG 378 (795)
+|.||++|||||+-.++..+... .+|+--|-+|+-
T Consensus 26 ~Dlvi~iGGDGTlL~a~~~~~~~-------~~PvlGIN~G~l 60 (246)
T PRK04761 26 ADVIVALGGDGFMLQTLHRYMNS-------GKPVYGMNRGSV 60 (246)
T ss_pred CCEEEEECCCHHHHHHHHHhcCC-------CCeEEEEeCCCC
Confidence 69999999999999999987654 477666777764
No 48
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=90.24 E-value=2.9 Score=45.54 Aligned_cols=111 Identities=22% Similarity=0.237 Sum_probs=61.1
Q ss_pred eEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHH--HHHhhhcCCCCCeEEEcCchHHHHHHHHHH
Q 003790 280 KMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNL--ASTVDISSCPDGIICVGGDGIINEVLNGLL 357 (795)
Q Consensus 280 rllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~el--a~~l~~~~~~D~IVvvGGDGTlnEVvNGL~ 357 (795)
++.++.++..-. +.... ..+...+...+....+... -....... ....+. +.+|.|++.|||||+-.+++.+.
T Consensus 2 ~~~i~~~~~~~~--~~~~~-~~~~~~l~~~~~~~~~~~~-~~~~l~~~~~~~~~~~-~~~d~ivvlGGDGtlL~~~~~~~ 76 (281)
T COG0061 2 KVGIVGRPDKPE--ALKIA-KRLYEFLKFKGVTVEVDQE-LAEELKDFADYVDDDE-EKADLIVVLGGDGTLLRAARLLA 76 (281)
T ss_pred eEEEEecCCcHH--HHHHH-HHHHHHHHhcCceEEEech-hhhhcccccccccccc-cCceEEEEeCCcHHHHHHHHHhc
Confidence 455666655443 33333 3555566666655443321 11111100 011111 34799999999999999999886
Q ss_pred cCCCcccCCCccEEEeecCCcchhhhhhcCCCCHHHHHHHHHhCcee
Q 003790 358 SRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGLT 404 (795)
Q Consensus 358 ~r~d~~~a~~iPLGIIP~GTGNdfArsllGi~dp~~Aa~~IlkG~~~ 404 (795)
.. .+|+-=|-.|+- +|-.. .-..+...++..+++|..+
T Consensus 77 ~~-------~~pilgin~G~l-GFLt~-~~~~~~~~~~~~~~~~~~~ 114 (281)
T COG0061 77 RL-------DIPVLGINLGHL-GFLTD-FEPDELEKALDALLEGEYR 114 (281)
T ss_pred cC-------CCCEEEEeCCCc-ccccc-cCHHHHHHHHHHHhcCceE
Confidence 54 367666666642 22111 1234556778888887654
No 49
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=90.17 E-value=0.24 Score=54.48 Aligned_cols=94 Identities=21% Similarity=0.327 Sum_probs=64.0
Q ss_pred HHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEE--eec
Q 003790 298 FHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGI--IPA 375 (795)
Q Consensus 298 ~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGI--IP~ 375 (795)
+.+.+...|..+|++..++.-. .+.+.+ .+.|.||-+|||||+-..+..+.... .+-||| =|.
T Consensus 76 ~~~~~~~~l~k~giesklv~R~------~lsq~i---~waD~VisvGGDGTfL~Aasrv~~~~------~PViGvNtDP~ 140 (395)
T KOG4180|consen 76 AIKFCQEELSKAGIESKLVSRN------DLSQPI---RWADMVISVGGDGTFLLAASRVIDDS------KPVIGVNTDPT 140 (395)
T ss_pred HHHHHHHHHhhCCcceeeeehh------hccCcC---chhhEEEEecCccceeehhhhhhccC------CceeeecCCCC
Confidence 4456778999999987665422 233443 25799999999999988888776542 345666 377
Q ss_pred CCcchhhhhhcCCCCHHHHHHHHHhCceeEE
Q 003790 376 GSDNSLVWTVLGVRDPVSAALAIVKGGLTAT 406 (795)
Q Consensus 376 GTGNdfArsllGi~dp~~Aa~~IlkG~~~~I 406 (795)
|+---++-.---..++..|+..+..|..+.+
T Consensus 141 ~Seg~lcL~~~~~~n~~~al~k~~sgnF~wv 171 (395)
T KOG4180|consen 141 GSEGHLCLPDKYPSNPAGALCKLTSGNFEWV 171 (395)
T ss_pred cCcceEeccccCCCCcHHHHHHHHhccHHHh
Confidence 7766665221123568889999988876544
No 50
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=87.60 E-value=1.7 Score=46.80 Aligned_cols=93 Identities=25% Similarity=0.366 Sum_probs=56.8
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE----eCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHH
Q 003790 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK----TTSAGHAKNLASTVDISSCPDGIICVGGDGIINEV 352 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~----T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEV 352 (795)
..++++||.-+.. .+.+.+.++..|+.+|+++.++. ........++...+.. ..+|.||.+|| ||++.+
T Consensus 18 ~~~~~lvv~d~~t-----~~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~ii~vGg-G~i~D~ 90 (250)
T PF13685_consen 18 GLKKVLVVTDENT-----YKAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRP-KDADLIIGVGG-GTIIDI 90 (250)
T ss_dssp T-SEEEEEEETTH-----HHHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS---TT--EEEEEES-HHHHHH
T ss_pred CCCcEEEEEcCCH-----HHHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcc-cCCCEEEEeCC-cHHHHH
Confidence 3478999987653 24455678889999999987553 1122233344444422 24688999988 999999
Q ss_pred HHHHHcCCCcccCCCccEEEeecC-Ccchhh
Q 003790 353 LNGLLSRGNQKEGISIPIGIIPAG-SDNSLV 382 (795)
Q Consensus 353 vNGL~~r~d~~~a~~iPLGIIP~G-TGNdfA 382 (795)
..-...+ .++|+..+|.= |.|+||
T Consensus 91 ~K~~A~~------~~~p~isVPTa~S~DG~a 115 (250)
T PF13685_consen 91 AKYAAFE------LGIPFISVPTAASHDGFA 115 (250)
T ss_dssp HHHHHHH------HT--EEEEES--SSGGGT
T ss_pred HHHHHHh------cCCCEEEecccccccccc
Confidence 9887665 26899999974 445555
No 51
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=87.49 E-value=2.8 Score=47.45 Aligned_cols=100 Identities=15% Similarity=0.239 Sum_probs=59.9
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC----cchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS----AGHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~----~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
+|++||..+.+-+..+ .+ +.+...|+.+|+++.++.--. .....++++.+.. ..+|.||++|| |++..+.-
T Consensus 27 kr~livtd~~~~~~~g--~~-~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~-~~~D~IIaiGG-GS~iD~aK 101 (383)
T cd08186 27 SKVLLVTGKSAYKKSG--AW-DKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGRE-FGAQAVIAIGG-GSPIDSAK 101 (383)
T ss_pred CEEEEEcCccHHhhcC--hH-HHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHH-cCCCEEEEeCC-ccHHHHHH
Confidence 7899998776643222 23 467788999999887663111 1233444444433 34799999999 55555554
Q ss_pred HHH---cCCCc----------ccCCCccEEEeec--CCcchhhh
Q 003790 355 GLL---SRGNQ----------KEGISIPIGIIPA--GSDNSLVW 383 (795)
Q Consensus 355 GL~---~r~d~----------~~a~~iPLGIIP~--GTGNdfAr 383 (795)
.+. ..+.. .....+|+..||. |||--..+
T Consensus 102 ~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGSE~t~ 145 (383)
T cd08186 102 SAAILLEHPGKTARDLYEFKFTPEKALPLIAINLTHGTGTEVDR 145 (383)
T ss_pred HHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCCChhhhhhCC
Confidence 432 11110 0112479999997 88766554
No 52
>PF11711 Tim54: Inner membrane protein import complex subunit Tim54; InterPro: IPR021056 Mitochondrial function depends on the import of hundreds of different proteins synthesised in the cytosol. Protein import is a multi-step pathway which includes the binding of precursor proteins to surface receptors, translocation of the precursor across one or both mitochondrial membranes, and folding and assembly of the imported protein inside the mitochondrion. Most precursor proteins carry amino-terminal targeting signals, called pre-sequences, and are imported into mitochondria via import complexes located in both the outer and the inner membrane (IM). The IM complex, TIM, is made up of at least two proteins which mediate translocation of proteins into the matrix by removing their signal peptide and another pair of proteins, Tim54 and Tim22, that insert the polytopic proteins, that carry internal targeting information, into the inner membrane [].
Probab=86.36 E-value=2.3 Score=48.45 Aligned_cols=52 Identities=33% Similarity=0.574 Sum_probs=46.0
Q ss_pred CCCCeEEEEEcCCCCCC--CchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHH
Q 003790 276 KSPPKMLVILNPRSGRG--RSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNL 327 (795)
Q Consensus 276 ~r~krllVIvNP~SG~G--ka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~el 327 (795)
..|+|+.|++.|--|.+ .+.+.|++.|+|+|.++|++|+++...++|+.+.-
T Consensus 65 ~~PRKlTVy~a~pPgD~l~~a~~~Fr~YVKPIL~AaglDyevv~g~rqGdIr~~ 118 (382)
T PF11711_consen 65 ELPRKLTVYIAPPPGDGLDVARKYFREYVKPILVAAGLDYEVVEGRRQGDIRAK 118 (382)
T ss_pred CCCceEEEEeeCCCCccHHHHHHHHHHHHHHHHHhhccceEEeccccccHHHHH
Confidence 47899999999998887 66788999999999999999999999999986543
No 53
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=85.74 E-value=4.2 Score=45.87 Aligned_cols=98 Identities=15% Similarity=0.246 Sum_probs=57.1
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe--CCc--chHHHHHHHhhhcCCCCCeEEEcCchHHHHHH
Q 003790 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT--TSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVL 353 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T--~~~--ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVv 353 (795)
.+|++||..+..-+. ..+ +.+...|+.+|+++.++.- ..+ ....+.++.+.. ..+|.||.+|| |++..+.
T Consensus 23 ~~r~livt~~~~~~~---g~~-~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~IIaiGG-GS~~D~A 96 (375)
T cd08194 23 GKRPLIVTDKVMVKL---GLV-DKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKE-GGCDVIIALGG-GSPIDTA 96 (375)
T ss_pred CCeEEEEcCcchhhc---chH-HHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHh-cCCCEEEEeCC-chHHHHH
Confidence 368999987655421 234 4688899999998876531 121 223344444432 34799999998 6666655
Q ss_pred HHHH---cCCC---------cccCCCccEEEeec--CCcchh
Q 003790 354 NGLL---SRGN---------QKEGISIPIGIIPA--GSDNSL 381 (795)
Q Consensus 354 NGL~---~r~d---------~~~a~~iPLGIIP~--GTGNdf 381 (795)
-.+. ..+. ......+|+..||. |||--.
T Consensus 97 Kaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagtGsE~ 138 (375)
T cd08194 97 KAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTTAGTGSEV 138 (375)
T ss_pred HHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCCCcccccc
Confidence 5432 1110 00113579999997 555443
No 54
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=85.15 E-value=5.4 Score=44.95 Aligned_cols=86 Identities=16% Similarity=0.252 Sum_probs=54.0
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe-C-----CcchHHHHHHHhhhcCCCC---CeEEEcCchHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT-T-----SAGHAKNLASTVDISSCPD---GIICVGGDGII 349 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T-~-----~~ghA~ela~~l~~~~~~D---~IVvvGGDGTl 349 (795)
+|++||..+.-. +.+.+.+...|+.+|+++.++.- . .-....++++.+... +.| .||++|| |++
T Consensus 24 ~rvlvVtd~~v~-----~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~-~~dr~~~IIAvGG-Gsv 96 (355)
T cd08197 24 DKYLLVTDSNVE-----DLYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERALAL-GATRRSVIVALGG-GVV 96 (355)
T ss_pred CeEEEEECccHH-----HHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHc-CCCCCcEEEEECC-cHH
Confidence 689999886532 23446788899999987654431 1 122344555444322 245 7888876 888
Q ss_pred HHHHHHHHcCCCcccCCCccEEEeec
Q 003790 350 NEVLNGLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 350 nEVvNGL~~r~d~~~a~~iPLGIIP~ 375 (795)
..++-.+...-. ..+|+..||.
T Consensus 97 ~D~ak~~A~~~~----rgip~I~IPT 118 (355)
T cd08197 97 GNIAGLLAALLF----RGIRLVHIPT 118 (355)
T ss_pred HHHHHHHHHHhc----cCCCEEEecC
Confidence 887766543210 2589999998
No 55
>PRK11914 diacylglycerol kinase; Reviewed
Probab=84.77 E-value=0.63 Score=50.75 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=27.9
Q ss_pred eeeeeec-cCCCCCCcccCCCCCcCCCCCCCCCCCCCCCcccCC
Q 003790 494 LYTDIMR-KSKNEGMPRASSLSSIDSIMTPSRMSGGDPDTTCSS 536 (795)
Q Consensus 494 ~~v~V~N-r~~GgG~~iaP~A~~~d~~~t~~~~~DG~Ldvv~~~ 536 (795)
.++.|+| ++||||+.++|+|++ +||.||+++..
T Consensus 202 ~~~~v~N~~~~GG~~~~~p~a~~----------~DG~ldv~~v~ 235 (306)
T PRK11914 202 TLAAFGNTRSYGGGMLICPNADH----------TDGLLDITMVQ 235 (306)
T ss_pred EEEEEeCcccccCCceeCCCCcC----------CCCcEEEEEEe
Confidence 4677999 999999999999984 78999977643
No 56
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=84.27 E-value=0.6 Score=50.69 Aligned_cols=32 Identities=16% Similarity=0.044 Sum_probs=27.6
Q ss_pred eeeeeec-cCCCCCCcccCCCCCcCCCCCCCCCCCCCCCcccC
Q 003790 494 LYTDIMR-KSKNEGMPRASSLSSIDSIMTPSRMSGGDPDTTCS 535 (795)
Q Consensus 494 ~~v~V~N-r~~GgG~~iaP~A~~~d~~~t~~~~~DG~Ldvv~~ 535 (795)
.++.++| +|+|||+.++|+|++ +||.||+++.
T Consensus 189 ~~~~v~N~~~~GGg~~i~P~A~~----------~DG~Ldv~~v 221 (293)
T TIGR03702 189 LALGIGNGRQAGGGQVLCPDALI----------NDGLLDVRIL 221 (293)
T ss_pred EEEEEECCCcCCCCceeCCCCcc----------CCceEEEEEe
Confidence 4677899 999999999999984 7899998764
No 57
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=84.23 E-value=5.3 Score=44.81 Aligned_cols=100 Identities=16% Similarity=0.256 Sum_probs=59.7
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE--eCCc--chHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK--TTSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~--T~~~--ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
+|++|+.-+.+-...+ .+ +.+...|+.+|+++.++. ...+ ....++++.+.. ..+|.||.+|| |++-.+..
T Consensus 26 ~r~lvVt~~~~~~~~g--~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~IIavGG-GSviD~aK 100 (357)
T cd08181 26 KRALIVTGKSSAKKNG--SL-DDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKK-FNADFVIGIGG-GSPLDAAK 100 (357)
T ss_pred CEEEEEeCCchHhhcC--cH-HHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHh-cCCCEEEEeCC-chHHHHHH
Confidence 7899998777643322 23 467788999999887652 1112 223444444433 34799999999 66666665
Q ss_pred HHH---cCCC--------cccCCCccEEEeec--CCcchhhh
Q 003790 355 GLL---SRGN--------QKEGISIPIGIIPA--GSDNSLVW 383 (795)
Q Consensus 355 GL~---~r~d--------~~~a~~iPLGIIP~--GTGNdfAr 383 (795)
++. ..+. ......+|+..||. |||--...
T Consensus 101 ~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTtagTGsE~t~ 142 (357)
T cd08181 101 AIAVLIKNPDLKVELYFRSKYLKALPVVAIPTTAGTGSEVTQ 142 (357)
T ss_pred HHHHHHhCCCcHHHHhcccccCCCCCEEEEeCCCcchhhhCC
Confidence 432 1100 00113589999997 77665554
No 58
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=84.14 E-value=5.4 Score=45.07 Aligned_cols=99 Identities=18% Similarity=0.275 Sum_probs=57.5
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe--CCc--chHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT--TSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T--~~~--ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
+|++|+..+..-+ ...+ +.++..|+.+++++.++.- ..+ ....++++.+.. ..+|.||.+|| |++-.+..
T Consensus 29 ~~~lvv~~~~~~~---~~~~-~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~-~~~D~IIavGG-GS~iD~aK 102 (377)
T cd08176 29 KKALIVTDKGLVK---IGVV-EKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKK-EGCDFIISIGG-GSPHDCAK 102 (377)
T ss_pred CeEEEECCchHhh---cCcH-HHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHh-cCCCEEEEeCC-cHHHHHHH
Confidence 6888887765432 1223 5788899999998876521 112 223344444432 34799999998 56655554
Q ss_pred HHH---cCC---------CcccCCCccEEEeec--CCcchhhh
Q 003790 355 GLL---SRG---------NQKEGISIPIGIIPA--GSDNSLVW 383 (795)
Q Consensus 355 GL~---~r~---------d~~~a~~iPLGIIP~--GTGNdfAr 383 (795)
.+. ..+ .......+|+..||. |||--...
T Consensus 103 ~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagTgSe~t~ 145 (377)
T cd08176 103 AIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTAGTASEVTI 145 (377)
T ss_pred HHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCCcchhccCC
Confidence 432 110 000113589999997 77665543
No 59
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=83.75 E-value=0.67 Score=56.14 Aligned_cols=99 Identities=16% Similarity=0.044 Sum_probs=65.1
Q ss_pred EEEEEEEEeeeccchhh--------hHHHHh-hcCcHHHHHHHHHHHhc--CCce--EEEEEEecCCccccccccccccc
Q 003790 421 FGMTVSYYGFVSDVLEL--------SEKYQK-RFGPLRYFVAGFLKFLC--LPKY--SYEVEYLPASKEDLEGKQSAERE 487 (795)
Q Consensus 421 ffln~~g~GfdAdV~~~--------sek~Rr-~lG~lrY~laal~~L~~--~r~y--~~~I~~~p~~~~~~~g~~~~~~e 487 (795)
.+.|.+|+|+||.|.-. .|++|. ....+-|-+-+-+.|+. ++.. ++.++-+ ++
T Consensus 614 VMNNYFGIGlDAKISLDFhnKReEhPeKcrSR~kn~MWYGvLGtKeLLhrTyrnLEQRV~LECD--------------G~ 679 (1099)
T KOG1170|consen 614 VMNNYFGIGLDAKISLDFHNKREEHPEKCRSRSKNFMWYGVLGTKELLHRTYRNLEQRVKLECD--------------GV 679 (1099)
T ss_pred hhccccccccceeEeeecccccccChHHHhHHhhhcchhhhcchHHHHHHHHHhHHHHeeeecC--------------Cc
Confidence 46688999999999643 245552 22344455555666664 3333 3344432 33
Q ss_pred eeecCce-eeeeec-cCCCCCCcccCCCCCcCCCCCCCCCCCCCCCccc
Q 003790 488 VVDMSDL-YTDIMR-KSKNEGMPRASSLSSIDSIMTPSRMSGGDPDTTC 534 (795)
Q Consensus 488 k~e~~~~-~v~V~N-r~~GgG~~iaP~A~~~d~~~t~~~~~DG~Ldvv~ 534 (795)
.+.++.+ -.+|.| +.|.||..+..... .|-++++.-++|+.|.||.
T Consensus 680 ~i~lP~LQGIviLNIpSyaGGtNFWGsnk-~dd~f~apSfDDriLEVVA 727 (1099)
T KOG1170|consen 680 PIDLPSLQGIVILNIPSYAGGTNFWGSNK-DDDEFTAPSFDDRILEVVA 727 (1099)
T ss_pred ccCCcccceeEEEecccccCcccccCCCC-CCCcccCCCcccceeEEee
Confidence 4556666 677889 99999999987655 3456677779999999875
No 60
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=83.28 E-value=5.7 Score=44.92 Aligned_cols=99 Identities=17% Similarity=0.259 Sum_probs=57.7
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC--Cc--chHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT--SA--GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~--~~--ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
+|++||.-+.+....+ .+ +.++..|+.+|+++.++.-- .+ ....+.++.+.. ..+|.||.+|| |++..+..
T Consensus 29 ~r~livt~~~~~~~~~--~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~IIaiGG-GS~iD~aK 103 (382)
T cd08187 29 KKVLLVYGGGSIKKNG--LY-DRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKE-EKVDFILAVGG-GSVIDSAK 103 (382)
T ss_pred CEEEEEeCCcHHHhcC--cH-HHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHH-cCCCEEEEeCC-hHHHHHHH
Confidence 7899997766654322 23 46788999999987665321 11 223333343322 34799999999 66666655
Q ss_pred HHHc---CCC---------cccCCCccEEEeec--CCcchhh
Q 003790 355 GLLS---RGN---------QKEGISIPIGIIPA--GSDNSLV 382 (795)
Q Consensus 355 GL~~---r~d---------~~~a~~iPLGIIP~--GTGNdfA 382 (795)
++.- .+. ......+|+..||. |||--..
T Consensus 104 ~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGsE~t 145 (382)
T cd08187 104 AIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLAATGSEMN 145 (382)
T ss_pred HHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCCchhhccC
Confidence 4422 100 00013579999996 6664444
No 61
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=83.16 E-value=4.2 Score=45.92 Aligned_cols=100 Identities=18% Similarity=0.195 Sum_probs=58.2
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE--eCC--cchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK--TTS--AGHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~--T~~--~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
+|++||..+.+-... ..+ +++...|+.+|+++.++. ... .....+.++.+.. ..+|.||.+|| |.+-.+.-
T Consensus 26 ~r~livt~~~~~~~~--g~~-~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~IiavGG-GS~iD~aK 100 (380)
T cd08185 26 KKALIVTGNGSSKKT--GYL-DRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALARE-EGCDFVVGLGG-GSSMDTAK 100 (380)
T ss_pred CeEEEEeCCCchhhc--cHH-HHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHH-cCCCEEEEeCC-ccHHHHHH
Confidence 789999987663222 234 578889999999887652 111 1233444444432 34799999999 55555544
Q ss_pred HHHc---CCC--------------cccCCCccEEEeec--CCcchhhh
Q 003790 355 GLLS---RGN--------------QKEGISIPIGIIPA--GSDNSLVW 383 (795)
Q Consensus 355 GL~~---r~d--------------~~~a~~iPLGIIP~--GTGNdfAr 383 (795)
.+.- .+. ......+|+..||. |||--..+
T Consensus 101 ~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t~ 148 (380)
T cd08185 101 AIAFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTAGTGSEADP 148 (380)
T ss_pred HHHHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCChhhhccCC
Confidence 4321 100 00113589999995 77655544
No 62
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=82.40 E-value=12 Score=42.61 Aligned_cols=101 Identities=19% Similarity=0.283 Sum_probs=61.7
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchH----HHHHHHhhhcCCCCCeEEEcCchHHHHHH
Q 003790 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHA----KNLASTVDISSCPDGIICVGGDGIINEVL 353 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA----~ela~~l~~~~~~D~IVvvGGDGTlnEVv 353 (795)
-+|++|+--|.--+ ..++ +.+...|++++++|.++.--.++-- .+.++.+.. ..+|.||++|| |..-.++
T Consensus 29 ~~r~liVTd~~~~~---~g~~-~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~-~~~D~iIalGG-GS~~D~A 102 (377)
T COG1454 29 AKRALIVTDRGLAK---LGLL-DKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVARE-FGPDTIIALGG-GSVIDAA 102 (377)
T ss_pred CCceEEEECCcccc---chhH-HHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHh-cCCCEEEEeCC-ccHHHHH
Confidence 47889998876321 1234 5788899999999888753333322 222233332 34799999999 5555555
Q ss_pred HHH---HcCCC---------cccCCCccEEEeec--CCcchhhhh
Q 003790 354 NGL---LSRGN---------QKEGISIPIGIIPA--GSDNSLVWT 384 (795)
Q Consensus 354 NGL---~~r~d---------~~~a~~iPLGIIP~--GTGNdfArs 384 (795)
.++ ...++ .....+.||-.||. |||--..+.
T Consensus 103 K~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTTaGTGSEvT~~ 147 (377)
T COG1454 103 KAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTTAGTGSEVTPF 147 (377)
T ss_pred HHHHHHhhCCchhhhhcccccccCCCCCEEEecCCCcchhhhcCe
Confidence 543 33221 00223489999996 888887763
No 63
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=82.33 E-value=7.8 Score=42.91 Aligned_cols=85 Identities=18% Similarity=0.248 Sum_probs=54.7
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCC-eEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGF-KLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLL 357 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi-~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~ 357 (795)
+|++||..+.. + +.+...|+.+++ .+..+.........++.+.+...+..|.||.+|| |++..+.-.+.
T Consensus 26 ~r~livtd~~~--------~-~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~iIaiGG-Gsv~D~aK~vA 95 (331)
T cd08174 26 GRVAVVSGPGV--------G-EQVAESLKTSFSAEVEAVEEVSNSDAEEIGARARSIPNVDAVVGIGG-GKVIDVAKYAA 95 (331)
T ss_pred CceEEEECCcH--------H-HHHHHHHHhccCceEEEecCCCccCHHHHHHHHHhccCCCEEEEeCC-cHHHHHHHHHH
Confidence 78999997765 2 356667777776 4433332222334444444432223699999998 88888888776
Q ss_pred cCCCcccCCCccEEEeecCCcc
Q 003790 358 SRGNQKEGISIPIGIIPAGSDN 379 (795)
Q Consensus 358 ~r~d~~~a~~iPLGIIP~GTGN 379 (795)
.. ..+|+..||.=.++
T Consensus 96 ~~------~~~p~i~vPTt~~t 111 (331)
T cd08174 96 FL------RGIPLSVPTTNLND 111 (331)
T ss_pred hh------cCCCEEEecCcccc
Confidence 53 26899999975444
No 64
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=82.33 E-value=8.5 Score=43.59 Aligned_cols=99 Identities=20% Similarity=0.305 Sum_probs=57.0
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE--eCCc--chHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK--TTSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~--T~~~--ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
+|++|+..+..-+. ..+ +.+...|+++|+++.++. ...+ +...+.++.+.. ..+|.||.+|| |.+-.+.-
T Consensus 31 ~~~lvvtd~~~~~~---g~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~IIaiGG-GS~iD~aK 104 (382)
T PRK10624 31 KKALIVTDKTLVKC---GVV-AKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKA-SGADYLIAIGG-GSPQDTCK 104 (382)
T ss_pred CEEEEEeCcchhhC---cch-HHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHh-cCCCEEEEeCC-hHHHHHHH
Confidence 68899887643321 123 578889999999887663 1111 223334444332 24799999998 56555554
Q ss_pred HH---HcCCC-----------cccCCCccEEEeec--CCcchhhh
Q 003790 355 GL---LSRGN-----------QKEGISIPIGIIPA--GSDNSLVW 383 (795)
Q Consensus 355 GL---~~r~d-----------~~~a~~iPLGIIP~--GTGNdfAr 383 (795)
.+ +..++ ......+|+..||. |||--...
T Consensus 105 ~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTagTGse~t~ 149 (382)
T PRK10624 105 AIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTAGTAAEVTI 149 (382)
T ss_pred HHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCCchhhhhcc
Confidence 32 22211 00113489999996 66654443
No 65
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=82.24 E-value=6.4 Score=43.78 Aligned_cols=84 Identities=13% Similarity=0.223 Sum_probs=56.3
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC-----CcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT-----SAGHAKNLASTVDISSCPDGIICVGGDGIINEVL 353 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~-----~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVv 353 (795)
+|++||..+..-. .+.+.+...|+++++++.++..+ ......++++.+.. ..|.||++|| |++..+.
T Consensus 25 ~kvlivtd~~~~~-----~~~~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~--~~d~IIaiGG-Gsv~D~a 96 (332)
T cd08549 25 SKIMIVCGNNTYK-----VAGKEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK--DTEFLLGIGS-GTIIDLV 96 (332)
T ss_pred CcEEEEECCcHHH-----HHHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc--CCCEEEEECC-cHHHHHH
Confidence 6899998866532 23357888999999877665322 12334455555543 4699999999 7888887
Q ss_pred HHHHcCCCcccCCCccEEEeecC
Q 003790 354 NGLLSRGNQKEGISIPIGIIPAG 376 (795)
Q Consensus 354 NGL~~r~d~~~a~~iPLGIIP~G 376 (795)
-.+.-. ..+|+..||.=
T Consensus 97 K~iA~~------~gip~I~VPTT 113 (332)
T cd08549 97 KFVSFK------VGKPFISVPTA 113 (332)
T ss_pred HHHHHH------cCCCEEEeCCC
Confidence 776532 25899999963
No 66
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=81.48 E-value=6.3 Score=43.94 Aligned_cols=91 Identities=18% Similarity=0.239 Sum_probs=56.1
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe-CCc--chHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT-TSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T-~~~--ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNG 355 (795)
+|++||.-+...+ . +.+.+...|+.+|+++.+... ..+ ....+.++.+.. ...|.||.+|| |++-.+.-.
T Consensus 23 ~r~livt~~~~~~----~-~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIavGG-GS~iD~aK~ 95 (351)
T cd08170 23 KRALIIADEFVLD----L-VGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARD-NGADVVIGIGG-GKTLDTAKA 95 (351)
T ss_pred CeEEEEECHHHHH----H-HHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhh-cCCCEEEEecC-chhhHHHHH
Confidence 7888887443322 2 336788899999988653322 111 233344444332 34799999999 677777766
Q ss_pred HHcCCCcccCCCccEEEeec--CCcchhh
Q 003790 356 LLSRGNQKEGISIPIGIIPA--GSDNSLV 382 (795)
Q Consensus 356 L~~r~d~~~a~~iPLGIIP~--GTGNdfA 382 (795)
+... ..+|+..||. |||--..
T Consensus 96 ia~~------~~~P~iaIPTTagTgse~t 118 (351)
T cd08170 96 VADY------LGAPVVIVPTIASTDAPTS 118 (351)
T ss_pred HHHH------cCCCEEEeCCccccCcccc
Confidence 6433 1589999997 5554433
No 67
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=81.13 E-value=5.3 Score=44.57 Aligned_cols=84 Identities=18% Similarity=0.223 Sum_probs=54.1
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe--CCc--chHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT--TSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T--~~~--ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
+|++||..+.+-. . +.+.+...|+.+++++.++.- ..+ ....++++.+. ...+|.||.+|| |++..+.-
T Consensus 23 ~r~liv~d~~~~~----~-~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~-~~~~d~iiavGG-Gs~~D~aK 95 (345)
T cd08171 23 KKVVVIGGKTALA----A-AKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPA-VQEADMIFAVGG-GKAIDTVK 95 (345)
T ss_pred CEEEEEeCHHHHH----H-HHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHh-hcCCCEEEEeCC-cHHHHHHH
Confidence 7889997765431 2 236788899999988765432 111 12233333332 234799999999 78888877
Q ss_pred HHHcCCCcccCCCccEEEeec
Q 003790 355 GLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 355 GL~~r~d~~~a~~iPLGIIP~ 375 (795)
.+...- .+|+..||.
T Consensus 96 ~ia~~~------~~p~i~VPT 110 (345)
T cd08171 96 VLADKL------GKPVFTFPT 110 (345)
T ss_pred HHHHHc------CCCEEEecC
Confidence 765431 479999997
No 68
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=81.12 E-value=2.6 Score=47.87 Aligned_cols=112 Identities=21% Similarity=0.265 Sum_probs=63.1
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHH----------------------HHHHhhhc
Q 003790 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKN----------------------LASTVDIS 334 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~e----------------------la~~l~~~ 334 (795)
.+++.++|.|+. ...-...+.+.++-+++... ++.|+.-..-..... +..+ ..
T Consensus 92 ~p~~~~lv~K~~--d~s~~~~~~Elv~~ll~~~~-~i~V~v~~~~~~~~~f~~~~~~e~~~~~~~i~y~~~e~~~d--~~ 166 (409)
T KOG2178|consen 92 KPPKNLLVTKKN--DESVLEKFVELVEWLLQTFP-NITVYVEDKVAKDKQFSAGNLDESFGVKERILYWTTEGCDD--LP 166 (409)
T ss_pred CCCceEEEEcCC--cHHHHHHHHHHHHHHHhhCC-CeEEEechhhhhhhhhcccchhhcccchhceEeeccccccc--cc
Confidence 678899999987 22222334445555555442 343433222111111 1111 12
Q ss_pred CCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeecCCcchhhhhhcCCCCHHHHHHHHHhCc
Q 003790 335 SCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGG 402 (795)
Q Consensus 335 ~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArsllGi~dp~~Aa~~IlkG~ 402 (795)
..+|.||++||||||--+.. |+++. -+|+--+-.||--=|. -+-..+..+.+..++.|+
T Consensus 167 ~~~D~iItLGGDGTvL~aS~-LFq~~------VPPV~sFslGslGFLt--pf~f~~f~~~l~~v~~~~ 225 (409)
T KOG2178|consen 167 NRFDLIITLGGDGTVLYASS-LFQRS------VPPVLSFSLGSLGFLT--PFPFANFQEQLARVLNGR 225 (409)
T ss_pred cceeEEEEecCCccEEEehh-hhcCC------CCCeEEeecCCccccc--cccHHHHHHHHHHHhcCc
Confidence 34799999999999988765 44442 3677777777522111 122245667888888887
No 69
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=80.57 E-value=9.5 Score=42.55 Aligned_cols=89 Identities=19% Similarity=0.308 Sum_probs=55.6
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC------CcchHHHHHHHhhhcC--CCCCeEEEcCchH
Q 003790 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT------SAGHAKNLASTVDISS--CPDGIICVGGDGI 348 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~------~~ghA~ela~~l~~~~--~~D~IVvvGGDGT 348 (795)
..+|++||..+..-+ .+.+.+...|+.+|+++.++.-. .-....++++.+...+ ..|.||++|| |+
T Consensus 23 ~~~~~livtd~~~~~-----~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gs 96 (345)
T cd08195 23 KGSKILIVTDENVAP-----LYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLEAGLDRKSLIIALGG-GV 96 (345)
T ss_pred CCCeEEEEECCchHH-----HHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCCCCeEEEECC-hH
Confidence 347899999876642 24467888999998877654422 2234445554443221 1388888887 77
Q ss_pred HHHHHHHHHcCCCcccCCCccEEEeec
Q 003790 349 INEVLNGLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 349 lnEVvNGL~~r~d~~~a~~iPLGIIP~ 375 (795)
+..++-.+.... ...+|+..||.
T Consensus 97 v~D~ak~vA~~~----~rgip~i~VPT 119 (345)
T cd08195 97 VGDLAGFVAATY----MRGIDFIQIPT 119 (345)
T ss_pred HHhHHHHHHHHH----hcCCCeEEcch
Confidence 777776654210 01588999985
No 70
>PRK13057 putative lipid kinase; Reviewed
Probab=80.17 E-value=1.1 Score=48.46 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=26.7
Q ss_pred eeeeeec-cCCCCCCcccCCCCCcCCCCCCCCCCCCCCCcccC
Q 003790 494 LYTDIMR-KSKNEGMPRASSLSSIDSIMTPSRMSGGDPDTTCS 535 (795)
Q Consensus 494 ~~v~V~N-r~~GgG~~iaP~A~~~d~~~t~~~~~DG~Ldvv~~ 535 (795)
.++.++| +++|+|++++|+|+ ++||.||+++.
T Consensus 182 ~~~~v~N~~~~gg~~~~~p~a~----------~~DG~ldv~~v 214 (287)
T PRK13057 182 LQVAVGNGRYYGGGMTVAHDAT----------IDDGRLDLYSL 214 (287)
T ss_pred EEEEEecCcccCCCcccCCCCC----------CCCceEEEEEe
Confidence 3567889 99999999999998 47899997663
No 71
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=79.65 E-value=12 Score=41.58 Aligned_cols=86 Identities=23% Similarity=0.373 Sum_probs=57.5
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc--chHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~--ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL 356 (795)
+|++||..+...+ .+.+.++..|+.++ .+.++....+ ....++++.+... ..|.||++|| |++..++-.+
T Consensus 26 ~~~liv~d~~~~~-----~~~~~v~~~l~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~~d~iIaiGG-Gs~~D~aK~~ 97 (339)
T cd08173 26 GRVLVVTGPTTKS-----IAGKKVEALLEDEG-EVDVVIVEDATYEEVEKVESSARDI-GADFVIGVGG-GRVIDVAKVA 97 (339)
T ss_pred CeEEEEECCchHH-----HHHHHHHHHHHhcC-CeEEEEeCCCCHHHHHHHHHHhhhc-CCCEEEEeCC-chHHHHHHHH
Confidence 6899998766532 24467888999888 7666544332 2334444444332 4699999998 8888888877
Q ss_pred HcCCCcccCCCccEEEeecCCc
Q 003790 357 LSRGNQKEGISIPIGIIPAGSD 378 (795)
Q Consensus 357 ~~r~d~~~a~~iPLGIIP~GTG 378 (795)
... ..+|+..||.=.+
T Consensus 98 a~~------~~~p~i~iPTT~~ 113 (339)
T cd08173 98 AYK------LGIPFISVPTAAS 113 (339)
T ss_pred HHh------cCCCEEEecCccc
Confidence 533 2589999997443
No 72
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=79.57 E-value=12 Score=41.69 Aligned_cols=88 Identities=16% Similarity=0.290 Sum_probs=53.7
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC------CcchHHHHHHHhhhcC--CCCCeEEEcCchHH
Q 003790 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT------SAGHAKNLASTVDISS--CPDGIICVGGDGII 349 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~------~~ghA~ela~~l~~~~--~~D~IVvvGGDGTl 349 (795)
.+|++||.++..-+ .+.+.+.+.|+.+|+++.++.-. ......++++.+...+ ..|.||++|| |++
T Consensus 20 ~~~~livtd~~~~~-----~~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gsv 93 (344)
T TIGR01357 20 PSKLVIITDETVAD-----LYADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGG-GVV 93 (344)
T ss_pred CCeEEEEECCchHH-----HHHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-hHH
Confidence 47899998755532 23467888999999877533221 1233445544443221 2488999988 777
Q ss_pred HHHHHHHHcCCCcccCCCccEEEeec
Q 003790 350 NEVLNGLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 350 nEVvNGL~~r~d~~~a~~iPLGIIP~ 375 (795)
..++-.+.... ...+|+..||.
T Consensus 94 ~D~aK~iA~~~----~~~~p~i~VPT 115 (344)
T TIGR01357 94 GDLAGFVAATY----MRGIRFIQVPT 115 (344)
T ss_pred HHHHHHHHHHH----ccCCCEEEecC
Confidence 77776654211 02579999996
No 73
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=78.72 E-value=13 Score=41.64 Aligned_cols=88 Identities=17% Similarity=0.287 Sum_probs=55.0
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE-eC-----CcchHHHHHHHhhhcC--CCCCeEEEcCchHH
Q 003790 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK-TT-----SAGHAKNLASTVDISS--CPDGIICVGGDGII 349 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~-T~-----~~ghA~ela~~l~~~~--~~D~IVvvGGDGTl 349 (795)
.+|++||..+.... .+.+.+...|+.+|+++.++. .. .-....++++.+...+ ..|.||++|| |++
T Consensus 31 ~~~~livtd~~~~~-----~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gsv 104 (358)
T PRK00002 31 GKKVAIVTDETVAP-----LYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEAGLDRSDTLIALGG-GVI 104 (358)
T ss_pred CCeEEEEECCchHH-----HHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-cHH
Confidence 36899999765532 244678889999998877542 11 1233344444442211 2488999987 788
Q ss_pred HHHHHHHHcCCCcccCCCccEEEeec
Q 003790 350 NEVLNGLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 350 nEVvNGL~~r~d~~~a~~iPLGIIP~ 375 (795)
..++..+.... ...+|+..||.
T Consensus 105 ~D~aK~iA~~~----~~gip~i~IPT 126 (358)
T PRK00002 105 GDLAGFAAATY----MRGIRFIQVPT 126 (358)
T ss_pred HHHHHHHHHHh----cCCCCEEEcCc
Confidence 88777664211 02589999997
No 74
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=78.65 E-value=14 Score=41.47 Aligned_cols=94 Identities=20% Similarity=0.352 Sum_probs=53.6
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc----chHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA----GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~----ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
+|++||..+..- +.+.+...|+.+++++.++.--.+ ....++++.+.. ..+|.||.+|| |++..+.-
T Consensus 24 ~~~livtd~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIavGG-Gs~~D~aK 94 (367)
T cd08182 24 KRVLLVTGPRSA-------IASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLRE-FGPDAVLAVGG-GSVLDTAK 94 (367)
T ss_pred CeEEEEeCchHH-------HHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHh-cCcCEEEEeCC-cHHHHHHH
Confidence 688888665543 224567788888887765532111 223444444432 24799999998 66666555
Q ss_pred HHHc---CC-------------CcccCCCccEEEeec--CCcchh
Q 003790 355 GLLS---RG-------------NQKEGISIPIGIIPA--GSDNSL 381 (795)
Q Consensus 355 GL~~---r~-------------d~~~a~~iPLGIIP~--GTGNdf 381 (795)
.+.. .+ .......+|+..||. |||--.
T Consensus 95 ~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtgse~ 139 (367)
T cd08182 95 ALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTAGTGSEV 139 (367)
T ss_pred HHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCCCchhhh
Confidence 4421 11 000113589999997 555433
No 75
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=78.41 E-value=11 Score=42.22 Aligned_cols=84 Identities=25% Similarity=0.354 Sum_probs=56.0
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc--hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG--HAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g--hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL 356 (795)
+|++||..+..-+ .+.+.++..|+..+ ++.++....+. ...++++.+... ..|.||++|| |++..++-.+
T Consensus 35 ~~~livtd~~~~~-----~~~~~l~~~l~~~~-~~~~~~~~~~t~~~v~~~~~~~~~~-~~d~IIaiGG-Gsv~D~ak~v 106 (350)
T PRK00843 35 GRALIVTGPTTKK-----IAGDRVEENLEDAG-DVEVVIVDEATMEEVEKVEEKAKDV-NAGFLIGVGG-GKVIDVAKLA 106 (350)
T ss_pred CeEEEEECCcHHH-----HHHHHHHHHHHhcC-CeeEEeCCCCCHHHHHHHHHHhhcc-CCCEEEEeCC-chHHHHHHHH
Confidence 6899998877642 23467888888887 66555443332 334455544332 3699999998 8888888776
Q ss_pred HcCCCcccCCCccEEEeecC
Q 003790 357 LSRGNQKEGISIPIGIIPAG 376 (795)
Q Consensus 357 ~~r~d~~~a~~iPLGIIP~G 376 (795)
.-. ..+|+..||.=
T Consensus 107 A~~------rgip~I~IPTT 120 (350)
T PRK00843 107 AYR------LGIPFISVPTA 120 (350)
T ss_pred HHh------cCCCEEEeCCC
Confidence 532 25899999963
No 76
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=78.15 E-value=8.9 Score=43.67 Aligned_cols=72 Identities=18% Similarity=0.220 Sum_probs=42.3
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe--CCc--chHHHHHHHhhhcCCCCCeEEEcCchHHHHHH
Q 003790 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT--TSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVL 353 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T--~~~--ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVv 353 (795)
.+|++||.-+..-. ...+ +.+...|+.+|+++.++.- ..+ ....++++.+.. ..+|.||.+|| |.+-.+.
T Consensus 21 ~~k~liVtd~~~~~---~g~~-~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~-~~~D~IIaiGG-GS~iD~A 94 (398)
T cd08178 21 KKRAFIVTDRFMVK---LGYV-DKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNS-FKPDTIIALGG-GSPMDAA 94 (398)
T ss_pred CCeEEEEcChhHHh---CccH-HHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHh-cCCCEEEEeCC-ccHHHHH
Confidence 37888887543211 1123 5788899999998866531 112 233444444433 34799999999 4444444
Q ss_pred HH
Q 003790 354 NG 355 (795)
Q Consensus 354 NG 355 (795)
-.
T Consensus 95 K~ 96 (398)
T cd08178 95 KI 96 (398)
T ss_pred HH
Confidence 43
No 77
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=77.71 E-value=13 Score=41.84 Aligned_cols=89 Identities=15% Similarity=0.290 Sum_probs=55.3
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE-e-----CCcchHHHHHHHhhhc---CCCCCeEEEcCch
Q 003790 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK-T-----TSAGHAKNLASTVDIS---SCPDGIICVGGDG 347 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~-T-----~~~ghA~ela~~l~~~---~~~D~IVvvGGDG 347 (795)
..+|++||..+..- +.+.+.+...|+.+|+++..+. . ..-....++++.+... ..+|.||++|| |
T Consensus 25 ~~~~~lvVtd~~v~-----~~~~~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGG-G 98 (354)
T cd08199 25 GSGRRFVVVDQNVD-----KLYGKKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGG-G 98 (354)
T ss_pred CCCeEEEEECccHH-----HHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECC-c
Confidence 46889999977653 1233678889998998877532 1 1223444444444321 11388888887 7
Q ss_pred HHHHHHHHHHcCCCcccCCCccEEEeec
Q 003790 348 IINEVLNGLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 348 TlnEVvNGL~~r~d~~~a~~iPLGIIP~ 375 (795)
++..++-.+...-. ..+|+..||.
T Consensus 99 ~v~D~ak~~A~~~~----rg~p~i~VPT 122 (354)
T cd08199 99 VLTDVAGLAASLYR----RGTPYVRIPT 122 (354)
T ss_pred HHHHHHHHHHHHhc----CCCCEEEEcC
Confidence 88887777652110 1589999996
No 78
>PRK13054 lipid kinase; Reviewed
Probab=77.69 E-value=1.5 Score=47.75 Aligned_cols=32 Identities=16% Similarity=0.063 Sum_probs=27.2
Q ss_pred eeeeeec-cCCCCCCcccCCCCCcCCCCCCCCCCCCCCCcccC
Q 003790 494 LYTDIMR-KSKNEGMPRASSLSSIDSIMTPSRMSGGDPDTTCS 535 (795)
Q Consensus 494 ~~v~V~N-r~~GgG~~iaP~A~~~d~~~t~~~~~DG~Ldvv~~ 535 (795)
.++.++| +++|+|+.++|+|++ +||.||+++.
T Consensus 193 ~~~~v~N~~~~ggg~~~~p~a~~----------~DG~ldv~~~ 225 (300)
T PRK13054 193 LVIGIGNGRQAGGGQQLCPEALI----------NDGLLDLRIL 225 (300)
T ss_pred EEEEEECCCcCCCCcccCCCCcC----------CCCeEEEEEE
Confidence 4677889 999999999999984 7899997764
No 79
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=77.06 E-value=15 Score=41.64 Aligned_cols=98 Identities=21% Similarity=0.281 Sum_probs=56.0
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE--eCCc--chHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK--TTSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~--T~~~--ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
+|++|+..+..-+. ..+ +.+...|+++|+++.++. ...+ ....+.++.+.. ..+|.||.+|| |.+-.+..
T Consensus 30 ~r~lvvt~~~~~~~---g~~-~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~IiaiGG-GSviD~aK 103 (379)
T TIGR02638 30 KKALVVTDKDLIKF---GVA-DKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKA-SGADYLIAIGG-GSPIDTAK 103 (379)
T ss_pred CEEEEEcCcchhhc---cch-HHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHh-cCCCEEEEeCC-hHHHHHHH
Confidence 68999887654221 123 568889999999887763 1111 233344444333 34799999999 55555553
Q ss_pred HH---HcCCC-----------cccCCCccEEEeec--CCcchhh
Q 003790 355 GL---LSRGN-----------QKEGISIPIGIIPA--GSDNSLV 382 (795)
Q Consensus 355 GL---~~r~d-----------~~~a~~iPLGIIP~--GTGNdfA 382 (795)
++ +..+. ......+|+..||. |||--..
T Consensus 104 aia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagTGse~t 147 (379)
T TIGR02638 104 AIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTTAGTAAEVT 147 (379)
T ss_pred HHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCCCchhhhhC
Confidence 32 22110 00113479999997 6654444
No 80
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=76.80 E-value=10 Score=42.28 Aligned_cols=87 Identities=21% Similarity=0.226 Sum_probs=55.6
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE-e-C-CcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK-T-T-SAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~-T-~-~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNG 355 (795)
+|++||..+..-+ ..+ +.+...|+.+++.+.++. . + ......++++.+.. ..+|.||.+|| |++..+.-.
T Consensus 23 ~~~liv~~~~~~~----~~~-~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~-~~~d~IIavGG-Gs~~D~aK~ 95 (349)
T cd08550 23 SKVAVVGGKTVLK----KSR-PRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEE-QEADVIIGVGG-GKTLDTAKA 95 (349)
T ss_pred CeEEEEEChHHHH----HHH-HHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHh-cCCCEEEEecC-cHHHHHHHH
Confidence 6788888766543 223 578889998887654332 2 1 11233444444433 24799999998 788888877
Q ss_pred HHcCCCcccCCCccEEEeec--CCc
Q 003790 356 LLSRGNQKEGISIPIGIIPA--GSD 378 (795)
Q Consensus 356 L~~r~d~~~a~~iPLGIIP~--GTG 378 (795)
+... ..+|+..||. |||
T Consensus 96 ia~~------~~~p~i~VPTtagtg 114 (349)
T cd08550 96 VADR------LDKPIVIVPTIASTC 114 (349)
T ss_pred HHHH------cCCCEEEeCCccccC
Confidence 7543 2579999997 444
No 81
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=76.60 E-value=16 Score=40.85 Aligned_cols=84 Identities=21% Similarity=0.301 Sum_probs=54.8
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC------cchHHHHHHHhhhcCCCCCeEEEcCchHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS------AGHAKNLASTVDISSCPDGIICVGGDGIINEV 352 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~------~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEV 352 (795)
+|++||.-+..- +...+.+...|+.+++++.++.-.. .....++++.+.. ..|.||.+|| |.+-.+
T Consensus 24 ~~~livtd~~~~-----~~~~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~--~~d~IIaIGG-Gs~~D~ 95 (348)
T cd08175 24 KKALIVADENTY-----AAAGKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER--DTDLIIAVGS-GTINDI 95 (348)
T ss_pred CcEEEEECCcHH-----HHHHHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc--cCCEEEEECC-cHHHHH
Confidence 678888765432 1123578889999998776543221 1233445554432 4799999999 777788
Q ss_pred HHHHHcCCCcccCCCccEEEeecC
Q 003790 353 LNGLLSRGNQKEGISIPIGIIPAG 376 (795)
Q Consensus 353 vNGL~~r~d~~~a~~iPLGIIP~G 376 (795)
+-.+... ..+|+..||.=
T Consensus 96 aK~vA~~------~~~p~i~IPTT 113 (348)
T cd08175 96 TKYVSYK------TGIPYISVPTA 113 (348)
T ss_pred HHHHHHh------cCCCEEEecCc
Confidence 7777543 25899999963
No 82
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=76.36 E-value=13 Score=42.80 Aligned_cols=68 Identities=16% Similarity=0.265 Sum_probs=40.1
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe--CCc--chHHHHHHHhhhcCCCCCeEEEcCchHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT--TSA--GHAKNLASTVDISSCPDGIICVGGDGIINEV 352 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T--~~~--ghA~ela~~l~~~~~~D~IVvvGGDGTlnEV 352 (795)
+|++||.-+..-+ . ..+ +.+...|+.+|+++.++.- ..+ ....+.++.+.. ..+|.||.+||= .+-.+
T Consensus 24 ~~vlivt~~~~~~-~--g~~-~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~-~~~D~IIaiGGG-SviD~ 95 (414)
T cd08190 24 RRVCLVTDPNLAQ-L--PPV-KVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKK-GQFDAFVAVGGG-SVIDT 95 (414)
T ss_pred CeEEEEECcchhh-c--chH-HHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHh-cCCCEEEEeCCc-cHHHH
Confidence 6888888765322 1 223 4677889999998876631 111 223333333322 347999999994 44433
No 83
>PRK06756 flavodoxin; Provisional
Probab=76.13 E-value=12 Score=36.31 Aligned_cols=88 Identities=18% Similarity=0.257 Sum_probs=48.6
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEc---CchHHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVG---GDGIINEVLNG 355 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvG---GDGTlnEVvNG 355 (795)
++++|||= |..|...++. +.|...|+..|++++++........ ..+ . .+|.|+++. |+|.+...+..
T Consensus 2 mkv~IiY~--S~tGnTe~vA-~~ia~~l~~~g~~v~~~~~~~~~~~----~~~--~-~~d~vi~gspt~~~g~~p~~~~~ 71 (148)
T PRK06756 2 SKLVMIFA--SMSGNTEEMA-DHIAGVIRETENEIEVIDIMDSPEA----SIL--E-QYDGIILGAYTWGDGDLPDDFLD 71 (148)
T ss_pred ceEEEEEE--CCCchHHHHH-HHHHHHHhhcCCeEEEeehhccCCH----HHH--h-cCCeEEEEeCCCCCCCCcHHHHH
Confidence 57899994 4555665655 5777788888988877654332221 222 1 367776663 67766553333
Q ss_pred HHcCCCcccCCCccEEEeecC
Q 003790 356 LLSRGNQKEGISIPIGIIPAG 376 (795)
Q Consensus 356 L~~r~d~~~a~~iPLGIIP~G 376 (795)
++..-........+++++-.|
T Consensus 72 fl~~l~~~~l~~k~~~~fgt~ 92 (148)
T PRK06756 72 FYDAMDSIDLTGKKAAVFGSC 92 (148)
T ss_pred HHHHHhcCCCCCCEEEEEeCC
Confidence 332100011234566665443
No 84
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=75.68 E-value=18 Score=40.99 Aligned_cols=99 Identities=24% Similarity=0.255 Sum_probs=55.3
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE--eCCc--chHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK--TTSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~--T~~~--ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
+|++||..+..-+ ...+ +.+...|+++|+++.++. ...+ ....+.++.+.. ...|.||++|| |.+-.+..
T Consensus 29 ~~~livt~~~~~~---~~~~-~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~d~IIaiGG-GsviD~AK 102 (377)
T cd08188 29 KKVLLVSDPGVIK---AGWV-DRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLE-NGCDVIIAVGG-GSPIDCAK 102 (377)
T ss_pred CeEEEEeCcchhh---CccH-HHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHh-cCCCEEEEeCC-chHHHHHH
Confidence 6888887654321 1123 568889999998887653 1111 223344433332 34799999999 55555553
Q ss_pred H---HHcCCC---------cccCCCccEEEeec--CCcchhhh
Q 003790 355 G---LLSRGN---------QKEGISIPIGIIPA--GSDNSLVW 383 (795)
Q Consensus 355 G---L~~r~d---------~~~a~~iPLGIIP~--GTGNdfAr 383 (795)
. ++..+. ......+|+..||. |||--...
T Consensus 103 ~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~gTgSE~t~ 145 (377)
T cd08188 103 GIGIVASNGGHILDFEGVDKITRPLPPLICIPTTAGSGADVSQ 145 (377)
T ss_pred HHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCCccccccCC
Confidence 2 222110 00112478999997 77654443
No 85
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=74.82 E-value=2.1 Score=46.28 Aligned_cols=32 Identities=16% Similarity=0.027 Sum_probs=26.5
Q ss_pred eeeeeec-cCCCCCCcccCCCCCcCCCCCCCCCCCCCCCcccC
Q 003790 494 LYTDIMR-KSKNEGMPRASSLSSIDSIMTPSRMSGGDPDTTCS 535 (795)
Q Consensus 494 ~~v~V~N-r~~GgG~~iaP~A~~~d~~~t~~~~~DG~Ldvv~~ 535 (795)
.++.++| +++|||+.++|.+++ +||.||+++.
T Consensus 192 ~~~~v~n~~~~gg~~~~~p~a~~----------~DG~l~v~~v 224 (293)
T TIGR00147 192 VVFLVGNGRQAGGGQKLAPDASI----------NDGLLDLRIF 224 (293)
T ss_pred EEEEEeCCcccCCCcccCCcccc----------CCCeeEEEEE
Confidence 4567789 999999999999884 7899997764
No 86
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=74.40 E-value=11 Score=42.09 Aligned_cols=91 Identities=18% Similarity=0.240 Sum_probs=58.0
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe-CCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT-TSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLL 357 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T-~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~ 357 (795)
+|++||..+..- .. +.+.++..|+..++.+.++.- .......+++..+... .+|.||.+|| |++..+.-.+.
T Consensus 24 ~~~liv~d~~~~----~~-~~~~l~~~L~~~~~~~~~~~~~p~~~~v~~~~~~~~~~-~~D~iIavGG-Gs~~D~aK~ia 96 (347)
T cd08172 24 KRPLIVTGPRSW----AA-AKPYLPESLAAGEAFVLRYDGECSEENIERLAAQAKEN-GADVIIGIGG-GKVLDTAKAVA 96 (347)
T ss_pred CeEEEEECHHHH----HH-HHHHHHHHHhcCeEEEEEeCCCCCHHHHHHHHHHHHhc-CCCEEEEeCC-cHHHHHHHHHH
Confidence 789999987762 22 335677777666666544421 2233444555444333 4799999998 88888888775
Q ss_pred cCCCcccCCCccEEEeec--CCcchhh
Q 003790 358 SRGNQKEGISIPIGIIPA--GSDNSLV 382 (795)
Q Consensus 358 ~r~d~~~a~~iPLGIIP~--GTGNdfA 382 (795)
... .+|+..||. |||-...
T Consensus 97 ~~~------~~p~i~VPTT~gtgse~t 117 (347)
T cd08172 97 DRL------GVPVITVPTLAATCAAWT 117 (347)
T ss_pred HHh------CCCEEEecCccccCcccc
Confidence 432 579999996 5554443
No 87
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=74.03 E-value=20 Score=40.74 Aligned_cols=99 Identities=12% Similarity=0.181 Sum_probs=55.4
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC----cchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS----AGHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~----~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
+|++|+.-+.. +....+ +.+...|+++|+.+.++.-.. .....+.++.+.. ...|.||.+||=-.+ .+..
T Consensus 32 ~~~livt~~~~---~~~g~~-~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~-~~~D~IiaiGGGS~i-D~AK 105 (383)
T PRK09860 32 TRTLIVTDNML---TKLGMA-GDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKE-NNCDSVISLGGGSPH-DCAK 105 (383)
T ss_pred CEEEEEcCcch---hhCccH-HHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHH-cCCCEEEEeCCchHH-HHHH
Confidence 67888865422 112234 478889999999876653221 1233344433332 347999999994443 3333
Q ss_pred HH---HcCCC---------cccCCCccEEEeec--CCcchhhh
Q 003790 355 GL---LSRGN---------QKEGISIPIGIIPA--GSDNSLVW 383 (795)
Q Consensus 355 GL---~~r~d---------~~~a~~iPLGIIP~--GTGNdfAr 383 (795)
.+ +..+. ......+|+..||. |||--..+
T Consensus 106 ~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTagTGSE~t~ 148 (383)
T PRK09860 106 GIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEMTR 148 (383)
T ss_pred HHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCCcchhccCc
Confidence 32 21110 00113579999997 77766554
No 88
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=71.36 E-value=31 Score=39.22 Aligned_cols=98 Identities=22% Similarity=0.359 Sum_probs=57.0
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC----cchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS----AGHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~----~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
+|++||..+...+ ...+ +.+...|+.+|+++.++.-.. .....+.++.+.. ..+|.||.+|| |.+-.++-
T Consensus 23 ~~~livt~~~~~~---~~~~-~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~-~~~D~IIaiGG-GS~iD~aK 96 (386)
T cd08191 23 SRALIVTDERMAG---TPVF-AELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAAR-AGPDVIIGLGG-GSCIDLAK 96 (386)
T ss_pred CeEEEEECcchhh---cchH-HHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHh-cCCCEEEEeCC-chHHHHHH
Confidence 7899998765543 1234 568889999999887663221 1122333333322 34799999998 66666655
Q ss_pred HHH---cCCC---------cccCCCccEEEeec--CCcchhh
Q 003790 355 GLL---SRGN---------QKEGISIPIGIIPA--GSDNSLV 382 (795)
Q Consensus 355 GL~---~r~d---------~~~a~~iPLGIIP~--GTGNdfA 382 (795)
.+. ..+. ......+|+..||. |||--..
T Consensus 97 ~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t 138 (386)
T cd08191 97 IAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTTAGTGSEVT 138 (386)
T ss_pred HHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCCCcchhhhC
Confidence 542 2110 00112579999996 5654444
No 89
>PRK10586 putative oxidoreductase; Provisional
Probab=70.67 E-value=28 Score=39.37 Aligned_cols=89 Identities=21% Similarity=0.318 Sum_probs=56.1
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC-cchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS-AGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLL 357 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~-~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~ 357 (795)
+|++||.-+++ .+.....+...|+++++.+..+.-.. ..+..++++... ...|.||.+|| |.+..+..++.
T Consensus 35 ~~~lvv~g~~~-----~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~v~~l~~~~~--~~~d~iiavGG-Gs~iD~aK~~a 106 (362)
T PRK10586 35 SRAVWIYGERA-----IAAAQPYLPPAFELPGAKHILFRGHCSESDVAQLAAASG--DDRQVVIGVGG-GALLDTAKALA 106 (362)
T ss_pred CeEEEEEChHH-----HHHHHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHhc--cCCCEEEEecC-cHHHHHHHHHH
Confidence 67888865432 23333566778999998775443222 233445544432 23699999988 77777777776
Q ss_pred cCCCcccCCCccEEEeecCCcchh
Q 003790 358 SRGNQKEGISIPIGIIPAGSDNSL 381 (795)
Q Consensus 358 ~r~d~~~a~~iPLGIIP~GTGNdf 381 (795)
... .+|+..||.=.+++-
T Consensus 107 ~~~------~~p~i~vPT~a~t~s 124 (362)
T PRK10586 107 RRL------GLPFVAIPTIAATCA 124 (362)
T ss_pred hhc------CCCEEEEeCCccccc
Confidence 542 589999997544443
No 90
>PLN02834 3-dehydroquinate synthase
Probab=70.41 E-value=20 Score=41.67 Aligned_cols=88 Identities=16% Similarity=0.181 Sum_probs=52.8
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEE---Ee-----CCcchHHHHHHHhhhcC--CCCCeEEEcCch
Q 003790 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVV---KT-----TSAGHAKNLASTVDISS--CPDGIICVGGDG 347 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~---~T-----~~~ghA~ela~~l~~~~--~~D~IVvvGGDG 347 (795)
.+|++||.++... +.+.+.+...|+.+|+++.++ .. .......++++.+...+ ..|.||++|| |
T Consensus 100 g~rvlIVtD~~v~-----~~~~~~v~~~L~~~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~~~dr~~~VIAiGG-G 173 (433)
T PLN02834 100 GKRVLVVTNETVA-----PLYLEKVVEALTAKGPELTVESVILPDGEKYKDMETLMKVFDKALESRLDRRCTFVALGG-G 173 (433)
T ss_pred CCEEEEEECccHH-----HHHHHHHHHHHHhcCCceEEEEEEecCCcCCCCHHHHHHHHHHHHhcCCCcCcEEEEECC-h
Confidence 3789999977653 235567888999999876552 11 12233334444433221 1248888887 7
Q ss_pred HHHHHHHHHHcCCCcccCCCccEEEeec
Q 003790 348 IINEVLNGLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 348 TlnEVvNGL~~r~d~~~a~~iPLGIIP~ 375 (795)
++..++..+..... ..+|+..||.
T Consensus 174 sv~D~ak~~A~~y~----rgiplI~VPT 197 (433)
T PLN02834 174 VIGDMCGFAAASYQ----RGVNFVQIPT 197 (433)
T ss_pred HHHHHHHHHHHHhc----CCCCEEEECC
Confidence 77777765421110 1589999998
No 91
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=70.41 E-value=20 Score=40.24 Aligned_cols=95 Identities=21% Similarity=0.340 Sum_probs=56.1
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe--C--CcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT--T--SAGHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T--~--~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
+|++||..+.+-+ . ..+ +.+...|+..++++.++.- . ......++++.+.. ..+|.||.+|| |++-.+.-
T Consensus 24 ~~~lvv~~~~~~~-~--~~~-~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~d~IiaiGG-Gs~~D~AK 97 (370)
T cd08551 24 RKALIVTDPGLVK-T--GVL-DKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYRE-EGCDGVIAVGG-GSVLDTAK 97 (370)
T ss_pred CeEEEEeCcchhh-C--ccH-HHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHh-cCCCEEEEeCC-chHHHHHH
Confidence 6899998876654 1 223 4677889988888765531 1 22334455555433 34799999999 55555554
Q ss_pred HH---HcCCC--c-------ccCCCccEEEeec--CCcc
Q 003790 355 GL---LSRGN--Q-------KEGISIPIGIIPA--GSDN 379 (795)
Q Consensus 355 GL---~~r~d--~-------~~a~~iPLGIIP~--GTGN 379 (795)
.+ +..+. | .....+|+..||. |||-
T Consensus 98 ~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtgs 136 (370)
T cd08551 98 AIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGTGS 136 (370)
T ss_pred HHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcchh
Confidence 43 21110 0 0112589999998 5553
No 92
>PRK13337 putative lipid kinase; Reviewed
Probab=70.03 E-value=2.9 Score=45.62 Aligned_cols=32 Identities=16% Similarity=-0.070 Sum_probs=26.9
Q ss_pred eeeeeec-cCCCCCCcccCCCCCcCCCCCCCCCCCCCCCcccC
Q 003790 494 LYTDIMR-KSKNEGMPRASSLSSIDSIMTPSRMSGGDPDTTCS 535 (795)
Q Consensus 494 ~~v~V~N-r~~GgG~~iaP~A~~~d~~~t~~~~~DG~Ldvv~~ 535 (795)
.++.++| +++|||+.++|+|+ ++||.||+++.
T Consensus 191 ~~~~v~n~~~~gg~~~~~p~a~----------~~DG~ldv~iv 223 (304)
T PRK13337 191 MLFLLGLTNSVGGFEKLAPDAS----------LDDGYFDLIIV 223 (304)
T ss_pred EEEEEEcCcccCCccccCCccc----------CCCCeEEEEEE
Confidence 3677889 99999999999988 47899997764
No 93
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=69.99 E-value=16 Score=41.22 Aligned_cols=84 Identities=21% Similarity=0.299 Sum_probs=53.6
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC--Cc-chHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT--SA-GHAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~--~~-ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNG 355 (795)
+|++||..+..- .. +.+.+...|+.+|+++.+.... .. ....++++.+.. ...|.||.+|| |++..+.-.
T Consensus 30 ~~~livtd~~~~----~~-~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~-~~~d~IIavGG-Gsv~D~aK~ 102 (366)
T PRK09423 30 KRALVIADEFVL----GI-VGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEE-NGCDVVIGIGG-GKTLDTAKA 102 (366)
T ss_pred CEEEEEEChhHH----HH-HHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHh-cCCCEEEEecC-hHHHHHHHH
Confidence 788998865542 12 3467888999998876432221 11 223334443322 24799999999 788887777
Q ss_pred HHcCCCcccCCCccEEEeec
Q 003790 356 LLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 356 L~~r~d~~~a~~iPLGIIP~ 375 (795)
+... ..+|+..||.
T Consensus 103 iA~~------~~~p~i~IPT 116 (366)
T PRK09423 103 VADY------LGVPVVIVPT 116 (366)
T ss_pred HHHH------cCCCEEEeCC
Confidence 6543 2589999997
No 94
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=69.64 E-value=26 Score=38.63 Aligned_cols=89 Identities=18% Similarity=0.250 Sum_probs=56.2
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC----CcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHH
Q 003790 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT----SAGHAKNLASTVDISSCPDGIICVGGDGIINEVL 353 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~----~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVv 353 (795)
.+|++||..+..-+ . +.+.+...|+++ +++.++.-. ......++++.+.. ...|.||.+|| |++..++
T Consensus 23 ~~~~liv~~~~~~~----~-~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~d~IIaiGG-Gs~~D~a 94 (332)
T cd07766 23 FDRALVVSDEGVVK----G-VGEKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARA-AEVDAVIAVGG-GSTLDTA 94 (332)
T ss_pred CCeEEEEeCCchhh----h-HHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHh-cCcCEEEEeCC-chHHHHH
Confidence 36899998766543 2 235678888887 776655321 22244555555543 34799999987 7777777
Q ss_pred HHHHcCCCcccCCCccEEEeec--CCc
Q 003790 354 NGLLSRGNQKEGISIPIGIIPA--GSD 378 (795)
Q Consensus 354 NGL~~r~d~~~a~~iPLGIIP~--GTG 378 (795)
-.+...-. ..+|+..||. |||
T Consensus 95 K~ia~~~~----~~~p~i~iPTt~~tg 117 (332)
T cd07766 95 KAVAALLN----RGLPIIIVPTTAATG 117 (332)
T ss_pred HHHHHHhc----CCCCEEEEeCCCchh
Confidence 66543311 2589999997 554
No 95
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=68.59 E-value=26 Score=39.51 Aligned_cols=96 Identities=19% Similarity=0.358 Sum_probs=54.3
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe--C--CcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT--T--SAGHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T--~--~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
+|++||.-+.--+ ...+ +.+...|+++++++.++.- . ......++++.+.. ..+|.||.+|| |++..+.-
T Consensus 27 ~~~livt~~~~~~---~~~~-~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~IIaiGG-Gs~iD~aK 100 (376)
T cd08193 27 KRVLVVTDPGILK---AGLI-DPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARA-AGADGVIGFGG-GSSMDVAK 100 (376)
T ss_pred CeEEEEcCcchhh---CccH-HHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHh-cCCCEEEEeCC-chHHHHHH
Confidence 6788887543211 1234 4677899999988865521 1 12233444444433 34799999999 66666554
Q ss_pred HHHc---CCC---------cccCCCccEEEeec--CCcch
Q 003790 355 GLLS---RGN---------QKEGISIPIGIIPA--GSDNS 380 (795)
Q Consensus 355 GL~~---r~d---------~~~a~~iPLGIIP~--GTGNd 380 (795)
.+.. .+. ......+|+..||. |||--
T Consensus 101 ~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagtgSe 140 (376)
T cd08193 101 LVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTAGTGSE 140 (376)
T ss_pred HHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCCcchHh
Confidence 4321 110 00112579999997 45533
No 96
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=67.93 E-value=24 Score=39.12 Aligned_cols=94 Identities=15% Similarity=0.221 Sum_probs=53.0
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE--eCC--cchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK--TTS--AGHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~--T~~--~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
+|++||..+...+. ..+ +.+...|+.+ +++.++. ... .....++++.+.. ..+|.||.+|| |.+-.+.-
T Consensus 23 ~~~lvv~~~~~~~~---g~~-~~v~~~l~~~-~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~d~IiaiGG-Gs~~D~aK 95 (332)
T cd08180 23 KRVLIVTDPFMVKS---GML-DKVTDHLDSS-IEVEIFSDVVPDPPIEVVAKGIKKFLD-FKPDIVIALGG-GSAIDAAK 95 (332)
T ss_pred CeEEEEeCchhhhC---ccH-HHHHHHHHhc-CcEEEeCCCCCCcCHHHHHHHHHHHHh-cCCCEEEEECC-chHHHHHH
Confidence 78999987644321 123 4677788876 6665542 111 1222334443332 34799999999 55555555
Q ss_pred HH---HcCCCcccCCCccEEEeec--CCcchh
Q 003790 355 GL---LSRGNQKEGISIPIGIIPA--GSDNSL 381 (795)
Q Consensus 355 GL---~~r~d~~~a~~iPLGIIP~--GTGNdf 381 (795)
++ ..... ....+|+..||. |||--.
T Consensus 96 a~a~~~~~~~--~~~~~p~i~VPTtagtgse~ 125 (332)
T cd08180 96 AIIYFAKKLG--KKKKPLFIAIPTTSGTGSEV 125 (332)
T ss_pred HHHHHHhCCC--CCCCCCEEEeCCCCcchHhh
Confidence 43 22210 112589999996 666433
No 97
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=67.40 E-value=1.1e+02 Score=37.09 Aligned_cols=137 Identities=15% Similarity=0.223 Sum_probs=84.2
Q ss_pred EEEEEeecCCCCCccccccCCeeeEeEEEEecCCHHHHHHHHHhhhcccccccccCCCcccccccccccCCCCCCCcccc
Q 003790 193 FTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTTEEAIQWVGGFADQQCFVNCLPHPLVSSKKQASAELYPTDTPPELI 272 (795)
Q Consensus 193 ~~i~~y~~~k~~~g~~~~~~~~r~~~~~~f~~~~~~~a~~W~~~~~~~~~~i~~l~~p~~~~~~~~~~~~~~~~~~~~~~ 272 (795)
..+|+|..... +..|+--.+.+...+.+++.+-...+.+. +...+ +..+
T Consensus 359 ~~v~~ygk~~~--------r~~rkmGhV~~~g~~~~e~~~~~~~~~~~---~~~~~------------~~~~-------- 407 (577)
T PLN02948 359 ASVHWYGKPEM--------RKQRKMGHITVVGPSAAEVEARLDQLLAE---ESADP------------DALP-------- 407 (577)
T ss_pred CEEEEecCCCC--------CCCCeeEEEEEecCCHHHHHHHHHHHHhh---hccCC------------CCCC--------
Confidence 46777753221 23466667778888888776655543210 11110 1111
Q ss_pred ccCCCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe---CCcchHHHHHHHhhhcCCCC-CeEEEcCchH
Q 003790 273 FRCKSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT---TSAGHAKNLASTVDISSCPD-GIICVGGDGI 348 (795)
Q Consensus 273 ~~~~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T---~~~ghA~ela~~l~~~~~~D-~IVvvGGDGT 348 (795)
....++.||. |......+. +.+...|+..|++|++.+. ..+.+..++++++...+ .+ .|+++|+.+-
T Consensus 408 ---~~~~~v~i~~----gs~sd~~~~-~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~~~~~-~~v~i~~ag~~~~ 478 (577)
T PLN02948 408 ---KGTPLVGIIM----GSDSDLPTM-KDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRG-LQVIIAGAGGAAH 478 (577)
T ss_pred ---CCCCeEEEEE----CchhhHHHH-HHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHHHHHCC-CCEEEEEcCcccc
Confidence 1335577776 433344445 4677799999999988764 33556677777775433 45 4677899999
Q ss_pred HHHHHHHHHcCCCcccCCCccEEEeecCCc
Q 003790 349 INEVLNGLLSRGNQKEGISIPIGIIPAGSD 378 (795)
Q Consensus 349 lnEVvNGL~~r~d~~~a~~iPLGIIP~GTG 378 (795)
|--|+.++. .+|+-=+|..++
T Consensus 479 l~~~~a~~t---------~~pvi~vp~~~~ 499 (577)
T PLN02948 479 LPGMVASMT---------PLPVIGVPVKTS 499 (577)
T ss_pred chHHHhhcc---------CCCEEEcCCCCC
Confidence 999998874 357767777555
No 98
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=67.14 E-value=30 Score=39.10 Aligned_cols=99 Identities=21% Similarity=0.247 Sum_probs=55.7
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe--CCc--chHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT--TSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T--~~~--ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
+|++||..+.+-+.. ..+ +.+...|+.+|+++.++.- ..+ ....+.++.+.. ..+|.||.+|| |.+-.+.-
T Consensus 24 ~r~livt~~~~~~~~--g~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~IIavGG-GSviD~AK 98 (375)
T cd08179 24 KKAFIVTGGGSMKKF--GFL-DKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMRE-FEPDWIIALGG-GSPIDAAK 98 (375)
T ss_pred CeEEEEeCchHHHhC--ChH-HHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHh-cCCCEEEEeCC-ccHHHHHH
Confidence 678888765443222 223 5678899999998876532 122 223344444432 34799999999 44444444
Q ss_pred HH---HcCCC--c----------ccCCCccEEEeec--CCcchhh
Q 003790 355 GL---LSRGN--Q----------KEGISIPIGIIPA--GSDNSLV 382 (795)
Q Consensus 355 GL---~~r~d--~----------~~a~~iPLGIIP~--GTGNdfA 382 (795)
.+ +..+. . .....+|+..||. |||--..
T Consensus 99 ~ia~~~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTtagTGSE~t 143 (375)
T cd08179 99 AMWIFYEYPELTFEDIVKPFTLPELRNKARFCAIPSTSGTATEVT 143 (375)
T ss_pred HHHHHHhCCCcCHHHHhccccccccCCCCCEEEeCCCCchhHhhC
Confidence 33 22211 0 0012479999997 6665444
No 99
>PRK13059 putative lipid kinase; Reviewed
Probab=66.29 E-value=3.8 Score=44.68 Aligned_cols=31 Identities=10% Similarity=0.035 Sum_probs=24.6
Q ss_pred eeeeeec-cCCCCCCcccCCCCCcCCCCCCCCCCCCCCCcccC
Q 003790 494 LYTDIMR-KSKNEGMPRASSLSSIDSIMTPSRMSGGDPDTTCS 535 (795)
Q Consensus 494 ~~v~V~N-r~~GgG~~iaP~A~~~d~~~t~~~~~DG~Ldvv~~ 535 (795)
.++.++| +|+| |++++|+|++ +||.||+++.
T Consensus 190 ~~~~v~N~~~~G-g~~~~p~a~~----------~DG~Ldv~i~ 221 (295)
T PRK13059 190 YLMLVFNGQTAG-NFNLAYKAEV----------DDGLLDVIII 221 (295)
T ss_pred EEEEEEcCcccc-CcccCCcccC----------CCCeEEEEEE
Confidence 4667899 8776 6799999984 7899997764
No 100
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=65.91 E-value=19 Score=33.29 Aligned_cols=59 Identities=17% Similarity=0.290 Sum_probs=41.1
Q ss_pred eeeecceeeeccc-------ccCCcceEEEEecCC-c---c-eEEEEEeecCCCCCccccccCCeeeEeEEEEecCCHHH
Q 003790 162 AKLTSKALVWGSH-------VLPLDDIVSVSYNNG-L---R-HFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTTEE 229 (795)
Q Consensus 162 ~~~~~~~~~~~~~-------~l~l~d~~~~~~~~~-~---~-~~~i~~y~~~k~~~g~~~~~~~~r~~~~~~f~~~~~~~ 229 (795)
-.||+..|.|.+. .|+|+++.+|..-.. . . -|+|- +| .++|-+.|+|.+|
T Consensus 26 F~Lt~~~L~Y~k~~~~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqiv-t~-----------------~r~~yi~a~s~~E 87 (98)
T cd01244 26 FQLTTTHLSWAKDVQCKKSALIKLAAIKGTEPLSDKSFVNVDIITIV-CE-----------------DDTMQLQFEAPVE 87 (98)
T ss_pred EEECCCEEEEECCCCCceeeeEEccceEEEEEcCCcccCCCceEEEE-eC-----------------CCeEEEECCCHHH
Confidence 4577777877644 578899998874332 1 1 24442 12 1379999999999
Q ss_pred HHHHHHhhh
Q 003790 230 AIQWVGGFA 238 (795)
Q Consensus 230 a~~W~~~~~ 238 (795)
.++|..+|.
T Consensus 88 ~~~Wi~al~ 96 (98)
T cd01244 88 ATDWLNALE 96 (98)
T ss_pred HHHHHHHHh
Confidence 999999984
No 101
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=64.53 E-value=39 Score=38.02 Aligned_cols=72 Identities=15% Similarity=0.265 Sum_probs=43.4
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE--eCCc--chHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK--TTSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~--T~~~--ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
+|++|+..+..-+ ...+ ++|...|+++|+++.++. ...+ ....+.++.+.. ...|.||.+|| |++..++-
T Consensus 25 ~~~liv~~~~~~~---~~~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~d~IIaiGG-GSviD~aK 98 (370)
T cd08192 25 KRPLIVTDPGLAA---LGLV-ARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRA-GGCDGVIAFGG-GSALDLAK 98 (370)
T ss_pred CeEEEEcCcchhh---CccH-HHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHh-cCCCEEEEeCC-chHHHHHH
Confidence 6888887765421 1234 468889999999886652 1111 123334444332 34799999999 66666555
Q ss_pred HH
Q 003790 355 GL 356 (795)
Q Consensus 355 GL 356 (795)
.+
T Consensus 99 ~i 100 (370)
T cd08192 99 AV 100 (370)
T ss_pred HH
Confidence 43
No 102
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=62.84 E-value=51 Score=33.09 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=49.1
Q ss_pred CCCCchhhHHHhHHHHHHHcCCeEEEEEeC---CcchHHHHHHHhhhcCCCC-CeEEEcCchHHHHHHHHHHcCCCcccC
Q 003790 290 GRGRSSKVFHDIVEPIFKLAGFKLEVVKTT---SAGHAKNLASTVDISSCPD-GIICVGGDGIINEVLNGLLSRGNQKEG 365 (795)
Q Consensus 290 G~Gka~ki~~~~I~plL~~aGi~~~v~~T~---~~ghA~ela~~l~~~~~~D-~IVvvGGDGTlnEVvNGL~~r~d~~~a 365 (795)
|......+. +++...|++.|+.|++.... .++...++++++... ..+ .|.++|+++-|--|+.++..
T Consensus 8 gs~SD~~~~-~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~-~~~viIa~AG~~a~Lpgvva~~t~------- 78 (150)
T PF00731_consen 8 GSTSDLPIA-EEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEAR-GADVIIAVAGMSAALPGVVASLTT------- 78 (150)
T ss_dssp SSGGGHHHH-HHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTT-TESEEEEEEESS--HHHHHHHHSS-------
T ss_pred CCHHHHHHH-HHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccC-CCEEEEEECCCcccchhhheeccC-------
Confidence 444444445 57788999999999988764 445567777777542 345 46788999999999999853
Q ss_pred CCccEEEeecCCc
Q 003790 366 ISIPIGIIPAGSD 378 (795)
Q Consensus 366 ~~iPLGIIP~GTG 378 (795)
.|+--+|.-++
T Consensus 79 --~PVIgvP~~~~ 89 (150)
T PF00731_consen 79 --LPVIGVPVSSG 89 (150)
T ss_dssp --S-EEEEEE-ST
T ss_pred --CCEEEeecCcc
Confidence 35544577554
No 103
>PRK06703 flavodoxin; Provisional
Probab=61.49 E-value=42 Score=32.58 Aligned_cols=83 Identities=17% Similarity=0.236 Sum_probs=48.4
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEc---CchHHHH----
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVG---GDGIINE---- 351 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvG---GDGTlnE---- 351 (795)
++++|||= |..|...++. +.|...|...|++++++....... ..+ . .+|.||++. |+|-+..
T Consensus 2 mkv~IiY~--S~tGnT~~iA-~~ia~~l~~~g~~v~~~~~~~~~~-----~~l--~-~~d~viigspt~~~g~~p~~~~~ 70 (151)
T PRK06703 2 AKILIAYA--SMSGNTEDIA-DLIKVSLDAFDHEVVLQEMDGMDA-----EEL--L-AYDGIILGSYTWGDGDLPYEAED 70 (151)
T ss_pred CeEEEEEE--CCCchHHHHH-HHHHHHHHhcCCceEEEehhhCCH-----HHH--h-cCCcEEEEECCCCCCcCcHHHHH
Confidence 57888884 4555665655 577778888998888776543221 122 2 368777755 6775543
Q ss_pred HHHHHHcCCCcccCCCccEEEeecC
Q 003790 352 VLNGLLSRGNQKEGISIPIGIIPAG 376 (795)
Q Consensus 352 VvNGL~~r~d~~~a~~iPLGIIP~G 376 (795)
++..|.... ....+++++-+|
T Consensus 71 f~~~l~~~~----l~~k~~~vfg~g 91 (151)
T PRK06703 71 FHEDLENID----LSGKKVAVFGSG 91 (151)
T ss_pred HHHHHhcCC----CCCCEEEEEccC
Confidence 333332221 224567777444
No 104
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=61.35 E-value=18 Score=40.53 Aligned_cols=95 Identities=21% Similarity=0.332 Sum_probs=55.9
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE--eCCc--chHHHHHHHhhhcCCCCCeEEEcCchHHHH--H
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK--TTSA--GHAKNLASTVDISSCPDGIICVGGDGIINE--V 352 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~--T~~~--ghA~ela~~l~~~~~~D~IVvvGGDGTlnE--V 352 (795)
.|++||..+ +-... ..+ +.+...|+++++++.++. ...+ .+..++++.+... ++|.||.+||=-++.- +
T Consensus 22 gr~lvVt~~-~~~~~--~~~-~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~-~~D~IIaiGGGS~~D~aK~ 96 (366)
T PF00465_consen 22 GRVLVVTDP-SLSKS--GLV-DRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKF-GADCIIAIGGGSVMDAAKA 96 (366)
T ss_dssp TEEEEEEEH-HHHHH--THH-HHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHT-TSSEEEEEESHHHHHHHHH
T ss_pred CCEEEEECc-hHHhC--ccH-HHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhc-CCCEEEEcCCCCcCcHHHH
Confidence 399999988 43222 234 578889999999987665 2222 2334444444333 4799999999655432 3
Q ss_pred HHHHHcCCCc----------ccCCCccEEEeecCCc
Q 003790 353 LNGLLSRGNQ----------KEGISIPIGIIPAGSD 378 (795)
Q Consensus 353 vNGL~~r~d~----------~~a~~iPLGIIP~GTG 378 (795)
+..++..+.. .....+|+..||.-.|
T Consensus 97 va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~g 132 (366)
T PF00465_consen 97 VALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAG 132 (366)
T ss_dssp HHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSS
T ss_pred HHhhccCCCcHHHHHhhccccccCCCcEEEeeCCcc
Confidence 4444443211 0112379999998333
No 105
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=61.02 E-value=49 Score=33.61 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=50.4
Q ss_pred EEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC-cchHHHHHHHhhhcCCCCCeEEEcCchHH-HHHHHHHHc
Q 003790 281 MLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS-AGHAKNLASTVDISSCPDGIICVGGDGII-NEVLNGLLS 358 (795)
Q Consensus 281 llVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~-~ghA~ela~~l~~~~~~D~IVvvGGDGTl-nEVvNGL~~ 358 (795)
+.+|+ |.....-...++ +.++..+++.|+++.++.+.. .....+.++++... .+|+||+++.+... .+.+..|..
T Consensus 2 ig~i~-p~~~~~~~~~~~-~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~-~vdgvi~~~~~~~~~~~~~~~l~~ 78 (267)
T cd01536 2 IGLVV-PSLNNPFWQAMN-KGAEAAAKELGVELIVLDAQNDVSKQIQQIEDLIAQ-GVDGIIISPVDSAALTPALKKANA 78 (267)
T ss_pred EEEEe-ccccCHHHHHHH-HHHHHHHHhcCceEEEECCCCCHHHHHHHHHHHHHc-CCCEEEEeCCCchhHHHHHHHHHH
Confidence 44544 543222222333 567778888899988887764 33445566665443 47999998877543 345666654
Q ss_pred CCCcccCCCccEEEeec
Q 003790 359 RGNQKEGISIPIGIIPA 375 (795)
Q Consensus 359 r~d~~~a~~iPLGIIP~ 375 (795)
. ++|+-.+-.
T Consensus 79 ~-------~ip~V~~~~ 88 (267)
T cd01536 79 A-------GIPVVTVDS 88 (267)
T ss_pred C-------CCcEEEecC
Confidence 3 466655533
No 106
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=60.90 E-value=77 Score=32.88 Aligned_cols=65 Identities=18% Similarity=0.226 Sum_probs=40.5
Q ss_pred HhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEee
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP 374 (795)
+.++..+++.|+++.++.+... ....+.+.+. ...+|+||+++.+..- ..++.+... ++|+-++-
T Consensus 30 ~gi~~~~~~~g~~~~v~~~~~~-~~~~~~~~l~-~~~~dgiii~~~~~~~-~~~~~~~~~-------~ipvV~~~ 94 (275)
T cd06295 30 GGIADALAERGYDLLLSFVSSP-DRDWLARYLA-SGRADGVILIGQHDQD-PLPERLAET-------GLPFVVWG 94 (275)
T ss_pred HHHHHHHHHcCCEEEEEeCCch-hHHHHHHHHH-hCCCCEEEEeCCCCCh-HHHHHHHhC-------CCCEEEEC
Confidence 4577888889999887766544 3334444333 2358999998876542 345555433 47777664
No 107
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=60.48 E-value=5 Score=47.11 Aligned_cols=30 Identities=17% Similarity=-0.005 Sum_probs=25.6
Q ss_pred eeeec-cCCCCCCcccCCCCCcCCCCCCCCCCCCCCCcccC
Q 003790 496 TDIMR-KSKNEGMPRASSLSSIDSIMTPSRMSGGDPDTTCS 535 (795)
Q Consensus 496 v~V~N-r~~GgG~~iaP~A~~~d~~~t~~~~~DG~Ldvv~~ 535 (795)
+.++| +++|+|+.++|+|+ ++||.||+++.
T Consensus 358 v~v~N~~~~Ggg~~iaP~A~----------l~DG~LDlviv 388 (481)
T PLN02958 358 VWLHNVPWGGEDTLAAPDAK----------FSDGYLDLILI 388 (481)
T ss_pred EeeccCcccCCCcccCCccc----------CCCCeEEEEEE
Confidence 44899 99999999999998 47899997764
No 108
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=59.97 E-value=46 Score=35.11 Aligned_cols=39 Identities=21% Similarity=0.160 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhH--HHHHHHcCCeEEEEEeC
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIV--EPIFKLAGFKLEVVKTT 319 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I--~plL~~aGi~~~v~~T~ 319 (795)
+|++||+-..+-- .+.... +.+ ...|+++|+++++...+
T Consensus 2 kkVlills~~~~~-dG~e~~-E~~~P~~~L~~aG~~V~~aSp~ 42 (217)
T PRK11780 2 KKIAVILSGCGVY-DGSEIH-EAVLTLLALDRAGAEAVCFAPD 42 (217)
T ss_pred CEEEEEEccCCCC-CCEehh-HHHHHHHHHHHCCCEEEEEeCC
Confidence 5788888532221 111111 222 34788999999887653
No 109
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=58.88 E-value=45 Score=39.81 Aligned_cols=87 Identities=16% Similarity=0.240 Sum_probs=52.5
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc------hHHHHHHHhhhcC--CCCCeEEEcCchHH
Q 003790 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG------HAKNLASTVDISS--CPDGIICVGGDGII 349 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g------hA~ela~~l~~~~--~~D~IVvvGGDGTl 349 (795)
..++++|+..... . +.+.+...|+.+|+.+.......+. ...++.+.+...+ ..|.||++|| |++
T Consensus 209 g~k~~iV~d~~v~-----~-~~~~l~~~L~~~g~~v~~~v~p~~E~~ksl~~v~~~~~~l~~~~~~r~D~IIAIGG-Gsv 281 (542)
T PRK14021 209 PVKVALIHTQPVQ-----R-HSDRARTLLRQGGYEVSDIVIPDAEAGKTIEVANGIWQRLGNEGFTRSDAIVGLGG-GAA 281 (542)
T ss_pred CCeEEEEECccHH-----H-HHHHHHHHHHhCCCceEEEEeCCCcccCCHHHHHHHHHHHHhcCCCCCcEEEEEcC-hHH
Confidence 3577777765431 2 3367888999998865443333332 2233333332221 3688998988 888
Q ss_pred HHHHHHHHcCCCcccCCCccEEEeec
Q 003790 350 NEVLNGLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 350 nEVvNGL~~r~d~~~a~~iPLGIIP~ 375 (795)
..++-.+...-. ..+|+..||.
T Consensus 282 ~D~AKfvA~~y~----rGi~~i~vPT 303 (542)
T PRK14021 282 TDLAGFVAATWM----RGIRYVNCPT 303 (542)
T ss_pred HHHHHHHHHHHH----cCCCEEEeCC
Confidence 888777653110 1689999986
No 110
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=58.17 E-value=13 Score=36.59 Aligned_cols=45 Identities=20% Similarity=0.426 Sum_probs=29.0
Q ss_pred HhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchH
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGI 348 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGT 348 (795)
++++..|++.|++++........++ ++.+.+. ..|+|++.|||=.
T Consensus 3 ~~~~~~f~~~g~~v~~l~~~~~~~~-~~~~~i~---~ad~I~~~GG~~~ 47 (154)
T PF03575_consen 3 EKFRKAFRKLGFEVDQLDLSDRNDA-DILEAIR---EADAIFLGGGDTF 47 (154)
T ss_dssp HHHHHHHHHCT-EEEECCCTSCGHH-HHHHHHH---HSSEEEE--S-HH
T ss_pred HHHHHHHHHCCCEEEEEeccCCChH-HHHHHHH---hCCEEEECCCCHH
Confidence 5677899999999777666655444 5556554 2699999999953
No 111
>PF10254 Pacs-1: PACS-1 cytosolic sorting protein; InterPro: IPR019381 PACS-1 is a cytosolic sorting protein that directs the localisation of membrane proteins in the trans-Golgi network (TGN)/endosomal system. PACS-1 connects the clathrin adaptor AP-1 to acidic cluster sorting motifs contained in the cytoplasmic domain of cargo proteins such as furin, the cation-independent mannose-6-phosphate receptor and in viral proteins such as human immunodeficiency virus type 1 Nef [].
Probab=56.95 E-value=38 Score=39.19 Aligned_cols=96 Identities=21% Similarity=0.314 Sum_probs=62.0
Q ss_pred eEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhh----h-----cC--CCCCeEEEcCchH
Q 003790 280 KMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVD----I-----SS--CPDGIICVGGDGI 348 (795)
Q Consensus 280 rllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~----~-----~~--~~D~IVvvGGDGT 348 (795)
.-.+|+|..--.|+ .+..+|...... ++.|....+.+.+...+. . .. .+-.|+++|||--
T Consensus 17 e~i~Lvn~sd~qgq-------~l~~~l~~~~~p--vv~t~s~advqa~fs~iv~rIQk~Cn~ns~~p~~vKV~v~G~~~y 87 (414)
T PF10254_consen 17 ENIILVNTSDWQGQ-------FLSDLLQEHMLP--VVCTCSTADVQAAFSAIVSRIQKFCNCNSSPPPPVKVAVAGGQSY 87 (414)
T ss_pred ceEEEEecCccchh-------HHHHHHhhcCCC--eEecCCHHHHHHHHHHHHHHHHHhccCCCCCCCceEEEEEccHHH
Confidence 46788897654443 245567766544 455666666655443331 1 01 1235899999999
Q ss_pred HHHHHHHHHc-----CCCcccCCCccEEEeecCCcchhhhhhcCC
Q 003790 349 INEVLNGLLS-----RGNQKEGISIPIGIIPAGSDNSLVWTVLGV 388 (795)
Q Consensus 349 lnEVvNGL~~-----r~d~~~a~~iPLGIIP~GTGNdfArsllGi 388 (795)
++.|+....+ .++|.. -+.+-|||+|+ |.+|+. +|.
T Consensus 88 ~~~VLr~yVE~Ls~K~~dWl~--~~rFlvIPlGs-~~vary-Lgs 128 (414)
T PF10254_consen 88 LSAVLRAYVEQLSHKPPDWLN--YLRFLVIPLGS-HPVARY-LGS 128 (414)
T ss_pred HHHHHHHHHHHhccCCccccc--ceeEEEecCCC-CHHHHH-Hhc
Confidence 9999987654 245532 36689999999 999996 554
No 112
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=55.93 E-value=40 Score=38.42 Aligned_cols=93 Identities=22% Similarity=0.291 Sum_probs=63.8
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc--chHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~--ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL 356 (795)
++.+||.-+.. .+++.+.+...|...|+.+........ ++...+++.+.. ..+|.||.+|| |.+..++..+
T Consensus 31 ~~~lvv~g~~~-----~~~~~~~~~~~l~~~g~~~~~~~~~~a~~~ev~~~~~~~~~-~~~d~vIGVGG-Gk~iD~aK~~ 103 (360)
T COG0371 31 SRALVVTGENT-----YAIAGEKVEKSLKDEGLVVHVVFVGEASEEEVERLAAEAGE-DGADVVIGVGG-GKTIDTAKAA 103 (360)
T ss_pred CceEEEEChhH-----HHHHHHHHHHHhcccCcceeeeecCccCHHHHHHHHHHhcc-cCCCEEEEecC-cHHHHHHHHH
Confidence 67888875543 356667889999999985555444333 334445554432 24689999988 8888888888
Q ss_pred HcCCCcccCCCccEEEeecCCcchhhhh
Q 003790 357 LSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (795)
Q Consensus 357 ~~r~d~~~a~~iPLGIIP~GTGNdfArs 384 (795)
..+ .++|+-++|.=-.+|=..+
T Consensus 104 A~~------~~~pfIsvPT~AS~Da~~S 125 (360)
T COG0371 104 AYR------LGLPFISVPTIASTDAITS 125 (360)
T ss_pred HHH------cCCCEEEecCccccccccC
Confidence 765 3689999998666665544
No 113
>PRK13055 putative lipid kinase; Reviewed
Probab=55.75 E-value=7.3 Score=43.32 Aligned_cols=32 Identities=6% Similarity=-0.208 Sum_probs=26.1
Q ss_pred eeeeeec-cCCCCCCcccCCCCCcCCCCCCCCCCCCCCCcccC
Q 003790 494 LYTDIMR-KSKNEGMPRASSLSSIDSIMTPSRMSGGDPDTTCS 535 (795)
Q Consensus 494 ~~v~V~N-r~~GgG~~iaP~A~~~d~~~t~~~~~DG~Ldvv~~ 535 (795)
.++.++| +++|||+.++|+|++ +||.||+++.
T Consensus 195 ~~~~v~n~~~~Gg~~~~~p~a~~----------~DG~ldv~i~ 227 (334)
T PRK13055 195 SMFFLALTNSVGGFEQIVPDAKL----------DDGKFTLIIV 227 (334)
T ss_pred EEEEEEcCcccCCccccCCCCcC----------CCceEEEEEE
Confidence 3566788 999999999999984 6899997763
No 114
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=54.58 E-value=77 Score=36.31 Aligned_cols=100 Identities=13% Similarity=0.212 Sum_probs=54.8
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE--eCCc--chHHHHHHHhhhcCCCCCeEEEcCchHHHHH--
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK--TTSA--GHAKNLASTVDISSCPDGIICVGGDGIINEV-- 352 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~--T~~~--ghA~ela~~l~~~~~~D~IVvvGGDGTlnEV-- 352 (795)
++++|+.-+.-- ....+ +.+...|+++|+++.++. +..+ ....+.++.+.. ..+|.||.+||=-.+--.
T Consensus 50 ~~~lvv~~~~~~---~~g~~-~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~-~~~D~IiavGGGS~iD~AKa 124 (395)
T PRK15454 50 KHLFVMADSFLH---QAGMT-AGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRE-SGCDGVIAFGGGSVLDAAKA 124 (395)
T ss_pred CEEEEEcCcchh---hCccH-HHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHh-cCcCEEEEeCChHHHHHHHH
Confidence 567766543321 11234 468889999999887662 2122 223344443332 347999999995554432
Q ss_pred HHHHHcCCC--c-------ccCCCccEEEeec--CCcchhhh
Q 003790 353 LNGLLSRGN--Q-------KEGISIPIGIIPA--GSDNSLVW 383 (795)
Q Consensus 353 vNGL~~r~d--~-------~~a~~iPLGIIP~--GTGNdfAr 383 (795)
+..++..++ + .....+|+..||. |||--..+
T Consensus 125 ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTtaGTGSE~t~ 166 (395)
T PRK15454 125 VALLVTNPDSTLAEMSETSVLQPRLPLIAIPTTAGTGSETTN 166 (395)
T ss_pred HHHHHhCCCccHHHHhcccccCCCCCEEEECCCCcchhhhCC
Confidence 222222211 0 0112479999997 66655543
No 115
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=54.17 E-value=76 Score=32.73 Aligned_cols=66 Identities=15% Similarity=0.129 Sum_probs=41.7
Q ss_pred HhHHHHHHHcCCeEEEEEeCCcch-HHHHHHHhhhcCCCCCeEEEcCch-HHHHHHHHHHcCCCcccCCCccEEEe
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSAGH-AKNLASTVDISSCPDGIICVGGDG-IINEVLNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~gh-A~ela~~l~~~~~~D~IVvvGGDG-TlnEVvNGL~~r~d~~~a~~iPLGII 373 (795)
+.++..+++.|+.+.++.+....+ ..+..+.+.. ..+|+||++.+|. +..+++..+... ++|+-.+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~vdgii~~~~~~~~~~~~i~~~~~~-------~ipvV~~ 86 (273)
T cd06305 19 AGTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIA-QKVDAIIIQHGRAEVLKPWVKRALDA-------GIPVVAF 86 (273)
T ss_pred HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH-cCCCEEEEecCChhhhHHHHHHHHHc-------CCCEEEe
Confidence 467788999999887766543222 2234444433 3589999998875 456777776544 4665444
No 116
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=53.83 E-value=27 Score=32.91 Aligned_cols=71 Identities=25% Similarity=0.390 Sum_probs=48.9
Q ss_pred ccceeeeeecceeeeccc--------ccCCcceEEEE----ecCCcceEEEEEeecCCCCCccccccCCeeeEeEEEEec
Q 003790 157 QDAVNAKLTSKALVWGSH--------VLPLDDIVSVS----YNNGLRHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLA 224 (795)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~--------~l~l~d~~~~~----~~~~~~~~~i~~y~~~k~~~g~~~~~~~~r~~~~~~f~~ 224 (795)
+...=--||+..|.|.+. +|+|+++--=. +.++-..|.+| +|-.++- =+-.+++...|
T Consensus 19 sK~~WFVLt~~~L~wykd~eeKE~kyilpLdnLk~Rdve~gf~sk~~~FeLf-npd~rnv---------ykd~k~lel~~ 88 (110)
T cd01256 19 SKDYWFVLTSESLSWYKDDEEKEKKYMLPLDGLKLRDIEGGFMSRNHKFALF-YPDGRNV---------YKDYKQLELGC 88 (110)
T ss_pred CcceEEEEecceeeeecccccccccceeeccccEEEeecccccCCCcEEEEE-cCccccc---------ccchheeeecC
Confidence 445556799999999954 89998884322 23344446666 4544431 12356788899
Q ss_pred CCHHHHHHHHHhh
Q 003790 225 STTEEAIQWVGGF 237 (795)
Q Consensus 225 ~~~~~a~~W~~~~ 237 (795)
+++++..-|...|
T Consensus 89 ~~~e~vdswkasf 101 (110)
T cd01256 89 ETLEEVDSWKASF 101 (110)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999987
No 117
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=53.67 E-value=71 Score=33.01 Aligned_cols=84 Identities=19% Similarity=0.156 Sum_probs=48.1
Q ss_pred eEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC---CcchHHHHHHHhhhcCCCCCeEEEcCchH-HHHHHHH
Q 003790 280 KMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT---SAGHAKNLASTVDISSCPDGIICVGGDGI-INEVLNG 355 (795)
Q Consensus 280 rllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~---~~ghA~ela~~l~~~~~~D~IVvvGGDGT-lnEVvNG 355 (795)
|+.||+ |.....--..++ ..++..+++.|+.+.+..+. ......++.+.+.. ..+|+||+++.|-. +.+++..
T Consensus 1 ~Igvi~-~~~~~~~~~~~~-~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgvii~~~~~~~~~~~l~~ 77 (273)
T cd06310 1 KIALVP-KGTTSDFWQAVK-AGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIA-RGPDAILLAPTDAKALVPPLKE 77 (273)
T ss_pred CeEEEe-cCCCcHHHHHHH-HHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHH-hCCCEEEEcCCChhhhHHHHHH
Confidence 355666 332221122333 46777888899888777543 22333445555533 34799999987754 2456666
Q ss_pred HHcCCCcccCCCccEEEe
Q 003790 356 LLSRGNQKEGISIPIGII 373 (795)
Q Consensus 356 L~~r~d~~~a~~iPLGII 373 (795)
+... .+|+-++
T Consensus 78 ~~~~-------~ipvV~~ 88 (273)
T cd06310 78 AKDA-------GIPVVLI 88 (273)
T ss_pred HHHC-------CCCEEEe
Confidence 6543 4666665
No 118
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=53.46 E-value=90 Score=30.90 Aligned_cols=58 Identities=16% Similarity=0.055 Sum_probs=38.2
Q ss_pred HhHHHHHHH--cCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHc
Q 003790 300 DIVEPIFKL--AGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLS 358 (795)
Q Consensus 300 ~~I~plL~~--aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~ 358 (795)
+.++..+++ .++++.++.+.... ...++++++... .+|+||..+.+.+...++..+..
T Consensus 20 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~ii~~~~~~~~~~~~~~~~~ 80 (269)
T cd01391 20 AGIELAAEEIGRGLEVILADSQSDPERALEALRDLIQQ-GVDGIIGPPSSSSALAVVELAAA 80 (269)
T ss_pred HHHHHHHHHhCCceEEEEecCCCCHHHHHHHHHHHHHc-CCCEEEecCCCHHHHHHHHHHHH
Confidence 456677778 67777666665543 455566666543 47999999988877665555543
No 119
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=52.71 E-value=87 Score=33.62 Aligned_cols=99 Identities=11% Similarity=0.202 Sum_probs=64.6
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhc-CCCCCeEEEcCchHHHHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDIS-SCPDGIICVGGDGIINEVLNGLL 357 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~-~~~D~IVvvGGDGTlnEVvNGL~ 357 (795)
|++..++|+++|.||..... .+...|.++|-.+.++.++...+..+..+..... .+.+.+.|.++| .+.- +.-.+
T Consensus 1 M~vItf~s~KGGaGKTT~~~--~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~-e~~~-l~~~~ 76 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAM--ALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEAD-ELTI-LEDAY 76 (231)
T ss_pred CCeEEEecCCCCCcHHHHHH--HHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEecc-chhh-HHHHH
Confidence 46889999999999986543 5778888999999999999998888886655322 233455555544 2222 22222
Q ss_pred cCCCcccCCCccEEEeec-CCcchhhhh
Q 003790 358 SRGNQKEGISIPIGIIPA-GSDNSLVWT 384 (795)
Q Consensus 358 ~r~d~~~a~~iPLGIIP~-GTGNdfArs 384 (795)
+..+ .....+.+|=. |++|.++..
T Consensus 77 e~a~---~~~~d~VlvDleG~as~~~~~ 101 (231)
T PF07015_consen 77 EAAE---ASGFDFVLVDLEGGASELNDY 101 (231)
T ss_pred HHHH---hcCCCEEEEeCCCCCchhHHH
Confidence 2110 01245677776 888887754
No 120
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=52.62 E-value=83 Score=32.68 Aligned_cols=66 Identities=18% Similarity=0.208 Sum_probs=43.3
Q ss_pred HhHHHHHHHcCCeEEEEEeCC--cchHHHHHHHhhhcCCCCCeEEEcCchH-HHHHHHHHHcCCCcccCCCccEEEe
Q 003790 300 DIVEPIFKLAGFKLEVVKTTS--AGHAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~--~ghA~ela~~l~~~~~~D~IVvvGGDGT-lnEVvNGL~~r~d~~~a~~iPLGII 373 (795)
+.++..+++.|+.+.++.+.. .....++.+.+... ..|+||+++.+.+ +.+.+..+... ++|+-.+
T Consensus 20 ~g~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~-~vdgiii~~~~~~~~~~~l~~~~~~-------~ipvV~~ 88 (271)
T cd06312 20 NGAEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAA-KPDGIVVTIPDPDALDPAIKRAVAA-------GIPVISF 88 (271)
T ss_pred HHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHh-CCCEEEEeCCChHHhHHHHHHHHHC-------CCeEEEe
Confidence 567778888999988887765 22334455555433 5899999998864 45566666443 4666555
No 121
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=51.91 E-value=45 Score=39.76 Aligned_cols=89 Identities=16% Similarity=0.129 Sum_probs=54.4
Q ss_pred eccEEEEEEecccccccC-------CCCccCcCCCCCCCeEEEEEEcCcChHHHHHHHHHhccCCCCCCCceEEEEEEEE
Q 003790 678 KGQYLGIMICNHACRTVQ-------SAQVVAPRAEYDDNTMDMLLVHGSGRLRLARFFLLLQMGRHLSLPYVEYVKVKSV 750 (795)
Q Consensus 678 eG~Fv~v~v~N~~~~~~~-------~d~~lAP~A~l~DG~LDLvlV~~~sR~~Ll~~l~~~~~G~hl~~P~V~~ikvka~ 750 (795)
|-.|-.|...|++.||-| .|-.=+--.+.+||+++||=.. ... |-+++-|.|=+. ...+++|
T Consensus 591 eLK~qCivFlNIprYcaGTmPWG~pgdhhDfePqrhdDGyvEViGFT---mas----LAALQvGGhGER----l~QCreV 659 (1004)
T KOG0782|consen 591 ELKLQCIVFLNIPRYCAGTMPWGEPGDHHDFEPQRHDDGYVEVIGFT---MAS----LAALQVGGHGER----LAQCREV 659 (1004)
T ss_pred hcccceEEEecchhhhcCccCCCCCCccccCCccccCCceEEEEeee---HHH----HHHHhhcCcchh----hhhceeE
Confidence 335667777898888765 1112222346799999988543 222 334455555442 3347788
Q ss_pred EEEecCCCCCceeecCceeec-CeeEEEee
Q 003790 751 KIKAGKHTHNSCGIDGELFPL-NGQVISSL 779 (795)
Q Consensus 751 rIep~~~~~~~i~VDGE~ip~-~~~V~~~v 779 (795)
++... ..-+|.||||...+ .+-|.+.+
T Consensus 660 ~l~T~--KaIPmQVDGEPC~LAps~Iri~l 687 (1004)
T KOG0782|consen 660 RLITN--KAIPMQVDGEPCLLAPSIIRIGL 687 (1004)
T ss_pred EEEec--cccceeecCcchhcchhheEEee
Confidence 88774 45679999999854 33445444
No 122
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=51.27 E-value=37 Score=31.76 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=19.2
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003790 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
++|.|.++|.++++.|.++|.
T Consensus 78 rt~~l~A~se~e~e~WI~~i~ 98 (101)
T cd01264 78 KTYILKAKDEKNAEEWLQCLN 98 (101)
T ss_pred ceEEEEeCCHHHHHHHHHHHH
Confidence 679999999999999999983
No 123
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=51.14 E-value=72 Score=36.57 Aligned_cols=91 Identities=16% Similarity=0.324 Sum_probs=52.6
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE----------eCCc-chHHHHHHHhhhcC--CCCCeEEEc
Q 003790 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK----------TTSA-GHAKNLASTVDISS--CPDGIICVG 344 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~----------T~~~-ghA~ela~~l~~~~--~~D~IVvvG 344 (795)
.+|++||..+.--+-. ..+. +.+...|+.+++++.++. .+.. ....++.+.+...+ ..|.||++|
T Consensus 42 ~~r~liVtD~~v~~~~-~~l~-~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiG 119 (389)
T PRK06203 42 PKKVLVVIDSGVLRAH-PDLL-EQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIG 119 (389)
T ss_pred CCeEEEEECchHHHhh-hhHH-HHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeC
Confidence 4789999987654311 1223 578888988887654321 1221 22444444443221 135899988
Q ss_pred CchHHHHHHHHHHcCCCcccCCCccEEEeec
Q 003790 345 GDGIINEVLNGLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 345 GDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~ 375 (795)
| |++-.++-.+..... ..+|+-.||.
T Consensus 120 G-Gsv~D~ak~iA~~~~----rgip~I~IPT 145 (389)
T PRK06203 120 G-GAVLDMVGYAAATAH----RGVRLIRIPT 145 (389)
T ss_pred C-cHHHHHHHHHHHHhc----CCCCEEEEcC
Confidence 7 777777665542211 2579999996
No 124
>PRK15138 aldehyde reductase; Provisional
Probab=50.78 E-value=75 Score=36.25 Aligned_cols=98 Identities=15% Similarity=0.166 Sum_probs=50.2
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE--eCCc--chHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK--TTSA--GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~--T~~~--ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
+|++||.-+.+=.. ...+ +.+...|+ ++++.++. ..++ ....+.++.+.. ...|.||.+|| |.+-.+..
T Consensus 30 ~~~livt~~~~~~~--~g~~-~~v~~~L~--~~~~~~f~~v~~~p~~~~v~~~~~~~~~-~~~D~IIaiGG-GS~iD~AK 102 (387)
T PRK15138 30 ARVLITYGGGSVKK--TGVL-DQVLDALK--GMDVLEFGGIEPNPTYETLMKAVKLVRE-EKITFLLAVGG-GSVLDGTK 102 (387)
T ss_pred CeEEEECCCchHHh--cCcH-HHHHHHhc--CCeEEEECCccCCCCHHHHHHHHHHHHH-cCCCEEEEeCC-hHHHHHHH
Confidence 67888865443211 1223 35666774 66665552 1112 133344433332 34799999999 34333333
Q ss_pred HH---HcCCC------------cccCCCccEEEeec--CCcchhhh
Q 003790 355 GL---LSRGN------------QKEGISIPIGIIPA--GSDNSLVW 383 (795)
Q Consensus 355 GL---~~r~d------------~~~a~~iPLGIIP~--GTGNdfAr 383 (795)
.+ +..+. ......+|+..||. |||--...
T Consensus 103 ~ia~~~~~~~~~~~~~~~~~~~~~~~~~~P~iaVPTTaGTGSE~t~ 148 (387)
T PRK15138 103 FIAAAANYPENIDPWHILETGGKEIKSAIPMGSVLTLPATGSESNA 148 (387)
T ss_pred HHHHHHhCCCCCCHHHHHhccCCCcCCCCCEEEEecCCccccccCC
Confidence 32 11110 01112479999997 77765543
No 125
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=49.76 E-value=37 Score=37.74 Aligned_cols=87 Identities=20% Similarity=0.307 Sum_probs=50.3
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE---eCCc-chHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK---TTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~---T~~~-ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
+|++||..+.. ... +.+.+...|+..++ .++. .... ....++++.+.. ...|.||.+|| |++..++-
T Consensus 24 ~~~livt~~~~----~~~-~~~~v~~~l~~~~~--~~~~~~~~~p~~~~v~~~~~~~~~-~~~d~IIaiGG-Gs~iD~aK 94 (337)
T cd08177 24 SRALVLTTPSL----ATK-LAERVASALGDRVA--GTFDGAVMHTPVEVTEAAVAAARE-AGADGIVAIGG-GSTIDLAK 94 (337)
T ss_pred CeEEEEcChHH----HHH-HHHHHHHHhccCCc--EEeCCCCCCCCHHHHHHHHHHHHh-cCCCEEEEeCC-cHHHHHHH
Confidence 67888865432 222 33577788877643 2221 1111 122333333322 34799999998 88888887
Q ss_pred HHHcCCCcccCCCccEEEeec-CCcch
Q 003790 355 GLLSRGNQKEGISIPIGIIPA-GSDNS 380 (795)
Q Consensus 355 GL~~r~d~~~a~~iPLGIIP~-GTGNd 380 (795)
.+.... .+|+..||. -||..
T Consensus 95 ~ia~~~------~~p~i~IPTtatgse 115 (337)
T cd08177 95 AIALRT------GLPIIAIPTTLSGSE 115 (337)
T ss_pred HHHHHh------cCCEEEEcCCchhhh
Confidence 765431 589999994 24443
No 126
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=49.70 E-value=41 Score=37.99 Aligned_cols=95 Identities=17% Similarity=0.280 Sum_probs=56.2
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC-c--chHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS-A--GHAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~-~--ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNG 355 (795)
+|++||..+... .+ +.+...|+.+|+++.++.... + ....+.++.+.. ..+|.||.+|| |++..+.-.
T Consensus 23 ~r~livtd~~~~------~~-~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIaiGG-GS~~D~aK~ 93 (374)
T cd08183 23 RRVLLVTGASSL------RA-AWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARN-AGCDVVIAIGG-GSVIDAGKA 93 (374)
T ss_pred CcEEEEECCchH------HH-HHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHh-cCCCEEEEecC-chHHHHHHH
Confidence 789999877653 33 567889999999887764222 1 122333333322 34799999999 555555544
Q ss_pred H---HcCCC-------------cccCCCccEEEeec--CCcchhh
Q 003790 356 L---LSRGN-------------QKEGISIPIGIIPA--GSDNSLV 382 (795)
Q Consensus 356 L---~~r~d-------------~~~a~~iPLGIIP~--GTGNdfA 382 (795)
+ +..+. ......+|+..||. |||--..
T Consensus 94 ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGSE~t 138 (374)
T cd08183 94 IAALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTTAGTGSEVT 138 (374)
T ss_pred HHHHHcCCCCHHHHHhccCccccCCCCCCCEEEecCCCchhHHhC
Confidence 3 21110 00113579999996 6665444
No 127
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=49.59 E-value=83 Score=35.94 Aligned_cols=92 Identities=14% Similarity=0.264 Sum_probs=53.9
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEE----E------eCCc-chHHHHHHHhhhcC--CCCCeEEE
Q 003790 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVV----K------TTSA-GHAKNLASTVDISS--CPDGIICV 343 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~----~------T~~~-ghA~ela~~l~~~~--~~D~IVvv 343 (795)
..+|++||.++.-.+- ... +.+.+...|+.+|++++++ . ++.. ....++.+.+...+ ..|.||++
T Consensus 29 ~~~r~lvVtD~~v~~~-~~~-~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIal 106 (369)
T cd08198 29 ARPKVLVVIDSGVAQA-NPQ-LASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAI 106 (369)
T ss_pred CCCeEEEEECcchHHh-hhh-HHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEE
Confidence 3478999999776541 112 2257788898888655422 1 1111 12233444433221 12588988
Q ss_pred cCchHHHHHHHHHHcCCCcccCCCccEEEeec
Q 003790 344 GGDGIINEVLNGLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 344 GGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~ 375 (795)
|| |.+..++-.+..... ..+|+-.||.
T Consensus 107 GG-G~v~D~ag~vA~~~~----rGip~I~IPT 133 (369)
T cd08198 107 GG-GAVLDAVGYAAATAH----RGVRLIRIPT 133 (369)
T ss_pred CC-hHHHHHHHHHHHHhc----CCCCEEEECC
Confidence 88 888888877653211 1589999995
No 128
>PRK09271 flavodoxin; Provisional
Probab=48.48 E-value=29 Score=34.40 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=49.0
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEc---CchHHHH----
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVG---GDGIINE---- 351 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvG---GDGTlnE---- 351 (795)
++++||+=...| ...++. +.|...|+..|+++++....... ..++..++ . .+|.||++. |+|.+.+
T Consensus 1 mkv~IvY~S~tG--nTe~~A-~~ia~~l~~~g~~v~~~~~~~~~-~~~~~~~~--~-~~d~vilgt~T~~~G~~p~~~~~ 73 (160)
T PRK09271 1 MRILLAYASLSG--NTREVA-REIEERCEEAGHEVDWVETDVQT-LAEYPLDP--E-DYDLYLLGTWTDNAGRTPPEMKR 73 (160)
T ss_pred CeEEEEEEcCCc--hHHHHH-HHHHHHHHhCCCeeEEEeccccc-ccccccCc--c-cCCEEEEECcccCCCcCCHHHHH
Confidence 478899966665 444555 57888899999888766543321 11111122 1 368887777 6787554
Q ss_pred HHHHHHcCCCcccCCCccEEEeecC
Q 003790 352 VLNGLLSRGNQKEGISIPIGIIPAG 376 (795)
Q Consensus 352 VvNGL~~r~d~~~a~~iPLGIIP~G 376 (795)
+++.|.... .....++++-.|
T Consensus 74 f~~~l~~~~----~~~k~~avfgsg 94 (160)
T PRK09271 74 FIAELAETI----GKPPNVAVFGTG 94 (160)
T ss_pred HHHHHHHHh----ccCCeEEEEecC
Confidence 444443311 012457777444
No 129
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=47.42 E-value=1.3e+02 Score=30.75 Aligned_cols=66 Identities=18% Similarity=0.208 Sum_probs=41.3
Q ss_pred HhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEe
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGII 373 (795)
+.++..++..|+.+.+..+.+.. ...++.+.+.. ..+|+||+..++....+++.-+... ++|+-++
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiii~~~~~~~~~~~~~~~~~-------~ipvV~~ 85 (266)
T cd06282 19 QGIQEEARAAGYSLLLATTDYDAEREADAVETLLR-QRVDGLILTVADAATSPALDLLDAE-------RVPYVLA 85 (266)
T ss_pred HHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHh-cCCCEEEEecCCCCchHHHHHHhhC-------CCCEEEE
Confidence 46777888889988887765422 22344555433 3589999988876434556655443 4665444
No 130
>PRK04155 chaperone protein HchA; Provisional
Probab=46.25 E-value=1.3e+02 Score=33.26 Aligned_cols=41 Identities=20% Similarity=0.349 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCC------CC--CCchhhHHHhHH--HHHHHcCCeEEEEEeC
Q 003790 278 PPKMLVILNPRS------GR--GRSSKVFHDIVE--PIFKLAGFKLEVVKTT 319 (795)
Q Consensus 278 ~krllVIvNP~S------G~--Gka~ki~~~~I~--plL~~aGi~~~v~~T~ 319 (795)
.||+|||+.-.. |+ ..+.... +.+. .+|+++|+++++...+
T Consensus 49 ~kkiL~v~t~~~~~~~~~g~~~~tG~~~~-E~~~P~~~L~~AG~eVdiAS~~ 99 (287)
T PRK04155 49 GKKILMIAADERYLPMDNGKLFSTGNHPV-ETLLPMYHLHKAGFEFDVATLS 99 (287)
T ss_pred CCeEEEEEcCcccccCCCCCcCCCCccHH-HHHHHHHHHHHCCCEEEEEecC
Confidence 358888886332 32 1222111 2332 4688999999988654
No 131
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=45.68 E-value=1.3e+02 Score=30.80 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=40.3
Q ss_pred HhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEe
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGII 373 (795)
+.++..+++.|+.+.+..+.......+.+.++.....+|+||+.+.+... ..+..+... ++|+-.+
T Consensus 23 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~-~~~~~~~~~-------~ipvV~~ 88 (268)
T cd06271 23 SGLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVESGLVDGVIISRTRPDD-PRVALLLER-------GFPFVTH 88 (268)
T ss_pred HHHHHHHHHCCceEEEecCCCcHHHHHHHHHHHHcCCCCEEEEecCCCCC-hHHHHHHhc-------CCCEEEE
Confidence 56778889999988877766543333444444223347999998876432 334444332 4676665
No 132
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=45.62 E-value=61 Score=34.69 Aligned_cols=62 Identities=16% Similarity=0.299 Sum_probs=38.1
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchH
Q 003790 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGI 348 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGT 348 (795)
+.+|+++| |.|+.......|-+..+..|+..|+++..+.+. + +..+.+. ..|+|++.||+=+
T Consensus 30 ~~~~v~fI--PtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~--~---d~~~~l~---~ad~I~v~GGnt~ 91 (233)
T PRK05282 30 GRRKAVFI--PYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRV--A---DPVAAIE---NAEAIFVGGGNTF 91 (233)
T ss_pred CCCeEEEE--CCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccc--h---hhHHHHh---cCCEEEECCccHH
Confidence 34555555 666644333445467888999999886655432 2 2333332 3599999999853
No 133
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=45.36 E-value=89 Score=29.59 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.7
Q ss_pred EeEEEEecCCHHHHHHHHHhhh
Q 003790 217 RKDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 217 ~~~~~f~~~~~~~a~~W~~~~~ 238 (795)
.+.|.|.+++.+++++|+++|.
T Consensus 89 ~~~~~~~A~s~~e~~~Wi~al~ 110 (125)
T cd01252 89 HSVYRISAANDEEMDEWIKSIK 110 (125)
T ss_pred ceEEEEECCCHHHHHHHHHHHH
Confidence 4688899999999999999994
No 134
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=45.26 E-value=1.1e+02 Score=34.31 Aligned_cols=93 Identities=12% Similarity=0.122 Sum_probs=55.3
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHH-cCCeEEEEEe----CCcchHHHHHHHhhhc--CCCCCeEEEcCchHHH
Q 003790 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKL-AGFKLEVVKT----TSAGHAKNLASTVDIS--SCPDGIICVGGDGIIN 350 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~-aGi~~~v~~T----~~~ghA~ela~~l~~~--~~~D~IVvvGGDGTln 350 (795)
.++++||..+.--+ .+.+.+...|+. .++++.++.. .......++++.+... ...|.||++|| |++.
T Consensus 23 ~~k~livtd~~v~~-----~~~~~v~~~L~~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gsv~ 96 (344)
T cd08169 23 FDQYFFISDSGVAD-----LIAHYIAEYLSKILPVHILVIEGGEEYKTFETVTRILERAIALGANRRTAIVAVGG-GATG 96 (344)
T ss_pred CCeEEEEECccHHH-----HHHHHHHHHHHhhcCceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-cHHH
Confidence 36889998765532 344678888877 6766655431 1222344444444321 12588998887 7777
Q ss_pred HHHHHHHcCCCcccCCCccEEEeec--CCcch
Q 003790 351 EVLNGLLSRGNQKEGISIPIGIIPA--GSDNS 380 (795)
Q Consensus 351 EVvNGL~~r~d~~~a~~iPLGIIP~--GTGNd 380 (795)
.++-.+...-. ..+|+-.||. ++++|
T Consensus 97 D~ak~vA~~~~----rgip~i~VPTTlla~~d 124 (344)
T cd08169 97 DVAGFVASTLF----RGIAFIRVPTTLLAQSD 124 (344)
T ss_pred HHHHHHHHHhc----cCCcEEEecCCcccccc
Confidence 77665543110 1589999997 55555
No 135
>PRK06490 glutamine amidotransferase; Provisional
Probab=44.33 E-value=26 Score=37.29 Aligned_cols=64 Identities=17% Similarity=0.339 Sum_probs=42.7
Q ss_pred cCCCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHH
Q 003790 274 RCKSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIIN 350 (795)
Q Consensus 274 ~~~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTln 350 (795)
.|...+|++||.|-.++.-. .+...|++.|.+++++.....+. +...++ .+|+||+.||=++++
T Consensus 3 ~~~~~~~vlvi~h~~~~~~g-------~l~~~l~~~g~~~~v~~~~~~~~---~p~~l~---~~dgvii~Ggp~~~~ 66 (239)
T PRK06490 3 QARDKRPVLIVLHQERSTPG-------RVGQLLQERGYPLDIRRPRLGDP---LPDTLE---DHAGAVIFGGPMSAN 66 (239)
T ss_pred ccCCCceEEEEecCCCCCCh-------HHHHHHHHCCCceEEEeccCCCC---CCCccc---ccCEEEEECCCCCCC
Confidence 35678999999887765322 35667888999988876542221 111222 379999999988764
No 136
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=44.28 E-value=1.3e+02 Score=31.35 Aligned_cols=66 Identities=9% Similarity=0.052 Sum_probs=39.9
Q ss_pred HhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCch-HHHHHHHHHHcCCCcccCCCccEEEe
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDG-IINEVLNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDG-TlnEVvNGL~~r~d~~~a~~iPLGII 373 (795)
..++..+++.|+++.+..+.... ...+..+.+.. ..+|+||+.+.|- .+.+.+..+... .+|+-++
T Consensus 19 ~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~-~~~Dgiii~~~~~~~~~~~i~~~~~~-------~iPvV~~ 86 (282)
T cd06318 19 EAAKAHAKALGYELISTDAQGDLTKQIADVEDLLT-RGVNVLIINPVDPEGLVPAVAAAKAA-------GVPVVVV 86 (282)
T ss_pred HHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHH-cCCCEEEEecCCccchHHHHHHHHHC-------CCCEEEe
Confidence 56778888899887665553221 12234444433 3579999988763 334556666543 4677665
No 137
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=43.78 E-value=1.6e+02 Score=31.60 Aligned_cols=87 Identities=11% Similarity=0.106 Sum_probs=49.1
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHH
Q 003790 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNG 355 (795)
+.+.+.||+.-... .--..++ ..++..+++.|+.+.+..+.... ...++.+.+.. ..+|+||+++.+-...+.+..
T Consensus 60 ~~~~Igvv~~~~~~-~~~~~l~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~~~~~~~~ 136 (328)
T PRK11303 60 RTRSIGLIIPDLEN-TSYARIA-KYLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQ-RQVDALIVSTSLPPEHPFYQR 136 (328)
T ss_pred CCceEEEEeCCCCC-chHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHH-cCCCEEEEcCCCCCChHHHHH
Confidence 44567777632222 1122333 46777788899988777654322 22344444433 358999998875433455555
Q ss_pred HHcCCCcccCCCccEEEe
Q 003790 356 LLSRGNQKEGISIPIGII 373 (795)
Q Consensus 356 L~~r~d~~~a~~iPLGII 373 (795)
|... ++|+-+|
T Consensus 137 l~~~-------~iPvV~v 147 (328)
T PRK11303 137 LQND-------GLPIIAL 147 (328)
T ss_pred HHhc-------CCCEEEE
Confidence 5432 4677665
No 138
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=43.35 E-value=1.8e+02 Score=31.32 Aligned_cols=88 Identities=13% Similarity=0.102 Sum_probs=50.3
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-chHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003790 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 276 ~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~-ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
++.+.+.||+...+ ..--..++ +.++..+++.|+.+.+..+... ....++.+.+.. ..+|+||+++.+....+.+.
T Consensus 62 ~~~~~Igvv~~~~~-~~~~~~i~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~~~~~~~ 138 (342)
T PRK10014 62 GQSGVIGLIVRDLS-APFYAELT-AGLTEALEAQGRMVFLLQGGKDGEQLAQRFSTLLN-QGVDGVVIAGAAGSSDDLRE 138 (342)
T ss_pred CCCCEEEEEeCCCc-cchHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHh-CCCCEEEEeCCCCCcHHHHH
Confidence 45567777773222 11112222 4567788888887766555432 222344445433 35899999988765455666
Q ss_pred HHHcCCCcccCCCccEEEe
Q 003790 355 GLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 355 GL~~r~d~~~a~~iPLGII 373 (795)
.|... .+|+-.+
T Consensus 139 ~l~~~-------~iPvV~~ 150 (342)
T PRK10014 139 MAEEK-------GIPVVFA 150 (342)
T ss_pred HHhhc-------CCCEEEE
Confidence 55443 4677666
No 139
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=42.87 E-value=1.8e+02 Score=31.52 Aligned_cols=77 Identities=17% Similarity=0.197 Sum_probs=47.0
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE--eCCcchHHHHHHHhhhcCCCCCeEEEcCch-HHHHHHH
Q 003790 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK--TTSAGHAKNLASTVDISSCPDGIICVGGDG-IINEVLN 354 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~--T~~~ghA~ela~~l~~~~~~D~IVvvGGDG-TlnEVvN 354 (795)
.+|+.+|+++...-++ ... +.++..+++.|+++.... .....+...+++++... .+|+|++. +|+ ....++.
T Consensus 132 ~~~~~~i~~~~~~~g~--~~~-~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~i~~~-~pdaV~~~-~~~~~a~~~~~ 206 (341)
T cd06341 132 GTRAVALVTALSAAVS--AAA-ALLARSLAAAGVSVAGIVVITATAPDPTPQAQQAAAA-GADAIITV-LDAAVCASVLK 206 (341)
T ss_pred CcEEEEEEeCCcHHHH--HHH-HHHHHHHHHcCCccccccccCCCCCCHHHHHHHHHhc-CCCEEEEe-cChHHHHHHHH
Confidence 3678878766442222 222 467778899998764332 22234555666666433 47887765 566 7778888
Q ss_pred HHHcC
Q 003790 355 GLLSR 359 (795)
Q Consensus 355 GL~~r 359 (795)
.+.+.
T Consensus 207 ~~~~~ 211 (341)
T cd06341 207 AVRAA 211 (341)
T ss_pred HHHHc
Confidence 88765
No 140
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=42.37 E-value=1.3e+02 Score=31.71 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=44.7
Q ss_pred HhHHHHHHHcCCeEEEEEeCCc-chHHHHHHHhhhcCCCCCeEEEcCchH-HHHHHHHHHcCCCcccCCCccEEEeecC
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGIIPAG 376 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~-ghA~ela~~l~~~~~~D~IVvvGGDGT-lnEVvNGL~~r~d~~~a~~iPLGIIP~G 376 (795)
..++..+++.|+.+.+..+... ....++.+.+.. ..+|+||+.+.|+. +.+++..+... .+|+-.+=..
T Consensus 19 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~-~~vdgiii~~~~~~~~~~~l~~l~~~-------~ipvV~~~~~ 89 (288)
T cd01538 19 PNFEAALKELGAEVIVQNANGDPAKQISQIENMIA-KGVDVLVIAPVDGEALASAVEKAADA-------GIPVIAYDRL 89 (288)
T ss_pred HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH-cCCCEEEEecCChhhHHHHHHHHHHC-------CCCEEEECCC
Confidence 4677788889998887776542 223345555433 35899999998875 46666665543 4676666433
No 141
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=42.35 E-value=19 Score=33.80 Aligned_cols=60 Identities=27% Similarity=0.354 Sum_probs=40.9
Q ss_pred eecceeeeccc------ccCCcceEEEEecCC-----------------cceEEEEEeecCCCCCccccccCCeeeEeEE
Q 003790 164 LTSKALVWGSH------VLPLDDIVSVSYNNG-----------------LRHFTVHSYPLKKGSYGLSCFIKPRRVRKDY 220 (795)
Q Consensus 164 ~~~~~~~~~~~------~l~l~d~~~~~~~~~-----------------~~~~~i~~y~~~k~~~g~~~~~~~~r~~~~~ 220 (795)
.....|+|... .|.|+||--++.-.. ...|||.+-+. . ..+.+
T Consensus 30 ~~~~~l~W~~~~~~~~~~l~i~~IkeIR~G~~~k~~~~~~~~~~~~~~e~~~fTIiy~~~-------------~-~~k~L 95 (115)
T cd01248 30 EKGFFLYWKDEGKKEKKVLDISSIKEIRTGKQPKDLKLRAELNQGNSLEERCFTIVYGTD-------------L-NLKSL 95 (115)
T ss_pred CCCcEEEEeCCCCccccEEEehhhhhhhCCCCCcchHHhhhhhcCCCccccEEEEEECCC-------------C-CeeEE
Confidence 35788999843 488888855543322 23455553221 1 35779
Q ss_pred EEecCCHHHHHHHHHhh
Q 003790 221 RFLASTTEEAIQWVGGF 237 (795)
Q Consensus 221 ~f~~~~~~~a~~W~~~~ 237 (795)
.|.++|.++|+.|++.|
T Consensus 96 ~lVA~s~~~a~~W~~gL 112 (115)
T cd01248 96 DLVAPSEEEAKTWVSGL 112 (115)
T ss_pred EEEECCHHHHHHHHHHH
Confidence 99999999999999987
No 142
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.65 E-value=1.8e+02 Score=29.98 Aligned_cols=70 Identities=21% Similarity=0.308 Sum_probs=43.1
Q ss_pred HhHHHHHHHcCCeEEEEEeCCcch-HHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeecCC
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSAGH-AKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGS 377 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~gh-A~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GT 377 (795)
..++..+++.|+.+.+..+....+ ..++.+.+.. ..+|+||+.+++....+++..+... ++|+-++-...
T Consensus 19 ~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgii~~~~~~~~~~~~~~~~~~-------~ipvV~i~~~~ 89 (269)
T cd06281 19 SGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQ-RRMDGIIIAPGDERDPELVDALASL-------DLPIVLLDRDM 89 (269)
T ss_pred HHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHH-cCCCEEEEecCCCCcHHHHHHHHhC-------CCCEEEEeccc
Confidence 567788999999887776654332 2344455533 3579999998764334455544433 47777764443
No 143
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=41.58 E-value=1.7e+02 Score=30.31 Aligned_cols=85 Identities=16% Similarity=0.130 Sum_probs=47.0
Q ss_pred eEEEEEcCCCCCCCchhhHHHhHHHHHHHc---CCeEEEEEeCCcch---HHHHHHHhhhcCCCCCeEEEcCch-HHHHH
Q 003790 280 KMLVILNPRSGRGRSSKVFHDIVEPIFKLA---GFKLEVVKTTSAGH---AKNLASTVDISSCPDGIICVGGDG-IINEV 352 (795)
Q Consensus 280 rllVIvNP~SG~Gka~ki~~~~I~plL~~a---Gi~~~v~~T~~~gh---A~ela~~l~~~~~~D~IVvvGGDG-TlnEV 352 (795)
|+.|+++-... .-...++ +.++..+++. |+.+++......++ ..+..+.+.. ..+|+||+++.|- .+.++
T Consensus 1 ~Ig~i~~~~~~-~~~~~~~-~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~-~~vdgiIi~~~~~~~~~~~ 77 (272)
T cd06300 1 KIGLSNSYAGN-TWRAQML-DEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIA-QGVDAIIINPASPTALNPV 77 (272)
T ss_pred CeEEeccccCC-hHHHHHH-HHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChhhhHHH
Confidence 35566643322 2222333 4666778788 87544444333322 3344455433 3589999999885 34567
Q ss_pred HHHHHcCCCcccCCCccEEEee
Q 003790 353 LNGLLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 353 vNGL~~r~d~~~a~~iPLGIIP 374 (795)
++.+... ++|+-.+-
T Consensus 78 l~~~~~~-------~iPvv~~~ 92 (272)
T cd06300 78 IEEACEA-------GIPVVSFD 92 (272)
T ss_pred HHHHHHC-------CCeEEEEe
Confidence 7766543 46766653
No 144
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.57 E-value=17 Score=39.21 Aligned_cols=51 Identities=14% Similarity=0.208 Sum_probs=38.5
Q ss_pred ccCCCCCCCceEEEEEEEEEEEecCCCCCceeecCceeecCeeEEEeeeccccccccc
Q 003790 732 QMGRHLSLPYVEYVKVKSVKIKAGKHTHNSCGIDGELFPLNGQVISSLLPEQCRLIGR 789 (795)
Q Consensus 732 ~~G~hl~~P~V~~ikvka~rIep~~~~~~~i~VDGE~ip~~~~V~~~vlP~~~rlig~ 789 (795)
..++|+..| +.+.++|+.. .+..+.+|||.+...-+|+++..|..++++--
T Consensus 186 L~~rpiVlp-----~~~~I~I~~~--~~~~l~iDGe~~~~~~~I~I~~s~~~l~li~~ 236 (256)
T PRK14075 186 LATRSIVIP-----SNEKVTVESQ--RDINLIVDGVLVGKTNRITVKKSRRYVRILRP 236 (256)
T ss_pred cCCCceEcC-----CCCEEEEEEC--CceEEEECCCCcCCCcEEEEEECCCEEEEEEc
Confidence 367888877 4667777653 34568999999864448999999999998863
No 145
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=41.10 E-value=49 Score=33.50 Aligned_cols=86 Identities=17% Similarity=0.276 Sum_probs=52.0
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcC--chHHHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGG--DGIINEVLNGL 356 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGG--DGTlnEVvNGL 356 (795)
++++|||-...|+ ..++. +.|...|.. |++++++....... .++. .||.||+.++ -|.+...+..+
T Consensus 1 MkilIvY~S~~G~--T~~iA-~~Ia~~l~~-g~~v~~~~~~~~~~-------~~l~-~yD~vIlGspi~~G~~~~~~~~f 68 (177)
T PRK11104 1 MKTLILYSSRDGQ--TRKIA-SYIASELKE-GIQCDVVNLHRIEE-------PDLS-DYDRVVIGASIRYGHFHSALYKF 68 (177)
T ss_pred CcEEEEEECCCCh--HHHHH-HHHHHHhCC-CCeEEEEEhhhcCc-------cCHH-HCCEEEEECccccCCcCHHHHHH
Confidence 4789999766664 44544 467778876 88887775443211 1122 3798887776 46666666666
Q ss_pred HcCCCcccCCCccEEEeecCC
Q 003790 357 LSRGNQKEGISIPIGIIPAGS 377 (795)
Q Consensus 357 ~~r~d~~~a~~iPLGIIP~GT 377 (795)
+.+.. ......+++++-+|-
T Consensus 69 l~~~~-~~l~~K~v~~F~v~l 88 (177)
T PRK11104 69 VKKHA-TQLNQMPSAFFSVNL 88 (177)
T ss_pred HHHHH-HHhCCCeEEEEEech
Confidence 54311 112356889988883
No 146
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.99 E-value=2e+02 Score=29.36 Aligned_cols=67 Identities=15% Similarity=0.209 Sum_probs=42.9
Q ss_pred HhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeec
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~ 375 (795)
+.++..+++.|+.+.++.+.......++.+.+.. ...|+||+.+.|-+- .++.-+... .+|+-.+-.
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~-~~vdgiii~~~~~~~-~~~~~~~~~-------~ipvV~~~~ 85 (266)
T cd06278 19 EALSRALQARGYQPLLINTDDDEDLDAALRQLLQ-YRVDGVIVTSGTLSS-ELAEECRRN-------GIPVVLINR 85 (266)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHH-cCCCEEEEecCCCCH-HHHHHHhhc-------CCCEEEECC
Confidence 4677788999998877766654344445555543 358999999887553 345555433 477766643
No 147
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=40.84 E-value=1.9e+02 Score=32.58 Aligned_cols=82 Identities=15% Similarity=0.142 Sum_probs=43.7
Q ss_pred hHHHHHHHcCCeEEEEE--eCCc--chHHHHHHHhhhc--CCCCCeEEEcCchHHHHHHHHH---HcCCC-------c--
Q 003790 301 IVEPIFKLAGFKLEVVK--TTSA--GHAKNLASTVDIS--SCPDGIICVGGDGIINEVLNGL---LSRGN-------Q-- 362 (795)
Q Consensus 301 ~I~plL~~aGi~~~v~~--T~~~--ghA~ela~~l~~~--~~~D~IVvvGGDGTlnEVvNGL---~~r~d-------~-- 362 (795)
.+...|+.+++++.++. ...+ ....+.++.+... ..+|.||.+||= .+-.+..++ +..+. +
T Consensus 40 ~v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIaiGGG-S~iD~AKaia~~~~~~~~~~~~~~~~~ 118 (347)
T cd08184 40 DLISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVGIGGG-STLDVAKAVSNMLTNPGSAEDYQGWDL 118 (347)
T ss_pred HHHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEEeCCc-HHHHHHHHHHHHHhCCCCHHHhccccc
Confidence 35556888888877662 1122 1223333333221 147999999994 444444332 22211 0
Q ss_pred ccCCCccEEEeec--CCcchhhh
Q 003790 363 KEGISIPIGIIPA--GSDNSLVW 383 (795)
Q Consensus 363 ~~a~~iPLGIIP~--GTGNdfAr 383 (795)
.....+|+..||. |||--..+
T Consensus 119 ~~~~~~PlIaVPTTaGTGSE~t~ 141 (347)
T cd08184 119 VKNPAVYKIGIPTLSGTGAEASR 141 (347)
T ss_pred ccCCCCcEEEEeCCCccccccCC
Confidence 0112468999995 77765554
No 148
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=40.80 E-value=1.2e+02 Score=32.31 Aligned_cols=58 Identities=16% Similarity=0.237 Sum_probs=35.0
Q ss_pred CCCCCeEEEEEcCCCC----CCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhh
Q 003790 275 CKSPPKMLVILNPRSG----RGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVD 332 (795)
Q Consensus 275 ~~r~krllVIvNP~SG----~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~ 332 (795)
...|+++.||||-..= ...+...=.+.++.+|+..|+++++..=-...+..+.++++.
T Consensus 4 ~~~p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~dlt~~em~~~l~~~~ 65 (241)
T smart00115 4 NSKPRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVHVKNNLTAEEMLEELKEFA 65 (241)
T ss_pred CCCCCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHH
Confidence 3567888888876531 111211112578899999999887765444445555555443
No 149
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=40.69 E-value=1.2e+02 Score=29.01 Aligned_cols=58 Identities=16% Similarity=0.048 Sum_probs=38.5
Q ss_pred hHHHHHHHcCCeEEEEEeC------Cc---chHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcC
Q 003790 301 IVEPIFKLAGFKLEVVKTT------SA---GHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSR 359 (795)
Q Consensus 301 ~I~plL~~aGi~~~v~~T~------~~---ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r 359 (795)
.....|+..|+++...... .. .-+.++.+.+... .+|.||++.|||=+-.+++.|...
T Consensus 56 ~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~-~~d~ivLvSgD~Df~~~i~~lr~~ 122 (149)
T cd06167 56 GFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKR-RIDTIVLVSGDSDFVPLVERLREL 122 (149)
T ss_pred HHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhc-CCCEEEEEECCccHHHHHHHHHHc
Confidence 3455788899887555421 11 1223333333322 479999999999999999999876
No 150
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=40.62 E-value=2.2e+02 Score=30.60 Aligned_cols=88 Identities=10% Similarity=0.117 Sum_probs=49.7
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003790 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 276 ~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
++.+.+.||+. .-...-...+. ..++..+++.|+.+.+..+.... ...++.+.+.. ...|+||+++.+....+.+.
T Consensus 58 ~~~~~Igvi~~-~~~~~~~~~~~-~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~~~~~~~ 134 (327)
T TIGR02417 58 GRSRTIGLVIP-DLENYSYARIA-KELEQQCREAGYQLLIACSDDNPDQEKVVIENLLA-RQVDALIVASCMPPEDAYYQ 134 (327)
T ss_pred CCCceEEEEeC-CCCCccHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH-cCCCEEEEeCCCCCChHHHH
Confidence 35566777773 22222222333 46777888899888776654322 22334444432 35899999887653345566
Q ss_pred HHHcCCCcccCCCccEEEe
Q 003790 355 GLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 355 GL~~r~d~~~a~~iPLGII 373 (795)
.|... .+|+-++
T Consensus 135 ~l~~~-------~iPvV~~ 146 (327)
T TIGR02417 135 KLQNE-------GLPVVAL 146 (327)
T ss_pred HHHhc-------CCCEEEE
Confidence 55433 4666655
No 151
>PRK07308 flavodoxin; Validated
Probab=40.01 E-value=1.3e+02 Score=28.93 Aligned_cols=84 Identities=19% Similarity=0.292 Sum_probs=47.9
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEc---CchHHHH----
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVG---GDGIINE---- 351 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvG---GDGTlnE---- 351 (795)
+++.|+|=-..| ...++. +.|...|...|+.+++........ .++ . .+|.||++- |+|.+..
T Consensus 2 ~~~~IvY~S~tG--nTe~iA-~~ia~~l~~~g~~~~~~~~~~~~~-----~~l--~-~~d~vi~g~~t~g~G~~p~~~~~ 70 (146)
T PRK07308 2 ALAKIVYASMTG--NTEEIA-DIVADKLRELGHDVDVDECTTVDA-----SDF--E-DADIAIVATYTYGDGELPDEIVD 70 (146)
T ss_pred ceEEEEEECCCc--hHHHHH-HHHHHHHHhCCCceEEEecccCCH-----hHh--c-cCCEEEEEeCccCCCCCCHHHHH
Confidence 368888855554 454555 567778888898887765543321 122 2 257766654 7786654
Q ss_pred HHHHHHcCCCcccCCCccEEEeecCC
Q 003790 352 VLNGLLSRGNQKEGISIPIGIIPAGS 377 (795)
Q Consensus 352 VvNGL~~r~d~~~a~~iPLGIIP~GT 377 (795)
.+..|... .....+++++-.|.
T Consensus 71 fl~~l~~~----~l~~k~~~vfG~Gd 92 (146)
T PRK07308 71 FYEDLADL----DLSGKIYGVVGSGD 92 (146)
T ss_pred HHHHHhcC----CCCCCEEEEEeeCC
Confidence 33333221 12346677776554
No 152
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=39.77 E-value=65 Score=30.00 Aligned_cols=47 Identities=13% Similarity=0.289 Sum_probs=33.3
Q ss_pred cccCCcceEEEEecCCc---ceEEEEEeecCCCCCccccccCCeeeEeEEEEecCCHHHHHHHHHhhh
Q 003790 174 HVLPLDDIVSVSYNNGL---RHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 174 ~~l~l~d~~~~~~~~~~---~~~~i~~y~~~k~~~g~~~~~~~~r~~~~~~f~~~~~~~a~~W~~~~~ 238 (795)
.+|.|.+|..|.-.... .-|.|+. | .++|.|.+++.+|.+.|..+|.
T Consensus 50 ~vI~L~~c~~v~~~~d~k~~~~f~i~t-~-----------------dr~f~l~aese~E~~~Wi~~i~ 99 (101)
T cd01257 50 RVIPLESCFNINKRADAKHRHLIALYT-R-----------------DEYFAVAAENEAEQDSWYQALL 99 (101)
T ss_pred EEEEccceEEEeeccccccCeEEEEEe-C-----------------CceEEEEeCCHHHHHHHHHHHh
Confidence 47899999887633222 1244442 1 1479999999999999999983
No 153
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=39.69 E-value=2e+02 Score=28.89 Aligned_cols=73 Identities=15% Similarity=0.168 Sum_probs=48.0
Q ss_pred HHHhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeecC
Q 003790 298 FHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAG 376 (795)
Q Consensus 298 ~~~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~G 376 (795)
+..-++..++..|+++.+..+.... ...+.++++... .+|+||+.+.+......+..|... ++|+-.+...
T Consensus 17 ~~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~-~~d~ii~~~~~~~~~~~~~~l~~~-------~ip~v~~~~~ 88 (264)
T cd01537 17 VLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIAR-GVDGIIIAPSDLTAPTIVKLARKA-------GIPVVLVDRD 88 (264)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHc-CCCEEEEecCCCcchhHHHHhhhc-------CCCEEEeccC
Confidence 3356777888899988877665432 345566665443 579999999886654445555433 5788777666
Q ss_pred Cc
Q 003790 377 SD 378 (795)
Q Consensus 377 TG 378 (795)
..
T Consensus 89 ~~ 90 (264)
T cd01537 89 IP 90 (264)
T ss_pred CC
Confidence 54
No 154
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=39.43 E-value=1e+02 Score=38.57 Aligned_cols=60 Identities=30% Similarity=0.355 Sum_probs=40.5
Q ss_pred hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeecCCcchhhhh
Q 003790 323 HAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (795)
Q Consensus 323 hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArs 384 (795)
+...+++.+... ..|.+|++|||||+.-+. .|.+..+......+|+-.||.==-||+.-+
T Consensus 466 ~~~~i~~~l~~~-~Id~LivIGGdgs~~~a~-~L~~~~~~y~~~~i~vVgIPkTIDNDv~gT 525 (762)
T cd00764 466 DLETIAYNFQKY-GIDGLIIVGGFEAYKGLL-QLREAREQYEEFCIPMVLIPATVSNNVPGT 525 (762)
T ss_pred HHHHHHHHHHHc-CCCEEEEECChhHHHHHH-HHHHHHhhCCCCCccEEEecccccCCCCCC
Confidence 445556666543 479999999999998664 343311111124699999999889998754
No 155
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=38.20 E-value=30 Score=30.99 Aligned_cols=21 Identities=33% Similarity=0.670 Sum_probs=19.2
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003790 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
++|.|.+++.++++.|+++|+
T Consensus 78 r~~~~~a~s~~e~~~Wi~ai~ 98 (101)
T cd01235 78 RTYNFLAENINEAQRWKEKIQ 98 (101)
T ss_pred ceEEEECCCHHHHHHHHHHHH
Confidence 579999999999999999994
No 156
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=38.06 E-value=2.1e+02 Score=29.27 Aligned_cols=66 Identities=20% Similarity=0.127 Sum_probs=40.6
Q ss_pred HhHHHHHHHcCCeEEEEEeCCcch--HHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEe
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSAGH--AKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~gh--A~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGII 373 (795)
..++..+++.|+++.+..+..... ..++.+.+.. ..+|+||+.+++....+.++.+... ++|+-.+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiii~~~~~~~~~~~~~~~~~-------~ipvv~i 86 (270)
T cd01545 19 LGALDACRDTGYQLVIEPCDSGSPDLAERVRALLQR-SRVDGVILTPPLSDNPELLDLLDEA-------GVPYVRI 86 (270)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCchHHHHHHHHHHHH-CCCCEEEEeCCCCCccHHHHHHHhc-------CCCEEEE
Confidence 567788899998887776553322 2233333332 3479999998875335666665443 4666555
No 157
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=38.02 E-value=1e+02 Score=34.52 Aligned_cols=52 Identities=21% Similarity=0.316 Sum_probs=38.5
Q ss_pred HHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeecCCcchhhhh
Q 003790 324 AKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (795)
Q Consensus 324 A~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArs 384 (795)
-..+++.+... ..|.+|++|||||+.-+. .|.+. .+|+--||.==-||+.-+
T Consensus 81 ~~~~~~~l~~~-~Id~Li~IGGdgs~~~a~-~L~e~-------~i~vigiPkTIDNDi~gt 132 (317)
T cd00763 81 QAKAIEQLKKH-GIDALVVIGGDGSYMGAM-RLTEH-------GFPCVGLPGTIDNDIPGT 132 (317)
T ss_pred HHHHHHHHHHc-CCCEEEEECCchHHHHHH-HHHHc-------CCCEEEecccccCCCCCC
Confidence 34455555543 479999999999998764 45443 589999999888998853
No 158
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=37.51 E-value=2.2e+02 Score=29.96 Aligned_cols=66 Identities=20% Similarity=0.204 Sum_probs=39.1
Q ss_pred HhHHHHHHHcCCeEEEEEeCC-cchHHHHHHHhhhcCCCCCeEEEcCchH-HHHHHHHHHcCCCcccCCCccEEEe
Q 003790 300 DIVEPIFKLAGFKLEVVKTTS-AGHAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~-~ghA~ela~~l~~~~~~D~IVvvGGDGT-lnEVvNGL~~r~d~~~a~~iPLGII 373 (795)
+.++..+++.|+.+.+..+.. ...-.++.+.+.. ..+|+||+++.|.. ..+.+..+... ++|+-++
T Consensus 20 ~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiil~~~~~~~~~~~~~~~~~~-------~iPvV~~ 87 (280)
T cd06315 20 EGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIA-LKPDGIVLGGVDAAELQAELELAQKA-------GIPVVGW 87 (280)
T ss_pred HHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHH-cCCCEEEEcCCCHHHHHHHHHHHHHC-------CCCEEEe
Confidence 467778888888776654432 1222344555543 34899999998743 23444444432 4777666
No 159
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=37.06 E-value=98 Score=34.80 Aligned_cols=98 Identities=17% Similarity=0.274 Sum_probs=51.0
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEE--eCCc--chHHHHHHHhhhc-CCCCCeEEEcCchHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVK--TTSA--GHAKNLASTVDIS-SCPDGIICVGGDGIINEVL 353 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~--T~~~--ghA~ela~~l~~~-~~~D~IVvvGGDGTlnEVv 353 (795)
+|++|+..+...+ ...+ +.+...|+.. .+.++. ...+ ....+.++.+... ..+|.||.+|| |++-.+.
T Consensus 24 ~r~lvVtd~~~~~---~g~~-~~v~~~L~~~--~~~~~~~v~~~pt~~~v~~~~~~~~~~~~~~D~IIaiGG-GSviD~a 96 (355)
T TIGR03405 24 RRVVVVTFPEARA---LGLA-RRLEALLGGR--LAALIDDVAPNPDVAQLDGLYARLWGDEGACDLVIALGG-GSVIDTA 96 (355)
T ss_pred CeEEEEECcchhh---cchH-HHHHHHhccC--cEEEeCCCCCCcCHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHH
Confidence 7899998765422 1233 4566677543 333331 1112 2233333333221 12799999998 5655555
Q ss_pred HHH---HcCCCc-------------ccCCCccEEEeec--CCcchhhh
Q 003790 354 NGL---LSRGNQ-------------KEGISIPIGIIPA--GSDNSLVW 383 (795)
Q Consensus 354 NGL---~~r~d~-------------~~a~~iPLGIIP~--GTGNdfAr 383 (795)
-.+ +..++. .....+|+..||. |||--...
T Consensus 97 K~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTagTGSE~t~ 144 (355)
T TIGR03405 97 KVLAVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTTAGTGSEVTP 144 (355)
T ss_pred HHHHHHHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCCCcchhhhcC
Confidence 443 222210 0013579999997 77655544
No 160
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=37.02 E-value=79 Score=35.72 Aligned_cols=98 Identities=17% Similarity=0.249 Sum_probs=54.9
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC--Cc--chHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT--SA--GHAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~--~~--ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
+|++|+..+..-+ ...+ +.+...|+.+|+++.++.-- .+ ....++++.+.. ..+|.||.+|| |.+-.+.-
T Consensus 27 ~~~lvvt~~~~~~---~g~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~d~IIaiGG-GS~~D~aK 100 (374)
T cd08189 27 KKVLIVTDKGLVK---LGLL-DKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRE-NGCDAILAVGG-GSVIDCAK 100 (374)
T ss_pred CeEEEEeCcchhh---cccH-HHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHh-cCCCEEEEeCC-ccHHHHHH
Confidence 6899998765432 1223 46788999999988765211 11 123334443332 34799999999 45555444
Q ss_pred HH---HcCCC----------cccCCCccEEEeec--CCcchhh
Q 003790 355 GL---LSRGN----------QKEGISIPIGIIPA--GSDNSLV 382 (795)
Q Consensus 355 GL---~~r~d----------~~~a~~iPLGIIP~--GTGNdfA 382 (795)
.+ +.++. ......+|+..||. |||--..
T Consensus 101 ~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGsE~t 143 (374)
T cd08189 101 AIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTAGTGSEVT 143 (374)
T ss_pred HHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCCccccccC
Confidence 32 22211 00112379999997 5654443
No 161
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=36.88 E-value=1.3e+02 Score=28.75 Aligned_cols=94 Identities=23% Similarity=0.372 Sum_probs=48.5
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC----------------cchHHHHHHHhhhcCCCCCeEE
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS----------------AGHAKNLASTVDISSCPDGIIC 342 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~----------------~ghA~ela~~l~~~~~~D~IVv 342 (795)
||+++|+=-..-.+...++. +.+...+++.|++++++.... .++..++.+++. ..|+||+
T Consensus 1 Mkilii~gS~r~~~~t~~l~-~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~---~aD~iI~ 76 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLA-EAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLK---EADGIIF 76 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHH-HHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHH---HSSEEEE
T ss_pred CEEEEEECcCCCCCHHHHHH-HHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhcee---cCCeEEE
Confidence 45666653222334444555 578888988899998887654 233444555553 2477766
Q ss_pred EcC--chHHHHHHHHHHcCCC---cccCCCccEEEeecC
Q 003790 343 VGG--DGIINEVLNGLLSRGN---QKEGISIPIGIIPAG 376 (795)
Q Consensus 343 vGG--DGTlnEVvNGL~~r~d---~~~a~~iPLGIIP~G 376 (795)
+.= -|.+...+..++++-. .......+++++-.|
T Consensus 77 ~sP~y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~ 115 (152)
T PF03358_consen 77 ASPVYNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVG 115 (152)
T ss_dssp EEEEBTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEE
T ss_pred eecEEcCcCChhhhHHHHHhccccccccCCCEEEEEEEe
Confidence 542 2334444444443311 112234556666433
No 162
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=36.39 E-value=1.8e+02 Score=30.33 Aligned_cols=66 Identities=8% Similarity=0.086 Sum_probs=40.7
Q ss_pred HhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchH-HHHHHHHHHcCCCcccCCCccEEEe
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGT-lnEVvNGL~~r~d~~~a~~iPLGII 373 (795)
+.++..+++.|+.+.+..+.......+..+.+.. ..+|+||+.+-|.. .-+++..+... .+|+-.+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~-~~~dgiii~~~~~~~~~~~~~~~~~~-------~iPvV~~ 85 (289)
T cd01540 19 KFAKKAAKEKGFTVVKIDVPDGEKVLSAIDNLGA-QGAKGFVICVPDVKLGPAIVAKAKAY-------NMKVVAV 85 (289)
T ss_pred HHHHHHHHHcCCEEEEccCCCHHHHHHHHHHHHH-cCCCEEEEccCchhhhHHHHHHHHhC-------CCeEEEe
Confidence 4677888999988877655532222233444433 34799999998853 33455666543 4676655
No 163
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=36.14 E-value=2.5e+02 Score=29.25 Aligned_cols=65 Identities=14% Similarity=0.166 Sum_probs=40.4
Q ss_pred HhHHHHHHHcCCeEEEEEeCCcchHHHHHHH-hhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEe
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSAGHAKNLAST-VDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~ghA~ela~~-l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGII 373 (795)
..++..+++.|+++.+..+.......+.... +. ....|+||+.+.+=. .+.++.|... .+|+-++
T Consensus 19 ~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~-~~~vdgvi~~~~~~~-~~~~~~l~~~-------~iPvv~~ 84 (269)
T cd06297 19 EGIEGALLEQRYDLALFPLLSLARLKRYLESTTL-AYLTDGLLLASYDLT-ERLAERRLPT-------ERPVVLV 84 (269)
T ss_pred HHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHHHH-hcCCCEEEEecCccC-hHHHHHHhhc-------CCCEEEE
Confidence 5677888889998888776654333344433 33 335899999987633 3445555433 4666555
No 164
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=35.74 E-value=2.3e+02 Score=29.37 Aligned_cols=46 Identities=17% Similarity=0.088 Sum_probs=30.7
Q ss_pred HhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCc
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGD 346 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGD 346 (795)
+.++..+++.|+.+.+..+.......++.+.+... .+|+||+++.+
T Consensus 21 ~gi~~~~~~~gy~~~~~~~~~~~~~~~~~~~l~~~-~vdgiii~~~~ 66 (260)
T cd06304 21 EGLEKAEKELGVEVKYVESVEDADYEPNLRQLAAQ-GYDLIFGVGFG 66 (260)
T ss_pred HHHHHHHHhcCceEEEEecCCHHHHHHHHHHHHHc-CCCEEEECCcc
Confidence 46777888888887766554333344555555433 47999999877
No 165
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=35.55 E-value=2.8e+02 Score=28.36 Aligned_cols=65 Identities=22% Similarity=0.294 Sum_probs=40.6
Q ss_pred HhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEe
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGII 373 (795)
..++..+++.|+.+.++.+.... .-.++.+.+.. ..+|+||+.+.+..- ..++.|... ++|+-++
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~~-~~~~~l~~~-------~ipvV~~ 84 (265)
T cd06299 19 TAIQDAASAAGYSTIIGNSDENPETENRYLDNLLS-QRVDGIIVVPHEQSA-EQLEDLLKR-------GIPVVFV 84 (265)
T ss_pred HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHh-cCCCEEEEcCCCCCh-HHHHHHHhC-------CCCEEEE
Confidence 46777888899988877664322 22334444432 358999999887653 455666543 4676555
No 166
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=35.50 E-value=2.1e+02 Score=29.48 Aligned_cols=66 Identities=17% Similarity=0.089 Sum_probs=39.3
Q ss_pred HhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCchH-HHHHHHHHHcCCCcccCCCccEEEe
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDGT-lnEVvNGL~~r~d~~~a~~iPLGII 373 (795)
+.++..+++.|+++.++.+.... ...+..+.+.. ..+|+||+.+.+.. ..+.+.-+... ++|+-++
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~-~~~dgiii~~~~~~~~~~~l~~~~~~-------~ipvV~~ 86 (277)
T cd06319 19 RGVKSKAKALGYDAVELSAENSAKKELENLRTAID-KGVSGIIISPTNSSAAVTLLKLAAQA-------KIPVVIA 86 (277)
T ss_pred HHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHh-cCCCEEEEcCCchhhhHHHHHHHHHC-------CCCEEEE
Confidence 46677788889888776554322 12233444432 35899998887754 44566555443 4676554
No 167
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=35.27 E-value=2.3e+02 Score=30.01 Aligned_cols=87 Identities=8% Similarity=0.087 Sum_probs=49.5
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC-cchHHHHHHHhhhcCCCCCeEEEcCc-hHHHHHHHH
Q 003790 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS-AGHAKNLASTVDISSCPDGIICVGGD-GIINEVLNG 355 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~-~ghA~ela~~l~~~~~~D~IVvvGGD-GTlnEVvNG 355 (795)
.+.+.||+ |.....-..+++ ..++..+++.|+.+.+..+.. .....++.+.+.. ..+|+||+.+.| ..+.+.+..
T Consensus 26 ~~~I~vi~-~~~~~~f~~~~~-~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~-~~~dgiii~~~~~~~~~~~l~~ 102 (295)
T PRK10653 26 KDTIALVV-STLNNPFFVSLK-DGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTV-RGTKILLINPTDSDAVGNAVKM 102 (295)
T ss_pred CCeEEEEe-cCCCChHHHHHH-HHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHH-cCCCEEEEcCCChHHHHHHHHH
Confidence 44566665 544332233444 467788899999887765532 2223344444433 347888887765 344566655
Q ss_pred HHcCCCcccCCCccEEEee
Q 003790 356 LLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 356 L~~r~d~~~a~~iPLGIIP 374 (795)
+... ++|+-.+-
T Consensus 103 ~~~~-------~ipvV~~~ 114 (295)
T PRK10653 103 ANQA-------NIPVITLD 114 (295)
T ss_pred HHHC-------CCCEEEEc
Confidence 5433 46766664
No 168
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.09 E-value=3e+02 Score=28.29 Aligned_cols=64 Identities=23% Similarity=0.331 Sum_probs=38.8
Q ss_pred HhHHHHHHHcCCeEEEEEeCCcchH-HHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEe
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSAGHA-KNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~ghA-~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGII 373 (795)
+.++..++..|+.+.+..+...... .++.+.+. ...+|+||+.+.+.. ++++.|... ++|+-.+
T Consensus 22 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiii~~~~~~--~~~~~l~~~-------~ipvV~~ 86 (268)
T cd06277 22 RAIEEEAKKYGYNLILKFVSDEDEEEFELPSFLE-DGKVDGIILLGGIST--EYIKEIKEL-------GIPFVLV 86 (268)
T ss_pred HHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHH-HCCCCEEEEeCCCCh--HHHHHHhhc-------CCCEEEE
Confidence 4677888889988877766543321 22333332 235799999987653 446665543 4665544
No 169
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.73 E-value=2.3e+02 Score=30.31 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=42.6
Q ss_pred HhHHHHHHHcCCeEEEEEeCCcch-HHHHHHHhhhcC--CCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEee
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSAGH-AKNLASTVDISS--CPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~gh-A~ela~~l~~~~--~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP 374 (795)
..++..+++.|+.+.+..+....+ ..++.+.+.. . .+|+||+.+.+-...+++..+... ++|+-++=
T Consensus 20 ~gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~-~~~~vdgiIi~~~~~~~~~~~~~~~~~-------giPvV~~~ 89 (305)
T cd06324 20 RFMQAAADDLGIELEVLYAERDRFLMLQQARTILQ-RPDKPDALIFTNEKSVAPELLRLAEGA-------GVKLFLVN 89 (305)
T ss_pred HHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHH-hccCCCEEEEcCCccchHHHHHHHHhC-------CCeEEEEe
Confidence 467778888898887765543222 2344445433 3 589999988765555667766544 57776664
No 170
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=34.36 E-value=39 Score=29.37 Aligned_cols=21 Identities=29% Similarity=0.640 Sum_probs=19.3
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003790 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
+.|.|.+++.++.++|+.+|+
T Consensus 72 ~~~~f~a~s~~~~~~Wi~al~ 92 (94)
T cd01250 72 KTWHFQADSEEERDDWISAIQ 92 (94)
T ss_pred cEEEEECCCHHHHHHHHHHHh
Confidence 579999999999999999984
No 171
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=34.25 E-value=1.8e+02 Score=30.19 Aligned_cols=83 Identities=14% Similarity=0.110 Sum_probs=48.6
Q ss_pred EEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcch---HHHHHHHhhhcCCCCCeEEEcCch-HHHHHHHHH
Q 003790 281 MLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGH---AKNLASTVDISSCPDGIICVGGDG-IINEVLNGL 356 (795)
Q Consensus 281 llVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~gh---A~ela~~l~~~~~~D~IVvvGGDG-TlnEVvNGL 356 (795)
+.||+...+...- ..++ +.++..+++.|+++.+..+...++ ..++.+.+.. ..+|+||+.+.+. ++.+.+..+
T Consensus 2 igvi~~~~~~~~~-~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~~~~~~~ 78 (275)
T cd06320 2 YGVVLKTLSNEFW-RSLK-EGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMIN-KGYKGLLFSPISDVNLVPAVERA 78 (275)
T ss_pred eeEEEecCCCHHH-HHHH-HHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHH-hCCCEEEECCCChHHhHHHHHHH
Confidence 5566654332211 1223 467788888998887766543322 2334444433 3479999888765 456777776
Q ss_pred HcCCCcccCCCccEEEe
Q 003790 357 LSRGNQKEGISIPIGII 373 (795)
Q Consensus 357 ~~r~d~~~a~~iPLGII 373 (795)
... ++|+-.+
T Consensus 79 ~~~-------~iPvV~~ 88 (275)
T cd06320 79 KKK-------GIPVVNV 88 (275)
T ss_pred HHC-------CCeEEEE
Confidence 544 4676655
No 172
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=34.17 E-value=1.4e+02 Score=29.02 Aligned_cols=73 Identities=16% Similarity=0.263 Sum_probs=48.5
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH
Q 003790 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLN 354 (795)
Q Consensus 276 ~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN 354 (795)
...+.+-++-||.++..++... .+..+|...|+++. .+...+ -|....+++ +.+++.+.| ||+-|++.
T Consensus 34 g~i~~vev~~np~~~~~~g~G~---~~a~~l~~~gvdvv--i~~~iG~~a~~~l~~~----GIkv~~~~~--~~V~e~i~ 102 (121)
T COG1433 34 GEIKNVEVIENPAASAEKGAGI---RIAELLVDEGVDVV--IASNIGPNAYNALKAA----GIKVYVAPG--GTVEEAIK 102 (121)
T ss_pred CcEEEEEEeecccccccCcchH---HHHHHHHHcCCCEE--EECccCHHHHHHHHHc----CcEEEecCC--CCHHHHHH
Confidence 3456788899997766555432 35668888887763 333333 344444443 456667666 99999999
Q ss_pred HHHcC
Q 003790 355 GLLSR 359 (795)
Q Consensus 355 GL~~r 359 (795)
.+..-
T Consensus 103 ~~~~g 107 (121)
T COG1433 103 AFLEG 107 (121)
T ss_pred HHhcC
Confidence 98765
No 173
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=34.01 E-value=1.4e+02 Score=34.32 Aligned_cols=48 Identities=15% Similarity=0.323 Sum_probs=38.2
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHH
Q 003790 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNL 327 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~el 327 (795)
.+++..|.|.++|-||..-.. .+.-.|...|.++-++-.+.++.+..+
T Consensus 120 ~~~vIav~n~KGGvGKTTta~--nLA~~LA~~G~rVLlIDlDpQ~~lt~~ 167 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSA--HLAQYLALQGYRVLAVDLDPQASLSAL 167 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHH--HHHHHHHhcCCceEEEcCCCCCCHHHH
Confidence 458999999999999986443 577788899999988888887765543
No 174
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=33.71 E-value=1.2e+02 Score=25.38 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=19.5
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003790 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
+.+.|.+++.++++.|.++|.
T Consensus 78 ~~~~f~~~s~~~~~~W~~~i~ 98 (102)
T smart00233 78 RSYLLQAESEEEREEWVDALR 98 (102)
T ss_pred ceEEEEcCCHHHHHHHHHHHH
Confidence 689999999999999999984
No 175
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=33.60 E-value=2.1e+02 Score=29.60 Aligned_cols=67 Identities=16% Similarity=0.070 Sum_probs=37.4
Q ss_pred HhHHHHHHH--cCCeEEEEEeCCcch-HHHHHHHhhhcCCCCCeEEEcCchH-HHHHHHHHHcCCCcccCCCccEEEee
Q 003790 300 DIVEPIFKL--AGFKLEVVKTTSAGH-AKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 300 ~~I~plL~~--aGi~~~v~~T~~~gh-A~ela~~l~~~~~~D~IVvvGGDGT-lnEVvNGL~~r~d~~~a~~iPLGIIP 374 (795)
..++..+++ .++.+.+..+....+ -.++.+.+. ...+|+||+.+.|.. ..+++..+... ++|+-.+-
T Consensus 19 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~dgiIi~~~~~~~~~~~i~~~~~~-------~ipvv~~~ 89 (271)
T cd06321 19 KGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFI-AAKVDLILLNAVDSKGIAPAVKRAQAA-------GIVVVAVD 89 (271)
T ss_pred HHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHH-HhCCCEEEEeCCChhHhHHHHHHHHHC-------CCeEEEec
Confidence 456778888 444443333332211 112333332 235899999988764 46677666543 46776663
No 176
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.38 E-value=3.1e+02 Score=28.11 Aligned_cols=81 Identities=17% Similarity=0.241 Sum_probs=46.0
Q ss_pred EEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcch-HHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCC
Q 003790 282 LVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGH-AKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRG 360 (795)
Q Consensus 282 lVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~gh-A~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~ 360 (795)
.||+ |.....--..++ ..++..+++.|+++.+..+..... -.++.+.+.. +.+|+||++..|-. ...+..+...
T Consensus 3 ~vi~-~~~~~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~-~~~dgiii~~~~~~-~~~~~~~~~~- 77 (270)
T cd06296 3 GLVF-PDLDSPWASEVL-RGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSA-RRTDGVILVTPELT-SAQRAALRRT- 77 (270)
T ss_pred EEEE-CCCCCccHHHHH-HHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHH-cCCCEEEEecCCCC-hHHHHHHhcC-
Confidence 3444 443332223333 567788888898887776654332 2234455533 34799999887643 2345555433
Q ss_pred CcccCCCccEEEe
Q 003790 361 NQKEGISIPIGII 373 (795)
Q Consensus 361 d~~~a~~iPLGII 373 (795)
++|+-.+
T Consensus 78 ------~ipvV~i 84 (270)
T cd06296 78 ------GIPFVVV 84 (270)
T ss_pred ------CCCEEEE
Confidence 4666555
No 177
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=33.20 E-value=1.8e+02 Score=30.85 Aligned_cols=72 Identities=15% Similarity=0.189 Sum_probs=38.0
Q ss_pred CCCCeEEEEEcCCC-----CCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhh--cCCCC-CeEEEcCch
Q 003790 276 KSPPKMLVILNPRS-----GRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDI--SSCPD-GIICVGGDG 347 (795)
Q Consensus 276 ~r~krllVIvNP~S-----G~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~--~~~~D-~IVvvGGDG 347 (795)
++++++.+|||-.. ....+...=.+.++.+|+..|+++.+..=-...+..+.++++.. ...+| .||+.=|-|
T Consensus 6 ~~~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~~~sHG 85 (243)
T cd00032 6 SKRRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEVEVKNNLTAEEILEELKEFASPDHSDSDSFVCVILSHG 85 (243)
T ss_pred CCCCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHHHhccCCCCCeeEEEECCCC
Confidence 34666666666531 12222222225788999999998866554444444444444432 12245 345555555
No 178
>cd07098 ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and 22A1-like. Aldehyde dehydrogenase family members ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1 (Arabidopsis thaliana, EC=1.2.1.3), and similar sequences, are in this CD. Significant improvement of stress tolerance in tobacco plants was observed by overexpressing the ALDH22A1 gene from maize (Zea mays) and was accompanied by a reduction of malondialdehyde derived from cellular lipid peroxidation.
Probab=33.06 E-value=2.3e+02 Score=32.96 Aligned_cols=91 Identities=18% Similarity=0.250 Sum_probs=53.7
Q ss_pred HhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeecCCcc
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDN 379 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGN 379 (795)
+.+..+|.++|+.-.++..-..+. +....+......|.|+..|+..+-..|......+ ..|+ ++-+| ||
T Consensus 168 ~~~~~~l~~aGlP~gvv~~v~g~~--~~~~~L~~~~~v~~V~ftGs~~~g~~v~~~a~~~-------~~~~-~lelg-G~ 236 (465)
T cd07098 168 SIIRECLAACGHDPDLVQLVTCLP--ETAEALTSHPVIDHITFIGSPPVGKKVMAAAAES-------LTPV-VLELG-GK 236 (465)
T ss_pred HHHHHHHHhcCCCCCeEEEEECCH--HHHHHHhcCCCCCEEEEECCHHHHHHHHHHHHhc-------CCeE-EEECC-CC
Confidence 455667788887633322111111 2333333223468899999999988888876543 1233 45566 77
Q ss_pred hhhhhhcCCCCHHHHHHHHHhCc
Q 003790 380 SLVWTVLGVRDPVSAALAIVKGG 402 (795)
Q Consensus 380 dfArsllGi~dp~~Aa~~IlkG~ 402 (795)
+-+- ++.-.|...|+..|+.+.
T Consensus 237 ~~~i-V~~dadl~~a~~~i~~~~ 258 (465)
T cd07098 237 DPAI-VLDDADLDQIASIIMRGT 258 (465)
T ss_pred CeEE-ECCCCCHHHHHHHHHHHH
Confidence 6653 233467888888888765
No 179
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=32.88 E-value=72 Score=35.75 Aligned_cols=52 Identities=25% Similarity=0.434 Sum_probs=37.7
Q ss_pred HHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeecCCcchhhhh
Q 003790 324 AKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (795)
Q Consensus 324 A~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArs 384 (795)
-.++++.+... ..|.+|++|||||+.-+ +-|.+. .+++--||.==-||+.-+
T Consensus 83 ~~~~~~~l~~~-~Id~LivIGGdgS~~~a-~~L~~~-------gi~vigiPkTIDNDl~gt 134 (324)
T TIGR02483 83 DDKIVANLKEL-GLDALIAIGGDGTLGIA-RRLADK-------GLPVVGVPKTIDNDLEAT 134 (324)
T ss_pred HHHHHHHHHHc-CCCEEEEECCchHHHHH-HHHHhc-------CCCEEeeccccCCCCcCC
Confidence 34555555433 47999999999999755 456542 488888998878999753
No 180
>PRK03202 6-phosphofructokinase; Provisional
Probab=32.70 E-value=1.3e+02 Score=33.83 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=38.4
Q ss_pred HHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeecCCcchhhhh
Q 003790 324 AKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (795)
Q Consensus 324 A~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArs 384 (795)
...+++.+... ..|.+|++|||||+.-+. .|.+. ++++--||.==-||+.-+
T Consensus 82 ~~~~~~~l~~~-~Id~Li~IGGd~s~~~a~-~L~e~-------~i~vigiPkTIDNDl~gt 133 (320)
T PRK03202 82 RAKAIENLKKL-GIDALVVIGGDGSYMGAK-RLTEH-------GIPVIGLPGTIDNDIAGT 133 (320)
T ss_pred HHHHHHHHHHc-CCCEEEEeCChHHHHHHH-HHHhc-------CCcEEEecccccCCCCCC
Confidence 44555555443 479999999999998754 46543 589999999888998843
No 181
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=32.55 E-value=44 Score=30.85 Aligned_cols=22 Identities=18% Similarity=0.661 Sum_probs=20.0
Q ss_pred EeEEEEecCCHHHHHHHHHhhh
Q 003790 217 RKDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 217 ~~~~~f~~~~~~~a~~W~~~~~ 238 (795)
.++|.|.+++.++++.|+++|+
T Consensus 76 ~Rty~l~a~s~~e~~~Wi~ai~ 97 (103)
T cd01251 76 ERKFLFACETEQDRREWIAAFQ 97 (103)
T ss_pred CeEEEEECCCHHHHHHHHHHHH
Confidence 4689999999999999999984
No 182
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=32.36 E-value=1.2e+02 Score=32.86 Aligned_cols=76 Identities=12% Similarity=0.185 Sum_probs=48.1
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHH
Q 003790 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL 356 (795)
..+++.||+||..-.. .. ..+.++...+..|+++..+......+.....+.+.. ..|+| .+..|+++..-...+
T Consensus 130 ~~k~igvl~~~~~~~~--~~-~~~~~~~~a~~~g~~l~~~~v~~~~~~~~~~~~l~~--~~da~-~~~~~~~~~~~~~~i 203 (294)
T PF04392_consen 130 DAKRIGVLYDPSEPNS--VA-QIEQLRKAAKKLGIELVEIPVPSSEDLEQALEALAE--KVDAL-YLLPDNLVDSNFEAI 203 (294)
T ss_dssp T--EEEEEEETT-HHH--HH-HHHHHHHHHHHTT-EEEEEEESSGGGHHHHHHHHCT--T-SEE-EE-S-HHHHHTHHHH
T ss_pred CCCEEEEEecCCCccH--HH-HHHHHHHHHHHcCCEEEEEecCcHhHHHHHHHHhhc--cCCEE-EEECCcchHhHHHHH
Confidence 4589999999886422 22 335677788888999887777777777777776642 35654 457889888766665
Q ss_pred Hc
Q 003790 357 LS 358 (795)
Q Consensus 357 ~~ 358 (795)
..
T Consensus 204 ~~ 205 (294)
T PF04392_consen 204 LQ 205 (294)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 183
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=32.07 E-value=80 Score=35.05 Aligned_cols=52 Identities=23% Similarity=0.372 Sum_probs=37.5
Q ss_pred HHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeecCCcchhhhh
Q 003790 325 KNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (795)
Q Consensus 325 ~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArs 384 (795)
..+++.+... ..|.+|++|||||+.-+ +.|.+. .++|+--||.==-||+.-+
T Consensus 81 ~~~~~~l~~~-~Id~Li~IGGdgs~~~a-~~L~e~------~~i~vigiPkTIDNDl~~t 132 (301)
T TIGR02482 81 QKAVENLKKL-GIEGLVVIGGDGSYTGA-QKLYEE------GGIPVIGLPGTIDNDIPGT 132 (301)
T ss_pred HHHHHHHHHc-CCCEEEEeCCchHHHHH-HHHHHh------hCCCEEeecccccCCCcCc
Confidence 4455555443 47999999999999765 344431 2589999999999998853
No 184
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=32.02 E-value=2.3e+02 Score=35.85 Aligned_cols=95 Identities=18% Similarity=0.248 Sum_probs=0.0
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHH--HcCCeEEEEE----eCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFK--LAGFKLEVVK----TTSAGHAKNLASTVDISSCPDGIICVGGDGIINEV 352 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~--~aGi~~~v~~----T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEV 352 (795)
+|++||..+..-+.... +.+...|+ .+++++.++. -.......++++.+...+ .|.||.+||=-.+--.
T Consensus 481 ~~~lvVtd~~~~~~g~~----~~v~~~L~~~~~~i~~~~~~~v~~np~~~~v~~~~~~~~~~~-~D~IIaiGGGSviD~A 555 (862)
T PRK13805 481 KRAFIVTDRFMVELGYV----DKVTDVLKKRENGVEYEVFSEVEPDPTLSTVRKGAELMRSFK-PDTIIALGGGSPMDAA 555 (862)
T ss_pred CEEEEEECcchhhcchH----HHHHHHHhcccCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC-CCEEEEeCCchHHHHH
Q ss_pred --HHHHHcCCCccc--------------------CCCccEEEeec--CCc
Q 003790 353 --LNGLLSRGNQKE--------------------GISIPIGIIPA--GSD 378 (795)
Q Consensus 353 --vNGL~~r~d~~~--------------------a~~iPLGIIP~--GTG 378 (795)
+..++..+++.. ...+|+..||. |||
T Consensus 556 K~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTagTG 605 (862)
T PRK13805 556 KIMWLFYEHPETDFEDLAQKFMDIRKRIYKFPKLGKKAKLVAIPTTSGTG 605 (862)
T ss_pred HHHHHHHhCCCCCHHHHHHHhcccccccccccccCCCCcEEEeeCCCCcc
No 185
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=31.99 E-value=2.5e+02 Score=28.96 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=39.5
Q ss_pred HhHHHHHHH-cCCeEEEEEeCC-cchHHHHHHHhhhcCCCCCeEEEcCchH-HHHHHHHHHcCCCcccCCCccEEEe
Q 003790 300 DIVEPIFKL-AGFKLEVVKTTS-AGHAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 300 ~~I~plL~~-aGi~~~v~~T~~-~ghA~ela~~l~~~~~~D~IVvvGGDGT-lnEVvNGL~~r~d~~~a~~iPLGII 373 (795)
..++..+++ .|+.+.+..+.. .....++.+.+.. ...|+||+.+.|.. ..+++.-|... ++|+-.+
T Consensus 19 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~~~~~~~~~~~l~~~-------~iPvv~~ 87 (272)
T cd06301 19 NAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIA-QGVDAIIVVPVDTAATAPIVKAANAA-------GIPLVYV 87 (272)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHH-cCCCEEEEecCchhhhHHHHHHHHHC-------CCeEEEe
Confidence 456677777 787776655432 2222344444433 34799999988854 34666666554 4676655
No 186
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=31.82 E-value=1.7e+02 Score=29.65 Aligned_cols=73 Identities=15% Similarity=0.172 Sum_probs=50.6
Q ss_pred hhhHHHhHHHHHHHcCCeEEEEEe---CCcchHHHHHHHhhhcCCCC-CeEEEcCchHHHHHHHHHHcCCCcccCCCccE
Q 003790 295 SKVFHDIVEPIFKLAGFKLEVVKT---TSAGHAKNLASTVDISSCPD-GIICVGGDGIINEVLNGLLSRGNQKEGISIPI 370 (795)
Q Consensus 295 ~ki~~~~I~plL~~aGi~~~v~~T---~~~ghA~ela~~l~~~~~~D-~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPL 370 (795)
..+. +++...|+..|++|++... ..+++..++++++...+ .+ .|.++|+.+-|--|+.++. ..|+
T Consensus 11 ~~~~-~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g-~~viIa~AG~aa~Lpgvva~~t---------~~PV 79 (156)
T TIGR01162 11 LPTM-KKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERG-IKVIIAGAGGAAHLPGMVAALT---------PLPV 79 (156)
T ss_pred HHHH-HHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCC-CeEEEEeCCccchhHHHHHhcc---------CCCE
Confidence 3444 4677789999999988765 33466677887765433 45 4567788888888888874 3567
Q ss_pred EEeecCCc
Q 003790 371 GIIPAGSD 378 (795)
Q Consensus 371 GIIP~GTG 378 (795)
--+|.-++
T Consensus 80 IgvP~~~~ 87 (156)
T TIGR01162 80 IGVPVPSK 87 (156)
T ss_pred EEecCCcc
Confidence 66777553
No 187
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=31.66 E-value=45 Score=28.78 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=19.2
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003790 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
+.+.|.+++.+++++|+++|+
T Consensus 69 ~~~~~~a~s~~e~~~Wi~al~ 89 (91)
T cd01246 69 KTLHLRANSEEERQRWVDALE 89 (91)
T ss_pred CEEEEECCCHHHHHHHHHHHH
Confidence 579999999999999999984
No 188
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=31.45 E-value=3.7e+02 Score=27.61 Aligned_cols=66 Identities=18% Similarity=0.119 Sum_probs=39.9
Q ss_pred HhHHHHHHHcCCeEEEEEeCCcch-HHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEee
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSAGH-AKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~gh-A~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP 374 (795)
+-++..+++.|+.+.++.+..... ..++.+.+.. ..+|+||+++-|-.... +..+... ++|+-++-
T Consensus 19 ~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~-~~vdgii~~~~~~~~~~-~~~~~~~-------~ipvV~~~ 85 (268)
T cd06270 19 SGVESVARKAGKHLIITAGHHSAEKEREAIEFLLE-RRCDALILHSKALSDDE-LIELAAQ-------VPPLVLIN 85 (268)
T ss_pred HHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHHH-cCCCEEEEecCCCCHHH-HHHHhhC-------CCCEEEEe
Confidence 467778899999988776654322 2234444433 45899999987644322 4444332 46766664
No 189
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=31.41 E-value=3.3e+02 Score=27.99 Aligned_cols=66 Identities=18% Similarity=0.162 Sum_probs=40.4
Q ss_pred HhHHHHHHHcCCeEEEEEeCCc-chHHHHHHHhhhcCCCCCeEEEcCchH-HHHHHHHHHcCCCcccCCCccEEEe
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~-ghA~ela~~l~~~~~~D~IVvvGGDGT-lnEVvNGL~~r~d~~~a~~iPLGII 373 (795)
+.++..+++.|+++.++.+... ....++.+.+.. ..+|+||+.+.|.. +.+.+..+... ++|+-.+
T Consensus 20 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiii~~~~~~~~~~~l~~~~~~-------~iPvV~~ 87 (275)
T cd06317 20 KAFQAAAEEDGVEVIVLDANGDVARQAAQVEDLIA-QKVDGIILWPTDGQAYIPGLRKAKQA-------GIPVVIT 87 (275)
T ss_pred HHHHHHHHhcCCEEEEEcCCcCHHHHHHHHHHHHH-cCCCEEEEecCCccccHHHHHHHHHC-------CCcEEEe
Confidence 5677788889988877655422 122334444433 35899999888753 45666666543 4665544
No 190
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=31.19 E-value=65 Score=32.16 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=25.2
Q ss_pred CCCCeEEEcCchHH--------HHHHHHHHcCCCcccCCCccEEEeecCCcchhhh
Q 003790 336 CPDGIICVGGDGII--------NEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVW 383 (795)
Q Consensus 336 ~~D~IVvvGGDGTl--------nEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfAr 383 (795)
.||+||+.||.|+. ...+..+..+ ..+|+-|-.|+. .||+
T Consensus 76 ~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~-------~k~i~~ic~G~~-~La~ 123 (180)
T cd03169 76 DYDALVIPGGRAPEYLRLDEKVLAIVRHFAEA-------NKPVAAICHGPQ-ILAA 123 (180)
T ss_pred HCCEEEEcCCCChhhhccCHHHHHHHHHHHHc-------CCEEEEECcHHH-HHHH
Confidence 37999999997743 2223333322 468888888875 4554
No 191
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=31.01 E-value=1.3e+02 Score=33.26 Aligned_cols=67 Identities=16% Similarity=0.254 Sum_probs=38.3
Q ss_pred EEEEcCCCCCCC-chhhHHHhHHHHHHHcCCeEEEEEeCCc------chH----HHHHHHhhhcCCCCCeEE-EcCchHH
Q 003790 282 LVILNPRSGRGR-SSKVFHDIVEPIFKLAGFKLEVVKTTSA------GHA----KNLASTVDISSCPDGIIC-VGGDGII 349 (795)
Q Consensus 282 lVIvNP~SG~Gk-a~ki~~~~I~plL~~aGi~~~v~~T~~~------ghA----~ela~~l~~~~~~D~IVv-vGGDGTl 349 (795)
.-|+.|.++-.. ....++ .....|+..|+++.+-.+-.. +.. .+|.+.+. +...++|++ .||+|+.
T Consensus 3 I~ivAPS~~~~~~~~~~~~-~~~~~L~~~G~~v~~~~~~~~~~~~~ag~~~~Ra~dL~~a~~-Dp~i~aI~~~rGG~g~~ 80 (308)
T cd07062 3 IAVVSPSSGIPGELPHRLE-RAKKRLENLGFEVVEGPNALKGDKYLSASPEERAEELMAAFA-DPSIKAIIPTIGGDDSN 80 (308)
T ss_pred EEEEeCCCCCcccCHHHHH-HHHHHHHhCCCEEEEecccccccccccCCHHHHHHHHHHHhc-CCCCCEEEECCcccCHh
Confidence 457888887542 134453 445688999998776655322 223 33433332 223566654 5888875
Q ss_pred H
Q 003790 350 N 350 (795)
Q Consensus 350 n 350 (795)
.
T Consensus 81 r 81 (308)
T cd07062 81 E 81 (308)
T ss_pred h
Confidence 4
No 192
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=30.86 E-value=1.6e+02 Score=29.42 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=31.7
Q ss_pred HHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEE
Q 003790 298 FHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIIC 342 (795)
Q Consensus 298 ~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVv 342 (795)
.++.++....+.|++++++.+.+.+...+...++.. .+|+||+
T Consensus 30 i~~~~~~~a~~~g~~v~~~QSN~EGelid~I~~a~~--~~dgiII 72 (140)
T PF01220_consen 30 IEQKCKETAAELGVEVEFFQSNHEGELIDWIHEARD--DVDGIII 72 (140)
T ss_dssp HHHHHHHHHHHTTEEEEEEE-SSHHHHHHHHHHHTC--TTSEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHh--hCCEEEE
Confidence 445666777778999999999999988888777642 2677764
No 193
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=30.84 E-value=1.3e+02 Score=28.99 Aligned_cols=86 Identities=12% Similarity=0.189 Sum_probs=45.5
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEE-EEeCCcchHHHHHHHhhhcCCCCCeEEEc---CchHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEV-VKTTSAGHAKNLASTVDISSCPDGIICVG---GDGIINEVLN 354 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v-~~T~~~ghA~ela~~l~~~~~~D~IVvvG---GDGTlnEVvN 354 (795)
++++|||=...| ...++. +.|+..|...|+++++ +.... ..... .+.. .+|.||+.. |+|.+.+-+.
T Consensus 1 M~i~IiY~S~tG--nTe~iA-~~ia~~l~~~g~~v~~~~~~~~---~~~~~--~~~~-~~d~iilgs~t~~~g~~p~~~~ 71 (140)
T TIGR01754 1 MRILLAYLSLSG--NTEEVA-FMIQDYLQKDGHEVDILHRIGT---LADAP--LDPE-NYDLVFLGTWTWERGRTPDEMK 71 (140)
T ss_pred CeEEEEEECCCC--hHHHHH-HHHHHHHhhCCeeEEecccccc---cccCc--CChh-hCCEEEEEcCeeCCCcCCHHHH
Confidence 478888865555 454555 5777888888887752 21110 00011 1122 268777776 6887664444
Q ss_pred HHHcCCCcccCCCccEEEeecC
Q 003790 355 GLLSRGNQKEGISIPIGIIPAG 376 (795)
Q Consensus 355 GL~~r~d~~~a~~iPLGIIP~G 376 (795)
.++..-.. ....++++-.|
T Consensus 72 ~fl~~l~~---~~k~~avfgtg 90 (140)
T TIGR01754 72 DFIAELGY---KPSNVAIFGTG 90 (140)
T ss_pred HHHHHhcc---cCCEEEEEEcC
Confidence 44432110 13456666554
No 194
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=30.60 E-value=3.7e+02 Score=27.50 Aligned_cols=82 Identities=18% Similarity=0.216 Sum_probs=45.3
Q ss_pred EEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-chHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcC
Q 003790 281 MLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSR 359 (795)
Q Consensus 281 llVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~-ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r 359 (795)
+.|++ |.....--..++ ..++..+++.|+.+.+..+++. ....++.+.+.. ...|+||+++.+.. -.++..|...
T Consensus 2 i~vv~-p~~~~~~~~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiii~~~~~~-~~~~~~l~~~ 77 (268)
T cd06273 2 IGAIV-PTLDNAIFARVI-QAFQETLAAHGYTLLVASSGYDLDREYAQARKLLE-RGVDGLALIGLDHS-PALLDLLARR 77 (268)
T ss_pred eEEEe-CCCCCchHHHHH-HHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHh-cCCCEEEEeCCCCC-HHHHHHHHhC
Confidence 34555 433332222333 4677788889988776554432 223345555543 34799999987654 3444544433
Q ss_pred CCcccCCCccEEEe
Q 003790 360 GNQKEGISIPIGII 373 (795)
Q Consensus 360 ~d~~~a~~iPLGII 373 (795)
++|+-.+
T Consensus 78 -------~iPvv~~ 84 (268)
T cd06273 78 -------GVPYVAT 84 (268)
T ss_pred -------CCCEEEE
Confidence 4665444
No 195
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.47 E-value=3.8e+02 Score=27.41 Aligned_cols=66 Identities=11% Similarity=0.160 Sum_probs=36.4
Q ss_pred HhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEe
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGII 373 (795)
..++..+++.|+.+.+..+.......+.+..+.....+|+||+++.+.. ..++..+... .+|+-.+
T Consensus 24 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~~~~-~~~~~~~~~~-------~ipvV~~ 89 (270)
T cd06294 24 RGISAVANENGYDISLATGKNEEELLEEVKKMIQQKRVDGFILLYSRED-DPIIDYLKEE-------KFPFVVI 89 (270)
T ss_pred HHHHHHHHHCCCEEEEecCCCcHHHHHHHHHHHHHcCcCEEEEecCcCC-cHHHHHHHhc-------CCCEEEE
Confidence 5677788889988766544433222222333222334799999875433 2344444433 4665555
No 196
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.42 E-value=2.5e+02 Score=29.60 Aligned_cols=66 Identities=14% Similarity=0.094 Sum_probs=39.0
Q ss_pred HhHHHHHHHcCCeEEEEE-eCC-cchHHHHHHHhhhcCCCCCeEEEcCchH-HHHHHHHHHcCCCcccCCCccEEEe
Q 003790 300 DIVEPIFKLAGFKLEVVK-TTS-AGHAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~-T~~-~ghA~ela~~l~~~~~~D~IVvvGGDGT-lnEVvNGL~~r~d~~~a~~iPLGII 373 (795)
..++..+++.|+.+.++. ++. .....+..+.+.. ..+|+||+.+.|-. ..++++.+..+ ++|+-++
T Consensus 19 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~-~~~dgiii~~~~~~~~~~~i~~~~~~-------~iPvV~~ 87 (294)
T cd06316 19 RGAKDEFAKLGIEVVATTDAQFDPAKQVADIETTIS-QKPDIIISIPVDPVSTAAAYKKVAEA-------GIKLVFM 87 (294)
T ss_pred HHHHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHH-hCCCEEEEcCCCchhhhHHHHHHHHc-------CCcEEEe
Confidence 456677888898876443 322 1112233344332 35899999887754 35667777654 4676554
No 197
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.34 E-value=1.9e+02 Score=30.26 Aligned_cols=66 Identities=15% Similarity=0.079 Sum_probs=43.3
Q ss_pred HhHHHHHHHcCCeEEEEEeCCc-chHHHHHHHhhhcCCCCCeEEEcCc-hHHHHHHHHHHcCCCcccCCCccEEEe
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGD-GIINEVLNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~-ghA~ela~~l~~~~~~D~IVvvGGD-GTlnEVvNGL~~r~d~~~a~~iPLGII 373 (795)
+.++..+++.|+.+.+..+... ..-.+..+.+.. ...|+||+.+.| +...+++..+... ++|+-++
T Consensus 19 ~gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~-~~vdgiii~~~~~~~~~~~i~~~~~~-------~iPvV~~ 86 (272)
T cd06313 19 QAADEAGKLLGVDVTWYGGALDAVKQVAAIENMAS-QGWDFIAVDPLGIGTLTEAVQKAIAR-------GIPVIDM 86 (272)
T ss_pred HHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHH-cCCCEEEEcCCChHHhHHHHHHHHHC-------CCcEEEe
Confidence 4566778888988877766532 222344555543 347999998766 5667777777654 4677666
No 198
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=30.22 E-value=49 Score=29.58 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=19.2
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003790 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
++|.|.+++.+++++|+++|+
T Consensus 74 ~~~~f~a~s~~e~~~Wi~ai~ 94 (96)
T cd01260 74 KSFYFAAETLDDLSQWVNHLI 94 (96)
T ss_pred cEEEEEeCCHHHHHHHHHHHH
Confidence 578999999999999999984
No 199
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=30.08 E-value=2.7e+02 Score=28.99 Aligned_cols=66 Identities=12% Similarity=-0.029 Sum_probs=39.4
Q ss_pred HhHHHHHHHcCCeEEEEEeCCcc---hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEe
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSAG---HAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~g---hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGII 373 (795)
..++..++..|+.+.+..+.... .-.+..+.+.. ..+|+||+.+.|.+-.+.+..+... ++|+-++
T Consensus 19 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~-~~vdgiI~~~~~~~~~~~~~~~~~~-------giPvV~~ 87 (268)
T cd06306 19 YGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAA-WGADAILLGAVSPDGLNEILQQVAA-------SIPVIAL 87 (268)
T ss_pred HHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHH-cCCCEEEEcCCChhhHHHHHHHHHC-------CCCEEEe
Confidence 45667788889888776544222 22234444433 3589999998876543334444433 5776655
No 200
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=29.88 E-value=2.7e+02 Score=28.29 Aligned_cols=57 Identities=14% Similarity=0.129 Sum_probs=36.7
Q ss_pred HHHHHHHcCCeEEEEEeCCcchHHHHHHHhhh--cCCCCCeEEEcCchHHHHHHHHHHcCC
Q 003790 302 VEPIFKLAGFKLEVVKTTSAGHAKNLASTVDI--SSCPDGIICVGGDGIINEVLNGLLSRG 360 (795)
Q Consensus 302 I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~--~~~~D~IVvvGGDGTlnEVvNGL~~r~ 360 (795)
+...|...|++.. .+...-+..=.+..++. ...+|.+|++.|||=+..+++.|.++.
T Consensus 71 l~~~l~~~Gf~pv--~~kG~~Dv~laIDame~~~~~~iD~~vLvSgD~DF~~Lv~~lre~G 129 (160)
T TIGR00288 71 LIEAVVNQGFEPI--IVAGDVDVRMAVEAMELIYNPNIDAVALVTRDADFLPVINKAKENG 129 (160)
T ss_pred HHHHHHHCCceEE--EecCcccHHHHHHHHHHhccCCCCEEEEEeccHhHHHHHHHHHHCC
Confidence 4567888888753 33332222111222222 245899999999999999999998763
No 201
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=29.63 E-value=2.1e+02 Score=28.14 Aligned_cols=57 Identities=18% Similarity=0.248 Sum_probs=32.8
Q ss_pred HhHHHHHHHcCCeEEEEEeCCcchHHHHHH---HhhhcCCCCCeEEEcCch-----HHHHHHHHHH
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSAGHAKNLAS---TVDISSCPDGIICVGGDG-----IINEVLNGLL 357 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~ghA~ela~---~l~~~~~~D~IVvvGGDG-----TlnEVvNGL~ 357 (795)
..++.+|++.|+++....+- +++..++.+ ++..+..+|.||+.||=| -+.+++..+.
T Consensus 23 ~~l~~~l~~~G~~v~~~~~v-~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g~~D~t~~al~~~~ 87 (152)
T cd00886 23 PALVELLEEAGHEVVAYEIV-PDDKDEIREALIEWADEDGVDLILTTGGTGLAPRDVTPEATRPLL 87 (152)
T ss_pred HHHHHHHHHcCCeeeeEEEc-CCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCcCcHHHHHHHh
Confidence 46788999999876544332 223333333 332211479999999954 2444555544
No 202
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=29.62 E-value=3e+02 Score=28.04 Aligned_cols=82 Identities=17% Similarity=0.236 Sum_probs=47.1
Q ss_pred EEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCC-cchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCC
Q 003790 282 LVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTS-AGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRG 360 (795)
Q Consensus 282 lVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~-~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~ 360 (795)
.||+ |.....-... +.+.++..+++.|+.+.+..+.. .....++.+.+.. ..+|+||+++.+....++++.+...
T Consensus 3 ~vi~-~~~~~~~~~~-~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~-~~vdgiii~~~~~~~~~~~~~~~~~- 78 (268)
T cd06289 3 GLVI-NDLTNPFFAE-LAAGLEEVLEEAGYTVFLANSGEDVERQEQLLSTMLE-HGVAGIILCPAAGTSPDLLKRLAES- 78 (268)
T ss_pred EEEe-cCCCcchHHH-HHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHH-cCCCEEEEeCCCCccHHHHHHHHhc-
Confidence 3444 5444333333 33567778888898876654432 2223345555543 3579999998776544566666543
Q ss_pred CcccCCCccEEEe
Q 003790 361 NQKEGISIPIGII 373 (795)
Q Consensus 361 d~~~a~~iPLGII 373 (795)
++|+-.+
T Consensus 79 ------~ipvV~~ 85 (268)
T cd06289 79 ------GIPVVLV 85 (268)
T ss_pred ------CCCEEEE
Confidence 4666655
No 203
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=29.58 E-value=93 Score=36.64 Aligned_cols=55 Identities=25% Similarity=0.308 Sum_probs=39.3
Q ss_pred hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHH---HHHcCCCcccCCCccEEEeecCCcchhhh
Q 003790 323 HAKNLASTVDISSCPDGIICVGGDGIINEVLN---GLLSRGNQKEGISIPIGIIPAGSDNSLVW 383 (795)
Q Consensus 323 hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvN---GL~~r~d~~~a~~iPLGIIP~GTGNdfAr 383 (795)
+..++++.+... +.|.++++|||||+.-+.. .+..+ ..++++--||.==-||+.-
T Consensus 164 ~~~~iv~~L~~~-~I~~L~vIGGdgT~~~A~~L~ee~~~~-----g~~I~VIGIPKTIDNDI~~ 221 (459)
T PTZ00286 164 DPKVMVDTLIRH-GINILFTLGGDGTHRGALAIYKELRRR-----KLNISVVGIPKTIDNDIPI 221 (459)
T ss_pred hHHHHHHHHHHc-CCCEEEEeCCchHHHHHHHHHHHHHHh-----CCCceEEEeccccCCCCCC
Confidence 456666666543 4799999999999976532 22223 2368999999988899874
No 204
>PRK05568 flavodoxin; Provisional
Probab=29.55 E-value=1.6e+02 Score=27.90 Aligned_cols=68 Identities=16% Similarity=0.257 Sum_probs=42.1
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcC---c-----hHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGG---D-----GIIN 350 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGG---D-----GTln 350 (795)
++++|||-. +.|...++. +.|...++..|++++++....... . ++. .+|.||++.. . +.+.
T Consensus 2 ~~~~IvY~S--~~GnT~~~a-~~i~~~~~~~g~~v~~~~~~~~~~-~----~~~---~~d~iilgsp~y~~~~~~~~~~~ 70 (142)
T PRK05568 2 KKINIIYWS--GTGNTEAMA-NLIAEGAKENGAEVKLLNVSEASV-D----DVK---GADVVALGSPAMGDEVLEEGEME 70 (142)
T ss_pred CeEEEEEEC--CCchHHHHH-HHHHHHHHHCCCeEEEEECCCCCH-H----HHH---hCCEEEEECCccCcccccchhHH
Confidence 568899955 445555555 467777888899888776554332 1 221 2687777652 2 4566
Q ss_pred HHHHHHH
Q 003790 351 EVLNGLL 357 (795)
Q Consensus 351 EVvNGL~ 357 (795)
..++.+.
T Consensus 71 ~f~~~~~ 77 (142)
T PRK05568 71 PFVESIS 77 (142)
T ss_pred HHHHHhh
Confidence 6666653
No 205
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=29.49 E-value=4.7e+02 Score=26.62 Aligned_cols=77 Identities=18% Similarity=0.185 Sum_probs=47.0
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC--CcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHH
Q 003790 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT--SAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~--~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNG 355 (795)
.+++.+|+.... .+. .. .+.+...++++|+++.....- ...+....+.++... .+|.|++++.......++..
T Consensus 135 ~~~i~~v~~~~~-~~~--~~-~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~-~~~~vi~~~~~~~~~~~~~~ 209 (298)
T cd06268 135 VKKVAIIYDDYA-YGR--GL-AAAFREALKKLGGEVVAEETYPPGATDFSPLIAKLKAA-GPDAVFLAGYGGDAALFLKQ 209 (298)
T ss_pred CCEEEEEEcCCc-hhH--HH-HHHHHHHHHHcCCEEEEEeccCCCCccHHHHHHHHHhc-CCCEEEEccccchHHHHHHH
Confidence 467888876544 222 22 256777888888776433222 223456666666433 46877777665777778888
Q ss_pred HHcC
Q 003790 356 LLSR 359 (795)
Q Consensus 356 L~~r 359 (795)
+...
T Consensus 210 ~~~~ 213 (298)
T cd06268 210 AREA 213 (298)
T ss_pred HHHc
Confidence 7654
No 206
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=29.39 E-value=3.8e+02 Score=26.91 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=42.2
Q ss_pred HHHhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEe
Q 003790 298 FHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 298 ~~~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGII 373 (795)
+.+.++..+++.|+.+.++...... ...+.++.+.. ..+|+||+.+.|.+... +..+... ++|+-.+
T Consensus 17 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~iii~~~~~~~~~-~~~~~~~-------~ipvv~~ 84 (264)
T cd06267 17 LLRGIEEAAREAGYSVLLCNSDEDPEKEREALELLLS-RRVDGIILAPSRLDDEL-LEELAAL-------GIPVVLV 84 (264)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHH-cCcCEEEEecCCcchHH-HHHHHHc-------CCCEEEe
Confidence 3356777788888888766554321 23445555543 35899999999987655 5544433 4676555
No 207
>PRK14071 6-phosphofructokinase; Provisional
Probab=29.22 E-value=1.5e+02 Score=33.87 Aligned_cols=52 Identities=27% Similarity=0.340 Sum_probs=36.9
Q ss_pred HHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeecCCcchhhhh
Q 003790 325 KNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (795)
Q Consensus 325 ~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArs 384 (795)
.++++.+... ..|.+|++|||||+. .++.|.+. .++++--||.==-||+..+
T Consensus 97 ~~~~~~l~~~-~Id~Li~IGGdgS~~-~a~~L~~~------~~i~vIgiPkTIDNDl~~t 148 (360)
T PRK14071 97 QEIIDGYHSL-GLDALIGIGGDGSLA-ILRRLAQQ------GGINLVGIPKTIDNDVGAT 148 (360)
T ss_pred HHHHHHHHHc-CCCEEEEECChhHHH-HHHHHHHh------cCCcEEEecccccCCCcCc
Confidence 3444555432 479999999999986 44556542 2589999998888998754
No 208
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=29.16 E-value=3.4e+02 Score=28.99 Aligned_cols=65 Identities=15% Similarity=0.109 Sum_probs=39.6
Q ss_pred HhHHHHHHH--cCCeEEEEEeCCcchH--HHHHHHhhhcCCCCCeEEEcCchH-HHHHHHHHHcCCCcccCCCccEEEe
Q 003790 300 DIVEPIFKL--AGFKLEVVKTTSAGHA--KNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 300 ~~I~plL~~--aGi~~~v~~T~~~ghA--~ela~~l~~~~~~D~IVvvGGDGT-lnEVvNGL~~r~d~~~a~~iPLGII 373 (795)
+.++..++. .|+.+.+..+.. +.+ .++.+.+.. ..+|+||+++.|.. +..+++.+... .+|+-++
T Consensus 19 ~gi~~~a~~~~~g~~~~~~~~~~-~~~~q~~~i~~l~~-~~vdgiii~~~~~~~~~~~~~~~~~~-------giPvV~~ 88 (303)
T cd01539 19 KNLEDIQKENGGKVEFTFYDAKN-NQSTQNEQIDTALA-KGVDLLAVNLVDPTAAQTVINKAKQK-------NIPVIFF 88 (303)
T ss_pred HHHHHHHHhhCCCeeEEEecCCC-CHHHHHHHHHHHHH-cCCCEEEEecCchhhHHHHHHHHHHC-------CCCEEEe
Confidence 456777777 666665554432 222 233444433 35899999988875 56777776543 4676665
No 209
>PLN02564 6-phosphofructokinase
Probab=29.11 E-value=1.3e+02 Score=35.81 Aligned_cols=59 Identities=15% Similarity=0.319 Sum_probs=38.5
Q ss_pred hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeecCCcchhhhh
Q 003790 323 HAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (795)
Q Consensus 323 hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArs 384 (795)
+..++++.+... +.|.+|++|||||+.-+.. |.+.- .+...++++.-||.==-||+.-+
T Consensus 164 ~~~~iv~~L~~~-~Id~LivIGGDGS~~gA~~-L~e~~-~~~g~~i~VIGIPKTIDNDI~~t 222 (484)
T PLN02564 164 DTSKIVDSIQDR-GINQVYIIGGDGTQKGASV-IYEEI-RRRGLKVAVAGIPKTIDNDIPVI 222 (484)
T ss_pred hHHHHHHHHHHh-CCCEEEEECCchHHHHHHH-HHHHH-HHcCCCceEEEecccccCCCcCc
Confidence 455666666543 4799999999999976532 32200 00123566888898888998743
No 210
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=29.07 E-value=1e+02 Score=29.02 Aligned_cols=58 Identities=21% Similarity=0.265 Sum_probs=30.4
Q ss_pred hHHHHHHHcCCeEEEEEeC-----Ccch-----HHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcC
Q 003790 301 IVEPIFKLAGFKLEVVKTT-----SAGH-----AKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSR 359 (795)
Q Consensus 301 ~I~plL~~aGi~~~v~~T~-----~~gh-----A~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r 359 (795)
.+...|+..|+.+...... ..+. +.++.+.+. ...+|.||++.||+=+-.+++.|..+
T Consensus 51 ~~~~~L~~~g~~v~~~~~~~~~~~~k~~~D~~l~~d~~~~~~-~~~~d~ivLvSgD~Df~~~v~~l~~~ 118 (146)
T PF01936_consen 51 SFQEALQRAGIKVRHFPLRKRGGGGKKGVDVALAVDILELAY-ENPPDTIVLVSGDSDFAPLVRKLRER 118 (146)
T ss_dssp HHHHHHHHHT-EEEE------S---S---HHHHHHHHHHHG---GG-SEEEEE---GGGHHHHHHHHHH
T ss_pred hHHHHHHhCeeeEEeeecccccccccCCcHHHHHHHHHHHhh-ccCCCEEEEEECcHHHHHHHHHHHHc
Confidence 4456788999876555431 1111 122223222 12369999999999999999999865
No 211
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=28.92 E-value=1.3e+02 Score=34.32 Aligned_cols=69 Identities=16% Similarity=0.302 Sum_probs=45.7
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-------chHHHHHHHhhhcCCCCCeEEEcCchHH
Q 003790 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-------GHAKNLASTVDISSCPDGIICVGGDGII 349 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~-------ghA~ela~~l~~~~~~D~IVvvGGDGTl 349 (795)
-.|+.+++-.|.=-+-- .+ +.++..|++.+|.|+++.-... .+|.+++++ +.+|.+|++|| |..
T Consensus 69 gaKk~llvTDkni~~~~---~~-~~a~~~L~~~~I~~~vyD~v~~ePtv~s~~~alefak~----~~fDs~vaiGG-GSa 139 (465)
T KOG3857|consen 69 GAKKTLLVTDKNIAKLG---LV-KVAQDSLEENGINVEVYDKVQPEPTVGSVTAALEFAKK----KNFDSFVAIGG-GSA 139 (465)
T ss_pred CccceEEeeCCChhhcc---cH-HHHHHHHHHcCCceEEecCccCCCchhhHHHHHHHHHh----cccceEEEEcC-cch
Confidence 45778888776543322 23 4677899999999998754333 356666664 45899999999 444
Q ss_pred HHHHH
Q 003790 350 NEVLN 354 (795)
Q Consensus 350 nEVvN 354 (795)
+....
T Consensus 140 ~DtaK 144 (465)
T KOG3857|consen 140 HDTAK 144 (465)
T ss_pred hhhHH
Confidence 44433
No 212
>PRK05670 anthranilate synthase component II; Provisional
Probab=28.05 E-value=1e+02 Score=31.26 Aligned_cols=48 Identities=19% Similarity=0.273 Sum_probs=33.1
Q ss_pred HHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHH
Q 003790 298 FHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINE 351 (795)
Q Consensus 298 ~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnE 351 (795)
|...+...|++.|++++++.....+ ..++ ..+ .+|+||+.||-|+.++
T Consensus 11 f~~~i~~~l~~~g~~~~v~~~~~~~-~~~~-~~~----~~dglIlsgGpg~~~d 58 (189)
T PRK05670 11 FTYNLVQYLGELGAEVVVYRNDEIT-LEEI-EAL----NPDAIVLSPGPGTPAE 58 (189)
T ss_pred hHHHHHHHHHHCCCcEEEEECCCCC-HHHH-HhC----CCCEEEEcCCCCChHH
Confidence 3345777899999998887654322 2222 222 2799999999999865
No 213
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=28.02 E-value=1.8e+02 Score=34.26 Aligned_cols=58 Identities=19% Similarity=0.378 Sum_probs=38.3
Q ss_pred hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeecCCcchhhh
Q 003790 323 HAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVW 383 (795)
Q Consensus 323 hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfAr 383 (795)
+..++++.+... +.|.++++|||||+.-+.. |.+.- .....++++--||.==-||+.-
T Consensus 160 ~~~~iv~~L~~~-~I~~L~vIGGdgT~~gA~~-l~ee~-~~~g~~I~VIGIPKTIDNDi~~ 217 (443)
T PRK06830 160 DPEEIVDTLERM-NINILFVIGGDGTLRGASA-IAEEI-ERRGLKISVIGIPKTIDNDINF 217 (443)
T ss_pred hHHHHHHHHHHc-CCCEEEEeCCchHHHHHHH-HHHHH-HHhCCCceEEEeccccCCCCcC
Confidence 345566666543 4799999999999976543 32200 0012358888899888899874
No 214
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=27.98 E-value=2.3e+02 Score=30.18 Aligned_cols=35 Identities=11% Similarity=0.236 Sum_probs=23.2
Q ss_pred CCCCeEEEcCchH---------HHHHHHHHHcCCCcccCCCccEEEeecCC
Q 003790 336 CPDGIICVGGDGI---------INEVLNGLLSRGNQKEGISIPIGIIPAGS 377 (795)
Q Consensus 336 ~~D~IVvvGGDGT---------lnEVvNGL~~r~d~~~a~~iPLGIIP~GT 377 (795)
.||+|++.||=|. +.+++....+. +-++|.|=.|.
T Consensus 94 dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~-------gK~iaAIChgp 137 (231)
T cd03147 94 DYGIFFVAGGHGTLFDFPHATNLQKIAQQIYAN-------GGVVAAVCHGP 137 (231)
T ss_pred hCcEEEECCCCchhhhcccCHHHHHHHHHHHHc-------CCEEEEEChHH
Confidence 4899999999775 34455555443 35777776665
No 215
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=27.86 E-value=4.1e+02 Score=27.14 Aligned_cols=65 Identities=14% Similarity=0.212 Sum_probs=39.3
Q ss_pred HhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEe
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGII 373 (795)
+.++..+++.|+.+.+..+.... ...++.+.+.. ..+|+||+++.+.+ .+++..|... .+|+-.+
T Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~~~-~~~~~~l~~~-------~ipvV~~ 84 (268)
T cd06298 19 RGIDDIATMYKYNIILSNSDNDKEKELKVLNNLLA-KQVDGIIFMGGKIS-EEHREEFKRS-------PTPVVLA 84 (268)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHH-hcCCEEEEeCCCCc-HHHHHHHhcC-------CCCEEEE
Confidence 46777888889888777664322 22344455433 35899999976543 3455555432 4666444
No 216
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=27.79 E-value=1.7e+02 Score=27.57 Aligned_cols=59 Identities=22% Similarity=0.389 Sum_probs=39.3
Q ss_pred eeeecceeeeccc-----------ccCCcceEEEEecCC---cceEEEEEeecCCCCCccccccCCeeeEeEEEEecCCH
Q 003790 162 AKLTSKALVWGSH-----------VLPLDDIVSVSYNNG---LRHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTT 227 (795)
Q Consensus 162 ~~~~~~~~~~~~~-----------~l~l~d~~~~~~~~~---~~~~~i~~y~~~k~~~g~~~~~~~~r~~~~~~f~~~~~ 227 (795)
.=|=++.|++|+. .++|++|--.....+ ..-|.|++ ..+.|.+.++|.
T Consensus 23 ffLFnD~LvY~~~~~~~~~~~~~~~i~L~~~~v~~~~d~~~~~n~f~I~~------------------~~kSf~v~A~s~ 84 (104)
T cd01218 23 FFLFNDILVYGNIVISKKKYNKQHILPLEGVQVESIEDDGIERNGWIIKT------------------PTKSFAVYAATE 84 (104)
T ss_pred EEEecCEEEEEEeecCCceeeEeeEEEccceEEEecCCcccccceEEEec------------------CCeEEEEEcCCH
Confidence 5567778888753 466766643333222 12355553 235799999999
Q ss_pred HHHHHHHHhhh
Q 003790 228 EEAIQWVGGFA 238 (795)
Q Consensus 228 ~~a~~W~~~~~ 238 (795)
+|-.+|.+.|.
T Consensus 85 ~eK~eWl~~i~ 95 (104)
T cd01218 85 TEKREWMLHIN 95 (104)
T ss_pred HHHHHHHHHHH
Confidence 99999999984
No 217
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=27.53 E-value=3.5e+02 Score=28.79 Aligned_cols=66 Identities=20% Similarity=0.101 Sum_probs=39.6
Q ss_pred HhHHHHHHHcCCeEEEE-EeCC-cchHHHHHHHhhhcCCCCCeEEEcCchH-HHHHHHHHHcCCCcccCCCccEEEe
Q 003790 300 DIVEPIFKLAGFKLEVV-KTTS-AGHAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~-~T~~-~ghA~ela~~l~~~~~~D~IVvvGGDGT-lnEVvNGL~~r~d~~~a~~iPLGII 373 (795)
+.++..+++.|+.+.++ .+.. .....++.+.+.. ..+|+||+++.+-. +.+++..+... .+|+-++
T Consensus 19 ~gi~~~a~~~g~~v~~~~~~~~d~~~~~~~i~~~~~-~~~DgiIi~~~~~~~~~~~~~~~~~~-------~iPvV~v 87 (298)
T cd06302 19 EGAKEAAKELGVDAIYVGPTTADAAGQVQIIEDLIA-QGVDAIAVVPNDPDALEPVLKKAREA-------GIKVVTH 87 (298)
T ss_pred HHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHh-cCCCEEEEecCCHHHHHHHHHHHHHC-------CCeEEEE
Confidence 56777888889887764 3332 2222334444432 35899999987744 35556655433 4676665
No 218
>COG0014 ProA Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]
Probab=27.03 E-value=1e+02 Score=35.70 Aligned_cols=95 Identities=22% Similarity=0.362 Sum_probs=69.7
Q ss_pred HHhHHHHHHHcCCe---EEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeec
Q 003790 299 HDIVEPIFKLAGFK---LEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 299 ~~~I~plL~~aGi~---~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~ 375 (795)
.+.|+..|..+++. +.++.++......++.+ + .++.|.||==||-|.+..|.+.- .+| +|-.
T Consensus 159 ~~~i~~aL~~~~lP~~aVqli~~~~R~~v~~ll~-l--~~yiD~iIPRGg~~Li~~v~~~a----------~vP--Vi~~ 223 (417)
T COG0014 159 VEVIQEALEKAGLPADAVQLIEDTDREEVLELLR-L--DGYIDLVIPRGGAGLIRRVVENA----------TVP--VIEH 223 (417)
T ss_pred HHHHHHHHHHcCCCHHHhhhccCCCHHHHHHHHh-h--cCceeEEEcCCcHHHHHHHHhCC----------cCC--EEec
Confidence 35777888888864 56777777777777776 3 34679999999999999987631 344 6778
Q ss_pred CCcchhhhhhcCCCCHHHHHHHHHhCceeEEeEE
Q 003790 376 GSDNSLVWTVLGVRDPVSAALAIVKGGLTATDVF 409 (795)
Q Consensus 376 GTGNdfArsllGi~dp~~Aa~~IlkG~~~~IDlg 409 (795)
|.||.-.. +-.-.|+..|...++++++++-+++
T Consensus 224 ~~G~CHiy-vd~~ADld~A~~ii~nAKtqrPs~C 256 (417)
T COG0014 224 GVGNCHIY-VDESADLDKALKIIVNAKTQRPSVC 256 (417)
T ss_pred CcceEEEE-ecccCCHHHHHHHHHcccCCCCccc
Confidence 88887653 2234688999999999987755544
No 219
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=26.98 E-value=2.2e+02 Score=27.00 Aligned_cols=61 Identities=15% Similarity=0.276 Sum_probs=36.1
Q ss_pred CCeEEE-EEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe---CCcchHHHHHHHhhhcCCCCCeEE
Q 003790 278 PPKMLV-ILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT---TSAGHAKNLASTVDISSCPDGIIC 342 (795)
Q Consensus 278 ~krllV-IvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T---~~~ghA~ela~~l~~~~~~D~IVv 342 (795)
..++.+ .++. ..+...|.+.....++..|+.++++.. ....+..+..+++..+...++|++
T Consensus 29 ~P~Laii~vg~----d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~~V~GIlv 93 (117)
T PF00763_consen 29 TPKLAIILVGD----DPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNEDPSVHGILV 93 (117)
T ss_dssp --EEEEEEES------HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-TT-SEEEE
T ss_pred CcEEEEEecCC----ChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCCCCCEEEE
Confidence 344444 4443 345667877888899999999988776 334445555666655555677765
No 220
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=26.85 E-value=1.5e+02 Score=28.19 Aligned_cols=66 Identities=21% Similarity=0.292 Sum_probs=37.3
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc----hHHHHHHH--hhh--cCCCCCeEEEcCchHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG----HAKNLAST--VDI--SSCPDGIICVGGDGII 349 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g----hA~ela~~--l~~--~~~~D~IVvvGGDGTl 349 (795)
+|+.||+.|.. ....+ ..+...|+.+++++.++..+... ....+..+ ++. ...+|.|++.||.+..
T Consensus 2 ~~v~ill~~g~---~~~e~--~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~ 75 (142)
T cd03132 2 RKVGILVADGV---DAAEL--SALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAA 75 (142)
T ss_pred CEEEEEEcCCc---CHHHH--HHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCH
Confidence 56888887733 22232 24567899999988776543210 00011111 110 1137999999998764
No 221
>cd07104 ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) involved in the oxidation of benzyl alcohol to benzoate; p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes the oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid; vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid as seen in Pseudomonas putida KT2440; and other related sequences.
Probab=26.84 E-value=2.8e+02 Score=31.67 Aligned_cols=91 Identities=18% Similarity=0.149 Sum_probs=54.3
Q ss_pred hHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeecCCcch
Q 003790 301 IVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNS 380 (795)
Q Consensus 301 ~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNd 380 (795)
.+..+|.++|+.-.++..-. +...++...+......|.|+..|+..+...|....... ..--++-+| ||+
T Consensus 144 ~l~~~l~~aGlP~gvv~~v~-g~~~~~~~~L~~~~~i~~V~ftGs~~~g~~v~~~aa~~--------~~~~~lelg-G~~ 213 (431)
T cd07104 144 LIAEIFEEAGLPKGVLNVVP-GGGSEIGDALVEHPRVRMISFTGSTAVGRHIGELAGRH--------LKKVALELG-GNN 213 (431)
T ss_pred HHHHHHHHcCCCcccEEEee-CCchhHHHHHhcCCCCCEEEEECCHHHHHHHHHHHhhc--------CCcEEEEcC-CCC
Confidence 46678888887643332211 11122333433223478999999999998888765543 222244556 777
Q ss_pred hhhhhcCCCCHHHHHHHHHhCc
Q 003790 381 LVWTVLGVRDPVSAALAIVKGG 402 (795)
Q Consensus 381 fArsllGi~dp~~Aa~~IlkG~ 402 (795)
-+- +..-.|+..|+..|+.+.
T Consensus 214 ~~i-V~~dadl~~aa~~i~~~~ 234 (431)
T cd07104 214 PLI-VLDDADLDLAVSAAAFGA 234 (431)
T ss_pred eEE-ECCCCCHHHHHHHHHHHH
Confidence 652 233357888888888755
No 222
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=26.80 E-value=3e+02 Score=28.07 Aligned_cols=66 Identities=20% Similarity=0.161 Sum_probs=39.6
Q ss_pred HhHHHHHHHcCCeEEEEEeCCc-chHHHHHHHhhhcCCCCCeEEEcCchH-HHHHHHHHHcCCCcccCCCccEEEe
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~-ghA~ela~~l~~~~~~D~IVvvGGDGT-lnEVvNGL~~r~d~~~a~~iPLGII 373 (795)
..++..+++.|+.+.+..+... ....++.+.+... .+|+||+++-+.. ..+++..|... ++|+-.+
T Consensus 19 ~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~~dgii~~~~~~~~~~~~l~~l~~~-------~ipvv~~ 86 (268)
T cd06323 19 DGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLITR-GVDAIIINPTDSDAVVPAVKAANEA-------GIPVFTI 86 (268)
T ss_pred HHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHHc-CCCEEEEcCCChHHHHHHHHHHHHC-------CCcEEEE
Confidence 4677888888988876655432 2233455555433 4799888765543 34566665443 4676555
No 223
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=26.57 E-value=1.2e+02 Score=34.16 Aligned_cols=56 Identities=18% Similarity=0.180 Sum_probs=36.4
Q ss_pred HHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeecCCcchhhh
Q 003790 325 KNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVW 383 (795)
Q Consensus 325 ~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfAr 383 (795)
..+++.+... ..|.+|++|||||+.-+.. |.+.- .++..++++--||.==-||+.-
T Consensus 82 ~~~~~~l~~~-~I~~Lv~IGGd~s~~~a~~-L~e~~-~~~~~~i~vigiPkTIDNDl~~ 137 (338)
T cd00363 82 AKAAENLKKH-GIDALVVIGGDGSYTGADL-LTEEW-PSKYQGFNVIGLPGTIDNDIKG 137 (338)
T ss_pred HHHHHHHHHh-CCCEEEEeCCHHHHHHHHH-HHHHH-HhcCCCccEEEeeecccCCCcC
Confidence 4455555443 4799999999999976532 32210 0112368999999766799873
No 224
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=26.45 E-value=60 Score=29.65 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=19.1
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003790 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
++|.|.++|.++.+.|+++|.
T Consensus 75 rt~~~~A~s~~e~~~Wi~ai~ 95 (100)
T cd01233 75 RGYLFQALSDKEMIDWLYALN 95 (100)
T ss_pred CEEEEEcCCHHHHHHHHHHhh
Confidence 569999999999999999983
No 225
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=26.35 E-value=4.2e+02 Score=28.92 Aligned_cols=90 Identities=11% Similarity=0.045 Sum_probs=49.2
Q ss_pred CCCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcC-CeEEEEEeCCc-chHHHHHHHhhhcCCCCCeEEEcCchH-HHH
Q 003790 275 CKSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAG-FKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGI-INE 351 (795)
Q Consensus 275 ~~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aG-i~~~v~~T~~~-ghA~ela~~l~~~~~~D~IVvvGGDGT-lnE 351 (795)
+...+.+.|++.-.+ ..-..++. ..++..+++.| +.+.+..+... ....+..+.+.. ..+|+||+++.|.. ..+
T Consensus 21 ~~~~~~Igvv~~~~~-~~f~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~~ 97 (330)
T PRK15395 21 AAADTRIGVTIYKYD-DNFMSVVR-KAIEKDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLA-KGVKALAINLVDPAAAPT 97 (330)
T ss_pred hcCCceEEEEEecCc-chHHHHHH-HHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH-cCCCEEEEeccCHHHHHH
Confidence 346677888875332 22222333 45666777765 44444333221 122234444433 35899999988875 555
Q ss_pred HHHHHHcCCCcccCCCccEEEee
Q 003790 352 VLNGLLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 352 VvNGL~~r~d~~~a~~iPLGIIP 374 (795)
++.-+... .+|+-++-
T Consensus 98 ~l~~l~~~-------giPvV~vd 113 (330)
T PRK15395 98 VIEKARGQ-------DVPVVFFN 113 (330)
T ss_pred HHHHHHHC-------CCcEEEEc
Confidence 66666543 57777663
No 226
>cd07086 ALDH_F7_AASADH-like NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD+-dependent, alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1, ALDH7B or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), and other similar sequences, such as the uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105).
Probab=26.28 E-value=2.9e+02 Score=32.35 Aligned_cols=108 Identities=15% Similarity=0.151 Sum_probs=57.9
Q ss_pred EEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeC-CcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCC
Q 003790 283 VILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTT-SAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGN 361 (795)
Q Consensus 283 VIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~-~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d 361 (795)
||+-|..-.-.....+.+.+...|.++|+.-.++..- ..++ +...+......|.|+..|+-.|-..|......+
T Consensus 164 VIlKps~~~p~~~~~l~~~~~~al~~~glP~gvv~~v~g~~~---~~~~L~~~~~vd~v~fTGs~~~g~~i~~~aa~~-- 238 (478)
T cd07086 164 VVWKPSETTPLTAIAVTKILAEVLEKNGLPPGVVNLVTGGGD---GGELLVHDPRVPLVSFTGSTEVGRRVGETVARR-- 238 (478)
T ss_pred EEEECCCcchHHHHHHHHHHHHhhhccCCCccceEEEecCch---hHHHHhcCCCCCEEEEECcHHHHHHHHHHHhcc--
Confidence 4455544333222223234444444448763332211 1111 333333223478899999999988887766543
Q ss_pred cccCCCccEEEeecCCcchhhhhhcCCCCHHHHHHHHHhCce
Q 003790 362 QKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGGL 403 (795)
Q Consensus 362 ~~~a~~iPLGIIP~GTGNdfArsllGi~dp~~Aa~~IlkG~~ 403 (795)
..--++=+| ||+-+- +..-.|...|+..|+.+..
T Consensus 239 ------~~~~~lElG-G~~p~i-V~~dAdl~~Aa~~i~~~~~ 272 (478)
T cd07086 239 ------FGRVLLELG-GNNAII-VMDDADLDLAVRAVLFAAV 272 (478)
T ss_pred ------CCcEEeecC-CCCcEE-EcCCCCHHHHHHHHHHHHH
Confidence 122355566 777663 2333578888888887653
No 227
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=26.11 E-value=4.9e+02 Score=26.44 Aligned_cols=65 Identities=12% Similarity=0.177 Sum_probs=39.9
Q ss_pred HhHHHHHHHcCCeEEEEEeCCc-chHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEe
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~-ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGII 373 (795)
+.++..+++.|+.+.+..+... ....+..+++.. ..+|+||+++.+.+ ..++..+... ++|+-.+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~-~~~dgii~~~~~~~-~~~~~~~~~~-------~ipvv~~ 84 (259)
T cd01542 19 KGILAALYENGYQMLLMNTNFSIEKEIEALELLAR-QKVDGIILLATTIT-DEHREAIKKL-------NVPVVVV 84 (259)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh-cCCCEEEEeCCCCC-HHHHHHHhcC-------CCCEEEE
Confidence 5677788889998877765432 222344555543 35899999987654 2455555432 3565555
No 228
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=25.93 E-value=64 Score=29.26 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=19.2
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003790 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
++|.|.+++.++.++|+++|.
T Consensus 71 r~y~l~A~s~~e~~~Wi~al~ 91 (95)
T cd01265 71 EVIALKASSDKQMNYWLQALQ 91 (95)
T ss_pred cEEEEECCCHHHHHHHHHHHH
Confidence 579999999999999999984
No 229
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=25.44 E-value=87 Score=30.27 Aligned_cols=29 Identities=41% Similarity=0.465 Sum_probs=21.8
Q ss_pred eeeeeecceeeeccc--------ccCCcceEEEEecC
Q 003790 160 VNAKLTSKALVWGSH--------VLPLDDIVSVSYNN 188 (795)
Q Consensus 160 ~~~~~~~~~~~~~~~--------~l~l~d~~~~~~~~ 188 (795)
-==||++|+|.-..+ .|+|.||..|....
T Consensus 19 hYWrLDsK~Itlf~~e~~skyyKeIPLsEIl~V~~~~ 55 (117)
T cd01239 19 HYWRLDSKAITLYQEESGSRYYKEIPLAEILSVSSNN 55 (117)
T ss_pred eEEEecCCeEEEEEcCCCCeeeEEeehHHheEEeccC
Confidence 335788888877643 89999999998553
No 230
>cd07103 ALDH_F5_SSADH_GabD Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.
Probab=25.44 E-value=3.3e+02 Score=31.32 Aligned_cols=91 Identities=12% Similarity=0.089 Sum_probs=54.8
Q ss_pred hHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeecCCcch
Q 003790 301 IVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNS 380 (795)
Q Consensus 301 ~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNd 380 (795)
.+..+|+++|+.-.++..-.. ...++.+.+......|.|+..|+-.+-..+......+ -.| .++-+| ||+
T Consensus 162 ~l~~~l~~aglP~g~v~~v~~-~~~~~~~~l~~~~~vd~V~ftGs~~~g~~v~~~aa~~-------~~~-~~lelg-G~~ 231 (451)
T cd07103 162 ALAELAEEAGLPAGVLNVVTG-SPAEIGEALCASPRVRKISFTGSTAVGKLLMAQAADT-------VKR-VSLELG-GNA 231 (451)
T ss_pred HHHHHHHHcCCCcccEEEEec-CchhHHHHHhcCCCCCEEEEECCHHHHHHHHHHHHhc-------CCc-EEEECC-CCC
Confidence 466788888876433322111 1112333333223468999999988888887776543 122 355556 787
Q ss_pred hhhhhcCCCCHHHHHHHHHhCc
Q 003790 381 LVWTVLGVRDPVSAALAIVKGG 402 (795)
Q Consensus 381 fArsllGi~dp~~Aa~~IlkG~ 402 (795)
.+- +..-.|+..|+..|+.|.
T Consensus 232 ~~i-V~~dadl~~aa~~i~~~~ 252 (451)
T cd07103 232 PFI-VFDDADLDKAVDGAIASK 252 (451)
T ss_pred eEE-ECCCCCHHHHHHHHHHHH
Confidence 763 334468888888888765
No 231
>PRK14072 6-phosphofructokinase; Provisional
Probab=25.19 E-value=1.9e+02 Score=33.54 Aligned_cols=58 Identities=22% Similarity=0.176 Sum_probs=37.0
Q ss_pred HHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeecCCcchhhhh
Q 003790 324 AKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (795)
Q Consensus 324 A~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArs 384 (795)
-.++++.+... ..|.+|++|||||+.-+. .|.+.-. +...++++--||.==-||+.-+
T Consensus 92 ~~~~~~~l~~~-~Id~LivIGGdgS~~~a~-~L~e~~~-~~g~~i~vIgIPkTIDNDl~gt 149 (416)
T PRK14072 92 YERLLEVFKAH-DIGYFFYNGGNDSMDTAL-KVSQLAK-KMGYPIRCIGIPKTIDNDLPGT 149 (416)
T ss_pred HHHHHHHHHHc-CCCEEEEECChHHHHHHH-HHHHHHH-HhCCCceEEEeeecccCCCCCC
Confidence 34444555432 479999999999997653 3332100 0112588999998778999854
No 232
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=25.18 E-value=75 Score=26.55 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=19.9
Q ss_pred EeEEEEecCCHHHHHHHHHhhh
Q 003790 217 RKDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 217 ~~~~~f~~~~~~~a~~W~~~~~ 238 (795)
.+.+.|.+++.++++.|.++|.
T Consensus 76 ~~~~~~~~~~~~~~~~W~~al~ 97 (99)
T cd00900 76 RRVFVFQADSEEEAQEWVEALQ 97 (99)
T ss_pred cEEEEEEcCCHHHHHHHHHHHh
Confidence 5789999999999999999984
No 233
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=24.99 E-value=2.1e+02 Score=33.21 Aligned_cols=57 Identities=21% Similarity=0.217 Sum_probs=37.2
Q ss_pred HHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeecCCcchhhhh
Q 003790 325 KNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (795)
Q Consensus 325 ~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArs 384 (795)
..+++.+... ..|.+|++|||||+.-+. .|.+.-. +...++++--||.==-||+.-+
T Consensus 102 ~~~~~~L~~~-~Id~Li~IGGdgS~~~a~-~L~~~~~-~~g~~i~vvgIPkTIDNDl~~t 158 (403)
T PRK06555 102 KVAAERLAAD-GVDILHTIGGDDTNTTAA-DLAAYLA-ENGYDLTVVGLPKTIDNDVVPI 158 (403)
T ss_pred HHHHHHHHHc-CCCEEEEECChhHHHHHH-HHHHHHH-HhCCCceEEEeeeeeeCCCCCc
Confidence 4455555433 479999999999997663 3332000 0123589999999888998743
No 234
>cd07130 ALDH_F7_AASADH NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B. Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer.
Probab=24.87 E-value=2.9e+02 Score=32.26 Aligned_cols=106 Identities=15% Similarity=0.167 Sum_probs=64.6
Q ss_pred EEEEcCCCCCCCchhhHHHhHHHHHHHcCCe---EEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHc
Q 003790 282 LVILNPRSGRGRSSKVFHDIVEPIFKLAGFK---LEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLS 358 (795)
Q Consensus 282 lVIvNP~SG~Gka~ki~~~~I~plL~~aGi~---~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~ 358 (795)
.||+-|..-.-.....+.+.+..+|.++|+. +.++ +... +....+......|.|..-|+-.|-..|......
T Consensus 162 ~VvlKps~~~p~~~~~l~~l~~~~~~~aglP~gv~~~v-~g~~----~~~~~L~~~~~vd~V~fTGs~~~g~~i~~~aa~ 236 (474)
T cd07130 162 VVVWKPSPTTPLTAIAVTKIVARVLEKNGLPGAIASLV-CGGA----DVGEALVKDPRVPLVSFTGSTAVGRQVGQAVAA 236 (474)
T ss_pred eEEeeCCccCHHHHHHHHHHHHHHHHhcCCCCCcEEEE-eCCh----hHHHHHhcCCCCCEEEEECchHHHHHHHHHHHh
Confidence 4566666654444334445566778888876 3333 2221 123444333457899999999999999887665
Q ss_pred CCCcccCCCccEEEeecCCcchhhhhhcCCCCHHHHHHHHHhCc
Q 003790 359 RGNQKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGG 402 (795)
Q Consensus 359 r~d~~~a~~iPLGIIP~GTGNdfArsllGi~dp~~Aa~~IlkG~ 402 (795)
+- .++ ++=+| ||+-+- ++.-.|...|+..|+.|.
T Consensus 237 ~~-------~~~-~lElG-Gk~p~i-V~~dadl~~Aa~~i~~~~ 270 (474)
T cd07130 237 RF-------GRS-LLELG-GNNAII-VMEDADLDLAVRAVLFAA 270 (474)
T ss_pred cC-------CCE-EEEcC-CCCeEE-ECCCCCHHHHHHHHHHHH
Confidence 41 122 35577 777663 233357888888888765
No 235
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=24.81 E-value=46 Score=36.71 Aligned_cols=33 Identities=21% Similarity=0.093 Sum_probs=25.3
Q ss_pred eeeeec-cCCCCCCcccCCCCCcCCCCCCCCCCCCCCCcccCCC
Q 003790 495 YTDIMR-KSKNEGMPRASSLSSIDSIMTPSRMSGGDPDTTCSST 537 (795)
Q Consensus 495 ~v~V~N-r~~GgG~~iaP~A~~~d~~~t~~~~~DG~Ldvv~~~~ 537 (795)
+..++| .++||++.++|++++ +||.||+.+...
T Consensus 194 ~~~~~~~~~~gg~~~~~p~a~~----------~dG~l~~~i~~~ 227 (301)
T COG1597 194 ALLVFNGNSYGGGMKLAPDASL----------DDGLLDVYILKP 227 (301)
T ss_pred EEEEecCcccccccccCCcCCC----------CCceEEEEEEcc
Confidence 344455 899999999999984 789999776433
No 236
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=24.67 E-value=1.1e+02 Score=31.45 Aligned_cols=46 Identities=20% Similarity=0.405 Sum_probs=31.9
Q ss_pred chHHHHHHHhhhcCCCCCeEEE-cC-chHHHHHHHHHHcCCCcccCCCccEEEeecC
Q 003790 322 GHAKNLASTVDISSCPDGIICV-GG-DGIINEVLNGLLSRGNQKEGISIPIGIIPAG 376 (795)
Q Consensus 322 ghA~ela~~l~~~~~~D~IVvv-GG-DGTlnEVvNGL~~r~d~~~a~~iPLGIIP~G 376 (795)
..|.++.+.+... +..+|. || .|..-.+..+..... ...+||+|..
T Consensus 19 ~~A~~lG~~la~~---g~~lV~GGg~~GlM~a~a~ga~~~g------G~viGi~p~~ 66 (178)
T TIGR00730 19 ELAAELGAYLAGQ---GWGLVYGGGRVGLMGAIADAAMENG------GTAVGVNPSG 66 (178)
T ss_pred HHHHHHHHHHHHC---CCEEEECCChHhHHHHHHHHHHhcC------CeEEEecchh
Confidence 3566777777542 444444 55 799999999987653 4679999965
No 237
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=24.60 E-value=1.8e+02 Score=31.04 Aligned_cols=68 Identities=16% Similarity=0.242 Sum_probs=43.7
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHH
Q 003790 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEV 352 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEV 352 (795)
.+++.+| |.|+.-...+.|.++.+..|+..|+.+.-.. -...+..++.+.+.. .|.|+ |||=-|++-.
T Consensus 32 ~~~i~FI--PtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~-l~~~~~~~Ie~~l~~---~d~Iy-VgGGNTF~LL 99 (224)
T COG3340 32 RKTIAFI--PTASVDSEDDFYVEKVRNALAKLGLEVSELH-LSKPPLAAIENKLMK---ADIIY-VGGGNTFNLL 99 (224)
T ss_pred CceEEEE--ecCccccchHHHHHHHHHHHHHcCCeeeeee-ccCCCHHHHHHhhhh---ccEEE-ECCchHHHHH
Confidence 4556555 9999888777788899999999998764322 223344556555532 35554 5555676643
No 238
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=24.58 E-value=3.2e+02 Score=26.53 Aligned_cols=71 Identities=8% Similarity=0.021 Sum_probs=45.9
Q ss_pred EEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHc
Q 003790 282 LVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLS 358 (795)
Q Consensus 282 lVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~ 358 (795)
.++-|+.. .+.. +-.+.+..+|+.+|+++ +.+.......++++.+... .+|.|++++=|||--+.+..++.
T Consensus 5 v~~a~~g~-D~Hd--~g~~iv~~~l~~~GfeV--i~lg~~~s~e~~v~aa~e~-~adii~iSsl~~~~~~~~~~~~~ 75 (132)
T TIGR00640 5 ILVAKMGQ-DGHD--RGAKVIATAYADLGFDV--DVGPLFQTPEEIARQAVEA-DVHVVGVSSLAGGHLTLVPALRK 75 (132)
T ss_pred EEEEeeCC-CccH--HHHHHHHHHHHhCCcEE--EECCCCCCHHHHHHHHHHc-CCCEEEEcCchhhhHHHHHHHHH
Confidence 34556555 3332 22357888999999765 4444444456677766544 47999999999876666666554
No 239
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=24.25 E-value=74 Score=26.33 Aligned_cols=21 Identities=24% Similarity=0.597 Sum_probs=19.3
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003790 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
+.+.|.++|.+++.+|.++|+
T Consensus 74 ~~~~~~~~s~~~~~~W~~~l~ 94 (96)
T cd00821 74 RSYLLQAESEEEREEWIEALQ 94 (96)
T ss_pred cEEEEEeCCHHHHHHHHHHHh
Confidence 689999999999999999984
No 240
>PLN02335 anthranilate synthase
Probab=24.09 E-value=2.5e+02 Score=29.56 Aligned_cols=63 Identities=22% Similarity=0.281 Sum_probs=41.6
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHH
Q 003790 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEV 352 (795)
Q Consensus 276 ~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEV 352 (795)
+..++++||=|--+ |...|...|++.|++++++..+.. .+.++. . ..+|+||+.||-|..++.
T Consensus 16 ~~~~~ilviD~~ds--------ft~~i~~~L~~~g~~~~v~~~~~~-~~~~~~----~-~~~d~iVisgGPg~p~d~ 78 (222)
T PLN02335 16 KQNGPIIVIDNYDS--------FTYNLCQYMGELGCHFEVYRNDEL-TVEELK----R-KNPRGVLISPGPGTPQDS 78 (222)
T ss_pred CccCcEEEEECCCC--------HHHHHHHHHHHCCCcEEEEECCCC-CHHHHH----h-cCCCEEEEcCCCCChhhc
Confidence 45578888866222 223577789999999988865322 222332 1 137999999999998764
No 241
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=24.06 E-value=5.7e+02 Score=27.57 Aligned_cols=88 Identities=14% Similarity=0.133 Sum_probs=49.0
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcch-HHHHHHHhhhcCCCCCeEEEcCchHHHHHHHH
Q 003790 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGH-AKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~gh-A~ela~~l~~~~~~D~IVvvGGDGTlnEVvNG 355 (795)
+.+.+.||+ |.....--..++ +.++..+++.|+.+.+..+....+ -.++.+.+.. ..+|+||+.+++-.- +.+..
T Consensus 58 ~~~~i~vi~-~~~~~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~~~~-~~~~~ 133 (341)
T PRK10703 58 HTKSIGLLA-TSSEAPYFAEII-EAVEKNCYQKGYTLILCNAWNNLEKQRAYLSMLAQ-KRVDGLLVMCSEYPE-PLLAM 133 (341)
T ss_pred CCCeEEEEe-CCCCCchHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH-cCCCEEEEecCCCCH-HHHHH
Confidence 334555555 554433223333 467778888898877766543221 2234444433 357999998876432 45555
Q ss_pred HHcCCCcccCCCccEEEee
Q 003790 356 LLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 356 L~~r~d~~~a~~iPLGIIP 374 (795)
|... .++|+-.+-
T Consensus 134 l~~~------~~iPvV~~d 146 (341)
T PRK10703 134 LEEY------RHIPMVVMD 146 (341)
T ss_pred HHhc------CCCCEEEEe
Confidence 5431 146776663
No 242
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=24.02 E-value=4.4e+02 Score=27.55 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=30.4
Q ss_pred hHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHH
Q 003790 301 IVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINE 351 (795)
Q Consensus 301 ~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnE 351 (795)
.+...|++.|+.+.++...... ..+. .++ .. .+|+||+.||.|...+
T Consensus 15 ~~~~~l~~~G~~~~~~~~~~~~-~~~~-~~~-~~-~~dgliisGGp~~~~~ 61 (214)
T PRK07765 15 NLVQYLGQLGVEAEVWRNDDPR-LADE-AAV-AA-QFDGVLLSPGPGTPER 61 (214)
T ss_pred HHHHHHHHcCCcEEEEECCCcC-HHHH-HHh-hc-CCCEEEECCCCCChhh
Confidence 4556788889998887655321 2222 222 12 3799999999987653
No 243
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=23.94 E-value=4.6e+02 Score=26.73 Aligned_cols=77 Identities=16% Similarity=0.180 Sum_probs=47.5
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe--CCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHH
Q 003790 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT--TSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T--~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNG 355 (795)
.+++.+|..... .+ .... ..++..++++|+++..... ....+...+++++... .+|+|++++.+.....+++.
T Consensus 136 ~~~v~iv~~~~~-~~--~~~~-~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~-~~~~v~~~~~~~~~~~~~~~ 210 (299)
T cd04509 136 WKKVAILYDDDS-YG--RGLL-EAFKAAFKKKGGTVVGEEYYPLGTTDFTSLLQKLKAA-KPDVIVLCGSGEDAATILKQ 210 (299)
T ss_pred CcEEEEEecCch-HH--HHHH-HHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHhc-CCCEEEEcccchHHHHHHHH
Confidence 467887776544 22 2222 4677788888877643322 2223455666666433 36777777766888888888
Q ss_pred HHcC
Q 003790 356 LLSR 359 (795)
Q Consensus 356 L~~r 359 (795)
+...
T Consensus 211 ~~~~ 214 (299)
T cd04509 211 AAEA 214 (299)
T ss_pred HHHc
Confidence 8765
No 244
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=23.93 E-value=4.1e+02 Score=28.52 Aligned_cols=65 Identities=14% Similarity=0.126 Sum_probs=41.5
Q ss_pred HhHHHHHHHcCCeEEEEEeCCcchH--HHHHHHhhhcCCCCCeEEEcCchH-HHHHHHHHHcCCCcccCCCccEEEe
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSAGHA--KNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~ghA--~ela~~l~~~~~~D~IVvvGGDGT-lnEVvNGL~~r~d~~~a~~iPLGII 373 (795)
+.++..+++.|+.+.+..+.. +.+ .++.+.+.. ..+|+||+++-|.. +..++..+... ++|+-++
T Consensus 18 ~~i~~~a~~~g~~v~~~~~~~-~~~~q~~~i~~l~~-~~vDgIIi~~~~~~~~~~~l~~~~~~-------~iPvV~~ 85 (302)
T TIGR02634 18 DIFVAAAESLGAKVFVQSANG-NEAKQISQIENLIA-RGVDVLVIIPQNGQVLSNAVQEAKDE-------GIKVVAY 85 (302)
T ss_pred HHHHHHHHhcCCEEEEEeCCC-CHHHHHHHHHHHHH-cCCCEEEEeCCChhHHHHHHHHHHHC-------CCeEEEe
Confidence 567778888888776654432 222 234444433 35899999998865 46677776554 4777666
No 245
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=23.92 E-value=54 Score=40.12 Aligned_cols=65 Identities=22% Similarity=0.348 Sum_probs=46.8
Q ss_pred eeeeeecceeeeccc-------ccCCcceEEEEecCC-----cceEEEEEeecCCCCCccccccCCeeeEeEEEEecCCH
Q 003790 160 VNAKLTSKALVWGSH-------VLPLDDIVSVSYNNG-----LRHFTVHSYPLKKGSYGLSCFIKPRRVRKDYRFLASTT 227 (795)
Q Consensus 160 ~~~~~~~~~~~~~~~-------~l~l~d~~~~~~~~~-----~~~~~i~~y~~~k~~~g~~~~~~~~r~~~~~~f~~~~~ 227 (795)
--.+||+.+|.|-+. .|+|++|-+|.--+. ..-|+|- | .. +++-|.+.|.
T Consensus 589 ryf~LT~~~Ls~~Ksp~~q~~~~Ipl~nI~avEklee~sF~~knv~qVV-~--------------~d---rtly~Q~~n~ 650 (800)
T KOG2059|consen 589 RYFRLTTEELSYAKSPGKQPIYTIPLSNIRAVEKLEEKSFKMKNVFQVV-H--------------TD---RTLYVQAKNC 650 (800)
T ss_pred eEEEeccceeEEecCCccCcccceeHHHHHHHHHhhhhccCCCceEEEE-e--------------cC---cceeEecCCc
Confidence 457999999999865 799999999873221 1223332 1 11 3788999999
Q ss_pred HHHHHHHHhhhcccc
Q 003790 228 EEAIQWVGGFADQQC 242 (795)
Q Consensus 228 ~~a~~W~~~~~~~~~ 242 (795)
.|+.+|.+++....|
T Consensus 651 vEandWldaL~kvs~ 665 (800)
T KOG2059|consen 651 VEANDWLDALRKVSC 665 (800)
T ss_pred hHHHHHHHHHHHHhc
Confidence 999999999965444
No 246
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=23.91 E-value=4e+02 Score=28.32 Aligned_cols=56 Identities=16% Similarity=0.013 Sum_probs=33.9
Q ss_pred HhHHHHHHHcCCeEEEEEeCC---cchHHHHHHHhhhcCCCCCeEEEcCchHH-HHHHHHH
Q 003790 300 DIVEPIFKLAGFKLEVVKTTS---AGHAKNLASTVDISSCPDGIICVGGDGII-NEVLNGL 356 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~---~ghA~ela~~l~~~~~~D~IVvvGGDGTl-nEVvNGL 356 (795)
..++..+++.|+.+.+..+.. .....++.+.+.. ..+|+||+++.|... .+.+..+
T Consensus 19 ~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~-~~vDgiIi~~~~~~~~~~~l~~~ 78 (295)
T TIGR02955 19 YGMVEQAKHLGVELKVLEAGGYPNLDKQLAQIEQCKS-WGADAILLGTVSPEALNHDLAQL 78 (295)
T ss_pred HHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHH-cCCCEEEEecCChhhhhHHHHHH
Confidence 456677888898887766542 2223344555433 458999998876432 3455443
No 247
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.61 E-value=4.1e+02 Score=27.48 Aligned_cols=69 Identities=7% Similarity=0.034 Sum_probs=39.6
Q ss_pred HhHHHHHHHc-----CCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCchH-HHHHHHHHHcCCCcccCCCccEEE
Q 003790 300 DIVEPIFKLA-----GFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGI 372 (795)
Q Consensus 300 ~~I~plL~~a-----Gi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDGT-lnEVvNGL~~r~d~~~a~~iPLGI 372 (795)
+.++..+++. |+.+.+..+.... ...++.+.+.. ..+|+||+++.|.. +.+.++.+... .+|+-.
T Consensus 19 ~gi~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vDgiii~~~~~~~~~~~i~~~~~~-------gIpvV~ 90 (274)
T cd06311 19 WHAQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQDLLIN-RKIDALVILPFESAPLTQPVAKAKKA-------GIFVVV 90 (274)
T ss_pred HHHHHHHHHhhhhCCCeEEEEEcCCCCHHHHHHHHHHHHH-cCCCEEEEeCCCchhhHHHHHHHHHC-------CCeEEE
Confidence 4566666665 4555444433221 12233444432 34799999998864 56777766543 578777
Q ss_pred eecC
Q 003790 373 IPAG 376 (795)
Q Consensus 373 IP~G 376 (795)
+-.+
T Consensus 91 ~d~~ 94 (274)
T cd06311 91 VDRG 94 (274)
T ss_pred EcCC
Confidence 7554
No 248
>PRK05637 anthranilate synthase component II; Provisional
Probab=23.57 E-value=2.9e+02 Score=28.89 Aligned_cols=59 Identities=24% Similarity=0.332 Sum_probs=38.5
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEV 352 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEV 352 (795)
+|++||=| +.+ |...+...|+..|..++++..+.. ..++. . ..+|+||+.||-|.+.+.
T Consensus 2 ~~il~iD~---~ds-----f~~nl~~~l~~~g~~~~v~~~~~~--~~~l~----~-~~~~~iIlsgGPg~~~d~ 60 (208)
T PRK05637 2 THVVLIDN---HDS-----FVYNLVDAFAVAGYKCTVFRNTVP--VEEIL----A-ANPDLICLSPGPGHPRDA 60 (208)
T ss_pred CEEEEEEC---CcC-----HHHHHHHHHHHCCCcEEEEeCCCC--HHHHH----h-cCCCEEEEeCCCCCHHHh
Confidence 56666666 211 112466789999988887765422 23332 1 147999999999999876
No 249
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=23.55 E-value=5e+02 Score=28.79 Aligned_cols=66 Identities=15% Similarity=0.223 Sum_probs=43.6
Q ss_pred CCCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEc
Q 003790 276 KSPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVG 344 (795)
Q Consensus 276 ~r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvG 344 (795)
++.+-+.+|+...+. --...+. .-++..+++.|+.+.+..+.+.. .-.++.+.+. ...+|+||+.|
T Consensus 56 ~~s~~Ig~i~p~~~~-~~~~~i~-~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~-~~~vdGiIi~~ 122 (333)
T COG1609 56 GRTKTIGLVVPDITN-PFFAEIL-KGIEEAAREAGYSLLLANTDDDPEKEREYLETLL-QKRVDGLILLG 122 (333)
T ss_pred CCCCEEEEEeCCCCC-chHHHHH-HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHH-HcCCCEEEEec
Confidence 456678888774444 2222334 57888999999999888888733 3333444443 34589999999
No 250
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=23.18 E-value=2.4e+02 Score=36.10 Aligned_cols=87 Identities=16% Similarity=0.279 Sum_probs=54.8
Q ss_pred HHHHHcCCeEEEEEeCCcchHHHHHHHhhhc-------------------------------------------CCCCCe
Q 003790 304 PIFKLAGFKLEVVKTTSAGHAKNLASTVDIS-------------------------------------------SCPDGI 340 (795)
Q Consensus 304 plL~~aGi~~~v~~T~~~ghA~ela~~l~~~-------------------------------------------~~~D~I 340 (795)
..|+++|+++.++.-++..-|..+|+++... +....+
T Consensus 560 ~~l~~aGI~v~miTGD~~~tA~aIA~~lGI~~~~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe~K~~iV~~Lq~~G~v 639 (903)
T PRK15122 560 AALRENGVAVKVLTGDNPIVTAKICREVGLEPGEPLLGTEIEAMDDAALAREVEERTVFAKLTPLQKSRVLKALQANGHT 639 (903)
T ss_pred HHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCccchHhhhhCCHHHHHHHhhhCCEEEEeCHHHHHHHHHHHHhCCCE
Confidence 3678889988777667777778888776432 011348
Q ss_pred EEEcCchHHHHHHHHHHcCCCcccCCCccEEEeecCCcchhhhhhcCC----CCHHHHHHHHHhCc
Q 003790 341 ICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWTVLGV----RDPVSAALAIVKGG 402 (795)
Q Consensus 341 VvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArsllGi----~dp~~Aa~~IlkG~ 402 (795)
|++=||| +|.+- +|..- -+|| -+|+|.+.|+....+ .+......++..|+
T Consensus 640 VamtGDG-vNDaP-ALk~A---------DVGI-Amg~gtdvAkeaADiVLldd~f~~Iv~ai~~gR 693 (903)
T PRK15122 640 VGFLGDG-INDAP-ALRDA---------DVGI-SVDSGADIAKESADIILLEKSLMVLEEGVIKGR 693 (903)
T ss_pred EEEECCC-chhHH-HHHhC---------CEEE-EeCcccHHHHHhcCEEEecCChHHHHHHHHHHH
Confidence 8888999 67653 34322 3563 467899999875443 34444455555554
No 251
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=23.16 E-value=3.6e+02 Score=27.63 Aligned_cols=84 Identities=15% Similarity=0.141 Sum_probs=52.2
Q ss_pred EEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchH--HHHHHHhhhcCCCCCeEEEcCch-HHHHHHHHHHcCC
Q 003790 284 ILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHA--KNLASTVDISSCPDGIICVGGDG-IINEVLNGLLSRG 360 (795)
Q Consensus 284 IvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA--~ela~~l~~~~~~D~IVvvGGDG-TlnEVvNGL~~r~ 360 (795)
|+.|..+.. -...+.+-++..+++.|+++.+......+.. .+.++++.. +.+|+||+..-|. .+.++++.+...
T Consensus 3 vi~~~~~~~-~~~~~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~-~~~d~Iiv~~~~~~~~~~~l~~~~~~- 79 (257)
T PF13407_consen 3 VIVPSMDNP-FWQQVIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAIS-QGVDGIIVSPVDPDSLAPFLEKAKAA- 79 (257)
T ss_dssp EEESSSSSH-HHHHHHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHH-TTESEEEEESSSTTTTHHHHHHHHHT-
T ss_pred EEeCCCCCH-HHHHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHH-hcCCEEEecCCCHHHHHHHHHHHhhc-
Confidence 455555544 3333445677888889999888622222222 223344433 4589999998887 467888887765
Q ss_pred CcccCCCccEEEeecC
Q 003790 361 NQKEGISIPIGIIPAG 376 (795)
Q Consensus 361 d~~~a~~iPLGIIP~G 376 (795)
++|+-.+=.+
T Consensus 80 ------gIpvv~~d~~ 89 (257)
T PF13407_consen 80 ------GIPVVTVDSD 89 (257)
T ss_dssp ------TSEEEEESST
T ss_pred ------CceEEEEecc
Confidence 5788776444
No 252
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=22.99 E-value=2.2e+02 Score=28.57 Aligned_cols=46 Identities=17% Similarity=0.199 Sum_probs=31.1
Q ss_pred HhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHH
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINE 351 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnE 351 (795)
..+...|++.|++++++.-..... ++ ..+ . .+|+||+.||.|+..+
T Consensus 12 ~~~~~~l~~~G~~~~~~~~~~~~~--~~-~~~--~-~~dgvil~gG~~~~~~ 57 (184)
T cd01743 12 YNLVQYLRELGAEVVVVRNDEITL--EE-LEL--L-NPDAIVISPGPGHPED 57 (184)
T ss_pred HHHHHHHHHcCCceEEEeCCCCCH--HH-Hhh--c-CCCEEEECCCCCCccc
Confidence 456678899999888776643322 11 122 2 3799999999998654
No 253
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=22.69 E-value=1.4e+02 Score=31.48 Aligned_cols=45 Identities=24% Similarity=0.213 Sum_probs=27.1
Q ss_pred CCCCeEEEcCchHH---------------HHHHHHHHcCCCcccCCCccEEEeecCCcchhhhh
Q 003790 336 CPDGIICVGGDGII---------------NEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (795)
Q Consensus 336 ~~D~IVvvGGDGTl---------------nEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArs 384 (795)
.||+|++.||.|.. ++.+..++..-. ..+.+++-|=.|.. .|++.
T Consensus 82 dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~---~~gK~VaAIChgp~-~L~~~ 141 (213)
T cd03133 82 DFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFH---QAGKPIGAICIAPA-LAAKI 141 (213)
T ss_pred HCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHH---HCCCeEEEECHHHH-HHHHH
Confidence 38999999998752 333444433211 12468888877773 45553
No 254
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=22.61 E-value=5.8e+02 Score=27.43 Aligned_cols=86 Identities=14% Similarity=0.145 Sum_probs=47.3
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcch-HHHHHHHhhhcCCCCCeEEEcCchHHHHHHHH
Q 003790 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGH-AKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~gh-A~ela~~l~~~~~~D~IVvvGGDGTlnEVvNG 355 (795)
+.+.+.|++.-.... --..++ ..++..+++.|+.+.+..+....+ ..+..+.+. ...+|+||+++-+.. .+.+..
T Consensus 62 ~~~~Igvi~~~~~~~-~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~vdgiI~~~~~~~-~~~~~~ 137 (331)
T PRK14987 62 TSRAIGVLLPSLTNQ-VFAEVL-RGIESVTDAHGYQTMLAHYGYKPEMEQERLESML-SWNIDGLILTERTHT-PRTLKM 137 (331)
T ss_pred CCCEEEEEeCCCcch-hHHHHH-HHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHH-hcCCCEEEEcCCCCC-HHHHHH
Confidence 455677777432221 112333 467778888898876655543222 223344443 235899999875433 355555
Q ss_pred HHcCCCcccCCCccEEEe
Q 003790 356 LLSRGNQKEGISIPIGII 373 (795)
Q Consensus 356 L~~r~d~~~a~~iPLGII 373 (795)
|... ++|+-.+
T Consensus 138 l~~~-------~iPvV~~ 148 (331)
T PRK14987 138 IEVA-------GIPVVEL 148 (331)
T ss_pred HHhC-------CCCEEEE
Confidence 5433 4777654
No 255
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.60 E-value=4.1e+02 Score=27.26 Aligned_cols=66 Identities=14% Similarity=0.063 Sum_probs=41.6
Q ss_pred HhHHHHHHHcCCeEEEEEeCCc-chHHHHHHHhhhcCCCCCeEEEcCchH-HHHHHHHHHcCCCcccCCCccEEEe
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~-ghA~ela~~l~~~~~~D~IVvvGGDGT-lnEVvNGL~~r~d~~~a~~iPLGII 373 (795)
+.++..+++.|+++.+..+... ....+..+.+.. ..+|+||+.+-|.. +.+.++.+... ++|+-.+
T Consensus 19 ~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~-~~vdgiii~~~~~~~~~~~~~~~~~~-------~ipvV~~ 86 (267)
T cd06322 19 NAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFIT-KKVDAIVLSPVDSKGIRAAIAKAKKA-------GIPVITV 86 (267)
T ss_pred HHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHH-cCCCEEEEcCCChhhhHHHHHHHHHC-------CCCEEEE
Confidence 5677788888988876655432 223445555543 35899999887654 35566665443 4676665
No 256
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=22.36 E-value=86 Score=26.87 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=19.6
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003790 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
+.+.|.++|.++..+|.++|.
T Consensus 80 ~~~~~~~~s~~~~~~W~~~i~ 100 (104)
T PF00169_consen 80 KSYLFSAESEEERKRWIQAIQ 100 (104)
T ss_dssp EEEEEEESSHHHHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHH
Confidence 789999999999999999984
No 257
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=22.35 E-value=6.9e+02 Score=26.71 Aligned_cols=67 Identities=18% Similarity=0.231 Sum_probs=36.8
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCc
Q 003790 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGD 346 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGD 346 (795)
+.+.+.|++ |.-...-...++ ..++..+++.|+.+.+..+.... ...++.+.+.. ..+|+||+++.+
T Consensus 58 ~~~~Igvv~-~~~~~~f~~~l~-~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~l~~-~~vdGiIi~~~~ 125 (329)
T TIGR01481 58 RTTTVGVII-PDISNIYYAELA-RGIEDIATMYKYNIILSNSDEDPEKEVQVLNTLLS-KQVDGIIFMGGT 125 (329)
T ss_pred CCCEEEEEe-CCCCchhHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHh-CCCCEEEEeCCC
Confidence 445666666 432222222333 45667788888887666544322 22334444432 357999998754
No 258
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=22.34 E-value=3.9e+02 Score=28.66 Aligned_cols=86 Identities=20% Similarity=0.212 Sum_probs=56.2
Q ss_pred eEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcC
Q 003790 280 KMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSR 359 (795)
Q Consensus 280 rllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r 359 (795)
.+.||+...+..- ..++. ..|+..+++.|+.+-+..|.+..+..+..+.+.. ...|+||+++-... .+-+..+...
T Consensus 3 ~IGvivp~~~npf-f~~ii-~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~-~~vDGiI~~s~~~~-~~~l~~~~~~ 78 (279)
T PF00532_consen 3 TIGVIVPDISNPF-FAEII-RGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQ-RRVDGIILASSEND-DEELRRLIKS 78 (279)
T ss_dssp EEEEEESSSTSHH-HHHHH-HHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHH-TTSSEEEEESSSCT-CHHHHHHHHT
T ss_pred EEEEEECCCCCcH-HHHHH-HHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHh-cCCCEEEEecccCC-hHHHHHHHHc
Confidence 4566665443322 22344 4678889999999988888877766666666643 45899999977766 5666666654
Q ss_pred CCcccCCCccEEEeecC
Q 003790 360 GNQKEGISIPIGIIPAG 376 (795)
Q Consensus 360 ~d~~~a~~iPLGIIP~G 376 (795)
++|+-++=.-
T Consensus 79 -------~iPvV~~~~~ 88 (279)
T PF00532_consen 79 -------GIPVVLIDRY 88 (279)
T ss_dssp -------TSEEEEESS-
T ss_pred -------CCCEEEEEec
Confidence 4676555443
No 259
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=22.14 E-value=3.5e+02 Score=25.45 Aligned_cols=97 Identities=19% Similarity=0.178 Sum_probs=53.8
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchH--HHHHH--HhhhcCCCCCeEEEcCchHHHHHH
Q 003790 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHA--KNLAS--TVDISSCPDGIICVGGDGIINEVL 353 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA--~ela~--~l~~~~~~D~IVvvGGDGTlnEVv 353 (795)
-+++.+|. +..+.......+ +-++..++++|+++........... ..... .++.. .+|+|+ |+.|.+...++
T Consensus 9 ~r~i~~i~-~~~~~~~~~~r~-~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~pdaii-~~~~~~a~~~~ 84 (160)
T PF13377_consen 9 HRRIAFIG-GPPNSSVSRERL-EGFREALKEHGIEFEELIFFSDDDSEDAREAQLLWLRRL-RPDAII-CSNDRLALGVL 84 (160)
T ss_dssp -SSEEEEE-SSTTSHHHHHHH-HHHHHHHHHTTSEEEGEEEEESSSHHHHHHHHHHHHHTC-SSSEEE-ESSHHHHHHHH
T ss_pred CCeEEEEe-cCCCChhHHHHH-HHHHHHHHHCCCCCCeeEeecCCcchhHHHHHHHHHhcC-CCcEEE-EcCHHHHHHHH
Confidence 46777777 333333333333 3566788999998765544333221 11111 12211 356555 59999999999
Q ss_pred HHHHcCCCcccCCCccEEEeecCCcchh
Q 003790 354 NGLLSRGNQKEGISIPIGIIPAGSDNSL 381 (795)
Q Consensus 354 NGL~~r~d~~~a~~iPLGIIP~GTGNdf 381 (795)
.+|.+..-. ..--++|+-.+.-..+
T Consensus 85 ~~l~~~g~~---vP~di~vv~~~~~~~~ 109 (160)
T PF13377_consen 85 RALRELGIR---VPQDISVVSFDDSPLL 109 (160)
T ss_dssp HHHHHTTSC---TTTTSEEEEESSSGHH
T ss_pred HHHHHcCCc---ccccccEEEecCcHHH
Confidence 999876321 1123677777754444
No 260
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=22.01 E-value=1.5e+02 Score=30.02 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=32.6
Q ss_pred HhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHH
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEV 352 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEV 352 (795)
..+...|++.|.+++++.... ....++ +++ .+|+||+.||.|..++.
T Consensus 13 ~nl~~~l~~~~~~~~v~~~~~-~~~~~~-~~~----~~~~iilsgGP~~~~~~ 59 (191)
T PRK06774 13 YNLYQYFCELGTEVMVKRNDE-LQLTDI-EQL----APSHLVISPGPCTPNEA 59 (191)
T ss_pred HHHHHHHHHCCCcEEEEeCCC-CCHHHH-Hhc----CCCeEEEcCCCCChHhC
Confidence 346678888999888776542 233333 221 37999999999998764
No 261
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.00 E-value=5.6e+02 Score=26.76 Aligned_cols=63 Identities=22% Similarity=0.304 Sum_probs=40.8
Q ss_pred HhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEee
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIP 374 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP 374 (795)
..++..+++.|+.+.++.+.. + .+..+.+.. ..+|+||+.+-+.+- ++++.+... ++|+-.+-
T Consensus 24 ~gi~~~a~~~g~~~~~~~~~~--~-~~~~~~~~~-~~~dgiii~~~~~~~-~~~~~~~~~-------~ipvV~~~ 86 (283)
T cd06279 24 AGVAEVLDAAGVNLLLLPASS--E-DSDSALVVS-ALVDGFIVYGVPRDD-PLVAALLRR-------GLPVVVVD 86 (283)
T ss_pred HHHHHHHHHCCCEEEEecCcc--H-HHHHHHHHh-cCCCEEEEeCCCCCh-HHHHHHHHc-------CCCEEEEe
Confidence 567788999999988877654 2 233333332 357999999877653 456655433 46776663
No 262
>PRK09267 flavodoxin FldA; Validated
Probab=21.96 E-value=2.6e+02 Score=27.63 Aligned_cols=85 Identities=14% Similarity=0.172 Sum_probs=41.6
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEc---CchHHHHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVG---GDGIINEVLNG 355 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvG---GDGTlnEVvNG 355 (795)
++++|||- |..|...++. +.|...|..+ .++++...... ..++ . .+|.||++. ++|-+...+..
T Consensus 2 mki~IiY~--S~tGnT~~vA-~~Ia~~l~~~--~~~~~~~~~~~-----~~~l--~-~~d~vi~g~pt~~~G~~~~~~~~ 68 (169)
T PRK09267 2 AKIGIFFG--SDTGNTEDIA-KMIQKKLGKD--VADVVDIAKAS-----KEDF--E-AYDLLILGIPTWGYGELQCDWDD 68 (169)
T ss_pred CeEEEEEE--CCCChHHHHH-HHHHHHhCCC--ceEEEEhhhCC-----HhhH--h-hCCEEEEEecCcCCCCCCHHHHH
Confidence 57999994 4455555555 4566666532 44454433221 1122 2 368766652 45654433333
Q ss_pred HHcCCCcccCCCccEEEeecC
Q 003790 356 LLSRGNQKEGISIPIGIIPAG 376 (795)
Q Consensus 356 L~~r~d~~~a~~iPLGIIP~G 376 (795)
++..-........+++++-+|
T Consensus 69 fl~~~~~~~l~~k~vaifg~g 89 (169)
T PRK09267 69 FLPELEEIDFSGKKVALFGLG 89 (169)
T ss_pred HHHHHhcCCCCCCEEEEEecC
Confidence 322100011225688888554
No 263
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=21.89 E-value=77 Score=29.33 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=19.3
Q ss_pred eEEEEecCCHHHHHHHHHhhh
Q 003790 218 KDYRFLASTTEEAIQWVGGFA 238 (795)
Q Consensus 218 ~~~~f~~~~~~~a~~W~~~~~ 238 (795)
++|.|.++|.++.+.|+.+|.
T Consensus 85 r~y~l~A~s~ee~~~Wi~~I~ 105 (108)
T cd01266 85 RDLYLVAKNEEEMTLWVNCIC 105 (108)
T ss_pred ccEEEEECCHHHHHHHHHHHH
Confidence 579999999999999999985
No 264
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=21.89 E-value=1.5e+02 Score=36.15 Aligned_cols=100 Identities=18% Similarity=0.096 Sum_probs=61.2
Q ss_pred EEEEecccccccCCCCcc---------C--cCCCCCCCeEEEEEEcCcChHHHHHHHHHhccCCCCCCCceEEEEEEEEE
Q 003790 683 GIMICNHACRTVQSAQVV---------A--PRAEYDDNTMDMLLVHGSGRLRLARFFLLLQMGRHLSLPYVEYVKVKSVK 751 (795)
Q Consensus 683 ~v~v~N~~~~~~~~d~~l---------A--P~A~l~DG~LDLvlV~~~sR~~Ll~~l~~~~~G~hl~~P~V~~ikvka~r 751 (795)
+|.+.|++++--|.++-= - -.++-+||++.++-|.+.... +..+..++++.|+.. -...++++
T Consensus 509 GIv~LNIpS~ggG~nlWg~~~~~~~~~~~~~~~d~~dgliEvvgv~~~~h~--~~~qvgL~~a~rigQ----~~a~~~~~ 582 (634)
T KOG1169|consen 509 GIVVLNIPSWGGGSNLWGNSNKSKGNFRGFSEADDDDGLIEVVGVQDSWHL--LQEQVGLESALRIGQ----RLAQCSER 582 (634)
T ss_pred eEEEEcccccccCcccccccCccccccccccccCCCcCeEEEEEeccchhh--hhhhhccchhhHHHH----HhhccEEE
Confidence 566778887633333211 1 223344699999999876544 334456666666654 00133333
Q ss_pred -EEecCCCCCceeecCceee-cCeeEEEeeecccccccccc
Q 003790 752 -IKAGKHTHNSCGIDGELFP-LNGQVISSLLPEQCRLIGRS 790 (795)
Q Consensus 752 -Iep~~~~~~~i~VDGE~ip-~~~~V~~~vlP~~~rlig~~ 790 (795)
|... ...+|.||||.-- -.+.|.|.=.+++--|++.+
T Consensus 583 ~i~~~--k~~PMQiDGEPW~Q~p~tI~Ithk~q~~mL~~~~ 621 (634)
T KOG1169|consen 583 VIGTK--KTFPMQIDGEPWMQPPCTIEITHKNQAPMLMKAA 621 (634)
T ss_pred Eeccc--cCcceecCCccccCCCceEEEEecchHhhhhccc
Confidence 4443 5678999999983 35668777777777777654
No 265
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=21.87 E-value=82 Score=34.56 Aligned_cols=50 Identities=28% Similarity=0.428 Sum_probs=36.0
Q ss_pred HHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeecCCcchhhhh
Q 003790 327 LASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (795)
Q Consensus 327 la~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArs 384 (795)
+++.+... ..|.+|++|||||+..+ +.|.+. ..+++-.||.==-||+..+
T Consensus 84 ~~~~l~~~-~Id~Li~IGG~gs~~~a-~~L~~~------~~i~vigiPkTIDNDi~gt 133 (282)
T PF00365_consen 84 IVENLKKL-GIDALIVIGGDGSMKGA-HKLSEE------FGIPVIGIPKTIDNDIPGT 133 (282)
T ss_dssp HHHHHHHT-TESEEEEEESHHHHHHH-HHHHHH------HHSEEEEEEEETTSSCTTS
T ss_pred HHHHHHHh-CCCEEEEecCCCHHHHH-HHHHhc------CceEEEEEeccccCCcCCC
Confidence 44444432 47999999999998776 555532 1489999999778998853
No 266
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=21.86 E-value=4.6e+02 Score=29.63 Aligned_cols=82 Identities=13% Similarity=0.314 Sum_probs=46.3
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe-C---CcchHHHHHHHhhhcC--CCCCeEEEcCchHHHHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT-T---SAGHAKNLASTVDISS--CPDGIICVGGDGIINEV 352 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T-~---~~ghA~ela~~l~~~~--~~D~IVvvGGDGTlnEV 352 (795)
+|++||..+.-.+ .+.+.+...|. ++.+.++.- + .-..+.++.+.+...+ ..|.||++|| |.+-.+
T Consensus 20 ~r~lIVtD~~v~~-----l~~~~l~~~L~--~~~~~~~~~~e~~k~l~~v~~~~~~~~~~~~~r~d~iIaiGG-Gsv~D~ 91 (346)
T cd08196 20 ENDVFIVDANVAE-----LYRDRLDLPLD--AAPVIAIDATEENKSLEAVSSVIESLRQNGARRNTHLVAIGG-GIIQDV 91 (346)
T ss_pred CeEEEEECccHHH-----HHHHHHHHHhc--CCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-hHHHHH
Confidence 6889998875532 24456666665 445544431 1 1233444444443222 1278888887 676666
Q ss_pred HHHHH---cCCCcccCCCccEEEeec
Q 003790 353 LNGLL---SRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 353 vNGL~---~r~d~~~a~~iPLGIIP~ 375 (795)
+-.+. .| .+|+-.||.
T Consensus 92 ak~vA~~~~r-------gi~~i~iPT 110 (346)
T cd08196 92 TTFVASIYMR-------GVSWSFVPT 110 (346)
T ss_pred HHHHHHHHHc-------CCCeEEecc
Confidence 66553 34 467777775
No 267
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=21.74 E-value=9.7e+02 Score=25.36 Aligned_cols=77 Identities=10% Similarity=0.082 Sum_probs=43.9
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEe--CCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHH
Q 003790 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKT--TSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNG 355 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T--~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNG 355 (795)
.+++.+|..+.. .+ .... +.++..+++.|+++..... ....+....+.++.. ..+|+|++.+.+...-.++..
T Consensus 133 ~~~vail~~~~~-~~--~~~~-~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~-~~pdaIi~~~~~~~~~~~~~~ 207 (312)
T cd06333 133 VKTVAFIGFSDA-YG--ESGL-KELKALAPKYGIEVVADERYGRTDTSVTAQLLKIRA-ARPDAVLIWGSGTPAALPAKN 207 (312)
T ss_pred CCEEEEEecCcH-HH--HHHH-HHHHHHHHHcCCEEEEEEeeCCCCcCHHHHHHHHHh-CCCCEEEEecCCcHHHHHHHH
Confidence 467888875432 22 2223 4677788999987643211 112233333444322 247888887766556668888
Q ss_pred HHcC
Q 003790 356 LLSR 359 (795)
Q Consensus 356 L~~r 359 (795)
+...
T Consensus 208 l~~~ 211 (312)
T cd06333 208 LRER 211 (312)
T ss_pred HHHc
Confidence 8654
No 268
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=21.62 E-value=1.7e+02 Score=27.85 Aligned_cols=58 Identities=14% Similarity=0.239 Sum_probs=35.1
Q ss_pred HhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhh-cCCCCCeEEEcCch-----HHHHHHHHHHc
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDI-SSCPDGIICVGGDG-----IINEVLNGLLS 358 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~-~~~~D~IVvvGGDG-----TlnEVvNGL~~ 358 (795)
..++.+|++.|+++.....- +++..++.+.+.. ...+|.||..||=| .+.+++..+..
T Consensus 21 ~~l~~~l~~~G~~~~~~~~v-~Dd~~~I~~~l~~~~~~~dliittGG~g~g~~D~t~~~l~~~~~ 84 (135)
T smart00852 21 PALAELLTELGIEVTRYVIV-PDDKEAIKEALREALERADLVITTGGTGPGPDDVTPEAVAEALG 84 (135)
T ss_pred HHHHHHHHHCCCeEEEEEEe-CCCHHHHHHHHHHHHhCCCEEEEcCCCCCCCCcCcHHHHHHHhC
Confidence 35778899999876544332 2444444443321 02379999999855 45666666654
No 269
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=21.33 E-value=82 Score=35.76 Aligned_cols=96 Identities=20% Similarity=0.196 Sum_probs=53.5
Q ss_pred CCeEEEEEcCCCCCCCc--hhhHHHhHHHHHHHcCCeEEEEEeCCc------chHHHHHHHhhhcCCCCCeEEEcCchHH
Q 003790 278 PPKMLVILNPRSGRGRS--SKVFHDIVEPIFKLAGFKLEVVKTTSA------GHAKNLASTVDISSCPDGIICVGGDGII 349 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka--~ki~~~~I~plL~~aGi~~~v~~T~~~------ghA~ela~~l~~~~~~D~IVvvGGDGTl 349 (795)
..+++-|+|-..|=-.. .++-...+..++..-|.. ..|.+. +.....++.+.. .+.|.+|++|||||.
T Consensus 32 g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT~---lgssR~~~~~~~e~~~~~~~~l~~-~gId~LvvIGGDgS~ 107 (347)
T COG0205 32 GLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGTF---LGSARFPEFKTEEGRKVAAENLKK-LGIDALVVIGGDGSY 107 (347)
T ss_pred CCEEEEEecchhhhcCCcceeccccchhHHHhcCCeE---EeeCCCCCcccHHHHHHHHHHHHH-cCCCEEEEECCCChH
Confidence 34566666665554333 122223445555555521 222221 122233444433 357999999999998
Q ss_pred HHHHHHHHcCCCcccCCCccEEEeecCCcchhhhh
Q 003790 350 NEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (795)
Q Consensus 350 nEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArs 384 (795)
.-.. -|.+. ..+++-=||.==-||+..+
T Consensus 108 ~gA~-~Lae~------~~i~vVGvPkTIDNDi~~t 135 (347)
T COG0205 108 TGAA-LLAEE------GGIPVVGVPKTIDNDISGT 135 (347)
T ss_pred HHHH-HHHHh------cCCcEEecCCCccCCCccc
Confidence 7653 34433 1377888888778998843
No 270
>PRK05569 flavodoxin; Provisional
Probab=21.15 E-value=2.7e+02 Score=26.37 Aligned_cols=68 Identities=16% Similarity=0.130 Sum_probs=41.3
Q ss_pred CeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcC---ch-----HHH
Q 003790 279 PKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGG---DG-----IIN 350 (795)
Q Consensus 279 krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGG---DG-----Tln 350 (795)
++++|||= |+.|...++. +.|..-+++.|.+++++....... ..+ . .+|.|+++.. .| .+-
T Consensus 2 ~ki~iiY~--S~tGnT~~iA-~~i~~~~~~~g~~v~~~~~~~~~~-----~~~--~-~~d~iilgsPty~~~~~~~~~~~ 70 (141)
T PRK05569 2 KKVSIIYW--SCGGNVEVLA-NTIADGAKEAGAEVTIKHVADAKV-----EDV--L-EADAVAFGSPSMDNNNIEQEEMA 70 (141)
T ss_pred CeEEEEEE--CCCCHHHHHH-HHHHHHHHhCCCeEEEEECCcCCH-----HHH--h-hCCEEEEECCCcCCCcCChHHHH
Confidence 46788884 4455655655 567777888888887776544332 122 1 3688887763 33 256
Q ss_pred HHHHHHH
Q 003790 351 EVLNGLL 357 (795)
Q Consensus 351 EVvNGL~ 357 (795)
.+++.|.
T Consensus 71 ~~~~~l~ 77 (141)
T PRK05569 71 PFLDQFK 77 (141)
T ss_pred HHHHHhh
Confidence 6666653
No 271
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.79 E-value=7.7e+02 Score=25.28 Aligned_cols=66 Identities=11% Similarity=0.210 Sum_probs=39.7
Q ss_pred HhHHHHHHHcCCeEEEEEeCCc-chHHHHHHHhhhcCCCCCeEEEcCc---h-HHHHHHHHHHcCCCcccCCCccEEEe
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGD---G-IINEVLNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~-ghA~ela~~l~~~~~~D~IVvvGGD---G-TlnEVvNGL~~r~d~~~a~~iPLGII 373 (795)
..++..+++.|+.+.+..+... ....++.+.+.. ..+|+||+.+.. - .....+..+... ++|+-.+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~~~~~~i~~~~~~-------~ipvV~i 89 (273)
T cd06292 19 EAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLA-RGVRGVVFISSLHADTHADHSHYERLAER-------GLPVVLV 89 (273)
T ss_pred HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHH-cCCCEEEEeCCCCCcccchhHHHHHHHhC-------CCCEEEE
Confidence 5788889999988876655432 223345555544 358999998743 2 123345555443 4676665
No 272
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=20.70 E-value=2.3e+02 Score=30.62 Aligned_cols=27 Identities=22% Similarity=0.012 Sum_probs=22.1
Q ss_pred CCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeec
Q 003790 337 PDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPA 375 (795)
Q Consensus 337 ~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~ 375 (795)
.|.+|+.|| +|+.|++.. ++|.-+||.
T Consensus 242 aDl~Is~~G-~T~~E~~a~-----------g~P~i~i~~ 268 (279)
T TIGR03590 242 ADLAIGAAG-STSWERCCL-----------GLPSLAICL 268 (279)
T ss_pred CCEEEECCc-hHHHHHHHc-----------CCCEEEEEe
Confidence 599999999 999998642 578888876
No 273
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=20.70 E-value=2.7e+02 Score=34.93 Aligned_cols=60 Identities=23% Similarity=0.305 Sum_probs=39.5
Q ss_pred hHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCCcccCCCccEEEeecCCcchhhhh
Q 003790 323 HAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGNQKEGISIPIGIIPAGSDNSLVWT 384 (795)
Q Consensus 323 hA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d~~~a~~iPLGIIP~GTGNdfArs 384 (795)
+...+++.+... ..|.+|++|||||+.-+.. |.+.........+|+-.||.==-||+.-+
T Consensus 466 ~~~~i~~~l~~~-~Id~LivIGGdgs~~~a~~-L~~~~~~~~~~~i~vvgIPkTIDNDi~gt 525 (745)
T TIGR02478 466 DLGMIAYYFQKH-KIDGLLIIGGFEAFEALLQ-LEQAREKYPAFRIPMVVIPATISNNVPGT 525 (745)
T ss_pred HHHHHHHHHHHc-CCCEEEEeCChHHHHHHHH-HHHHHhhCCCCCccEEEecccccCCCCCC
Confidence 445556666543 4799999999999976543 32211001124689999999888998743
No 274
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=20.68 E-value=3.6e+02 Score=27.42 Aligned_cols=65 Identities=22% Similarity=0.227 Sum_probs=36.9
Q ss_pred EEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcch-HHHHHHHhhhcCCCCCeEEEcCchH
Q 003790 281 MLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGH-AKNLASTVDISSCPDGIICVGGDGI 348 (795)
Q Consensus 281 llVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~gh-A~ela~~l~~~~~~D~IVvvGGDGT 348 (795)
+.||+ |.....--.. +...++..+++.|+.+.+..+.+... ..++.+.+.. ..+|+||+.+++-+
T Consensus 2 i~~v~-~~~~~~~~~~-~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~vdgiii~~~~~~ 67 (267)
T cd06284 2 ILVLV-PDIANPFFSE-ILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRR-KQADGIILLDGSLP 67 (267)
T ss_pred EEEEE-CCCCCccHHH-HHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHH-cCCCEEEEecCCCC
Confidence 34445 4443322223 33578888999998887665543221 2234444433 34799999887643
No 275
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=20.48 E-value=6.3e+02 Score=27.72 Aligned_cols=86 Identities=14% Similarity=0.040 Sum_probs=50.6
Q ss_pred CCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCc-chHHHHHHHhhhcCCCCCeEEEcCchH-HHHHHHH
Q 003790 278 PPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSA-GHAKNLASTVDISSCPDGIICVGGDGI-INEVLNG 355 (795)
Q Consensus 278 ~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~-ghA~ela~~l~~~~~~D~IVvvGGDGT-lnEVvNG 355 (795)
..++.|++ |.-...-...+. +-++..+++.|+.+.+..+... ....++.+.+.. ..+|+||+++.+.. +.+.++-
T Consensus 25 ~~~Ig~i~-~~~~~~f~~~~~-~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~-~~vDGiIi~~~~~~~~~~~l~~ 101 (330)
T PRK10355 25 EVKIGMAI-DDLRLERWQKDR-DIFVKKAESLGAKVFVQSANGNEETQMSQIENMIN-RGVDVLVIIPYNGQVLSNVIKE 101 (330)
T ss_pred CceEEEEe-cCCCchHHHHHH-HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChhhHHHHHHH
Confidence 34555555 433322222222 4567788888998887766432 223344445433 35899999987754 4566776
Q ss_pred HHcCCCcccCCCccEEEe
Q 003790 356 LLSRGNQKEGISIPIGII 373 (795)
Q Consensus 356 L~~r~d~~~a~~iPLGII 373 (795)
+... .+|+-++
T Consensus 102 ~~~~-------~iPvV~i 112 (330)
T PRK10355 102 AKQE-------GIKVLAY 112 (330)
T ss_pred HHHC-------CCeEEEE
Confidence 6554 4777766
No 276
>cd07115 ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxymuconic semialdehyde dehydrogenase-like. 4-hydroxymuconic semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of Pseudomonas fluorescens ACB involved in 4-hydroxyacetophenone degradation, and putative hydroxycaproate semialdehyde dehydrogenase (ChnE) of Brachymonas petroleovorans involved in cyclohexane metabolism, and other similar sequences, are present in this CD.
Probab=20.29 E-value=4.8e+02 Score=30.19 Aligned_cols=106 Identities=18% Similarity=0.181 Sum_probs=61.9
Q ss_pred EEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHHHcCCC
Q 003790 282 LVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGLLSRGN 361 (795)
Q Consensus 282 lVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL~~r~d 361 (795)
.||+-|..-.-... ..+..+|.++|+.-.++..-.. ...++.+.+......|.|+.-|+-.+-..|......+
T Consensus 147 ~Vi~Kps~~~p~~~----~~l~~~~~~aGlP~~~~~~v~g-~~~~~~~~l~~~~~id~v~fTGs~~~g~~v~~~aa~~-- 219 (453)
T cd07115 147 TVVLKPAELTPLSA----LRIAELMAEAGFPAGVLNVVTG-FGEVAGAALVEHPDVDKITFTGSTAVGRKIMQGAAGN-- 219 (453)
T ss_pred EEEEECCCCCcHHH----HHHHHHHHhcCcCchheEEEec-CchhHHHHHhcCCCCCEEEEECcHHHHHHHHHHHhhc--
Confidence 46666665443322 2466788889886433322111 1123444443333478999999999999988766543
Q ss_pred cccCCCccEEEeecCCcchhhhhhcCCCCHHHHHHHHHhCc
Q 003790 362 QKEGISIPIGIIPAGSDNSLVWTVLGVRDPVSAALAIVKGG 402 (795)
Q Consensus 362 ~~~a~~iPLGIIP~GTGNdfArsllGi~dp~~Aa~~IlkG~ 402 (795)
-.|+ ++=+| ||+-+- ++--.|+..|+..|+.|.
T Consensus 220 -----~~~~-~lElg-G~~p~i-V~~dAdl~~aa~~i~~~~ 252 (453)
T cd07115 220 -----LKRV-SLELG-GKSANI-VFADADLDAAVRAAATGI 252 (453)
T ss_pred -----CCeE-EEecC-CCCceE-ECCCCCHHHHHHHHHHHH
Confidence 1233 44455 666552 233357888888888765
No 277
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=20.13 E-value=3.7e+02 Score=27.81 Aligned_cols=66 Identities=15% Similarity=0.143 Sum_probs=41.0
Q ss_pred HhHHHHHHHcCCeEEEEEeCCcc-hHHHHHHHhhhcCCCCCeEEEcCchH-HHHHHHHHHcCCCcccCCCccEEEe
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSAG-HAKNLASTVDISSCPDGIICVGGDGI-INEVLNGLLSRGNQKEGISIPIGII 373 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~g-hA~ela~~l~~~~~~D~IVvvGGDGT-lnEVvNGL~~r~d~~~a~~iPLGII 373 (795)
+.++..+++.|+++.+..+.... .-.++.+.+.. ..+|+||+.+.+.. +.+.++.+... .+|+-.+
T Consensus 19 ~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~~~i~~~~~~-------~iPvV~~ 86 (273)
T cd06309 19 KSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIA-QGVDVIILAPVVETGWDPVLKEAKAA-------GIPVILV 86 (273)
T ss_pred HHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHH-cCCCEEEEcCCccccchHHHHHHHHC-------CCCEEEE
Confidence 46778888899888776554322 12234455533 35899999887754 35666666543 4666554
No 278
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=20.12 E-value=6.1e+02 Score=26.12 Aligned_cols=77 Identities=14% Similarity=0.172 Sum_probs=45.6
Q ss_pred CCCeEEEEEcCCCCCCCchhhHHHhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCchHHHHHHHHH
Q 003790 277 SPPKMLVILNPRSGRGRSSKVFHDIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDGIINEVLNGL 356 (795)
Q Consensus 277 r~krllVIvNP~SG~Gka~ki~~~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDGTlnEVvNGL 356 (795)
..+++.+|..+.... +...+ +.++..+++.|+++.........+..+.++++.. .+| .|++.+|.+...++..+
T Consensus 130 g~~~i~~l~~~~~~~--~~~r~-~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~d-ai~~~~d~~a~~~~~~~ 203 (281)
T cd06325 130 DAKTVGVLYNPSEAN--SVVQV-KELKKAAAKLGIEVVEATVSSSNDVQQAAQSLAG--KVD-AIYVPTDNTVASAMEAV 203 (281)
T ss_pred CCcEEEEEeCCCCcc--HHHHH-HHHHHHHHhCCCEEEEEecCCHHHHHHHHHHhcc--cCC-EEEEcCchhHHhHHHHH
Confidence 457788887655422 22333 4567778888887544222333444555555532 245 45567898888888887
Q ss_pred HcC
Q 003790 357 LSR 359 (795)
Q Consensus 357 ~~r 359 (795)
...
T Consensus 204 ~~~ 206 (281)
T cd06325 204 VKV 206 (281)
T ss_pred HHH
Confidence 654
No 279
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=20.02 E-value=2.7e+02 Score=28.69 Aligned_cols=45 Identities=16% Similarity=0.273 Sum_probs=27.6
Q ss_pred HhHHHHHHHcCCeEEEEEeCCcchHHHHHHHhhhcCCCCCeEEEcCch
Q 003790 300 DIVEPIFKLAGFKLEVVKTTSAGHAKNLASTVDISSCPDGIICVGGDG 347 (795)
Q Consensus 300 ~~I~plL~~aGi~~~v~~T~~~ghA~ela~~l~~~~~~D~IVvvGGDG 347 (795)
+.....|+..|++......-....-.++.+.+. ..|+|++.|||=
T Consensus 47 ~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~---~ad~I~~~GG~~ 91 (210)
T cd03129 47 EEYRAAFERLGVEVVHLLLIDTANDPDVVARLL---EADGIFVGGGNQ 91 (210)
T ss_pred HHHHHHHHHcCCceEEEeccCCCCCHHHHHHHh---hCCEEEEcCCcH
Confidence 456778888898765444322112234444443 368999999885
Done!